[ { "uniprot_canonical_ac": "F1S983-1", "uniprot_ac": "F1S983", "uniprot_id": "F1S983_PIG", "mass": { "chemical_mass": 13893.0, "monoisotopic_mass": 13893.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Calcitonin receptor-stimulating peptide 1", "type": "recommended", "evidence": [ { "id": "F1S983", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S983/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S983", "url": "https://www.uniprot.org/uniprotkb/F1S983" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1S983", "locus": {} } ], "crossref": [ { "id": "F1S983", "url": "https://alphafold.ebi.ac.uk/entry/F1S983", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013390", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013390", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001693", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001693", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015476", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015476", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021117", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021117", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QAFGRKK", "url": "https://omabrowser.org/oma/group/QAFGRKK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10505:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10505:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S983", "url": "https://www.uniprot.org/uniprotkb/F1S983", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S983-1", "url": "https://www.uniprot.org/uniprotkb/F1S983-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LPGWSAEPCLALGGILLPYRSSLLPLLRSAFGSPFDPATLSEEESRLLLAAMVNDYEQMKAREMQKQRAQGSCISVQKRSCNTATCMTHRLVGLLSRSGSMVRSNLLPTKMGFKVFGGRRRNFWI", "length": 125, "header": "tr|F1S983-1|F1S983_PIG Isoform 1 of Calcitonin receptor-stimulating peptide 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1S983-1" }, "isoforms": [ { "isoform_ac": "F1S983-1", "url": "https://www.uniprot.org/uniprotkb/F1S983/entry#F1S983-1", "sequence": { "sequence": "LPGWSAEPCLALGGILLPYRSSLLPLLRSAFGSPFDPATLSEEESRLLLAAMVNDYEQMKAREMQKQRAQGSCISVQKRSCNTATCMTHRLVGLLSRSGSMVRSNLLPTKMGFKVFGGRRRNFWI", "length": 125, "header": "tr|F1S983-1|F1S983_PIG Isoform 1 of Calcitonin receptor-stimulating peptide 1 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1S983-1" }, "locus": { "chromosome": "2", "start_pos": 44368368, "end_pos": 44366657, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014627.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014627.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014232.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014232.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S983", "url": "https://www.uniprot.org/uniprotkb/F1S983" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcitonin receptor binding", "id": "GO:0031716", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031716", "evidence": [ { "database": "UniProtKB", "id": "F1S983", "url": "https://www.uniprot.org/uniprotkb/F1S983" } ], "pmid": "" }, { "name": "hormone activity", "id": "GO:0005179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005179", "evidence": [ { "database": "UniProtKB", "id": "F1S983", "url": "https://www.uniprot.org/uniprotkb/F1S983" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1S983", "url": "https://www.uniprot.org/uniprotkb/F1S983" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "adenylate cyclase-activating G protein-coupled receptor signaling pathway", "id": "GO:0007189", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007189", "evidence": [ { "database": "UniProtKB", "id": "F1S983", "url": "https://www.uniprot.org/uniprotkb/F1S983" } ], "pmid": "" }, { "name": "regulation of cytosolic calcium ion concentration", "id": "GO:0051480", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051480", "evidence": [ { "database": "UniProtKB", "id": "F1S983", "url": "https://www.uniprot.org/uniprotkb/F1S983" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S983-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 125, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S983-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S983" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S983", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S983" }, { "id": "SM00113", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00113" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calcitonin peptide-like", "eco_id": "ECO_0000259", "start_pos": 78, "end_pos": 120, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9A2-1", "uniprot_ac": "F1S9A2", "uniprot_id": "F1S9A2_PIG", "mass": { "chemical_mass": 38748.0, "monoisotopic_mass": 38748.0 }, "refseq": {}, "gene_names": [ { "name": "OR6J1", "type": "recommended", "evidence": [ { "id": "F1S9A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9A2" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1S9A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9A2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9A2", "url": "https://www.uniprot.org/uniprotkb/F1S9A2#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9A2", "url": "https://www.uniprot.org/uniprotkb/F1S9A2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR6J1", "url": "https://www.uniprot.org/uniprotkb/F1S9A2", "locus": { "chromosome": "7", "start_pos": 76393292, "end_pos": 76392243, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002052", "url": "https://www.ensembl.org/id/ENSSSCG00000002052" } ] } } ], "crossref": [ { "id": "F1S9A2", "url": "https://alphafold.ebi.ac.uk/entry/F1S9A2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002052", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002052", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151899", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151899", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S9A2", "url": "https://www.orthodb.org/?gene=F1S9A2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S9A2", "url": "https://www.uniprot.org/uniprotkb/F1S9A2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9A2-1", "url": "https://www.uniprot.org/uniprotkb/F1S9A2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENQTAGVTEFILLGFPLSRWMEVLFLVLLLPTFLLTLLGNLLIISIVLSYSRLHTPMYFFLCNLSILDILFTSVISPKVLANLGSGDKTISFAGCITQCYFYFFLGTVEFLLLTVMSYDRYAAICYPLRYSSIMRPAVCTGTVVFSWMGGFLSVLFPTILISQLPFCGSNVINHFFCDSGPLLALACADTSAIELMDFMLSSIVILCCIVLVAYSYTSIILTIVRIPSASGRKKAFNTCASHLTIVVISSSITVFIYVTPSQKEYLEINKIPSVLSSVVAPFLNPFIYTLRNDTVLGVLKDVWVRAQGVLEKRMRTMPRSRLSSNKDRRGGTNCSSSSLSCALCANSQY", "length": 350, "header": "tr|F1S9A2-1|F1S9A2_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR6J1 PE=3 SV=4 CANONICAL=F1S9A2-1" }, "isoforms": [ { "isoform_ac": "F1S9A2-1", "url": "https://www.uniprot.org/uniprotkb/F1S9A2/entry#F1S9A2-1", "sequence": { "sequence": "MENQTAGVTEFILLGFPLSRWMEVLFLVLLLPTFLLTLLGNLLIISIVLSYSRLHTPMYFFLCNLSILDILFTSVISPKVLANLGSGDKTISFAGCITQCYFYFFLGTVEFLLLTVMSYDRYAAICYPLRYSSIMRPAVCTGTVVFSWMGGFLSVLFPTILISQLPFCGSNVINHFFCDSGPLLALACADTSAIELMDFMLSSIVILCCIVLVAYSYTSIILTIVRIPSASGRKKAFNTCASHLTIVVISSSITVFIYVTPSQKEYLEINKIPSVLSSVVAPFLNPFIYTLRNDTVLGVLKDVWVRAQGVLEKRMRTMPRSRLSSNKDRRGGTNCSSSSLSCALCANSQY", "length": 350, "header": "tr|F1S9A2-1|F1S9A2_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR6J1 PE=3 SV=4 CANONICAL=F1S9A2-1" }, "locus": { "chromosome": "7", "start_pos": 76393292, "end_pos": 76392243, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002295.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002295.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002242.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002242.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 260, "start_aa": "Thr", "end_pos": 260, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr260", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9A2", "url": "https://www.uniprot.org/uniprotkb/F1S9A2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151899", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151899", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S9A2", "url": "https://www.uniprot.org/uniprotkb/F1S9A2" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S9A2", "url": "https://www.uniprot.org/uniprotkb/F1S9A2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9A2", "url": "https://www.uniprot.org/uniprotkb/F1S9A2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9A2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 350, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9A2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9A2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9A2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9A2" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 260 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 293, "end_pos": 295 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9B4-1", "uniprot_ac": "F1S9B4", "uniprot_id": "F1S9B4_PIG", "mass": { "chemical_mass": 35350.0, "monoisotopic_mass": 35350.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1S9B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9B4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9B4", "url": "https://www.uniprot.org/uniprotkb/F1S9B4#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9B4", "url": "https://www.uniprot.org/uniprotkb/F1S9B4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1S9B4", "locus": {} } ], "crossref": [ { "id": "F1S9B4", "url": "https://alphafold.ebi.ac.uk/entry/F1S9B4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043465", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043465", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LTIMWNT", "url": "https://omabrowser.org/oma/group/LTIMWNT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S9B4", "url": "https://www.uniprot.org/uniprotkb/F1S9B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9B4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9B4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNLTTVTEFVLLGLSDACELQMLIFLGLLLTYLLTLLGNLLIVVVTLMDRRLHTPMYYFLRNFAVLEIWFTSVIFPKMLTNILTRHKTISLAGCFLQSFLYFSLGTTEFFLLAVMSFDRYVAICNPLHYVTIMSKRVCVQLVLYSWMTGFLLIVILSFIIFRQPFCGPNVINHFFCDNFPLLELICADTSLIELLGFIMANVSLLGTLLVTATCYGHILHTILRIPLAKERQRAFSTCSSHIIVVSLFYGSCIFMYVRSGKGRQGEDRNKVVALLNTVVTPVLNPFIYTLRNKQVKQVFREQVNRLFL", "length": 309, "header": "tr|F1S9B4-1|F1S9B4_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=F1S9B4-1" }, "isoforms": [ { "isoform_ac": "F1S9B4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9B4/entry#F1S9B4-1", "sequence": { "sequence": "MGNLTTVTEFVLLGLSDACELQMLIFLGLLLTYLLTLLGNLLIVVVTLMDRRLHTPMYYFLRNFAVLEIWFTSVIFPKMLTNILTRHKTISLAGCFLQSFLYFSLGTTEFFLLAVMSFDRYVAICNPLHYVTIMSKRVCVQLVLYSWMTGFLLIVILSFIIFRQPFCGPNVINHFFCDNFPLLELICADTSLIELLGFIMANVSLLGTLLVTATCYGHILHTILRIPLAKERQRAFSTCSSHIIVVSLFYGSCIFMYVRSGKGRQGEDRNKVVALLNTVVTPVLNPFIYTLRNKQVKQVFREQVNRLFL", "length": 309, "header": "tr|F1S9B4-1|F1S9B4_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=F1S9B4-1" }, "locus": { "chromosome": "7", "start_pos": 76335796, "end_pos": 76334870, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002287.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002287.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002235.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002235.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9B4", "url": "https://www.uniprot.org/uniprotkb/F1S9B4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S9B4", "url": "https://www.uniprot.org/uniprotkb/F1S9B4" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S9B4", "url": "https://www.uniprot.org/uniprotkb/F1S9B4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9B4", "url": "https://www.uniprot.org/uniprotkb/F1S9B4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9B4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 309, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9B4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9B4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9B4" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 202, "end_pos": 204 }, { "start_pos": 3, "end_pos": 5 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9C8-1", "uniprot_ac": "F1S9C8", "uniprot_id": "F1S9C8_PIG", "mass": { "chemical_mass": 83796.0, "monoisotopic_mass": 83796.0 }, "refseq": { "ac": "NP_001230544", "name": "cadherin-24 precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230544" }, "gene_names": [ { "name": "CDH24", "type": "recommended", "evidence": [ { "id": "F1S9C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ] }, { "name": "CDH24", "type": "synonym", "evidence": [ { "id": "NP_001230544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230544" } ] } ], "protein_names": [ { "name": "Cadherin-24", "type": "recommended", "evidence": [ { "id": "F1S9C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9C8/entry#names_and_taxonomy" } ] }, { "name": "cadherin-24 precursor", "type": "synonym", "evidence": [ { "id": "NP_001230544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230544" } ] } ], "function": [ { "annotation": "Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. Cadherin-24 mediate strong cell-cell adhesion.", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8#function" }, { "database": "UniProtKB", "id": "ARBA00055489", "url": "https://www.uniprot.org/uniprotkb/ARBA00055489#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDH24", "url": "https://www.uniprot.org/uniprotkb/F1S9C8", "locus": { "chromosome": "7", "start_pos": 76001130, "end_pos": 75990220, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002037", "url": "https://www.ensembl.org/id/ENSSSCG00000002037" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002037", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002037", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156315", "url": "https://www.ncbi.nlm.nih.gov/gene/100156315", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156315", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156315", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FETRHSY", "url": "https://omabrowser.org/oma/group/FETRHSY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9C8", "url": "https://www.orthodb.org/?gene=F1S9C8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF272", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF272", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418990", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230544", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230544", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9C8-1", "url": "https://www.uniprot.org/uniprotkb/F1S9C8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWGLVRLLLAWLGGWGCMGRLAAPARAWAGSRGGPGPALLRTRRSWVWNQFFVIEEYAGPEPVLIGKLHSDVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKVQDINDNPPIFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRTAIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLVGRLQAQDPDLGDNALMAYSILDGEGSEAFSISTDSQGRDGLLTVRKPLDFENRRSYSFRVEATNTLIDPAYLRRGPFKDVASVRVAVQDAPEPPAFSQAAYHLSVPENKAPGTLVGQVSASDLDSPASPIRYSILPHSDPERCFSIEPEDGTIRTAVPLDREARVWHNLTVLATELDSSAQASRVQVAIQTLDENDNAPQLAEPYDTFVCDSAAPGQLIQVIRALDRDEVGNSSRVSLQGPLGPDANFTVRDNRDGSASLLLPSRPAPPRQAPYLVPIELWDWGQPALSSTATVTVSVCRCRPDGSVASCRPEAQLSPTGLSTGALLAIITCVGTLLALVVLFVALRRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDISALQNPDGAAPPAPGPPARRDVLPWARAPRQPRPPGPADVAQLLALRLREADDDPSVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEIGGAPGPAEPLDDWGPLFRTLAELYGAKEPPAP", "length": 781, "header": "tr|F1S9C8-1|F1S9C8_PIG Isoform 1 of Cadherin-24 OS=Sus scrofa OX=9823 GN=CDH24 PE=4 SV=2 CANONICAL=F1S9C8-1" }, "isoforms": [ { "isoform_ac": "F1S9C8-1", "url": "https://www.uniprot.org/uniprotkb/F1S9C8/entry#F1S9C8-1", "sequence": { "sequence": "MWGLVRLLLAWLGGWGCMGRLAAPARAWAGSRGGPGPALLRTRRSWVWNQFFVIEEYAGPEPVLIGKLHSDVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKVQDINDNPPIFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRTAIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLVGRLQAQDPDLGDNALMAYSILDGEGSEAFSISTDSQGRDGLLTVRKPLDFENRRSYSFRVEATNTLIDPAYLRRGPFKDVASVRVAVQDAPEPPAFSQAAYHLSVPENKAPGTLVGQVSASDLDSPASPIRYSILPHSDPERCFSIEPEDGTIRTAVPLDREARVWHNLTVLATELDSSAQASRVQVAIQTLDENDNAPQLAEPYDTFVCDSAAPGQLIQVIRALDRDEVGNSSRVSLQGPLGPDANFTVRDNRDGSASLLLPSRPAPPRQAPYLVPIELWDWGQPALSSTATVTVSVCRCRPDGSVASCRPEAQLSPTGLSTGALLAIITCVGTLLALVVLFVALRRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDISALQNPDGAAPPAPGPPARRDVLPWARAPRQPRPPGPADVAQLLALRLREADDDPSVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEIGGAPGPAEPLDDWGPLFRTLAELYGAKEPPAP", "length": 781, "header": "tr|F1S9C8-1|F1S9C8_PIG Isoform 1 of Cadherin-24 OS=Sus scrofa OX=9823 GN=CDH24 PE=4 SV=2 CANONICAL=F1S9C8-1" }, "locus": { "chromosome": "7", "start_pos": 76000217, "end_pos": 75992009, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002279.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002279.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002227.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002227.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156315", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156315", "resource": "KEGG Pathway" }, { "id": "R-SSC-418990", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "resource": "Reactome", "description": "Adherens junctions interactions" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZTI3-1", "protein_name": "Cadherin-24", "gene_name": "Cdh24", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWGLVRLLLAWLGGWGCMGRLAAPVPAWAGSRGHSGPTLLRTRRSWVWNQFFVIEEYSGPEPVLIGKLHSDVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKVQDINDNPPVFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRTAIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLVGRLKAQDPDLGDNALMAYSILDGEGSEAFSISTDSQGQDGLLTVRKPLDFETRRSYTFRVEATNTLIDPAYLRRGPFKDVASVRVAVQDAPEPPAFTQATYHLVVPENKAPGTLVGQISANDLDSPASPIRYSILPHSDPEHCFSIEPEDGTIRTAVRLDREARVWYNLTVLATELDSSAQSSRVQVAIQTLDENDNAPQLAEPYDLFVCDSAAPGQLIQVIRALDRDEVGNSSQVSLQGPVGPDANFTVRDNRDGSASLLLPSRPAPPRQAPYLVPIELWDWGQPALSSTATVTVSVCRCQPDGSRAPCWPEAQLSPTGLSTGALLAIVTCMGTLLALVVLFVALRRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDITALQNPDGAAPPAAGPPVRRDVLPRTRAPRQPRPPGPADVAQLLALRLREADEDPSVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEAGGVPGPAEPLDDWGPLFRTLAELYGAKEPPAP", "length": 781 }, "evidence": [ { "id": "F1S9C8", "url": "https://omabrowser.org/oma/group/F1S9C8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BQ10-1", "protein_name": "Cadherin-24", "gene_name": "CDH24", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MHASAPRSSEQSLGWSPNMWGLVRLLLAWLGGWGCMGRLAAPARAWAGSRGGPEPSLLRTRRSWVWNQFFVIEEYAGPEPVLIGKLHSDVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKVQDINDNPPIFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRTAIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLVGRLRAQDPDLGDNALMAYSILDGEGSEAFSISTDSQGRDGLLTVRKPLDFETRRAYSFRVEATNTLIDPAYLRRGPFKDVASVRVAVQDAPEPPAFTQAAYHLAVPENKAPGTLVGQVSATDLDSPASPIRYSILPHSDLERCFSIEPEDGTIRTAGPLDREARVWHNLTVLATELDSSAQASRVQVAIQTLDENDNAPQLAEPYDTFVCDSAAPSQLIQVIRALDRDEVGNNSRVSFHGPLGPDANFTVRDNQDGSASLLLPSRPAPPRQAPYLVPIELWDWGQPVLSSTATVTVSVCRCRPDGSVASCRPEAQLSPAGLSTGALLAIVTCVGTLLALVVLFVALRRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDISALQNPDGAAPPAPGPPARRDVLPWARAPRQPRPPGPADVAQLLALRLREADEDPSVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEIGGAPGPAEPLDDWGPLFRTLAELYGAKEPPAP", "length": 799 }, "evidence": [ { "id": "F1S9C8", "url": "https://omabrowser.org/oma/group/F1S9C8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PFX6-1", "protein_name": "Cadherin-24", "gene_name": "Cdh24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWGLVRLLLAWLGGWGCMGRLAAPVPAWAGSRGHSGPTLLRTRRSWVWNQFFVIEEYSGPEPVLIGKLHSDVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKVQDINDNPPVFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRTAIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLVGRLKAQDPDLGDNALVAYSILNGEGSEVFSISTDSQGQDGLLTVRKPLDFETRRSYTFRVEATNTLIDPAYLRRGPFKDVASVRVTVQDAPEPPAFTQATYHLAVPENKAPGTLVGQISASDLDSPASPIRYSILPHSDPERCFSIEPEDGTIRTAVRLDREARVWHNLTILATELDSSAQSSRVQVAIQTLDENDNAPQLAEPYDIFVCDSAAPGQLIKVIRALDRDEVGNSSQVSLQGPVGPDANFTVRDNRDGSASLLLPSRPAPPRQAPYLIPIELWDWGQPALSSTATVTVSVCRCRPDGSMASCWPEAQLSPTGLSTGALLAIVTCMGTLLALVVLFVALRRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDITALQNPDGAAPPAAGPPVRRDVLPRTRAPRQPRPPGPADVVQLLALRLREADEDPSVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEAGGVPGPAEPLDDWGPLFRTLAELYGAKEPPAP", "length": 781 }, "evidence": [ { "id": "F1S9C8", "url": "https://omabrowser.org/oma/group/F1S9C8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86UP0-1", "protein_name": "Cadherin-24", "gene_name": "CDH24", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWGLVRLLLAWLGGWGCMGRLAAPARAWAGSREHPGPALLRTRRSWVWNQFFVIEEYAGPEPVLIGKLHSDVDRGEGRTKYLLTGEGAGTVFVIDEATGNIHVTKSLDREEKAQYVLLAQAVDRASNRPLEPPSEFIIKVQDINDNPPIFPLGPYHATVPEMSNVGTSVIQVTAHDADDPSYGNSAKLVYTVLDGLPFFSVDPQTGVVRTAIPNMDRETQEEFLVVIQAKDMGGHMGGLSGSTTVTVTLSDVNDNPPKFPQSLYQFSVVETAGPGTLVGRLRAQDPDLGDNALMAYSILDGEGSEAFSISTDLQGRDGLLTVRKPLDFESQRSYSFRVEATNTLIDPAYLRRGPFKDVASVRVAVQDAPEPPAFTQAAYHLTVPENKAPGTLVGQISAADLDSPASPIRYSILPHSDPERCFSIQPEEGTIHTAAPLDREARAWHNLTVLATELGWSWGPERGWVPLLVAEWSAPAAPPQRSPVGSAVGIPQDSSAQASRVQVAIQTLDENDNAPQLAEPYDTFVCDSAAPGQLIQVIRALDRDEVGNSSHVSFQGPLGPDANFTVQDNRDGSASLLLPSRPAPPRHAPYLVPIELWDWGQPALSSTATVTVSVCRCQPDGSVASCWPEAHLSAAGLSTGALLAIITCVGALLALVVLFVALRRQKQEALMVLEEEDVRENIITYDDEGGGEEDTEAFDITALQNPDGAAPPAPGPPARRDVLPRARVSRQPRPPGPADVAQLLALRLREADEDPGVPPYDSVQVYGYEGRGSSCGSLSSLGSGSEAGGAPGPAEPLDDWGPLFRTLAELYGAKEPPAP", "length": 819 }, "evidence": [ { "id": "F1S9C8", "url": "https://omabrowser.org/oma/group/F1S9C8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" }, { "name": "catenin complex", "id": "GO:0016342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016342", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" }, { "name": "cell-cell junction assembly", "id": "GO:0007043", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007043", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" }, { "name": "adherens junction organization", "id": "GO:0034332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034332", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" }, { "name": "calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules", "id": "GO:0016339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016339", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" }, { "name": "cell-cell adhesion mediated by cadherin", "id": "GO:0044331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044331", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "F1S9C8", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 446, "end_pos": 448, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 525, "end_pos": 527, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9C8" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 150, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 446, "end_pos": 448 }, { "start_pos": 510, "end_pos": 512 }, { "start_pos": 525, "end_pos": 527 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9G0-1", "uniprot_ac": "F1S9G0", "uniprot_id": "F1S9G0_PIG", "mass": { "chemical_mass": 18683.0, "monoisotopic_mass": 18683.0 }, "refseq": { "ac": "XP_005653823", "name": "gremlin-2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653823" }, "gene_names": [ { "name": "GREM2", "type": "recommended", "evidence": [ { "id": "F1S9G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9G0" } ] }, { "name": "GREM2", "type": "synonym", "evidence": [ { "id": "XP_005653823", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653823" } ] } ], "protein_names": [ { "name": "Gremlin 2, DAN family BMP antagonist", "type": "synonym", "evidence": [ { "id": "F1S9G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9G0/entry#names_and_taxonomy" } ] }, { "name": "gremlin-2", "type": "synonym", "evidence": [ { "id": "XP_005653823", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653823" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9G0", "url": "https://www.uniprot.org/uniprotkb/F1S9G0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GREM2", "url": "https://www.uniprot.org/uniprotkb/F1S9G0", "locus": { "chromosome": "10", "start_pos": 11885280, "end_pos": 11885780, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023289", "url": "https://www.ensembl.org/id/ENSSSCG00000023289" } ] } } ], "crossref": [ { "id": "F1S9G0", "url": "https://alphafold.ebi.ac.uk/entry/F1S9G0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023289", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023289", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521329", "url": "https://www.ncbi.nlm.nih.gov/gene/100521329", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521329", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521329", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YIPRHIK", "url": "https://omabrowser.org/oma/group/YIPRHIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9G0", "url": "https://www.orthodb.org/?gene=F1S9G0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15283", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15283", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15283:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15283:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03045", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03045", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-201451", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201451", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005653823", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653823", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S9G0", "url": "https://www.uniprot.org/uniprotkb/F1S9G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9G0-1", "url": "https://www.uniprot.org/uniprotkb/F1S9G0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFWKLSVSLLLMAALEKVEDAQRARPAGSIPSPRKDGSPESTGRWQLIKEVLASSQEALVVTERRYLRSDWCKTQPLRQTVHEEGCHSRTVLNRFCYGQCNSFFIPRPGGGSWGSFQSCAFCRPQRAAALLVELQCPGRDPPFHLRKIQKVKQCKCMSVTLGSDEP", "length": 166, "header": "tr|F1S9G0-1|F1S9G0_PIG Isoform 1 of Gremlin 2, DAN family BMP antagonist OS=Sus scrofa OX=9823 GN=GREM2 PE=3 SV=1 CANONICAL=F1S9G0-1" }, "isoforms": [ { "isoform_ac": "F1S9G0-1", "url": "https://www.uniprot.org/uniprotkb/F1S9G0/entry#F1S9G0-1", "sequence": { "sequence": "MFWKLSVSLLLMAALEKVEDAQRARPAGSIPSPRKDGSPESTGRWQLIKEVLASSQEALVVTERRYLRSDWCKTQPLRQTVHEEGCHSRTVLNRFCYGQCNSFFIPRPGGGSWGSFQSCAFCRPQRAAALLVELQCPGRDPPFHLRKIQKVKQCKCMSVTLGSDEP", "length": 166, "header": "tr|F1S9G0-1|F1S9G0_PIG Isoform 1 of Gremlin 2, DAN family BMP antagonist OS=Sus scrofa OX=9823 GN=GREM2 PE=3 SV=1 CANONICAL=F1S9G0-1" }, "locus": { "chromosome": "10", "start_pos": 11885780, "end_pos": 11885283, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031842.2", "url": "https://www.ensembl.org/id/ENSSSCT00000031842.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025743.1", "url": "https://www.ensembl.org/id/ENSSSCP00000025743.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9G0", "url": "https://www.uniprot.org/uniprotkb/F1S9G0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521329", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521329", "resource": "KEGG Pathway" }, { "id": "R-SSC-201451", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201451", "resource": "Reactome", "description": "Signaling by BMP" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZXD0-1", "protein_name": "Gremlin", "gene_name": "Grem2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFWKLSLTLLLVAVLVKVAETRKNRPAGAIPSPYKDGSTNNSERWHHQIKEVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEDSFQSCAFCKPQRVTSVIVELECPGLDPPFRIKKIQKVKHCRCMSVNLSDSDKQ", "length": 168 }, "evidence": [ { "id": "F1S9G0", "url": "https://omabrowser.org/oma/group/F1S9G0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3H6M6-1", "protein_name": "Gremlin", "gene_name": "Grem2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFWKLSLTLLLVAVLVKVAETRKNRPAGAIPSPYKDGSSNNSERWHHQIKEVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEDSFQSCAFCKPQRVTSVIVELECPGLDPPFRIKKIQKVKHCRCMSVNLSDSDKQ", "length": 168 }, "evidence": [ { "id": "F1S9G0", "url": "https://omabrowser.org/oma/group/F1S9G0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O88273-1", "protein_name": "Gremlin-2", "gene_name": "Grem2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFWKLSLTLLLVAVLVKVAETRKNRPAGAIPSPYKDGSSNNSERWHHQIKEVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEDSFQSCAFCKPQRVTSVIVELECPGLDPPFRIKKIQKVKHCRCMSVNLSDSDKQ", "length": 168 }, "evidence": [ { "id": "F1S9G0", "url": "https://omabrowser.org/oma/group/F1S9G0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H772-1", "protein_name": "Gremlin-2", "gene_name": "GREM2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFWKLSLSLFLVAVLVKVAEARKNRPAGAIPSPYKDGSSNNSERWQHQIKEVLASSQEALVVTERKYLKSDWCKTQPLRQTVSEEGCRSRTILNRFCYGQCNSFYIPRHVKKEEESFQSCAFCKPQRVTSVLVELECPGLDPPFRLKKIQKVKQCRCMSVNLSDSDKQ", "length": 168 }, "evidence": [ { "id": "F1S9G0", "url": "https://omabrowser.org/oma/group/F1S9G0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sequestering of BMP from receptor via BMP binding", "id": "GO:0038098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038098", "evidence": [ { "database": "UniProtKB", "id": "F1S9G0", "url": "https://www.uniprot.org/uniprotkb/F1S9G0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1S9G0", "url": "https://www.uniprot.org/uniprotkb/F1S9G0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "receptor ligand activity", "id": "GO:0048018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048018", "evidence": [ { "database": "UniProtKB", "id": "F1S9G0", "url": "https://www.uniprot.org/uniprotkb/F1S9G0" } ], "pmid": "" }, { "name": "BMP binding", "id": "GO:0036122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036122", "evidence": [ { "database": "UniProtKB", "id": "F1S9G0", "url": "https://www.uniprot.org/uniprotkb/F1S9G0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9G0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 166, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9G0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9G0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9G0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9G0" }, { "id": "SM00041", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CTCK", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 161, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9M3-1", "uniprot_ac": "F1S9M3", "uniprot_id": "F1S9M3_PIG", "mass": { "chemical_mass": 34942.0, "monoisotopic_mass": 34942.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1S9M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9M3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9M3", "url": "https://www.uniprot.org/uniprotkb/F1S9M3#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9M3", "url": "https://www.uniprot.org/uniprotkb/F1S9M3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1S9M3", "locus": {} } ], "crossref": [ { "id": "F1S9M3", "url": "https://alphafold.ebi.ac.uk/entry/F1S9M3", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S9M3", "url": "https://www.uniprot.org/uniprotkb/F1S9M3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9M3-1", "url": "https://www.uniprot.org/uniprotkb/F1S9M3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLMEKEDPNQTVVDSFFLEGLMYTAEHPSLFFLLFLLIYGITITGNLLILITVGSDPHLCSTMYHFLDAWLSTVTVPKVMDGLLTLDGKVISFEGCALQLYGFHFLASTECFLYTVMAYDRYLAICRPLYYPAAMNRRMCAGLAGITWSLGAVHSAIHTSLTFHLPYCGPRHIAYFFCDIPPVLKLACADTTINELVMLANIGIVAAGCLILIVVSYSFIVTAVVRIHTAEGRQRAFSTCTSHLTVVLLYYMPPVSIYLQPRSGAARAGASAVFYTIVTPVLNPFIYTLRNREVKRALRRFLGQGSPESPAGNPPP", "length": 316, "header": "tr|F1S9M3-1|F1S9M3_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1S9M3-1" }, "isoforms": [ { "isoform_ac": "F1S9M3-1", "url": "https://www.uniprot.org/uniprotkb/F1S9M3/entry#F1S9M3-1", "sequence": { "sequence": "MLMEKEDPNQTVVDSFFLEGLMYTAEHPSLFFLLFLLIYGITITGNLLILITVGSDPHLCSTMYHFLDAWLSTVTVPKVMDGLLTLDGKVISFEGCALQLYGFHFLASTECFLYTVMAYDRYLAICRPLYYPAAMNRRMCAGLAGITWSLGAVHSAIHTSLTFHLPYCGPRHIAYFFCDIPPVLKLACADTTINELVMLANIGIVAAGCLILIVVSYSFIVTAVVRIHTAEGRQRAFSTCTSHLTVVLLYYMPPVSIYLQPRSGAARAGASAVFYTIVTPVLNPFIYTLRNREVKRALRRFLGQGSPESPAGNPPP", "length": 316, "header": "tr|F1S9M3-1|F1S9M3_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1S9M3-1" }, "locus": { "chromosome": "9", "start_pos": 50910098, "end_pos": 50909151, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016528.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016528.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016085.5", "url": "https://www.ensembl.org/id/ENSSSCP00000016085.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9M3", "url": "https://www.uniprot.org/uniprotkb/F1S9M3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S9M3", "url": "https://www.uniprot.org/uniprotkb/F1S9M3" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S9M3", "url": "https://www.uniprot.org/uniprotkb/F1S9M3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9M3", "url": "https://www.uniprot.org/uniprotkb/F1S9M3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1S9M3", "url": "https://www.uniprot.org/uniprotkb/F1S9M3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9M3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9M3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9M3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9M3" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 287, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9N1-1", "uniprot_ac": "F1S9N1", "uniprot_id": "F1S9N1_PIG", "mass": { "chemical_mass": 34579.0, "monoisotopic_mass": 34579.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1S9N1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9N1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1S9N1", "locus": {} } ], "crossref": [ { "id": "F1S9N1", "url": "https://alphafold.ebi.ac.uk/entry/F1S9N1", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1S9N1", "url": "https://www.orthodb.org/?gene=F1S9N1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9N1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPGNVSSVTEFILLGLTQQPELQLPLFYIFLGTYVVTMVGNVGLVILIGLNPHLHTPMYYFLFNLSFVDLCYSSVITPKMLMTFVNRNIISHAECMAQLYFFSFFVIDECFILTSMAYDRYVAICKPLLYKVSMSHQVCLMLTVGAYVMGLVGAVAHTGCMLRLSFCDGNIINHYMCDIPPLLQLSCTSTYINELVVFIVVGISLIVPSLTISISYALILSSVLRIRSTEGRSKAFSTCSSHITVVSLFFGSSAFMYLKPFPAGSLDEEKVSTVFYTIVGPMMNPFIYSLRNKDVQMALSKTLRKRVIS", "length": 310, "header": "tr|F1S9N1-1|F1S9N1_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1S9N1-1" }, "isoforms": [ { "isoform_ac": "F1S9N1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1/entry#F1S9N1-1", "sequence": { "sequence": "MAPGNVSSVTEFILLGLTQQPELQLPLFYIFLGTYVVTMVGNVGLVILIGLNPHLHTPMYYFLFNLSFVDLCYSSVITPKMLMTFVNRNIISHAECMAQLYFFSFFVIDECFILTSMAYDRYVAICKPLLYKVSMSHQVCLMLTVGAYVMGLVGAVAHTGCMLRLSFCDGNIINHYMCDIPPLLQLSCTSTYINELVVFIVVGISLIVPSLTISISYALILSSVLRIRSTEGRSKAFSTCSSHITVVSLFFGSSAFMYLKPFPAGSLDEEKVSTVFYTIVGPMMNPFIYSLRNKDVQMALSKTLRKRVIS", "length": 310, "header": "tr|F1S9N1-1|F1S9N1_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1S9N1-1" }, "locus": { "chromosome": "9", "start_pos": 51414212, "end_pos": 51413283, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016520.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016520.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016077.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016077.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1" } ], "pmid": "" }, { "name": "sensory perception of smell", "id": "GO:0007608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007608", "evidence": [ { "database": "UniProtKB", "id": "F1S9N1", "url": "https://www.uniprot.org/uniprotkb/F1S9N1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9N1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 310, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9N1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9N1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9N1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9N1" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9P7-1", "uniprot_ac": "F1S9P7", "uniprot_id": "F1S9P7_PIG", "mass": { "chemical_mass": 34909.0, "monoisotopic_mass": 34909.0 }, "refseq": {}, "gene_names": [ { "name": "OR6X1", "type": "recommended", "evidence": [ { "id": "F1S9P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9P7" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1S9P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9P7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9P7", "url": "https://www.uniprot.org/uniprotkb/F1S9P7#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9P7", "url": "https://www.uniprot.org/uniprotkb/F1S9P7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR6X1", "url": "https://www.uniprot.org/uniprotkb/F1S9P7", "locus": { "chromosome": "9", "start_pos": 50613020, "end_pos": 50613958, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015146", "url": "https://www.ensembl.org/id/ENSSSCG00000015146" } ] } } ], "crossref": [ { "id": "F1S9P7", "url": "https://alphafold.ebi.ac.uk/entry/F1S9P7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504901", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504901", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KAMTCPK", "url": "https://omabrowser.org/oma/group/KAMTCPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9P7", "url": "https://www.orthodb.org/?gene=F1S9P7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S9P7", "url": "https://www.uniprot.org/uniprotkb/F1S9P7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9P7-1", "url": "https://www.uniprot.org/uniprotkb/F1S9P7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNGTAITEFILLGFPGIQGLQAPLFIVIFFIYILTLAGNGLIIAIVWAEPRLRIPMYFFLCNLSFLEIWYTTTVLPKLLETLLVARTAICTPCCLLQAFFHFFLGTTEFFILTIMSFDRYLAICKPLHYPTIMSSKLCLQLALSSWVVGFTIVFCQMVLLIQLPFCGNNVINHFYCDVGPILKAACTDTSILELLGLLATILVIPGSLLFTIVSYIYILSTILRIPSATGRQKAFSTCASHLTVVSLLYGAVLFMYLRPTAHSSFKMNKVVSVLNTILTPLLNPFIYTIRNKEVKGALRKAMVCPKTHHPV", "length": 312, "header": "tr|F1S9P7-1|F1S9P7_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR6X1 PE=3 SV=2 CANONICAL=F1S9P7-1" }, "isoforms": [ { "isoform_ac": "F1S9P7-1", "url": "https://www.uniprot.org/uniprotkb/F1S9P7/entry#F1S9P7-1", "sequence": { "sequence": "MRNGTAITEFILLGFPGIQGLQAPLFIVIFFIYILTLAGNGLIIAIVWAEPRLRIPMYFFLCNLSFLEIWYTTTVLPKLLETLLVARTAICTPCCLLQAFFHFFLGTTEFFILTIMSFDRYLAICKPLHYPTIMSSKLCLQLALSSWVVGFTIVFCQMVLLIQLPFCGNNVINHFYCDVGPILKAACTDTSILELLGLLATILVIPGSLLFTIVSYIYILSTILRIPSATGRQKAFSTCASHLTVVSLLYGAVLFMYLRPTAHSSFKMNKVVSVLNTILTPLLNPFIYTIRNKEVKGALRKAMVCPKTHHPV", "length": 312, "header": "tr|F1S9P7-1|F1S9P7_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR6X1 PE=3 SV=2 CANONICAL=F1S9P7-1" }, "locus": { "chromosome": "9", "start_pos": 50613958, "end_pos": 50613023, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016512.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016512.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016069.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016069.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9P7", "url": "https://www.uniprot.org/uniprotkb/F1S9P7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504901", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504901", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061I0H3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100760226", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRNGTAITEFILLGFPGIQGLQALLFIVIFLIYILTLSGNGLIIFIVWVEPRLQTPMYFFLCNLAFLEIWYTTTVIPKLLETFVVSKTVICTACCLLQAFFHFFLGTTEFLILGTMSFDRYLAICKPLRYPTIMTSNLCMQLALSSWLAGFTIVFCQTMLLVQLPFCGNNVINHFYCDVGPILKAACADTSILELLGLLATILVIPGSLLFTIISYIYILSTILRIPSATGRQKAFSTCASHLTVVSLLYGAVLFMYLRPTAHSSFKINKVVSVLNTILTPLLNPFIYTIRNKEVKGALGKAVTCSKAHHAK", "length": 312 }, "evidence": [ { "id": "F1S9P7", "url": "https://omabrowser.org/oma/group/F1S9P7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8NH79-1", "protein_name": "Olfactory receptor 6X1", "gene_name": "OR6X1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRNGTVITEFILLGFPVIQGLQTPLFIAIFLTYILTLAGNGLIIATVWAEPRLQIPMYFFLCNLSFLEIWYTTTVIPKLLGTFVVARTVICMSCCLLQAFFHFFVGTTEFLILTIMSFDRYLTICNPLHHPTIMTSKLCLQLALSSWVVGFTIVFCQTMLLIQLPFCGNNVISHFYCDVGPSLKAACIDTSILELLGVIATILVIPGSLLFNMISYIYILSAILRIPSATGHQKTFSTCASHLTVVSLLYGAVLFMYLRPTAHSSFKINKVVSVLNTILTPLLNPFIYTIRNKEVKGALRKAMTCPKTGHAK", "length": 312 }, "evidence": [ { "id": "F1S9P7", "url": "https://omabrowser.org/oma/group/F1S9P7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VFN6-1", "protein_name": "Olfactory receptor", "gene_name": "Or6x1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRNGTAITEFILLGFPGIQGSEALLFIVIFLIYILTLSGNGLIIVIVWVEPRLQTPMYFFLCNLAFLEIWYTTTVIPKLLETFVVSKTVICTACCLLQAFFHFFLGTTEFLILGSMSFDRYLAICKPLRYPTIMTSNLCLQLALSSWLAGFTIVFCQTMLIVQLPFCGNNVINHFYCDVGPILKAACADTSILELLGLLATILVIPGSLLFTIISYIYILSTILRIPSATGRQKAFSTCASHLTVVSLLYGAVLFMYLRPTAHSSFKINKVVSVLNTILTPLLNPFIYTIRNKEVKGALRKAITCANRHHAK", "length": 312 }, "evidence": [ { "id": "F1S9P7", "url": "https://omabrowser.org/oma/group/F1S9P7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S9P7", "url": "https://www.uniprot.org/uniprotkb/F1S9P7" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S9P7", "url": "https://www.uniprot.org/uniprotkb/F1S9P7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9P7", "url": "https://www.uniprot.org/uniprotkb/F1S9P7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9P7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9P7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9P7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9P7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9P7" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9P8-1", "uniprot_ac": "F1S9P8", "uniprot_id": "F1S9P8_PIG", "mass": { "chemical_mass": 73372.0, "monoisotopic_mass": 73372.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF202", "type": "recommended", "evidence": [ { "id": "F1S9P8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ] } ], "protein_names": [ { "name": "Zinc finger protein 202", "type": "synonym", "evidence": [ { "id": "F1S9P8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9P8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF202", "url": "https://www.uniprot.org/uniprotkb/F1S9P8", "locus": { "chromosome": "9", "start_pos": 50584250, "end_pos": 50605567, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015145", "url": "https://www.ensembl.org/id/ENSSSCG00000015145" } ] } } ], "crossref": [ { "id": "F1S9P8", "url": "https://alphafold.ebi.ac.uk/entry/F1S9P8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015145", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015145", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF190", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF190", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9P8-1", "url": "https://www.uniprot.org/uniprotkb/F1S9P8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LE10", "url": "https://www.uniprot.org/uniprotkb/I3LE10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LE10-1", "url": "https://www.uniprot.org/uniprotkb/I3LE10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "DITPELPTLSIPGGSKPSRSSHPTPRTVSSVAEAREEDKGADLRAARAGTVPYRLAWRIAELGAGPEARERRGGSDTGGGFAETTQETKAVTVHVHGQEVLSEETVHPGAEPESPSELQDPAQTLTPEESPEETTQSPDLGAPEEQSLCQELEFQPLQESGFSAPEPSPSRREEPCKPRGGGPSNCSITAHGSSSADWDCSCGLHHSHSNTGSECHLRPHCSLQQHWLLNSLSKARDQTCILTAATQGLVTFKDVAVCFSQDQWSDLDPTQKEFYGEYVLEEDCGIVVSLSFPIPRLDEIAHIEEEERSTPDIPEPQEPDILSFTYTGDRSEDEEEYPEHEDVSVEDLHRSVLGDTEVHQTPDWEIVFEDGPGRLNGRRCGTNTSQVNSLTSLRETLPLQPMSGRHHDCPVCGKSFTCNSHLVRHLRTHTGEKPYKCMECGKSYTRSSHLARHQKVHKMSASYKYPLNRKNADEPSPLVQAERIPPIEKPYRCDDCGKHFRWTSDLVRHQRTHTGEKPFFCTICGKSFSQKSVLTTHQRIHLGGKPYLCGECGEDFSDHRRYLAHRKTHAAEELYLCSECGRCFSHSAAFAKHLRGHASVRPCRCTECGKSFSRRDHLVRHQRTHTGEKPFTCPTCGKSFSRGYHLIRHQRTHSEKT", "length": 657, "header": "tr|F1S9P8-1|F1S9P8_PIG Isoform 1 of Zinc finger protein 202 OS=Sus scrofa OX=9823 GN=ZNF202 PE=4 SV=4 CANONICAL=F1S9P8-1" }, "isoforms": [ { "isoform_ac": "F1S9P8-1", "url": "https://www.uniprot.org/uniprotkb/F1S9P8/entry#F1S9P8-1", "sequence": { "sequence": "DITPELPTLSIPGGSKPSRSSHPTPRTVSSVAEAREEDKGADLRAARAGTVPYRLAWRIAELGAGPEARERRGGSDTGGGFAETTQETKAVTVHVHGQEVLSEETVHPGAEPESPSELQDPAQTLTPEESPEETTQSPDLGAPEEQSLCQELEFQPLQESGFSAPEPSPSRREEPCKPRGGGPSNCSITAHGSSSADWDCSCGLHHSHSNTGSECHLRPHCSLQQHWLLNSLSKARDQTCILTAATQGLVTFKDVAVCFSQDQWSDLDPTQKEFYGEYVLEEDCGIVVSLSFPIPRLDEIAHIEEEERSTPDIPEPQEPDILSFTYTGDRSEDEEEYPEHEDVSVEDLHRSVLGDTEVHQTPDWEIVFEDGPGRLNGRRCGTNTSQVNSLTSLRETLPLQPMSGRHHDCPVCGKSFTCNSHLVRHLRTHTGEKPYKCMECGKSYTRSSHLARHQKVHKMSASYKYPLNRKNADEPSPLVQAERIPPIEKPYRCDDCGKHFRWTSDLVRHQRTHTGEKPFFCTICGKSFSQKSVLTTHQRIHLGGKPYLCGECGEDFSDHRRYLAHRKTHAAEELYLCSECGRCFSHSAAFAKHLRGHASVRPCRCTECGKSFSRRDHLVRHQRTHTGEKPFTCPTCGKSFSRGYHLIRHQRTHSEKT", "length": 657, "header": "tr|F1S9P8-1|F1S9P8_PIG Isoform 1 of Zinc finger protein 202 OS=Sus scrofa OX=9823 GN=ZNF202 PE=4 SV=4 CANONICAL=F1S9P8-1" }, "locus": { "chromosome": "9", "start_pos": 50590712, "end_pos": 50585573, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016511.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016511.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016068.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016068.4" } ] } }, { "isoform_ac": "I3LE10-1", "url": "https://www.uniprot.org/uniprotkb/F1S9P8/entry#I3LE10-1", "sequence": { "sequence": "MATALEPEDQDLWEEEGILMVKLEDDFTCRPESVSQRDDPVLETSHQNFRRFRYQEAASPREALIRLRELCHQWLRPERRTKEQILELLVLEQFLTVLPGELQSWVRGQRPESGEEAVTLVEGLQKQPRRPRRWNYSQVTVHVHGQEVLSEETVHPGAEPESPSELQDPAQTLTPEESPEETTQSPDLGAPEEQSLCQELEFQPLQESEVSVPQNPALPEERNPANPEVVALLTALSQGLVTFKDVAVCFSQDQWSDLDPTQKEFYGEYVLEEDCGIVVSLSFPIPRLDEIAHIEEEERSTPDIPEPQEPDILSFTYTGDRSEDEEEYPEHEDVSVEDLHRSVLGDTEVHQTPDWEIVFEDGPGRLNGRRCGTNTSQVNSLTSLRETLPLQPMSGRHHDCPVCGKSFTCNSHLVRHLRTHTGEKPYKCMECGKSYTRSSHLARHQKVHKMSASYKYPLNRKNADEPSPLVQAERIPPIEKPYRCDDCGKHFRWTSDLVRHQRTHTGEKPFFCTICGKSFSQKSVLTTHQRIHLGGKPYLCGECGEDFSDHRRYLAHRKTHAAEELYLCSECGRCFSHSAAFAKHLRGHASVRPCRCTECGKSFSRRDHLVRHQRTHTGEKPFTCPTCGKSFSRGYHLIRHQRTHSEKT", "length": 648, "header": "tr|I3LE10-1|F1S9P8_PIG Computationally mapped isoform of Zinc finger protein 202 OS=Sus scrofa OX=9823 GN=ZNF202 PE=4 SV=3 CANONICAL=F1S9P8-1" }, "locus": { "chromosome": "9", "start_pos": 50590840, "end_pos": 50585573, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028370.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028370.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022295.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022295.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LE10", "url": "https://www.uniprot.org/uniprotkb/I3LE10" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "F1S9P8", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9P8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 657, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9P8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9P8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9P8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 407, "end_pos": 434, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S9P8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9P8" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 250, "end_pos": 322, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 185, "end_pos": 187 }, { "start_pos": 383, "end_pos": 385 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9Q4-1", "uniprot_ac": "F1S9Q4", "uniprot_id": "F1S9Q4_PIG", "mass": { "chemical_mass": 25836.0, "monoisotopic_mass": 25836.0 }, "refseq": { "ac": "XP_003482678", "name": "brain-specific homeobox protein homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482678" }, "gene_names": [ { "name": "BSX", "type": "recommended", "evidence": [ { "id": "F1S9Q4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ] }, { "name": "BSX", "type": "synonym", "evidence": [ { "id": "XP_003482678", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482678" } ] } ], "protein_names": [ { "name": "Brain-specific homeobox protein homolog", "type": "recommended", "evidence": [ { "id": "F1S9Q4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4/entry#names_and_taxonomy" } ] }, { "name": "brain-specific homeobox protein homolog", "type": "synonym", "evidence": [ { "id": "XP_003482678", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482678" } ] } ], "function": [ { "annotation": "DNA binding protein that function as transcriptional activator. Is essential for normal postnatal growth and nursing. Is an essential factor for neuronal neuropeptide Y and agouti-related peptide function and locomotory behavior in the control of energy balance.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4#function" }, { "database": "UniProtKB", "id": "ARBA00053930", "url": "https://www.uniprot.org/uniprotkb/ARBA00053930#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BSX", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4", "locus": { "chromosome": "9", "start_pos": 49905428, "end_pos": 49909226, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015139", "url": "https://www.ensembl.org/id/ENSSSCG00000015139" } ] } } ], "crossref": [ { "id": "F1S9Q4", "url": "https://alphafold.ebi.ac.uk/entry/F1S9Q4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015139", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015139", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100738917", "url": "https://www.ncbi.nlm.nih.gov/gene/100738917", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050848", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050848", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738917", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738917", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DLPGKHC", "url": "https://omabrowser.org/oma/group/DLPGKHC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9Q4", "url": "https://www.orthodb.org/?gene=F1S9Q4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24333", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24333", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24333:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24333:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003482678", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482678", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9Q4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTLLAPHPHHPLHKGDHHHPYFLTTSGVPVPALFPHPQHTELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRGAEAAPAEARLGLPAGPFVLTEPEDEVDIGDEGELGSGPHVL", "length": 232, "header": "tr|F1S9Q4-1|F1S9Q4_PIG Isoform 1 of Brain-specific homeobox protein homolog OS=Sus scrofa OX=9823 GN=BSX PE=3 SV=1 CANONICAL=F1S9Q4-1" }, "isoforms": [ { "isoform_ac": "F1S9Q4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4/entry#F1S9Q4-1", "sequence": { "sequence": "MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTLLAPHPHHPLHKGDHHHPYFLTTSGVPVPALFPHPQHTELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRGAEAAPAEARLGLPAGPFVLTEPEDEVDIGDEGELGSGPHVL", "length": 232, "header": "tr|F1S9Q4-1|F1S9Q4_PIG Isoform 1 of Brain-specific homeobox protein homolog OS=Sus scrofa OX=9823 GN=BSX PE=3 SV=1 CANONICAL=F1S9Q4-1" }, "locus": { "chromosome": "9", "start_pos": 49909226, "end_pos": 49905431, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016505.2", "url": "https://www.ensembl.org/id/ENSSSCT00000016505.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016062.1", "url": "https://www.ensembl.org/id/ENSSSCP00000016062.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 61, "start_aa": "Thr", "end_pos": 61, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr61", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738917", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738917", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A5F6-1", "protein_name": "Brain-specific homeobox protein homolog", "gene_name": "Bsx", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTLLTPHTHHPLHKGEHHHPYFLATSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAADGPESPEGSPRAPEGAPADARLSLPAGAFVLTEPEDEVDIGDEGELSSGPHVL", "length": 232 }, "evidence": [ { "id": "F1S9Q4", "url": "https://omabrowser.org/oma/group/F1S9Q4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BAF5-1", "protein_name": "Brain-specific homeobox protein homolog", "gene_name": "BSX", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFTSTLASRVPLLDYGYPLMPTPTLLAPHPHHPLHKGDHHHPYFLTTSGVPVPALFPHPQHPELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRGPEAAPAEARLGLPAGSFVLTEPEDEVDIGDEAELGSGPHVL", "length": 232 }, "evidence": [ { "id": "F1S9Q4", "url": "https://omabrowser.org/oma/group/F1S9Q4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3C1V8-1", "protein_name": "Brain-specific homeobox protein homolog", "gene_name": "BSX", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTLLAPHAHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAPDGPESPEGSPRGSEAATAAEARLSLPAGPFVLTEPEDEVDIGDEGELGSGPHVL", "length": 233 }, "evidence": [ { "id": "F1S9Q4", "url": "https://omabrowser.org/oma/group/F1S9Q4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6R3Q6-1", "protein_name": "Brain-specific homeobox protein homolog", "gene_name": "bsx", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNLNYTSPVPQMPTQRSTSFFIEDILLHKPKPLREVFPSPFSNSIASRMPLLEYGYPLMPTPILAPHPHHPLHKPEHHPYFFTSGMQMPALFQHHPELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKTQDDQKTPNDVDRSLENTSESEMHEKNTDGKNGMSPDRYTLDDNEDDVDIEDDICSPEHLL", "length": 227 }, "evidence": [ { "id": "F1S9Q4", "url": "https://omabrowser.org/oma/group/F1S9Q4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6RFL5-1", "protein_name": "Brain-specific homeobox protein homolog", "gene_name": "BSX", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNLNFTSPVHPVPAPRPTSFFIEDILLHKPKPLREVPPEHFAGSLASRVPLLDYGYPLMPAPALLAPHPHPALHKPEHHHHHPYFLTTSGVPVPALFPHHAHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDDPIHEENREQSSPEPELPEPAAAEPRKGPPGPFLLQDPEDEVDILEEGDILAAPHRL", "length": 233 }, "evidence": [ { "id": "F1S9Q4", "url": "https://omabrowser.org/oma/group/F1S9Q4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q810B3-1", "protein_name": "Brain-specific homeobox protein homolog", "gene_name": "Bsx", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNLNFTSPLHPASSQRPTSFFIEDILLHKPKPLREVAPDHFASSLASRVPLLDYGYPLMPTPTLLTPHAHHPLHKGDHHHPYFLTTSGMPVPALFPHPQHAELPGKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMKHKKQLRKSQDEPKAADGPESPEGSPRAPEGAPADARLSLPAGAFVLTEPEDEVDIGDEGELSSGPHVL", "length": 232 }, "evidence": [ { "id": "F1S9Q4", "url": "https://omabrowser.org/oma/group/F1S9Q4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "pmid": "" }, { "name": "eating behavior", "id": "GO:0042755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042755", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "pmid": "" }, { "name": "stem cell population maintenance", "id": "GO:0019827", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019827", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q4", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9Q4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 232, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9Q4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9Q4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9Q4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Q4" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 108, "end_pos": 168, "start_aa": "Cys", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 61 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9Q5-1", "uniprot_ac": "F1S9Q5", "uniprot_id": "F1S9Q5_PIG", "mass": { "chemical_mass": 87539.0, "monoisotopic_mass": 87539.0 }, "refseq": {}, "gene_names": [ { "name": "JHY", "type": "recommended", "evidence": [ { "id": "F1S9Q5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5" } ] } ], "protein_names": [ { "name": "Junctional cadherin complex regulator", "type": "synonym", "evidence": [ { "id": "F1S9Q5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9Q5", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "JHY", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5", "locus": { "chromosome": "9", "start_pos": 49888860, "end_pos": 49826501, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015138", "url": "https://www.ensembl.org/id/ENSSSCG00000015138" } ] } } ], "crossref": [ { "id": "F1S9Q5", "url": "https://alphafold.ebi.ac.uk/entry/F1S9Q5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015138", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015138", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027968", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027968", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WKFHPSS", "url": "https://omabrowser.org/oma/group/WKFHPSS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9Q5", "url": "https://www.orthodb.org/?gene=F1S9Q5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14726", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14726", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14726:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14726:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15261", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15261", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S9Q5", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9Q5-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHSKLIPKLSIQSPVHHTNLKVQSTEPPFKKEDLHLISKDSLESGSESLTQEIKCQSELEDRMQDNDMEPDSLEEDSLSETEEEASRKAAQVASKKNLHTRNAGANNSQQPTEDKYSDLRYDPNWKSKNKEGRLLAVEASPESAGSSMENMTLGPLYPSKEASMELSGGNGEQKKSPQSTASLLGSEFVSPNYERVAHHRSELFSEGSDSDQQEKSSDLSQYLKSSSSHSEVFLPGSRGPRRRKSRQYFVEKNKLTLGLPTPKMDSYLQLHHKKRGDTHPEQISYPIRVTDKTPIQNARETGNAAIDPEDKWHQRAQQLKDYQEHWSQYESAKSSSGPRGQPSETTNGQQPSRRPAKHKVRKQHKHRHGPKSLVTEELAVSQGNQNNIPRQQQKHNKPTDASVKHETVVVMNAPDNDVQHSSVLRSQGPAVTSNKFAPPQQAFDKVLYKNSTGYHAVVNINRERGHKDQEEKRFYQQLHFNTLSNTDLNYLHELAEKQVSFSQKGFQSISNVNVNGSTDKKQQPKQTYTETKYKNLEILWKFHSSSDSQPIRASPDSRLAQIMEQHQQALMQLTEVQPHEGALSGVTLPPILSRVESESQLSSEKSQRNQVKISRSNSEGYLFQLEKGEKHRKRSGPKSSKLKGYPHRDMKLGGLGPDLESIRDKMQKLIQQKEYAKQVKEHNMKTLSLLSKPQTAKTENKSAVPRQKALEYAKTIPKPKPSNLSDQTSKEKKNPTHAGKEDPLPEISLLEILQNRHEREKQAVAAFKVLHIV", "length": 774, "header": "tr|F1S9Q5-1|F1S9Q5_PIG Isoform 1 of Junctional cadherin complex regulator OS=Sus scrofa OX=9823 GN=JHY PE=4 SV=2 CANONICAL=F1S9Q5-1" }, "isoforms": [ { "isoform_ac": "F1S9Q5-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5/entry#F1S9Q5-1", "sequence": { "sequence": "MSHSKLIPKLSIQSPVHHTNLKVQSTEPPFKKEDLHLISKDSLESGSESLTQEIKCQSELEDRMQDNDMEPDSLEEDSLSETEEEASRKAAQVASKKNLHTRNAGANNSQQPTEDKYSDLRYDPNWKSKNKEGRLLAVEASPESAGSSMENMTLGPLYPSKEASMELSGGNGEQKKSPQSTASLLGSEFVSPNYERVAHHRSELFSEGSDSDQQEKSSDLSQYLKSSSSHSEVFLPGSRGPRRRKSRQYFVEKNKLTLGLPTPKMDSYLQLHHKKRGDTHPEQISYPIRVTDKTPIQNARETGNAAIDPEDKWHQRAQQLKDYQEHWSQYESAKSSSGPRGQPSETTNGQQPSRRPAKHKVRKQHKHRHGPKSLVTEELAVSQGNQNNIPRQQQKHNKPTDASVKHETVVVMNAPDNDVQHSSVLRSQGPAVTSNKFAPPQQAFDKVLYKNSTGYHAVVNINRERGHKDQEEKRFYQQLHFNTLSNTDLNYLHELAEKQVSFSQKGFQSISNVNVNGSTDKKQQPKQTYTETKYKNLEILWKFHSSSDSQPIRASPDSRLAQIMEQHQQALMQLTEVQPHEGALSGVTLPPILSRVESESQLSSEKSQRNQVKISRSNSEGYLFQLEKGEKHRKRSGPKSSKLKGYPHRDMKLGGLGPDLESIRDKMQKLIQQKEYAKQVKEHNMKTLSLLSKPQTAKTENKSAVPRQKALEYAKTIPKPKPSNLSDQTSKEKKNPTHAGKEDPLPEISLLEILQNRHEREKQAVAAFKVLHIV", "length": 774, "header": "tr|F1S9Q5-1|F1S9Q5_PIG Isoform 1 of Junctional cadherin complex regulator OS=Sus scrofa OX=9823 GN=JHY PE=4 SV=2 CANONICAL=F1S9Q5-1" }, "locus": { "chromosome": "9", "start_pos": 49887374, "end_pos": 49829378, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016504.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016504.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016061.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016061.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q5", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A3U7-1", "protein_name": "Junctional cadherin complex regulator", "gene_name": "JHY", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDASGTEYVMVSSPYTFHVSNECFPQSQLTQPRFHPASWKRSPASEGSIGSELRDCQDSDSESLVLERQYQLELQQRIRANDELVGLSAGELENDSLEEEDSLEKMSSEEQEGAKYGTVQYTHRVPKKESDGREQQPVDKYFSLKYNPNWRNTKEALEFCEVEKTHHVAEGGSVDLSQDSFYLHSSGSSEEKNQQEAKFQESFSEFGTELLSFHEPNAFVCSEPFRLHTRGNESSDGYYFKDSPSTYSSAFSLQIPEDRPQRAKKDFVEKNKRTLGLRTDKNKSYLQLHGKKEEVIQEQVADTKTVDEEPVQSALPYPNMKMHPEDKWCLNSQRLKDHQNKWSQRNKVKSNQNLEGRDFSRSDNHQPAGRPAKPRSWHYRHHQMSEFQTAPMQAVEQDNSSALQNWLYPNPSVGPDTNTAANSDTCLNNFPACTRKRNKNCQLDHPNGLPHGQQHLYNHATVPFFPRDGSTSGQAHPNQKKSSTFNANYQEMVKDQVLLQDCKRHIYATSSLWPSQASVHSSPAAFCTVSELTQTMEQQNQEMTCLREADDLHSFSPLLPLIPHLESDSEVDPERGEGNQVKISRSNSEGYLMQMEKQKQHKVCKKPYSSKACINLDVKLGGLGPDYEAIKEKKEKLKQQKEYAQRIKEHNMKNIALVQRLPTKPQVISSVSRQKALEYAKKIPKPKTLTARQSNEEVKEERVLLPSLKGDSLPPITSLETLRSRHEKEKQVVAAFRTLHIL", "length": 742 }, "evidence": [ { "id": "F1S9Q5", "url": "https://omabrowser.org/oma/group/F1S9Q5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9Q793-1", "protein_name": "Jhy protein", "gene_name": "Jhy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNKYKPVPKLSSQSPVHHTNLRIPPSGRPFKKEDFLNLISKDSLESDSESLPQEAKSWSDIKDQIQDKDMEPDSLEEDSPSETEEAVNRKAAHNTNREDLSAHDAGVNHSQHQVEDKYSDLRYDPNWKNKREEGQPLAGEALPGSADSSSENLPLAPLYPSREPSMGLSAGKGKEKKSPQSEASLLGSEFLSPKYERSTRQNGFFSELSDSDQEEKSSGLSQYLKSSSSHNDVFLPGSRGPRRRKSKQYFVEKNKLTLGLPMPKTDSYLQLHNKKRGETRLEQISYPVRDTDKMTVQNDKEVENTFMDPEDKWHQRAKQLKNYQEHLSQYEDTKSGNVPRGQSSDAANGQQPSRRTAKARVRKQRKHQKGLKSLGTKELVVSQNNQNNPFQQPQNQRQTADASAKHELAAQTNASNPNLQDARTLTHNPKVTSDSFVSPKQALDRALYKNSISGLNANKRRGHRREEERILYQPQPIYVFSDTHLQDFNELPHRHESPSQRAPQSDHHMNTHRSTKTKKPAKQPQAETKYKNIEMLWKFHSSSDMEPASASPDSRLAQIMEQHQQALMQLAEVQPSEGSLASIILPPILSRVESESQLNSERSHRHQVKMARSNSEGYLLQLERGKRHRKRSSTKSSKLKGYQKRDVKLGGLGPDFASVRDKMQMLMQQKEYAQQVKDYNMKALSILSKPQTSKTESKSAISRKKALDYAKTIPKPKPPNLPDQTAKKTKNSRHSEKEGGLPEISLLEILQSRHEREKQAVAAFKVLHIV", "length": 770 }, "evidence": [ { "id": "F1S9Q5", "url": "https://omabrowser.org/oma/group/F1S9Q5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LZA7-1", "protein_name": "Junctional cadherin complex regulator", "gene_name": "Jhy", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLWMNKYKPVPKRSSRSPVHHTNLRTPPSGRAFKEEDFNLISKDSLESDSESLPREAKFWSDIKDQIQDKDMEPDSLEEDSSSETEEAAHGTNREGLGAQGAGANHSHHQVEDKYSDLRYDPNWKNKKEEGQLLAVEALPESADSSSDNLPGAPLYPSREPSMRLSVGKGKEKRSPQSEASLLGSEFLSPKYECGTRQNEFFSELSDSDQEDQEEKSSDLSPYLKSSSSHNEVFLPGSRGPRRRKSRQYFVEKNKLTLGLPAPKTDSYLQLHNKKRGETRLEQISYPIRDAGKMTVQDDKGVENTFMDPEDKWHQRAKQLKNYQEHLSQCEDTKSGNVPRGQSSNAANVQQPSRRTAKARVQKQKKYQNGLKSLGTKEQVVSQNNQNNSLQQPQTQRLPMDTSSKHEPAAQMTASNPNLQDPRTLTHNPKVTSDPFFPPKETFDRVVYKNSVLGLNTNKRRGHRYKEEKRILYQQQPIYIFSDGDLQDFNELSHRHESLSQRGPQSDYRMNTHRSRSTKTKKPSKEPEAETKYKNIEMLWKLHSSSDMEPVSASPDSRLAQIMEQHQQALLQLAEVQPSEGSLSSTVFPPILSRVESESQLDSERSHKHQMRMARSNSEGYLLQLEKGKRHRKRSQSRTKSSKLKGYQKRDVKLGGLGPDFASIRDKMQTLLQQKEYAKQVKEYNMKTLSVLSKPQTSKTDSKSTISRKKALDYAKTIPKPKPPNLPYQTMKKTNNSKHSEKEGSLPEISLLEILQSRHEREKQAVAAFKVLHIV", "length": 776 }, "evidence": [ { "id": "F1S9Q5", "url": "https://omabrowser.org/oma/group/F1S9Q5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NUN7-1", "protein_name": "Jhy protein homolog", "gene_name": "JHY", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSKRKLIPKLSIQSPVLHTNLNVQSTHPPLKKEDLHRISKDSLESDSESLTQEIMCHSEFDDRIRGNGMEPDSLDEEESPRWGSLHEMEEEASGKAAQMAREQNHHTWDQGANNRQQPIEDKYSDLRYDPNWKSKKEEGQLLSVEALPESTDSSLENLPLAPLYPSQETSMELSGGKGEQKESPQSAASLLGSEFLSPNYEHGARRSKPFSELSDSDLEEKSSSLSPYVKSSSSHNEVFLPGSRGPRRRKSKQHFVEKNKLTLGLPTPKTDSYLQLHNKKRGESHPEQISYPVRVTDKTSIQNAKEMENAAIDPEDKWHQRAQQLKNYQEHWSQYESTKSSNVPRGQPSDMVNDHQPSRRPAKLKIRKQCKHQNGLKSSTTEEVTASQGNQNNPPRQQQNQNKPLDTSTKPESIVIMHASNNDVQASRALRSHNLKETSNTFAPPKQAFDKVLSKNSTGCDSGLNVNKERGHKDQEEKRFSYQQLHTLSDMDLNNLNELSKRHVLLSQKGSQFVYHINTHGSTKNKKQLKQPYTETKYRNLEMLWKFHSSSDSQTVRASPDSWLTQIMEQHQQALVQLTDVQPSEGALSSVTLPPILSRVESESQLSSERSQRNQVKISRSNSEGYLFQLEKGKKHKKRSSSKNTKLKGYQKRDVKLGGLGPDFESIRDKTQKLIQQKEYAKQVKEYNMKTLSILSKPQTEKTQKKSAIPRQKALEYAKTIPKPKPSNLTHQASKEQKNPTYAGKEESLPEISLLEILQNRHEREKQAVAAFKVLHIV", "length": 778 }, "evidence": [ { "id": "F1S9Q5", "url": "https://omabrowser.org/oma/group/F1S9Q5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q5", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5" } ], "pmid": "" }, { "name": "axoneme assembly", "id": "GO:0035082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035082", "evidence": [ { "database": "UniProtKB", "id": "F1S9Q5", "url": "https://www.uniprot.org/uniprotkb/F1S9Q5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 451, "end_pos": 453, "annotation": "n_glycosylation_sequon" }, { "start_pos": 516, "end_pos": 518, "annotation": "n_glycosylation_sequon" }, { "start_pos": 701, "end_pos": 703, "annotation": "n_glycosylation_sequon" }, { "start_pos": 724, "end_pos": 726, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9Q5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 774, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9Q5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9Q5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 151, "end_pos": 153 }, { "start_pos": 451, "end_pos": 453 }, { "start_pos": 516, "end_pos": 518 }, { "start_pos": 701, "end_pos": 703 }, { "start_pos": 724, "end_pos": 726 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9U7-1", "uniprot_ac": "F1S9U7", "uniprot_id": "F1S9U7_PIG", "mass": { "chemical_mass": 128286.0, "monoisotopic_mass": 128286.0 }, "refseq": { "ac": "XP_003123526", "name": "paired amphipathic helix protein Sin3b isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123526" }, "gene_names": [ { "name": "SIN3B", "type": "recommended", "evidence": [ { "id": "F1S9U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ] }, { "name": "SIN3B", "type": "synonym", "evidence": [ { "id": "XP_003123526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123526" } ] } ], "protein_names": [ { "name": "Paired amphipathic helix protein Sin3b", "type": "recommended", "evidence": [ { "id": "F1S9U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9U7/entry#names_and_taxonomy" } ] }, { "name": "Histone deacetylase complex subunit Sin3b", "type": "synonym", "evidence": [ { "id": "F1S9U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9U7/entry#names_and_taxonomy" } ] }, { "name": "Transcriptional corepressor Sin3b", "type": "synonym", "evidence": [ { "id": "F1S9U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9U7/entry#names_and_taxonomy" } ] }, { "name": "paired amphipathic helix protein Sin3b isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003123526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123526" } ] } ], "function": [ { "annotation": "Acts as a transcriptional repressor. Interacts with MXI1 to repress MYC responsive genes and antagonize MYC oncogenic activities. Interacts with MAD-MAX heterodimers by binding to MAD. The heterodimer then represses transcription by tethering SIN3B to DNA. Also forms a complex with FOXK1 which represses transcription. With FOXK1, regulates cell cycle progression probably by repressing cell cycle inhibitor genes expression. As part of the SIN3B complex represses transcription and counteracts the histone acetyltransferase activity of EP300 through the recognition H3K27ac marks by PHF12 and the activity of the histone deacetylase HDAC2. SIN3B complex is recruited downstream of the constitutively active genes transcriptional start sites through interaction with histones and mitigates histone acetylation and RNA polymerase II progression within transcribed regions contributing to the regulation of transcription.", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7#function" }, { "database": "UniProtKB", "id": "ARBA00054574", "url": "https://www.uniprot.org/uniprotkb/ARBA00054574#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SIN3B", "url": "https://www.uniprot.org/uniprotkb/F1S9U7", "locus": { "chromosome": "2", "start_pos": 60750231, "end_pos": 60791612, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013867", "url": "https://www.ensembl.org/id/ENSSSCG00000013867" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013867", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013867", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513073", "url": "https://www.ncbi.nlm.nih.gov/gene/100513073", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003822", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003822", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031693", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031693", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039774", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039774", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513073", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513073", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KEIWPFI", "url": "https://omabrowser.org/oma/group/KEIWPFI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9U7", "url": "https://www.orthodb.org/?gene=F1S9U7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12346", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12346", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12346:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12346:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02671", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02671", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08295", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08295", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16879", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16879", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-400206", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-400206", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8936459", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8936459", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003123526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123526", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9U7-1", "url": "https://www.uniprot.org/uniprotkb/F1S9U7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHAGGGGGGGPAGRGLSGARWGRSGSAGHEKLPVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNIQSPLSSQENSHNHSDCAENFKQQMPYKEDKPQVPLESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLSTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKRSLFTGNGPCEMSSVQKSEHEKNLEHSKKRSRPSLLRPVSAPAKKKMKLRGTKDLSIATVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDCLGGTSEVIQRRAIHRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISYYVKRQPAIQKEDQGTIHQLVHQFVPSLFFSQQLDLGASEDSADEGRGSPQGQSTDPGDRKKPAPGPQSSPPEEKGAAGEASAAEQQPPQHKPLDDVYSLFFANNNWYFFLRLHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGNDPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQSIARQLHHLVSDDVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRKGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKPVFLQRNLKKFRRWQCEQVRALRGEAKSSWKRLVGVESACNVDCRFKLSTHKMMFIVNSEDYMYRRGTLCRAKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPCKTLCETAHVHGLPVTRYRVQYSRRPASP", "length": 1121, "header": "tr|F1S9U7-1|F1S9U7_PIG Isoform 1 of Paired amphipathic helix protein Sin3b OS=Sus scrofa OX=9823 GN=SIN3B PE=4 SV=3 CANONICAL=F1S9U7-1" }, "isoforms": [ { "isoform_ac": "F1S9U7-1", "url": "https://www.uniprot.org/uniprotkb/F1S9U7/entry#F1S9U7-1", "sequence": { "sequence": "MAHAGGGGGGGPAGRGLSGARWGRSGSAGHEKLPVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNIQSPLSSQENSHNHSDCAENFKQQMPYKEDKPQVPLESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLSTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKRSLFTGNGPCEMSSVQKSEHEKNLEHSKKRSRPSLLRPVSAPAKKKMKLRGTKDLSIATVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDCLGGTSEVIQRRAIHRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISYYVKRQPAIQKEDQGTIHQLVHQFVPSLFFSQQLDLGASEDSADEGRGSPQGQSTDPGDRKKPAPGPQSSPPEEKGAAGEASAAEQQPPQHKPLDDVYSLFFANNNWYFFLRLHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGNDPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQSIARQLHHLVSDDVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRKGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKPVFLQRNLKKFRRWQCEQVRALRGEAKSSWKRLVGVESACNVDCRFKLSTHKMMFIVNSEDYMYRRGTLCRAKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPCKTLCETAHVHGLPVTRYRVQYSRRPASP", "length": 1121, "header": "tr|F1S9U7-1|F1S9U7_PIG Isoform 1 of Paired amphipathic helix protein Sin3b OS=Sus scrofa OX=9823 GN=SIN3B PE=4 SV=3 CANONICAL=F1S9U7-1" }, "locus": { "chromosome": "2", "start_pos": 60791605, "end_pos": 60751879, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015147.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015147.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014741.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014741.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513073", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513073", "resource": "KEGG Pathway" }, { "id": "R-SSC-400206", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-400206", "resource": "Reactome", "description": "Regulation of lipid metabolism by PPARalpha" }, { "id": "R-SSC-8936459", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8936459", "resource": "Reactome", "description": "RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AD74-1", "protein_name": "SIN3 transcription regulator family member B", "gene_name": "Nwd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTEREALQCTAYPEVQSFCQKHGLAFEAVDLRWGIPNTQATDYLTTELCLEELERCQKTSVGPAFVALLGDQYGPCPVPQRIEEKEWEALRAQLTSRPRDLELVTRHFQRDDNTIPPTYVLQPPGSGVVPGPEEATLTSVLRGGAQEAWRLGLISQEQWMCYHRSVIEWEIEHGLLNSARGDQGATVFLRDVQDLSKHILDDCCLKMVDRLADGCLDTNAQSLLSGLKGRILDAQPGALKSHHLPWSRDLVNPKNKTHARYLKQLSEQFVARTNHQVLEQLRELELARQELGWLYQEIRHHLWQSTESTKVFCGHQELLAQLKQRLRQDESRTHTPLVLFGPPGIGKTSLMCKLAQQVPELLGHKTVAVLRLLGTSKLSLDARSLLRSLSFQLCLAYGLPLPPAQVLEAHSRVGHFFHILLHTVSQRNFESLVLLLDSVDDLDSIRHTPRVSWLPLKCPPRVHLILSACSGQQVLCNLQQTLKDPSAYWEVKALSGSQGQEFIQLLLAAERRMLSPGQRDVLWASLPECGHPGRLRLAFEEARKWASFTVPVPLATTAEEATHQFCIRLEETHGQLLVARVLGYIVSSRYGLSEAELKDVLSLDDEVLQAVYRDWTPPSKELLRFPPLLWVRLRRDLGHCLVRRPVDGCILLAIAHRQLSQVIQVRYLSGPERAKRHGVLAEFFSGAWSQGIKKLITLPLVGKPLNLDRKVAPQPLWFSGTVANWRKLTELPFHLLHAGCLEELKQEVLGNMSWISCRGISGGIEDLLDDFDMCAPHMDSPEVYLVREAIQLCRPAVELRGLEKSILYTELLARLLFFATSHPAMIGQLCQQAQSWFRACPYPMLVPLAGFLQPPGGPLRATLTGCHKGITAIAWSLEEKLLVVGTQDGTMVVWDVEEQQVVHVLMGHTAEVRCVRVFAQGTLAISASKDHTLRLWSLLSGQEKATILDGGSPNPTEQQGWDLHVDEIKNVVYSTSGTKINVWDLETSKLVFCITGDASDPWVCVALLAAQGLLLALTEGGQVSLWSSAVGKLQEKHQLCSIKEETPTCAVSIQTRARLVVGFSSGSVALVCAGEDRLLEKLPEAVGFLAVSEDDSLLAVGFGRCVRVFLADSQDFHRFMATDLEHEDVVETAVLGPENNLIITASRDALIQVWSLSEQGTLLSVFESAGAPASLLVLCETLVVSASWKSSSFKAWDLRSTQKPPSPTPFLDRTGLATVSHHGSYVYFPKVGDKNKVTIWDLAEGEEQDSLDTSNEVCCLEVAEQTKLLFTGLVSGIVLVFPLNSRQDVLCIPPPEARKAVNCMSVSKSEDRLAIAYDNIVLVLDISPGDLCPAIEGPTYTFYTQLPETIVRVAVLADYRVVYGMSDGSLFLYDCAQSKVFPLEAHGSRVSCVEVSHREQLAVSGAEDALLCLWDLQACREKFKMSYESSYCRGVRCACFSKDDKHVFTGMEDRSIIAWSALDGTLLAVQFVHAVVNRIIPTSNGFMAPTSHGYLIRERFQCPSARASQQDPLKNFKKAVWLIKTRQREDLAEAEAPQDAEPVAVEGKESKSNKHSQVCLIL", "length": 1563 }, "evidence": [ { "id": "F1S9U7", "url": "https://omabrowser.org/oma/group/F1S9U7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BGW5-1", "protein_name": "Paired amphipathic helix protein Sin3b", "gene_name": "SIN3B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAHAGGGGGVGPAGRGLSGARWGRSGSGGHEKLPVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNIQSPLSSQENSHSHSDCAESVKQQTLYKEDKPQVPLESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLSTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKRSLFTGNGPCEMNSVQKSEHEKNLEHSKKRSRPSLLRPVSAPAKKKMKLRGTKDLSIATVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVGPFLGKFPELFAQFKSFLGVKELSFAPPMNDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDCLGGTSEVIQRRAIHRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISYYVKRQPAIQKEDQGTIHQLVHQFVPSLFFSQQLDLGASEDSADEGRASPQGQAADPGVDRKKPAPGPQSSPPEEKGAAGEAPAPEPQPPQHKPLDDVYSLFFANNNWYFFLRLHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGNDPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQSIARQLHHLVSDDVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRKGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGAEGASSSPTEGFLLKPVFLQRNLKKFRRWQCEQVRALRGEAKSSWRRLVGVESACNVDCRFKLSTHKMLFIVNSEDYMYRRGTLCRAKQVQPLVLLRHHQHFAEWHSRWLEDNVTVEAASLVQDWLMGEDDEDMVPCKTLCETVRVHGLPVNRYRVQYSRRPASP", "length": 1122 }, "evidence": [ { "id": "F1S9U7", "url": "https://omabrowser.org/oma/group/F1S9U7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O75182-1", "protein_name": "Paired amphipathic helix protein Sin3b", "gene_name": "SIN3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAHAGGGSGGSGAGGPAGRGLSGARWGRSGSAGHEKLPVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNIQSPLTSQENSHNHGDGAEDFKQQVPYKEDKPQVPLESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLNTRGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKRSLFTGNGPCEMHSVQKNEHDKTPEHSRKRSRPSLLRPVSAPAKKKMKLRGTKDLSIAAVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKELDHWTLLQGSWTDDYCMSKFKNTCWIPGYSAGVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISYYVKRQPAIQKEDQGTIHQLLHQFVPSLFFSQQLDLGASEESADEDRDSPQGQTTDPSERKKPAPGPHSSPPEEKGAFGDAPATEQPPLPPPAPHKPLDDVYSLFFANNNWYFFLRLHQTLCSRLLKIYRQAQKQLLEYRTEKEREKLLCEGRREKGSDPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYVGFTMDKLVQNIARQLHHLVSDDVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRKGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKPVFLQRNLKKFRRRWQSEQARALRGEARSSWKRLVGVESACDVDCRFKLSTHKMVFIVNSEDYMYRRGTLCRAKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPCKTLCETVHVHGLPVTRYRVQYSRRPASP", "length": 1162 }, "evidence": [ { "id": "F1S9U7", "url": "https://omabrowser.org/oma/group/F1S9U7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q62141-4", "protein_name": "Paired amphipathic helix protein Sin3b", "gene_name": "Sin3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAHAGSGGSAGRGFGGSRWGRSGSGGHEKLPVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNIQSPLSSQDNSHSHGDCGEDFKQMSYKEDRGQVPLESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLPEAKRSLFTGNGSCEMNSGQKNEEKSLEHNKKRSRPSLLRPVSAPAKKKMKLRGTKDLSIAAVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSPFLGKFPELFAQFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAICKEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPEDQEKLRLDDCLGGTSEVIQRRAIHRIYGDKAPEVIESLKRNPATAVPVVLKRLKAKEEEWREAQQGFNKIWREQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQILEDAAALISYYVKRQPAIQKEDQGTIRQLLHRFLPSLFFSQQCPGTSDDSADERDRDRDSAEPERRRPTDEKPPADASPEPPKVLDDVYSLFFANNNWYFFLRLHQTLCARLLKIYRQAQKQLLEHRREQEREQLLCEGRREKAADPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTLREMFTIHAYIGFTMDKLVQNIARQLHHLVSDDVCLKVVELYLNEQQRGAAGGNLSSRCVRAARETSYQWKAERCMADENCFKVMFLQRRGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGSEGASSSSTEGFLLKPVFLQRNLKKFRRWQCEQVRAMRGEAKSSWKRLMGVESACDVDCRFRLGTHKMVFIVNSEDYMYRRGTLCRAKQVQPLVLLRHHRHFEEWHGRWLEDNVTVAAAGLVQDWLMGEEEEDMVPCKTLCETAHVHGLPVTRYRVQYSRRPASP", "length": 1098 }, "evidence": [ { "id": "F1S9U7", "url": "https://omabrowser.org/oma/group/F1S9U7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" }, { "name": "Sin3-type complex", "id": "GO:0070822", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070822", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" }, { "name": "XY body", "id": "GO:0001741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001741", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" }, { "name": "X chromosome", "id": "GO:0000805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000805", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" }, { "name": "Y chromosome", "id": "GO:0000806", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000806", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" }, { "name": "autosome", "id": "GO:0030849", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030849", "evidence": [ { "database": "UniProtKB", "id": "F1S9U7", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1069, "end_pos": 1071, "annotation": "n_glycosylation_sequon" }, { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 421, "end_pos": 423, "annotation": "n_glycosylation_sequon" }, { "start_pos": 578, "end_pos": 580, "annotation": "n_glycosylation_sequon" }, { "start_pos": 885, "end_pos": 887, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9U7" }, { "id": "SM00761", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00761" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Histone deacetylase interacting", "eco_id": "ECO_0000259", "start_pos": 389, "end_pos": 489, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1069, "end_pos": 1071 }, { "start_pos": 128, "end_pos": 130 }, { "start_pos": 421, "end_pos": 423 }, { "start_pos": 578, "end_pos": 580 }, { "start_pos": 885, "end_pos": 887 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9V4-1", "uniprot_ac": "F1S9V4", "uniprot_id": "F1S9V4_PIG", "mass": { "chemical_mass": 154811.0, "monoisotopic_mass": 154811.0 }, "refseq": { "ac": "XP_003128797", "name": "putative ATP-dependent RNA helicase TDRD9 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128797" }, "gene_names": [ { "name": "TDRD9", "type": "recommended", "evidence": [ { "id": "F1S9V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ] }, { "name": "TDRD9", "type": "synonym", "evidence": [ { "id": "XP_003128797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128797" } ] } ], "protein_names": [ { "name": "ATP-dependent RNA helicase TDRD9", "type": "recommended", "evidence": [ { "id": "F1S9V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9V4/entry#names_and_taxonomy" } ] }, { "name": "3.6.4.13", "type": "synonym", "evidence": [ { "id": "F1S9V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9V4/entry#names_and_taxonomy" } ] }, { "name": "Tudor domain-containing protein 9", "type": "synonym", "evidence": [ { "id": "F1S9V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9V4/entry#names_and_taxonomy" } ] }, { "name": "putative ATP-dependent RNA helicase TDRD9 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003128797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128797" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TDRD9", "url": "https://www.uniprot.org/uniprotkb/F1S9V4", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000002552", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002552", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18791", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18791", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20431", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20431", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522382", "url": "https://www.ncbi.nlm.nih.gov/gene/100522382", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035437", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035437", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522382", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522382", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR18934", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18934", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18934:SF113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18934:SF113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00567", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00567", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003128797", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128797", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9V4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9V4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRKLTVDQINDWFTIGKTVTNVELLGAPPALPGEAARDEAQRRDTAPGAGPEAEAQAQAEAVARAQAPAQARTAASGRPLSQKSSETEYIDKYRQLEAQEFDLYDSHHSPTGPGPRLPLAKLSNVICLPETTYKYPDLPINRCKEEVISLIESNSVVIIHGATGSGKSTQLPQYILDRSVQRSTYCNIVVTQPRKIGASSIARWISKERAWTLGGLVGYQVGLEKIATEDTKLIYMTTGVLLQKIVSAKSLMEFTHIFIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVVLMSATISCKEFADYFAVPVQNELNPACVYEVEGEPYAVEECYLDDLEHLHRGRLSPHLLEEPAIPTEIYEVAVSLIQLFDDLDMKESGNKTWSGAPSAWERSSVLVFLPGLGEINCMHELLTNMVHKRLQVYPLHSSVTLEEQNNVFLSPVPGYRKVILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCNQRKGRAGRVSKGYCYRLVPKDFWDTSIPDHVIPEMLRCPLGSTILKLKLLDMGEPRALLATALSPPSLGDIERTILLLKEVGALAVRGPRDDENPHDGELTFLGRVLAHLPVNQQLGKLIVLGHVFGCLDECLIIAASLSLKNFFAMPFRQHLDGYRSKMNFSGSSKSDCIALVEAFKAWQTCRQRGELRHPKDELDWGRLNYIQIKRIREVAELYEELKSRVSQFNMHADCRRPVLDREYPHKQRFILQVVLAGAFYPNYFTFGQPDEEVAVRELAGKDPRTTVMLKHVPPYGFLYYKQLQSLFRKCGQVRSIVFDGAKAFVEFSRNPTERFKTLPAVCMAIKLSQLKMSLELSVHPAEEIEGKVRGGAAAKLRTARVSVDFQKQKVDAAQVSSHTSGRSRAVSELLLTVSVTEVVEVGHFWGYRIDEKNAEVLKQLSAEISRLKLVPLPTHPHPDSVCLAPFADAGRESYFRAQILCVCGRCAEVFFVDYGNRALVPLDLLMEMPCQLLELPFQALEFKICRMRPSARSLVCGEPWSGAAGRRFAALVRGCALLAEVFSVVHGVLHVDAYRPAGAQGSIDVRAALVREGYAELAEEPYESKQSHDMLQGLLSEAVEGAADAPASSLVREDETYLIRGLLESFASSKLGNPHCKAILHGPFNPYALKCHSLTRISTFRCVWIEKESVNSVIVSDAPEDGHQRMLVAASLSVNATGSTVLLRETSLLPHIPGLPALLSMLFAPVMELRVDRDGKCYTGVLCGLGWNPSTGAPVLPEHDLELAFDVHFSVEDIVEVNILRAAINKLVCGGPDGSKHLGPERVAQLQDNARQKLLGLFCQLKPRERIVPKWHDRPYEWNQVDPKLVMEQADRQSHRGKSTSLYQLHKLVVLSA", "length": 1389, "header": "tr|F1S9V4-1|F1S9V4_PIG Isoform 1 of ATP-dependent RNA helicase TDRD9 OS=Sus scrofa OX=9823 GN=TDRD9 PE=3 SV=4 CANONICAL=F1S9V4-1" }, "isoforms": [ { "isoform_ac": "F1S9V4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9V4/entry#F1S9V4-1", "sequence": { "sequence": "MLRKLTVDQINDWFTIGKTVTNVELLGAPPALPGEAARDEAQRRDTAPGAGPEAEAQAQAEAVARAQAPAQARTAASGRPLSQKSSETEYIDKYRQLEAQEFDLYDSHHSPTGPGPRLPLAKLSNVICLPETTYKYPDLPINRCKEEVISLIESNSVVIIHGATGSGKSTQLPQYILDRSVQRSTYCNIVVTQPRKIGASSIARWISKERAWTLGGLVGYQVGLEKIATEDTKLIYMTTGVLLQKIVSAKSLMEFTHIFIDEVHERTEEMDFLLLVVRKLLRTNSRFVKVVLMSATISCKEFADYFAVPVQNELNPACVYEVEGEPYAVEECYLDDLEHLHRGRLSPHLLEEPAIPTEIYEVAVSLIQLFDDLDMKESGNKTWSGAPSAWERSSVLVFLPGLGEINCMHELLTNMVHKRLQVYPLHSSVTLEEQNNVFLSPVPGYRKVILSTNIAESSVTVPDVKYVIDFCLTRTLVCDEDTNYQSLRLSWASKTSCNQRKGRAGRVSKGYCYRLVPKDFWDTSIPDHVIPEMLRCPLGSTILKLKLLDMGEPRALLATALSPPSLGDIERTILLLKEVGALAVRGPRDDENPHDGELTFLGRVLAHLPVNQQLGKLIVLGHVFGCLDECLIIAASLSLKNFFAMPFRQHLDGYRSKMNFSGSSKSDCIALVEAFKAWQTCRQRGELRHPKDELDWGRLNYIQIKRIREVAELYEELKSRVSQFNMHADCRRPVLDREYPHKQRFILQVVLAGAFYPNYFTFGQPDEEVAVRELAGKDPRTTVMLKHVPPYGFLYYKQLQSLFRKCGQVRSIVFDGAKAFVEFSRNPTERFKTLPAVCMAIKLSQLKMSLELSVHPAEEIEGKVRGGAAAKLRTARVSVDFQKQKVDAAQVSSHTSGRSRAVSELLLTVSVTEVVEVGHFWGYRIDEKNAEVLKQLSAEISRLKLVPLPTHPHPDSVCLAPFADAGRESYFRAQILCVCGRCAEVFFVDYGNRALVPLDLLMEMPCQLLELPFQALEFKICRMRPSARSLVCGEPWSGAAGRRFAALVRGCALLAEVFSVVHGVLHVDAYRPAGAQGSIDVRAALVREGYAELAEEPYESKQSHDMLQGLLSEAVEGAADAPASSLVREDETYLIRGLLESFASSKLGNPHCKAILHGPFNPYALKCHSLTRISTFRCVWIEKESVNSVIVSDAPEDGHQRMLVAASLSVNATGSTVLLRETSLLPHIPGLPALLSMLFAPVMELRVDRDGKCYTGVLCGLGWNPSTGAPVLPEHDLELAFDVHFSVEDIVEVNILRAAINKLVCGGPDGSKHLGPERVAQLQDNARQKLLGLFCQLKPRERIVPKWHDRPYEWNQVDPKLVMEQADRQSHRGKSTSLYQLHKLVVLSA", "length": 1389, "header": "tr|F1S9V4-1|F1S9V4_PIG Isoform 1 of ATP-dependent RNA helicase TDRD9 OS=Sus scrofa OX=9823 GN=TDRD9 PE=3 SV=4 CANONICAL=F1S9V4-1" }, "locus": { "chromosome": "AEMK02000452.1", "start_pos": 2478524, "end_pos": 2394154, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002836.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002836.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002764.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002764.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522382", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522382", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "helicase activity", "id": "GO:0004386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004386", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "RNA helicase activity", "id": "GO:0003724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003724", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "piP-body", "id": "GO:0071547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071547", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "fertilization", "id": "GO:0009566", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009566", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "piRNA processing", "id": "GO:0034587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034587", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "male meiosis I", "id": "GO:0007141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007141", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "transposable element silencing by piRNA-mediated heterochromatin formation", "id": "GO:0141006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141006", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" }, { "name": "transposable element silencing by piRNA-mediated DNA methylation", "id": "GO:0141196", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141196", "evidence": [ { "database": "UniProtKB", "id": "F1S9V4", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1211, "end_pos": 1213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 659, "end_pos": 661, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 149, "end_pos": 315, "start_aa": "Ile", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S9V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 365, "end_pos": 551, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1S9V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9V4" }, { "id": "PS50304", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50304" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tudor", "eco_id": "ECO_0000259", "start_pos": 951, "end_pos": 1011, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1211, "end_pos": 1213 }, { "start_pos": 380, "end_pos": 382 }, { "start_pos": 659, "end_pos": 661 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9Y1-1", "uniprot_ac": "F1S9Y1", "uniprot_id": "F1S9Y1_PIG", "mass": { "chemical_mass": 35033.0, "monoisotopic_mass": 35033.0 }, "refseq": { "ac": "XP_003123515", "name": "olfactory receptor 2Z1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123515" }, "gene_names": [ { "name": "LOC100511184", "type": "recommended", "evidence": [ { "id": "F1S9Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1" } ] }, { "name": "LOC100511184", "type": "synonym", "evidence": [ { "id": "XP_003123515", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123515" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1S9Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 2Z1-like", "type": "synonym", "evidence": [ { "id": "XP_003123515", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123515" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9Y1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100511184", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1", "locus": {} } ], "crossref": [ { "id": "F1S9Y1", "url": "https://alphafold.ebi.ac.uk/entry/F1S9Y1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013851", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013851", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15421", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15421", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511184", "url": "https://www.ncbi.nlm.nih.gov/gene/100511184", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511184", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511184", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MRESNQS", "url": "https://omabrowser.org/oma/group/MRESNQS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9Y1", "url": "https://www.orthodb.org/?gene=F1S9Y1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123515", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123515", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S9Y1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9Y1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRELNQSMTSYFTLMSLFSHSGPHLVLFSLVATIFTMGLLGNAILLFLIHTDSRLHTPMYFLLSQLSLLDVGFPLVTIPKMAADFLQGEDFISFEGCAAQMFFLMLMGVSEGVLLSLMSYDRYVAVCHPLHYPMLMRRQVCLLMVGTSWLSGVLVASIQTSITLHFPYCASRTVDHFFCELPALLKLSCTDTSAYELALSISGVLILLLPLSLIATSYSHVLGAILRMHITEAQHKAFTTCSSHITVVGLFYGAAVFMYMVPSTYHSPQQDNVVSLFYSLITPMLNPLIYSLRNREVRVALVKILGRAGFRSKR", "length": 314, "header": "tr|F1S9Y1-1|F1S9Y1_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100511184 PE=3 SV=1 CANONICAL=F1S9Y1-1" }, "isoforms": [ { "isoform_ac": "F1S9Y1-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1/entry#F1S9Y1-1", "sequence": { "sequence": "MRELNQSMTSYFTLMSLFSHSGPHLVLFSLVATIFTMGLLGNAILLFLIHTDSRLHTPMYFLLSQLSLLDVGFPLVTIPKMAADFLQGEDFISFEGCAAQMFFLMLMGVSEGVLLSLMSYDRYVAVCHPLHYPMLMRRQVCLLMVGTSWLSGVLVASIQTSITLHFPYCASRTVDHFFCELPALLKLSCTDTSAYELALSISGVLILLLPLSLIATSYSHVLGAILRMHITEAQHKAFTTCSSHITVVGLFYGAAVFMYMVPSTYHSPQQDNVVSLFYSLITPMLNPLIYSLRNREVRVALVKILGRAGFRSKR", "length": 314, "header": "tr|F1S9Y1-1|F1S9Y1_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100511184 PE=3 SV=1 CANONICAL=F1S9Y1-1" }, "locus": { "chromosome": "2", "start_pos": 61521793, "end_pos": 61520852, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015130.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015130.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014725.1", "url": "https://www.ensembl.org/id/ENSSSCP00000014725.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511184", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511184", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MEY6-1", "protein_name": "Olfactory receptor", "gene_name": "OR2Z11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "METNQSVTSDFTLMGLFNHSGPHLALFSLVAATFTMGLLGNAILIFLIHTDARLHTPMYFLLSQLSLLDVGFLLVTIPKMAADFLEEEGTISFGGCAAQMFFLMLIGVSEGVLLSLMSYDRYIAVCHPLHYPVLMRRQVCLLMVGTSWLSGVLVASIQTSITLHFPYCASRTVDHFFCELPALLKLSCADTSAYELALSISGVLILVLPLSLIATSYSHVLGAVLHMHSAEARHKAFTTCSSHITVVGLFYGAAVFMYMVPGTYHTPQQDNVVSLFYSLITPMLNPLIYSLRNREVQMALVRILFRTGFRSKR", "length": 313 }, "evidence": [ { "id": "F1S9Y1", "url": "https://omabrowser.org/oma/group/F1S9Y1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3H4I3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100761437", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEASNVSTTSDFTLVGLFSHTGLHLALFFLVATMFATGLLGNTILIFLIATDSRLHTPMYFLLSQLSLLDVGFPLVTIPKMVTDFLQGENAITFGGCVTQMFLLMLMGVSEGVLLSLMSYDRYVAVCHPLHYQVLMRGQVCLVMVGASWFSGALVASIQTSIALQFPYCASHTVDHFFCELPALLKLSCADTSDYELALSISGVLILLLPLSLIFTSYSHVLGAVLRMRSAEARRKAFTTCSSHVAVVGLFYGAAVFMYMVPGSYHSPQQDNVVSLFYSLITPTLNPLIYSLRNREVRMALVKATGRADFRAKR", "length": 314 }, "evidence": [ { "id": "F1S9Y1", "url": "https://omabrowser.org/oma/group/F1S9Y1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7TRY2-1", "protein_name": "Olfactory receptor", "gene_name": "Or2z8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGTSNVSSNSDFILMGLFSYTGPHLVLFFLMATVFIIGLLGNTTLLFLIATDSRLHTPMYFLLSQLSLLDVGFPLVTIPKVVAEFLQGQNVISFGGCATQMFFLMLMGVSEGVLLSLMSYDRYVAVCHPLHYQVLMRNQVCLVMVGASWFSGALVASIQTSITLQFPYCASHTVDHFFCELPALLKLSCADTSAYELALSISGVLILLLPLSLIFISYGHVLGAVLHMRSAEARHKAFTTCSSHVTVVGLFYGAAVFMYMVPGSYHSPKQDNVVSLFYSLITPTLNPLIYSLRNREVRMSLVKVMGRSDFRVKR", "length": 314 }, "evidence": [ { "id": "F1S9Y1", "url": "https://omabrowser.org/oma/group/F1S9Y1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9Y1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 314, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9Y1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9Y1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9Y1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Y1" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9Y2-1", "uniprot_ac": "F1S9Y2", "uniprot_id": "F1S9Y2_PIG", "mass": { "chemical_mass": 34696.0, "monoisotopic_mass": 34696.0 }, "refseq": { "ac": "XP_003123527", "name": "olfactory receptor 1361-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123527" }, "gene_names": [ { "name": "LOC100513271", "type": "recommended", "evidence": [ { "id": "F1S9Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2" } ] }, { "name": "LOC100513271", "type": "synonym", "evidence": [ { "id": "XP_003123527", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123527" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1S9Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 1361-like", "type": "synonym", "evidence": [ { "id": "XP_003123527", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123527" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y2", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9Y2", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100513271", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2", "locus": {} } ], "crossref": [ { "id": "F1S9Y2", "url": "https://alphafold.ebi.ac.uk/entry/F1S9Y2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15918", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15918", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513271", "url": "https://www.ncbi.nlm.nih.gov/gene/100513271", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513271", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513271", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NVMVYTV", "url": "https://omabrowser.org/oma/group/NVMVYTV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9Y2", "url": "https://www.orthodb.org/?gene=F1S9Y2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123527", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123527", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S9Y2", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9Y2-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALEGANLTLFSEFLLLGLSEDPKQQQLLFILFLSMYLVMGLGNLLIILAIVTDARLHTPMYFFLASLAFVDICFTSTTIPKMLANHVSGHKGIPYASCLTQMFFFIWFAGIDSFLLTAMAYDRYMAICHPLHYATSVTPQLCGLLVAASWAAAFGNALTHTVLLTRLSFCTHNRIPHFFCDLSPLLKLACSDTFLNNAMVYTVGALPIITPFVGILLSYTHIFAAVLRIPSTRGKQKAFSTCGSHLSVVSLFYGTLIGVYFSPTSSHTAQKDTAAAVMYTVVTPMLNPFIYSLRNSDMKGALRALISRRPILTL", "length": 315, "header": "tr|F1S9Y2-1|F1S9Y2_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100513271 PE=3 SV=2 CANONICAL=F1S9Y2-1" }, "isoforms": [ { "isoform_ac": "F1S9Y2-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2/entry#F1S9Y2-1", "sequence": { "sequence": "MALEGANLTLFSEFLLLGLSEDPKQQQLLFILFLSMYLVMGLGNLLIILAIVTDARLHTPMYFFLASLAFVDICFTSTTIPKMLANHVSGHKGIPYASCLTQMFFFIWFAGIDSFLLTAMAYDRYMAICHPLHYATSVTPQLCGLLVAASWAAAFGNALTHTVLLTRLSFCTHNRIPHFFCDLSPLLKLACSDTFLNNAMVYTVGALPIITPFVGILLSYTHIFAAVLRIPSTRGKQKAFSTCGSHLSVVSLFYGTLIGVYFSPTSSHTAQKDTAAAVMYTVVTPMLNPFIYSLRNSDMKGALRALISRRPILTL", "length": 315, "header": "tr|F1S9Y2-1|F1S9Y2_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100513271 PE=3 SV=2 CANONICAL=F1S9Y2-1" }, "locus": { "chromosome": "2", "start_pos": 61490685, "end_pos": 61489741, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015129.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015129.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014724.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014724.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y2", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513271", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513271", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MDI3-1", "protein_name": "Olfactory receptor", "gene_name": "OR1AB2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEIGANLTLVSEFLLLGLSEDPKQQRLLFILFLSMYLVTQLGNLSIILAIATDVRLHTPMYFFLANLAFVDICFTSTTIPKMLANHVSGHKGIPYAGCLAQMFFFIWFAGIDSFLLTTMAYDRYKAICHPLHYALSVTPQLCSVLVAASWTAAFGNALTHTVLLTRLSFCTHNQIPHFFCDLSPLLKLACSDTFLNNAVVYTVGALPIITPFVGILVSYTRIFAAVLRIPSTRGKRKAFSTCGSHLSVVSLFYGTIIGVYFSPMSSHAAQKDTAAAVMYTVVTPMLNPFIYSLRNSDMKGALGALISRRPVFIQ", "length": 315 }, "evidence": [ { "id": "F1S9Y2", "url": "https://omabrowser.org/oma/group/F1S9Y2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7TRY0-1", "protein_name": "Olfactory receptor", "gene_name": "Or1ab2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGANLSGVSEFLLLGLSQDPRQQQLLFSAFLSMYLLTGLGNLLIILAIAADPRLHTPMYFFLANLAFVDVCFTSTTIPKMLANHVSGHKGISYSGCLTQMFFFIWFAGIDSFLLTAMAYDRFVAICHPLHYTTSITPRLCGFLVTASWASAFANALTHTVLLTRLLFCGHNQVPHFFCDLSPLLKLACSDTSLNDIMVYTVGALPIITPFVGILTSYTRIFTAVLRIPSTGGKWKAFSTCGSHLSVVSLFYGTLIGVYFSPTSSHTAQKDTAAAVMYTVVTPMMNPFIYTLRNKDMKGALMTFVRRTAVLVR", "length": 313 }, "evidence": [ { "id": "F1S9Y2", "url": "https://omabrowser.org/oma/group/F1S9Y2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y2", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y2", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y2", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y2", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9Y2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 315, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9Y2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9Y2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Y2" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 292, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9Y4-1", "uniprot_ac": "F1S9Y4", "uniprot_id": "F1S9Y4_PIG", "mass": { "chemical_mass": 35487.0, "monoisotopic_mass": 35487.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100525859", "type": "recommended", "evidence": [ { "id": "F1S9Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1S9Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y4", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y4", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9Y4", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100525859", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4", "locus": {} } ], "crossref": [ { "id": "F1S9Y4", "url": "https://alphafold.ebi.ac.uk/entry/F1S9Y4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15225", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15225", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S9Y4", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9Y4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAQNYSTVSEFILIGFSNFPQQLLPTFFLLYLLMYLFTLLGNLLIMTTIWREHSLHTPMYLFLCALSTSEILFTVAVTPRMLVDMLSTHHSISFVACASQMFFSFTFGFTHSFLLMIMGYDRYVAICHPLRYNVLMSTRDCARLVSWSWAGGSVMGMMVTMIVFHLTFCGSNEIHHFACHVLALLKLACGKETSSVTLGVILVCVTALMGCLFLIVLSYVFIVAAILRIPSAEGRHKTFSTCVSHLTIVIVHYGFASIIYLKPKGPRSMDSNTLMATTYTVFTPFLSPIIFSLRNKELKNAIKKSFHRKFSPSS", "length": 315, "header": "tr|F1S9Y4-1|F1S9Y4_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100525859 PE=3 SV=5 CANONICAL=F1S9Y4-1" }, "isoforms": [ { "isoform_ac": "F1S9Y4-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4/entry#F1S9Y4-1", "sequence": { "sequence": "MSAQNYSTVSEFILIGFSNFPQQLLPTFFLLYLLMYLFTLLGNLLIMTTIWREHSLHTPMYLFLCALSTSEILFTVAVTPRMLVDMLSTHHSISFVACASQMFFSFTFGFTHSFLLMIMGYDRYVAICHPLRYNVLMSTRDCARLVSWSWAGGSVMGMMVTMIVFHLTFCGSNEIHHFACHVLALLKLACGKETSSVTLGVILVCVTALMGCLFLIVLSYVFIVAAILRIPSAEGRHKTFSTCVSHLTIVIVHYGFASIIYLKPKGPRSMDSNTLMATTYTVFTPFLSPIIFSLRNKELKNAIKKSFHRKFSPSS", "length": 315, "header": "tr|F1S9Y4-1|F1S9Y4_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100525859 PE=3 SV=5 CANONICAL=F1S9Y4-1" }, "locus": { "chromosome": "2", "start_pos": 61601765, "end_pos": 61600821, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015125.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015125.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014720.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014720.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 79, "start_aa": "Thr", "end_pos": 79, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr79", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y4", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y4", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y4", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y4", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1S9Y4", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9Y4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 315, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9Y4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9Y4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Y4" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 292, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 79 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1S9Z8-1", "uniprot_ac": "F1S9Z8", "uniprot_id": "F1S9Z8_PIG", "mass": { "chemical_mass": 34875.0, "monoisotopic_mass": 34875.0 }, "refseq": {}, "gene_names": [ { "name": "LOC102165457", "type": "recommended", "evidence": [ { "id": "F1S9Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1S9Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Z8", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1S9Z8", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC102165457", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8", "locus": {} } ], "crossref": [ { "id": "F1S9Z8", "url": "https://alphafold.ebi.ac.uk/entry/F1S9Z8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013843", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013843", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15918", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15918", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FFCDINT", "url": "https://omabrowser.org/oma/group/FFCDINT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1S9Z8", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9Z8-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDMDNQTQVSEFILLGLSEQPLQRQMFFTLSFSLYLIGCMGNLLTILAIVSDPHLHSPMYFFLSNLSLLDICFTSTTIPKVLVNHLCGLSTISFSACLAQMYFFVAFGAADSFLLSAMAYDRYLAICCPLHYMTIMSILRCALLVVIPWISANLISMVHTILMTRLSFCSNRIPHFFCDINALINLSCSDTQVNKILVLVLGGSGVLIPFVCIMASYTPIAVAVWKVPSARGRWKAFSTCGSHLCVVSLFYGTIIGVYFNPASTHTPQRDMAATVIYTMVTSVLNPFIYSLRNQDLKGALRKFIRWGHFAKSL", "length": 313, "header": "tr|F1S9Z8-1|F1S9Z8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC102165457 PE=3 SV=4 CANONICAL=F1S9Z8-1" }, "isoforms": [ { "isoform_ac": "F1S9Z8-1", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8/entry#F1S9Z8-1", "sequence": { "sequence": "MDMDNQTQVSEFILLGLSEQPLQRQMFFTLSFSLYLIGCMGNLLTILAIVSDPHLHSPMYFFLSNLSLLDICFTSTTIPKVLVNHLCGLSTISFSACLAQMYFFVAFGAADSFLLSAMAYDRYLAICCPLHYMTIMSILRCALLVVIPWISANLISMVHTILMTRLSFCSNRIPHFFCDINALINLSCSDTQVNKILVLVLGGSGVLIPFVCIMASYTPIAVAVWKVPSARGRWKAFSTCGSHLCVVSLFYGTIIGVYFNPASTHTPQRDMAATVIYTMVTSVLNPFIYSLRNQDLKGALRKFIRWGHFAKSL", "length": 313, "header": "tr|F1S9Z8-1|F1S9Z8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC102165457 PE=3 SV=4 CANONICAL=F1S9Z8-1" }, "locus": { "chromosome": "2", "start_pos": 61714286, "end_pos": 61713348, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015121.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015121.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014716.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014716.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S9Z8", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1S9Z8", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1S9Z8", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1S9Z8", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1S9Z8", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1S9Z8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1S9Z8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1S9Z8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1S9Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1S9Z8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 185, "end_pos": 187 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SA00-1", "uniprot_ac": "F1SA00", "uniprot_id": "F1SA00_PIG", "mass": { "chemical_mass": 34712.0, "monoisotopic_mass": 34712.0 }, "refseq": { "ac": "XP_003123508", "name": "olfactory receptor 10H1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123508" }, "gene_names": [ { "name": "LOC100524975", "type": "recommended", "evidence": [ { "id": "F1SA00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA00" } ] }, { "name": "LOC100524975", "type": "synonym", "evidence": [ { "id": "XP_003123508", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123508" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SA00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA00/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 10H1", "type": "synonym", "evidence": [ { "id": "XP_003123508", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123508" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SA00", "url": "https://www.uniprot.org/uniprotkb/F1SA00#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SA00", "url": "https://www.uniprot.org/uniprotkb/F1SA00#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SA00", "url": "https://www.uniprot.org/uniprotkb/F1SA00" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100524975", "url": "https://www.uniprot.org/uniprotkb/F1SA00", "locus": {} } ], "crossref": [ { "id": "F1SA00", "url": "https://alphafold.ebi.ac.uk/entry/F1SA00", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15225", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15225", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524975", "url": "https://www.ncbi.nlm.nih.gov/gene/100524975", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524975", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524975", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MPGENCT", "url": "https://omabrowser.org/oma/group/MPGENCT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SA00", "url": "https://www.orthodb.org/?gene=F1SA00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123508", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123508", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SA00", "url": "https://www.uniprot.org/uniprotkb/F1SA00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SA00-1", "url": "https://www.uniprot.org/uniprotkb/F1SA00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGANLSAVTEFILIGFSTFPHLQLTFFLLFLLMYLFTLLGNLLIMATIWRERSLHTPMYLFLCALSISEILYTFAIIPRMLADLLSTHHSIAFSACASQMFFSFTFGFTHSFLLTVMGYDRYVAICHPLRYNVLMSPGGCACLVVWSWAGGLVMGLVVTSAIFHLTFCGPNEIHHFACHVPPLLKLACGTDVHVVAKGVGLVCLSALLGCCLLILLSYAFIVAAILRIPSAEGRHKAFSTCVSHLTVVVVHYGFASVIYLKPKGPPSLEGDTLMGITYTVLTPFLSPIIFSLRNKELKNTMNKTFSKLYPETM", "length": 314, "header": "tr|F1SA00-1|F1SA00_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100524975 PE=3 SV=1 CANONICAL=F1SA00-1" }, "isoforms": [ { "isoform_ac": "F1SA00-1", "url": "https://www.uniprot.org/uniprotkb/F1SA00/entry#F1SA00-1", "sequence": { "sequence": "MQGANLSAVTEFILIGFSTFPHLQLTFFLLFLLMYLFTLLGNLLIMATIWRERSLHTPMYLFLCALSISEILYTFAIIPRMLADLLSTHHSIAFSACASQMFFSFTFGFTHSFLLTVMGYDRYVAICHPLRYNVLMSPGGCACLVVWSWAGGLVMGLVVTSAIFHLTFCGPNEIHHFACHVPPLLKLACGTDVHVVAKGVGLVCLSALLGCCLLILLSYAFIVAAILRIPSAEGRHKAFSTCVSHLTVVVVHYGFASVIYLKPKGPPSLEGDTLMGITYTVLTPFLSPIIFSLRNKELKNTMNKTFSKLYPETM", "length": 314, "header": "tr|F1SA00-1|F1SA00_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100524975 PE=3 SV=1 CANONICAL=F1SA00-1" }, "locus": { "chromosome": "2", "start_pos": 61696719, "end_pos": 61695778, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015119.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015119.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014714.1", "url": "https://www.ensembl.org/id/ENSSSCP00000014714.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SA00", "url": "https://www.uniprot.org/uniprotkb/F1SA00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524975", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524975", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HL20-1", "protein_name": "Olfactory receptor 10H1", "gene_name": "LOC100773239", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQGINHSGVSEFILIGFSTFPHLQMVFFLLFLLMYLFTLLGNLFIMATIWSERSLHTPMYLFLCALSISEIFYTFAIIPRMLADLLSTLHSIAFLACASQMFFSFTFGFTHSFLLTVMGYDRYVAICHPLRYNVLMSPRGCTCLVAWSWVGGSFMGTVVTTAIFNLTFCGPNEIHHFACHVPPLLKLACGENVLVVARGVGLVCITALLGCFLLILLSYAFIVAAILKIPSAEGRHKAFSTCASHLTVVIVHYGFASVIYLKPKGPKSLEGDTLMGITYTVLTPFLSPIIFSLRNKELKNAMKKAFLSKLYPEII", "length": 315 }, "evidence": [ { "id": "F1SA00", "url": "https://omabrowser.org/oma/group/F1SA00/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q0MQ71-1", "protein_name": "Olfactory receptor family 10 subfamily H member 1", "gene_name": "OR10H1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQGANFSAVTEFILIGFSTFPHLQLMFFLLFLLMYLFTLLGNLLIMATIWREHSLHTPMYLFLCALSISEILYTFAIIPRMLADLLSTDRSISFTACASQMFFSFMFGFTHSFLLTVMGYDRYVAICHPLRYNVLMSPRGCACLVAWSWAGGSVMGLVVTSAIFHLIFCGPNEVHHFACHVPPLLKLACGTEVQVVAKGVGLVCITALLGCGLLILLSYAFIVAAILRIPSAEGRHKAFSTCASHLTVVVVHYGFASVIYLKPKGPQSLEGDTLMGITYTVLTPFLSPIIFSLRNKELKIAMKKTFLSKLYPEKI", "length": 315 }, "evidence": [ { "id": "F1SA00", "url": "https://omabrowser.org/oma/group/F1SA00/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9Y4A9-1", "protein_name": "Olfactory receptor 10H1", "gene_name": "OR10H1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQRANHSTVTQFILVGFSVFPHLQLMLFLLFLLMYLFTLLGNLLIMATVWSERSLHTPMYLFLCALSVSEILYTVAIIPRMLADLLSTQRSIAFLACASQMFFSFSFGFTHSFLLTVMGYDRYVAICHPLRYNVLMSPRGCACLVGCSWAGGLVMGMVVTSAIFHLAFCGHKEIHHFACHVPPLLKLACGDDVLVVAKGVGLVCITALLGCFLLILLSYAFIVAAILKIPSAEGRNKAFSTCASHLTVVVVHYGFASVIYLKPKSPQSLEGDTLMGITYTVLTPFLSPIIFSLRNKELKVAMKKTFFSKLYPEKNVMM", "length": 318 }, "evidence": [ { "id": "F1SA00", "url": "https://omabrowser.org/oma/group/F1SA00/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SA00", "url": "https://www.uniprot.org/uniprotkb/F1SA00" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SA00", "url": "https://www.uniprot.org/uniprotkb/F1SA00" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SA00", "url": "https://www.uniprot.org/uniprotkb/F1SA00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SA00", "url": "https://www.uniprot.org/uniprotkb/F1SA00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SA00-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 314, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SA00-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SA00" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SA00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA00" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 291, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 303, "end_pos": 305 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SA01-1", "uniprot_ac": "F1SA01", "uniprot_id": "F1SA01_PIG", "mass": { "chemical_mass": 34947.0, "monoisotopic_mass": 34947.0 }, "refseq": { "ac": "XP_003123507", "name": "olfactory receptor 10H1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123507" }, "gene_names": [ { "name": "LOC100524789", "type": "recommended", "evidence": [ { "id": "F1SA01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA01" } ] }, { "name": "LOC100524789", "type": "synonym", "evidence": [ { "id": "XP_003123507", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123507" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SA01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA01/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 10H1-like", "type": "synonym", "evidence": [ { "id": "XP_003123507", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123507" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SA01", "url": "https://www.uniprot.org/uniprotkb/F1SA01#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SA01", "url": "https://www.uniprot.org/uniprotkb/F1SA01#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SA01", "url": "https://www.uniprot.org/uniprotkb/F1SA01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100524789", "url": "https://www.uniprot.org/uniprotkb/F1SA01", "locus": {} } ], "crossref": [ { "id": "F1SA01", "url": "https://alphafold.ebi.ac.uk/entry/F1SA01", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15225", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15225", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524789", "url": "https://www.ncbi.nlm.nih.gov/gene/100524789", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524789", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524789", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RRTITWK", "url": "https://omabrowser.org/oma/group/RRTITWK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SA01", "url": "https://www.orthodb.org/?gene=F1SA01", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123507", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123507", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SA01", "url": "https://www.uniprot.org/uniprotkb/F1SA01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SA01-1", "url": "https://www.uniprot.org/uniprotkb/F1SA01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGANLSAVTEFILIGFSTFPHLQLTFFLLFLLMYLFTLLGNLLIMATIWRERSLHTPMYLFLCALSISEILYTFAIIPRMLADLLSTHHSIAFSACASQMFFSFTFGFTHSFLLTVMGYDRYVAICHPLRYNVLMSPGGCACLVVWSWAGGLVMGLVVTSAIFHLTFCGPNMIHHFFCHMPPLVKLACGDISIVITGVGLVCLSALLGCCLLILLSYAFIVAAILRIPSAEGRHKAFSTCVSHLTVVIVHYGFASIIYFKPKGPQSLEGDTLMGITYTVLTPFLSPIIFSLRNKELKNTMKKTFLNKFFLHSC", "length": 314, "header": "tr|F1SA01-1|F1SA01_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100524789 PE=3 SV=3 CANONICAL=F1SA01-1" }, "isoforms": [ { "isoform_ac": "F1SA01-1", "url": "https://www.uniprot.org/uniprotkb/F1SA01/entry#F1SA01-1", "sequence": { "sequence": "MQGANLSAVTEFILIGFSTFPHLQLTFFLLFLLMYLFTLLGNLLIMATIWRERSLHTPMYLFLCALSISEILYTFAIIPRMLADLLSTHHSIAFSACASQMFFSFTFGFTHSFLLTVMGYDRYVAICHPLRYNVLMSPGGCACLVVWSWAGGLVMGLVVTSAIFHLTFCGPNMIHHFFCHMPPLVKLACGDISIVITGVGLVCLSALLGCCLLILLSYAFIVAAILRIPSAEGRHKAFSTCVSHLTVVIVHYGFASIIYFKPKGPQSLEGDTLMGITYTVLTPFLSPIIFSLRNKELKNTMKKTFLNKFFLHSC", "length": 314, "header": "tr|F1SA01-1|F1SA01_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100524789 PE=3 SV=3 CANONICAL=F1SA01-1" }, "locus": { "chromosome": "2", "start_pos": 61683852, "end_pos": 61682911, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015118.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015118.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014713.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014713.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SA01", "url": "https://www.uniprot.org/uniprotkb/F1SA01" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524789", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524789", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SA01", "url": "https://www.uniprot.org/uniprotkb/F1SA01" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SA01", "url": "https://www.uniprot.org/uniprotkb/F1SA01" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SA01", "url": "https://www.uniprot.org/uniprotkb/F1SA01" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SA01", "url": "https://www.uniprot.org/uniprotkb/F1SA01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SA01-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 314, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SA01-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SA01" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SA01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA01" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SA02-1", "uniprot_ac": "F1SA02", "uniprot_id": "F1SA02_PIG", "mass": { "chemical_mass": 110519.0, "monoisotopic_mass": 110519.0 }, "refseq": { "ac": "XP_020939274", "name": "RAS protein activator like-3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939274" }, "gene_names": [ { "name": "RASAL3", "type": "recommended", "evidence": [ { "id": "F1SA02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ] }, { "name": "RASAL3", "type": "synonym", "evidence": [ { "id": "XP_020939274", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939274" } ] } ], "protein_names": [ { "name": "RAS protein activator like-3", "type": "recommended", "evidence": [ { "id": "F1SA02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA02/entry#names_and_taxonomy" } ] }, { "name": "RAS protein activator like-3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020939274", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939274" } ] } ], "function": [ { "annotation": "Functions as a Ras GTPase-activating protein. Plays an important role in the expansion and functions of natural killer T (NKT) cells in the liver by negatively regulating RAS activity and the down-stream ERK signaling pathway.", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02#function" }, { "database": "UniProtKB", "id": "ARBA00056840", "url": "https://www.uniprot.org/uniprotkb/ARBA00056840#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RASAL3", "url": "https://www.uniprot.org/uniprotkb/F1SA02", "locus": { "chromosome": "2", "start_pos": 62153799, "end_pos": 62142769, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013839", "url": "https://www.ensembl.org/id/ENSSSCG00000013839" } ] } } ], "crossref": [ { "id": "F1SA02", "url": "https://alphafold.ebi.ac.uk/entry/F1SA02", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013839", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013839", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05136", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05136", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13374", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13374", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524424", "url": "https://www.ncbi.nlm.nih.gov/gene/100524424", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TWGSRSQ", "url": "https://omabrowser.org/oma/group/TWGSRSQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10194", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10194", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10194:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10194:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00616", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00616", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5658442", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020939274", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939274", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SA02-1", "url": "https://www.uniprot.org/uniprotkb/F1SA02-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPPSSSGASQTQPAAPTPLTAYRWHSGGGGEKGAGGFRWGRLAGWGRALSHQETTVSSQPAPRSLFRRVLSAPPKESRTSRLRISKSLWGRHKSPPLESDPEPEAPEPEPEPEPPAPQIPEAPTPDVPVWNIGAFTLLDGRLVLLGGEDESPRRARVGSASSEGSIQAALGNLRDPDRISGKTEPEATGPNQVHNIRGLLKRLKEKKKVKSELGANASRDGPPSALGSRESLATLSELDLGAERDVRVWPLHPSLLEEPHCFQVTWAGGSRCFSCRSAAERDRWIEDLRRHFQPSQDNVEREETWLSVWVHEVKGLPRAAAGSPGVRAELWLDGALLARTTPRTGPGPLFWAERFHFEALPPARRLSLRLRGAGPGCAVLGRVALALEELGVPRAPAAGLERWFPLLGAPAGAALRARIRARRLRVLPSERYKELAEFLTFHYARLCGALELALSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELARSGGREALLFRENTLATKAIDEYMKLVAQDYLQETLGQVVQRLCASMEDCEVDPSKCPASELPQHQARLRNSCKEVFENIIHSYDWFPAELGTVFSGWREACKARGSEALGPRLVCASLFLRLLCPAILSPSLFGLAPEHPAPGPARTLTLIAKVIQNLANCAPFGEKEAYMSFMNSFLEDHGPAMQRFLDQVAMVDVDTAPSGYQGSSDLALQLAVLHAQLCTIFAELDQATRDSLEPLPTILHAIEEGRPVPVSVPMRLPPPPVQVHSSFSAGEKPGFLAPRDLPKHTPLISKSQSLRSVHGAGSWARPRPDEEQAPRLPRPVQRTQSVPAGRPARRRPSSGPRPRPKGSLRTGPTPRGRPWIGASASLPRKPSVPWQRQLDQPRDREQAPGTHRPLSKLAELQCEVAALRQDQKALCGLVESLRTHVRALSEQQELLRSQLQNLDSLIGERTAKLDPELDSPLSEGHRLKSLECRLAEIESTQAQLRDTIQSMQLLPRMSGFGSQPPPLKAPCVNGDTT", "length": 1012, "header": "tr|F1SA02-1|F1SA02_PIG Isoform 1 of RAS protein activator like-3 OS=Sus scrofa OX=9823 GN=RASAL3 PE=4 SV=3 CANONICAL=F1SA02-1" }, "isoforms": [ { "isoform_ac": "F1SA02-1", "url": "https://www.uniprot.org/uniprotkb/F1SA02/entry#F1SA02-1", "sequence": { "sequence": "MDPPSSSGASQTQPAAPTPLTAYRWHSGGGGEKGAGGFRWGRLAGWGRALSHQETTVSSQPAPRSLFRRVLSAPPKESRTSRLRISKSLWGRHKSPPLESDPEPEAPEPEPEPEPPAPQIPEAPTPDVPVWNIGAFTLLDGRLVLLGGEDESPRRARVGSASSEGSIQAALGNLRDPDRISGKTEPEATGPNQVHNIRGLLKRLKEKKKVKSELGANASRDGPPSALGSRESLATLSELDLGAERDVRVWPLHPSLLEEPHCFQVTWAGGSRCFSCRSAAERDRWIEDLRRHFQPSQDNVEREETWLSVWVHEVKGLPRAAAGSPGVRAELWLDGALLARTTPRTGPGPLFWAERFHFEALPPARRLSLRLRGAGPGCAVLGRVALALEELGVPRAPAAGLERWFPLLGAPAGAALRARIRARRLRVLPSERYKELAEFLTFHYARLCGALELALSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELARSGGREALLFRENTLATKAIDEYMKLVAQDYLQETLGQVVQRLCASMEDCEVDPSKCPASELPQHQARLRNSCKEVFENIIHSYDWFPAELGTVFSGWREACKARGSEALGPRLVCASLFLRLLCPAILSPSLFGLAPEHPAPGPARTLTLIAKVIQNLANCAPFGEKEAYMSFMNSFLEDHGPAMQRFLDQVAMVDVDTAPSGYQGSSDLALQLAVLHAQLCTIFAELDQATRDSLEPLPTILHAIEEGRPVPVSVPMRLPPPPVQVHSSFSAGEKPGFLAPRDLPKHTPLISKSQSLRSVHGAGSWARPRPDEEQAPRLPRPVQRTQSVPAGRPARRRPSSGPRPRPKGSLRTGPTPRGRPWIGASASLPRKPSVPWQRQLDQPRDREQAPGTHRPLSKLAELQCEVAALRQDQKALCGLVESLRTHVRALSEQQELLRSQLQNLDSLIGERTAKLDPELDSPLSEGHRLKSLECRLAEIESTQAQLRDTIQSMQLLPRMSGFGSQPPPLKAPCVNGDTT", "length": 1012, "header": "tr|F1SA02-1|F1SA02_PIG Isoform 1 of RAS protein activator like-3 OS=Sus scrofa OX=9823 GN=RASAL3 PE=4 SV=3 CANONICAL=F1SA02-1" }, "locus": { "chromosome": "2", "start_pos": 62153638, "end_pos": 62142998, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015117.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015117.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014712.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014712.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 125, "start_aa": "Thr", "end_pos": 125, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr125", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 848, "start_aa": "Thr", "end_pos": 848, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr848", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5658442", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "resource": "Reactome", "description": "Regulation of RAS by GAPs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N099-1", "protein_name": "RAS protein activator like-3 isoform X1", "gene_name": "Rasal3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKTECGQTMRRTVTFWSRSRDSAMDPPLPSEAAQTPPSPLTSYRWHTGGGGEKAAGGFRWGRFTGWGRTLSHQEPMVSSQPASRSLFRRVLSAPPKESRPNRLRISKSLWGRHKNAAPPEPKPNPKTPEPEPELVAAPEVPVAQIPEPPTPDMPVWDIGGFTLIEGKLVLFGEEEGPHQIRMGSASSETSIQASMGNLRDPDRTPGKTEPEATGSNQVHNVRGLLKRLKEKKRAKSELGAHGPRDGPPSALGSRESLATLSELDLGAERDVRVWPLHPSLLGEPYCFQVTWEGGSRCFCCRSSSERDRWIEDLRRQFQPSQDNVERQETWLTVWVHEAKGLPRAATPGVRAELWLDGALLARTAPRAGPGQLFWAERFHFEALPPARRLSLRLRGAGPAGATVGRVTLELDEVSIPRAPAAGLERWFPVLGAPTGAALRARIRVRRLRVLPSERYKELAEFLTFHYTRLCEALESTLSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELVRCGGREALLFRENTLATKAIDEYMKLVAQEYLQETLGEVVRCLCASTEDCEVDPSKCPAPELSKHQARLRNSCERVFETIIHSYNWFPAELGNVFSSWREACRARGSEALGPRLVCASLFLRLLCPAILAPSLFGLVPEHPAPGPARTLTLIAKVIQNLANRAPFGEKEAYMAFMNSFLEDHGPAMQHFLDQVAVVDANATSSGYQGSGDLALQLAVLHVQLCTIFAELDQTTQDSLEPLPTILRAIEEGRPVPVSVPMRLPRITNQVHSSFSSGEKPGFLAPRDLPKHTPLVSKSQSLRSFQGAGSWARRRPDEERSQQRPRRVQRTQSVPARRPARRRPSAGPRTRPKDSLRTGPAPCGQTWTGASASLPRKPSVPWQRQLDQPRDRYQPLGTHRPVSKLAEIQCEVAALREEQKALSRLVESLSAHIQALTEQQEQLRCQLQDLDSRLGAGISKLDSEGGLPSNGSHRLKSLEHRLTEMECTQDQLRDALHSLQLLSGTPGSWSQPLPLKTACVNGAELSMGT", "length": 1038 }, "evidence": [ { "id": "F1SA02", "url": "https://omabrowser.org/oma/group/F1SA02/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A6QQ91-1", "protein_name": "RAS protein activator like-3", "gene_name": "RASAL3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDPPSPSRASQTQPVAPSPLTSYRWHSGGGAEKGAGGFRWGRLAGWGRAQSHQETTASSQPAPRSLFRRVLSAPPKESRTSRLKISKSLWGKNKSPPLDSEPEPENPEPEPELEPLATQIPEAPTPDVPVWNIEAFTLLDGKLVLLGNEDEGPRQPRMGSASSESSIHVASGNLKDPDRTPGKTDPEAAGPHQIHNVRGLLKRLKEKKKAKSELGASASRDGPPSALGSRESLATISELDLGAERDVRVWPLHPSLLEEPHCFQVTWAGGSRCFSCRSAAERDRWIEDLRRHFQPSQDNVEREETWLSVWVHEVKGLPRAAAAAPGVRTELWLDGALLARTTPRAGPGQLFWAERFHFEALPPARRLSLRLRGAGPGDAVLGRVALALEELGIPRAPAAGLERWFPLLGAPAGAALRARIRARRLRVLPSERYKELAEFLTFHYARLCGALELALSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELARSGGREALLFRENTLATKAIDEYMKLVAQDYLQETLGQVVRRLCASTEDCEVDPSKCPASDLPQHQSRLRNSCKEVFENIIHSYNWFPAELGTVFSGWREACKARGSEALGPRLVCASLFLRLLCPAILSPSLFGLALEHPAPGPARTLTLIAKVIQNLANRAPFGEKEAYMSFMNTFLEDHGPAMQHFLDQVATVDADTAPSGYQGSSDLALQLAVLHAQLCTIFAELDQATRDNLEPLPTILHAIEEGRPVPVTVPMCLPAPRTQGHSSISAGEKPGFLAPRDLPKHTPLISKSQSLRSVHGAGSWARPRLEEEQPPRLPRPVKRTQSVPAGRPARRRPSAGPRPRPKGSLHAGPAPRGRPWTGASASLPRKPSVPWQRQMDQPRDKDQALGTHRPVGKLAELQCEVAALRQDLKMLSGLVESLSTHIRSLSEQQEQLRTQLQLLDSRLREGTAKLDPGRDRSTNEGHRLKSLECRLAEIESTQAQLKDTIQNLQLLPRTSESQSQPVPLKAPCINGDTT", "length": 1012 }, "evidence": [ { "id": "F1SA02", "url": "https://omabrowser.org/oma/group/F1SA02/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZWW3-1", "protein_name": "RAS protein activator like 3", "gene_name": "Rasal3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDPPLQNEDSQTQPSPLTSYRWHTGGRGEKIAGGFRWGRFAGWGRALSHQEPMVSSQPAPRSLFRRVLSAPPKESRPNRLRFSKSLWGRHKNVVPLEPKLNPKAPEPELELEGAPDLRAAHIPEPPAPDMPVWNIDGFALLEGRLVMLGEEEGPRQIRMGSASSESSMQAALGNLKDPVRTPGKIEPEATGSNQVHNVRKLLKRLKEKKRAKSELGAHTPRDGPSSALGSRESLATLSELDLGVERDVRVWPLHPSLLGEPYCFQVTWAGGSRCFSCRSSAERDRWIEDLRRQFQPSQDNVERQETWLTVWVHEAKGLPRAAAPGVRAELWLDGALLARTAPRAGPDQLFWAERFHFEALPPARRLSLRLRGAGPAGATVGRVVLELDEVSIPRAPAAGLERWFPVLGAPAGAVLRARIRVRCLRVLPSERYKELAEFLTFHYARLCMALEPALSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELERCGGREALLFRENTLATKAIDEYMKLVAQEYLQETLGQVVRSLCASTEDCEVDPSKCPTPELPKCQARLRSSCEEVFENIIHSYNYFPAELGTVFSNWREACKARGSEALGPRLVCASLFLRLLCPAILAPSLFGLAPEHPAPGPARTLTLIAKVIQNLANCAPFGEKEAYMVFMNSFLEDHGPAMRHFLDQVAMVDTDTTPSGYQGSGDLALQLAVLHVQLCTIFAELDQKTRDSLEPLPTILQAIEEGRPVPVSVPMRLPLNTAHVQSSFSSGEKPGFLAPRDLPKHTPLISKSQSLRSFQGAGSWARRRPDGERPQRRPRPVLRTQSVPARRPTHHRPAAGSKPRPKGSLRTGPATSGRAWARTSTSLPRKPSVPWQRQLDQPGDRYQTPGTHRPVGKLAEIQCEVAALREEQKALSHLVESLSTHIQALTEQQEQLRCQLQDLDSRLGAGISKLDSKGGLPSNGSLGLKSLEHRMTEMECSQNQLRDTLQSLQLLSKTPGSRSQPPPLKAPCVNGADLSMGT", "length": 1015 }, "evidence": [ { "id": "F1SA02", "url": "https://omabrowser.org/oma/group/F1SA02/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7FDZ7-1", "protein_name": "Disabled homolog 2-interacting protein isoform X1", "gene_name": "rasal3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGTNKESNAEQAGAASQIEEDMELVPEQNSPVDQDPRQTEDGKLLNTYKWHTGAKAETVAQGAIERLEKGASNKWNKMQSWRKALSEDPGEKSSTANRGGESPSKPDKPTTSRKNPFRRALSEPPGSLLASSAPASSSAQATGSTVQDTTQRGKIRKYLQTVSQRFKKPRLQSTVTEHEKCEPDYVLQDPVRLSWAPPQEVPVWDISNCFLQDGQILIPREEEPMMTVRNRASSCLFSVSLQNISGSHAELNPDPVVPSSGTKLKGQDGGVKGLIKRRLQGDDKRKSSTQLNTAGLSVAARYGSKESLSIPVSAAKSLNLSADQTTVIRPVHSSILGEKYCFQVINSENNHCFGCTSAAERDRWIEDLRRTAHPNKDNCERTENSLCLWINEAKDLPPKKRYYCEVHLDGTLFARTSSRAVGKSVQRSSQAVDGGSGAFGSGGTSGGCQLFWGEFFELDNLPPVTQITLHLFKGEDPKKKRHSRDDATLHPLGSVALPLADIKGRAYQEKWYRIVAYKPPGTSTAKDSVELQASIRVKAKFKNLKILPIERYKEFAEYVTVNYVDMCSSLEPLLNVREKEELAGALVHVLQSIGKAKEFLIDLGSAEVQRLGENEALIFRENTLATKAIDEYMKLVGQKYLIDTLGDFIARLYNGGENCEVDPLKCSPSDLPINQRHLKETCEDVVKRITDMQESFPAELNDIFSSWVSDCEDRGQQDIGQRLISASLFLRFLCPAILSPSLFGLTQPYPETNTLRTLTLTAKVIQNLANFTLFGEKEEYMFFMNDFLTQHWEPMRDFLQKVSNPESEITMSRFDGYVDLPLRLAVLHNLLVDIISVMKQDQIDNLHPLPRILNQITEFLGHDAQQIPVSSNQAMPKPIYVPPRDLPKYSPLQTSMQQLPIDSKPNQCTKERQRRQVQRAFSVPNRPSRQQRQPMKRQASNEELPTQCPDDNQDHRLEISPPSNPEKSKAAAAAKVHWIKQPDGSETCQVRRQDREETNTLDKHAQELSELRMGVEQVTERELEMAKRLEDFIVLTQDQNAQLQAEVQDLRNLLAIREEQLASATFRLGVIEEEREEDERKLNVAVAAVERMNVLEEQFAGLLKDVHHLYAANSDGLRQTYINT", "length": 1124 }, "evidence": [ { "id": "F1SA02", "url": "https://omabrowser.org/oma/group/F1SA02/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q86YV0-1", "protein_name": "RAS protein activator like-3", "gene_name": "RASAL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPPSPSRTSQTQPTATSPLTSYRWHTGGGGEKAAGGFRWGRFAGWGRALSHQEPMVSTQPAPRSIFRRVLSAPPKESRTSRLRLSKALWGRHKNPPPEPDPEPEQEAPELEPEPELEPPTPQIPEAPTPNVPVWDIGGFTLLDGKLVLLGGEEEGPRRPRVGSASSEGSIHVAMGNFRDPDRMPGKTEPETAGPNQVHNVRGLLKRLKEKKKARLEPRDGPPSALGSRESLATLSELDLGAERDVRIWPLHPSLLGEPHCFQVTWTGGSRCFSCRSAAERDRWIEDLRRQFQPTQDNVEREETWLSVWVHEAKGLPRAAAGAPGVRAELWLDGALLARTAPRAGPGQLFWAERFHFEALPPARRLSLRLRGLGPGSAVLGRVALALEELDAPRAPAAGLERWFPLLGAPAGAALRARIRARRLRVLPSERYKELAEFLTFHYARLCGALEPALPAQAKEELAAAMVRVLRATGRAQALVTDLGTAELARCGGREALLFRENTLATKAIDEYMKLVAQDYLQETLGQVVRRLCASTEDCEVDPSKCPASELPEHQARLRNSCEEVFETIIHSYDWFPAELGIVFSSWREACKERGSEVLGPRLVCASLFLRLLCPAILAPSLFGLAPDHPAPGPARTLTLIAKVIQNLANRAPFGEKEAYMGFMNSFLEEHGPAMQCFLDQVAMVDVDAAPSGYQGSGDLALQLAVLHAQLCTIFAELDQTTRDTLEPLPTILRAIEEGQPVLVSVPMRLPLPPAQVHSSLSAGEKPGFLAPRDLPKHTPLISKSQSLRSVRRSESWARPRPDEERPLRRPRPVQRTQSVPVRRPARRRQSAGPWPRPKGSLSMGPAPRARPWTRDSASLPRKPSVPWQRQMDQPQDRNQALGTHRPVNKLAELQCEVAALREEQKVLSRLVESLSTQIRALTEQQEQLRGQLQDLDSRLRAGSSEFDSEHNLTSNEGHSLKNLEHRLNEMERTQAQLRDAVQSLQLSPRTRGSWSQPQPLKAPCLNGDTT", "length": 1011 }, "evidence": [ { "id": "F1SA02", "url": "https://omabrowser.org/oma/group/F1SA02/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C2K5-1", "protein_name": "RAS protein activator like-3", "gene_name": "Rasal3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPECGQTMFRTFWSRSRDSSAMDPPLQSEEDSQTQPSLPSPLTSYRWHTGGSGEKAAGGFRWGRFAGWGRALSHQEPMVNSQPAPRSLFRRVLSAPPKESRSNRLRFSKTLWGRHKNVAPLEPKPNPKAPEPELELVADPDLPVAQIPEPPTPDMPVWNIDGFTLLEGKLVMLGEEEGPRQIRVGSASSENSMQAALGNLKDAVRTPGKTEPEAAGSNQVHNVRKLLKRLKEKKRAKSELGAYTPRDGPPSALGSRESLATLSELDLGAERDVRVWPLHPSLLGEPYCFQVTWAGGSLCFSCRSSAERDRWIEDLRRQFQPSQDNVERQEMWLTVWVHEAKGLPRATVPGVRAELWLDGALLARTAPRAGPGQLFWAERFHFEALPPARRLSLRLRSAGPAGATVGRVVLELDEVSIPRAPAAGLERWFPVLGAPAGAVLRARIRVRCLRVLPSERYKELAEFLTFHYARLCGALEPALSAQAKEELAAAMVRVLRATGRAQALVTDLGTAELARCGGREALLFRENTLATKAIDEYMKLVAQEYLQDTLGQVVRCLCASTEDCEVDPSKCPTPELPKHQARLRDSCEEVFENIIHSYNCFPAELGSVFSSWREACKARGSEALGPRLVCASLFLRLLCPAILAPSLFGLAPEHPAPGPARTLTLIAKVIQNLANCAPFGEKEAYMAFMNSFLEDHGPAMQHFLDQVATVDADTTPSGYQGSGDLALQLAVLHVQLCTIFAELDQKTQDSLEPLPTILRAIEEGRPVPVSVPMRLPRISTQVQSSFFSGEKPGFLAPRDLPKHTPLISKSQSLRSFQGAGSWASRRPDEERPQRRPRPVLRTQSVPARRPTHRRPSAGSKPRPKGSLRMGPAPCGRAWTRASASLPRKPSVPWQRQMDQPGDRYQTTGTHRPVGKLAEIQCEVAIFREAQKALSLLVESLSTQVQALKEQQEHFRCQLQDLYSRLGAGISKLDSKGGLPSNGSHRLKSLEQRLTEMECSQDQLRDSLQSLQLLSKTPGSRSQPLPLKAPCVNGADLSMGT", "length": 1041 }, "evidence": [ { "id": "F1SA02", "url": "https://omabrowser.org/oma/group/F1SA02/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of NK T cell proliferation", "id": "GO:0051142", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051142", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "pmid": "" }, { "name": "negative regulation of Ras protein signal transduction", "id": "GO:0046580", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046580", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "pmid": "" }, { "name": "regulation of intracellular signal transduction", "id": "GO:1902531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902531", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "pmid": "" }, { "name": "cytoplasmic side of membrane", "id": "GO:0098562", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098562", "evidence": [ { "database": "UniProtKB", "id": "F1SA02", "url": "https://www.uniprot.org/uniprotkb/F1SA02" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SA02-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1012, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SA02-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SA02" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SA02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA02" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 285, "end_pos": 405, "start_aa": "Trp", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SA02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA02" }, { "id": "PS50018", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50018" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-GAP", "eco_id": "ECO_0000259", "start_pos": 459, "end_pos": 651, "start_aa": "Ala", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 125, 848 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 217, "end_pos": 219 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SA36-1", "uniprot_ac": "F1SA36", "uniprot_id": "F1SA36_PIG", "mass": { "chemical_mass": 33608.0, "monoisotopic_mass": 33608.0 }, "refseq": {}, "gene_names": [ { "name": "OR2Z1", "type": "recommended", "evidence": [ { "id": "F1SA36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA36" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SA36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA36/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SA36", "url": "https://www.uniprot.org/uniprotkb/F1SA36#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SA36", "url": "https://www.uniprot.org/uniprotkb/F1SA36" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR2Z1", "url": "https://www.uniprot.org/uniprotkb/F1SA36", "locus": { "chromosome": "2", "start_pos": 70637292, "end_pos": 70638221, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013606", "url": "https://www.ensembl.org/id/ENSSSCG00000013606" } ] } } ], "crossref": [ { "id": "F1SA36", "url": "https://alphafold.ebi.ac.uk/entry/F1SA36", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15421", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15421", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737385", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737385", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IFFLTMM", "url": "https://omabrowser.org/oma/group/IFFLTMM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SA36", "url": "https://www.orthodb.org/?gene=F1SA36", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SA36", "url": "https://www.uniprot.org/uniprotkb/F1SA36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SA36-1", "url": "https://www.uniprot.org/uniprotkb/F1SA36-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNMNQSLGSHFILVGLFGPSGSNQLLLSLVAAMFIVGLLGNTMLLFLIRMDSRLHTPMYFLLSQLSLFDVGFPLITIPSSLQGGGSISFGSCAAQIFFLTLIGVAEGILLALMSYDRYVAVCHPLQYHVLMRRQVRLLMVGSSWLGGVLNASIQTSITLHFPYCASRIVDHFFCEVPALVKLSCADTSAYELVLSTSGVLILVLPLSLIATSYGHVLGAVLRMRSEEARNKAFATCSSHITVVGLFYGAAMFMYMVPGAYHSPHQDNVVSLFYSLITPALNPLIYSLRNREVGMALVKVLSRAGLRSK", "length": 309, "header": "tr|F1SA36-1|F1SA36_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR2Z1 PE=3 SV=3 CANONICAL=F1SA36-1" }, "isoforms": [ { "isoform_ac": "F1SA36-1", "url": "https://www.uniprot.org/uniprotkb/F1SA36/entry#F1SA36-1", "sequence": { "sequence": "MGNMNQSLGSHFILVGLFGPSGSNQLLLSLVAAMFIVGLLGNTMLLFLIRMDSRLHTPMYFLLSQLSLFDVGFPLITIPSSLQGGGSISFGSCAAQIFFLTLIGVAEGILLALMSYDRYVAVCHPLQYHVLMRRQVRLLMVGSSWLGGVLNASIQTSITLHFPYCASRIVDHFFCEVPALVKLSCADTSAYELVLSTSGVLILVLPLSLIATSYGHVLGAVLRMRSEEARNKAFATCSSHITVVGLFYGAAMFMYMVPGAYHSPHQDNVVSLFYSLITPALNPLIYSLRNREVGMALVKVLSRAGLRSK", "length": 309, "header": "tr|F1SA36-1|F1SA36_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR2Z1 PE=3 SV=3 CANONICAL=F1SA36-1" }, "locus": { "chromosome": "2", "start_pos": 70638221, "end_pos": 70637295, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014861.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014861.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014460.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014460.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SA36", "url": "https://www.uniprot.org/uniprotkb/F1SA36" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737385", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737385", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8NG97-1", "protein_name": "Olfactory receptor 2Z1", "gene_name": "OR2Z1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDVNQSVASDFILVGLFSHSGSRQLLFSLVAVMFVIGLLGNTVLLFLIRVDSRLHTPMYFLLSQLSLFDIGCPMVTIPKMASDFLRGEGATSYGGGAAQIFFLTLMGVAEGVLLVLMSYDRYVAVCQPLQYPVLMRRQVCLLMMGSSWVVGVLNASIQTSITLHFPYCASRIVDHFFCEVPALLKLSCADTCAYEMALSTSGVLILMLPLSLIATSYGHVLQAVLSMRSEEARHKAVTTCSSHITVVGLFYGAAVFMYMVPCAYHSPQQDNVVSLFYSLVTPTLNPLIYSLRNPEVWMALVKVLSRAGLRQMC", "length": 314 }, "evidence": [ { "id": "F1SA36", "url": "https://omabrowser.org/oma/group/F1SA36/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SA36", "url": "https://www.uniprot.org/uniprotkb/F1SA36" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SA36", "url": "https://www.uniprot.org/uniprotkb/F1SA36" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SA36", "url": "https://www.uniprot.org/uniprotkb/F1SA36" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SA36", "url": "https://www.uniprot.org/uniprotkb/F1SA36" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SA36-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 309, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SA36-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SA36" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SA36", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA36" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 286, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SA46-1", "uniprot_ac": "F1SA46", "uniprot_id": "F1SA46_PIG", "mass": { "chemical_mass": 45693.0, "monoisotopic_mass": 45693.0 }, "refseq": { "ac": "XP_003480848", "name": "actin-like protein 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480848" }, "gene_names": [ { "name": "ACTL9", "type": "recommended", "evidence": [ { "id": "F1SA46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ] }, { "name": "ACTL9", "type": "synonym", "evidence": [ { "id": "XP_003480848", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480848" } ] } ], "protein_names": [ { "name": "Actin like 9", "type": "synonym", "evidence": [ { "id": "F1SA46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA46/entry#names_and_taxonomy" } ] }, { "name": "actin-like protein 9", "type": "synonym", "evidence": [ { "id": "XP_003480848", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480848" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACTL9", "url": "https://www.uniprot.org/uniprotkb/F1SA46", "locus": { "chromosome": "2", "start_pos": 70659497, "end_pos": 70658247, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013605", "url": "https://www.ensembl.org/id/ENSSSCG00000013605" } ] } } ], "crossref": [ { "id": "F1SA46", "url": "https://alphafold.ebi.ac.uk/entry/F1SA46", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013605", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013605", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100736573", "url": "https://www.ncbi.nlm.nih.gov/gene/100736573", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736573", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736573", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HATERMD", "url": "https://omabrowser.org/oma/group/HATERMD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SA46", "url": "https://www.orthodb.org/?gene=F1SA46", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003480848", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480848", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SA46-1", "url": "https://www.uniprot.org/uniprotkb/F1SA46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPNHSNFLEPQPSPEALKPTLNPSSLVVNKTQPQDAPSLVGDRLPPKTGAVVIDMGTGTCKVGFSGQARPTYTVATIVGCQPKKPASNGQPVLETFIGEAARTRPELTLVQPVRNGIVVDWDAAELIWRHMLEHDLRVATRDHPLLFSDPPFSPTTNREKLVEVVFESLNSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLPHATERLDLAGTHLTAFLAEMLQGSGLPLGQQDLDAVENIKHRYCYVAPDFVKEQARPELECRQTLKLPDGRTVTLGKELFRCPELLFSPPEIPGLSPVGIPTMAAQSLHKVPLEVRTDVAQNVLLCGGSSLFTGFEGRFRTELLRSLSSEPHMVVTAQPTRNFSVWIGGSILASLRAFQSCWVLREQYEEQGPHIVYRKCY", "length": 416, "header": "tr|F1SA46-1|F1SA46_PIG Isoform 1 of Actin like 9 OS=Sus scrofa OX=9823 GN=ACTL9 PE=3 SV=1 CANONICAL=F1SA46-1" }, "isoforms": [ { "isoform_ac": "F1SA46-1", "url": "https://www.uniprot.org/uniprotkb/F1SA46/entry#F1SA46-1", "sequence": { "sequence": "MDPNHSNFLEPQPSPEALKPTLNPSSLVVNKTQPQDAPSLVGDRLPPKTGAVVIDMGTGTCKVGFSGQARPTYTVATIVGCQPKKPASNGQPVLETFIGEAARTRPELTLVQPVRNGIVVDWDAAELIWRHMLEHDLRVATRDHPLLFSDPPFSPTTNREKLVEVVFESLNSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLPHATERLDLAGTHLTAFLAEMLQGSGLPLGQQDLDAVENIKHRYCYVAPDFVKEQARPELECRQTLKLPDGRTVTLGKELFRCPELLFSPPEIPGLSPVGIPTMAAQSLHKVPLEVRTDVAQNVLLCGGSSLFTGFEGRFRTELLRSLSSEPHMVVTAQPTRNFSVWIGGSILASLRAFQSCWVLREQYEEQGPHIVYRKCY", "length": 416, "header": "tr|F1SA46-1|F1SA46_PIG Isoform 1 of Actin like 9 OS=Sus scrofa OX=9823 GN=ACTL9 PE=3 SV=1 CANONICAL=F1SA46-1" }, "locus": { "chromosome": "2", "start_pos": 70659494, "end_pos": 70658247, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014860.2", "url": "https://www.ensembl.org/id/ENSSSCT00000014860.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014459.1", "url": "https://www.ensembl.org/id/ENSSSCP00000014459.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736573", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736573", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B3DMA6-1", "protein_name": "Actin-like 9", "gene_name": "Actl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVNGYPKPQPSPETHGPPSLTSNTVLVSKNLEQDSFSVVGDRFPLKTGAVVIDMGTGTCKVGFAGQSQPTYSVATILGCQPKKQATKGQSELETFIGEAARSRPELRLVKPIRNGIVVDWEAAELIWRHILEHDLRVATQEHPLLFSDPPFSPATNREKLVEVAFESLHSPALYVASQSVLSVYAHGRVNGLVVDTGHGVSYTVPVVQGYNLPHAIQRLDLAGNHLTAFLAEMILGSGFSLQQEDLDLVENIKHHYCYLASDFQKEQARPDQECKQTLRLPDGRTVTLGKELFQCPELLFHPPEIPGLSPMGLPAMAEQSLLRVPQDLRPHVAQNVILCGGSSLFTGLESRFRAELLRSLSPEDHVVVMAQPNRNLSVWIGGSILASLHAFQSCWVLREQYEEMGPQILLSYILIAVAPPSTRSASPLPLPFGSTPFLYPIRKEEAFQSTVIERLPRAASGSRYKDQRPSFR", "length": 473 }, "evidence": [ { "id": "F1SA46", "url": "https://omabrowser.org/oma/group/F1SA46/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2T9W4-1", "protein_name": "Actin-like protein 9", "gene_name": "ACTL9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDPNQGNPLEPQDSPEIPKPSLNLSSILAKSTLPQEPPSMVGDRLPPKTGAVVIDMGTGTCKVGFAGQARPTYTVATIVGCQPQKPATSGQPVMETFIGEAARKRPELTLVQPVHSGIVVDWDAAELIWRHMLEHDLRVATRDHPLLFSDPPFSPSTNREKLVEVAFESLSSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLPHATQRLDLAGTHLTAFLAEMLLGSGLPLGQQDLDTVENIKHRYCYVAPDFLKEQARPELECRQTLKLPDGRTVTLGKELFQCPELLFSPPEIPGLSPVGVPTMAQQSLSKVAAELRTDLAQNVLLCGGSSLFTGFQARFQTELLRNLPPEAHVVVMAQPTRNFSVWIGGSILASLRTFQSCWVLREQYEEQGPYIVYRKCY", "length": 416 }, "evidence": [ { "id": "F1SA46", "url": "https://omabrowser.org/oma/group/F1SA46/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8CG27-1", "protein_name": "Actin-like protein 9", "gene_name": "Actl9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDVNGHPKFQPSPETDGPLPLTSSTLMVSKSLQQDSLSMVGDRLPPKTGAVVIDMGTGTCKVGFAGQSQPTYTVATILGCQPKKQATKDQSELETFIGEAARSRPELRLVKPIRNGIVVDWEAAELIWRHILEHDLQVATHEHPLLFSDPPFSPATNREKLVEVAFESLHSPALYVASQSVLSVYAHGRVNGLVVDTGHGVSYTVPVVQGYNLPHAIQRLDLAGNHLTAFLAEMLLGSGFSLQQEDLDLVENIKHHYCYLAPDFQKEQARPDEECKQSLKLPDGRTVTLGKELFQCPELLFHPPEIPGLSPIGLPAMAEQSLLKVPQELRPHVARNVILCGGSSLFTGLEGRFRAELLHSLSPEDHVVVMAHPNRNLSVWIGGSILASLHAFQSCWVLREQYEERGPQVVYRKCY", "length": 415 }, "evidence": [ { "id": "F1SA46", "url": "https://omabrowser.org/oma/group/F1SA46/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TC94-1", "protein_name": "Actin-like protein 9", "gene_name": "ACTL9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDASRPKSSESQSSLEAPRPGPNPSPNVVNKPLQRDSPGMVADRLPPKTGAVVIDMGTGTCKVGFAGQASPTYTVATILGCQPKKPATSGQSGLQTFIGEAARVLPELTLVQPLRSGIVVDWDAAELIWRHLLEHDLRVATHDHPLLFSDPPFSPATNREKLVEVAFESLRSPAMYVASQSVLSVYAHGRVSGLVVDTGHGVTYTVPVFQGYNLLHATERLDLAGNNLTAFLAEMLLQAGLPLGQQDLDLVENIKHHYCYVASDFQKEQARPEQEYKRTLKLPDGRTVTLGKELFQCPELLFNPPEVPGLSPVGLSTMAKQSLRKLSLEMRADLAQNVLLCGGSSLFTGFEGRFRAELLRALPAETHVVVAAQPTRNFSVWIGGSILASLRAFQSCWVLREQYEEQGPYIVYRKCY", "length": 416 }, "evidence": [ { "id": "F1SA46", "url": "https://omabrowser.org/oma/group/F1SA46/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "sperm head", "id": "GO:0061827", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061827", "evidence": [ { "database": "UniProtKB", "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ], "pmid": "" }, { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ], "pmid": "" }, { "name": "perinuclear theca", "id": "GO:0033011", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033011", "evidence": [ { "database": "UniProtKB", "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of cytoskeleton", "id": "GO:0005200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005200", "evidence": [ { "database": "UniProtKB", "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "fertilization", "id": "GO:0009566", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009566", "evidence": [ { "database": "UniProtKB", "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ], "pmid": "" }, { "name": "acrosome assembly", "id": "GO:0001675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001675", "evidence": [ { "database": "UniProtKB", "id": "F1SA46", "url": "https://www.uniprot.org/uniprotkb/F1SA46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SA46-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 416, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SA46-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SA46" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 30, "end_pos": 32 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SA78-1", "uniprot_ac": "F1SA78", "uniprot_id": "F1SA78_PIG", "mass": { "chemical_mass": 16633.0, "monoisotopic_mass": 16633.0 }, "refseq": { "ac": "XP_003128667", "name": "membrane protein FAM174B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128667" }, "gene_names": [ { "name": "FAM174B", "type": "recommended", "evidence": [ { "id": "F1SA78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA78" } ] }, { "name": "FAM174B", "type": "synonym", "evidence": [ { "id": "XP_003128667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128667" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 174 member B", "type": "synonym", "evidence": [ { "id": "F1SA78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA78/entry#names_and_taxonomy" } ] }, { "name": "membrane protein FAM174B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003128667", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128667" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SA78", "url": "https://www.uniprot.org/uniprotkb/F1SA78" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM174B", "url": "https://www.uniprot.org/uniprotkb/F1SA78", "locus": { "chromosome": "7", "start_pos": 86304979, "end_pos": 86268959, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002265", "url": "https://www.ensembl.org/id/ENSSSCG00000002265" } ] } } ], "crossref": [ { "id": "F1SA78", "url": "https://alphafold.ebi.ac.uk/entry/F1SA78", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002265", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002265", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102162743", "url": "https://www.ncbi.nlm.nih.gov/gene/102162743", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102162743", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162743", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SA78", "url": "https://www.orthodb.org/?gene=F1SA78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28607", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28607", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28607:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28607:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003128667", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128667", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SA78", "url": "https://www.uniprot.org/uniprotkb/F1SA78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SA78-1", "url": "https://www.uniprot.org/uniprotkb/F1SA78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAAPLAALLLPLLLLALLAAPAVRASRADSVAAPQPGPESQPRPPPGPEPGNATRTGSGEAAGGGGSYNSSGDALVTRISSLLRDLPTLKAAVIVACAFTALLIACLLLRVFRSGKRLKKTRKYDIITTPAERVEMAPLNEEDDEDEDSTVFDIKYR", "length": 158, "header": "tr|F1SA78-1|F1SA78_PIG Isoform 1 of Family with sequence similarity 174 member B OS=Sus scrofa OX=9823 GN=FAM174B PE=3 SV=3 CANONICAL=F1SA78-1" }, "isoforms": [ { "isoform_ac": "F1SA78-1", "url": "https://www.uniprot.org/uniprotkb/F1SA78/entry#F1SA78-1", "sequence": { "sequence": "MRAAPLAALLLPLLLLALLAAPAVRASRADSVAAPQPGPESQPRPPPGPEPGNATRTGSGEAAGGGGSYNSSGDALVTRISSLLRDLPTLKAAVIVACAFTALLIACLLLRVFRSGKRLKKTRKYDIITTPAERVEMAPLNEEDDEDEDSTVFDIKYR", "length": 158, "header": "tr|F1SA78-1|F1SA78_PIG Isoform 1 of Family with sequence similarity 174 member B OS=Sus scrofa OX=9823 GN=FAM174B PE=3 SV=3 CANONICAL=F1SA78-1" }, "locus": { "chromosome": "7", "start_pos": 86303130, "end_pos": 86269052, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002523.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002523.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002460.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002460.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SA78", "url": "https://www.uniprot.org/uniprotkb/F1SA78" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102162743", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162743", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SA78", "url": "https://www.uniprot.org/uniprotkb/F1SA78" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SA78", "url": "https://www.uniprot.org/uniprotkb/F1SA78" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "F1SA78", "url": "https://www.uniprot.org/uniprotkb/F1SA78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SA78-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 158, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SA78-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SA78" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 53, "end_pos": 55 }, { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SA99-1", "uniprot_ac": "F1SA99", "uniprot_id": "F1SA99_PIG", "mass": { "chemical_mass": 68547.0, "monoisotopic_mass": 68547.0 }, "refseq": { "ac": "XP_020943517", "name": "TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943517" }, "gene_names": [ { "name": "TAF1B", "type": "recommended", "evidence": [ { "id": "F1SA99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA99" } ] }, { "name": "TAF1B", "type": "synonym", "evidence": [ { "id": "XP_020943517", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943517" } ] } ], "protein_names": [ { "name": "TATA box-binding protein-associated factor RNA polymerase I subunit B", "type": "recommended", "evidence": [ { "id": "F1SA99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA99/entry#names_and_taxonomy" } ] }, { "name": "TATA box-binding protein-associated factor 1B", "type": "synonym", "evidence": [ { "id": "F1SA99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA99/entry#names_and_taxonomy" } ] }, { "name": "TATA box-binding protein-associated factor RNA polymerase I subunit B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020943517", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943517" } ] }, { "name": "Transcription initiation factor SL1/TIF-IB subunit B", "type": "synonym", "evidence": [ { "id": "F1SA99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA99/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of RNA polymerase I core factor complex that acts as a GTF2B/TFIIB-like factor and plays a key role in multiple steps during transcription initiation such as pre-initiation complex (PIC) assembly and postpolymerase recruitment events in polymerase I (Pol I) transcription. Binds rDNA promoters and plays a role in Pol I recruitment as a component of the SL1/TIF-IB complex and, possibly, directly through its interaction with RRN3.", "evidence": [ { "database": "UniProtKB", "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99#function" }, { "database": "UniProtKB", "id": "ARBA00025013", "url": "https://www.uniprot.org/uniprotkb/ARBA00025013#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TAF1B", "url": "https://www.uniprot.org/uniprotkb/F1SA99", "locus": { "chromosome": "3", "start_pos": 126527385, "end_pos": 126586274, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008637", "url": "https://www.ensembl.org/id/ENSSSCG00000008637" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008637", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008637", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "397176", "url": "https://www.ncbi.nlm.nih.gov/gene/397176", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048540", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048540", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:397176", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397176", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SFRFCWG", "url": "https://omabrowser.org/oma/group/SFRFCWG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SA99", "url": "https://www.orthodb.org/?gene=F1SA99", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31576", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31576", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31576:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31576:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5250924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73762", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73762", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73772", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73863", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73863", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943517", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943517", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SA99-1", "url": "https://www.uniprot.org/uniprotkb/F1SA99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLEEAKEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERSKEVINTGAIPNTKIQAINRGLKRKRKLEKGWDWYVCEGFQHILCQQAEALQTLGVGPELKDEVLHNFWKRYLQKSKQAYCKNPVHTSRRKTTVLEDNPSHSDWDSEPELLSDFSCPSFVESGAESQPDVHTQKPFRIIKASHSETSVCSGSLDGVEYSLRKDKDIVKMTVPRTLAFCYLSLLWQRETVTLSDLLRFAEEDCIPYINAFQHFPEEMKLYGRDKGIFAIESWPTYEDIYKKVIEVATFLDLPRFPAITEDCYLHPNILCMKFLMEVNLPVEMHDVTCQVVKVTGIGEVDFLTFDPIAKKGKAVKYDVQAVAVVIAALKLLFLLDDSLEWSLSNIAEKHNEGNKEDKPWFDFRKWYQVMKKAIDEKKQKWEEARAKYLWKSERPLYHSAIDKPVVYKRREMVVSLQKQFSTLIDSTPSVEKRSPSSFQFNWTAEDSDRTCFHEHSLQGVLKQKGQSLTTKNSLYWLSTQKFCRSYCKHVTTYEESNFSQSYQFILNLFSFLLRIKTSLLHEEVSLIEKRLFKTKYTKTTKKSSRSRKARKS", "length": 589, "header": "tr|F1SA99-1|F1SA99_PIG Isoform 1 of TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Sus scrofa OX=9823 GN=TAF1B PE=3 SV=3 CANONICAL=F1SA99-1" }, "isoforms": [ { "isoform_ac": "F1SA99-1", "url": "https://www.uniprot.org/uniprotkb/F1SA99/entry#F1SA99-1", "sequence": { "sequence": "MDLEEAKEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERSKEVINTGAIPNTKIQAINRGLKRKRKLEKGWDWYVCEGFQHILCQQAEALQTLGVGPELKDEVLHNFWKRYLQKSKQAYCKNPVHTSRRKTTVLEDNPSHSDWDSEPELLSDFSCPSFVESGAESQPDVHTQKPFRIIKASHSETSVCSGSLDGVEYSLRKDKDIVKMTVPRTLAFCYLSLLWQRETVTLSDLLRFAEEDCIPYINAFQHFPEEMKLYGRDKGIFAIESWPTYEDIYKKVIEVATFLDLPRFPAITEDCYLHPNILCMKFLMEVNLPVEMHDVTCQVVKVTGIGEVDFLTFDPIAKKGKAVKYDVQAVAVVIAALKLLFLLDDSLEWSLSNIAEKHNEGNKEDKPWFDFRKWYQVMKKAIDEKKQKWEEARAKYLWKSERPLYHSAIDKPVVYKRREMVVSLQKQFSTLIDSTPSVEKRSPSSFQFNWTAEDSDRTCFHEHSLQGVLKQKGQSLTTKNSLYWLSTQKFCRSYCKHVTTYEESNFSQSYQFILNLFSFLLRIKTSLLHEEVSLIEKRLFKTKYTKTTKKSSRSRKARKS", "length": 589, "header": "tr|F1SA99-1|F1SA99_PIG Isoform 1 of TATA box-binding protein-associated factor RNA polymerase I subunit B OS=Sus scrofa OX=9823 GN=TAF1B PE=3 SV=3 CANONICAL=F1SA99-1" }, "locus": { "chromosome": "3", "start_pos": 126586224, "end_pos": 126527957, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009449.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009449.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009206.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009206.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:397176", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397176", "resource": "KEGG Pathway" }, { "id": "R-SSC-5250924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "resource": "Reactome", "description": "B-WICH complex positively regulates rRNA expression" }, { "id": "R-SSC-73762", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73762", "resource": "Reactome", "description": "RNA Polymerase I Transcription Initiation" }, { "id": "R-SSC-73772", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "resource": "Reactome", "description": "RNA Polymerase I Promoter Escape" }, { "id": "R-SSC-73863", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73863", "resource": "Reactome", "description": "RNA Polymerase I Transcription Termination" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XJ20-1", "protein_name": "TATA box-binding protein-associated factor RNA polymerase I subunit B", "gene_name": "TAF1B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDEEDAGDFNERCAQCSEVNWGLTDGGRFYCRTCHNVIERTREVVSTDVIPNARVQTISKGSRSQKKTDEGWEWYVCEGFQLVLKQQAEALEALGVCPQMKDEVLCNFWRRYLQKSQQAYCNRPAGETIKALSVCDSSTDMDSEPEQHSLLHFLSVSESDGDLQTDCSYASSAGKVSESTSVCSGSVDGSLYVRKNRKEKLRMSMPMTLSFCYMALLWLKEPMTLSDLLRFVVEGHIPYFNAYQHFPEKMKLYGLDLRIFCVELGAYHTLVKYFPVFEVPKPRQIESVFGGFGKQSWPVYEEVYNKMVELAAFLDLPRFPDITDNCFLHPDVLCMKYLMEANLPDELHNWTCRLVKKTSIGEVDFLTLTPGNKSTRKVKYDVLAAAVIVVVLKLLFLLDDHYEWLLSDFSAEGNKNNKEGEGGPYFEFKKWYRVIKCTLDVEQKKLDEEKAKYLWKCEKPLFYSVKKKSKILRRRQMVENLQNQFGKLSGSVQPAGRPNPSSFLLSWSEESTDGSCFHGHSLKGILQEKHGLLTAINTDYWLCTDKLCNEKLCGHLAHYREEDFPKSYHFVLRLFSFLLRIQPSSIHEEVCAIEHKLFNKKLYKKPKRKRSLRK", "length": 614 }, "evidence": [ { "id": "F1SA99", "url": "https://omabrowser.org/oma/group/F1SA99/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZYB7-1", "protein_name": "TATA box-binding protein-associated factor RNA polymerase I subunit B", "gene_name": "Taf1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVEQMKAFTDRCSQCAAVSWGLTDEGKYYCTSCHNVTDRSEEVVSTAVIPNTKINSISRGLRQRSKHEKGWDWYVCEGFQCILYHQAEALETLGVSPELKNEVLHSFWKRYLQKSKQAYCKNPVRTSGRKAKVLEDNLQSSDWGSDFELLSDTTCPPESGAEFQSDSQTPKPFPATKRSSKSASVCSGSVDGVEYSERKEKGLLKMTVPRTLALCYLSLLWQRETITLSDLLRFVEEDRIPYINAFKVFPEEMKVYGRDKGIFAVESWPDYEDIYKNMIEVAVFLDLPRFPDITEDCYLHPNTLCMKYLLEVNLPEEMYTLTCQVVKLTGIGEVDFLTFDPIAKMTRTVKHDVQAVAVIVLVLKLLFLLDDKLEWSYSDLAEAYNEGHKEETPQFDFRKWYQVMKKTFDEKRRKWEEARAKYVWKTKRPLYRSHIDKSVAYKRREMVENLQKQFSALIGSAPEVERQAPSSFQLNWTGEDTGSPCFHGHSLQGLLISKGQALITKNSLYWLSTHKFCKSYCKHVTTYEESNFSLSYQFILNIFSFLLRIKTSALHEEVSLLEKKLFEKKYNESKRSSRSKKVRRH", "length": 586 }, "evidence": [ { "id": "F1SA99", "url": "https://omabrowser.org/oma/group/F1SA99/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1R3W0-1", "protein_name": "TATA box-binding protein-associated factor RNA polymerase I subunit B", "gene_name": "taf1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDEQITGGYSEPCGQCAAVDWGVSDEGQFFCKSCHNVIEKIREVEDVTSLHHKHGRISIVRKPKKKKHDSEREWLVCEGFQFILKHQAKALVSLGVCMKFETEVLWNFWKRYLQNTRQAFTENPVSTARFEVFMKSQSGSESDTQSHQSCYSEASSDTEMSVSGISVDGRSAVSSESLHSIPQKGRRGRVSNLMSMPRTLAMCYLALLWVREAITLTDLLRMVAEGHIPYLHLHETFPAEMRMFGKDVQIFRVLFFPSYAFIKKEALVLAKIMKLPSFPTISQDCLFHPVPLTVRYLLEANLPDALHVWVQKVITGAGMDSDSFLTFDPTDKKPHLLSYDVQAVAVIIVAMKLLFKLDDHVEWKLSHDAAKKKNNKVFSLERWFNIVQPVLEQARLKEEQEEARRQWNFANPFITNLKRKSLVLKKRRVTDHLQQRFQKFADPAPEQSTSTTNSHTSFRFSWGEEEGSDGPSMFNQNLDCTVKAKAVNGLANQRYWHPELRICPENKCVSHFSKFEPSLPRMFVWVLDLFSFILGVLQSDVYEEVLNVERRFLKKNYRLDSRLTSSHLKKKKGPIL", "length": 576 }, "evidence": [ { "id": "F1SA99", "url": "https://omabrowser.org/oma/group/F1SA99/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P97358-1", "protein_name": "TATA box-binding protein-associated factor RNA polymerase I subunit B", "gene_name": "Taf1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDVEEVKAFRDRCSQCAAVSWGLTDEGKYYCTSCHNVTDRSEEVVSAADIPNTKINSINRGLRQRSKHEKGWDWYVCEGFQCILYHQAKALETLGVSPELKNEVLHNFWKRYLQKSKQAYCKNPVRTSGRKAKVLEDSVQSSDLGSDLELLSDTTCPLESEAEFQSDPQIPKPFPVTKGSPKSASVCSGSVDGVEYSERKEKGLVKMTVPRTLALCSLSLLWQRETITVSDLLRFVEEDHIPYINAFKLFPEEMKVYGRDKGIFAIESWPDYEDIYKNMIELAIFLDLPRFPDITEDCYLHPNTLCMKYLLEVNLPDEMHTLTCQVVKLTGIGEVDFLTFDPIAKTKRTVKYDVQAMAVIVVVLKLLFLLDDKLEWSYSDLAEAYNEQHREDTPQFDFRKWYQVMKKTFDEKRRKWEEARARYAWKTKRPLYRSHIDKSVAYKRRKMVENLQKQFSALVGSSPVVEKQAPSSFQFNWTEEGTDSPCFHGHSLQGLLIMKGQSMITKNSLYWLSTQKFCKSYCKHVTTYEESNFSLSYQFILNIFSFLLRIKTSALHEEVSLLEKKLFEKKYNESKKSSGSKKGRRH", "length": 586 }, "evidence": [ { "id": "F1SA99", "url": "https://omabrowser.org/oma/group/F1SA99/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q1JQD6-1", "protein_name": "TATA box-binding protein-associated factor RNA polymerase I subunit B", "gene_name": "TAF1B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDLEEAREFRERCSQCAAVSWGLTDEGKYYCTSCHNVTERSREVIDTGAIPNTKIQAINRGLKRKRKLEKGWDWYVCEGFQHILYQQAEALQSLGVGPELKNEVLHNFWKRYLQKSKQAYCKNPVYTSRRKTTVLEDNLSHSDWESEPELLSDMSCLSFAESGAESQPDVRTPKPFPIIKASHSETTSVCSGSLDGVEYSLRKEKGVMKMSVPRTLAFCYLSLLWQRETITLSDLLRFVEEEHIPYIHAFQHFPEEMKLYGRDKGIFAIESWPNYEVIFKKIIEVATFLDLPRFPDITENCYLHPNILCMKYLMEVNLPDEMHNVTCLVVKSTGIGEVDFLRFDPIAKKAKTVKYDVQAVAVIVVALKLLFLLDDNLEWSLSNIAKKYNEKNKEDKPWFDFRKWYQVMKKAIDEKKQKWEEARAKFLWKGEKPLYYSAIDRPVVYKRREMVVSLQKQFSTLVDSAPNVEKKKPSSFQFNWTEEDSERPCFHGHSLQGVLQQKGQSLTTKNSLYWLSTQKFCKSHCKHVTTYEESNFSLSYQFILNLFSFLLRIKTSFLHEEVSLIEKRLFKAKYNKTNKKSSRSRKTRKY", "length": 590 }, "evidence": [ { "id": "F1SA99", "url": "https://omabrowser.org/oma/group/F1SA99/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q53T94-1", "protein_name": "TATA box-binding protein-associated factor RNA polymerase I subunit B", "gene_name": "TAF1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLEEAEEFKERCTQCAAVSWGLTDEGKYYCTSCHNVTERYQEVTNTDLIPNTQIKALNRGLKKKNNTEKGWDWYVCEGFQYILYQQAEALKNLGVGPELKNDVLHNFWKRYLQKSKQAYCKNPVYTTGRKPTVLEDNLSHSDWASEPELLSDVSCPPFLESGAESQSDIHTRKPFPVSKASQSETSVCSGSLDGVEYSQRKEKGIVKMTMPQTLAFCYLSLLWQREAITLSDLLRFVEEDHIPYINAFQHFPEQMKLYGRDRGIFGIESWPDYEDIYKKTVEVGTFLDLPRFPDITEDCYLHPNILCMKYLMEVNLPDEMHSLTCHVVKMTGMGEVDFLTFDPIAKMAKTVKYDVQAVAIIVVVLKLLFLLDDSFEWSLSNLAEKHNEKNKKDKPWFDFRKWYQIMKKAFDEKKQKWEEARAKYLWKSEKPLYYSFVDKPVAYKKREMVVNLQKQFSTLVESTATAGKKSPSSFQFNWTEEDTDRTCFHGHSLQGVLKEKGQSLLTKNSLYWLSTQKFCRCYCTHVTTYEESNYSLSYQFILNLFSFLLRIKTSLLHEEVSLVEKKLFEKKYSVKRKKSRSKKVRRH", "length": 588 }, "evidence": [ { "id": "F1SA99", "url": "https://omabrowser.org/oma/group/F1SA99/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "RNA polymerase transcription factor SL1 complex", "id": "GO:0005668", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005668", "evidence": [ { "database": "UniProtKB", "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99" } ], "pmid": "" }, { "name": "RNA polymerase I core factor complex", "id": "GO:0070860", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070860", "evidence": [ { "database": "UniProtKB", "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99" } ], "pmid": "" }, { "name": "RNA polymerase I core promoter sequence-specific DNA binding", "id": "GO:0001164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001164", "evidence": [ { "database": "UniProtKB", "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99" } ], "pmid": "" }, { "name": "nucleolar large rRNA transcription by RNA polymerase I", "id": "GO:0042790", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042790", "evidence": [ { "database": "UniProtKB", "id": "F1SA99", "url": "https://www.uniprot.org/uniprotkb/F1SA99" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 478, "end_pos": 480, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SA99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA99" }, { "id": "PF11781", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11781" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRN7-type", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 39, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SA99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA99" }, { "id": "PF20645", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20645" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rrn7/TAF1B C-terminal cyclin", "eco_id": "ECO_0000259", "start_pos": 270, "end_pos": 460, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SA99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SA99" }, { "id": "PF20644", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20644" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rrn7/TAF1B N-terminal cyclin", "eco_id": "ECO_0000259", "start_pos": 80, "end_pos": 253, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 36, "end_pos": 38 }, { "start_pos": 478, "end_pos": 480 }, { "start_pos": 534, "end_pos": 536 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAB1-1", "uniprot_ac": "F1SAB1", "uniprot_id": "F1SAB1_PIG", "mass": { "chemical_mass": 49059.0, "monoisotopic_mass": 49059.0 }, "refseq": { "ac": "XP_005656832", "name": "beta-1,3-galactosyltransferase 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656832" }, "gene_names": [ { "name": "B3GALT2", "type": "recommended", "evidence": [ { "id": "F1SAB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB1" } ] }, { "name": "B3GALT2", "type": "synonym", "evidence": [ { "id": "XP_005656832", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656832" } ] } ], "protein_names": [ { "name": "Hexosyltransferase", "type": "recommended", "evidence": [ { "id": "F1SAB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB1/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.-", "type": "synonym", "evidence": [ { "id": "F1SAB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB1/entry#names_and_taxonomy" } ] }, { "name": "beta-1,3-galactosyltransferase 2", "type": "synonym", "evidence": [ { "id": "XP_005656832", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656832" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAB1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "B3GALT2", "url": "https://www.uniprot.org/uniprotkb/F1SAB1", "locus": { "chromosome": "10", "start_pos": 624131, "end_pos": 613608, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010800", "url": "https://www.ensembl.org/id/ENSSSCG00000010800" } ] } } ], "crossref": [ { "id": "F1SAB1", "url": "https://alphafold.ebi.ac.uk/entry/F1SAB1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010800", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010800", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525885", "url": "https://www.ncbi.nlm.nih.gov/gene/100525885", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002659", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002659", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525885", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525885", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TSYHFKY", "url": "https://omabrowser.org/oma/group/TSYHFKY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAB1", "url": "https://www.orthodb.org/?gene=F1SAB1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11214", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11214", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11214:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11214:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01762", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01762", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19341", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19341", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9037629", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9037629", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005656832", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656832", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAB1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAB1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLQRRRRHCCFAKMSWSAKRSLFRTRLTAVLSLVFLFAMFLCFNHHDWLPGRAGFKENPVTYTLRGFRSTKSETNHSSLRNIWKETVPQTLRPQTATNSNHTDLSPQGVTGLENTLSANGSIYSEKGTGHPNSYHFKYIINEPEKCQEKSPFLILLIAAEPGQIEARRAIRQTWGNESLAPGIRITRIFLLGVSVKLQGHLQRAILEESRQHHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPQSPYVMKTDSDMFVNTEYLIHKLLKPDLPPRHNYFTGYLMRGYAPNRNRDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFKVSLGIRRLHLEDVYVGICLAKLRIDPVPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIKYWNHLQQNKHNACANAAKEKAGRYRHRKLH", "length": 422, "header": "tr|F1SAB1-1|F1SAB1_PIG Isoform 1 of Hexosyltransferase OS=Sus scrofa OX=9823 GN=B3GALT2 PE=3 SV=1 CANONICAL=F1SAB1-1" }, "isoforms": [ { "isoform_ac": "F1SAB1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1/entry#F1SAB1-1", "sequence": { "sequence": "MLQRRRRHCCFAKMSWSAKRSLFRTRLTAVLSLVFLFAMFLCFNHHDWLPGRAGFKENPVTYTLRGFRSTKSETNHSSLRNIWKETVPQTLRPQTATNSNHTDLSPQGVTGLENTLSANGSIYSEKGTGHPNSYHFKYIINEPEKCQEKSPFLILLIAAEPGQIEARRAIRQTWGNESLAPGIRITRIFLLGVSVKLQGHLQRAILEESRQHHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPQSPYVMKTDSDMFVNTEYLIHKLLKPDLPPRHNYFTGYLMRGYAPNRNRDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFKVSLGIRRLHLEDVYVGICLAKLRIDPVPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIKYWNHLQQNKHNACANAAKEKAGRYRHRKLH", "length": 422, "header": "tr|F1SAB1-1|F1SAB1_PIG Isoform 1 of Hexosyltransferase OS=Sus scrofa OX=9823 GN=B3GALT2 PE=3 SV=1 CANONICAL=F1SAB1-1" }, "locus": { "chromosome": "10", "start_pos": 620224, "end_pos": 618959, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011816.3", "url": "https://www.ensembl.org/id/ENSSSCT00000011816.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011513.1", "url": "https://www.ensembl.org/id/ENSSSCP00000011513.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAB1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525885", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525885", "resource": "KEGG Pathway" }, { "id": "R-SSC-9037629", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9037629", "resource": "Reactome", "description": "Lewis blood group biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LED7-1", "protein_name": "Hexosyltransferase", "gene_name": "B3galt2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLQWRRRHCCFAKMTWNAKRSLFRTHLVGVLSLVFLFAMFLFFNHHDWLPGRPGFKENPVTYTFRGFRSTKSETNHSSLRNIWKDAVPQTLRPQTATNSNNTDLSPQGVTGLENTLSANGSNYNEKGTGYPNSYHFKYIINEPEKCQEKSPFLILLIAAEPGQIEARRAIRQTWGNESLAPGIQITRIFLLGISIKLNGYLQHAILEESRQYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLIHKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFKVSLGIRRLHLEDVYVGICLAKLRIDPVPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIKYWNHLQQNKHNACANAAKEKAGRYRHRKLH", "length": 422 }, "evidence": [ { "id": "F1SAB1", "url": "https://omabrowser.org/oma/group/F1SAB1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0YIB2-1", "protein_name": "Hexosyltransferase", "gene_name": "B3GALT2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLQWRRRHCCLAKMTWNTKRSLFRTHLIGLISLVFLFAVFLFFNHHDWLPGRAGFRENPMTYTIRGFRSTKSEMNHSSLRNTWKDAVPQTLRPQIVTNPNNTDLSPQGVTGLENTLSANGSIYNEKGTGHPISYHFKYIINEPEKCQEKVPFLILLIAAEPGQVEARQAIRQTWGNESLTPGIQIVRIFLLGLSTKTNGYLQRTIQEESRQYHDIVQQEYLDTYYNLTIKTLMGMNWVASHCPSVPYVMKTDSDMFVNTEYLIHKLLKPELPPRHKYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFKVSLGIRRLHLEDVYVGICLAKLRIDPMPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIKYWNHLQQNKHNACANAAKEKASRYRHRKLH", "length": 422 }, "evidence": [ { "id": "F1SAB1", "url": "https://omabrowser.org/oma/group/F1SAB1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O43825-1", "protein_name": "Beta-1,3-galactosyltransferase 2", "gene_name": "B3GALT2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLQWRRRHCCFAKMTWNAKRSLFRTHLIGVLSLVFLFAMFLFFNHHDWLPGRAGFKENPVTYTFRGFRSTKSETNHSSLRNIWKETVPQTLRPQTATNSNNTDLSPQGVTGLENTLSANGSIYNEKGTGHPNSYHFKYIINEPEKCQEKSPFLILLIAAEPGQIEARRAIRQTWGNESLAPGIQITRIFLLGLSIKLNGYLQRAILEESRQYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHIPYVMKTDSDMFVNTEYLINKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFKVSLGIRRLHLEDVYVGICLAKLRIDPVPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIKYWNHLQQNKHNACANAAKEKAGRYRHRKLH", "length": 422 }, "evidence": [ { "id": "F1SAB1", "url": "https://omabrowser.org/oma/group/F1SAB1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O54905-1", "protein_name": "Beta-1,3-galactosyltransferase 2", "gene_name": "B3galt2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLQWRRRHCCFAKMTWSPKRSLLRTPLTGVLSLVFLFAMFLFFNHHDWLPGRPGFKENPVTYTFRGFRSTKSETNHSSLRTIWKEVAPQTLRPHTASNSSNTELSPQGVTGLQNTLSANGSIYNEKGTGHPNSYHFKYIINEPEKCQEKSPFLILLIAAEPGQIEARRAIRQTWGNETLAPGIQIIRVFLLGISIKLNGYLQHAIQEESRQYHDIIQQEYLDTYYNLTIKTLMGMNWVATYCPHTPYVMKTDSDMFVNTEYLIHKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSKWYMPPDLYPSERYPVFCSGTGYVFSGDLAEKIFKVSLGIRRLHLEDVYVGICLAKLRVDPVPPPNEFVFNHWRVSYSSCKYSHLITSHQFQPSELIKYWNHLQQNKHNACANAAKEKAGRYRHRKLH", "length": 422 }, "evidence": [ { "id": "F1SAB1", "url": "https://omabrowser.org/oma/group/F1SAB1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SAB1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "glycoprotein biosynthetic process", "id": "GO:0009101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009101", "evidence": [ { "database": "UniProtKB", "id": "F1SAB1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1" } ], "pmid": "" }, { "name": "galactosylceramide biosynthetic process", "id": "GO:0006682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006682", "evidence": [ { "database": "UniProtKB", "id": "F1SAB1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1" } ], "pmid": "" }, { "name": "glucosylceramide metabolic process", "id": "GO:0006678", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006678", "evidence": [ { "database": "UniProtKB", "id": "F1SAB1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "N-acetyl-beta-D-glucosaminide beta-(1,3)-galactosyltransferase activity", "id": "GO:0008499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008499", "evidence": [ { "database": "UniProtKB", "id": "F1SAB1", "url": "https://www.uniprot.org/uniprotkb/F1SAB1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-9603989", "name": "B3GALTs transfer Gal to GlcNAc-1,3-Gal-R to form Type 1 chain", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [ "R-ALL-9604808" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9603989", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9603989" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-9604808", "participant_name": "GlcNAc-1,3-Gal-R [Golgi lumen]", "crossref": [ { "id": "140876", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAB1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 422, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAB1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAB1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB1" }, { "id": "PF19341", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19341" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta-1,3-galactosyltransferase 2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 75, "end_pos": 154, "start_aa": "Asn", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00320ZP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00371DJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00569WM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00767OE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00909PI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00982QD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01034MJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01097FM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01125EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01784XC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01801SZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01922RI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02032MW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02296PF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02379AH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02562EQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02582JY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G03260OU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03393PF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03414KZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03542TR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03626PN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03644PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03668AQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03681UF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03770XP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03877AD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03912QC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G03975EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04088QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04406VW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04512BK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04548YV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04984PI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05107KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05208JP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05293CX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G05339VD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G05378UG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05543BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05698FC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G05767GS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05784LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05801MA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05946VK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G06067KZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G06215DG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G06377PM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G06400QJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G06676BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06925YI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07015TW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07147QM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G07322RE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07371PE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G07410AW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G07699XI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07829JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07870PN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G08005PG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G08115PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08190JB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G08302GT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G08425VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08493GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G08624KO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G08892TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08894MB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G08941LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08983AS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G09087VQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G09362VG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G09424UT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09579UY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G09698FP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09730EH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G09857WN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G09921WG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G09941BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09976WS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G10174LI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10182XZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G10197JO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G10209QU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G10448ZR", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G10453CW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10480CH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G10491ZZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G10529ZR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G10540LB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G10614GM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G10650OV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G10664FL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G10800FG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G10874QT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G10897DJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G10924UK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G11213NA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11260US", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G11288UE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11323LX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11359ZJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11360MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G11647UD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12000YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12187FG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G12241WD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12254MW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12428MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12448WG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G12493UH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12572NU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G12893IS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G12962XA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12991XQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13122AV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G13168IS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13483MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13535FD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13580OP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13659RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G13824WQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G14014EQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14099UA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14191ZT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G14356TR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14380OJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G14512NS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G14555ST", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14645TH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14646AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14815WH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14870EV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G14899VS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14942ZU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G15306QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G15393WU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15605OU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G15642UW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15696VL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G15757QE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G15859AU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16038YA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16344NR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16515AY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G16527XF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G16679DU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G16742CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16827VK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16938IW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17118PL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17465IO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17597KD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17765UK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17827ZK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18133RH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18135ML", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18201QM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18264WJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G18423OV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18463FK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18707MU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18745JI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18768EK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18878PL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18932FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18956GV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19212IL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19382GM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19393PU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19697JA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19749DC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19854WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G19957ZD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20176YB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20308RQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20359JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20438JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20544CY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20815TK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G20873FQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21021HG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G21029LJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21072IJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21219OJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21311PN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G21343HW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21411AR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21675EO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22174MI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22233KL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22260JR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G22385OT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22550VJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22732WO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G22864HF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22979QH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23134DZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23334BB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23419AQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23511JD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23601EL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23726CO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23946TS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24030QV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24095BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24229GD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24256XU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24283IO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24336IA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24346JZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24635ZS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24984RR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24987DS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25498HI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25744PP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25955UH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26179TW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26264SQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26768NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27048LG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27721RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27759QN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G27911BB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G28023AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28149BN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G28337WM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28575RE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G28599FB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G28674WF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G28882QV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G28948UC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G29130SY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G29277BJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G29524AT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29630IH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G29706UC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G29797YX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30085SO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30319FW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30356CR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30447NS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30524AR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30585MP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30697FM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30901GC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G30976UY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31018GZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31145ZM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31196DF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31415DK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31421EZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31422IN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31776ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31822CM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31828QS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G31873MP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31982GY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32156DB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G32556JI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32889SE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G33052SB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33068BF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33070IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G33089BG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G33415VV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G33418YX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33704YC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33742YO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33748AU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33963JX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34029JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34293AU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34863TS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34891MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34982PS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35069CO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35096EN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35105ZB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35283JZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35484EX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35805TC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36020VB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36115SK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36191EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36200ZL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36223VW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36404TW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36443XA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36498HE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36542BE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G36669SS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36774NW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36777IJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36990MI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37492BZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G37626KE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38121JC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38189CI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38351JR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38373BD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38395YJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38407OC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G38421BP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38465NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38542FY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38625SV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38933BS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39098FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39147LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39174FJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G39189IR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39298RF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G39342SG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39377DE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39377JQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39439UR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39735TI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39760IQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39993XV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40026ZO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40064GR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40095NL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40193LX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40482NA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40641DI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40707SF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40709XS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40799GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40813TL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G40922OB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41310VR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41912CL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41953RN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42011NE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42013HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42028DN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42206TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42233WE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G42239FO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42240DE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42650PV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42667BL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42668PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42712XS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42818YG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43048HN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43088GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43204BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43426MU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43438SM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43473VD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43556OK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43649OO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43873BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43946PN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43981RC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G43993DD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44304NG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44451GP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44618FI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44886WZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44904UE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44965BC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G45000ZN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G45262QY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G45332CP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G45408DN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G45579UD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G45718WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46039GY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46124PS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G46407AA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G46712PI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G46723DZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47043LK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47065QM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47152AG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47164CZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47286YR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47384NK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47459CP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47537XW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47554EG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47766VH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47847UW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47859DD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G47892HA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47913QC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47921ZO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G48329CR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48519QN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G48757CJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48851YP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49228QV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49322HB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49353WO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G49394FL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49502SC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49542DJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49668VU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49701HE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49984EZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50068TE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G50192TG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G50198YU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50258QB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50427EN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50474FI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50518XT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50549VU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50706US", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50802FP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G50842FY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50880EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50932PM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51080VE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51086FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G51162XR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51212OK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51333KM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51710QD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52121AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52225DV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52236XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52522DG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52608IK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52814NP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52892AY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53266MQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53342MA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G53795OV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G53858MF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53878DC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53996MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G54043EU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54198RS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54273JA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54273KX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54334WY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54458VQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G55104BW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G55156EU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55360NR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55481KF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55781KV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55861FV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55986UN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56095ZZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56163DR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56265BA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56418NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56492TA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56529CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56675EV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G56676FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56720TK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56734EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56737NO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56893CG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G56920BC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56988MG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G57166CI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57184TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57247BR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G57591KJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G57675TR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57857CB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57941UT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58473KL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58516UP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58537BJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58580BP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58631QJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58692HO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58839SI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58890ZT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59159PE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59300GC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59392WK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59659CN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59740UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59746QC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G59747EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59804FF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59881OG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59897WN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60059YM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60167HP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G60190AL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60233QP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60282OI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60673DJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60692DB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G60704KF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60725IW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G60926LS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60929YB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60977LC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61072JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61155XS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61358KS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61411XJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61929YU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62218ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62349ZP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62428XG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62488UG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62798PI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63100CN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63125IE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63158IX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63317CA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63427CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63474NY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63617UP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63665MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G63946SF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64538ZR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G64613CO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64633BH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G64849QZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64904FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64945YR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G64950NP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G65084YX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G65135MY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65302CF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G65351EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65799WV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G65852GY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65867II", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G65968OK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66184ZO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66193EV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G66301VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66422NV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66689PB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G66932MV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66977DX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67223RN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67235NM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67265VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67354ZM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67405DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67536FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G67549HD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67760NX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G68281CW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G68290RT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68306RK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68313WI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G68528OI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G68563JG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68774DG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G68903PJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G69033GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69083KH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G69103XG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G69175BJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G69281GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69332GG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G69533GA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G69585DZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G69731BT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G69883FT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G69940PT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70590VH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G70684QL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71057CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71360BB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71690HK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72080JO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G72263VV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G72281FQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72317JJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G72334XM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72353NN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72356TB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72369ZI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72734AU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72893LL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G72900AG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73560HZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G73582RP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73678PC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G73687MV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G73869CT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G73991ZU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74130TT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G74497TS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G74701OU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74793LO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74814JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75097MF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G75192PM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G75462ID", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G75549SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75564FK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G75757LG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G75853FN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G75985RP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G75999PF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76036GS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76195PM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G76326JS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G76370WH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76373XZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G76465IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76489QB", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G76515LR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G76844PH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77097TR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77194JD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G77439WS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G77670FL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77791EJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77812EW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G78106KK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78126EU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G78129VV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G79011EQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79039LV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79084MU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G79089IH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G79254LX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79309CF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G79348ZY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G79520GQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G79600DE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G79798AT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G80047AR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80060TZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80264ZA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80566CZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80643JD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80661IW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80764EX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80825SQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81082JG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81112MA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81128IY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81221QB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G81247WU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81294ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81328FA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81333SO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81604KV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81617NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G81628EZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81676AR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81738MQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82130LG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82169SQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82195FD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82195SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82285OB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82417CI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82420SH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G82572FN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82761BO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G82841UV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82970CD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G83029ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83155KW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83635VI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G83642WS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G83738AG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G83952ID", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84332AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84374OK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G84536BM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G84646MS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84647SC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84753IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84874EV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85046IS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85101OA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85319UV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85545IG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85734JO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G85736BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86002IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86030CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G86117ZB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G86309VR", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G86533KK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86718LZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G86730KO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G86737YW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G87247VU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G87457SB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G87470OA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87623VS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88266ZO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88468EP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89009CR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89026DU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89136NX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89597IJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89658RO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89736EE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90000WS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90052RE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90423CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90575VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90672BM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G90755RV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90767ZX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91005JW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91031XA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91038CM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91164NP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91203RO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91303IT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91409SX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G91756JQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G92055NH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G92092UI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G92127GC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92147YE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G92594CB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G92627GM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G92776RR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G93145AF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G93213IL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93282XR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G93553MJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G93597FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93791KT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G93824CM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G93839ET", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G93858FG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G93986UQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G94053XX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G94163JZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G94180RN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G94225QI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G94541XJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G94667GT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G94854QH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95108DW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G95213DW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G95233RZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G95304AA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G95397YW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G95423TN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G95430GC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G95462VZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G95536UW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G95598TW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G95648NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95910WJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G95989NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G96113SZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G96176PI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G96336FY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96417PJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G96425TB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96508BN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G96578LW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G96656FL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G96738MG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G96841SQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G96852FA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G96925LL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G97318BO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G97453GF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G97473TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97585KM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97793RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97841LZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97852WM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97964WC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G98284QO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G98369DU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G98437LC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98490BN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G98538FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G98647BZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G98671GW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G98683EN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G98712QJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G98753FD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G98862GW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G98894JN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99117SF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99306JE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G99866WK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99954GW", "type": "N-linked", "subtype": "Core-fucosylated" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 119, "end_pos": 121 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 226, "end_pos": 228 }, { "start_pos": 75, "end_pos": 77 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAB4-1", "uniprot_ac": "F1SAB4", "uniprot_id": "F1SAB4_PIG", "mass": { "chemical_mass": 53590.0, "monoisotopic_mass": 53590.0 }, "refseq": { "ac": "XP_013845129", "name": "probable glutamate--tRNA ligase, mitochondrial isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013845129" }, "gene_names": [ { "name": "EARS2", "type": "recommended", "evidence": [ { "id": "F1SAB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ] }, { "name": "EARS2", "type": "synonym", "evidence": [ { "id": "XP_013845129", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013845129" } ] } ], "protein_names": [ { "name": "Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SAB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB4/entry#names_and_taxonomy" } ] }, { "name": "6.1.1.17", "type": "synonym", "evidence": [ { "id": "F1SAB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB4/entry#names_and_taxonomy" } ] }, { "name": "6.1.1.24", "type": "synonym", "evidence": [ { "id": "F1SAB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB4/entry#names_and_taxonomy" } ] }, { "name": "Glutamate--tRNA(Gln) ligase EARS2, mitochondrial", "type": "synonym", "evidence": [ { "id": "F1SAB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB4/entry#names_and_taxonomy" } ] }, { "name": "Glutamyl-tRNA synthetase", "type": "synonym", "evidence": [ { "id": "F1SAB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB4/entry#names_and_taxonomy" } ] }, { "name": "Mitochondrial glutamyl-tRNA synthetase", "type": "synonym", "evidence": [ { "id": "F1SAB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB4/entry#names_and_taxonomy" } ] }, { "name": "probable glutamate--tRNA ligase, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013845129", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013845129" } ] } ], "function": [ { "annotation": "Non-discriminating glutamyl-tRNA synthetase that catalyzes aminoacylation of both mitochondrial tRNA(Glu) and tRNA(Gln) and participates in RNA aminoacylation for mitochondrial protein translation. Attachs glutamate to tRNA(Glu) or tRNA(Gln) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) or tRNA(Gln). In vitro, cytoplasmic tRNA(Gln) is slightly glutamylated, but with low activity.", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4#function" }, { "database": "UniProtKB", "id": "ARBA00059125", "url": "https://www.uniprot.org/uniprotkb/ARBA00059125#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EARS2", "url": "https://www.uniprot.org/uniprotkb/F1SAB4", "locus": { "chromosome": "3", "start_pos": 22684241, "end_pos": 22657766, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010797", "url": "https://www.ensembl.org/id/ENSSSCG00000010797" } ] } } ], "crossref": [ { "id": "F1SAB4", "url": "https://alphafold.ebi.ac.uk/entry/F1SAB4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010797", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010797", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00808", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00808", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523812", "url": "https://www.ncbi.nlm.nih.gov/gene/100523812", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000924", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000924", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008925", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008925", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SAB4", "url": "https://www.orthodb.org/?gene=F1SAB4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43311", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43311", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43311:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43311:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00749", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00749", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19269", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19269", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013845129", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013845129", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "18397", "url": "https://www.rhea-db.org/rhea/18397", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "23540", "url": "https://www.rhea-db.org/rhea/23540", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "64612", "url": "https://www.rhea-db.org/rhea/64612", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTGFLHLGGLRTALYNYIFAKKHGGSFILRLEDTDQTRLVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYLQSQRLALYAQATEALLKSGAAYPCFCSPQRLELLKREALRNHQTPRYDNRCRTLSQAQVAQKLAKDPTPAIRFRLEGEAPAFQDLVYGWNRHEVASVEGDPVILKSDGFPTYHLACVVDDHHMGVSHVLRGSEWLVSTSKHLLLYQALGWQPPRFAHLPLLLNKDGSKLSKRQGDIFLEHFAATGFLPDALLDIITNCGSGFAENQMGRTLPELIAQFNLARITCHSALLDLEKLPEFNRLHLRRLVSDETERRQLVGKLQALVEEAFGSQLQDRHVLDPAYVERIVLLRQGHISRLQDLVSPAHSYLWTRPAVGRAQLGAISEKVEVIAKRVLGLLEGPGTNLTQDVLNRELKKLSEGLEGTKHSHVMKLLRMALSGQLQGPPVAEMMVSLGPEEVRERIQKVLAT", "length": 480, "header": "tr|F1SAB4-1|F1SAB4_PIG Isoform 1 of Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial OS=Sus scrofa OX=9823 GN=EARS2 PE=3 SV=2 CANONICAL=F1SAB4-1" }, "isoforms": [ { "isoform_ac": "F1SAB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAB4/entry#F1SAB4-1", "sequence": { "sequence": "MRTGFLHLGGLRTALYNYIFAKKHGGSFILRLEDTDQTRLVPGAAENIEDMLEWAGIPPDESPRRGGPAGPYLQSQRLALYAQATEALLKSGAAYPCFCSPQRLELLKREALRNHQTPRYDNRCRTLSQAQVAQKLAKDPTPAIRFRLEGEAPAFQDLVYGWNRHEVASVEGDPVILKSDGFPTYHLACVVDDHHMGVSHVLRGSEWLVSTSKHLLLYQALGWQPPRFAHLPLLLNKDGSKLSKRQGDIFLEHFAATGFLPDALLDIITNCGSGFAENQMGRTLPELIAQFNLARITCHSALLDLEKLPEFNRLHLRRLVSDETERRQLVGKLQALVEEAFGSQLQDRHVLDPAYVERIVLLRQGHISRLQDLVSPAHSYLWTRPAVGRAQLGAISEKVEVIAKRVLGLLEGPGTNLTQDVLNRELKKLSEGLEGTKHSHVMKLLRMALSGQLQGPPVAEMMVSLGPEEVRERIQKVLAT", "length": 480, "header": "tr|F1SAB4-1|F1SAB4_PIG Isoform 1 of Nondiscriminating glutamyl-tRNA synthetase EARS2, mitochondrial OS=Sus scrofa OX=9823 GN=EARS2 PE=3 SV=2 CANONICAL=F1SAB4-1" }, "locus": { "chromosome": "3", "start_pos": 22682293, "end_pos": 22657801, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011813.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011813.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011510.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011510.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 141, "start_aa": "Thr", "end_pos": 141, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr141", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "pmid": "" }, { "name": "glutamate-tRNA ligase activity", "id": "GO:0004818", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004818", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "pmid": "" }, { "name": "glutamate-tRNA(Gln) ligase activity", "id": "GO:0050561", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050561", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "glutamyl-tRNA aminoacylation", "id": "GO:0006424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006424", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "pmid": "" }, { "name": "tRNA aminoacylation for mitochondrial protein translation", "id": "GO:0070127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070127", "evidence": [ { "database": "UniProtKB", "id": "F1SAB4", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 416, "end_pos": 418, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "18397", "name": "", "equation": "tRNA(Glx) + L-glutamate + ATP = L-glutamyl-tRNA(Glx) + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "18397", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/18397" } ] }, { "id": "23540", "name": "", "equation": "tRNA(Glu) + L-glutamate + ATP = L-glutamyl-tRNA(Glu) + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "23540", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/23540" } ] }, { "id": "64612", "name": "", "equation": "tRNA(Gln) + L-glutamate + ATP = L-glutamyl-tRNA(Gln) + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "64612", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/64612" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAB4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 480, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAB4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAB4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" }, { "id": "PF19269", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19269" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminoacyl-tRNA synthetase class I anticodon-binding", "eco_id": "ECO_0000259", "start_pos": 345, "end_pos": 478, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SAB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAB4" }, { "id": "PF00749", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00749" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glutamyl/glutaminyl-tRNA synthetase class Ib catalytic", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 308, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 141 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 416, "end_pos": 418 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAC4-1", "uniprot_ac": "F1SAC4", "uniprot_id": "F1SAC4_PIG", "mass": { "chemical_mass": 111444.0, "monoisotopic_mass": 111444.0 }, "refseq": {}, "gene_names": [ { "name": "SCART1", "type": "recommended", "evidence": [ { "id": "F1SAC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" } ] } ], "protein_names": [ { "name": "Scavenger receptor family member expressed on T cells 1", "type": "synonym", "evidence": [ { "id": "F1SAC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAC4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "After shedding, the soluble form (sCD163) may play an anti-inflammatory role.", "evidence": [ { "database": "UniProtKB", "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4#function" }, { "database": "UniProtKB", "id": "ARBA00057499", "url": "https://www.uniprot.org/uniprotkb/ARBA00057499#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCART1", "url": "https://www.uniprot.org/uniprotkb/F1SAC4", "locus": { "chromosome": "14", "start_pos": 141457631, "end_pos": 141445314, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010787", "url": "https://www.ensembl.org/id/ENSSSCG00000010787" } ] } } ], "crossref": [ { "id": "F1SAC4", "url": "https://alphafold.ebi.ac.uk/entry/F1SAC4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010787", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010787", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SAC4", "url": "https://www.orthodb.org/?gene=F1SAC4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19331", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19331", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19331:SF458", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19331:SF458", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAC4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAALWTLGLGILLPAVRALPGGGPSDLRLAYRHSPCDGVVLVRHEGEWGHVCNQEWTLKEASVVCRQLGCGQAVGAPKYVPLSGEVVRPWLHNVSCRGDEASLWGCSLGAWTQSQCPHEWVVVALCSNGTFREVRLVKGRSPCAGLPEIRNVNGVDRLCGLHQEEATVFCRELGCGPALQASRQGEGVAGKYMTCRGTEQTIRNCRLNNNLRKGCDFQQDAQVVCSGHMEARLAGGEHPCAGRLEVRRGLTWGTICDADLDLATAHVVCRELQCGMAVSTPQDAHFGQGSGPVWTEAFRCTGNESLLFHCPRRPGHQCGHSQDAGLRCSEFRLVNGSSACEGRVELQVQGRWAPVCAAHWDLTDATVLCQQLNCGNAVATRPGGHFGDGDAGIWPDAFHCVGTEPYLWNCPVSTLGAPACARGNAATAVCSGLPHALRLRDGQSRCDGRVEVSLDGVWGRVLDDAWDLRGAGVVCRQLGCGEAERAYEAPAPGRGAVPLGLSRARCLGTETRLTQCNVSLSPLVPEEESRDAGVVCAGSLRVRLASGPGRCAGRVEVLHQGVWGTVCDDGWDLRDAHVVCEQLGCGHALSAPGAAHFGAGAGRIWMDELGCEGHESALWRCPSGGWGLHDCGHKEDAGVFCSGSVALRLRGGSGRCAGWLDVFYNGTWGAVCSNALRDTSLSIICEQLGCGGQGWLENRPVHTSLGTSWVDNIQCRRLRNTTLWQCPSAPWHPRSCARGEEVWLTCAGVSEKTTQDPRQTFNCSSTDSCPEEGALRVRGGEDRCSGRVELWHAGSWGTVCDDSWDLADAEVVCRQLGCGRAVGALVGAAFGPGSGPVWLDEVGCRGSEASLWGCPAEPWGLGDCGHKEDAGVRCSGDWGTTVLPSLSGSPLALQPAHQAGTLPVTLCLVLGTLLTVISLALGARWLRGRGACRGSGTLGNLPSEGVYEDIGVVPLGDKDEGLRASGAPVLEEEYDDAEEPRLDPEEGEAEEGPPALCRWGSSQLRLGRKITAASAPGRADHEPTPGTSTRPEGGGEPSGPGLSFSSILQEI", "length": 1052, "header": "tr|F1SAC4-1|F1SAC4_PIG Isoform 1 of Scavenger receptor family member expressed on T cells 1 OS=Sus scrofa OX=9823 GN=SCART1 PE=4 SV=3 CANONICAL=F1SAC4-1" }, "isoforms": [ { "isoform_ac": "F1SAC4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAC4/entry#F1SAC4-1", "sequence": { "sequence": "MRAALWTLGLGILLPAVRALPGGGPSDLRLAYRHSPCDGVVLVRHEGEWGHVCNQEWTLKEASVVCRQLGCGQAVGAPKYVPLSGEVVRPWLHNVSCRGDEASLWGCSLGAWTQSQCPHEWVVVALCSNGTFREVRLVKGRSPCAGLPEIRNVNGVDRLCGLHQEEATVFCRELGCGPALQASRQGEGVAGKYMTCRGTEQTIRNCRLNNNLRKGCDFQQDAQVVCSGHMEARLAGGEHPCAGRLEVRRGLTWGTICDADLDLATAHVVCRELQCGMAVSTPQDAHFGQGSGPVWTEAFRCTGNESLLFHCPRRPGHQCGHSQDAGLRCSEFRLVNGSSACEGRVELQVQGRWAPVCAAHWDLTDATVLCQQLNCGNAVATRPGGHFGDGDAGIWPDAFHCVGTEPYLWNCPVSTLGAPACARGNAATAVCSGLPHALRLRDGQSRCDGRVEVSLDGVWGRVLDDAWDLRGAGVVCRQLGCGEAERAYEAPAPGRGAVPLGLSRARCLGTETRLTQCNVSLSPLVPEEESRDAGVVCAGSLRVRLASGPGRCAGRVEVLHQGVWGTVCDDGWDLRDAHVVCEQLGCGHALSAPGAAHFGAGAGRIWMDELGCEGHESALWRCPSGGWGLHDCGHKEDAGVFCSGSVALRLRGGSGRCAGWLDVFYNGTWGAVCSNALRDTSLSIICEQLGCGGQGWLENRPVHTSLGTSWVDNIQCRRLRNTTLWQCPSAPWHPRSCARGEEVWLTCAGVSEKTTQDPRQTFNCSSTDSCPEEGALRVRGGEDRCSGRVELWHAGSWGTVCDDSWDLADAEVVCRQLGCGRAVGALVGAAFGPGSGPVWLDEVGCRGSEASLWGCPAEPWGLGDCGHKEDAGVRCSGDWGTTVLPSLSGSPLALQPAHQAGTLPVTLCLVLGTLLTVISLALGARWLRGRGACRGSGTLGNLPSEGVYEDIGVVPLGDKDEGLRASGAPVLEEEYDDAEEPRLDPEEGEAEEGPPALCRWGSSQLRLGRKITAASAPGRADHEPTPGTSTRPEGGGEPSGPGLSFSSILQEI", "length": 1052, "header": "tr|F1SAC4-1|F1SAC4_PIG Isoform 1 of Scavenger receptor family member expressed on T cells 1 OS=Sus scrofa OX=9823 GN=SCART1 PE=4 SV=3 CANONICAL=F1SAC4-1" }, "locus": { "chromosome": "14", "start_pos": 141455945, "end_pos": 141445361, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011803.3", "url": "https://www.ensembl.org/id/ENSSSCT00000011803.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011500.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011500.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "scavenger receptor activity", "id": "GO:0005044", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005044", "evidence": [ { "database": "UniProtKB", "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" } ], "pmid": "" }, { "name": "brush border", "id": "GO:0005903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005903", "evidence": [ { "database": "UniProtKB", "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "gamma-delta T cell lineage commitment", "id": "GO:0002365", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002365", "evidence": [ { "database": "UniProtKB", "id": "F1SAC4", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 336, "end_pos": 338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" }, { "start_pos": 666, "end_pos": 668, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 763, "end_pos": 765, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAC4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1052, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAC4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAC4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAC4" }, { "id": "PS50287", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50287" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SRCR", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 128, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 304, "end_pos": 306 }, { "start_pos": 336, "end_pos": 338 }, { "start_pos": 518, "end_pos": 520 }, { "start_pos": 666, "end_pos": 668 }, { "start_pos": 721, "end_pos": 723 }, { "start_pos": 763, "end_pos": 765 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAC9-1", "uniprot_ac": "F1SAC9", "uniprot_id": "F1SAC9_PIG", "mass": { "chemical_mass": 40957.0, "monoisotopic_mass": 40957.0 }, "refseq": { "ac": "XP_020919259", "name": "olfactory receptor 2A1/2A42-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919259" }, "gene_names": [ { "name": "LOC100525417", "type": "synonym", "evidence": [ { "id": "XP_020919259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919259" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SAC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAC9/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 2A1/2A42-like", "type": "synonym", "evidence": [ { "id": "XP_020919259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919259" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SAC9", "url": "https://www.uniprot.org/uniprotkb/F1SAC9#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAC9", "url": "https://www.uniprot.org/uniprotkb/F1SAC9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SAC9", "locus": {} } ], "crossref": [ { "id": "F1SAC9", "url": "https://alphafold.ebi.ac.uk/entry/F1SAC9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15420", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15420", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525417", "url": "https://www.ncbi.nlm.nih.gov/gene/100525417", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525417", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525417", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAC9", "url": "https://www.orthodb.org/?gene=F1SAC9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020919259", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919259", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAC9", "url": "https://www.uniprot.org/uniprotkb/F1SAC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVPLPKKSKNNNNNNKLINFKKAVFIKEGLDVFKSSVLSYPFYVFHSEMGENQTMVTEFILLGFPLNPRIQLFLFGLFFLCYAFTLLGNGVILGLISLDSRLHTPMYFFLSHLAIVDVAYACNTVPQMLINLLSPTKPISFTGCMTQTFLFLSFAHTECLLLVVMSYDRYVAICHPLRYSAIMSWRLCFILVVTSWACGSLLALVHVVLILRLPFCGPREINHFFCEILAVLKLACADTWLNQVVIFAACMFILVGPLCLVLVSYTHILFAILGIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYIAPNSHHPQEQQKVLFLFYSLFNPMLNPLIYSLRNAEVKGALRRAVFKERHFQLE", "length": 362, "header": "tr|F1SAC9-1|F1SAC9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SAC9-1" }, "isoforms": [ { "isoform_ac": "F1SAC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAC9/entry#F1SAC9-1", "sequence": { "sequence": "MGVPLPKKSKNNNNNNKLINFKKAVFIKEGLDVFKSSVLSYPFYVFHSEMGENQTMVTEFILLGFPLNPRIQLFLFGLFFLCYAFTLLGNGVILGLISLDSRLHTPMYFFLSHLAIVDVAYACNTVPQMLINLLSPTKPISFTGCMTQTFLFLSFAHTECLLLVVMSYDRYVAICHPLRYSAIMSWRLCFILVVTSWACGSLLALVHVVLILRLPFCGPREINHFFCEILAVLKLACADTWLNQVVIFAACMFILVGPLCLVLVSYTHILFAILGIQSGEGRRKAFSTCSSHLCVVGLFFGSAIVMYIAPNSHHPQEQQKVLFLFYSLFNPMLNPLIYSLRNAEVKGALRRAVFKERHFQLE", "length": 362, "header": "tr|F1SAC9-1|F1SAC9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SAC9-1" }, "locus": { "chromosome": "9", "start_pos": 113419757, "end_pos": 113418672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016846.3", "url": "https://www.ensembl.org/id/ENSSSCT00000016846.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016395.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016395.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAC9", "url": "https://www.uniprot.org/uniprotkb/F1SAC9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525417", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525417", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SAC9", "url": "https://www.uniprot.org/uniprotkb/F1SAC9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SAC9", "url": "https://www.uniprot.org/uniprotkb/F1SAC9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAC9", "url": "https://www.uniprot.org/uniprotkb/F1SAC9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SAC9", "url": "https://www.uniprot.org/uniprotkb/F1SAC9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAC9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 362, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAC9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAC9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAC9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 338, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAE4-1", "uniprot_ac": "F1SAE4", "uniprot_id": "F1SAE4_PIG", "mass": { "chemical_mass": 61892.0, "monoisotopic_mass": 61892.0 }, "refseq": {}, "gene_names": [ { "name": "NME8", "type": "recommended", "evidence": [ { "id": "F1SAE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ] } ], "protein_names": [ { "name": "Protein NME8", "type": "recommended", "evidence": [ { "id": "F1SAE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE4/entry#names_and_taxonomy" } ] }, { "name": "NME/NM23 family member 8", "type": "synonym", "evidence": [ { "id": "F1SAE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE4/entry#names_and_taxonomy" } ] }, { "name": "Nucleoside diphosphate kinase 8", "type": "synonym", "evidence": [ { "id": "F1SAE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE4/entry#names_and_taxonomy" } ] }, { "name": "Protein kinase NME8", "type": "synonym", "evidence": [ { "id": "F1SAE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE4/entry#names_and_taxonomy" } ] }, { "name": "Putative 3'-5'-DNA exonuclease NDK8", "type": "synonym", "evidence": [ { "id": "F1SAE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE4/entry#names_and_taxonomy" } ] }, { "name": "Spermatid-specific thioredoxin-2", "type": "synonym", "evidence": [ { "id": "F1SAE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE4/entry#names_and_taxonomy" } ] }, { "name": "Thioredoxin domain-containing protein 3", "type": "synonym", "evidence": [ { "id": "F1SAE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Possesses an intrinsic kinase activity. In vitro, does not exhibit nucleoside diphosphate kinase (NDPK) activity or disulfide bond-reducing activity. Additionally, exhibits a 3'-5'-DNA exonuclease activity that removes single nucleotides from the 3' terminus of single-stranded DNA substrates and digests overhanging mismatched 3' termini from double-stranded DNA substrates, suggesting a role in DNA nucleolytic processing. May be required during the final stages of sperm tail maturation in the testis and/or epididymis, where extensive disulfide bonding of fibrous sheath (FS) proteins occurs.", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4#function" }, { "database": "UniProtKB", "id": "ARBA00094152", "url": "https://www.uniprot.org/uniprotkb/ARBA00094152#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NME8", "url": "https://www.uniprot.org/uniprotkb/F1SAE4", "locus": { "chromosome": "9", "start_pos": 108392781, "end_pos": 108358535, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015448", "url": "https://www.ensembl.org/id/ENSSSCG00000015448" } ] } } ], "crossref": [ { "id": "F1SAE4", "url": "https://alphafold.ebi.ac.uk/entry/F1SAE4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015448", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015448", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02948", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02948", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04416", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04416", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46135", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46135", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46135:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46135:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00085", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00334", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00334", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAE4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGKKRELQLQAVIDNQSLWDEMLQNKGLTVIDVYQAWCGPCKAMQTLFRKLKNELNEDEMLHFAVAEADSIVTLQSFRDKCEPLFLFSVNGKIIAKIKGANAPLVNQKVITLINEERKIAAGEMVRPQYHEVALVDSDSEDAGETGYENVDELYSIVIINPDAVNARKVLEIKDKIINTQFVIEAEDKRLLTAEQVRYFYSQKADEPDFEDFVSFMTSGLSYILVISQKKEKEPPQDESEANSETEARETWDDQQEGQVRGMKHKQDSLQEYMRRQHLSQFCDVEENITNTTLIDIFFPDFKIMKGIKLEKILALLRPDLFHEKKEDVLNIIQDEGFKIMMQRQIVLSEEEAQTLCKEYENKDYFENLIKNMTSGPSLALVLLRDNCLMHWKQLIGPSTVEEAREHLPESLCIRFAMESSPINQLYGSDSLEAAEREIQHFFPPQHTVALIKPHVSPEQRGPSLVMILTKWNAVLDWRRLMGPTDPEEARLLSPNSVRAQYGRNILRNAVHGASNTLEAMETINKMFEGFLAENPEEN", "length": 539, "header": "tr|F1SAE4-1|F1SAE4_PIG Isoform 1 of Protein NME8 OS=Sus scrofa OX=9823 GN=NME8 PE=3 SV=5 CANONICAL=F1SAE4-1" }, "isoforms": [ { "isoform_ac": "F1SAE4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAE4/entry#F1SAE4-1", "sequence": { "sequence": "MAGKKRELQLQAVIDNQSLWDEMLQNKGLTVIDVYQAWCGPCKAMQTLFRKLKNELNEDEMLHFAVAEADSIVTLQSFRDKCEPLFLFSVNGKIIAKIKGANAPLVNQKVITLINEERKIAAGEMVRPQYHEVALVDSDSEDAGETGYENVDELYSIVIINPDAVNARKVLEIKDKIINTQFVIEAEDKRLLTAEQVRYFYSQKADEPDFEDFVSFMTSGLSYILVISQKKEKEPPQDESEANSETEARETWDDQQEGQVRGMKHKQDSLQEYMRRQHLSQFCDVEENITNTTLIDIFFPDFKIMKGIKLEKILALLRPDLFHEKKEDVLNIIQDEGFKIMMQRQIVLSEEEAQTLCKEYENKDYFENLIKNMTSGPSLALVLLRDNCLMHWKQLIGPSTVEEAREHLPESLCIRFAMESSPINQLYGSDSLEAAEREIQHFFPPQHTVALIKPHVSPEQRGPSLVMILTKWNAVLDWRRLMGPTDPEEARLLSPNSVRAQYGRNILRNAVHGASNTLEAMETINKMFEGFLAENPEEN", "length": 539, "header": "tr|F1SAE4-1|F1SAE4_PIG Isoform 1 of Protein NME8 OS=Sus scrofa OX=9823 GN=NME8 PE=3 SV=5 CANONICAL=F1SAE4-1" }, "locus": { "chromosome": "9", "start_pos": 108392778, "end_pos": 108358771, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016830.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016830.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016380.5", "url": "https://www.ensembl.org/id/ENSSSCP00000016380.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "3'-5'-DNA exonuclease activity", "id": "GO:0008296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008296", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "sperm cytoplasmic droplet", "id": "GO:0097598", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097598", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "outer dynein arm", "id": "GO:0036157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036157", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" }, { "name": "DNA catabolic process", "id": "GO:0006308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006308", "evidence": [ { "database": "UniProtKB", "id": "F1SAE4", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAE4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 539, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAE4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAE4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE4" }, { "id": "PS51352", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51352" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioredoxin", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 119, "start_aa": "Met", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 }, { "start_pos": 288, "end_pos": 290 }, { "start_pos": 291, "end_pos": 293 }, { "start_pos": 372, "end_pos": 374 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAE7-1", "uniprot_ac": "F1SAE7", "uniprot_id": "F1SAE7_PIG", "mass": { "chemical_mass": 88837.0, "monoisotopic_mass": 88837.0 }, "refseq": { "ac": "XP_020919230", "name": "calcium-independent phospholipase A2-gamma isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919230" }, "gene_names": [ { "name": "PNPLA8", "type": "recommended", "evidence": [ { "id": "F1SAE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ] }, { "name": "PNPLA8", "type": "synonym", "evidence": [ { "id": "XP_020919230", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919230" } ] } ], "protein_names": [ { "name": "Calcium-independent phospholipase A2-gamma", "type": "recommended", "evidence": [ { "id": "F1SAE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE7/entry#names_and_taxonomy" } ] }, { "name": "3.1.1.5", "type": "synonym", "evidence": [ { "id": "F1SAE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE7/entry#names_and_taxonomy" } ] }, { "name": "Intracellular membrane-associated calcium-independent phospholipase A2 gamma", "type": "synonym", "evidence": [ { "id": "F1SAE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE7/entry#names_and_taxonomy" } ] }, { "name": "Patatin-like phospholipase domain-containing protein 8", "type": "synonym", "evidence": [ { "id": "F1SAE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE7/entry#names_and_taxonomy" } ] }, { "name": "calcium-independent phospholipase A2-gamma isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020919230", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919230" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PNPLA8", "url": "https://www.uniprot.org/uniprotkb/F1SAE7", "locus": { "chromosome": "9", "start_pos": 108269830, "end_pos": 108320267, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015446", "url": "https://www.ensembl.org/id/ENSSSCG00000015446" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015446", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015446", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07211", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07211", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521328", "url": "https://www.ncbi.nlm.nih.gov/gene/100521328", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045217", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045217", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521328", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521328", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HMSRIKN", "url": "https://omabrowser.org/oma/group/HMSRIKN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24185", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24185", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24185:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24185:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1482788", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482788", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482839", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020919230", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919230", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "15177", "url": "https://www.rhea-db.org/rhea/15177", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "15801", "url": "https://www.rhea-db.org/rhea/15801", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "18689", "url": "https://www.rhea-db.org/rhea/18689", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "38779", "url": "https://www.rhea-db.org/rhea/38779", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40427", "url": "https://www.rhea-db.org/rhea/40427", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40431", "url": "https://www.rhea-db.org/rhea/40431", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40571", "url": "https://www.rhea-db.org/rhea/40571", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40579", "url": "https://www.rhea-db.org/rhea/40579", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40639", "url": "https://www.rhea-db.org/rhea/40639", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40643", "url": "https://www.rhea-db.org/rhea/40643", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40647", "url": "https://www.rhea-db.org/rhea/40647", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40651", "url": "https://www.rhea-db.org/rhea/40651", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40811", "url": "https://www.rhea-db.org/rhea/40811", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40819", "url": "https://www.rhea-db.org/rhea/40819", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40823", "url": "https://www.rhea-db.org/rhea/40823", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41063", "url": "https://www.rhea-db.org/rhea/41063", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "44068", "url": "https://www.rhea-db.org/rhea/44068", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "44604", "url": "https://www.rhea-db.org/rhea/44604", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "52812", "url": "https://www.rhea-db.org/rhea/52812", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "67156", "url": "https://www.rhea-db.org/rhea/67156", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "67272", "url": "https://www.rhea-db.org/rhea/67272", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAE6", "url": "https://www.uniprot.org/uniprotkb/F1SAE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAE6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAE7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAE7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSIHLTIDLYYIYLLSNARSLCGKQRSKELHFLCSPKHYWRISHISLQRGFHTSKIRWKWTKSEAHSRSKHYYSPSNHGVHIGILHLSTSAPKGLTKVSLRMSRIKSTLNSVSKAVWGKQNEMISRLAQLKPSSRILRKVSDGGWLKQRNVKQTIKFLKKYSDTSAEKSSFPAKDNHMLEKEDTGKKSLFHYASSLTTKFEESFYFLSNHINSYFKCEEKMPQKQESKHSQDKSELELKKVEEEKPSSLDANVLTDKQQGSEAVCALDKPASPSETPEVLRVSTKQCIANFFSRPTEGVQALVGGYIGGLVPKLKYEAKSQSEEQEEVLKAEQAVSGDRSTEEKRRLSLQREKIIARVSIDNRTRALVQALRRTADPRLCITRVEELTFHLLEFPEGKGVAVREKIIPYLLRLRQIKDETLQAAVREILALIGYVDPVKGRGIRILSIDGGGIRGVVALQTLRKLVELTQKPVHQLFDYICGVSTGAILAFMLGLFHMPLDECEELYRKLGSDVFSQNVIVGTVKMSWSHAFYDSQTWENILKDRMGSSLMIETARNPTCPKVAAVSTIVNRGITPKAFVFRNYGHFPGVNSHYLGGCHYKMWQAIRASSAAPGYFAEYALGNDLHQDGGLLLNNPSALAMHECKCLWPDVPLECIVSLGTGRYESDVRNTTTYTSLKTKLSNVINSATDTEEVHVMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLNQLQLEGLKYIERNEEKMKKLAKILSQEKTTLQKINDWIKLKTDMYEGLPFFSKL", "length": 783, "header": "tr|F1SAE7-1|F1SAE7_PIG Isoform 1 of Calcium-independent phospholipase A2-gamma OS=Sus scrofa OX=9823 GN=PNPLA8 PE=4 SV=3 CANONICAL=F1SAE7-1" }, "isoforms": [ { "isoform_ac": "F1SAE6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAE7/entry#F1SAE6-1", "sequence": { "sequence": "MSRIKSTLNSVSKAVWGKQNEMISRLAQLKPSSRILRKVSDGGWLKQRNVKQTIKFLKKYSDTSAEKSSFPAKDNHMLEKEDTGKKSLFHYASSLTTKFEESFYFLSNHINSYFKCEEKMPQKQESKHSQDKSELELKKVEEEKPSSLDANVLTDKQQGSEAVCALDKPASPSETPEVLRVSTKQCIANFFSRPTEGVQALVGGYIGGLVPKLKYEAKSQSEEQEEVLKAEQAVSGDRSTEEKRRLSLQREKIIARVSIDNRTRALVQALRRTADPRLCITRVEELTFHLLEFPEGKGVAVREKIIPYLLRLRQIKDETLQAAVREILALIGYVDPVKGRGIRILSIDGGGIRGVVALQTLRKLVELTQKPVHQLFDYICGVSTGAILAFMLGLFHMPLDECEELYRKLGSDVFSQNVIVGTVKMSWSHAFYDSQTWENILKDRMGSSLMIETARNPTCPKVAAVSTIVNRGITPKAFVFRNYGHFPGVNSHYLGGCHYKMWQAIRASSAAPGYFAEYALGNDLHQDGGLLLNNPSALAMHECKCLWPDVPLECIVSLGTGRYESDVRNTTTYTSLKTKLSNVINSATDTEEVHVMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLNQLQLEGLKYIERNEEKMKKLAKILSQEKTTLQKINDWIKLKTDMYEGLPFFSKL", "length": 682, "header": "tr|F1SAE6-1|F1SAE7_PIG Computationally mapped isoform of Calcium-independent phospholipase A2-gamma OS=Sus scrofa OX=9823 GN=PNPLA8 PE=4 SV=4 CANONICAL=F1SAE7-1" }, "locus": { "chromosome": "9", "start_pos": 108311192, "end_pos": 108272158, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016828.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016828.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016378.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016378.4" } ] } }, { "isoform_ac": "F1SAE7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAE7/entry#F1SAE7-1", "sequence": { "sequence": "MSIHLTIDLYYIYLLSNARSLCGKQRSKELHFLCSPKHYWRISHISLQRGFHTSKIRWKWTKSEAHSRSKHYYSPSNHGVHIGILHLSTSAPKGLTKVSLRMSRIKSTLNSVSKAVWGKQNEMISRLAQLKPSSRILRKVSDGGWLKQRNVKQTIKFLKKYSDTSAEKSSFPAKDNHMLEKEDTGKKSLFHYASSLTTKFEESFYFLSNHINSYFKCEEKMPQKQESKHSQDKSELELKKVEEEKPSSLDANVLTDKQQGSEAVCALDKPASPSETPEVLRVSTKQCIANFFSRPTEGVQALVGGYIGGLVPKLKYEAKSQSEEQEEVLKAEQAVSGDRSTEEKRRLSLQREKIIARVSIDNRTRALVQALRRTADPRLCITRVEELTFHLLEFPEGKGVAVREKIIPYLLRLRQIKDETLQAAVREILALIGYVDPVKGRGIRILSIDGGGIRGVVALQTLRKLVELTQKPVHQLFDYICGVSTGAILAFMLGLFHMPLDECEELYRKLGSDVFSQNVIVGTVKMSWSHAFYDSQTWENILKDRMGSSLMIETARNPTCPKVAAVSTIVNRGITPKAFVFRNYGHFPGVNSHYLGGCHYKMWQAIRASSAAPGYFAEYALGNDLHQDGGLLLNNPSALAMHECKCLWPDVPLECIVSLGTGRYESDVRNTTTYTSLKTKLSNVINSATDTEEVHVMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLNQLQLEGLKYIERNEEKMKKLAKILSQEKTTLQKINDWIKLKTDMYEGLPFFSKL", "length": 783, "header": "tr|F1SAE7-1|F1SAE7_PIG Isoform 1 of Calcium-independent phospholipase A2-gamma OS=Sus scrofa OX=9823 GN=PNPLA8 PE=4 SV=3 CANONICAL=F1SAE7-1" }, "locus": { "chromosome": "9", "start_pos": 108311495, "end_pos": 108272158, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016827.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016827.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016377.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016377.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAE6", "url": "https://www.uniprot.org/uniprotkb/F1SAE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521328", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521328", "resource": "KEGG Pathway" }, { "id": "R-SSC-1482788", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482788", "resource": "Reactome", "description": "Acyl chain remodelling of PC" }, { "id": "R-SSC-1482839", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "resource": "Reactome", "description": "Acyl chain remodelling of PE" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9RYE9-1", "protein_name": "Calcium-independent phospholipase A2-gamma", "gene_name": "PNPLA8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLLRIPSTIMPGCGIIYWNLSNARSLCGKQRSKQLPFLCSPEHYWRISHISLQRGVHMSRIRCKWTKSEAHSCSKHCSPLSHHGLHLAVLRLSTSAPKGLTKVSPRMSRIKNTLNSVSKAVFGKQNEMISRLAQLKPSSRILRKVTDSGWLKQKNVKQTIKFLKKYSDKSAEKSSIPAKESQVIEKDDIGKPSLFHYTSNITTKFGESFYFLSSHINSYFKREEKMSQQNEDQHFQEKSELELKKVEDEKPSSPDPGILSDKKLDSEASLYSEDKPGSPSGTPEVLPISTKQSIANFLSRPTEGVQALVGGYIGGLVPKLKYDSKSQLEDQEEATKAEQAVSKDKNAEEKRRLSLQREKIIARVSIDNRTRALVQALRRTTDPRLCINRVEELTFHLLEFPEGKGVAVKEKIIPYLLRLRQIKDETLQAAVREILALIGYVDPVKGRGIRILSIDGGGTRGVVALQTLRKLVELTQKPVHQLFDYICGVSTGAILAFMLGLFHMPLDECEELYRKLGSDVFSQNVIVGTVKMSWSHAFYDSQTWENILKDRMGSSLMIETARNPKCPKVAAVSTIVNRGITPKAFVFRNYGHFPGINSHYLGGCQYKMWQAIRASSAAPGYFAEYALGNDLHQDGGLLLNNPSALAMHECKCLWPDVPLECIVSLGTGRYESDVRNNVTYTSLKTKLSNVINSATDTEEVHVMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLNQLQLEGLKYIERNEEKMKKLAKILSQEKTTLQKINDWIKLKTDMYEGLPFFSKL", "length": 789 }, "evidence": [ { "id": "F1SAE7", "url": "https://omabrowser.org/oma/group/F1SAE7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZRC4-1", "protein_name": "Calcium-independent phospholipase A2-gamma", "gene_name": "Pnpla8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSINLTLDIYIYFLNNARSFCGKQRSKQLNFLCSKQYWRMNHVNVHREFHTSKKSCKWNRSEAHCSKHWHSSSNHGVHIGIVKLSTSAPKGLTKVSIHMSRIKSTLNSVSKAIFGSQNEMVSRLAQFKPSSRIFRKVSDRGWLKHKNVKQAIESLKNYSDKSAEKNSFAEQKSYFADKEEGSDKHSLYHYAYRITTRFGESFYFLANHINSYFKNKEKMSQIKEDRQLQDKPCLEESKSISPSPDILTDRPDSGPPLNVEDKLSSSTQLPEALPVSTKQSIANFLSRPTEGVQALVGGYIGGLVPKLKSDPKSQPEEEEEPSKTDEPICKDKKAEEKKRVLLQREKIIARVSIDNRTRALVQALRRTTDPKLCITRVEELTFHLLEFPEGKGVAVKEKIIPYLLRLRQIKDETLQAAVREILALIGYVDPVKGRGIRILAIDGGGTRGVVALQTLRKLVELTQKPIHQLFDYICGVSTGAILAFMLGLFHMPLDECEELYRKLGSDVFTQNVIVGTVKMSWSHAFYDSHTWEKILKDKVGSALMIETARDPLCPKVAAVSTIVNRGQTPKAFVFRNYGHFPGTNSHYLGGCQYKMWQAIRASSAAPGYFAEYALGNDLHQDGGLLLNNPSALALHECKCIWPDTPLECIVSLGTGRYESDVRNTTTYTSLKTKLSNVISSATDTEEVHIMLDGLLPADTYFRFNPVICENIPLDESRNEKLDQLQLEGMKYLERNDEKMKKLAKILSREKTTLQKISDWIKLKSDMYEGLPFFSKL", "length": 776 }, "evidence": [ { "id": "F1SAE7", "url": "https://omabrowser.org/oma/group/F1SAE7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3H0N8-1", "protein_name": "Calcium-independent phospholipase A2-gamma", "gene_name": "Pnpla8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSINLTLDIYIYFLGNARSLCGNQRSKQLPFVCSKNYWRVNQSLSVHRDFHTSKKSCKWSKGKACCSKHWHSPSDHGLHIGGLKLSTSAPKGLTKVSIHMSRIKSTLNSVSKAIFGSQNEMVSRLVQFKPSSRFLRKISDRGWLKQNNVKQAIESLKKYSDKSAEKNSIVEQKSYIADKEEDTGKRSLFHCTYNITNRVEESFYILTNHINIYFNRKEKMPQTKEIKHLQDKPDFEEGKSDSLSPNILTNTSDSGSPLDAGDKPSSPSQMPEVLPGSAKQSIANFLSRPTEGVQALVGGYIGGLVPRLKSDSRSQPEGQEEPAKTEQAVSKDKKAEEKKRVSLQREKIIARVSIDNRTRALVQALRRTTDPKLCITRVEELTFHLLEFPEGKGVAVKEKIIPYLLRLRQIKDETLQAAVREILALIGYVDPVKGRGIRILTIDGGGTRGVVALQTLRKLVELTQKPIHQLFDYICGVSTGAILAFMLGLFHLPLDQCEELYRKLGSDVFSQNVIVGTVKMSWSHAFYDSHTWEKILQDRMGSALMIETARDPACPKVAAVSTIVNRGLTPKAFVFRNYSHFPGINSHYLGGCQYKLWQAIRASSAAPGYFAEYALGNDLHQDGGLLLNNPSALAMHECKCIWPDAPLECIVSLGTGRYESDVRNTTTYTSLKTKLSNVISSATDTEEVHVILDGLLPPDTYFRFNPVMCENIPLDESRNEKLDQLQLEGMKYIERNEQKMKKVAKILSQEKTTLQKINDWIKLKSDMYEGLPFFSKL", "length": 777 }, "evidence": [ { "id": "F1SAE7", "url": "https://omabrowser.org/oma/group/F1SAE7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8K1N1-1", "protein_name": "Calcium-independent phospholipase A2-gamma", "gene_name": "Pnpla8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSINLTLDIYIYFLNNARSLCGKQRSKQLHFVCSKQYWRMNHVNVHREFHTSKKSCKWNRSEAHCSKHWHSPSNHGLHFGIVRLSTSAPKGLTKVSIHMSRIKSTLNSVSKAIFGSQNEMVTRLAQFKPSSRILRKVSDKGWLKQKNVKQAVESLKNYSDKSAGKNSLAEQKSYFADKEEDSGKHSLFHYTYGITTRFGESFSVLANHINSYFKSKGKMSQTKEDKQLQDKPDLEERKSSSPGPDTVADRPDSESPLEVKDKLSSPTQMPEAHPVSAKQSIANFLSRPTEGVQALVGGYIGGLVPKLKSDPKSPPEEQEVSAKTEQAVNKDKKAEEKKRVLLQQEKIIARVSIDNRTRALVQALRRTADPKLCITRVEELTFHLLEFPEGKGVAIKEKIIPYLLRLRQVKDETLQAAVREILALIGYVDPVKGRGIRILTIDGGGTRGVVALQTLRKLVELTQKPIHQLFDYICGVSTGAILAFMLGLFHMPLDECEELYRKLGSDVFTQNVIVGTVKMSWSHAFYDSNTWEKILKDRIGSALMIETARNPACPKVAAISTIVNRGQTPKAFVFRNYGHFPGTNSHYLGGCQYKMWQAIRASSAAPGYFAEYALGSDLHQDGGLLLNNPSALALHECKCIWPDTPLECIVSLGTGRYESDVRNTSTYTSLKTKLSNVISSATDTEEVHIMLDGLLPSDTYFRFNPVICENIPLDESRDEKLDQLQLEGMKYIERNDQKMKKVAKILSQEKTTLQKINDWIKLKSDMYEGLPFFSKL", "length": 776 }, "evidence": [ { "id": "F1SAE7", "url": "https://omabrowser.org/oma/group/F1SAE7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NP80-1", "protein_name": "Calcium-independent phospholipase A2-gamma", "gene_name": "PNPLA8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSINLTVDIYIYLLSNARSVCGKQRSKQLYFLFSPKHYWRISHISLQRGFHTNIIRCKWTKSEAHSCSKHCYSPSNHGLHIGILKLSTSAPKGLTKVNICMSRIKSTLNSVSKAVFGNQNEMISRLAQFKPSSQILRKVSDSGWLKQKNIKQAIKSLKKYSDKSAEKSPFPEEKSHIIDKEEDIGKRSLFHYTSSITTKFGDSFYFLSNHINSYFKRKEKMSQQKENEHFRDKSELEDKKVEEGKLRSPDPGILAYKPGSESVHTVDKPTSPSAIPDVLQVSTKQSIANFLSRPTEGVQALVGGYIGGLVPKLKYDSKSQSEEQEEPAKTDQAVSKDRNAEEKKRLSLQREKIIARVSIDNRTRALVQALRRTTDPKLCITRVEELTFHLLEFPEGKGVAVKERIIPYLLRLRQIKDETLQAAVREILALIGYVDPVKGRGIRILSIDGGGTRGVVALQTLRKLVELTQKPVHQLFDYICGVSTGAILAFMLGLFHMPLDECEELYRKLGSDVFSQNVIVGTVKMSWSHAFYDSQTWENILKDRMGSALMIETARNPTCPKVAAVSTIVNRGITPKAFVFRNYGHFPGINSHYLGGCQYKMWQAIRASSAAPGYFAEYALGNDLHQDGGLLLNNPSALAMHECKCLWPDVPLECIVSLGTGRYESDVRNTVTYTSLKTKLSNVINSATDTEEVHIMLDGLLPPDTYFRFNPVMCENIPLDESRNEKLDQLQLEGLKYIERNEQKMKKVAKILSQEKTTLQKINDWIKLKTDMYEGLPFFSKL", "length": 782 }, "evidence": [ { "id": "F1SAE7", "url": "https://omabrowser.org/oma/group/F1SAE7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "peroxisomal membrane", "id": "GO:0005778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005778", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "triglyceride homeostasis", "id": "GO:0070328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070328", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "cardiolipin metabolic process", "id": "GO:0032048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032048", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "phosphatidylethanolamine catabolic process", "id": "GO:0046338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046338", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "phosphatidylcholine catabolic process", "id": "GO:0034638", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034638", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "linoleic acid metabolic process", "id": "GO:0043651", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043651", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "arachidonate secretion", "id": "GO:0050482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050482", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "arachidonate metabolic process", "id": "GO:0019369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019369", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "prostaglandin biosynthetic process", "id": "GO:0001516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001516", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphatidylcholine lysophospholipase activity", "id": "GO:0004622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004622", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" }, { "name": "phospholipase A2 activity", "id": "GO:0004623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004623", "evidence": [ { "database": "UniProtKB", "id": "F1SAE7", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 670, "end_pos": 672, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "15177", "name": "", "equation": "a 1-acyl-sn-glycero-3-phosphocholine + H2O = sn-glycerol 3-phosphocholine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15177", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15177" } ] }, { "id": "15801", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15801", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15801" } ] }, { "id": "18689", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 2-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "18689", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/18689" } ] }, { "id": "38779", "name": "", "equation": "1-hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + H2O = 1-hexadecanoyl-sn-glycero-3-phosphocholine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "38779", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/38779" } ] }, { "id": "40427", "name": "", "equation": "1-hexadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + H2O = 1-hexadecanoyl-sn-glycero-3-phosphocholine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40427", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40427" } ] }, { "id": "40431", "name": "", "equation": "1-hexadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphoethanolamine + H2O = 1-hexadecanoyl-sn-glycero-3-phosphoethanolamine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40431", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40431" } ] }, { "id": "40571", "name": "", "equation": "1-hexadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + H2O = 2-(5Z,8Z,11Z,14Z)-eicosatetraenoyl-sn-glycero-3-phosphocholine + hexadecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40571", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40571" } ] }, { "id": "40579", "name": "", "equation": "1-O-(1Z)-hexadecenyl-2 (5Z,8Z,11Z,14Z)-eicosatetraenoyl-sn-glycero-3-phosphocholine + H2O = 1-(1Z-hexadecenyl)-sn-glycero-3-phosphocholine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40579", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40579" } ] }, { "id": "40639", "name": "", "equation": "1-acyl-2-(9Z,12Z)-octadecadienoyl-sn-glycero-3-phosphoethanolamine + H2O = a 1-acyl-sn-glycero-3-phosphoethanolamine + (9Z,12Z)-octadecadienoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40639", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40639" } ] }, { "id": "40643", "name": "", "equation": "1-acyl-2-(9Z,12Z)-octadecadienoyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + (9Z,12Z)-octadecadienoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40643", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40643" } ] }, { "id": "40647", "name": "", "equation": "1-acyl-2-(5Z,8Z,11Z,14Z)-eicosatetraenoyl-sn-glycero-3-phosphoethanolamine + H2O = a 1-acyl-sn-glycero-3-phosphoethanolamine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40647", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40647" } ] }, { "id": "40651", "name": "", "equation": "1-acyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40651", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40651" } ] }, { "id": "40811", "name": "", "equation": "1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphocholine + H2O = (9Z,12Z)-octadecadienoate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40811", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40811" } ] }, { "id": "40819", "name": "", "equation": "1-octadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + H2O = 1-octadecanoyl-sn-glycero-3-phosphocholine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40819", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40819" } ] }, { "id": "40823", "name": "", "equation": "1-octadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + H2O = 2-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + octadecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40823", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40823" } ] }, { "id": "41063", "name": "", "equation": "1-hexadecanoyl-2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycero-3-phosphocholine + H2O = 2-(4Z,7Z,10Z,13Z,16Z,19Z-docosahexaenoyl)-sn-glycero-3-phosphocholine + hexadecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41063", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41063" } ] }, { "id": "44068", "name": "", "equation": "a 1-O-(1Z-alkenyl)-2-acyl-sn-glycero-3-phosphocholine + H2O = a 1-O-(1Z-alkenyl)-sn-glycero-3-phosphocholine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "44068", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/44068" } ] }, { "id": "44604", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phosphoethanolamine + H2O = a 1-acyl-sn-glycero-3-phosphoethanolamine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "44604", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/44604" } ] }, { "id": "52812", "name": "", "equation": "1',3'-bis-[1,2-di-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phospho]-glycerol + H2O = 1'-[1,2-di-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phospho]-3'-[1-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phospho]-glycerol + (9Z,12Z)-octadecadienoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "52812", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/52812" } ] }, { "id": "67156", "name": "", "equation": "1-O-(1Z-hexadecenyl)-2-(9Z-octadecenoyl)-sn-glycero-3-phosphocholine + H2O = 1-(1Z-hexadecenyl)-sn-glycero-3-phosphocholine + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67156", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67156" } ] }, { "id": "67272", "name": "", "equation": "1'-[1-acyl-2-(9-hydroxy-(10E,12Z)-octadecadienoyl)-sn-glycero-3-phospho]-3'-[1,2-diacyl-sn-glycero-3-phospho]-glycerol + H2O = 9-hydroxy-(10E,12Z)-octadecadienoate + 1'-[1,2-diacyl-sn-glycero-3-phospho],3'-[1-acyl-sn-glycero-3-phospho]-glycerol + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67272", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67272" } ] }, { "id": "R-SSC-1482816", "name": "PC is hydrolyzed to 1-acyl LPC by PLA2[6]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482816", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482816" } ] }, { "id": "R-SSC-1482887", "name": "PE is hydrolyzed to 1-acyl LPE by PLA2[3]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482887", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482887" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAE7" }, { "id": "PS51635", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51635" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PNPLA", "eco_id": "ECO_0000259", "start_pos": 446, "end_pos": 641, "start_aa": "Leu", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 362, "end_pos": 364 }, { "start_pos": 670, "end_pos": 672 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAF9-1", "uniprot_ac": "F1SAF9", "uniprot_id": "F1SAF9_PIG", "mass": { "chemical_mass": 47862.0, "monoisotopic_mass": 47862.0 }, "refseq": { "ac": "XP_005667489", "name": "RING finger protein 26", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667489" }, "gene_names": [ { "name": "RNF26", "type": "recommended", "evidence": [ { "id": "F1SAF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ] }, { "name": "RNF26", "type": "synonym", "evidence": [ { "id": "XP_005667489", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667489" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase RNF26", "type": "recommended", "evidence": [ { "id": "F1SAF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAF9/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1SAF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAF9/entry#names_and_taxonomy" } ] }, { "name": "RING finger protein 26", "type": "synonym", "evidence": [ { "id": "XP_005667489", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667489" }, { "id": "F1SAF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAF9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "E3 ubiquitin-protein ligase that plays a key role in endosome organization by retaining vesicles in the perinuclear cloud. Acts as a platform for perinuclear positioning of the endosomal system by mediating ubiquitination of SQSTM1 through interaction with the ubiquitin conjugating enzyme UBE2J1. Ubiquitinated SQSTM1 attracts specific vesicle-associated adapters, forming a molecular bridge that restrains cognate vesicles in the perinuclear region and organizes the endosomal pathway for efficient cargo transport. Also acts as a regulator of type I interferon production in response to viral infection by mediating the formation of 'Lys-11'-linked polyubiquitin chains on TMEM173/STING, leading to stabilize TMEM173/STING. Also required to limit type I interferon response by promoting autophagic degradation of IRF3.", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9#function" }, { "database": "UniProtKB", "id": "ARBA00057605", "url": "https://www.uniprot.org/uniprotkb/ARBA00057605#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF26", "url": "https://www.uniprot.org/uniprotkb/F1SAF9", "locus": { "chromosome": "9", "start_pos": 46546569, "end_pos": 46543735, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015117", "url": "https://www.ensembl.org/id/ENSSSCG00000015117" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015117", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015117", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16788", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16788", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100738035", "url": "https://www.ncbi.nlm.nih.gov/gene/100738035", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040089", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040089", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738035", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738035", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TAILLWT", "url": "https://omabrowser.org/oma/group/TAILLWT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAF9", "url": "https://www.orthodb.org/?gene=F1SAF9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22696", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22696", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22696:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22696:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005667489", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667489", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAF9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAVYLVVNGVGLLLDVLTLVLDLNFLLVSSLLASLAWLLAFIYNLPHTVLTSLLHLGRGVLLSLLALIETVVRFTFGGLQALCTVLYSCYSGLESLKLLGHLASHGALRSREILHRGVLNMVSSGHALLRQACDICAITMSLVAYVINSLVNICLIGTQNLFSLVLALWDAVMGPLWRMTDVVAAFLAHISSSAVAMSILLWTPCQLVLELLASAARFLASFVLVNLTGLALLACVLAVTVTVLHPDLTLRLASRAFSQLHARPSYHRLREDVVRLSRLALGLEAWRRVWSRSLQLASWPNRGGAPGAPQGGPRRVPSDRTWRQDTLPEAGPRTEAEGEEVRMARMTAARGRERLNVEEPIAGQDPWKLLKEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRGILQTLNVYL", "length": 433, "header": "tr|F1SAF9-1|F1SAF9_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF26 OS=Sus scrofa OX=9823 GN=RNF26 PE=4 SV=1 CANONICAL=F1SAF9-1" }, "isoforms": [ { "isoform_ac": "F1SAF9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAF9/entry#F1SAF9-1", "sequence": { "sequence": "MEAVYLVVNGVGLLLDVLTLVLDLNFLLVSSLLASLAWLLAFIYNLPHTVLTSLLHLGRGVLLSLLALIETVVRFTFGGLQALCTVLYSCYSGLESLKLLGHLASHGALRSREILHRGVLNMVSSGHALLRQACDICAITMSLVAYVINSLVNICLIGTQNLFSLVLALWDAVMGPLWRMTDVVAAFLAHISSSAVAMSILLWTPCQLVLELLASAARFLASFVLVNLTGLALLACVLAVTVTVLHPDLTLRLASRAFSQLHARPSYHRLREDVVRLSRLALGLEAWRRVWSRSLQLASWPNRGGAPGAPQGGPRRVPSDRTWRQDTLPEAGPRTEAEGEEVRMARMTAARGRERLNVEEPIAGQDPWKLLKEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRGILQTLNVYL", "length": 433, "header": "tr|F1SAF9-1|F1SAF9_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF26 OS=Sus scrofa OX=9823 GN=RNF26 PE=4 SV=1 CANONICAL=F1SAF9-1" }, "locus": { "chromosome": "9", "start_pos": 46545623, "end_pos": 46544325, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016483.3", "url": "https://www.ensembl.org/id/ENSSSCT00000016483.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016040.1", "url": "https://www.ensembl.org/id/ENSSSCP00000016040.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738035", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738035", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A4Z4-1", "protein_name": "E3 ubiquitin-protein ligase RNF26", "gene_name": "RNF26", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MELVLLLLRGLRLALDLLLLLLDLNFFLVSSLVTALLWLLTTAASLPGAATAGMWACWNGLLGGLCGLAEAACGLALGAMQGLGGLLRGCCSALEGLKVLGHLLTHLGLRGRELLQRGLCSLLGSGQALLREAGEGLAIGVSLLAYLVNSMVNLCLLGTQNFFTLLLALWDSVVSPVLRVADLLAAFMAHVSSSAIAISILLWSPCQLAFELLVSTTELLIGIFFVNVYGLALLLAIIVVSTVIFNPGLLLTLLGHVLGYFHTLPAYPRLQQEVWRLYQMAVLMMGMALTSQTWRRLVDWSLQVTNWSRGGRTMNRESDRRGTAQGLGRLMLAGDSHAAAQQEEQPDAEQVPQAHPSLSRSTVSGQRLQAPRDEPSTSWGKAPRREQLNAAAGDGAGVPDDDPWMLLKEQEERKKCVICQDQTKTVLLLPCRHLCLCQECTEVLLQQAIYQRNCPLCRQMILQTLNVYL", "length": 469 }, "evidence": [ { "id": "F1SAF9", "url": "https://omabrowser.org/oma/group/F1SAF9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9TX98-1", "protein_name": "E3 ubiquitin-protein ligase RNF26", "gene_name": "RNF26", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEAVYLVVNGVGLLLDVLTLVLDLNFLLVSSLLASLAWLLAFIYNLPHTVLTSLLHLGRGVLLSLLALIEAMVRFTCGGLQALSTVLYSCSSGLESLKLLGHLASHGALRSREILHRGVLNMVSNGHALLRQICDVCAITMSLVAYVINSLVNICLIGTQNFFSLVLALWDAVMGPLWRMTDVVAAFLAHISSSAVAMSILLWTPCQLVLELLASAARLLGSFVLVNLTGLVLLACVLAVTVTLLHPDLTLRLATRALSQLHARPSYHRLREDVVRLSRLVLGLEAWRRVWSRSLQLASWPNRGGAPGAPQGGPRRLTSARTWRQDALPEAGPRSEAEEEEVRMARVTAARGRERLNEEESVAGQDPWKLLKEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRQGILQTLNVYL", "length": 433 }, "evidence": [ { "id": "F1SAF9", "url": "https://omabrowser.org/oma/group/F1SAF9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1QZ63-1", "protein_name": "E3 ubiquitin-protein ligase RNF26", "gene_name": "rnf26", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLIMGVLNIVFSTVGKCVDVICLLLDLNFVIVSSLIQLLVSVLSFINSLPMLLTNSVFECWNLTLLCIITMRDGVTVVTHNMVGGWTQLLGGVLESFKIIGYLSSHLLLRTKELLHRGLLSGHGLLRQAWEGFGILFSLLLYFINTIVNLLLIGTQNLYSLLVSTVEAVSCPLQKALELALTVLTFLYSSLVGTSILLWTPCRLAMEFLGSACHIFVSIFLLNSYGLLLTLVIITGATVYLNPALPRQVSLRMITYVNTVPILRRLQMVLQRLYVLERNVWQRLAWHRSRIGLLVAAERDIGQAEPNIEPQVELNVPNQEVEDVPEDAPQPDIPLPSSSAHRPLRKFPSEDSCRGPPTDNLLNLLQEQEERKKCVICQDSTKTVVLLPCRHLCLCRECTNILLRQPMYQQNCPLCRHMILQTMDVYL", "length": 427 }, "evidence": [ { "id": "F1SAF9", "url": "https://omabrowser.org/oma/group/F1SAF9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BUH7-1", "protein_name": "E3 ubiquitin-protein ligase RNF26", "gene_name": "Rnf26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEAVYLVVNGVGLVLDLLTLMLDLNFLLVSSLLATLAWLLAFIYNLPHTVLTSLLHLGRGFLLSLLALVEAVVRFTFGGLQALGTLLYSCYSGLESLKLLGHLASHGALRSREFLNRGILNMVSNGHALLRQACDICAIAMSLVAYVINSLVNICLISTQNFFSLVLALWDAVTGPLWRMTDVVAAFLAHISSSAVAMAILLWTPCQLALELLASAARLLASCVVFHLTGLVLLACVLAVILIVLHPEQTLRLATQALSQLHARPSYHRLWEDIVRLTRLPLGLEAWRRVWSRSLQLASWPNRGGAPGAPQGGPRRVFSARIQPQDTPPEAEEEVIRTAPARGREQLNEDEPAAGQDPWKLLKEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRSILQTLNVYL", "length": 424 }, "evidence": [ { "id": "F1SAF9", "url": "https://omabrowser.org/oma/group/F1SAF9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BY78-1", "protein_name": "E3 ubiquitin-protein ligase RNF26", "gene_name": "RNF26", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAVYLVVNGLGLVLDVLTLVLDLNFLLVSSLLASLAWLLAFVYNLPHTVLTSLLHLGRGVLLSLLALIEAVVRFTCGGLQALCTLLYSCCSGLESLKLLGHLASHGALRSREILHRGVLNVVSSGHALLRQACDICAIAMSLVAYVINSLVNICLIGTQNLFSLVLALWDAVTGPLWRMTDVVAAFLAHISSSAVAMAILLWTPCQLALELLASAARLLASFVLVNLTGLVLLACVLAVTVTVLHPDFTLRLATQALSQLHARPSYHRLREDVMRLSRLALGSEAWRRVWSRSLQLASWPNRGGAPGAPQGDPMRVFSVRTRRQDTLPEAGRRSEAEEEEARTIRVTPVRGRERLNEEEPPGGQDPWKLLKEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRNCPLCRRGILQTLNVYL", "length": 433 }, "evidence": [ { "id": "F1SAF9", "url": "https://omabrowser.org/oma/group/F1SAF9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "endosome organization", "id": "GO:0007032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007032", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" }, { "name": "protein K11-linked ubiquitination", "id": "GO:0070979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070979", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" }, { "name": "protein localization to perinuclear region of cytoplasm", "id": "GO:1905719", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905719", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" }, { "name": "negative regulation of defense response to virus", "id": "GO:0050687", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050687", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" }, { "name": "regulation of type I interferon production", "id": "GO:0032479", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032479", "evidence": [ { "database": "UniProtKB", "id": "F1SAF9", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAF9" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 380, "end_pos": 422, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 227, "end_pos": 229 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAG3-1", "uniprot_ac": "F1SAG3", "uniprot_id": "F1SAG3_PIG", "mass": { "chemical_mass": 43028.0, "monoisotopic_mass": 43028.0 }, "refseq": { "ac": "XP_020952014", "name": "di-N-acetylchitobiase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952014" }, "gene_names": [ { "name": "CTBS", "type": "recommended", "evidence": [ { "id": "F1SAG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAG3" } ] }, { "name": "CTBS", "type": "synonym", "evidence": [ { "id": "XP_020952014", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952014" } ] } ], "protein_names": [ { "name": "Di-N-acetylchitobiase", "type": "recommended", "evidence": [ { "id": "F1SAG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAG3/entry#names_and_taxonomy" } ] }, { "name": "di-N-acetylchitobiase", "type": "synonym", "evidence": [ { "id": "XP_020952014", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952014" } ] } ], "function": [ { "annotation": "Reducing-end exoglycosidase involved in glycan degradation. Hydrolyzes N,N'-diacetylchitobiose (GlnNAc2) and higher chitin-oligosaccharides (GlcNAc(n)) to monomeric GlcNAc acting on reducing-end residues. During N-linked glycoprotein degradation, it cleaves single GlcNAc molecules uniquely from the reducing end of N,N'-diacetylchitobiose units linking oligosaccharides to proteins, and therefore it functions after cleavage of the Asn-GlcNAc bond and asparagine removal by glycosylasparaginase.", "evidence": [ { "database": "UniProtKB", "id": "F1SAG3", "url": "https://www.uniprot.org/uniprotkb/F1SAG3#function" }, { "database": "UniProtKB", "id": "ARBA00094420", "url": "https://www.uniprot.org/uniprotkb/ARBA00094420#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAG3", "url": "https://www.uniprot.org/uniprotkb/F1SAG3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CTBS", "url": "https://www.uniprot.org/uniprotkb/F1SAG3", "locus": { "chromosome": "6", "start_pos": 129207863, "end_pos": 129173444, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003758", "url": "https://www.ensembl.org/id/ENSSSCG00000003758" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003758", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003758", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02875", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02875", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523254", "url": "https://www.ncbi.nlm.nih.gov/gene/100523254", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011583", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011583", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523254", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523254", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KWIMKQV", "url": "https://omabrowser.org/oma/group/KWIMKQV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46290", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46290", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46290:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46290:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020952014", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952014", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "30671", "url": "https://www.rhea-db.org/rhea/30671", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "84983", "url": "https://www.rhea-db.org/rhea/84983", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "85195", "url": "https://www.rhea-db.org/rhea/85195", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "85199", "url": "https://www.rhea-db.org/rhea/85199", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "85203", "url": "https://www.rhea-db.org/rhea/85203", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "85207", "url": "https://www.rhea-db.org/rhea/85207", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "85211", "url": "https://www.rhea-db.org/rhea/85211", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAG3", "url": "https://www.uniprot.org/uniprotkb/F1SAG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAG3-1", "url": "https://www.uniprot.org/uniprotkb/F1SAG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARTKLRQHLLVSSALGAPTLARLVLLLLLPLLQAPPLGAEAHCPCHNPALCRPITHKPDFEVFVFDVGHKTWKYYDWSQITTVAFFGNYDSELLCYAHSKGARAVLKGDVSVKDIVNATFRASWIAQQIKQAKTQYMDGINLDIEQDVALSSPEYYALTALVKETTDAFHREIKGSQVTFDVSWSPHCIAQRCYNYTAIADACDFLFVMSYDERSLPWSKCIAGANSPYTQTLTGYDQYINIGINPKKLVMGIPWYGYDYTCKTLSEHHVCTTAKLPCKDAVHRQVPYQIIMKQLNNSYSGSLWDENQKSPYYHYQDQAGNFHQVWYDNPRSISLKAAYVQSHGLLGIGMWHASCLDYSGNALAKQQTEEMWKALKPKL", "length": 380, "header": "tr|F1SAG3-1|F1SAG3_PIG Isoform 1 of Di-N-acetylchitobiase OS=Sus scrofa OX=9823 GN=CTBS PE=3 SV=3 CANONICAL=F1SAG3-1" }, "isoforms": [ { "isoform_ac": "F1SAG3-1", "url": "https://www.uniprot.org/uniprotkb/F1SAG3/entry#F1SAG3-1", "sequence": { "sequence": "MARTKLRQHLLVSSALGAPTLARLVLLLLLPLLQAPPLGAEAHCPCHNPALCRPITHKPDFEVFVFDVGHKTWKYYDWSQITTVAFFGNYDSELLCYAHSKGARAVLKGDVSVKDIVNATFRASWIAQQIKQAKTQYMDGINLDIEQDVALSSPEYYALTALVKETTDAFHREIKGSQVTFDVSWSPHCIAQRCYNYTAIADACDFLFVMSYDERSLPWSKCIAGANSPYTQTLTGYDQYINIGINPKKLVMGIPWYGYDYTCKTLSEHHVCTTAKLPCKDAVHRQVPYQIIMKQLNNSYSGSLWDENQKSPYYHYQDQAGNFHQVWYDNPRSISLKAAYVQSHGLLGIGMWHASCLDYSGNALAKQQTEEMWKALKPKL", "length": 380, "header": "tr|F1SAG3-1|F1SAG3_PIG Isoform 1 of Di-N-acetylchitobiase OS=Sus scrofa OX=9823 GN=CTBS PE=3 SV=3 CANONICAL=F1SAG3-1" }, "locus": { "chromosome": "6", "start_pos": 129207401, "end_pos": 129173477, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004160.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004160.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004066.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004066.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAG3", "url": "https://www.uniprot.org/uniprotkb/F1SAG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523254", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523254", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1N3H8-1", "protein_name": "Di-N-acetylchitobiase", "gene_name": "CTBS", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARLQLAGSRRLVPLPRRAPRLAPLLLPLLLALPDGARADCPCKVPALCRPITHRPDFEVFVFNVGHKTWKYYDWSQITTVVLFSNYDPELMCHAHAKGARVVLKGDVPVKDIINATFRASWIAQQVKLAKTQYMDGINLDIEQDVAHSSPEYYALTALVKETTDSFHHEIKGSQVTFDVPWGPNCVGARCYNYTGIADACDFLFVMSYDERCLACSQCIAGANSPYIQTLTGYDDFIKIGINPKKLVMGIPWYGYDFTCQNLSVDHVCTTAKYPCRDAVHHQVTYQKIMKQVNSSTSGRLWDKNQQSPYYHYKDQAGHFHQVWYDDPQSISLKASYVQKRGILGIGMWHANCLDYSGDAIARQQTEEMWKALKPNL", "length": 377 }, "evidence": [ { "id": "F1SAG3", "url": "https://omabrowser.org/oma/group/F1SAG3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q01459-1", "protein_name": "Di-N-acetylchitobiase", "gene_name": "CTBS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRPQLRRWRLVSSPPSGVPGLALLALLALLALRLAAGTDCPCPEPELCRPIRHHPDFEVFVFDVGQKTWKSYDWSQITTVATFGKYDSELMCYAHSKGARVVLKGDVSLKDIIDPAFRASWIAQKLNLAKTQYMDGINIDIEQEVNCLSPEYDALTALVKETTDSFHREIEGSQVTFDVAWSPKNIDRRCYNYTGIADACDFLFVMSYDEQSQIWSECIAAANAPYNQTLTGYNDYIKMSINPKKLVMGVPWYGYDYTCLNLSEDHVCTIAKVPFRGAPCSDAAGRQVPYKTIMKQINSSISGNLWDKDQRAPYYNYKDPAGHFHQVWYDNPQSISLKATYIQNYRLRGIGMWNANCLDYSGDAVAKQQTEEMWEVLKPKLLQR", "length": 385 }, "evidence": [ { "id": "F1SAG3", "url": "https://omabrowser.org/oma/group/F1SAG3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q01460-1", "protein_name": "Di-N-acetylchitobiase", "gene_name": "Ctbs", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALSDLLELTLLLLLPLLERLSAEDCPCSEASLCRPIRHHRDFEVFVFDVGQKTWKSYDWSQITTVAVFGKYDSELMCYAHSKGARVVLKGDVALKDIINPTFRASWIAQKVALAKAQHMDGINIDIEQEVDCSSPEYEALTALVRETTEGFHREIEGSQVTFDVAWSPKGIDKRCYNYTGIADACDFLFVMSYDEQSQIWSECIAAANAPYNQTLTGYGDYLRMGISPRKLVMGIPWYGYDYICLNLSKDDVCAIAKVPFRGAPCSDAAGHQVPYRVIMKQVNSSVSGSQWNQDQQAPYYNYKDPTGRLHQVWYDNPRSISLKAAFVKHYGLRGIGMWNANCLDYSDDALAREQTEEMWGALRPRL", "length": 367 }, "evidence": [ { "id": "F1SAG3", "url": "https://omabrowser.org/oma/group/F1SAG3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R242-1", "protein_name": "Di-N-acetylchitobiase", "gene_name": "Ctbs", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALCGLPEFTLLLLPLLARLSAGDCPCSEAALCQPIRHRPDFEVFVFDVGQKTWKSYDWSQITTVAAFGKYDPELMCYAHSKGARVVLKGDISLKNIIDPTFRASWIAQKVDLAKAQYMDGINIDIEQEVNCSSPEYEALTALVKETTESFQREIEGSQVTFDVAWSPKRIDKRCYNYTGIADACDFLFVMSYDEQSQIWSECIAAANAPYNQTLTGYIDYIKMGISPKKLVMGVPWYGYDYICLNLSKDDICTITKVPFRGAPCSDAAGHQVPYKVIMKQVNGSVSGSQWNKDQQAPYYNYKDPAGRFHQVWYDNPQSISLKAAYVKNYGLRGIGMWNANCLDYSDDALAREQTQEMWGALKPRL", "length": 366 }, "evidence": [ { "id": "F1SAG3", "url": "https://omabrowser.org/oma/group/F1SAG3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T293-1", "protein_name": "Probable di-N-acetylchitobiase 2", "gene_name": "ctbs2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRIILLLFLIVFVVAQSSSSSSSSGCPCDSSYLCEPLQIAPRQEFLGFSLNSTQYPNYYWNQLTTLAIFYETIEDELLCIAHENDVRLVWGTTFPIENLGNSSYIEEWIQEQIEKVQSTFTDGLNFDVESPITDPTIAQQYTELVSATNKAFKAINPFYQISIDVAWSPSCIDKRCYDYAGLASNSDFLVAMDYDERSQVFGEKVCTAGANSSPSNALAGINNFTDLGISTDQLVMGLPWYGYIYKNCLNGDEAGLETVVCQIESVPFRGANCSDAAGSEYDYSYLVQLLQDQTINSSAVQWNTEWQSPYFNYIDPITGNVDQVWFDNPQSLSIKVQLAQKLNLRGVAVWNIDFLDFSDQYNSRPMWDALASFFPQSASSEQSLN", "length": 385 }, "evidence": [ { "id": "F1SAG3", "url": "https://omabrowser.org/oma/group/F1SAG3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1SAG3", "url": "https://www.uniprot.org/uniprotkb/F1SAG3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chitinase activity", "id": "GO:0004568", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004568", "evidence": [ { "database": "UniProtKB", "id": "F1SAG3", "url": "https://www.uniprot.org/uniprotkb/F1SAG3" } ], "pmid": "" }, { "name": "chitin binding", "id": "GO:0008061", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008061", "evidence": [ { "database": "UniProtKB", "id": "F1SAG3", "url": "https://www.uniprot.org/uniprotkb/F1SAG3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "chitin catabolic process", "id": "GO:0006032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006032", "evidence": [ { "database": "UniProtKB", "id": "F1SAG3", "url": "https://www.uniprot.org/uniprotkb/F1SAG3" } ], "pmid": "" }, { "name": "oligosaccharide catabolic process", "id": "GO:0009313", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009313", "evidence": [ { "database": "UniProtKB", "id": "F1SAG3", "url": "https://www.uniprot.org/uniprotkb/F1SAG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 118, "end_pos": 120, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "30671", "name": "", "equation": "N,N'-diacetylchitobiose + H2O = 2 N-acetyl-D-glucosamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "30671", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/30671" } ] }, { "id": "84983", "name": "", "equation": "alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc + H2O = alpha-D-Man-(1->3)-[alpha-D-Man-(1->6)]-beta-D-Man-(1->4)-D-GlcNAc + N-acetyl-D-glucosamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "84983", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/84983" } ] }, { "id": "85195", "name": "", "equation": "alpha-hexa-N-acetylchitohexaose + H2O = beta-penta-N-acetylchitopentaose + N-acetyl-alpha-D-glucosamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "85195", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/85195" } ] }, { "id": "85199", "name": "", "equation": "alpha-penta-N-acetylchitopentaose + H2O = beta-tetra-N-acetylchitotetraose + N-acetyl-alpha-D-glucosamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "85199", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/85199" } ] }, { "id": "85203", "name": "", "equation": "alpha-tetra-N-acetylchitotetraose + H2O = beta-tri-N-acetylchitotriose + N-acetyl-alpha-D-glucosamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "85203", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/85203" } ] }, { "id": "85207", "name": "", "equation": "alpha-tri-N-acetylchitotriose + H2O = beta-di-N-acetylchitobiose + N-acetyl-alpha-D-glucosamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "85207", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/85207" } ] }, { "id": "85211", "name": "", "equation": "alpha-di-N-acetylchitobiose + H2O = N-acetyl-beta-D-glucosamine + N-acetyl-alpha-D-glucosamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "85211", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/85211" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAG3" }, { "id": "PS51910", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51910" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GH18", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 380, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 118, "end_pos": 120 }, { "start_pos": 196, "end_pos": 198 }, { "start_pos": 297, "end_pos": 299 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAG6-1", "uniprot_ac": "F1SAG6", "uniprot_id": "F1SAG6_PIG", "mass": { "chemical_mass": 58159.0, "monoisotopic_mass": 58159.0 }, "refseq": {}, "gene_names": [ { "name": "CYP4A90", "type": "recommended", "evidence": [ { "id": "F1SAG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAG6" } ] } ], "protein_names": [ { "name": "Cytochrome P450 family 4 subfamily A member 90", "type": "synonym", "evidence": [ { "id": "F1SAG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAG6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAG6", "url": "https://www.uniprot.org/uniprotkb/F1SAG6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CYP4A90", "url": "https://www.uniprot.org/uniprotkb/F1SAG6", "locus": {} } ], "crossref": [ { "id": "F1SAG6", "url": "https://alphafold.ebi.ac.uk/entry/F1SAG6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003754", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003754", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20678", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20678", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522145", "url": "https://www.ncbi.nlm.nih.gov/gene/100522145", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002401", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002401", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036396", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036396", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050196", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050196", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522145", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522145", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HVESLIW", "url": "https://omabrowser.org/oma/group/HVESLIW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAG6", "url": "https://www.orthodb.org/?gene=F1SAG6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24291", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24291", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24291:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24291:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00067", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00067", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-211935", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211935", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-211958", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211958", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-211979", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211979", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2142691", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2142691", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAG6", "url": "https://www.uniprot.org/uniprotkb/F1SAG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAG6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAG6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVSALSPIGALGSVSGLLQVASVFGLLLLLLKATQLYLHRQWLLKALQQFPSPPSHWLYGHSREHLKDNDLQEALRRVKNFPRACPYWLWGNKAHLVIYDPDYMKVVLGRSDPKLTDVHKFLSPWIGYGLLLSDGQTWFQHRRMLTPAFHYDILKPYVNLMADSVKVMLDKWEQLVTQDSHLEIFGHVSLMTLDTVMKCAFSYQGSVQTDRNSHSYIQAVGNLNSLFVARLRSALYQNDIIYRLSPEGRLSRQACQLAHQHTDQVIRLRKAHLQKEGEMENLRKKRHLDFLDILLFARMENGSSLSDTDLRAEVDTFMFEGHDTTASGISWIFYALASHPEYQQRCREEIRSLLGDGTSITWDHLGQMPYTTMCIKEAMRLYPPVPAIIRELSKPITFPDGRSLPAGIIISLSIYALHHNPKVWPNPEVFDPSRFAPGSAQHSHAFLPFSGGSRNCIGKQFAMNEMKVAVALTLLRFELALDASRVPIPLRRVVLKSKNGIHLYLRKLP", "length": 510, "header": "tr|F1SAG6-1|F1SAG6_PIG Isoform 1 of Cytochrome P450 family 4 subfamily A member 90 OS=Sus scrofa OX=9823 GN=CYP4A90 PE=3 SV=2 CANONICAL=F1SAG6-1" }, "isoforms": [ { "isoform_ac": "F1SAG6-1", "url": "https://www.uniprot.org/uniprotkb/F1SAG6/entry#F1SAG6-1", "sequence": { "sequence": "MSVSALSPIGALGSVSGLLQVASVFGLLLLLLKATQLYLHRQWLLKALQQFPSPPSHWLYGHSREHLKDNDLQEALRRVKNFPRACPYWLWGNKAHLVIYDPDYMKVVLGRSDPKLTDVHKFLSPWIGYGLLLSDGQTWFQHRRMLTPAFHYDILKPYVNLMADSVKVMLDKWEQLVTQDSHLEIFGHVSLMTLDTVMKCAFSYQGSVQTDRNSHSYIQAVGNLNSLFVARLRSALYQNDIIYRLSPEGRLSRQACQLAHQHTDQVIRLRKAHLQKEGEMENLRKKRHLDFLDILLFARMENGSSLSDTDLRAEVDTFMFEGHDTTASGISWIFYALASHPEYQQRCREEIRSLLGDGTSITWDHLGQMPYTTMCIKEAMRLYPPVPAIIRELSKPITFPDGRSLPAGIIISLSIYALHHNPKVWPNPEVFDPSRFAPGSAQHSHAFLPFSGGSRNCIGKQFAMNEMKVAVALTLLRFELALDASRVPIPLRRVVLKSKNGIHLYLRKLP", "length": 510, "header": "tr|F1SAG6-1|F1SAG6_PIG Isoform 1 of Cytochrome P450 family 4 subfamily A member 90 OS=Sus scrofa OX=9823 GN=CYP4A90 PE=3 SV=2 CANONICAL=F1SAG6-1" }, "locus": { "chromosome": "6", "start_pos": 128722128, "end_pos": 128705000, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004156.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004156.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004062.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004062.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAG6", "url": "https://www.uniprot.org/uniprotkb/F1SAG6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522145", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522145", "resource": "KEGG Pathway" }, { "id": "R-SSC-211935", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211935", "resource": "Reactome", "description": "Fatty acids" }, { "id": "R-SSC-211958", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211958", "resource": "Reactome", "description": "Miscellaneous substrates" }, { "id": "R-SSC-211979", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211979", "resource": "Reactome", "description": "Eicosanoids" }, { "id": "R-SSC-2142691", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2142691", "resource": "Reactome", "description": "Synthesis of Leukotrienes (LT) and Eoxins (EX)" } ], "orthologs": [ { "uniprot_canonical_ac": "P24464-1", "protein_name": "Cytochrome P450 4A12", "gene_name": "Cyp4a12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGSALSFTIFPGSILGFLQIATVLTVLLLLFKTAQFYLHRRWLLRATQQFPSPPSHWFFGHKIPKDQEFQDILTRVKNFPSACPQWLWGSNVRIQVYDPDYMKLILGRSDPKSHHSYRFLAPWIGYGLLLLNGQTWFQHRRMLTPAFHYDTLKPYVGIMADSVRIMLDKWEQIVGQDSTLEIFQHITLMTLDTIMKCAFSQEGSVQLDRKYKSYIKAVEDLNNLSFFRIRNIFHQNDIIYSLSSNGRKARSAWQLAHEHTDQVIKSRKAQLQDEEELQKVKQKRRLDFLDILLFARIENGSSLSDKDLRAEVDTFMFEGHDTTASGISWIFYALATNPEHQQGCRKEIQSLLGDGASITWDDLDKMPYTTMCIKEALRIYPPVTAVSRMLSTPVTFPDGRSLPKGITVMLSFYGLHHNPTVWPNPEVFDPYRFAPESSRHSHSFLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPIPIPRLVLKSKNGIYLRLKKLQ", "length": 508 }, "evidence": [ { "id": "F1SAG6", "url": "https://omabrowser.org/oma/group/F1SAG6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91WL5-1", "protein_name": "Cytochrome P450 4A12A", "gene_name": "Cyp4a12a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSASALSSIRFPGSISEYLQVASVLSLLLLLFKTAQLYLHRQWLLSSTQQFPSPPSHWLFGHKILKDQDLQDILTRIKNFPSACPQWLWGSKVRIQVYDPDYMKLILGRSDPKANGSYRFLAPWIGRGLLMLDGQTWFQHRRMLTPAFHYDILKPYTEIMADSVRVMLDKWEQIVGQDSTLEIFRHITLMTLDTIMKCAFSHEGSVQLDRKYKSYIQAVEDLNDLVFSRVRNIFHQNDIIYRVSSNGCKANSACKLAHDHTDQVIKSRRIQLQDEEELEKLKKKRRLDFLDILLFARMENGKSLSDKDLRAEVDTFMFEGHDTTASGISWIFYALATNPEHQQRCRKEIQSLLGDGTSITWNDLDKMPYTTMCIKEALRIYPPVPSVSRELSSPVTFPDGRSLPKGIHVMLSFYGLHHNPTVWPNPEVFDPSRFAPGSSRHSHSFLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRVPIPIPRIVLKSKNGIHLHLKKLQ", "length": 508 }, "evidence": [ { "id": "F1SAG6", "url": "https://omabrowser.org/oma/group/F1SAG6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q93Z79-1", "protein_name": "Cytochrome P450 714A1", "gene_name": "CYP714A1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MENFMVEMAKTISWIVVIGVLGLGIRVYGKVMAEQWRMRRKLTMQGVKGPPPSLFRGNVPEMQKIQSQIMSNSKHYSGDNIIAHDYTSSLFPYLDHWRKQYGRVYTYSTGVKQHLYMNHPELVKELNQANTLNLGKVSYVTKRLKSILGRGVITSNGPHWAHQRRIIAPEFFLDKVKGMVGLVVESAMPMLSKWEEMMKREGEMVCDIIVDEDLRAASADVISRACFGSSFSKGKEIFSKLRCLQKAITHNNILFSLNGFTDVVFGTKKHGNGKIDELERHIESLIWETVKERERECVGDHKKDLMQLILEGARSSCDGNLEDKTQSYKSFVVDNCKSIYFAGHETSAVAVSWCLMLLALNPSWQTRIRDEVFLHCKNGIPDADSISNLKTVTMVIQETLRLYPPAAFVSREALEDTKLGNLVVPKGVCIWTLIPTLHRDPEIWGADANEFNPERFSEGVSKACKHPQSFVPFGLGTRLCLGKNFGMMELKVLVSLIVSRFSFTLSPTYQHSPVFRMLVEPQHGVVIRVLRQ", "length": 532 }, "evidence": [ { "id": "F1SAG6", "url": "https://omabrowser.org/oma/group/F1SAG6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1SAG6", "url": "https://www.uniprot.org/uniprotkb/F1SAG6" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "F1SAG6", "url": "https://www.uniprot.org/uniprotkb/F1SAG6" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen", "id": "GO:0016712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016712", "evidence": [ { "database": "UniProtKB", "id": "F1SAG6", "url": "https://www.uniprot.org/uniprotkb/F1SAG6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F1SAG6", "url": "https://www.uniprot.org/uniprotkb/F1SAG6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SAG6", "url": "https://www.uniprot.org/uniprotkb/F1SAG6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAG6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 510, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAG6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAG6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 302, "end_pos": 304 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAG7-1", "uniprot_ac": "F1SAG7", "uniprot_id": "F1SAG7_PIG", "mass": { "chemical_mass": 12374.0, "monoisotopic_mass": 12374.0 }, "refseq": { "ac": "XP_005656175", "name": "PDZK1-interacting protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656175" }, "gene_names": [ { "name": "PDZK1IP1", "type": "recommended", "evidence": [ { "id": "F1SAG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAG7" } ] }, { "name": "MAP17", "type": "synonym", "evidence": [ { "id": "XP_005656175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656175" } ] }, { "name": "PDZK1IP1", "type": "synonym", "evidence": [ { "id": "XP_005656175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656175" } ] } ], "protein_names": [ { "name": "PDZK1-interacting protein 1", "type": "recommended", "evidence": [ { "id": "F1SAG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAG7/entry#names_and_taxonomy" } ] }, { "name": "PDZK1-interacting protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005656175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656175" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAG7", "url": "https://www.uniprot.org/uniprotkb/F1SAG7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PDZK1IP1", "url": "https://www.uniprot.org/uniprotkb/F1SAG7", "locus": {} } ], "crossref": [ { "id": "F1SAG7", "url": "https://alphafold.ebi.ac.uk/entry/F1SAG7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003753", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003753", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "414756", "url": "https://www.ncbi.nlm.nih.gov/gene/414756", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TECHENI", "url": "https://omabrowser.org/oma/group/TECHENI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAG7", "url": "https://www.orthodb.org/?gene=F1SAG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15296", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15296", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15296:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15296:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15807", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15807", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005656175", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656175", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAG7", "url": "https://www.uniprot.org/uniprotkb/F1SAG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAG7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAINHFWCQEEREPMNMVMTTGNKADGILIGTEGKYSSMAASFRSSEHENAYENTSEEEGRVHSTPM", "length": 114, "header": "tr|F1SAG7-1|F1SAG7_PIG Isoform 1 of PDZK1-interacting protein 1 OS=Sus scrofa OX=9823 GN=PDZK1IP1 PE=3 SV=3 CANONICAL=F1SAG7-1" }, "isoforms": [ { "isoform_ac": "F1SAG7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAG7/entry#F1SAG7-1", "sequence": { "sequence": "MSALSLVILGLLMAVPPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAINHFWCQEEREPMNMVMTTGNKADGILIGTEGKYSSMAASFRSSEHENAYENTSEEEGRVHSTPM", "length": 114, "header": "tr|F1SAG7-1|F1SAG7_PIG Isoform 1 of PDZK1-interacting protein 1 OS=Sus scrofa OX=9823 GN=PDZK1IP1 PE=3 SV=3 CANONICAL=F1SAG7-1" }, "locus": { "chromosome": "6", "start_pos": 128642831, "end_pos": 128637851, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004155.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004155.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004061.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004061.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAG7", "url": "https://www.uniprot.org/uniprotkb/F1SAG7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q923S2-1", "protein_name": "PDZK1-interacting protein 1", "gene_name": "Pdzk1ip1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLALSLLALGLLAEVAPASCQQGLGNLQPWMQGLIAVAVFLVLVAIAFAVNHFWCQEEQEPGSTMMITGNKADGVLVGMDGRYSSMASGFRSSEHKNAFENVLEEEGRVRSTPM", "length": 114 }, "evidence": [ { "id": "F1SAG7", "url": "https://omabrowser.org/oma/group/F1SAG7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SAG7", "url": "https://www.uniprot.org/uniprotkb/F1SAG7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAG7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 114, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAG7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAG7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAH2-1", "uniprot_ac": "F1SAH2", "uniprot_id": "F1SAH2_PIG", "mass": { "chemical_mass": 71896.0, "monoisotopic_mass": 71896.0 }, "refseq": { "ac": "XP_013834921", "name": "ATP-binding cassette sub-family G member 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834921" }, "gene_names": [ { "name": "ABCG4", "type": "recommended", "evidence": [ { "id": "F1SAH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ] }, { "name": "ABCG4", "type": "synonym", "evidence": [ { "id": "XP_013834921", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834921" } ] } ], "protein_names": [ { "name": "ATP binding cassette subfamily G member 4", "type": "synonym", "evidence": [ { "id": "F1SAH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAH2/entry#names_and_taxonomy" } ] }, { "name": "ATP-binding cassette sub-family G member 4", "type": "synonym", "evidence": [ { "id": "XP_013834921", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834921" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ABCG4", "url": "https://www.uniprot.org/uniprotkb/F1SAH2", "locus": { "chromosome": "9", "start_pos": 46380544, "end_pos": 46364936, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015113", "url": "https://www.ensembl.org/id/ENSSSCG00000015113" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015113", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015113", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03213", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518504", "url": "https://www.ncbi.nlm.nih.gov/gene/100518504", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518504", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518504", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WIDVCIM", "url": "https://omabrowser.org/oma/group/WIDVCIM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAH2", "url": "https://www.orthodb.org/?gene=F1SAH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48041", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48041", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48041:SF75", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48041:SF75", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00005", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00005", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19055", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19055", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013834921", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834921", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEKALEAVGCGLGPGAVAMAVALEDGAEPPMLTTHLKKVENHITEAQRFSHLPKRSAVDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKKEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPLLFRAVQNGLCAMAEKKSSPEKNEVSEPCPPCPPEVDPIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFVSHVVIGVLIGLLYLHIGDDASKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGVILTIYGMERGDLTCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLALRLLAYLVLRYRVKSER", "length": 646, "header": "tr|F1SAH2-1|F1SAH2_PIG Isoform 1 of ATP binding cassette subfamily G member 4 OS=Sus scrofa OX=9823 GN=ABCG4 PE=3 SV=1 CANONICAL=F1SAH2-1" }, "isoforms": [ { "isoform_ac": "F1SAH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAH2/entry#F1SAH2-1", "sequence": { "sequence": "MAEKALEAVGCGLGPGAVAMAVALEDGAEPPMLTTHLKKVENHITEAQRFSHLPKRSAVDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKKEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPLLFRAVQNGLCAMAEKKSSPEKNEVSEPCPPCPPEVDPIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFVSHVVIGVLIGLLYLHIGDDASKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGVILTIYGMERGDLTCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLALRLLAYLVLRYRVKSER", "length": 646, "header": "tr|F1SAH2-1|F1SAH2_PIG Isoform 1 of ATP binding cassette subfamily G member 4 OS=Sus scrofa OX=9823 GN=ABCG4 PE=3 SV=1 CANONICAL=F1SAH2-1" }, "locus": { "chromosome": "9", "start_pos": 46378997, "end_pos": 46365929, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016479.3", "url": "https://www.ensembl.org/id/ENSSSCT00000016479.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016036.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016036.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518504", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518504", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P092-1", "protein_name": "ATP binding cassette subfamily G member 4", "gene_name": "ABCG4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLQRVWGAACSPPRLAQHPPGIAEPSCQRLSGSIPACSLQSSTMAEKGMDPACVSIALEDTVCHAGPPDAPLLTTHLKKVENHITEAQRFSHLPKRSAVNIEFIDLSYSVREGSWWRKRGYKTLLKCLSGKFCQRELIGIMGPSGAGKSTLMNILAGYRETGMKGQILVNGRPRDLRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVNEILTALGLLECSYTRTISLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMRSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPVLFRAVQNGMCTMAEKKSSPDKADSSCPAHCVTDVDHIESHTFATNTSTQFCILFKRTFICILRDTVLTHLRFMSHICIGVLIGLLYLHIGNDAGKVFNNTGFLFFSMLFLMFAALMPTILTFPQEMSVFLREHLNYWYSLKAYYLAKTMADVPFQVICPIAYCSIVYWMTGQPPEATRFLLFSALATATALVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYVSYVRYGFEGVILTIYAMEREDLECLEDFCPFQKPIKILQELDVEEAKLYLDFLILGIFFIILRLLAYLVLRYKVKSER", "length": 685 }, "evidence": [ { "id": "F1SAH2", "url": "https://omabrowser.org/oma/group/F1SAH2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2QJT5-1", "protein_name": "ATP-binding cassette sub-family G member 4 isoform X1", "gene_name": "Abcg4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEKALEAVGCGLGPGAVAMAVALEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRDLRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAHGGRTVICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCTMAEKKSSPEKNEVPAHCPTCPPEMDPIESHTFATSTLTQFCILFRRTFLSILRDTVLTHLRFMSHVLIGVLIGLLYLHIGDDASKVFNNTGFLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALSIATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPAYLQWSSYLSYVRYGFEGLILTIYGMERGHLTCLDVQCPFRDPQIILRELDVEEAKLYMDFLVLGVFFLALRLLAYLVLRYRVKSER", "length": 646 }, "evidence": [ { "id": "F1SAH2", "url": "https://omabrowser.org/oma/group/F1SAH2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A2BFT1-1", "protein_name": "ATP-binding cassette sub-family G member 4", "gene_name": "abcg4a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAEKTLEPGSVSIPMEETKRAGGDAAMLTHLKKVENHITEAQRFSHLPRRSTVDLEFTELSYTIREGPCWRRRGFKALLKCLSGKFCSRELIGIMGPSGAGKSTLMNILAGYRETGMKGQILVNGRPRDLRTFRKMSCYIMQDDMLLPHLTTREAMMVSANLKLNENMEVKKELVNEILTALGLQECAQTRTISLSGGQCKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIYKGTVPYLIPYLKNLGLHCPTYHNPADFIIEVASGEYGDLNPVLFEAVQGGLCSDDSKKNSSDKNDPTTSCPSQCYPDSGYIEKHTFATSTLTQFCILFKRTFITICRDVVLTHLRVMSHLCIGVLIGLLYLNIGNDASKVFNNTGFLFFSMLFLMFAALMPTVLTFPLEMGVFIREHLNYWYSLKAYYLAKTMADIPFQVICPIMYCSIVYWMTEQPPEAGRYLLFMALSTSTALVAQSLGLLIGAASTSLQVATFVGPVSAIPVLLFSGFFVNFDTIPKYLQWSSYVSYVRYGFEGVILSIYGMNRSELECPGIVCKFQKPEEVLQLLDVEDAKLYVDFMVLGVFFLVLRLATYFVLRYKVKSER", "length": 641 }, "evidence": [ { "id": "F1SAH2", "url": "https://omabrowser.org/oma/group/F1SAH2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZCM3-1", "protein_name": "ATP-binding cassette subfamily G member 4", "gene_name": "Abcg4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEKALEAVGCGLGPGAVAMAVALEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRDLRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAHGGRTVICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCTMAEKKSSPEKNEVPAHCPTCPPELDPIESHTFATSTLTQFCILFRRTFLSILRDTVLTHLRFMSHVLIGVLIGLLYLHIGDDASKVFNNTGFLFFSMLFLMFAALMPTVLTCELICLAKMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALSIATALVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGLILTIYGMERGHLTCLEDHCPFRDPQIILHELDVEEAKLYMDFLVLGIFFLALRLLAYLVLRYRVKSER", "length": 650 }, "evidence": [ { "id": "F1SAH2", "url": "https://omabrowser.org/oma/group/F1SAH2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91WA9-1", "protein_name": "ATP-binding cassette subfamily G member 4", "gene_name": "Abcg4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEKALEAVGCGLGPGAVAMAVTLEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAHGGRTVICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCTMAEKKSSPGKNELPAHCPTCPPELDPIESHTFATSTLTQFCILFRRTFLSILRDTVLTHLRFMSHVLIGVLIGLLYLHIGDDASKVFNNTGFLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYTLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALAIATALVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGLILTIYGMERGHLTCLDEQCPFRDPQIILRELDVEEAKLYMDFLVLGIFFLALRLLAYLVLRYRVKSER", "length": 646 }, "evidence": [ { "id": "F1SAH2", "url": "https://omabrowser.org/oma/group/F1SAH2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C6W5-1", "protein_name": "ABC transporter G family member 14", "gene_name": "ABCG14", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MPQNCIAPRPEEDGGVMVQGLPDMSDTQSKSVLAFPTITSQPGLQMSMYPITLKFEEVVYKVKIEQTSQCMGSWKSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGRLSKTFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLDLANGIPPDTQKETSEQEQKTVKETLVSAYEKNISTKLKAELCNAESHSYEYTKAAAKNLKSEQWCTTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLGGLLWWHTPKSHIQDRTALLFFFSVFWGFYPLYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPTAFVFIIYWMGGLKPDPTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGIQYTDDDYYECSKGVWCRVGDFPAIKSMGLNNLWIDVFVMGVMLVGYRLMAYMALHRVKLR", "length": 648 }, "evidence": [ { "id": "F1SAH2", "url": "https://omabrowser.org/oma/group/F1SAH2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9H172-1", "protein_name": "ATP-binding cassette sub-family G member 4", "gene_name": "ABCG4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEKALEAVGCGLGPGAVAMAVTLEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFVELSYSVREGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFRKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPAPCPPCPPEVDPIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYLHIGDDASKVFNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPTYLQWSSYLSYVRYGFEGVILTIYGMERGDLTCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLALRLLAYLVLRYRVKSER", "length": 646 }, "evidence": [ { "id": "F1SAH2", "url": "https://omabrowser.org/oma/group/F1SAH2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "ABC-type sterol transporter activity", "id": "GO:0034041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034041", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of cholesterol efflux", "id": "GO:0010875", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010875", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "cholesterol efflux", "id": "GO:0033344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033344", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "cholesterol homeostasis", "id": "GO:0042632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042632", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "positive regulation of cholesterol biosynthetic process", "id": "GO:0045542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045542", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" }, { "name": "cellular response to high density lipoprotein particle stimulus", "id": "GO:0071403", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071403", "evidence": [ { "database": "UniProtKB", "id": "F1SAH2", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 422, "end_pos": 424, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAH2" }, { "id": "PS50893", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50893" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ABC transporter", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 301, "start_aa": "Ile", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 422, "end_pos": 424 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAJ0-1", "uniprot_ac": "F1SAJ0", "uniprot_id": "F1SAJ0_PIG", "mass": { "chemical_mass": 37244.0, "monoisotopic_mass": 37244.0 }, "refseq": {}, "gene_names": [ { "name": "CENATAC", "type": "recommended", "evidence": [ { "id": "F1SAJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0" } ] } ], "protein_names": [ { "name": "Centrosomal AT-AC splicing factor", "type": "synonym", "evidence": [ { "id": "F1SAJ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAJ0", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CENATAC", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0", "locus": { "chromosome": "9", "start_pos": 46239433, "end_pos": 46230395, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015102", "url": "https://www.ensembl.org/id/ENSSSCG00000015102" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015102", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015102", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR028015", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028015", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MIQDEYT", "url": "https://omabrowser.org/oma/group/MIQDEYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31198:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31198:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14968", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14968", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAJ0", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAJ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPAQRCPLCRQTFFCGRGHVYSRKHQRQLKVALERLLPQVEAARKAIRAAQVERYVPEHERSCWCLCCSCEVRKHLSHGNLTVLHGGLLEHLASPEHKKATNKFWWENKAEFQMKEKFLISPQDYARFKKSMVKGLDSYEEKEDEVIKEMAAQIREAEHSRQEVVRSVLEPQAVPDPEEGSSAPGRWKGTNSQVASASQQSSYLNLPPAPELDWMETGQPLTFIGHQDTPGVGNIHSGATPPWMVQDEEYSSGSQQIGPSYEEFLKEKEKQKLKKLPPDRVGANFDHSSSTGAGWLPSFGRVWNNGRRWQSRHQFKTEAAARNKQQ", "length": 327, "header": "tr|F1SAJ0-1|F1SAJ0_PIG Isoform 1 of Centrosomal AT-AC splicing factor OS=Sus scrofa OX=9823 GN=CENATAC PE=4 SV=2 CANONICAL=F1SAJ0-1" }, "isoforms": [ { "isoform_ac": "F1SAJ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0/entry#F1SAJ0-1", "sequence": { "sequence": "MAPAQRCPLCRQTFFCGRGHVYSRKHQRQLKVALERLLPQVEAARKAIRAAQVERYVPEHERSCWCLCCSCEVRKHLSHGNLTVLHGGLLEHLASPEHKKATNKFWWENKAEFQMKEKFLISPQDYARFKKSMVKGLDSYEEKEDEVIKEMAAQIREAEHSRQEVVRSVLEPQAVPDPEEGSSAPGRWKGTNSQVASASQQSSYLNLPPAPELDWMETGQPLTFIGHQDTPGVGNIHSGATPPWMVQDEEYSSGSQQIGPSYEEFLKEKEKQKLKKLPPDRVGANFDHSSSTGAGWLPSFGRVWNNGRRWQSRHQFKTEAAARNKQQ", "length": 327, "header": "tr|F1SAJ0-1|F1SAJ0_PIG Isoform 1 of Centrosomal AT-AC splicing factor OS=Sus scrofa OX=9823 GN=CENATAC PE=4 SV=2 CANONICAL=F1SAJ0-1" }, "locus": { "chromosome": "9", "start_pos": 46239276, "end_pos": 46230448, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016468.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016468.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016025.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016025.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAJ0", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A095-1", "protein_name": "Centrosomal AT-AC splicing factor", "gene_name": "CCDC84", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAVYHCSLCRRTSFTGRRHLYSAAHRRRLQEALGRLEEEVAAARAAMDGAAVRRYDPAEHERRVWCLCCGRGVRRDGRSGALALPHAGLLQHLAGAEHRRETARFWRENRADAALRERFVVAAEEYARFAAALEKAVGAHEEREEENIRQMAARIREAERRQRDTVRAALEPSTETERCAAPPGCSSAAGPARDASGCAELPGPSMMRTGPNLSWMESGQALTFIGHQETEGRGNVHTGAKPPWLTEEDEEDGSKQQIGPSYEEFLKQKEKQKLKKLPAERVGANFDHTSQTGDSWLPSFGRVWNHGRRWQSRHQFRAESGGKKKKR", "length": 327 }, "evidence": [ { "id": "F1SAJ0", "url": "https://omabrowser.org/oma/group/F1SAJ0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7GVY7-1", "protein_name": "Coiled-coil domain-containing protein 84 isoform X1", "gene_name": "Cenatac", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSVSPNFLLWSRTRLQPQAPAAAEGGSGAAFTAGRSRSQGRSCRPGRTLCPRARSVLLVSVLWLRSTKTPEPRKPDSAARRSAGTSGQVTAEEHPPPRPEHKKATNKFWWENKANAQMKEKFLISPQDYARFKKSMVKSLDSYEEKEDEVIKEMAAQIREIEQSRQEVVRSVLEPQAEPDPDEGSSALGSWEAANGTSSASLAPLSFSHVASSSQQVSHLDPQRVPELDWMETGQHLTFIGHQDTPGVGNIHSGATPPWMIQEEEHSSGNLPIGPSYEEFLKEKEKQKLKKLPPERVGANFDHSSNTSAGWLPSFGRVWNNGRRWQSRHQFKTEAATRSKQSHKGKS", "length": 348 }, "evidence": [ { "id": "F1SAJ0", "url": "https://omabrowser.org/oma/group/F1SAJ0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A553-1", "protein_name": "Centrosomal AT-AC splicing factor", "gene_name": "Cenatac", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPPQRCPLCRQTFFCGRGHVYSHKHQRQLKGALERFLPQVEAARRAVRAAQVECYVPEHDRCCWCPCCGCEVRKHLSHGNLTVLHGGLLEHLASPEHKKATNKFWWENKAHAQVKEKFLISPPDYARFKKSMVKGLDSYEEREDEVIKEMAAQIREVEQSRQEVVRSVLEPQAESDPEEGSSAPESWKAANGLAPLSFSHGASSSQQVSHLDLQPVAELDWMETGPHLTFIGHQDTPGVGNIHSGATPPWMIQEEEHSSGSLPIGPSYEEFLKEKEKQKLKKLPPDRVGANFDHSSNTSAGWLPSFGRVWNNGRRWQSRHQFKTEAAARSRQPHKGKS", "length": 339 }, "evidence": [ { "id": "F1SAJ0", "url": "https://omabrowser.org/oma/group/F1SAJ0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QIL3-1", "protein_name": "Centrosomal AT-AC splicing factor", "gene_name": "cenatac", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGPFYCSICGKTDFSGKGHIFGKSHQSKLKIILVKFTEKVKEARRTFKSPQVEKYGPHHDVKFWCYCCALEVQKHVTDSNITVLYGGLLEHMSTPEHRKNTHKFWWDNKADPKLRDKFIITQEDTERFKSEVSKALKQFEEKEDVFIKQQAVVIRSQEQHRLELLQSLSEPDPELEQPAELEHYSNAHTSRSSHRGSYEPEAQAGPSHEDLHSQWRKPGLSLTFVGYQDSSSSGNVHTGAVPPWLLDDPGDEASEGQQEMKPSVQEFLKHKEQEKLKKLPPNRVGANFDHSSHTDANWLPSFGRVWNSGRRWQSRHQFREEEANTKGKRKRRDDGKFTKKPKDLTNGEK", "length": 349 }, "evidence": [ { "id": "F1SAJ0", "url": "https://omabrowser.org/oma/group/F1SAJ0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F4JRR5-1", "protein_name": "TITAN-like protein", "gene_name": "TTL", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKKPSKKSEIEFCTVCRFHHDQGSRHKYFPRHKSSLSSLLDRFRSKIADVRFFLKNPSVLRPQEQSQNRVWCVFCDEDIVELGSSFACSKAINHFASSDHLKNIKQFLSKNGPAMDCIDEFRISEADVAKWEKKCQSFGNEDASFEGSCGQLSGTSNDIHTKLAFETMDRIKKVPAHHINSYKSNDVMPLQYNTNEYQISLSEIPGVIHNGSYLNMDDSQFPLCDESGNGFGEHSIPCRSKDYSGNGNYCTQENYQVSQDKKQIDGSYNPPGVVGMTSISSSHSTDAGGNVHSGAPPPWLDANDGDFSSVQLNQSDVARFQAKVPGKNRKLNPNRVGAAWAERRKIEIEMEKSGHVTKSNIDPDWLPNFGRVWQSGTRKESRKEFEKEKRKLVKTESISTESEPVKIQPYISKRARRESGE", "length": 421 }, "evidence": [ { "id": "F1SAJ0", "url": "https://omabrowser.org/oma/group/F1SAJ0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q4VA36-1", "protein_name": "Centrosomal AT-AC splicing factor", "gene_name": "Cenatac", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPPQRCPLCRQTFFCGRGHVYSHKHQRQLKGALERLLPQVEAARRAVRAAQVERYVPEHDRCCWCPCCGCEVRKHLSHGNLTVLHGGLLEHLASPEHKKATNKFWWENKANAQMKEKFLISPQDYARFKKSMVKGLDSYEEKEDEVIKEMAAQIREVEQSRQEVVRSVLEPQAESDPEEGSSAPESWKATNGHVASSSQQVSHLALQPVAELDWMETGQQLTFIGHQDTPGIGNIHSGATPPWMIQEEEHSSGSLPIGPSYEEFLKEKEKQKLKKLPPDRVGANFDHSSNTSAGWLPSFGRVWNNGRRWQSRHQFKTEAATRSKQPRKGKS", "length": 332 }, "evidence": [ { "id": "F1SAJ0", "url": "https://omabrowser.org/oma/group/F1SAJ0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86UT8-1", "protein_name": "Centrosomal AT-AC splicing factor", "gene_name": "CENATAC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPAQRCPLCRQTFFCGRGHVYSRKHQRQLKEALERLLPQVEAARKAIRAAQVERYVPEHERCCWCLCCGCEVREHLSHGNLTVLYGGLLEHLASPEHKKATNKFWWENKAEVQMKEKFLVTPQDYARFKKSMVKGLDSYEEKEDKVIKEMAAQIREVEQSRQEVVRSVLEPQAVPDPEEGSSAPRSWKGMNSQVASSLQQPSNLDLPPAPELDWMETGPSLTFIGHQDIPGVGNIHSGATPPWMIQDEEYIAGNQEIGPSYEEFLKEKEKQKLKKLPPDRVGANFDHSSRTSAGWLPSFGRVWNNGRRWQSRHQFKTEAAAMKKQSHTEKS", "length": 332 }, "evidence": [ { "id": "F1SAJ0", "url": "https://omabrowser.org/oma/group/F1SAJ0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SAJ0", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F1SAJ0", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0" } ], "pmid": "" }, { "name": "chromosome separation", "id": "GO:0051304", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051304", "evidence": [ { "database": "UniProtKB", "id": "F1SAJ0", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0" } ], "pmid": "" }, { "name": "regulation of protein catabolic process", "id": "GO:0042176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042176", "evidence": [ { "database": "UniProtKB", "id": "F1SAJ0", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0" } ], "pmid": "" }, { "name": "negative regulation of centrosome duplication", "id": "GO:0010826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010826", "evidence": [ { "database": "UniProtKB", "id": "F1SAJ0", "url": "https://www.uniprot.org/uniprotkb/F1SAJ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAK5-1", "uniprot_ac": "F1SAK5", "uniprot_id": "F1SAK5_PIG", "mass": { "chemical_mass": 70905.0, "monoisotopic_mass": 70905.0 }, "refseq": { "ac": "XP_003127938", "name": "kelch-like protein 14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127938" }, "gene_names": [ { "name": "KLHL14", "type": "recommended", "evidence": [ { "id": "F1SAK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAK5" } ] }, { "name": "KLHL14", "type": "synonym", "evidence": [ { "id": "XP_003127938", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127938" } ] } ], "protein_names": [ { "name": "Kelch-like protein 14", "type": "recommended", "evidence": [ { "id": "F1SAK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAK5/entry#names_and_taxonomy" } ] }, { "name": "Protein interactor of Torsin-1A", "type": "synonym", "evidence": [ { "id": "F1SAK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAK5/entry#names_and_taxonomy" } ] }, { "name": "kelch-like protein 14", "type": "synonym", "evidence": [ { "id": "XP_003127938", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127938" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAK5", "url": "https://www.uniprot.org/uniprotkb/F1SAK5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLHL14", "url": "https://www.uniprot.org/uniprotkb/F1SAK5", "locus": { "chromosome": "6", "start_pos": 116510851, "end_pos": 116611631, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003733", "url": "https://www.ensembl.org/id/ENSSSCG00000003733" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003733", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003733", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18243", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18243", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18453", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18453", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518133", "url": "https://www.ncbi.nlm.nih.gov/gene/100518133", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047027", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047027", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518133", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518133", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RETRMQH", "url": "https://omabrowser.org/oma/group/RETRMQH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAK5", "url": "https://www.orthodb.org/?gene=F1SAK5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127938", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127938", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAK5", "url": "https://www.uniprot.org/uniprotkb/F1SAK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAK5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAK5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRSGDRTSTFDPSHSDNLLHGLNLLWRKQLFCDVTLTAQGQQFHCHKAVLASCSQYFRSLFSSHPPLGGGVGGQDGLGAPKDPQQQQQPPQQPPQQQQPPPQEEPGTPSSSPDDKLLTSPRAINNLVLQGCSSIGLRLVLEYLYTANVTLSLDTVEEVLSVSKILHIPQVTKLCVQFLNDQISVQNYKQVCKIAALHGLEETKKLANKYLVEDVLLLNFEEMRALLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDLMKRLRFALIPAPELVERVQSVDFMRTDPVCQKLLLDAMNYHLMPFRQHCRQSLASRIRSNKKMLLLVGGLPPGPDRLPSNLVQYYDDEKKTWKILTIMPYNSAHHCVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQLPPMQERRASFYACRLDKHLYVIGGRNETGYLSSVECYNLETNEWRYVSSLPQPLAAHAGAVHNGKIYISGGVHNGEYVPWLYCYDPVMDVWARKQDMNTKRAIHTLAVMNDRLYAIGGNHLKGFSHLDVMLVECYDPKGDQWNILQTPILEGRSGPGCAVLDDSIYLVGGYSWSMGAYKSSTICYCPEKGTWTELEGDVAEPLAGPACATVILPACVPYNK", "length": 630, "header": "tr|F1SAK5-1|F1SAK5_PIG Isoform 1 of Kelch-like protein 14 OS=Sus scrofa OX=9823 GN=KLHL14 PE=4 SV=1 CANONICAL=F1SAK5-1" }, "isoforms": [ { "isoform_ac": "F1SAK5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAK5/entry#F1SAK5-1", "sequence": { "sequence": "MSRSGDRTSTFDPSHSDNLLHGLNLLWRKQLFCDVTLTAQGQQFHCHKAVLASCSQYFRSLFSSHPPLGGGVGGQDGLGAPKDPQQQQQPPQQPPQQQQPPPQEEPGTPSSSPDDKLLTSPRAINNLVLQGCSSIGLRLVLEYLYTANVTLSLDTVEEVLSVSKILHIPQVTKLCVQFLNDQISVQNYKQVCKIAALHGLEETKKLANKYLVEDVLLLNFEEMRALLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDLMKRLRFALIPAPELVERVQSVDFMRTDPVCQKLLLDAMNYHLMPFRQHCRQSLASRIRSNKKMLLLVGGLPPGPDRLPSNLVQYYDDEKKTWKILTIMPYNSAHHCVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQLPPMQERRASFYACRLDKHLYVIGGRNETGYLSSVECYNLETNEWRYVSSLPQPLAAHAGAVHNGKIYISGGVHNGEYVPWLYCYDPVMDVWARKQDMNTKRAIHTLAVMNDRLYAIGGNHLKGFSHLDVMLVECYDPKGDQWNILQTPILEGRSGPGCAVLDDSIYLVGGYSWSMGAYKSSTICYCPEKGTWTELEGDVAEPLAGPACATVILPACVPYNK", "length": 630, "header": "tr|F1SAK5-1|F1SAK5_PIG Isoform 1 of Kelch-like protein 14 OS=Sus scrofa OX=9823 GN=KLHL14 PE=4 SV=1 CANONICAL=F1SAK5-1" }, "locus": { "chromosome": "6", "start_pos": 116610644, "end_pos": 116512863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004133.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004133.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004040.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004040.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAK5", "url": "https://www.uniprot.org/uniprotkb/F1SAK5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518133", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518133", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PQZ9-1", "protein_name": "Kelch-like protein 14", "gene_name": "KLHL14", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSRSGDRTSTFDPSHSDNLLHGLNLLWRKQLFCDVTLTAQGQQFHCHKAVLASCSQYFRSLFSSGGGHPHALALGPGAQDGLGGAPPKEPPPPPQEEPGTPSSSPEDKLLASPRAINNLVLQGCSSIGLRLVLEYLYTANVTLSLDTVEEVLSVSKILHIPQVTKLCVQFLNDQISVQNYKQVCKIAALHGLEETKKLANKYLVEDVLVLNFEEMRALLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDLMKRLRFALIPAPELVERVQSVDFMRTDPVCQKLLLDAMNYHLMPFRQHCRQSLASRIRSNKKMLLLVGGLPPGPDRLPSNLVQYYDDEKKTWKILTIMPYNSAHHCVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQLPPMQERRASFYACRLDKNLYVIGGRNETGYLSSVECYNLETNEWRYVSSLPQPLAAHAGAVHNGKIYISGGVHNGEYVPWLYCYDPVMDVWARKQDMNTKRAIHTLAVMNDRLYAIGGNHLKGFSHLDVMLVECYDPKGDQWNILQTPILEGRSGPGCAVLDDSIYLVGGYSWSMGAYKSSTICYSPEKGTWTELEGDVAEPLAGPACSTVILPACVPYNK", "length": 622 }, "evidence": [ { "id": "F1SAK5", "url": "https://omabrowser.org/oma/group/F1SAK5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8M1PS01-1", "protein_name": "Kelch-like protein 14", "gene_name": "klhl14", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGGVRSPEVMSRSGDRTSTFDPTHSDTLLHGLNLLWRKQLFCDVTLTAQGQQFHCHRAVLASCSQYFRSLFSTHSMLSREDGLAAKDQGSSGTPSSSPDDKLLPSPHSTINNLVLQGCSSIGLRLVLEYLYTANVTLSLDTVEEVLSVSKILNIPQITKLSVQFLNDQISVQNYKQICKIAALHGLDETKKLANKYLVEDVLLLNFEEMCAMLDALPPPVESELALFQMSVLWLEHDRETRMHYAPDLMKRLRFALIPAPELVERVQSVDFMRSDPVCQKLLLDAMNYHLMPFRQHCRQTTASRIRSNKRMLLLVGGLPPGPDRLPSNLVQYYDDEKKTWKILTIMPYNSAHHCVVEVENFLLLLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQLPPMQERRASFFACCLDKHLYVVGGRNETGYLSSVEAYNLETNEWNYVSSLPQPLAAHAGAVHNGKIYISGGVHNGEYVSWLYCYDPVMDVWARKQDMNTKRAIHALAGMNDRLYAIGGNHLKGFSHLDVMLVECYDPKADQWSILQTPILEGRSGPGCAVLDDSIYLVGGYSWSMGAYKSSTICYSPEKATWTEMEGEVAEPLAGPACATVILPACLPFNK", "length": 616 }, "evidence": [ { "id": "F1SAK5", "url": "https://omabrowser.org/oma/group/F1SAK5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZYQ7-1", "protein_name": "Kelch-like protein 14", "gene_name": "Klhl14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRSGDRTSTFDPSHSDNLLHGLNLLWRKQLFCDVTLTAQGQQFHCHKAVLASCSQYFRSLFSSHPPLGGGVGGQDGLGAPKDQQQQQQPQQQPSQQQQQPPQEEPGTPSSSPDDKLLTSPRAINNLVLQGCSSIGLRLVLEYLYTANVTLSLDTVEEVLSVSKILHIPQVTKLCVQFLNDQISVQNYKQVCKIAALHGLEETKKLANKYLVEDVLLLNFEEMRALLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDLMKRLRFALIPAPELVERVQSVDFMRTDPVCQKLLLDAMNYHLMPFRQHCRQSLASRIRSNKKMLLLVGGLPPGPDRLPSNLVQYYDDEKKTWKILTIMPYNSAHHCVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQLPPMQERRASFYACRLDKHLYVIGGRNETGYLSSVECYNLDTNEWRYVSSLPQPLAAHAGAVHNGKIYISGGVHNGEYVPWLYCYDPVMDVWARKQDMNTKRAIHTLAVMNDRLYAIGGNHLKGFSHLDVMLVECYDPKGDQWNILQTPILEGRSGPGCAVLDDSIYLVGGYSWSMGAYKSSTICYCPEKGTWTELEGDVAEPLAGPACATVILPACVPYNK", "length": 630 }, "evidence": [ { "id": "F1SAK5", "url": "https://omabrowser.org/oma/group/F1SAK5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BPK1-1", "protein_name": "Kelch-like protein 14", "gene_name": "KLHL14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRSGDRTSTFDPSHSDNLLHGLNLLWRKQLFCDVTLTAQGQQFHCHKAVLASCSQYFRSLFSSHPPLGGGVGGQDGLGAPKDPPQQPPQQQPPPPPAQEEPGTPSSSPDDKLLTSPRAINNLVLQGCSSIGLRLVLEYLYTANVTLSLDTVEEVLSVSKILHIPQVTKLCVQFLNDQISVQNYKQVCKIAALHGLEETKKLANKYLVEDVLLLNFEEMRALLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDLMKRLRFALIPAPELVERVQSVDFMRTDPVCQKLLLDAMNYHLMPFRQHCRQSLASRIRSNKKMLLLVGGLPPGPDRLPSNLVQYYDDEKKTWKILTIMPYNSAHHCVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQLPPMQERRASFYACRLDKHLYVIGGRNETGYLSSVECYNLETNEWRYVSSLPQPLAAHAGAVHNGKIYISGGVHNGEYVPWLYCYDPVMDVWARKQDMNTKRAIHTLAVMNDRLYAIGGNHLKGFSHLDVMLVECYDPKGDQWNILQTPILEGRSGPGCAVLDDSIYLVGGYSWSMGAYKSSTICYCPEKGSWTELEGDVAEPLAGPACATVILPACVPYNK", "length": 626 }, "evidence": [ { "id": "F1SAK5", "url": "https://omabrowser.org/oma/group/F1SAK5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q69ZK5-1", "protein_name": "Kelch-like protein 14", "gene_name": "Klhl14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRSGDRTSTFDPSHSDNLLHGLNLLWRKQLFCDVTLTAQGQQFHCHKAVLASCSQYFRSLFSSHPPLGGGVGGQDGLGAPKDQQQQQQPQQQPPQQQQPPPQEEPGTPSSSPDDKLLTSPRAINNLVLQGCSSIGLRLVLEYLYTANVTLSLDTVEEVLSVSKILHIPQVTKLCVQFLNDQISVQNYKQVCKIAALHGLEETKKLANKYLVEDVLLLNFEEMRALLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDLMKRLRFALIPAPELVERVQSVDFMRTDPVCQKLLLDAMNYHLMPFRQHCRQSLASRIRSNKKMLLLVGGLPPGPDRLPSNLVQYYDDEKKTWKILTIMPYNSAHHCVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQLPPMQERRASFYACRLDKHLYVIGGRNETGYLSSVECYNLDTNEWRYVSSLPQPLAAHAGAVHNGKIYISGGVHNGEYVPWLYCYDPVMDVWARKQDMNTKRAIHTLAVMNDRLYAIGGNHLKGFSHLDVMLVECYDPKGDQWNILQTPILEGRSGPGCAVLDDSIYLVGGYSWSMGAYKSSTICYCPEKGTWTELEGDVAEPLAGPACATVILPACVPYNK", "length": 630 }, "evidence": [ { "id": "F1SAK5", "url": "https://omabrowser.org/oma/group/F1SAK5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P2G3-1", "protein_name": "Kelch-like protein 14", "gene_name": "KLHL14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRSGDRTSTFDPSHSDNLLHGLNLLWRKQLFCDVTLTAQGQQFHCHKAVLASCSQYFRSLFSSHPPLGGGVGGQDGLGAPKDQQQPPQQQPSQQQQPPPQEEPGTPSSSPDDKLLTSPRAINNLVLQGCSSIGLRLVLEYLYTANVTLSLDTVEEVLSVSKILHIPQVTKLCVQFLNDQISVQNYKQVCKIAALHGLEETKKLANKYLVEDVLLLNFEEMRALLDSLPPPVESELALFQMSVLWLEHDRETRMQYAPDLMKRLRFALIPAPELVERVQSVDFMRTDPVCQKLLLDAMNYHLMPFRQHCRQSLASRIRSNKKMLLLVGGLPPGPDRLPSNLVQYYDDEKKTWKILTIMPYNSAHHCVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQLPPMQERRASFYACRLDKHLYVIGGRNETGYLSSVECYNLETNEWRYVSSLPQPLAAHAGAVHNGKIYISGGVHNGEYVPWLYCYDPVMDVWARKQDMNTKRAIHTLAVMNDRLYAIGGNHLKGFSHLDVMLVECYDPKGDQWNILQTPILEGRSGPGCAVLDDSIYLVGGYSWSMGAYKSSTICYCPEKGTWTELEGDVAEPLAGPACVTVILPSCVPYNK", "length": 628 }, "evidence": [ { "id": "F1SAK5", "url": "https://omabrowser.org/oma/group/F1SAK5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SAK5", "url": "https://www.uniprot.org/uniprotkb/F1SAK5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SAK5", "url": "https://www.uniprot.org/uniprotkb/F1SAK5" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "F1SAK5", "url": "https://www.uniprot.org/uniprotkb/F1SAK5" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SAK5", "url": "https://www.uniprot.org/uniprotkb/F1SAK5" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "F1SAK5", "url": "https://www.uniprot.org/uniprotkb/F1SAK5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" }, { "start_pos": 435, "end_pos": 437, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAK5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAK5" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 153, "start_aa": "Cys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 }, { "start_pos": 435, "end_pos": 437 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAL2-1", "uniprot_ac": "F1SAL2", "uniprot_id": "F1SAL2_PIG", "mass": { "chemical_mass": 24292.0, "monoisotopic_mass": 24292.0 }, "refseq": { "ac": "XP_003129961", "name": "sodium channel subunit beta-2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129961" }, "gene_names": [ { "name": "SCN2B", "type": "recommended", "evidence": [ { "id": "F1SAL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ] }, { "name": "SCN2B", "type": "synonym", "evidence": [ { "id": "XP_003129961", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129961" } ] } ], "protein_names": [ { "name": "Sodium channel regulatory subunit beta-2", "type": "recommended", "evidence": [ { "id": "F1SAL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAL2/entry#names_and_taxonomy" } ] }, { "name": "sodium channel subunit beta-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003129961", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129961" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCN2B", "url": "https://www.uniprot.org/uniprotkb/F1SAL2", "locus": { "chromosome": "9", "start_pos": 45484998, "end_pos": 45498465, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021651", "url": "https://www.ensembl.org/id/ENSSSCG00000021651" } ] } } ], "crossref": [ { "id": "F1SAL2", "url": "https://alphafold.ebi.ac.uk/entry/F1SAL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021651", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021651", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05715", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05715", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514594", "url": "https://www.ncbi.nlm.nih.gov/gene/100514594", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514594", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514594", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RLACTFN", "url": "https://omabrowser.org/oma/group/RLACTFN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAL2", "url": "https://www.orthodb.org/?gene=F1SAL2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13869", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13869", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13869:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13869:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129961", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129961", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHKDAWLPRPAFGLTGLSLFFSLVPPGQSMEVTVPTTLNVLNGSDARLSCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFRDRVEFSGNPSKYDVSVTLRNVQLEDEGTYNCYIMNPPDRHRGHGKIYLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEEEGKTDGEGNADDGTK", "length": 215, "header": "tr|F1SAL2-1|F1SAL2_PIG Isoform 1 of Sodium channel regulatory subunit beta-2 OS=Sus scrofa OX=9823 GN=SCN2B PE=3 SV=1 CANONICAL=F1SAL2-1" }, "isoforms": [ { "isoform_ac": "F1SAL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAL2/entry#F1SAL2-1", "sequence": { "sequence": "MHKDAWLPRPAFGLTGLSLFFSLVPPGQSMEVTVPTTLNVLNGSDARLSCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFRDRVEFSGNPSKYDVSVTLRNVQLEDEGTYNCYIMNPPDRHRGHGKIYLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEEEGKTDGEGNADDGTK", "length": 215, "header": "tr|F1SAL2-1|F1SAL2_PIG Isoform 1 of Sodium channel regulatory subunit beta-2 OS=Sus scrofa OX=9823 GN=SCN2B PE=3 SV=1 CANONICAL=F1SAL2-1" }, "locus": { "chromosome": "9", "start_pos": 45498257, "end_pos": 45488742, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027315.2", "url": "https://www.ensembl.org/id/ENSSSCT00000027315.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021879.1", "url": "https://www.ensembl.org/id/ENSSSCP00000021879.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514594", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514594", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HSD3-1", "protein_name": "Sodium channel regulatory subunit beta-2", "gene_name": "Scn2b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHRDAWLPRPAFSLTGLSLFFTLVPPGRSMEVTVPTTLSVLNGSDTRLPCTFNSCYTVNHKQFSLNWTYQECSNCSEEMFLQFRMKIINLKLERFGDRVEFSGNPSKYDVSVTLKNVQLEDEGIYNCYVTNPPDRHRGHGKIYLQVLLEVPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEEEGKTDGEGNVEEGAK", "length": 215 }, "evidence": [ { "id": "F1SAL2", "url": "https://omabrowser.org/oma/group/F1SAL2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1B757-1", "protein_name": "Sodium channel regulatory subunit beta-2", "gene_name": "SCN2B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MHRNAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPNTLNVLNGSDARLSCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFRDRVEFSGNPSKYDVSVTLKKVQLEDEGTYNCYIMNPPDRHRGHGKIYLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEEEGKTDGEGNADDGAK", "length": 215 }, "evidence": [ { "id": "F1SAL2", "url": "https://omabrowser.org/oma/group/F1SAL2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O60939-1", "protein_name": "Sodium channel regulatory subunit beta-2", "gene_name": "SCN2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTVPATLNVLNGSDARLPCTFNSCYTVNHKQFSLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKYDVSVMLRNVQPEDEGIYNCYIMNPPDRHRGHGKIHLQVLMEEPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEEEGKTDGEGNPDDGAK", "length": 215 }, "evidence": [ { "id": "F1SAL2", "url": "https://omabrowser.org/oma/group/F1SAL2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P54900-1", "protein_name": "Sodium channel regulatory subunit beta-2", "gene_name": "Scn2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHRDAWLPRPAFSLTGLSLFFSLVPSGRSMEVTVPTTLSVLNGSDTRLPCTFNSCYTVNHKQFSLNWTYQECSNCSEEMFLQFRMKIINLKLERFGDRVEFSGNPSKYDVSVTLKNVQLEDEGIYNCYITNPPDRHRGHGKIYLQVLLEVPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEEEGKTDGEGNAEDGAK", "length": 215 }, "evidence": [ { "id": "F1SAL2", "url": "https://omabrowser.org/oma/group/F1SAL2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q56A07-1", "protein_name": "Sodium channel regulatory subunit beta-2", "gene_name": "Scn2b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRDAWLPRPAFSLTGLSLFFSLVPPGRSMEVTAPTTLSVLNGSDTRLPCTFNSCYTVNHKQFSLNWTYQECNNCTEEMFLQFRMKIINLKLERFGDRVEFSGNPSKYDVSVTLKNVQLEDEGIYNCYITNPPDRHRGHGKIYLQVLLEVPPERDSTVAVIVGASVGGFLAVVILVLMVVKCVRRKKEQKLSTDDLKTEEEGKMDGEGNAEDGTK", "length": 215 }, "evidence": [ { "id": "F1SAL2", "url": "https://omabrowser.org/oma/group/F1SAL2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization", "id": "GO:1902282", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902282", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "sodium channel regulator activity", "id": "GO:0017080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017080", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "voltage-gated sodium channel activity involved in cardiac muscle cell action potential", "id": "GO:0086006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0086006", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "T-tubule", "id": "GO:0030315", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030315", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "voltage-gated sodium channel complex", "id": "GO:0001518", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001518", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of heart rate by cardiac conduction", "id": "GO:0086091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0086091", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "cardiac conduction", "id": "GO:0061337", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061337", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "positive regulation of sodium ion transport", "id": "GO:0010765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010765", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "membrane depolarization during cardiac muscle cell action potential", "id": "GO:0086012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0086012", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "cardiac muscle cell action potential involved in contraction", "id": "GO:0086002", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0086002", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" }, { "name": "regulation of atrial cardiac muscle cell membrane depolarization", "id": "GO:0060371", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060371", "evidence": [ { "database": "UniProtKB", "id": "F1SAL2", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAL2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 215, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAL2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAL2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAL2" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 131, "start_aa": "Pro", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 42, "end_pos": 44 }, { "start_pos": 66, "end_pos": 68 }, { "start_pos": 74, "end_pos": 76 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAL5-1", "uniprot_ac": "F1SAL5", "uniprot_id": "F1SAL5_PIG", "mass": { "chemical_mass": 96382.0, "monoisotopic_mass": 96382.0 }, "refseq": { "ac": "XP_020951876", "name": "GRB2-associated and regulator of MAPK protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951876" }, "gene_names": [ { "name": "GAREM1", "type": "recommended", "evidence": [ { "id": "F1SAL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" } ] }, { "name": "GAREM1", "type": "synonym", "evidence": [ { "id": "XP_020951876", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951876" } ] } ], "protein_names": [ { "name": "GRB2-associated and regulator of MAPK1", "type": "recommended", "evidence": [ { "id": "F1SAL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAL5/entry#names_and_taxonomy" } ] }, { "name": "GRB2-associated and regulator of MAPK protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951876", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951876" } ] } ], "function": [ { "annotation": "Acts as an adapter protein that plays a role in intracellular signaling cascades triggered either by the cell surface activated epidermal growth factor receptor and/or cytoplasmic protein tyrosine kinases. Promotes activation of the MAPK/ERK signaling pathway. Plays a role in the regulation of cell proliferation.", "evidence": [ { "database": "UniProtKB", "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5#function" }, { "database": "UniProtKB", "id": "ARBA00055003", "url": "https://www.uniprot.org/uniprotkb/ARBA00055003#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GAREM1", "url": "https://www.uniprot.org/uniprotkb/F1SAL5", "locus": { "chromosome": "6", "start_pos": 116100372, "end_pos": 116325133, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003731", "url": "https://www.ensembl.org/id/ENSSSCG00000003731" } ] } } ], "crossref": [ { "id": "F1SAL5", "url": "https://alphafold.ebi.ac.uk/entry/F1SAL5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003731", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003731", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09525", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09525", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100737982", "url": "https://www.ncbi.nlm.nih.gov/gene/100737982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052281", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052281", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SAL5", "url": "https://www.orthodb.org/?gene=F1SAL5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14454:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14454:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020951876", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951876", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAL5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPAPSLGCSLKDVKWSSVAVPLDLLVSTYRLPQIARLDSGECIEGLRENDYLLIHSCRQWTTITAHSLEEGHYVIGPKIEIPVHYAGQFKLLEQDRDIKEPVQYFNSVEEVAKAFPERVYVMEEITFNVKVASGECNEDTEVYNITLCTGDELTLMGQAEILYAKTFKEKSRLNTIFKKIGKLNSISKLGKGKMPCLICMNHRTNESISLPFQCKGRFSTRSPLELQMQEGEHTIRNIVEKTRLPVNVTVPSPPPRNPYDLHFIREGHRYKFVNIQTKTVVVCCVLRNNKILPMHFPLHLTVPKFSLPEHLVKGEEWPETLVHHWLGICQEQFDIDEYSRAVRDVKTDWNEDCKSPKKGRCTGHNHVPNSLSYARDELTQSFHRLSVCVYGNNLHGNSEVNLHGCRDLGGEWAPFPHDILPYQDSGDSGSDYLFPEASEESVGVPGKSELPYEELWLEEGKPSHQPLTRSLSEKSRCDQFRGYVRSKCAASPLPGPGTLGAAMKSSEITLPPPPVPPKSEAVREECRLLNAPPVPPRSAKPQSTSPSVPPRTARPARQQTRSPSPTLSYYSSGLHDISVTKSDTSPPQSAPVSCYPCNRVKTDSVDPKSPIGSPSAEALSSRLSWPNPYSGASETQTRSDFLLDPSRSYSYPRQKTPGTPKRSCPVPLALDGCEPPSPIAGAAGLGGGAPGCPKSASYSLESTEEKTLAAGTAKQSASCPALPPRAPKPVEEKAAPDACPLPLKIDGAEEDPKSGSPDLSEDAYFVAKGTQDIFSVPYPFSSPLHLQLAPRSCGDGSPWQPPADLSGLSIEEVSKSLRFIGLSEDVIAFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKILQFINGWRPKI", "length": 874, "header": "tr|F1SAL5-1|F1SAL5_PIG Isoform 1 of GRB2-associated and regulator of MAPK1 OS=Sus scrofa OX=9823 GN=GAREM1 PE=3 SV=5 CANONICAL=F1SAL5-1" }, "isoforms": [ { "isoform_ac": "F1SAL5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAL5/entry#F1SAL5-1", "sequence": { "sequence": "MDPAPSLGCSLKDVKWSSVAVPLDLLVSTYRLPQIARLDSGECIEGLRENDYLLIHSCRQWTTITAHSLEEGHYVIGPKIEIPVHYAGQFKLLEQDRDIKEPVQYFNSVEEVAKAFPERVYVMEEITFNVKVASGECNEDTEVYNITLCTGDELTLMGQAEILYAKTFKEKSRLNTIFKKIGKLNSISKLGKGKMPCLICMNHRTNESISLPFQCKGRFSTRSPLELQMQEGEHTIRNIVEKTRLPVNVTVPSPPPRNPYDLHFIREGHRYKFVNIQTKTVVVCCVLRNNKILPMHFPLHLTVPKFSLPEHLVKGEEWPETLVHHWLGICQEQFDIDEYSRAVRDVKTDWNEDCKSPKKGRCTGHNHVPNSLSYARDELTQSFHRLSVCVYGNNLHGNSEVNLHGCRDLGGEWAPFPHDILPYQDSGDSGSDYLFPEASEESVGVPGKSELPYEELWLEEGKPSHQPLTRSLSEKSRCDQFRGYVRSKCAASPLPGPGTLGAAMKSSEITLPPPPVPPKSEAVREECRLLNAPPVPPRSAKPQSTSPSVPPRTARPARQQTRSPSPTLSYYSSGLHDISVTKSDTSPPQSAPVSCYPCNRVKTDSVDPKSPIGSPSAEALSSRLSWPNPYSGASETQTRSDFLLDPSRSYSYPRQKTPGTPKRSCPVPLALDGCEPPSPIAGAAGLGGGAPGCPKSASYSLESTEEKTLAAGTAKQSASCPALPPRAPKPVEEKAAPDACPLPLKIDGAEEDPKSGSPDLSEDAYFVAKGTQDIFSVPYPFSSPLHLQLAPRSCGDGSPWQPPADLSGLSIEEVSKSLRFIGLSEDVIAFFVTEKIDGNLLVQLTEEILSEDFKLSKLQVKKILQFINGWRPKI", "length": 874, "header": "tr|F1SAL5-1|F1SAL5_PIG Isoform 1 of GRB2-associated and regulator of MAPK1 OS=Sus scrofa OX=9823 GN=GAREM1 PE=3 SV=5 CANONICAL=F1SAL5-1" }, "locus": { "chromosome": "6", "start_pos": 116324701, "end_pos": 116104837, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004131.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004131.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004038.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004038.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" } ], "pmid": "" }, { "name": "positive regulation of ERK1 and ERK2 cascade", "id": "GO:0070374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070374", "evidence": [ { "database": "UniProtKB", "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" } ], "pmid": "" }, { "name": "epidermal growth factor receptor signaling pathway", "id": "GO:0007173", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007173", "evidence": [ { "database": "UniProtKB", "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" } ], "pmid": "" }, { "name": "positive regulation of cell division", "id": "GO:0051781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051781", "evidence": [ { "database": "UniProtKB", "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" } ], "pmid": "" }, { "name": "cellular response to epidermal growth factor stimulus", "id": "GO:0071364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071364", "evidence": [ { "database": "UniProtKB", "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "proline-rich region binding", "id": "GO:0070064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070064", "evidence": [ { "database": "UniProtKB", "id": "F1SAL5", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAL5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 874, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAL5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAL5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAL5" }, { "id": "PF12736", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12736" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CABIT", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 305, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 248, "end_pos": 250 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAM0-1", "uniprot_ac": "F1SAM0", "uniprot_id": "F1SAM0_PIG", "mass": { "chemical_mass": 99847.0, "monoisotopic_mass": 99847.0 }, "refseq": {}, "gene_names": [ { "name": "DSC1", "type": "recommended", "evidence": [ { "id": "F1SAM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ] } ], "protein_names": [ { "name": "Desmocollin 1", "type": "synonym", "evidence": [ { "id": "F1SAM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAM0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0#function" }, { "database": "UniProtKB", "id": "RU004358", "url": "https://www.uniprot.org/uniprotkb/RU004358#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DSC1", "url": "https://www.uniprot.org/uniprotkb/F1SAM0", "locus": { "chromosome": "6", "start_pos": 115039722, "end_pos": 115076097, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003726", "url": "https://www.ensembl.org/id/ENSSSCG00000003726" } ] } } ], "crossref": [ { "id": "F1SAM0", "url": "https://alphafold.ebi.ac.uk/entry/F1SAM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003726", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003726", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515669", "url": "https://www.ncbi.nlm.nih.gov/gene/100515669", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050971", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050971", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VTICRHE", "url": "https://omabrowser.org/oma/group/VTICRHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAM2", "url": "https://www.orthodb.org/?gene=F1SAM2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24025", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24025", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24025:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24025:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAM0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAM0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAM2", "url": "https://www.uniprot.org/uniprotkb/F1SAM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVASAAPGSDFCKQLLFSLLVLILFCDACQKISLQVPSHLPAEALVGKVNLKECLQSASLIQSSDPDFRIQEDGSIYTTHDLMLSSEKKSFSILLSDTQREEQKKIAIVLEAGGQKGPERHLEDTVLKRSKRRWAPIPCSLMENSLGPFPQHVQQVQSDAAQNYTIFYSISGPGVDKEPFNLFFINKDTGDIFCTRSIDREQYEQFPLYAYATTADGYAPEYPLPLLFKVEDDNDNAPYFENKVTIFSVPENCRTGTSVGKVTAIDHDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPLLDREKCDTYKLIMEVRDMGGQPFGLFNTGTITISLEDENDNSPYFTETSYFTEVEENRIDVEILRMAVRDQDLPNTPHSKAIYKILQGNENGNFKISTDPNTNEGVLCVVKPLNYELNRQIVLQIGVLNEAQFSKAANAQTPTMCTTTVTVKIKDLDEGPECQPSVKVIQSKDGLPAGKELLGYKAVDPEKGSSEGLRYKKIGDEDNWFEINEHTGNLKTVKVLDRESKFVKNNQYNVSVIAMDADGRSCTGTLVVFLEDDNDHPPDIREKEVTICRHDKDFAVLEPVDLDGPDNGPPFQFFLDNAASKLWTIETKDGKTAILRERQNLDYDTYTVPIQVKDRHGFAARHILAVRVCDCTTPSDCKMTPKGVRDIKPSNVILGRWAILAMVLGSALLLCILFTCFCVTAKKTVKKCFPEDVAQQNLIVSNTEGPGEEVMEANMRLPTQTCNICDTSVSVGTLGGQGVKTQQSFEMVKGGYTLDSSKGGGHQTLESVKGLGQGGMDTGRYGYTEWHSFTQPRLGEVYLCGQDEEHKHSEDYVRSYNYEGKGSVAGSVGCCSDRQEEEGLEFLDHLEPKFRMLAKTCVKK", "length": 896, "header": "tr|F1SAM0-1|F1SAM0_PIG Isoform 1 of Desmocollin 1 OS=Sus scrofa OX=9823 GN=DSC1 PE=4 SV=3 CANONICAL=F1SAM0-1" }, "isoforms": [ { "isoform_ac": "F1SAM0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAM0/entry#F1SAM0-1", "sequence": { "sequence": "MAVASAAPGSDFCKQLLFSLLVLILFCDACQKISLQVPSHLPAEALVGKVNLKECLQSASLIQSSDPDFRIQEDGSIYTTHDLMLSSEKKSFSILLSDTQREEQKKIAIVLEAGGQKGPERHLEDTVLKRSKRRWAPIPCSLMENSLGPFPQHVQQVQSDAAQNYTIFYSISGPGVDKEPFNLFFINKDTGDIFCTRSIDREQYEQFPLYAYATTADGYAPEYPLPLLFKVEDDNDNAPYFENKVTIFSVPENCRTGTSVGKVTAIDHDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPLLDREKCDTYKLIMEVRDMGGQPFGLFNTGTITISLEDENDNSPYFTETSYFTEVEENRIDVEILRMAVRDQDLPNTPHSKAIYKILQGNENGNFKISTDPNTNEGVLCVVKPLNYELNRQIVLQIGVLNEAQFSKAANAQTPTMCTTTVTVKIKDLDEGPECQPSVKVIQSKDGLPAGKELLGYKAVDPEKGSSEGLRYKKIGDEDNWFEINEHTGNLKTVKVLDRESKFVKNNQYNVSVIAMDADGRSCTGTLVVFLEDDNDHPPDIREKEVTICRHDKDFAVLEPVDLDGPDNGPPFQFFLDNAASKLWTIETKDGKTAILRERQNLDYDTYTVPIQVKDRHGFAARHILAVRVCDCTTPSDCKMTPKGVRDIKPSNVILGRWAILAMVLGSALLLCILFTCFCVTAKKTVKKCFPEDVAQQNLIVSNTEGPGEEVMEANMRLPTQTCNICDTSVSVGTLGGQGVKTQQSFEMVKGGYTLDSSKGGGHQTLESVKGLGQGGMDTGRYGYTEWHSFTQPRLGEVYLCGQDEEHKHSEDYVRSYNYEGKGSVAGSVGCCSDRQEEEGLEFLDHLEPKFRMLAKTCVKK", "length": 896, "header": "tr|F1SAM0-1|F1SAM0_PIG Isoform 1 of Desmocollin 1 OS=Sus scrofa OX=9823 GN=DSC1 PE=4 SV=3 CANONICAL=F1SAM0-1" }, "locus": { "chromosome": "6", "start_pos": 115075674, "end_pos": 115042647, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004126.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004126.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004033.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004033.3" } ] } }, { "isoform_ac": "F1SAM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAM0/entry#F1SAM2-1", "sequence": { "sequence": "MAVASAAPGSDFCKQLLFSLLVLILFCDACQKISLQVPSHLPAEALVGKVNLKECLQSASLIQSSDPDFRIQEDGSIYTTHDLMLSSEKKSFSILLSDTQREEQKKIAIVLEAGGQKGPERHLEDTVLKRSKRRWAPIPCSLMENSLGPFPQHVQQVQSDAAQNYTIFYSISGPGVDKEPFNLFFINKDTGDIFCTRSIDREQYEQFPLYAYATTADGYAPEYPLPLLFKVEDDNDNAPYFENKVTIFSVPENCRTGTSVGKVTAIDHDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPLLDREKCDTYKLIMEVRDMGGQPFGLFNTGTITISLEDENDNSPYFTETSYFTEVEENRIDVEILRMAVRDQDLPNTPHSKAIYKILQGNENGNFKISTDPNTNEGVLCVVKPLNYELNRQIVLQIGVLNEAQFSKAANAQTPTMCTTTVTVKIKDLDEGPECQPSVKVIQSKDGLPAGKELLGYKAVDPEKGSSEGLRYKKIGDEDNWFEINEHTGNLKTVKVLDRESKFVKNNQYNVSVIAMDADGRSCTGTLVVFLEDDNDHPPDIREKEVTICRHDKDFAVLEPVDLDGPDNGPPFQFFLDNAASKLWTIETKDGKTAILRERQNLDYDTYTVPIQVKDRHGFAARHILAVRVCDCTTPSDCKMTPKGVRDIKPSNVILGRWAILAMVLGSALLLCILFTCFCVTAKKTVKKCFPEDVAQQNLIVSNTEGPGEEVMEANMRLPTQTCNICDTSVSVGTLGGQGVKTQQSFEMVKGGYTLDSSKGGGHQTLESVKGLGQGGMDTGRYGYTEWHSFTQPRLGEESIRGHTLIKN", "length": 843, "header": "tr|F1SAM2-1|F1SAM0_PIG Computationally mapped isoform of Desmocollin 1 OS=Sus scrofa OX=9823 GN=DSC1 PE=4 SV=3 CANONICAL=F1SAM0-1" }, "locus": { "chromosome": "6", "start_pos": 115075674, "end_pos": 115042939, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004124.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004124.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004031.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004031.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAM2", "url": "https://www.uniprot.org/uniprotkb/F1SAM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2KA90-1", "protein_name": "Desmocollin 1", "gene_name": "Dsc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAACAAPGSTFSKQLLFLLLVLVLLCNACQKVSLQVPSHLKAEKPIGKVNLEECLKSPSLILSSDPAFRILEDGTIYATHDLLLSSEKRGFSILLSDSQGQEQKKLEIVLSAREKKAFRKRHTKEPVHKRSKRRWAPIPCSLMENSLGPFPQHVQRIQSDFSQNYSIFYSISGPGVDKEPFNLFYIEKDTGDIYCTRSIDREEYDQFMVYGYATTADGYAPEYPLPLLFKVEDDNDNAPYFETKLTVFSVPENCRYGTSVGQVTAIDKDEPGTLHTRLKYKILQQIPDHPKHFTVHPDTGVITTTTPLLDREKCDTYKLVMEVRDMGGQPFGLFTTGTITISLEDENDNSPCFTQSSYFAEVDENRIDVEILRMMVQDQDLPNTPHSKAVYKILQGNENGNFKITTDPNTNEGVLCVVKPLNYEVSRQVTLQISVLNEAQFTNAANTQPPTMCTATVTVKIKDRDEGPECLPPVKVIQSKDGLPAGQQLLGYKAMDPETSSGEGLRYKMVGDEDNWFEINESTGDLRTVKVLDRESKFVKNNQYNISVVAMDSVGRSCTGTLVVLLEDFNDHPPQIDKDITICQQEKDYAVLEPVDLDGPDNGPPFQFLLDNSSSKLWTLESQDGKRAILRQRHNLNYNYYSVPIQIQDRHGFSAKHVLSVRVCDCTIPSECRMAIEERDVKPNVILGKWAILAMVLGSALLLCILFTCFCVTTTKRTVKKCFPDDVAQQNLIVSNTEGPGEEVTEANIRLPTQTVNICDTSTSVGTLGGQGIKTQQNFEMVKGGYTLESNKGGGHHTLESSKGGVLGAADTGRYAYTDWQTFTQPRLGEKVYLCGQAEEHKHCDDYVRSYNYEGKGSMAGSVGCCSDRQEEEGLEFLDHLEPKFRTLAKTCVKK", "length": 896 }, "evidence": [ { "id": "F1SAM0", "url": "https://omabrowser.org/oma/group/F1SAM0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P55849-1", "protein_name": "Desmocollin-1", "gene_name": "Dsc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVACAAPGSTFSKQLLFFLLVLVLFCDACQKVSLHVPSHLKAETPVGKVNLEECLKSPSLILSSDPAFRILEDGTIYTTHDLLLSSEKRGFSILLSDGQGQEQKKLEVVLSAREKKVFRKRHTKEPVHNRSKRRWAPIPCSLMENSLGPFPQHIQQIQSDAAQNYTIFYSISGPGVDKEPYNLFYIEKDTGDIYCTRSIDREQYDQFLVYGYATTADGYAPDYPLPLLFKVEDDNDNAPYFETKLTVFSVPENCRSGTSVGQVTAIDKDEPGTLHTRLKYKILQQIPDQPKHFSIHPDTGVITTTTPLLDREKCDTYKLVMEVRDMGGQPFGLFTTGTITISLEDENDNSPYFTQTSYTTEVEENRIDVEILRMVVHDQDLPNTPHSKAVYTILKGNENGNFKITTDPNTNEGVLCVVKPLNYEVSRQVTLQIGVLNEAQFTNAANAQPPTMCTTTVTVKIKDRDEGPECQPPVKVIQSKDGLPAGQELLGYKAVDPETSSGEGLRYEMVGDEDNWFEINKITGDLRTVKVLDRESKFVKNNQYNISVVATDTAGRSCTGTLVVLLEDFNDHPPQIDKEVTICQQEKDFAVLEPIDLDGPDNGPPFQFLLDNSSSKLWTLESQDGKRAILRQRHNLNYNYYSVPIQIQDRHGFSAKHVLSVRVCDCTTPTECRMAVKEERDAKPNIILGKWAILAMVLGSALLLCILFTCFCVTTTKRTVKKCFPDDVAQQNLIVSNTEGPGEEVTEANIRLPTQTANICDTSMSVGTLGGQGIKTQQSFEMVKGGHTLESHKGGVLGAAEPGRYAYTDWQTFTQPRLGEKVYLCGQAEEHKHCEDYVRPYNYEGKGSMAGSVGCCSDRQEEEGLEFLDQLEPKFRTLAKTCVKK", "length": 886 }, "evidence": [ { "id": "F1SAM0", "url": "https://omabrowser.org/oma/group/F1SAM0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q08554-1", "protein_name": "Desmocollin-1", "gene_name": "DSC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALASAAPGSIFCKQLLFSLLVLTLLCDACQKVYLRVPSHLQAETLVGKVNLEECLKSASLIRSSDPAFRILEDGSIYTTHDLILSSERKSFSIFLSDGQRREQQEIKVVLSARENKSPKKRHTKDTALKRSKRRWAPIPASLMENSLGPFPQHVQQIQSDAAQNYTIFYSISGPGVDKEPFNLFYIEKDTGDIFCTRSIDREKYEQFALYGYATTADGYAPEYPLPLIIKIEDDNDNAPYFEHRVTIFTVPENCRSGTSVGKVTATDLDEPDTLHTRLKYKILQQIPDHPKHFSIHPDTGVITTTTPFLDREKCDTYQLIMEVRDMGGQPFGLFNTGTITISLEDENDNPPSFTETSYVTEVEENRIDVEILRMKVQDQDLPNTPHSKAVYKILQGNENGNFIISTDPNTNEGVLCVVKPLNYEVNRQVILQVGVINEAQFSKAASSQTPTMCTTTVTVKIIDSDEGPECHPPVKVIQSQDGFPAGQELLGYKALDPEISSGEGLRYQKLGDEDNWFEINQHTGDLRTLKVLDRESKFVKNNQYNISVVAVDAVGRSCTGTLVVHLDDYNDHAPQIDKEVTICQNNEDFAVLKPVDPDGPENGPPFQFFLDNSASKNWNIEEKDGKTAILRQRQNLDYNYYSVPIQIKDRHGLVATHMLTVRVCDCSTPSECRMKDKSTRDVRPNVILGRWAILAMVLGSVLLLCILFTCFCVTAKRTVKKCFPEDIAQQNLIVSNTEGPGEEVTEANIRLPMQTSNICDTSMSVGTVGGQGIKTQQSFEMVKGGYTLDSNKGGGHQTLESVKGVGQGDTGRYAYTDWQSFTQPRLGEKVYLCGQDEEHKHCEDYVCSYNYEGKGSLAGSVGCCSDRQEEEGLEFLDHLEPKFRTLAKTCIKK", "length": 894 }, "evidence": [ { "id": "F1SAM0", "url": "https://omabrowser.org/oma/group/F1SAM0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "pmid": "" }, { "name": "desmosome", "id": "GO:0030057", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030057", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "establishment of skin barrier", "id": "GO:0061436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061436", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "pmid": "" }, { "name": "negative regulation of epithelial cell proliferation", "id": "GO:0050680", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050680", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "pmid": "" }, { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "pmid": "" }, { "name": "hair follicle morphogenesis", "id": "GO:0031069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031069", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "pmid": "" }, { "name": "desmosome maintenance", "id": "GO:0002160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002160", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SAM0", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAM0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 896, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAM0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAM0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAM0" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 134, "end_pos": 241, "start_aa": "Arg", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 545, "end_pos": 547 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAM5-1", "uniprot_ac": "F1SAM5", "uniprot_id": "F1SAM5_PIG", "mass": { "chemical_mass": 62816.0, "monoisotopic_mass": 62816.0 }, "refseq": { "ac": "XP_005656694", "name": "interleukin-10 receptor subunit alpha isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656694" }, "gene_names": [ { "name": "IL10RA", "type": "recommended", "evidence": [ { "id": "F1SAM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ] }, { "name": "IL10RA", "type": "synonym", "evidence": [ { "id": "XP_005656694", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656694" } ] } ], "protein_names": [ { "name": "Interleukin-10 receptor subunit alpha", "type": "recommended", "evidence": [ { "id": "F1SAM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAM5/entry#names_and_taxonomy" } ] }, { "name": "CDw210a", "type": "synonym", "evidence": [ { "id": "F1SAM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAM5/entry#names_and_taxonomy" } ] }, { "name": "Interleukin-10 receptor subunit 1", "type": "synonym", "evidence": [ { "id": "F1SAM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAM5/entry#names_and_taxonomy" } ] }, { "name": "interleukin-10 receptor subunit alpha isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005656694", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656694" } ] } ], "function": [ { "annotation": "Cell surface receptor for the cytokine IL10 that participates in IL10-mediated anti-inflammatory functions, limiting excessive tissue disruption caused by inflammation. Upon binding to IL10, induces a conformational change in IL10RB, allowing IL10RB to bind IL10 as well. In turn, the heterotetrameric assembly complex, composed of two subunits of IL10RA and IL10RB, activates the kinases JAK1 and TYK2 that are constitutively associated with IL10RA and IL10RB respectively. These kinases then phosphorylate specific tyrosine residues in the intracellular domain in IL10RA leading to the recruitment and subsequent phosphorylation of STAT3. Once phosphorylated, STAT3 homodimerizes, translocates to the nucleus and activates the expression of anti-inflammatory genes. In addition, IL10RA-mediated activation of STAT3 inhibits starvation-induced autophagy.", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5#function" }, { "database": "UniProtKB", "id": "ARBA00056745", "url": "https://www.uniprot.org/uniprotkb/ARBA00056745#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IL10RA", "url": "https://www.uniprot.org/uniprotkb/F1SAM5", "locus": { "chromosome": "9", "start_pos": 45325168, "end_pos": 45310534, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015085", "url": "https://www.ensembl.org/id/ENSSSCG00000015085" } ] } } ], "crossref": [ { "id": "F1SAM5", "url": "https://alphafold.ebi.ac.uk/entry/F1SAM5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015085", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015085", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525654", "url": "https://www.ncbi.nlm.nih.gov/gene/100525654", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525654", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525654", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TGQWNQP", "url": "https://omabrowser.org/oma/group/TGQWNQP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAM5", "url": "https://www.orthodb.org/?gene=F1SAM5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20859", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20859", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20859:SF90", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20859:SF90", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01108", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01108", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6783783", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783783", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005656694", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005656694", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAM5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAM5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPLLVVPLAMFLCLLLGSCAHELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPYKFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQYFTVTNLSIFFTFVLLLYGALAYCLALQLYVRRRGKLPTVLVFNDPSPFSLTGRLAPSETQDIIHPLDEEAFPKVSPELRNSELHGSTDSGFGSAKPSLQADEPQFLLSAPNPQAEETLGTEAPLSPENSCSSGGGSSTDSGICLQEPSPSPGTEPSWELPAGSNSRNQDDSGIGLVQNSEGKPEDARGGSAVGHTSPLGPEMPAEDPAAEAFRGYLKQTQCTEEKAASASGLEEESSSTDGLGPKFRTCLEAEEGWPLPALAKGYLKQDPSEISLTPSGAPAGQWNQPAEDWPLLHLTSCGDLGTSGWSFAHELAPLDCVEAPGGLVGSFDSDLVTLPLISSLHSNE", "length": 576, "header": "tr|F1SAM5-1|F1SAM5_PIG Isoform 1 of Interleukin-10 receptor subunit alpha OS=Sus scrofa OX=9823 GN=IL10RA PE=3 SV=3 CANONICAL=F1SAM5-1" }, "isoforms": [ { "isoform_ac": "F1SAM5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAM5/entry#F1SAM5-1", "sequence": { "sequence": "MLPLLVVPLAMFLCLLLGSCAHELPKPPSVWFEAEFFHHVLHWTPSPNQSESTYYEVELQRYGDKPWKPIPHCSQTLMLSCDLTMETLDLYHSNGYRARVRAVDKSQHSNWTSSNTRFSVDEVTLTVDSVTLEVHNGIILGTIKPPRPKIAPAGDTYETIFHDFREYEIEVRKVPGPYKFKEKVQHENFSLPILRGLGELCVRVKPSIISRTNKKVWSKEECIVLAPQYFTVTNLSIFFTFVLLLYGALAYCLALQLYVRRRGKLPTVLVFNDPSPFSLTGRLAPSETQDIIHPLDEEAFPKVSPELRNSELHGSTDSGFGSAKPSLQADEPQFLLSAPNPQAEETLGTEAPLSPENSCSSGGGSSTDSGICLQEPSPSPGTEPSWELPAGSNSRNQDDSGIGLVQNSEGKPEDARGGSAVGHTSPLGPEMPAEDPAAEAFRGYLKQTQCTEEKAASASGLEEESSSTDGLGPKFRTCLEAEEGWPLPALAKGYLKQDPSEISLTPSGAPAGQWNQPAEDWPLLHLTSCGDLGTSGWSFAHELAPLDCVEAPGGLVGSFDSDLVTLPLISSLHSNE", "length": 576, "header": "tr|F1SAM5-1|F1SAM5_PIG Isoform 1 of Interleukin-10 receptor subunit alpha OS=Sus scrofa OX=9823 GN=IL10RA PE=3 SV=3 CANONICAL=F1SAM5-1" }, "locus": { "chromosome": "9", "start_pos": 45322958, "end_pos": 45310620, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016451.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016451.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016008.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016008.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525654", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525654", "resource": "KEGG Pathway" }, { "id": "R-SSC-6783783", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783783", "resource": "Reactome", "description": "Interleukin-10 signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A161-1", "protein_name": "Interleukin 10 receptor subunit alpha", "gene_name": "IL10RA", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALCAALALCVTLLLTQPAHGELRLKPTRVRFVAEMVYHLLQWEPGRDAPSDTRYDVEHKIYGTNSPWTAIPNCMKIHGHSCDLTYYTLDPSLRYYARVRAVVGNHTSDWKRTNAFSPQEASLRLSGHSLAVTDNSIHVQLQLLLRAGNRTVKYDDIQKHARRYRVYIRRARDNQTYEVWETASEFYIRNLFWNTEYCISVEPDVASRHIPAMRTAEQCVTIGHRDESAELIPITVSSFAIVLFLLGILGALLVCTYLKKPMRPPSVLKSFIKQSSLWMEQEISSSGSTDAVQQLFLCQKEPQHHSAPSTTGTAQPPTEKSSLLPAWPKEQAVGSRDSSCTSTDSGICLHSSSSSSSSSSSSKLSHSENGGYKQQLPVGDDSGVGLESPAGSLMEATHGAKPDFCPSTGQDSPDEVEFRGYLQQSKGTVELRQGQADGGTLWACAGAPWGPAGTDIVLDMDCTELPVAKGYLKQSSPECPRSHTPALAAPGSPMLTYGTPLASKASPELLKVPVDLGIFDTDLLGTLPLISSLSSDEWLTVQTNSLSMLSRDSKDSRL", "length": 558 }, "evidence": [ { "id": "F1SAM5", "url": "https://omabrowser.org/oma/group/F1SAM5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MM48-1", "protein_name": "Interleukin-10 receptor subunit alpha", "gene_name": "IL10RA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLSHQIVKLVALLSLLLGSRAHELPRPPSAWFEAEFFHHVLYWTPIPNQSESTYYEVELLRYGVEPTSWKSIQRCSQMLMMSCDVTMETLDLYRSNGYRARVRAVDGSQHSNWTSPNTRFSMDEVTLTVASVKLEVHNSNIVGAIQLPRPEVAPEGDTYENIFHNFREYQIEVRKAPGHYESHGKVKNESFKLPIPRGVGEFCVRVKPSVGSRVNKEVWSKEECILLTSQYFTVTNISIFLTFVLLLYGALAFCLTFQLYVRRRGKLPAVLVFKKPSPFNLISQFSHPETQDTVHTLDEEAFPKVTPELRNSDMHGSTDSGFGSAKPSLQTEEPQFLLPASDPQAGGTLEKGMPQELENSCGSAGSSNSADSGICLPDPRLCPGTEPSWEPQVGSDSRDREDSGIGLVQNSRGQPEDAQGGSASGHVSPLGPEEPVEEDSVAGAFQGYLKQTQCPEEKAAQAGGLEEESSSTEDLDPQFRTCLDTEAGWPLPALAKGYVQQDPPEMILAPLQTPEEQWDRPTEDWSFLGLTSCGDLGTSDWSFAHDLAPLDCVPAPGGLLGSFDSDLVTLPLITSLQSNE", "length": 580 }, "evidence": [ { "id": "F1SAM5", "url": "https://omabrowser.org/oma/group/F1SAM5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3V830-1", "protein_name": "Interleukin-10 receptor subunit alpha", "gene_name": "Il10ra", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRLLPFLVSISSLSLGFRAHELPSPSSVWFEARFFQHILRWMSIPNQSESTYYEVALKKYGTSVWKDIHICSKAQTLSCDLTTSTLDLYHSSGYRARVRAVDNSQYSNWTITETRFTVDEVILTVDSVTLKVSNGFIYGTIHPPRPNLVPVGDEYEQIFTHHRIYRVCIRKFSEQKNITKTVEQENFTLEVPKGMRKFCVKVMPHVESRINKAEWSEEQCLHVTTEHYFTVTNLSIFFLSILILCGALVCLVLLWYIRHPGKLPAVLVFEKPPDFLLANPRCPETLDDIHILDLEAFPKVSPELKDSDLHGSTDSGFGSGKPSLQTEESQFFLLDSHAQIQETLGKEGSSELQDTCGDNTDSGICLQESSLHSSMGPPWKQQFGYTHQDQDDSDLVQNSPGHPKHTQDGSALGHGCLLEPEVPEEKDQVMVTFQGYQKQTRWKEEAAEPLDGEIPLAEAFDPELGVRLQGDSAWPPVALATGYLKQESQGMASAPPGTPSRQWNQLAEECSLLGVVSCEDLSIESLGFAHELVPLDCGAASSGLLDSLGTNLVTLPLISSLQIEE", "length": 567 }, "evidence": [ { "id": "F1SAM5", "url": "https://omabrowser.org/oma/group/F1SAM5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q13651-1", "protein_name": "Interleukin-10 receptor subunit alpha", "gene_name": "IL10RA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLPCLVVLLAALLSLRLGSDAHGTELPSPPSVWFEAEFFHHILHWTPIPNQSESTCYEVALLRYGIESWNSISNCSQTLSYDLTAVTLDLYHSNGYRARVRAVDGSRHSNWTVTNTRFSVDEVTLTVGSVNLEIHNGFILGKIQLPRPKMAPANDTYESIFSHFREYEIAIRKVPGNFTFTHKKVKHENFSLLTSGEVGEFCVQVKPSVASRSNKGMWSKEECISLTRQYFTVTNVIIFFAFVLLLSGALAYCLALQLYVRRRKKLPSVLLFKKPSPFIFISQRPSPETQDTIHPLDEEAFLKVSPELKNLDLHGSTDSGFGSTKPSLQTEEPQFLLPDPHPQADRTLGNREPPVLGDSCSSGSSNSTDSGICLQEPSLSPSTGPTWEQQVGSNSRGQDDSGIDLVQNSEGRAGDTQGGSALGHHSPPEPEVPGEEDPAAVAFQGYLRQTRCAEEKATKTGCLEEESPLTDGLGPKFGRCLVDEAGLHPPALAKGYLKQDPLEMTLASSGAPTGQWNQPTEEWSLLALSSCSDLGISDWSFAHDLAPLGCVAAPGGLLGSFNSDLVTLPLISSLQSSE", "length": 578 }, "evidence": [ { "id": "F1SAM5", "url": "https://omabrowser.org/oma/group/F1SAM5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q61727-1", "protein_name": "Interleukin-10 receptor subunit alpha", "gene_name": "Il10ra", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSRLLPFLVTISSLSLEFIAYGTELPSPSYVWFEARFFQHILHWKPIPNQSESTYYEVALKQYGNSTWNDIHICRKAQALSCDLTTFTLDLYHRSYGYRARVRAVDNSQYSNWTTTETRFTVDEVILTVDSVTLKAMDGIIYGTIHPPRPTITPAGDEYEQVFKDLRVYKISIRKFSELKNATKRVKQETFTLTVPIGVRKFCVKVLPRLESRINKAEWSEEQCLLITTEQYFTVTNLSILVISMLLFCGILVCLVLQWYIRHPGKLPTVLVFKKPHDFFPANPLCPETPDAIHIVDLEVFPKVSLELRDSVLHGSTDSGFGSGKPSLQTEESQFLLPGSHPQIQGTLGKEESPGLQATCGDNTDSGICLQEPGLHSSMGPAWKQQLGYTHQDQDDSDVNLVQNSPGQPKYTQDASALGHVCLLEPKAPEEKDQVMVTFQGYQKQTRWKAEAAGPAECLDEEIPLTDAFDPELGVHLQDDLAWPPPALAAGYLKQESQGMASAPPGTPSRQWNQLTEEWSLLGVVSCEDLSIESWRFAHKLDPLDCGAAPGGLLDSLGSNLVTLPLISSLQVEE", "length": 575 }, "evidence": [ { "id": "F1SAM5", "url": "https://omabrowser.org/oma/group/F1SAM5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "negative regulation of inflammatory response", "id": "GO:0050728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050728", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" }, { "name": "negative regulation of autophagy", "id": "GO:0010507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010507", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" }, { "name": "positive regulation of receptor signaling pathway via JAK-STAT", "id": "GO:0046427", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046427", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" }, { "name": "cytokine-mediated signaling pathway", "id": "GO:0019221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019221", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" }, { "name": "intestinal epithelial structure maintenance", "id": "GO:0060729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060729", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" }, { "name": "ubiquitin-dependent endocytosis", "id": "GO:0070086", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070086", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" }, { "name": "interleukin-10-mediated signaling pathway", "id": "GO:0140105", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140105", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "interleukin-10 receptor activity", "id": "GO:0004920", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004920", "evidence": [ { "database": "UniProtKB", "id": "F1SAM5", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAM5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 576, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAM5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAM5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAM5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAM5" }, { "id": "PF01108", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 111, "start_aa": "Val", "end_aa": "Trp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 188, "end_pos": 190 }, { "start_pos": 234, "end_pos": 236 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAN1-1", "uniprot_ac": "F1SAN1", "uniprot_id": "F1SAN1_PIG", "mass": { "chemical_mass": 27719.0, "monoisotopic_mass": 27719.0 }, "refseq": { "ac": "XP_003123478", "name": "caspase-14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123478" }, "gene_names": [ { "name": "CASP14", "type": "recommended", "evidence": [ { "id": "F1SAN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ] }, { "name": "CASP14", "type": "synonym", "evidence": [ { "id": "XP_003123478", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123478" } ] } ], "protein_names": [ { "name": "Caspase-14", "type": "recommended", "evidence": [ { "id": "F1SAN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN1/entry#names_and_taxonomy" } ] }, { "name": "caspase-14", "type": "synonym", "evidence": [ { "id": "XP_003123478", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123478" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CASP14", "url": "https://www.uniprot.org/uniprotkb/F1SAN1", "locus": { "chromosome": "2", "start_pos": 62524183, "end_pos": 62531642, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013835", "url": "https://www.ensembl.org/id/ENSSSCG00000013835" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013835", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013835", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00032", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00032", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518472", "url": "https://www.ncbi.nlm.nih.gov/gene/100518472", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002138", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002138", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518472", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518472", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "REDPVSC", "url": "https://omabrowser.org/oma/group/REDPVSC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAN1", "url": "https://www.orthodb.org/?gene=F1SAN1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10454:SF131", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10454:SF131", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00656", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00656", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003123478", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123478", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNPQPLEEEAYDMSGARLALTLCVTKAREGSQADLDALESMFQQLRFESTMKKDPTAQQFYEELEKFQQAIDAREDFVSCAFVVLMAHGLEGRLKGEDGKMVDLEDLFQVLNNKNCRGLRARPKVYIVQACRGEQRDPGEPIGGEDLVMIAKSSPETIPTYTDTLHVYSTVEGYIAYRHDQEGSYFIQTLVDVFMNRRGPILELLTEVTRRMAEEELFQEGKPRKVNPEIYSTLRKRLYLQ", "length": 242, "header": "tr|F1SAN1-1|F1SAN1_PIG Isoform 1 of Caspase-14 OS=Sus scrofa OX=9823 GN=CASP14 PE=3 SV=2 CANONICAL=F1SAN1-1" }, "isoforms": [ { "isoform_ac": "F1SAN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1/entry#F1SAN1-1", "sequence": { "sequence": "MSNPQPLEEEAYDMSGARLALTLCVTKAREGSQADLDALESMFQQLRFESTMKKDPTAQQFYEELEKFQQAIDAREDFVSCAFVVLMAHGLEGRLKGEDGKMVDLEDLFQVLNNKNCRGLRARPKVYIVQACRGEQRDPGEPIGGEDLVMIAKSSPETIPTYTDTLHVYSTVEGYIAYRHDQEGSYFIQTLVDVFMNRRGPILELLTEVTRRMAEEELFQEGKPRKVNPEIYSTLRKRLYLQ", "length": 242, "header": "tr|F1SAN1-1|F1SAN1_PIG Isoform 1 of Caspase-14 OS=Sus scrofa OX=9823 GN=CASP14 PE=3 SV=2 CANONICAL=F1SAN1-1" }, "locus": { "chromosome": "2", "start_pos": 62527165, "end_pos": 62524197, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015113.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015113.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014708.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014708.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518472", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518472", "resource": "KEGG Pathway" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "G3X7H1-1", "protein_name": "Caspase-14", "gene_name": "CASP14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "ESKEMSSPQPLEEETYDMSGARLALTLCVTKAREGSEADLDALERMFQQLGFESTMKRDPTAQQFQEELEKFQQAIDAREDFVSCAFVVLMAHGLEGRLKGKDEKMVELEDLFQALNNKNCRALRAKPKVYIVQACRGEQRDPGEPVTGGHLVMITENTPETIPTYTDTLHVFSTIEGYIAYRHDQEGSYFIQTLVDVFINKKGPILELLTEVTRRMAEAEMVQEGEAKKVNPEIQSTLRKQLYLQ", "length": 246 }, "evidence": [ { "id": "F1SAN1", "url": "https://omabrowser.org/oma/group/F1SAN1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O89094-1", "protein_name": "Caspase-14", "gene_name": "Casp14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESEMSDPQPLQEERYDMSGARLALTLCVTKAREGSEVDMEALERMFRYLKFESTMKRDPTAQQFLEELDEFQQTIDNWEEPVSCAFVVLMAHGEEGLLKGEDEKMVRLEDLFEVLNNKNCKALRGKPKVYIIQACRGEHRDPGEELRGNEELGGDEELGGDEVAVLKNNPQSIPTYTDTLHIYSTVEGYLSYRHDEKGSGFIQTLTDVFIHKKGSILELTEEITRLMANTEVMQEGKPRKVNPEVQSTLRKKLYLQ", "length": 257 }, "evidence": [ { "id": "F1SAN1", "url": "https://omabrowser.org/oma/group/F1SAN1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P31944-1", "protein_name": "Caspase-14", "gene_name": "CASP14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSNPRSLEEEKYDMSGARLALILCVTKAREGSEEDLDALEHMFRQLRFESTMKRDPTAEQFQEELEKFQQAIDSREDPVSCAFVVLMAHGREGFLKGEDGEMVKLENLFEALNNKNCQALRAKPKVYIIQACRGEQRDPGETVGGDEIVMVIKDSPQTIPTYTDALHVYSTVEGYIAYRHDQKGSCFIQTLVDVFTKRKGHILELLTEVTRRMAEAELVQEGKARKTNPEIQSTLRKRLYLQ", "length": 242 }, "evidence": [ { "id": "F1SAN1", "url": "https://omabrowser.org/oma/group/F1SAN1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "pmid": "" }, { "name": "cornified envelope", "id": "GO:0001533", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001533", "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "pmid": "" }, { "name": "positive regulation of neuron apoptotic process", "id": "GO:0043525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043525", "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cysteine-type endopeptidase activity", "id": "GO:0004197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004197", "evidence": [ { "database": "UniProtKB", "id": "F1SAN1", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" }, { "id": "PS50207", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50207" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Caspase family p10", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 242, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SAN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN1" }, { "id": "PS50208", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50208" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Caspase family p20", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 136, "start_aa": "Arg", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAN4-1", "uniprot_ac": "F1SAN4", "uniprot_id": "F1SAN4_PIG", "mass": { "chemical_mass": 35082.0, "monoisotopic_mass": 35082.0 }, "refseq": { "ac": "XP_003480814", "name": "olfactory receptor 7C2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480814" }, "gene_names": [ { "name": "LOC100736663", "type": "recommended", "evidence": [ { "id": "F1SAN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN4" } ] }, { "name": "LOC100736663", "type": "synonym", "evidence": [ { "id": "XP_003480814", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480814" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SAN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN4/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 7C2-like", "type": "synonym", "evidence": [ { "id": "XP_003480814", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480814" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SAN4", "url": "https://www.uniprot.org/uniprotkb/F1SAN4#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAN4", "url": "https://www.uniprot.org/uniprotkb/F1SAN4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100736663", "url": "https://www.uniprot.org/uniprotkb/F1SAN4", "locus": {} } ], "crossref": [ { "id": "F1SAN4", "url": "https://alphafold.ebi.ac.uk/entry/F1SAN4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013832", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013832", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15234", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15234", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100736663", "url": "https://www.ncbi.nlm.nih.gov/gene/100736663", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736663", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736663", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ENINCGN", "url": "https://omabrowser.org/oma/group/ENINCGN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAN4", "url": "https://www.orthodb.org/?gene=F1SAN4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003480814", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480814", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAN4", "url": "https://www.uniprot.org/uniprotkb/F1SAN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAN4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESGNQTGVRNFLLLGFTKEPALFWLFLSMYLIIFTGNLAIILAIISDSHLHTPMYFFLSNLSFADFCFTSTTIPKMLMNLQTERKVITYAGCLSQIFFFIVFGCLDNLLLTVMAYDRFVAICHPLNYTVIMNPQVCGMLALGSWCISIIGSLLGTLTLLRLSFCRNMNISQFFCDLPEVLKLACSDTLINNIVLYFVTIALGVFPLSGILFSYSQIFSSILRISSVRGKYKAFSTCGSHLSVVSLFYGTGLGVYLSSAMTSSSRTSMVASLMYTMVTPMLNPFIYSLRNKDMKGALIRLLGRAASLSVGTFTRLS", "length": 316, "header": "tr|F1SAN4-1|F1SAN4_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100736663 PE=3 SV=2 CANONICAL=F1SAN4-1" }, "isoforms": [ { "isoform_ac": "F1SAN4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN4/entry#F1SAN4-1", "sequence": { "sequence": "MESGNQTGVRNFLLLGFTKEPALFWLFLSMYLIIFTGNLAIILAIISDSHLHTPMYFFLSNLSFADFCFTSTTIPKMLMNLQTERKVITYAGCLSQIFFFIVFGCLDNLLLTVMAYDRFVAICHPLNYTVIMNPQVCGMLALGSWCISIIGSLLGTLTLLRLSFCRNMNISQFFCDLPEVLKLACSDTLINNIVLYFVTIALGVFPLSGILFSYSQIFSSILRISSVRGKYKAFSTCGSHLSVVSLFYGTGLGVYLSSAMTSSSRTSMVASLMYTMVTPMLNPFIYSLRNKDMKGALIRLLGRAASLSVGTFTRLS", "length": 316, "header": "tr|F1SAN4-1|F1SAN4_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100736663 PE=3 SV=2 CANONICAL=F1SAN4-1" }, "locus": { "chromosome": "2", "start_pos": 62631556, "end_pos": 62630609, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015110.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015110.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014705.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014705.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAN4", "url": "https://www.uniprot.org/uniprotkb/F1SAN4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736663", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736663", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SAN4", "url": "https://www.uniprot.org/uniprotkb/F1SAN4" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SAN4", "url": "https://www.uniprot.org/uniprotkb/F1SAN4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAN4", "url": "https://www.uniprot.org/uniprotkb/F1SAN4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SAN4", "url": "https://www.uniprot.org/uniprotkb/F1SAN4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 169, "end_pos": 171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAN4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAN4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAN4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN4" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 286, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 127, "end_pos": 129 }, { "start_pos": 169, "end_pos": 171 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAN5-1", "uniprot_ac": "F1SAN5", "uniprot_id": "F1SAN5_PIG", "mass": { "chemical_mass": 36546.0, "monoisotopic_mass": 36546.0 }, "refseq": { "ac": "XP_003123502", "name": "olfactory receptor 7A17-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123502" }, "gene_names": [ { "name": "LOC100523890", "type": "recommended", "evidence": [ { "id": "F1SAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN5" } ] }, { "name": "LOC100523890", "type": "synonym", "evidence": [ { "id": "XP_003123502", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123502" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN5/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 7A17-like", "type": "synonym", "evidence": [ { "id": "XP_003123502", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123502" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SAN5", "url": "https://www.uniprot.org/uniprotkb/F1SAN5#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAN5", "url": "https://www.uniprot.org/uniprotkb/F1SAN5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100523890", "url": "https://www.uniprot.org/uniprotkb/F1SAN5", "locus": {} } ], "crossref": [ { "id": "F1SAN5", "url": "https://alphafold.ebi.ac.uk/entry/F1SAN5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15234", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15234", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523890", "url": "https://www.ncbi.nlm.nih.gov/gene/100523890", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523890", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523890", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAN5", "url": "https://www.orthodb.org/?gene=F1SAN5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123502", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123502", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAN5", "url": "https://www.uniprot.org/uniprotkb/F1SAN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAN5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLPLSWQTVLYIEPRNHSGLPVFLLLGLSKKPEIQSVLFGLFLSLYFVTIFGNLLIILAIISDSHLHTPMYSFLANLSFSDICFTSTTIPKMLLNIQTQSKVITYTGCITQMFFFTVFGLLDNLLLTVMAYDRFVAICHPLHYTVIMNPWLCAQLLLLTWLISALGALPESLTTLQLSFCAVVEIPHYFCELPEVLKLACSDTFINNVVLYVVTGVMGFFPLAGILFSYSRIVASVLRISTAGGKYKAFSTCGSHLSVVSLFYGTCLGVYLSSTWTHASRTGAFASVLYTVVTPMMNPFIYSLRNRDMKRALRKLLYSVLSLQGEH", "length": 327, "header": "tr|F1SAN5-1|F1SAN5_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100523890 PE=3 SV=3 CANONICAL=F1SAN5-1" }, "isoforms": [ { "isoform_ac": "F1SAN5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN5/entry#F1SAN5-1", "sequence": { "sequence": "MLLPLSWQTVLYIEPRNHSGLPVFLLLGLSKKPEIQSVLFGLFLSLYFVTIFGNLLIILAIISDSHLHTPMYSFLANLSFSDICFTSTTIPKMLLNIQTQSKVITYTGCITQMFFFTVFGLLDNLLLTVMAYDRFVAICHPLHYTVIMNPWLCAQLLLLTWLISALGALPESLTTLQLSFCAVVEIPHYFCELPEVLKLACSDTFINNVVLYVVTGVMGFFPLAGILFSYSRIVASVLRISTAGGKYKAFSTCGSHLSVVSLFYGTCLGVYLSSTWTHASRTGAFASVLYTVVTPMMNPFIYSLRNRDMKRALRKLLYSVLSLQGEH", "length": 327, "header": "tr|F1SAN5-1|F1SAN5_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100523890 PE=3 SV=3 CANONICAL=F1SAN5-1" }, "locus": { "chromosome": "2", "start_pos": 62646776, "end_pos": 62645796, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015109.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015109.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014704.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014704.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAN5", "url": "https://www.uniprot.org/uniprotkb/F1SAN5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523890", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523890", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SAN5", "url": "https://www.uniprot.org/uniprotkb/F1SAN5" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SAN5", "url": "https://www.uniprot.org/uniprotkb/F1SAN5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAN5", "url": "https://www.uniprot.org/uniprotkb/F1SAN5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SAN5", "url": "https://www.uniprot.org/uniprotkb/F1SAN5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAN5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 327, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAN5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAN5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN5" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 53, "end_pos": 302, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 17, "end_pos": 19 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAN7-1", "uniprot_ac": "F1SAN7", "uniprot_id": "F1SAN7_PIG", "mass": { "chemical_mass": 80109.0, "monoisotopic_mass": 80109.0 }, "refseq": { "ac": "XP_003123474", "name": "rho GTPase-activating protein SYDE1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123474" }, "gene_names": [ { "name": "SYDE1", "type": "recommended", "evidence": [ { "id": "F1SAN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ] }, { "name": "SYDE1", "type": "synonym", "evidence": [ { "id": "XP_003123474", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123474" } ] } ], "protein_names": [ { "name": "Rho GTPase-activating protein SYDE1", "type": "recommended", "evidence": [ { "id": "F1SAN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN7/entry#names_and_taxonomy" } ] }, { "name": "Synapse defective protein 1 homolog 1", "type": "synonym", "evidence": [ { "id": "F1SAN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN7/entry#names_and_taxonomy" } ] }, { "name": "rho GTPase-activating protein SYDE1", "type": "synonym", "evidence": [ { "id": "XP_003123474", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123474" } ] } ], "function": [ { "annotation": "GTPase activator for the Rho-type GTPases. As a GCM1 downstream effector, it is involved in placental development and positively regulates trophoblast cells migration. It regulates cytoskeletal remodeling by controlling the activity of Rho GTPases including RHOA, CDC42 and RAC1.", "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7#function" }, { "database": "UniProtKB", "id": "ARBA00057607", "url": "https://www.uniprot.org/uniprotkb/ARBA00057607#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYDE1", "url": "https://www.uniprot.org/uniprotkb/F1SAN7", "locus": { "chromosome": "2", "start_pos": 62447037, "end_pos": 62453949, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013829", "url": "https://www.ensembl.org/id/ENSSSCG00000013829" } ] } } ], "crossref": [ { "id": "F1SAN7", "url": "https://alphafold.ebi.ac.uk/entry/F1SAN7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013829", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013829", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517807", "url": "https://www.ncbi.nlm.nih.gov/gene/100517807", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052118", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052118", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057459", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057459", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517807", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517807", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FLQLDHT", "url": "https://omabrowser.org/oma/group/FLQLDHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAN7", "url": "https://www.orthodb.org/?gene=F1SAN7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46150", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46150", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46150:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46150:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25336", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25336", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013404", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013406", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013409", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013409", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9035034", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003123474", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123474", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAN7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEPLLRKTFSRLRGREKLPRKKSDAKERGRPAQRQEPSPPEPEPQALEGSQPGAEGPPSPEESRSPARGAYLQSLEPSSRRWVLGGAKPPEEAALGPGAPGSGEPAGEIWYNPIPEEDPRPPTAEPPGLQPGSAEPESLTSPGTAPASPPTKASRTKSPGPARRLSMKMKKLPELRRRLSLRSTRAGRERERAAPEGSVISRYHLDSSVGTPGRAAVAEGARGLRAGYLSDGDSPERPAGPPSPTAFRPYEVGPSARSPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGVARARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGCQAQQLAVRLEPQGLLYAKLTLSEQHEAPSTAEPRVFGLPLPLLVEREQSPGQVPLIIQKCVGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSTAVCLSEDLYPDINVITGILKDYLRELPTPLITQPLYQVVLEAMARGPPSRAPQSTEGTRGLLSCLPDVERATLTLLLDHLRLVSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQAWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVCGRDFLPCGRDFLPGPDYDHVTGSDSEDEEEVGGETTGATDFEDDFEAPFNPHLNLKDFDALILDLERELSKQINVCL", "length": 735, "header": "tr|F1SAN7-1|F1SAN7_PIG Isoform 1 of Rho GTPase-activating protein SYDE1 OS=Sus scrofa OX=9823 GN=SYDE1 PE=4 SV=1 CANONICAL=F1SAN7-1" }, "isoforms": [ { "isoform_ac": "F1SAN7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN7/entry#F1SAN7-1", "sequence": { "sequence": "MAEPLLRKTFSRLRGREKLPRKKSDAKERGRPAQRQEPSPPEPEPQALEGSQPGAEGPPSPEESRSPARGAYLQSLEPSSRRWVLGGAKPPEEAALGPGAPGSGEPAGEIWYNPIPEEDPRPPTAEPPGLQPGSAEPESLTSPGTAPASPPTKASRTKSPGPARRLSMKMKKLPELRRRLSLRSTRAGRERERAAPEGSVISRYHLDSSVGTPGRAAVAEGARGLRAGYLSDGDSPERPAGPPSPTAFRPYEVGPSARSPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGVARARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGCQAQQLAVRLEPQGLLYAKLTLSEQHEAPSTAEPRVFGLPLPLLVEREQSPGQVPLIIQKCVGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSTAVCLSEDLYPDINVITGILKDYLRELPTPLITQPLYQVVLEAMARGPPSRAPQSTEGTRGLLSCLPDVERATLTLLLDHLRLVSSFHAHNRMTPQNLAVCFGPVLLPARQTPTRPRIRSSGPGLSNAVDFKRHIEVLHYLLQAWPDPRRPPEAPELVPYLRPKPQPPLHLPLAGPDVVTRPRDRSGPESPPSNRYAGDWSVCGRDFLPCGRDFLPGPDYDHVTGSDSEDEEEVGGETTGATDFEDDFEAPFNPHLNLKDFDALILDLERELSKQINVCL", "length": 735, "header": "tr|F1SAN7-1|F1SAN7_PIG Isoform 1 of Rho GTPase-activating protein SYDE1 OS=Sus scrofa OX=9823 GN=SYDE1 PE=4 SV=1 CANONICAL=F1SAN7-1" }, "locus": { "chromosome": "2", "start_pos": 62453817, "end_pos": 62448043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015107.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015107.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014702.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014702.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 212, "start_aa": "Thr", "end_pos": 212, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr212", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517807", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517807", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" }, { "id": "R-SSC-9013406", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "resource": "Reactome", "description": "RHOQ GTPase cycle" }, { "id": "R-SSC-9013409", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013409", "resource": "Reactome", "description": "RHOJ GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" }, { "id": "R-SSC-9035034", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "resource": "Reactome", "description": "RHOF GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2UAW2-1", "protein_name": "Rho GTPase-activating protein SYDE1", "gene_name": "SYDE1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAEPLLRRTFSRLRGRDRPRRKKSDGKEREHPQPGPDPLPAPEASPAPPEPSASRRQNWTRFSGRHPPPRAPLEGLEPTEQDATSSTPPSAADPPGEEPSELAEEADAAELCGPGRSPGHGAYLQSLERSSRHWVLSSGKAAGLDEAGGGTEMEVGTGGSEGEIWYNPIPEDEDPPKPCREDGKGMAESPGAHGMEEPAAGRSQACAKMPIPCVSSGAGLPSPSPPSSPGATKKGRSLSKVKSPGTVRRLSMKMKKLPELRRKLSLRSPRPRGQEGSTSPSDARKESSNVISRYHLDTSVASLPRSKAASKGGYLSDGDSPELPAKTGVLAEPEDGESGLDVAAFRPYSCGELPRGGQHISGLVSVHLYGVRDLKPPRAETREVFCVLQVDAANRARTALLPCKAAFLGLNHTFNLELEGAQLLKVMVFSWDPSSCRNRLCCHGSVLLPHIFRGSRAQQLAVQLQPRGVLFTKLTLVEQWEGPGEREPRVFGVELGQLVEREKTASKVPLLIQKCVAEIEKRGLKVVGLYRLCGSAAVKKELRDAFERDSAAVTLSEQLYPDINVITGILKDYLRELPTPLITPTLYHVVLEAMAKRPPRTPPAERDAVPLLDCLPDVEKATLTRLLDHLSLVASFHDFNRMNSQNIAVCFGPVLLTQSQEPRRGGTAAAVPRSYARSEDIASAVDFKRHIEVLHYLLQAWPAPRSPLTPQVPPTHPRQPPPRLDLPDTTVVARHRPRGPESPPSNRYAGDWSVCGHQLGGGYEEVTTGDNDSRAAHRRTLFVADFGLGDDPEAPFGPRLNLKDFDALILDLERELAKQINVCL", "length": 824 }, "evidence": [ { "id": "F1SAN7", "url": "https://omabrowser.org/oma/group/F1SAN7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZZN9-1", "protein_name": "Rho GTPase-activating protein SYDE1", "gene_name": "Syde1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEPLLRKTFSRLRGREKLPRKKSDAKDRGRPAQRSEPKPPEPEPRVLEGSQAGAEVPLSPETPRSPARGAYLQSLEPSSRRWVLGGAKPPEEISLGPRTPSSGEPAGEIWYNPIPEEDPRPPAPEPVGSQLASSEPEGPILQGAAPTSPPTKTSRTKSPGPARRLSMKMKKLPELRRRLSLRSTRTSRERERTAPAGSVISRYHLDSSVATPGQASVAGGTRSPRGGYLSDGDSPERPGGPPSPTAFRPYEVGPSARAPPAALWGRLSLHLYGLGGLRPTPGATPRDLCCLLQVDGVARARTGPLRSGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTIFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAPATVEPRVFGLPLQLLVEREQSPGQVPLIIRKCVGQIECRGLRVVGLYRLCGSAAVKKELRDAFEQDSAAVCLSEDVYPDINVITGILKDYLRELPTPLITQPLYQVVLEAMAQGHPSRASLGPEGTRGLLSCLPDVERATLTLLLDHLRLVSSFHTHNRMTPQNLAVCFGPVLLPARQTPSRTRLRGSGPGVSSAVDFKRHIEVLHYLLQSWPDTRRPSETPDVAPYLRPKRQPPLHLPLDGPEVVTRPRGRGGPESPPSNRYAGDWSVCGGDLLPRGRDFLSGPDYDHVTGSDSEEDEDESGEPRGTTDFEDEFDAPFNPHLNLKDFDALILDLERELSKQINVCL", "length": 735 }, "evidence": [ { "id": "F1SAN7", "url": "https://omabrowser.org/oma/group/F1SAN7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6ZW31-1", "protein_name": "Rho GTPase-activating protein SYDE1", "gene_name": "SYDE1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEPLLRKTFSRLRGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSSPEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRLSLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPAGPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEARARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKCVGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLRELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVSSFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSWPDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGRDFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALILDLERELSKQINVCL", "length": 735 }, "evidence": [ { "id": "F1SAN7", "url": "https://omabrowser.org/oma/group/F1SAN7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DBZ9-1", "protein_name": "Rho GTPase-activating protein SYDE1", "gene_name": "Syde1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEPLLRKTFSRLRGREKLPRKKSEAKDRGHPAQRSEPKPPEPEPRVLEGSQAGAEVPPSPETPRSPTRGAYLQSLEPSSRRWVLGGAKPPEEISLGPRTPSSGEPAGEIWYNPIPEEDPRPPAPEPLGSQLASSEPEGPNIQGAAPTSPPTKTSRTKSPGPARRLSMKMKKLPELRRRLSLRSTRTGRDRERTAPAGSVISRYRLDSSVGTPGQASVAGGSRSPRGGYLSDGDSPERPGGPPSPTAFRPYEVGPSARTPPAALWGRLSLHLYGLGGLRPSPGATPRDLCCLLQVDGVARARTGPLRSGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTIFRGCQAQQLAVRLEPQGFLYAKLTLSEQQEAPATAEPRVFGLPLQLLVEREQSPGQVPLIIRKCVGQIECRGLRVVGLYRLCGSAAVKKELRDAFEQDSAAVCLSEDVYPDINVITGILKDYLRELPTPLITQPLYQVVLEAMAQGHPSRASLGPEGTRGLLRCLPDVERATLTLLLDHLRLVSSFHTHNRMTPQNXAVCFGPVLLPARQTPSRPRLRSSGPGVTSAVDFKRHIEVLHYLLQSWPDTRRPSDTPDGAVAPYLRPKRQPPLHLPLAGPEVVTRPRGRGGPESPPSNRYAGDWSVCGGDLLPCGRDFLSGPDYDHVTGSDSEEDDDETGEPRGTTDFEDEFDAPFNPHLNLKDFDALILDLERELSKQINVCL", "length": 737 }, "evidence": [ { "id": "F1SAN7", "url": "https://omabrowser.org/oma/group/F1SAN7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ], "pmid": "" }, { "name": "positive regulation of trophoblast cell migration", "id": "GO:1901165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901165", "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ], "pmid": "" }, { "name": "regulation of cytoskeleton organization", "id": "GO:0051493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051493", "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ], "pmid": "" }, { "name": "regulation of Ras protein signal transduction", "id": "GO:0046578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046578", "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "synaptic membrane", "id": "GO:0097060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097060", "evidence": [ { "database": "UniProtKB", "id": "F1SAN7", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAN7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 735, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAN7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAN7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 249, "end_pos": 366, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SAN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN7" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 398, "end_pos": 604, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 212 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAN8-1", "uniprot_ac": "F1SAN8", "uniprot_id": "F1SAN8_PIG", "mass": { "chemical_mass": 34652.0, "monoisotopic_mass": 34652.0 }, "refseq": {}, "gene_names": [ { "name": "OR1I1", "type": "recommended", "evidence": [ { "id": "F1SAN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN8" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SAN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SAN8", "url": "https://www.uniprot.org/uniprotkb/F1SAN8#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAN8", "url": "https://www.uniprot.org/uniprotkb/F1SAN8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR1I1", "url": "https://www.uniprot.org/uniprotkb/F1SAN8", "locus": { "chromosome": "2", "start_pos": 62470357, "end_pos": 62471298, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013828", "url": "https://www.ensembl.org/id/ENSSSCG00000013828" } ] } } ], "crossref": [ { "id": "F1SAN8", "url": "https://alphafold.ebi.ac.uk/entry/F1SAN8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15918", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15918", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523537", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523537", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KAATLMC", "url": "https://omabrowser.org/oma/group/KAATLMC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAN8", "url": "https://www.orthodb.org/?gene=F1SAN8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAN8", "url": "https://www.uniprot.org/uniprotkb/F1SAN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAN8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPENLTTVSEFLLLGLSEKPEHQSFLFGLFLSIYLVTVFGNLLIILAIISDSHLHTPMYFFLSNLSLIDIFFSSTTIPKMLVNLWTQCQAIPFAGCLAQMYAFHLFGTMDSFLLAVMAIDRFMAIVHPLRYLVIMSACVCGLLVGGAWLITNLQSLVHTCLMAQLTFCAGSEIPHFFCDLMPLLKLSCSDTHTNKLAIFVFGIIMGISPLACILFSYACIFWAVFKIPSAQGKWKAFSTCSSHLTVVSLFYGTIFAVYLQPASPASTQKDKVAALMCGVVIPMLNPFIYSLRNKNMKEALRKLVGKVASSQS", "length": 313, "header": "tr|F1SAN8-1|F1SAN8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR1I1 PE=3 SV=1 CANONICAL=F1SAN8-1" }, "isoforms": [ { "isoform_ac": "F1SAN8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAN8/entry#F1SAN8-1", "sequence": { "sequence": "MEPENLTTVSEFLLLGLSEKPEHQSFLFGLFLSIYLVTVFGNLLIILAIISDSHLHTPMYFFLSNLSLIDIFFSSTTIPKMLVNLWTQCQAIPFAGCLAQMYAFHLFGTMDSFLLAVMAIDRFMAIVHPLRYLVIMSACVCGLLVGGAWLITNLQSLVHTCLMAQLTFCAGSEIPHFFCDLMPLLKLSCSDTHTNKLAIFVFGIIMGISPLACILFSYACIFWAVFKIPSAQGKWKAFSTCSSHLTVVSLFYGTIFAVYLQPASPASTQKDKVAALMCGVVIPMLNPFIYSLRNKNMKEALRKLVGKVASSQS", "length": 313, "header": "tr|F1SAN8-1|F1SAN8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR1I1 PE=3 SV=1 CANONICAL=F1SAN8-1" }, "locus": { "chromosome": "2", "start_pos": 62471298, "end_pos": 62470360, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015106.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015106.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014701.1", "url": "https://www.ensembl.org/id/ENSSSCP00000014701.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAN8", "url": "https://www.uniprot.org/uniprotkb/F1SAN8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523537", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523537", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3X6C2-1", "protein_name": "Olfactory receptor", "gene_name": "OR1I1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPENQTAVSKFLLLGLSEKPEHQIFLFGLFLPMYLVTIFGNLLIILAIITDSHLHTPMYFFLCNLSLVDIFFSSTTVPKMLVNLWTQSKAIPFAGCLAQMYAFHLFGTMDSFLLAVMAIDRFMAIVHPLHYLAIMSPRVCGLLVVGSWLITNLQSIVHTSLMAQLTFCAASEIPHFFCDLMPLLKLSCSDTHTNELVIFAFGIIMGISPLTCILLSYICIFCAVFKIPSAQGKWKAFSTCGSHLTMVTLFYGTIFAVYLQPASPTSLKKDKVAALMCGVVIPMLNPFIYSLRNKNMKAALRKLFSKAATSQS", "length": 313 }, "evidence": [ { "id": "F1SAN8", "url": "https://omabrowser.org/oma/group/F1SAN8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O60431-1", "protein_name": "Olfactory receptor 1I1", "gene_name": "OR1I1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPEKQTEISEFFLQGLSEKPEHQTLLFTMFLSTYLVTIIGNALIILAIITDSHLHTPMYFFLFNLSLVDTLLSSTTVPKMLANIQAQSRAIPFVGCLTQMYAFHLFGTMDSFLLAVMAIDRFVAIVHPQRYLVLMCSPVCGLLLGASWMITNLQSLIHTCLMAQLTFCAGSEISHFFCDLMPLLKLSGSDTHTNELVIFAFGIVVGTSPFSCILLSYIRIFWTVFKIPSTRGKWKAFSTCGLHLTVVSLSYGTIFAVYLQPTSPSSSQKDKAAALMCGVFIPMLNPFIYSIRNKDMKAALGKLIGKVAVPCPRPEQLLDVYHVPGSLLAARDTEMHPIPYPGGVQSLAGNRDME", "length": 355 }, "evidence": [ { "id": "F1SAN8", "url": "https://omabrowser.org/oma/group/F1SAN8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TQU7-1", "protein_name": "Olfactory receptor family 1 subfamily I member 1", "gene_name": "Or1i2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPENQTTVLEFHLMGLSEDPDLQTILFGLFLSMYLVTVFGNLLIILAIISDSHLHTPMYFFLCNLSLVDIFFCSTTVPKMLVNIQTQSRAISFTGCLVQMYAFHLFGTIDSFLLAVMAIDRLVAIAYPLRYSVLMSPHVCALLVGGTWVITNLQSLVHTCLMAQLTFCARSEIPHFFCDLMPLLKLSCSDTHINELVIFAFGIVMGLSPLSCILVSYICIFRAVFRIPSAQGKWKAFSTCGSHLTVVSLFYGTIFTGYLLPASPSSSQKDKAAALMFGVVIPTLNPFIYSLRNKDMKAALRKLGSKAVSFQS", "length": 313 }, "evidence": [ { "id": "F1SAN8", "url": "https://omabrowser.org/oma/group/F1SAN8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SAN8", "url": "https://www.uniprot.org/uniprotkb/F1SAN8" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SAN8", "url": "https://www.uniprot.org/uniprotkb/F1SAN8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAN8", "url": "https://www.uniprot.org/uniprotkb/F1SAN8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SAN8", "url": "https://www.uniprot.org/uniprotkb/F1SAN8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAN8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAN8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAN8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAN8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAQ0-1", "uniprot_ac": "F1SAQ0", "uniprot_id": "F1SAQ0_PIG", "mass": { "chemical_mass": 36839.0, "monoisotopic_mass": 36839.0 }, "refseq": { "ac": "XP_020955360", "name": "sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955360" }, "gene_names": [ { "name": "DEGS2", "type": "recommended", "evidence": [ { "id": "F1SAQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0" } ] }, { "name": "DEGS2", "type": "synonym", "evidence": [ { "id": "XP_020955360", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955360" } ] } ], "protein_names": [ { "name": "sphingolipid 4-desaturase", "type": "recommended", "evidence": [ { "id": "F1SAQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0/entry#names_and_taxonomy" } ] }, { "name": "1.14.19.17", "type": "synonym", "evidence": [ { "id": "F1SAQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0/entry#names_and_taxonomy" } ] }, { "name": "sphingolipid delta(4)-desaturase/C4-monooxygenase DES2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020955360", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955360" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAQ0", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DEGS2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0", "locus": { "chromosome": "7", "start_pos": 121058105, "end_pos": 121076328, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002512", "url": "https://www.ensembl.org/id/ENSSSCG00000002512" } ] } } ], "crossref": [ { "id": "F1SAQ0", "url": "https://alphafold.ebi.ac.uk/entry/F1SAQ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002512", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002512", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03508", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03508", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100739329", "url": "https://www.ncbi.nlm.nih.gov/gene/100739329", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FEGWLFC", "url": "https://omabrowser.org/oma/group/FEGWLFC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12879", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12879", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12879:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12879:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00487", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00487", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08557", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08557", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660661", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020955360", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955360", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAQ0", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAQ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNSAGRSDFEWVYTDQPHTQRRKEMLAKYPAIKALMRPDPRLKWAVTGLVLAQLLACWLVRGLAWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAAHNRWFAVFANLPMGVPYAASFKKYHVDHHRYLGGDGLDVDVPTRLEGWLFCTPARKLLWLALQPFFYSLRPLVVHPKAVTRMEVFNALVQLAADATIFALWGLKPVVYLLASSLLGLGLHPISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHVEHHDFPSIPGCNLPLVRKIAPEYYDHLPQHLSWVKVLWDFVFEDSLGPYARVKRVCKVAEDGL", "length": 323, "header": "tr|F1SAQ0-1|F1SAQ0_PIG Isoform 1 of sphingolipid 4-desaturase OS=Sus scrofa OX=9823 GN=DEGS2 PE=3 SV=3 CANONICAL=F1SAQ0-1" }, "isoforms": [ { "isoform_ac": "F1SAQ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0/entry#F1SAQ0-1", "sequence": { "sequence": "MGNSAGRSDFEWVYTDQPHTQRRKEMLAKYPAIKALMRPDPRLKWAVTGLVLAQLLACWLVRGLAWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAAHNRWFAVFANLPMGVPYAASFKKYHVDHHRYLGGDGLDVDVPTRLEGWLFCTPARKLLWLALQPFFYSLRPLVVHPKAVTRMEVFNALVQLAADATIFALWGLKPVVYLLASSLLGLGLHPISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHVEHHDFPSIPGCNLPLVRKIAPEYYDHLPQHLSWVKVLWDFVFEDSLGPYARVKRVCKVAEDGL", "length": 323, "header": "tr|F1SAQ0-1|F1SAQ0_PIG Isoform 1 of sphingolipid 4-desaturase OS=Sus scrofa OX=9823 GN=DEGS2 PE=3 SV=3 CANONICAL=F1SAQ0-1" }, "locus": { "chromosome": "7", "start_pos": 121076248, "end_pos": 121058520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002790.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002790.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002719.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002719.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ0", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1660661", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "resource": "Reactome", "description": "Sphingolipid de novo biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YWS9-1", "protein_name": "sphingolipid 4-desaturase", "gene_name": "DEGS2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGNRVTRGDFEWVYTEQPHTQRRKEILAKYPRIKALMGPDPHLKWIVSGMVFMQFLACYLVKDLSWKWILFWAYAFGGCINHSLTLAIHDISHNVAFGNKQAKWNRWFAVFANLPVGVPYSASFKKYHIDHHRYLGGDSLDVDIPTDFEGWFFCTPLRKLLWLFLQPLFYSLRPLYVNPKAITQMEIFNALVQFSVDFIIFYLWGLKPIIYLIAGTILCMGLHPISGHFIAEHYMFLKGYETYSYYGPLNWLTFNVGYHMEHHDFPSIPGSKLPMVKKIAAEYYDNLPYHQSWIRVLWDFVFDDSIGPYSRVKRKCKLAKES", "length": 322 }, "evidence": [ { "id": "F1SAQ0", "url": "https://omabrowser.org/oma/group/F1SAQ0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1QW74-1", "protein_name": "sphingolipid 4-desaturase", "gene_name": "degs2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGKAAGRWDFEWVYNEQPHTWRRKEILAKYPEIKSLMGHDPQLKWVVSGMVLTQLLACYMVHELSWKWVLFWAYAFGGCINHSLTLAIHDISHNVAFGTKRARWNRWFAMFANLPIGLPYSASFKKYHIDHHRYLGGDGLDVDIPTDLEGWFFCTPARKVLWLFLQPLFYALRPLIVNPKPVTRLEMLNAAVQFVVDIIIYYFWGLKPIVYLISGSILCMGLHPISGHFIAEHYMFTKGHETYSYYGPLNLITFNVGYHMEHHDFPSIPGSKLPEVKRIAAEYYDSLPQHTSWMRVLWDFVFDDSIGPYARIKRQYTLGKKE", "length": 322 }, "evidence": [ { "id": "F1SAQ0", "url": "https://omabrowser.org/oma/group/F1SAQ0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q0II71-1", "protein_name": "Sphingolipid delta(4)-desaturase/C4-monooxygenase DES2", "gene_name": "DEGS2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGNRAGRSDFEWVYTDQPHTQRRKEMLAKYPAIKALMRPDPYLKWTVTAMVLAQLLACWLAQGLAWRWLFFWAYAFGGCVNHSLTLAIHDISHNTAFGTGRPSRNRWFAIFANLPVGLPYAASFKKYHVDHHRYLGGDGLDVDVPTYFEGRLFCTPARKLLWLALQPFFYTLRPLCVHPKAMTRMELCNTLVQLAADATIYALWGLKPMVYLLASSLLGLGLHPISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHMEHHDFPSIPSCNLPLVRKIAPEYYDHLPQHHSWVKVLWDFVFDDSLGPFARVKRVCKLAENRL", "length": 323 }, "evidence": [ { "id": "F1SAQ0", "url": "https://omabrowser.org/oma/group/F1SAQ0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q564G3-1", "protein_name": "Sphingolipid delta(4)-desaturase/C4-monooxygenase DES2", "gene_name": "Degs2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGNSAARSDFEWVYSDQPHTQRRKEMLAKYPSIKALMRPDPNIKWTVLGMVLVQVLACWLVRGLSWRWLLFWAYAFGGCINHSLTLAIHDISHNTAFGTRCASRNRWFAVFANLPIGLPYATSFKKYHVDHHRYLGGDGLDVDIPTDFEGWFFCTPARKLLWLVLQPFFYSLRPLYVNPKAVTRMEILNALVQLAFNVTIFALWGIKAIVYLLASSLLGLGLHPISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHVEHHDFPSIPGCYLPLVRMIAPEYYDHLPQHHSWVKVLWDFVFEDSLGPYSRVKRKCKLAKDQL", "length": 323 }, "evidence": [ { "id": "F1SAQ0", "url": "https://omabrowser.org/oma/group/F1SAQ0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6QHC5-1", "protein_name": "Sphingolipid delta(4)-desaturase/C4-monooxygenase DES2", "gene_name": "DEGS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNSASRSDFEWVYTDQPHTQRRKEILAKYPAIKALMRPDPRLKWAVLVLVLVQMLACWLVRGLAWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAARNRWLAVFANLPVGVPYAASFKKYHVDHHRYLGGDGLDVDVPTRLEGWFFCTPARKLLWLVLQPFFYSLRPLCVHPKAVTRMEVLNTLVQLAADLAIFALWGLKPVVYLLASSFLGLGLHPISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHVEHHDFPSIPGYNLPLVRKIAPEYYDHLPQHHSWVKVLWDFVFEDSLGPYARVKRVYRLAKDGL", "length": 323 }, "evidence": [ { "id": "F1SAQ0", "url": "https://omabrowser.org/oma/group/F1SAQ0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R2F2-1", "protein_name": "Sphingolipid delta(4)-desaturase/C4-monooxygenase DES2", "gene_name": "Degs2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNSAARSDFEWVYSDQPHTQRRKEMLAKYPAIKALMRPDPHIKWTVSGMVLVQVLACWLVRGLSWRWLLFWAYAFGGCINHSLTLAIHDISHNTAFGTSCVSRNRWFAIFANLPIGLPYATSFKKYHVDHHRYLGGDGLDVDIPTNFEGWFFCTPARKLLWLVLQPFFYSLRPLCVNPKVVTRMEILNALVQLAFDVTIFALWGIKPIVYLLGSSLLGLGLHPISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHMEHHDFPSIPGYYLPLVRKIAPEYYDHLPQHHSWVKVLWDFVFEDSMGPYSRVKRKCKLAKDHL", "length": 323 }, "evidence": [ { "id": "F1SAQ0", "url": "https://omabrowser.org/oma/group/F1SAQ0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ceramide biosynthetic process", "id": "GO:0046513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046513", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ0", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0" } ], "pmid": "" }, { "name": "sphinganine metabolic process", "id": "GO:0006667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006667", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ0", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ0", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sphingolipid delta-4 desaturase activity", "id": "GO:0042284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042284", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ0", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-428260", "name": "DEGS2 oxygenates dihydroceramide", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [ "R-ALL-9025544" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-428260", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-428260" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-9025544", "participant_name": "phytoceramide [endoplasmic reticulum membrane]", "crossref": [ { "id": "139051", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAQ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 323, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAQ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAQ0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ0" }, { "id": "SM01269", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01269" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sphingolipid delta4-desaturase N-terminal", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 43, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAQ2-1", "uniprot_ac": "F1SAQ2", "uniprot_id": "F1SAQ2_PIG", "mass": { "chemical_mass": 57031.0, "monoisotopic_mass": 57031.0 }, "refseq": {}, "gene_names": [ { "name": "CYP46A1", "type": "recommended", "evidence": [ { "id": "F1SAQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ] } ], "protein_names": [ { "name": "Cholesterol 24-hydroxylase", "type": "recommended", "evidence": [ { "id": "F1SAQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2/entry#names_and_taxonomy" } ] }, { "name": "1.14.14.25", "type": "synonym", "evidence": [ { "id": "F1SAQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2/entry#names_and_taxonomy" } ] }, { "name": "Cholesterol 24-monooxygenase", "type": "synonym", "evidence": [ { "id": "F1SAQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2/entry#names_and_taxonomy" } ] }, { "name": "Cholesterol 24S-hydroxylase", "type": "synonym", "evidence": [ { "id": "F1SAQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2/entry#names_and_taxonomy" } ] }, { "name": "Cytochrome P450 46A1", "type": "synonym", "evidence": [ { "id": "F1SAQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "P450 monooxygenase that plays a major role in cholesterol homeostasis in the brain. Primarily catalyzes the hydroxylation (with S stereochemistry) at C-24 of cholesterol side chain, triggering cholesterol diffusion out of neurons and its further degradation. By promoting constant cholesterol elimination in neurons, may activate the mevalonate pathway and coordinate the synthesis of new cholesterol and nonsterol isoprenoids involved in synaptic activity and learning. Further hydroxylates cholesterol derivatives and hormone steroids on both the ring and side chain of these molecules, converting them into active oxysterols involved in lipid signaling and biosynthesis. Acts as an epoxidase converting cholesta-5,24-dien-3beta-ol/desmosterol into (24S),25-epoxycholesterol, an abundant lipid ligand of nuclear NR1H2 and NR1H3 receptors shown to promote neurogenesis in developing brain. May also catalyze the oxidative metabolism of xenobiotics, such as clotrimazole.", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2#function" }, { "database": "UniProtKB", "id": "ARBA00054645", "url": "https://www.uniprot.org/uniprotkb/ARBA00054645#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CYP46A1", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2", "locus": { "chromosome": "7", "start_pos": 120695016, "end_pos": 120661111, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002510", "url": "https://www.ensembl.org/id/ENSSSCG00000002510" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002510", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002510", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20613", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20613", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002401", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002401", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036396", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036396", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WKHQRRT", "url": "https://omabrowser.org/oma/group/WKHQRRT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAQ2", "url": "https://www.orthodb.org/?gene=F1SAQ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24293", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24293", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24293:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24293:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00067", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00067", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193775", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193775", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-211976", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211976", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "22716", "url": "https://www.rhea-db.org/rhea/22716", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46296", "url": "https://www.rhea-db.org/rhea/46296", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46300", "url": "https://www.rhea-db.org/rhea/46300", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46304", "url": "https://www.rhea-db.org/rhea/46304", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46308", "url": "https://www.rhea-db.org/rhea/46308", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46380", "url": "https://www.rhea-db.org/rhea/46380", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46384", "url": "https://www.rhea-db.org/rhea/46384", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46388", "url": "https://www.rhea-db.org/rhea/46388", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46392", "url": "https://www.rhea-db.org/rhea/46392", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53232", "url": "https://www.rhea-db.org/rhea/53232", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53236", "url": "https://www.rhea-db.org/rhea/53236", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53240", "url": "https://www.rhea-db.org/rhea/53240", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53244", "url": "https://www.rhea-db.org/rhea/53244", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53808", "url": "https://www.rhea-db.org/rhea/53808", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAQ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPGLLMLLGSAVLVVFGLCCTFVHRARSRYEHIPGPPRPSFLLGHLPYFWKKDEVCGRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKRFLMSTKYNKDSKMYHAIQTVFGERLFGQGLVSECDYERWHKQRRVMDLAFSRSSLVSLMGIFNEKAEQLVEILEAQADGQTPVSMQDMLTCTTMDILAKAAFGIETSMLLGAQKPLSRKVKLILEGISSSRNTLAKFMPGKWKQLREIRESVRFLRQVGKDWVQRRREALQRGEDVPADILTQILKAEEGAQDDEILLDNFVTFFIAGHETSANHLAFTVMELSRQPEILARLQAEVDEVIGSKRHLDCEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFSPKAPKPKFTYFPFSLGPRSCIGQQFAQMEVKVVMAKLLQRLEFRLVPGQSFGLQEQVTLKPLDPVLCTLQPRGWQPAPPPPPC", "length": 501, "header": "tr|F1SAQ2-1|F1SAQ2_PIG Isoform 1 of Cholesterol 24-hydroxylase OS=Sus scrofa OX=9823 GN=CYP46A1 PE=3 SV=3 CANONICAL=F1SAQ2-1" }, "isoforms": [ { "isoform_ac": "F1SAQ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2/entry#F1SAQ2-1", "sequence": { "sequence": "MSPGLLMLLGSAVLVVFGLCCTFVHRARSRYEHIPGPPRPSFLLGHLPYFWKKDEVCGRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKRFLMSTKYNKDSKMYHAIQTVFGERLFGQGLVSECDYERWHKQRRVMDLAFSRSSLVSLMGIFNEKAEQLVEILEAQADGQTPVSMQDMLTCTTMDILAKAAFGIETSMLLGAQKPLSRKVKLILEGISSSRNTLAKFMPGKWKQLREIRESVRFLRQVGKDWVQRRREALQRGEDVPADILTQILKAEEGAQDDEILLDNFVTFFIAGHETSANHLAFTVMELSRQPEILARLQAEVDEVIGSKRHLDCEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFSPKAPKPKFTYFPFSLGPRSCIGQQFAQMEVKVVMAKLLQRLEFRLVPGQSFGLQEQVTLKPLDPVLCTLQPRGWQPAPPPPPC", "length": 501, "header": "tr|F1SAQ2-1|F1SAQ2_PIG Isoform 1 of Cholesterol 24-hydroxylase OS=Sus scrofa OX=9823 GN=CYP46A1 PE=3 SV=3 CANONICAL=F1SAQ2-1" }, "locus": { "chromosome": "7", "start_pos": 120694446, "end_pos": 120661287, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002788.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002788.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002717.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002717.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-193775", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193775", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts via 24-hydroxycholesterol" }, { "id": "R-SSC-211976", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211976", "resource": "Reactome", "description": "Endogenous sterols" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YXQ1-1", "protein_name": "Cholesterol 24-hydroxylase", "gene_name": "CYP46A1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAVLGGLLLLLALLLLLVAGLYCCYVRRVHAAYDHIPGAPRESFLLGHLPIFWRMMKKQEFLHDLFLEWTKKYGPIIRVNAFHRVSVLILSPEGVKEFLMSPEYPKDRLVYGRIFNLFGVRFLGNGLVTDRNYEHWHKQRKVMDPAFSRTYLIGVMETFNEKAEELMEKLEEKADGKTEFSMLTMMSRVTLDVIAKVAFGLELNALRDDRTPFPHAVTMIMKGMTEMRIPFVKYMPGKQKMIKEVQESVRLLRRVGKECIEKRREAIQSEKEMPTDILTQILKGDALEETRDDENILDNFITFFVAGHETTANQLSFTVMALSQHPEIMERVQAEVDEVLGAKRDIEYEDLGKLKYLSQVLKESMRLYPPVPGTVRWTGKETVIEGVRIPANTTLLFSTYVMGRMERYFTDPLCFNPDRFRKDAPKPYYSYFPFSLGPRSCIGQVFAQMEAKVVMAKLLQRFEFQLVPGQCFKLLDTGTLRPLDGVMSDGKLSLAMHRAAALFSPEVTERPSAAASCTLQRRTVSPCSLSQTHRCPLGSQPGAQVRAAPRREGTHGKVHSQILAVPEPSPCSDGWQLQVSLIRAVNSAYSFWIVAQSFHVCEEFPVGFLSSFLC", "length": 614 }, "evidence": [ { "id": "F1SAQ2", "url": "https://omabrowser.org/oma/group/F1SAQ2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LFA2-1", "protein_name": "Cholesterol 24-hydroxylase", "gene_name": "Cyp46a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGLLLLGSAVLLAFGLCCTFVHRARSRYEHIPGPPRPSFLLGHLPYFWKKDEACGRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRAIQTVFGERLFGQGLVSECDYGRWYKQRRVMDLAFSRSSLVSLMGTFNEKAEQLMEILEAKADGQTPVSMQDMLTCATIDILAKAAFGMETSMLLGAQKPLSQAVKVMLEGISASRNTLAKFMPGKRKQLREIRESIRLLRQVGKDWVQRRREALKRGEDVPADILTQILKAEEGAQDDEVLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVVGSKRHLDYEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGAPKPRFTYFPFSLGHRSCIGQQFAQGKASLGKTCSPQRNHMGPPWSSSGTACSPTVPGYPAPSTPCWVPGFWRQHLRLLLAINLTLGL", "length": 507 }, "evidence": [ { "id": "F1SAQ2", "url": "https://omabrowser.org/oma/group/F1SAQ2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O48786-1", "protein_name": "Cytochrome P450 734A1", "gene_name": "CYP734A1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEEESSSWFIPKVLVLSVILSLVIVKGMSLLWWRPRKIEEHFSKQGIRGPPYHFFIGNVKELVGMMLKASSHPMPFSHNILPRVLSFYHHWRKIYGATFLVWFGPTFRLTVADPDLIREIFSKSEFYEKNEAHPLVKQLEGDGLLSLKGEKWAHHRKIISPTFHMENLKLLVPVVLKSVTDMVDKWSDKLSENGEVEVDVYEWFQILTEDVISRTAFGSSYEDGRAVFRLQAQQMLLCAEAFQKVFIPGYRFFPTRGNLKSWKLDKEIRKSLLKLIERRRQNAIDGEGEECKEPAAKDLLGLMIQAKNVTVQDIVEECKSFFFAGKQTTSNLLTWTTILLSMHPEWQAKARDEVLRVCGSRDVPTKDHVVKLKTLSMILNESLRLYPPIVATIRRAKSDVKLGGYKIPCGTELLIPIIAVHHDQAIWGNDVNEFNPARFADGVPRAAKHPVGFIPFGLGVRTCIGQNLAILQAKLTLAVMIQRFTFHLAPTYQHAPTVLMLLYPQHGAPITFRRLTNHED", "length": 520 }, "evidence": [ { "id": "F1SAQ2", "url": "https://omabrowser.org/oma/group/F1SAQ2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9WVK8-1", "protein_name": "Cholesterol 24-hydroxylase", "gene_name": "Cyp46a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSPGLLLLGSAVLLAFGLCCTFVHRARSRYEHIPGPPRPSFLLGHLPYFWKKDEDCGRVLQDVFLDWAKKYGPVVRVNVFYKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECDYGRWYKQRKVMDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTCATIDILAKAAFGMETSMLLGAQKPLSQAVKVMLEGISASRNTLAKFMPGKRKQLREIRESIRLLRQVGKDWVQRRREALKRGEDMPADILTQILKAEEGAQDDEVLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVVGSKRHLDYEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGAPKPRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRIEFRLVPGQRFGLQEQATLKPLDPVLCTLRPRGWQPAPPPPPC", "length": 500 }, "evidence": [ { "id": "F1SAQ2", "url": "https://omabrowser.org/oma/group/F1SAQ2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y6A2-1", "protein_name": "Cholesterol 24-hydroxylase", "gene_name": "CYP46A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSPGLLLLGSAVLLAFGLCCTFVHRARSRYEHIPGPPRPSFLLGHLPCFWKKDEVGGRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKMYRALQTVFGERLFGQGLVSECNYERWHKQRRVIDLAFSRSSLVSLMETFNEKAEQLVEILEAKADGQTPVSMQDMLTYTAMDILAKAAFGMETSMLLGAQKPLSQAVKLMLEGITASRNTLAKFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEEVPADILTQILKAEEGAQDDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPGAPKPRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRLEFRLVPGQRFGLQEQATLKPLDPVLCTLRPRGWQPAPPPPPC", "length": 500 }, "evidence": [ { "id": "F1SAQ2", "url": "https://omabrowser.org/oma/group/F1SAQ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" }, { "name": "steroid hydroxylase activity", "id": "GO:0008395", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008395", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" }, { "name": "cholesterol 24-hydroxylase activity", "id": "GO:0033781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033781", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" }, { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "xenobiotic metabolic process", "id": "GO:0006805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006805", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" }, { "name": "cholesterol catabolic process", "id": "GO:0006707", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006707", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" }, { "name": "regulation of long-term synaptic potentiation", "id": "GO:1900271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900271", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" }, { "name": "progesterone metabolic process", "id": "GO:0042448", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042448", "evidence": [ { "database": "UniProtKB", "id": "F1SAQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAQ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "22716", "name": "", "equation": "cholesterol + reduced [NADPH--hemoprotein reductase] + O2 = (24S)-hydroxycholesterol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "22716", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/22716" } ] }, { "id": "46296", "name": "", "equation": "testosterone + reduced [NADPH--hemoprotein reductase] + O2 = 6beta,17beta-dihydroxyandrost-4-en-3-one + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46296", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46296" } ] }, { "id": "46300", "name": "", "equation": "testosterone + reduced [NADPH--hemoprotein reductase] + O2 = 2-hydroxytestosterone + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46300", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46300" } ] }, { "id": "46304", "name": "", "equation": "testosterone + reduced [NADPH--hemoprotein reductase] + O2 = 16beta,17beta-dihydroxyandrost-4-en-3-one + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46304", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46304" } ] }, { "id": "46308", "name": "", "equation": "progesterone + reduced [NADPH--hemoprotein reductase] + O2 = 17alpha-hydroxyprogesterone + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46308", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46308" } ] }, { "id": "46380", "name": "", "equation": "7alpha-hydroxycholesterol + reduced [NADPH--hemoprotein reductase] + O2 = (24S)-7alpha-dihydroxycholesterol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46380", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46380" } ] }, { "id": "46384", "name": "", "equation": "(24S)-hydroxycholesterol + reduced [NADPH--hemoprotein reductase] + O2 = 24S,25-dihydroxycholesterol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46384", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46384" } ] }, { "id": "46388", "name": "", "equation": "(24S)-hydroxycholesterol + reduced [NADPH--hemoprotein reductase] + O2 = (24S,25R)-24,26-dihydroxycholesterol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46388", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46388" } ] }, { "id": "46392", "name": "", "equation": "4beta-hydroxycholesterol + reduced [NADPH--hemoprotein reductase] + O2 = 4beta,24S-dihydroxycholesterol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46392", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46392" } ] }, { "id": "53232", "name": "", "equation": "desmosterol + reduced [NADPH--hemoprotein reductase] + O2 = (24S)-25-epoxycholesterol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53232", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53232" } ] }, { "id": "53236", "name": "", "equation": "desmosterol + reduced [NADPH--hemoprotein reductase] + O2 = (24Z),26-hydroxydesmosterol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53236", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53236" } ] }, { "id": "53240", "name": "", "equation": "7-dehydrocholesterol + reduced [NADPH--hemoprotein reductase] + O2 = cholesta-5,7-dien-3beta,25-diol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53240", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53240" } ] }, { "id": "53244", "name": "", "equation": "7-dehydrocholesterol + reduced [NADPH--hemoprotein reductase] + O2 = cholesta-5,7-dien-3beta,24S-diol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53244", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53244" } ] }, { "id": "53808", "name": "", "equation": "cholestanol + reduced [NADPH--hemoprotein reductase] + O2 = (24S)-hydroxycholestanol + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53808", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53808" } ] }, { "id": "R-SSC-192061", "name": "CYP46A1 24-hydroxylates CHOL", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-192061", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-192061" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAR3-1", "uniprot_ac": "F1SAR3", "uniprot_id": "F1SAR3_PIG", "mass": { "chemical_mass": 13334.0, "monoisotopic_mass": 13334.0 }, "refseq": {}, "gene_names": [ { "name": "TCL1A", "type": "recommended", "evidence": [ { "id": "F1SAR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ] } ], "protein_names": [ { "name": "T-cell leukemia/lymphoma protein 1A", "type": "recommended", "evidence": [ { "id": "F1SAR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAR3/entry#names_and_taxonomy" } ] }, { "name": "Oncogene TCL-1", "type": "synonym", "evidence": [ { "id": "F1SAR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAR3/entry#names_and_taxonomy" } ] }, { "name": "Protein p14 TCL1", "type": "synonym", "evidence": [ { "id": "F1SAR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAR3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TCL1A", "url": "https://www.uniprot.org/uniprotkb/F1SAR3", "locus": { "chromosome": "7", "start_pos": 116934948, "end_pos": 116939320, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002498", "url": "https://www.ensembl.org/id/ENSSSCG00000002498" } ] } } ], "crossref": [ { "id": "F1SAR3", "url": "https://alphafold.ebi.ac.uk/entry/F1SAR3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002498", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002498", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036672", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036672", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14060", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14060", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14060:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14060:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01840", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01840", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEVPFFRVHTALHPDHLWIWAKSVYVDENQRTWLPIITETESGRQVLMRQEDVPLMEALCPSQLTPYPLPLMWQLYPGRRYRGSDSSFWRIVYHIKFSGMEDMLLEQLPDGG", "length": 113, "header": "tr|F1SAR3-1|F1SAR3_PIG Isoform 1 of T-cell leukemia/lymphoma protein 1A OS=Sus scrofa OX=9823 GN=TCL1A PE=3 SV=4 CANONICAL=F1SAR3-1" }, "isoforms": [ { "isoform_ac": "F1SAR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SAR3/entry#F1SAR3-1", "sequence": { "sequence": "MGEVPFFRVHTALHPDHLWIWAKSVYVDENQRTWLPIITETESGRQVLMRQEDVPLMEALCPSQLTPYPLPLMWQLYPGRRYRGSDSSFWRIVYHIKFSGMEDMLLEQLPDGG", "length": 113, "header": "tr|F1SAR3-1|F1SAR3_PIG Isoform 1 of T-cell leukemia/lymphoma protein 1A OS=Sus scrofa OX=9823 GN=TCL1A PE=3 SV=4 CANONICAL=F1SAR3-1" }, "locus": { "chromosome": "7", "start_pos": 116939261, "end_pos": 116934948, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002776.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002776.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002705.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002705.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SAR3", "url": "https://www.uniprot.org/uniprotkb/F1SAR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAR3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 113, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAR3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAR3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAS4-1", "uniprot_ac": "F1SAS4", "uniprot_id": "F1SAS4_PIG", "mass": { "chemical_mass": 16226.0, "monoisotopic_mass": 16226.0 }, "refseq": {}, "gene_names": [ { "name": "CST7", "type": "recommended", "evidence": [ { "id": "F1SAS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ] } ], "protein_names": [ { "name": "Cystatin F", "type": "synonym", "evidence": [ { "id": "F1SAS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAS4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CST7", "url": "https://www.uniprot.org/uniprotkb/F1SAS4", "locus": { "chromosome": "17", "start_pos": 30766472, "end_pos": 30758000, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007131", "url": "https://www.ensembl.org/id/ENSSSCG00000007131" } ] } } ], "crossref": [ { "id": "F1SAS4", "url": "https://alphafold.ebi.ac.uk/entry/F1SAS4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007131", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007131", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00042", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WLQHFEV", "url": "https://omabrowser.org/oma/group/WLQHFEV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47141:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47141:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAS4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPARVLLAVCTLVLVATGGPSQDFCSQILDSGVRPGCPKTIETNDPDVLRAARHSAESFNNCSNDAFLFKESHVSKALVQIVKGLKFMLDMDISRTTCKKLGHHASLDNCSFQTNHSLQWTFSCYSEVWVVPWLQSVEVSVLRCH", "length": 146, "header": "tr|F1SAS4-1|F1SAS4_PIG Isoform 1 of Cystatin F OS=Sus scrofa OX=9823 GN=CST7 PE=3 SV=1 CANONICAL=F1SAS4-1" }, "isoforms": [ { "isoform_ac": "F1SAS4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAS4/entry#F1SAS4-1", "sequence": { "sequence": "MRPARVLLAVCTLVLVATGGPSQDFCSQILDSGVRPGCPKTIETNDPDVLRAARHSAESFNNCSNDAFLFKESHVSKALVQIVKGLKFMLDMDISRTTCKKLGHHASLDNCSFQTNHSLQWTFSCYSEVWVVPWLQSVEVSVLRCH", "length": 146, "header": "tr|F1SAS4-1|F1SAS4_PIG Isoform 1 of Cystatin F OS=Sus scrofa OX=9823 GN=CST7 PE=3 SV=1 CANONICAL=F1SAS4-1" }, "locus": { "chromosome": "17", "start_pos": 30766325, "end_pos": 30758024, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007803.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007803.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007594.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007594.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HE38-1", "protein_name": "Cystatin-F", "gene_name": "Cst7", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWLAILLALCCLTSDSQGAYSPDFCSKDLNSSVKPGFPKKINTNNPGVLKAARHSVEKFNNCTNDIFLFKESRVSKALVQVVKGLKYMLEVEIGRTTCRKTTHPNLDNCDFQTNPALKRILHCYSEVWVIPWLHSFQVPILHCH", "length": 144 }, "evidence": [ { "id": "F1SAS4", "url": "https://omabrowser.org/oma/group/F1SAS4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O76096-1", "protein_name": "Cystatin-F", "gene_name": "CST7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRAAGTLLAFCCLVLSTTGGPSPDTCSQDLNSRVKPGFPKTIKTNDPGVLQAARYSVEKFNNCTNDMFLFKESRITRALVQIVKGLKYMLEVEIGRTTCKKNQHLRLDDCDFQTNHTLKQTLSCYSEVWVVPWLQHFEVPVLRCH", "length": 145 }, "evidence": [ { "id": "F1SAS4", "url": "https://omabrowser.org/oma/group/F1SAS4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O89098-1", "protein_name": "Cystatin-F", "gene_name": "Cst7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWLAILLALCCLTSDTHGARPPDFCSKDLISSVKPGFPKTIETNNPGVLKAARHSVEKFNNCTNDIFLFKESHVSKALVQVVKGLKYMLEVKIGRTTCRKTMHHQLDNCDFQTNPALKRTLYCYSEVWVIPWLHSFEVPVLLCQ", "length": 144 }, "evidence": [ { "id": "F1SAS4", "url": "https://omabrowser.org/oma/group/F1SAS4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of microglial cell activation", "id": "GO:1903979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903979", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "lysosomal protein catabolic process", "id": "GO:1905146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905146", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "positive regulation of myelination", "id": "GO:0031643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031643", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protease binding", "id": "GO:0002020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002020", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "cysteine-type endopeptidase inhibitor activity", "id": "GO:0004869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004869", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "late endosome", "id": "GO:0005770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005770", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" }, { "name": "multivesicular body", "id": "GO:0005771", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005771", "evidence": [ { "database": "UniProtKB", "id": "F1SAS4", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAS4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 146, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAS4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAS4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAS4" }, { "id": "SM00043", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00043" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cystatin", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 146, "start_aa": "Val", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 116, "end_pos": 118 }, { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAT4-1", "uniprot_ac": "F1SAT4", "uniprot_id": "F1SAT4_PIG", "mass": { "chemical_mass": 68166.0, "monoisotopic_mass": 68166.0 }, "refseq": {}, "gene_names": [ { "name": "GZF1", "type": "recommended", "evidence": [ { "id": "F1SAT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ] } ], "protein_names": [ { "name": "GDNF-inducible zinc finger protein 1", "type": "recommended", "evidence": [ { "id": "F1SAT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAT4/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger protein 336", "type": "synonym", "evidence": [ { "id": "F1SAT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAT4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcriptional repressor that binds the GZF1 responsive element (GRE) (consensus: 5'-TGCGCN[TG][CA]TATA-3'). May be regulating VSX2/HOX10 expression.", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4#function" }, { "database": "UniProtKB", "id": "ARBA00053896", "url": "https://www.uniprot.org/uniprotkb/ARBA00053896#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GZF1", "url": "https://www.uniprot.org/uniprotkb/F1SAT4", "locus": { "chromosome": "17", "start_pos": 30359845, "end_pos": 30351497, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007117", "url": "https://www.ensembl.org/id/ENSSSCG00000007117" } ] } } ], "crossref": [ { "id": "F1SAT4", "url": "https://alphafold.ebi.ac.uk/entry/F1SAT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007117", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007117", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DQECVDQ", "url": "https://omabrowser.org/oma/group/DQECVDQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515:SF56", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515:SF56", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAT4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEMAEKLKCLDLSETCFQLKKQMLESVLLELQNFSESQEVEEGGGSQVAAAAAAVDPNTRGAGVAGDRPLTSSLPGSSDPQAERISNGLLPALPPRKSREKPDKRKEVVKPPYPKIRRASGRLAGRKVFVEIPKKKYTRRLREQQGSAASDAGDCGAPQEPSPDAVGTEGEPRTKEEARDASAREAETALPEARPGEGEEDEGAAAEEGTLGTRRSDFPCTSCGKAFLYEKSFLKHIRHHHGVATEVVHRCDTCGQTFANRCNLRGHQRHVHSSERRFPCELCGKKFKRKKDVKRHVVQVHEGGGERHQCQQCGKGLSSKTALRLHERTHTGHRPYGCPECQAAFSQPSALKTHLRIHTGEKPFVCDECGARFTQNHMLIYHKRCHTGERPFMCETCGKSFASKEYLKHHNRIHTGSKPFKCEVCFRTFAQRNSLYQHIKVHTGERPYCCDQCGKQFTQLNALQRHHRIHTGEKPFMCNACGRTFTDKSTLRRHTSIHDKTTPWKSFLVIVDGSPKNDDGHKTEQPDEEYATAKLSDKLLSFTENGHFHNLATVQGSVPPVHEDRLADPACKSDGPVVSQDTLLATAISELSELTPQADPGPEQLHSLTSME", "length": 613, "header": "tr|F1SAT4-1|F1SAT4_PIG Isoform 1 of GDNF-inducible zinc finger protein 1 OS=Sus scrofa OX=9823 GN=GZF1 PE=3 SV=4 CANONICAL=F1SAT4-1" }, "isoforms": [ { "isoform_ac": "F1SAT4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAT4/entry#F1SAT4-1", "sequence": { "sequence": "MLEMAEKLKCLDLSETCFQLKKQMLESVLLELQNFSESQEVEEGGGSQVAAAAAAVDPNTRGAGVAGDRPLTSSLPGSSDPQAERISNGLLPALPPRKSREKPDKRKEVVKPPYPKIRRASGRLAGRKVFVEIPKKKYTRRLREQQGSAASDAGDCGAPQEPSPDAVGTEGEPRTKEEARDASAREAETALPEARPGEGEEDEGAAAEEGTLGTRRSDFPCTSCGKAFLYEKSFLKHIRHHHGVATEVVHRCDTCGQTFANRCNLRGHQRHVHSSERRFPCELCGKKFKRKKDVKRHVVQVHEGGGERHQCQQCGKGLSSKTALRLHERTHTGHRPYGCPECQAAFSQPSALKTHLRIHTGEKPFVCDECGARFTQNHMLIYHKRCHTGERPFMCETCGKSFASKEYLKHHNRIHTGSKPFKCEVCFRTFAQRNSLYQHIKVHTGERPYCCDQCGKQFTQLNALQRHHRIHTGEKPFMCNACGRTFTDKSTLRRHTSIHDKTTPWKSFLVIVDGSPKNDDGHKTEQPDEEYATAKLSDKLLSFTENGHFHNLATVQGSVPPVHEDRLADPACKSDGPVVSQDTLLATAISELSELTPQADPGPEQLHSLTSME", "length": 613, "header": "tr|F1SAT4-1|F1SAT4_PIG Isoform 1 of GDNF-inducible zinc finger protein 1 OS=Sus scrofa OX=9823 GN=GZF1 PE=3 SV=4 CANONICAL=F1SAT4-1" }, "locus": { "chromosome": "17", "start_pos": 30358283, "end_pos": 30352909, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007789.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007789.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007580.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007580.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SAT4", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAT4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 613, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAT4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAT4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAT4" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 219, "end_pos": 246, "start_aa": "Phe", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 34, "end_pos": 36 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAT5-1", "uniprot_ac": "F1SAT5", "uniprot_id": "F1SAT5_PIG", "mass": { "chemical_mass": 15816.0, "monoisotopic_mass": 15816.0 }, "refseq": { "ac": "XP_003134343", "name": "NTF2-related export protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134343" }, "gene_names": [ { "name": "NXT1", "type": "recommended", "evidence": [ { "id": "F1SAT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" } ] }, { "name": "NXT1", "type": "synonym", "evidence": [ { "id": "XP_003134343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134343" } ] } ], "protein_names": [ { "name": "NTF2-related export protein", "type": "recommended", "evidence": [ { "id": "F1SAT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAT5/entry#names_and_taxonomy" } ] }, { "name": "NTF2-related export protein 1", "type": "synonym", "evidence": [ { "id": "XP_003134343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134343" } ] } ], "function": [ { "annotation": "Has a role in nuclear-cytoplasmic transport of proteins and mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5#function" }, { "database": "UniProtKB", "id": "RU369002", "url": "https://www.uniprot.org/uniprotkb/RU369002#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NXT1", "url": "https://www.uniprot.org/uniprotkb/F1SAT5", "locus": { "chromosome": "17", "start_pos": 30341628, "end_pos": 30338391, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007119", "url": "https://www.ensembl.org/id/ENSSSCG00000007119" } ] } } ], "crossref": [ { "id": "F1SAT5", "url": "https://alphafold.ebi.ac.uk/entry/F1SAT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007119", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007119", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00780", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00780", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514739", "url": "https://www.ncbi.nlm.nih.gov/gene/100514739", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032710", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032710", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514739", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514739", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "THAFTQT", "url": "https://omabrowser.org/oma/group/THAFTQT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAT5", "url": "https://www.orthodb.org/?gene=F1SAT5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12612", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12612", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02136", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02136", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-159236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003134343", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134343", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASVDFKTYVDQACRAAEEFVNVYYSTMDKRRRLLSRLYTGTATLVWNGNAVSGQESLSEFFEMLPSSEFQINVVDCQPVHDDATPSQTTVLVVICGTVKFEGNKQRDFNQNFILTAQASPSNAVWKIASDCFRFQDWAC", "length": 140, "header": "tr|F1SAT5-1|F1SAT5_PIG Isoform 1 of NTF2-related export protein OS=Sus scrofa OX=9823 GN=NXT1 PE=4 SV=1 CANONICAL=F1SAT5-1" }, "isoforms": [ { "isoform_ac": "F1SAT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SAT5/entry#F1SAT5-1", "sequence": { "sequence": "MASVDFKTYVDQACRAAEEFVNVYYSTMDKRRRLLSRLYTGTATLVWNGNAVSGQESLSEFFEMLPSSEFQINVVDCQPVHDDATPSQTTVLVVICGTVKFEGNKQRDFNQNFILTAQASPSNAVWKIASDCFRFQDWAC", "length": 140, "header": "tr|F1SAT5-1|F1SAT5_PIG Isoform 1 of NTF2-related export protein OS=Sus scrofa OX=9823 GN=NXT1 PE=4 SV=1 CANONICAL=F1SAT5-1" }, "locus": { "chromosome": "17", "start_pos": 30341470, "end_pos": 30341051, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007791.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007791.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007582.1", "url": "https://www.ensembl.org/id/ENSSSCP00000007582.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 85, "start_aa": "Thr", "end_pos": 85, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr85", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514739", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514739", "resource": "KEGG Pathway" }, { "id": "R-SSC-159236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159236", "resource": "Reactome", "description": "Transport of Mature mRNA derived from an Intron-Containing Transcript" } ], "orthologs": [ { "uniprot_canonical_ac": "B2RZ65-1", "protein_name": "NTF2-related export protein", "gene_name": "Nxt1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASVDFKTYVDQACRAAEEFVNVYYTTMDNRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQINVVDCQPVHDEATPSQTTVLVVICGTVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAS", "length": 140 }, "evidence": [ { "id": "F1SAT5", "url": "https://omabrowser.org/oma/group/F1SAT5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3I3T3-1", "protein_name": "NTF2-related export protein", "gene_name": "Nxt1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLNEFFEMLPSSEFQINVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPTNTVWKIASDCFRFQDWAS", "length": 140 }, "evidence": [ { "id": "F1SAT5", "url": "https://omabrowser.org/oma/group/F1SAT5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9QZV9-1", "protein_name": "NTF2-related export protein 1", "gene_name": "Nxt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDDATPSQTTVLVVICGTVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAS", "length": 140 }, "evidence": [ { "id": "F1SAT5", "url": "https://omabrowser.org/oma/group/F1SAT5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UKK6-1", "protein_name": "NTF2-related export protein 1", "gene_name": "NXT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASVDFKTYVDQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNKQRDFNQNFILTAQASPSNTVWKIASDCFRFQDWAS", "length": 140 }, "evidence": [ { "id": "F1SAT5", "url": "https://omabrowser.org/oma/group/F1SAT5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "poly(A)+ mRNA export from nucleus", "id": "GO:0016973", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016973", "evidence": [ { "database": "UniProtKB", "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" } ], "pmid": "" }, { "name": "nuclear pore central transport channel", "id": "GO:0044613", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044613", "evidence": [ { "database": "UniProtKB", "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F1SAT5", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAT5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 140, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAT5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAT5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAT5" }, { "id": "PS50177", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50177" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NTF2", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 135, "start_aa": "Ala", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 85 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAU0-1", "uniprot_ac": "F1SAU0", "uniprot_id": "F1SAU0_PIG", "mass": { "chemical_mass": 48252.0, "monoisotopic_mass": 48252.0 }, "refseq": { "ac": "XP_005672811", "name": "hepatocyte nuclear factor 3-beta isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672811" }, "gene_names": [ { "name": "FOXA2", "type": "recommended", "evidence": [ { "id": "F1SAU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ] }, { "name": "FOXA2", "type": "synonym", "evidence": [ { "id": "XP_005672811", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672811" } ] } ], "protein_names": [ { "name": "Forkhead box A2", "type": "synonym", "evidence": [ { "id": "F1SAU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAU0/entry#names_and_taxonomy" } ] }, { "name": "hepatocyte nuclear factor 3-beta isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005672811", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672811" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FOXA2", "url": "https://www.uniprot.org/uniprotkb/F1SAU0", "locus": { "chromosome": "17", "start_pos": 29997401, "end_pos": 30001707, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007114", "url": "https://www.ensembl.org/id/ENSSSCG00000007114" } ] } } ], "crossref": [ { "id": "F1SAU0", "url": "https://alphafold.ebi.ac.uk/entry/F1SAU0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007114", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007114", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20039", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20039", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513828", "url": "https://www.ncbi.nlm.nih.gov/gene/100513828", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018533", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018533", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030456", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030456", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050211", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050211", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SAU0", "url": "https://www.orthodb.org/?gene=F1SAU0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11829", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11829", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11829:SF167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11829:SF167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00250", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00250", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08430", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08430", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09354", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09354", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005672811", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672811", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAU0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAU0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGAVKMEGHEPSDWSSYYAEPEGYSSVSNMNAGLGMNGMNTYMSMSAAAMGSGSGNMSAGSMNMSSYVGAGMSPSLAGMSPGAGAMAGMGGSAGAAGVAGMGPHLSPSLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKQLALKEASGAAGGGKKTAAGAQASQGQLGEAAGPASETAAGTESPHSSASPCQEHKRGGLGELKGTPATALSPPEPAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHGHHHHQPHKMDLKAYEQVMHYPGYGSPMPGSLAMGPVTNKAGLDASPLAADTSYYQGVYSRPIMNSS", "length": 457, "header": "tr|F1SAU0-1|F1SAU0_PIG Isoform 1 of Forkhead box A2 OS=Sus scrofa OX=9823 GN=FOXA2 PE=4 SV=2 CANONICAL=F1SAU0-1" }, "isoforms": [ { "isoform_ac": "F1SAU0-1", "url": "https://www.uniprot.org/uniprotkb/F1SAU0/entry#F1SAU0-1", "sequence": { "sequence": "MLGAVKMEGHEPSDWSSYYAEPEGYSSVSNMNAGLGMNGMNTYMSMSAAAMGSGSGNMSAGSMNMSSYVGAGMSPSLAGMSPGAGAMAGMGGSAGAAGVAGMGPHLSPSLSPLGGQAAGAMGGLAPYANMNSMSPMYGQAGLSRARDPKTYRRSYTHAKPPYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRHSLSFNDCFLKVPRSPDKPGKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKQLALKEASGAAGGGKKTAAGAQASQGQLGEAAGPASETAAGTESPHSSASPCQEHKRGGLGELKGTPATALSPPEPAPSPGQQQQAAAHLLGPPHHPGLPPEAHLKPEHHYAFNHPFSINNLMSSEQQHHHGHHHHQPHKMDLKAYEQVMHYPGYGSPMPGSLAMGPVTNKAGLDASPLAADTSYYQGVYSRPIMNSS", "length": 457, "header": "tr|F1SAU0-1|F1SAU0_PIG Isoform 1 of Forkhead box A2 OS=Sus scrofa OX=9823 GN=FOXA2 PE=4 SV=2 CANONICAL=F1SAU0-1" }, "locus": { "chromosome": "17", "start_pos": 30000476, "end_pos": 29998089, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007786.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007786.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007577.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007577.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" }, { "name": "endocrine pancreas development", "id": "GO:0031018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031018", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" }, { "name": "regulation of blood coagulation", "id": "GO:0030193", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030193", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" }, { "name": "anatomical structure morphogenesis", "id": "GO:0009653", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009653", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" }, { "name": "negative regulation of epithelial to mesenchymal transition", "id": "GO:0010719", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010719", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" }, { "name": "dopaminergic neuron differentiation", "id": "GO:0071542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071542", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SAU0", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAU0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 457, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAU0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAU0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAU0" }, { "id": "PS50039", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50039" }, { "id": "PRU00089", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fork-head", "eco_id": "ECO_0000259", "start_pos": 159, "end_pos": 253, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 455, "end_pos": 457 }, { "start_pos": 57, "end_pos": 59 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAU2-1", "uniprot_ac": "F1SAU2", "uniprot_id": "F1SAU2_PIG", "mass": { "chemical_mass": 47134.0, "monoisotopic_mass": 47134.0 }, "refseq": {}, "gene_names": [ { "name": "PAX1", "type": "recommended", "evidence": [ { "id": "F1SAU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ] } ], "protein_names": [ { "name": "Paired box 1", "type": "synonym", "evidence": [ { "id": "F1SAU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAU2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PAX1", "url": "https://www.uniprot.org/uniprotkb/F1SAU2", "locus": { "chromosome": "17", "start_pos": 29431990, "end_pos": 29422129, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007112", "url": "https://www.ensembl.org/id/ENSSSCG00000007112" } ] } } ], "crossref": [ { "id": "F1SAU2", "url": "https://alphafold.ebi.ac.uk/entry/F1SAU2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007112", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007112", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00131", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00131", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45636", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45636", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45636:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45636:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00292", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00292", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAU2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAU2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFTLGLGSRAWRVSWERAAAAAAGPGTGGGALGGGARRSSSPRPGRRGSRLARALPLCLSRGCGARALPDRAGPSPGRLGARQLARPRAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASKQPPPQPALPYNHIYQYPYPSPVSPTGAKMGSHHGVPGTAGHVSIPRSWPSAHSVSNILGIRTFMEQTGALAGSEGAAYSPKMEDWAGVNRTAFPASPSVNGLEKPALEADIKYTQSASGLSAVGGFLPACAYPASNQHGVYSSPAGGYLAPGPPWPPAAQGPPLAPPGAGVTVHGGELAAAMTFKHPSREVADRKPPSPGGKAPDGLGSLHGLPIPASTS", "length": 454, "header": "tr|F1SAU2-1|F1SAU2_PIG Isoform 1 of Paired box 1 OS=Sus scrofa OX=9823 GN=PAX1 PE=4 SV=4 CANONICAL=F1SAU2-1" }, "isoforms": [ { "isoform_ac": "F1SAU2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAU2/entry#F1SAU2-1", "sequence": { "sequence": "MKFTLGLGSRAWRVSWERAAAAAAGPGTGGGALGGGARRSSSPRPGRRGSRLARALPLCLSRGCGARALPDRAGPSPGRLGARQLARPRAMEQTYGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPNVVKHIRDYKQGDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGSLAQPGPYEASKQPPPQPALPYNHIYQYPYPSPVSPTGAKMGSHHGVPGTAGHVSIPRSWPSAHSVSNILGIRTFMEQTGALAGSEGAAYSPKMEDWAGVNRTAFPASPSVNGLEKPALEADIKYTQSASGLSAVGGFLPACAYPASNQHGVYSSPAGGYLAPGPPWPPAAQGPPLAPPGAGVTVHGGELAAAMTFKHPSREVADRKPPSPGGKAPDGLGSLHGLPIPASTS", "length": 454, "header": "tr|F1SAU2-1|F1SAU2_PIG Isoform 1 of Paired box 1 OS=Sus scrofa OX=9823 GN=PAX1 PE=4 SV=4 CANONICAL=F1SAU2-1" }, "locus": { "chromosome": "17", "start_pos": 29430901, "end_pos": 29422129, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007784.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007784.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007575.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007575.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 259, "start_aa": "Thr", "end_pos": 259, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr259", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "embryo development ending in birth or egg hatching", "id": "GO:0009792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009792", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "pmid": "" }, { "name": "skeletal system development", "id": "GO:0001501", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001501", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "pmid": "" }, { "name": "sclerotome development", "id": "GO:0061056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061056", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SAU2", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAU2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 454, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAU2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAU2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAU2" }, { "id": "PS51057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Paired", "eco_id": "ECO_0000259", "start_pos": 94, "end_pos": 220, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 259 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 323, "end_pos": 325 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAU4-1", "uniprot_ac": "F1SAU4", "uniprot_id": "F1SAU4_PIG", "mass": { "chemical_mass": 36205.0, "monoisotopic_mass": 36205.0 }, "refseq": { "ac": "XP_020933852", "name": "homeobox protein Nkx-2.4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933852" }, "gene_names": [ { "name": "NKX2-4", "type": "recommended", "evidence": [ { "id": "F1SAU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ] }, { "name": "NKX2-4", "type": "synonym", "evidence": [ { "id": "XP_020933852", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933852" } ] } ], "protein_names": [ { "name": "NK2 homeobox 4", "type": "synonym", "evidence": [ { "id": "F1SAU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAU4/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein Nkx-2.4", "type": "synonym", "evidence": [ { "id": "XP_020933852", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933852" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NKX2-4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4", "locus": { "chromosome": "17", "start_pos": 29199618, "end_pos": 29201133, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007110", "url": "https://www.ensembl.org/id/ENSSSCG00000007110" } ] } } ], "crossref": [ { "id": "F1SAU4", "url": "https://alphafold.ebi.ac.uk/entry/F1SAU4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007110", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007110", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102158293", "url": "https://www.ncbi.nlm.nih.gov/gene/102158293", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102158293", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158293", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VSQFPHS", "url": "https://omabrowser.org/oma/group/VSQFPHS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAU4", "url": "https://www.orthodb.org/?gene=F1SAU4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24340", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24340", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24340:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24340:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020933852", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933852", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAU4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSPKHTTPFSVSDILSPIEETYKKFGGAMDSAPPGLGASLGAAAAAYRAPPPGPSSQAAAVAGMQPPHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFPHGAMGGYCNGGLGNMGELPAYTDGMRGGAAAAATGWYGANPDPRYSSISRFMGPSAGVNVTGMGSLTGIADAAKSLAPLHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEAGLGPPPPPSPRRVAVPVLVKDGKPCQNGAGPPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDATAGDFGGGTLGANLLYGRTW", "length": 356, "header": "tr|F1SAU4-1|F1SAU4_PIG Isoform 1 of NK2 homeobox 4 OS=Sus scrofa OX=9823 GN=NKX2-4 PE=3 SV=3 CANONICAL=F1SAU4-1" }, "isoforms": [ { "isoform_ac": "F1SAU4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAU4/entry#F1SAU4-1", "sequence": { "sequence": "MSLSPKHTTPFSVSDILSPIEETYKKFGGAMDSAPPGLGASLGAAAAAYRAPPPGPSSQAAAVAGMQPPHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFPHGAMGGYCNGGLGNMGELPAYTDGMRGGAAAAATGWYGANPDPRYSSISRFMGPSAGVNVTGMGSLTGIADAAKSLAPLHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEAGLGPPPPPSPRRVAVPVLVKDGKPCQNGAGPPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDATAGDFGGGTLGANLLYGRTW", "length": 356, "header": "tr|F1SAU4-1|F1SAU4_PIG Isoform 1 of NK2 homeobox 4 OS=Sus scrofa OX=9823 GN=NKX2-4 PE=3 SV=3 CANONICAL=F1SAU4-1" }, "locus": { "chromosome": "17", "start_pos": 29201023, "end_pos": 29199621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007782.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007782.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007573.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007573.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 297, "start_aa": "Thr", "end_pos": 297, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr297", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 309, "start_aa": "Thr", "end_pos": 309, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr309", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102158293", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158293", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZTX2-1", "protein_name": "NK2 homeobox 4", "gene_name": "Nkx2-4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSPKHTTPFSVSDILSPIEETYKKFGGVMDGAPPGLGAPLGAAAYRAPPTGPSSQAAAVAGMQPPHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFPHSAMGSYCNGGLGNMGELPAYTDGMRGGAAAAATGWYGANTDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLAPLHAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPPSPRRVAVPVLVKDGKPCQNGAGTPTPGQGGQQPQAPTPASELEELSSSPPALHGPGGGLAALDTATGDYGGGVLGANLLYGRTW", "length": 353 }, "evidence": [ { "id": "F1SAU4", "url": "https://omabrowser.org/oma/group/F1SAU4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MKX5-1", "protein_name": "NK2 homeobox 4", "gene_name": "NKX2-4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLSPKHTTPFSVSDILSPIEETYKKFGGAMDGTPPGLGAPLGAAYRAPPPGPSSQAAAAAGMQPPHAMAGHNAAAAAAAAAAAAAAATYHMPPGVSQFPHGAVGGYCNGGLGNVGELPAYTDGVRGGAAAAATGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLAPLHAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEAVLGPPPPPSPRRVAVPVLVKDGKPCQNGAATPTPQAGPQPPAPTPELEELSPSPPALHGAGAGLAGLDAAAAGDYGGSALGANLLYGRTW", "length": 347 }, "evidence": [ { "id": "F1SAU4", "url": "https://omabrowser.org/oma/group/F1SAU4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9EQM3-1", "protein_name": "Homeobox protein Nkx-2.4", "gene_name": "Nkx2-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLSPKHTTPFSVSDILSPIEETYKKFGGVMDGAPPGLGAPLGAAAYRAPPSGPSSQAAAVAAGMQPPHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFPHSAMGSYCNGGLGNMGELPAYTDGMRGGAAAAATGWYGANTDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLAPLHAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPPSPRRVAVPVLVKDGKPCQNGAGTPTPGQGGQQPQAPTPAPELEELSPSPPALHGPGGGLAALDAATGDYGGGVLGANLLYGRTW", "length": 354 }, "evidence": [ { "id": "F1SAU4", "url": "https://omabrowser.org/oma/group/F1SAU4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H2Z4-1", "protein_name": "Homeobox protein Nkx-2.4", "gene_name": "NKX2-4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLSPKHTTPFSVSDILSPIEETYKKFSGAMDGAPPGLGAPLGAAAAYRAPPPGPSSQAATVAGMQPSHAMAGHNAAAAAAAAAAAAAAAATYHMPPGVSQFPHGAMGSYCNGGLGNMGELPAYTDGMRGGAATGWYGANPDPRYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQEGGLGPPPPPPPSPRRVAVPVLVKDGKPCQNGASTPTPGQAGPQPPAPTPAPELEELSPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW", "length": 354 }, "evidence": [ { "id": "F1SAU4", "url": "https://omabrowser.org/oma/group/F1SAU4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ], "pmid": "" }, { "name": "animal organ development", "id": "GO:0048513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048513", "evidence": [ { "database": "UniProtKB", "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SAU4", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAU4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 356, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAU4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAU4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAU4" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 191, "end_pos": 251, "start_aa": "Ala", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 297, 309 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAW1-1", "uniprot_ac": "F1SAW1", "uniprot_id": "F1SAW1_PIG", "mass": { "chemical_mass": 34046.0, "monoisotopic_mass": 34046.0 }, "refseq": {}, "gene_names": [ { "name": "OR4E1", "type": "recommended", "evidence": [ { "id": "F1SAW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SAW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR4E1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1", "locus": { "chromosome": "7", "start_pos": 77518359, "end_pos": 77517460, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002105", "url": "https://www.ensembl.org/id/ENSSSCG00000002105" } ] } } ], "crossref": [ { "id": "F1SAW1", "url": "https://alphafold.ebi.ac.uk/entry/F1SAW1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15940", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15940", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAW1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LFNQTTLVMYFRLRDLSANQNVQMASFAMFLIFYVLTLIGNILIVITIIYDRRLHTPMYFFLSNLSFIDVCHSTVTVPKMLIDTWSEEKLIFFDACVTQMFFLHLFACTEIFLLTVMAYDRYVAICNPLKYMAVMNWKVCVLLAVALWTGGTIHSIALTSLTIKLPYCGPDEIDNFFCDVPQVIKLACTDTYIIEILIISNSGLISVVCFVVLVVSYAVILVSLRQQISEGRRKALSTCAAHLTVVTLFLGHCIFIYSRPSTSLPEDKVVSVFFTAVTPLLNPIIYTLRNEDMKNALNKL", "length": 300, "header": "tr|F1SAW1-1|F1SAW1_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR4E1 PE=3 SV=3 CANONICAL=F1SAW1-1" }, "isoforms": [ { "isoform_ac": "F1SAW1-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1/entry#F1SAW1-1", "sequence": { "sequence": "LFNQTTLVMYFRLRDLSANQNVQMASFAMFLIFYVLTLIGNILIVITIIYDRRLHTPMYFFLSNLSFIDVCHSTVTVPKMLIDTWSEEKLIFFDACVTQMFFLHLFACTEIFLLTVMAYDRYVAICNPLKYMAVMNWKVCVLLAVALWTGGTIHSIALTSLTIKLPYCGPDEIDNFFCDVPQVIKLACTDTYIIEILIISNSGLISVVCFVVLVVSYAVILVSLRQQISEGRRKALSTCAAHLTVVTLFLGHCIFIYSRPSTSLPEDKVVSVFFTAVTPLLNPIIYTLRNEDMKNALNKL", "length": 300, "header": "tr|F1SAW1-1|F1SAW1_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR4E1 PE=3 SV=3 CANONICAL=F1SAW1-1" }, "locus": { "chromosome": "7", "start_pos": 77518359, "end_pos": 77517460, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002355.3", "url": "https://www.ensembl.org/id/ENSSSCT00000002355.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002302.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002302.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SAW1", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAW1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 300, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAW1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAW1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW1" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 286, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAW4-1", "uniprot_ac": "F1SAW4", "uniprot_id": "F1SAW4_PIG", "mass": { "chemical_mass": 15792.0, "monoisotopic_mass": 15792.0 }, "refseq": { "ac": "XP_020944382", "name": "thyrotropin subunit beta isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944382" }, "gene_names": [ { "name": "TSHB", "type": "recommended", "evidence": [ { "id": "F1SAW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW4" } ] }, { "name": "TSH-BETA", "type": "synonym", "evidence": [ { "id": "XP_020944382", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944382" } ] }, { "name": "TSHB", "type": "synonym", "evidence": [ { "id": "XP_020944382", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944382" } ] } ], "protein_names": [ { "name": "Thyrotropin subunit beta", "type": "recommended", "evidence": [ { "id": "F1SAW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW4/entry#names_and_taxonomy" } ] }, { "name": "Thyroid-stimulating hormone subunit beta", "type": "synonym", "evidence": [ { "id": "F1SAW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW4/entry#names_and_taxonomy" } ] }, { "name": "Thyrotropin beta chain", "type": "synonym", "evidence": [ { "id": "F1SAW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW4/entry#names_and_taxonomy" } ] }, { "name": "thyrotropin subunit beta isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020944382", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944382" } ] } ], "function": [ { "annotation": "Indispensable for the control of thyroid structure and metabolism.", "evidence": [ { "database": "UniProtKB", "id": "F1SAW4", "url": "https://www.uniprot.org/uniprotkb/F1SAW4#function" }, { "database": "UniProtKB", "id": "ARBA00037283", "url": "https://www.uniprot.org/uniprotkb/ARBA00037283#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAW4", "url": "https://www.uniprot.org/uniprotkb/F1SAW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TSHB", "url": "https://www.uniprot.org/uniprotkb/F1SAW4", "locus": { "chromosome": "4", "start_pos": 105553076, "end_pos": 105554015, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006749", "url": "https://www.ensembl.org/id/ENSSSCG00000006749" } ] } } ], "crossref": [ { "id": "F1SAW4", "url": "https://alphafold.ebi.ac.uk/entry/F1SAW4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006749", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006749", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00069", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00069", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397658", "url": "https://www.ncbi.nlm.nih.gov/gene/397658", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006208", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006208", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTEYMMH", "url": "https://omabrowser.org/oma/group/PTEYMMH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11515:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11515:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00007", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00007", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-209822", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209822", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-209968", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209968", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-375281", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375281", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020944382", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944382", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAW4", "url": "https://www.uniprot.org/uniprotkb/F1SAW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAW4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAIFLMSMLFGLACGQTMSFCIPTEYMMHVERKECAYCLTINTTICAGYCMTRDFNGKLFLPKYALSQDVCTYRDFMYKTVEIPGCPHHVTPYFSYPVAISCKCGKCNTDYSDCIHEAIKTNYCTKPQKSYVLEFSI", "length": 138, "header": "tr|F1SAW4-1|F1SAW4_PIG Isoform 1 of Thyrotropin subunit beta OS=Sus scrofa OX=9823 GN=TSHB PE=3 SV=1 CANONICAL=F1SAW4-1" }, "isoforms": [ { "isoform_ac": "F1SAW4-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW4/entry#F1SAW4-1", "sequence": { "sequence": "MTAIFLMSMLFGLACGQTMSFCIPTEYMMHVERKECAYCLTINTTICAGYCMTRDFNGKLFLPKYALSQDVCTYRDFMYKTVEIPGCPHHVTPYFSYPVAISCKCGKCNTDYSDCIHEAIKTNYCTKPQKSYVLEFSI", "length": 138, "header": "tr|F1SAW4-1|F1SAW4_PIG Isoform 1 of Thyrotropin subunit beta OS=Sus scrofa OX=9823 GN=TSHB PE=3 SV=1 CANONICAL=F1SAW4-1" }, "locus": { "chromosome": "4", "start_pos": 105554010, "end_pos": 105553155, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007394.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007394.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007199.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007199.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAW4", "url": "https://www.uniprot.org/uniprotkb/F1SAW4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-209822", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209822", "resource": "Reactome", "description": "Glycoprotein hormones" }, { "id": "R-SSC-209968", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209968", "resource": "Reactome", "description": "Thyroxine biosynthesis" }, { "id": "R-SSC-375281", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375281", "resource": "Reactome", "description": "Hormone ligand-binding receptors" } ], "orthologs": [ { "uniprot_canonical_ac": "O57340-1", "protein_name": "Thyrotropin subunit beta", "gene_name": "TSHB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSPFFMMSLLFGLTFGQTASVCAPSEYTIHVEKRECAYCLAINTTICAGFCMTRDSNGKKLLLKSALSQNVCTYKEMFYQTALIPGCPHHTIPYYSYPVAISCKCGKCNTDYSDCVHEKVRTNYCTKPQKLCNM", "length": 134 }, "evidence": [ { "id": "F1SAW4", "url": "https://omabrowser.org/oma/group/F1SAW4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P01222-1", "protein_name": "Thyrotropin subunit beta", "gene_name": "TSHB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTALFLMSMLFGLTCGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAIKTNYCTKPQKSYLVGFSV", "length": 138 }, "evidence": [ { "id": "F1SAW4", "url": "https://omabrowser.org/oma/group/F1SAW4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P01223-1", "protein_name": "Thyrotropin subunit beta", "gene_name": "TSHB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTATFLMSMIFGLACGQAMSFCIPTEYMMHVERKECAYCLTINTTVCAGYCMTRDVNGKLFLPKYALSQDVCTYRDFMYKTAEIPGCPRHVTPYFSYPVAISCKCGKCNTDYSDCIHEAIKTNYCTKPQKSYMVGFSI", "length": 138 }, "evidence": [ { "id": "F1SAW4", "url": "https://omabrowser.org/oma/group/F1SAW4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P04652-1", "protein_name": "Thyrotropin subunit beta", "gene_name": "Tshb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNAVVLFSVLFALACGQVSSFCIPTEYMMYVDRRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFTYRTVEIPGCPHHVAPYFSYPVALSCKCGKCNTDYSDCTHEAVKTNYCTKPQTFYLGGFSG", "length": 138 }, "evidence": [ { "id": "F1SAW4", "url": "https://omabrowser.org/oma/group/F1SAW4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P12656-1", "protein_name": "Thyrotropin subunit beta", "gene_name": "Tshb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAAVLLSVLFALACGQAASFCIPTEYTMYVDRRECAYCLTINTTICAGYCMTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPHHVTPYFSFPVAVSCKCGKCNTDNSDCIHEAVRTNYCTKPQSFYLGGFSV", "length": 138 }, "evidence": [ { "id": "F1SAW4", "url": "https://omabrowser.org/oma/group/F1SAW4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SAW4", "url": "https://www.uniprot.org/uniprotkb/F1SAW4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SAW4", "url": "https://www.uniprot.org/uniprotkb/F1SAW4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hormone activity", "id": "GO:0005179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005179", "evidence": [ { "database": "UniProtKB", "id": "F1SAW4", "url": "https://www.uniprot.org/uniprotkb/F1SAW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAW4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 138, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAW4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAW4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW4" }, { "id": "PF00007", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00007" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycoprotein hormone subunit beta", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 125, "start_aa": "Ser", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 43, "end_pos": 45 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAW7-1", "uniprot_ac": "F1SAW7", "uniprot_id": "F1SAW7_PIG", "mass": { "chemical_mass": 59692.0, "monoisotopic_mass": 59692.0 }, "refseq": {}, "gene_names": [ { "name": "VANGL1", "type": "recommended", "evidence": [ { "id": "F1SAW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW7" } ] } ], "protein_names": [ { "name": "Vang-like protein", "type": "recommended", "evidence": [ { "id": "F1SAW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAW7", "url": "https://www.uniprot.org/uniprotkb/F1SAW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VANGL1", "url": "https://www.uniprot.org/uniprotkb/F1SAW7", "locus": { "chromosome": "4", "start_pos": 104996073, "end_pos": 105048775, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006746", "url": "https://www.ensembl.org/id/ENSSSCG00000006746" } ] } } ], "crossref": [ { "id": "F1SAW7", "url": "https://alphafold.ebi.ac.uk/entry/F1SAW7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006746", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006746", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR20886", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20886", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06638", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06638", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013026", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013106", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013404", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013406", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013407", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013407", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013420", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013420", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9035034", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696264", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAW7", "url": "https://www.uniprot.org/uniprotkb/F1SAW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDTESTYSGYSYYSSHSKKSHRQGERNRERHRSPRSKDGRGSEKSVTIQAPTGEPLLANDSTRTEDDDNWGETTTAITGTSEHSISQEDIARISKDMEDSVGLDCRRYLGLTVAAVLGLLVFLTPIAFILLPPILWRDELEPCGTICEGLFISVAFKLLILLIGTWALFFRKQRADVPRVFVFRALLLVLIFLFVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVRSTDGESRFYSLGHLSIQRAALVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAARRRDSSHNELYYEEAEHERRVKKRRARLVVAVEEAFIHIQRLQAEEQQKAPGEVMDPREAAQAIFPSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSMTPKAFLERYLSAGPTLQYDRERWLSTQWRLVSDEAVTNGLRDGLVFVLKCLDFSLVVTVKKIPFIVLSEEFIDPKSHKFVLRLQSETSV", "length": 522, "header": "tr|F1SAW7-1|F1SAW7_PIG Isoform 1 of Vang-like protein OS=Sus scrofa OX=9823 GN=VANGL1 PE=3 SV=2 CANONICAL=F1SAW7-1" }, "isoforms": [ { "isoform_ac": "F1SAW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW7/entry#F1SAW7-1", "sequence": { "sequence": "MDTESTYSGYSYYSSHSKKSHRQGERNRERHRSPRSKDGRGSEKSVTIQAPTGEPLLANDSTRTEDDDNWGETTTAITGTSEHSISQEDIARISKDMEDSVGLDCRRYLGLTVAAVLGLLVFLTPIAFILLPPILWRDELEPCGTICEGLFISVAFKLLILLIGTWALFFRKQRADVPRVFVFRALLLVLIFLFVVSYWLFYGVRILDSRDRNYQGIVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVRSTDGESRFYSLGHLSIQRAALVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAARRRDSSHNELYYEEAEHERRVKKRRARLVVAVEEAFIHIQRLQAEEQQKAPGEVMDPREAAQAIFPSMARALQKYLRTTRQQHYHSMESILQHLAFCITNSMTPKAFLERYLSAGPTLQYDRERWLSTQWRLVSDEAVTNGLRDGLVFVLKCLDFSLVVTVKKIPFIVLSEEFIDPKSHKFVLRLQSETSV", "length": 522, "header": "tr|F1SAW7-1|F1SAW7_PIG Isoform 1 of Vang-like protein OS=Sus scrofa OX=9823 GN=VANGL1 PE=3 SV=2 CANONICAL=F1SAW7-1" }, "locus": { "chromosome": "4", "start_pos": 105039461, "end_pos": 104998559, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007391.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007391.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007196.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007196.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAW7", "url": "https://www.uniprot.org/uniprotkb/F1SAW7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013026", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "resource": "Reactome", "description": "RHOB GTPase cycle" }, { "id": "R-SSC-9013106", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "resource": "Reactome", "description": "RHOC GTPase cycle" }, { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" }, { "id": "R-SSC-9013406", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013406", "resource": "Reactome", "description": "RHOQ GTPase cycle" }, { "id": "R-SSC-9013407", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013407", "resource": "Reactome", "description": "RHOH GTPase cycle" }, { "id": "R-SSC-9013408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "resource": "Reactome", "description": "RHOG GTPase cycle" }, { "id": "R-SSC-9013420", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013420", "resource": "Reactome", "description": "RHOU GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" }, { "id": "R-SSC-9013424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "resource": "Reactome", "description": "RHOV GTPase cycle" }, { "id": "R-SSC-9035034", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "resource": "Reactome", "description": "RHOF GTPase cycle" }, { "id": "R-SSC-9696264", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "resource": "Reactome", "description": "RND3 GTPase cycle" }, { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" }, { "id": "R-SSC-9696273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "resource": "Reactome", "description": "RND1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SAW7", "url": "https://www.uniprot.org/uniprotkb/F1SAW7" } ], "pmid": "" }, { "name": "lateral plasma membrane", "id": "GO:0016328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016328", "evidence": [ { "database": "UniProtKB", "id": "F1SAW7", "url": "https://www.uniprot.org/uniprotkb/F1SAW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 318, "end_pos": 320, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAW7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 522, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAW7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAW7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 318, "end_pos": 320 }, { "start_pos": 59, "end_pos": 61 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAW8-1", "uniprot_ac": "F1SAW8", "uniprot_id": "F1SAW8_PIG", "mass": { "chemical_mass": 47345.0, "monoisotopic_mass": 47345.0 }, "refseq": {}, "gene_names": [ { "name": "CASQ2", "type": "recommended", "evidence": [ { "id": "F1SAW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ] } ], "protein_names": [ { "name": "Calsequestrin", "type": "recommended", "evidence": [ { "id": "F1SAW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Calsequestrin is a high-capacity, moderate affinity, calcium-binding protein and thus acts as an internal calcium store in muscle. Calcium ions are bound by clusters of acidic residues at the protein surface, especially at the interface between subunits. Can bind around 60 Ca(2+) ions. Regulates the release of lumenal Ca(2+) via the calcium release channel RYR2; this plays an important role in triggering muscle contraction. Plays a role in excitation-contraction coupling in the heart and in regulating the rate of heart beats.", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8#function" }, { "database": "UniProtKB", "id": "ARBA00046160", "url": "https://www.uniprot.org/uniprotkb/ARBA00046160#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CASQ2", "url": "https://www.uniprot.org/uniprotkb/F1SAW8", "locus": { "chromosome": "4", "start_pos": 104984020, "end_pos": 104918221, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000061647", "url": "https://www.ensembl.org/id/ENSSSCG00000061647" } ] } } ], "crossref": [ { "id": "F1SAW8", "url": "https://alphafold.ebi.ac.uk/entry/F1SAW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006745", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006745", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03065", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03065", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03066", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03066", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03074", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03074", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001393", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001393", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10033", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10033", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10033:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10033:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01216", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01216", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2672351", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5578775", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578775", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAW8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRTHLLVLGVYLLSSCGAEEGLNFPYDGKDRVVSLTEKNFKQVLKKYDLLCLYYHEPVTSDKVSQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFNEEGSLYILKGDRTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDHIKLIGFFKSEDSEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMEEPIVIPDKPYTEEEIVEFVKEHQRPTLRRLRPEDMFETWEDNLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSIWMDIPDDDDLPTAEELEDWVEDVLSGKINTEDDDDDEEEEDDDDDDDDEDDNNSDDEDNGDSDDDDE", "length": 408, "header": "tr|F1SAW8-1|F1SAW8_PIG Isoform 1 of Calsequestrin OS=Sus scrofa OX=9823 GN=CASQ2 PE=1 SV=5 CANONICAL=F1SAW8-1" }, "isoforms": [ { "isoform_ac": "F1SAW8-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW8/entry#F1SAW8-1", "sequence": { "sequence": "MKRTHLLVLGVYLLSSCGAEEGLNFPYDGKDRVVSLTEKNFKQVLKKYDLLCLYYHEPVTSDKVSQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFNEEGSLYILKGDRTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDHIKLIGFFKSEDSEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSLKMNEVDFYEPFMEEPIVIPDKPYTEEEIVEFVKEHQRPTLRRLRPEDMFETWEDNLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVAYWEKTFKIDLFKPQIGVVNVTDADSIWMDIPDDDDLPTAEELEDWVEDVLSGKINTEDDDDDEEEEDDDDDDDDEDDNNSDDEDNGDSDDDDE", "length": 408, "header": "tr|F1SAW8-1|F1SAW8_PIG Isoform 1 of Calsequestrin OS=Sus scrofa OX=9823 GN=CASQ2 PE=1 SV=5 CANONICAL=F1SAW8-1" }, "locus": { "chromosome": "4", "start_pos": 104982849, "end_pos": 104918501, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105422.2", "url": "https://www.ensembl.org/id/ENSSSCT00000105422.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077059.2", "url": "https://www.ensembl.org/id/ENSSSCP00000077059.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2672351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "resource": "Reactome", "description": "Stimuli-sensing channels" }, { "id": "R-SSC-5578775", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578775", "resource": "Reactome", "description": "Ion homeostasis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium-dependent protein binding", "id": "GO:0048306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048306", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" }, { "name": "calcium ion sequestering activity", "id": "GO:0140314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140314", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "intracellular calcium ion homeostasis", "id": "GO:0006874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006874", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" }, { "name": "cardiac muscle contraction", "id": "GO:0060048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060048", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" }, { "name": "regulation of heart rate", "id": "GO:0002027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002027", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" }, { "name": "regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion", "id": "GO:0010881", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010881", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" }, { "name": "protein polymerization", "id": "GO:0051258", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051258", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" }, { "name": "regulation of cell communication by electrical coupling", "id": "GO:0010649", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010649", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" }, { "name": "cellular response to caffeine", "id": "GO:0071313", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071313", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" }, { "name": "sarcoplasmic reticulum lumen", "id": "GO:0033018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033018", "evidence": [ { "database": "UniProtKB", "id": "F1SAW8", "url": "https://www.uniprot.org/uniprotkb/F1SAW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 393, "end_pos": 395, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAW8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 408, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAW8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAW8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 334, "end_pos": 336 }, { "start_pos": 393, "end_pos": 395 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAW9-1", "uniprot_ac": "F1SAW9", "uniprot_id": "F1SAW9_PIG", "mass": { "chemical_mass": 14959.0, "monoisotopic_mass": 14959.0 }, "refseq": { "ac": "XP_020945652", "name": "helix-loop-helix protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945652" }, "gene_names": [ { "name": "NHLH2", "type": "recommended", "evidence": [ { "id": "F1SAW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ] }, { "name": "NHLH2", "type": "synonym", "evidence": [ { "id": "XP_020945652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945652" } ] } ], "protein_names": [ { "name": "Nescient helix-loop-helix 2", "type": "synonym", "evidence": [ { "id": "F1SAW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW9/entry#names_and_taxonomy" } ] }, { "name": "helix-loop-helix protein 2", "type": "synonym", "evidence": [ { "id": "XP_020945652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945652" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NHLH2", "url": "https://www.uniprot.org/uniprotkb/F1SAW9", "locus": { "chromosome": "4", "start_pos": 104858042, "end_pos": 104857635, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006744", "url": "https://www.ensembl.org/id/ENSSSCG00000006744" } ] } } ], "crossref": [ { "id": "F1SAW9", "url": "https://alphafold.ebi.ac.uk/entry/F1SAW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006744", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006744", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19701", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19701", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152544", "url": "https://www.ncbi.nlm.nih.gov/gene/100152544", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040238", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040238", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152544", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152544", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KALGCCA", "url": "https://omabrowser.org/oma/group/KALGCCA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAW9", "url": "https://www.orthodb.org/?gene=F1SAW9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13864", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13864", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13864:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13864:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020945652", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945652", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMLSPDQAADSDHPSSAHSDPESLGGADAKVLGSVSDLEQVEEAEGDGKGGGRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV", "length": 135, "header": "tr|F1SAW9-1|F1SAW9_PIG Isoform 1 of Nescient helix-loop-helix 2 OS=Sus scrofa OX=9823 GN=NHLH2 PE=4 SV=1 CANONICAL=F1SAW9-1" }, "isoforms": [ { "isoform_ac": "F1SAW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAW9/entry#F1SAW9-1", "sequence": { "sequence": "MMLSPDQAADSDHPSSAHSDPESLGGADAKVLGSVSDLEQVEEAEGDGKGGGRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV", "length": 135, "header": "tr|F1SAW9-1|F1SAW9_PIG Isoform 1 of Nescient helix-loop-helix 2 OS=Sus scrofa OX=9823 GN=NHLH2 PE=4 SV=1 CANONICAL=F1SAW9-1" }, "locus": { "chromosome": "4", "start_pos": 104858039, "end_pos": 104857635, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007389.2", "url": "https://www.ensembl.org/id/ENSSSCT00000007389.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007194.1", "url": "https://www.ensembl.org/id/ENSSSCP00000007194.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152544", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152544", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2TV70-1", "protein_name": "Nescient helix-loop-helix 2", "gene_name": "NHLH2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMLSPDQAADSDHPSSAPSDPESLGGADGRALSCCVSDPEPAEGGGGGGGGEGRGGGRPGLHPPPLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV", "length": 138 }, "evidence": [ { "id": "F1SAW9", "url": "https://omabrowser.org/oma/group/F1SAW9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A265-1", "protein_name": "Nescient helix loop helix 2", "gene_name": "Nhlh2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMLSPDQAADSDHPSSTHSDPESLGGVDTKVLGSVSDLEPVEEVDGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV", "length": 135 }, "evidence": [ { "id": "F1SAW9", "url": "https://omabrowser.org/oma/group/F1SAW9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BCX5-1", "protein_name": "Nescient helix-loop-helix 2", "gene_name": "NHLH2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMLSPDQAADSDHPSSAHSDPESLGGADAKVLGSVSDLEPVEEADGKGGSRATLYPHPPQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV", "length": 133 }, "evidence": [ { "id": "F1SAW9", "url": "https://omabrowser.org/oma/group/F1SAW9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q02577-1", "protein_name": "Helix-loop-helix protein 2", "gene_name": "NHLH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMLSPDQAADSDHPSSAHSDPESLGGTDTKVLGSVSDLEPVEEAEGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV", "length": 135 }, "evidence": [ { "id": "F1SAW9", "url": "https://omabrowser.org/oma/group/F1SAW9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q64221-1", "protein_name": "Helix-loop-helix protein 2", "gene_name": "Nhlh2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLSPDQAADSDHPSSTHSDPESLGGADTKVLGSVSDLEPVEEADGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVLDV", "length": 135 }, "evidence": [ { "id": "F1SAW9", "url": "https://omabrowser.org/oma/group/F1SAW9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" }, { "name": "central nervous system development", "id": "GO:0007417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007417", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" }, { "name": "transcription coactivator binding", "id": "GO:0001223", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001223", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SAW9", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAW9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 135, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAW9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAW9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAW9" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 129, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAY9-1", "uniprot_ac": "F1SAY9", "uniprot_id": "F1SAY9_PIG", "mass": { "chemical_mass": 106370.0, "monoisotopic_mass": 106370.0 }, "refseq": { "ac": "XP_020945629", "name": "WD repeat-containing protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945629" }, "gene_names": [ { "name": "WDR3", "type": "recommended", "evidence": [ { "id": "F1SAY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAY9" } ] }, { "name": "WDR3", "type": "synonym", "evidence": [ { "id": "XP_020945629", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945629" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 3", "type": "recommended", "evidence": [ { "id": "F1SAY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAY9/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 3", "type": "synonym", "evidence": [ { "id": "XP_020945629", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945629" } ] } ], "function": [ { "annotation": "Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome.", "evidence": [ { "database": "UniProtKB", "id": "F1SAY9", "url": "https://www.uniprot.org/uniprotkb/F1SAY9#function" }, { "database": "UniProtKB", "id": "ARBA00035000", "url": "https://www.uniprot.org/uniprotkb/ARBA00035000#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAY9", "url": "https://www.uniprot.org/uniprotkb/F1SAY9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR3", "url": "https://www.uniprot.org/uniprotkb/F1SAY9", "locus": { "chromosome": "4", "start_pos": 102827190, "end_pos": 102878585, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006727", "url": "https://www.ensembl.org/id/ENSSSCG00000006727" } ] } } ], "crossref": [ { "id": "F1SAY9", "url": "https://alphafold.ebi.ac.uk/entry/F1SAY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006727", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006727", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154556", "url": "https://www.ncbi.nlm.nih.gov/gene/100154556", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051570", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051570", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154556", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154556", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MNIPLTC", "url": "https://omabrowser.org/oma/group/MNIPLTC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SAY9", "url": "https://www.orthodb.org/?gene=F1SAY9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19853", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19853", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19853:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19853:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25172", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25172", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25173", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25173", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020945629", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945629", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SAY9", "url": "https://www.uniprot.org/uniprotkb/F1SAY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAY9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLTKQYLRYVASAVFGLIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKHEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAVTSLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVSSGKDTMVKWWDLDTQHCFKTVVGHRTEVWGLVLVSEEKRLITGASDSELRAWDIAYLEEIEDPEEPEPKKIKGSSPRMQDTDETEDGTLEMDEAPEDRILTCRKAGSIMREGRDRVVNLAVDRTGRILACHGTDSVLEVFRVLSIEEIQKKMDKKLKKARKKAKLNSGKEEEEDLEVSVEMTLQDEIQRVTNIKTSAKIKSFDLIHSPQGELKAVFLLQNNLVELYSLNPSVPASQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSGAAESIKIWNRSTLQCIRTMTCEYALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETVDAHDGALWSLSLSPDQRGFVTGGADKSVKFWDFELVKDENSTQKRLSVKQTRTLQLDEEVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISYDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLKFVPKSHLFFTAGKDRKIKQWDADKFEHVQTLEGHHQEIWCLAISPSGDYVVSSSHDKSLRLWERTREPLILEEEREMQREAEYEESVAKEDQPAVPGETQGDNYFTGKKTIETIKAAERIMEAIELYREETAKMREHKAICKAAGKEVPLPINPILMAYGNISPSAYVLEIFKGIKSSELEESLLVLPFSYVPDILKLFNEFIQLGSDIELLCRCLFFLLRIHFGQITSNQMLVPVIEKLKETTISKVSQVRDVIGFNMAGLDFLKRECEARSEVMFFADATSHLEEKKRKRKKREKLILTFT", "length": 943, "header": "tr|F1SAY9-1|F1SAY9_PIG Isoform 1 of WD repeat-containing protein 3 OS=Sus scrofa OX=9823 GN=WDR3 PE=3 SV=3 CANONICAL=F1SAY9-1" }, "isoforms": [ { "isoform_ac": "F1SAY9-1", "url": "https://www.uniprot.org/uniprotkb/F1SAY9/entry#F1SAY9-1", "sequence": { "sequence": "MGLTKQYLRYVASAVFGLIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKHEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAVTSLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVSSGKDTMVKWWDLDTQHCFKTVVGHRTEVWGLVLVSEEKRLITGASDSELRAWDIAYLEEIEDPEEPEPKKIKGSSPRMQDTDETEDGTLEMDEAPEDRILTCRKAGSIMREGRDRVVNLAVDRTGRILACHGTDSVLEVFRVLSIEEIQKKMDKKLKKARKKAKLNSGKEEEEDLEVSVEMTLQDEIQRVTNIKTSAKIKSFDLIHSPQGELKAVFLLQNNLVELYSLNPSVPASQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSGAAESIKIWNRSTLQCIRTMTCEYALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETVDAHDGALWSLSLSPDQRGFVTGGADKSVKFWDFELVKDENSTQKRLSVKQTRTLQLDEEVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISYDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLKFVPKSHLFFTAGKDRKIKQWDADKFEHVQTLEGHHQEIWCLAISPSGDYVVSSSHDKSLRLWERTREPLILEEEREMQREAEYEESVAKEDQPAVPGETQGDNYFTGKKTIETIKAAERIMEAIELYREETAKMREHKAICKAAGKEVPLPINPILMAYGNISPSAYVLEIFKGIKSSELEESLLVLPFSYVPDILKLFNEFIQLGSDIELLCRCLFFLLRIHFGQITSNQMLVPVIEKLKETTISKVSQVRDVIGFNMAGLDFLKRECEARSEVMFFADATSHLEEKKRKRKKREKLILTFT", "length": 943, "header": "tr|F1SAY9-1|F1SAY9_PIG Isoform 1 of WD repeat-containing protein 3 OS=Sus scrofa OX=9823 GN=WDR3 PE=3 SV=3 CANONICAL=F1SAY9-1" }, "locus": { "chromosome": "4", "start_pos": 102872897, "end_pos": 102842059, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007369.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007369.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007174.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007174.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAY9", "url": "https://www.uniprot.org/uniprotkb/F1SAY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154556", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154556", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A106-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "Wdr3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLTKQYLRYVASAVFGLIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKQEVTCLCPSPDGLHLAVGYEDGAIRVFSLLSGEGNITFNGHRAAVTSLKYDQLGGRLASGSKDTDVIIWDVINESGLYRLKGHKDAVTQALFLRERNLLVTSGKDTMVKWWDLDNQHCFKTMVGHRTEVWGLVLVSEETRLITGAADSELRAWDIAYLQEIDDPEEPEPKKIKECPGIQDTPEAEDRTLEADDEKSEDRILSCRKAGSLMREGRDRVVNLAVDKTGRILACHGTDSVLEVFCILSKAEVQKKMDKKLKKARKKARLNSANEEEDPETSVSMTLQDEILRVTKIKTSAKIKSFDLIHSPQGELKAVFLLQNNLVELYSLSTSLPNPQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSAAAESVKIWNRSTLQCIRTMPCEYALCSFFVPGDRQVVIGTKTGNMQLYDLASGNLLETIAAHDGALWSMSLSPDQRGFVTGGADKAVKFWDFELVTDKNSTQKRLSVKQTRILQLDEDVLYVCYSPDQRLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHRSLFAHDDSVMHLRFVPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSASHDKSLRLWERTREPLILEEERELQREAEYEESVAKEEQPAVPGETQGDNYFTGKKTIETVKAAERIMEAIELYREETAKMKEHRAICRAAGKEVPLPVNPILMAHGNISPSAYVLETFKGIRSSELEEALLVLPFSYVPDILTLFNGFIQTGSDVELLCRCLFFLLRIHFGQITSNQMLVPVIEKLKETTISKVRQVQDVIGFNMAGLNYLKRECEAKSEVMFFAEATSHLEEKKRKRKNRRKMILTLT", "length": 942 }, "evidence": [ { "id": "F1SAY9", "url": "https://omabrowser.org/oma/group/F1SAY9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BM03-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGLTKQYLRYVASAVFGLIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKHEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITSLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEVWGLVLVSEEKRLITGASDSELRAWDISYLQEIEDPEEPEPKKIKESSPGIQDSHEAEDGTLEMDETPEDRILTCRKAGSIMREGRDRVVNLAVDKTGRILACHGTDSVLEVFCILSKEEIQKKMDKKMKKAKKKAKLNSCNEEEEDLEVNVKMTLQDEIQRVANIKTSAKIKSFDLIHTPQGELKAVFLLQNNLVELYSLNASTPGPQPVRTNRITIGGHRSDVRTLSFSSDNIAILSAAADSIKIWNRSTLQCIRTMACEYALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSLSLSPDQRGFVTGGADKSVKFWDFELVKDENSTQKRLSVKQTRTLQLDEEVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISYDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLRFVPKSHLFFTAGKDRKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSSSHDKSLRLWERTREPLILEEEKEMQREAEYEESVAKEDQPAVPGETQGDNYFTGKKTIETVKAAERIMEAIELYREETAKLREHKAICKAAGKEVPLPINPILMAYGNISPSAYVLEIFKGIKSSELEESLLVLPFSYVPDILRLFNEFIQQGSDIELLCRCLFFLLRIHFGQITSNQMLVPVIEKLKETTISKVSQVRDVIGFNMAGLDYLKRECEAKSEVMFFADATSHLEEKKRKRKKREKLILTVT", "length": 943 }, "evidence": [ { "id": "F1SAY9", "url": "https://omabrowser.org/oma/group/F1SAY9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q12220-1", "protein_name": "U3 small nucleolar RNA-associated protein 12", "gene_name": "DIP2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVKSYQRFEQAAAFGVIASNANCVWIPASSGNSNGSGPGQLITSALEDVNIWDIKTGDLVSKLSDGLPPGASDARGAKPAECTYLEAHKDTDLLAVGYADGVIKVWDLMSKTVLLNFNGHKAAITLLQFDGTGTRLISGSKDSNIIVWDLVGEVGLYKLRSHKDSITGFWCQGEDWLISTSKDGMIKLWDLKTHQCIETHIAHTGECWGLAVKDDLLITTGTDSQVKIWKLDIENDKMGGKLTEMGIFEKQSKQRGLKIEFITNSSDKTSFFYIQNADKTIETFRIRKEEEIARGLKKREKRLKEKGLTEEEIAKSIKESYSSFILHPFQTIRSLYKIKSASWTTVSSSKLELVLTTSSNTIEYYSIPYEKRDPTSPAPLKTHTIELQGQRTDVRSIDISDDNKLLATASNGSLKIWNIKTHKCIRTFECGYALTCKFLPGGLLVILGTRNGELQLFDLASSSLLDTIEDAHDAAIWSLDLTSDGKRLVTGSADKTVKFWDFKVENSLVPGTKNKFLPVLKLHHDTTLELTDDILCVRVSPDDRYLAISLLDNTVKVFFLDSMKFYLSLYGHKLPVLSIDISFDSKMIITSSADKNIKIWGLDFGDCHKSLFAHQDSIMNVKFLPQSHNFFSCSKDAVVKYWDGEKFECIQKLYAHQSEVWALAVATDGGFVVSSSHDHSIRIWEETEDQVFLEEEKEKELEEQYEDTLLTSLEEGNGDDAFKADASGEGVEDEASGVHKQTLESLKAGERLMEALDLGIAEIEGLEAYNRDMKLWQRKKLGEAPIKPQGNAVLIAVNKTPEQYIMDTLLRIRMSQLEDALMVMPFSYVLKFLKFIDTVMQNKTLLHSHLPLICKNLFFIIKFNHKELVSQKNEELKLQINRVKTELRSALKSTEDDLGFNVQGLKFVKQQWNLRHNYEFVDEYDQQEKESNSARKRVFGTVI", "length": 943 }, "evidence": [ { "id": "F1SAY9", "url": "https://omabrowser.org/oma/group/F1SAY9/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54S79-1", "protein_name": "WD repeat-containing protein 3 homolog", "gene_name": "wdr3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVKAYLKFVQDKVFGLISTSNSILDGSGKLAITGCGERISIWDLRKQVLNQSLYEEDIKAEVTNVCLSKDGALLASGYSDGSIRIWSMSDYQLQAVFNGHRGSVTTMTFNRLGNILVSGSKDTEVIVWDIITESGLFRLRGHRDQITSVKLLERSNHLITSSKDGFIKIWDTETQHCIQTIVGHRNPIWGIDVNPDETRLCSCTSDNQIRFWRIPSNERQREDGSGIEPKFIVNTPINSAVIIPDEINEDGSKKENSNNSNNNDIDDLEIISEEEFAKYYGSITVKAESVSGVRFDPTNKILAVQSTGKFVDLFKITHYDTMKLEEISIVEEMRHRQTIKTSSKVRFFSFGNDIKHWNKFVITLAGNSLEAYEIKEKEQGGGAFEVSSTLDQAGHRSDIRSLSLSSNDQMLVSTSSESVKVWNMKSLSCIRSIACDYGLCTVFAPGNLHVIVGTKTGTIEVFELASAARVASIKAHEGSVWSLVLTPDLRGVTSGGADKLVKFWDFELIASQENSKHKVLNLSLTKTLKVESDVLALKYSADNKFLAVSLLDNTVKIFYTDTVKFHLSLYGHKLPVMCLDISDDSTLIITGSADKNIKIWGLDYGDCHKSFFAHDDSIMQVSFIPSTHHFISASKDKRIKYWDADKFEHIQTIEAHHGEVWSLAMGSVGDFFISGSHDRSIRIFNQTETPIFVESDRQREMEQTWEATLEDDTRMRTKEMLEENAAAGKQTLETIMAGEDILDAIELCVQEKFKIDEYEKLLKTTKNQDEIPLYQPNIIMLGLSPSEYLWNRINRIRPSDLEEALRVLPFSVMRTLFEYFNLWVDQSGKSVEFIFKCSFFLIQTHQNQLSVSTEFIPILQHLNTSIKNRLQKERFTLGFNRSALSFVKREIEINQQYKFFDSDLYLNKNNKNNKDKDSNNNKKDNKKDNKKDNEKSLKRNRK", "length": 942 }, "evidence": [ { "id": "F1SAY9", "url": "https://omabrowser.org/oma/group/F1SAY9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BHB4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "Wdr3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLTKQYLRYVASAVFGLIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKILILQGNKQEVTCLCPSPDGLHLAVGYEDGAIRIFSLLSGEGNITFNGHKAAVTSLKYDQLGGRLASGSKDTDVIIWDVINESGLYRLKGHKDAVTQALFLRERNLLVTSGKDTMVKWWDLDNQHCFKTMVGHRTEVWGLVLVSEEKRLITGAADSELRAWDIDYLQEIDDPEEPEPKKIKECPGIQDTPESEDSTLEADDEKSEDRILSCSKAGSIMREGRDRVVNLAVDKTGRILACHGTDSVLEVFCILSKAEVQKKMDKKLKKARKKARLNSANEEEDPETSVSMTLQDEILRVAKIKTSAKIKSFDLIHSPQGELKAVFLLQNNLVELYSLNASLPAPQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSAAADSIKIWNRSTLQCIRTMPCEYALCSFFVPGDRQVVIGTKTGNLQLYDLASGTLLETIAAHDGALWSMSLSPDQRGFVTGGADKAVKFWDFELVTDKNSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKVFYVDTLKFFLSLYGHKLPVLCMDISHDGALIATGSADRNVKIWGLDFGDCHRSLFAHDDSVMYLRFVPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSASHDKSLRLWERTREPLILEEEREMQREAEYEESVAKEDQPAVPGETQGDNYFTGKKTIETVKAAERIMEAIELHREETAKMKEHRAICKAAGKEVPLPVNPILMAHGNISPSAYVLETFKGIRSSELEEALLVLPFSYVPDVLTLFNEFIQTGLDVELLCRCLFFLLRIHFGQITSNQMLVPVIEKLKETTISKVRQVQDAIGFNMAGLDYLKRECEAKSEVMFFAEATSHLEEKKKKRKNRKRMILTLT", "length": 942 }, "evidence": [ { "id": "F1SAY9", "url": "https://omabrowser.org/oma/group/F1SAY9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LVF2-1", "protein_name": "Transducin family protein / WD-40 repeat family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVKAYQRYDAATSFGVISSVDSNIAYDSTGKYVLAPALEKVGIWHVRQGVCSKTLTPSSSRGGPSLAVTSIASSASSLVAVGYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWDVVGESGLFRLRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHCMQIVSGHHSEVWSVDTDPEERYVVTGSADQELRFYAVKEYSSNGSLVSDSNANEIKASEEHSTENKWEILKLFGEIQRQTKDRVARVRFNVSGKLLACQMAGKTIEIFRVLDEAEAKQKAKRRLRRKEKKSSKVGDENSTANGEASAKIELADAVSSPTVLDVFKLLQVIRAGRKISSFSFCPTAPKESLGTLALSLNNNSLEFYSLKSSENAKTVTIEHQGHRSDVRSVTLSEDNTLLMSTSHSEVKIWNPSTGSCLRTIDSGYGLCSLIVPQNKYGIVGTKSGVLEIIDIGSATKVEEVKAHGGTIWSITPIPNDSGFVTVSADHEVKFWEYQVKQKSGKATKKLTVSNVKSMKMNDDVLAVAISPDAKHIAVALLDSTVKVFYMDSLKFYLSLYGHKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSIFAHGDSVMGVKFVRNTHYLFSIGKDRLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWDRSEEPFFLEEEKEKRLEELFESEIDNAADDRHGPMEEIPEEGVAALAGKKTIDVLSAADSIIDALEVAEDETKRHAAYEEEKTKGKVPEYLPNAVMFGLSPSEYVLRAISNVRTNDLEQTLLALPFSDSLKFLCYMKDWSLIPEKVELVSRIATIILQTHHNQLVTTPSARPILSVLRDILYSEIKACKDTIGFNLAAMDHVKQMMDARSDAPFKDAKAKLLEIRSQQAKRMASRGDTKMEKKRKKKQKKLEEGQHGHALF", "length": 955 }, "evidence": [ { "id": "F1SAY9", "url": "https://omabrowser.org/oma/group/F1SAY9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9UNX4-1", "protein_name": "WD repeat-containing protein 3", "gene_name": "WDR3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGLTKQYLRYVASAVFGVIGSQKGNIVFVTLRGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKQEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEVWGLVLLSEEKRLITGASDSELRVWDIAYLQEIEDPEEPDPKKIKGSSPGIQDTLEAEDGAFETDEAPEDRILSCRKAGSIMREGRDRVVNLAVDKTGRILACHGTDSVLELFCILSKKEIQKKMDKKMKKARKKAKLHSSKGEEEDPEVNVEMSLQDEIQRVTNIKTSAKIKSFDLIHSPHGELKAVFLLQNNLVELYSLNPSLPTPQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSAAADSIKIWNRSTLQCIRTMTCEYALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFWDFELVKDENSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDDSVMYLQFVPKSHLFFTAGKDHKIKQWDADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSSSHDKSLRLWERTREPLILEEEREMEREAEYEESVAKEDQPAVPGETQGDSYFTGKKTIETVKAAERIMEAIELYREETAKMKEHKAICKAAGKEVPLPSNPILMAYGSISPSAYVLEIFKGIKSSELEESLLVLPFSYVPDILKLFNEFIQLGSDVELICRCLFFLLRIHFGQITSNQMLVPVIEKLRETTISKVSQVRDVIGFNMAGLDYLKRECEAKSEVMFFADATSHLEEKKRKRKKREKLILTLT", "length": 943 }, "evidence": [ { "id": "F1SAY9", "url": "https://omabrowser.org/oma/group/F1SAY9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VE98-1", "protein_name": "Small-subunit processome Utp12 domain-containing protein", "gene_name": "Dmel\\CG8064", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGLTKQYLAYRAIDSFNIITSGRANVNFAVVDKTEGRYVAAPAAENVIVWDLRMGDRKLTLRREKFEVTSLRVSPDHLHIAVGYADGMVQIFDLSSDRYYDPICTLALHKNAVSILRYDLQGMRLVSGGLDTELVVVDVVEQAGRARLSGHNAAITDAHFLQRLVDESIVVSCSKDTQIKFWNLETQFCFKTIVDNRTEVWALAFIGNLMVAGAGESGMNVYRLRKHDGAITETLESAVEGLSIDDEDTISPISVSNCGTIQRAGKGRTVNLVTDPSERVISCHGTNDLIENFYICTPDEVKKRLAKRLKKEKKVAEDEGSDEAKLSTEQSLSDEIKRLESIRAKQKIKSIDVVLGQNQELRVLVSLANNSLCLYSLEASIKTRKATDPSAKLLRSLTRLGHQSEVRSVCFSNDSLAIGSGAGESFKFWDRDAMQCLRTVPTDYILCSKFVPGDRYVLLGMKSGKLLIVDVAAADIVEEIPAHEGELWSIAILPDQKGCVTGSGDTTVKIWTFELIDAGEGAAQTKVLSLLHKNTLKLEETVLCLAVSPDMKYLAVGLLDATVKVFFLDTFKFYLSLYGHKLPVICLDISYDSNLIVTGSADRNVKVWGLNFGDCHRSIFAHDDSVMSVQFIPRTHMFFTCGKDGKVKQWDGDNFEKILTLPGHIGEAYCLSVSPNGRYLVTCGSDRTLRMFERTDETIVLKDVQEEEREQMENEQLATGEDNTVPLLPGLKMPSRKTVGSEQSAESILECLEISKQFELEAEEKPELHPLMQALQVKNPEDFLVSTLMRIRASDLEEALLLLPFSTVCEVLERLPTLLTQRPDQLELLCRVTIFLFKVHMKPISAAKNMKPLLVKLLSMLKRDVGQLRDVLGWNLHGLALLQTEVEQRDGVQLFREATQTRKKRDKKRREASKRRLQIQMV", "length": 922 }, "evidence": [ { "id": "F1SAY9", "url": "https://omabrowser.org/oma/group/F1SAY9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Pwp2p-containing subcomplex of 90S preribosome", "id": "GO:0034388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034388", "evidence": [ { "database": "UniProtKB", "id": "F1SAY9", "url": "https://www.uniprot.org/uniprotkb/F1SAY9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SAY9", "url": "https://www.uniprot.org/uniprotkb/F1SAY9" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F1SAY9", "url": "https://www.uniprot.org/uniprotkb/F1SAY9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "snoRNA binding", "id": "GO:0030515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030515", "evidence": [ { "database": "UniProtKB", "id": "F1SAY9", "url": "https://www.uniprot.org/uniprotkb/F1SAY9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "maturation of SSU-rRNA", "id": "GO:0030490", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030490", "evidence": [ { "database": "UniProtKB", "id": "F1SAY9", "url": "https://www.uniprot.org/uniprotkb/F1SAY9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 532, "end_pos": 534, "annotation": "n_glycosylation_sequon" }, { "start_pos": 801, "end_pos": 803, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAY9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 943, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAY9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAY9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAY9" }, { "id": "PF04003", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Small-subunit processome Utp12", "eco_id": "ECO_0000259", "start_pos": 805, "end_pos": 907, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 138, "end_pos": 140 }, { "start_pos": 442, "end_pos": 444 }, { "start_pos": 532, "end_pos": 534 }, { "start_pos": 801, "end_pos": 803 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SAZ2-1", "uniprot_ac": "F1SAZ2", "uniprot_id": "F1SAZ2_PIG", "mass": { "chemical_mass": 38613.0, "monoisotopic_mass": 38613.0 }, "refseq": {}, "gene_names": [ { "name": "TBX15", "type": "recommended", "evidence": [ { "id": "F1SAZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ] } ], "protein_names": [ { "name": "T-box transcription factor 15", "type": "synonym", "evidence": [ { "id": "F1SAZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBX15", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2", "locus": {} } ], "crossref": [ { "id": "F1SAZ2", "url": "https://alphafold.ebi.ac.uk/entry/F1SAZ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006725", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006725", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008967", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008967", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11267:SF98", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11267:SF98", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00907", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00907", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SAZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKNNFQRKSSLMWRFRCQGSGGGRFQLQAWELWKAHQGFEFPVGLSFGDRTELALVGAEGPQPGAPTCSSGGPTRPAHCTVGSHTSEDTQWSRLLKGSGEDREWGNPDAQSLDFVMEGRRNSEQSTGSDSEVLTERTSCSFDTHSDLGPGAAGPVPAAMSSMEEIQVELQCADLWKRFHDIGTEMIITKAGRRMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHPDSLASGDTWMRQVVSFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDFSSDLSPTKPVPVGDGVKTFNFLRPCSPRHSLSEPADHQIKN", "length": 345, "header": "tr|F1SAZ2-1|F1SAZ2_PIG Isoform 1 of T-box transcription factor 15 OS=Sus scrofa OX=9823 GN=TBX15 PE=4 SV=4 CANONICAL=F1SAZ2-1" }, "isoforms": [ { "isoform_ac": "F1SAZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2/entry#F1SAZ2-1", "sequence": { "sequence": "MKKNNFQRKSSLMWRFRCQGSGGGRFQLQAWELWKAHQGFEFPVGLSFGDRTELALVGAEGPQPGAPTCSSGGPTRPAHCTVGSHTSEDTQWSRLLKGSGEDREWGNPDAQSLDFVMEGRRNSEQSTGSDSEVLTERTSCSFDTHSDLGPGAAGPVPAAMSSMEEIQVELQCADLWKRFHDIGTEMIITKAGRRMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHPDSLASGDTWMRQVVSFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDFSSDLSPTKPVPVGDGVKTFNFLRPCSPRHSLSEPADHQIKN", "length": 345, "header": "tr|F1SAZ2-1|F1SAZ2_PIG Isoform 1 of T-box transcription factor 15 OS=Sus scrofa OX=9823 GN=TBX15 PE=4 SV=4 CANONICAL=F1SAZ2-1" }, "locus": { "chromosome": "4", "start_pos": 102002939, "end_pos": 101922452, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007366.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007366.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007171.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007171.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 75, "start_aa": "Thr", "end_pos": 75, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr75", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell fate specification", "id": "GO:0001708", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001708", "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SAZ2", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SAZ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 345, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SAZ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SAZ2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SAZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SAZ2" }, { "id": "PS50252", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50252" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "T-box", "eco_id": "ECO_0000259", "start_pos": 170, "end_pos": 325, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 75 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SB14-1", "uniprot_ac": "F1SB14", "uniprot_id": "F1SB14_PIG", "mass": { "chemical_mass": 15971.0, "monoisotopic_mass": 15971.0 }, "refseq": { "ac": "XP_003132093", "name": "mediator of RNA polymerase II transcription subunit 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132093" }, "gene_names": [ { "name": "MED9", "type": "recommended", "evidence": [ { "id": "F1SB14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB14" } ] }, { "name": "MED9", "type": "synonym", "evidence": [ { "id": "XP_003132093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132093" } ] } ], "protein_names": [ { "name": "Mediator of RNA polymerase II transcription subunit 9", "type": "recommended", "evidence": [ { "id": "F1SB14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB14/entry#names_and_taxonomy" } ] }, { "name": "Mediator complex subunit 9", "type": "synonym", "evidence": [ { "id": "F1SB14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB14/entry#names_and_taxonomy" } ] }, { "name": "mediator of RNA polymerase II transcription subunit 9", "type": "synonym", "evidence": [ { "id": "XP_003132093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132093" } ] } ], "function": [ { "annotation": "Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.", "evidence": [ { "database": "UniProtKB", "id": "F1SB14", "url": "https://www.uniprot.org/uniprotkb/F1SB14#function" }, { "database": "UniProtKB", "id": "ARBA00025687", "url": "https://www.uniprot.org/uniprotkb/ARBA00025687#function" }, { "database": "UniProtKB", "id": "RU364145", "url": "https://www.uniprot.org/uniprotkb/RU364145#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SB14", "url": "https://www.uniprot.org/uniprotkb/F1SB14" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MED9", "url": "https://www.uniprot.org/uniprotkb/F1SB14", "locus": { "chromosome": "12", "start_pos": 60906718, "end_pos": 60933944, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018053", "url": "https://www.ensembl.org/id/ENSSSCG00000018053" } ] } } ], "crossref": [ { "id": "F1SB14", "url": "https://alphafold.ebi.ac.uk/entry/F1SB14", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000018053", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018053", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512681", "url": "https://www.ncbi.nlm.nih.gov/gene/100512681", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011425", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011425", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037212", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037212", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512681", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512681", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TMPGIQL", "url": "https://omabrowser.org/oma/group/TMPGIQL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SB14", "url": "https://www.orthodb.org/?gene=F1SB14", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20844", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20844", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20844:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20844:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07544", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07544", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132093", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SB14", "url": "https://www.uniprot.org/uniprotkb/F1SB14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB14-1", "url": "https://www.uniprot.org/uniprotkb/F1SB14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASVGVPAGRQAEDALPPPTEPPMPETKPLPTPQLPTPVSAPQPQPAPRPPSPAVVKAEENCSFLPLVHNVIKCMDKDGPDVHQDLNALKTKFQEMRKAVSAMPGIHLSPEQQQQQLLSLREQVRTKSQLLQKYKSLCMFEIPKE", "length": 145, "header": "tr|F1SB14-1|F1SB14_PIG Isoform 1 of Mediator of RNA polymerase II transcription subunit 9 OS=Sus scrofa OX=9823 GN=MED9 PE=3 SV=1 CANONICAL=F1SB14-1" }, "isoforms": [ { "isoform_ac": "F1SB14-1", "url": "https://www.uniprot.org/uniprotkb/F1SB14/entry#F1SB14-1", "sequence": { "sequence": "MASVGVPAGRQAEDALPPPTEPPMPETKPLPTPQLPTPVSAPQPQPAPRPPSPAVVKAEENCSFLPLVHNVIKCMDKDGPDVHQDLNALKTKFQEMRKAVSAMPGIHLSPEQQQQQLLSLREQVRTKSQLLQKYKSLCMFEIPKE", "length": 145, "header": "tr|F1SB14-1|F1SB14_PIG Isoform 1 of Mediator of RNA polymerase II transcription subunit 9 OS=Sus scrofa OX=9823 GN=MED9 PE=3 SV=1 CANONICAL=F1SB14-1" }, "locus": { "chromosome": "12", "start_pos": 60933898, "end_pos": 60926494, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019648.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019648.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019128.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019128.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 32, "start_aa": "Thr", "end_pos": 32, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr32", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SB14", "url": "https://www.uniprot.org/uniprotkb/F1SB14" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512681", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512681", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z2U8-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 9", "gene_name": "MED9", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASGVSAARAAEEPPAPEPPAEQKPPPAPPAPAQEEFSFLPLVHDIIKCMDKDSQDVHQVLNELKNKFQEMRKLISAMPGIGVSPEQQQQQLQNLREQVRTKNELLQKYKSLCMFEIPKE", "length": 120 }, "evidence": [ { "id": "F1SB14", "url": "https://omabrowser.org/oma/group/F1SB14/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q2KHX9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 9", "gene_name": "MED9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASVGVAAGRQAEDTLPPPAEPPLPEMKPLPQPQPPPSVSAQQPQPAPKPPSPAGVKAEENCSFLPLVHSIIKCMDKDSPDIHQDLNTLKAKFQEMRKVVSTMPGIHLSPEQQQQQLQRLREQVRTKNELLQKYKSLCMFEIPKE", "length": 145 }, "evidence": [ { "id": "F1SB14", "url": "https://omabrowser.org/oma/group/F1SB14/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VCS6-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 9", "gene_name": "Med9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSGVAGGRQAEDTLQPPPELLPESKPPPPPQPLPVAALPPPAAPRPQSPAGAKEENYSFLPLVHNVIKCMDKDSPDLHQDLNALKTKFQELRKLIGTMPGIHVSPEQQQQQLHSLREQVRTKNELLQKYKSLCMFEIPKD", "length": 142 }, "evidence": [ { "id": "F1SB14", "url": "https://omabrowser.org/oma/group/F1SB14/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NWA0-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 9", "gene_name": "MED9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASAGVAAGRQAEDVLPPTSDQPLPDTKPLPPPQPPPVPAPQPQQSPAPRPQSPARAREEENYSFLPLVHNIIKCMDKDSPEVHQDLNALKSKFQEMRKLISTMPGIHLSPEQQQQQLQSLREQVRTKNELLQKYKSLCMFEIPKE", "length": 146 }, "evidence": [ { "id": "F1SB14", "url": "https://omabrowser.org/oma/group/F1SB14/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SB14", "url": "https://www.uniprot.org/uniprotkb/F1SB14" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SB14", "url": "https://www.uniprot.org/uniprotkb/F1SB14" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F1SB14", "url": "https://www.uniprot.org/uniprotkb/F1SB14" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mediator complex", "id": "GO:0016592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016592", "evidence": [ { "database": "UniProtKB", "id": "F1SB14", "url": "https://www.uniprot.org/uniprotkb/F1SB14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SB14-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 145, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SB14-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SB14" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 32 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SB20-1", "uniprot_ac": "F1SB20", "uniprot_id": "F1SB20_PIG", "mass": { "chemical_mass": 88229.0, "monoisotopic_mass": 88229.0 }, "refseq": { "ac": "XP_005654066", "name": "protein FAM83G", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654066" }, "gene_names": [ { "name": "FAM83G", "type": "recommended", "evidence": [ { "id": "F1SB20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB20" } ] }, { "name": "FAM83G", "type": "synonym", "evidence": [ { "id": "XP_005654066", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654066" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 83 member G", "type": "synonym", "evidence": [ { "id": "F1SB20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB20/entry#names_and_taxonomy" } ] }, { "name": "protein FAM83G", "type": "synonym", "evidence": [ { "id": "XP_005654066", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654066" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SB20", "url": "https://www.uniprot.org/uniprotkb/F1SB20" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM83G", "url": "https://www.uniprot.org/uniprotkb/F1SB20", "locus": { "chromosome": "12", "start_pos": 60322650, "end_pos": 60296820, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018047", "url": "https://www.ensembl.org/id/ENSSSCG00000018047" } ] } } ], "crossref": [ { "id": "F1SB20", "url": "https://alphafold.ebi.ac.uk/entry/F1SB20", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000018047", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018047", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102165932", "url": "https://www.ncbi.nlm.nih.gov/gene/102165932", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102165932", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165932", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PYWQSKA", "url": "https://omabrowser.org/oma/group/PYWQSKA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SB20", "url": "https://www.orthodb.org/?gene=F1SB20", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16181", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16181", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16181:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16181:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005654066", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005654066", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SB20", "url": "https://www.uniprot.org/uniprotkb/F1SB20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB20-1", "url": "https://www.uniprot.org/uniprotkb/F1SB20-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFSQVQCLDDSHVNWRSSESKPEFFYSEEQRLALEALVARGPDAFYEVLKRENIRDFLSELELRRILEAIEVYDPGSEDPRAGGQPRGPEDSGGGQGGDEASAADGAPTEAEPLPSLEYWPQKSDRSIPQLDLGWPDTIAYRGVTRASVYMQPPIDGQAHIKEVVRKMISQAQKVVAVVMDMFTDVDIFKDLLDAGFKRKVAVYIIVDESSVKYFLHMCARARMHPGHLKNLRVRSSGGTEFFTRSATKFKGALAQKFMFVDGDRAICGSYSFTWSAARTDRNVISVLSGQVVEVFDRQFQELYLTSHSVSLKGVPMEKEPEPEPIVLPSVVPLVPSGTMAKKLVNPKYALVKAKSADELAKTSSEKQEATRPLGARGPDPAERPAELPEPPPPIHPGLLNLERANMFEYLPTWVEPDPEPGSDILGYINIIDPNIWNPQPSQMNRIKIRDTSQAWRQSQDSSAGPANGVPAQNGLPQGDAEPRPPVPKPRTVPVADLLARDGGGLGWALESPEEEAPQHSTDLGPPRTAGPGPGPLQRQLSTDAPDGQGAAVPNGLDGEEEEEEDDDDYVTLSDQDSLSGSSGRGPGPRRPSVASSSVSDEYFEVTERSATLRRRHSEQVANGPAQPPRRQLSAPHLTRGTFAGPLGGPSWAQGREREEAGTLTRMQAPRSADKEAQGLRFHHYGVSGARDKDGFSRPLRTPGPPRYRPAADSAQSSSRKVGPAVAGPQRWQAKAGPVPRTLVGPGSPGLARNASPPADGRAAEERPSPFGIPYSKLSQAKHLKARTGAGQWASSDSKRRAQAPQDHKEP", "length": 812, "header": "tr|F1SB20-1|F1SB20_PIG Isoform 1 of Family with sequence similarity 83 member G OS=Sus scrofa OX=9823 GN=FAM83G PE=3 SV=3 CANONICAL=F1SB20-1" }, "isoforms": [ { "isoform_ac": "F1SB20-1", "url": "https://www.uniprot.org/uniprotkb/F1SB20/entry#F1SB20-1", "sequence": { "sequence": "MAFSQVQCLDDSHVNWRSSESKPEFFYSEEQRLALEALVARGPDAFYEVLKRENIRDFLSELELRRILEAIEVYDPGSEDPRAGGQPRGPEDSGGGQGGDEASAADGAPTEAEPLPSLEYWPQKSDRSIPQLDLGWPDTIAYRGVTRASVYMQPPIDGQAHIKEVVRKMISQAQKVVAVVMDMFTDVDIFKDLLDAGFKRKVAVYIIVDESSVKYFLHMCARARMHPGHLKNLRVRSSGGTEFFTRSATKFKGALAQKFMFVDGDRAICGSYSFTWSAARTDRNVISVLSGQVVEVFDRQFQELYLTSHSVSLKGVPMEKEPEPEPIVLPSVVPLVPSGTMAKKLVNPKYALVKAKSADELAKTSSEKQEATRPLGARGPDPAERPAELPEPPPPIHPGLLNLERANMFEYLPTWVEPDPEPGSDILGYINIIDPNIWNPQPSQMNRIKIRDTSQAWRQSQDSSAGPANGVPAQNGLPQGDAEPRPPVPKPRTVPVADLLARDGGGLGWALESPEEEAPQHSTDLGPPRTAGPGPGPLQRQLSTDAPDGQGAAVPNGLDGEEEEEEDDDDYVTLSDQDSLSGSSGRGPGPRRPSVASSSVSDEYFEVTERSATLRRRHSEQVANGPAQPPRRQLSAPHLTRGTFAGPLGGPSWAQGREREEAGTLTRMQAPRSADKEAQGLRFHHYGVSGARDKDGFSRPLRTPGPPRYRPAADSAQSSSRKVGPAVAGPQRWQAKAGPVPRTLVGPGSPGLARNASPPADGRAAEERPSPFGIPYSKLSQAKHLKARTGAGQWASSDSKRRAQAPQDHKEP", "length": 812, "header": "tr|F1SB20-1|F1SB20_PIG Isoform 1 of Family with sequence similarity 83 member G OS=Sus scrofa OX=9823 GN=FAM83G PE=3 SV=3 CANONICAL=F1SB20-1" }, "locus": { "chromosome": "12", "start_pos": 60322113, "end_pos": 60296909, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019642.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019642.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019122.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019122.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 146, "start_aa": "Thr", "end_pos": 146, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr146", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SB20", "url": "https://www.uniprot.org/uniprotkb/F1SB20" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102165932", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102165932", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z324-1", "protein_name": "Family with sequence similarity 83 member G", "gene_name": "FAM83G", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAFSQVQCLDDSHVNWRSSESKPEFFYSEEQRLALEALAARGPDAFYEVLKKENIRDFLSELELKKILDTLETYDPGSEYIPRHGSGTAGSEGDRNSQGDEQEVAPSLEYWPQRSDRSIPQLDLGWPETIAYRGVTRATVYMQPPIEGQAHIKEVVRKMICQAQKVIAVVMDMFTDVDIFKDLLDAGFKRKVGVYIILDETNVKHFLQMCERAQMHTGHMKNLRVRSTGGTEFFTRSATKFKGALAQKFMFVDGDRAMCGSYSFTWSAARTDRNVITVLSGQVVEAFDKQFQELYLMSKGVSLKSISMGMEPEPEPVTLPSVVPVTPANAMVKKLINPKYALVKAKSADQISKTSSENQDKTQKVENKGKGLHEGQAGDRHGEAADLSLLIHPGLLNLEKANMFDYLPTWVEPDPEPGSEVLGYINIIDPKIKNVKLSQMNRIKVCDISQASAQHRQMLKNRELEAKKISTQEPPLVSPCQRQTPQVPTEAPVVPATSPIEGNGWLTKQVGTSATQPLSHHLKPPEETPEEAKPPVPKPRTVPVGGLATKATTPCDSSSAPEGDTQPPLADHVDARQEPKESPNTASPNSCHLPAVGTQEDKGPPCAHNGLGEEEEEEEEEYITLSDQESCSSSSADHSYRRSNASSISDEYFEVRERYGPLRRTNSDVTHNGEFVPIQRKLSDPHISRGTFLSPLGSLPSLKHIRVEDMAKRRSNAVEIRCVLPRTILDGNGSYPTSATQGIEGISPESTRRSLPRASLQHSSPHCAAQSAQGTHIYRYRPRNLTGKEQGKEPSCSPPCEKPPGASKHRRDSTEPKKTIAGSQPYWQGKAFSPSKPRAVSKALSSLPESQKAAEEMRTPLGIPLSKLSQSKHLKNKVTAAPGATDSKKKPPEPTSQKEQ", "length": 900 }, "evidence": [ { "id": "F1SB20", "url": "https://omabrowser.org/oma/group/F1SB20/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9S0Z9-1", "protein_name": "Family with sequence similarity 83 member G", "gene_name": "FAM83G", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAFSQVQCLDDSHVNWRSSEAKPEFFYSEEQRLALEALAANGRDAFYEVLKRENIRDFLSELELRRILETIEVYDPGSEDPRAGTQPRGPEDGDAASAAEGTPTEAEPLPSLEYWPQKSDRSIPQLDLGWPDTIAYRGVTRASVYMQPPIDGQAHIKEVVRKMISQAQKVIAVVMDMFTDVDIFKDLLDAGFKRKVAVYIIVDESNVKYFLHMCERARMHLGHLKNLRVRSSGGTEFFTRSATKFKGALAQKFMFVDGDRAICGSYSFTWSAARTDRNVISVLSGQVVEMFDRQFQELYLMSHSVCLKDIPMEKEPEPEPIVLPPSVPLVPSGTVAKKLVNPKYALVKAKSADEIAKSSSEKQDTAKPAGVRGAVLAERPGDLPEPPLPVHPGLLNLERANMFDYLPTWVEPDPEPGSDILGYINIIDPNIWNPQPSQMNRIKIRDTSQAGTQLWRQSQDPGPALQSSAPPDGIPAENSLPQGDAQPRPPVPKPRTVPVADLLAQEGGGAGWALETPEEESPHNGMDHGLSRTVGPGHAALQRQLPVTPDDPDGEGQVVPNGLDGEEEEDDDDYVTLSDQDSLSGSSDHGPGPRRASLASSSVSDEYFEVTDRSACLRRRHSEQVANGPAQAPRRQLSAPHMTRGTCGGALGDSSWAQGQEREEAGAQRRMQAARPVDQEAQILKVVASADRPSCCPRGTVHLKLQPRRDQVRSSTARVGRPRALPVCVQTSSCSGRGQRFHHYGAPASGTREKDGFPRPLRTLGPPQFRPTADSAQSSSRKAGPAMAGPQHWQAKSGPGPRMLPGPGSPRPARNASALANSRATEEHPSPFGIPYSKLSQSKHLKARTGGSQWAPSDSKRRAHAPRDHKDP", "length": 872 }, "evidence": [ { "id": "F1SB20", "url": "https://omabrowser.org/oma/group/F1SB20/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A6ND36-1", "protein_name": "Protein FAM83G", "gene_name": "FAM83G", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAFSQVQCLDDNHVNWRSSESKPEFFYSEEQRLALEALVARGRDAFYEVLKRENIRDFLSELELKRILETIEVYDPGSEDPRGTGPSQGPEDNGVGDGEEASGADGVPIEAEPLPSLEYWPQKSDRSIPQLDLGWPDTIAYRGVTRASVYMQPPIDGQAHIKEVVRKMISQAQKVIAVVMDMFTDVDIFKDLLDAGFKRKVAVYIIVDESNVKYFLHMCERACMHLGHLKNLRVRSSGGTEFFTRSATKFKGALAQKFMFVDGDRAVCGSYSFTWSAARTDRNVISVLSGQVVEMFDRQFQELYLMSHSVSLKGIPMEKEPEPEPIVLPSVVPLVPAGTVAKKLVNPKYALVKAKSVDEIAKISSEKQEAKKPLGLKGPALAEHPGELPELLPPIHPGLLHLERANMFEYLPTWVEPDPEPGSDILGYINIIDPNIWNPQPSQMNRIKIRDTSQASAQHQLWKQSQDSRPRPEPCPPPEPSAPQDGVPAENGLPQGDPEPLPPVPKPRTVPVADVLARDSSDIGWVLELPKEEAPQNGTDHRLPRMAGPGHAPLQRQLSVTQDDPESLGVGLPNGLDGVEEEDDDDYVTLSDQDSHSGSSGRGPGPRRPSVASSVSEEYFEVREHSVPLRRRHSEQVANGPTPPPRRQLSAPHITRGTFVGPQGGSPWAQSRGREEADALKRMQAQRSTDKEAQGQQFHHHRVPASGTRDKDGFPGPPRYRSAADSVQSSTRNAGPAMAGPHHWQAKGGQVPRLLPDPGSPRLAQNARPMTDGRATEEHPSPFGIPYSKLSQSKHLKARTGGSQWASSDSKRRAQAPRDRKDP", "length": 823 }, "evidence": [ { "id": "F1SB20", "url": "https://omabrowser.org/oma/group/F1SB20/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3ZN30-1", "protein_name": "Family with sequence similarity 83, member G", "gene_name": "Fam83g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFSQVQCLDDNHVNWRSSESKPEFFYSEEQRLALEALVAQGRDAFYEVLKRENIRDFLSELELSRIVEAIEVYDPGSEDPRVSGRRSELQDNGGVDASEDTSAAGGPPATAEPLPSLEYWPQKSDRSIPQLDLGWPDTIAYRGVTRASVYMQPPIDGQPHIKEVVRKMVSQAQKVIAVVMDMFTDVDIFKDLLDAGFKRKVAVYIIVDESNVKYFLHMCERARMHLGHLKNLRVRSSGGTEFFTRSATKFKGVLAQKFMFVDGDRAVCGSYSFTWSAARTDRNVISVLSGQVVEMFDRQFQELYLMSQSVSLKDIPMEKEPEPEPIVLPSVVPLVPTGTMAKKLVNPKYALVKAKSVDEIAKTSSDKQEVTRPPGLRGPAVAERPGDLSELLPPVHPGLLNLERANMFEYLPTWVEPDPEPGSDILGYINIIDPKIWNPQPNQMNRIKIRDTAHASTQHQLWKQSQGARPCPEPCLPPAPRDSQDIVPAENGFSQGNSEPQAPVPKPRTVPVASVLAQDGSDIGWALDTPEKETPQNGIDPKLPSTTSESQVPQQQQLPVTQDDPDDLETGLPNGLYEDEDEDDDDYVTLSDQDSLSGSSGPGPGHRRPSVASSMSDEYFEVRERSVPLQRRHSEQVANGPSHPPRRQLSAPHVTRGTFGGPLSGPLWAQGRGREDIDASRIQAQRPVDRQAQGQHFHRHGSTTSRTPGPPRYRPAADGTQSSSKKASPATAGPNHWQPKGSPTPRMLPDPGSPRPTRNTRLRAELRATEEHPSPFGIPYSKLSQSKHLKARAGGSQWVPSDSKRRARDHKEP", "length": 814 }, "evidence": [ { "id": "F1SB20", "url": "https://omabrowser.org/oma/group/F1SB20/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5SWY7-1", "protein_name": "Protein FAM83G", "gene_name": "Fam83g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFSQVQCLDDNHVNWRSSESKPEFFYSEEQRLALEALVARGRDAFYEVLKRENIRDFLSELELSRIVEAIEVYDPGSEDPRVSGRRPEPQDNGGADASEETSAAGGPPATETLPSLEYWPQKSDRSIPQLDLGWPDTIAYRGVTRASVYMQPPIDGQPHIKEVVRKMVSQAQKVIAVVMDMFTDVDIFKDLLDAGFKRKVAVYIIVDESNVKYFLHMCERARMHLGHLKNLRVRSSGGTEFFTRSATKFKGVLAQKFMFVDGDRAVCGSYSFTWSAARTDRNVISVLSGQVVEMFDRQFQELYLMSQSVSLKDIPMEKEPEPEPIVLPSVVPLVPTGTMAKKLVNPKYALVKAKSVDEIAKSSSDKQEVTRPPGLRGPAVAERPGDLSELLPPVHPGLLNLERANMFEYLPTWVEPDPEPGSDILGYINIIDPNIWNPQPNQMNRIKIRDTAHASAQHQLWKQSQGARPCPAPCPPPAPRDSQGVVPAENGFPQGNPEPQAPVPKPRTVPVASVLARDGSDIGWALDTPEKETPQNGIDPRLPSTASESEVPQQQHSSMTQDDPDGLERGLPNGLDEDEDDDDDYVTLSDQDSLSGSSGPGPGHRRPSVASSMSDEYFEVRERSVPLQRRHSEQMANGPGHPPRRQLSAPHVTRGTFGGPLSSPLWAQGRSREDVDASRIQGQRPMDRQAQGQHFHRHGSTTSRTPGPPRFRPAADGTQSSSKKASPAAAGPHHWQPKGSPTPRMLPDPGSPRPTRNTRLRAELRATEEHASPFGIPYSKLSQSKHLKARAGGSQWAPSDSKRRARDHKEP", "length": 812 }, "evidence": [ { "id": "F1SB20", "url": "https://omabrowser.org/oma/group/F1SB20/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SB20", "url": "https://www.uniprot.org/uniprotkb/F1SB20" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SB20", "url": "https://www.uniprot.org/uniprotkb/F1SB20" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SB20", "url": "https://www.uniprot.org/uniprotkb/F1SB20" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "BMP signaling pathway", "id": "GO:0030509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030509", "evidence": [ { "database": "UniProtKB", "id": "F1SB20", "url": "https://www.uniprot.org/uniprotkb/F1SB20" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 755, "end_pos": 757, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SB20-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 812, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SB20-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SB20" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SB20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB20" }, { "id": "PF07894", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07894" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Scaffolding anchor of CK1", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 309, "start_aa": "Asn", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 146 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 755, "end_pos": 757 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SB25-1", "uniprot_ac": "F1SB25", "uniprot_id": "F1SB25_PIG", "mass": { "chemical_mass": 65015.0, "monoisotopic_mass": 65015.0 }, "refseq": {}, "gene_names": [ { "name": "NOX3", "type": "recommended", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ] } ], "protein_names": [ { "name": "NADPH oxidase 2", "type": "recommended", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#names_and_taxonomy" } ] }, { "name": "CGD91-phox", "type": "synonym", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#names_and_taxonomy" } ] }, { "name": "Cytochrome b(558) subunit beta", "type": "synonym", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#names_and_taxonomy" } ] }, { "name": "Cytochrome b-245 heavy chain", "type": "synonym", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#names_and_taxonomy" } ] }, { "name": "Heme-binding membrane glycoprotein gp91phox", "type": "synonym", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#names_and_taxonomy" } ] }, { "name": "Neutrophil cytochrome b 91 kDa polypeptide", "type": "synonym", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#names_and_taxonomy" } ] }, { "name": "gp91-1", "type": "synonym", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#names_and_taxonomy" } ] }, { "name": "gp91-phox", "type": "synonym", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#names_and_taxonomy" } ] }, { "name": "p22 phagocyte B-cytochrome", "type": "synonym", "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalytic subunit of the phagocyte NADPH oxidase complex that mediates the transfer of electrons from cytosolic NADPH to O2 to produce the superoxide anion (O2(-)). In the activated complex, electrons are first transferred from NADPH to flavin adenine dinucleotide (FAD) and subsequently transferred via two heme molecules to molecular oxygen, producing superoxide through an outer-sphere reaction. Activation of the NADPH oxidase complex is initiated by the assembly of cytosolic subunits of the NADPH oxidase complex with the core NADPH oxidase complex to form a complex at the plasma membrane or phagosomal membrane. This activation process is initiated by phosphorylation dependent binding of the cytosolic NCF1/p47-phox subunit to the C-terminus of CYBA/p22-phox. NADPH oxidase complex assembly is impaired through interaction with NRROS.", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25#function" }, { "database": "UniProtKB", "id": "ARBA00049971", "url": "https://www.uniprot.org/uniprotkb/ARBA00049971#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NOX3", "url": "https://www.uniprot.org/uniprotkb/F1SB25", "locus": { "chromosome": "1", "start_pos": 11501979, "end_pos": 11445956, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004068", "url": "https://www.ensembl.org/id/ENSSSCG00000004068" } ] } } ], "crossref": [ { "id": "F1SB25", "url": "https://alphafold.ebi.ac.uk/entry/F1SB25", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004068", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004068", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06186", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06186", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000778", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000778", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039261", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039261", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050369", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050369", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DENQAIH", "url": "https://omabrowser.org/oma/group/DENQAIH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11972", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11972", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11972:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11972:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01794", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01794", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5668599", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668599", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "63180", "url": "https://www.rhea-db.org/rhea/63180", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB25-1", "url": "https://www.uniprot.org/uniprotkb/F1SB25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IMGSWILNESLSIIFVLAWLGVNLYLFIDTFCWYEDEESFLYTRVILGSALAWARASAVCLNFNCMLILLPISRNFISFMRGTSTCFRGPWRRQLDKNLKFHKLVAYGIAINAAIHIGAHLCNLERYHGSQSREADGLVAALSKLGDTPNETYLNPIRTFHTNTVTELLMTISGATGLLISLVLILMMTSSTESIRQASYELFWYTHHVFIIFFIGLTIHGAGRIVRGQTPESLLLHNVTFCRDHFAEWQTAARCPVPQFSGKEPSAWKWVLGPVVLYACERIIRFWRFQQEVVITKVVSHPSRVLELQMKKRNFKMAPGQYILIQCPSVSWLEWHPFTLTSAPQEDFFSVHIRVAGDWTEALYKAFGAEGQALREPWSLPRLAVDGPFGAALTDVFHYPVTMCIAAGIGVTPFAALLKSVWYRCCESQTQLKLSKVYFYWICRDPGAFAWFADLLLSLETRMSEQGKTHFLSYHIFLTGWDENQAFHIALHWDENTDVITGLKQKTFYGRPNWNNEFRRVAYSHPSSNIGVFFCGPKALSKIIQRMCRLYSSADPRGVHFYYSKESF", "length": 568, "header": "tr|F1SB25-1|F1SB25_PIG Isoform 1 of NADPH oxidase 2 OS=Sus scrofa OX=9823 GN=NOX3 PE=4 SV=3 CANONICAL=F1SB25-1" }, "isoforms": [ { "isoform_ac": "F1SB25-1", "url": "https://www.uniprot.org/uniprotkb/F1SB25/entry#F1SB25-1", "sequence": { "sequence": "IMGSWILNESLSIIFVLAWLGVNLYLFIDTFCWYEDEESFLYTRVILGSALAWARASAVCLNFNCMLILLPISRNFISFMRGTSTCFRGPWRRQLDKNLKFHKLVAYGIAINAAIHIGAHLCNLERYHGSQSREADGLVAALSKLGDTPNETYLNPIRTFHTNTVTELLMTISGATGLLISLVLILMMTSSTESIRQASYELFWYTHHVFIIFFIGLTIHGAGRIVRGQTPESLLLHNVTFCRDHFAEWQTAARCPVPQFSGKEPSAWKWVLGPVVLYACERIIRFWRFQQEVVITKVVSHPSRVLELQMKKRNFKMAPGQYILIQCPSVSWLEWHPFTLTSAPQEDFFSVHIRVAGDWTEALYKAFGAEGQALREPWSLPRLAVDGPFGAALTDVFHYPVTMCIAAGIGVTPFAALLKSVWYRCCESQTQLKLSKVYFYWICRDPGAFAWFADLLLSLETRMSEQGKTHFLSYHIFLTGWDENQAFHIALHWDENTDVITGLKQKTFYGRPNWNNEFRRVAYSHPSSNIGVFFCGPKALSKIIQRMCRLYSSADPRGVHFYYSKESF", "length": 568, "header": "tr|F1SB25-1|F1SB25_PIG Isoform 1 of NADPH oxidase 2 OS=Sus scrofa OX=9823 GN=NOX3 PE=4 SV=3 CANONICAL=F1SB25-1" }, "locus": { "chromosome": "1", "start_pos": 11500975, "end_pos": 11446060, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004497.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004497.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004395.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004395.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5668599", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668599", "resource": "Reactome", "description": "RHO GTPases Activate NADPH Oxidases" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XN18-1", "protein_name": "NADPH oxidase 3", "gene_name": "NOX3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MACWILNEKLSVLLLLVWLGLNLYLFIDTFHWYEDEDAYVYTRIMLGSTLAWARASATCLNFNCMLILLPVSRNLISFLRGASACCGGAPRRQLDKNIAFHKVVAYGIAVNATIHIVAHLINIERYHNSQSKEAGGLQNKLSGLGKRPNESYLNPIRTYETNTTGEVLTTIAGVTGVMITVAFVLIVTSSTELIRRSCYEVFWYTHHLFVVFFIGLIIHGTGQLVRGQTPHSLLLHNITYCKEHYLEWEKATQCPLPQFSGNKPVAWKWVVSPVVLYICERIVRFWRFQQEVVITKVVTHSSGVLELHMKKHGFKMEAGQYIFLQCTSISPLEWHPFTLTSAPEEDFFSVHIRVAGDWTAALFKAFGAEEKTFKELWMLPRLVVDGPYGSATTDVFHYGVSVCIAAGIGVTPFASILKSIWYKSCNPNTVLVLQKVYFYWICRDPSTFEWFADLLFLLETKMVEKGKNDFLSYHIFLTGWDENQATHIALHYDEKMDVITGLRQKTFYGRPNWDSEFKQLAENHPSNSIGVFFCGPKNLSKILQKMCSSYSTVDPRGVQFHYNEESF", "length": 567 }, "evidence": [ { "id": "F1SB25", "url": "https://omabrowser.org/oma/group/F1SB25/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BFF3-1", "protein_name": "NADPH oxidase 2", "gene_name": "NOX3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMGCWILNESLSIILVLSWLGVNLYLFINTFYWYEEEESFLYTRVILGSTLAWARASAVCLNFNCMLILLPVSRNLISFMRGTSACFRGPWRRQLDKNLKFHKLVAYGIVINATIHVGAHLFNLEHYYWSQSPEAEGLVAALSKLGDTPNETYLNPIRTFHTNTITELLTTIAGITGLLISLALILIMTSSTEFIRQVSYELFWYTHHVFIIFFIGLAIHGAGRIVRGQTPESLLLHNITLCRDHPEEWQVRCPVPQFSGKEPSAWKWVLGPMVLYACERIIRFWRFQQEVIITKVVSHPSGVLELCMKKRDFKMAPGQYVLIQCPSISTLEWHPFTLTSAPQEDFFSVHIRAAGDWTEALCKAFGVEGQPLKEPWSLPRLAVDGPFGAALTDVFHYRVSMCIAAGIGVTPFAALLKSIWYQCCEAQTQCKLNKVYFYWICRDPGAFEWFADLLLALETKMSEQGKAHFLSYHIFLTGWDENQAFHIALHWDENADVITGLRQKTYYGRPNWNHEFQQVAFSHPSSNIGVFFCGPKALSKILQKMCRVYSSADPRGVHFYYNRESF", "length": 566 }, "evidence": [ { "id": "F1SB25", "url": "https://omabrowser.org/oma/group/F1SB25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q672J9-1", "protein_name": "NADPH oxidase 3", "gene_name": "Nox3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPVCWILNESGSFVVALLWLAVNAYLFIDTFFWYTEEEAFFYTRVILGSALAWARASAVCLNFNCMLILLPVSRNFISLVRGTSVCCRGPWRRQLDKNLNFHKLVAYGIAVNSVIHIVAHLFNLERYHLGQAKDAEGLLAALSKLGDAPNESYLNPVRTFDMGTTTELLMTVSGITGLGISLALVFIMTSSTEFIRRSSYELFWYTHHIFVFFFISLAIHGGGRIIRGQTPESLRLHNVTYCRDHYAEWQAAALCPVPQFSGKEPSAWKWALGPVVLYACERIIRFWRSHQEVVITKVVSHPSAVLELHMKKRDFKMAPGQYIFIQCPSVSPLEWHPFTLTSAPQEDFFSVHIRASGDWTEALLKAFRVEGQAPSELCSMPRLAVDGPFGGSLADVFHYPVSVCIATGIGVTPFASLLKSVWYKCCESQSLPELSKVYFYWICRDAGAFEWFADLLLSLETRMSEQGKAHLLSYHIYLTGWDENQAIHIALHWDESLDVITGLKQKAFYGRPNWNDEFKQIAYNHPSSSIGVFFCGSKAMSKTLQKMCRLYSSVDPRGVHFYYNKENF", "length": 568 }, "evidence": [ { "id": "F1SB25", "url": "https://omabrowser.org/oma/group/F1SB25/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q672K1-1", "protein_name": "NADPH oxidase 3", "gene_name": "Nox3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTCWILNESVSFVVALLWLAINIYLFIDTFCWYAEEESFFYTRVILGSALAWARASAVCLNFNCMLILLPVSRNFVSLVRGTSVCCRGPWRRQLDKNLKFHKLVAYGIAVNSVIHIVAHLFNLERYHLGQAKDAEGLLAALSKLGNAPNESYLNPVRTLYTGTTTQLLMTVSGITGLVISLALILIMTSSTEFIRQSSYELFWYTHHIFIFLFISLAIHGGGRIIRGQTPESLRLHNVTFCRDHFDEWQEAASCPVPQFSGKEPSAWKWTLGPVVLYACEIIIRFWRSHQEVVITKVVSHPSAVLELHMKKRDFKMAPGQYIFIQCPSISPLEWHPFTLTSAPQEDFFSVHIRASGDWTEALLKAFGAEGQAPSELCSMPRLAVDGPFGGSLADVFHYPVSVCIATGIGVTPFASLLKSVWYKCCESQSLPGLSKVYFYWICRDAAAFEWFADLLLSLETQMSEQGKAHLLSYHIYLTGWDEYQAIHIALHWDESLDVITGLKQKTFYGRPNWNEEFKQIAYNHPSSSIGVFFCGPKAMSKTLQKMCRLYSSSDPRGVHFYYNKENF", "length": 568 }, "evidence": [ { "id": "F1SB25", "url": "https://omabrowser.org/oma/group/F1SB25/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86GL4-1", "protein_name": "Superoxide-generating NADPH oxidase heavy chain subunit B", "gene_name": "noxB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNEKKELQQELELQEFQTPKNQQLEKLQEPNGEISSTGNETSESGISSPPISQNDNSNNENESLNITPNKPFVSMQEELQNLDIENIPIPPTIQTPKIYKNTNNLIHSKNNLSLPISLSQENIVKLDKVDIESNDQVNSNTDNNNNTNNNNNTNNNKNEKIGLRSKIFKSKIFIKIRGWWWHRGISTYIMLFYIALNIGVGVHMFYNMYHSDIFKFLGLSFCFSRTAARLINLNSAVILLPVLRNFLSWLRGTIVNNYIPIDKHLNFHKLCAFMLFCCTIIHCVGHYISFKKINDDVLKIDDGKSVAGDYLNININNFPDEKYLFFKSVPGITGHIMLLILILIVSSSMWRIRRPMFEIFWYVHHLFIPFYILLCFHGYSKILKKDPQSWMWIIAPFILYSIERLIRIARSKKRVILEKAIMHPSKVLELRMKRDNDNFNFKPGQYLYLNCPSIAYHEWHPFTITSAPDDPFISVHINIVGNWTRKLFKLLNPDNKLGLIQEDLKSTQNRGKRRILKIDGPFGAPAENFFKYRNLVLIGAGIGVTPFSSILRHLKNQNDKQTNADENHLKINKIYFIWISRQKNSFQWFTDILAELENDERIDSILEIHIFLTGALELDDYAKIKNAQKCHITNLHSKTLFGRPNFRSIFNQLTQLHQREKIGVFYCGNKALGKNIIKNCNKFNGKNNCHLIFHKENF", "length": 698 }, "evidence": [ { "id": "F1SB25", "url": "https://omabrowser.org/oma/group/F1SB25/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9HBY0-1", "protein_name": "NADPH oxidase 3", "gene_name": "NOX3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMGCWILNEGLSTILVLSWLGINFYLFIDTFYWYEEEESFHYTRVILGSTLAWARASALCLNFNCMLILIPVSRNLISFIRGTSICCRGPWRRQLDKNLRFHKLVAYGIAVNATIHIVAHFFNLERYHWSQSEEAQGLLAALSKLGNTPNESYLNPVRTFPTNTTTELLRTIAGVTGLVISLALVLIMTSSTEFIRQASYELFWYTHHVFIVFFLSLAIHGTGRIVRGQTQDSLSLHNITFCRDRYAEWQTVAQCPVPQFSGKEPSAWKWILGPVVLYACERIIRFWRFQQEVVITKVVSHPSGVLELHMKKRGFKMAPGQYILVQCPAISSLEWHPFTLTSAPQEDFFSVHIRAAGDWTAALLEAFGAEGQALQEPWSLPRLAVDGPFGTALTDVFHYPVCVCVAAGIGVTPFAALLKSIWYKCSEAQTPLKLSKVYFYWICRDARAFEWFADLLLSLETRMSEQGKTHFLSYHIFLTGWDENQALHIALHWDENTDVITGLKQKTFYGRPNWNNEFKQIAYNHPSSSIGVFFCGPKALSRTLQKMCHLYSSADPRGVHFYYNKESF", "length": 568 }, "evidence": [ { "id": "F1SB25", "url": "https://omabrowser.org/oma/group/F1SB25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "NADPH oxidase complex", "id": "GO:0043020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043020", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" }, { "name": "monoatomic ion channel complex", "id": "GO:0034702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034702", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "defense response", "id": "GO:0006952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006952", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" }, { "name": "monoatomic ion transmembrane transport", "id": "GO:0034220", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034220", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" }, { "name": "superoxide anion generation", "id": "GO:0042554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042554", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" }, { "name": "NAD(P)H oxidase H2O2-forming activity", "id": "GO:0016174", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016174", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" }, { "name": "superoxide-generating NAD(P)H oxidase activity", "id": "GO:0016175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016175", "evidence": [ { "database": "UniProtKB", "id": "F1SB25", "url": "https://www.uniprot.org/uniprotkb/F1SB25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" }, { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "63180", "name": "", "equation": "NADPH + 2 O2 = 2 superoxide + NADP(+) + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "63180", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/63180" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SB25-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 568, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SB25-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SB25" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SB25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB25" }, { "id": "PS51384", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51384" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAD-binding FR-type", "eco_id": "ECO_0000259", "start_pos": 285, "end_pos": 395, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 150, "end_pos": 152 }, { "start_pos": 238, "end_pos": 240 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SB38-1", "uniprot_ac": "F1SB38", "uniprot_id": "F1SB38_PIG", "mass": { "chemical_mass": 73543.0, "monoisotopic_mass": 73543.0 }, "refseq": {}, "gene_names": [ { "name": "PUS7", "type": "recommended", "evidence": [ { "id": "F1SB38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ] } ], "protein_names": [ { "name": "Pseudouridylate synthase 7 homolog", "type": "recommended", "evidence": [ { "id": "F1SB38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB38/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Pseudouridylate synthase that catalyzes pseudouridylation of RNAs. Acts as a regulator of protein synthesis in embryonic stem cells by mediating pseudouridylation of RNA fragments derived from tRNAs (tRFs): pseudouridylated tRFs inhibit translation by targeting the translation initiation complex. Also catalyzes pseudouridylation of mRNAs: mediates pseudouridylation of mRNAs with the consensus sequence 5'-UGUAG-3'. Acts as a regulator of pre-mRNA splicing by mediating pseudouridylation of pre-mRNAs at locations associated with alternatively spliced regions. Pseudouridylation of pre-mRNAs near splice sites directly regulates mRNA splicing and mRNA 3'-end processing. In addition to mRNAs and tRNAs, binds other types of RNAs, such as snRNAs, Y RNAs and vault RNAs, suggesting that it can catalyze pseudouridylation of many RNA types.", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38#function" }, { "database": "UniProtKB", "id": "ARBA00053535", "url": "https://www.uniprot.org/uniprotkb/ARBA00053535#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PUS7", "url": "https://www.uniprot.org/uniprotkb/F1SB38", "locus": { "chromosome": "9", "start_pos": 105325763, "end_pos": 105388928, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015428", "url": "https://www.ensembl.org/id/ENSSSCG00000015428" } ] } } ], "crossref": [ { "id": "F1SB38", "url": "https://alphafold.ebi.ac.uk/entry/F1SB38", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015428", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015428", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02576", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02576", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13326", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13326", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13326:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13326:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01142", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01142", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "42540", "url": "https://www.rhea-db.org/rhea/42540", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "54572", "url": "https://www.rhea-db.org/rhea/54572", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "56644", "url": "https://www.rhea-db.org/rhea/56644", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB38-1", "url": "https://www.uniprot.org/uniprotkb/F1SB38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMTEMTGVSLKRGSIAVEDNDIAAPVEEAKRQKVSECCLTKGQDGLENNSLPSSEKMPGSPEVAGAGEDKKNSDVQTEGEEEEEAESFADMMKHGLTELDVGITKFVSSHQGFSGILKERYSDFIVHEIGKDGRISHLNDLSVPVDKEDPSKDVLTLLTDEEKQRLEELQLFKNKETSVAIEVIEDTKEKRTIIHQGIKSLFPGLETKTEDREGKKYIVAYHAAGKKALANPRKHSWPKSRGSYCHFVLYKENKDTMDAINLLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAHLNKCLMNFKLGNFSYQKKPLKLGELQGNHFTVVLRNITGTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNMVSKRIEEYGLKPVPGDLVLKGATATYIEEEDVNNYSIHDVVMPLPGFDIIYPKHKISEAYREMLTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKPPPVFASEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKKQTQLNTTWLR", "length": 649, "header": "tr|F1SB38-1|F1SB38_PIG Isoform 1 of Pseudouridylate synthase 7 homolog OS=Sus scrofa OX=9823 GN=PUS7 PE=3 SV=5 CANONICAL=F1SB38-1" }, "isoforms": [ { "isoform_ac": "F1SB38-1", "url": "https://www.uniprot.org/uniprotkb/F1SB38/entry#F1SB38-1", "sequence": { "sequence": "MEMTEMTGVSLKRGSIAVEDNDIAAPVEEAKRQKVSECCLTKGQDGLENNSLPSSEKMPGSPEVAGAGEDKKNSDVQTEGEEEEEAESFADMMKHGLTELDVGITKFVSSHQGFSGILKERYSDFIVHEIGKDGRISHLNDLSVPVDKEDPSKDVLTLLTDEEKQRLEELQLFKNKETSVAIEVIEDTKEKRTIIHQGIKSLFPGLETKTEDREGKKYIVAYHAAGKKALANPRKHSWPKSRGSYCHFVLYKENKDTMDAINLLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAHLNKCLMNFKLGNFSYQKKPLKLGELQGNHFTVVLRNITGTDDQVQQAMNSLKEIGFINYYGMQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPAAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNMVSKRIEEYGLKPVPGDLVLKGATATYIEEEDVNNYSIHDVVMPLPGFDIIYPKHKISEAYREMLTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKPPPVFASEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKKQTQLNTTWLR", "length": 649, "header": "tr|F1SB38-1|F1SB38_PIG Isoform 1 of Pseudouridylate synthase 7 homolog OS=Sus scrofa OX=9823 GN=PUS7 PE=3 SV=5 CANONICAL=F1SB38-1" }, "locus": { "chromosome": "9", "start_pos": 105378083, "end_pos": 105327003, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016808.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016808.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016360.5", "url": "https://www.ensembl.org/id/ENSSSCP00000016360.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "tRNA pseudouridine synthesis", "id": "GO:0031119", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031119", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "regulation of hematopoietic stem cell differentiation", "id": "GO:1902036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902036", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "negative regulation of translation", "id": "GO:0017148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017148", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "pseudouridine synthesis", "id": "GO:0001522", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001522", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "mRNA pseudouridine synthesis", "id": "GO:1990481", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990481", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "regulation of mesoderm development", "id": "GO:2000380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000380", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "pseudouridine synthase activity", "id": "GO:0009982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009982", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" }, { "name": "tRNA pseudouridine(13) synthase activity", "id": "GO:0160150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160150", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SB38", "url": "https://www.uniprot.org/uniprotkb/F1SB38" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" }, { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" }, { "start_pos": 571, "end_pos": 573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 644, "end_pos": 646, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "42540", "name": "", "equation": "uridine(13) in tRNA = pseudouridine(13) in tRNA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "42540", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/42540" } ] }, { "id": "54572", "name": "", "equation": "a uridine in tRNA = a pseudouridine in tRNA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54572", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54572" } ] }, { "id": "56644", "name": "", "equation": "a uridine in mRNA = a pseudouridine in mRNA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "56644", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/56644" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SB38-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 649, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SB38-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SB38" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SB38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB38" }, { "id": "PS50984", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50984" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRUD", "eco_id": "ECO_0000259", "start_pos": 358, "end_pos": 568, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 315, "end_pos": 317 }, { "start_pos": 339, "end_pos": 341 }, { "start_pos": 49, "end_pos": 51 }, { "start_pos": 509, "end_pos": 511 }, { "start_pos": 571, "end_pos": 573 }, { "start_pos": 644, "end_pos": 646 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SB65-1", "uniprot_ac": "F1SB65", "uniprot_id": "F1SB65_PIG", "mass": { "chemical_mass": 61488.0, "monoisotopic_mass": 61488.0 }, "refseq": { "ac": "XP_001926376", "name": "poly(A)-specific ribonuclease PNLDC1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926376" }, "gene_names": [ { "name": "PNLDC1", "type": "recommended", "evidence": [ { "id": "F1SB65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ] }, { "name": "PNLDC1", "type": "synonym", "evidence": [ { "id": "XP_001926376", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926376" } ] } ], "protein_names": [ { "name": "Poly(A)-specific ribonuclease PNLDC1", "type": "recommended", "evidence": [ { "id": "F1SB65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB65/entry#names_and_taxonomy" } ] }, { "name": "3.1.13.4", "type": "synonym", "evidence": [ { "id": "F1SB65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB65/entry#names_and_taxonomy" } ] }, { "name": "PARN-like domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "F1SB65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB65/entry#names_and_taxonomy" } ] }, { "name": "Poly(A)-specific ribonuclease domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "F1SB65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SB65/entry#names_and_taxonomy" } ] }, { "name": "poly(A)-specific ribonuclease PNLDC1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_001926376", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926376" } ] } ], "function": [ { "annotation": "3'-exoribonuclease that has a preference for poly(A) tails of mRNAs, thereby efficiently degrading poly(A) tails. Exonucleolytic degradation of the poly(A) tail is often the first step in the decay of eukaryotic mRNAs and is also used to silence certain maternal mRNAs translationally during oocyte maturation and early embryonic development. May act as a regulator of multipotency in embryonic stem cells. Is a critical factor for proper spermatogenesis, involved in pre-piRNAs processing to generate mature piRNAs.", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65#function" }, { "database": "UniProtKB", "id": "ARBA00055428", "url": "https://www.uniprot.org/uniprotkb/ARBA00055428#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PNLDC1", "url": "https://www.uniprot.org/uniprotkb/F1SB65", "locus": { "chromosome": "1", "start_pos": 7559745, "end_pos": 7579197, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004046", "url": "https://www.ensembl.org/id/ENSSSCG00000004046" } ] } } ], "crossref": [ { "id": "F1SB65", "url": "https://alphafold.ebi.ac.uk/entry/F1SB65", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004046", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004046", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152694", "url": "https://www.ncbi.nlm.nih.gov/gene/100152694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152694", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152694", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SB65", "url": "https://www.orthodb.org/?gene=F1SB65", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15092", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15092", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15092:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15092:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001926376", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926376", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SB65-1", "url": "https://www.uniprot.org/uniprotkb/F1SB65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDIGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIRHNILTGNWRVRSSLDKDQIKVVIDEVTRWLDLAEEGDWMTLPGITGFQAFEVQLVLRKALPNIWTVLRDQGVIVKKVSKQHRWYLENTSCDRESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEDFKLNIHNLFPILIDTKNVTKDVWKELSFPRVSNLSEVYEVLNSDLNPTKDSGPVIIHASKCEKYVETKYPHEAAYDAFLCGSVLLKVAHLLLWRVHGAVPIPEPSFPLYLDVLAPYVNQVNLIRAGVPKINFSGPDHPSIRPPTLILRVRRWPEVSEQQIYREFQNLCKFDVRRLTRSQFLLLTNKFKDARSILKEYRCHPTLQVSLYRYWRHSPDVTCLLEVCGVVIAWALMAFLLGRPRP", "length": 531, "header": "tr|F1SB65-1|F1SB65_PIG Isoform 1 of Poly(A)-specific ribonuclease PNLDC1 OS=Sus scrofa OX=9823 GN=PNLDC1 PE=3 SV=3 CANONICAL=F1SB65-1" }, "isoforms": [ { "isoform_ac": "F1SB65-1", "url": "https://www.uniprot.org/uniprotkb/F1SB65/entry#F1SB65-1", "sequence": { "sequence": "MDIGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQSVQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGFDYNKFLKNGIPYMNEEQEKKIRHNILTGNWRVRSSLDKDQIKVVIDEVTRWLDLAEEGDWMTLPGITGFQAFEVQLVLRKALPNIWTVLRDQGVIVKKVSKQHRWYLENTSCDRESCWKEKILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYEDFKLNIHNLFPILIDTKNVTKDVWKELSFPRVSNLSEVYEVLNSDLNPTKDSGPVIIHASKCEKYVETKYPHEAAYDAFLCGSVLLKVAHLLLWRVHGAVPIPEPSFPLYLDVLAPYVNQVNLIRAGVPKINFSGPDHPSIRPPTLILRVRRWPEVSEQQIYREFQNLCKFDVRRLTRSQFLLLTNKFKDARSILKEYRCHPTLQVSLYRYWRHSPDVTCLLEVCGVVIAWALMAFLLGRPRP", "length": 531, "header": "tr|F1SB65-1|F1SB65_PIG Isoform 1 of Poly(A)-specific ribonuclease PNLDC1 OS=Sus scrofa OX=9823 GN=PNLDC1 PE=3 SV=3 CANONICAL=F1SB65-1" }, "locus": { "chromosome": "1", "start_pos": 7579140, "end_pos": 7560419, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004474.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004474.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004372.4", "url": "https://www.ensembl.org/id/ENSSSCP00000004372.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152694", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152694", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" }, { "name": "3'-5'-RNA exonuclease activity", "id": "GO:0000175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000175", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" }, { "name": "poly(A)-specific ribonuclease activity", "id": "GO:0004535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004535", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" }, { "name": "piRNA processing", "id": "GO:0034587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034587", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" }, { "name": "nuclear-transcribed mRNA poly(A) tail shortening", "id": "GO:0000289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000289", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" }, { "name": "priRNA 3'-end processing", "id": "GO:1990431", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990431", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" }, { "name": "siRNA 3'-end processing", "id": "GO:1990432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990432", "evidence": [ { "database": "UniProtKB", "id": "F1SB65", "url": "https://www.uniprot.org/uniprotkb/F1SB65" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 322, "end_pos": 324, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SB65-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 531, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SB65-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SB65" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 229, "end_pos": 231 }, { "start_pos": 306, "end_pos": 308 }, { "start_pos": 322, "end_pos": 324 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 420, "end_pos": 422 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBA1-1", "uniprot_ac": "F1SBA1", "uniprot_id": "F1SBA1_PIG", "mass": { "chemical_mass": 52180.0, "monoisotopic_mass": 52180.0 }, "refseq": { "ac": "XP_020951858", "name": "carbohydrate sulfotransferase 9 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951858" }, "gene_names": [ { "name": "CHST9", "type": "recommended", "evidence": [ { "id": "F1SBA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBA1" } ] }, { "name": "CHST9", "type": "synonym", "evidence": [ { "id": "XP_020951858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951858" } ] } ], "protein_names": [ { "name": "Carbohydrate sulfotransferase", "type": "recommended", "evidence": [ { "id": "F1SBA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBA1/entry#names_and_taxonomy" } ] }, { "name": "2.8.2.-", "type": "synonym", "evidence": [ { "id": "F1SBA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBA1/entry#names_and_taxonomy" } ] }, { "name": "carbohydrate sulfotransferase 9 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951858", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951858" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBA1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHST9", "url": "https://www.uniprot.org/uniprotkb/F1SBA1", "locus": { "chromosome": "6", "start_pos": 111465126, "end_pos": 111719888, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003721", "url": "https://www.ensembl.org/id/ENSSSCG00000003721" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003721", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003721", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515146", "url": "https://www.ncbi.nlm.nih.gov/gene/100515146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515146", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515146", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SBA1", "url": "https://www.orthodb.org/?gene=F1SBA1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12137", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12137", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12137:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12137:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03567", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03567", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020951858", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951858", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBA1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBA1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVLWKTKPGGLQKRGEVQPSDVVMNPKQVFFSVLIFGAAGLLLFMYLQVWIEEQHTGWGPINYLQPIPRIMTRETIQERITNQNLKSHVPKDPKDKKENLLNSQRPPRVLTDTSHSQGEAQALGRTTGSPRIQLIEKHLETKTFFRKFSEMNWPMDPRPLNKSLVKDSKWKGIDATQEKRRSFLQEFCKKYGGVSRPQSHLFHMVSRIYVEDKHKILYCEVPKAGCSNWKRILMVLNGLAPSAHNISHDAVHYGKHLKKLDSFDLKGIYTRLNTYTKAVFVRDPMERLVSAFRDKFEHPNSYYHPVFGKAIIKKYRANACEEALNNGSGVKFKEFIHYLLDSHRPVGMDIHWEKVNKLCYPCLINYDFVGKFETLEDDANYFLQLIGAPKELKFPNFKDRHSSDKRTNAQVVRQYLKDLTRTERQLTYDFYYLDYLMFNYTTPFL", "length": 446, "header": "tr|F1SBA1-1|F1SBA1_PIG Isoform 1 of Carbohydrate sulfotransferase OS=Sus scrofa OX=9823 GN=CHST9 PE=3 SV=3 CANONICAL=F1SBA1-1" }, "isoforms": [ { "isoform_ac": "F1SBA1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1/entry#F1SBA1-1", "sequence": { "sequence": "MAVLWKTKPGGLQKRGEVQPSDVVMNPKQVFFSVLIFGAAGLLLFMYLQVWIEEQHTGWGPINYLQPIPRIMTRETIQERITNQNLKSHVPKDPKDKKENLLNSQRPPRVLTDTSHSQGEAQALGRTTGSPRIQLIEKHLETKTFFRKFSEMNWPMDPRPLNKSLVKDSKWKGIDATQEKRRSFLQEFCKKYGGVSRPQSHLFHMVSRIYVEDKHKILYCEVPKAGCSNWKRILMVLNGLAPSAHNISHDAVHYGKHLKKLDSFDLKGIYTRLNTYTKAVFVRDPMERLVSAFRDKFEHPNSYYHPVFGKAIIKKYRANACEEALNNGSGVKFKEFIHYLLDSHRPVGMDIHWEKVNKLCYPCLINYDFVGKFETLEDDANYFLQLIGAPKELKFPNFKDRHSSDKRTNAQVVRQYLKDLTRTERQLTYDFYYLDYLMFNYTTPFL", "length": 446, "header": "tr|F1SBA1-1|F1SBA1_PIG Isoform 1 of Carbohydrate sulfotransferase OS=Sus scrofa OX=9823 GN=CHST9 PE=3 SV=3 CANONICAL=F1SBA1-1" }, "locus": { "chromosome": "6", "start_pos": 111684187, "end_pos": 111466483, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004121.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004121.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004029.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004029.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBA1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515146", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515146", "resource": "KEGG Pathway" }, { "id": "R-SSC-2022870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022870", "resource": "Reactome", "description": "CS-GAG biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "sulfotransferase activity", "id": "GO:0008146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008146", "evidence": [ { "database": "UniProtKB", "id": "F1SBA1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1" } ], "pmid": "" }, { "name": "dermatan 4-sulfotransferase activity", "id": "GO:0001537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001537", "evidence": [ { "database": "UniProtKB", "id": "F1SBA1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "carbohydrate biosynthetic process", "id": "GO:0016051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016051", "evidence": [ { "database": "UniProtKB", "id": "F1SBA1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1" } ], "pmid": "" }, { "name": "sulfur compound metabolic process", "id": "GO:0006790", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006790", "evidence": [ { "database": "UniProtKB", "id": "F1SBA1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1" } ], "pmid": "" }, { "name": "proteoglycan biosynthetic process", "id": "GO:0030166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030166", "evidence": [ { "database": "UniProtKB", "id": "F1SBA1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SBA1", "url": "https://www.uniprot.org/uniprotkb/F1SBA1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 440, "end_pos": 442, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1971483", "name": "CHST11,12,13,9 transfer sulfate to (4-)GalNAc", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1971483", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1971483" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00017IP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00230CO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00582VL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G00636QL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00740UU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G02057LB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G04846SY", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G04893EC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G05151WT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G05377HJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G05611SB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G06216UH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G07123BN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G08009LH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G08070PH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G08627LE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G10235QZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12243WN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13849RQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14281OH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14695KF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G15688CE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G15719NX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G16058FI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G16230QU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G16316CS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G16402DK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G16943PO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17107VB", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G17344FG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G18640IS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G18806VU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19106CR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21495CG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21519PO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21695CC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22406UE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23408TM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23614TN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23647WB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G24413UY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24812WY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25423CA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25781GZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27262AE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G28936HJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G29026MS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G29676WX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30129GW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30229OR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G30553TG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30553WH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30615JE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31390DC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32659RY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G33612TW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34259YJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34330HT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34394KR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G35194OT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35698OP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37689LY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37817YS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38867AF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39323NG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39437XQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40786FB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41182NJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41191PN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42205PU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42525DE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42841BX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43265RC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G43767FS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G45681QN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G46170RN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G46604MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47206MY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47206OM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G47407FC", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G48185FI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49024AU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49071WQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49168NM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G49743VF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G49928PT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G50531NJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52676LZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53985AY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54499PQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G56271TF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58807XI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59877NF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G61431VC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G61800QD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G65117HG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G65645WO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G68045UG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G68059HB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G68873AT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G68955EJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G69113LL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G69118IP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G69749VJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G72018SI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G72082VM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G72406BE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G73271AZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G73518FM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G74782AW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G75333EX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G75359HS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G75734VP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77104ED", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G78742VP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G78890OB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80487YW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G80514ZZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G80804PR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81332EX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81699VA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81796XK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81915YU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82805YZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G83875GK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85856NQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G85891FA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G88315CV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91114LN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91817JL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G92712BL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G93470MW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G94096QV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G94490EL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G95710IM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G98117HW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G99225RS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99897FQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G99935CU", "type": "N-linked", "subtype": "Hybrid" } ], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 162, "end_pos": 164 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 327, "end_pos": 329 }, { "start_pos": 440, "end_pos": 442 } ] }, "class_list": [ "glycan-modifying enzyme", "glycogene", "sulfotransferase" ], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBA5-1", "uniprot_ac": "F1SBA5", "uniprot_id": "F1SBA5_PIG", "mass": { "chemical_mass": 27928.0, "monoisotopic_mass": 27928.0 }, "refseq": { "ac": "XP_020951854", "name": "proteasome subunit alpha type-7-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951854" }, "gene_names": [ { "name": "PSMA8", "type": "recommended", "evidence": [ { "id": "F1SBA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ] }, { "name": "PSMA8", "type": "synonym", "evidence": [ { "id": "XP_020951854", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951854" } ] } ], "protein_names": [ { "name": "Proteasome subunit alpha type", "type": "recommended", "evidence": [ { "id": "F1SBA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBA5/entry#names_and_taxonomy" } ] }, { "name": "proteasome subunit alpha type-7-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951854", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951854" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMA8", "url": "https://www.uniprot.org/uniprotkb/F1SBA5", "locus": { "chromosome": "6", "start_pos": 110837255, "end_pos": 110799283, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003717", "url": "https://www.ensembl.org/id/ENSSSCG00000003717" } ] } } ], "crossref": [ { "id": "F1SBA5", "url": "https://alphafold.ebi.ac.uk/entry/F1SBA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003717", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003717", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03755", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03755", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513739", "url": "https://www.ncbi.nlm.nih.gov/gene/100513739", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000426", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000426", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513739", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513739", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AGTHSEW", "url": "https://omabrowser.org/oma/group/AGTHSEW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBA5", "url": "https://www.orthodb.org/?gene=F1SBA5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10584", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10584", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020951854", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951854", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SBA5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVAIRGTDIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIANDNEAIKLAIRALLEVVQSGGKNIELAIIRRNQPLKMFSAKEIELQVNEIEKEKEEAEKKKSKKTA", "length": 250, "header": "tr|F1SBA5-1|F1SBA5_PIG Isoform 1 of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA8 PE=3 SV=1 CANONICAL=F1SBA5-1" }, "isoforms": [ { "isoform_ac": "F1SBA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SBA5/entry#F1SBA5-1", "sequence": { "sequence": "MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVAIRGTDIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIANDNEAIKLAIRALLEVVQSGGKNIELAIIRRNQPLKMFSAKEIELQVNEIEKEKEEAEKKKSKKTA", "length": 250, "header": "tr|F1SBA5-1|F1SBA5_PIG Isoform 1 of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA8 PE=3 SV=1 CANONICAL=F1SBA5-1" }, "locus": { "chromosome": "6", "start_pos": 110836542, "end_pos": 110799537, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004117.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004117.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004025.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004025.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513739", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513739", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9S8Q9-1", "protein_name": "Proteasome subunit alpha type", "gene_name": "PSMA8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVINKARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIANDNEAIKLAIRALLEVVQSGGKNIELAIIRRNQPLKMFSAKEIELQVNEIEKEKEEAEKKKSKKTT", "length": 250 }, "evidence": [ { "id": "F1SBA5", "url": "https://omabrowser.org/oma/group/F1SBA5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1M6I7-1", "protein_name": "Proteasome subunit alpha type", "gene_name": "Psma8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDNEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELEVTEIEREKDEAEKKKSKKST", "length": 250 }, "evidence": [ { "id": "F1SBA5", "url": "https://omabrowser.org/oma/group/F1SBA5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P30186-1", "protein_name": "Proteasome subunit alpha type-7-A", "gene_name": "PAD1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESAGQETVKLAIRALLEVVESGGKNIEVAVMTREEGVLKQLEEEEIDIIVAEIEAEKAAAEAAKKGPAKET", "length": 250 }, "evidence": [ { "id": "F1SBA5", "url": "https://omabrowser.org/oma/group/F1SBA5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8TAA3-1", "protein_name": "Proteasome subunit alpha-type 8", "gene_name": "PSMA8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGKNIELAIIRRNQPLKMFSAKEVELYVTEIEKEKEEAEKKKSKKSV", "length": 256 }, "evidence": [ { "id": "F1SBA5", "url": "https://omabrowser.org/oma/group/F1SBA5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CWH6-1", "protein_name": "Proteasome subunit alpha type-8", "gene_name": "Psma8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASRYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAGLTADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQSGGKNIELAIIRRDQPLKMFSAKEIELEVSEIEREKDEAEKTKSKKST", "length": 250 }, "evidence": [ { "id": "F1SBA5", "url": "https://omabrowser.org/oma/group/F1SBA5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "spermatoproteasome complex", "id": "GO:1990111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990111", "evidence": [ { "database": "UniProtKB", "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ], "pmid": "" }, { "name": "proteasome core complex, alpha-subunit complex", "id": "GO:0019773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019773", "evidence": [ { "database": "UniProtKB", "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ], "pmid": "" }, { "name": "meiotic cell cycle", "id": "GO:0051321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051321", "evidence": [ { "database": "UniProtKB", "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ], "pmid": "" }, { "name": "regulation of meiosis I", "id": "GO:0060631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060631", "evidence": [ { "database": "UniProtKB", "id": "F1SBA5", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBA5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 250, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBA5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBA5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBA5" }, { "id": "PS00388", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00388" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Proteasome alpha-type subunits", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 27, "start_aa": "Tyr", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 177, "end_pos": 179 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBA7-1", "uniprot_ac": "F1SBA7", "uniprot_id": "F1SBA7_PIG", "mass": { "chemical_mass": 147550.0, "monoisotopic_mass": 147550.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF521", "type": "recommended", "evidence": [ { "id": "F1SBA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ] } ], "protein_names": [ { "name": "Zinc finger protein 521", "type": "recommended", "evidence": [ { "id": "F1SBA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBA7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcription factor that can both act as an activator or a repressor depending on the context. Involved in BMP signaling and in the regulation of the immature compartment of the hematopoietic system. Associates with SMADs in response to BMP2 leading to activate transcription of BMP target genes. Acts as a transcriptional repressor via its interaction with EBF1, a transcription factor involved specification of B-cell lineage; this interaction preventing EBF1 to bind DNA and activate target genes.", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7#function" }, { "database": "UniProtKB", "id": "ARBA00053645", "url": "https://www.uniprot.org/uniprotkb/ARBA00053645#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF521", "url": "https://www.uniprot.org/uniprotkb/F1SBA7", "locus": { "chromosome": "6", "start_pos": 109833614, "end_pos": 110124798, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003715", "url": "https://www.ensembl.org/id/ENSSSCG00000003715" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003715", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003715", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24379:SF128", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24379:SF128", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBA7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBA7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRRKQAKPRSLKDPNCKLEDKTEDGEAIDCKKRPEDGEELEDEAVHSCDSCLQVFESLSDITEHKINQCQLTDGVDVEDDPTCSWPASSPSSKDQTSPSHGEGCDFGEEEGGPGLPYPCQFCDKSFSRLSYLKHHEQSHSDKLPFKCTYCSRLFKHKRSRDRHIKLHTGDKKYHCSECDAAFSRSDHLKIHLKTHTSNKPYKCAICRRGFLSSSSLHGHMQVHERNKDGSQPGSRMEDWKMKDTQKCSQCEEGFDFPEDLQKHIAECHPECSPNEDRAALQCVYCHELFVEETSLMNHMEQMHGGEKKNSCSICSESFHTVEELYSHMDSHQQPESCNHSNSPSLVTVGYTSVSSTTPDSNLSVDSSTMVEAAPPIPKSRGRKRAAQQTPDMAVPSSKQAKVTYSCIYCNKQLFSSLAVLQIHLKTMHLDKPEQAHICQYCLEVLPSLYNLNEHLKQVHEAQDPGLIVSAMPAIVYQCNFCSEVVNDLNTLQEHIRCSHGFANPAAKDSNAFFCPHCYMGFLTDSSLEEHIRQVHCDLSGSRFGSPVLGTPKEPVVEVYSCSYCTNSPIFNSVLKLNKHIKENHKNIPLALNYIHNGKKSRALSPLSPVAIEQTSLKMMQAVGGASARPAGEYICNQCGAKYTSLDSFQTHLKTHLDTVLPKLTCPCNKEFPNQESLLKHVTIHFMITSTYYICESCDKQFTSVDDLQKHLLDMHTFVFFRCTLCQEVFDSKVSIQLHLAVKHSNEKKVYRCTSCNWDFRNETDLQLHVKHNHLENQGKVHKCIFCGESFGTEVELQCHITTHSKKYNCKFCSKAFHAIILLEKHLREKHCVFETKTPNCGANGASEQVQKEEVELQTLLTNSQESHNSHDGSEEDVDTSEPMYGCDICGAAYTMETLLQNHQLRDHNIRPGESAIVKKKAELIKGNYKCNVCSRTFFSENGLREHMQTHLGPVKHYMCPICGERFPSLLTLTEHKVTHSKSLDTGNCRICKMPLQSEEEFLEHCQMHPDLRNSLTGFRCVVCMQTVTSTLELKIHGTFHMQKTGNGSAVQTTGRGQHVPKLYKCASCLKEFRSKQDLVKLDINGLPYGLCAGCVNLSKSASPGINVPAGTNRQGLGPSENLSALEGKGKAGALKTRCSSCNVKFESESELQNHIQTVHRELVPDGNSTQLKTPQVSPMPRISPSQSDEKKTYQCIKCQMVFYNEWDIQVHVANHMIDEGLNHECKLCSQTFDSPAKLQCHLIEHSFEGMGGTFKCPVCFTVFVQANKLQQHIFSAHGQEDKIYDCTQCPQKFFFQTELQNHTMTQHSS", "length": 1310, "header": "tr|F1SBA7-1|F1SBA7_PIG Isoform 1 of Zinc finger protein 521 OS=Sus scrofa OX=9823 GN=ZNF521 PE=3 SV=5 CANONICAL=F1SBA7-1" }, "isoforms": [ { "isoform_ac": "F1SBA7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBA7/entry#F1SBA7-1", "sequence": { "sequence": "MSRRKQAKPRSLKDPNCKLEDKTEDGEAIDCKKRPEDGEELEDEAVHSCDSCLQVFESLSDITEHKINQCQLTDGVDVEDDPTCSWPASSPSSKDQTSPSHGEGCDFGEEEGGPGLPYPCQFCDKSFSRLSYLKHHEQSHSDKLPFKCTYCSRLFKHKRSRDRHIKLHTGDKKYHCSECDAAFSRSDHLKIHLKTHTSNKPYKCAICRRGFLSSSSLHGHMQVHERNKDGSQPGSRMEDWKMKDTQKCSQCEEGFDFPEDLQKHIAECHPECSPNEDRAALQCVYCHELFVEETSLMNHMEQMHGGEKKNSCSICSESFHTVEELYSHMDSHQQPESCNHSNSPSLVTVGYTSVSSTTPDSNLSVDSSTMVEAAPPIPKSRGRKRAAQQTPDMAVPSSKQAKVTYSCIYCNKQLFSSLAVLQIHLKTMHLDKPEQAHICQYCLEVLPSLYNLNEHLKQVHEAQDPGLIVSAMPAIVYQCNFCSEVVNDLNTLQEHIRCSHGFANPAAKDSNAFFCPHCYMGFLTDSSLEEHIRQVHCDLSGSRFGSPVLGTPKEPVVEVYSCSYCTNSPIFNSVLKLNKHIKENHKNIPLALNYIHNGKKSRALSPLSPVAIEQTSLKMMQAVGGASARPAGEYICNQCGAKYTSLDSFQTHLKTHLDTVLPKLTCPCNKEFPNQESLLKHVTIHFMITSTYYICESCDKQFTSVDDLQKHLLDMHTFVFFRCTLCQEVFDSKVSIQLHLAVKHSNEKKVYRCTSCNWDFRNETDLQLHVKHNHLENQGKVHKCIFCGESFGTEVELQCHITTHSKKYNCKFCSKAFHAIILLEKHLREKHCVFETKTPNCGANGASEQVQKEEVELQTLLTNSQESHNSHDGSEEDVDTSEPMYGCDICGAAYTMETLLQNHQLRDHNIRPGESAIVKKKAELIKGNYKCNVCSRTFFSENGLREHMQTHLGPVKHYMCPICGERFPSLLTLTEHKVTHSKSLDTGNCRICKMPLQSEEEFLEHCQMHPDLRNSLTGFRCVVCMQTVTSTLELKIHGTFHMQKTGNGSAVQTTGRGQHVPKLYKCASCLKEFRSKQDLVKLDINGLPYGLCAGCVNLSKSASPGINVPAGTNRQGLGPSENLSALEGKGKAGALKTRCSSCNVKFESESELQNHIQTVHRELVPDGNSTQLKTPQVSPMPRISPSQSDEKKTYQCIKCQMVFYNEWDIQVHVANHMIDEGLNHECKLCSQTFDSPAKLQCHLIEHSFEGMGGTFKCPVCFTVFVQANKLQQHIFSAHGQEDKIYDCTQCPQKFFFQTELQNHTMTQHSS", "length": 1310, "header": "tr|F1SBA7-1|F1SBA7_PIG Isoform 1 of Zinc finger protein 521 OS=Sus scrofa OX=9823 GN=ZNF521 PE=3 SV=5 CANONICAL=F1SBA7-1" }, "locus": { "chromosome": "6", "start_pos": 110123578, "end_pos": 109834404, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004115.6", "url": "https://www.ensembl.org/id/ENSSSCT00000004115.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004023.5", "url": "https://www.ensembl.org/id/ENSSSCP00000004023.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "pmid": "" }, { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SBA7", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1047, "end_pos": 1049, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1097, "end_pos": 1099, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1122, "end_pos": 1124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1168, "end_pos": 1170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1302, "end_pos": 1304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 762, "end_pos": 764, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBA7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 118, "end_pos": 145, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1047, "end_pos": 1049 }, { "start_pos": 1097, "end_pos": 1099 }, { "start_pos": 1122, "end_pos": 1124 }, { "start_pos": 1168, "end_pos": 1170 }, { "start_pos": 1302, "end_pos": 1304 }, { "start_pos": 339, "end_pos": 341 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 762, "end_pos": 764 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBC8-1", "uniprot_ac": "F1SBC8", "uniprot_id": "F1SBC8_PIG", "mass": { "chemical_mass": 117778.0, "monoisotopic_mass": 117778.0 }, "refseq": { "ac": "XP_020951794", "name": "EMILIN-2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951794" }, "gene_names": [ { "name": "EMILIN2", "type": "recommended", "evidence": [ { "id": "F1SBC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ] }, { "name": "EMILIN2", "type": "synonym", "evidence": [ { "id": "XP_020951794", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951794" } ] } ], "protein_names": [ { "name": "EMILIN-2", "type": "recommended", "evidence": [ { "id": "F1SBC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBC8/entry#names_and_taxonomy" } ] }, { "name": "EMILIN-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951794", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951794" } ] }, { "name": "Elastin microfibril interface-located protein 2", "type": "synonym", "evidence": [ { "id": "F1SBC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBC8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EMILIN2", "url": "https://www.uniprot.org/uniprotkb/F1SBC8", "locus": { "chromosome": "6", "start_pos": 103730626, "end_pos": 103786927, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003694", "url": "https://www.ensembl.org/id/ENSSSCG00000003694" } ] } } ], "crossref": [ { "id": "F1SBC8", "url": "https://alphafold.ebi.ac.uk/entry/F1SBC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003694", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003694", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522875", "url": "https://www.ncbi.nlm.nih.gov/gene/100522875", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011489", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011489", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522875", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522875", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SAQPNCC", "url": "https://omabrowser.org/oma/group/SAQPNCC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBC8", "url": "https://www.orthodb.org/?gene=F1SBC8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15427:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15427:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00386", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00386", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07546", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07546", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2129379", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2129379", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020951794", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951794", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SBC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWQRTRARPRAPWRWALALLALGGAGLCHAGPQLRHPVRPSARNKNWCAYIVNKNVSCSVLEGSESFIQAQYNCAWNQMPCPSALVYRVSLRPRYVTRFKTVTQLEWRCCPGFRGGDCQEGPRDAPKTPRPTPTRPRNSVKKATDNEPSQVSEPKKTLSPTPAAEPSWAVDPQQGPQELQEKKIQALEEKVLRLTRTVLDLQSSMAGANENLKHAIQDDASKRLASWLSTRHPQPGPDSAVGGDPETIQLPGVFNNKESGMKDIKSELAEVKDALKTKSDKLEELDGKVKGYEGQLKQLQEAAQGPTVTMTTNELYQAYVDSKIDALREELMEGMDRKLADLKNSCEYKLTGLQQQCDDYGSSYLGMIELIGEKEASLRKEINDLRARVQNPSARANCCDSAKNGDFGQQIKMLDQKIERVAEATRMLNGRLDNEFDRLLVPEPEVDFEARWSELDARINVTEKNAEEHCFYIEETLRGTINGEVDDLKQLLDRKIQSLEERLGSGLLEMANSTEAGLAPPGLGLPGRSGAGNKQVLVELSHLKDRVQAVEAVCLQSVQGELLGVEDALPKGDHTAGDTRSLRKSLNDTVHRKFLETERSIRTLQQDFSFLYSQLNRTEDQVSQLQMELSGCREGQNTGVGGSAKGGETAEMEGPLPSPQGWPGPCCGQLEERWQRLQGQVLAELDTCKEKTHGVQREVSVVEDRVSRMEKTCSKLDSISGSLQKIKEGLNKHVGGLWSCVRQMNGTLRAHSRDIAGLKNSVQQFYSHVFQISTDLQDLIKFQPSSSSAEESSEAPPPPPRGTPPPAAPSDPSPALPPPQPSPPPPREDPGRPHTGQRPVLPRRPTQPPPSRAWPGWMGLPFLPGSTGVITETGEAGPPGRVGVSGRGLPQGADGHTQPGLVPSAEGYAGAPGYPKSPPVASPGVPVPSLVSFSAGLTQKPFPSDGGVVLFNKVLVNDGDVYDPSTGVFTAPYEGRYLITATLTPERDAYVEAVLSVSNASVAQLHTAGYRREFLEYHRPQGAPHTCGGPGAFHLVVHLKAGDGVNIVVTGGRLAHTDFDEMYSTFSGVFLYPFLSHL", "length": 1078, "header": "tr|F1SBC8-1|F1SBC8_PIG Isoform 1 of EMILIN-2 OS=Sus scrofa OX=9823 GN=EMILIN2 PE=1 SV=3 CANONICAL=F1SBC8-1" }, "isoforms": [ { "isoform_ac": "F1SBC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SBC8/entry#F1SBC8-1", "sequence": { "sequence": "MWQRTRARPRAPWRWALALLALGGAGLCHAGPQLRHPVRPSARNKNWCAYIVNKNVSCSVLEGSESFIQAQYNCAWNQMPCPSALVYRVSLRPRYVTRFKTVTQLEWRCCPGFRGGDCQEGPRDAPKTPRPTPTRPRNSVKKATDNEPSQVSEPKKTLSPTPAAEPSWAVDPQQGPQELQEKKIQALEEKVLRLTRTVLDLQSSMAGANENLKHAIQDDASKRLASWLSTRHPQPGPDSAVGGDPETIQLPGVFNNKESGMKDIKSELAEVKDALKTKSDKLEELDGKVKGYEGQLKQLQEAAQGPTVTMTTNELYQAYVDSKIDALREELMEGMDRKLADLKNSCEYKLTGLQQQCDDYGSSYLGMIELIGEKEASLRKEINDLRARVQNPSARANCCDSAKNGDFGQQIKMLDQKIERVAEATRMLNGRLDNEFDRLLVPEPEVDFEARWSELDARINVTEKNAEEHCFYIEETLRGTINGEVDDLKQLLDRKIQSLEERLGSGLLEMANSTEAGLAPPGLGLPGRSGAGNKQVLVELSHLKDRVQAVEAVCLQSVQGELLGVEDALPKGDHTAGDTRSLRKSLNDTVHRKFLETERSIRTLQQDFSFLYSQLNRTEDQVSQLQMELSGCREGQNTGVGGSAKGGETAEMEGPLPSPQGWPGPCCGQLEERWQRLQGQVLAELDTCKEKTHGVQREVSVVEDRVSRMEKTCSKLDSISGSLQKIKEGLNKHVGGLWSCVRQMNGTLRAHSRDIAGLKNSVQQFYSHVFQISTDLQDLIKFQPSSSSAEESSEAPPPPPRGTPPPAAPSDPSPALPPPQPSPPPPREDPGRPHTGQRPVLPRRPTQPPPSRAWPGWMGLPFLPGSTGVITETGEAGPPGRVGVSGRGLPQGADGHTQPGLVPSAEGYAGAPGYPKSPPVASPGVPVPSLVSFSAGLTQKPFPSDGGVVLFNKVLVNDGDVYDPSTGVFTAPYEGRYLITATLTPERDAYVEAVLSVSNASVAQLHTAGYRREFLEYHRPQGAPHTCGGPGAFHLVVHLKAGDGVNIVVTGGRLAHTDFDEMYSTFSGVFLYPFLSHL", "length": 1078, "header": "tr|F1SBC8-1|F1SBC8_PIG Isoform 1 of EMILIN-2 OS=Sus scrofa OX=9823 GN=EMILIN2 PE=1 SV=3 CANONICAL=F1SBC8-1" }, "locus": { "chromosome": "6", "start_pos": 103786720, "end_pos": 103731153, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004093.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004093.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004001.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004001.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 132, "start_aa": "Thr", "end_pos": 132, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr132", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 161, "start_aa": "Thr", "end_pos": 161, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr161", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522875", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522875", "resource": "KEGG Pathway" }, { "id": "R-SSC-2129379", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2129379", "resource": "Reactome", "description": "Molecules associated with elastic fibres" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X207-1", "protein_name": "EMILIN-2", "gene_name": "EMILIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MELCPGPAAPSGWALPLLLALGAGLSHATPHLRYSRPGSRSKNWCAYIVNKNVSCSVLDGTESYVQAQYKCAWNEFPCRPTPVYRTSFRPRYTVAYKTVTELEWRCCPGYKGEDCREGPSEQPRAARRPTTPAKAIVKKGLDAEPTEVPEPPPHEKKMQFFEEELFRLTRSVIDLQSSLARVNENLKLTVQEDASKMLVTWLNNLYDRPEPDSAVSGETDSIHLPGLLSNKDQKDPFLDFEVEDLKSELAEVKEALKNRNDKLEELNGKVKGYEGQLKQLQEAAQGPTITMPSDNIYREYIDSKFESLRQELLEGFEKKMADLKNSCEYKLQDIQQQCDDNENNCLGIIDVIKGKENDLKKEINSLRTQIPSNHSCCCKEGERNDLNQQIKDLDKKLDRVVEAHRILNVRIDNEISHLSTPDLEDMFGERLEELDARMNITERNAEEHCFYIEETLRNTIAVEADELRDLFDQKLRALEDRLGGTILEMANTTDPDGMYMNPVPIMPGDTGFANEQFTAEMNLMKNKLLSLERLCGQKCQSAPQGTEDLQKELENCNNNYSHLLMKTENNSALLQFLNSSLNEKINLIKGNQRDNQKIQRDLRVLRYSLNVMDKDVKNIQDGLNSCKEQLLGVNSTCRKTQRGVYRKIDQMQKTFANQTIHPSDNCCSDVRERLEQLNDQILNDRGKCKEKTHGMQDGVSDVESRVSRVEKVCGKLDSVSGSLQKIKEGLDKHVSSLWNCIREMNGTISSHSKDISGLKNSVQRFYSQISKITTDMEGMLKSQSDTRQPEAPRQAVPPRPPLQPQPGTPLLPSRPRIQPPRQRPPLQPPQPRPARPALPGSALTPFLPGTTGIILETGEAGPPGTVLMSGRGRLRSVDGQAGQSTMPIAEGYAGAPGYPKLSPPTIDSQGPAAAAASLVSFSAGLTQKPFSSDVGVVHFNKVLVNDGDYYNPNTGIFTSPFEGRYLITAVLAPERDEYVEAVLSVSNASVAQLHTAGYRRELLEYHKPYSGKRTCGGPGTFHLVLHLKAGDEVNVVVTGGKLAYTDSDEMYSTFSGVLLYPSISHV", "length": 1066 }, "evidence": [ { "id": "F1SBC8", "url": "https://omabrowser.org/oma/group/F1SBC8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1LXD8-1", "protein_name": "EMILIN-2", "gene_name": "Emilin2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCQETPPRPRAPSRWTPALLALLALGGAGLCHASSQPGYHARPSARNKNWCAYIVNKNVSCTVQEGSESFIQAQYNCPWNQMPCPSALVYRVNFRPRFVTRYKIVTQLEWRCCPGFRGADCQEGPKDAMKTPRTPPVRPRNNLKKATDTDPSQVSQPKKTLSPTNATEPGQVADPKQGPPEFQQTKVQVLEEKVVRLTRMVLDLQSSVSGLKENLKHTIQDDGSKEPASWLGPLHPQPTPDGTFAGDAEPSQLPGILNSKESGMKDIKSELAEVKDTLKTKSDKLEELDGKVKGYEGQLKQLQEAAQGPTVTMTTNELFQAYVDSKIDALREELMEGMDRKLADLKNTCEYKLVGLQQQCDDYGSSYLGVIELIGEKEASLKKDIADLRARLQDPTAQPSCCDGQKNGDFGPQIKTLDQKIERVAEATRMLNGRLDNEFDRLSFPEPDADFDARWNELDARINVTEKNAEEHCFYIEETLRGAINGEVDDLRKLLNEKIHSLEDRLGIILQVTNGSDLELTPVGPALSGQPGQPGQPGAENEQLLRELSRLKDKVQVVEDICLQSLPHGIDGALPSGEDLTHVGLSLLESLNDTMHRQFQETSHSIQKLQEDFSALYSQLNHSEYTGTRLPNGVSDSMEASGFTKTGEQERTVGTVPSPGGPVAPCCGQLEERWQRLQNQVLAELDTCKESAHGVQSGVSAVEGRVSQLEKTCSRLDAISGSLQRIKEGLGKHVGSLWNCVRQMNGTLRSHSRDISGLKNSVQQFYSHVFQISTDLQDLVKFQPSATEEPLEATQGPSGKTPLESTRPLEEAPTEPPRLTPLPEHPAGPPQIGQRPVLPQRPLQPPPLPAWPGRMGLPVLPGSSGVIMETGEAGPPGRMGMSGRGLPQGVDGQMGQGPIPSSEGYAGAPGYPKSPPVATPGVSLPALVSFSAGLTQKPFPSDGGVVLFNKVLVNDGDVYNPSTGIFTAPYDGRYLITATLTPERDAYVEAVLSVSNASVAQLHTAGYRREFLEYHRPPGAVHTCGGPGAFHLIVHLKAGDGVNVVVTGGRLAHTDFDEMYSTFSGVFLYPFLSHL", "length": 1075 }, "evidence": [ { "id": "F1SBC8", "url": "https://omabrowser.org/oma/group/F1SBC8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8K482-1", "protein_name": "EMILIN-2", "gene_name": "Emilin2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCQETPPRPRAPSRWTPALLALLALGGAGLCHASSQPGYHARPSARNKNWCAYIVNKNVSCTVQEGSESFIQAQYNCPWNQMPCPSALVYRVNFRPRFVTRYKIVTQLEWRCCPGFRGPDCQEGPKDHMKTPRPPSARPKNNLKKATDTDPSQVSQPKKTLSPTNAVEPGQVADAKQGPPELQQSKVQVLEEKVVRLTRMVLDLQSTVVGLKENLKHTIQDDGRKEPDSWLGPLHPQPTPDSPLAGDAEPSQLPGIPSSKESGMKDIKSELAEVKDTLKTKSDKLEELDGKVKGYEGQLKQLQEAAQGPTVTMTTNELYQAYVDSKIDALREELMEGMDRKLADLKNTCEYKLVGLQQQCDDYGSSYLGVIELIGEKEASLKKDIADLRAQLQDPVAQPSCCNGQKSSDFGPQIKALDQKIERVAEATRMLNGRLDNEFDRLSVPEPDADFDARWTELDARINVTEKNAEEHCFYIEETLRGTINGEVDDLRKLLNEKIHSLEDRLGIVLQAANSSDVELTPMGPALPEQPGAENEQVLMELSRLKDKVQVVEDFCLQSLPHGIDGALPSVEDLTHVSLSLLESLNDTMHRQFQETSHSIQKLQEDVNALHSQLNHSECTGTYLQNGVSDSRTGDSMEASGFTKTGEQERTVGTVPSPGTPAAPCCGQLEERWQKLQNQMLAELDTCKESAHGVQSGVSAIEGRVFQLEQTCRRLDTISGSLQRIKEGLGKHVGSLWNCIRQMNGTLKSHSRDISGLKNSVQQFYSHVFQISTDLQDLVKFQPSATEEPSEATEGPSGKTPLESTRPSEEAPTEPPRLTPLPEDPAGPPQTGQQPVLPQRPLQPPPLPAWPGRTGLPFLPGSSGVIMETGEAGPPGRMGVSGRGLPRGVDGQMGQGPIHSSEGYAGAPGYPKSPPVTTPGVPLPTLVSFSAGLTQKPFPSDGGVVLFNKVLVNDGDVYNPNTGIFTAPYDGRYLITATLTPERDTYVEAVLSVSNASVAQLHTAGYRREFLEYHRPPGAVHTCGGPGAFHLIVHLKAGDGVNVVVTGGRLAHTDFDEMYSTFSGVFLYPFLSHL", "length": 1074 }, "evidence": [ { "id": "F1SBC8", "url": "https://omabrowser.org/oma/group/F1SBC8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BXX0-1", "protein_name": "EMILIN-2", "gene_name": "EMILIN2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWQPRRPWPRVPWRWALALLALVGAGLCHAGPQPGYPARPSARNKNWCAYIVNKNVSCSVLEGSESFIQAQYNCAWNQMPCPSALVYRVNFRPRYVTRYKTVTQLEWRCCPGFRGGDCQEGPKDPVKTLRPTPARPRNSLKKATDNEPSQFSEPRKTLSPTGTAQPSWGVDPKEGPQELQEKKIQVLEEKVLRLTRTVLDLQSSLAGVSENLKHATQDDASRTRAPGLSSQHPKPDTTVSGDTETGQSPGVFNTKESGMKDIKSELAEVKDTLKNKSDKLEELDGKVKGYEGQLRQLQEAAQGPTVTMTTNELYQAYVDSKIDALREELMEGMDRKLADLKNSCEYKLTGLQQQCDDYGSSYLGVIELIGEKETSLRKEINNLRARLQEPSAQANCCDSEKNGDIGQQIKTLDQKIERVAEATRMLNGRLDNEFDRLIVPEPDVDFDAKWNELDARINVTEKNAEEHCFYIEETLRGAINGEVGDLKQLVDQKIQSLEDRLGSVLLQMTNNTGAELSPPGAAALPGVSGSGDERVMMELNHLKDKVQVVEDICLLNIQGKPHGMEGALPNREDRAVRDSLHLLKSLNDTMHRKFQETEQTIQKLQQDFSFLYSQLNHTENDVTHLQKEMSNCRAGENAGMGRFTKVGEQERTVDTLPSPQHPVAHCCSQLEERWQRLQSQVISELDACKECTQGVQREVSMVEGRVSHMEKTCSKLDSISGNLQRIKEGLNKHVSSLWNCVRQMNGTLRSHSRDISGLKNSVQQFYSHVFQISTDLQDLVKFQPSAKAPSPPPPAEAPKEPLQPEPAPPRPSGPATAEDPGRRPVLPQRPPEERPPQPPGSTGVIAETGQAGPPAGAGVSGRGLPRGVDGQTGSGTVPGAEGFAGAPGYPKSPPVASPGAPVPSLVSFSAGLTQKPFPSDGGVVLFNKVLVNDGDVYNPSTGVFTAPYDGRYLITATLTPERDAYVEAVLSVSNASVAQLHTAGYRREFLEYHRPPGALHTCGGPGAFHLIVHLKAGDAVNVVVTGGKLAHTDFDEMYSTFSGVFLYPFLSHL", "length": 1053 }, "evidence": [ { "id": "F1SBC8", "url": "https://omabrowser.org/oma/group/F1SBC8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "pmid": "" }, { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "pmid": "" }, { "name": "negative regulation of cell migration", "id": "GO:0030336", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030336", "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "pmid": "" }, { "name": "positive regulation of angiogenesis", "id": "GO:0045766", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045766", "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "pmid": "" }, { "name": "positive regulation of blood coagulation", "id": "GO:0030194", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030194", "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "pmid": "" }, { "name": "positive regulation of defense response to bacterium", "id": "GO:1900426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900426", "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "pmid": "" }, { "name": "positive regulation of platelet aggregation", "id": "GO:1901731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901731", "evidence": [ { "database": "UniProtKB", "id": "F1SBC8", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 512, "end_pos": 514, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" }, { "start_pos": 587, "end_pos": 589, "annotation": "n_glycosylation_sequon" }, { "start_pos": 616, "end_pos": 618, "annotation": "n_glycosylation_sequon" }, { "start_pos": 745, "end_pos": 747, "annotation": "n_glycosylation_sequon" }, { "start_pos": 999, "end_pos": 1001, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBC8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1078, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBC8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBC8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" }, { "id": "PS50871", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50871" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C1q", "eco_id": "ECO_0000259", "start_pos": 926, "end_pos": 1077, "start_aa": "Pro", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBC8" }, { "id": "PS51041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EMI", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 120, "start_aa": "Asn", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 132, 161 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 460, "end_pos": 462 }, { "start_pos": 512, "end_pos": 514 }, { "start_pos": 55, "end_pos": 57 }, { "start_pos": 587, "end_pos": 589 }, { "start_pos": 616, "end_pos": 618 }, { "start_pos": 745, "end_pos": 747 }, { "start_pos": 999, "end_pos": 1001 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBG9-1", "uniprot_ac": "F1SBG9", "uniprot_id": "F1SBG9_PIG", "mass": { "chemical_mass": 82046.0, "monoisotopic_mass": 82046.0 }, "refseq": {}, "gene_names": [ { "name": "SLC24A3", "type": "recommended", "evidence": [ { "id": "F1SBG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" } ] } ], "protein_names": [ { "name": "Solute carrier family 24 member 3", "type": "synonym", "evidence": [ { "id": "F1SBG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBG9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBG9", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC24A3", "url": "https://www.uniprot.org/uniprotkb/F1SBG9", "locus": { "chromosome": "17", "start_pos": 27780526, "end_pos": 27270093, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007100", "url": "https://www.ensembl.org/id/ENSSSCG00000007100" } ] } } ], "crossref": [ { "id": "F1SBG9", "url": "https://alphafold.ebi.ac.uk/entry/F1SBG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007100", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007100", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004481", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004481", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10846", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10846", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10846:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10846:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-425561", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-425561", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "69967", "url": "https://www.rhea-db.org/rhea/69967", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SBG9", "url": "https://www.uniprot.org/uniprotkb/F1SBG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBG9-1", "url": "https://www.uniprot.org/uniprotkb/F1SBG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAREEDGDPERREAAARASGDEEEDDGEEGLSDSDDEDEDRETGGSREEEGEAAAAAGQERSEDTPPPSAEPPPAAVPAAAARDRSGRRPPGPPTGPPPCLPRRMPPSPDEEERERRRSRRRDLLLSQICFLALVALLLWSLSSMQEHDDLDFMDLIGQDRQWTVGRKLMQVNDTLTSEDTGLRSSKNCTEPALHEFPSDIFTNEDRRQGAVVLHVLCAMYMFYALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSSWCLLRDSIYYTLSVVALIVFIYDEQVSWWESLVLVLMYLVYIVIMKYNACIHQCFERRAKGAGNMVNGLANNAEIDDSSNCNATVVLLKRANFHRKASVIMVDELLSAYPHQLSFSEAGLRIMITSHPPKTRLSMASRMLINERQRLINSRAYANGESEVAIKIPIKHTVENGTGPSSAPDRGVNGTRRDDVVAEAGNETENENENDENDEEEDEEDEEGPYTPFDPPSGKLETVKWAFTWPLSFVLYFTVPNCNKPRWEKWFMVTFASSTLWIAAFSYMMVWMVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNVFDILIGLGLPWALQTLAVDYGSYIRLNSRGLIYSVGLLLASVFVTVFGVHLNKWQLDKKLGCGCLFLYGVFLCFSIMTEFNVFTFVNLPMCGDH", "length": 743, "header": "tr|F1SBG9-1|F1SBG9_PIG Isoform 1 of Solute carrier family 24 member 3 OS=Sus scrofa OX=9823 GN=SLC24A3 PE=3 SV=4 CANONICAL=F1SBG9-1" }, "isoforms": [ { "isoform_ac": "F1SBG9-1", "url": "https://www.uniprot.org/uniprotkb/F1SBG9/entry#F1SBG9-1", "sequence": { "sequence": "MAREEDGDPERREAAARASGDEEEDDGEEGLSDSDDEDEDRETGGSREEEGEAAAAAGQERSEDTPPPSAEPPPAAVPAAAARDRSGRRPPGPPTGPPPCLPRRMPPSPDEEERERRRSRRRDLLLSQICFLALVALLLWSLSSMQEHDDLDFMDLIGQDRQWTVGRKLMQVNDTLTSEDTGLRSSKNCTEPALHEFPSDIFTNEDRRQGAVVLHVLCAMYMFYALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSSWCLLRDSIYYTLSVVALIVFIYDEQVSWWESLVLVLMYLVYIVIMKYNACIHQCFERRAKGAGNMVNGLANNAEIDDSSNCNATVVLLKRANFHRKASVIMVDELLSAYPHQLSFSEAGLRIMITSHPPKTRLSMASRMLINERQRLINSRAYANGESEVAIKIPIKHTVENGTGPSSAPDRGVNGTRRDDVVAEAGNETENENENDENDEEEDEEDEEGPYTPFDPPSGKLETVKWAFTWPLSFVLYFTVPNCNKPRWEKWFMVTFASSTLWIAAFSYMMVWMVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGMGDMAVSNSIGSNVFDILIGLGLPWALQTLAVDYGSYIRLNSRGLIYSVGLLLASVFVTVFGVHLNKWQLDKKLGCGCLFLYGVFLCFSIMTEFNVFTFVNLPMCGDH", "length": 743, "header": "tr|F1SBG9-1|F1SBG9_PIG Isoform 1 of Solute carrier family 24 member 3 OS=Sus scrofa OX=9823 GN=SLC24A3 PE=3 SV=4 CANONICAL=F1SBG9-1" }, "locus": { "chromosome": "17", "start_pos": 27778797, "end_pos": 27270292, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007772.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007772.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007563.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007563.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBG9", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-425561", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-425561", "resource": "Reactome", "description": "Sodium/Calcium exchangers" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium channel activity", "id": "GO:0005262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005262", "evidence": [ { "database": "UniProtKB", "id": "F1SBG9", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" } ], "pmid": "" }, { "name": "symporter activity", "id": "GO:0015293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015293", "evidence": [ { "database": "UniProtKB", "id": "F1SBG9", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" } ], "pmid": "" }, { "name": "calcium, potassium:sodium antiporter activity", "id": "GO:0008273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008273", "evidence": [ { "database": "UniProtKB", "id": "F1SBG9", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBG9", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular calcium ion homeostasis", "id": "GO:0006874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006874", "evidence": [ { "database": "UniProtKB", "id": "F1SBG9", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" } ], "pmid": "" }, { "name": "calcium ion transmembrane transport", "id": "GO:0070588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070588", "evidence": [ { "database": "UniProtKB", "id": "F1SBG9", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 497, "end_pos": 499, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "69967", "name": "", "equation": "Ca(2+)(out) + K(+)(out) + 4 Na(+)(in) = Ca(2+)(in) + K(+)(in) + 4 Na(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "69967", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/69967" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBG9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 743, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBG9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBG9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBG9" }, { "id": "PF01699", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01699" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sodium/calcium exchanger membrane region", "eco_id": "ECO_0000259", "start_pos": 217, "end_pos": 357, "start_aa": "Leu", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 173, "end_pos": 175 }, { "start_pos": 188, "end_pos": 190 }, { "start_pos": 394, "end_pos": 396 }, { "start_pos": 484, "end_pos": 486 }, { "start_pos": 497, "end_pos": 499 }, { "start_pos": 510, "end_pos": 512 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBH4-1", "uniprot_ac": "F1SBH4", "uniprot_id": "F1SBH4_PIG", "mass": { "chemical_mass": 35656.0, "monoisotopic_mass": 35656.0 }, "refseq": { "ac": "XP_003483946", "name": "DNA-directed RNA polymerase III subunit RPC6 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483946" }, "gene_names": [ { "name": "POLR3F", "type": "recommended", "evidence": [ { "id": "F1SBH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ] }, { "name": "POLR3F", "type": "synonym", "evidence": [ { "id": "XP_003483946", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483946" } ] } ], "protein_names": [ { "name": "DNA-directed RNA polymerase III subunit RPC6", "type": "recommended", "evidence": [ { "id": "F1SBH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH4/entry#names_and_taxonomy" } ] }, { "name": "DNA-directed RNA polymerase III subunit RPC6 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003483946", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483946" } ] }, { "name": "RNA polymerase III subunit C6", "type": "synonym", "evidence": [ { "id": "F1SBH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4#function" }, { "database": "UniProtKB", "id": "PIRNR028763", "url": "https://www.uniprot.org/uniprotkb/PIRNR028763#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLR3F", "url": "https://www.uniprot.org/uniprotkb/F1SBH4", "locus": { "chromosome": "17", "start_pos": 26737626, "end_pos": 26719514, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007095", "url": "https://www.ensembl.org/id/ENSSSCG00000007095" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007095", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007095", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100738796", "url": "https://www.ncbi.nlm.nih.gov/gene/100738796", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738796", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738796", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VGTTKKC", "url": "https://omabrowser.org/oma/group/VGTTKKC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBH4", "url": "https://www.orthodb.org/?gene=F1SBH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12780", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12780", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05158", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05158", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-76061", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76061", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-76066", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76066", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-76071", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76071", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003483946", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483946", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIISPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF", "length": 316, "header": "tr|F1SBH4-1|F1SBH4_PIG Isoform 1 of DNA-directed RNA polymerase III subunit RPC6 OS=Sus scrofa OX=9823 GN=POLR3F PE=3 SV=1 CANONICAL=F1SBH4-1" }, "isoforms": [ { "isoform_ac": "F1SBH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH4/entry#F1SBH4-1", "sequence": { "sequence": "MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIISPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF", "length": 316, "header": "tr|F1SBH4-1|F1SBH4_PIG Isoform 1 of DNA-directed RNA polymerase III subunit RPC6 OS=Sus scrofa OX=9823 GN=POLR3F PE=3 SV=1 CANONICAL=F1SBH4-1" }, "locus": { "chromosome": "17", "start_pos": 26736571, "end_pos": 26719652, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007767.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007767.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007558.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007558.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738796", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738796", "resource": "KEGG Pathway" }, { "id": "R-SSC-76061", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76061", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 1 Promoter" }, { "id": "R-SSC-76066", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76066", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 2 Promoter" }, { "id": "R-SSC-76071", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76071", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 3 Promoter" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LHN4-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC6", "gene_name": "Polr3f", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKETQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF", "length": 316 }, "evidence": [ { "id": "F1SBH4", "url": "https://omabrowser.org/oma/group/F1SBH4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9S0Z5-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC6", "gene_name": "POLR3F", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGPVSFFLSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF", "length": 323 }, "evidence": [ { "id": "F1SBH4", "url": "https://omabrowser.org/oma/group/F1SBH4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZQ56-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC6", "gene_name": "Polr3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAPSRPHEEGPARPKEEGPSSLPRPHPWRAPPPVPENSSALLRATFPLVLKTTLMAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVDMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF", "length": 371 }, "evidence": [ { "id": "F1SBH4", "url": "https://omabrowser.org/oma/group/F1SBH4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q921X6-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC6", "gene_name": "Polr3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPILPPTGVVRAPCGLCPVFEDCHEGGEISPSNCIYMTEWLEF", "length": 316 }, "evidence": [ { "id": "F1SBH4", "url": "https://omabrowser.org/oma/group/F1SBH4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H1D9-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC6", "gene_name": "POLR3F", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEVKVKVQPPDADPVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPIIPPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF", "length": 316 }, "evidence": [ { "id": "F1SBH4", "url": "https://omabrowser.org/oma/group/F1SBH4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9LSZ5-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC6", "gene_name": "MQM1.2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSKRKRPDPKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLRKKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERHRQRVVTLEVLCGYFVKEEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGEVCYRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF", "length": 230 }, "evidence": [ { "id": "F1SBH4", "url": "https://omabrowser.org/oma/group/F1SBH4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VD25-1", "protein_name": "DNA-directed RNA polymerase III subunit RPC6", "gene_name": "Polr3F", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MATEVSQLLLAVVQGIPAGATNDDLTKALPDVPAATRVEALNILLQEGGIEILKKGEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKILKNLETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAERVRQQDGSFVYRAVNAPLPPTGLVQMPCGICPVIKNCSNCGDVTAITCEYMRDWLD", "length": 293 }, "evidence": [ { "id": "F1SBH4", "url": "https://omabrowser.org/oma/group/F1SBH4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "pmid": "" }, { "name": "RNA polymerase III complex", "id": "GO:0005666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005666", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "4 iron, 4 sulfur cluster binding", "id": "GO:0051539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051539", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "pmid": "" }, { "name": "double-stranded DNA binding", "id": "GO:0003690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003690", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "termination of RNA polymerase III transcription", "id": "GO:0006386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006386", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "pmid": "" }, { "name": "positive regulation of innate immune response", "id": "GO:0045089", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045089", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "pmid": "" }, { "name": "transcription initiation at RNA polymerase III promoter", "id": "GO:0006384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006384", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "pmid": "" }, { "name": "positive regulation of interferon-beta production", "id": "GO:0032728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032728", "evidence": [ { "database": "UniProtKB", "id": "F1SBH4", "url": "https://www.uniprot.org/uniprotkb/F1SBH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 207, "end_pos": 209 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBH7-1", "uniprot_ac": "F1SBH7", "uniprot_id": "F1SBH7_PIG", "mass": { "chemical_mass": 88650.0, "monoisotopic_mass": 88650.0 }, "refseq": { "ac": "XP_013840558", "name": "lysine acetyltransferase 14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840558" }, "gene_names": [ { "name": "KAT14", "type": "recommended", "evidence": [ { "id": "F1SBH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ] }, { "name": "KAT14", "type": "synonym", "evidence": [ { "id": "XP_013840558", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840558" } ] } ], "protein_names": [ { "name": "Cysteine-rich protein 2-binding protein", "type": "recommended", "evidence": [ { "id": "F1SBH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH7/entry#names_and_taxonomy" } ] }, { "name": "ADA2A-containing complex subunit 2", "type": "synonym", "evidence": [ { "id": "F1SBH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH7/entry#names_and_taxonomy" } ] }, { "name": "CRP2-binding partner", "type": "synonym", "evidence": [ { "id": "F1SBH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH7/entry#names_and_taxonomy" } ] }, { "name": "Lysine acetyltransferase 14", "type": "synonym", "evidence": [ { "id": "F1SBH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH7/entry#names_and_taxonomy" } ] }, { "name": "lysine acetyltransferase 14", "type": "synonym", "evidence": [ { "id": "XP_013840558", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840558" } ] } ], "function": [ { "annotation": "Component of the ATAC complex, a complex with histone acetyltransferase activity on histones H3 and H4. May function as a scaffold for the ATAC complex to promote ATAC complex stability. Has also weak histone acetyltransferase activity toward histone H4. Required for the normal progression through G1 and G2/M phases of the cell cycle.", "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7#function" }, { "database": "UniProtKB", "id": "ARBA00053435", "url": "https://www.uniprot.org/uniprotkb/ARBA00053435#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KAT14", "url": "https://www.uniprot.org/uniprotkb/F1SBH7", "locus": { "chromosome": "17", "start_pos": 26521525, "end_pos": 26485157, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007092", "url": "https://www.ensembl.org/id/ENSSSCG00000007092" } ] } } ], "crossref": [ { "id": "F1SBH7", "url": "https://alphafold.ebi.ac.uk/entry/F1SBH7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007092", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007092", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04301", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04301", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152392", "url": "https://www.ncbi.nlm.nih.gov/gene/100152392", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152392", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152392", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PRRNWPW", "url": "https://omabrowser.org/oma/group/PRRNWPW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBH7", "url": "https://www.orthodb.org/?gene=F1SBH7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20916", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20916", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20916:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20916:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00583", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00583", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013840558", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840558", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBH7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METNIHLGSLISRHDDEATRTSTSEGLEEGEVEGETLLIVESEDQASVDLSHDQSGDSLNSDEGDMSWMEEQLSYFCDKCQKWIPASQLREQLSYLKGDNFFRFTCSDCSEDGKEQYERLKLTWQQVVMLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMYFRSGAQEFGEPGWWKLVHSRPPTLKPEGEKLATSALKVKASKPTLDPIITVEGLRKRASRNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFVSRGRRPDMILEKGEVIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDELEGDGVIDPGMEYVPPPACSSASGTGVGGRKKVRAPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQTRAREKRKQALEKDRKPKGPKFTPVSIYEEKLLLKRLEACPGAVAMTPEARRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKDGGVSRLPAGQATYRTTCQDFRILDRYQTALPSRKGFRHQTSKFLYRLVGSEDMAVDQSIVSPYTSRILKPYIRRDYETKPPKLQLLSQIRSHLHRSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGVDLSECLQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCMGKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR", "length": 781, "header": "tr|F1SBH7-1|F1SBH7_PIG Isoform 1 of Cysteine-rich protein 2-binding protein OS=Sus scrofa OX=9823 GN=KAT14 PE=4 SV=4 CANONICAL=F1SBH7-1" }, "isoforms": [ { "isoform_ac": "F1SBH7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBH7/entry#F1SBH7-1", "sequence": { "sequence": "METNIHLGSLISRHDDEATRTSTSEGLEEGEVEGETLLIVESEDQASVDLSHDQSGDSLNSDEGDMSWMEEQLSYFCDKCQKWIPASQLREQLSYLKGDNFFRFTCSDCSEDGKEQYERLKLTWQQVVMLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMYFRSGAQEFGEPGWWKLVHSRPPTLKPEGEKLATSALKVKASKPTLDPIITVEGLRKRASRNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFVSRGRRPDMILEKGEVIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDELEGDGVIDPGMEYVPPPACSSASGTGVGGRKKVRAPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQTRAREKRKQALEKDRKPKGPKFTPVSIYEEKLLLKRLEACPGAVAMTPEARRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKDGGVSRLPAGQATYRTTCQDFRILDRYQTALPSRKGFRHQTSKFLYRLVGSEDMAVDQSIVSPYTSRILKPYIRRDYETKPPKLQLLSQIRSHLHRSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGVDLSECLQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCMGKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR", "length": 781, "header": "tr|F1SBH7-1|F1SBH7_PIG Isoform 1 of Cysteine-rich protein 2-binding protein OS=Sus scrofa OX=9823 GN=KAT14 PE=4 SV=4 CANONICAL=F1SBH7-1" }, "locus": { "chromosome": "17", "start_pos": 26520966, "end_pos": 26485294, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007764.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007764.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007555.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007555.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 338, "start_aa": "Thr", "end_pos": 338, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr338", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 345, "start_aa": "Thr", "end_pos": 345, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr345", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152392", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152392", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZEF4-1", "protein_name": "Cysteine-rich protein 2-binding protein", "gene_name": "KAT14", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MANNVHMSGLLSRHDDEATRTSTSEGLEEGEVEGETLLIVESEDQASVDLSHDQSGDSLNSDEGDASWMEEMSYYCEKCQKWIPASQLREQLSYLKGDNFFRFTCSDCSEDGKEQFERLRLTWQQVVMLAMYNLSLEGTGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPLYFRSGAQEFGEPGWWKLVHNKPPTMKPEGEKLSASALKAKAASKPPLDPIITVEGLRKRVSRNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFSSRGRRPDIVLEKGEVIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDEEMEGDGVIDPGIEYVPTPSGTAGAGTMIASRKKVKTAEQIKQEVESEEEKTERMEGDSEDPEESNTSLQLRGRDKRKPQLEKDAKPRAPKHTSVSIYEEKLLLKRLEACPNALSMTPEARRLRRKLIVRQAKRERGLPLFDLDQVVNAALLLVDGIYGAKEGVSRSPVGQATYRTTSQDFRILDRYQTVLPAMKGYRQQTTKFLYRLVGSEDLLPDHSIVSPYTSRVLKPYIRRDYETKPPKLRLLAEIWAYPHRNDLNWKAEPEAPIDYCYVRPNHIPTINSMCHEFFWPGIDLSECLQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCMGKDVTLHVSASNPAMLLYQKFGFKTEEYILDFYDKYYPLDSKECKHAFFLRLRR", "length": 781 }, "evidence": [ { "id": "F1SBH7", "url": "https://omabrowser.org/oma/group/F1SBH7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZSX8-1", "protein_name": "Cysteine-rich protein 2-binding protein", "gene_name": "Kat14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIHLSGLLSRHDDEATRTSTSEGLEEGEVEGETLLIVESEDQASVDLSHDQSGDSLNSDEGDISWMEEQLSYFCDKCQKWIPASQLREQLSYLKGDNFFRFTCADCSADGKEQSERLKLTWQQVVMLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPVYFRSGAQEFGEPGWWKLVHNRPPTMRPEGEKLSASTLKVKASKPTLDPIITVEGLRKRASRNPVESAMELKEKRSRTQEAKDIRRAQKEAAGLLDRSTSSTPVKFISRGRRPDMILEKGEVIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDELEGDGVIDPGMEYIPPPAGSASGLMGSRKKVRAAEQIKQEVDSEEEKPDRMDGDSEDTDSNTSLHTRAREKRKPPLEKDTKPKGPRYTPVSIYEEKLLLKRLEACPGAVAMTPEARRLKRKLIVRQAKRDRGLPLFDLDEVVNAALLLVDGIYGAKDGGASRLPAGQATYRTTCQDFRILDRYQTALPARKGFRHQTTRFLYRLVGSEDLAVDQSIVSPYTSRILKPYIRRDYETKPPKLQLLSQIRSHLHKSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGIDLSECLQYPDFSVVVLYKKVIVAFGFMVPDVKYNEAYISFLLVHPEWRRAGIATFMIYHLIQTCMGKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR", "length": 779 }, "evidence": [ { "id": "F1SBH7", "url": "https://omabrowser.org/oma/group/F1SBH7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BE91-1", "protein_name": "Cysteine-rich protein 2-binding protein", "gene_name": "KAT14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGSIHLSGLISRHDDEATRTSTSEGLEEGEVEGETLLIVESEDQASVDLSHDHSGDSLNSDEGDVSWMEEQLSYFCDKCQKWIPASQLREQLSYLKGDNFFRFTCSDCSEDGKEQYERLKLTWQQVVVLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMYFRSGAQEFGEPGWWKLVHNRPPTLKPEGEKLSASALKVRASKPTLDPIITVEGLRKRASRNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFADRSSSSTPVKFISRGRRPDVILEKGEVIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVPPPAGTAASGTGLGGRKKVRAPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQMRAREKRKPVLEKDRKPKGPKFTPVSIYEEKLLLRRLEACPGAVAMTPEARRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKDGGVSRLPAGQATYRTTCQDFRILDRYQTALPSRKGFRHQSTKFLYRLVGSEDTAVDQSIVSPYTSRILKPYIRRDYETKPPKLQLLSQIRSHLHRGDPHWMPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGVDLSECLQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPDWRRAGIATFMIYHLIQTCMGKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR", "length": 781 }, "evidence": [ { "id": "F1SBH7", "url": "https://omabrowser.org/oma/group/F1SBH7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q1LXR5-1", "protein_name": "Cysteine-rich protein 2-binding protein", "gene_name": "kat14", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDSGDQRGLTVQDEETMCTSASEGLEEGEVEGETLLIVESEDQASVDLSHDQSGDSLNSDIGEDGEGSWNEDMSFYCDKCHKWIPAVQLRGEQPSYLKGDNFFKFICSDCAEDGKESFERMRLTWQQVVMLAMYNLSLEGTGRQGYFRWKEDICAFISRHWTFLLGSRKKTSTWWSTVAGCLSVGSPTFFRSGAQEFGEPGWWKLVQNRPPTLRPEGDKSSAASVKAKAVSKPSLDPIITVEGLRKRGSRNPVENAMQLKEKRSRTQEAKEIRRAQKEAAGFLDRSASSTPVKLGNRARRPEPYLEKGEVIDFSSLSSSDRTPLTSPSPSPSPDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDEELDAEGVIDPGMEYIPPPSMPLATGTIMVRKKLRPAELIKQELESEDEERGRDVEEDEGQDDGRRGRVLERRKGLQDKGEGCVSLPAPRHTFISLYEERMLLHKLEACPQALAVTPQAKRLHRKLLVRQAKRERGLPLLDVDQAVSATLSLVGGVYGAQGGLARHRTSGEEKYRTTSQDLRILDRFQSTVSVRKGFYQHTVSFWHRLMGSDACVDQTIKSPYTSRVLKPFIRRDYESRPLKLRLLSEIRAHHHRNDPNWVAEPDAPIDYCYVRPNHIPSVNSMCQDIFWPGIDLSECLQYPDFSVVVLYKKVVIGFGFMVPDVKYNEAYISFLLVHPEWRRAGIATFMIYHLIQTCMGKDVTLHVSASNSAMLLYQKFGFKTEEYILDFYDKYYPVDSKECRHAFLLRLRR", "length": 782 }, "evidence": [ { "id": "F1SBH7", "url": "https://omabrowser.org/oma/group/F1SBH7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8CID0-1", "protein_name": "Cysteine-rich protein 2-binding protein", "gene_name": "Kat14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSIHLSGLLSRHDDDATRTSTSEGLEEGEVEGETLLIVESEDQASVDLSHDQSGDSLNSDEGDVSWMEEQLSYFCDKCQKWIPASQLREQLSYLKGDNFFRFTCCDCSADGKEQYERLKLTWQQVVMLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPVYFRSGAQEFGEPGWWKLVHNRPPTMRPEGEKLAASTLKVKASKPTLDPIITVEGLRKRASRNPVESAMELKEKRSRTQEAKDIRRAQKEAAGLLDRSTSSTPVKFISRGRRPDLILEKGEVIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDELEGDGVIDPGMEYIPPPAGSASGLLGSRKKVRAPEQIKQEVDSEEEKPDRMDGDSEDTDSNISLHTRAREKRKPPLEKDMKPKGPRYTPVSIYEEKLLLKRLEACPGAVAMTPEARRLKRKLIVRQAKRDRGLPLFDLDEVVNAALLLVDGIYGAKDGGASRLAAGQATYRTTCQDFRILDRYQTALPARKGFRHQTTRFLYRLVGSEDLAVDQSIISPYTSRILKPYIRRDYETKPPKLQLLSQIRSHLHRSDPHWTPGPDAPLDYCYVRPNHIPTINSMCQEFFWPGIDLSECLQYPDFSVVVLYKKVIVAFGFMVPDVKYNEAYISFLLVHPEWRRAGIATFMIYHLIQTCMGKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR", "length": 779 }, "evidence": [ { "id": "F1SBH7", "url": "https://omabrowser.org/oma/group/F1SBH7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H8E8-1", "protein_name": "Cysteine-rich protein 2-binding protein", "gene_name": "KAT14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDSSIHLSSLISRHDDEATRTSTSEGLEEGEVEGETLLIVESEDQASVDLSHDQSGDSLNSDEGDVSWMEEQLSYFCDKCQKWIPASQLREQLSYLKGDNFFRFTCSDCSADGKEQYERLKLTWQQVVMLAMYNLSLEGSGRQGYFRWKEDICAFIEKHWTFLLGNRKKTSTWWSTVAGCLSVGSPMYFRSGAQEFGEPGWWKLVHNKPPTMKPEGEKLSASTLKIKAASKPTLDPIITVEGLRKRASRNPVESAMELKEKRSRTQEAKDIRRAQKEAAGFLDRSTSSTPVKFISRGRRPDVILEKGEVIDFSSLSSSDRTPLTSPSPSPSLDFSAPGTPASHSATPSLLSEADLIPDVMPPQALFHDDDEMEGDGVIDPGMEYVPPPAGSVASGPVVGVRKKVRGPEQIKQEVESEEEKPDRMDIDSEDTDSNTSLQTRAREKRKPQLEKDTKPKEPRYTPVSIYEEKLLLKRLEACPGAVAMTPEARRLKRKLIVRQAKRDRGLPLFDLDQVVNAALLLVDGIYGAKEGGISRLPAGQATYRTTCQDFRILDRYQTSLPSRKGFRHQTTKFLYRLVGSEDMAVDQSIVSPYTSRILKPYIRRDYETKPPKLQLLSQIRSHLHRSDPHWTPEPDAPLDYCYVRPNHIPTINSMCQEFFWPGIDLSECLQYPDFSVVVLYKKVIIAFGFMVPDVKYNEAYISFLFVHPEWRRAGIATFMIYHLIQTCMGKDVTLHVSASNPAMLLYQKFGFKTEEYVLDFYDKYYPLESTECKHAFFLRLRR", "length": 782 }, "evidence": [ { "id": "F1SBH7", "url": "https://omabrowser.org/oma/group/F1SBH7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VJ73-1", "protein_name": "2.3.1.-", "gene_name": "Atac2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNRPSNWDDPQGPCRYCESPVEDDNYLECQECRRMVHIKCLPHACTPGDLLGDVFFEFTCVKCVLDKAKESVIPSDLEPIKEVIVRQRIPWLLVLTLTLYNLSIKQKGLGHHGFFHWRTHIISFVDKNWNYIFGPNVRRRKQWTGSVSGALSHNSPEYFQSGLDVFQENGWWKLAKPFQTPRSVLKEYEKKQQLRLQMRIEKRLPAADETSCSSEISVADHAQDNPPLIKAEAEKPSSTEGCARTIPYMGRLPKIQTQPSPLSQETLPGPPILQENIAPPSQKEEEPQNQPMSMVQAGLMDFLAESLESDDFTMFGNLPGIMPPPLIGAGKNDFFMTEPLLHAPLNNEGLFDMDTNFAIPNTADETKPISTEEPAAESSEEQKEGEVEDEKPEEDESPDYQPRIVQVTNYQAQEANESIKEEPLEEIMQDDDVTTNSKSSILEPCKPSGFVRQPRRNWPWLQEAQDPDDMAIPSENLKLINAYEEQKLYQRLDRIFALEHQCHISIPAYVRRLYRKLSLRKWKRDHNRHIFNLDEHIDPLGRARLKMLGHQKAEILDRYQLLAHSRQDARSSFHARLAGCTQYELFESPYSQRVLHPFIFRSETMAPPWLKLMCELQHRVNGSHPTRSTIDFCFVRPQHIPAVNALLQSTFWPNIDVSECLSYPDYSVVALYKKLVIGCGFLVPDVGYNEAYISFMAVRPCWQRSGIASFMLYHLIQTCMSKDITLHVSATNAAVMLYQKFGFKMEEIILDFYDKYLPLDSKQSRNAFFLRLQR", "length": 774 }, "evidence": [ { "id": "F1SBH7", "url": "https://omabrowser.org/oma/group/F1SBH7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ], "pmid": "" }, { "name": "ATAC complex", "id": "GO:0140672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140672", "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone acetyltransferase activity", "id": "GO:0004402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004402", "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ], "pmid": "" }, { "name": "regulation of embryonic development", "id": "GO:0045995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045995", "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ], "pmid": "" }, { "name": "regulation of cell division", "id": "GO:0051302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051302", "evidence": [ { "database": "UniProtKB", "id": "F1SBH7", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBH7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 781, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBH7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBH7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBH7" }, { "id": "PS51186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-acetyltransferase", "eco_id": "ECO_0000259", "start_pos": 637, "end_pos": 781, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 338, 345 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 433, "end_pos": 435 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBI0-1", "uniprot_ac": "F1SBI0", "uniprot_id": "F1SBI0_PIG", "mass": { "chemical_mass": 38690.0, "monoisotopic_mass": 38690.0 }, "refseq": {}, "gene_names": [ { "name": "MGME1", "type": "recommended", "evidence": [ { "id": "F1SBI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI0" } ] } ], "protein_names": [ { "name": "Mitochondrial genome maintenance exonuclease 1", "type": "recommended", "evidence": [ { "id": "F1SBI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI0/entry#names_and_taxonomy" } ] }, { "name": "3.1.-.-", "type": "synonym", "evidence": [ { "id": "F1SBI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance. Has preference for 5'-3' exonuclease activity but is also capable of endoduclease activity on linear substrates. Necessary for maintenance of proper 7S DNA levels. Probably involved in mitochondrial DNA (mtDNA) repair, possibly via the processing of displaced DNA containing Okazaki fragments during RNA-primed DNA synthesis on the lagging strand or via processing of DNA flaps during long-patch base excision repair.", "evidence": [ { "database": "UniProtKB", "id": "F1SBI0", "url": "https://www.uniprot.org/uniprotkb/F1SBI0#function" }, { "database": "HAMAP", "id": "MF_03030", "url": "https://hamap.expasy.org/signature/MF_03030" }, { "database": "UniProtKB", "id": "ARBA00093440", "url": "https://www.uniprot.org/uniprotkb/ARBA00093440#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBI0", "url": "https://www.uniprot.org/uniprotkb/F1SBI0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MGME1", "url": "https://www.uniprot.org/uniprotkb/F1SBI0", "locus": { "chromosome": "17", "start_pos": 26395192, "end_pos": 26369875, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007089", "url": "https://www.ensembl.org/id/ENSSSCG00000007089" } ] } } ], "crossref": [ { "id": "F1SBI0", "url": "https://alphafold.ebi.ac.uk/entry/F1SBI0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007089", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007089", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31340", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31340", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31340:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31340:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F1SBI0", "url": "https://www.uniprot.org/uniprotkb/F1SBI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBI0-1", "url": "https://www.uniprot.org/uniprotkb/F1SBI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKAFQTICRQLKSSKGFSVEPASHVVFSTSSYLCGRKKKVNPYEEVDQEKYSDLVKSVLSFRGHAQTPESLFKEDALLYGPVSKCKASKQEEEAGVPQNWFPLFNPEKSVKPTATSDPTIPLKIPLQRNMIPSVTRVLQQTMTSEQISCLERWKQRMILQLGEDGFAEYTSNMFLQGKQFHEALESILSPQGNLKERDKNLDSGYVQSVQHVLKDVSGVRAVESAVQHETLNYIGLLDCVADYQGLCVIDWKTSEKPKPYIRNTFDNPLQVVAYVGAINHDSNYSFQVQCGLIVVAYKDGSPAHPHFMNAELCSRYWAKWLLRLEEYTKKEKNQDIQKPH", "length": 340, "header": "tr|F1SBI0-1|F1SBI0_PIG Isoform 1 of Mitochondrial genome maintenance exonuclease 1 OS=Sus scrofa OX=9823 GN=MGME1 PE=3 SV=4 CANONICAL=F1SBI0-1" }, "isoforms": [ { "isoform_ac": "F1SBI0-1", "url": "https://www.uniprot.org/uniprotkb/F1SBI0/entry#F1SBI0-1", "sequence": { "sequence": "MKAFQTICRQLKSSKGFSVEPASHVVFSTSSYLCGRKKKVNPYEEVDQEKYSDLVKSVLSFRGHAQTPESLFKEDALLYGPVSKCKASKQEEEAGVPQNWFPLFNPEKSVKPTATSDPTIPLKIPLQRNMIPSVTRVLQQTMTSEQISCLERWKQRMILQLGEDGFAEYTSNMFLQGKQFHEALESILSPQGNLKERDKNLDSGYVQSVQHVLKDVSGVRAVESAVQHETLNYIGLLDCVADYQGLCVIDWKTSEKPKPYIRNTFDNPLQVVAYVGAINHDSNYSFQVQCGLIVVAYKDGSPAHPHFMNAELCSRYWAKWLLRLEEYTKKEKNQDIQKPH", "length": 340, "header": "tr|F1SBI0-1|F1SBI0_PIG Isoform 1 of Mitochondrial genome maintenance exonuclease 1 OS=Sus scrofa OX=9823 GN=MGME1 PE=3 SV=4 CANONICAL=F1SBI0-1" }, "locus": { "chromosome": "17", "start_pos": 26394188, "end_pos": 26383761, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007761.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007761.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007552.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007552.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBI0", "url": "https://www.uniprot.org/uniprotkb/F1SBI0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SBI0", "url": "https://www.uniprot.org/uniprotkb/F1SBI0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial DNA replication", "id": "GO:0006264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006264", "evidence": [ { "database": "UniProtKB", "id": "F1SBI0", "url": "https://www.uniprot.org/uniprotkb/F1SBI0" } ], "pmid": "" }, { "name": "mitochondrial DNA repair", "id": "GO:0043504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043504", "evidence": [ { "database": "UniProtKB", "id": "F1SBI0", "url": "https://www.uniprot.org/uniprotkb/F1SBI0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "single-stranded DNA 5'-3' DNA exonuclease activity", "id": "GO:0045145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045145", "evidence": [ { "database": "UniProtKB", "id": "F1SBI0", "url": "https://www.uniprot.org/uniprotkb/F1SBI0" } ], "pmid": "" }, { "name": "single-stranded DNA exodeoxyribonuclease activity", "id": "GO:0008297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008297", "evidence": [ { "database": "UniProtKB", "id": "F1SBI0", "url": "https://www.uniprot.org/uniprotkb/F1SBI0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBI0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 340, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBI0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBI0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 283, "end_pos": 285 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBI4-1", "uniprot_ac": "F1SBI4", "uniprot_id": "F1SBI4_PIG", "mass": { "chemical_mass": 81718.0, "monoisotopic_mass": 81718.0 }, "refseq": {}, "gene_names": [ { "name": "BFSP1", "type": "recommended", "evidence": [ { "id": "F1SBI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ] } ], "protein_names": [ { "name": "Filensin", "type": "recommended", "evidence": [ { "id": "F1SBI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI4/entry#names_and_taxonomy" } ] }, { "name": "Beaded filament structural protein 1", "type": "synonym", "evidence": [ { "id": "F1SBI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Required for the correct formation of lens intermediate filaments as part of a complex composed of BFSP1, BFSP2 and CRYAA. Involved in altering the calcium regulation of MIP water permeability.", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4#function" }, { "database": "UniProtKB", "id": "ARBA00056753", "url": "https://www.uniprot.org/uniprotkb/ARBA00056753#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BFSP1", "url": "https://www.uniprot.org/uniprotkb/F1SBI4", "locus": { "chromosome": "17", "start_pos": 25933900, "end_pos": 25967005, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007084", "url": "https://www.ensembl.org/id/ENSSSCG00000007084" } ] } } ], "crossref": [ { "id": "F1SBI4", "url": "https://alphafold.ebi.ac.uk/entry/F1SBI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007084", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007084", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042358", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042358", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14069", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14069", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14069:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14069:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYRRSYIFQTRKEQYERAEEPPRPAESDSLTEGWAGAPSLAALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQRLGELTGPEDALARHVEGNRQRARDLAAERTRLERQGAEAQRALDEFRSKYENECECQLLLKEMLERLNKEADEALLRNLRLQIEAQFLQDDISAAKDRYKKNLLEIQTYVTILQQIIQTTPQAAAITSGMREEKLLTEREAATLQNQLEDSREVLCLLQAQKVELQAQTAALEQAIKDAHLCYDDEIQLYNEQIDTLRKEIEESERSLERSSYDCRQLLVAQQTLRNELDRYHRIIENEGNRLSSAFIETPITLYTASHGASLSPRHGGKDLARVVQDITTAKPRQKGLPKNVPRKKEIIAKDKADESLEEAPLRGLEDTKPGRVVFKEEEESKLESGDEGVSLLTPVGAPEDVPDGGKISKAFEKLGKMVKERMKGPKEPEPPPELYTKGRYVLVSGDANFVDPGFCSFSVPAKGGVVVSKVDDSLHPDLGGPPPEKEDALQDGQGPPPGKEDALQDGQGPPPGKEDALQDGQGPPPEKEDALQDGQGPPPGKEDALQDGQGPPPEKEDALQDGQGPPPGKEDALRDGQGPPPGKEDHTADKGVEINEQKGPGKKQDVQKEDEGARRPCPMVMPAPEGPSTPQSQGPRVTYGGPLGPGARSSSLPARSPPRTLAYEKVEVMESIEKFSTENIQTYEETAVIVETMIEKTKANRKKVGEKGSGDA", "length": 741, "header": "tr|F1SBI4-1|F1SBI4_PIG Isoform 1 of Filensin OS=Sus scrofa OX=9823 GN=BFSP1 PE=4 SV=5 CANONICAL=F1SBI4-1" }, "isoforms": [ { "isoform_ac": "F1SBI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBI4/entry#F1SBI4-1", "sequence": { "sequence": "MYRRSYIFQTRKEQYERAEEPPRPAESDSLTEGWAGAPSLAALQGLGERVAAHVQRARALEQRHAVLRRQLDAFQRLGELTGPEDALARHVEGNRQRARDLAAERTRLERQGAEAQRALDEFRSKYENECECQLLLKEMLERLNKEADEALLRNLRLQIEAQFLQDDISAAKDRYKKNLLEIQTYVTILQQIIQTTPQAAAITSGMREEKLLTEREAATLQNQLEDSREVLCLLQAQKVELQAQTAALEQAIKDAHLCYDDEIQLYNEQIDTLRKEIEESERSLERSSYDCRQLLVAQQTLRNELDRYHRIIENEGNRLSSAFIETPITLYTASHGASLSPRHGGKDLARVVQDITTAKPRQKGLPKNVPRKKEIIAKDKADESLEEAPLRGLEDTKPGRVVFKEEEESKLESGDEGVSLLTPVGAPEDVPDGGKISKAFEKLGKMVKERMKGPKEPEPPPELYTKGRYVLVSGDANFVDPGFCSFSVPAKGGVVVSKVDDSLHPDLGGPPPEKEDALQDGQGPPPGKEDALQDGQGPPPGKEDALQDGQGPPPEKEDALQDGQGPPPGKEDALQDGQGPPPEKEDALQDGQGPPPGKEDALRDGQGPPPGKEDHTADKGVEINEQKGPGKKQDVQKEDEGARRPCPMVMPAPEGPSTPQSQGPRVTYGGPLGPGARSSSLPARSPPRTLAYEKVEVMESIEKFSTENIQTYEETAVIVETMIEKTKANRKKVGEKGSGDA", "length": 741, "header": "tr|F1SBI4-1|F1SBI4_PIG Isoform 1 of Filensin OS=Sus scrofa OX=9823 GN=BFSP1 PE=4 SV=5 CANONICAL=F1SBI4-1" }, "locus": { "chromosome": "17", "start_pos": 25966806, "end_pos": 25933903, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007756.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007756.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007547.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007547.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "pmid": "" }, { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "pmid": "" }, { "name": "lens fiber cell development", "id": "GO:0070307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070307", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of eye lens", "id": "GO:0005212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005212", "evidence": [ { "database": "UniProtKB", "id": "F1SBI4", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBI4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 741, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBI4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBI4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBI4" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 319, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBJ7-1", "uniprot_ac": "F1SBJ7", "uniprot_id": "F1SBJ7_PIG", "mass": { "chemical_mass": 61511.0, "monoisotopic_mass": 61511.0 }, "refseq": { "ac": "XP_003134305", "name": "serine palmitoyltransferase 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134305" }, "gene_names": [ { "name": "SPTLC3", "type": "recommended", "evidence": [ { "id": "F1SBJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" } ] }, { "name": "SPTLC3", "type": "synonym", "evidence": [ { "id": "XP_003134305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134305" } ] } ], "protein_names": [ { "name": "serine C-palmitoyltransferase", "type": "recommended", "evidence": [ { "id": "F1SBJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7/entry#names_and_taxonomy" } ] }, { "name": "2.3.1.50", "type": "synonym", "evidence": [ { "id": "F1SBJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7/entry#names_and_taxonomy" } ] }, { "name": "serine palmitoyltransferase 3", "type": "synonym", "evidence": [ { "id": "XP_003134305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134305" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBJ7", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPTLC3", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7", "locus": { "chromosome": "17", "start_pos": 21903264, "end_pos": 21769484, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007072", "url": "https://www.ensembl.org/id/ENSSSCG00000007072" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007072", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007072", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06454", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06454", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519280", "url": "https://www.ncbi.nlm.nih.gov/gene/100519280", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015424", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015424", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519280", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519280", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MFGSNAY", "url": "https://omabrowser.org/oma/group/MFGSNAY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBJ7", "url": "https://www.orthodb.org/?gene=F1SBJ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13693", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13693", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13693:SF56", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13693:SF56", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00155", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00155", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660661", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003134305", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134305", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBJ7", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBJ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADPGGGAVCNGSVDIQSDCPNENCRRNGIVKEAQQNGNSNFYKPIVESFEEAPLHAMVFTYLGYGIVTLFGYLRDFLRNWGIEKCNAAVEREEQKDFVPLYQNFENFYTRNLYMRIRDNWNRPICSNPGALFDVMERVSDDYNWTFRSTGRIIKDVINMGSYNFLGLAAKYDESMRTVKDVLETYGIGVGSTRQEMGTLDKHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNVQSLEKLLRDAIIYGQPRTRRAWKKILILVEGIYSMEGSIVYLPQIVALKKKYKAYLYIDEAHSIGSLGPTGRGVVEFFGMDPRDVDVCMGTFTKSFGASGGYLAGRKDLVDYLRAHSHSAAYATSMSPPVAEQIIRSMKLIMGLDGTTQGLQRVQQLAKNTRYFRQRLSQLGFIIYGNEASPVVPLLLYMPAKVAAFARHLLNRYKIGVVVVGFPATPLAEARARFCISATHTREMLDKVLEALDEIGDLLHVKYSRHRKSARPELYDESSFELED", "length": 548, "header": "tr|F1SBJ7-1|F1SBJ7_PIG Isoform 1 of serine C-palmitoyltransferase OS=Sus scrofa OX=9823 GN=SPTLC3 PE=3 SV=2 CANONICAL=F1SBJ7-1" }, "isoforms": [ { "isoform_ac": "F1SBJ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7/entry#F1SBJ7-1", "sequence": { "sequence": "MADPGGGAVCNGSVDIQSDCPNENCRRNGIVKEAQQNGNSNFYKPIVESFEEAPLHAMVFTYLGYGIVTLFGYLRDFLRNWGIEKCNAAVEREEQKDFVPLYQNFENFYTRNLYMRIRDNWNRPICSNPGALFDVMERVSDDYNWTFRSTGRIIKDVINMGSYNFLGLAAKYDESMRTVKDVLETYGIGVGSTRQEMGTLDKHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNVQSLEKLLRDAIIYGQPRTRRAWKKILILVEGIYSMEGSIVYLPQIVALKKKYKAYLYIDEAHSIGSLGPTGRGVVEFFGMDPRDVDVCMGTFTKSFGASGGYLAGRKDLVDYLRAHSHSAAYATSMSPPVAEQIIRSMKLIMGLDGTTQGLQRVQQLAKNTRYFRQRLSQLGFIIYGNEASPVVPLLLYMPAKVAAFARHLLNRYKIGVVVVGFPATPLAEARARFCISATHTREMLDKVLEALDEIGDLLHVKYSRHRKSARPELYDESSFELED", "length": 548, "header": "tr|F1SBJ7-1|F1SBJ7_PIG Isoform 1 of serine C-palmitoyltransferase OS=Sus scrofa OX=9823 GN=SPTLC3 PE=3 SV=2 CANONICAL=F1SBJ7-1" }, "locus": { "chromosome": "17", "start_pos": 21899697, "end_pos": 21769782, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007743.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007743.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007534.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007534.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBJ7", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519280", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519280", "resource": "KEGG Pathway" }, { "id": "R-SSC-1660661", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "resource": "Reactome", "description": "Sphingolipid de novo biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QER4-1", "protein_name": "serine C-palmitoyltransferase", "gene_name": "Sptlc3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASLRGSVVTNGTLHNPKTQHSKWQSTDCVKNGIAKEAQQNRKPRFFDKPIFDSYPEPPLYVLVFTYMAYVIGTLFGYLRDFMRSLGIEKCNAAVEREEQKDFVPLYQDFENFYKRNLYMRVRDLWNQTVCSAPGPYFDMMEKVSDDRNWTFRHTGRVIKNVVNMGSYNYLGLAVKYDESMKSVKDTLEKYGVGVASTRHEMGTLDKHKELEDLMAKFLNVEAVMTFGMGFATNSMNIPILVGKGCLILSDEFNHTSIILGARLSGATIRPFKHNNVQSLEKLLRESIINGQPRTGRAWKKILIVVEGIYSMEGSIVNLPQIVALKKKYKAYLYIDEAHSIGATGSNCQGVRDLFGLAPEDVDVYMGTFTKSFAASGGYIAGKKELVDYVRIHSHSAAYGTSMSPVVAAQIIRSLRLITGEDGNLGGRQRIQQLTKNIKYFRQRLTEMGFIIYGDDYSPIIPVLLYMPAKISVFGRYLLKKKIGVVLVGFPATSLAEGRARFCLSSAHTRETLDEVLEVVDKLGDMLNVKYFPCKKSGRPALYNEKSFDNEASFDEVNMQPEA", "length": 563 }, "evidence": [ { "id": "F1SBJ7", "url": "https://omabrowser.org/oma/group/F1SBJ7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0Z5D6-1", "protein_name": "serine C-palmitoyltransferase", "gene_name": "SPTLC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MELSAKKTFIEHFEQAPMYVAVLTFVGFGVGTVFGYLRDFMRAWGLEKRNVAQEREQQKTCWSNLHTIHQALYDFVPLYQDFENFYTRNLYVRIRDNWNRPICSVPGPQFDLMERVTDDYNWTFRFTGRTIKNVINMGSYNYLGFAETDPNALKTVAKELQRYGTGICSTRQEMGTLDKHVELENLVAKFLGVEDAMVFGMGFATNSMNIPALVGKGCLILSDELNHTSLVLGARLSGATIRIFKHNNMQSLEKLLRDAIVYGQPRSRRAWRKIIILVEGIYSMEGSIVRLPEIVSLKNKYKAYLYLDEAHSIGAVGATGRGVVEYFGMNPNDVDVLMGTFTKSFGAAGGYIAGKKGLVDFLRTHSHSAVYATSMCPPVAEQIIRAMKCLMGLDGTTQGLQRVRQLGKNTRYFRRRLHEMGFIIYGNDDSPVVPLLLYMPGKIGAFARRMLEKNIGVVVVGFPATPITESRARFCVSAAHTREMLDTVLNALDELGDFLHLKYSRYSKSSHPELYEETRFEFED", "length": 524 }, "evidence": [ { "id": "F1SBJ7", "url": "https://omabrowser.org/oma/group/F1SBJ7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9NUV7-1", "protein_name": "Serine palmitoyltransferase 3", "gene_name": "SPTLC3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANPGGGAVCNGKLHNHKKQSNGSQSRNCTKNGIVKEAQQNGKPHFYDKLIVESFEEAPLHVMVFTYMGYGIGTLFGYLRDFLRNWGIEKCNAAVERKEQKDFVPLYQDFENFYTRNLYMRIRDNWNRPICSAPGPLFDLMERVSDDYNWTFRFTGRVIKDVINMGSYNFLGLAAKYDESMRTIKDVLEVYGTGVASTRHEMGTLDKHKELEDLVAKFLNVEAAMVFGMGFATNSMNIPALVGKGCLILSDELNHTSLVLGARLSGATIRIFKHNNTQSLEKLLRDAVIYGQPRTRRAWKKILILVEGVYSMEGSIVHLPQIIALKKKYKAYLYIDEAHSIGAVGPTGRGVTEFFGLDPHEVDVLMGTFTKSFGASGGYIAGRKDLVDYLRVHSHSAVYASSMSPPIAEQIIRSLKLIMGLDGTTQGLQRVQQLAKNTRYFRQRLQEMGFIIYGNENASVVPLLLYMPGKVAAFARHMLEKKIGVVVVGFPATPLAEARARFCVSAAHTREMLDTVLEALDEMGDLLQLKYSRHKKSARPELYDETSFELED", "length": 552 }, "evidence": [ { "id": "F1SBJ7", "url": "https://omabrowser.org/oma/group/F1SBJ7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine C-palmitoyltransferase activity", "id": "GO:0004758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004758", "evidence": [ { "database": "UniProtKB", "id": "F1SBJ7", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" } ], "pmid": "" }, { "name": "pyridoxal phosphate binding", "id": "GO:0030170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030170", "evidence": [ { "database": "UniProtKB", "id": "F1SBJ7", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "serine palmitoyltransferase complex", "id": "GO:0017059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017059", "evidence": [ { "database": "UniProtKB", "id": "F1SBJ7", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SBJ7", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ceramide biosynthetic process", "id": "GO:0046513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046513", "evidence": [ { "database": "UniProtKB", "id": "F1SBJ7", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" } ], "pmid": "" }, { "name": "sphingosine biosynthetic process", "id": "GO:0046512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046512", "evidence": [ { "database": "UniProtKB", "id": "F1SBJ7", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-428127", "name": "SPTLC complexes transfer acyl-CoA onto serine", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-428127", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-428127" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBJ7" }, { "id": "PF00155", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00155" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminotransferase class I/classII large", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 516, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 }, { "start_pos": 144, "end_pos": 146 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBK3-1", "uniprot_ac": "F1SBK3", "uniprot_id": "F1SBK3_PIG", "mass": { "chemical_mass": 11465.0, "monoisotopic_mass": 11465.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Large ribosomal subunit protein P1", "type": "recommended", "evidence": [ { "id": "F1SBK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBK3/entry#names_and_taxonomy" } ] }, { "name": "60S acidic ribosomal protein P1", "type": "synonym", "evidence": [ { "id": "F1SBK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBK3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays an important role in the elongation step of protein synthesis.", "evidence": [ { "database": "UniProtKB", "id": "F1SBK3", "url": "https://www.uniprot.org/uniprotkb/F1SBK3#function" }, { "database": "UniProtKB", "id": "ARBA00003362", "url": "https://www.uniprot.org/uniprotkb/ARBA00003362#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBK3", "url": "https://www.uniprot.org/uniprotkb/F1SBK3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SBK3", "locus": {} } ], "crossref": [ { "id": "F1SBK3", "url": "https://alphafold.ebi.ac.uk/entry/F1SBK3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007065", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007065", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05831", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05831", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR038716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HEPFWPG", "url": "https://omabrowser.org/oma/group/HEPFWPG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45696", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45696", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45696:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45696:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00428", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00428", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SBK3", "url": "https://www.uniprot.org/uniprotkb/F1SBK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBK3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASISELSCIYSALILHDDEVMVTGDKIKSLIHTASVNHEPFWPGLFAKALASVNIRSLICDVGAWWTCPSSRSCPIQLLPQLRRKLKQRKKSNDDTGFGFFG", "length": 103, "header": "tr|F1SBK3-1|F1SBK3_PIG Isoform 1 of Large ribosomal subunit protein P1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1SBK3-1" }, "isoforms": [ { "isoform_ac": "F1SBK3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBK3/entry#F1SBK3-1", "sequence": { "sequence": "MASISELSCIYSALILHDDEVMVTGDKIKSLIHTASVNHEPFWPGLFAKALASVNIRSLICDVGAWWTCPSSRSCPIQLLPQLRRKLKQRKKSNDDTGFGFFG", "length": 103, "header": "tr|F1SBK3-1|F1SBK3_PIG Isoform 1 of Large ribosomal subunit protein P1 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1SBK3-1" }, "locus": { "chromosome": "17", "start_pos": 19396297, "end_pos": 19395989, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007736.2", "url": "https://www.ensembl.org/id/ENSSSCT00000007736.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007528.1", "url": "https://www.ensembl.org/id/ENSSSCP00000007528.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBK3", "url": "https://www.uniprot.org/uniprotkb/F1SBK3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ribonucleoprotein complex binding", "id": "GO:0043021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043021", "evidence": [ { "database": "UniProtKB", "id": "F1SBK3", "url": "https://www.uniprot.org/uniprotkb/F1SBK3" } ], "pmid": "" }, { "name": "protein kinase activator activity", "id": "GO:0030295", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030295", "evidence": [ { "database": "UniProtKB", "id": "F1SBK3", "url": "https://www.uniprot.org/uniprotkb/F1SBK3" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1SBK3", "url": "https://www.uniprot.org/uniprotkb/F1SBK3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "F1SBK3", "url": "https://www.uniprot.org/uniprotkb/F1SBK3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "F1SBK3", "url": "https://www.uniprot.org/uniprotkb/F1SBK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBK3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 103, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBK3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBK3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBM2-1", "uniprot_ac": "F1SBM2", "uniprot_id": "F1SBM2_PIG", "mass": { "chemical_mass": 78929.0, "monoisotopic_mass": 78929.0 }, "refseq": {}, "gene_names": [ { "name": "TRMT6", "type": "recommended", "evidence": [ { "id": "F1SBM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBM2" } ] } ], "protein_names": [ { "name": "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6", "type": "recommended", "evidence": [ { "id": "F1SBM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBM2/entry#names_and_taxonomy" } ] }, { "name": "tRNA(m1A58)-methyltransferase subunit TRM6", "type": "synonym", "evidence": [ { "id": "F1SBM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBM2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBM2", "url": "https://www.uniprot.org/uniprotkb/F1SBM2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRMT6", "url": "https://www.uniprot.org/uniprotkb/F1SBM2", "locus": { "chromosome": "17", "start_pos": 14777683, "end_pos": 14965130, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007046", "url": "https://www.ensembl.org/id/ENSSSCG00000007046" } ] } } ], "crossref": [ { "id": "F1SBM2", "url": "https://alphafold.ebi.ac.uk/entry/F1SBM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007046", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007046", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR017423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PHGLFEV", "url": "https://omabrowser.org/oma/group/PHGLFEV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12945", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12945", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12945:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12945:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04189", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04189", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SBM2", "url": "https://www.uniprot.org/uniprotkb/F1SBM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SBM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRMIQRKNHDVSAVKKTSNEITPVQDWSKKPWHASNVCAKESKSIRPKLETWNFQPNSNRTSKIYLKEELQQDVQRFKNEVEKEKKQHRSNMMAISENRRGADDDSGLMQQRERGKSNHQWFPTVENEDSDSGSSGMHMKEVWKNEREKWSSEEPVVPPIFEKADSPLTVDSLHVNDGRRLSERDQDDGRDRLSVMEGSDEQPGPQPLHPGDHCIRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGHNYGTTFEVTNGGILQPKKKKEEPTSETKEAGTDNRNIIDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAMITIVKPSTRILSVMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAATACFGFPKSFLSGLYEFPLNKVDSLLNGTFSAEMLSSEPKDSTSAEESNGTLEEKQPSEQENEDSVAETQESSHPEEQETMEMISQDPEYKEPKERGSKKDYIQEKQRRQEEQKKRHLEAAALLSEKNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVAMDNLKADTSLKSSTSTLESYKTEEPAAKKRKCPESDA", "length": 693, "header": "tr|F1SBM2-1|F1SBM2_PIG Isoform 1 of tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Sus scrofa OX=9823 GN=TRMT6 PE=1 SV=2 CANONICAL=F1SBM2-1" }, "isoforms": [ { "isoform_ac": "F1SBM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SBM2/entry#F1SBM2-1", "sequence": { "sequence": "MNRMIQRKNHDVSAVKKTSNEITPVQDWSKKPWHASNVCAKESKSIRPKLETWNFQPNSNRTSKIYLKEELQQDVQRFKNEVEKEKKQHRSNMMAISENRRGADDDSGLMQQRERGKSNHQWFPTVENEDSDSGSSGMHMKEVWKNEREKWSSEEPVVPPIFEKADSPLTVDSLHVNDGRRLSERDQDDGRDRLSVMEGSDEQPGPQPLHPGDHCIRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGHNYGTTFEVTNGGILQPKKKKEEPTSETKEAGTDNRNIIDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAMITIVKPSTRILSVMYYAREPGKINHMRYDTLAQMLTLGNIRAGNKMIVMETCAGLVLGAMMERMGGFGSIIQLYPGGGPVRAATACFGFPKSFLSGLYEFPLNKVDSLLNGTFSAEMLSSEPKDSTSAEESNGTLEEKQPSEQENEDSVAETQESSHPEEQETMEMISQDPEYKEPKERGSKKDYIQEKQRRQEEQKKRHLEAAALLSEKNADGLIVASRFHPTPLLLSLLDFVAPSRPFVVYCQYKEPLLECYTKLRERGGVINLRLSETWLRNYQVLPDRSHPKLLMSGGGGYLLSGFTVAMDNLKADTSLKSSTSTLESYKTEEPAAKKRKCPESDA", "length": 693, "header": "tr|F1SBM2-1|F1SBM2_PIG Isoform 1 of tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Sus scrofa OX=9823 GN=TRMT6 PE=1 SV=2 CANONICAL=F1SBM2-1" }, "locus": { "chromosome": "17", "start_pos": 14965130, "end_pos": 14779243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007715.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007715.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007508.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007508.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBM2", "url": "https://www.uniprot.org/uniprotkb/F1SBM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SBM2", "url": "https://www.uniprot.org/uniprotkb/F1SBM2" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SBM2", "url": "https://www.uniprot.org/uniprotkb/F1SBM2" } ], "pmid": "" }, { "name": "tRNA (m1A) methyltransferase complex", "id": "GO:0031515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031515", "evidence": [ { "database": "UniProtKB", "id": "F1SBM2", "url": "https://www.uniprot.org/uniprotkb/F1SBM2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SBM2", "url": "https://www.uniprot.org/uniprotkb/F1SBM2" } ], "pmid": "" }, { "name": "tRNA methylation", "id": "GO:0030488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030488", "evidence": [ { "database": "UniProtKB", "id": "F1SBM2", "url": "https://www.uniprot.org/uniprotkb/F1SBM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 485, "end_pos": 487, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBM2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 693, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBM2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBM2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 327, "end_pos": 329 }, { "start_pos": 463, "end_pos": 465 }, { "start_pos": 485, "end_pos": 487 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBN3-1", "uniprot_ac": "F1SBN3", "uniprot_id": "F1SBN3_PIG", "mass": { "chemical_mass": 35507.0, "monoisotopic_mass": 35507.0 }, "refseq": { "ac": "XP_003123458", "name": "olfactory receptor 7C2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123458" }, "gene_names": [ { "name": "LOC100511440", "type": "recommended", "evidence": [ { "id": "F1SBN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBN3" } ] }, { "name": "LOC100511440", "type": "synonym", "evidence": [ { "id": "XP_003123458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123458" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SBN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBN3/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 7C2-like", "type": "synonym", "evidence": [ { "id": "XP_003123458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123458" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SBN3", "url": "https://www.uniprot.org/uniprotkb/F1SBN3#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBN3", "url": "https://www.uniprot.org/uniprotkb/F1SBN3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100511440", "url": "https://www.uniprot.org/uniprotkb/F1SBN3", "locus": {} } ], "crossref": [ { "id": "F1SBN3", "url": "https://alphafold.ebi.ac.uk/entry/F1SBN3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15234", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15234", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511440", "url": "https://www.ncbi.nlm.nih.gov/gene/100511440", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511440", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511440", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SLIMNPQ", "url": "https://omabrowser.org/oma/group/SLIMNPQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBN3", "url": "https://www.orthodb.org/?gene=F1SBN3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123458", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123458", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBN3", "url": "https://www.uniprot.org/uniprotkb/F1SBN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIRNQTRYFLLLGFTEEPDMQPLLFGLFLSMYLSTFTGNLLIILAIISDSHLHMPMYFFLSNLSFADLCFTSTTIPKMLMNIQTQSKVITYAGCLSQVFFFFVFGCLDNLILTVMAYDRFVAICHPLYYTVIMNPQVCRMLALGSWCISVTGSLLDTLTLLRLSFCMNMNIPHFFCDLPEVLKLACSDTLINNIVVYFVVVVLGIFPLSGILFSYSQIFSSILRISSSKGKHKAFSTCGSHLSVVSLFYGTSLGVYLSSAATSSSRTSLVASVMYTMITPMLNPFIYSLRNRDMKRALGRLLSRVASLSDGVVAGFS", "length": 318, "header": "tr|F1SBN3-1|F1SBN3_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100511440 PE=3 SV=2 CANONICAL=F1SBN3-1" }, "isoforms": [ { "isoform_ac": "F1SBN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN3/entry#F1SBN3-1", "sequence": { "sequence": "MEIRNQTRYFLLLGFTEEPDMQPLLFGLFLSMYLSTFTGNLLIILAIISDSHLHMPMYFFLSNLSFADLCFTSTTIPKMLMNIQTQSKVITYAGCLSQVFFFFVFGCLDNLILTVMAYDRFVAICHPLYYTVIMNPQVCRMLALGSWCISVTGSLLDTLTLLRLSFCMNMNIPHFFCDLPEVLKLACSDTLINNIVVYFVVVVLGIFPLSGILFSYSQIFSSILRISSSKGKHKAFSTCGSHLSVVSLFYGTSLGVYLSSAATSSSRTSLVASVMYTMITPMLNPFIYSLRNRDMKRALGRLLSRVASLSDGVVAGFS", "length": 318, "header": "tr|F1SBN3-1|F1SBN3_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100511440 PE=3 SV=2 CANONICAL=F1SBN3-1" }, "locus": { "chromosome": "AEMK02000630.1", "start_pos": 122860, "end_pos": 121907, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015101.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015101.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014696.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014696.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBN3", "url": "https://www.uniprot.org/uniprotkb/F1SBN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511440", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511440", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SBN3", "url": "https://www.uniprot.org/uniprotkb/F1SBN3" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SBN3", "url": "https://www.uniprot.org/uniprotkb/F1SBN3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBN3", "url": "https://www.uniprot.org/uniprotkb/F1SBN3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SBN3", "url": "https://www.uniprot.org/uniprotkb/F1SBN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBN3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBN3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBN3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBN3" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBN6-1", "uniprot_ac": "F1SBN6", "uniprot_id": "F1SBN6_PIG", "mass": { "chemical_mass": 34950.0, "monoisotopic_mass": 34950.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110258794", "type": "recommended", "evidence": [ { "id": "F1SBN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBN6" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SBN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBN6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SBN6", "url": "https://www.uniprot.org/uniprotkb/F1SBN6#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBN6", "url": "https://www.uniprot.org/uniprotkb/F1SBN6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110258794", "url": "https://www.uniprot.org/uniprotkb/F1SBN6", "locus": {} } ], "crossref": [ { "id": "F1SBN6", "url": "https://alphafold.ebi.ac.uk/entry/F1SBN6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15234", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15234", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YANCIAQ", "url": "https://omabrowser.org/oma/group/YANCIAQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SBN6", "url": "https://www.uniprot.org/uniprotkb/F1SBN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBN6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELGNDTQISEFLLLGFSEDPELQPIIFGIFLSMYLITVFGNLLIILAISSDSHLHTPMYFFLSNLSFVDICFTSTTIPKMLWNIQMQSKTITYEGCITQIYFLILFAVLDIFLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLMSWIINILNSLLQSLMMLRLSFCKNFEIPHFFCELNHMVQLACSDTFLNTIVMYFAAVLLGGGPFAGIIYSYSKIVSSIRRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAATQSAHSSSTASVMYTVITPMLNPFIYSLRNKDMKRALKAFFVKGTV", "length": 310, "header": "tr|F1SBN6-1|F1SBN6_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110258794 PE=3 SV=3 CANONICAL=F1SBN6-1" }, "isoforms": [ { "isoform_ac": "F1SBN6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBN6/entry#F1SBN6-1", "sequence": { "sequence": "MELGNDTQISEFLLLGFSEDPELQPIIFGIFLSMYLITVFGNLLIILAISSDSHLHTPMYFFLSNLSFVDICFTSTTIPKMLWNIQMQSKTITYEGCITQIYFLILFAVLDIFLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLMSWIINILNSLLQSLMMLRLSFCKNFEIPHFFCELNHMVQLACSDTFLNTIVMYFAAVLLGGGPFAGIIYSYSKIVSSIRRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAATQSAHSSSTASVMYTVITPMLNPFIYSLRNKDMKRALKAFFVKGTV", "length": 310, "header": "tr|F1SBN6-1|F1SBN6_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110258794 PE=3 SV=3 CANONICAL=F1SBN6-1" }, "locus": { "chromosome": "AEMK02000579.1", "start_pos": 5576, "end_pos": 4647, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015098.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015098.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014693.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014693.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBN6", "url": "https://www.uniprot.org/uniprotkb/F1SBN6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A061HZU1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100772840", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEEGNDTQLSEFLLLGFSENQPQIQPLIFGLFLSMYLVTVFGNLLIIMAIIVDSHLHTPMYIFLSNLSFVDICFTSTTVPQMLVNIQTQSKVILYANCIAQVYFLLLFSVLDIFLLTVMAYDRYVAICHPLHYMVIMSPRCCGLLILACWIISVLNSLLHSFLVLQLSFCEDLDIPHFYCELDQVVHHACSDTSLNDMVIYIAAMLLVVGPLSGILYSYSKIVSSIRAISSAQGKYKAFSTCASHLSVVSLFYCTLLGVYLSSAVTQNPHATAMASLMYTVVTPMLNPFIYSLRNSDIKKALKILLGRATKNRPMDLLS", "length": 319 }, "evidence": [ { "id": "F1SBN6", "url": "https://omabrowser.org/oma/group/F1SBN6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6A2C2-1", "protein_name": "Olfactory receptor", "gene_name": "Or7a35", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPGNDTQLSEFFLLGFSEKQPEIQPLIFGLFLSMYLVTVTGNLLIIMAIIVDAHLHTPMYIFLSNLSFVDICFTSITVPQMLVNIHTQSKVIIYANCITQVYFLLLFSVLDIFLLTVMAYDRYVAICHPLHYMIIMNTRRCGLLILACWIISVINSLLHTFLVLRLSFCTDLEIPHFYCELNQIVHHACSDISLNDMVIYIAALLLVVGPLSGILYSYSKIVSSICAISSVQGKYKAFSTCASHLSVVSLFYCTLLGVYLSSAVTQNAHATAMASLMYTVVTPMLNPFIYSLRNNDMKKALKIVLGRVTRNRSMDLA", "length": 318 }, "evidence": [ { "id": "F1SBN6", "url": "https://omabrowser.org/oma/group/F1SBN6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VGU6-1", "protein_name": "Olfactory receptor family 7 subfamily A member 35", "gene_name": "Or7a35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPGNDTQLSEFFLLELSENQPQIQPLIFGLFLSMYLVTVTGNLLIIMAITADSHLHTPMYIFLSNLSFVDICFTSTTVPQMLVTIHTQSKAITYANCITQVYFLLLFSVLDIFLLTVMAYDHYVAICHPLHYMIIMNTRRCGLMILACWIIGVINSLLHTFLALRLSFCTDLEIPHFYCELNQVVHHACSDISLNDMVIYIAAMLLVVGPLSGILYSYSKIVSSICAISSVQGKYKAFSTCASHLSVVSLFYCTLLGVYLSSAVTQNAQATALASLMYTVVTPMLNPFIYSLRNNDMKKALKIVLGRVTRNRLTDLPS", "length": 319 }, "evidence": [ { "id": "F1SBN6", "url": "https://omabrowser.org/oma/group/F1SBN6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SBN6", "url": "https://www.uniprot.org/uniprotkb/F1SBN6" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SBN6", "url": "https://www.uniprot.org/uniprotkb/F1SBN6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBN6", "url": "https://www.uniprot.org/uniprotkb/F1SBN6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SBN6", "url": "https://www.uniprot.org/uniprotkb/F1SBN6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBN6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 310, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBN6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBN6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBN6" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBQ3-1", "uniprot_ac": "F1SBQ3", "uniprot_id": "F1SBQ3_PIG", "mass": { "chemical_mass": 51707.0, "monoisotopic_mass": 51707.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100156854", "type": "recommended", "evidence": [ { "id": "F1SBQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3" } ] } ], "protein_names": [ { "name": "Solute carrier family 16 member 1", "type": "synonym", "evidence": [ { "id": "F1SBQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBQ3", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100156854", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3", "locus": {} } ], "crossref": [ { "id": "F1SBQ3", "url": "https://alphafold.ebi.ac.uk/entry/F1SBQ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006771", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006771", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360:SF314", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360:SF314", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "71779", "url": "https://www.rhea-db.org/rhea/71779", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "71783", "url": "https://www.rhea-db.org/rhea/71783", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SBQ3", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBQ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPSNGGPLGYMPPDGGWGWAVVVGAFISIGFSCAFGKSITVFYKEIEEIFKASSSEVSWLSSIAFAVMYAGGPISSILVNKYGSRPVVIFGGCLSGCGLIAASFCNTMQQLYLCIGVIGGLGLAFNFNPALTIIGKYFYKRRPLANGLAMAGSPVFLCALAPLNQALFATFGWRGSFLILGGILLNCCVAGALMRPIGPKPAGAGKEKSKESLQEAGTPNAKTGAGDANIEVNGLNPSKEKQSVFQTVNQLLDLSLFKHRGFMLYLSGNVLMSFVLATPLVFLSNYAKSQHHSSEKAAFLLSILAFVDMVARPTMGLVANTKWVRPGIQYFYAASIIANGVCHMLVPLATSYLGFCLYAGFLGFAFGWFGAVLFESLMDLLGSQRFSSAVGLVTIVECGPILLGPPILGRLNDIYGDYKYTYWACGIILIISGIYLCIAWAFIFDLWQKNRGQRRSRKRKGKRWNQKKLLKQQNLQT", "length": 478, "header": "tr|F1SBQ3-1|F1SBQ3_PIG Isoform 1 of Solute carrier family 16 member 1 OS=Sus scrofa OX=9823 GN=LOC100156854 PE=3 SV=3 CANONICAL=F1SBQ3-1" }, "isoforms": [ { "isoform_ac": "F1SBQ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3/entry#F1SBQ3-1", "sequence": { "sequence": "MPPSNGGPLGYMPPDGGWGWAVVVGAFISIGFSCAFGKSITVFYKEIEEIFKASSSEVSWLSSIAFAVMYAGGPISSILVNKYGSRPVVIFGGCLSGCGLIAASFCNTMQQLYLCIGVIGGLGLAFNFNPALTIIGKYFYKRRPLANGLAMAGSPVFLCALAPLNQALFATFGWRGSFLILGGILLNCCVAGALMRPIGPKPAGAGKEKSKESLQEAGTPNAKTGAGDANIEVNGLNPSKEKQSVFQTVNQLLDLSLFKHRGFMLYLSGNVLMSFVLATPLVFLSNYAKSQHHSSEKAAFLLSILAFVDMVARPTMGLVANTKWVRPGIQYFYAASIIANGVCHMLVPLATSYLGFCLYAGFLGFAFGWFGAVLFESLMDLLGSQRFSSAVGLVTIVECGPILLGPPILGRLNDIYGDYKYTYWACGIILIISGIYLCIAWAFIFDLWQKNRGQRRSRKRKGKRWNQKKLLKQQNLQT", "length": 478, "header": "tr|F1SBQ3-1|F1SBQ3_PIG Isoform 1 of Solute carrier family 16 member 1 OS=Sus scrofa OX=9823 GN=LOC100156854 PE=3 SV=3 CANONICAL=F1SBQ3-1" }, "locus": { "chromosome": "4", "start_pos": 107638386, "end_pos": 107627389, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007417.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007417.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007222.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007222.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBQ3", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBQ3", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SBQ3", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "plasma membrane lactate transport", "id": "GO:0035879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035879", "evidence": [ { "database": "UniProtKB", "id": "F1SBQ3", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lactate:proton symporter activity", "id": "GO:0015650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015650", "evidence": [ { "database": "UniProtKB", "id": "F1SBQ3", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "71779", "name": "", "equation": "4-methyl-2-oxopentanoate(out) + H(+)(out) = 4-methyl-2-oxopentanoate(in) + H(+)(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71779", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71779" } ] }, { "id": "71783", "name": "", "equation": "3-methyl-2-oxobutanoate(out) + H(+)(out) = 3-methyl-2-oxobutanoate(in) + H(+)(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71783", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71783" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBQ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 478, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBQ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBQ3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBQ3" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 452, "start_aa": "Met", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBT1-1", "uniprot_ac": "F1SBT1", "uniprot_id": "F1SBT1_PIG", "mass": { "chemical_mass": 27157.0, "monoisotopic_mass": 27157.0 }, "refseq": { "ac": "XP_003480863", "name": "tumor necrosis factor ligand superfamily member 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480863" }, "gene_names": [ { "name": "TNFSF9", "type": "recommended", "evidence": [ { "id": "F1SBT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" } ] }, { "name": "TNFSF9", "type": "synonym", "evidence": [ { "id": "XP_003480863", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480863" } ] } ], "protein_names": [ { "name": "TNF superfamily member 9", "type": "synonym", "evidence": [ { "id": "F1SBT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBT1/entry#names_and_taxonomy" } ] }, { "name": "tumor necrosis factor ligand superfamily member 9", "type": "synonym", "evidence": [ { "id": "XP_003480863", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480863" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TNFSF9", "url": "https://www.uniprot.org/uniprotkb/F1SBT1", "locus": { "chromosome": "2", "start_pos": 72578821, "end_pos": 72582745, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022370", "url": "https://www.ensembl.org/id/ENSSSCG00000022370" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022370", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022370", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100736831", "url": "https://www.ncbi.nlm.nih.gov/gene/100736831", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736831", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736831", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPLRWYS", "url": "https://omabrowser.org/oma/group/GPLRWYS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBT1", "url": "https://www.orthodb.org/?gene=F1SBT1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15153", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15153", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15153:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15153:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5669034", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5669034", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003480863", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480863", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBT1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSSDVDQDPEAQRPPAPRGRACSPLPWALSAALLVFAAASAVCLVRSWTAPGAPAAPGPAPSPRLPEGPELTSDALAGFPDYPQGMFQQDVFAQLVVAEGEKLTEGPLHWCSEPGMKGVTLTPGVRYDRDTHELVVVKAGIYYVFLHLALKRVVAVNSNSNSNISSGSVSVALHLQPSHAEATALALTLDLPPPSSGNSAAGFRGGLLHLGAGQRLGVHLHPELRKPLTWQLLDTTALGLFRVATRAPAVLPSHQLS", "length": 259, "header": "tr|F1SBT1-1|F1SBT1_PIG Isoform 1 of TNF superfamily member 9 OS=Sus scrofa OX=9823 GN=TNFSF9 PE=3 SV=2 CANONICAL=F1SBT1-1" }, "isoforms": [ { "isoform_ac": "F1SBT1-1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1/entry#F1SBT1-1", "sequence": { "sequence": "MSSSSDVDQDPEAQRPPAPRGRACSPLPWALSAALLVFAAASAVCLVRSWTAPGAPAAPGPAPSPRLPEGPELTSDALAGFPDYPQGMFQQDVFAQLVVAEGEKLTEGPLHWCSEPGMKGVTLTPGVRYDRDTHELVVVKAGIYYVFLHLALKRVVAVNSNSNSNISSGSVSVALHLQPSHAEATALALTLDLPPPSSGNSAAGFRGGLLHLGAGQRLGVHLHPELRKPLTWQLLDTTALGLFRVATRAPAVLPSHQLS", "length": 259, "header": "tr|F1SBT1-1|F1SBT1_PIG Isoform 1 of TNF superfamily member 9 OS=Sus scrofa OX=9823 GN=TNFSF9 PE=3 SV=2 CANONICAL=F1SBT1-1" }, "locus": { "chromosome": "2", "start_pos": 72582678, "end_pos": 72580123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031223.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031223.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021719.2", "url": "https://www.ensembl.org/id/ENSSSCP00000021719.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736831", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736831", "resource": "KEGG Pathway" }, { "id": "R-SSC-5669034", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5669034", "resource": "Reactome", "description": "TNFs bind their physiological receptors" } ], "orthologs": [ { "uniprot_canonical_ac": "P41273-1", "protein_name": "Tumor necrosis factor ligand superfamily member 9", "gene_name": "TNFSF9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEYASDASLDPEAPWPPAPRARACRVLPWALVAGLLLLLLLAAACAVFLACPWAVSGARASPGSAASPRLREGPELSPDDPAGLLDLRQGMFAQLVAQNVLLIDGPLSWYSDPGLAGVSLTGGLSYKEDTKELVVAKAGVYYVFFQLELRRVVAGEGSGSVSLALHLQPLRSAAGAAALALTVDLPPASSEARNSAFGFQGRLLHLSAGQRLGVHLHTEARARHAWQLTQGATVLGLFRVTPEIPAGLPSPRSE", "length": 254 }, "evidence": [ { "id": "F1SBT1", "url": "https://omabrowser.org/oma/group/F1SBT1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F1SBT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" } ], "pmid": "" }, { "name": "positive regulation of activated T cell proliferation", "id": "GO:0042104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042104", "evidence": [ { "database": "UniProtKB", "id": "F1SBT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" } ], "pmid": "" }, { "name": "positive regulation of cytotoxic T cell differentiation", "id": "GO:0045585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045585", "evidence": [ { "database": "UniProtKB", "id": "F1SBT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "tumor necrosis factor receptor superfamily binding", "id": "GO:0032813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032813", "evidence": [ { "database": "UniProtKB", "id": "F1SBT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" } ], "pmid": "" }, { "name": "tumor necrosis factor receptor binding", "id": "GO:0005164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005164", "evidence": [ { "database": "UniProtKB", "id": "F1SBT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBT1" }, { "id": "PS50049", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50049" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "THD", "eco_id": "ECO_0000259", "start_pos": 93, "end_pos": 245, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 165, "end_pos": 167 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBT4-1", "uniprot_ac": "F1SBT4", "uniprot_id": "F1SBT4_PIG", "mass": { "chemical_mass": 16440.0, "monoisotopic_mass": 16440.0 }, "refseq": {}, "gene_names": [ { "name": "PSPN", "type": "recommended", "evidence": [ { "id": "F1SBT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" } ] } ], "protein_names": [ { "name": "Persephin", "type": "recommended", "evidence": [ { "id": "F1SBT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBT4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Growth factor that exhibits neurotrophic activity on mesencephalic dopaminergic and motor neurons. Acts by binding to its coreceptor, GFRA4, leading to autophosphorylation and activation of the RET receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4#function" }, { "database": "UniProtKB", "id": "ARBA00056401", "url": "https://www.uniprot.org/uniprotkb/ARBA00056401#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSPN", "url": "https://www.uniprot.org/uniprotkb/F1SBT4", "locus": { "chromosome": "2", "start_pos": 72701958, "end_pos": 72701099, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013540", "url": "https://www.ensembl.org/id/ENSSSCG00000013540" } ] } } ], "crossref": [ { "id": "F1SBT4", "url": "https://alphafold.ebi.ac.uk/entry/F1SBT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013540", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013540", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19382", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19382", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043401", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043401", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WHNAPCC", "url": "https://omabrowser.org/oma/group/WHNAPCC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12173:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12173:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00019", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00019", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8853659", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8853659", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBT4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMGRVMLSLLLLLILHLDLGGDPGAWGTPVVEGELSSQPAADRGIQRTQLGARLPRALAGPCQLWSLPLPVAELGLGYTSEEMVIFHYCAGSCPRGARTQHGLTLARLRGQGRAHGGPCCRPTRYADVAFLDDRHRWQRLPQLSAAACACSD", "length": 153, "header": "tr|F1SBT4-1|F1SBT4_PIG Isoform 1 of Persephin OS=Sus scrofa OX=9823 GN=PSPN PE=3 SV=3 CANONICAL=F1SBT4-1" }, "isoforms": [ { "isoform_ac": "F1SBT4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBT4/entry#F1SBT4-1", "sequence": { "sequence": "MAMGRVMLSLLLLLILHLDLGGDPGAWGTPVVEGELSSQPAADRGIQRTQLGARLPRALAGPCQLWSLPLPVAELGLGYTSEEMVIFHYCAGSCPRGARTQHGLTLARLRGQGRAHGGPCCRPTRYADVAFLDDRHRWQRLPQLSAAACACSD", "length": 153, "header": "tr|F1SBT4-1|F1SBT4_PIG Isoform 1 of Persephin OS=Sus scrofa OX=9823 GN=PSPN PE=3 SV=3 CANONICAL=F1SBT4-1" }, "locus": { "chromosome": "2", "start_pos": 72701837, "end_pos": 72701298, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014787.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014787.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014386.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014386.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5673001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "resource": "Reactome", "description": "RAF/MAP kinase cascade" }, { "id": "R-SSC-8853659", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8853659", "resource": "Reactome", "description": "RET signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TRH2-1", "protein_name": "Persephin", "gene_name": "PSPN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "WIPRQFTHLFPACTSALPGAQCGGYWAPVSCPRGEDPHWETHGAPQPSLQTAGRVLLGSLLLLILRLDFGGSQGAWEALVAERELSSEPAVDRETQRPQLGKDSRNPACSPTRLCPDSACSQLPLVPTGARLRRALTSPCQLWSLSLPVAELGLGYTSEETVIFRYCAGSCPRGARTQHGLTLARLQGQGRAHGGPCCRPTRYADVTFLDDHHRWQRLPQLSAAACGCSG", "length": 230 }, "evidence": [ { "id": "F1SBT4", "url": "https://omabrowser.org/oma/group/F1SBT4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O60542-1", "protein_name": "Persephin", "gene_name": "PSPN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVGKFLLGSLLLLSLQLGQGWGPDARGVPVADGEFSSEQVAKAGGTWLGTHRPLARLRRALSGPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRGARTQHGLALARLQGQGRAHGGPCCRPTRYTDVAFLDDRHRWQRLPQLSAAACGCGG", "length": 156 }, "evidence": [ { "id": "F1SBT4", "url": "https://omabrowser.org/oma/group/F1SBT4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O70301-1", "protein_name": "Persephin", "gene_name": "Pspn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAGRLRILFLLLLSLHLGLGWVLDLQEAPAADELSSGKMAETGRTWKPHQGNNNVRLPRALPGLCRLWSLTLPVAELGLGYASEEKIIFRYCAGSCPQEVRTQHSLVLARLRGQGRAHGRPCCQPTSYADVTFLDDHHHWQQLPQLSAAACGCGG", "length": 156 }, "evidence": [ { "id": "F1SBT4", "url": "https://omabrowser.org/oma/group/F1SBT4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "glial cell-derived neurotrophic factor receptor signaling pathway", "id": "GO:0035860", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035860", "evidence": [ { "database": "UniProtKB", "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" } ], "pmid": "" }, { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "receptor tyrosine kinase binding", "id": "GO:0030971", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030971", "evidence": [ { "database": "UniProtKB", "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" } ], "pmid": "" }, { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" } ], "pmid": "" }, { "name": "glial cell-derived neurotrophic factor receptor binding", "id": "GO:0030116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030116", "evidence": [ { "database": "UniProtKB", "id": "F1SBT4", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBT4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 153, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBT4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBT4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBT4" }, { "id": "PS51362", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51362" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TGF-beta family profile", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 152, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBT9-1", "uniprot_ac": "F1SBT9", "uniprot_id": "F1SBT9_PIG", "mass": { "chemical_mass": 61584.0, "monoisotopic_mass": 61584.0 }, "refseq": { "ac": "XP_020939651", "name": "protein ENL isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939651" }, "gene_names": [ { "name": "MLLT1", "type": "recommended", "evidence": [ { "id": "F1SBT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBT9" } ] }, { "name": "MLLT1", "type": "synonym", "evidence": [ { "id": "XP_020939651", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939651" } ] } ], "protein_names": [ { "name": "MLLT1 super elongation complex subunit", "type": "synonym", "evidence": [ { "id": "F1SBT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBT9/entry#names_and_taxonomy" } ] }, { "name": "protein ENL isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020939651", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939651" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBT9", "url": "https://www.uniprot.org/uniprotkb/F1SBT9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MLLT1", "url": "https://www.uniprot.org/uniprotkb/F1SBT9", "locus": { "chromosome": "2", "start_pos": 72847685, "end_pos": 72781121, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013534", "url": "https://www.ensembl.org/id/ENSSSCG00000013534" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013534", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013534", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16906", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16906", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517879", "url": "https://www.ncbi.nlm.nih.gov/gene/100517879", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038704", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038704", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517879", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517879", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MYQYDLD", "url": "https://omabrowser.org/oma/group/MYQYDLD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SBT9", "url": "https://www.orthodb.org/?gene=F1SBT9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47827", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47827", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47827:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47827:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03366", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03366", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17793", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17793", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-112382", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-674695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75955", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020939651", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020939651", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBT9", "url": "https://www.uniprot.org/uniprotkb/F1SBT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBT9-1", "url": "https://www.uniprot.org/uniprotkb/F1SBT9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNQCTVQVKLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFRLHDSFPKPKRVCKEPPYKVEESGYAGFIMPIEVYFKNKEEPRKVCFTYDLFLNLEGNPPVNHLRCEKLTFNNPTVEFRYKLLMAGGVMVMPEGAETVSRPSPDYPMLPTIPLSAFSDPKKTKPSHGSKDASRESGKACKAHKTAKEHRERPRKDSESRGPSKEPEREQARSAKDATRKLGEGRPPKEEKAPPPKAAFKEPKMALKETKLESMSPKGGPPPPPPPKSSSKRPAAADSPKPSAKKQKKSSSKGSRSAPSTSPRTSSSSFSDKKPAKDKGSSKGEKVKAESEPREIKKPPEVEESNSEDEASFKTESAQSSPSNSSSSSDSSSDSDFEPSQNHSQGPLRSMVEGLQSEESDEDDSSSGEEAAGKTNAGRDSRLSFSDSESDNSADSCLPSREPPPPKKPPPPHSKASGRRSPEPCSKPEKILKRGAYDKAYTDELVELHRRLMALRERNVLQQIVNLIEETGHFNVTNTTFDFDLFSLDETTVRKLQSYLEAVAT", "length": 556, "header": "tr|F1SBT9-1|F1SBT9_PIG Isoform 1 of MLLT1 super elongation complex subunit OS=Sus scrofa OX=9823 GN=MLLT1 PE=4 SV=3 CANONICAL=F1SBT9-1" }, "isoforms": [ { "isoform_ac": "F1SBT9-1", "url": "https://www.uniprot.org/uniprotkb/F1SBT9/entry#F1SBT9-1", "sequence": { "sequence": "MDNQCTVQVKLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFRLHDSFPKPKRVCKEPPYKVEESGYAGFIMPIEVYFKNKEEPRKVCFTYDLFLNLEGNPPVNHLRCEKLTFNNPTVEFRYKLLMAGGVMVMPEGAETVSRPSPDYPMLPTIPLSAFSDPKKTKPSHGSKDASRESGKACKAHKTAKEHRERPRKDSESRGPSKEPEREQARSAKDATRKLGEGRPPKEEKAPPPKAAFKEPKMALKETKLESMSPKGGPPPPPPPKSSSKRPAAADSPKPSAKKQKKSSSKGSRSAPSTSPRTSSSSFSDKKPAKDKGSSKGEKVKAESEPREIKKPPEVEESNSEDEASFKTESAQSSPSNSSSSSDSSSDSDFEPSQNHSQGPLRSMVEGLQSEESDEDDSSSGEEAAGKTNAGRDSRLSFSDSESDNSADSCLPSREPPPPKKPPPPHSKASGRRSPEPCSKPEKILKRGAYDKAYTDELVELHRRLMALRERNVLQQIVNLIEETGHFNVTNTTFDFDLFSLDETTVRKLQSYLEAVAT", "length": 556, "header": "tr|F1SBT9-1|F1SBT9_PIG Isoform 1 of MLLT1 super elongation complex subunit OS=Sus scrofa OX=9823 GN=MLLT1 PE=4 SV=3 CANONICAL=F1SBT9-1" }, "locus": { "chromosome": "2", "start_pos": 72845158, "end_pos": 72781147, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014781.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014781.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014381.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014381.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBT9", "url": "https://www.uniprot.org/uniprotkb/F1SBT9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517879", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517879", "resource": "KEGG Pathway" }, { "id": "R-SSC-112382", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112382", "resource": "Reactome", "description": "Formation of RNA Pol II elongation complex" }, { "id": "R-SSC-674695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-674695", "resource": "Reactome", "description": "RNA Polymerase II Pre-transcription Events" }, { "id": "R-SSC-75955", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75955", "resource": "Reactome", "description": "RNA Polymerase II Transcription Elongation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4KG69-1", "protein_name": "ENL/AF9-related, isoform B", "gene_name": "ear", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAVKVQFEIGHTSKLRSKKTPHPQAFTHDWEIYVQGVNKADISAFVEKVVFVLHESFPKPKRVVKEPPYAIQESGYAGFLLPVEIYFRNRDEPKRIVYQYDLVLQSTGPPQHHVEVKTHIFEAPSEEFRTKLMRGGGVPVFGANIGAGSLARTLSPSVGSGETAHSNEMSGVKAKGVPGTISMNSDLNTGKKHKSRSEDPGKSNAFSALFGPPITKTSVTANNMAQVPVSKHSPEAKSAAVGGKGVFHEGREKASKDRDKSSGGDKPREKDKKDRHGRDKDRKSSKSGDGKHERDKEKSKKDKSRDKEREREQGSGNTTSANALTVATSVGTAGGLVKHTASPKPGKPNEMGAPSPKKTANDSAAGAVAPTSRSKERDEHKSVKSESKDKERSSSKKSKKDKKDKDKQRDESKDKRMPKDERPGQSDSPASGNLQSAHLQQQSQVASTGKATPTSVGSNSSSSMVSNIGKQKEEATGKHSEKAAESKGDKSTSNGNATDTKKSHKHKKKEKSKDKEKERNDRDKDKDKERDKDKLKEREKDKQHVTGSEKSSTVDPSPKLEGASPATEGGAPDKTPVSASASSGSKKEKHKKSKEKSSGKDEKRQREAVDKQADTKHTGKSQQSQSGQSKTPSNLDLSDMDSAQSAPDLAATNALAAAAAATLQHSDSSNSSFPDLPARSSSQQKPTKGNTGSGKETKSTVKEHKGKSKQNDKTLEKNTDKTEKPDKTPDPKVDKSEKSEKEDKKRNRRSSQSSNSGSGAGVTGAFIEPPVKASKKEQGKAAGEKSKSPSLRPPRETNSTGTGGGTPNAGAGFLAPPSSSPSNNHSAAVAASLNNNNNNNNNNTNSNSSHSPGEMTTPGQLQLPTEYLSELQELHHKIMTLQDNEELQHVVEMIAATGCYEITHKTFDFDLCKLDRGTVQRLQEFLATSVSXHSLTSATGPALYS", "length": 945 }, "evidence": [ { "id": "F1SBT9", "url": "https://omabrowser.org/oma/group/F1SBT9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "M0R462-1", "protein_name": "MLLT1, super elongation complex subunit", "gene_name": "Mllt1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDNQCTVQVKLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVIFRLHDSFPKPKRVCKEPPYKVEESGYAGFIMLIEVYFKNKEEPRKVCFTYDLFLNLEGNPPVNHLRCEKLTFNNPTTEFRCKLLMAGGVMVMPEGADTVSRPSPDYPMLPTIPLSAFSDPKKNKPSHGSKDANKESGKASKPHKVAREHRERPRKDSESRSCSKEPEREPKSAKDAARKLPKEEKAPVPKAAFKEPKMALKETKLESLSPKGVSQPPTLPKASSKRPAATDSPKPSAKKPKKSGSKGARRAPGTSPRASSFPDKKVARDKSSKGDKGKMESEPREAKRTLQAEDSNSEDEASFRSESAQSSPAHASSSSDSSSDSDFEPSQNHSQGPLRSMVEDLQSEGSDEDDSSSGEESTVKTNPGRESRLSFSDSESDNSADSCLPGREPLPPQKPPPPSSKVTGRRSPEPCSKPEKILKKATYDKAYTDELVELHRRLMALRERNVLQQIVNLIEETGHFNVTNTTFDFDLFSLDESTVRKLQSCLEAVAT", "length": 547 }, "evidence": [ { "id": "F1SBT9", "url": "https://omabrowser.org/oma/group/F1SBT9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q03111-1", "protein_name": "Protein ENL", "gene_name": "MLLT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDNQCTVQVRLELGHRAQLRKKPTTEGFTHDWMVFVRGPEQCDIQHFVEKVVFWLHDSFPKPRRVCKEPPYKVEESGYAGFIMPIEVHFKNKEEPRKVCFTYDLFLNLEGNPPVNHLRCEKLTFNNPTTEFRYKLLRAGGVMVMPEGADTVSRPSPDYPMLPTIPLSAFSDPKKTKPSHGSKDANKESSKTSKPHKVTKEHRERPRKDSESKSSSKELEREQAKSSKDTSRKLGEGRLPKEEKAPPPKAAFKEPKMALKETKLESTSPKGGPPPPPPPPPRASSKRPATADSPKPSAKKQKKSSSKGSRSAPGTSPRTSSSSSFSDKKPAKDKSSTRGEKVKAESEPREAKKALEVEESNSEDEASFKSESAQSSPSNSSSSSDSSSDSDFEPSQNHSQGPLRSMVEDLQSEESDEDDSSSGEEAAGKTNPGRDSRLSFSDSESDNSADSSLPSREPPPPQKPPPPNSKVSGRRSPESCSKPEKILKKGTYDKAYTDELVELHRRLMALRERNVLQQIVNLIEETGHFNVTNTTFDFDLFSLDETTVRKLQSCLEAVAT", "length": 559 }, "evidence": [ { "id": "F1SBT9", "url": "https://omabrowser.org/oma/group/F1SBT9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SBT9", "url": "https://www.uniprot.org/uniprotkb/F1SBT9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SBT9", "url": "https://www.uniprot.org/uniprotkb/F1SBT9" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SBT9", "url": "https://www.uniprot.org/uniprotkb/F1SBT9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "transcription elongation factor complex", "id": "GO:0008023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008023", "evidence": [ { "database": "UniProtKB", "id": "F1SBT9", "url": "https://www.uniprot.org/uniprotkb/F1SBT9" } ], "pmid": "" }, { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "F1SBT9", "url": "https://www.uniprot.org/uniprotkb/F1SBT9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 393, "end_pos": 395, "annotation": "n_glycosylation_sequon" }, { "start_pos": 526, "end_pos": 528, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBT9" }, { "id": "PS51037", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51037" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "YEATS", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 138, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 375, "end_pos": 377 }, { "start_pos": 393, "end_pos": 395 }, { "start_pos": 526, "end_pos": 528 }, { "start_pos": 529, "end_pos": 531 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBU8-1", "uniprot_ac": "F1SBU8", "uniprot_id": "F1SBU8_PIG", "mass": { "chemical_mass": 13338.0, "monoisotopic_mass": 13338.0 }, "refseq": {}, "gene_names": [ { "name": "MICOS13", "type": "recommended", "evidence": [ { "id": "F1SBU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBU8" } ] } ], "protein_names": [ { "name": "MICOS complex subunit MIC13", "type": "recommended", "evidence": [ { "id": "F1SBU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBU8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.", "evidence": [ { "database": "UniProtKB", "id": "F1SBU8", "url": "https://www.uniprot.org/uniprotkb/F1SBU8#function" }, { "database": "UniProtKB", "id": "RU363009", "url": "https://www.uniprot.org/uniprotkb/RU363009#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBU8", "url": "https://www.uniprot.org/uniprotkb/F1SBU8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MICOS13", "url": "https://www.uniprot.org/uniprotkb/F1SBU8", "locus": { "chromosome": "2", "start_pos": 73296836, "end_pos": 73294842, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013524", "url": "https://www.ensembl.org/id/ENSSSCG00000013524" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013524", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013524", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GWKYMKD", "url": "https://omabrowser.org/oma/group/GWKYMKD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31816", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31816", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31816:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31816:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15884", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15884", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SBU8", "url": "https://www.uniprot.org/uniprotkb/F1SBU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBU8-1", "url": "https://www.uniprot.org/uniprotkb/F1SBU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPRVWSLMRFLIKGSVAGGAIYLVYDQDLLGPSDKSQAALQKAEEVVPPAVYQFSQYVCEQTGLKIPQLPAPPKFNFHIRDYWNSGVIKVMSALSVAPSKAREYSKEGWEYLKERTK", "length": 118, "header": "tr|F1SBU8-1|F1SBU8_PIG Isoform 1 of MICOS complex subunit MIC13 OS=Sus scrofa OX=9823 GN=MICOS13 PE=1 SV=1 CANONICAL=F1SBU8-1" }, "isoforms": [ { "isoform_ac": "F1SBU8-1", "url": "https://www.uniprot.org/uniprotkb/F1SBU8/entry#F1SBU8-1", "sequence": { "sequence": "MVPRVWSLMRFLIKGSVAGGAIYLVYDQDLLGPSDKSQAALQKAEEVVPPAVYQFSQYVCEQTGLKIPQLPAPPKFNFHIRDYWNSGVIKVMSALSVAPSKAREYSKEGWEYLKERTK", "length": 118, "header": "tr|F1SBU8-1|F1SBU8_PIG Isoform 1 of MICOS complex subunit MIC13 OS=Sus scrofa OX=9823 GN=MICOS13 PE=1 SV=1 CANONICAL=F1SBU8-1" }, "locus": { "chromosome": "2", "start_pos": 73296709, "end_pos": 73295251, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014771.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014771.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014371.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014371.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBU8", "url": "https://www.uniprot.org/uniprotkb/F1SBU8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3HCJ0-1", "protein_name": "MICOS complex subunit MIC13", "gene_name": "Micos13", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVARVWSLMRFLIKGSVAGGAVYLVYDQELLGPSDKSEAALRKAEEVVPPAMYQFSQYVCQQTGLEMPQLPAPPKINFPNFRESWNSGIISVMAALSVAPSKAREYSKEGWDYVKEHSK", "length": 119 }, "evidence": [ { "id": "F1SBU8", "url": "https://omabrowser.org/oma/group/F1SBU8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "M0R719-1", "protein_name": "MICOS complex subunit MIC13", "gene_name": "Micos13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVARVWSLMRFLIKGSVAGGAVYLVYDQELLGPSDKSEAVLRKAEEVVPPAMYQFSQYVCQQTGLEMSQLPAPPKINFPNFRDSWNSGIISVMAALSVAPSKAREYSREGWEYVKEHTK", "length": 119 }, "evidence": [ { "id": "F1SBU8", "url": "https://omabrowser.org/oma/group/F1SBU8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1LUK1-1", "protein_name": "MICOS complex subunit MIC13", "gene_name": "micos13", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAKIFPVVKFATKVTIAGGALYVAYDSGLLGGSNEGSVALARAKSAIPPAVDEWMKYFGFELPATPKIEFSPLDAWNSGVQKSIHALSVAPSTVGDYTKQGLQYVKDLSK", "length": 111 }, "evidence": [ { "id": "F1SBU8", "url": "https://omabrowser.org/oma/group/F1SBU8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5XKP0-1", "protein_name": "MICOS complex subunit MIC13", "gene_name": "MICOS13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVARVWSLMRFLIKGSVAGGAVYLVYDQELLGPSDKSQAALQKAGEVVPPAMYQFSQYVCQQTGLQIPQLPAPPKIYFPIRDSWNAGIMTVMSALSVAPSKAREYSKEGWEYVKARTK", "length": 118 }, "evidence": [ { "id": "F1SBU8", "url": "https://omabrowser.org/oma/group/F1SBU8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R404-1", "protein_name": "MICOS complex subunit MIC13", "gene_name": "Micos13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVARVWSLMRFLIKGSVAGGAVYLVYDQELLGPSDKSEAALRKAEEVVPPAMYQFSQYVCQQTGLEMPQLPTPPKIKFPNFRDSWNSGIISVMSALSVAPSKAREYSKEGWEYLKEHSK", "length": 119 }, "evidence": [ { "id": "F1SBU8", "url": "https://omabrowser.org/oma/group/F1SBU8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cristae formation", "id": "GO:0042407", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042407", "evidence": [ { "database": "UniProtKB", "id": "F1SBU8", "url": "https://www.uniprot.org/uniprotkb/F1SBU8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial crista junction", "id": "GO:0044284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044284", "evidence": [ { "database": "UniProtKB", "id": "F1SBU8", "url": "https://www.uniprot.org/uniprotkb/F1SBU8" } ], "pmid": "" }, { "name": "MICOS complex", "id": "GO:0061617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061617", "evidence": [ { "database": "UniProtKB", "id": "F1SBU8", "url": "https://www.uniprot.org/uniprotkb/F1SBU8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBV3-1", "uniprot_ac": "F1SBV3", "uniprot_id": "F1SBV3_PIG", "mass": { "chemical_mass": 36222.0, "monoisotopic_mass": 36222.0 }, "refseq": { "ac": "XP_003128641", "name": "olfactory receptor 4K15-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128641" }, "gene_names": [ { "name": "LOC100524094", "type": "recommended", "evidence": [ { "id": "F1SBV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBV3" } ] }, { "name": "LOC100524094", "type": "synonym", "evidence": [ { "id": "XP_003128641", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128641" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SBV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBV3/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 4K15-like", "type": "synonym", "evidence": [ { "id": "XP_003128641", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128641" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SBV3", "url": "https://www.uniprot.org/uniprotkb/F1SBV3#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBV3", "url": "https://www.uniprot.org/uniprotkb/F1SBV3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100524094", "url": "https://www.uniprot.org/uniprotkb/F1SBV3", "locus": {} } ], "crossref": [ { "id": "F1SBV3", "url": "https://alphafold.ebi.ac.uk/entry/F1SBV3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15226", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15226", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524094", "url": "https://www.ncbi.nlm.nih.gov/gene/100524094", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524094", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524094", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SBV3", "url": "https://www.orthodb.org/?gene=F1SBV3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003128641", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128641", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBV3", "url": "https://www.uniprot.org/uniprotkb/F1SBV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBV3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPVNNSRVAEFVLLGLSSSWELQYFFFMLFNLLYVTIVLGNLLIVLTVISEPALHTPMYIMLSNLSVLDVFLATYATPKMIHDFLYEPKTISFEGCMAQIFLLHVFAGGEMMLLAAMAYDRYVAICKPLHYATIMNLCKCTGLVVGSWVIGVMHALSQLAFTVNLSFCGPNIVDSYYCDLTLVIKLACTDPYVPEVLMLLDSGLMGVTSFVLLLISYAVILVTVRQRSSVHMAKARSTLTAHIIVVTLFFGPCIFIYAWPFSNFPVDKVLSVFSTVFTPILNPIIYTLRNKEVKSAMYKLKTKYVNSRLLSQLSLSRLDLLS", "length": 323, "header": "tr|F1SBV3-1|F1SBV3_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100524094 PE=3 SV=4 CANONICAL=F1SBV3-1" }, "isoforms": [ { "isoform_ac": "F1SBV3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBV3/entry#F1SBV3-1", "sequence": { "sequence": "MDPVNNSRVAEFVLLGLSSSWELQYFFFMLFNLLYVTIVLGNLLIVLTVISEPALHTPMYIMLSNLSVLDVFLATYATPKMIHDFLYEPKTISFEGCMAQIFLLHVFAGGEMMLLAAMAYDRYVAICKPLHYATIMNLCKCTGLVVGSWVIGVMHALSQLAFTVNLSFCGPNIVDSYYCDLTLVIKLACTDPYVPEVLMLLDSGLMGVTSFVLLLISYAVILVTVRQRSSVHMAKARSTLTAHIIVVTLFFGPCIFIYAWPFSNFPVDKVLSVFSTVFTPILNPIIYTLRNKEVKSAMYKLKTKYVNSRLLSQLSLSRLDLLS", "length": 323, "header": "tr|F1SBV3-1|F1SBV3_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100524094 PE=3 SV=4 CANONICAL=F1SBV3-1" }, "locus": { "chromosome": "AEMK02000410.1", "start_pos": 222292, "end_pos": 221324, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002457.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002457.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002396.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002396.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBV3", "url": "https://www.uniprot.org/uniprotkb/F1SBV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524094", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524094", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SBV3", "url": "https://www.uniprot.org/uniprotkb/F1SBV3" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SBV3", "url": "https://www.uniprot.org/uniprotkb/F1SBV3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBV3", "url": "https://www.uniprot.org/uniprotkb/F1SBV3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBV3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 323, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBV3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBV3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBV3" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 287, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 165, "end_pos": 167 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBV4-1", "uniprot_ac": "F1SBV4", "uniprot_id": "F1SBV4_PIG", "mass": { "chemical_mass": 34292.0, "monoisotopic_mass": 34292.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100154723", "type": "recommended", "evidence": [ { "id": "F1SBV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBV4" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SBV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBV4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SBV4", "url": "https://www.uniprot.org/uniprotkb/F1SBV4#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBV4", "url": "https://www.uniprot.org/uniprotkb/F1SBV4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100154723", "url": "https://www.uniprot.org/uniprotkb/F1SBV4", "locus": {} } ], "crossref": [ { "id": "F1SBV4", "url": "https://alphafold.ebi.ac.uk/entry/F1SBV4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034109", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034109", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15937", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15937", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154723", "url": "https://www.ncbi.nlm.nih.gov/gene/100154723", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154723", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154723", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SBV4", "url": "https://www.orthodb.org/?gene=F1SBV4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SBV4", "url": "https://www.uniprot.org/uniprotkb/F1SBV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBV4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBV4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305, "header": "tr|F1SBV4-1|F1SBV4_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100154723 PE=3 SV=2 CANONICAL=F1SBV4-1" }, "isoforms": [ { "isoform_ac": "F1SBV4-1", "url": "https://www.uniprot.org/uniprotkb/F1SBV4/entry#F1SBV4-1", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305, "header": "tr|F1SBV4-1|F1SBV4_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100154723 PE=3 SV=2 CANONICAL=F1SBV4-1" }, "locus": { "chromosome": "AEMK02000661.1", "start_pos": 487967, "end_pos": 487053, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002456.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002456.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002395.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002395.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBV4", "url": "https://www.uniprot.org/uniprotkb/F1SBV4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154723", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154723", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "F1SBV4", "url": "https://omabrowser.org/oma/group/F1SBV4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SBV4", "url": "https://www.uniprot.org/uniprotkb/F1SBV4" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SBV4", "url": "https://www.uniprot.org/uniprotkb/F1SBV4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBV4", "url": "https://www.uniprot.org/uniprotkb/F1SBV4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBV4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 305, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBV4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBV4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBV4" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 287, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBV6-1", "uniprot_ac": "F1SBV6", "uniprot_id": "F1SBV6_PIG", "mass": { "chemical_mass": 34713.0, "monoisotopic_mass": 34713.0 }, "refseq": { "ac": "XP_013853130", "name": "olfactory receptor 11G2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853130" }, "gene_names": [ { "name": "LOC100524879", "type": "recommended", "evidence": [ { "id": "F1SBV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBV6" } ] }, { "name": "LOC100524879", "type": "synonym", "evidence": [ { "id": "XP_013853130", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853130" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SBV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBV6/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 11G2-like", "type": "synonym", "evidence": [ { "id": "XP_013853130", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853130" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SBV6", "url": "https://www.uniprot.org/uniprotkb/F1SBV6#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBV6", "url": "https://www.uniprot.org/uniprotkb/F1SBV6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100524879", "url": "https://www.uniprot.org/uniprotkb/F1SBV6", "locus": {} } ], "crossref": [ { "id": "F1SBV6", "url": "https://alphafold.ebi.ac.uk/entry/F1SBV6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15913", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15913", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524879", "url": "https://www.ncbi.nlm.nih.gov/gene/100524879", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524879", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524879", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SBV6", "url": "https://www.orthodb.org/?gene=F1SBV6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24242:SF364", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24242:SF364", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013853130", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853130", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBV6", "url": "https://www.uniprot.org/uniprotkb/F1SBV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBV6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNISNTPSNSSTITGFILLGFPCSRHGQILLFLLFAGVYLLTLMGNGSIICAVRWDRRLHTPMYILLANFSFLEISYVTSTVPNMLANLLSDNKVISFSGCFLQFYFFFSLGSTECFFLAIMAFDRYLAICWPLQYPTLMTARLCTNLVVSCWVLGFLWFPIPIIIISQMTFCGSRIIDHFLCDPVPLLALTCTTAPVMEVFWSIISSLLLFIPFLCIMGSYALVLHAVLKVPSAAGRRKAFSTCGSHLAVVSLFYGSVMVMYLSPTSEHDAGMQKLVTLFYSVGTPLINPVIYSLRNKDIKHALKKFLGI", "length": 311, "header": "tr|F1SBV6-1|F1SBV6_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100524879 PE=3 SV=3 CANONICAL=F1SBV6-1" }, "isoforms": [ { "isoform_ac": "F1SBV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SBV6/entry#F1SBV6-1", "sequence": { "sequence": "MNISNTPSNSSTITGFILLGFPCSRHGQILLFLLFAGVYLLTLMGNGSIICAVRWDRRLHTPMYILLANFSFLEISYVTSTVPNMLANLLSDNKVISFSGCFLQFYFFFSLGSTECFFLAIMAFDRYLAICWPLQYPTLMTARLCTNLVVSCWVLGFLWFPIPIIIISQMTFCGSRIIDHFLCDPVPLLALTCTTAPVMEVFWSIISSLLLFIPFLCIMGSYALVLHAVLKVPSAAGRRKAFSTCGSHLAVVSLFYGSVMVMYLSPTSEHDAGMQKLVTLFYSVGTPLINPVIYSLRNKDIKHALKKFLGI", "length": 311, "header": "tr|F1SBV6-1|F1SBV6_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100524879 PE=3 SV=3 CANONICAL=F1SBV6-1" }, "locus": { "chromosome": "7", "start_pos": 78735433, "end_pos": 78734501, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002454.3", "url": "https://www.ensembl.org/id/ENSSSCT00000002454.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002393.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002393.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBV6", "url": "https://www.uniprot.org/uniprotkb/F1SBV6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524879", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524879", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SBV6", "url": "https://www.uniprot.org/uniprotkb/F1SBV6" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SBV6", "url": "https://www.uniprot.org/uniprotkb/F1SBV6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBV6", "url": "https://www.uniprot.org/uniprotkb/F1SBV6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" }, { "start_pos": 46, "end_pos": 48, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBV6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBV6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBV6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBV6" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 294, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 2, "end_pos": 4 }, { "start_pos": 46, "end_pos": 48 }, { "start_pos": 69, "end_pos": 71 }, { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SBX3-1", "uniprot_ac": "F1SBX3", "uniprot_id": "F1SBX3_PIG", "mass": { "chemical_mass": 89270.0, "monoisotopic_mass": 89270.0 }, "refseq": { "ac": "XP_020919137", "name": "semaphorin-3A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919137" }, "gene_names": [ { "name": "SEMA3A", "type": "recommended", "evidence": [ { "id": "F1SBX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ] }, { "name": "SEMA3A", "type": "synonym", "evidence": [ { "id": "XP_020919137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919137" } ] } ], "protein_names": [ { "name": "Semaphorin 3A", "type": "synonym", "evidence": [ { "id": "F1SBX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBX3/entry#names_and_taxonomy" } ] }, { "name": "semaphorin-3A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020919137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919137" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEMA3A", "url": "https://www.uniprot.org/uniprotkb/F1SBX3", "locus": { "chromosome": "9", "start_pos": 96387950, "end_pos": 96181770, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015398", "url": "https://www.ensembl.org/id/ENSSSCG00000015398" } ] } } ], "crossref": [ { "id": "F1SBX3", "url": "https://alphafold.ebi.ac.uk/entry/F1SBX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015398", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015398", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05871", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05871", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11249", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11249", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620398", "url": "https://www.ncbi.nlm.nih.gov/gene/100620398", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041416", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041416", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042820", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042820", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YEQPCCA", "url": "https://omabrowser.org/oma/group/YEQPCCA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11036:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11036:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01403", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01403", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18452", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18452", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-399954", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399954", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-399955", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399955", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-399956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020919137", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919137", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SBX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWFSRIVCLFWGVLLTARANYQNGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLKAYNQTHLYACGTGAFHPICTYIEIGHHPEDNIFKLEDSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHTGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPVVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSIPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYVGSAAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSRYFPTAKRRTRRQDIRNGDPLTHCSDLQHHDNHRGHNFEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNEERKEEIRVDDHIIRTEQGLLLRSLQRKDSGSYLCHAVEHGFMQTLLKVTLEVIDTEHLEELLHKDDDGDSSKTKEMSNSMTPSQKIWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHTQGNSNKWKHLQENKKCRNRRTHEFERAPRSV", "length": 772, "header": "tr|F1SBX3-1|F1SBX3_PIG Isoform 1 of Semaphorin 3A OS=Sus scrofa OX=9823 GN=SEMA3A PE=3 SV=3 CANONICAL=F1SBX3-1" }, "isoforms": [ { "isoform_ac": "F1SBX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SBX3/entry#F1SBX3-1", "sequence": { "sequence": "MGWFSRIVCLFWGVLLTARANYQNGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLKAYNQTHLYACGTGAFHPICTYIEIGHHPEDNIFKLEDSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHTGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPVVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSIPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYVGSAAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSRYFPTAKRRTRRQDIRNGDPLTHCSDLQHHDNHRGHNFEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNEERKEEIRVDDHIIRTEQGLLLRSLQRKDSGSYLCHAVEHGFMQTLLKVTLEVIDTEHLEELLHKDDDGDSSKTKEMSNSMTPSQKIWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHTQGNSNKWKHLQENKKCRNRRTHEFERAPRSV", "length": 772, "header": "tr|F1SBX3-1|F1SBX3_PIG Isoform 1 of Semaphorin 3A OS=Sus scrofa OX=9823 GN=SEMA3A PE=3 SV=3 CANONICAL=F1SBX3-1" }, "locus": { "chromosome": "9", "start_pos": 96385046, "end_pos": 96182142, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016773.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016773.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016325.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016325.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-399954", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399954", "resource": "Reactome", "description": "Sema3A PAK dependent Axon repulsion" }, { "id": "R-SSC-399955", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399955", "resource": "Reactome", "description": "SEMA3A-Plexin repulsion signaling by inhibiting Integrin adhesion" }, { "id": "R-SSC-399956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-399956", "resource": "Reactome", "description": "CRMPs in Sema3A signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LP95-1", "protein_name": "Semaphorin-3A", "gene_name": "Sema3a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGWLTGIACLFWGVLLTARANYANGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLKAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLHDSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFRDPTTISAMELSTKQQQLYIGSASGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSRYFPTAKRRTRRQDIRNGDPLTHCSDLQHHDNHHGHSLEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNDDRKEEIRVGDHIIRTEQGLLLRSLQKKDSGNYLCHAVEHGFMQTLLKVTLEVIDTEHLEELLHKEDDGDGSKTKEMPSSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHSQGSPNKWKHMQESKKGRNRRTHEFERAPRSV", "length": 772 }, "evidence": [ { "id": "F1SBX3", "url": "https://omabrowser.org/oma/group/F1SBX3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1MEW1-1", "protein_name": "Semaphorin 3A", "gene_name": "SEMA3A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGWFARIVCLFWGVLLTARANYQNGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLKAYNQTHLYACGTGAFHPVCTYIEIGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHTGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPVVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSIPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTTGVTQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSRYFPTAKRRTRRQDIRNGDPLTHCSDLQHHDNHHGHSFEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNEEPKEEIRVDDHIIRTEQGLLLRSLQRKDSGNYLCHAVEHGFMQTLLKVTLEVIDTEHLEELLHKDDDGDGSKTKETSNSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHTQGNSNKWKHLQENKKGRNRRTHEFERAPRSV", "length": 772 }, "evidence": [ { "id": "F1SBX3", "url": "https://omabrowser.org/oma/group/F1SBX3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O08665-1", "protein_name": "Semaphorin-3A", "gene_name": "Sema3a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGWFTGIACLFWGVLLTARANYANGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLEAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEILLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSRYFPTAKRRTRRQDIRNGDPLTHCSDLQHHDNHHGPSLEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNEDRKEEIRMGDHIIRTEQGLLLRSLQKKDSGNYLCHAVEHGFMQTLLKVTLEVIDTEHLEELLHKDDDGDGSKIKEMSSSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHSQGSSNKWKHMQESKKGRNRRTHEFERAPRSV", "length": 772 }, "evidence": [ { "id": "F1SBX3", "url": "https://omabrowser.org/oma/group/F1SBX3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q14563-1", "protein_name": "Semaphorin-3A", "gene_name": "SEMA3A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGWLTRIVCLFWGVLLTARANYQNGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFDLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLKAYNQTHLYACGTGAFHPICTYIEIGHHPEDNIFKLENSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPKFISAHLISESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNFKDPKNPVVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPMNNRPIVIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSIPKETWYDLEEVLLEEMTVFREPTAISAMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSACSRYFPTAKRRTRRQDIRNGDPLTHCSDLHHDNHHGHSPEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNEERKEEIRVDDHIIRTDQGLLLRSLQQKDSGNYLCHAVEHGFIQTLLKVTLEVIDTEHLEELLHKDDDGDGSKTKEMSNSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHTPGNSNKWKHLQENKKGRNRRTHEFERAPRSV", "length": 771 }, "evidence": [ { "id": "F1SBX3", "url": "https://omabrowser.org/oma/group/F1SBX3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q63548-1", "protein_name": "Semaphorin-3A", "gene_name": "Sema3a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGWFTGIACLFWGILLTARANYANGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTFLLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKVLKAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASLLIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRPIMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGSSCSRYFPTAKRRTRRQDIRNGDPLTHCSDLQHHDNHHGHSLEERIIYGVENSSTFLECSPKSQRALVYWQFQRRNEDRKEEIRVGDHIIRTEQGLLLRSLQKKDSGNYLCHAVEHGFMQTLLKVTLEVIDTEHLEELLHKDDDGDGSKTKEMSSSMTPSQKVWYRDFMQLINHPNLNTMDEFCEQVWKRDRKQRRQRPGHSQGSSNKWKHMQESKKGRNRRTHEFERAPRSV", "length": 772 }, "evidence": [ { "id": "F1SBX3", "url": "https://omabrowser.org/oma/group/F1SBX3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "semaphorin receptor binding", "id": "GO:0030215", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030215", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "neuropilin binding", "id": "GO:0038191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038191", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "chemorepellent activity", "id": "GO:0045499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045499", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "semaphorin-plexin signaling pathway", "id": "GO:0071526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071526", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "negative regulation of neuron projection development", "id": "GO:0010977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010977", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "neural crest cell migration", "id": "GO:0001755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001755", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "negative chemotaxis", "id": "GO:0050919", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050919", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "regulation of axon extension involved in axon guidance", "id": "GO:0048841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048841", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "motor neuron axon guidance", "id": "GO:0008045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008045", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" }, { "name": "olfactory bulb development", "id": "GO:0021772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021772", "evidence": [ { "database": "UniProtKB", "id": "F1SBX3", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 591, "end_pos": 593, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SBX3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 772, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SBX3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SBX3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SBX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 590, "end_pos": 665, "start_aa": "Glu", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SBX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SBX3" }, { "id": "PS51004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sema", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 514, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 53, "end_pos": 55 }, { "start_pos": 591, "end_pos": 593 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SC14-1", "uniprot_ac": "F1SC14", "uniprot_id": "F1SC14_PIG", "mass": { "chemical_mass": 36976.0, "monoisotopic_mass": 36976.0 }, "refseq": {}, "gene_names": [ { "name": "POLR1F", "type": "recommended", "evidence": [ { "id": "F1SC14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC14" } ] } ], "protein_names": [ { "name": "DNA-directed RNA polymerase subunit", "type": "recommended", "evidence": [ { "id": "F1SC14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC14/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of RNA polymerase I (Pol I), a DNA-dependent RNA polymerase which synthesizes ribosomal RNA precursors using the four ribonucleoside triphosphates as substrates. Through its association with RRN3/TIF-IA may be involved in recruitment of Pol I to rDNA promoters.", "evidence": [ { "database": "UniProtKB", "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14#function" }, { "database": "UniProtKB", "id": "ARBA00054032", "url": "https://www.uniprot.org/uniprotkb/ARBA00054032#function" } ] }, { "annotation": "DNA-dependent RNA polymerase which catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.", "evidence": [ { "database": "UniProtKB", "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14#function" }, { "database": "UniProtKB", "id": "RU369086", "url": "https://www.uniprot.org/uniprotkb/RU369086#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLR1F", "url": "https://www.uniprot.org/uniprotkb/F1SC14", "locus": { "chromosome": "9", "start_pos": 88760398, "end_pos": 88785802, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025298", "url": "https://www.ensembl.org/id/ENSSSCG00000025298" } ] } } ], "crossref": [ { "id": "F1SC14", "url": "https://alphafold.ebi.ac.uk/entry/F1SC14", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025298", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025298", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04328", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04328", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR005576", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005576", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LWEEEPK", "url": "https://omabrowser.org/oma/group/LWEEEPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12709", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12709", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12709:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12709:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03876", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03876", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17875", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17875", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5250924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73762", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73762", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73772", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73863", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73863", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC14-1", "url": "https://www.uniprot.org/uniprotkb/F1SC14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFEVFRLDSDAAGVFCIRGKVNVSSLQTKCPAIPEVTETATEEAAVEKPPKKKKKKKTDPEPCEAEDGTTELTDFVDVTIKEETDSQINNIVNGLLEKEPKKKKKKKKKHQEDQDQDPVFQGSDSSGYQSDHKKKKKKRKEAEFTPLSEHAPKKKREK", "length": 335, "header": "tr|F1SC14-1|F1SC14_PIG Isoform 1 of DNA-directed RNA polymerase subunit OS=Sus scrofa OX=9823 GN=POLR1F PE=3 SV=2 CANONICAL=F1SC14-1" }, "isoforms": [ { "isoform_ac": "F1SC14-1", "url": "https://www.uniprot.org/uniprotkb/F1SC14/entry#F1SC14-1", "sequence": { "sequence": "MAAGCSEASRPKAASEGPGVGPAGVLPCLELPTYAAACALVSSRYSCLVAGPHRRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGTINKVSSSHIGCLVHGCFNASIPKPEQMPAEQWQTLEINVGDELEFEVFRLDSDAAGVFCIRGKVNVSSLQTKCPAIPEVTETATEEAAVEKPPKKKKKKKTDPEPCEAEDGTTELTDFVDVTIKEETDSQINNIVNGLLEKEPKKKKKKKKKHQEDQDQDPVFQGSDSSGYQSDHKKKKKKRKEAEFTPLSEHAPKKKREK", "length": 335, "header": "tr|F1SC14-1|F1SC14_PIG Isoform 1 of DNA-directed RNA polymerase subunit OS=Sus scrofa OX=9823 GN=POLR1F PE=3 SV=2 CANONICAL=F1SC14-1" }, "locus": { "chromosome": "9", "start_pos": 88785770, "end_pos": 88762463, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030736.3", "url": "https://www.ensembl.org/id/ENSSSCT00000030736.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026510.1", "url": "https://www.ensembl.org/id/ENSSSCP00000026510.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5250924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "resource": "Reactome", "description": "B-WICH complex positively regulates rRNA expression" }, { "id": "R-SSC-73762", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73762", "resource": "Reactome", "description": "RNA Polymerase I Transcription Initiation" }, { "id": "R-SSC-73772", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "resource": "Reactome", "description": "RNA Polymerase I Promoter Escape" }, { "id": "R-SSC-73863", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73863", "resource": "Reactome", "description": "RNA Polymerase I Transcription Termination" } ], "orthologs": [ { "uniprot_canonical_ac": "D4ADH7-1", "protein_name": "DNA-directed RNA polymerase subunit", "gene_name": "Polr1f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAGSVESQRPKAASERPVAGQAGILPCLELPSYAAACALVSSRYSCLVAAPHRRHIALSPRYLSRKRTGIREQLDAELLRYSESLLGVPIAYDNIRVVGELGDIYDDQGHIHLNIEADFVIFCPKPGQKLMGTVNKVSSSHIGCLVHGCFNASIPKPEQMSYEEWQTLEINVGDELEFDVFRLDSDSAGVFCIRGKLNTTSLQHKGSVVSEDVEETVIEEVVEKIPKKKKKKDKDREVCATVESVTEVADVTDAAAEDEAGLPCSDDVNDFFEEEPKKKKKKKKRHQEDQDPIFQASDSSGYQSDHKKKKKKRKHSEEAN", "length": 321 }, "evidence": [ { "id": "F1SC14", "url": "https://omabrowser.org/oma/group/F1SC14/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3B726-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA43", "gene_name": "POLR1F", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGCSEAPRPAAASDGSLVGQAGVLPCLELPTYAAACALVNSRYSCLVAGPHQRHIALSPRYLNRKRTGIREQLDAELLRYSESLLGVPIAYDNIKVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQKLMGIVNKVSSSHIGCLVHGCFNASIPKPEQLSAEQWQTMEINMGDELEFEVFRLDSDAAGVFCIRGKLNITSLQFKRSEVSEEVTENGTEEAAKKPKKKKKKKDPETYEVDSGTTKLADDADDTPMEESALQNTNNANGIWEEEPKKKKKKKKHQEVQDQDPVFQGSDSSGYQSDHKKKKKKRKHSEEAEFTPPLKCSPKRKGKSNFL", "length": 338 }, "evidence": [ { "id": "F1SC14", "url": "https://omabrowser.org/oma/group/F1SC14/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q55FA4-1", "protein_name": "Probable DNA-directed RNA polymerase I subunit RPA43", "gene_name": "rpa43", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTSKIVSVNPLIKPVENCFEEMKVQLSLQLPPMDTQSLCSGTKSMLDRLVFKYKTELGGIIISYYDVIHTDKEAKIFYDSPYLGMNIHVKFLVFKPFKDQILNGVVKRVSTTHISLLVFGTISASIPKSNIPKSFAFDHSSNMFMNKQTKATISVGTKIAFKVIDVSADRHNIGIQGDMTDLTSTGIIGFDENQSLQFGSQYETPNKNVKNNKYNNNNNNNNNGNNNTTLINTENNNNITKFDDDSEKESEEEPKPIIIKEEPKIVSVKVESKKVVVKEEEQKSSKKDKDIKKEKESKKRKKDSSDESDESEEDKKKKSTKKEKESSSKKSSKKVKVESSSESSEDEKEKKKKKKK", "length": 356 }, "evidence": [ { "id": "F1SC14", "url": "https://omabrowser.org/oma/group/F1SC14/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q78WZ7-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA43", "gene_name": "Polr1f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAGSVESQRSQAASERPVAGQAGVLPCLELPSYAAACALVGSRYSCLVAAPHRRHIALSPRYLSRKRTGIREQLDAELLRYSESLLGVPIAYDNIRVVGELGDIYDDQGHIHLNIEADFVIFCPEPGQTLMGTVNKVSSSHIGCLVHGCFNASIPKPEQMSYEEWQTLEIHVGDELEFDVFRLDSDSAGVFCIRGKLSTTSLQLKHSAVSEDVAETVVEEVVEKTPKKKKKKKDKDTDTCGTVDSVTEVADVTDVTPQEETDIPCSDNVNDFFEEEPKKKKKKKKRHQEDQDPIFQASDSSGYQSDHNKKKKKRKHSEEANFESPKKRQ", "length": 330 }, "evidence": [ { "id": "F1SC14", "url": "https://omabrowser.org/oma/group/F1SC14/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14" } ], "pmid": "" }, { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14" } ], "pmid": "" }, { "name": "RNA polymerase I complex", "id": "GO:0005736", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005736", "evidence": [ { "database": "UniProtKB", "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "transcription elongation by RNA polymerase I", "id": "GO:0006362", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006362", "evidence": [ { "database": "UniProtKB", "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14" } ], "pmid": "" }, { "name": "DNA-templated transcription initiation", "id": "GO:0006352", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006352", "evidence": [ { "database": "UniProtKB", "id": "F1SC14", "url": "https://www.uniprot.org/uniprotkb/F1SC14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SC14-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 335, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SC14-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SC14" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SC14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC14" }, { "id": "PF03876", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03876" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNA polymerase Rpb7-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 55, "end_pos": 110, "start_aa": "Arg", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SC14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC14" }, { "id": "PF17875", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17875" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RPA43 OB", "eco_id": "ECO_0000259", "start_pos": 125, "end_pos": 253, "start_aa": "Pro", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 152, "end_pos": 154 }, { "start_pos": 199, "end_pos": 201 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SC23-1", "uniprot_ac": "F1SC23", "uniprot_id": "F1SC23_PIG", "mass": { "chemical_mass": 63593.0, "monoisotopic_mass": 63593.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF274", "type": "recommended", "evidence": [ { "id": "F1SC23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ] } ], "protein_names": [ { "name": "Zinc finger protein 274", "type": "synonym", "evidence": [ { "id": "F1SC23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC23/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF274", "url": "https://www.uniprot.org/uniprotkb/F1SC23", "locus": { "chromosome": "6", "start_pos": 62859304, "end_pos": 62833585, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003998", "url": "https://www.ensembl.org/id/ENSSSCG00000003998" } ] } } ], "crossref": [ { "id": "F1SC23", "url": "https://alphafold.ebi.ac.uk/entry/F1SC23", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003998", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003998", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC23-1", "url": "https://www.uniprot.org/uniprotkb/F1SC23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLDLEQKSLYREVLLENYRNLVSVEHQLSKPDVVSQLEEEEELWSVERGIPQDTFSECPEAHLDPQFDPFPAESPLMKIEVVEVLTLNQEAARPRNAQIRALYAEDEALSPGILREPTQHLDTHPADPETARQRFREFRFEEAAGPREALARLRELCRQWLQPEMYSKEQMLELLVLEQFLDLLPGKLRMWVASQHPADCQEAVALVEDVTWMSEEEGECALPTQGPGSSLQTTAQHEEDVASCVTLQEPVTFLDVAVDFSREEWGLLEPTQRTEYHDVMLETLGHLVSVGWETTLESSRLAAPMLGAPEEEPARDLQVEEASGAASGAALPAGAPGGSDSAAVPVAPPQEAPLPGKPRRAGPAAAAPAGPGPSTGRGSLRPALPRKGPHRRGPRVRTGPQAPCARLSQQGGGGGGPQVTFTRIRRGSQVCRCSECGKTFSNPRYFSVHKKIHTGEKPYACQACGKAFVQSSSLTQHQRVHTGERPFECPQCGRTFNDRSAISQHLRTHTGAKPYPCRDCGKAFRQSSHLIRHQRTHTGERPYACGKCGKAFTQSSHLIGHQKTHSAARCRKKQPAS", "length": 577, "header": "tr|F1SC23-1|F1SC23_PIG Isoform 1 of Zinc finger protein 274 OS=Sus scrofa OX=9823 GN=ZNF274 PE=3 SV=3 CANONICAL=F1SC23-1" }, "isoforms": [ { "isoform_ac": "F1SC23-1", "url": "https://www.uniprot.org/uniprotkb/F1SC23/entry#F1SC23-1", "sequence": { "sequence": "MLDLEQKSLYREVLLENYRNLVSVEHQLSKPDVVSQLEEEEELWSVERGIPQDTFSECPEAHLDPQFDPFPAESPLMKIEVVEVLTLNQEAARPRNAQIRALYAEDEALSPGILREPTQHLDTHPADPETARQRFREFRFEEAAGPREALARLRELCRQWLQPEMYSKEQMLELLVLEQFLDLLPGKLRMWVASQHPADCQEAVALVEDVTWMSEEEGECALPTQGPGSSLQTTAQHEEDVASCVTLQEPVTFLDVAVDFSREEWGLLEPTQRTEYHDVMLETLGHLVSVGWETTLESSRLAAPMLGAPEEEPARDLQVEEASGAASGAALPAGAPGGSDSAAVPVAPPQEAPLPGKPRRAGPAAAAPAGPGPSTGRGSLRPALPRKGPHRRGPRVRTGPQAPCARLSQQGGGGGGPQVTFTRIRRGSQVCRCSECGKTFSNPRYFSVHKKIHTGEKPYACQACGKAFVQSSSLTQHQRVHTGERPFECPQCGRTFNDRSAISQHLRTHTGAKPYPCRDCGKAFRQSSHLIRHQRTHTGERPYACGKCGKAFTQSSHLIGHQKTHSAARCRKKQPAS", "length": 577, "header": "tr|F1SC23-1|F1SC23_PIG Isoform 1 of Zinc finger protein 274 OS=Sus scrofa OX=9823 GN=ZNF274 PE=3 SV=3 CANONICAL=F1SC23-1" }, "locus": { "chromosome": "6", "start_pos": 62858670, "end_pos": 62835070, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004421.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004421.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004320.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004320.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SC23", "url": "https://www.uniprot.org/uniprotkb/F1SC23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SC23-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 577, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SC23-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SC23" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SC23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC23" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 431, "end_pos": 458, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SC23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC23" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 56, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SC23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC23" }, { "id": "PS50804", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50804" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SCAN box", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 210, "start_aa": "Arg", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SC52-1", "uniprot_ac": "F1SC52", "uniprot_id": "F1SC52_PIG", "mass": { "chemical_mass": 89079.0, "monoisotopic_mass": 89079.0 }, "refseq": { "ac": "XP_020933392", "name": "cadherin-22", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933392" }, "gene_names": [ { "name": "CDH22", "type": "recommended", "evidence": [ { "id": "F1SC52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ] }, { "name": "CDH22", "type": "synonym", "evidence": [ { "id": "XP_020933392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933392" } ] } ], "protein_names": [ { "name": "Cadherin-22", "type": "recommended", "evidence": [ { "id": "F1SC52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC52/entry#names_and_taxonomy" } ] }, { "name": "Pituitary and brain cadherin", "type": "synonym", "evidence": [ { "id": "F1SC52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC52/entry#names_and_taxonomy" } ] }, { "name": "cadherin-22", "type": "synonym", "evidence": [ { "id": "XP_020933392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933392" } ] } ], "function": [ { "annotation": "Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. PB-cadherins may have a role in the morphological organization of pituitary gland and brain tissues.", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52#function" }, { "database": "UniProtKB", "id": "ARBA00057645", "url": "https://www.uniprot.org/uniprotkb/ARBA00057645#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDH22", "url": "https://www.uniprot.org/uniprotkb/F1SC52", "locus": { "chromosome": "17", "start_pos": 48339694, "end_pos": 48413799, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007439", "url": "https://www.ensembl.org/id/ENSSSCG00000007439" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007439", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007439", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153556", "url": "https://www.ncbi.nlm.nih.gov/gene/100153556", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153556", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153556", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GAWAMHT", "url": "https://omabrowser.org/oma/group/GAWAMHT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SC52", "url": "https://www.orthodb.org/?gene=F1SC52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF311", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF311", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020933392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC52-1", "url": "https://www.uniprot.org/uniprotkb/F1SC52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPRLDGRGLRAGAALSPALLLLLLLLLLPPPPQLPGPLWAAGTPAPSEPRAAQDGAPGTGRVKRGWVWNQFFVVEEYTGTEPLYVGKIHSDSDEGDGAIKYTISGEGAGTIFLIDELTGDIHAMERLDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQDINDSEPRFLHGPYIGSVAELSPTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKTGVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSGSTTVTIVVTDVNDNPPRFPQKMYQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLREESGSGGHVFKVTTDSDTQEAIIVVQKRLDFESQPVHTVVLEALNKFVDPRFADLGTFRDQAIVRVAVTDVDEPPEFQPPSGLLEVQEDAQVGSLVGVVTARDPDAANRPVRYAIDRDSDLDQIFDIDADTGAIVTGKGLDRETAGWHNITVLAMEADNHAQLSRASLRIRILDVNDNPPELATPYEAAVCEDAKPGQLIQTISVVDRDEPQGGHRFYFRLVPEAPSNPHFSLLDIQDNTAAVHTQHLGFNRQEQDVFFLPILVVDSGPPTLSSTGTLTIRICGCDSSGAIQSCNTTAFVMAASLSPGALIALLVCVLILVVLVLLILTLRRHHKSHLSSDEDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGGDGSGGGGPGGDAGSPPQAHLPSERHSLPQGPPSPEPDFSVFRDFISRKVALADGDLSVPPYDAFQTYAFEGADSPAGSLSSLHSGSSGSEQDFAFLSSWGPRFRPLAALYAGHRPDEEAPAS", "length": 825, "header": "tr|F1SC52-1|F1SC52_PIG Isoform 1 of Cadherin-22 OS=Sus scrofa OX=9823 GN=CDH22 PE=4 SV=3 CANONICAL=F1SC52-1" }, "isoforms": [ { "isoform_ac": "F1SC52-1", "url": "https://www.uniprot.org/uniprotkb/F1SC52/entry#F1SC52-1", "sequence": { "sequence": "MRPRLDGRGLRAGAALSPALLLLLLLLLLPPPPQLPGPLWAAGTPAPSEPRAAQDGAPGTGRVKRGWVWNQFFVVEEYTGTEPLYVGKIHSDSDEGDGAIKYTISGEGAGTIFLIDELTGDIHAMERLDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQDINDSEPRFLHGPYIGSVAELSPTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKTGVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSGSTTVTIVVTDVNDNPPRFPQKMYQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLREESGSGGHVFKVTTDSDTQEAIIVVQKRLDFESQPVHTVVLEALNKFVDPRFADLGTFRDQAIVRVAVTDVDEPPEFQPPSGLLEVQEDAQVGSLVGVVTARDPDAANRPVRYAIDRDSDLDQIFDIDADTGAIVTGKGLDRETAGWHNITVLAMEADNHAQLSRASLRIRILDVNDNPPELATPYEAAVCEDAKPGQLIQTISVVDRDEPQGGHRFYFRLVPEAPSNPHFSLLDIQDNTAAVHTQHLGFNRQEQDVFFLPILVVDSGPPTLSSTGTLTIRICGCDSSGAIQSCNTTAFVMAASLSPGALIALLVCVLILVVLVLLILTLRRHHKSHLSSDEDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGGDGSGGGGPGGDAGSPPQAHLPSERHSLPQGPPSPEPDFSVFRDFISRKVALADGDLSVPPYDAFQTYAFEGADSPAGSLSSLHSGSSGSEQDFAFLSSWGPRFRPLAALYAGHRPDEEAPAS", "length": 825, "header": "tr|F1SC52-1|F1SC52_PIG Isoform 1 of Cadherin-22 OS=Sus scrofa OX=9823 GN=CDH22 PE=4 SV=3 CANONICAL=F1SC52-1" }, "locus": { "chromosome": "17", "start_pos": 48413600, "end_pos": 48340415, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008143.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008143.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007927.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007927.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153556", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153556", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YN20-1", "protein_name": "Cadherin-22", "gene_name": "CDH22", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAKGLQGCCWTMLLLLCAIQELGAWAMHTATESPGLGQPGDPTLLASGRVKRGWVWNQFFVVEEYTGTEPLYVGKIHSDSDEGDGSIKYTISGEGAGTIFLIDEITGDIHATERLDREQKTFYTLRAQARDRQTDQLLEPESEFIIKVQDINDSEPRFLEGPYIGSVAELSPIGTSVMQVMASDADDPTYGSSARIVYSVLEGEQHFTVDSKTGVIRTAVADLDRETQDRYEVVIRATDMAGQLGGLSGSTTVTIVVTDVNDNPPRFPQKMYQFSIIETAPVGTAIGRVKAEDSDVGENTDMTYQMKDEEGVEMFKVTTDSNTQEAVITVQKPLDYESKKVHTVVVEALNKFVDPRFVDLGTFRDQTIVRVSVLDVDEPPEFWPPSNTMEVQEDAHIGSIVGVVTALDPDTANHPVRYAIDRSTDTERIFDIDANTGAIVTGKVLDRETAGWHNITVLAMEADNHSQVSRASLRIRILDVNDNPPELATPYEAAVCEDAKPGQLIQTISVVDRDEPQGGHRFYFTLAPEATNNHHFSLLDVKDNTAAVHTQRVGFNRQEQDVYLLPILVVDSGPPALSSTGTLTIRVCGCDSTGAIQSCNSTAYAMSATLSPGALIALLVCVLILIVLVLLILTLKRHHKSHLTSEDDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFSEIKGGDGGGGPGEGGNPASERHALPQWVQSPDLDFSVFRDYICRKVEQADEDLSVPPYDSFQTYAFEGSDSPVPSLSSINTWSSGSEQDFSYLGGWGPRFRQLAALYAGRRGEHHPAPTRTHLRPTQRHPRSKLHATPQRKT", "length": 825 }, "evidence": [ { "id": "F1SC52", "url": "https://omabrowser.org/oma/group/F1SC52/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q63315-1", "protein_name": "Cadherin-22", "gene_name": "Cdh22", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRPRPAGALRAGAALSPVLLLLLLLQLLGHLWAASTPAPSSLSPGTQQDNQLGAGRVKRGWVWNQFFVVEEYTGTEPLYVGKIHSDSDEGDGTIKYTISGEGAGTIFLIDELTGDIHATERLDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQDINDSEPRFLHGPYIGSVAELSPTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKTGVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSGSTTVTIVVTDVNDNPPRFPQKMYQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLREESGSGGDAFKVTTDSDTQEAIIVVQKHLDFESQQVHTVVLEALNKFVDPRFADLGTFRDQAIVRVAVTDVDEPPEFRPPSGLLEVQEDAQVGSLVGVVTARDPDAANRPVRYAIDRDSDLEQIFDIDADTGAIVTGKGLDRETAGWHNITVLAMEADNHAQLSRASLRIRILDVNDNPPELATPYEAAVCEDAKPGQLIQTISVVDRDEPQGGHRFYFRLVPEEPSNPHFSLLDIEDNTAAVHTQHVGFNRQEQDVFLLPILVVDSGPPTLSSTGTLTIRICGCDSSGTIQSCNTTAFVMAASLSPGALIALLVCVLILVVLALLILTLRRHHKSHLSSDVDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGGDPGGGAASPPQAASSSERHSLPRGPSSPEPDFSVFRDFISRKVALADADLSVPPYDAFQTYAFEGAGSPAASLSSLHSGSTGSEQDFAFLRAWGPRFRPLAALYAGHRGDDEAPAS", "length": 813 }, "evidence": [ { "id": "F1SC52", "url": "https://omabrowser.org/oma/group/F1SC52/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9UJ99-1", "protein_name": "Cadherin-22", "gene_name": "CDH22", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPRPEGRGLRAGVALSPALLLLLLLPPPPTLLGRLWAAGTPSPSAPGARQDGALGAGRVKRGWVWNQFFVVEEYTGTEPLYVGKIHSDSDEGDGAIKYTISGEGAGTIFLIDELTGDIHAMERLDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQDINDSEPRFLHGPYIGSVAELSPTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKTGVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSGSTTVTIVVTDVNDNPPRFPQKMYQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLKDESSSGGDVFKVTTDSDTQEAIIVVQKRLDFESQPVHTVILEALNKFVDPRFADLGTFRDQAIVRVAVTDVDEPPEFRPPSGLLEVQEDAQVGSLVGVVTARDPDAANRPVRYAIDRESDLDQIFDIDADTGAIVTGKGLDRETAGWHNITVLAMEADNHAQLSRASLRIRILDVNDNPPELATPYEAAVCEDAKPGQLIQTISVVDRDEPQGGHRFYFRLVPEAPSNPHFSLLDIQDNTAAVHTQHVGFNRQEQDVFFLPILVVDSGPPTLSSTGTLTIRICGCDSSGTIQSCNTTAFVMAASLSPGALIALLVCVLILVVLVLLILTLRRHHKSHLSSDEDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGGDGGGSAGGGAGGGSGGGAGSPPQAHLPSERHSLPQGPPSPEPDFSVFRDFISRKVALADGDLSVPPYDAFQTYAFEGADSPAASLSSLHSGSSGSEQDFAYLSSWGPRFRPLAALYAGHRGDDEAQAS", "length": 828 }, "evidence": [ { "id": "F1SC52", "url": "https://omabrowser.org/oma/group/F1SC52/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9WTP5-1", "protein_name": "Cadherin-22", "gene_name": "Cdh22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRPRPEGALRAGAALSPVLLFLLLLPLLGHLWAASTPAPSSLSPGAQEDNQLGAGRVKRGWVWNQFFVVEEYTGTEPLYVGKIHSDSDEGDGTIKYTISGEGAGTIFLIDELTGDIHATERLDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQDINDSEPRFLHGPYIGSVAELSPTGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKTGVIRTAVPDLDRESQERYEVVIQATDMAGQLGGLSGSTTVTIVVTDVNDNPPRFPQKMYQFSIQESAPIGTAVGRVKAEDSDVGENTDMTYHLREESGSGGDAFKVTTDSDTQEAIIVVQKHLDFESQQVHTVVLEALNKFVDPRFADLGTFRDQAIVRVAVTDVDEPPEFRPPSGLLEVQEDAQVGSLVGVVTARDPDAANRPVRYAIDRDSDLEQIFDIDADTGAIVTGKGLDRETAGWHNITVLAMEADNHAQLSRASLRIRILDVNDNPPELATPYEAAVCEDAKPGQLIQTISVVDRDEPQGGHRFYFRLVPEAPSNPHFSLLDIEDNTAAVHTQHVGFNRQEQDVFLLPILVVDSGPPTLSSTGTLTIRICGCDSSGTIQSCNTTAFVMAASLSPGALIALLVCVLILVVLALLILTLRRHHKSHLSSDVDEDMRDNVIKYNDEGGGEQDTEAYDMSALRSLYDFGELKGGDPGGGAASPPQAASSSERHSLPRGPSSPEPDFSVFRDFISRKVALADADLSVPPYDAFQTYAFEGAGSPAASLSSLHSGSTGSEQDFAFLRAWGPRFRPLAALYAGHRGDDEAPAS", "length": 813 }, "evidence": [ { "id": "F1SC52", "url": "https://omabrowser.org/oma/group/F1SC52/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" }, { "name": "catenin complex", "id": "GO:0016342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016342", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" }, { "name": "cell-cell junction assembly", "id": "GO:0007043", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007043", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" }, { "name": "adherens junction organization", "id": "GO:0034332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034332", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" }, { "name": "calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules", "id": "GO:0016339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016339", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" }, { "name": "cell-cell adhesion mediated by cadherin", "id": "GO:0044331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044331", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "F1SC52", "url": "https://www.uniprot.org/uniprotkb/F1SC52" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 615, "end_pos": 617, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SC52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC52" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 91, "end_pos": 171, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 165, "end_pos": 167 }, { "start_pos": 469, "end_pos": 471 }, { "start_pos": 615, "end_pos": 617 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SC59-1", "uniprot_ac": "F1SC59", "uniprot_id": "F1SC59_PIG", "mass": { "chemical_mass": 80491.0, "monoisotopic_mass": 80491.0 }, "refseq": { "ac": "XP_020933033", "name": "phosphorylated CTD-interacting factor 1 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933033" }, "gene_names": [ { "name": "PCIF1", "type": "recommended", "evidence": [ { "id": "F1SC59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ] }, { "name": "PCIF1", "type": "synonym", "evidence": [ { "id": "XP_020933033", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933033" } ] } ], "protein_names": [ { "name": "mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase", "type": "recommended", "evidence": [ { "id": "F1SC59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC59/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.62", "type": "synonym", "evidence": [ { "id": "F1SC59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC59/entry#names_and_taxonomy" } ] }, { "name": "Cap-specific adenosine methyltransferase", "type": "synonym", "evidence": [ { "id": "F1SC59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC59/entry#names_and_taxonomy" } ] }, { "name": "Phosphorylated CTD-interacting factor 1", "type": "synonym", "evidence": [ { "id": "F1SC59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC59/entry#names_and_taxonomy" } ] }, { "name": "phosphorylated CTD-interacting factor 1 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_020933033", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933033" } ] } ], "function": [ { "annotation": "Cap-specific adenosine methyltransferase that catalyzes formation of N(6),2'-O-dimethyladenosine cap (m6A(m)) by methylating the adenosine at the second transcribed position of capped mRNAs. Recruited to the early elongation complex of RNA polymerase II (RNAPII) via interaction with POLR2A and mediates formation of m6A(m) co-transcriptionally.", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59#function" }, { "database": "UniProtKB", "id": "ARBA00055394", "url": "https://www.uniprot.org/uniprotkb/ARBA00055394#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PCIF1", "url": "https://www.uniprot.org/uniprotkb/F1SC59", "locus": { "chromosome": "17", "start_pos": 48132620, "end_pos": 48120599, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007433", "url": "https://www.ensembl.org/id/ENSSSCG00000007433" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007433", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007433", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153535", "url": "https://www.ncbi.nlm.nih.gov/gene/100153535", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ANENHRS", "url": "https://omabrowser.org/oma/group/ANENHRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21727", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21727", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21727:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21727:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12237", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12237", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020933033", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933033", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC59-1", "url": "https://www.uniprot.org/uniprotkb/F1SC59-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANENHGSPREEASLLSHSPGTSNQNQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTGPSVPSSPSIPGTPTLKIWGTSSEDKQQAALLRPTELYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNIPEEVEAPEVEPRLVYCYPVRLAVSAPPMPSVEMHMENSVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFSPLSGSFEANPPFCEELMDAMVSHFERLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLPAFEHEYRSGSQHVCKKEEMHYKAVHNTAVLFLQNDPGFAKWGPTPERLQELSAAYRQSGRSHGSGSSSSSSEAKDRDSGREQGPSREPHPT", "length": 703, "header": "tr|F1SC59-1|F1SC59_PIG Isoform 1 of mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase OS=Sus scrofa OX=9823 GN=PCIF1 PE=1 SV=3 CANONICAL=F1SC59-1" }, "isoforms": [ { "isoform_ac": "F1SC59-1", "url": "https://www.uniprot.org/uniprotkb/F1SC59/entry#F1SC59-1", "sequence": { "sequence": "MANENHGSPREEASLLSHSPGTSNQNQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTGPSVPSSPSIPGTPTLKIWGTSSEDKQQAALLRPTELYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNIPEEVEAPEVEPRLVYCYPVRLAVSAPPMPSVEMHMENSVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFSPLSGSFEANPPFCEELMDAMVSHFERLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLPAFEHEYRSGSQHVCKKEEMHYKAVHNTAVLFLQNDPGFAKWGPTPERLQELSAAYRQSGRSHGSGSSSSSSEAKDRDSGREQGPSREPHPT", "length": 703, "header": "tr|F1SC59-1|F1SC59_PIG Isoform 1 of mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase OS=Sus scrofa OX=9823 GN=PCIF1 PE=1 SV=3 CANONICAL=F1SC59-1" }, "locus": { "chromosome": "17", "start_pos": 48131616, "end_pos": 48124173, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008136.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008136.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007920.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007920.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 137, "start_aa": "Thr", "end_pos": 137, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr137", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 593, "start_aa": "Thr", "end_pos": 593, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr593", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 656, "start_aa": "Thr", "end_pos": 656, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr656", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IKJ1-1", "protein_name": "mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase", "gene_name": "pcif1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSENHTTIKADSALVMSPTGSTSQAAPFSPSTSKPIQELPDELIQAGWSKCWSKRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNAAPASGEANADAGLGNGQRKRHPSEDASQAGPNSFKRPKVEIPATPTTPTVPISPSTPGVKPWVNTTTDEKQGQASTPAPAPYRPSVVYWDLDIQTNAVIRERAPADHLPPHPEIELQRAQLTTKLRQHYHELCSQREGIEPPRESFNRWLLERKVVDKGLDPLLPSECDPVISPSMFREIMNDIPIRLSRIKYKEEARKLLFKYAEAAKKMIDSRNATPESRKVVKWNVEDTMNWLRRDHSASKEDYMDRLEHLRKQCGPHVASVAKDSVEGICSKIYHISAEYVRRIRQAHLTLLKECNISVDGTESAEVQDRLVYCYPVRLSIPAPPQTRVELHFENDIACLRFKGEMVKVSRGHFNKLELLYRYSCIDDPRFEKFLSRVWCLIKRYQVMFGSGVNEGSGLQGSLPVPVFEALNKQFGVTFECFASPLNCYFKQFCSAFPDIDGFFGSRGPFLSFSPASGSFEANPPFCEELMDAMVTHFEDLLGRSSEPLSFIIFVPEWRDPPTPALTRMEASRFRRHQMTVPAFEHEYRSGSQHICKREEIYYKAIHGTAVIFLQNNAGFAKWEPTTERIQELLAAYKVSGRSLPSPGPSSTNTGEKDSKPAPERTAPSQDNSSPVDKTAQDTTNT", "length": 721 }, "evidence": [ { "id": "F1SC59", "url": "https://omabrowser.org/oma/group/F1SC59/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0YWB0-1", "protein_name": "mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase", "gene_name": "PCIF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MANENHGSPAEEASLMSHSPGTSNQNQPSSPKPMRLVQDLPDELVQAGWEKCWSKRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNAAPMPLESGMVETSVESKQRKRRFSEEVPPSGNSVKKPKSDIPGNPAAQPVPSSPSIPGSSVLKAWCVSPEDKQQAALLRPTEVYWDLDIQTNAVIKQRAPSEVLSPHPEVELLRSQLILKLRQHYRELCQQREGIDPPRESFNRWMLERKVVDKGTDPLLPSDCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAAKRLIESRSASPDSRKVVKWNVEDTFSWLRRDHSASKEDYMDRLEHLRKQCGPHVSAAAKDSVEGICSKIYYISLEYVKRIREKHLAILKENNISAEVEAPEVQDRLVYCYPVRLAIPSPPLPSVEMHMENNVACVRYKGEMVKVSRNYFSKLWLLYRYSCIDDSGFEKFLPRVWCLLRRYQMMFGVGLYEGTGLQGALPVHVFEALHKLFGVSFECFASPLNCYFKQYCSAFLDTDGYFGSRGPCLDFFPISGSFEANPPFCEELMDAMVSHFEKLLESSSEPLSFIVFIPEWRDPPTPALTRMEQSKFKRHQLILSAFDHEYRSGSQHVCKKEEMYYKAVHNTAVLFLQNSAGFAKWEPTPERLQELVAAYKHSGRTLSSSSSSSSSSTSSTDKERELGREQSSSRETNAN", "length": 707 }, "evidence": [ { "id": "F1SC59", "url": "https://omabrowser.org/oma/group/F1SC59/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LF07-1", "protein_name": "mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase", "gene_name": "Pcif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANENHGSPREEASLLSHSPGTSNQNQPCSPKPVRLVQDLPEELVHAGWEKCWSRRESRPYYFNRFTNQSLWEMPVLGQHDVLSDPLGLNATPLPQDSTLVETPPVENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTSQSVPSSPSIPGTPILKIWGASTEDKQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGCDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKEHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNIPEEVEASELEPRLVYCYPVRLAVSAPPMPSVEMHMENSVVCIRYKGEMVKVSRSYFSKLWLLYRYSCVDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFTPLSGSFEANPPFCEELMDAMVSHFEKLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLSAFEHEYRSGSQHICKKEEMHYKAVHNTAVLFLQNDPGFAKWGPTPERLQELTAAYKQSGRSHGSSSSSSSSSSEAKDRDSGREQGPSREPHPT", "length": 704 }, "evidence": [ { "id": "F1SC59", "url": "https://omabrowser.org/oma/group/F1SC59/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MJ19-1", "protein_name": "mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase", "gene_name": "PCIF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MANENHGSPREEASLLSHSPGTSSQSQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPLAENKPRKRQLSEEQPSGNGVKKPKIEIPMTPTGPSVPSSPSIPGTPTLKIWGTSPEDKQQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNIPEEVEAPEVEPRLVYCYPVRLAVPAPPMPSVEMHVENSVVCVRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFSPLSGSFEANPPFCEELMDAMVSHFEKLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLPAFEHEYRSGSQHVCKKEEMHYKAVHNTAVLFLQNEPGFAKWGPTPERLQELSAACRQSGRSHGSSGSASSEAKDRDSGRDQGPSREPHST", "length": 702 }, "evidence": [ { "id": "F1SC59", "url": "https://omabrowser.org/oma/group/F1SC59/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P59114-1", "protein_name": "mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase", "gene_name": "Pcif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANENHGSPREGASLLSHSPGTSSQSQPCSPKPVRLVQDLPEELVHAGWEKCWSRRESRPYYFNRFTNQSLWEMPVLGQHDVLSDPLGLNATPLPQDSSLVETPPVENKSRKRQLSEEQPSGNGVKKPKIEIPVTPTSQSVPSSPSIPGTPTLKIWGSSTEDKQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPDVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGCDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKEHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAVLKENNIPEEVEASELEPRLVYCYPVRLAVSAPPMPSVEMHVENSVVCIRYKGEMVKVSRSYFSKLWLLYRYSCVDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFETLHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFTPLSGSFEANPPFCEELMDAMVSHFEKLLESSAEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLPAFEHEYRSGSQHICKKEEMHYKAVHNTAVLFLQNGPGFAKWGPTPERLQELTAAYKQSGRSHGSSSSSSSSSSSSEAKDRDSGREQGPSREPHPT", "length": 706 }, "evidence": [ { "id": "F1SC59", "url": "https://omabrowser.org/oma/group/F1SC59/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H4Z3-1", "protein_name": "mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase", "gene_name": "PCIF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MANENHGSPREEASLLSHSPGTSNQSQPCSPKPIRLVQDLPEELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKPRKRQLSEEQPSGNGVKKPKIEIPVTPTGQSVPSSPSIPGTPTLKMWGTSPEDKQQAALLRPTEVYWDLDIQTNAVIKHRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILKENNISEEVEAPEVEPRLVYCYPVRLAVSAPPMPSVEMHMENNVVCIRYKGEMVKVSRNYFSKLWLLYRYSCIDDSAFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELMDAMVSHFERLLESSPEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLILPAFEHEYRSGSQHICKKEEMHYKAVHNTAVLFLQNDPGFAKWAPTPERLQELSAAYRQSGRSHSSGSSSSSSSEAKDRDSGREQGPSREPHPT", "length": 704 }, "evidence": [ { "id": "F1SC59", "url": "https://omabrowser.org/oma/group/F1SC59/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VPB7-1", "protein_name": "Phosphorylated CTD-interacting factor 1", "gene_name": "Pcif1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAANNNNSIIHNLGAGTEGLLSSVIASTGTPGMGSSPVPSRASSSSASSAAQSAWDQLTASASNNMSPSPTAGAPTVTGPILPDNLGVGAGSSPVASCSSPSTPTKTHAPSPLESMGHTPQGPPTLGPGGYGEELTAELVNQGWRKFWSKRENRPYYWNKVTGESLWEMPGTRPFDPLTDPLGICHAGGPTPIIPNMHQQQQHQHHHLKRRPSDDMHIHPNQHHMGGGPPMKKFVLAGPWDLEVCTNAVIVERPPTLLPQPHPEVEALRAAFTMKLLKTYEDLCMRRENIKAPRDSFNRWLMERKVIDTGCDPLLPSSCMPEISSSMYREIMSDIPIKIVKPKFTGDARKQLSRYAEAAKQIIESRSAPAESKKVVKWNVEDTFQWLRRTVGASYEDFQDRLAHLKRQCEPHLVETVKSSVETLCVKIYHLSADHARKIRERHSQLLKEHGIPEPTPPPPPPHLKKVWCYPIQFAVPSPRMPTIEYLQDRDHMIIKYTPATINQPDAQYINLTYLQKLEQLYRHNCFDDKKFDLFIGRVWCLLKRYQTFLGNALNSSQEAELTQAALPVPVFECLHRQFGVSFECFASPFNSYFRQYCSAFADTDAYFGSRGPFLDFKPVSGSFQVNPPHCEELIEASLLHIDKLLTDTMEPLSFIVFLPEWKSISKLDDSMYKRRSMVVLGMAHEYRHGYQHMLQKSDVLIKCMQGTQVVWLQNSAGYARWGPNEIRVEALREAFRPQRDRERERAAAAAAAAGVTSSQQSPSTPPSAASTAPTTNSCTISGVNSNSSSTATTTSTSSSPSLTTTSSSMSPLSPHTPTGNPPPQFPMTISNTSSSSNLVAASPTMSVQSDCSSPSSSTMSLSPAPASGGYPDGVTSATAAAVSITATTTTSAAGAGSAFGQANSISSSASTQAVINSAV", "length": 920 }, "evidence": [ { "id": "F1SC59", "url": "https://omabrowser.org/oma/group/F1SC59/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" }, { "name": "intercellular bridge", "id": "GO:0045171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045171", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" }, { "name": "negative regulation of translation", "id": "GO:0017148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017148", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" }, { "name": "positive regulation of translation", "id": "GO:0045727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045727", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity", "id": "GO:0016422", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016422", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" }, { "name": "S-adenosyl-L-methionine binding", "id": "GO:1904047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904047", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" }, { "name": "RNA polymerase II C-terminal domain phosphoserine binding", "id": "GO:1990269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990269", "evidence": [ { "database": "UniProtKB", "id": "F1SC59", "url": "https://www.uniprot.org/uniprotkb/F1SC59" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SC59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC59" }, { "id": "PS50020", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50020" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WW", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 77, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 137, 593, 656 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 68, "end_pos": 70 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SC81-1", "uniprot_ac": "F1SC81", "uniprot_id": "F1SC81_PIG", "mass": { "chemical_mass": 54104.0, "monoisotopic_mass": 54104.0 }, "refseq": { "ac": "XP_005671353", "name": "centrosomal protein of 55 kDa isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671353" }, "gene_names": [ { "name": "CEP55", "type": "recommended", "evidence": [ { "id": "F1SC81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ] }, { "name": "CEP55", "type": "synonym", "evidence": [ { "id": "XP_005671353", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671353" } ] } ], "protein_names": [ { "name": "Centrosomal protein of 55 kDa", "type": "recommended", "evidence": [ { "id": "F1SC81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC81/entry#names_and_taxonomy" } ] }, { "name": "centrosomal protein of 55 kDa isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005671353", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671353" } ] } ], "function": [ { "annotation": "Plays a role in mitotic exit and cytokinesis. Recruits PDCD6IP and TSG101 to midbody during cytokinesis. Required for successful completion of cytokinesis. Not required for microtubule nucleation. Plays a role in the development of the brain and kidney.", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81#function" }, { "database": "UniProtKB", "id": "ARBA00055531", "url": "https://www.uniprot.org/uniprotkb/ARBA00055531#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CEP55", "url": "https://www.uniprot.org/uniprotkb/F1SC81", "locus": { "chromosome": "14", "start_pos": 104980689, "end_pos": 104957311, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010477", "url": "https://www.ensembl.org/id/ENSSSCG00000010477" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010477", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010477", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154549", "url": "https://www.ncbi.nlm.nih.gov/gene/100154549", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154549", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154549", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AVMAKCS", "url": "https://omabrowser.org/oma/group/AVMAKCS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SC81", "url": "https://www.orthodb.org/?gene=F1SC81", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31838", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31838", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31838:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31838:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12180", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12180", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005671353", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005671353", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC81-1", "url": "https://www.uniprot.org/uniprotkb/F1SC81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSRSPKELIKSKWGSKPSNSKSETALERFRGEIAALKTSVDEITSGKGKLTDKDRHRLLEKIRVLEAEREKNAYCLTEKDKEIQRLRDQLKAKYSTTALLEQLEEKTKEGERREQLLKSLSEETDVLKKQLSATTARLAELEGKASTLRLSQTVATSCLNPSMSEIHEMEVQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEQQKSETAAHVLPQQTKKTESEGYLQEEKQKYYNHLLVNAKKDLEVERQTVTQLNFELSEFRRKYEETQKEVQDLNQLLCLQRKADVQHLEDDRHKTEKIQRLKEENDLAREKLGEEKKRSEELLSQVQFLYTSLLKQQEEQTKVALLEQQIQACTLDFENEKLDRQNMQHQLHVILKELRKARNQITQLESLKQFREFAFTEPLVTFQGETENRGKVASPKSPTAALNESLVECPKCNIQYPATEHRDLLVHVEYCSK", "length": 464, "header": "tr|F1SC81-1|F1SC81_PIG Isoform 1 of Centrosomal protein of 55 kDa OS=Sus scrofa OX=9823 GN=CEP55 PE=4 SV=1 CANONICAL=F1SC81-1" }, "isoforms": [ { "isoform_ac": "F1SC81-1", "url": "https://www.uniprot.org/uniprotkb/F1SC81/entry#F1SC81-1", "sequence": { "sequence": "MSSRSPKELIKSKWGSKPSNSKSETALERFRGEIAALKTSVDEITSGKGKLTDKDRHRLLEKIRVLEAEREKNAYCLTEKDKEIQRLRDQLKAKYSTTALLEQLEEKTKEGERREQLLKSLSEETDVLKKQLSATTARLAELEGKASTLRLSQTVATSCLNPSMSEIHEMEVQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEQQKSETAAHVLPQQTKKTESEGYLQEEKQKYYNHLLVNAKKDLEVERQTVTQLNFELSEFRRKYEETQKEVQDLNQLLCLQRKADVQHLEDDRHKTEKIQRLKEENDLAREKLGEEKKRSEELLSQVQFLYTSLLKQQEEQTKVALLEQQIQACTLDFENEKLDRQNMQHQLHVILKELRKARNQITQLESLKQFREFAFTEPLVTFQGETENRGKVASPKSPTAALNESLVECPKCNIQYPATEHRDLLVHVEYCSK", "length": 464, "header": "tr|F1SC81-1|F1SC81_PIG Isoform 1 of Centrosomal protein of 55 kDa OS=Sus scrofa OX=9823 GN=CEP55 PE=4 SV=1 CANONICAL=F1SC81-1" }, "locus": { "chromosome": "14", "start_pos": 104979724, "end_pos": 104959632, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011465.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011465.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011166.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011166.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154549", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154549", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z768-1", "protein_name": "Centrosomal protein of 55 kDa", "gene_name": "CEP55", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNSKTTKGVIIGKWGLKSGSSRPESELEKYKQENAALRKSLEEATKGKGRAEDPERIRLLEKILCLEKEKEKYNHLLGEKDKEIQNLRDRLKSKNKNSEVSSLHSQLEEKTKEAERREQLLSSLSEEMNRLKCNLSTITAKCSEIESRTGSSQAFQEAVTNSPGSSTNHSEVEKQLKDALEKNQQWLLYDQQREAYVRGLLGRIFELEQRSEIVSQQQPKESNAEGHLQEEKQKHYDQLLQNAKSDLEAERCTVTQLKCELNEFKKKYEQRRQEIMSLNALLQSQQVVDMKDQENENKIQGEKIQILKQENESIKVQLREEKKKSEDLLSQVQLLRKSLLKQQEEHARIALLEKQIQMCTADLENEKLDRQNLKHQLNKIFKELIKAREQITRLEPLKLQECGLMEPQEDLQAAFEEKITTYDISPSLKHSNLLDESFLECPRCQVQYPTSQHRELLAHIDFCTA", "length": 465 }, "evidence": [ { "id": "F1SC81", "url": "https://omabrowser.org/oma/group/F1SC81/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7JB98-1", "protein_name": "Centrosomal protein of 55 kDa", "gene_name": "LOC113833727", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSRSPKDLIKCKWGSRPSSSKSDTALEKFKGEIAAFKTSLDEITSGKGKVTDRDKCRLLEKIQVLEAEREKNVYYLTEKDKEIQRLKDQLKARYSSSSLLEQLEEKTKECGKKQQLLESLSKETDVLKKQLSAMTKRLSELESKACTLNLSQSVPANCFNSSMSSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFELEKRKETAATLLPQQMKKTESEGYLQEEKKKYDHLLENAKKDLEVERQTVTQLRSELDEFRRKYEETQKEVEDLNQLLSSQRKADIEHLEEDRHKTEKIQRLREESSIFKGKLEEERKKSEELLSQVRILYESLLKHQEEQTRVALLEQQMQACTLDFENEKLDRQNMQHQLYVILKELRKARSQITQLESLKQLHGFAFTEQSFPIQREPESRVKVTSPKSPTAALNESLVECPNCSVQYPANEHRDLLVHVEYCTK", "length": 462 }, "evidence": [ { "id": "F1SC81", "url": "https://omabrowser.org/oma/group/F1SC81/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q4V7C8-1", "protein_name": "Centrosomal protein of 55 kDa", "gene_name": "Cep55", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRSPKDLIKSKWGSRPSSSKSDTALEKFKGEIAAFKTSLDEITNGKGKVANKDRSKLLEKIQVLEAEREKNVYYLMEKDKEIQRLKDHLRSRYSSSSLLEQLEEKTKECEKKQQLLESLSRETDILKKQLSATTKRLSELESKASTLHLSQSVPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFELEKRTETAAASLPQQMKKTESEGYLQEEKQKYDHLLENAKKDLEVERQTVTQLRLELDEFRRKYEETQKEVEDLNQLLSSQRKADIQHLEEDKHKTEKIQKLREESSVFKGKLEEERKKSEELLSQVRILYDSLLKHQEEQSRVALLERQMQACTLDFENEKLDRQNMQHQLYVILKELRKAKSQITQLESLKQLHGFTFTEQPFPLQGEPENRVKATSPKSPTAVLNESLVECPKCSVQYPATEHRDLLVHVEYCMK", "length": 462 }, "evidence": [ { "id": "F1SC81", "url": "https://omabrowser.org/oma/group/F1SC81/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q502I3-1", "protein_name": "Centrosomal protein of 55 kDa", "gene_name": "cep55", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAKGAKETLVNKLGFKSSSSSSKSAELEVEKLKRENQQMKKSLEDMKRAGRHQHTHPDTDKARLLERILALETLREKNNQQLLGREQEITTLRQQLRSAHGEVVSSLQSQLENKQHEAEQRERQYQALVKETEDLKNKYCAVSERCDTLEKQKGSSGELAVVQEQLRDALEKNQHWLVYDQQREAYVQGVLARIKDLEAQLNEANQALQQQHKEAKSDDQSAQKVQQELEAERNKVSRMQMEVEDLQVRYEEKSREAAQAREQLLEERRREREDRKSSVERDALLQDQHRKREAELIMQVNLLQKSLMNQKEEQKRMAILEQQIQLSAKESENEKLDRQTLQHQLHKVLKELRKARDQITRLESSKQQRESRFSEPSSYNRMDLERLTIQDHMTSPSKVHNILDESVLECPNCGASYPTSQHRELLAHLDYCFT", "length": 435 }, "evidence": [ { "id": "F1SC81", "url": "https://omabrowser.org/oma/group/F1SC81/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q53EZ4-1", "protein_name": "Centrosomal protein of 55 kDa", "gene_name": "CEP55", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSRSTKDLIKSKWGSKPSNSKSETTLEKLKGEIAHLKTSVDEITSGKGKLTDKERHRLLEKIRVLEAEKEKNAYQLTEKDKEIQRLRDQLKARYSTTTLLEQLEETTREGERREQVLKALSEEKDVLKQQLSAATSRIAELESKTNTLRLSQTVAPNCFNSSINNIHEMEIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELEKKTETAAHSLPQQTKKPESEGYLQEEKQKCYNDLLASAKKDLEVERQTITQLSFELSEFRRKYEETQKEVHNLNQLLYSQRRADVQHLEDDRHKTEKIQKLREENDIARGKLEEEKKRSEELLSQVQFLYTSLLKQQEEQTRVALLEQQMQACTLDFENEKLDRQHVQHQLHVILKELRKARNQITQLESLKQLHEFAITEPLVTFQGETENREKVAASPKSPTAALNESLVECPKCNIQYPATEHRDLLVHVEYCSK", "length": 464 }, "evidence": [ { "id": "F1SC81", "url": "https://omabrowser.org/oma/group/F1SC81/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BT07-1", "protein_name": "Centrosomal protein of 55 kDa", "gene_name": "Cep55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSRSPKDLIKSKWGSRPSSSKSDTALEKFKGEIAAFKTSLDEITSGKGKMAEKGRSRLLEKIQVLEAEREKNVYYLLEKDKEIQRLKDHLRSRYSSSSLFEQLEEKTKECEKKQQLLESLSKETDVLKNQLSATTKRLSELESKASTLHLSQSMPANCFNSSMNSIHEKEMQLKDALEKNQQWLVYDQQREAYVKGLLAKIFELEKRTETAAASLTQQMKKIESEGYLQVEKQKYDHLLENAKKDLEVERQAVTQLRLELDEFRRKYEEARKEVEDLNQLLSSQRKADIQHLEEDKQKTERIQKLREESSIFKGKLEEERKRSEELLSQVRILYDSLLKHQEEQARVALLEQQMQACTLDFENEKLDRQNMQHQLYVILKELRKAKSQITQLESLKQLHGFTITEQPFPLQREPESRVKATSPKSPSAALNDSLVECPKCSVQYPATEHRDLLVHVEYCMK", "length": 462 }, "evidence": [ { "id": "F1SC81", "url": "https://omabrowser.org/oma/group/F1SC81/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction", "id": "GO:0051896", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051896", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "cranial skeletal system development", "id": "GO:1904888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904888", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "establishment of protein localization", "id": "GO:0045184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045184", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "mitotic cytokinesis", "id": "GO:0000281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000281", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "midbody abscission", "id": "GO:0061952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061952", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "intercellular bridge", "id": "GO:0045171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045171", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "cleavage furrow", "id": "GO:0032154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032154", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" }, { "name": "Flemming body", "id": "GO:0090543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090543", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SC81", "url": "https://www.uniprot.org/uniprotkb/F1SC81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SC81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC81" }, { "id": "PF12180", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TSG101 and ALIX binding", "eco_id": "ECO_0000259", "start_pos": 173, "end_pos": 204, "start_aa": "Gln", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 434, "end_pos": 436 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SC84-1", "uniprot_ac": "F1SC84", "uniprot_id": "F1SC84_PIG", "mass": { "chemical_mass": 57390.0, "monoisotopic_mass": 57390.0 }, "refseq": {}, "gene_names": [ { "name": "CYP26C1", "type": "recommended", "evidence": [ { "id": "F1SC84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ] } ], "protein_names": [ { "name": "Cytochrome P450 family 26 subfamily C member 1", "type": "synonym", "evidence": [ { "id": "F1SC84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC84/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CYP26C1", "url": "https://www.uniprot.org/uniprotkb/F1SC84", "locus": { "chromosome": "14", "start_pos": 104559978, "end_pos": 104551134, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010474", "url": "https://www.ensembl.org/id/ENSSSCG00000010474" } ] } } ], "crossref": [ { "id": "F1SC84", "url": "https://alphafold.ebi.ac.uk/entry/F1SC84", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010474", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010474", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036396", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036396", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MIIHSTR", "url": "https://omabrowser.org/oma/group/MIIHSTR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SC84", "url": "https://www.orthodb.org/?gene=F1SC84", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24286", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24286", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24286:SF100", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24286:SF100", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00067", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00067", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-211916", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211916", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5365859", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5365859", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "51984", "url": "https://www.rhea-db.org/rhea/51984", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC84-1", "url": "https://www.uniprot.org/uniprotkb/F1SC84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFPWGLSSLSVLGAAGTALLCAGLLLSLAQHLWTLRWTLSRDRSSALPLPKGSMGWPFFGETLHWLVQGSRFHSSRRERYGTVFKTHLLGRPVIRVSGAENVRTILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRQRRKILARVFSRAALERYVPRLQGALRREVRSWCVARGPVAVYEAAKALTFRMAARILLGLRLEEEQCSELARTFERFVENLFSLPLDVPFSGLRKGIRARDQLHRHLEEAIAEKLHEDKAAEPGDALAGIIHSTRELGQELSVQELKESAVELLFAAFFTTASASTSLVLLLLQHPAAIVKIRQELAAQGLGRACGCAPGASGGGAGPRPDCGCEPDLSLAALGRLRYVGCVVKEVLRLLPPVSGGYRTALRTFELDGYQIPKGWNVMYSIRDTHETAAVYRSPPEGFDPERFHTAGEDARGAAGRFHYIPFGGGARSCLGQELAQTVLQLLAVELVRTARWELATPSFPAMQTVPIVHPVDGLRLFFYPLAPSAAQDGRRL", "length": 522, "header": "tr|F1SC84-1|F1SC84_PIG Isoform 1 of Cytochrome P450 family 26 subfamily C member 1 OS=Sus scrofa OX=9823 GN=CYP26C1 PE=3 SV=3 CANONICAL=F1SC84-1" }, "isoforms": [ { "isoform_ac": "F1SC84-1", "url": "https://www.uniprot.org/uniprotkb/F1SC84/entry#F1SC84-1", "sequence": { "sequence": "MFPWGLSSLSVLGAAGTALLCAGLLLSLAQHLWTLRWTLSRDRSSALPLPKGSMGWPFFGETLHWLVQGSRFHSSRRERYGTVFKTHLLGRPVIRVSGAENVRTILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRQRRKILARVFSRAALERYVPRLQGALRREVRSWCVARGPVAVYEAAKALTFRMAARILLGLRLEEEQCSELARTFERFVENLFSLPLDVPFSGLRKGIRARDQLHRHLEEAIAEKLHEDKAAEPGDALAGIIHSTRELGQELSVQELKESAVELLFAAFFTTASASTSLVLLLLQHPAAIVKIRQELAAQGLGRACGCAPGASGGGAGPRPDCGCEPDLSLAALGRLRYVGCVVKEVLRLLPPVSGGYRTALRTFELDGYQIPKGWNVMYSIRDTHETAAVYRSPPEGFDPERFHTAGEDARGAAGRFHYIPFGGGARSCLGQELAQTVLQLLAVELVRTARWELATPSFPAMQTVPIVHPVDGLRLFFYPLAPSAAQDGRRL", "length": 522, "header": "tr|F1SC84-1|F1SC84_PIG Isoform 1 of Cytochrome P450 family 26 subfamily C member 1 OS=Sus scrofa OX=9823 GN=CYP26C1 PE=3 SV=3 CANONICAL=F1SC84-1" }, "locus": { "chromosome": "14", "start_pos": 104558974, "end_pos": 104551333, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011462.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011462.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011163.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011163.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 486, "start_aa": "Thr", "end_pos": 486, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr486", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-211916", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211916", "resource": "Reactome", "description": "Vitamins" }, { "id": "R-SSC-5365859", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5365859", "resource": "Reactome", "description": "RA biosynthesis pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IE06-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "LOC100755258", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLSWGLSCLSMLGAAGTALLCAGVLLGLAQNLWTLRWTLSRDPASTLPLPKGSMGWPFLGETLHWLVQGSRFHSSRRERYGTVFKTHLLGRPVIRVSGAENVRTILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRQRRKVLARVFSRPALERFVPRLQRALRREVRSWCAARGPVAVYGAAKALTFRMAARILLGLQLDETRCTELAQTFEQLVENLFSLPLDVPFSGLRKGIRARDQLYQYLDEAIAQKLHEEQAAEPGDALHLIINSARELGHELSVQELKESAVELLFAAFFTTASASTSLILLLLQHPAAIAKIQQELSAQGLGHACGCAPLATGPRPDCSCEPDLSLAALGRLRYVDCVVKEVLRLLPPVSGGYRTVLRTFELDGYQIPKGWSVMYSIRDTHETAAVYRSPPEGFDPERFGVESEDTRGSCGRFHYIPFGGGARSCLGQKLAQAVLQLLAVELVRTARWELATPAFPVMQTVPILHPVDGLRLFFHPLETLGAGDGLHL", "length": 518 }, "evidence": [ { "id": "F1SC84", "url": "https://omabrowser.org/oma/group/F1SC84/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0Z3H9-1", "protein_name": "Cytochrome P450 family 26 subfamily C member 1", "gene_name": "CYP26C1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPAGLCWPAAAALALLFLALLLALCRHLWALRWSLSRDRASALPLPKGSMGWPFFGETLHWLLQGSRFHSSRRERYGNVFKTHLLGRPVVRVTGAENVRKILLGEHTLVSAQWPQSTQILLGSHTLLGSTGDLHRQRRKILARVFCRAALESYLPRIQKVVSWELRGWCMQPGSIAVYSSAKTLTFRIAAQILLGLRLEEKQFKDLAKTFEQLVENLFSLPLNVPFSGLRKGIKARDMLHEFMERAIQEKLQRAISEEHSDALDFIINSAKEHGKEFTMQELKESAIELIFAAFFTTASASTSLILLLLKHPSAIEKIRQELVSHELYPQHQNCPMAPCPGTGRDSEQQLLTTASDAHEDQLQLPDLTEETELGGGCSPNLPALLEPMHPPSSPQPRGCRCPLDISLEQLSRLRYLDCVVKEVLRVLPPVSGGYRTALQTFELDGYQIPKGWSVMYSIRDTHETAAIYQSPPGGFDPDRFNVTHLEAAGRFHYIPFGGGARSCIGKELAQAILKLLAIELVTTARWELATPTFPAMQTVPIVHPVDGLQLYFHPLWPSHGGEA", "length": 563 }, "evidence": [ { "id": "F1SC84", "url": "https://omabrowser.org/oma/group/F1SC84/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B2RXA7-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "Cyp26c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MISWGLSCLSVLGAAGTTLLCAGLLLGLAQQLWTLRWTLSRDWASTLPLPKGSMGWPFFGETLHWLVQGSRFHSSRRERYGTVFKTHLLGRPVIRVSGAENVRTILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRQRRKVLARVFSRSSLEQFVPRLQGALRREVRSWCAAQRPVAVYQAAKALTFRMAARILLGLQLDEARCTELAHTFEQLVENLFSLPLDVPFSGLRKGIRARDQLYEHLDEAVAEKLQEKQTAEPGDALLLIINSARELGHEPSVQELKELAVELLFAAFFTTASASTSLILLLLQHPAAITKIQQELSAQGLGRACTCTPRASGSPPDCGCEPDLSLAMLGRLRYVDCVVKEVLRLLPPVSGGYRTALRTFELDGYQIPKGWSVMYSIRDTHETAAVYRSPPEGFDPERFGVESGDARGSGGRFHYIPFGGGARSCLGQELAQAVLQLLAVELVRTARWELATPAFPVMQTVPIVHPVDGLLLFFHPLPTSGAGDGLPF", "length": 518 }, "evidence": [ { "id": "F1SC84", "url": "https://omabrowser.org/oma/group/F1SC84/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4AAL3-1", "protein_name": "Cytochrome P450, family 26, subfamily C, polypeptide 1", "gene_name": "Cyp26c1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSWGLSCLSMLGAAGTALLCAGLLLGLAQQLWTLRWTLSRDWASTLPLPKGSMGWPFFGETLHWLVQGSRFHSSRRERYGTVFKTHLLGRPVIRVSGAENVRTILLGEHRLVRSQWPQSAHILLGSHTLLGAVGERHRQRRKVLARVFSRPALEQFVPRLQEALRREVRSWCAAQRPVAVYQAAKALTFRMAARILLGLQLDEARCTELAQTFERLVENLFSLPLDVPFSGLRKGIRARDQLYQHLDEVIAEKLREELTAEPGDALHLIINSARELGRELSVQELKELAVELLFAAFFTTASASTSLILLLLQHPAAIAKIQQELSAQGLGSPCSCAPRASGSRPDCSCEPDLSLAVLGRLRYVDCVVKEVLRLLPPVSGGYRTALRTFELDGYQIPKGWSVMYSIRDTHETAAVYRSPPEGFDPERFGVESEDARGSGGRFHYIPFGGGARSCLGQELAQAVLQLLAVELVRTARWELATPAFPVMQTVPIVHPVDGLLLLFHPLPTLGAGDGSPF", "length": 518 }, "evidence": [ { "id": "F1SC84", "url": "https://omabrowser.org/oma/group/F1SC84/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BDT5-1", "protein_name": "Cytochrome P450 family 26 subfamily C member 1", "gene_name": "CYP26C1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLPWGLSCLSALGAVGTALLGAGLLLSLAQHLWTLRWTLSRDRASALPLPKGSMGWPFFGETLHWLVQGSRFHSSRRERYGTVFKTHLLGRPVIRVSGAENVRTVLLGEHRLVRSQWPQSAHILLGSHTLLGAVGESHRQRRKILARAFSRAALECYVPRLQRALRREVRSWCAARGPVAVYEAAKALTFRMAARILLGLRLDEAQCSELARTFEQFVENLFSLPLDVPFSGLRKGIRARDQLHRHLEEAIAQKLLEDKTAVEPGDALDGIIHSTRELGHELSVQELKESAVELLFAAFSTTASASTSLVLLLLQHPAAIAKIQQELAAQGLGRACGCAPAASGGGAGPPPDCGCEPDLSLATLGHLRYVGCVVKEVLRLLPPVSGGYRTALRTFELDGYQIPKGWNVMYSIRDTHETAAVYRSPPEGFDPERFGTAGDDALGAAGRFHYIPFGGGARSCLGQELAQTVLQLLAVELVRTARWELATPAFPAMQTVPIVHPVDGLRLFFHPLASPAAQDGQRL", "length": 523 }, "evidence": [ { "id": "F1SC84", "url": "https://omabrowser.org/oma/group/F1SC84/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q42569-1", "protein_name": "3beta,22alpha-dihydroxysteroid 3-dehydrogenase", "gene_name": "CYP90A1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAFTAFLLLLSSIAAGFLLLLRRTRYRRMGLPPGSLGLPLIGETFQLIGAYKTENPEPFIDERVARYGSVFMTHLFGEPTIFSADPETNRFVLQNEGKLFECSYPASICNLLGKHSLLLMKGSLHKRMHSLTMSFANSSIIKDHLMLDIDRLVRFNLDSWSSRVLLMEEAKKITFELTVKQLMSFDPGEWSESLRKEYLLVIEGFFSLPLPLFSTTYRKAIQARRKVAEALTVVVMKRREEEEEGAERKKDMLAALLAADDGFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGVFRRAMTDVEIKGYKIPKGWKVFSSFRAVHLDPNHFKDARTFNPWRWQSNSVTTGPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTGFSWVPAEQDKLVFFPTTRTQKRYPIFVKRRDFAT", "length": 472 }, "evidence": [ { "id": "F1SC84", "url": "https://omabrowser.org/oma/group/F1SC84/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6V0L0-1", "protein_name": "Cytochrome P450 26C1", "gene_name": "CYP26C1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFPWGLSCLSVLGAAGTALLCAGLLLSLAQHLWTLRWMLSRDRASTLPLPKGSMGWPFFGETLHWLVQGSRFHSSRRERYGTVFKTHLLGRPVIRVSGAENVRTILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRRRRKVLARVFSRAALERYVPRLQGALRHEVRSWCAAGGPVSVYDASKALTFRMAARILLGLRLDEAQCATLARTFEQLVENLFSLPLDVPFSGLRKGIRARDQLHRHLEGAISEKLHEDKAAEPGDALDLIIHSARELGHEPSMQELKESAVELLFAAFFTTASASTSLVLLLLQHPAAIAKIREELVAQGLGRACGCAPGAAGGSEGPPPDCGCEPDLSLAALGRLRYVDCVVKEVLRLLPPVSGGYRTALRTFELDGYQIPKGWSVMYSIRDTHETAAVYRSPPEGFDPERFGAAREDSRGASSRFHYIPFGGGARSCLGQELAQAVLQLLAVELVRTARWELATPAFPAMQTVPIVHPVDGLRLFFHPLTPSVAGNGLCL", "length": 522 }, "evidence": [ { "id": "F1SC84", "url": "https://omabrowser.org/oma/group/F1SC84/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "retinoic acid 4-hydroxylase activity", "id": "GO:0008401", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008401", "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "pmid": "" }, { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "pmid": "" }, { "name": "retinoic acid binding", "id": "GO:0001972", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001972", "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "pmid": "" }, { "name": "monooxygenase activity", "id": "GO:0004497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004497", "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "central nervous system development", "id": "GO:0007417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007417", "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "pmid": "" }, { "name": "retinoic acid catabolic process", "id": "GO:0034653", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034653", "evidence": [ { "database": "UniProtKB", "id": "F1SC84", "url": "https://www.uniprot.org/uniprotkb/F1SC84" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "51984", "name": "", "equation": "all-trans-retinoate + reduced [NADPH--hemoprotein reductase] + O2 = all-trans-4-hydroxyretinoate + oxidized [NADPH--hemoprotein reductase] + H2O + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "51984", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/51984" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SC84-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 522, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SC84-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SC84" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 486 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SC86-1", "uniprot_ac": "F1SC86", "uniprot_id": "F1SC86_PIG", "mass": { "chemical_mass": 36976.0, "monoisotopic_mass": 36976.0 }, "refseq": { "ac": "XP_001928848", "name": "deoxynucleotidyltransferase terminal-interacting protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928848" }, "gene_names": [ { "name": "DNTTIP1", "type": "recommended", "evidence": [ { "id": "F1SC86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ] }, { "name": "DNTTIP1", "type": "synonym", "evidence": [ { "id": "XP_001928848", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928848" } ] } ], "protein_names": [ { "name": "Deoxynucleotidyltransferase terminal-interacting protein 1", "type": "recommended", "evidence": [ { "id": "F1SC86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC86/entry#names_and_taxonomy" } ] }, { "name": "Terminal deoxynucleotidyltransferase-interacting factor 1", "type": "synonym", "evidence": [ { "id": "F1SC86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC86/entry#names_and_taxonomy" } ] }, { "name": "deoxynucleotidyltransferase terminal-interacting protein 1", "type": "synonym", "evidence": [ { "id": "XP_001928848", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928848" } ] } ], "function": [ { "annotation": "Increases DNTT terminal deoxynucleotidyltransferase activity (in vitro). Also acts as a transcriptional regulator, binding to the consensus sequence 5'-GNTGCATG-3' following an AT-tract. Associates with RAB20 promoter and positively regulates its transcription. Binds DNA and nucleosomes; may recruit HDAC1 complexes to nucleosomes or naked DNA.", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86#function" }, { "database": "UniProtKB", "id": "ARBA00045675", "url": "https://www.uniprot.org/uniprotkb/ARBA00045675#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNTTIP1", "url": "https://www.uniprot.org/uniprotkb/F1SC86", "locus": { "chromosome": "17", "start_pos": 48017560, "end_pos": 47994656, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007422", "url": "https://www.ensembl.org/id/ENSSSCG00000007422" } ] } } ], "crossref": [ { "id": "F1SC86", "url": "https://alphafold.ebi.ac.uk/entry/F1SC86", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007422", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007422", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154389", "url": "https://www.ncbi.nlm.nih.gov/gene/100154389", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154389", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154389", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LAENHHM", "url": "https://omabrowser.org/oma/group/LAENHHM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SC86", "url": "https://www.orthodb.org/?gene=F1SC86", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23399:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23399:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18192", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18192", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9764725", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928848", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928848", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SC86-1", "url": "https://www.uniprot.org/uniprotkb/F1SC86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGATGDAEQPRGPGGAERGGPELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSFTDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNIGEEVDAEQLIQEACRSCLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEEGAHRGSPIPKKRKGRPPGHILSNDRAAAGMVWKPKSCEPIRREGPKWDPARLNETTTFVLGSRANKALGMGGTRGRIYIKHPHLFKYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLPSWMVEKMRKYMETLRTENEHRAVEAPPQT", "length": 329, "header": "tr|F1SC86-1|F1SC86_PIG Isoform 1 of Deoxynucleotidyltransferase terminal-interacting protein 1 OS=Sus scrofa OX=9823 GN=DNTTIP1 PE=4 SV=1 CANONICAL=F1SC86-1" }, "isoforms": [ { "isoform_ac": "F1SC86-1", "url": "https://www.uniprot.org/uniprotkb/F1SC86/entry#F1SC86-1", "sequence": { "sequence": "MGATGDAEQPRGPGGAERGGPELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSFTDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNIGEEVDAEQLIQEACRSCLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEEGAHRGSPIPKKRKGRPPGHILSNDRAAAGMVWKPKSCEPIRREGPKWDPARLNETTTFVLGSRANKALGMGGTRGRIYIKHPHLFKYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLPSWMVEKMRKYMETLRTENEHRAVEAPPQT", "length": 329, "header": "tr|F1SC86-1|F1SC86_PIG Isoform 1 of Deoxynucleotidyltransferase terminal-interacting protein 1 OS=Sus scrofa OX=9823 GN=DNTTIP1 PE=4 SV=1 CANONICAL=F1SC86-1" }, "locus": { "chromosome": "17", "start_pos": 48017330, "end_pos": 47994721, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008125.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008125.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007909.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007909.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154389", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154389", "resource": "KEGG Pathway" }, { "id": "R-SSC-9764725", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "resource": "Reactome", "description": "Negative Regulation of CDH1 Gene Transcription" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YU04-1", "protein_name": "Deoxynucleotidyltransferase terminal-interacting protein 1", "gene_name": "DNTTIP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGAARDAEQQSGPPGEEGPGGGEEQPSGTSPWNIMIKHRQVQRRGRRSQMTTSFTDPVVSMDLLRAVLQPSINEEIRGVFNKYMKFFQKAALNVRDNVGEEVDPEQLIQETCRSCLEQAKLLFSDGKKVVSRLPHEQMGPKRARQMDEELNRRGSPLPKKRKGRPPGQSLSNDRGVSGMSAWKLKVSEPVRRDGPKWDPSRLTETTTFVLGSRANKALGMGGTRGRLYIKHPHLFKYAADPQDKQWLAEQQHMRATGGKMAYLLLEEDIRDLAATDDYRDSVDLRLEELKPFVPPAWMTEKMQKYMETLRNGGDPPPPPEIPPEALPEGPPEGHSEPSDAPPAPQ", "length": 345 }, "evidence": [ { "id": "F1SC86", "url": "https://omabrowser.org/oma/group/F1SC86/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6H7A8-1", "protein_name": "Deoxynucleotidyltransferase terminal-interacting protein 1", "gene_name": "DNTTIP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGATGDVEQPRGPGGAERGGPELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSFTDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRSCLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECALRGSPIPKKRKGRPPGHILANDRAATGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLFKYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLPSWMVEKMRKYMETLRTENEHRAVEAPPQT", "length": 329 }, "evidence": [ { "id": "F1SC86", "url": "https://omabrowser.org/oma/group/F1SC86/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q91Y53-1", "protein_name": "Deoxynucleotidyltransferase terminal-interacting protein 1", "gene_name": "Dnttip1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATGDTGGPRPGTESRRPGNVGNAGAAGQPVLTNPWNIMIKPRQVQRRGRRSQMTTSFTDPAISMDLLRAVLQPSINEEIQSVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRSCVEQAKLLFSDGEKVIPRLAHELPGIKRGRQAEEESHREAPFPKRGKVGLPGHVLSNDRAAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLFKYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLPSWMVEKMRKYMETLRTENEHRAAEATPQT", "length": 327 }, "evidence": [ { "id": "F1SC86", "url": "https://omabrowser.org/oma/group/F1SC86/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99LB0-1", "protein_name": "Deoxynucleotidyltransferase terminal-interacting protein 1", "gene_name": "Dnttip1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGATGDTEQPRGPGGAERGGLELGDAGAAGQPVLTNPWNIMIKHRQVQRRGRRSQMTTSFTDPAISMDLLRAVLQPSINEEIQGVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRSCLEQAKLLFSDGEKVIPRLAHELPGIKRGRQAEEESHRGSPIPKKRKGRPPGHVLSNDRAAAGMVWKQKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLFKYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLPSWMVEKMRKYMETLRTENEHRAAEAPPQT", "length": 328 }, "evidence": [ { "id": "F1SC86", "url": "https://omabrowser.org/oma/group/F1SC86/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H147-1", "protein_name": "Deoxynucleotidyltransferase terminal-interacting protein 1", "gene_name": "DNTTIP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGATGDAEQPRGPSGAERGGLELGDAGAAGQLVLTNPWNIMIKHRQVQRRGRRSQMTTSFTDPAISMDLLRAVLQPSINEEIQTVFNKYMKFFQKAALNVRDNVGEEVDAEQLIQEACRSCLEQAKLLFSDGEKVIPRLTHELPGIKRGRQAEEECAHRGSPLPKKRKGRPPGHILSSDRAAAGMVWKPKSCEPIRREGPKWDPARLNESTTFVLGSRANKALGMGGTRGRIYIKHPHLFKYAADPQDKHWLAEQHHMRATGGKMAYLLIEEDIRDLAASDDYRGCLDLKLEELKSFVLPSWMVEKMRKYMETLRTENEHRAVEAPPQT", "length": 329 }, "evidence": [ { "id": "F1SC86", "url": "https://omabrowser.org/oma/group/F1SC86/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "pmid": "" }, { "name": "nucleosome binding", "id": "GO:0031491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031491", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "pmid": "" }, { "name": "histone deacetylase complex", "id": "GO:0000118", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000118", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "F1SC86", "url": "https://www.uniprot.org/uniprotkb/F1SC86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SC86-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 329, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SC86-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SC86" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SC86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC86" }, { "id": "PF18192", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNTTIP1 dimerisation", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 131, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SC86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SC86" }, { "id": "PF21229", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21229" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TdIF1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 211, "end_pos": 307, "start_aa": "Thr", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 208, "end_pos": 210 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCA9-1", "uniprot_ac": "F1SCA9", "uniprot_id": "F1SCA9_PIG", "mass": { "chemical_mass": 29637.0, "monoisotopic_mass": 29637.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100520481", "type": "recommended", "evidence": [ { "id": "F1SCA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCA9" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SCA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCA9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SCA9", "url": "https://www.uniprot.org/uniprotkb/F1SCA9#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCA9", "url": "https://www.uniprot.org/uniprotkb/F1SCA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100520481", "url": "https://www.uniprot.org/uniprotkb/F1SCA9", "locus": {} } ], "crossref": [ { "id": "F1SCA9", "url": "https://alphafold.ebi.ac.uk/entry/F1SCA9", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VITYANC", "url": "https://omabrowser.org/oma/group/VITYANC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SCA9", "url": "https://www.uniprot.org/uniprotkb/F1SCA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCA9-1", "url": "https://www.uniprot.org/uniprotkb/F1SCA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPRNQTGISEILLISDSHLHSPMYFFLSNLSFVDICFTSTTIPKMLWNIQTQSKVIPFEGCIIQMYFFILFAGLDSLILTVMAYDRFVAICHPLHYTVIMNLWFCLLLVLVSWIISALHSLLESLMVLRLSFCPVLEISHFFCELNQMIQLASSDTFLNNLVMYFGSVLLAGTSLTGILYSYSKIVSSIHAISCSQGKYKAFSTCASHLSVVSLFYCTSLGVYLSSAATHSSHSSVTTSVMYTVVTPMLNPFIYSLRNKDLRL", "length": 264, "header": "tr|F1SCA9-1|F1SCA9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100520481 PE=3 SV=4 CANONICAL=F1SCA9-1" }, "isoforms": [ { "isoform_ac": "F1SCA9-1", "url": "https://www.uniprot.org/uniprotkb/F1SCA9/entry#F1SCA9-1", "sequence": { "sequence": "MAPRNQTGISEILLISDSHLHSPMYFFLSNLSFVDICFTSTTIPKMLWNIQTQSKVIPFEGCIIQMYFFILFAGLDSLILTVMAYDRFVAICHPLHYTVIMNLWFCLLLVLVSWIISALHSLLESLMVLRLSFCPVLEISHFFCELNQMIQLASSDTFLNNLVMYFGSVLLAGTSLTGILYSYSKIVSSIHAISCSQGKYKAFSTCASHLSVVSLFYCTSLGVYLSSAATHSSHSSVTTSVMYTVVTPMLNPFIYSLRNKDLRL", "length": 264, "header": "tr|F1SCA9-1|F1SCA9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100520481 PE=3 SV=4 CANONICAL=F1SCA9-1" }, "locus": { "chromosome": "2", "start_pos": 62757919, "end_pos": 62757023, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015089.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015089.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014684.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014684.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCA9", "url": "https://www.uniprot.org/uniprotkb/F1SCA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SCA9", "url": "https://www.uniprot.org/uniprotkb/F1SCA9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SCA9", "url": "https://www.uniprot.org/uniprotkb/F1SCA9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCA9", "url": "https://www.uniprot.org/uniprotkb/F1SCA9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SCA9", "url": "https://www.uniprot.org/uniprotkb/F1SCA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCA9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 264, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCA9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCA9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCA9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 255, "start_aa": "Gln", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 30, "end_pos": 32 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCD0-1", "uniprot_ac": "F1SCD0", "uniprot_id": "F1SCD0_PIG", "mass": { "chemical_mass": 46641.0, "monoisotopic_mass": 46641.0 }, "refseq": { "ac": "XP_013833854", "name": "serpin A3-8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833854" }, "gene_names": [ { "name": "LOC396685", "type": "synonym", "evidence": [ { "id": "XP_013833854", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833854" } ] } ], "protein_names": [ { "name": "Serpin domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SCD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCD0/entry#names_and_taxonomy" } ] }, { "name": "serpin A3-8", "type": "synonym", "evidence": [ { "id": "XP_013833854", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833854" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCD0", "url": "https://www.uniprot.org/uniprotkb/F1SCD0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SCD0", "locus": {} } ], "crossref": [ { "id": "F1SCD0", "url": "https://alphafold.ebi.ac.uk/entry/F1SCD0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030371", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030371", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19551", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19551", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "396685", "url": "https://www.ncbi.nlm.nih.gov/gene/396685", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:396685", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396685", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SLQPRHI", "url": "https://omabrowser.org/oma/group/SLQPRHI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCD0", "url": "https://www.orthodb.org/?gene=F1SCD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF145", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF145", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013833854", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833854", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SCD0", "url": "https://www.uniprot.org/uniprotkb/F1SCD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SCD0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKAEGMSPFLALGLLVAGLCSRVHCVPEGKPDPENGTPNDQHSRTPVDPHAIVPSNTDFAFSLYKQLVSLDPSKNVIFSPLSVSIALAFLSLGARGPTLTELLEGLKFNLTKTPEAEIHQGFQHLLQALSQPSNLLQLNVGNAMFVDEHLKLLDEFRQDAQAKFASDVFSTNFKDPGAAVVFINDYVKNKTKGKIPKLFDEHATFSVMVLVNYIYFNAKWKTPFDPEHTIESTFHVSKNRTVKVPMMSLRGLETPYFRDEELACTVVELPYTSNDSALFILPDDGRMAAVEAKLLPETLRRWRDSLQPRRIDALYLPRFSVSGDYQLKDTLKQLGIQKVFTHEADLSGVTGDNKLGVSKVIHKAVLDVGEEGTEAAAATGIEMMTSTLQSLTVIFSRPFLFAVIDKDTGTVLFLGKVADPSPA", "length": 423, "header": "tr|F1SCD0-1|F1SCD0_PIG Isoform 1 of Serpin domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=F1SCD0-1" }, "isoforms": [ { "isoform_ac": "F1SCD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SCD0/entry#F1SCD0-1", "sequence": { "sequence": "MKAEGMSPFLALGLLVAGLCSRVHCVPEGKPDPENGTPNDQHSRTPVDPHAIVPSNTDFAFSLYKQLVSLDPSKNVIFSPLSVSIALAFLSLGARGPTLTELLEGLKFNLTKTPEAEIHQGFQHLLQALSQPSNLLQLNVGNAMFVDEHLKLLDEFRQDAQAKFASDVFSTNFKDPGAAVVFINDYVKNKTKGKIPKLFDEHATFSVMVLVNYIYFNAKWKTPFDPEHTIESTFHVSKNRTVKVPMMSLRGLETPYFRDEELACTVVELPYTSNDSALFILPDDGRMAAVEAKLLPETLRRWRDSLQPRRIDALYLPRFSVSGDYQLKDTLKQLGIQKVFTHEADLSGVTGDNKLGVSKVIHKAVLDVGEEGTEAAAATGIEMMTSTLQSLTVIFSRPFLFAVIDKDTGTVLFLGKVADPSPA", "length": 423, "header": "tr|F1SCD0-1|F1SCD0_PIG Isoform 1 of Serpin domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=F1SCD0-1" }, "locus": { "chromosome": "7", "start_pos": 115948454, "end_pos": 115941853, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002760.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002760.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002691.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002691.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCD0", "url": "https://www.uniprot.org/uniprotkb/F1SCD0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:396685", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396685", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P05544-1", "protein_name": "Serine protease inhibitor A3L", "gene_name": "Serpina3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFIAALGLLMAGICPAVLCDGTLGRDTLSHEDHGKGRQLHSLTLASSNTDFALSLYKKLALRNPDKNVVFSPLSISAALTILSLGAKDSTMEEILEGLKFNLTEITEEEIHQGFGHLLQRLSQPEDQVEINTGSALFIDKEQPILSEFQEKTRALYQAEAFIADFKQPNEAKKLINDYVSNQTQGKIAELFSDLEERTSMVLVNYLLFKGKWKVPFNPNDTFESEFYLDEKRSVKVPMMKIKEVTTPYVRDEELSCSVLELKYTGNASALFILPDQGKMQQVESSLQPETLKKWKDSLIPRIINDLRMPKFSISTDYSLKEVLPELGIKKVFSQQADLSRITGTKDLYVSQVVHKAVLDVDETGTEATAATGVATVIRRQPRTLNFNRPFMVVITDMDSQSILFVAKITNPK", "length": 413 }, "evidence": [ { "id": "F1SCD0", "url": "https://omabrowser.org/oma/group/F1SCD0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P29621-1", "protein_name": "Serine protease inhibitor A3C", "gene_name": "Serpina3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFIVALGLVITGICPGVLCFPDGTLERDTLFHKDKENGTQLDSLTLASINTDFAFSLYKKLALKNPDTNIVFSPLSISAALAIVSLGAKGNTLEEILEGLNFNLTETPEADIHQGFGHLLQRLSHPGEQVQISTGSALFVEKHLQILAEFQEKARALYQAEAFTADFQQPLEATKLINDYVSNQTQRKIKGLISDLDTDTLMVLVNYIYFKGKWKMPFNPRDTFESEFYLDVKRSVKVPMMKIKTLTTPYFRDEELSCTVVELKYKGNASALFILPDQGRMQQVEASLQPETLRKWKNSLRPRKMGELYLPKFSISTDYSLKNILPELGIKEIFSKQADLSGITGTKDLIVSQMVHKAVLDVAETGTEGVAATGVNFRILSRRTSLWFNRTFLMVISHTDVQTTLFIAKITHPKRA", "length": 417 }, "evidence": [ { "id": "F1SCD0", "url": "https://omabrowser.org/oma/group/F1SCD0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1SCD0", "url": "https://www.uniprot.org/uniprotkb/F1SCD0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SCD0", "url": "https://www.uniprot.org/uniprotkb/F1SCD0" } ], "pmid": "" }, { "name": "chromaffin granule", "id": "GO:0042583", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042583", "evidence": [ { "database": "UniProtKB", "id": "F1SCD0", "url": "https://www.uniprot.org/uniprotkb/F1SCD0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCD0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 423, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCD0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCD0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCD0" }, { "id": "SM00093", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serpin", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 420, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 189, "end_pos": 191 }, { "start_pos": 239, "end_pos": 241 }, { "start_pos": 274, "end_pos": 276 }, { "start_pos": 35, "end_pos": 37 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCE7-1", "uniprot_ac": "F1SCE7", "uniprot_id": "F1SCE7_PIG", "mass": { "chemical_mass": 46676.0, "monoisotopic_mass": 46676.0 }, "refseq": {}, "gene_names": [ { "name": "SERPINA12", "type": "recommended", "evidence": [ { "id": "F1SCE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCE7" } ] } ], "protein_names": [ { "name": "Serpin family A member 12", "type": "synonym", "evidence": [ { "id": "F1SCE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCE7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCE7", "url": "https://www.uniprot.org/uniprotkb/F1SCE7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SERPINA12", "url": "https://www.uniprot.org/uniprotkb/F1SCE7", "locus": { "chromosome": "7", "start_pos": 115721098, "end_pos": 115734978, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002478", "url": "https://www.ensembl.org/id/ENSSSCG00000002478" } ] } } ], "crossref": [ { "id": "F1SCE7", "url": "https://alphafold.ebi.ac.uk/entry/F1SCE7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002478", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002478", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MFRGGMY", "url": "https://omabrowser.org/oma/group/MFRGGMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCE7", "url": "https://www.orthodb.org/?gene=F1SCE7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SCE7", "url": "https://www.uniprot.org/uniprotkb/F1SCE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCE7-1", "url": "https://www.uniprot.org/uniprotkb/F1SCE7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPTLGLGLLLAGLLTVEGILKSNFSPKNHEAVSRDQVGKGRRAAQELAKRNTDFGFRLYKKLSCNNSNKNIFFSPWSISVAFSMLTLGAQDSTLAEIKQGFNFRNMPEKDLHEGFHYLINRLNQRNHGHDLGLGNALFIDKKLKPQKKFLTDVKNLYKADTIPINFRNLENAQRQINDYVNQKTQGKISNLVKKIDPSTLILLINYVFFQARWKHEFDPQATKEEDFILEGNRTVKVPMMIHSSVYAVGHDEQLSCTVLEMPFKGNLSALFILPDEGEMKNVEEALGMNTFAKWKKLLNRSVTEVSVPRLSISSQYDLKKTLSSLNVTKIFEDHGDLTRISPHEGLKVGKVIHKAALKMDEQGAEGAAGSGMEVLPMQTRLKIKINRPFLLTIFDNSMNNILFIGRISNPSGN", "length": 414, "header": "tr|F1SCE7-1|F1SCE7_PIG Isoform 1 of Serpin family A member 12 OS=Sus scrofa OX=9823 GN=SERPINA12 PE=3 SV=3 CANONICAL=F1SCE7-1" }, "isoforms": [ { "isoform_ac": "F1SCE7-1", "url": "https://www.uniprot.org/uniprotkb/F1SCE7/entry#F1SCE7-1", "sequence": { "sequence": "MNPTLGLGLLLAGLLTVEGILKSNFSPKNHEAVSRDQVGKGRRAAQELAKRNTDFGFRLYKKLSCNNSNKNIFFSPWSISVAFSMLTLGAQDSTLAEIKQGFNFRNMPEKDLHEGFHYLINRLNQRNHGHDLGLGNALFIDKKLKPQKKFLTDVKNLYKADTIPINFRNLENAQRQINDYVNQKTQGKISNLVKKIDPSTLILLINYVFFQARWKHEFDPQATKEEDFILEGNRTVKVPMMIHSSVYAVGHDEQLSCTVLEMPFKGNLSALFILPDEGEMKNVEEALGMNTFAKWKKLLNRSVTEVSVPRLSISSQYDLKKTLSSLNVTKIFEDHGDLTRISPHEGLKVGKVIHKAALKMDEQGAEGAAGSGMEVLPMQTRLKIKINRPFLLTIFDNSMNNILFIGRISNPSGN", "length": 414, "header": "tr|F1SCE7-1|F1SCE7_PIG Isoform 1 of Serpin family A member 12 OS=Sus scrofa OX=9823 GN=SERPINA12 PE=3 SV=3 CANONICAL=F1SCE7-1" }, "locus": { "chromosome": "7", "start_pos": 115729385, "end_pos": 115721101, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002753.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002753.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002684.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002684.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCE7", "url": "https://www.uniprot.org/uniprotkb/F1SCE7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3I299-1", "protein_name": "Serpin A12", "gene_name": "Serpina12", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNLVLGLGLFLAGLLAVKGLLQARDFLETYGAPLKVQEWKGKKDARTLARRNMEFGFNLLQKLAANSPQQNIFFSPLSMSTAFSMLSLGAQNSTLREIKEGFNFKEMPERDMHLGFYYLLHKLNQETQDIKMNLGNALFMDQKLRPQKRFLKLAKTVYDADMVLTNFQDLEGAQREINKYVSQKTHNIINNLVRSIDPGTVMLLANYIYFRARWQYEFDPKQTKEEEFFLDKGKTVKVPMMFRGGMYDMAYDSQLSCTILEMPYRGNITATFVLPDKGKMKQVEQGLQVDIFAKWKSLLSKRVVDVWVPRLHISSTYNMKKLLSRLGISKIFEENGDLTRISSHRSLKVGEAVHKAELKMDEKGMEGAAGSGAQTLPMETPQRLKLNSPFLMMLYENSLPSMIFLARIYDPSGK", "length": 414 }, "evidence": [ { "id": "F1SCE7", "url": "https://omabrowser.org/oma/group/F1SCE7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7TMF5-1", "protein_name": "Serpin A12", "gene_name": "Serpina12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTRMLDLGLFLAGLLTVKGLLQDRDAPDMYDSPVRVQEWRGKKDARQLARHNMEFGFKLLQRLASNSPQGNIFLSPLSISTAFSMLSLGAQNSTLEEIREGFNFKEMSNWDVHAAFHYLLHKLNQETEDTKMNLGNALFMDQKLRPQQRFLNLAKNVYDADMVLTNFQDLENTQKDINRYISQKTHSRIKNMVKSIDPGTVMILTNYIYFRGRWQYEFDPKQTKEEEFFIEKGKTVKVPMMFQRGLYDMAYDSQLSCTILEIPYRGNITATFVLPDNGKLKLLEQGLQADIFAKWKSLLSKRVVDVWVPKLRISSTYNMKKVLSRLGISKIFEENGDLTRISSHRSLKVGEAVHKAELKMDEKGMEGAAGSGAQTLPMETPRHMKLDRPFLMMIYENFMPSMVFLARIYDPSG", "length": 413 }, "evidence": [ { "id": "F1SCE7", "url": "https://omabrowser.org/oma/group/F1SCE7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IW75-1", "protein_name": "Serpin A12", "gene_name": "SERPINA12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPTLGLAIFLAVLLTVKGLLKPSFSPRNYKALSEVQGWKQRMAAKELARQNMDLGFKLLKKLAFYNPGRNIFLSPLSISTAFSMLCLGAQDSTLDEIKQGFNFRKMPEKDLHEGFHYIIHELTQKTQDLKLSIGNTLFIDQRLQPQRKFLEDAKNFYSAETILTNFQNLEMAQKQINDFISQKTHGKINNLIENIDPGTVMLLANYIFFRARWKHEFDPNVTKEEDFFLEKNSSVKVPMMFRSGIYQVGYDDKLSCTILEIPYQKNITAIFILPDEGKLKHLEKGLQVDTFSRWKTLLSRRVVDVSVPRLHMTGTFDLKKTLSYIGVSKIFEEHGDLTKIAPHRSLKVGEAVHKAELKMDERGTEGAAGTGAQTLPMETPLVVKIDKPYLLLIYSEKIPSVLFLGKIVNPIGK", "length": 414 }, "evidence": [ { "id": "F1SCE7", "url": "https://omabrowser.org/oma/group/F1SCE7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R4Z1-1", "protein_name": "Serpin A12", "gene_name": "Serpina12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNLVLGLGLFLAGLLTVKGLLQDRDAPDTYESPVRVQEWRGKKDARELTRHNMEFGFKLLQRLASNSRQGNIFLSPLSISTAFSMLSLGAQNSTLEEIREGFNFKEMSDRDMHMGFHYLLQKLNRETQDVKMSIGNALFMDQRLRPQQRFLKLAKNLYDADMILTNFQDLENTQKNINKYISRKTHNRIENMVKNIDPGTVMLLTNYIYFQGRWQYEFDPKQTKEEDFFIEEGKTVKVPMMFQRGMYDMAYDSQLSCTILEMPYRGNITATFVLPDSGKLRLLEQGLQADIFAKWKSLLSKRVVDVWVPRLHISATYNMKKVLSRLGISKIFEEHGDLTRISSHRSLKVGEAVHKAELRMNEKGTEGAAGSGAQTLPMETPRRMKLNAPFLMMIYENLMPSMIFLARIYNP", "length": 411 }, "evidence": [ { "id": "F1SCE7", "url": "https://omabrowser.org/oma/group/F1SCE7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1SCE7", "url": "https://www.uniprot.org/uniprotkb/F1SCE7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SCE7", "url": "https://www.uniprot.org/uniprotkb/F1SCE7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCE7", "url": "https://www.uniprot.org/uniprotkb/F1SCE7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCE7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 414, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCE7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCE7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCE7" }, { "id": "SM00093", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serpin", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 411, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 233, "end_pos": 235 }, { "start_pos": 24, "end_pos": 26 }, { "start_pos": 267, "end_pos": 269 }, { "start_pos": 300, "end_pos": 302 }, { "start_pos": 327, "end_pos": 329 }, { "start_pos": 66, "end_pos": 68 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCG7-1", "uniprot_ac": "F1SCG7", "uniprot_id": "F1SCG7_PIG", "mass": { "chemical_mass": 91370.0, "monoisotopic_mass": 91370.0 }, "refseq": {}, "gene_names": [ { "name": "DDX24", "type": "recommended", "evidence": [ { "id": "F1SCG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" } ] } ], "protein_names": [ { "name": "ATP-dependent RNA helicase", "type": "recommended", "evidence": [ { "id": "F1SCG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG7/entry#names_and_taxonomy" } ] }, { "name": "3.6.4.13", "type": "synonym", "evidence": [ { "id": "F1SCG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "ATP-dependent RNA helicase that plays a role in various aspects of RNA metabolism including pre-mRNA splicing and is thereby involved in different biological processes such as cell cycle regulation or innate immunity. Plays an inhibitory role in TP53 transcriptional activity and subsequently in TP53 controlled cell growth arrest and senescence by inhibiting its EP300 mediated acetylation. Negatively regulates cytosolic RNA-mediated innate immune signaling at least in part by affecting RIPK1/IRF7 interactions. Alternatively, possesses antiviral activity by recognizing gammaherpesvirus transcripts in the context of lytic reactivation. Plays an essential role in cell cycle regulation in vascular smooth muscle cells by interacting with and regulating FANCA (Fanconi anemia complementation group A) mRNA.", "evidence": [ { "database": "UniProtKB", "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7#function" }, { "database": "UniProtKB", "id": "ARBA00054398", "url": "https://www.uniprot.org/uniprotkb/ARBA00054398#function" } ] }, { "annotation": "RNA helicase.", "evidence": [ { "database": "UniProtKB", "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7#function" }, { "database": "UniProtKB", "id": "RU365068", "url": "https://www.uniprot.org/uniprotkb/RU365068#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DDX24", "url": "https://www.uniprot.org/uniprotkb/F1SCG7", "locus": { "chromosome": "7", "start_pos": 115328121, "end_pos": 115352929, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002470", "url": "https://www.ensembl.org/id/ENSSSCG00000002470" } ] } } ], "crossref": [ { "id": "F1SCG7", "url": "https://alphafold.ebi.ac.uk/entry/F1SCG7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002470", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002470", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17946", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17946", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18787", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18787", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24031", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24031", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCG7-1", "url": "https://www.uniprot.org/uniprotkb/F1SCG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFADGQMDDLVCFEELTDYRLVSPAKNSSSLFLKEESKKRKAQAVAEGEEEGESSSSKKKMKLKKSRDVAAEGTSVQKEFGVKDPEPEPQGDSTVCPDAEVGEMASESPAQTVPKKKKKKGKKKAEPSQGTTPKVSKRAKTWMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTESGALPDKIGIDSEALPSEAGAKTSATTADQVLPSHDADDAGEGPSSLIREKPVPKQDENKEEKLDEEHSGELKQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHAKKIDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYKGGKVDQQEERRRQKQMKILKKELRQLLAQPLFKDDLKTKYPTQSGQPPVLGSAPRNAESALSCLSRQKKKRKRRPKEQQQQQPQPSTSAK", "length": 819, "header": "tr|F1SCG7-1|F1SCG7_PIG Isoform 1 of ATP-dependent RNA helicase OS=Sus scrofa OX=9823 GN=DDX24 PE=3 SV=2 CANONICAL=F1SCG7-1" }, "isoforms": [ { "isoform_ac": "F1SCG7-1", "url": "https://www.uniprot.org/uniprotkb/F1SCG7/entry#F1SCG7-1", "sequence": { "sequence": "MFADGQMDDLVCFEELTDYRLVSPAKNSSSLFLKEESKKRKAQAVAEGEEEGESSSSKKKMKLKKSRDVAAEGTSVQKEFGVKDPEPEPQGDSTVCPDAEVGEMASESPAQTVPKKKKKKGKKKAEPSQGTTPKVSKRAKTWMPETHDHKADVSAWKDLFVPKPVLRALSFLGFSAPTPIQALTLAPAIRDKLDILGAAETGSGKTLAFAIPMIHAVLQWQVKKKPTPVLSTTGAPPEETSTEPGAEIGSPGRAGTESGALPDKIGIDSEALPSEAGAKTSATTADQVLPSHDADDAGEGPSSLIREKPVPKQDENKEEKLDEEHSGELKQELNSKIATSEAHPKRPLLGLVLTPTRELAVQVKQHIDAVAKFTGIKTAILVGGMSTQKQQRMLNRQPEIVIATPGRLWELVKEKQPHLSNLRQLRCLVIDEADRMVEKGHFAELSQLLEMLNDSQYNPKRQTLVFSATLTLVHQAPARILHKKHAKKIDKTAKLDLLMQKIGMRGKPKVIDLTRNEATVETLTETKIHCETDEKDLYLYYFLMQYPGRTLVFANSISCIKRLSGLLKVLDIMPLTLHACMHQKQRLRNLEQFAHLEDCVLLATDVAARGLDIPKVQHVIHYQVPRTSEIYVHRSGRTARATNEGLSLMLVGPEDVINFKKIYKTLKKDEDIPLFPVQTKYMDAVKERIRLARQIEKAEYRNFQACLHNSWIEQAAAALEIELEEEMYKGGKVDQQEERRRQKQMKILKKELRQLLAQPLFKDDLKTKYPTQSGQPPVLGSAPRNAESALSCLSRQKKKRKRRPKEQQQQQPQPSTSAK", "length": 819, "header": "tr|F1SCG7-1|F1SCG7_PIG Isoform 1 of ATP-dependent RNA helicase OS=Sus scrofa OX=9823 GN=DDX24 PE=3 SV=2 CANONICAL=F1SCG7-1" }, "locus": { "chromosome": "7", "start_pos": 115347240, "end_pos": 115328398, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002742.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002742.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002673.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002673.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" } ], "pmid": "" }, { "name": "RNA helicase activity", "id": "GO:0003724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003724", "evidence": [ { "database": "UniProtKB", "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SCG7", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 453, "end_pos": 455, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCG7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 819, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCG7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCG7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" }, { "id": "PS51195", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51195" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DEAD-box RNA helicase Q", "eco_id": "ECO_0000259", "start_pos": 154, "end_pos": 182, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 186, "end_pos": 488, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 536, "end_pos": 683, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG7" }, { "id": "PRU00552", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00552" } ], "ann_type": "Motif_Annotation", "uniprotkb_annotation": "Q motif", "eco_id": "ECO_0000256", "start_pos": 154, "end_pos": 182, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 27, "end_pos": 29 }, { "start_pos": 453, "end_pos": 455 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCG8-1", "uniprot_ac": "F1SCG8", "uniprot_id": "F1SCG8_PIG", "mass": { "chemical_mass": 27283.0, "monoisotopic_mass": 27283.0 }, "refseq": { "ac": "XP_001925403", "name": "ubiquitin thioesterase OTUB2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925403" }, "gene_names": [ { "name": "OTUB2", "type": "recommended", "evidence": [ { "id": "F1SCG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" } ] }, { "name": "OTUB2", "type": "synonym", "evidence": [ { "id": "XP_001925403", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925403" } ] } ], "protein_names": [ { "name": "ubiquitinyl hydrolase 1", "type": "recommended", "evidence": [ { "id": "F1SCG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG8/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "F1SCG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG8/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin thioesterase OTUB2", "type": "synonym", "evidence": [ { "id": "XP_001925403", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925403" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCG8", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OTUB2", "url": "https://www.uniprot.org/uniprotkb/F1SCG8", "locus": { "chromosome": "7", "start_pos": 115327054, "end_pos": 115304871, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002469", "url": "https://www.ensembl.org/id/ENSSSCG00000002469" } ] } } ], "crossref": [ { "id": "F1SCG8", "url": "https://alphafold.ebi.ac.uk/entry/F1SCG8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002469", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002469", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22764", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22764", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100151873", "url": "https://www.ncbi.nlm.nih.gov/gene/100151873", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003323", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003323", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019400", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019400", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042468", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042468", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151873", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151873", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KVYCRQE", "url": "https://omabrowser.org/oma/group/KVYCRQE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCG8", "url": "https://www.orthodb.org/?gene=F1SCG8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12931", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12931", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12931:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12931:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10275", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10275", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689896", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689896", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925403", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925403", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SCG8", "url": "https://www.uniprot.org/uniprotkb/F1SCG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SCG8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSETPFNLISEKCDILSILRDHPENRIYQRKIQELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREILKFKERVLQTPNDLLAAGFEEHKFQNFFNAFYSVVELVEKDGSVSSLLKVFNDQSSSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIRDFCTHEVEPMAMECDHIQITALSQALNIALQVEYVDEMDTALNHHVFPEAAIPSVYLLYKTSHYNILYAADKR", "length": 234, "header": "tr|F1SCG8-1|F1SCG8_PIG Isoform 1 of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=OTUB2 PE=3 SV=1 CANONICAL=F1SCG8-1" }, "isoforms": [ { "isoform_ac": "F1SCG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SCG8/entry#F1SCG8-1", "sequence": { "sequence": "MSETPFNLISEKCDILSILRDHPENRIYQRKIQELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREILKFKERVLQTPNDLLAAGFEEHKFQNFFNAFYSVVELVEKDGSVSSLLKVFNDQSSSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIRDFCTHEVEPMAMECDHIQITALSQALNIALQVEYVDEMDTALNHHVFPEAAIPSVYLLYKTSHYNILYAADKR", "length": 234, "header": "tr|F1SCG8-1|F1SCG8_PIG Isoform 1 of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=OTUB2 PE=3 SV=1 CANONICAL=F1SCG8-1" }, "locus": { "chromosome": "7", "start_pos": 115323510, "end_pos": 115305023, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002741.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002741.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002672.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002672.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCG8", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151873", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151873", "resource": "KEGG Pathway" }, { "id": "R-SSC-5689896", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689896", "resource": "Reactome", "description": "Ovarian tumor domain proteases" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7G354-1", "protein_name": "Ubiquitin thioesterase", "gene_name": "Otub2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLSPGVCLAVPLGTCNGEIQPGPSPAASCPLQSETSFNLISEKCDILSILRDHPENRIYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESLLGKSREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDSSVSSLLKVFNDQCCSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMAMECDHVQITALSQALNIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAAEKH", "length": 265 }, "evidence": [ { "id": "F1SCG8", "url": "https://omabrowser.org/oma/group/F1SCG8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0LVY3-1", "protein_name": "ubiquitinyl hydrolase 1", "gene_name": "Otub2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HSASETSFNLISEKCDILSILRDHPENRIYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESLLGKGREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDSSVSSLLKVFNDQSSSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMAMECDHVQITALSQALNIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAAEKH", "length": 236 }, "evidence": [ { "id": "F1SCG8", "url": "https://omabrowser.org/oma/group/F1SCG8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MZJ2-1", "protein_name": "ubiquitinyl hydrolase 1", "gene_name": "OTUB2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSETSFNLISEKCDILSILRDHPENRIYQRKIQELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREILKFKERVLQTPNDLLVAGFEEHTFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSFSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCAHEVEPMAMECDHIQITALSQALNIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH", "length": 234 }, "evidence": [ { "id": "F1SCG8", "url": "https://omabrowser.org/oma/group/F1SCG8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96DC9-1", "protein_name": "Ubiquitin thioesterase OTUB2", "gene_name": "OTUB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSETSFNLISEKCDILSILRDHPENRIYRRKIEELSKRFTAIRKTKGDGNCFYRALGYSYLESLLGKSREIFKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDGSVSSLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTSHYNILYAADKH", "length": 234 }, "evidence": [ { "id": "F1SCG8", "url": "https://omabrowser.org/oma/group/F1SCG8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQX0-1", "protein_name": "Ubiquitin thioesterase OTUB2", "gene_name": "Otub2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSETSFNLISEKCDILSILRDHPENRIYQRKIQELSKRFTSIRKTKGDGNCFYRALGYSYLESLLGKSREILKFKERVLQTPNDLLAAGFEEHKFRNFFNAFYSVVELVEKDSSVSSLLKVFNDQSSSDRIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMAMECDHVQITALSQALNIALQVEYVDEMDTALNHHVFPEAAIPSVYLLYKTSHYNILYAAEKH", "length": 234 }, "evidence": [ { "id": "F1SCG8", "url": "https://omabrowser.org/oma/group/F1SCG8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SCG8", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" } ], "pmid": "" }, { "name": "protein K63-linked deubiquitination", "id": "GO:0070536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070536", "evidence": [ { "database": "UniProtKB", "id": "F1SCG8", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" } ], "pmid": "" }, { "name": "protein K48-linked deubiquitination", "id": "GO:0071108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071108", "evidence": [ { "database": "UniProtKB", "id": "F1SCG8", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" } ], "pmid": "" }, { "name": "protein K11-linked deubiquitination", "id": "GO:0035871", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035871", "evidence": [ { "database": "UniProtKB", "id": "F1SCG8", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ubiquitin binding", "id": "GO:0043130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043130", "evidence": [ { "database": "UniProtKB", "id": "F1SCG8", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" } ], "pmid": "" }, { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F1SCG8", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-5690843", "name": "OTUB1, (OTUB2) binds RNF128, TRAF3, TRAF6, RHOA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5690843", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5690843" } ] }, { "id": "R-SSC-6783238", "name": "OTUB1,(OTUB2) binds TP53, UBE2D1, ESR1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6783238", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783238" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCG8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 234, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCG8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCG8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCG8" }, { "id": "PS50802", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50802" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "OTU", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 231, "start_aa": "Thr", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCH1-1", "uniprot_ac": "F1SCH1", "uniprot_id": "F1SCH1_PIG", "mass": { "chemical_mass": 16458.0, "monoisotopic_mass": 16458.0 }, "refseq": { "ac": "XP_003480823", "name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480823" }, "gene_names": [ { "name": "NDUFB7", "type": "recommended", "evidence": [ { "id": "F1SCH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ] }, { "name": "NDUFB7", "type": "synonym", "evidence": [ { "id": "XP_003480823", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480823" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "type": "recommended", "evidence": [ { "id": "F1SCH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCH1/entry#names_and_taxonomy" } ] }, { "name": "Complex I-B18", "type": "synonym", "evidence": [ { "id": "F1SCH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCH1/entry#names_and_taxonomy" } ] }, { "name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "type": "synonym", "evidence": [ { "id": "XP_003480823", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480823" } ] }, { "name": "NADH-ubiquinone oxidoreductase B18 subunit", "type": "synonym", "evidence": [ { "id": "F1SCH1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCH1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1#function" }, { "database": "UniProtKB", "id": "ARBA00003195", "url": "https://www.uniprot.org/uniprotkb/ARBA00003195#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFB7", "url": "https://www.uniprot.org/uniprotkb/F1SCH1", "locus": { "chromosome": "2", "start_pos": 64723627, "end_pos": 64718906, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013778", "url": "https://www.ensembl.org/id/ENSSSCG00000013778" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013778", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013778", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737726", "url": "https://www.ncbi.nlm.nih.gov/gene/100737726", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "7V2C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V30&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V33&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V3M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VC0&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VWL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY9&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYE&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYG&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZ8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W00&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1T&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1V&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1Z&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W20&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W35&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4J&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4N&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4Q&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UD1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UD1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UER", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UER&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UES", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UES&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UET", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UET&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEX", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEX&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEY", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEY&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZO8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZOU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZP8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSK&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSM&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZXZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BUH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BWD&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BXV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CD6&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CDN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CE2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6W&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR008698", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008698", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737726", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737726", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FVYQCAH", "url": "https://omabrowser.org/oma/group/FVYQCAH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCH1", "url": "https://www.orthodb.org/?gene=F1SCH1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20900:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20900:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00007v2c", "url": "https://www.rcsb.org/structure/pdb_00007v2c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2d", "url": "https://www.rcsb.org/structure/pdb_00007v2d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2e", "url": "https://www.rcsb.org/structure/pdb_00007v2e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2f", "url": "https://www.rcsb.org/structure/pdb_00007v2f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2h", "url": "https://www.rcsb.org/structure/pdb_00007v2h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2k", "url": "https://www.rcsb.org/structure/pdb_00007v2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2r", "url": "https://www.rcsb.org/structure/pdb_00007v2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v30", "url": "https://www.rcsb.org/structure/pdb_00007v30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v31", "url": "https://www.rcsb.org/structure/pdb_00007v31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v32", "url": "https://www.rcsb.org/structure/pdb_00007v32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v33", "url": "https://www.rcsb.org/structure/pdb_00007v33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v3m", "url": "https://www.rcsb.org/structure/pdb_00007v3m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbl", "url": "https://www.rcsb.org/structure/pdb_00007vbl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbp", "url": "https://www.rcsb.org/structure/pdb_00007vbp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vc0", "url": "https://www.rcsb.org/structure/pdb_00007vc0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vwl", "url": "https://www.rcsb.org/structure/pdb_00007vwl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxs", "url": "https://www.rcsb.org/structure/pdb_00007vxs", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy1", "url": "https://www.rcsb.org/structure/pdb_00007vy1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy9", "url": "https://www.rcsb.org/structure/pdb_00007vy9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vye", "url": "https://www.rcsb.org/structure/pdb_00007vye", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyg", "url": "https://www.rcsb.org/structure/pdb_00007vyg", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyi", "url": "https://www.rcsb.org/structure/pdb_00007vyi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vys", "url": "https://www.rcsb.org/structure/pdb_00007vys", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vz8", "url": "https://www.rcsb.org/structure/pdb_00007vz8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzv", "url": "https://www.rcsb.org/structure/pdb_00007vzv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzw", "url": "https://www.rcsb.org/structure/pdb_00007vzw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w00", "url": "https://www.rcsb.org/structure/pdb_00007w00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0h", "url": "https://www.rcsb.org/structure/pdb_00007w0h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0r", "url": "https://www.rcsb.org/structure/pdb_00007w0r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0y", "url": "https://www.rcsb.org/structure/pdb_00007w0y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1o", "url": "https://www.rcsb.org/structure/pdb_00007w1o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1p", "url": "https://www.rcsb.org/structure/pdb_00007w1p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1t", "url": "https://www.rcsb.org/structure/pdb_00007w1t", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1u", "url": "https://www.rcsb.org/structure/pdb_00007w1u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1v", "url": "https://www.rcsb.org/structure/pdb_00007w1v", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1z", "url": "https://www.rcsb.org/structure/pdb_00007w1z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w20", "url": "https://www.rcsb.org/structure/pdb_00007w20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2k", "url": "https://www.rcsb.org/structure/pdb_00007w2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2l", "url": "https://www.rcsb.org/structure/pdb_00007w2l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2r", "url": "https://www.rcsb.org/structure/pdb_00007w2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2u", "url": "https://www.rcsb.org/structure/pdb_00007w2u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2y", "url": "https://www.rcsb.org/structure/pdb_00007w2y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w31", "url": "https://www.rcsb.org/structure/pdb_00007w31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w32", "url": "https://www.rcsb.org/structure/pdb_00007w32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w35", "url": "https://www.rcsb.org/structure/pdb_00007w35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4c", "url": "https://www.rcsb.org/structure/pdb_00007w4c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4d", "url": "https://www.rcsb.org/structure/pdb_00007w4d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4e", "url": "https://www.rcsb.org/structure/pdb_00007w4e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4f", "url": "https://www.rcsb.org/structure/pdb_00007w4f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4g", "url": "https://www.rcsb.org/structure/pdb_00007w4g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4j", "url": "https://www.rcsb.org/structure/pdb_00007w4j", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4k", "url": "https://www.rcsb.org/structure/pdb_00007w4k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4l", "url": "https://www.rcsb.org/structure/pdb_00007w4l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4m", "url": "https://www.rcsb.org/structure/pdb_00007w4m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4n", "url": "https://www.rcsb.org/structure/pdb_00007w4n", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4q", "url": "https://www.rcsb.org/structure/pdb_00007w4q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ud1", "url": "https://www.rcsb.org/structure/pdb_00008ud1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueo", "url": "https://www.rcsb.org/structure/pdb_00008ueo", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uep", "url": "https://www.rcsb.org/structure/pdb_00008uep", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueq", "url": "https://www.rcsb.org/structure/pdb_00008ueq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uer", "url": "https://www.rcsb.org/structure/pdb_00008uer", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ues", "url": "https://www.rcsb.org/structure/pdb_00008ues", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uet", "url": "https://www.rcsb.org/structure/pdb_00008uet", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueu", "url": "https://www.rcsb.org/structure/pdb_00008ueu", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uev", "url": "https://www.rcsb.org/structure/pdb_00008uev", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uew", "url": "https://www.rcsb.org/structure/pdb_00008uew", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uex", "url": "https://www.rcsb.org/structure/pdb_00008uex", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uey", "url": "https://www.rcsb.org/structure/pdb_00008uey", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uez", "url": "https://www.rcsb.org/structure/pdb_00008uez", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugh", "url": "https://www.rcsb.org/structure/pdb_00008ugh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugi", "url": "https://www.rcsb.org/structure/pdb_00008ugi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugj", "url": "https://www.rcsb.org/structure/pdb_00008ugj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugn", "url": "https://www.rcsb.org/structure/pdb_00008ugn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugr", "url": "https://www.rcsb.org/structure/pdb_00008ugr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zo8", "url": "https://www.rcsb.org/structure/pdb_00008zo8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zou", "url": "https://www.rcsb.org/structure/pdb_00008zou", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zp8", "url": "https://www.rcsb.org/structure/pdb_00008zp8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsk", "url": "https://www.rcsb.org/structure/pdb_00008zsk", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsl", "url": "https://www.rcsb.org/structure/pdb_00008zsl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsm", "url": "https://www.rcsb.org/structure/pdb_00008zsm", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsn", "url": "https://www.rcsb.org/structure/pdb_00008zsn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zso", "url": "https://www.rcsb.org/structure/pdb_00008zso", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsq", "url": "https://www.rcsb.org/structure/pdb_00008zsq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsr", "url": "https://www.rcsb.org/structure/pdb_00008zsr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zxz", "url": "https://www.rcsb.org/structure/pdb_00008zxz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009buh", "url": "https://www.rcsb.org/structure/pdb_00009buh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bwd", "url": "https://www.rcsb.org/structure/pdb_00009bwd", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bxv", "url": "https://www.rcsb.org/structure/pdb_00009bxv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cd6", "url": "https://www.rcsb.org/structure/pdb_00009cd6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cdn", "url": "https://www.rcsb.org/structure/pdb_00009cdn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009ce2", "url": "https://www.rcsb.org/structure/pdb_00009ce2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6h", "url": "https://www.rcsb.org/structure/pdb_00009j6h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6w", "url": "https://www.rcsb.org/structure/pdb_00009j6w", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.rcsb.org/structure/7V2C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.rcsb.org/structure/7V2D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.rcsb.org/structure/7V2E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.rcsb.org/structure/7V2F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.rcsb.org/structure/7V2H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.rcsb.org/structure/7V2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.rcsb.org/structure/7V2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.rcsb.org/structure/7V30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.rcsb.org/structure/7V31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.rcsb.org/structure/7V32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.rcsb.org/structure/7V33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.rcsb.org/structure/7V3M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.rcsb.org/structure/7VBL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.rcsb.org/structure/7VBP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.rcsb.org/structure/7VC0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.rcsb.org/structure/7VWL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.rcsb.org/structure/7VXS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.rcsb.org/structure/7VY1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.rcsb.org/structure/7VY9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.rcsb.org/structure/7VYE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.rcsb.org/structure/7VYG", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.rcsb.org/structure/7VYI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.rcsb.org/structure/7VYS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.rcsb.org/structure/7VZ8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.rcsb.org/structure/7VZV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.rcsb.org/structure/7VZW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.rcsb.org/structure/7W00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.rcsb.org/structure/7W0H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.rcsb.org/structure/7W0R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.rcsb.org/structure/7W0Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.rcsb.org/structure/7W1O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.rcsb.org/structure/7W1P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.rcsb.org/structure/7W1T", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.rcsb.org/structure/7W1U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.rcsb.org/structure/7W1V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.rcsb.org/structure/7W1Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.rcsb.org/structure/7W20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.rcsb.org/structure/7W2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.rcsb.org/structure/7W2L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.rcsb.org/structure/7W2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.rcsb.org/structure/7W2U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.rcsb.org/structure/7W2Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.rcsb.org/structure/7W31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.rcsb.org/structure/7W32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.rcsb.org/structure/7W35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.rcsb.org/structure/7W4C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.rcsb.org/structure/7W4D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.rcsb.org/structure/7W4E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.rcsb.org/structure/7W4F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.rcsb.org/structure/7W4G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.rcsb.org/structure/7W4J", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.rcsb.org/structure/7W4K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.rcsb.org/structure/7W4L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.rcsb.org/structure/7W4M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.rcsb.org/structure/7W4N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.rcsb.org/structure/7W4Q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UD1", "url": "https://www.rcsb.org/structure/8UD1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEO", "url": "https://www.rcsb.org/structure/8UEO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEP", "url": "https://www.rcsb.org/structure/8UEP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEQ", "url": "https://www.rcsb.org/structure/8UEQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UER", "url": "https://www.rcsb.org/structure/8UER", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UES", "url": "https://www.rcsb.org/structure/8UES", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UET", "url": "https://www.rcsb.org/structure/8UET", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEU", "url": "https://www.rcsb.org/structure/8UEU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEV", "url": "https://www.rcsb.org/structure/8UEV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEW", "url": "https://www.rcsb.org/structure/8UEW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEX", "url": "https://www.rcsb.org/structure/8UEX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEY", "url": "https://www.rcsb.org/structure/8UEY", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEZ", "url": "https://www.rcsb.org/structure/8UEZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.rcsb.org/structure/8UGH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.rcsb.org/structure/8UGI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.rcsb.org/structure/8UGJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.rcsb.org/structure/8UGN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.rcsb.org/structure/8UGR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.rcsb.org/structure/8ZO8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.rcsb.org/structure/8ZOU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.rcsb.org/structure/8ZP8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.rcsb.org/structure/8ZSK", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.rcsb.org/structure/8ZSL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.rcsb.org/structure/8ZSM", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.rcsb.org/structure/8ZSN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.rcsb.org/structure/8ZSO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.rcsb.org/structure/8ZSQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.rcsb.org/structure/8ZSR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.rcsb.org/structure/8ZXZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.rcsb.org/structure/9BUH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.rcsb.org/structure/9BWD", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.rcsb.org/structure/9BXV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.rcsb.org/structure/9CD6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.rcsb.org/structure/9CDN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.rcsb.org/structure/9CE2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.rcsb.org/structure/9J6H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.rcsb.org/structure/9J6W", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF05676", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05676", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6799198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003480823", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480823", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAHLARRYLGDASKEPDPLRMPTFPPDYGFPERKEREMVATQQEMNDAQLMLQQRDYCAHYLIQLLKCKRDSFPNFLACKHEQHDWDYCEHLDYVKRMKEFERERRLLQRKKRREQREAEMARGQGPGEVAPEMAL", "length": 137, "header": "tr|F1SCH1-1|F1SCH1_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Sus scrofa OX=9823 GN=NDUFB7 PE=1 SV=3 CANONICAL=F1SCH1-1" }, "isoforms": [ { "isoform_ac": "F1SCH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1/entry#F1SCH1-1", "sequence": { "sequence": "MGAHLARRYLGDASKEPDPLRMPTFPPDYGFPERKEREMVATQQEMNDAQLMLQQRDYCAHYLIQLLKCKRDSFPNFLACKHEQHDWDYCEHLDYVKRMKEFERERRLLQRKKRREQREAEMARGQGPGEVAPEMAL", "length": 137, "header": "tr|F1SCH1-1|F1SCH1_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Sus scrofa OX=9823 GN=NDUFB7 PE=1 SV=3 CANONICAL=F1SCH1-1" }, "locus": { "chromosome": "2", "start_pos": 64723564, "end_pos": 64718984, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015054.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015054.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014649.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014649.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "The coupling mechanism of mammalian mitochondrial complex I.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Gu Jinke, Liu Tianya, Guo Runyu, Zhang Laixing, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ], "reference": [ { "type": "PubMed", "id": "35145322", "url": "https://glygen.org/publication/PubMed/35145322" } ] }, { "title": "High-resolution in situ structures of mammalian respiratory supercomplexes.", "journal": "Nature", "date": "2024", "authors": "Zheng Wan, Chai Pengxin, Zhu Jiapeng, Zhang Kai", "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ], "reference": [ { "type": "PubMed", "id": "38811722", "url": "https://glygen.org/publication/PubMed/38811722" } ] } ], "pathway": [ { "id": "ssc:100737726", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737726", "resource": "KEGG Pathway" }, { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZLT1-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "gene_name": "Ndufb7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAHLTRRYLWDASVEPDPEKMPSFPPNYGLPERKERVMVATQQEMMDAQLTLQQRDYCAHYLIRLLKCKRDSFPNFVACKHEQHDWDYCEHQDYVKRMKEFERERRLLRRKKRRELREQRVAQGQGEGEVGPEMAL", "length": 137 }, "evidence": [ { "id": "F1SCH1", "url": "https://omabrowser.org/oma/group/F1SCH1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HD23-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "gene_name": "Ndufb7", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGAHLARRYLGDASVEPDPLQMPSFPPDYGFPERKERVMVATQQEMNNAQLTLQQRDYCAHYLIRLLKCKRDSFPNFLACKHERHDWDYCEHMDYVKRMKEFERERRLLQRKKRREEKAERVSRGQGEGEVGPEVAL", "length": 137 }, "evidence": [ { "id": "F1SCH1", "url": "https://omabrowser.org/oma/group/F1SCH1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P17568-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "gene_name": "NDUFB7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGAHLVRRYLGDASVEPDPLQMPTFPPDYGFPERKEREMVATQQEMMDAQLRLQLRDYCAHHLIRLLKCKRDSFPNFLACKQERHDWDYCEHRDYVMRMKEFERERRLLQRKKRREKKAAELAKGQGPGEVDPKVAL", "length": 137 }, "evidence": [ { "id": "F1SCH1", "url": "https://omabrowser.org/oma/group/F1SCH1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q02368-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "gene_name": "NDUFB7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGAHLARRYLGDASVEPDPLRMPTFPPDYGFPERKEREMVATQQEMNDAQLVLQQRDYCAHYLIRFLKCKRDSFPNFLACKHERHDWDYCEHLDYVKRMKEFERERRLLQRKKRREQREADMAKGLGPGEVAPEVAL", "length": 137 }, "evidence": [ { "id": "F1SCH1", "url": "https://omabrowser.org/oma/group/F1SCH1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9CR61-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "gene_name": "Ndufb7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGAHLTRRYLWDASVEPDPEKIPSFPPDLGFPERKERVMVATQQEMMDAQLTLQQRDYCAHYLIRLLKCKRDSFPNFLACKHEQHDWDYCEHLDYVKRMKEFERERRLLQRKKRRALKEARVAQGQGEGEVGPEVAL", "length": 137 }, "evidence": [ { "id": "F1SCH1", "url": "https://omabrowser.org/oma/group/F1SCH1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VXZ0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7", "gene_name": "ND-B18", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGNALTHYMKPDVMPGPDVVPTFDPLLGFKSRKERVMIATQEEMESAKLPLEFRDYCAHLAIAYQACRSDTFPFVYKCAHQKHEYLTCEYEDYVLRMKEFERERRLLERQKRLNKAA", "length": 117 }, "evidence": [ { "id": "F1SCH1", "url": "https://omabrowser.org/oma/group/F1SCH1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ], "pmid": "" }, { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "NADH dehydrogenase (ubiquinone) activity", "id": "GO:0008137", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008137", "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "respiratory electron transport chain", "id": "GO:0022904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022904", "evidence": [ { "database": "UniProtKB", "id": "F1SCH1", "url": "https://www.uniprot.org/uniprotkb/F1SCH1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCI4-1", "uniprot_ac": "F1SCI4", "uniprot_id": "F1SCI4_PIG", "mass": { "chemical_mass": 160036.0, "monoisotopic_mass": 160036.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "A-kinase anchor protein 13", "type": "recommended", "evidence": [ { "id": "F1SCI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCI4/entry#names_and_taxonomy" } ] }, { "name": "AKAP-Lbc", "type": "synonym", "evidence": [ { "id": "F1SCI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCI4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SCI4", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000002259", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002259", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13392", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13392", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20878", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20878", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051632", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051632", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MKPKGNF", "url": "https://omabrowser.org/oma/group/MKPKGNF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13944", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13944", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13944:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13944:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17838", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17838", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013026", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013106", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SCI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYERHKRRYSLCDISKVHRTVDVVLLKINRESWCTIEPCPDATSLLAPTQSPDCDNFLDVGLGRECASKQGVLKRESGSDSDLFHSPIEEVDSIIFSKPEEEQLACDITGSSSSTDDTASLDRHSSHGSDVSLPQISNLNRSRDQQCLNGFYSHGVGAEGRESESEPAGSGEMEEEEMDSITEVPANCSVLRSSMRSLSPFRRHSWGPGKNAASDAEMNHRSFSLEGLTGGAGNKPSSSLDINPSNTKELRHPFSGEERGDSLVSLSEEDLESGQREHRMFDQQTCHRSKQQGFNYCTSAISSPLTKSVSLMTISHSGFDNSRPFHNTSANLTESITEENFTFLPPSPSKKDFEGKSGTKVSRTFSYIKNKMSSSKKSKEKEKEKDKIKEKEKDSKEKEKDKKTVNGHTFSSITVVGPISCSQCMKPFTNKDAYTCANCSAFVHKGCRESLTSCAKVKMKQPKGCLQAHDTSSLPTVIMRNKSSQPKERPRSAVLLADETTSAPVFANRRSQQSVSLSKSVSIQNIAGVGNDENISNTWKFLSHSTDSLNKISKVNESTESLTDEGTDMNEGQLMGDFEIEAKQLEAESWSQIVDSKFLKQQKKDVVKRQEVIYELLQTEFHHLRTLKIMSDVYSRGMMADLLFEQQMVEKLFPCLDELISIHSQFFQRLLERKKDSLVDKSEKNFLIKRIGDVLVHQFSGENAERLKKTYGKFCGQHNQSVNYFKDLYTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKMLDTKARELKEQLQQKDQQILLLLEEKEMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEALKGGPLMKSAINEVEILQSLVSGSLGGTLGQTVSSPTEQEGMVGPVSLPRRAETFGGFDSHQMNASKGGEKEEGDDGQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKLLLTERTLTRTASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLEEKRRREREWEARDRALQEREVRLAQREDELRRGRQDLEREREELQQRKGTYQSDLERLRAAQRQLEREQEQLKRDRDACQVFHQHTKMMRIPSFSPSPEEAPLPSAPSIAKSGSLDSELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGLAKPKEKKEKKKKSKGSRSQPGDGPASEVSAEGEEIFC", "length": 1420, "header": "tr|F1SCI4-1|F1SCI4_PIG Isoform 1 of A-kinase anchor protein 13 OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=F1SCI4-1" }, "isoforms": [ { "isoform_ac": "F1SCI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SCI4/entry#F1SCI4-1", "sequence": { "sequence": "MYERHKRRYSLCDISKVHRTVDVVLLKINRESWCTIEPCPDATSLLAPTQSPDCDNFLDVGLGRECASKQGVLKRESGSDSDLFHSPIEEVDSIIFSKPEEEQLACDITGSSSSTDDTASLDRHSSHGSDVSLPQISNLNRSRDQQCLNGFYSHGVGAEGRESESEPAGSGEMEEEEMDSITEVPANCSVLRSSMRSLSPFRRHSWGPGKNAASDAEMNHRSFSLEGLTGGAGNKPSSSLDINPSNTKELRHPFSGEERGDSLVSLSEEDLESGQREHRMFDQQTCHRSKQQGFNYCTSAISSPLTKSVSLMTISHSGFDNSRPFHNTSANLTESITEENFTFLPPSPSKKDFEGKSGTKVSRTFSYIKNKMSSSKKSKEKEKEKDKIKEKEKDSKEKEKDKKTVNGHTFSSITVVGPISCSQCMKPFTNKDAYTCANCSAFVHKGCRESLTSCAKVKMKQPKGCLQAHDTSSLPTVIMRNKSSQPKERPRSAVLLADETTSAPVFANRRSQQSVSLSKSVSIQNIAGVGNDENISNTWKFLSHSTDSLNKISKVNESTESLTDEGTDMNEGQLMGDFEIEAKQLEAESWSQIVDSKFLKQQKKDVVKRQEVIYELLQTEFHHLRTLKIMSDVYSRGMMADLLFEQQMVEKLFPCLDELISIHSQFFQRLLERKKDSLVDKSEKNFLIKRIGDVLVHQFSGENAERLKKTYGKFCGQHNQSVNYFKDLYTKDKRFQAFVKKKMSSSVVRRLGIPECILLVTQRITKYPVLFQRILQCTKDSEAEQEDLAQSLGLVKDVIGAVNSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDLKRKKLVRDGGVFLKSAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHEEKGLFLISMGMKDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGIPSENEEEKKMLDTKARELKEQLQQKDQQILLLLEEKEMIFRDMTECSTPLPEDCSPTHSSRILFRSNTEEALKGGPLMKSAINEVEILQSLVSGSLGGTLGQTVSSPTEQEGMVGPVSLPRRAETFGGFDSHQMNASKGGEKEEGDDGQDLRRTESDSGLKKGGNANVVFMLKRNSEQVVQSVIHLHELLSTLQGVVLQQDSYIEDQKLLLTERTLTRTASRPSSLIEQEKQRSLEKQRQDLANLQRQQAQHLEEKRRREREWEARDRALQEREVRLAQREDELRRGRQDLEREREELQQRKGTYQSDLERLRAAQRQLEREQEQLKRDRDACQVFHQHTKMMRIPSFSPSPEEAPLPSAPSIAKSGSLDSELSVSPKRNSLSRTHKEKGTFHILGSTSQTSRIPEGQSQTPVCTSTSTSTRLFGLAKPKEKKEKKKKSKGSRSQPGDGPASEVSAEGEEIFC", "length": 1420, "header": "tr|F1SCI4-1|F1SCI4_PIG Isoform 1 of A-kinase anchor protein 13 OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=F1SCI4-1" }, "locus": { "chromosome": "7", "start_pos": 88218358, "end_pos": 88106443, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002516.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002516.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002454.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002454.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-193648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "resource": "Reactome", "description": "NRAGE signals death through JNK" }, { "id": "R-SSC-416482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "resource": "Reactome", "description": "G alpha (12/13) signalling events" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013026", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013026", "resource": "Reactome", "description": "RHOB GTPase cycle" }, { "id": "R-SSC-9013106", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "resource": "Reactome", "description": "RHOC GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" }, { "name": "MAP-kinase scaffold activity", "id": "GO:0005078", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005078", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of MAPK cascade", "id": "GO:0043410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043410", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" }, { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" }, { "name": "positive regulation of Rho protein signal transduction", "id": "GO:0035025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035025", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" }, { "name": "cellular response to tumor necrosis factor", "id": "GO:0071356", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071356", "evidence": [ { "database": "UniProtKB", "id": "F1SCI4", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1092, "end_pos": 1094, "annotation": "n_glycosylation_sequon" }, { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" }, { "start_pos": 331, "end_pos": 333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" }, { "start_pos": 438, "end_pos": 440, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" }, { "start_pos": 556, "end_pos": 558, "annotation": "n_glycosylation_sequon" }, { "start_pos": 719, "end_pos": 721, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 608, "end_pos": 805, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 845, "end_pos": 947, "start_aa": "Lys", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCI4" }, { "id": "PS50081", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50081" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phorbol-ester/DAG-type", "eco_id": "ECO_0000259", "start_pos": 407, "end_pos": 454, "start_aa": "Gly", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1092, "end_pos": 1094 }, { "start_pos": 140, "end_pos": 142 }, { "start_pos": 187, "end_pos": 189 }, { "start_pos": 327, "end_pos": 329 }, { "start_pos": 331, "end_pos": 333 }, { "start_pos": 340, "end_pos": 342 }, { "start_pos": 438, "end_pos": 440 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 534, "end_pos": 536 }, { "start_pos": 556, "end_pos": 558 }, { "start_pos": 719, "end_pos": 721 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCI5-1", "uniprot_ac": "F1SCI5", "uniprot_id": "F1SCI5_PIG", "mass": { "chemical_mass": 45581.0, "monoisotopic_mass": 45581.0 }, "refseq": {}, "gene_names": [ { "name": "KLHL25", "type": "recommended", "evidence": [ { "id": "F1SCI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ] } ], "protein_names": [ { "name": "Kelch-like protein 25", "type": "recommended", "evidence": [ { "id": "F1SCI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCI5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLHL25", "url": "https://www.uniprot.org/uniprotkb/F1SCI5", "locus": { "chromosome": "7", "start_pos": 88262385, "end_pos": 88264691, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002258", "url": "https://www.ensembl.org/id/ENSSSCG00000002258" } ] } } ], "crossref": [ { "id": "F1SCI5", "url": "https://alphafold.ebi.ac.uk/entry/F1SCI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002258", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002258", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF487", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF487", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCI5-1", "url": "https://www.uniprot.org/uniprotkb/F1SCI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVSVHETRKSRSSTGSMNITLFHKASHPDCVLAHLNTLRKHCMFTDVTLWAGDRAFPCHRAVLAASSRYFEAMFSHGLRESRDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQFHDVRDAAAEFLEKNLFPSNCLGMMLLSDAHQCRRLYEFSWRMCLVHFETVRQSEDFNSLSKDTLLDLISSDELEAEDERVVFEAILQWVKHDPEQRKAHLPELLRGVRLALLPSDCLTEAVSGEALLMADERTRLIVDEALRCKTRILQNDGVVTSPCARPRKAGHTLLILGGQTFMCDKIYQVDHKAKEIIPKADLPSPVYVTGGRGSENGVSKDVWVYNTVHEEWSKAAPMLIARFGHGSAELENCLYVVGGHTCRGQSPGWGSRCKASLVWPP", "length": 405, "header": "tr|F1SCI5-1|F1SCI5_PIG Isoform 1 of Kelch-like protein 25 OS=Sus scrofa OX=9823 GN=KLHL25 PE=4 SV=3 CANONICAL=F1SCI5-1" }, "isoforms": [ { "isoform_ac": "F1SCI5-1", "url": "https://www.uniprot.org/uniprotkb/F1SCI5/entry#F1SCI5-1", "sequence": { "sequence": "MSVSVHETRKSRSSTGSMNITLFHKASHPDCVLAHLNTLRKHCMFTDVTLWAGDRAFPCHRAVLAASSRYFEAMFSHGLRESRDDTVNFQDNLHPEVLELLLDFAYSSRIVINEENAESLLEAGDMLQFHDVRDAAAEFLEKNLFPSNCLGMMLLSDAHQCRRLYEFSWRMCLVHFETVRQSEDFNSLSKDTLLDLISSDELEAEDERVVFEAILQWVKHDPEQRKAHLPELLRGVRLALLPSDCLTEAVSGEALLMADERTRLIVDEALRCKTRILQNDGVVTSPCARPRKAGHTLLILGGQTFMCDKIYQVDHKAKEIIPKADLPSPVYVTGGRGSENGVSKDVWVYNTVHEEWSKAAPMLIARFGHGSAELENCLYVVGGHTCRGQSPGWGSRCKASLVWPP", "length": 405, "header": "tr|F1SCI5-1|F1SCI5_PIG Isoform 1 of Kelch-like protein 25 OS=Sus scrofa OX=9823 GN=KLHL25 PE=4 SV=3 CANONICAL=F1SCI5-1" }, "locus": { "chromosome": "7", "start_pos": 88264691, "end_pos": 88262388, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002515.3", "url": "https://www.ensembl.org/id/ENSSSCT00000002515.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002453.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002453.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation", "id": "GO:0032831", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032831", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "pmid": "" }, { "name": "negative regulation of fatty acid biosynthetic process", "id": "GO:0045717", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045717", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "pmid": "" }, { "name": "regulation of translational initiation", "id": "GO:0006446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006446", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "pmid": "" }, { "name": "positive regulation of fatty acid oxidation", "id": "GO:0046321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046321", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "F1SCI5", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCI5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 405, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCI5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCI5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCI5" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 114, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 19, "end_pos": 21 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCJ1-1", "uniprot_ac": "F1SCJ1", "uniprot_id": "F1SCJ1_PIG", "mass": { "chemical_mass": 20767.0, "monoisotopic_mass": 20767.0 }, "refseq": { "ac": "XP_003123195", "name": "trafficking protein particle complex subunit 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123195" }, "gene_names": [ { "name": "TRAPPC5", "type": "recommended", "evidence": [ { "id": "F1SCJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1" } ] }, { "name": "TRAPPC5", "type": "synonym", "evidence": [ { "id": "XP_003123195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123195" } ] } ], "protein_names": [ { "name": "Trafficking protein particle complex subunit 5", "type": "recommended", "evidence": [ { "id": "F1SCJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1/entry#names_and_taxonomy" } ] }, { "name": "trafficking protein particle complex subunit 5", "type": "synonym", "evidence": [ { "id": "XP_003123195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123195" } ] } ], "function": [ { "annotation": "May play a role in vesicular transport from endoplasmic reticulum to Golgi.", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1#function" }, { "database": "UniProtKB", "id": "PIRNR017479", "url": "https://www.uniprot.org/uniprotkb/PIRNR017479#function" }, { "database": "UniProtKB", "id": "ARBA00002910", "url": "https://www.uniprot.org/uniprotkb/ARBA00002910#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCJ1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRAPPC5", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1", "locus": { "chromosome": "2", "start_pos": 71470445, "end_pos": 71472549, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013573", "url": "https://www.ensembl.org/id/ENSSSCG00000013573" } ] } } ], "crossref": [ { "id": "F1SCJ1", "url": "https://alphafold.ebi.ac.uk/entry/F1SCJ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013573", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013573", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14943", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14943", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524729", "url": "https://www.ncbi.nlm.nih.gov/gene/100524729", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524729", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524729", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YMVKFDD", "url": "https://omabrowser.org/oma/group/YMVKFDD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCJ1", "url": "https://www.orthodb.org/?gene=F1SCJ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20902", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20902", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20902:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20902:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04051", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04051", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003123195", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123195", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SCJ1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDRALEGR", "length": 188, "header": "tr|F1SCJ1-1|F1SCJ1_PIG Isoform 1 of Trafficking protein particle complex subunit 5 OS=Sus scrofa OX=9823 GN=TRAPPC5 PE=1 SV=1 CANONICAL=F1SCJ1-1" }, "isoforms": [ { "isoform_ac": "F1SCJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1/entry#F1SCJ1-1", "sequence": { "sequence": "MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDRALEGR", "length": 188, "header": "tr|F1SCJ1-1|F1SCJ1_PIG Isoform 1 of Trafficking protein particle complex subunit 5 OS=Sus scrofa OX=9823 GN=TRAPPC5 PE=1 SV=1 CANONICAL=F1SCJ1-1" }, "locus": { "chromosome": "2", "start_pos": 71471043, "end_pos": 71470480, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014825.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014825.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014424.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014424.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524729", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524729", "resource": "KEGG Pathway" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9T2C1-1", "protein_name": "Trafficking protein particle complex subunit 5", "gene_name": "TRAPPC5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDRALEGR", "length": 188 }, "evidence": [ { "id": "F1SCJ1", "url": "https://omabrowser.org/oma/group/F1SCJ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KWV8-1", "protein_name": "Trafficking protein particle complex subunit 5", "gene_name": "Trappc5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEARFTRGKSALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDRALEGR", "length": 188 }, "evidence": [ { "id": "F1SCJ1", "url": "https://omabrowser.org/oma/group/F1SCJ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HWW9-1", "protein_name": "Trafficking protein particle complex subunit 5", "gene_name": "Trappc5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEARFTRGKSALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDRALEGR", "length": 188 }, "evidence": [ { "id": "F1SCJ1", "url": "https://omabrowser.org/oma/group/F1SCJ1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q03337-1", "protein_name": "Trafficking protein particle complex subunit 31", "gene_name": "TRS31", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSQRIIQPSASDQQFPGKSDGYEYTVGPKQAITSEASTTYIPSRIYSESLLFKRQEASLSAMAFLFQEMISQLHRTCKTAGDFETKLSDYGHNIGIRLLELLNFRASVSPSSLPRASAFLSQNESSSKLSNASNSPGMLANSSTATSASANERLQEKQTESLSNYITKMRRRDLKILDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGENVSCEYFVCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQVLDREGLRFG", "length": 283 }, "evidence": [ { "id": "F1SCJ1", "url": "https://omabrowser.org/oma/group/F1SCJ1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54YG5-1", "protein_name": "Trafficking protein particle complex subunit 5", "gene_name": "trappc5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKAPVNIVDRPLSKGKGEINISSFAFLFSEMIQYCQDRIKAGHELEKKLSDMGYSIGPRLLELLCVREKNSKRETKLLGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISLPKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPEVIERNA", "length": 186 }, "evidence": [ { "id": "F1SCJ1", "url": "https://omabrowser.org/oma/group/F1SCJ1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8IUR0-1", "protein_name": "Trafficking protein particle complex subunit 5", "gene_name": "TRAPPC5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDRALEGR", "length": 188 }, "evidence": [ { "id": "F1SCJ1", "url": "https://omabrowser.org/oma/group/F1SCJ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CQA1-1", "protein_name": "Trafficking protein particle complex subunit 5", "gene_name": "Trappc5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEARFTRGKSALLERALVRPRTEVSLSAFALLFSELVQHCQSRVFSVAELQARLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIARDRALEGR", "length": 188 }, "evidence": [ { "id": "F1SCJ1", "url": "https://omabrowser.org/oma/group/F1SCJ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FGU1-1", "protein_name": "Trafficking protein particle complex subunit", "gene_name": "TRAPPC5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIGVGKMKQYSNVLDKPLSKGKQEVSLTAFAFLFSELVQYNQTQVDNIAELERRLEDAGYAVGSRVLELLCNREKGNRRETRLLGILSFVHSTVWKVLFGKVADSLEKGTEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVKGVLDNAGFPAVVTAHFVPIEGQQRPRTTILIKFADEVLKREARLSQ", "length": 195 }, "evidence": [ { "id": "F1SCJ1", "url": "https://omabrowser.org/oma/group/F1SCJ1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1" } ], "pmid": "" }, { "name": "TRAPPIII protein complex", "id": "GO:1990072", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990072", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1" } ], "pmid": "" }, { "name": "TRAPPI protein complex", "id": "GO:1990070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990070", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1" } ], "pmid": "" }, { "name": "TRAPPII protein complex", "id": "GO:1990071", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990071", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCJ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 188, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCJ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCJ1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCJ8-1", "uniprot_ac": "F1SCJ8", "uniprot_id": "F1SCJ8_PIG", "mass": { "chemical_mass": 42595.0, "monoisotopic_mass": 42595.0 }, "refseq": {}, "gene_names": [ { "name": "ARRDC4", "type": "recommended", "evidence": [ { "id": "F1SCJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" } ] } ], "protein_names": [ { "name": "Arrestin domain containing 4", "type": "synonym", "evidence": [ { "id": "F1SCJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCJ8", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARRDC4", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8", "locus": { "chromosome": "7", "start_pos": 81656761, "end_pos": 81669509, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002252", "url": "https://www.ensembl.org/id/ENSSSCG00000002252" } ] } } ], "crossref": [ { "id": "F1SCJ8", "url": "https://alphafold.ebi.ac.uk/entry/F1SCJ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002252", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002252", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011022", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011022", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11188", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11188", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11188:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11188:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00339", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00339", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SCJ8", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCJ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGEAGSAAAVVGSEGRVKSLGLVFEDERKGCYSSGERVAGHVLLEAAEPVTLRALRLEAHGRATAAWGPSAGAAAPAAASEVEYLNVRLSLREPPAGEGILLLQPGKHEFPFSFQLPSEPLVTSFTGKYGSIQYCVRAILERPRVPDQSVKRELQVISHIDVNTPALLTPVLKTQEKMVGCWFFTSGPVSLSAKIERKGYCNAAIFQTQTYLASGKTKTVRHMVANVRGNHIASGSTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVIGTVPYNGFGSRNSSIASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSRHVPPYPQPPNCEGDSCCPMFACIQEFRFQPPPLYSEVDPHPSDIEETQPVSFIL", "length": 392, "header": "tr|F1SCJ8-1|F1SCJ8_PIG Isoform 1 of Arrestin domain containing 4 OS=Sus scrofa OX=9823 GN=ARRDC4 PE=3 SV=2 CANONICAL=F1SCJ8-1" }, "isoforms": [ { "isoform_ac": "F1SCJ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8/entry#F1SCJ8-1", "sequence": { "sequence": "MGGEAGSAAAVVGSEGRVKSLGLVFEDERKGCYSSGERVAGHVLLEAAEPVTLRALRLEAHGRATAAWGPSAGAAAPAAASEVEYLNVRLSLREPPAGEGILLLQPGKHEFPFSFQLPSEPLVTSFTGKYGSIQYCVRAILERPRVPDQSVKRELQVISHIDVNTPALLTPVLKTQEKMVGCWFFTSGPVSLSAKIERKGYCNAAIFQTQTYLASGKTKTVRHMVANVRGNHIASGSTDTWNGKTLKIPPVTPSILDCCIIRVDYSLAVYIHIPGAKKLMLELPLVIGTVPYNGFGSRNSSIASQFIMDMSWLTLTLPEQPEAPPNYADVVSEEEFSRHVPPYPQPPNCEGDSCCPMFACIQEFRFQPPPLYSEVDPHPSDIEETQPVSFIL", "length": 392, "header": "tr|F1SCJ8-1|F1SCJ8_PIG Isoform 1 of Arrestin domain containing 4 OS=Sus scrofa OX=9823 GN=ARRDC4 PE=3 SV=2 CANONICAL=F1SCJ8-1" }, "locus": { "chromosome": "7", "start_pos": 81669354, "end_pos": 81659492, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002508.7", "url": "https://www.ensembl.org/id/ENSSSCT00000002508.7" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002446.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002446.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ8", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ8", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ8", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ8", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein K63-linked ubiquitination", "id": "GO:0070534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070534", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ8", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" } ], "pmid": "" }, { "name": "positive regulation of interferon-beta production", "id": "GO:0032728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032728", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ8", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "F1SCJ8", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCJ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 392, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCJ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCJ8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCJ8" }, { "id": "SM01017", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01017" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Arrestin C-terminal-like", "eco_id": "ECO_0000259", "start_pos": 186, "end_pos": 292, "start_aa": "Thr", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 299, "end_pos": 301 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCR5-1", "uniprot_ac": "F1SCR5", "uniprot_id": "F1SCR5_PIG", "mass": { "chemical_mass": 45047.0, "monoisotopic_mass": 45047.0 }, "refseq": { "ac": "XP_020943485", "name": "neurotensin receptor type 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943485" }, "gene_names": [ { "name": "NTSR2", "type": "recommended", "evidence": [ { "id": "F1SCR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCR5" } ] }, { "name": "NTSR2", "type": "synonym", "evidence": [ { "id": "XP_020943485", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943485" } ] } ], "protein_names": [ { "name": "Neurotensin receptor 2", "type": "synonym", "evidence": [ { "id": "F1SCR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCR5/entry#names_and_taxonomy" } ] }, { "name": "neurotensin receptor type 2", "type": "synonym", "evidence": [ { "id": "XP_020943485", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943485" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCR5", "url": "https://www.uniprot.org/uniprotkb/F1SCR5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NTSR2", "url": "https://www.uniprot.org/uniprotkb/F1SCR5", "locus": { "chromosome": "3", "start_pos": 125091828, "end_pos": 125083396, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008625", "url": "https://www.ensembl.org/id/ENSSSCG00000008625" } ] } } ], "crossref": [ { "id": "F1SCR5", "url": "https://alphafold.ebi.ac.uk/entry/F1SCR5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008625", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008625", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100620275", "url": "https://www.ncbi.nlm.nih.gov/gene/100620275", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003984", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003984", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003986", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620275", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620275", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YSFRLWG", "url": "https://omabrowser.org/oma/group/YSFRLWG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCR5", "url": "https://www.orthodb.org/?gene=F1SCR5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24243", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24243", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24243:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24243:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-375276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943485", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943485", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SCR5", "url": "https://www.uniprot.org/uniprotkb/F1SCR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCR5-1", "url": "https://www.uniprot.org/uniprotkb/F1SCR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPSSRRPPGPSPGSALSLDARLGVDTRLWAKVLFTALYSLIFALGTAGNALSVHVVLKARAGPPGRLRYHVLSLALSALLLLLVCVPVELYNFVWFHYPWVFGDLGCRAYYFVRELCAYATVLGAACLSAERCLAVCRPLRARRLLTPRRTRRLLSLVWAASLGLALPMAVIMGQKHELETASGEPEPASRVCTALVSRTTLQVCIQVNVLVSFVLPLALTAFLNGVTVSHLAALCSQVPTPSATGSSAPSPLQLVCEERKTLSLGRQASLVRHKGSGRIRGLQLSIQVLRGIVAVYVVCWMPYHARRLMYCYVPDDAWTDKLYDFYHYFYMVTNTLFYVSSAVTPVLYNAVSSSFRKLFLEALGSLCRERHPVEPLFRGAREPRPGACGVRPWGSPRNPRLDEVEE", "length": 408, "header": "tr|F1SCR5-1|F1SCR5_PIG Isoform 1 of Neurotensin receptor 2 OS=Sus scrofa OX=9823 GN=NTSR2 PE=3 SV=3 CANONICAL=F1SCR5-1" }, "isoforms": [ { "isoform_ac": "F1SCR5-1", "url": "https://www.uniprot.org/uniprotkb/F1SCR5/entry#F1SCR5-1", "sequence": { "sequence": "MEPSSRRPPGPSPGSALSLDARLGVDTRLWAKVLFTALYSLIFALGTAGNALSVHVVLKARAGPPGRLRYHVLSLALSALLLLLVCVPVELYNFVWFHYPWVFGDLGCRAYYFVRELCAYATVLGAACLSAERCLAVCRPLRARRLLTPRRTRRLLSLVWAASLGLALPMAVIMGQKHELETASGEPEPASRVCTALVSRTTLQVCIQVNVLVSFVLPLALTAFLNGVTVSHLAALCSQVPTPSATGSSAPSPLQLVCEERKTLSLGRQASLVRHKGSGRIRGLQLSIQVLRGIVAVYVVCWMPYHARRLMYCYVPDDAWTDKLYDFYHYFYMVTNTLFYVSSAVTPVLYNAVSSSFRKLFLEALGSLCRERHPVEPLFRGAREPRPGACGVRPWGSPRNPRLDEVEE", "length": 408, "header": "tr|F1SCR5-1|F1SCR5_PIG Isoform 1 of Neurotensin receptor 2 OS=Sus scrofa OX=9823 GN=NTSR2 PE=3 SV=3 CANONICAL=F1SCR5-1" }, "locus": { "chromosome": "3", "start_pos": 125091561, "end_pos": 125083432, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009436.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009436.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009194.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009194.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 12, "start_aa": "Ser", "end_pos": 12, "end_aa": "Ser", "residue": "Ser", "site_lbl": "Ser12", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000010000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 242, "start_aa": "Thr", "end_pos": 242, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr242", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCR5", "url": "https://www.uniprot.org/uniprotkb/F1SCR5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620275", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620275", "resource": "KEGG Pathway" }, { "id": "R-SSC-375276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375276", "resource": "Reactome", "description": "Peptide ligand-binding receptors" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" } ], "orthologs": [ { "uniprot_canonical_ac": "O95665-1", "protein_name": "Neurotensin receptor type 2", "gene_name": "NTSR2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METSSPRPPRPSSNPGLSLDARLGVDTRLWAKVLFTALYALIWALGAAGNALSAHVVLKARAGRAGRLRHHVLSLALAGLLLLLVGVPVELYSFVWFHYPWVFGDLGCRGYYFVHELCAYATVLSVAGLSAERCLAVCQPLRARSLLTPRRTRWLVALSWAASLGLALPMAVIMGQKHELETADGEPEPASRVCTVLVSRTALQVFIQVNVLVSFVLPLALTAFLNGVTVSHLLALCSQVPSTSTPGSSTPSRLELLSEEGLLSFIVWKKTFIQGGQVSLVRHKDVRRIRSLQRSVQVLRAIVVMYVICWLPYHARRLMYCYVPDDAWTDPLYNFYHYFYMVTNTLFYVSSAVTPLLYNAVSSSFRKLFLEAVSSLCGEHHPMKRLPPKPQSPTLMDTASGFGDPPETRT", "length": 410 }, "evidence": [ { "id": "F1SCR5", "url": "https://omabrowser.org/oma/group/F1SCR5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P70310-1", "protein_name": "Neurotensin receptor type 2", "gene_name": "Ntsr2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METSSLWPPRPSPSAGLSLEARLGVDTRLWAKVLFTALYSLIFALGTAGNALSVHVVLKARAGRPGRLRYHVLSLALSALLLLLISVPMELYNFVWSHYPWVFGDLGCRGYYFVRELCAYATVLSVASLSAERCLAVCQPLRARRLLTPRRTRRLLSLVWVASLGLALPMAVIMGQKHEMERADGEPEPASRVCTVLVSRATLQVFIQVNVLVSFVLPLALTAFLNGITVNHLVALYSQVPSASAQVNSIPSRLELLSEEGLLGFITWRKTLSLGVQASLVRHKDASQIRSLQHSAQVLRAIVAVYVICWLPYHARRLMYCYIPDDGWTDELYDFYHYFYMVTNTLFYVSSAVTPVLYNAVSSSFRKLFLESLSSLCGEQRSVVPLPQEAPESTTSTYSFRLWGSPRNPSLGEIQV", "length": 416 }, "evidence": [ { "id": "F1SCR5", "url": "https://omabrowser.org/oma/group/F1SCR5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q63384-1", "protein_name": "Neurotensin receptor type 2", "gene_name": "Ntsr2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METSSPWPPRPSPSAGLSLEARLGVDTRLWAKVLFTALYSLIFAFGTAGNALSVHVVLKARAGRPGRLRYHVLSLALSALLLLLVSMPMELYNFVWSHYPWVFGDLGCRGYYFVRELCAYATVLSVASLSAERCLAVCQPLRARRLLTPRRTRRLLSLVWVASLGLALPMAVIMGQKHEVESADGEPEPASRVCTVLVSRATLQVFIQVNVLVSFALPLALTAFLNGITVNHLMALYSQVPSASAQVSSIPSRLELLSEEGLLGFITWRKTLSLGVQASLVRHKDASQIRSLQHSAQVLRAIVAVYVICWLPYHARRLMYCYIPDDGWTNELYDFYHYFYMVTNTLFYVSSAVTPILYNAVSSSFRKLFLESLGSLCGEQHSLVPLPQEAPESTTSTYSFRLWGSPRNPSLGEIQV", "length": 416 }, "evidence": [ { "id": "F1SCR5", "url": "https://omabrowser.org/oma/group/F1SCR5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled neurotensin receptor activity", "id": "GO:0016492", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016492", "evidence": [ { "database": "UniProtKB", "id": "F1SCR5", "url": "https://www.uniprot.org/uniprotkb/F1SCR5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCR5", "url": "https://www.uniprot.org/uniprotkb/F1SCR5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "neuropeptide signaling pathway", "id": "GO:0007218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007218", "evidence": [ { "database": "UniProtKB", "id": "F1SCR5", "url": "https://www.uniprot.org/uniprotkb/F1SCR5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCR5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 408, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCR5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCR5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCR5" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 350, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 12, 242 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCS2-1", "uniprot_ac": "F1SCS2", "uniprot_id": "F1SCS2_PIG", "mass": { "chemical_mass": 49670.0, "monoisotopic_mass": 49670.0 }, "refseq": { "ac": "XP_003125394", "name": "N-myc proto-oncogene protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125394" }, "gene_names": [ { "name": "MYCN", "type": "recommended", "evidence": [ { "id": "F1SCS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ] }, { "name": "MYCN", "type": "synonym", "evidence": [ { "id": "XP_003125394", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125394" } ] } ], "protein_names": [ { "name": "Myc proto-oncogene protein", "type": "recommended", "evidence": [ { "id": "F1SCS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS2/entry#names_and_taxonomy" } ] }, { "name": "N-myc proto-oncogene protein", "type": "synonym", "evidence": [ { "id": "XP_003125394", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125394" } ] }, { "name": "Proto-oncogene c-Myc", "type": "synonym", "evidence": [ { "id": "F1SCS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS2/entry#names_and_taxonomy" } ] }, { "name": "Transcription factor p64", "type": "synonym", "evidence": [ { "id": "F1SCS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. Binds to the VEGFA promoter, promoting VEGFA production and subsequent sprouting angiogenesis. Regulator of somatic reprogramming, controls self-renewal of embryonic stem cells. Functions with TAF6L to activate target gene expression through RNA polymerase II pause release. Positively regulates transcription of HNRNPA1, HNRNPA2 and PTBP1 which in turn regulate splicing of pyruvate kinase PKM by binding repressively to sequences flanking PKM exon 9, inhibiting exon 9 inclusion and resulting in exon 10 inclusion and production of the PKM M2 isoform.", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2#function" }, { "database": "UniProtKB", "id": "ARBA00045233", "url": "https://www.uniprot.org/uniprotkb/ARBA00045233#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYCN", "url": "https://www.uniprot.org/uniprotkb/F1SCS2", "locus": { "chromosome": "3", "start_pos": 121543109, "end_pos": 121549046, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008618", "url": "https://www.ensembl.org/id/ENSSSCG00000008618" } ] } } ], "crossref": [ { "id": "F1SCS2", "url": "https://alphafold.ebi.ac.uk/entry/F1SCS2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008618", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008618", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11456", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11456", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518190", "url": "https://www.ncbi.nlm.nih.gov/gene/100518190", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002418", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002418", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012682", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012682", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518190", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518190", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PHGKEAP", "url": "https://omabrowser.org/oma/group/PHGKEAP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCS2", "url": "https://www.orthodb.org/?gene=F1SCS2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45851", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45851", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01056", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01056", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125394", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125394", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SCS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSCTASTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRAFPEHSPEPPNWATEMLLPEADLWGNPAEEDAFGLGGLGGLTPNPVILQDCMWSGFSAREKLERAVSEKLQHGRPPAAGPAAPVPGAGATSPGGRGHSAAAAGPGRAGAALPTELAHPAAECVDPAVVFPFPVNKREPAPAPAAPAVAPAAGTVIVSGASAAAPAGAPVAALPRPGGRPASGSDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNSKAVTTFTITVRPKSAALGPGRAPAGELILKRCVPIHQQHNYAAPSPYVESEDAPPQKKMKSETSPRPLKSVVPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC", "length": 465, "header": "tr|F1SCS2-1|F1SCS2_PIG Isoform 1 of Myc proto-oncogene protein OS=Sus scrofa OX=9823 GN=MYCN PE=4 SV=1 CANONICAL=F1SCS2-1" }, "isoforms": [ { "isoform_ac": "F1SCS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SCS2/entry#F1SCS2-1", "sequence": { "sequence": "MPSCTASTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRAFPEHSPEPPNWATEMLLPEADLWGNPAEEDAFGLGGLGGLTPNPVILQDCMWSGFSAREKLERAVSEKLQHGRPPAAGPAAPVPGAGATSPGGRGHSAAAAGPGRAGAALPTELAHPAAECVDPAVVFPFPVNKREPAPAPAAPAVAPAAGTVIVSGASAAAPAGAPVAALPRPGGRPASGSDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNSKAVTTFTITVRPKSAALGPGRAPAGELILKRCVPIHQQHNYAAPSPYVESEDAPPQKKMKSETSPRPLKSVVPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC", "length": 465, "header": "tr|F1SCS2-1|F1SCS2_PIG Isoform 1 of Myc proto-oncogene protein OS=Sus scrofa OX=9823 GN=MYCN PE=4 SV=1 CANONICAL=F1SCS2-1" }, "locus": { "chromosome": "3", "start_pos": 121547640, "end_pos": 121544113, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009429.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009429.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009187.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009187.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 43, "start_aa": "Thr", "end_pos": 43, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr43", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518190", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518190", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C3E1-1", "protein_name": "V-myc avian myelocytomatosis viral onco neuroblastoma derived homolog", "gene_name": "MYCN", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPGMISKNPDLEFDSLQPCFYPDEDDFYLCGPDSAPPGEDIWKKFELLPTPPLSPSRAGLQEHPPGGAPLPWGGAALGSCRPADPLDWASELLLLPPEAELWGSTDGADFFETGLGASNNLNSIIIQDCMWSGFSAREKLERAVSEKLQSKPPAAAPPPPPPVVPTAAVAAANSPSAGPGRAELGGSVPECVDPAVVFPFPVNKREAAVPSGGETPRGGRPPRPAGESRASSSSGDDTLSDSDDEDEEEEDDEEEIDVVTVEKRRSSSNKAVTTLTITVRPKNTTFPSVRTQQNELILKRCAPIHQQHNYAAPSPYMESEDVPPQKKLKAEVPRPVKPMIQPKSKSSSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHSLQAEEQKLLLEKEKLQARQQQLLKKIEYKRTC", "length": 441 }, "evidence": [ { "id": "F1SCS2", "url": "https://omabrowser.org/oma/group/F1SCS2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P03966-1", "protein_name": "N-myc proto-oncogene protein", "gene_name": "Mycn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPSCTASTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRAFPEHSPEPSNWATEMLLPEADLWGNPAEEDAFGLGGLGGLTPNPVILQDCMWSGFSAREKLERAVNEKLQHGHGPPGVSSACSAPGVGASSPGGRALGGSSSASHTGATLPTDLSHPAAECVDPAVVFPFPVNKRESASVPAAPTSAPATSAAVTSVSVPATAPVAAPARAGGRPASSGEAKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNNKAVTTFTITVRPKTSALGLGRAQPGELILKRCVPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLKSVVPAKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHALQANEHQLLLEKEKLQARQQQLLKKIEHARTC", "length": 462 }, "evidence": [ { "id": "F1SCS2", "url": "https://omabrowser.org/oma/group/F1SCS2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04198-1", "protein_name": "N-myc proto-oncogene protein", "gene_name": "MYCN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRGFAEHSSEPPSWVTEMLLENELWGSPAEEDAFGLGGLGGLTPNPVILQDCMWSGFSAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELAHPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPGGRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTITVRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLKSVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC", "length": 464 }, "evidence": [ { "id": "F1SCS2", "url": "https://omabrowser.org/oma/group/F1SCS2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q63379-1", "protein_name": "N-myc proto-oncogene protein", "gene_name": "Mycn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPSCTASTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPPLSPSRAFPEHSPEPSNWATEMLLPEADLWGNPAEEDAFGLGGLGGLTPNPVILQDCMWSGFSAREKLERAVNEKLQHGHGPPGASSSCPAPGVGASSSGGRALGGSASAGRTGATLPTDLSHPAAECVDPAVVFPFPVNKRESASVPAAPTSAPATSAVVTSVSVPAVAPVAAPARGSGRPANSGEHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNNKAVTTFTITVRPKTSALGLGRAQPGELILKRCVPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLKSVVPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKVVILKKATEYVHALQANEHQLLLEKEKLQARQQQLLKKIEHARTC", "length": 462 }, "evidence": [ { "id": "F1SCS2", "url": "https://omabrowser.org/oma/group/F1SCS2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "negative regulation of gene expression", "id": "GO:0010629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010629", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "negative regulation of reactive oxygen species metabolic process", "id": "GO:2000378", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000378", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "kinase binding", "id": "GO:0019900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019900", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SCS2", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCS2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 465, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCS2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCS2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS2" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 382, "end_pos": 434, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 43 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCS7-1", "uniprot_ac": "F1SCS7", "uniprot_id": "F1SCS7_PIG", "mass": { "chemical_mass": 20898.0, "monoisotopic_mass": 20898.0 }, "refseq": {}, "gene_names": [ { "name": "MSGN1", "type": "recommended", "evidence": [ { "id": "F1SCS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ] } ], "protein_names": [ { "name": "Mesogenin-1", "type": "recommended", "evidence": [ { "id": "F1SCS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS7/entry#names_and_taxonomy" } ] }, { "name": "Paraxial mesoderm-specific mesogenin1", "type": "synonym", "evidence": [ { "id": "F1SCS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS7/entry#names_and_taxonomy" } ] }, { "name": "pMesogenin1", "type": "synonym", "evidence": [ { "id": "F1SCS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Involved in specifying the paraxial, but not dorsal, mesoderm. May regulate the expression of T-box transcription factors required for mesoderm formation and differentiation.", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7#function" }, { "database": "UniProtKB", "id": "ARBA00055522", "url": "https://www.uniprot.org/uniprotkb/ARBA00055522#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MSGN1", "url": "https://www.uniprot.org/uniprotkb/F1SCS7", "locus": { "chromosome": "3", "start_pos": 120034043, "end_pos": 120034624, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026538", "url": "https://www.ensembl.org/id/ENSSSCG00000026538" } ] } } ], "crossref": [ { "id": "F1SCS7", "url": "https://alphafold.ebi.ac.uk/entry/F1SCS7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026538", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026538", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18939", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18939", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR20937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20937:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20937:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCS7-1", "url": "https://www.uniprot.org/uniprotkb/F1SCS7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MANLRETFLSLEDGLGSSDSPGLLSSWDWKDRAGPFELNQASPTQSLSPAPSLESYSSSPCPAVARLPCGHGGANSGGGDDCGGLGTGGLVEVDYNMLAFQPAYLQGAGGAKAQKGTKVRMSVQRRRKASEREKLRMRTLADALHTLRNYLPPVYSQRGQPLTKIQTLKYTIKYIGELTDLLNSGREPRPQSAR", "length": 194, "header": "tr|F1SCS7-1|F1SCS7_PIG Isoform 1 of Mesogenin-1 OS=Sus scrofa OX=9823 GN=MSGN1 PE=4 SV=3 CANONICAL=F1SCS7-1" }, "isoforms": [ { "isoform_ac": "F1SCS7-1", "url": "https://www.uniprot.org/uniprotkb/F1SCS7/entry#F1SCS7-1", "sequence": { "sequence": "MANLRETFLSLEDGLGSSDSPGLLSSWDWKDRAGPFELNQASPTQSLSPAPSLESYSSSPCPAVARLPCGHGGANSGGGDDCGGLGTGGLVEVDYNMLAFQPAYLQGAGGAKAQKGTKVRMSVQRRRKASEREKLRMRTLADALHTLRNYLPPVYSQRGQPLTKIQTLKYTIKYIGELTDLLNSGREPRPQSAR", "length": 194, "header": "tr|F1SCS7-1|F1SCS7_PIG Isoform 1 of Mesogenin-1 OS=Sus scrofa OX=9823 GN=MSGN1 PE=4 SV=3 CANONICAL=F1SCS7-1" }, "locus": { "chromosome": "3", "start_pos": 120034624, "end_pos": 120034043, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028291.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028291.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026792.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026792.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" }, { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" }, { "name": "mesoderm formation", "id": "GO:0001707", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001707", "evidence": [ { "database": "UniProtKB", "id": "F1SCS7", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCS7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 194, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCS7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCS7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCS7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCS7" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 124, "end_pos": 178, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCT1-1", "uniprot_ac": "F1SCT1", "uniprot_id": "F1SCT1_PIG", "mass": { "chemical_mass": 33567.0, "monoisotopic_mass": 33567.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100156664", "type": "recommended", "evidence": [ { "id": "F1SCT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCT1" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SCT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCT1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SCT1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCT1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100156664", "url": "https://www.uniprot.org/uniprotkb/F1SCT1", "locus": {} } ], "crossref": [ { "id": "F1SCT1", "url": "https://alphafold.ebi.ac.uk/entry/F1SCT1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15232", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15232", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CHSNVVQ", "url": "https://omabrowser.org/oma/group/CHSNVVQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR26452", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26452", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SCT1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCT1-1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VMNQTLVTEFLILGFSEPPGLQTLLFLAFLLLYTVALSGNLLIVAVISSSPALHTPMYFFLVNLALVDILCTSTILPKLLVGMVASRTISYGGCMAQLFFFTWSMGAELLLFSAMAYDRYVAICRPLHYSALMGPQVCQLLAGVVWTVSLTNTSVHTGLMLRLPFCHSNVVEHFFCEIPPLLKLSCAPTHLNETMAFTADLFLAVGNFSVIMLSYGCIISSILHIRSAAGKQRAFSTCSSHLLVVTMYYSTVIYTYIRPTSSYSLDKDKLVSVIYTSVAPSLNPLIYSLRNTEVKVALGRLLSYC", "length": 305, "header": "tr|F1SCT1-1|F1SCT1_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100156664 PE=3 SV=3 CANONICAL=F1SCT1-1" }, "isoforms": [ { "isoform_ac": "F1SCT1-1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1/entry#F1SCT1-1", "sequence": { "sequence": "VMNQTLVTEFLILGFSEPPGLQTLLFLAFLLLYTVALSGNLLIVAVISSSPALHTPMYFFLVNLALVDILCTSTILPKLLVGMVASRTISYGGCMAQLFFFTWSMGAELLLFSAMAYDRYVAICRPLHYSALMGPQVCQLLAGVVWTVSLTNTSVHTGLMLRLPFCHSNVVEHFFCEIPPLLKLSCAPTHLNETMAFTADLFLAVGNFSVIMLSYGCIISSILHIRSAAGKQRAFSTCSSHLLVVTMYYSTVIYTYIRPTSSYSLDKDKLVSVIYTSVAPSLNPLIYSLRNTEVKVALGRLLSYC", "length": 305, "header": "tr|F1SCT1-1|F1SCT1_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100156664 PE=3 SV=3 CANONICAL=F1SCT1-1" }, "locus": { "chromosome": "14", "start_pos": 141659657, "end_pos": 141658743, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011798.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011798.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011496.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011496.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 260, "start_aa": "Thr", "end_pos": 260, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr260", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCT1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q7TRT9-1", "protein_name": "Olfactory receptor family 12 subfamily J member 2", "gene_name": "Or12j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMNGTLVTEFLILGFSEMPHLRVPLLFSFLCLYMAAISGNLLIMVTISASPALHTPMYFFLVNLAIVDILCTSTILPKLLDSMMTGRTISYGGCMAQLFFFTWSLGAELLLFSAMAYDRFVAICCPLHYSAWMGPRVCAFLAGIVWTISLTNTSVHTGLMLRLPFCSSNVIEHFFCEIPPLLKLSCAPTQLNEAMAFAADVFLAVGNFSVTILSYGFIVASILKIRSAEGKRRAFSTCSAHLIVVTMYYSTVIYTYIRPSSSYSLNKDKVVSIIYTSVAPTLNPLIYTLRNKDVKVALRRLLSCC", "length": 305 }, "evidence": [ { "id": "F1SCT1", "url": "https://omabrowser.org/oma/group/F1SCT1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SCT1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SCT1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SCT1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCT1", "url": "https://www.uniprot.org/uniprotkb/F1SCT1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCT1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 305, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCT1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCT1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCT1" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 287, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 260 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 152, "end_pos": 154 }, { "start_pos": 192, "end_pos": 194 }, { "start_pos": 207, "end_pos": 209 }, { "start_pos": 3, "end_pos": 5 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCT2-1", "uniprot_ac": "F1SCT2", "uniprot_id": "F1SCT2_PIG", "mass": { "chemical_mass": 34278.0, "monoisotopic_mass": 34278.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100154185", "type": "recommended", "evidence": [ { "id": "F1SCT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCT2" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SCT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCT2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SCT2", "url": "https://www.uniprot.org/uniprotkb/F1SCT2#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCT2", "url": "https://www.uniprot.org/uniprotkb/F1SCT2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100154185", "url": "https://www.uniprot.org/uniprotkb/F1SCT2", "locus": {} } ], "crossref": [ { "id": "F1SCT2", "url": "https://alphafold.ebi.ac.uk/entry/F1SCT2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010782", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010782", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26452", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26452", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SCT2", "url": "https://www.uniprot.org/uniprotkb/F1SCT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCT2-1", "url": "https://www.uniprot.org/uniprotkb/F1SCT2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "QRWSNQTVVTEFVLQGFSEHPELWLPLLGCFSFLYTVALMGNAVIIAVVSYSASLRSPMYFFLCNLAIMDIICTSSVLPKVLAGLASEKNTISFPGCMAQLFFLLWSLSSELLLLTVMAYDRYEAICHPLHYGSKMSPLLCRSLALGVWVVCALNASVHTGLMMRLSFCGSNIVTHFFCEIPPLLLLSCSPTLMNSIMTVLADAFYGVINFVLTLASYCCIIASILRMRSASGRQRAFSTCSSHLLVVSVYYSAVFCAYISPASSYGPERSKVSGVLYTTLSPTLNPIIYSLRNTEVKHALKRLILLSRR", "length": 310, "header": "tr|F1SCT2-1|F1SCT2_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100154185 PE=3 SV=3 CANONICAL=F1SCT2-1" }, "isoforms": [ { "isoform_ac": "F1SCT2-1", "url": "https://www.uniprot.org/uniprotkb/F1SCT2/entry#F1SCT2-1", "sequence": { "sequence": "QRWSNQTVVTEFVLQGFSEHPELWLPLLGCFSFLYTVALMGNAVIIAVVSYSASLRSPMYFFLCNLAIMDIICTSSVLPKVLAGLASEKNTISFPGCMAQLFFLLWSLSSELLLLTVMAYDRYEAICHPLHYGSKMSPLLCRSLALGVWVVCALNASVHTGLMMRLSFCGSNIVTHFFCEIPPLLLLSCSPTLMNSIMTVLADAFYGVINFVLTLASYCCIIASILRMRSASGRQRAFSTCSSHLLVVSVYYSAVFCAYISPASSYGPERSKVSGVLYTTLSPTLNPIIYSLRNTEVKHALKRLILLSRR", "length": 310, "header": "tr|F1SCT2-1|F1SCT2_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100154185 PE=3 SV=3 CANONICAL=F1SCT2-1" }, "locus": { "chromosome": "14", "start_pos": 141680867, "end_pos": 141679836, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011797.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011797.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011495.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011495.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCT2", "url": "https://www.uniprot.org/uniprotkb/F1SCT2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SCT2", "url": "https://www.uniprot.org/uniprotkb/F1SCT2" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SCT2", "url": "https://www.uniprot.org/uniprotkb/F1SCT2" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SCT2", "url": "https://www.uniprot.org/uniprotkb/F1SCT2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCT2", "url": "https://www.uniprot.org/uniprotkb/F1SCT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCT2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 310, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCT2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCT2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCT2" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCT5-1", "uniprot_ac": "F1SCT5", "uniprot_id": "F1SCT5_PIG", "mass": { "chemical_mass": 37275.0, "monoisotopic_mass": 37275.0 }, "refseq": { "ac": "XP_020929631", "name": "synaptonemal complex central element protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929631" }, "gene_names": [ { "name": "SYCE1", "type": "recommended", "evidence": [ { "id": "F1SCT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCT5" } ] }, { "name": "SYCE1", "type": "synonym", "evidence": [ { "id": "XP_020929631", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929631" } ] } ], "protein_names": [ { "name": "Synaptonemal complex central element protein 1", "type": "recommended", "evidence": [ { "id": "F1SCT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCT5/entry#names_and_taxonomy" } ] }, { "name": "synaptonemal complex central element protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020929631", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929631" } ] } ], "function": [ { "annotation": "Major component of the transverse central element of synaptonemal complexes (SCS), formed between homologous chromosomes during meiotic prophase. Requires SYCP1 in order to be incorporated into the central element. May have a role in the synaptonemal complex assembly, stabilization and recombination.", "evidence": [ { "database": "UniProtKB", "id": "F1SCT5", "url": "https://www.uniprot.org/uniprotkb/F1SCT5#function" }, { "database": "UniProtKB", "id": "ARBA00045754", "url": "https://www.uniprot.org/uniprotkb/ARBA00045754#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCT5", "url": "https://www.uniprot.org/uniprotkb/F1SCT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYCE1", "url": "https://www.uniprot.org/uniprotkb/F1SCT5", "locus": { "chromosome": "14", "start_pos": 141726208, "end_pos": 141735919, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010779", "url": "https://www.ensembl.org/id/ENSSSCG00000010779" } ] } } ], "crossref": [ { "id": "F1SCT5", "url": "https://alphafold.ebi.ac.uk/entry/F1SCT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010779", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010779", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156954", "url": "https://www.ncbi.nlm.nih.gov/gene/100156954", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026676", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026676", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EFHKPEQ", "url": "https://omabrowser.org/oma/group/EFHKPEQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21731", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21731", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21731:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21731:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15233", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15233", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020929631", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929631", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SCT5", "url": "https://www.uniprot.org/uniprotkb/F1SCT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SCT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGRPGPSSEESAGALGRAGEAGGQAKSSQKIEDLMEMVKKLQKAGSLEPKVEVLINRINEVQQAKKKASEELGEARTVWETLQKELDSLSGEKVRLKEILSKKQETLRILRLHCQEKESEAQRKQTMLQECKERISALNSQIEEEKNKQRKLRLDFEEQLEDLMGQHKDLWEFHKPEQLALEIDALDSNKEQLLKEEKLVEAKLEDVKHRLCSQFGAKGCSTITEGLFLRSQEAAAVVHLFEEENRKAQELLGAAAQRQEQLQQKCQQLQQKKQRLKEELEKLGVQVPAQSQRKQEEGASPGEAANPKTLGVSEEKDPELPIKQGLMSS", "length": 330, "header": "tr|F1SCT5-1|F1SCT5_PIG Isoform 1 of Synaptonemal complex central element protein 1 OS=Sus scrofa OX=9823 GN=SYCE1 PE=3 SV=3 CANONICAL=F1SCT5-1" }, "isoforms": [ { "isoform_ac": "F1SCT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SCT5/entry#F1SCT5-1", "sequence": { "sequence": "MAGRPGPSSEESAGALGRAGEAGGQAKSSQKIEDLMEMVKKLQKAGSLEPKVEVLINRINEVQQAKKKASEELGEARTVWETLQKELDSLSGEKVRLKEILSKKQETLRILRLHCQEKESEAQRKQTMLQECKERISALNSQIEEEKNKQRKLRLDFEEQLEDLMGQHKDLWEFHKPEQLALEIDALDSNKEQLLKEEKLVEAKLEDVKHRLCSQFGAKGCSTITEGLFLRSQEAAAVVHLFEEENRKAQELLGAAAQRQEQLQQKCQQLQQKKQRLKEELEKLGVQVPAQSQRKQEEGASPGEAANPKTLGVSEEKDPELPIKQGLMSS", "length": 330, "header": "tr|F1SCT5-1|F1SCT5_PIG Isoform 1 of Synaptonemal complex central element protein 1 OS=Sus scrofa OX=9823 GN=SYCE1 PE=3 SV=3 CANONICAL=F1SCT5-1" }, "locus": { "chromosome": "14", "start_pos": 141735825, "end_pos": 141727212, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011794.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011794.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011492.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011492.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCT5", "url": "https://www.uniprot.org/uniprotkb/F1SCT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q5XHZ2-1", "protein_name": "Synaptonemal complex central element protein 1", "gene_name": "Syce1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATRPQPLSVEPEGSADLLHGPEGARGRRGSTQKIEDLMEMVEKLQKVGSLEPRIEVLINRINEVQQAKKKASEELGEAQTVWDTLQKEVDSLHEEKVRLKDILNRKEETLRIMQLHCQEKESEAERKHSMLQECKDRISFLNNQIDNEKAKLRRLRLDFEEHLETLMSQHKDTMEFHKPEHLTEEMSVLDSSKEQLLKEEKLIKAKLEDVQHRLCALCGPEGSSTFSDGLFLRSHEAAAAMQMFKDENKKAEELLEAAAQQHQQLQQRCRQLQQKRQRLKEELEKHGVQILAQIQSTQKEEDSSWRTASPKPLEAHKETVQERPSSRT", "length": 329 }, "evidence": [ { "id": "F1SCT5", "url": "https://omabrowser.org/oma/group/F1SCT5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N0S2-1", "protein_name": "Synaptonemal complex central element protein 1", "gene_name": "SYCE1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGRSLTSKAEPTAGAVDRAEKAGGQDTSSQKIEDLMEMVQKLQKVGSLEPRVEVLINRINEVQQAKKKANKDLGEARTICEALQKELDSLHGEKVHLKEILSKKQETLRILRLHCQEKESEAHRKHTMLQECKERISALNLQIEEEKNKQRQLRLAFEEQLEDLMGQHKDLWDFHMPERLAKEICALDSSKEQLLKEEKLVKATLEDVKHQLCSLCGAEGPSTLDEGLFLRSQEAAATVQLFQEEHRKAEELLAAAAQRHQQLQQKCQQQQQKRQRLKEELEKHGMQVPAQAQSTQEEEAGPGDVASPKPLKGERPGAAHQAGPDVLIGQEDTLHPDLSPRGFQEIKELF", "length": 351 }, "evidence": [ { "id": "F1SCT5", "url": "https://omabrowser.org/oma/group/F1SCT5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D495-1", "protein_name": "Synaptonemal complex central element protein 1", "gene_name": "Syce1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATRPQPLGMEPEGSADLLHGPEGARGQYGSTQKIEDLMDMVKKLQKVGSLEPRIEVLINRINEVQQAKKKASEELGEAQTVWDNLQKELDLLREEKVRLKDILNRKEETLRIMQLHCQEKESEAQRKHSMLQECKERISFLNSQIDKEKAKLRKLRLDFEEHLETLMSQHKDTLEFHKPEHLTKEMCVLDSSKEQLLKEEKLMKVKLEDVRQRLCALGGPEGSSSLIEGLFLRSHEAAAAMQMFKDENKKAEEFLEAAAQQHEQLQQRCHQLQQKRQRLKEELEKHGVQILAHSTQNEEDSSWRMASPKPVEVHEETAQDQERPSSRT", "length": 329 }, "evidence": [ { "id": "F1SCT5", "url": "https://omabrowser.org/oma/group/F1SCT5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1SCT5", "url": "https://www.uniprot.org/uniprotkb/F1SCT5" } ], "pmid": "" }, { "name": "synaptonemal complex assembly", "id": "GO:0007130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007130", "evidence": [ { "database": "UniProtKB", "id": "F1SCT5", "url": "https://www.uniprot.org/uniprotkb/F1SCT5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "synaptonemal complex", "id": "GO:0000795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000795", "evidence": [ { "database": "UniProtKB", "id": "F1SCT5", "url": "https://www.uniprot.org/uniprotkb/F1SCT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCT5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 330, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCT5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCT5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCV4-1", "uniprot_ac": "F1SCV4", "uniprot_id": "F1SCV4_PIG", "mass": { "chemical_mass": 91900.0, "monoisotopic_mass": 91900.0 }, "refseq": {}, "gene_names": [ { "name": "KNDC1", "type": "recommended", "evidence": [ { "id": "F1SCV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCV4" } ] } ], "protein_names": [ { "name": "Kinase non-catalytic C-lobe domain containing 1", "type": "synonym", "evidence": [ { "id": "F1SCV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCV4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCV4", "url": "https://www.uniprot.org/uniprotkb/F1SCV4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KNDC1", "url": "https://www.uniprot.org/uniprotkb/F1SCV4", "locus": {} } ], "crossref": [ { "id": "F1SCV4", "url": "https://alphafold.ebi.ac.uk/entry/F1SCV4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010770", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010770", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06224", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06224", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21560", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21560", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21560:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21560:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00617", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00618", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00618", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SCV4", "url": "https://www.uniprot.org/uniprotkb/F1SCV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCV4-1", "url": "https://www.uniprot.org/uniprotkb/F1SCV4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEYIYALKDLTYATFCGAISEKFCDLYWGEKLLQSLFRVVNGRTAPPENTSEEAGSQPDGDDGPSALHSGSPSSRRPSPLGTGKEKPDADSDERSRGNFEVAFRPQKSVKAGREPRPEAGGDLASGSEAVAQPARPAEGSPRVNPGPAAFQSCCPGWCSAFYEADCFGPDVHNYVQELARRKATGSPDAQNPACLLEPECRQELEQQLMIEKRNFRKTLKFYQKLLQKEKRHRGSEVKTMLSKLKGQLEEMRSKVQLLGLVKKYLQVLYAESWGLEPCALPVIVNIAAAPCDALGFSPLDESSSLIFYDVSKQPRGSRQRRARVLQAGTPLGLMAYLYSSDAFLEGYVQQFLYTFRYFCTPHDFLHFLLDRISSTLSRAHQDPASTFTKIYRRSLCLLQAWLEDCYTVDFTRNTGLLGRLQDYLSSQVLPLDSSAEHLLSLLEVGTERRAEGTPRSADLEDPKEAEDTRPLAALCKRLSEDGGSRKAFPWRPSRGNGLALPHHKERPYTIASALPKPCFFEDVYGPYAKASEKGPYFLTEYSTHQLFSQLTLLQQELFQKCHPVHFLNSRALGVTDKSVAVQASSSESLSAKTCSLFPPNYVQDKYLLQLLRSADDVSTWVAAEIVTSHTSKLQVNLLSKFLLIAKSCYEQRNFATAMQILGGLEHPAVRQSPAWKILPAKIAEVMEELKAVEVFLKSDSLCLMEGRRSRTQPTLPSAHLLAMHLQQLETGGFTMTNGAHRWSKLRNIAKVVSQVHAFQENPYTFAPDPKLQSHLKQRIARFSGANISILAADSRASPRQVASEKHPRKIQDKLRRMKATFQ", "length": 823, "header": "tr|F1SCV4-1|F1SCV4_PIG Isoform 1 of Kinase non-catalytic C-lobe domain containing 1 OS=Sus scrofa OX=9823 GN=KNDC1 PE=4 SV=5 CANONICAL=F1SCV4-1" }, "isoforms": [ { "isoform_ac": "F1SCV4-1", "url": "https://www.uniprot.org/uniprotkb/F1SCV4/entry#F1SCV4-1", "sequence": { "sequence": "MGEYIYALKDLTYATFCGAISEKFCDLYWGEKLLQSLFRVVNGRTAPPENTSEEAGSQPDGDDGPSALHSGSPSSRRPSPLGTGKEKPDADSDERSRGNFEVAFRPQKSVKAGREPRPEAGGDLASGSEAVAQPARPAEGSPRVNPGPAAFQSCCPGWCSAFYEADCFGPDVHNYVQELARRKATGSPDAQNPACLLEPECRQELEQQLMIEKRNFRKTLKFYQKLLQKEKRHRGSEVKTMLSKLKGQLEEMRSKVQLLGLVKKYLQVLYAESWGLEPCALPVIVNIAAAPCDALGFSPLDESSSLIFYDVSKQPRGSRQRRARVLQAGTPLGLMAYLYSSDAFLEGYVQQFLYTFRYFCTPHDFLHFLLDRISSTLSRAHQDPASTFTKIYRRSLCLLQAWLEDCYTVDFTRNTGLLGRLQDYLSSQVLPLDSSAEHLLSLLEVGTERRAEGTPRSADLEDPKEAEDTRPLAALCKRLSEDGGSRKAFPWRPSRGNGLALPHHKERPYTIASALPKPCFFEDVYGPYAKASEKGPYFLTEYSTHQLFSQLTLLQQELFQKCHPVHFLNSRALGVTDKSVAVQASSSESLSAKTCSLFPPNYVQDKYLLQLLRSADDVSTWVAAEIVTSHTSKLQVNLLSKFLLIAKSCYEQRNFATAMQILGGLEHPAVRQSPAWKILPAKIAEVMEELKAVEVFLKSDSLCLMEGRRSRTQPTLPSAHLLAMHLQQLETGGFTMTNGAHRWSKLRNIAKVVSQVHAFQENPYTFAPDPKLQSHLKQRIARFSGANISILAADSRASPRQVASEKHPRKIQDKLRRMKATFQ", "length": 823, "header": "tr|F1SCV4-1|F1SCV4_PIG Isoform 1 of Kinase non-catalytic C-lobe domain containing 1 OS=Sus scrofa OX=9823 GN=KNDC1 PE=4 SV=5 CANONICAL=F1SCV4-1" }, "locus": { "chromosome": "14", "start_pos": 141186507, "end_pos": 141165340, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011784.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011784.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011482.5", "url": "https://www.ensembl.org/id/ENSSSCP00000011482.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCV4", "url": "https://www.uniprot.org/uniprotkb/F1SCV4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1SCV4", "url": "https://www.uniprot.org/uniprotkb/F1SCV4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "F1SCV4", "url": "https://www.uniprot.org/uniprotkb/F1SCV4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 787, "end_pos": 789, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCV4" }, { "id": "PS50212", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50212" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-terminal Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 322, "end_pos": 450, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SCV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCV4" }, { "id": "PS50009", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50009" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 543, "end_pos": 800, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 50, "end_pos": 52 }, { "start_pos": 787, "end_pos": 789 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCW7-1", "uniprot_ac": "F1SCW7", "uniprot_id": "F1SCW7_PIG", "mass": { "chemical_mass": 53160.0, "monoisotopic_mass": 53160.0 }, "refseq": { "ac": "XP_020943442", "name": "major facilitator superfamily domain-containing protein 2B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943442" }, "gene_names": [ { "name": "MFSD2B", "type": "recommended", "evidence": [ { "id": "F1SCW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCW7" } ] }, { "name": "MFSD2B", "type": "synonym", "evidence": [ { "id": "XP_020943442", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943442" } ] } ], "protein_names": [ { "name": "Sphingosine-1-phosphate transporter MFSD2B", "type": "recommended", "evidence": [ { "id": "F1SCW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCW7/entry#names_and_taxonomy" } ] }, { "name": "Major facilitator superfamily domain-containing protein 2B", "type": "synonym", "evidence": [ { "id": "F1SCW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCW7/entry#names_and_taxonomy" } ] }, { "name": "major facilitator superfamily domain-containing protein 2B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020943442", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943442" } ] } ], "function": [ { "annotation": "Lipid transporter that specifically mediates export of sphingosine-1-phosphate in red blood cells and platelets. Sphingosine-1-phosphate is a signaling sphingolipid and its export from red blood cells into in the plasma is required for red blood cell morphology. Sphingosine-1-phosphate export from platelets is required for platelet aggregation and thrombus formation. Mediates the export of different sphingosine-1-phosphate (S1P) species, including S1P(d18:0) (sphinganine 1-phosphate), S1P (d18:1) (sphing-4-enine 1-phosphate) and S1P (d18:2) (sphinga-4E,14Z-dienine-1-phosphate). Release of sphingosine-1-phosphate is facilitated by a proton gradient. In contrast, cations, such as sodium, are not required to drive sphingosine-1-phosphate transport. In addition to export, also able to mediate S1P import. Does not transport lysophosphatidylcholine (LPC).", "evidence": [ { "database": "UniProtKB", "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7#function" }, { "database": "UniProtKB", "id": "ARBA00054387", "url": "https://www.uniprot.org/uniprotkb/ARBA00054387#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MFSD2B", "url": "https://www.uniprot.org/uniprotkb/F1SCW7", "locus": { "chromosome": "3", "start_pos": 114659872, "end_pos": 114672018, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008590", "url": "https://www.ensembl.org/id/ENSSSCG00000008590" } ] } } ], "crossref": [ { "id": "F1SCW7", "url": "https://alphafold.ebi.ac.uk/entry/F1SCW7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008590", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008590", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522434", "url": "https://www.ncbi.nlm.nih.gov/gene/100522434", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039672", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039672", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522434", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522434", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LPMAEWF", "url": "https://omabrowser.org/oma/group/LPMAEWF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCW7", "url": "https://www.orthodb.org/?gene=F1SCW7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11328", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11328", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11328:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11328:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13347", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13347", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660661", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943442", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943442", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "38667", "url": "https://www.rhea-db.org/rhea/38667", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "38671", "url": "https://www.rhea-db.org/rhea/38671", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "70207", "url": "https://www.rhea-db.org/rhea/70207", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SCW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGPHEGTPARAAETPPPPPVAHTLEPDAGSNAGHLSFFTKVCYGIGGVPNQVASSAIAFYLQLFLLDVAQIPAAQVSLVLFGGKVSGAAADPLAGFLINRSRRTGSGRLMPWVLGCTPFIALAYFFLWFLPPFTSLRGLWYTTLYCLFQALATFFQVPYTALTMLLTPSPRERDSATAYRMTMEMAGTLMGAAVHGLIVSGAHGSHRCDEATLPGQVAVFPNAIRLYPIAAAVVAVTYPVCSSLLCLGVKERPDPSAPASGQGLSFLAGLGLTVRHPPYLKLVISFLFISAAVQVEQSYLVLFCTHASRLHDHVQSLVLTILVSAVLSTPMWEWVLQRFGKRMSAFGICGMVPFAILLAAVPTAPVAYVVAFVSGISIAVSLLLPWSMLPDVVDDFQLQHQHGPGLETIFYSSYVFFTKLSGAGALGISTLSLDFAGYESGACKQAEQVVVTLKVLIGAVPTCMILTGLCILMVGPAPKAPTQDSSRSLRRRTSYSLA", "length": 499, "header": "tr|F1SCW7-1|F1SCW7_PIG Isoform 1 of Sphingosine-1-phosphate transporter MFSD2B OS=Sus scrofa OX=9823 GN=MFSD2B PE=3 SV=2 CANONICAL=F1SCW7-1" }, "isoforms": [ { "isoform_ac": "F1SCW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SCW7/entry#F1SCW7-1", "sequence": { "sequence": "MAGPHEGTPARAAETPPPPPVAHTLEPDAGSNAGHLSFFTKVCYGIGGVPNQVASSAIAFYLQLFLLDVAQIPAAQVSLVLFGGKVSGAAADPLAGFLINRSRRTGSGRLMPWVLGCTPFIALAYFFLWFLPPFTSLRGLWYTTLYCLFQALATFFQVPYTALTMLLTPSPRERDSATAYRMTMEMAGTLMGAAVHGLIVSGAHGSHRCDEATLPGQVAVFPNAIRLYPIAAAVVAVTYPVCSSLLCLGVKERPDPSAPASGQGLSFLAGLGLTVRHPPYLKLVISFLFISAAVQVEQSYLVLFCTHASRLHDHVQSLVLTILVSAVLSTPMWEWVLQRFGKRMSAFGICGMVPFAILLAAVPTAPVAYVVAFVSGISIAVSLLLPWSMLPDVVDDFQLQHQHGPGLETIFYSSYVFFTKLSGAGALGISTLSLDFAGYESGACKQAEQVVVTLKVLIGAVPTCMILTGLCILMVGPAPKAPTQDSSRSLRRRTSYSLA", "length": 499, "header": "tr|F1SCW7-1|F1SCW7_PIG Isoform 1 of Sphingosine-1-phosphate transporter MFSD2B OS=Sus scrofa OX=9823 GN=MFSD2B PE=3 SV=2 CANONICAL=F1SCW7-1" }, "locus": { "chromosome": "3", "start_pos": 114671941, "end_pos": 114660911, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009400.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009400.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009160.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009160.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522434", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522434", "resource": "KEGG Pathway" }, { "id": "R-SSC-1660661", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "resource": "Reactome", "description": "Sphingolipid de novo biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4J720-1", "protein_name": "Major facilitator superfamily domain-containing protein 2B", "gene_name": "mfsd2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNTAVTSSVKPESLSAVSVPAAMAKGEKARVTSGDKLMMKHPEPAFTKVPPQTLLDQKLSVCSKLCFAIGGAPNQVAGSATAFFLQIYLLDIAQINPFQASMVLFVGKAWGAVTDPIVGFFITKSKWTKIGRLMPWMVGCTPFMVVSYFYLWFVPPFTNGRFMWYLGFYCLYQTLITCFHVPYSALTMFLSTDQRERDSATAYRMTVEVLGTLVGAAIQGQIVASAHTLKHCPHRNLTAAHLTNSSGTEIIRSLALSQDFLSHAKEVYMIAAGVIGGLFLVCTVVMFLGVKERDDPYAPKTDKAIPFHKGFILVMKHGSYLTLTASFLFISVAIQLIQSNFVLFCTYAVELRDHFQNIVLTILMSAAVSIPFWQWFLEKFGKKTAAFCGITWIMPFTVMLVFIPNLIVAYVVAVSSGLSVAASLLLPWSMLPDVVDDFRLANRNSKGHEAIFYSLYAFFTKFAAGISLGVSTLCLQFAGYDTGACRQPLPVVYTLKLLIGAAPVACITTGLMILVVYPISEDVRLRNKVALEELRKQSITCKTLRADLSSV", "length": 551 }, "evidence": [ { "id": "F1SCW7", "url": "https://omabrowser.org/oma/group/F1SCW7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NFX1-1", "protein_name": "Sphingosine-1-phosphate transporter MFSD2B", "gene_name": "MFSD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPPAPAAKGSPQPEPHAPEPGPGSAKRGREDSRAGRLSFCTKVCYGIGGVPNQIASSATAFYLQLFLLDIAQIPAAQVSLVLFGGKVSGAAADPVAGFFINRSQRTGSGRLMPWVLGCTPFIALAYFFLWFLPPFTSLRGLWYTTFYCLFQALATFFQVPYTALTMLLTPCPRERDSATAYRMTVEMAGTLMGATVHGLIVSGAHRPHRCEATATPGPVTVSPNAAHLYCIAAAVVVVTYPVCISLLCLGVKERPDPSAPASGPGLSFLAGLSLTTRHPPYLKLVISFLFISAAVQVEQSYLVLFCTHASQLHDHVQGLVLTVLVSAVLSTPLWEWVLQRFGKKTSAFGIFAMVPFAILLAAVPTAPVAYVVAFVSGVSIAVSLLLPWSMLPDVVDDFQLQHRHGPGLETIFYSSYVFFTKLSGACALGISTLSLEFSGYKAGVCKQAEEVVVTLKVLIGAVPTCMILAGLCILMVGSTPKTPSRDASSRLSLRRRTSYSLA", "length": 504 }, "evidence": [ { "id": "F1SCW7", "url": "https://omabrowser.org/oma/group/F1SCW7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D4A482-1", "protein_name": "Sphingosine-1-phosphate transporter MFSD2B", "gene_name": "Mfsd2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVPHGPTRAPVAEPHTQEPGSDKRDGRLSVCTKVCYGIGGIPNQVASSASAFYLQLFLLDVAQIPAAQVSLALFGGKVSGAVADPVAGFFINKSRRTGSGRLMPWVLGCMPLIALAYFFLWFLPPFTSLRGLWYTSFYCLFQALATFFQVPYTALTMILTPSPRERDSATAYRITMEMAGTLMGATVHGLIVSSAHGSHRCEGTVHPTSTAVSPDVARLYCIAAAVVALTYPVCGSLLCLGVKEQPDPSAPASGQGLSFFTGLGITSRHPPYLNLVVSFLFISAAVQVEQSYFVLFCTHASKLQDHVQNLVLTILVSAVLSTPLWEWVLQRFGKRTSALGICVMVPFSILLAAVPSAPVAYAVAFVSGVSIAVSLLLPWSMLPDVVDDFQLQHRHGPGVETIFYSSYVFFTKLSGAGALGISTLSLGFAGYEAGACQQAEEVVVTLKVLIGAVPTCMILIGLCILLVGPTPKTPSQDTSSQLSLRRRTSYSLA", "length": 494 }, "evidence": [ { "id": "F1SCW7", "url": "https://omabrowser.org/oma/group/F1SCW7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3T9M1-1", "protein_name": "Sphingosine-1-phosphate transporter MFSD2B", "gene_name": "Mfsd2b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVPHGPTPAPVAEPHTQEPGSDKRDGRLSVCTKVCYGIGGVPNQVASSASAFYLQLFLLDVAQIPAAQVSLALFGGKVSGAVADPVAGFFINKSRRTGSGRLMPWALGCMPLIALAYFFLWFLPPFTSLRGLWYTSFYCLFQALATFFQVPYTALTMILTPSPRERDSATAYRMTMEMAGTLMGATVHGLIVSSAHGSQRCEDTVHPRSPAVSPDVARLYCIAAAVVALTYPVCGSLLCLGVKEQPDTSAPASGQGLNFFTGLAITSQHPPYLSLVVSFLFISAAVQVEQSYLVLFCTHASKLQDHVQNLVLIILVSAVLSTPLWEWVLQRFGKKTSAFGICVMVPFSILLAAVPSAPVAYVVAFVSGVSIAVSLLLPWSMLPDVVDDFQLQHRCGPGVETIFYSSYVFFTKLSGAGALGISTLSLEFAGCEAGACQQAEEVVVTLKVLIGAVPTCMILIGLCILLVGPTPKMPRQDTSSQLSLRRRTSYSLA", "length": 494 }, "evidence": [ { "id": "F1SCW7", "url": "https://omabrowser.org/oma/group/F1SCW7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7" } ], "pmid": "" }, { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7" } ], "pmid": "" }, { "name": "carbohydrate transport", "id": "GO:0008643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008643", "evidence": [ { "database": "UniProtKB", "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "symporter activity", "id": "GO:0015293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015293", "evidence": [ { "database": "UniProtKB", "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7" } ], "pmid": "" }, { "name": "sphingolipid transporter activity", "id": "GO:0046624", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046624", "evidence": [ { "database": "UniProtKB", "id": "F1SCW7", "url": "https://www.uniprot.org/uniprotkb/F1SCW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "38667", "name": "", "equation": "sphing-4-enine 1-phosphate(in) = sphing-4-enine 1-phosphate(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "38667", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/38667" } ] }, { "id": "38671", "name": "", "equation": "sphinganine 1-phosphate(in) = sphinganine 1-phosphate(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "38671", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/38671" } ] }, { "id": "70207", "name": "", "equation": "sphinga-4E,14Z-dienine-1-phosphate(in) = sphinga-4E,14Z-dienine-1-phosphate(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70207", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70207" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCW7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 499, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCW7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCW7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCX9-1", "uniprot_ac": "F1SCX9", "uniprot_id": "F1SCX9_PIG", "mass": { "chemical_mass": 53015.0, "monoisotopic_mass": 53015.0 }, "refseq": { "ac": "XP_013838989", "name": "monocarboxylate transporter 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013838989" }, "gene_names": [ { "name": "SLC16A12", "type": "recommended", "evidence": [ { "id": "F1SCX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" } ] }, { "name": "SLC16A12", "type": "synonym", "evidence": [ { "id": "XP_013838989", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013838989" } ] } ], "protein_names": [ { "name": "Monocarboxylate transporter 12", "type": "recommended", "evidence": [ { "id": "F1SCX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCX9/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 16 member 12", "type": "synonym", "evidence": [ { "id": "F1SCX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCX9/entry#names_and_taxonomy" } ] }, { "name": "monocarboxylate transporter 12", "type": "synonym", "evidence": [ { "id": "XP_013838989", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013838989" } ] } ], "function": [ { "annotation": "Functions as a transporter for creatine and as well for its precursor guanidinoacetate. Transport of creatine and GAA is independent of resting membrane potential and extracellular Na(+), Cl(-), or pH. Contributes to the process of creatine biosynthesis and distribution.", "evidence": [ { "database": "UniProtKB", "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9#function" }, { "database": "UniProtKB", "id": "ARBA00037605", "url": "https://www.uniprot.org/uniprotkb/ARBA00037605#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC16A12", "url": "https://www.uniprot.org/uniprotkb/F1SCX9", "locus": { "chromosome": "14", "start_pos": 101273996, "end_pos": 101368132, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010455", "url": "https://www.ensembl.org/id/ENSSSCG00000010455" } ] } } ], "crossref": [ { "id": "F1SCX9", "url": "https://alphafold.ebi.ac.uk/entry/F1SCX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010455", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010455", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17424", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17424", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157079", "url": "https://www.ncbi.nlm.nih.gov/gene/100157079", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157079", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157079", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GSWMALT", "url": "https://omabrowser.org/oma/group/GSWMALT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCX9", "url": "https://www.orthodb.org/?gene=F1SCX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11360:SF318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11360:SF318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013838989", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013838989", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "73043", "url": "https://www.rhea-db.org/rhea/73043", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "73047", "url": "https://www.rhea-db.org/rhea/73047", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SCX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKVNRARSTSPPDGGWGWMIVAGCFLVTICTRAVTRCISIFFVEFQTYFSQDYAQTAWIHSIVDCVTMLCAPLGSVVSNHLSCQVGIMLGGLLASTGLILGSFATSLKHLYLTLGVLTGLGFALCYSPAIAMVGKYFNRRKALAYGISMSGSGIGIFILAPVVQLLIEQFSWRGALLILGGFVLNLCVCGALMRPITLKEDRSTPEQNHVCRTQTQDLKQGSPCSTWTKKWVHTCLCGSLQQEYSFLLMSDFVVLAISVLFMAYGCSPLFVYLVPYALSVGVSHQQAAFLMSILGVIDIIGNITFGWLTDRRCLKNYQYVCYLFAVGLDGLCYLCLPMLQSLPLLVPFACTFGYFDGAYVTLIPVVTAEIVGTTSLSSALGVVYFLHAVPYLVSPPIAGWLVDTTGSYTAAFLLCGFSMIFSSVLLAFARLMKKMKKTQLRFLAKESDPKLQLWTNGSVAYSVTRELDQRDGESVAIAMLGSNLT", "length": 486, "header": "tr|F1SCX9-1|F1SCX9_PIG Isoform 1 of Monocarboxylate transporter 12 OS=Sus scrofa OX=9823 GN=SLC16A12 PE=3 SV=1 CANONICAL=F1SCX9-1" }, "isoforms": [ { "isoform_ac": "F1SCX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SCX9/entry#F1SCX9-1", "sequence": { "sequence": "MAKVNRARSTSPPDGGWGWMIVAGCFLVTICTRAVTRCISIFFVEFQTYFSQDYAQTAWIHSIVDCVTMLCAPLGSVVSNHLSCQVGIMLGGLLASTGLILGSFATSLKHLYLTLGVLTGLGFALCYSPAIAMVGKYFNRRKALAYGISMSGSGIGIFILAPVVQLLIEQFSWRGALLILGGFVLNLCVCGALMRPITLKEDRSTPEQNHVCRTQTQDLKQGSPCSTWTKKWVHTCLCGSLQQEYSFLLMSDFVVLAISVLFMAYGCSPLFVYLVPYALSVGVSHQQAAFLMSILGVIDIIGNITFGWLTDRRCLKNYQYVCYLFAVGLDGLCYLCLPMLQSLPLLVPFACTFGYFDGAYVTLIPVVTAEIVGTTSLSSALGVVYFLHAVPYLVSPPIAGWLVDTTGSYTAAFLLCGFSMIFSSVLLAFARLMKKMKKTQLRFLAKESDPKLQLWTNGSVAYSVTRELDQRDGESVAIAMLGSNLT", "length": 486, "header": "tr|F1SCX9-1|F1SCX9_PIG Isoform 1 of Monocarboxylate transporter 12 OS=Sus scrofa OX=9823 GN=SLC16A12 PE=3 SV=1 CANONICAL=F1SCX9-1" }, "locus": { "chromosome": "14", "start_pos": 101299326, "end_pos": 101276957, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025353.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025353.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021629.2", "url": "https://www.ensembl.org/id/ENSSSCP00000021629.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157079", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157079", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BJJ0-1", "protein_name": "Monocarboxylate transporter 12", "gene_name": "SLC16A12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKVKRARSTSPPDGGWGWMIVAGCFLVTICTRAVTRCISIFFVEFQTYFSQDYAQTAWIHSIVDCVTMLCAPLGSVVSNHFSCQVGIMLGGLLASTGLILGSFATSLKHLYLTLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGISLSGSGIGIFILAPVVQLLIEQFSWRGALLILGGFVLNLCVCGALMRPITLKEDQTTPEQNHVCRTQTQDFKQASPCSTWTKEWVQTCLCGSLQQEYSFLLMSDFVVLAVSVLFMAYGCSPLFVYFVPYALSVGVTHQQAAFLMSILGVIDIIGNITFGWLTDRRCLKNYQYVCYLFAIGLDGLCYLCLPMLQSLPLLVPFACTFGYFDGAYVTLIPVVTAEIVGTTSLSSALGVVYFLHAVPYLVSPPIAGWLVDTTGSYTAAFLLCGFSMIFSSLLLGFARVVKKMKRTQLRFLAKESDPKLQLWTNGSVAYSVARELDQRDGESVALAMLGSSPT", "length": 486 }, "evidence": [ { "id": "F1SCX9", "url": "https://omabrowser.org/oma/group/F1SCX9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" } ], "pmid": "" }, { "name": "creatine transmembrane transporter activity", "id": "GO:0005308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005308", "evidence": [ { "database": "UniProtKB", "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" } ], "pmid": "" }, { "name": "uniporter activity", "id": "GO:0015292", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015292", "evidence": [ { "database": "UniProtKB", "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "creatine transmembrane transport", "id": "GO:0015881", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015881", "evidence": [ { "database": "UniProtKB", "id": "F1SCX9", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "73043", "name": "", "equation": "creatine(in) = creatine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "73043", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/73043" } ] }, { "id": "73047", "name": "", "equation": "guanidinoacetate(in) = guanidinoacetate(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "73047", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/73047" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SCX9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 486, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SCX9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SCX9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SCX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCX9" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 435, "start_aa": "Trp", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 303, "end_pos": 305 }, { "start_pos": 457, "end_pos": 459 }, { "start_pos": 484, "end_pos": 486 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SCY2-1", "uniprot_ac": "F1SCY2", "uniprot_id": "F1SCY2_PIG", "mass": { "chemical_mass": 57856.0, "monoisotopic_mass": 57856.0 }, "refseq": { "ac": "NP_001191324", "name": "interferon-induced protein with tetratricopeptide repeats 3 isoform 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191324" }, "gene_names": [ { "name": "IFIT3", "type": "recommended", "evidence": [ { "id": "F1SCY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ] }, { "name": "IFIT3", "type": "synonym", "evidence": [ { "id": "NP_001191324", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191324" } ] } ], "protein_names": [ { "name": "Interferon induced protein with tetratricopeptide repeats 3", "type": "synonym", "evidence": [ { "id": "F1SCY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SCY2/entry#names_and_taxonomy" } ] }, { "name": "interferon-induced protein with tetratricopeptide repeats 3 isoform 1", "type": "synonym", "evidence": [ { "id": "NP_001191324", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191324" } ] }, { "name": "interferon-stimulated protein 60", "type": "synonym", "evidence": [ { "id": "NP_001191324", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191324" } ] } ], "function": [ { "annotation": "Authors showed that IFITM3 functions as potent broad-spectrum antiviral effector in two mammals - pigs and bats.", "evidence": [ { "database": "RefSeq", "id": "NP_001191324", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191324" }, { "database": "PubMed", "id": "25614588", "url": "https://glygen.org/publication/PubMed/25614588" } ] }, { "annotation": "PoIFIT3 plays a significant role in the clearance of swine influenza virus in pigs and potentiates IFN-beta production.", "evidence": [ { "database": "RefSeq", "id": "NP_001191324", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191324" }, { "database": "PubMed", "id": "25451299", "url": "https://glygen.org/publication/PubMed/25451299" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IFIT3", "url": "https://www.uniprot.org/uniprotkb/F1SCY2", "locus": { "chromosome": "14", "start_pos": 101225164, "end_pos": 101214710, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000061268", "url": "https://www.ensembl.org/id/ENSSSCG00000061268" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010452", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010452", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154248", "url": "https://www.ncbi.nlm.nih.gov/gene/100154248", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154248", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154248", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YLCHQIG", "url": "https://omabrowser.org/oma/group/YLCHQIG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SCY2", "url": "https://www.orthodb.org/?gene=F1SCY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10271:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10271:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001191324", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191324", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SCY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKHLNGQNEAALEYLQQAEEFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAIAMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNEEAEGEELVVEALEKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGESEASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIGECHQTAFSKELPSTEAQQLHQRSCNSQEYHEKSEDTAAQQSLENLSINTKSTEKEKMKYQLQNGAANQLPQSAPNSWYLRGLIHKMNGDLLQAAACYEKELGYLLRNSPSGIGSIFQPASELEEGTEEMDQGADGSTLRELPDPGADRDRKERKGTESQGAWNSG", "length": 509, "header": "tr|F1SCY2-1|F1SCY2_PIG Isoform 1 of Interferon induced protein with tetratricopeptide repeats 3 OS=Sus scrofa OX=9823 GN=IFIT3 PE=1 SV=3 CANONICAL=F1SCY2-1" }, "isoforms": [ { "isoform_ac": "F1SCY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SCY2/entry#F1SCY2-1", "sequence": { "sequence": "MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKHLNGQNEAALEYLQQAEEFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAIAMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNEEAEGEELVVEALEKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGESEASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIGECHQTAFSKELPSTEAQQLHQRSCNSQEYHEKSEDTAAQQSLENLSINTKSTEKEKMKYQLQNGAANQLPQSAPNSWYLRGLIHKMNGDLLQAAACYEKELGYLLRNSPSGIGSIFQPASELEEGTEEMDQGADGSTLRELPDPGADRDRKERKGTESQGAWNSG", "length": 509, "header": "tr|F1SCY2-1|F1SCY2_PIG Isoform 1 of Interferon induced protein with tetratricopeptide repeats 3 OS=Sus scrofa OX=9823 GN=IFIT3 PE=1 SV=3 CANONICAL=F1SCY2-1" }, "locus": { "chromosome": "14", "start_pos": 101224694, "end_pos": 101214885, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035268.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035268.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029001.2", "url": "https://www.ensembl.org/id/ENSSSCP00000029001.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Porcine interferon-induced protein with tetratricopeptide repeats 3, poIFIT3, inhibits swine influenza virus replication and potentiates IFN-\u03b2 production.", "journal": "Developmental and comparative immunology", "date": "2015-05", "authors": "Li Yongtao, Wen Zhibin, Zhou Hongbo, Wu Shujuan, Jia Guangmin, Qian Wei, Jin Meilin", "evidence": [ { "database": "RefSeq", "id": "NP_001191324", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191324" } ], "reference": [ { "type": "PubMed", "id": "25451299", "url": "https://glygen.org/publication/PubMed/25451299" } ] }, { "title": "Bat and pig IFN-induced transmembrane protein 3 restrict cell entry by influenza virus and lyssaviruses.", "journal": "The Journal of general virology", "date": "2015-05", "authors": "Benfield Camilla T O, Smith Sarah E, Wright Edward, Wash Rachael S, Ferrara Francesca, Temperton Nigel J, Kellam Paul", "evidence": [ { "database": "RefSeq", "id": "NP_001191324", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191324" } ], "reference": [ { "type": "PubMed", "id": "25614588", "url": "https://glygen.org/publication/PubMed/25614588" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154248", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154248", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E9PV48-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 3B", "gene_name": "Ifit3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSEVNRESLEAILPQLKCHFTWNLFREGSMSSHMEDRVCNQLEHLNSEEKATMYDLLAYIKHLDGESKAALECLGQAEDLRKSEHKDQAEIRRLVTWGNYAWIYYHMGRLSEAQAYVDKVRQVCQKFANPYSMECPELECEEGWTRLKCGRNERAKMCFEKALEEKPKDPECSSGMAIAMFRLEEKPEKQFSVDALKQAMELNPQNQYVKVLLALKLLRMGEEAEGERLIKDALGKAPNQTDVLQKAAQFYKKKGNLDRAIELLGKALRSTVNNSPLYSLVMCRYREILEQLQNKGDADSSERRQRMAELRRLTMEFMQKTLQRRRSPLNSYSDLIDFPEVERCYQMVISKESPDVEEEDLYERYCNLQEYHRKSEDLAALECLLQFPRNERSIEKEEVKQQT", "length": 403 }, "evidence": [ { "id": "F1SCY2", "url": "https://omabrowser.org/oma/group/F1SCY2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O14879-1", "protein_name": "Interferon-induced protein with tetratricopeptide repeats 3", "gene_name": "IFIT3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSEVTKNSLEKILPQLKCHFTWNLFKEDSVSRDLEDRVCNQIEFLNTEFKATMYNLLAYIKHLDGNNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAWVYYHLGRLSDAQIYVDKVKQTCKKFSNPYSIEYSELDCEEGWTQLKCGRNERAKVCFEKALEEKPNNPEFSSGLAIAMYHLDNHPEKQFSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSPCQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYKAKVRQMQNTGESEASGNKEMIEALKQYAMDYSNKALEKGLNPLNAYSDLAEFLETECYQTPFNKEVPDAEKQQSHQRYCNLQKYNGKSEDTAVQHGLEGLSISKKSTDKEEIKDQPQNVSENLLPQNAPNYWYLQGLIHKQNGDLLQAAKCYEKELGRLLRDAPSGIGSIFLSASELEDGSEEMGQGAVSSSPRELLSNSEQLN", "length": 490 }, "evidence": [ { "id": "F1SCY2", "url": "https://omabrowser.org/oma/group/F1SCY2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of cell population proliferation", "id": "GO:0008285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008285", "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "pmid": "" }, { "name": "negative regulation of apoptotic process", "id": "GO:0043066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043066", "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "pmid": "" }, { "name": "cellular response to cytokine stimulus", "id": "GO:0071345", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071345", "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "pmid": "" }, { "name": "antiviral innate immune response", "id": "GO:0140374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140374", "evidence": [ { "database": "UniProtKB", "id": "F1SCY2", "url": "https://www.uniprot.org/uniprotkb/F1SCY2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 388, "end_pos": 390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 388, "end_pos": 390 }, { "start_pos": 40, "end_pos": 42 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SD37-1", "uniprot_ac": "F1SD37", "uniprot_id": "F1SD37_PIG", "mass": { "chemical_mass": 17541.0, "monoisotopic_mass": 17541.0 }, "refseq": { "ac": "XP_005673024", "name": "protein SYS1 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673024" }, "gene_names": [ { "name": "SYS1", "type": "recommended", "evidence": [ { "id": "F1SD37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD37" } ] }, { "name": "SYS1", "type": "synonym", "evidence": [ { "id": "XP_005673024", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673024" } ] } ], "protein_names": [ { "name": "Protein SYS1 homolog", "type": "recommended", "evidence": [ { "id": "F1SD37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD37/entry#names_and_taxonomy" } ] }, { "name": "protein SYS1 homolog", "type": "synonym", "evidence": [ { "id": "XP_005673024", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673024" } ] } ], "function": [ { "annotation": "Involved in protein trafficking. May serve as a receptor for ARFRP1.", "evidence": [ { "database": "UniProtKB", "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37#function" }, { "database": "UniProtKB", "id": "ARBA00025508", "url": "https://www.uniprot.org/uniprotkb/ARBA00025508#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYS1", "url": "https://www.uniprot.org/uniprotkb/F1SD37", "locus": { "chromosome": "17", "start_pos": 47694034, "end_pos": 47686258, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007395", "url": "https://www.ensembl.org/id/ENSSSCG00000007395" } ] } } ], "crossref": [ { "id": "ENSSSCG00000007395", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007395", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102162899", "url": "https://www.ncbi.nlm.nih.gov/gene/102162899", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016973", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016973", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102162899", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162899", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EYEMVGM", "url": "https://omabrowser.org/oma/group/EYEMVGM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SD37", "url": "https://www.orthodb.org/?gene=F1SD37", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12952", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12952", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12952:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12952:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09801", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09801", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811440", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005673024", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673024", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD37-1", "url": "https://www.uniprot.org/uniprotkb/F1SD37-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRSELKEIPLNSAPKSNV", "length": 156, "header": "tr|F1SD37-1|F1SD37_PIG Isoform 1 of Protein SYS1 homolog OS=Sus scrofa OX=9823 GN=SYS1 PE=3 SV=1 CANONICAL=F1SD37-1" }, "isoforms": [ { "isoform_ac": "F1SD37-1", "url": "https://www.uniprot.org/uniprotkb/F1SD37/entry#F1SD37-1", "sequence": { "sequence": "MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSTMSFVLNAPTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRSELKEIPLNSAPKSNV", "length": 156, "header": "tr|F1SD37-1|F1SD37_PIG Isoform 1 of Protein SYS1 homolog OS=Sus scrofa OX=9823 GN=SYS1 PE=3 SV=1 CANONICAL=F1SD37-1" }, "locus": { "chromosome": "17", "start_pos": 47691201, "end_pos": 47686686, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008095.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008095.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007879.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007879.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102162899", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162899", "resource": "KEGG Pathway" }, { "id": "R-SSC-6811440", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "resource": "Reactome", "description": "Retrograde transport at the Trans-Golgi-Network" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZY25-1", "protein_name": "Protein SYS1 homolog", "gene_name": "Sys1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDALVRSSPSLDQMFDAEILGFSTPPGRLSMMSFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRTELKEIPLSSAPKSNV", "length": 156 }, "evidence": [ { "id": "F1SD37", "url": "https://omabrowser.org/oma/group/F1SD37/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7FBT7-1", "protein_name": "Protein SYS1 homolog", "gene_name": "sys1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASHFRSYVWDPVLIISQIVLMQCIYYSFLGLWLAGVDGLVQTSRSLDQIFSYEVLGFSTTHGRLSMMAFILNSLTCAFGLWFFIRRGKQCLDFTVTVHFFHMIGCWIYNAHLPAALSWWLVNVACMALMAVIGEYLCMRTELRAIPVNTAPKSNL", "length": 156 }, "evidence": [ { "id": "F1SD37", "url": "https://omabrowser.org/oma/group/F1SD37/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P41544-1", "protein_name": "Protein SYS1", "gene_name": "SYS1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVSIRRYLRVPNELKPSQIFKQDSLSPSKIGLQIVLLQIFYYTTAIVLFYCWAKLAGYDLNIKEWLFSWENIDFTNAYGLSISLLWLLDSLICVFFLTVIVGRSKLAWDFAITIHAINFIVVFLYTRKFPSFSWFFLQILSSLILIFLGTWTTRWRELRDTFFEGLVDPNEGEVGLVTPSQQHSNHSELEQSPIQLKDLESQI", "length": 203 }, "evidence": [ { "id": "F1SD37", "url": "https://omabrowser.org/oma/group/F1SD37/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q1RMQ3-1", "protein_name": "Protein SYS1 homolog", "gene_name": "SYS1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVHSSPSLDQVFDAEILGFSTPPGRLSTMSFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRSELKEIPLNSAPKSSV", "length": 156 }, "evidence": [ { "id": "F1SD37", "url": "https://omabrowser.org/oma/group/F1SD37/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q55E69-1", "protein_name": "Protein SYS1 homolog", "gene_name": "sys1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFYKYNAWDPKLIIGQILSIQCLYYILLAGILYLLDSMFSSSLSLEQMFEYQSINTHSQSGRVVMTAFLINSLFGSFCLKYIVERSKKCLDHSATVTFIHFIIVWIVSGFPKTVVWWAIQLIGMVIMAMIGEYLCMRKELMDIPLQRGKDLDSTPITIPPSPHTSSPIMNPKNNSNGNSGSNNNNNNIFSNSINSSGGSSSSINSIGNSNNPYQPIELEILTHQDKQDEHDD", "length": 232 }, "evidence": [ { "id": "F1SD37", "url": "https://omabrowser.org/oma/group/F1SD37/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q78S06-1", "protein_name": "Protein SYS1 homolog", "gene_name": "Sys1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDALVRSSPSLDQMFDAEILGFSTPPGRLSMMSFVLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRTELKEIPLSSAPKSNV", "length": 156 }, "evidence": [ { "id": "F1SD37", "url": "https://omabrowser.org/oma/group/F1SD37/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N2H4-1", "protein_name": "Protein SYS1 homolog", "gene_name": "SYS1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQAVCIALMAVIGEYLCMRTELKEIPLNSAPKSNV", "length": 156 }, "evidence": [ { "id": "F1SD37", "url": "https://omabrowser.org/oma/group/F1SD37/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VHP1-1", "protein_name": "Protein SYS1 homolog", "gene_name": "Sys1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKGGTFRNTQWDPTLLSSQIVSMQFCVYFTLGLLVFVANKLSGDNYSLDHLFEYHEIHIYDMGGRLVICAFVLNAFLASLALWCIVRRAKLCLDFSCTFHVLHLLICWWYNRSFPANASWWLLNVITGTIMCIGGEFLCLQTEMKEIPVGYAALNQKSDV", "length": 160 }, "evidence": [ { "id": "F1SD37", "url": "https://omabrowser.org/oma/group/F1SD37/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "Golgi to plasma membrane protein transport", "id": "GO:0043001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043001", "evidence": [ { "database": "UniProtKB", "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37" } ], "pmid": "" }, { "name": "Golgi to endosome transport", "id": "GO:0006895", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006895", "evidence": [ { "database": "UniProtKB", "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37" } ], "pmid": "" }, { "name": "protein localization to Golgi apparatus", "id": "GO:0034067", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034067", "evidence": [ { "database": "UniProtKB", "id": "F1SD37", "url": "https://www.uniprot.org/uniprotkb/F1SD37" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SD52-1", "uniprot_ac": "F1SD52", "uniprot_id": "F1SD52_PIG", "mass": { "chemical_mass": 7966.0, "monoisotopic_mass": 7966.0 }, "refseq": { "ac": "XP_001927446", "name": "cytochrome c oxidase subunit 8C, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927446" }, "gene_names": [ { "name": "LOC100157935", "type": "synonym", "evidence": [ { "id": "XP_001927446", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927446" } ] } ], "protein_names": [ { "name": "Cytochrome c oxidase subunit 8", "type": "recommended", "evidence": [ { "id": "F1SD52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD52/entry#names_and_taxonomy" } ] }, { "name": "Cytochrome c oxidase polypeptide VIII", "type": "synonym", "evidence": [ { "id": "F1SD52", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD52/entry#names_and_taxonomy" } ] }, { "name": "cytochrome c oxidase subunit 8C, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_001927446", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927446" } ] } ], "function": [ { "annotation": "Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol-cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and the ATP synthase. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Electrons originating from reduced cytochrome c in the intermembrane space (IMS) are transferred via the dinuclear copper A center (CU(A)) of subunit 2 and heme A of subunit 1 to the active site in subunit 1, a binuclear center (BNC) formed by heme A3 and copper B (CU(B)). The BNC reduces molecular oxygen to 2 water molecules using 4 electrons from cytochrome c in the IMS and 4 protons from the mitochondrial matrix.", "evidence": [ { "database": "UniProtKB", "id": "F1SD52", "url": "https://www.uniprot.org/uniprotkb/F1SD52#function" }, { "database": "UniProtKB", "id": "RU368101", "url": "https://www.uniprot.org/uniprotkb/RU368101#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SD52", "url": "https://www.uniprot.org/uniprotkb/F1SD52" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SD52", "locus": {} } ], "crossref": [ { "id": "F1SD52", "url": "https://alphafold.ebi.ac.uk/entry/F1SD52", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002462", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002462", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00930", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00930", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157935", "url": "https://www.ncbi.nlm.nih.gov/gene/100157935", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003205", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003205", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157935", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157935", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FLTPCGY", "url": "https://omabrowser.org/oma/group/FLTPCGY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SD52", "url": "https://www.orthodb.org/?gene=F1SD52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16717", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16717", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16717:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16717:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02285", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02285", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5628897", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9707564", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9707564", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9864848", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001927446", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927446", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SD52", "url": "https://www.uniprot.org/uniprotkb/F1SD52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD52-1", "url": "https://www.uniprot.org/uniprotkb/F1SD52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRLPVVCLLPRRRVTLLVLQPGQRLAHSEPPRQRPVSTLEVAIALVVFFTAFLTPSGYVLSNLNQFRRE", "length": 70, "header": "tr|F1SD52-1|F1SD52_PIG Isoform 1 of Cytochrome c oxidase subunit 8 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1SD52-1" }, "isoforms": [ { "isoform_ac": "F1SD52-1", "url": "https://www.uniprot.org/uniprotkb/F1SD52/entry#F1SD52-1", "sequence": { "sequence": "MPRLPVVCLLPRRRVTLLVLQPGQRLAHSEPPRQRPVSTLEVAIALVVFFTAFLTPSGYVLSNLNQFRRE", "length": 70, "header": "tr|F1SD52-1|F1SD52_PIG Isoform 1 of Cytochrome c oxidase subunit 8 OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1SD52-1" }, "locus": { "chromosome": "7", "start_pos": 114728860, "end_pos": 114728017, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098761.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098761.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077270.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077270.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SD52", "url": "https://www.uniprot.org/uniprotkb/F1SD52" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157935", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157935", "resource": "KEGG Pathway" }, { "id": "R-SSC-5628897", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "resource": "Reactome", "description": "TP53 Regulates Metabolic Genes" }, { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-9707564", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9707564", "resource": "Reactome", "description": "Cytoprotection by HMOX1" }, { "id": "R-SSC-9864848", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "resource": "Reactome", "description": "Complex IV assembly" } ], "orthologs": [ { "uniprot_canonical_ac": "Q7Z4L0-1", "protein_name": "Cytochrome c oxidase subunit 8C, mitochondrial", "gene_name": "COX8C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLLRGRCPARRHYRRLALLGLQPAPRFAHSGPPRQRPLSAAEMAVGLVVFFTTFLTPAAYVLGNLKQFRRN", "length": 72 }, "evidence": [ { "id": "F1SD52", "url": "https://omabrowser.org/oma/group/F1SD52/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SD52", "url": "https://www.uniprot.org/uniprotkb/F1SD52" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SD52", "url": "https://www.uniprot.org/uniprotkb/F1SD52" } ], "pmid": "" }, { "name": "respiratory chain complex IV", "id": "GO:0045277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045277", "evidence": [ { "database": "UniProtKB", "id": "F1SD52", "url": "https://www.uniprot.org/uniprotkb/F1SD52" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial electron transport, cytochrome c to oxygen", "id": "GO:0006123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006123", "evidence": [ { "database": "UniProtKB", "id": "F1SD52", "url": "https://www.uniprot.org/uniprotkb/F1SD52" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SD52-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 70, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SD52-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SD52" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SD75-1", "uniprot_ac": "F1SD75", "uniprot_id": "F1SD75_PIG", "mass": { "chemical_mass": 29264.0, "monoisotopic_mass": 29264.0 }, "refseq": {}, "gene_names": [ { "name": "NANOS3", "type": "recommended", "evidence": [ { "id": "F1SD75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD75" } ] } ], "protein_names": [ { "name": "Nanos C2HC-type zinc finger 3", "type": "synonym", "evidence": [ { "id": "F1SD75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD75/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SD75", "url": "https://www.uniprot.org/uniprotkb/F1SD75" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NANOS3", "url": "https://www.uniprot.org/uniprotkb/F1SD75", "locus": { "chromosome": "2", "start_pos": 65274849, "end_pos": 65278689, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013759", "url": "https://www.ensembl.org/id/ENSSSCG00000013759" } ] } } ], "crossref": [ { "id": "F1SD75", "url": "https://alphafold.ebi.ac.uk/entry/F1SD75", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013759", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013759", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12887", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12887", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05741", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05741", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SD75", "url": "https://www.uniprot.org/uniprotkb/F1SD75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD75-1", "url": "https://www.uniprot.org/uniprotkb/F1SD75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPLCWCPLHPVSWTMHSFGRCIFGGAAASPPVTIRNLPQPAPPSSHPLGGIRRELTAQTPGLQREKGRGRGKGIEGRSLGWLGFFSLSALSPGTLCPAMGTFNLWTDYLGLARLVGALRGEEEPETRLDPQPAPVPGPEGQRPSPESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCPLTSQGYTSVYSYTTRNSAGKKLARPDKARTQDSGHRRGGGGGGASTGSKGAGKSSGTSPSPCCPSTSA", "length": 276, "header": "tr|F1SD75-1|F1SD75_PIG Isoform 1 of Nanos C2HC-type zinc finger 3 OS=Sus scrofa OX=9823 GN=NANOS3 PE=3 SV=4 CANONICAL=F1SD75-1" }, "isoforms": [ { "isoform_ac": "F1SD75-1", "url": "https://www.uniprot.org/uniprotkb/F1SD75/entry#F1SD75-1", "sequence": { "sequence": "MAPLCWCPLHPVSWTMHSFGRCIFGGAAASPPVTIRNLPQPAPPSSHPLGGIRRELTAQTPGLQREKGRGRGKGIEGRSLGWLGFFSLSALSPGTLCPAMGTFNLWTDYLGLARLVGALRGEEEPETRLDPQPAPVPGPEGQRPSPESSPAPERLCSFCKHNGESRAIYQSHVLKDEAGRVLCPILRDYVCPQCGATRERAHTRRFCPLTSQGYTSVYSYTTRNSAGKKLARPDKARTQDSGHRRGGGGGGASTGSKGAGKSSGTSPSPCCPSTSA", "length": 276, "header": "tr|F1SD75-1|F1SD75_PIG Isoform 1 of Nanos C2HC-type zinc finger 3 OS=Sus scrofa OX=9823 GN=NANOS3 PE=3 SV=4 CANONICAL=F1SD75-1" }, "locus": { "chromosome": "2", "start_pos": 65278689, "end_pos": 65275456, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015033.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015033.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014628.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014628.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SD75", "url": "https://www.uniprot.org/uniprotkb/F1SD75" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1SD75", "url": "https://www.uniprot.org/uniprotkb/F1SD75" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SD75", "url": "https://www.uniprot.org/uniprotkb/F1SD75" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1SD75", "url": "https://www.uniprot.org/uniprotkb/F1SD75" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of translation", "id": "GO:0017148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017148", "evidence": [ { "database": "UniProtKB", "id": "F1SD75", "url": "https://www.uniprot.org/uniprotkb/F1SD75" } ], "pmid": "" }, { "name": "oogenesis", "id": "GO:0048477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048477", "evidence": [ { "database": "UniProtKB", "id": "F1SD75", "url": "https://www.uniprot.org/uniprotkb/F1SD75" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SD75-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 276, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SD75-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SD75" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SD75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD75" }, { "id": "PS51522", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51522" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nanos-type", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 209, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SD98-1", "uniprot_ac": "F1SD98", "uniprot_id": "F1SD98_PIG", "mass": { "chemical_mass": 71877.0, "monoisotopic_mass": 71877.0 }, "refseq": { "ac": "XP_020935622", "name": "tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935622" }, "gene_names": [ { "name": "TRMT1", "type": "recommended", "evidence": [ { "id": "F1SD98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ] }, { "name": "TRMT1", "type": "synonym", "evidence": [ { "id": "XP_020935622", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935622" } ] } ], "protein_names": [ { "name": "tRNA (guanine(26)-N(2))-dimethyltransferase", "type": "recommended", "evidence": [ { "id": "F1SD98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD98/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.216", "type": "synonym", "evidence": [ { "id": "F1SD98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD98/entry#names_and_taxonomy" } ] }, { "name": "tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020935622", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935622" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRMT1", "url": "https://www.uniprot.org/uniprotkb/F1SD98", "locus": { "chromosome": "2", "start_pos": 65949324, "end_pos": 65940125, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013744", "url": "https://www.ensembl.org/id/ENSSSCG00000013744" } ] } } ], "crossref": [ { "id": "F1SD98", "url": "https://alphafold.ebi.ac.uk/entry/F1SD98", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013744", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013744", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627711", "url": "https://www.ncbi.nlm.nih.gov/gene/100627711", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002905", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002905", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SD98", "url": "https://www.orthodb.org/?gene=F1SD98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10631", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10631", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10631:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10631:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00642", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00642", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02005", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02005", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020935622", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935622", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "43140", "url": "https://www.rhea-db.org/rhea/43140", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SD98-1", "url": "https://www.uniprot.org/uniprotkb/F1SD98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRGRIVLWLSLTLRSARSICRARFMEGQPQGPPDPAAMENGTEHRGEEFPPEAQETTVTEGAAKIVFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDLQKVVVDLSEQEEDKAEVKEGAPGDQPGTAAVGDICEEGLRVLEGLAASGLRSIRFAREVPGLRSVVANDASARAVDLMRRNVQLNDVAHLVQPSQADARMLMYQHQKASERFDVIDLDPYGSPAPFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLDLRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLGKASGAAGGRVKFSAACGPPVAPECEHCGQRHQLGGPMWAEPLHDLDFVGQVLEAVSANPGRFHTAERIRGVLSVITEELPDVPLYYTLDQLSSTIHCSTPSLLQLRSALLHAGFRVSLSHACKNAVKTDAPSSALWDIMRCWEKQCPVKRERLSETSPAFRILSVEPRLQANFTIRDDANPSSRQRGLKRFQANPEANWGPRPRARPGGKAAGEEAMEERRRLLQNKRKEPPEDPAQRAARLKTFPCKRFKEGTCQRGDQCCYSHSSQTPKATAEATPTDCPEAPSQNPLGPGAASGLGID", "length": 660, "header": "tr|F1SD98-1|F1SD98_PIG Isoform 1 of tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sus scrofa OX=9823 GN=TRMT1 PE=3 SV=4 CANONICAL=F1SD98-1" }, "isoforms": [ { "isoform_ac": "F1SD98-1", "url": "https://www.uniprot.org/uniprotkb/F1SD98/entry#F1SD98-1", "sequence": { "sequence": "MSRGRIVLWLSLTLRSARSICRARFMEGQPQGPPDPAAMENGTEHRGEEFPPEAQETTVTEGAAKIVFPSANEVFYNPVQEFNRDLTCAVITEFARIQLGAKGIQIKVPGEKDLQKVVVDLSEQEEDKAEVKEGAPGDQPGTAAVGDICEEGLRVLEGLAASGLRSIRFAREVPGLRSVVANDASARAVDLMRRNVQLNDVAHLVQPSQADARMLMYQHQKASERFDVIDLDPYGSPAPFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGETCYSKYGAMALKSRACHEMALRIVLHSLDLRANCYQRFVVPLLSISADFYVRVFVRVFTGQAKVKASASKQALVFQCVGCGAFHLQRLGKASGAAGGRVKFSAACGPPVAPECEHCGQRHQLGGPMWAEPLHDLDFVGQVLEAVSANPGRFHTAERIRGVLSVITEELPDVPLYYTLDQLSSTIHCSTPSLLQLRSALLHAGFRVSLSHACKNAVKTDAPSSALWDIMRCWEKQCPVKRERLSETSPAFRILSVEPRLQANFTIRDDANPSSRQRGLKRFQANPEANWGPRPRARPGGKAAGEEAMEERRRLLQNKRKEPPEDPAQRAARLKTFPCKRFKEGTCQRGDQCCYSHSSQTPKATAEATPTDCPEAPSQNPLGPGAASGLGID", "length": 660, "header": "tr|F1SD98-1|F1SD98_PIG Isoform 1 of tRNA (guanine(26)-N(2))-dimethyltransferase OS=Sus scrofa OX=9823 GN=TRMT1 PE=3 SV=4 CANONICAL=F1SD98-1" }, "locus": { "chromosome": "2", "start_pos": 65949293, "end_pos": 65940483, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015018.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015018.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014613.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014613.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "tRNA N2-guanine methylation", "id": "GO:0002940", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002940", "evidence": [ { "database": "UniProtKB", "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ], "pmid": "" }, { "name": "tRNA processing", "id": "GO:0008033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008033", "evidence": [ { "database": "UniProtKB", "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ], "pmid": "" }, { "name": "tRNA (guanine(26)-N2)-dimethyltransferase activity", "id": "GO:0160104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160104", "evidence": [ { "database": "UniProtKB", "id": "F1SD98", "url": "https://www.uniprot.org/uniprotkb/F1SD98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 531, "end_pos": 533, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "43140", "name": "", "equation": "guanosine(26) in tRNA + 2 S-adenosyl-L-methionine = N(2)-dimethylguanosine(26) in tRNA + 2 S-adenosyl-L-homocysteine + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "43140", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/43140" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SD98-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 660, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SD98-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SD98" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SD98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SD98" }, { "id": "PS50103", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50103" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C3H1-type", "eco_id": "ECO_0000259", "start_pos": 600, "end_pos": 627, "start_aa": "Arg", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 41, "end_pos": 43 }, { "start_pos": 531, "end_pos": 533 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDA5-1", "uniprot_ac": "F1SDA5", "uniprot_id": "F1SDA5_PIG", "mass": { "chemical_mass": 133051.0, "monoisotopic_mass": 133051.0 }, "refseq": {}, "gene_names": [ { "name": "NRDE2", "type": "recommended", "evidence": [ { "id": "F1SDA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ] } ], "protein_names": [ { "name": "Nuclear exosome regulator NRDE2", "type": "recommended", "evidence": [ { "id": "F1SDA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDA5/entry#names_and_taxonomy" } ] }, { "name": "Protein NRDE2 homolog", "type": "synonym", "evidence": [ { "id": "F1SDA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDA5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Protein of the nuclear speckles that regulates RNA degradation and export from the nucleus through its interaction with MTREX an essential factor directing various RNAs to exosomal degradation. Changes the conformation of MTREX, precluding its association with the nuclear exosome and interaction with proteins required for its function in RNA exosomal degradation. Negatively regulates, for instance, the degradation of mRNAs and lncRNAs by inhibiting their MTREX-mediated recruitment to nuclear exosome. By preventing the degradation of RNAs in the nucleus, it promotes their export to the cytoplasm. U5 snRNP-associated RNA splicing factor which is required for efficient splicing of CEP131 pre-mRNA and plays an important role in centrosome maturation, integrity and function during mitosis. Suppresses intron retention in a subset of pre-mRNAs containing short, GC-rich introns with relatively weak 5' and 3' splice sites. Plays a role in DNA damage response.", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5#function" }, { "database": "UniProtKB", "id": "ARBA00059813", "url": "https://www.uniprot.org/uniprotkb/ARBA00059813#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NRDE2", "url": "https://www.uniprot.org/uniprotkb/F1SDA5", "locus": { "chromosome": "7", "start_pos": 112038234, "end_pos": 112090510, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002434", "url": "https://www.ensembl.org/id/ENSSSCG00000002434" } ] } } ], "crossref": [ { "id": "F1SDA5", "url": "https://alphafold.ebi.ac.uk/entry/F1SDA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002434", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002434", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013633", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013633", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13471", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13471", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13471:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13471:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SDA5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALFPAFAGVSEAPSSGSSRKELDWLSNPSFCVGTITSLSRQTEEATPLVSQGTALTRSPLKSERSDESDTNRKPTQTSRKKKKEKKKKRKHQHHKKTKRKRGQSSSSGSESDTDSEKDKPSRSIRDGNKESEKPNQENNAAADNGRRFVWLEDIQPLTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSMEKKRSHKHVERYFTKKNVGLMNIDGVAISSKTELLSSEPISFIPVEGSEDVVSPVTTWLNPLGIYDQATTQWLQGQGPSEQESQQPDAQPDRESALLKAKVEEFNRKVRENPRDIQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLRLVLEKKLAILERAIESNQSSVELKLAKLRLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIQSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFGLFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVVNPDDDDDEPEDDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPDLQFQLISAFLQFLGVPSGFSPPASCLYQAMDENSIFDNGLYDERPLTFLNLSFSGISCVGRTDQLGCRRWTRGHHREGEEFIRNVFHLVMPLFSGTERSQLCFSWLRYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPDNRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSIAGSRELKDHELCELSLLYAELEVELLPDMRGAATARAVHILTRLTENGPYGPYTGQVLAVHILKARKAYEHALQDCLGEGSLSDPAPPDSSNRLVSLVKCFMLFQYLTTGIDAAVRIYEQVFAKLKGSVSAEGCGLEGSSSPRSLSGVLEAAALMHTSLLRFHMKVSVYPLAPLREALSEALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFNTMTRSAKPLEPWLFAIEAERMRKSLVETVQRVDGREVHATIPETGLTHRISALFEQALRSDHGSQCPLLWRMYLKFLVSLGNKERSKGVFYKALQNCPWAKVLYMDAVEHFPDEMQEILDLMTEKELRVRLPLEELELLLED", "length": 1165, "header": "tr|F1SDA5-1|F1SDA5_PIG Isoform 1 of Nuclear exosome regulator NRDE2 OS=Sus scrofa OX=9823 GN=NRDE2 PE=3 SV=3 CANONICAL=F1SDA5-1" }, "isoforms": [ { "isoform_ac": "F1SDA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SDA5/entry#F1SDA5-1", "sequence": { "sequence": "MALFPAFAGVSEAPSSGSSRKELDWLSNPSFCVGTITSLSRQTEEATPLVSQGTALTRSPLKSERSDESDTNRKPTQTSRKKKKEKKKKRKHQHHKKTKRKRGQSSSSGSESDTDSEKDKPSRSIRDGNKESEKPNQENNAAADNGRRFVWLEDIQPLTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSMEKKRSHKHVERYFTKKNVGLMNIDGVAISSKTELLSSEPISFIPVEGSEDVVSPVTTWLNPLGIYDQATTQWLQGQGPSEQESQQPDAQPDRESALLKAKVEEFNRKVRENPRDIQLWMAFVAFQDEVMKSPGLYAIEEGEQEKRKRSLRLVLEKKLAILERAIESNQSSVELKLAKLRLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIQSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFGLFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVVNPDDDDDEPEDDDQEIKDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSPDLQFQLISAFLQFLGVPSGFSPPASCLYQAMDENSIFDNGLYDERPLTFLNLSFSGISCVGRTDQLGCRRWTRGHHREGEEFIRNVFHLVMPLFSGTERSQLCFSWLRYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPDNRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSIAGSRELKDHELCELSLLYAELEVELLPDMRGAATARAVHILTRLTENGPYGPYTGQVLAVHILKARKAYEHALQDCLGEGSLSDPAPPDSSNRLVSLVKCFMLFQYLTTGIDAAVRIYEQVFAKLKGSVSAEGCGLEGSSSPRSLSGVLEAAALMHTSLLRFHMKVSVYPLAPLREALSEALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFNTMTRSAKPLEPWLFAIEAERMRKSLVETVQRVDGREVHATIPETGLTHRISALFEQALRSDHGSQCPLLWRMYLKFLVSLGNKERSKGVFYKALQNCPWAKVLYMDAVEHFPDEMQEILDLMTEKELRVRLPLEELELLLED", "length": 1165, "header": "tr|F1SDA5-1|F1SDA5_PIG Isoform 1 of Nuclear exosome regulator NRDE2 OS=Sus scrofa OX=9823 GN=NRDE2 PE=3 SV=3 CANONICAL=F1SDA5-1" }, "locus": { "chromosome": "7", "start_pos": 112090498, "end_pos": 112042903, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002704.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002704.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002635.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002635.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "positive regulation of RNA export from nucleus", "id": "GO:0046833", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046833", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "mRNA stabilization", "id": "GO:0048255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048255", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "regulatory ncRNA-mediated heterochromatin formation", "id": "GO:0031048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031048", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "negative regulation of RNA catabolic process", "id": "GO:1902369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902369", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SDA5", "url": "https://www.uniprot.org/uniprotkb/F1SDA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1010, "end_pos": 1012, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 682, "end_pos": 684, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDA5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1165, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDA5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDA5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1010, "end_pos": 1012 }, { "start_pos": 378, "end_pos": 380 }, { "start_pos": 414, "end_pos": 416 }, { "start_pos": 682, "end_pos": 684 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDA6-1", "uniprot_ac": "F1SDA6", "uniprot_id": "F1SDA6_PIG", "mass": { "chemical_mass": 45739.0, "monoisotopic_mass": 45739.0 }, "refseq": { "ac": "NP_001231525", "name": "potassium channel subfamily K member 13", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231525" }, "gene_names": [ { "name": "KCNK13", "type": "recommended", "evidence": [ { "id": "F1SDA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ] }, { "name": "KCNK13", "type": "synonym", "evidence": [ { "id": "NP_001231525", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231525" } ] } ], "protein_names": [ { "name": "Potassium two pore domain channel subfamily K member 13", "type": "synonym", "evidence": [ { "id": "F1SDA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDA6/entry#names_and_taxonomy" } ] }, { "name": "potassium channel subfamily K member 13", "type": "synonym", "evidence": [ { "id": "NP_001231525", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231525" } ] }, { "name": "potassium channel, subfamily K, member 13", "type": "synonym", "evidence": [ { "id": "NP_001231525", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231525" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNK13", "url": "https://www.uniprot.org/uniprotkb/F1SDA6", "locus": { "chromosome": "7", "start_pos": 111980663, "end_pos": 111867546, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002432", "url": "https://www.ensembl.org/id/ENSSSCG00000002432" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002432", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002432", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623906", "url": "https://www.ncbi.nlm.nih.gov/gene/100623906", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623906", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623906", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NFTRRHN", "url": "https://omabrowser.org/oma/group/NFTRRHN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDA6", "url": "https://www.orthodb.org/?gene=F1SDA6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11003:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11003:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1299287", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1299287", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5576886", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576886", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231525", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231525", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29463", "url": "https://www.rhea-db.org/rhea/29463", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDA6-1", "url": "https://www.uniprot.org/uniprotkb/F1SDA6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGRSCGCSCGLGHLNEDNARFLLLAALIVLYLLGGAAVFSALELAHERQAKQRWEERLANFSRRHNLSRDELRGFLRHYEEATEAGIRVDNVRQRWDFTGAFYFVGTVVSTIGFGMTTPVTVGGKIFLIFYGLLGCSSTILFFNLFLERLITVIAFIMRSCHQRQLQRRGALPQESRKNLGKGEVDSLAGWKPSVYYVMLILCVASLLISCCASAMYTSMEGWSYFDALYFCFVAFSTIGFGDLVSSQNTQYGSQGLYRFANFVFILMGVCCIYSLFNVISILIKQSMNWILRKMDGGCCQQCQRRLWQSRRNVVMPGNVHNRCNISIDTDGVVESDADGRRLSGEMISMKDFLATNKVSLAILQKQLSETANGCPHQTSTLSLDNDFSGGVGAFAIMNNRLAETSGDR", "length": 410, "header": "tr|F1SDA6-1|F1SDA6_PIG Isoform 1 of Potassium two pore domain channel subfamily K member 13 OS=Sus scrofa OX=9823 GN=KCNK13 PE=3 SV=1 CANONICAL=F1SDA6-1" }, "isoforms": [ { "isoform_ac": "F1SDA6-1", "url": "https://www.uniprot.org/uniprotkb/F1SDA6/entry#F1SDA6-1", "sequence": { "sequence": "MAGRSCGCSCGLGHLNEDNARFLLLAALIVLYLLGGAAVFSALELAHERQAKQRWEERLANFSRRHNLSRDELRGFLRHYEEATEAGIRVDNVRQRWDFTGAFYFVGTVVSTIGFGMTTPVTVGGKIFLIFYGLLGCSSTILFFNLFLERLITVIAFIMRSCHQRQLQRRGALPQESRKNLGKGEVDSLAGWKPSVYYVMLILCVASLLISCCASAMYTSMEGWSYFDALYFCFVAFSTIGFGDLVSSQNTQYGSQGLYRFANFVFILMGVCCIYSLFNVISILIKQSMNWILRKMDGGCCQQCQRRLWQSRRNVVMPGNVHNRCNISIDTDGVVESDADGRRLSGEMISMKDFLATNKVSLAILQKQLSETANGCPHQTSTLSLDNDFSGGVGAFAIMNNRLAETSGDR", "length": 410, "header": "tr|F1SDA6-1|F1SDA6_PIG Isoform 1 of Potassium two pore domain channel subfamily K member 13 OS=Sus scrofa OX=9823 GN=KCNK13 PE=3 SV=1 CANONICAL=F1SDA6-1" }, "locus": { "chromosome": "7", "start_pos": 111980482, "end_pos": 111867745, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002702.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002702.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002633.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002633.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623906", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623906", "resource": "KEGG Pathway" }, { "id": "R-SSC-1299287", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1299287", "resource": "Reactome", "description": "Tandem pore domain halothane-inhibited K+ channel (THIK)" }, { "id": "R-SSC-5576886", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576886", "resource": "Reactome", "description": "Phase 4 - resting membrane potential" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P3M3-1", "protein_name": "Potassium two pore domain channel subfamily K member 13", "gene_name": "KCNK13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MACGGCCCSGAGRLNADNARFLLLAVLIALYMLCGAAVFSAIELPGERRAKQRWEERLQNFTRRHNLSRAELRDFLREYEEASVAGIRVDDIRPRWDFTGAFYFVGTVVSTIGFGMTTPATVGGKIFLIFYGLIGCAGTILFFNLFLERLITVIAYVMKSCHERQLRRKGVLPHDGRRGSGTSEADSLAGWKPSVYYVMLILCIASLIISCCASAMYTPIEGWSYFDSLYFCFVAFSTIGFGDLVSSQNTHYESQGLYRFGNFVFILMGVCCIYSLFNVISIVIKQSINWILKKLDCRCCHRCQRKLFRSRRNVVMPGNVRGRRNISIETDIVNESDTDGRRLSGEMISMKDFLASNKVSLAIMQKQLSETANGYPRQMSSKQNGFSGGVGALAIMNNRLAETSVDR", "length": 407 }, "evidence": [ { "id": "F1SDA6", "url": "https://omabrowser.org/oma/group/F1SDA6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8R1P5-1", "protein_name": "Potassium channel subfamily K member 13", "gene_name": "Kcnk13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGRGCGCSPGHLNEDNARFLLLAGLILLYLLGGAAVFSALELAQELQAKQRWEERLANFSRGHNLSREELRGFLRHYEEATRAGIRMDSVRPRWDFTGAFYFVGTVVSTIGFGMTTPATTGGKIFLIFYGLIGCASTILFFNLFLERLITVIACVMRSCHQQQLRRRGAVTQDNMKAPEKGEADSLTGWKPSVYYVMLILCLASVAISCGASALYTTMEGWSYFDSVYFCFVAFSTIGFGDLVSSQNAQYESQGLYRFFNFFLILMGVCCIYSLFNVISILIKQTVNWILRKLDSGCFPPCQRGLLRSRRNVVMPGNIRNRCNISIETDGVMESDTDGRRLSGEMISMKDTNKVSLAILQKQLSEMANGGPHQNSASSRDDEFSGGVGAFAVMNNRLAETSGDR", "length": 405 }, "evidence": [ { "id": "F1SDA6", "url": "https://omabrowser.org/oma/group/F1SDA6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ERS0-1", "protein_name": "Potassium channel subfamily K member 13", "gene_name": "Kcnk13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRGCSCSPGHLNEDNARFLLLAGLILLYLLGGAAVFSALELAQELQAKQRWEERLANFSRGHNLSREELRGFLRHYEEATKAGIRMDSVRPRWDFTGAFYFVGTVVTTIGFGMTTPATTGGKVFLIFYGLIGCASTILFFNLFLERLITVIAYVMRTCHHQQLRRRGTVARDNRKAPRKGEADSLAGWKPSVYYVMLILCLASVAISCGASALYTTMEGWSYFDSVYFCFVASSTIGFGDLVSSQNAQYENEGLYRFVNFFFILMGVCCIYSMFNVISILIKQTVNWILRKLDSGCFPQCQRGLLRSRRNVVMPGNIRNRCNISIETDGVMESDTDGRRLSGEMISMKDTNKVSLAILQKQLSEMANGGPHQTSTSSRDDEFSGGVGAFAVMNNRLAETSGDR", "length": 405 }, "evidence": [ { "id": "F1SDA6", "url": "https://omabrowser.org/oma/group/F1SDA6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9HB14-1", "protein_name": "Potassium channel subfamily K member 13", "gene_name": "KCNK13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGRGFSWGPGHLNEDNARFLLLAALIVLYLLGGAAVFSALELAHERQAKQRWEERLANFSRGHNLSRDELRGFLRHYEEATRAGIRVDNVRPRWDFTGAFYFVGTVVSTIGFGMTTPATVGGKIFLIFYGLVGCSSTILFFNLFLERLITIIAYIMKSCHQRQLRRRGALPQESLKDAGQCEVDSLAGWKPSVYYVMLILCTASILISCCASAMYTPIEGWSYFDSLYFCFVAFSTIGFGDLVSSQNAHYESQGLYRFANFVFILMGVCCIYSLFNVISILIKQSLNWILRKMDSGCCPQCQRGLLRSRRNVVMPGSVRNRCNISIETDGVAESDTDGRRLSGEMISMKDLLAANKASLAILQKQLSEMANGCPHQTSTLARDNEFSGGVGAFAIMNNRLAETSGDR", "length": 408 }, "evidence": [ { "id": "F1SDA6", "url": "https://omabrowser.org/oma/group/F1SDA6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of NLRP3 inflammasome complex assembly", "id": "GO:1900225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900225", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" }, { "name": "regulation of resting membrane potential", "id": "GO:0060075", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060075", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" }, { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" }, { "name": "regulation of excitatory synapse pruning", "id": "GO:1905810", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905810", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "outward rectifier potassium channel activity", "id": "GO:0015271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015271", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" }, { "name": "potassium ion leak channel activity", "id": "GO:0022841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022841", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" }, { "name": "monoatomic ion channel complex", "id": "GO:0034702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034702", "evidence": [ { "database": "UniProtKB", "id": "F1SDA6", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 326, "end_pos": 328, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29463", "name": "", "equation": "K(+)(in) = K(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29463", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29463" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDA6" }, { "id": "PF07885", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07885" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Potassium channel", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 151, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 326, "end_pos": 328 }, { "start_pos": 61, "end_pos": 63 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDB3-1", "uniprot_ac": "F1SDB3", "uniprot_id": "F1SDB3_PIG", "mass": { "chemical_mass": 110376.0, "monoisotopic_mass": 110376.0 }, "refseq": {}, "gene_names": [ { "name": "ULK2", "type": "recommended", "evidence": [ { "id": "F1SDB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ] } ], "protein_names": [ { "name": "non-specific serine/threonine protein kinase", "type": "recommended", "evidence": [ { "id": "F1SDB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDB3/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "F1SDB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDB3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ULK2", "url": "https://www.uniprot.org/uniprotkb/F1SDB3", "locus": { "chromosome": "12", "start_pos": 59878388, "end_pos": 59806955, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018045", "url": "https://www.ensembl.org/id/ENSSSCG00000018045" } ] } } ], "crossref": [ { "id": "F1SDB3", "url": "https://alphafold.ebi.ac.uk/entry/F1SDB3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000018045", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018045", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022708", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022708", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SFFSHPF", "url": "https://omabrowser.org/oma/group/SFFSHPF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24348", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24348", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24348:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24348:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12063", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12063", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21127", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21127", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDB3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVVGDFEYSKRDLVGHGAFAVVFRGRHRQKTDWEVAIKSINKKNLSKSQLLLGKEIKILKELQHENIVALYDVQELPNSVFLVMEYCNGGDLADYLQAKGTLREDTIRVFLLQIAAAMRVLHSKGIIHRDLKPQNILLSHAGRRKASVSGIRVKIADFGFARYLHSNMMAATLCGSPMYMAPEVIMSQHYDAKADLWSIGTVIYQCLVGKPPFQANSPQDLRIFYEKNRNLMPSIPRETSPYLAHLLLGLLQRNQKDRMDFEAFFSHPFLDQVPVKKSCPVPVPVPVPAGAIPGSSCGSSPSCRFVSPPSLADAQHIQESASSPPPGAAGFLHLSRDSASSSSKNSSCDTDDFVLVPHSVSSEHPHDMPVGIAGRRASNEFLVCGGPCQPTAPPPSEAAPVPVPTQLRNYQRIEQNLTSAASPGASLHGSPRSAVVRRSNTSPMGFPRPGSCSPAPADAAQTVGRRLSTGSCRPYSPSPLVGAVPEPPSQCCCGHPQGPETRSRSASGSPVPPAPAPQSLPLGARLQSAPTLTDIYQNKQKLRKQHSDPVCPPHAGATYSCSPQPGRPGSLGTSPTKHASCSPRSSDWFCKTPLPTIIGSPTKTTAPFKIPKTQASSNLLALVTRPGPSEGPSRDGNDPQAGAPGLSGQGGERRKAAEQPIKAVFGRSVSAGKLSDPHVRAPLGGHQGGAYSLSAERPMDVAPAGACGSALAPPVGLAAGPRAALFTVGSPPHGAAAPACGHVALRAGPASGGASSAGGSLCSASGRVCVGSPPGLCLGSSPPGAEAAPSLRHVPYGASPPSLEGLITFEAPELPEETLMEREHTDTLRHLNAMLLFAECVLDLTAGRGASPELCASAVSLYQIQESAVVDQIGQLSRDWGRVEQLVLYMKAAQLLAASLHLAKEQIKSGKLSPSTGVKQVVKNLNERYKFCITMCKKLTEKLHRFFSDKQRFIDEINSVTAEKLIYNCAVEMVQAAALDEMFQQTEDIVCRYHKAALLLEGLAKILQDPADVENVHKYKSSIERRLSALCCSSSTT", "length": 1038, "header": "tr|F1SDB3-1|F1SDB3_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=ULK2 PE=4 SV=3 CANONICAL=F1SDB3-1" }, "isoforms": [ { "isoform_ac": "F1SDB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDB3/entry#F1SDB3-1", "sequence": { "sequence": "MEVVGDFEYSKRDLVGHGAFAVVFRGRHRQKTDWEVAIKSINKKNLSKSQLLLGKEIKILKELQHENIVALYDVQELPNSVFLVMEYCNGGDLADYLQAKGTLREDTIRVFLLQIAAAMRVLHSKGIIHRDLKPQNILLSHAGRRKASVSGIRVKIADFGFARYLHSNMMAATLCGSPMYMAPEVIMSQHYDAKADLWSIGTVIYQCLVGKPPFQANSPQDLRIFYEKNRNLMPSIPRETSPYLAHLLLGLLQRNQKDRMDFEAFFSHPFLDQVPVKKSCPVPVPVPVPAGAIPGSSCGSSPSCRFVSPPSLADAQHIQESASSPPPGAAGFLHLSRDSASSSSKNSSCDTDDFVLVPHSVSSEHPHDMPVGIAGRRASNEFLVCGGPCQPTAPPPSEAAPVPVPTQLRNYQRIEQNLTSAASPGASLHGSPRSAVVRRSNTSPMGFPRPGSCSPAPADAAQTVGRRLSTGSCRPYSPSPLVGAVPEPPSQCCCGHPQGPETRSRSASGSPVPPAPAPQSLPLGARLQSAPTLTDIYQNKQKLRKQHSDPVCPPHAGATYSCSPQPGRPGSLGTSPTKHASCSPRSSDWFCKTPLPTIIGSPTKTTAPFKIPKTQASSNLLALVTRPGPSEGPSRDGNDPQAGAPGLSGQGGERRKAAEQPIKAVFGRSVSAGKLSDPHVRAPLGGHQGGAYSLSAERPMDVAPAGACGSALAPPVGLAAGPRAALFTVGSPPHGAAAPACGHVALRAGPASGGASSAGGSLCSASGRVCVGSPPGLCLGSSPPGAEAAPSLRHVPYGASPPSLEGLITFEAPELPEETLMEREHTDTLRHLNAMLLFAECVLDLTAGRGASPELCASAVSLYQIQESAVVDQIGQLSRDWGRVEQLVLYMKAAQLLAASLHLAKEQIKSGKLSPSTGVKQVVKNLNERYKFCITMCKKLTEKLHRFFSDKQRFIDEINSVTAEKLIYNCAVEMVQAAALDEMFQQTEDIVCRYHKAALLLEGLAKILQDPADVENVHKYKSSIERRLSALCCSSSTT", "length": 1038, "header": "tr|F1SDB3-1|F1SDB3_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=ULK2 PE=4 SV=3 CANONICAL=F1SDB3-1" }, "locus": { "chromosome": "12", "start_pos": 59876293, "end_pos": 59806982, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019640.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019640.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019120.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019120.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3Z9J7-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Ulk2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVVGDFEYSKRDLVGHGAFAVVFRGRHRQKTDWEVAIKSINKKNLSKSQILLGKEIKILKELQHENIVALYDVQELPNSVFLVMEYCNGGDLADYLQAKGTLSEDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILLSYASRRKSNVSGIRIKIADFGFARYLHSNTMAATLCGSPMYMAPEVIMSQHYDAKADLWSIGTVIYQCLVGKPPFQANSPQDLRMFYEKNRSLMPSIPRETSPYLANLLLGLLQRNQKDRMDFEAFFSHPFLEQVPVRKSCPVPVPVYSGPGPGSSCSSSPPCRFASPPSLPDMQHIQEENLSSPPLGPPNYLQVSKDSASNSSKNSSCDTDDFVLVPHNISSDHSYDMPMGTAGRRASNEFFVCGGQCQPTVSPHSETAPIPVPTQVRNYQRIEQNLISTASSGTNPHSSPRSAVVRRSNTSPMGFLRVGSCSPVPADTVQTGGRRLSTGSSRPYSPSPLVGTIPEQFSQCCCGHPQGHEARSRHSSGSPVPQTQSPQSLLLGARLQSAPTLTDIYQNKQKLRKQHSDPVCPSLAGAGYSYSPQPSRPGSLGTSPTKHMGSSPRSSDWFFKTPLPTIIGSPTKTTAPFKIPKTQASSNLLALVTRHGPAESQSKDGNDPRQCSHCLLVQGSERHRSEQQSKAVFGRSVSTGKLSEQQHVKAPLGGHQGSTDSLNTERPMDVAPAGACGVVLALPAGTAASARAVLFTVGSPPHSATAPTCTHMVLRTRTTSVGSNSSGGSLCSASGRVCVGSPPAPGFGSSPPGAEAAPSLRYVPYGASPPSLEGLITFEAPELPEETLMEREHTDTLRHLNMMLMFTECVLDLTAVRGGNPELCTSAVSLYQIQESVVVDQISQLSKDWGRVEQLVLYMKAAQLLAASLHLAKAQIKSGKLSPSTAVKQVVKNLNERYKFCITMCKKLTEKLNRFFSDKQRFIDEINSVTAEKLIYNCAVEMVQSAALDEMFQQTEDIVQRYHKAALLLEGLSKILQDPADAESVHKYKCSIERRLSALCCSTAAV", "length": 1037 }, "evidence": [ { "id": "F1SDB3", "url": "https://omabrowser.org/oma/group/F1SDB3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8IYT8-1", "protein_name": "Serine/threonine-protein kinase ULK2", "gene_name": "ULK2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVVGDFEYSKRDLVGHGAFAVVFRGRHRQKTDWEVAIKSINKKNLSKSQILLGKEIKILKELQHENIVALYDVQELPNSVFLVMEYCNGGDLADYLQAKGTLSEDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILLSYANRRKSSVSGIRIKIADFGFARYLHSNMMAATLCGSPMYMAPEVIMSQHYDAKADLWSIGTVIYQCLVGKPPFQANSPQDLRMFYEKNRSLMPSIPRETSPYLANLLLGLLQRNQKDRMDFEAFFSHPFLEQGPVKKSCPVPVPMYSGSVSGSSCGSSPSCRFASPPSLPDMQHIQEENLSSPPLGPPNYLQVSKDSASTSSKNSSCDTDDFVLVPHNISSDHSCDMPVGTAGRRASNEFLVCGGQCQPTVSPHSETAPIPVPTQIRNYQRIEQNLTSTASSGTNVHGSPRSAVVRRSNTSPMGFLRPGSCSPVPADTAQTVGRRLSTGSSRPYSPSPLVGTIPEQFSQCCCGHPQGHDSRSRNSSGSPVPQAQSPQSLLSGARLQSAPTLTDIYQNKQKLRKQHSDPVCPSHTGAGYSYSPQPSRPGSLGTSPTKHLGSSPRSSDWFFKTPLPTIIGSPTKTTAPFKIPKTQASSNLLALVTRHGPAEEQSKDGNEPRECAHCLLVQGSERQRAEQQSKAVFGRSVSTGKLSDQQGKTPICRHQGSTDSLNTERPMDIAPAGACGGVLAPPAGTAASSKAVLFTVGSPPHSAAAPTCTHMFLRTRTTSVGPSNSGGSLCAMSGRVCVGSPPGPGFGSSPPGAEAAPSLRYVPYGASPPSLEGLITFEAPELPEETLMEREHTDTLRHLNVMLMFTECVLDLTAMRGGNPELCTSAVSLYQIQESVVVDQISQLSKDWGRVEQLVLYMKAAQLLAASLHLAKAQIKSGKLSPSTAVKQVVKNLNERYKFCITMCKKLTEKLNRFFSDKQRFIDEINSVTAEKLIYNCAVEMVQSAALDEMFQQTEDIVYRYHKAALLLEGLSRILQDPADIENVHKYKCSIERRLSALCHSTATV", "length": 1036 }, "evidence": [ { "id": "F1SDB3", "url": "https://omabrowser.org/oma/group/F1SDB3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QY01-1", "protein_name": "Serine/threonine-protein kinase ULK2", "gene_name": "Ulk2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVVGDFEYCKRDLVGHGAFAVVFRGRHRQKTDWEVAIKSINKKNLSKSQILLGKEIKILKELQHENIVALYDVQELPNSVFLVMEYCNGGDLADYLQAKGTLSEDTIRVFLHQIAAAMRILHSKGIIHRDLKPQNILLSYANRRKSNVSGIRIKIADFGFARYLHSNTMAATLCGSPMYMAPEVIMSQHYDAKADLWSIGTVIYQCLVGKPPFQANSPQDLRMFYEKNRSLMPSIPRETSPYLANLLLGLLQRNQKDRMDFEAFFSHPFLEQVPVKKSCPVPVPVYSGPVPGSSCSSSPSCRFASPPSLPDMQHIQEENLSSPPLGPPNYLQVSKDSASNSSKNSSCDTDDFVLVPHNISSDHSYDMPMGTTARRASNEFFMCGGQCQPTVSPHSETAPIPVPTQVRNYQRIEQNLISTASSGTNPHGSPRSAVVRRSNTSPMGFLRVGSCSPVPGDTVQTGGRRLSTGSSRPYSPSPLVGTIPEQFSQCCCGHPQGHEARSRHSSGSPVPQTQAPQSLLLGARLQSAPTLTDIYQNKQKLRKQHSDPVCPSHAGAGYSYSPQPSRPGSLGTSPTKHTGSSPRNSDWFFKTPLPTIIGSPTKTTAPFKIPKTQASSNLLALVTRHGPAESQSKDGNDPRECSHCLSVQGSERHRSEQQQSKAVFGRSVSTGKLSEQQVKAPLGGHQGSTDSLNTERPMDVAPAGACGVMLALPAGTAASARAVLFTVGSPPHSATAPTCTHMVLRTRTTSVGSSSSGGSLCSASGRVCVGSPPGPGLGSSPPGAEGAPSLRYVPYGASPPSLEGLITFEAPELPEETLMEREHTDTLRHLNMMLMFTECVLDLTAVRGGNPELCTSAVSLYQIQESVVVDQISQLSKDWGRVEQLVLYMKAAQLLAASLHLAKAQVKSGKLSPSMAVKQVVKNLNERYKFCITMCKKLTEKLNRFFSDKQRFIDEINSVTAEKLIYNCAVEMVQSAALDEMFQQTEDIVYRYHKAALLLEGLSKILQDPTDVENVHKYKCSIERRLSALCCSTATV", "length": 1037 }, "evidence": [ { "id": "F1SDB3", "url": "https://omabrowser.org/oma/group/F1SDB3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "autophagosome assembly", "id": "GO:0000045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000045", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "regulation of autophagy", "id": "GO:0010506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010506", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "response to starvation", "id": "GO:0042594", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042594", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "mitophagy", "id": "GO:0000423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000423", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "axon extension", "id": "GO:0048675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048675", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "piecemeal microautophagy of the nucleus", "id": "GO:0034727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034727", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "reticulophagy", "id": "GO:0061709", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061709", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "negative regulation of collateral sprouting", "id": "GO:0048671", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048671", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "phagophore assembly site membrane", "id": "GO:0034045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034045", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" }, { "name": "phagophore assembly site", "id": "GO:0000407", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000407", "evidence": [ { "database": "UniProtKB", "id": "F1SDB3", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 346, "end_pos": 348, "annotation": "n_glycosylation_sequon" }, { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDB3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1038, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDB3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDB3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDB3" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 271, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 346, "end_pos": 348 }, { "start_pos": 417, "end_pos": 419 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDB6-1", "uniprot_ac": "F1SDB6", "uniprot_id": "F1SDB6_PIG", "mass": { "chemical_mass": 30282.0, "monoisotopic_mass": 30282.0 }, "refseq": { "ac": "NP_001230612", "name": "5'-AMP-activated protein kinase subunit beta-2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230612" }, "gene_names": [ { "name": "PRKAB2", "type": "recommended", "evidence": [ { "id": "F1SDB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ] }, { "name": "PRKAB2", "type": "synonym", "evidence": [ { "id": "NP_001230612", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230612" } ] } ], "protein_names": [ { "name": "5'-AMP-activated protein kinase subunit beta-1", "type": "recommended", "evidence": [ { "id": "F1SDB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDB6/entry#names_and_taxonomy" } ] }, { "name": "5'-AMP-activated protein kinase subunit beta-2", "type": "synonym", "evidence": [ { "id": "NP_001230612", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230612" } ] }, { "name": "protein kinase, AMP-activated, beta 2 non-catalytic subunit", "type": "synonym", "evidence": [ { "id": "NP_001230612", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230612" } ] } ], "function": [ { "annotation": "Non-catalytic subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Beta non-catalytic subunit acts as a scaffold on which the AMPK complex assembles, via its C-terminus that bridges alpha (PRKAA1 or PRKAA2) and gamma subunits (PRKAG1, PRKAG2 or PRKAG3).", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6#function" }, { "database": "UniProtKB", "id": "ARBA00025180", "url": "https://www.uniprot.org/uniprotkb/ARBA00025180#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRKAB2", "url": "https://www.uniprot.org/uniprotkb/F1SDB6", "locus": { "chromosome": "4", "start_pos": 100394338, "end_pos": 100378071, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006703", "url": "https://www.ensembl.org/id/ENSSSCG00000006703" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006703", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006703", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02859", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02859", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157793", "url": "https://www.ncbi.nlm.nih.gov/gene/100157793", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032640", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032640", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037256", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037256", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157793", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157793", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HEYKFMV", "url": "https://omabrowser.org/oma/group/HEYKFMV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDB6", "url": "https://www.orthodb.org/?gene=F1SDB6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10343", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10343", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10343:SF92", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10343:SF92", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04739", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04739", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1632852", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-163680", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163680", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-200425", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-200425", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380972", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380972", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5628897", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9931269", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230612", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230612", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDB6-1", "url": "https://www.uniprot.org/uniprotkb/F1SDB6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNTASERVAGERHGAKAARADGAGGHAPGKEHKIMVGSTDDPSLFSLPDSKLPGDKEFVSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI", "length": 272, "header": "tr|F1SDB6-1|F1SDB6_PIG Isoform 1 of 5'-AMP-activated protein kinase subunit beta-1 OS=Sus scrofa OX=9823 GN=PRKAB2 PE=1 SV=1 CANONICAL=F1SDB6-1" }, "isoforms": [ { "isoform_ac": "F1SDB6-1", "url": "https://www.uniprot.org/uniprotkb/F1SDB6/entry#F1SDB6-1", "sequence": { "sequence": "MGNTASERVAGERHGAKAARADGAGGHAPGKEHKIMVGSTDDPSLFSLPDSKLPGDKEFVSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI", "length": 272, "header": "tr|F1SDB6-1|F1SDB6_PIG Isoform 1 of 5'-AMP-activated protein kinase subunit beta-1 OS=Sus scrofa OX=9823 GN=PRKAB2 PE=1 SV=1 CANONICAL=F1SDB6-1" }, "locus": { "chromosome": "4", "start_pos": 100389886, "end_pos": 100378570, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056624.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056624.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033953.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033953.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157793", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157793", "resource": "KEGG Pathway" }, { "id": "R-SSC-1632852", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "resource": "Reactome", "description": "Macroautophagy" }, { "id": "R-SSC-163680", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163680", "resource": "Reactome", "description": "AMPK inhibits chREBP transcriptional activation activity" }, { "id": "R-SSC-200425", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-200425", "resource": "Reactome", "description": "Carnitine shuttle" }, { "id": "R-SSC-380972", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380972", "resource": "Reactome", "description": "Energy dependent regulation of mTOR by LKB1-AMPK" }, { "id": "R-SSC-5628897", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "resource": "Reactome", "description": "TP53 Regulates Metabolic Genes" }, { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" }, { "id": "R-SSC-9931269", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "resource": "Reactome", "description": "AMPK-induced ERAD and lysosome mediated degradation of PD-L1(CD274)" } ], "orthologs": [ { "uniprot_canonical_ac": "O43741-1", "protein_name": "5'-AMP-activated protein kinase subunit beta-2", "gene_name": "PRKAB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNTTSDRVSGERHGAKAARSEGAGGHAPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFVSWQQDLEDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYAFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI", "length": 272 }, "evidence": [ { "id": "F1SDB6", "url": "https://omabrowser.org/oma/group/F1SDB6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6PAM0-1", "protein_name": "5'-AMP-activated protein kinase subunit beta-2", "gene_name": "Prkab2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNTTSERVSGERHGAKAARAEGGGHGPGKEHKIMVGSTDDPSVFSLPDSKLPGDKEFVPWQQDLDDSVKPAQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKDSVMVLSATHRYKKKYVTTLLYKPI", "length": 271 }, "evidence": [ { "id": "F1SDB6", "url": "https://omabrowser.org/oma/group/F1SDB6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "pmid": "" }, { "name": "nucleotide-activated protein kinase complex", "id": "GO:0031588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031588", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "pmid": "" }, { "name": "fatty acid biosynthetic process", "id": "GO:0006633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006633", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "pmid": "" }, { "name": "cellular response to nutrient levels", "id": "GO:0031669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031669", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "pmid": "" }, { "name": "positive regulation of cold-induced thermogenesis", "id": "GO:0120162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120162", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "pmid": "" }, { "name": "AMP-activated protein kinase activity", "id": "GO:0004679", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004679", "evidence": [ { "database": "UniProtKB", "id": "F1SDB6", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDB6" }, { "id": "SM01010", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Association with the SNF1 complex (ASC)", "eco_id": "ECO_0000259", "start_pos": 182, "end_pos": 272, "start_aa": "Ser", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 222, "end_pos": 224 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDB9-1", "uniprot_ac": "F1SDB9", "uniprot_id": "F1SDB9_PIG", "mass": { "chemical_mass": 35089.0, "monoisotopic_mass": 35089.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SDB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDB9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SDB9", "url": "https://www.uniprot.org/uniprotkb/F1SDB9#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDB9", "url": "https://www.uniprot.org/uniprotkb/F1SDB9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SDB9", "locus": {} } ], "crossref": [ { "id": "F1SDB9", "url": "https://alphafold.ebi.ac.uk/entry/F1SDB9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033862", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033862", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15231", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15231", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26452", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26452", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SDB9", "url": "https://www.uniprot.org/uniprotkb/F1SDB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDB9-1", "url": "https://www.uniprot.org/uniprotkb/F1SDB9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VTPLEMNNQTDVTELIFLGFSNHPNLQGLFFLVFLVIYLITLLGNVLIIMATRISSALHTPMYYFLGNLSFLDICYTSTTIPVMLVNFFREKKTISYRGCLSQIFFLVTEAGTECVLLAAMAYDRYVAICHPLQYPVLMGVKVCVCLVTGSWLCGLVNSVTHTVLAATLTLCGPNQISHFLCDVPLLLKLSCSDTSLNEFVLHVASATIGLSPCLLTAVSYILIISAVLRIPSAQGRSKAFSTCASHLTVVIVFYGTANFNYDRPREGYSLDIDILVSVLFCVMTPMLNPIIYSLRNKEVKYALRKLTAGSPSYTLPI", "length": 318, "header": "tr|F1SDB9-1|F1SDB9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SDB9-1" }, "isoforms": [ { "isoform_ac": "F1SDB9-1", "url": "https://www.uniprot.org/uniprotkb/F1SDB9/entry#F1SDB9-1", "sequence": { "sequence": "VTPLEMNNQTDVTELIFLGFSNHPNLQGLFFLVFLVIYLITLLGNVLIIMATRISSALHTPMYYFLGNLSFLDICYTSTTIPVMLVNFFREKKTISYRGCLSQIFFLVTEAGTECVLLAAMAYDRYVAICHPLQYPVLMGVKVCVCLVTGSWLCGLVNSVTHTVLAATLTLCGPNQISHFLCDVPLLLKLSCSDTSLNEFVLHVASATIGLSPCLLTAVSYILIISAVLRIPSAQGRSKAFSTCASHLTVVIVFYGTANFNYDRPREGYSLDIDILVSVLFCVMTPMLNPIIYSLRNKEVKYALRKLTAGSPSYTLPI", "length": 318, "header": "tr|F1SDB9-1|F1SDB9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SDB9-1" }, "locus": { "chromosome": "4", "start_pos": 100164267, "end_pos": 100143130, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007339.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007339.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007144.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007144.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDB9", "url": "https://www.uniprot.org/uniprotkb/F1SDB9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SDB9", "url": "https://www.uniprot.org/uniprotkb/F1SDB9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SDB9", "url": "https://www.uniprot.org/uniprotkb/F1SDB9" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SDB9", "url": "https://www.uniprot.org/uniprotkb/F1SDB9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SDB9", "url": "https://www.uniprot.org/uniprotkb/F1SDB9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDB9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDB9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDB9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDB9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 293, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 68, "end_pos": 70 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDC6-1", "uniprot_ac": "F1SDC6", "uniprot_id": "F1SDC6_PIG", "mass": { "chemical_mass": 60257.0, "monoisotopic_mass": 60257.0 }, "refseq": {}, "gene_names": [ { "name": "SLC47A2", "type": "recommended", "evidence": [ { "id": "F1SDC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ] } ], "protein_names": [ { "name": "Multidrug and toxin extrusion protein", "type": "recommended", "evidence": [ { "id": "F1SDC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDC6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC47A2", "url": "https://www.uniprot.org/uniprotkb/F1SDC6", "locus": { "chromosome": "12", "start_pos": 59935894, "end_pos": 59920770, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018042", "url": "https://www.ensembl.org/id/ENSSSCG00000018042" } ] } } ], "crossref": [ { "id": "ENSSSCG00000018042", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018042", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13132", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13132", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525483", "url": "https://www.ncbi.nlm.nih.gov/gene/100525483", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002528", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002528", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045069", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045069", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525483", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525483", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EFWILLK", "url": "https://omabrowser.org/oma/group/EFWILLK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDC6", "url": "https://www.orthodb.org/?gene=F1SDC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01554", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01554", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-549127", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-549127", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDC6-1", "url": "https://www.uniprot.org/uniprotkb/F1SDC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGLQDTVPPGRGSRCPALRRLVPVGFGAEARILFVLSGPLFLFQMLNFLIYVVSSVFCGHLGKVELAAVTLSVAFVNVCGVSIGFGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTEHILLLFRQDPAVSRLAQDYVQIFIPALPANFLYCLLAKYLQNQGVVWPQVLSGIVGNCVNGLANYILVSTLGQGVRGSAYANTISQLMQTLFLLLYIVLRKLHVDTWGGWSCQCLQDWGPFFSLAVPSMLMTCIEWWAYEIGSFLMGLLSVLDLSAQAIIYEVATVTYMIPMGLSIAVCVRVGTALGAADTVQAKRSAVSGMLCTVGAAMVVGALLSILRNKLGHIFTHDEEVVALVNKALPLYIVFHLFEATCCVYGGVLRGTGRQAFGAIVNAIMYYAVGLPLGIVLTFVVRMGILGLWLGMLACALLAAVAFVTYTARMDWKQAAEEAQKNVGLPPRSTESTAPRPGPEKVVTSSVATGSPPGVTLTTYSRPECHLALSGTPEAAQALPAPSSRLSATQLALRRGAALGVAVATLLAGLLIRVLIARP", "length": 565, "header": "tr|F1SDC6-1|F1SDC6_PIG Isoform 1 of Multidrug and toxin extrusion protein OS=Sus scrofa OX=9823 GN=SLC47A2 PE=3 SV=2 CANONICAL=F1SDC6-1" }, "isoforms": [ { "isoform_ac": "F1SDC6-1", "url": "https://www.uniprot.org/uniprotkb/F1SDC6/entry#F1SDC6-1", "sequence": { "sequence": "MDGLQDTVPPGRGSRCPALRRLVPVGFGAEARILFVLSGPLFLFQMLNFLIYVVSSVFCGHLGKVELAAVTLSVAFVNVCGVSIGFGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTEHILLLFRQDPAVSRLAQDYVQIFIPALPANFLYCLLAKYLQNQGVVWPQVLSGIVGNCVNGLANYILVSTLGQGVRGSAYANTISQLMQTLFLLLYIVLRKLHVDTWGGWSCQCLQDWGPFFSLAVPSMLMTCIEWWAYEIGSFLMGLLSVLDLSAQAIIYEVATVTYMIPMGLSIAVCVRVGTALGAADTVQAKRSAVSGMLCTVGAAMVVGALLSILRNKLGHIFTHDEEVVALVNKALPLYIVFHLFEATCCVYGGVLRGTGRQAFGAIVNAIMYYAVGLPLGIVLTFVVRMGILGLWLGMLACALLAAVAFVTYTARMDWKQAAEEAQKNVGLPPRSTESTAPRPGPEKVVTSSVATGSPPGVTLTTYSRPECHLALSGTPEAAQALPAPSSRLSATQLALRRGAALGVAVATLLAGLLIRVLIARP", "length": 565, "header": "tr|F1SDC6-1|F1SDC6_PIG Isoform 1 of Multidrug and toxin extrusion protein OS=Sus scrofa OX=9823 GN=SLC47A2 PE=3 SV=2 CANONICAL=F1SDC6-1" }, "locus": { "chromosome": "12", "start_pos": 59935572, "end_pos": 59920826, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019637.3", "url": "https://www.ensembl.org/id/ENSSSCT00000019637.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019117.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019117.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525483", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525483", "resource": "KEGG Pathway" }, { "id": "R-SSC-549127", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-549127", "resource": "Reactome", "description": "SLC-mediated transport of organic cations" } ], "orthologs": [ { "uniprot_canonical_ac": "Q86VL8-1", "protein_name": "Multidrug and toxin extrusion protein 2", "gene_name": "SLC47A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDSLQDTVALDHGGCCPALSRLVPRGFGTEMWTLFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASVTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPDVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQGWLKGQEEESPFQTPGLSILHPSHSHLSRASFHLFQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLLSVVDLSAQAVIYEVATVTYMIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLISILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVFEAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLGILLTFVVRMRIMGLWLGMLACVFLATAAFVAYTARLDWKLAAEEAKKHSGRQQQQRAESTATRPGPEKAVLSSVATGSSPGITLTTYSRSECHVDFFRTPEEAHALSAPTSRLSVKQLVIRRGAALGAASATLMVGLTVRILATRH", "length": 602 }, "evidence": [ { "id": "F1SDC6", "url": "https://omabrowser.org/oma/group/F1SDC6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "xenobiotic transmembrane transporter activity", "id": "GO:0042910", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042910", "evidence": [ { "database": "UniProtKB", "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ], "pmid": "" }, { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ], "pmid": "" }, { "name": "polyspecific organic cation:proton antiporter activity", "id": "GO:0140968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140968", "evidence": [ { "database": "UniProtKB", "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "organic cation transport", "id": "GO:0015695", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015695", "evidence": [ { "database": "UniProtKB", "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ], "pmid": "" }, { "name": "xenobiotic detoxification by transmembrane export across the plasma membrane", "id": "GO:1990961", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990961", "evidence": [ { "database": "UniProtKB", "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SDC6", "url": "https://www.uniprot.org/uniprotkb/F1SDC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDE5-1", "uniprot_ac": "F1SDE5", "uniprot_id": "F1SDE5_PIG", "mass": { "chemical_mass": 87862.0, "monoisotopic_mass": 87862.0 }, "refseq": { "ac": "XP_003132075", "name": "zinc finger protein 287 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132075" }, "gene_names": [ { "name": "ZNF287", "type": "recommended", "evidence": [ { "id": "F1SDE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ] }, { "name": "ZNF287", "type": "synonym", "evidence": [ { "id": "XP_003132075", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132075" } ] } ], "protein_names": [ { "name": "Zinc finger protein 287", "type": "recommended", "evidence": [ { "id": "F1SDE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDE5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 287 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003132075", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132075" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF287", "url": "https://www.uniprot.org/uniprotkb/F1SDE5", "locus": { "chromosome": "12", "start_pos": 59053204, "end_pos": 59038774, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018031", "url": "https://www.ensembl.org/id/ENSSSCG00000018031" } ] } } ], "crossref": [ { "id": "ENSSSCG00000018031", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018031", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524396", "url": "https://www.ncbi.nlm.nih.gov/gene/100524396", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524396", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524396", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KTEAQEC", "url": "https://omabrowser.org/oma/group/KTEAQEC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDE5", "url": "https://www.orthodb.org/?gene=F1SDE5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399:SF54", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399:SF54", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132075", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132075", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDE5-1", "url": "https://www.uniprot.org/uniprotkb/F1SDE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSPGKRTASSSRAQVLLTWKPDKAQGGPRNAEKEILAARLLRDTETCRQNFRNFPYPDLAGPRKALNQLRELCLKWLRPEIHSKEQILELLILEQFLTILPGEVRTWVKSQYPRSSEEVVTLVEDLTQILEEEAASQNSALSQETPEEDSKGRQAFQAGWLNDLVTKESMTFKDVAVDITQEDWELMRPVQKELYKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEILEGPSPEWETEAQEGPPAENISKLTKDETKPIKLEEPYDYENTMEGQATGTFRRIPTKRDFNLKSVLSQEDDPTEEYFSKYSIYTSNFEKHPNLIIQFGTQSDDKTFVYDERAAFNHVSYGIVHRKIYPGEKPYKCNVCGKKFRKYPSLIKHQSSHAKEKSYECEECGKEFRHVSSLIAHQRMHTGEKPYECHQCGKAFSQRAHLTIHQRIHTGEKPYRCDDCGKDFSQRAHLTIHQRTHTGEKPYRCLECGKTFSHSSSLINHQRVHTGEKPYICNECGKTFSQSTHLLQHQKIHTGKKPYKCNECWKVFSQSTYLIRHQRIHSGEKCYKCNECGKAFAHSSTLIQHQTTHTGEKSYICNICGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIHNGEKPFKCNICGKAYRQGANLTQHQRIHTGEKPYKCNECGKAFIYSSSLNQHQRTHTGERPYKCNECDKDFSQRTCLIQHQRIHTGEKPYACRVCGKTFTQSTNLIQHQRVHTGGRHRN", "length": 760, "header": "tr|F1SDE5-1|F1SDE5_PIG Isoform 1 of Zinc finger protein 287 OS=Sus scrofa OX=9823 GN=ZNF287 PE=3 SV=2 CANONICAL=F1SDE5-1" }, "isoforms": [ { "isoform_ac": "F1SDE5-1", "url": "https://www.uniprot.org/uniprotkb/F1SDE5/entry#F1SDE5-1", "sequence": { "sequence": "MFSPGKRTASSSRAQVLLTWKPDKAQGGPRNAEKEILAARLLRDTETCRQNFRNFPYPDLAGPRKALNQLRELCLKWLRPEIHSKEQILELLILEQFLTILPGEVRTWVKSQYPRSSEEVVTLVEDLTQILEEEAASQNSALSQETPEEDSKGRQAFQAGWLNDLVTKESMTFKDVAVDITQEDWELMRPVQKELYKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEILEGPSPEWETEAQEGPPAENISKLTKDETKPIKLEEPYDYENTMEGQATGTFRRIPTKRDFNLKSVLSQEDDPTEEYFSKYSIYTSNFEKHPNLIIQFGTQSDDKTFVYDERAAFNHVSYGIVHRKIYPGEKPYKCNVCGKKFRKYPSLIKHQSSHAKEKSYECEECGKEFRHVSSLIAHQRMHTGEKPYECHQCGKAFSQRAHLTIHQRIHTGEKPYRCDDCGKDFSQRAHLTIHQRTHTGEKPYRCLECGKTFSHSSSLINHQRVHTGEKPYICNECGKTFSQSTHLLQHQKIHTGKKPYKCNECWKVFSQSTYLIRHQRIHSGEKCYKCNECGKAFAHSSTLIQHQTTHTGEKSYICNICGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIHNGEKPFKCNICGKAYRQGANLTQHQRIHTGEKPYKCNECGKAFIYSSSLNQHQRTHTGERPYKCNECDKDFSQRTCLIQHQRIHTGEKPYACRVCGKTFTQSTNLIQHQRVHTGGRHRN", "length": 760, "header": "tr|F1SDE5-1|F1SDE5_PIG Isoform 1 of Zinc finger protein 287 OS=Sus scrofa OX=9823 GN=ZNF287 PE=3 SV=2 CANONICAL=F1SDE5-1" }, "locus": { "chromosome": "12", "start_pos": 59050098, "end_pos": 59039999, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019626.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019626.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019106.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019106.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524396", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524396", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A516-1", "protein_name": "Zinc finger protein 287", "gene_name": "Zfp287", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLASRKKVANSSRSQVLLMWKPDKIQNGPCNAEKQILTSRLLRDAETCRQNFRNFPYPDVAGPRKALSQLRELCLKWLRPEVHSKEQILELLVLEQFLSILPGEVRTWVNSQYPENSEEVVALVEDLAQILEEEAPQNSALPQEIPEEDPKHALETGWLNDLVTKESVTFNDVAVDITQEDWELMRPVEKELYKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEIVEGPSPEWETKAQACSPLKDFPKLKQDGTQTIKLEESCDCEDGLERQPAYAFRKIHIDEDDFSLKSELSQEDPTEECLSKYDLYRDNFEKHTNLIIQFDTQSDSKTLLYNESKPTFTNVSSGGVVHGKILPGDKPYSCNVCGKKFRKYPSLLAHRNNHAKDKSYECEECGKEFKHLSSLIAHQRMHTGEKPYECHQCGKAFSQRAHLTIHQRIHTGEKPYKCNDCGKDFSQRAHLTIHQRTHTGEKPYKCLECSKTFSHSSSLINHQRVHTGEKPYICNECGKTFSQSTHLLQHQKIHTGKKPYKCNECWKVFSQSTYLIRHQRIHSGEKCYKCTECGKAFAHSSTLIQHQTTHTGEKSYICNVCGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIHNGEKPFKCNTCGKAYRQGANLTQHQRVHTGEKPYKCHHCGKAFIYSSSLNQHRRTHTGERPYKCTHCNKDFSQRTCLIQHQRIHTGERPYGCRICGKSFTQSTNLIQHQRVHMGARHRNGQI", "length": 762 }, "evidence": [ { "id": "F1SDE5", "url": "https://omabrowser.org/oma/group/F1SDE5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9EQB9-1", "protein_name": "Zinc finger protein 287", "gene_name": "Znf287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSLSQVLLMWKPGKIQKGPCSAEQQTLTSRLLRDTETCRRNFRNFPYPDVAGPRKALCQLRELCLKWLRPEVHSKEQILELLVLEQFLSILPGEVRTWVNSQYPESSEEVVALVEDLTQILEEEEAPQSSALPQDTPEDDPNHDPNPASQAGWLSDVVTKDLVTFNDVAVDITQEDWELMPPVQKELYKTVTLQNYWNMVSLGLTVYRPTVIPVLEEPWMVIKEIVEGPNPEWEPKAQAQCPAKHLPELKQDGTQTVKLEDSYDDDNDDSVESPPVCAFGMIHIDEEGFSVKSELSQEDPTEEYLSKCDIYRVTFEKHTNLGVQFDTQSDDKTALYNESKPPFSNASSGGAVRGKILPGDKPYSCNVCGKQFRKYPSLLAHRENHAKEKAYECEECGKEFKHLSSLIAHQRMHTGEKPYECHQCGKAFSQRAHLTIHQRIHTGEKPYKCEDCGKDFSQRAHLTIHQRTHTGEKPYKCLECSKTFSHSSSLINHQRVHTGEKPYICNECGKTFSQSTHLLQHQKIHTGKKPYKCNECWKVFSQSTYLIRHQRIHSGEKCYKCTACGKAFAHSSTLIQHQTTHTGEKSYICNVCGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIHNGEKPFKCNTCGKAYRQGANLTQHQRVHTGEKPYKCHHCGKAFIYSSSLNQHRRTHTGERPYKCSHCNKDFSQRTCLIQHQRIHTGEKPYGCRICGKAFTQSTNLIQHQRVHTGARHRN", "length": 759 }, "evidence": [ { "id": "F1SDE5", "url": "https://omabrowser.org/oma/group/F1SDE5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HBT7-1", "protein_name": "Zinc finger protein 287", "gene_name": "ZNF287", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLASSKRMNSSSRSQILLRWKSDKAQSGPYNVEKEILTSRFLRDTETCRQNFRNFPYPDLAGPRKALSQLRELCLKWLRPEIHSKEQILELLVLEQFLTILPGEVRTWVKSQYPESSEEAVTLVEDLTQILEEEAPQNSTLSQDTPEEDPRGKHAFQTGWLNDLVTKESMTFKDVAVDITQEDWELMRPVQKELYKTVTLQNYWNMVSLGLTVYRPTVIPILEEPWMVIKEILEGPSPEWETKAQACTPVEDMSKLTKEETHTIKLEDSYDYDDRLERRGKGGFWKIHTDERGFSLKSVLSQEYDPTEECLSKYDIYRNNFEKHSNLIVQFDTQLDNKTSVYNEGRATFNHVSYGIVHRKILPGEKPYKCNVCGKKFRKYPSLLKHQSTHAKEKSYECEECGKEFRHISSLIAHQRMHTGEKPYECHQCGKAFSQRAHLTIHQRIHTGEKPYKCDDCGKDFSQRAHLTIHQRTHTGEKPYKCLECGKTFSHSSSLINHQRVHTGEKPYICNECGKTFSQSTHLLQHQKIHTGKKPYKCNECWKVFSQSTYLIRHQRIHSGEKCYKCNECGKAFAHSSTLIQHQTTHTGEKSYICNICGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQRIHNGEKPFKCNICGKAYRQGANLTQHQRIHTGEKPYKCNECGKAFIYSSSLNQHQRTHTGERPYKCNECDKDFSQRTCLIQHQRIHTGEKPYACRICGKTFTQSTNLIQHQRVHTGAKHRN", "length": 761 }, "evidence": [ { "id": "F1SDE5", "url": "https://omabrowser.org/oma/group/F1SDE5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SDE5", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 605, "end_pos": 607, "annotation": "n_glycosylation_sequon" }, { "start_pos": 661, "end_pos": 663, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 367, "end_pos": 394, "start_aa": "Tyr", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 171, "end_pos": 239, "start_aa": "Met", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDE5" }, { "id": "PS50804", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50804" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SCAN box", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 127, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 253, "end_pos": 255 }, { "start_pos": 605, "end_pos": 607 }, { "start_pos": 661, "end_pos": 663 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDE8-1", "uniprot_ac": "F1SDE8", "uniprot_id": "F1SDE8_PIG", "mass": { "chemical_mass": 56473.0, "monoisotopic_mass": 56473.0 }, "refseq": { "ac": "XP_020923552", "name": "tektin-3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923552" }, "gene_names": [ { "name": "TEKT3", "type": "recommended", "evidence": [ { "id": "F1SDE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ] }, { "name": "TEKT3", "type": "synonym", "evidence": [ { "id": "XP_020923552", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923552" } ] } ], "protein_names": [ { "name": "Tektin", "type": "recommended", "evidence": [ { "id": "F1SDE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDE8/entry#names_and_taxonomy" } ] }, { "name": "tektin-3", "type": "synonym", "evidence": [ { "id": "XP_020923552", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923552" } ] } ], "function": [ { "annotation": "Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia and flagellar axoneme. Forms filamentous polymers in the walls of ciliary and flagellar microtubules. Required for normal sperm mobility.", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8#function" }, { "database": "UniProtKB", "id": "RU367040", "url": "https://www.uniprot.org/uniprotkb/RU367040#function" }, { "database": "UniProtKB", "id": "ARBA00045324", "url": "https://www.uniprot.org/uniprotkb/ARBA00045324#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEKT3", "url": "https://www.uniprot.org/uniprotkb/F1SDE8", "locus": { "chromosome": "12", "start_pos": 58734177, "end_pos": 58789493, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018028", "url": "https://www.ensembl.org/id/ENSSSCG00000018028" } ] } } ], "crossref": [ { "id": "ENSSSCG00000018028", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018028", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522896", "url": "https://www.ncbi.nlm.nih.gov/gene/100522896", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "9CPC", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CPC&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR000435", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000435", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048256", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048256", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522896", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522896", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CMEPISG", "url": "https://omabrowser.org/oma/group/CMEPISG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDE8", "url": "https://www.orthodb.org/?gene=F1SDE8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19960", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19960", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19960:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19960:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00009cpc", "url": "https://www.rcsb.org/structure/pdb_00009cpc", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CPC", "url": "https://www.rcsb.org/structure/9CPC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF03148", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03148", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020923552", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923552", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SDE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELLGSTLTATYAHPRPTPTSLLPAISTMASSYRDRFPHYNLTHSLSLPWRPSTYYKAASNWPALDPYCTRAQSVSQSAMLPFVSNRTTLFTRYTPDDWYRSNLTNYLESNTSRHNSERLRVDTSRLIQDKYQQTRKTQADSTQNLGERVNDIGFWKSEITHELDAMIGETNELTDVKKKLERALMETEAPLQVARECLFHREKRMGIDLVHDEVETELLTEVDIILCCQERMKLHLDKAIAQLAASRASQHELEKDLSDKQAAYRIDDKCHHLRNTSDGISYFRGVERVDATVSVPESWAKFTDDNILRSQSERAASVKLRDDIQNLLVVTANEMWNQFNKVNLAFTNRIAETADAKNKMQIHLAKTLQEIFQTETTIDSIKKAIRDKAAFLKVAQTRLDERTRRPNIELCRDMAQLRLVNEVYEVDDTIQTLQQRLRDAEDTLQSLVHTKATLEHDLAVKANSLYIDQEKCMTMRKSFPSTMRLVGFC", "length": 490, "header": "tr|F1SDE8-1|F1SDE8_PIG Isoform 1 of Tektin OS=Sus scrofa OX=9823 GN=TEKT3 PE=1 SV=2 CANONICAL=F1SDE8-1" }, "isoforms": [ { "isoform_ac": "F1SDE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SDE8/entry#F1SDE8-1", "sequence": { "sequence": "MELLGSTLTATYAHPRPTPTSLLPAISTMASSYRDRFPHYNLTHSLSLPWRPSTYYKAASNWPALDPYCTRAQSVSQSAMLPFVSNRTTLFTRYTPDDWYRSNLTNYLESNTSRHNSERLRVDTSRLIQDKYQQTRKTQADSTQNLGERVNDIGFWKSEITHELDAMIGETNELTDVKKKLERALMETEAPLQVARECLFHREKRMGIDLVHDEVETELLTEVDIILCCQERMKLHLDKAIAQLAASRASQHELEKDLSDKQAAYRIDDKCHHLRNTSDGISYFRGVERVDATVSVPESWAKFTDDNILRSQSERAASVKLRDDIQNLLVVTANEMWNQFNKVNLAFTNRIAETADAKNKMQIHLAKTLQEIFQTETTIDSIKKAIRDKAAFLKVAQTRLDERTRRPNIELCRDMAQLRLVNEVYEVDDTIQTLQQRLRDAEDTLQSLVHTKATLEHDLAVKANSLYIDQEKCMTMRKSFPSTMRLVGFC", "length": 490, "header": "tr|F1SDE8-1|F1SDE8_PIG Isoform 1 of Tektin OS=Sus scrofa OX=9823 GN=TEKT3 PE=1 SV=2 CANONICAL=F1SDE8-1" }, "locus": { "chromosome": "12", "start_pos": 58762605, "end_pos": 58734406, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019623.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019623.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019103.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019103.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 18, "start_aa": "Thr", "end_pos": 18, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr18", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural diversity of axonemes across mammalian motile cilia.", "journal": "Nature", "date": "2025", "authors": "Leung Miguel Ricardo, Sun Chen, Zeng Jianwei, Anderson Jacob R, Niu Qingwei, Huang Wei, Noteborn Willem E M, Brown Alan, Zeev-Ben-Mordehai Tzviya, Zhang Rui", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "reference": [ { "type": "PubMed", "id": "39743588", "url": "https://glygen.org/publication/PubMed/39743588" } ] } ], "pathway": [ { "id": "ssc:100522896", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522896", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BZ49-1", "protein_name": "Tektin", "gene_name": "TEKT3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MELVGSPLSAAHAHVRSTPTNLLPAISTMTSSYKNRFPYYPLPQTLSLPWLPSSYYRTATNHPMLAPFSSGSQGLTPSKMLPFVSNRTSLFTRYTPDDWYRSNLTNYRESETSRHNSESLRVDTSRLIQDKHQQTKKTQMESTKNLGERVNDIEFWKSELCHELDEMIGETNALTDMKKRLERALAETEAPLQVAQECLLHREKRMGIDLVHDDVEKQLFTEVDVIRSCQERMQRYLDRAKAQLASNRAAQHEVEKDLADKQTARRIDGKCHHLRNTSDGISYYRGVERVDATISVPDSWAKFTDDNILRSQSERAASAKLREDIENLLVVTANEMWNQFNAVNVAFTNRIAETADAKSKIQTHLAKTLQEIFQIEMSIESIRKAIRDKVPPLKVAQTRLDERTRRPNVELCRDSTQLRLVNEVHELDETIQSLQQRLRDAEDTLQILVRAKAVLEHDLAVKANSLFIDQEKCMGMRRNFPCTARLVGFV", "length": 490 }, "evidence": [ { "id": "F1SDE8", "url": "https://omabrowser.org/oma/group/F1SDE8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E7F7G5-1", "protein_name": "Tektin", "gene_name": "tekt3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MELIGSTQMATYTRPKTSHFLPAISTTASSYRSHQPPLSLNQNSNMPWRTNSYYRSGSAIPTLSALQRDNLELVRAKTMFYPSNRTALSTRYMPEDWYKSNQSNYRESESSRNSAERLRRDTIRLIQDKEQLTRRTQDTTSKNIGERLNDISFWRSEINHEIDNMVTEISALSDVKRRLERALAETEGPLQVAQECLFHREKRMSIDLVHDDVEIDLIKEVDVIKSCQERMRRHLERAVAQLAANRAAQHELERDLSDKVTAQRIDDRCHHLRNTSDGISYYRGIDRLDPSISLPDSWSKFTDDNILHSQSERAASHKLRDEIEILLNATSNEMWNQFNSVNVSFTNRISETADTKNNLQTHLAKTLQEIYQTEMLIEALKKAIRDKENPLKVAQTRLEERTRRPNVELCRDNPHHRLITEVREIEDTIHKLRDRLMEAENTLQTLVKTKITLEHDLSIKANSLFLDQEKCMSMRKSFPSTPRLVGFT", "length": 488 }, "evidence": [ { "id": "F1SDE8", "url": "https://omabrowser.org/oma/group/F1SDE8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1MX07-1", "protein_name": "Tektin", "gene_name": "TEKT3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MELLGSTLTATYAHPSPTPTNFLPAISTMASTYRDRFPHYNLTHSLSLPWRPSTYYKAASNWPTLDPYCTRSQRVSESTMLPFVSNRTTLFTRYTPDDWYRSNLTNFQESNTSRHNSERLRVDTSRLIQDKYQQTRKTQADSTQNLGERVNDIGFWKSEIIHELDAMIGETNKLTDIKKRLERALMETEAPLQVARECLFHREKRMGIDLVHDEVEKELLTEVDIILCCQERMKLYLDKAIAQLAANRAAQHELEKDLSDKQSAYRIDDKCHHLRNTSDGVSYFRGVERVDATVSVPESWAKFTDDNILRSQSERAASAKLRDDIQNVLVVTANEMWNQFNKVNLAFTNRIAETADAKNKIQTHLAKTLQEIFQTEMTIESIKKAIVEKSAFLKVAQTRLDERTRRPNIELCRDMAQLRLVNEVYEVDDTIQTLQQRLRDAEDTLQSLAHTKATLEHDLAVKANSLYIDQDKCMSMRRSFPSTLRLVGFC", "length": 490 }, "evidence": [ { "id": "F1SDE8", "url": "https://omabrowser.org/oma/group/F1SDE8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4V8G8-1", "protein_name": "Tektin-3", "gene_name": "Tekt3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPLGSTLTATYAHPQPAATNFLPAIGTLTSSYRNRFPHRNLTHSLSLPWRPSTYYKTAYNYPTLAPLSSTSQSVCESTMLPFVSNRTTLFTRYTPDDWYRSTLVGFQESNCSRHNSERLRVDTSRLIQDKYQQIRKTQADSTQNLGERVNDIAFWKSEIIHELDEMIGETNALTDIKRRLERGLIETDAPLQVARECLFHREKRMGIDLVHDEAEKELLTEVETVLCCQERMRRHLDKAIAQLASDRSAQHELEKDLSDKQAALRIDDKCKHLRNTSQGVSYFRGVENVDATVSVPESWAKFTDDNVLRSQSERAASAKLREDTENLLIVIANEMWNQFNKVNVAFTNRIAETVDAKNKIHIHLSKTLQEIFQTEMAIESIRKAIKEKSAFLKVAQTRLDERTRRPNIELCRDIAQLRLVNEVYEVDETIQTLQQRLRDSEDTLQSLAHTKATLEHDLAVKANTLYIDQEKCMSMRNSYPSTLRLVGFC", "length": 490 }, "evidence": [ { "id": "F1SDE8", "url": "https://omabrowser.org/oma/group/F1SDE8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6X6Z7-1", "protein_name": "Tektin-3", "gene_name": "Tekt3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELLGSTLTATYAHPPPASASFLPAIGTITSSYKDRFPHRNLTHSLSLPWRPNTYYKTAYNYPTLAPYSSRSQRVCESTMLPFVSNRTTFFTRYTPDDWYRSNLVSFQESNSSRHNSERLRVDTSRLIQDKYQQIRKTQAHSTQNLGERVNDLAFWKSEITHELDEMIGETNALTDIKRRLERGLIETEGPLQVSRECLFHREKRMGIDLVHDEAEKELLAEVDTILCCQERMRQHLDKANAQLASDRSAQHELEKDLSDKQAALRIDDKCQHLRNTSEGVSYFRGVERVDATVSVPETWAKFTDDNVLRSQSERAASAKLREETENLLIVTANEMWNQFNKVNLAFTNRIAETVDAKNKIHTHLTKTLQEIFQIEMTIESIKKAIKEKSAFLKVAQTRLDERTRRPNVELCRDMAQLRLVNEVYEVDETIQTLQQRLRDSEDTLQSLAHTKATLEHDLAVKANTLYIDQEKCMSMRNSYPSTLRLVGYC", "length": 490 }, "evidence": [ { "id": "F1SDE8", "url": "https://omabrowser.org/oma/group/F1SDE8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8I0K9-1", "protein_name": "Tektin", "gene_name": "Dmel\\CG32820", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLCWANEDHYLSQRYPNPQQKAPETLKNLLLRSSVPIVGAPNPEKDSHFAGTMAPLKGQEVLKFHKHSYLENRIFDHRLVKDNLLDKWPTADMNEYNERKDHRNLMESYPWSQAGAPPCMEPVMGPSIPPRVGAAYETPTKHPWRPAMAYELIQVKHMPEQPVTNQLTKQCFLPKGMKTDGMIFPNLVTGFDRNPQHAARAALYTRYTSNEWYNNNMTKYSESNMNRNLSERMRNDAVRLMRETDEKATSGQRDAGRRLGERITDLTFWRNELNAELEKLIAEMSDINELQRQCGKALLDLEIPLHIAQECLFHRESRQGTEKVHDIVEKALLVEINNLRNSRDRLGGLHEKISKQALDCRGAQHLLEDDVSHKESSLGIDSMCHQLNNHSRGITYYGGIEKFDPSVSTQESWAQASSEHVRRSQAERAKLSQLRSDAQSVVNSVATTVWDFWSNTNNAFDRRSQEMAEAKNRVQLHLQKVQQELFDMEKHLFLLQKAIQDKSGPLKVAQTRLEARSHREGVELCKDHAQDRLVQEVQDIQGAVETLHHKLMEAEATHQGLLKTRCTLEVDLRNKVNALFIDREKCMSLRRSFPVSNLIKY", "length": 601 }, "evidence": [ { "id": "F1SDE8", "url": "https://omabrowser.org/oma/group/F1SDE8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9BXF9-1", "protein_name": "Tektin-3", "gene_name": "TEKT3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERVGCTLTTTYAHPRPTPTNFLPAISTMASSYRDRFPHSNLTHSLSLPWRPSTYYKVASNSPSVAPYCTRSQRVSENTMLPFVSNRTTFFTRYTPDDWYRSNLTNYQESNTSRHNSEKLRVDTSRLIQDKYQQTRKTQADTTQNLGERVNDIGFWKSEIIHELDEMIGETNALTDVKKRLERALMETEAPLQVARECLFHREKRMGIDLVHDEVEAQLLTEVDTILCCQERMKLHLDKAIAQLAANRASQHELEKDLSDKQTAYRIDDKCHHLRNTSDGVGYFRGVERVDATVSVPESWAKFTDDNILRSQSERAASAKLRDDIENLLVVTANEMWNQFNKVNLSFTNRIAETADAKNKIQTHLAKTLQEIFQTEMTIESIKKAIKDKTAFLKVAQTRLDERTRRPNIELCRDMAQLRLVNEVHEVDDTIQTLQQRLRDAEDTLQSLVHIKATLEYDLAVKANSLYIDQEKCMSMRKSYPNTLRLVGFC", "length": 490 }, "evidence": [ { "id": "F1SDE8", "url": "https://omabrowser.org/oma/group/F1SDE8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "sperm end piece", "id": "GO:0097229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097229", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" }, { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" }, { "name": "outer acrosomal membrane", "id": "GO:0002081", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002081", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" }, { "name": "axonemal A tubule inner sheath", "id": "GO:0160111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160111", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cilium movement involved in cell motility", "id": "GO:0060294", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060294", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" }, { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SDE8", "url": "https://www.uniprot.org/uniprotkb/F1SDE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 18 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 111, "end_pos": 113 }, { "start_pos": 276, "end_pos": 278 }, { "start_pos": 41, "end_pos": 43 }, { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDG0-1", "uniprot_ac": "F1SDG0", "uniprot_id": "F1SDG0_PIG", "mass": { "chemical_mass": 44386.0, "monoisotopic_mass": 44386.0 }, "refseq": { "ac": "XP_001926524", "name": "splicing factor 3B subunit 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926524" }, "gene_names": [ { "name": "SF3B4", "type": "recommended", "evidence": [ { "id": "F1SDG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ] }, { "name": "SF3B4", "type": "synonym", "evidence": [ { "id": "XP_001926524", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926524" } ] } ], "protein_names": [ { "name": "Splicing factor 3B subunit 4", "type": "recommended", "evidence": [ { "id": "F1SDG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDG0/entry#names_and_taxonomy" } ] }, { "name": "splicing factor 3B subunit 4", "type": "synonym", "evidence": [ { "id": "XP_001926524", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926524" } ] } ], "function": [ { "annotation": "Component of the 17S U2 SnRNP complex of the spliceosome, a large ribonucleoprotein complex that removes introns from transcribed pre-mRNAs. The 17S U2 SnRNP complex (1) directly participates in early spliceosome assembly and (2) mediates recognition of the intron branch site during pre-mRNA splicing by promoting the selection of the pre-mRNA branch-site adenosine, the nucleophile for the first step of splicing. Within the 17S U2 SnRNP complex, SF3B4 is part of the SF3B subcomplex, which is required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA. Sequence independent binding of SF3A and SF3B subcomplexes upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Also acts as a component of the minor spliceosome, which is involved in the splicing of U12-type introns in pre-mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0#function" }, { "database": "UniProtKB", "id": "ARBA00053340", "url": "https://www.uniprot.org/uniprotkb/ARBA00053340#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SF3B4", "url": "https://www.uniprot.org/uniprotkb/F1SDG0", "locus": { "chromosome": "4", "start_pos": 99129218, "end_pos": 99123585, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006665", "url": "https://www.ensembl.org/id/ENSSSCG00000006665" } ] } } ], "crossref": [ { "id": "F1SDG0", "url": "https://alphafold.ebi.ac.uk/entry/F1SDG0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006665", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006665", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12334", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12334", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12335", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12335", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157814", "url": "https://www.ncbi.nlm.nih.gov/gene/100157814", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052084", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052084", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157814", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157814", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AMVYEIM", "url": "https://omabrowser.org/oma/group/AMVYEIM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDG0", "url": "https://www.orthodb.org/?gene=F1SDG0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48030", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48030", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48030:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48030:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72165", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72165", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9943411", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001926524", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926524", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDG0-1", "url": "https://www.uniprot.org/uniprotkb/F1SDG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPAHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ", "length": 424, "header": "tr|F1SDG0-1|F1SDG0_PIG Isoform 1 of Splicing factor 3B subunit 4 OS=Sus scrofa OX=9823 GN=SF3B4 PE=1 SV=1 CANONICAL=F1SDG0-1" }, "isoforms": [ { "isoform_ac": "F1SDG0-1", "url": "https://www.uniprot.org/uniprotkb/F1SDG0/entry#F1SDG0-1", "sequence": { "sequence": "MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPAHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ", "length": 424, "header": "tr|F1SDG0-1|F1SDG0_PIG Isoform 1 of Splicing factor 3B subunit 4 OS=Sus scrofa OX=9823 GN=SF3B4 PE=1 SV=1 CANONICAL=F1SDG0-1" }, "locus": { "chromosome": "4", "start_pos": 99128996, "end_pos": 99123658, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007303.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007303.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007108.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007108.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 280, "start_aa": "Thr", "end_pos": 280, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr280", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 407, "start_aa": "Thr", "end_pos": 407, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr407", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157814", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157814", "resource": "KEGG Pathway" }, { "id": "R-SSC-72165", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72165", "resource": "Reactome", "description": "mRNA Splicing - Minor Pathway" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" }, { "id": "R-SSC-9943411", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "resource": "Reactome", "description": "CHD1 and CHD2 subfamily" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MWR2-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ", "length": 424 }, "evidence": [ { "id": "F1SDG0", "url": "https://omabrowser.org/oma/group/F1SDG0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3H2U6-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "Sf3b4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ", "length": 424 }, "evidence": [ { "id": "F1SDG0", "url": "https://omabrowser.org/oma/group/F1SDG0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "H9L019-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSVPTPVVTALGPGVTPPGLPPPGSFPPPVPPPGAMPPGMPPAMPPPPMPPGAGAPGPPTGAAPTGGHPPHPHAFPPGGMHHPGMPPMQVHHGPPGMGQHHPGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPHFGSPMGHPGPMPHHGMRGPPPLMPPHGYNGPPRPPPYGYQRVPLPPRPAQRPPGVPPRGPLRGPLP", "length": 418 }, "evidence": [ { "id": "F1SDG0", "url": "https://omabrowser.org/oma/group/F1SDG0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q15427-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "SF3B4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ", "length": 424 }, "evidence": [ { "id": "F1SDG0", "url": "https://omabrowser.org/oma/group/F1SDG0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NWB3-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "sf3b4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSMPTPVMTALGAAMPIPGMPPPGAFPPVPPPGTMPPGMPPGMPMPPAPGTPAPQGGGGPPPGHPPFPPAGMHPPGMPHMPMPPTGPPGMVPPPPGPPGSNQPRAPPPPQMPPPPMGVPPRGPFGPPMGPPMHPGMRGPPPPMPPPGYGAGPPRPPPFGFQRGPPMPPRPPAPRGPMRAPAPS", "length": 400 }, "evidence": [ { "id": "F1SDG0", "url": "https://omabrowser.org/oma/group/F1SDG0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8QZY9-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "Sf3b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPPPYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ", "length": 424 }, "evidence": [ { "id": "F1SDG0", "url": "https://omabrowser.org/oma/group/F1SDG0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W424-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "Spx", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAAGPIAERNQDATIYAGGLDDKVSETLLWELFVQAGPVVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSTHADRPHQLFADAPVQTMMPQMPGQIPAQMPGQMMPPPMMAPPPPVVPVSNNNMGMLAPPPPVPQPAPFPATIPPPPLPPMTGGQPPLPPAMGIPPPPRMMQPNAWAPPGMPAPPPRPPPTNWRPPPVPFPPTPYARPYQPDGYQY", "length": 347 }, "evidence": [ { "id": "F1SDG0", "url": "https://omabrowser.org/oma/group/F1SDG0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9ZU66-1", "protein_name": "Splicing factor 3B subunit 4", "gene_name": "EMB2444", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPSSAPQVNGLPRPFANGSMQPVPIPAPRQPPPPPPQVYQTQPPSWPSQPQQHSMVPPPMQFRPPQGMPPPPPPQFLNHQQGFGGPRPPPPPQAMGMHQHGGWPPQHMQQQGGPPQQQQPPYQHHHMSMPPPPPHQG", "length": 363 }, "evidence": [ { "id": "F1SDG0", "url": "https://omabrowser.org/oma/group/F1SDG0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ], "pmid": "" }, { "name": "splicing factor binding", "id": "GO:1990935", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990935", "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "U2 snRNP", "id": "GO:0005686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005686", "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ], "pmid": "" }, { "name": "precatalytic spliceosome", "id": "GO:0071011", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071011", "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ], "pmid": "" }, { "name": "U12-type spliceosomal complex", "id": "GO:0005689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005689", "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ], "pmid": "" }, { "name": "U2-type precatalytic spliceosome", "id": "GO:0071005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071005", "evidence": [ { "database": "UniProtKB", "id": "F1SDG0", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDG0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 424, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDG0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDG0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDG0" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 91, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 280, 407 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDH9-1", "uniprot_ac": "F1SDH9", "uniprot_id": "F1SDH9_PIG", "mass": { "chemical_mass": 49883.0, "monoisotopic_mass": 49883.0 }, "refseq": { "ac": "XP_020941176", "name": "one cut domain family member 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941176" }, "gene_names": [ { "name": "ONECUT3", "type": "recommended", "evidence": [ { "id": "F1SDH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ] }, { "name": "ONECUT3", "type": "synonym", "evidence": [ { "id": "XP_020941176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941176" } ] } ], "protein_names": [ { "name": "One cut domain family member", "type": "recommended", "evidence": [ { "id": "F1SDH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDH9/entry#names_and_taxonomy" } ] }, { "name": "one cut domain family member 3", "type": "synonym", "evidence": [ { "id": "XP_020941176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941176" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ONECUT3", "url": "https://www.uniprot.org/uniprotkb/F1SDH9", "locus": { "chromosome": "2", "start_pos": 76750069, "end_pos": 76769812, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013439", "url": "https://www.ensembl.org/id/ENSSSCG00000013439" } ] } } ], "crossref": [ { "id": "F1SDH9", "url": "https://alphafold.ebi.ac.uk/entry/F1SDH9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512947", "url": "https://www.ncbi.nlm.nih.gov/gene/100512947", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010982", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010982", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051649", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051649", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512947", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512947", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KFHQHAV", "url": "https://omabrowser.org/oma/group/KFHQHAV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SDH9", "url": "https://www.orthodb.org/?gene=F1SDH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14057", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14057", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14057:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14057:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02376", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02376", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020941176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941176", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDH9-1", "url": "https://www.uniprot.org/uniprotkb/F1SDH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELSLESLGGLHGVAHAQAGELLSPSHARSAAAQHRGLVAPGRPGLVAGMASLLDGGSGGGGGAGGAGGSSGAGGGADFRGELAGPLHPAMGMACEAPGLGSTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGAPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGGGSSAGGGSTAGLLAPLGGLAAAGAHGPHAGSGGPGAGGGGPGAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEQQKERALQPKKQRLVFTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCMNRWAEEPGAAPGGPAGASATFSKA", "length": 492, "header": "tr|F1SDH9-1|F1SDH9_PIG Isoform 1 of One cut domain family member OS=Sus scrofa OX=9823 GN=ONECUT3 PE=3 SV=3 CANONICAL=F1SDH9-1" }, "isoforms": [ { "isoform_ac": "F1SDH9-1", "url": "https://www.uniprot.org/uniprotkb/F1SDH9/entry#F1SDH9-1", "sequence": { "sequence": "MELSLESLGGLHGVAHAQAGELLSPSHARSAAAQHRGLVAPGRPGLVAGMASLLDGGSGGGGGAGGAGGSSGAGGGADFRGELAGPLHPAMGMACEAPGLGSTYTTLTPLQHLPPLAAVADKFHQHAAAAAVAGAHGGHPHAHPHPAAAPPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPAMGSPLSPLPNALPPALHGAPQPPPPPPPPPLAAYGAPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGGGSSAGGGSTAGLLAPLGGLAAAGAHGPHAGSGGPGAGGGGPGAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEQQKERALQPKKQRLVFTDLQRRTLIAIFKENKRPSKEMQVTISQQLGLELNTVSNFFMNARRRCMNRWAEEPGAAPGGPAGASATFSKA", "length": 492, "header": "tr|F1SDH9-1|F1SDH9_PIG Isoform 1 of One cut domain family member OS=Sus scrofa OX=9823 GN=ONECUT3 PE=3 SV=3 CANONICAL=F1SDH9-1" }, "locus": { "chromosome": "2", "start_pos": 76769812, "end_pos": 76751073, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014683.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014683.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014288.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014288.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512947", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512947", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZNY2-1", "protein_name": "One cut domain family member", "gene_name": "Onecut3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELSLESLGGLHGVTHAQAGELLSPGHARSAAAQHRSLVASGRPGLVAGMASLLDGGGAGGGGAGGAGAAGAAGGGPDFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAVAGAHGGHPHAHPHPATAPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPTMGSPLSPLPSALPPALHSAPQPPPPPPPLAAYGAPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGAGGGGAAGGAAAGLLAPLGGLATAGAHGPHSGGGGPGGGGGAGGGSGGPGAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQDQQKERALQPKKQRLVFTDLQRRTLIAIFKENKRPSKEMQATISQQLGLELNTVSNFFMNARRRCMNRWAEEPGATPGTATATATFSKA", "length": 491 }, "evidence": [ { "id": "F1SDH9", "url": "https://omabrowser.org/oma/group/F1SDH9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8K557-1", "protein_name": "One cut domain family member 3", "gene_name": "Onecut3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELSLESLGGLHGVTHAQAGELLSPGHARSAAAQHRSLVASGRPGLVAGMASLLDGGGAGGGGAGGAGAAGAAGGGPDFRGELAGPLHPAMGMACEAPGLGGTYTTLTPLQHLPPLAAVADKFHQHAVAGAHGGHPHAHPHPATAPPPPPPQRLAASVSGSFTLMRDERAALASVGHLYGPYGKELPTMGSPLSPLPSALPPALHSAPQPPPPPPLAAYGAPGHLAGDKLLPPAAFEPHAALLGRAEDALARGLPGGGGGAGGGGAAGGAAAGLLAPLGGLAAAGAHGPHSGGGGPGGGGGAGGGSGGPGAGAAAEEINTKEVAQRITAELKRYSIPQAIFAQRILCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQDQQKERALQPKKQRLVFTDLQRRTLIAIFKENKRPSKEMQATISQQLGLELNTVSNFFMNARRRCMNRWAEEPGATPGTGTATATFSKA", "length": 490 }, "evidence": [ { "id": "F1SDH9", "url": "https://omabrowser.org/oma/group/F1SDH9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SDH9", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDH9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 492, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDH9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDH9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" }, { "id": "PS51042", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51042" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CUT", "eco_id": "ECO_0000259", "start_pos": 310, "end_pos": 396, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDH9" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 410, "end_pos": 470, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDK7-1", "uniprot_ac": "F1SDK7", "uniprot_id": "F1SDK7_PIG", "mass": { "chemical_mass": 32350.0, "monoisotopic_mass": 32350.0 }, "refseq": { "ac": "XP_001928269", "name": "forkhead box protein I2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928269" }, "gene_names": [ { "name": "FOXI2", "type": "recommended", "evidence": [ { "id": "F1SDK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ] }, { "name": "FOXI2", "type": "synonym", "evidence": [ { "id": "XP_001928269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928269" } ] } ], "protein_names": [ { "name": "Forkhead box protein L2", "type": "recommended", "evidence": [ { "id": "F1SDK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDK7/entry#names_and_taxonomy" } ] }, { "name": "forkhead box protein I2", "type": "synonym", "evidence": [ { "id": "XP_001928269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928269" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FOXI2", "url": "https://www.uniprot.org/uniprotkb/F1SDK7", "locus": { "chromosome": "14", "start_pos": 136989551, "end_pos": 136986720, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010752", "url": "https://www.ensembl.org/id/ENSSSCG00000010752" } ] } } ], "crossref": [ { "id": "F1SDK7", "url": "https://alphafold.ebi.ac.uk/entry/F1SDK7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010752", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010752", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20053", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20053", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157475", "url": "https://www.ncbi.nlm.nih.gov/gene/100157475", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030456", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030456", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050211", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050211", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157475", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157475", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDK7", "url": "https://www.orthodb.org/?gene=F1SDK7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11829", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11829", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11829:SF372", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11829:SF372", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00250", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00250", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928269", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928269", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDK7-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASYCDGSGRCQAPHSQTRAAAHPAGYARGDLGAAGGGPRLWLNAPALSSVPYAPGPGSTSPYGAPGPLLGVPGGLVGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRGEASTAAPSGARSPGGAKARELEALGAASPDLQAASSPPASDAAACFSSFASAMGALAGGLGTLPGGLAGDFSFGRSTTVTAQGPQFPGPAPGFPAGHQTATTSFRPGRFVYSQEGTEV", "length": 312, "header": "tr|F1SDK7-1|F1SDK7_PIG Isoform 1 of Forkhead box protein L2 OS=Sus scrofa OX=9823 GN=FOXI2 PE=4 SV=3 CANONICAL=F1SDK7-1" }, "isoforms": [ { "isoform_ac": "F1SDK7-1", "url": "https://www.uniprot.org/uniprotkb/F1SDK7/entry#F1SDK7-1", "sequence": { "sequence": "MASYCDGSGRCQAPHSQTRAAAHPAGYARGDLGAAGGGPRLWLNAPALSSVPYAPGPGSTSPYGAPGPLLGVPGGLVGADLAWLSLSGQQELLRLVRPPYSYSALIAMAIQSAPLRKLTLSQIYQYVAGNFPFYKRSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKRKRRGEASTAAPSGARSPGGAKARELEALGAASPDLQAASSPPASDAAACFSSFASAMGALAGGLGTLPGGLAGDFSFGRSTTVTAQGPQFPGPAPGFPAGHQTATTSFRPGRFVYSQEGTEV", "length": 312, "header": "tr|F1SDK7-1|F1SDK7_PIG Isoform 1 of Forkhead box protein L2 OS=Sus scrofa OX=9823 GN=FOXI2 PE=4 SV=3 CANONICAL=F1SDK7-1" }, "locus": { "chromosome": "14", "start_pos": 136988547, "end_pos": 136986882, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011764.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011764.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011462.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011462.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157475", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157475", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "pmid": "" }, { "name": "animal organ development", "id": "GO:0048513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048513", "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "pmid": "" }, { "name": "anatomical structure morphogenesis", "id": "GO:0009653", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009653", "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SDK7", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 148, "end_pos": 150, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDK7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDK7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDK7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDK7" }, { "id": "PS50039", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50039" }, { "id": "PRU00089", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fork-head", "eco_id": "ECO_0000259", "start_pos": 97, "end_pos": 191, "start_aa": "Arg", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 148, "end_pos": 150 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDP1-1", "uniprot_ac": "F1SDP1", "uniprot_id": "F1SDP1_PIG", "mass": { "chemical_mass": 25573.0, "monoisotopic_mass": 25573.0 }, "refseq": { "ac": "XP_003133268", "name": "protein-lysine N-methyltransferase METTL10 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133268" }, "gene_names": [ { "name": "FAM53B", "type": "recommended", "evidence": [ { "id": "F1SDP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ] }, { "name": "EEF1AKMT2", "type": "synonym", "evidence": [ { "id": "XP_003133268", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133268" }, { "id": "F1SDP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ] }, { "name": "METTL10", "type": "synonym", "evidence": [ { "id": "F1SDP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ] } ], "protein_names": [ { "name": "EEF1A lysine methyltransferase 2", "type": "recommended", "evidence": [ { "id": "F1SDP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP1/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.-", "type": "synonym", "evidence": [ { "id": "F1SDP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP1/entry#names_and_taxonomy" } ] }, { "name": "Methyltransferase-like protein 10", "type": "synonym", "evidence": [ { "id": "F1SDP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP1/entry#names_and_taxonomy" } ] }, { "name": "Protein-lysine N-methyltransferase METTL10", "type": "synonym", "evidence": [ { "id": "F1SDP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP1/entry#names_and_taxonomy" } ] }, { "name": "protein-lysine N-methyltransferase METTL10 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_003133268", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133268" } ] } ], "function": [ { "annotation": "Protein-lysine methyltransferase that selectively catalyzes the trimethylation of EEF1A at 'Lys-318'.", "evidence": [ { "database": "UniProtKB", "id": "F1SDP1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1#function" }, { "database": "HAMAP", "id": "MF_03188", "url": "https://hamap.expasy.org/signature/MF_03188" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDP1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM53B", "url": "https://www.uniprot.org/uniprotkb/F1SDP1", "locus": { "chromosome": "14", "start_pos": 134002228, "end_pos": 134082462, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010732", "url": "https://www.ensembl.org/id/ENSSSCG00000010732" } ] } } ], "crossref": [ { "id": "F1SDP1", "url": "https://alphafold.ebi.ac.uk/entry/F1SDP1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010732", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010732", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521159", "url": "https://www.ncbi.nlm.nih.gov/gene/100521159", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521159", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521159", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDP1", "url": "https://www.orthodb.org/?gene=F1SDP1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12843", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12843", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12843:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12843:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13847", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13847", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8876725", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876725", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003133268", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133268", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "54192", "url": "https://www.rhea-db.org/rhea/54192", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDP1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDP1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEGADGGGDGASARSPGGSPGGDGFAPSALGTREHWDAVYERELQTFQEYGDTGEIWFGEESMTRLIRWMQKHKIPLDASVLDIGTGNGVFLVELAKSGFSNITGIDYSPSAIRLSGSIIEKEGLSNIKLKVEDFLNPSTKLSGFHVCIDKGTFDAISLHPDSAVEKRKQYVQSLSRALNVKGFFLITSCNWTKEELLNEFSEGFELFEELPTPKFTFGGRSGNSVAALVFQKT", "length": 235, "header": "tr|F1SDP1-1|F1SDP1_PIG Isoform 1 of EEF1A lysine methyltransferase 2 OS=Sus scrofa OX=9823 GN=FAM53B PE=3 SV=4 CANONICAL=F1SDP1-1" }, "isoforms": [ { "isoform_ac": "F1SDP1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1/entry#F1SDP1-1", "sequence": { "sequence": "MSEGADGGGDGASARSPGGSPGGDGFAPSALGTREHWDAVYERELQTFQEYGDTGEIWFGEESMTRLIRWMQKHKIPLDASVLDIGTGNGVFLVELAKSGFSNITGIDYSPSAIRLSGSIIEKEGLSNIKLKVEDFLNPSTKLSGFHVCIDKGTFDAISLHPDSAVEKRKQYVQSLSRALNVKGFFLITSCNWTKEELLNEFSEGFELFEELPTPKFTFGGRSGNSVAALVFQKT", "length": 235, "header": "tr|F1SDP1-1|F1SDP1_PIG Isoform 1 of EEF1A lysine methyltransferase 2 OS=Sus scrofa OX=9823 GN=FAM53B PE=3 SV=4 CANONICAL=F1SDP1-1" }, "locus": { "chromosome": "14", "start_pos": 134154612, "end_pos": 134135360, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030704.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030704.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022103.4", "url": "https://www.ensembl.org/id/ENSSSCP00000022103.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDP1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521159", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521159", "resource": "KEGG Pathway" }, { "id": "R-SSC-8876725", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876725", "resource": "Reactome", "description": "Protein methylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SDP1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SDP1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SDP1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "F1SDP1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-lysine N-methyltransferase activity", "id": "GO:0016279", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016279", "evidence": [ { "database": "UniProtKB", "id": "F1SDP1", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "54192", "name": "", "equation": "L-lysyl-[protein] + 3 S-adenosyl-L-methionine = N(6),N(6),N(6)-trimethyl-L-lysyl-[protein] + 3 S-adenosyl-L-homocysteine + 3 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54192", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54192" } ] }, { "id": "R-SSC-8932413", "name": "METTL10 transfers 3xCH3 from 3xAdoMet to EEF1A1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-SSC-8932419" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8932413", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8932413" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-8932419", "participant_name": "EEF1A1 [cytosol]", "crossref": [ { "id": "ENSSSCP00000035282", "database": "ENSEMBL", "url": "" }, { "id": "A0A286ZUI3", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000063597", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000004489", "database": "ENSEMBL", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDP1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 235, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDP1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDP1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP1" }, { "id": "PF13847", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13847" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyltransferase", "eco_id": "ECO_0000259", "start_pos": 80, "end_pos": 210, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 192, "end_pos": 194 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDP4-1", "uniprot_ac": "F1SDP4", "uniprot_id": "F1SDP4_PIG", "mass": { "chemical_mass": 32739.0, "monoisotopic_mass": 32739.0 }, "refseq": {}, "gene_names": [ { "name": "NKX1-2", "type": "recommended", "evidence": [ { "id": "F1SDP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP4" } ] } ], "protein_names": [ { "name": "NK1 homeobox 2", "type": "synonym", "evidence": [ { "id": "F1SDP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDP4", "url": "https://www.uniprot.org/uniprotkb/F1SDP4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NKX1-2", "url": "https://www.uniprot.org/uniprotkb/F1SDP4", "locus": { "chromosome": "14", "start_pos": 133853193, "end_pos": 133856326, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010733", "url": "https://www.ensembl.org/id/ENSSSCG00000010733" } ] } } ], "crossref": [ { "id": "F1SDP4", "url": "https://alphafold.ebi.ac.uk/entry/F1SDP4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010733", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010733", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24340", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24340", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24340:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24340:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SDP4", "url": "https://www.uniprot.org/uniprotkb/F1SDP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPALREAKKSLAEAEAGKDATRGDPARQRETPDAAGRGAGAASPLVGSEAEEAEEEEEPRRQRQRERAARLQEGPTRFPEARAGALAAAERSSGGLAGSPGSPGSPRPRRRRSEPSCSKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAEGTAQAAGGAPQPVTPGAAAGAGGGGGGSGGSPGPSGPGAMSFQTFPSYSAANILFPAAASFPLTAAAAAAAAGGSFAPFLGPSYLNPFYAPHL", "length": 315, "header": "tr|F1SDP4-1|F1SDP4_PIG Isoform 1 of NK1 homeobox 2 OS=Sus scrofa OX=9823 GN=NKX1-2 PE=4 SV=3 CANONICAL=F1SDP4-1" }, "isoforms": [ { "isoform_ac": "F1SDP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDP4/entry#F1SDP4-1", "sequence": { "sequence": "MLAWQDGGAKAAPSHHKISFSVLDILDPQKFTRAALPAVRPALREAKKSLAEAEAGKDATRGDPARQRETPDAAGRGAGAASPLVGSEAEEAEEEEEPRRQRQRERAARLQEGPTRFPEARAGALAAAERSSGGLAGSPGSPGSPRPRRRRSEPSCSKPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGAEGTAQAAGGAPQPVTPGAAAGAGGGGGGSGGSPGPSGPGAMSFQTFPSYSAANILFPAAASFPLTAAAAAAAAGGSFAPFLGPSYLNPFYAPHL", "length": 315, "header": "tr|F1SDP4-1|F1SDP4_PIG Isoform 1 of NK1 homeobox 2 OS=Sus scrofa OX=9823 GN=NKX1-2 PE=4 SV=3 CANONICAL=F1SDP4-1" }, "locus": { "chromosome": "14", "start_pos": 133855747, "end_pos": 133853196, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011745.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011745.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011443.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011443.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 236, "start_aa": "Thr", "end_pos": 236, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr236", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDP4", "url": "https://www.uniprot.org/uniprotkb/F1SDP4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SDP4", "url": "https://www.uniprot.org/uniprotkb/F1SDP4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SDP4", "url": "https://www.uniprot.org/uniprotkb/F1SDP4" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SDP4", "url": "https://www.uniprot.org/uniprotkb/F1SDP4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SDP4", "url": "https://www.uniprot.org/uniprotkb/F1SDP4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SDP4", "url": "https://www.uniprot.org/uniprotkb/F1SDP4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDP4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 315, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDP4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDP4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDP4" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 157, "end_pos": 217, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 236 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDR4-1", "uniprot_ac": "F1SDR4", "uniprot_id": "F1SDR4_PIG", "mass": { "chemical_mass": 17814.0, "monoisotopic_mass": 17814.0 }, "refseq": {}, "gene_names": [ { "name": "WFDC5", "type": "recommended", "evidence": [ { "id": "F1SDR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDR4" } ] } ], "protein_names": [ { "name": "WAP four-disulfide core domain protein 5", "type": "recommended", "evidence": [ { "id": "F1SDR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDR4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative acid-stable proteinase inhibitor.", "evidence": [ { "database": "UniProtKB", "id": "F1SDR4", "url": "https://www.uniprot.org/uniprotkb/F1SDR4#function" }, { "database": "UniProtKB", "id": "ARBA00003209", "url": "https://www.uniprot.org/uniprotkb/ARBA00003209#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDR4", "url": "https://www.uniprot.org/uniprotkb/F1SDR4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WFDC5", "url": "https://www.uniprot.org/uniprotkb/F1SDR4", "locus": { "chromosome": "17", "start_pos": 47499935, "end_pos": 47506306, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007384", "url": "https://www.ensembl.org/id/ENSSSCG00000007384" } ] } } ], "crossref": [ { "id": "F1SDR4", "url": "https://alphafold.ebi.ac.uk/entry/F1SDR4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007384", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007384", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050514", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050514", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19441", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19441", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19441:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19441:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00095", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00095", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SDR4", "url": "https://www.uniprot.org/uniprotkb/F1SDR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDR4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAQSLLLLVALLALGSQLPAALGRKKGEKSGGCPPDDGPCLLSVPDQCVDDSQCPSRMKCCHQACFRQCVRKVSVKKGSCPKDPLRCLSRVQHLCSKDSDCRGLSRCCLGACGRDCRNPVGQFRLRIHSSEPQIGVPSLQEDGMMAGLGPCHLDVALFARGNSTF", "length": 166, "header": "tr|F1SDR4-1|F1SDR4_PIG Isoform 1 of WAP four-disulfide core domain protein 5 OS=Sus scrofa OX=9823 GN=WFDC5 PE=4 SV=3 CANONICAL=F1SDR4-1" }, "isoforms": [ { "isoform_ac": "F1SDR4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDR4/entry#F1SDR4-1", "sequence": { "sequence": "MRAQSLLLLVALLALGSQLPAALGRKKGEKSGGCPPDDGPCLLSVPDQCVDDSQCPSRMKCCHQACFRQCVRKVSVKKGSCPKDPLRCLSRVQHLCSKDSDCRGLSRCCLGACGRDCRNPVGQFRLRIHSSEPQIGVPSLQEDGMMAGLGPCHLDVALFARGNSTF", "length": 166, "header": "tr|F1SDR4-1|F1SDR4_PIG Isoform 1 of WAP four-disulfide core domain protein 5 OS=Sus scrofa OX=9823 GN=WFDC5 PE=4 SV=3 CANONICAL=F1SDR4-1" }, "locus": { "chromosome": "17", "start_pos": 47506226, "end_pos": 47500775, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008082.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008082.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007867.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007867.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDR4", "url": "https://www.uniprot.org/uniprotkb/F1SDR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1SDR4", "url": "https://www.uniprot.org/uniprotkb/F1SDR4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SDR4", "url": "https://www.uniprot.org/uniprotkb/F1SDR4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "antibacterial humoral response", "id": "GO:0019731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019731", "evidence": [ { "database": "UniProtKB", "id": "F1SDR4", "url": "https://www.uniprot.org/uniprotkb/F1SDR4" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1SDR4", "url": "https://www.uniprot.org/uniprotkb/F1SDR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDR4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 166, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDR4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDR4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDR4" }, { "id": "PS51390", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51390" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WAP", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 73, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDS1-1", "uniprot_ac": "F1SDS1", "uniprot_id": "F1SDS1_PIG", "mass": { "chemical_mass": 39893.0, "monoisotopic_mass": 39893.0 }, "refseq": {}, "gene_names": [ { "name": "KCNK15", "type": "recommended", "evidence": [ { "id": "F1SDS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDS1" } ] } ], "protein_names": [ { "name": "Potassium two pore domain channel subfamily K member 15", "type": "synonym", "evidence": [ { "id": "F1SDS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDS1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDS1", "url": "https://www.uniprot.org/uniprotkb/F1SDS1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNK15", "url": "https://www.uniprot.org/uniprotkb/F1SDS1", "locus": { "chromosome": "17", "start_pos": 47166382, "end_pos": 47160774, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007377", "url": "https://www.ensembl.org/id/ENSSSCG00000007377" } ] } } ], "crossref": [ { "id": "F1SDS1", "url": "https://alphafold.ebi.ac.uk/entry/F1SDS1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007377", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007377", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003092", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003092", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11003:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11003:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5576886", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576886", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDS1", "url": "https://www.uniprot.org/uniprotkb/F1SDS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDS1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDS1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSVFLPPPRPPASQLLWLQTHWLLCLKDPGAPGSAMRKQSLRTAALILCILSYLLVGAAVFDALESEAESGRKRLLAQKRSELRRKYGFSTEDYRELERLALQAEPHRAGRQWKFAGSFYFAITVITTIGYGHAAPGTDSGKVFCMFYALLGIPLTLVTFQSLGERLNALVRRLLLAAKRCLGLRRPHVSTENMVVAGLLGCAATLALGAAAFAHFEGWTFFHAYYYCFITLTTIGFGDFVALQRDEALQRKPPYVAFSFLYILLGLTVIGAFLNLVVLRFLAASAEAPERSARQLRRGAPESCGPALPRRPAHPAGSTPAYFRVHQLELWVRDNLGFSPPASPGVRGGGSGAGRAPARRKSI", "length": 364, "header": "tr|F1SDS1-1|F1SDS1_PIG Isoform 1 of Potassium two pore domain channel subfamily K member 15 OS=Sus scrofa OX=9823 GN=KCNK15 PE=3 SV=4 CANONICAL=F1SDS1-1" }, "isoforms": [ { "isoform_ac": "F1SDS1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDS1/entry#F1SDS1-1", "sequence": { "sequence": "MDSVFLPPPRPPASQLLWLQTHWLLCLKDPGAPGSAMRKQSLRTAALILCILSYLLVGAAVFDALESEAESGRKRLLAQKRSELRRKYGFSTEDYRELERLALQAEPHRAGRQWKFAGSFYFAITVITTIGYGHAAPGTDSGKVFCMFYALLGIPLTLVTFQSLGERLNALVRRLLLAAKRCLGLRRPHVSTENMVVAGLLGCAATLALGAAAFAHFEGWTFFHAYYYCFITLTTIGFGDFVALQRDEALQRKPPYVAFSFLYILLGLTVIGAFLNLVVLRFLAASAEAPERSARQLRRGAPESCGPALPRRPAHPAGSTPAYFRVHQLELWVRDNLGFSPPASPGVRGGGSGAGRAPARRKSI", "length": 364, "header": "tr|F1SDS1-1|F1SDS1_PIG Isoform 1 of Potassium two pore domain channel subfamily K member 15 OS=Sus scrofa OX=9823 GN=KCNK15 PE=3 SV=4 CANONICAL=F1SDS1-1" }, "locus": { "chromosome": "17", "start_pos": 47166360, "end_pos": 47160774, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008075.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008075.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007860.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007860.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 320, "start_aa": "Thr", "end_pos": 320, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr320", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDS1", "url": "https://www.uniprot.org/uniprotkb/F1SDS1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5576886", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576886", "resource": "Reactome", "description": "Phase 4 - resting membrane potential" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "potassium ion leak channel activity", "id": "GO:0022841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022841", "evidence": [ { "database": "UniProtKB", "id": "F1SDS1", "url": "https://www.uniprot.org/uniprotkb/F1SDS1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SDS1", "url": "https://www.uniprot.org/uniprotkb/F1SDS1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "F1SDS1", "url": "https://www.uniprot.org/uniprotkb/F1SDS1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDS1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDS1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDS1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDS1" }, { "id": "PF07885", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07885" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Potassium channel", "eco_id": "ECO_0000259", "start_pos": 112, "end_pos": 168, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 320 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDT4-1", "uniprot_ac": "F1SDT4", "uniprot_id": "F1SDT4_PIG", "mass": { "chemical_mass": 90562.0, "monoisotopic_mass": 90562.0 }, "refseq": {}, "gene_names": [ { "name": "L3MBTL1", "type": "recommended", "evidence": [ { "id": "F1SDT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ] } ], "protein_names": [ { "name": "Lethal(3)malignant brain tumor-like protein 1", "type": "recommended", "evidence": [ { "id": "F1SDT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDT4/entry#names_and_taxonomy" } ] }, { "name": "L(3)mbt protein homolog", "type": "synonym", "evidence": [ { "id": "F1SDT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDT4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Polycomb group (PcG) protein that specifically recognizes and binds mono- and dimethyllysine residues on target proteins, thereby acting as a 'reader' of a network of post-translational modifications. PcG proteins maintain the transcriptionally repressive state of genes: acts as a chromatin compaction factor by recognizing and binding mono- and dimethylated histone H1b/H1-4 at 'Lys-26' (H1bK26me1 and H1bK26me2) and histone H4 at 'Lys-20' (H4K20me1 and H4K20me2), leading to condense chromatin and repress transcription. Recognizes and binds p53/TP53 monomethylated at 'Lys-382', leading to repress p53/TP53-target genes. Also recognizes and binds RB1/RB monomethylated at 'Lys-860'. Participates in the ETV6-mediated repression. Probably plays a role in cell proliferation. Overexpression induces multinucleated cells, suggesting that it is required to accomplish normal mitosis.", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4#function" }, { "database": "UniProtKB", "id": "ARBA00055759", "url": "https://www.uniprot.org/uniprotkb/ARBA00055759#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "L3MBTL1", "url": "https://www.uniprot.org/uniprotkb/F1SDT4", "locus": { "chromosome": "17", "start_pos": 46173944, "end_pos": 46136013, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000055642", "url": "https://www.ensembl.org/id/ENSSSCG00000055642" } ] } } ], "crossref": [ { "id": "F1SDT4", "url": "https://alphafold.ebi.ac.uk/entry/F1SDT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007362", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007362", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20131", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20131", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20134", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20134", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20137", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20137", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004092", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004092", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12247:SF69", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12247:SF69", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02820", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02820", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6804760", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804760", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDT4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGHAEMEMLRTLKGPSTGEVSVHLVARDSPGSGSHLPTTAFIIPASSATLGLPSSALDVTCFPREPIHVGAPERVAGSVPVTATILPQLSAGPAASPSTSTVRLLEWTEAAAPPSGSGLRFRISEYASPNMVGAEQPPSPELRREGEAEYEDGEAPAGGGDAGPQQPADLPQAAPEDPPRDPPEDDGTCQCQACGPQQGAGPDPGSSNDGCPQLFQERSVIVENSSGQNNSCTSASELLKPMKKRKHRDYQSPSEEESEPEAMEKQEGGKDPEGQPTASTPESEEWNSSQSTSGEKKEGWSWEPYLEEQKAVTAPVSLFQDYQAVTHNKNGFRLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWINANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDGRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDSFCWEKYLEETGASAVPAWAFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKLHFDGWSHAYDFWIDADHPDIHPAGWCSKTGHPLQPPLRPREPSSPSPGGCPPLSYRSPHTRTSKYSFHHRKCPTPGCDGSGHVTGKFTAHHCLSGCPLAERNQSRLKAELSDTEASARKRSLSGFSLRKKPRHHGRIGRPPKYQKIPQDDFPTLTADVMHPSLFMSALSAHPDRPLSVCWEQHCKLLPGVAGISASTVAKWTIDEMIDGEAFLLLTQADIVKIMSVKLGPALKIYNAILMFKNADDTLK", "length": 825, "header": "tr|F1SDT4-1|F1SDT4_PIG Isoform 1 of Lethal(3)malignant brain tumor-like protein 1 OS=Sus scrofa OX=9823 GN=L3MBTL1 PE=4 SV=5 CANONICAL=F1SDT4-1" }, "isoforms": [ { "isoform_ac": "F1SDT4-1", "url": "https://www.uniprot.org/uniprotkb/F1SDT4/entry#F1SDT4-1", "sequence": { "sequence": "MEGHAEMEMLRTLKGPSTGEVSVHLVARDSPGSGSHLPTTAFIIPASSATLGLPSSALDVTCFPREPIHVGAPERVAGSVPVTATILPQLSAGPAASPSTSTVRLLEWTEAAAPPSGSGLRFRISEYASPNMVGAEQPPSPELRREGEAEYEDGEAPAGGGDAGPQQPADLPQAAPEDPPRDPPEDDGTCQCQACGPQQGAGPDPGSSNDGCPQLFQERSVIVENSSGQNNSCTSASELLKPMKKRKHRDYQSPSEEESEPEAMEKQEGGKDPEGQPTASTPESEEWNSSQSTSGEKKEGWSWEPYLEEQKAVTAPVSLFQDYQAVTHNKNGFRLGMKLEGIDPQHPSMYFILTVAEVCGYRLRLHFDGYSECHDFWINANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTRAQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDGRFLVHFDNWDDTYDYWCDPSSPYIHPVGWCQKQGKPLTPPQDYPDPDSFCWEKYLEETGASAVPAWAFKVRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKLHFDGWSHAYDFWIDADHPDIHPAGWCSKTGHPLQPPLRPREPSSPSPGGCPPLSYRSPHTRTSKYSFHHRKCPTPGCDGSGHVTGKFTAHHCLSGCPLAERNQSRLKAELSDTEASARKRSLSGFSLRKKPRHHGRIGRPPKYQKIPQDDFPTLTADVMHPSLFMSALSAHPDRPLSVCWEQHCKLLPGVAGISASTVAKWTIDEMIDGEAFLLLTQADIVKIMSVKLGPALKIYNAILMFKNADDTLK", "length": 825, "header": "tr|F1SDT4-1|F1SDT4_PIG Isoform 1 of Lethal(3)malignant brain tumor-like protein 1 OS=Sus scrofa OX=9823 GN=L3MBTL1 PE=4 SV=5 CANONICAL=F1SDT4-1" }, "locus": { "chromosome": "17", "start_pos": 46173941, "end_pos": 46143641, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008061.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008061.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007846.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007846.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 650, "start_aa": "Thr", "end_pos": 650, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr650", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6804760", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804760", "resource": "Reactome", "description": "Regulation of TP53 Activity through Methylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "F1SDT4", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 678, "end_pos": 680, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDT4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 825, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDT4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDT4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDT4" }, { "id": "PS51079", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51079" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MBT", "eco_id": "ECO_0000259", "start_pos": 301, "end_pos": 401, "start_aa": "Trp", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 650 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 225, "end_pos": 227 }, { "start_pos": 230, "end_pos": 232 }, { "start_pos": 288, "end_pos": 290 }, { "start_pos": 678, "end_pos": 680 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDX1-1", "uniprot_ac": "F1SDX1", "uniprot_id": "F1SDX1_PIG", "mass": { "chemical_mass": 67507.0, "monoisotopic_mass": 67507.0 }, "refseq": {}, "gene_names": [ { "name": "ACTR5", "type": "recommended", "evidence": [ { "id": "F1SDX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ] } ], "protein_names": [ { "name": "Actin-related protein 5", "type": "recommended", "evidence": [ { "id": "F1SDX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDX1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Involved in DNA double-strand break repair and UV-damage excision repair.", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1#function" }, { "database": "UniProtKB", "id": "ARBA00054422", "url": "https://www.uniprot.org/uniprotkb/ARBA00054422#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACTR5", "url": "https://www.uniprot.org/uniprotkb/F1SDX1", "locus": { "chromosome": "17", "start_pos": 41724393, "end_pos": 41702540, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007349", "url": "https://www.ensembl.org/id/ENSSSCG00000007349" } ] } } ], "crossref": [ { "id": "F1SDX1", "url": "https://alphafold.ebi.ac.uk/entry/F1SDX1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007349", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007349", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10211", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10211", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00022", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00022", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDX1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAANVFPFRDARAAPDPVLEAGPVAHGPQPVPLVLDNGSFQARAGWACPGPDPGPEPRLQFRSVCARGRGGARGGAGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQHLGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNTPKNLISSGLIISSGYQCTHILPILEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLSRMEEILHEHSYIAEDYVEELQKWRCPDYYENNVHKMQLPFSSKLLGSTLTSEEKQERRQQQLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSYIQKLSAAVEQAKQKMLQAEVSLEVDVVDSKPETPDLEQLEPSLEEVESINDFEPLFSDETPEAEKPVTTVQPVFNLAAYHQLFVGTERIRAPEIIFQPSLIGEEQAGIAETLQYILDRYPKDVQELLVQNVFLTGGNMMYPGMKGRIEKELLEMRPFQSSFQVQLASNPVLDAWYGARGWALDHLDDEDVWITRKDYEEKGGGYLKEHCASNVYVPIRLPKQASRSEAQASSKGGAGEQA", "length": 600, "header": "tr|F1SDX1-1|F1SDX1_PIG Isoform 1 of Actin-related protein 5 OS=Sus scrofa OX=9823 GN=ACTR5 PE=3 SV=3 CANONICAL=F1SDX1-1" }, "isoforms": [ { "isoform_ac": "F1SDX1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1/entry#F1SDX1-1", "sequence": { "sequence": "MAANVFPFRDARAAPDPVLEAGPVAHGPQPVPLVLDNGSFQARAGWACPGPDPGPEPRLQFRSVCARGRGGARGGAGPQVGNALGSLEPLRWMLRSPFDRNVPVNLELQELLLDYSFQHLGVSSQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYGIPKVAYGIDSLFSFYHNTPKNLISSGLIISSGYQCTHILPILEGRLDAKNCKRINLGGSQAAGYLQRLLQLKYPGHLAAITLSRMEEILHEHSYIAEDYVEELQKWRCPDYYENNVHKMQLPFSSKLLGSTLTSEEKQERRQQQLRRLQELNARRREEKLQLDQERLDRLLYVQELLEDGQMDQFHKALIELNMDSPEELQSYIQKLSAAVEQAKQKMLQAEVSLEVDVVDSKPETPDLEQLEPSLEEVESINDFEPLFSDETPEAEKPVTTVQPVFNLAAYHQLFVGTERIRAPEIIFQPSLIGEEQAGIAETLQYILDRYPKDVQELLVQNVFLTGGNMMYPGMKGRIEKELLEMRPFQSSFQVQLASNPVLDAWYGARGWALDHLDDEDVWITRKDYEEKGGGYLKEHCASNVYVPIRLPKQASRSEAQASSKGGAGEQA", "length": 600, "header": "tr|F1SDX1-1|F1SDX1_PIG Isoform 1 of Actin-related protein 5 OS=Sus scrofa OX=9823 GN=ACTR5 PE=3 SV=3 CANONICAL=F1SDX1-1" }, "locus": { "chromosome": "17", "start_pos": 41721651, "end_pos": 41702540, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008041.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008041.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007827.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007827.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 11, "go_terms": [ { "name": "regulation of DNA strand elongation", "id": "GO:0060382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060382", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "regulation of chromosome organization", "id": "GO:0033044", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033044", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "double-strand break repair", "id": "GO:0006302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006302", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "regulation of DNA replication", "id": "GO:0006275", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006275", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "UV-damage excision repair", "id": "GO:0070914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070914", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" }, { "name": "Ino80 complex", "id": "GO:0031011", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031011", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "enzyme regulator activity", "id": "GO:0030234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030234", "evidence": [ { "database": "UniProtKB", "id": "F1SDX1", "url": "https://www.uniprot.org/uniprotkb/F1SDX1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDX1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 600, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDX1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDX1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDY1-1", "uniprot_ac": "F1SDY1", "uniprot_id": "F1SDY1_PIG", "mass": { "chemical_mass": 57163.0, "monoisotopic_mass": 57163.0 }, "refseq": {}, "gene_names": [ { "name": "BEST2", "type": "recommended", "evidence": [ { "id": "F1SDY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ] } ], "protein_names": [ { "name": "Bestrophin", "type": "recommended", "evidence": [ { "id": "F1SDY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Forms calcium-sensitive chloride channels. Permeable to bicarbonate.", "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1#function" }, { "database": "UniProtKB", "id": "RU363126", "url": "https://www.uniprot.org/uniprotkb/RU363126#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BEST2", "url": "https://www.uniprot.org/uniprotkb/F1SDY1", "locus": { "chromosome": "2", "start_pos": 66242999, "end_pos": 66248784, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013733", "url": "https://www.ensembl.org/id/ENSSSCG00000013733" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013733", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013733", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021134", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021134", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "APECGCG", "url": "https://omabrowser.org/oma/group/APECGCG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10736:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10736:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01062", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01062", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2672351", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "29823", "url": "https://www.rhea-db.org/rhea/29823", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDY1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVTYTARVANARFGGFSKLLLLWRGSIYKLLWRELLCFLGLYMALSAAYRFVLTEEQKRYFEKLVIYCDQYASLIPVSFVLGFYVTLVVHRWWNQYLSMPMPDPLMCVVVGTVHGRDERGRLYRRTLMRYAGLSGVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSPYNKYWVPCVWFSNLAAQARREGRIRDNGALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVVTIAVYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRGFQVSMLAVDEMYDDLAMLEKDLYWDAAEARAPYTAATAFLRQQPFQGSTFDITLAKEDMQFQWQEGMDAPLGDAQGDLLQRLLPMGAGMTSGGLLGRRLSLLRRKNSCVSEASVAGSCACSGAPDGTAPECGCGDTLLDVGQREPESEPPPGLEPPVPGLPTEPFTVAPIPGSRGPAPPWLPSPIGEEEENLA", "length": 507, "header": "tr|F1SDY1-1|F1SDY1_PIG Isoform 1 of Bestrophin OS=Sus scrofa OX=9823 GN=BEST2 PE=3 SV=1 CANONICAL=F1SDY1-1" }, "isoforms": [ { "isoform_ac": "F1SDY1-1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1/entry#F1SDY1-1", "sequence": { "sequence": "MTVTYTARVANARFGGFSKLLLLWRGSIYKLLWRELLCFLGLYMALSAAYRFVLTEEQKRYFEKLVIYCDQYASLIPVSFVLGFYVTLVVHRWWNQYLSMPMPDPLMCVVVGTVHGRDERGRLYRRTLMRYAGLSGVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSPYNKYWVPCVWFSNLAAQARREGRIRDNGALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVVTIAVYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRGFQVSMLAVDEMYDDLAMLEKDLYWDAAEARAPYTAATAFLRQQPFQGSTFDITLAKEDMQFQWQEGMDAPLGDAQGDLLQRLLPMGAGMTSGGLLGRRLSLLRRKNSCVSEASVAGSCACSGAPDGTAPECGCGDTLLDVGQREPESEPPPGLEPPVPGLPTEPFTVAPIPGSRGPAPPWLPSPIGEEEENLA", "length": 507, "header": "tr|F1SDY1-1|F1SDY1_PIG Isoform 1 of Bestrophin OS=Sus scrofa OX=9823 GN=BEST2 PE=3 SV=1 CANONICAL=F1SDY1-1" }, "locus": { "chromosome": "2", "start_pos": 66247692, "end_pos": 66243406, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015007.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015007.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014603.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014603.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2672351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "resource": "Reactome", "description": "Stimuli-sensing channels" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A3A7-1", "protein_name": "Bestrophin", "gene_name": "Best2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGLYMALSAAYRFLLAEEQKRYFEKLVIYCDQYASLIPVSFVLGFYVTLVVHRWWNQYLCMPLPDALMCIVAGTVHGRDDRGRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKYWVPCVWFSSLAAQARREGRIRDNSALKLLLEELNVFRSKCGMLFHYDWISIPLVYTQVVTIAVYSYFLACLIGRQFLDPAQGYKDHTLDLCIPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDDLAMLEKDLYWDAAEARAPYTAATAFLLQQPSFQGSTFDIALAKEDMQFQRLDVVDGPLGEAHGDFLQRLLPAGAGTVGPLGRRLSLLRRKNSCVSEASTAASCSCAGAADGGGVECGCGDPLLDPSLREPELEPPACPEPPAPIPGPTPEPFTAVSIPGPRAPAPPWLPSPIGEEEESPA", "length": 508 }, "evidence": [ { "id": "F1SDY1", "url": "https://omabrowser.org/oma/group/F1SDY1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BF86-1", "protein_name": "Bestrophin-2", "gene_name": "BEST2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTVTYTARVAKARFGGFSKLLLLWRGSIYKLLWRELLCFLGLFMALSAAYRFVLTEEQKRYFEKLVLYCDRYASLIPVSFVLGFYVTLVVHRWWNQYLSMPLTDALMCVVVGTVHGHDERGRLYRRTLMRYAGLSGVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKYWVPCVWFCNLAAQARREGRIRDNGAFKLLLEELNVFRSKCGMLFHYDWISVPLVYTQVVTIAVYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRCFQVSMLAVDEMYDDLAMLEKDLYWDAAEARAPYTAATAFLMQQPSFQGSTFDITLAKEDMQFQRQDGLEAPLNEAHGDFLQRLLPVGTGMGTGGLLGRRVPLLRRKNSHVSEESMAASCACAGAPDGAVPECGCEGPLVDLGQPEPESEPITGPESPALVPAPRAPSEPLTVVPLSGTRGPAPPWLPSPIGEEEESLA", "length": 512 }, "evidence": [ { "id": "F1SDY1", "url": "https://omabrowser.org/oma/group/F1SDY1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BGM5-1", "protein_name": "Bestrophin-2", "gene_name": "Best2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGLYMALSAAYRFLLAEEQKRYFEKLVIYCDQYASLIPVSFVLGFYVTLVVHRWWNQYLCMPLPDALMCIVAGTVHGRDDRGRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKYWVPCVWFSSLAAQARREGRIRDNSALKLLLEELNVFRSKCGMLFHYDWISIPLVYTQVVTIAVYSYFLACLIGRQFLDPAQGYKDHTLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDDLAMLEKDLYWDAAEARAPYTAATAFLLQQPSFQGSTFDIALAKEDMQFQRLDGVDGPLGEVHGDFLQRLLPAGAGSVGPLGRRLSLLRRKNSCVSEASTAASCGCAGAADGGGVECGCGDPLLDPSLREPELEPPACPEPPAPIPGPTPEPFTTVSIPGPRAPAPPWLPSPIGEEEESPA", "length": 508 }, "evidence": [ { "id": "F1SDY1", "url": "https://omabrowser.org/oma/group/F1SDY1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NFU1-1", "protein_name": "Bestrophin-2a", "gene_name": "BEST2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTVTYTARVANARFGGFSQLLLLWRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKRYFEKLVIYCDQYASLIPVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHGRDDRGRLYRRTLMRYAGLSAVLILRSVSTAVFKRFPTIDHVVEAGFMTREERKKFENLNSSYNKYWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQVVTIALYSYFLACLIGRQFLDPAQGYKDHDLDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDDLAVLEKDLYWDAAEARAPYTAATVFQLRQPSFQGSTFDITLAKEDMQFQRLDGLDGPMGEAPGDFLQRLLPAGAGMVAGGPLGRRLSFLLRKNSCVSEASTGASCSCAVVPEGAAPECSCGDPLLDPGLPEPEAPPPAGPEPLTLIPGPVEPFSIVTMPGPRGPAPPWLPSPIGEEEENLA", "length": 509 }, "evidence": [ { "id": "F1SDY1", "url": "https://omabrowser.org/oma/group/F1SDY1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VUM7-1", "protein_name": "Bestrophin homolog", "gene_name": "Best3", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTVSYTAEVATCSHFGCFWKLLMRWRASIYKIIWVDLLAFLSCFYFMAVIYRYALRDVDKPVFEDIVMYCHSYSNLIPLSFVLGFYVGIIIERWWNQYITVPWPDPLAVYVSALVRGQDEHGRLMRRTIMRYVCLALTMVLSMISPVIKRRFPTYDQLIEVGLLNANEANIMKAMDVKFPKHPKYWMPIVWAASIVTRARKEGRIWDDFSLKSMIDELNKFRAGCNMLIHYDTISVPLVYTQVVTLAVYSYFVASIFGHQWIDRDIKHYNNIVSYYFPLFSTLEFFFFMGWLKVAETLICPFGDDDDDFELNWLIDRNLQVSYLIVDEMHNDHPQLVRDQYWDEVFPAELPYAVESDRAEHPEASTARLGIPKVVPVTMTKSEVSLENDFTEFDDEDEYNPEVTIRFARREFSWSKSSVSVSYSYDNQSIDTLDEKVDEENEGDTRTLDSRNKDDFDRLKEKRDRERVNRQMQQAALAMELIKGDLASNGGSARSSRTNVPQKNSDVQTDRSYLSQKKRKEEDTDNDKDSDESKK", "length": 535 }, "evidence": [ { "id": "F1SDY1", "url": "https://omabrowser.org/oma/group/F1SDY1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ], "pmid": "" }, { "name": "chloride channel complex", "id": "GO:0034707", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034707", "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "chloride channel activity", "id": "GO:0005254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005254", "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ], "pmid": "" }, { "name": "intracellularly ligand-gated monoatomic ion channel activity", "id": "GO:0005217", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005217", "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ], "pmid": "" }, { "name": "ligand-gated monoatomic cation channel activity", "id": "GO:0099094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099094", "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ], "pmid": "" }, { "name": "bicarbonate channel activity", "id": "GO:0160133", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160133", "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chloride transmembrane transport", "id": "GO:1902476", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902476", "evidence": [ { "database": "UniProtKB", "id": "F1SDY1", "url": "https://www.uniprot.org/uniprotkb/F1SDY1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29823", "name": "", "equation": "chloride(in) = chloride(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29823", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29823" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDY3-1", "uniprot_ac": "F1SDY3", "uniprot_id": "F1SDY3_PIG", "mass": { "chemical_mass": 40096.0, "monoisotopic_mass": 40096.0 }, "refseq": {}, "gene_names": [ { "name": "DNASE2", "type": "recommended", "evidence": [ { "id": "F1SDY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY3" } ] } ], "protein_names": [ { "name": "Deoxyribonuclease-2-alpha", "type": "recommended", "evidence": [ { "id": "F1SDY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY3/entry#names_and_taxonomy" } ] }, { "name": "3.1.22.1", "type": "synonym", "evidence": [ { "id": "F1SDY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY3/entry#names_and_taxonomy" } ] }, { "name": "Acid DNase", "type": "synonym", "evidence": [ { "id": "F1SDY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY3/entry#names_and_taxonomy" } ] }, { "name": "Deoxyribonuclease II alpha", "type": "synonym", "evidence": [ { "id": "F1SDY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY3/entry#names_and_taxonomy" } ] }, { "name": "Lysosomal DNase II", "type": "synonym", "evidence": [ { "id": "F1SDY3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Hydrolyzes DNA under acidic conditions with a preference for double-stranded DNA. Plays a major role in the clearance of nucleic acids generated through apoptosis, hence preventing autoinflammation. Necessary for proper fetal development and for definitive erythropoiesis in fetal liver and bone marrow, where it degrades nuclear DNA expelled from erythroid precursor cells.", "evidence": [ { "database": "UniProtKB", "id": "F1SDY3", "url": "https://www.uniprot.org/uniprotkb/F1SDY3#function" }, { "database": "UniProtKB", "id": "RU369111", "url": "https://www.uniprot.org/uniprotkb/RU369111#function" }, { "database": "UniProtKB", "id": "ARBA00045381", "url": "https://www.uniprot.org/uniprotkb/ARBA00045381#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDY3", "url": "https://www.uniprot.org/uniprotkb/F1SDY3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNASE2", "url": "https://www.uniprot.org/uniprotkb/F1SDY3", "locus": { "chromosome": "2", "start_pos": 66152855, "end_pos": 66149862, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013731", "url": "https://www.ensembl.org/id/ENSSSCG00000013731" } ] } } ], "crossref": [ { "id": "F1SDY3", "url": "https://alphafold.ebi.ac.uk/entry/F1SDY3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013731", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013731", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YLMYNDE", "url": "https://omabrowser.org/oma/group/YLMYNDE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10858", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10858", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10858:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10858:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03265", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03265", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-432720", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432720", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDY3", "url": "https://www.uniprot.org/uniprotkb/F1SDY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDY3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDY3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATLSPLLLAALLWVPVGTLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEESGGWRDGAGSINSSTGALGRSLLPLYRNTSQLAFLLYNDQPPKYRGSQHSNRGHTKGVLLLDQEGGFWLIHSVPNFPPPSSSAAYSWPPSARTYGQTLICVSFPLTQFLNISRQLTYTYPMVYDYKLEGDFARKFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNLQVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKWCVAPERPWTCVGDMNRNKREEHRGGGTLCAQLPALWKAFKPLVKAWEPCEKENRAFSPRSPAKD", "length": 363, "header": "tr|F1SDY3-1|F1SDY3_PIG Isoform 1 of Deoxyribonuclease-2-alpha OS=Sus scrofa OX=9823 GN=DNASE2 PE=3 SV=2 CANONICAL=F1SDY3-1" }, "isoforms": [ { "isoform_ac": "F1SDY3-1", "url": "https://www.uniprot.org/uniprotkb/F1SDY3/entry#F1SDY3-1", "sequence": { "sequence": "MATLSPLLLAALLWVPVGTLTCYGDSGQPVDWFVVYKLPAHSSPGDVAQSGLRYKYLDEESGGWRDGAGSINSSTGALGRSLLPLYRNTSQLAFLLYNDQPPKYRGSQHSNRGHTKGVLLLDQEGGFWLIHSVPNFPPPSSSAAYSWPPSARTYGQTLICVSFPLTQFLNISRQLTYTYPMVYDYKLEGDFARKFPYLEEVVKGHHVLQEPWNSSVTLTSKAGASFQSFAKCGNFGDDLYSGWLAEALGSNLQVQFWQRSAGILPSNCSGVQHVLDVTQIAFPGPAGPNFNATEDHSKWCVAPERPWTCVGDMNRNKREEHRGGGTLCAQLPALWKAFKPLVKAWEPCEKENRAFSPRSPAKD", "length": 363, "header": "tr|F1SDY3-1|F1SDY3_PIG Isoform 1 of Deoxyribonuclease-2-alpha OS=Sus scrofa OX=9823 GN=DNASE2 PE=3 SV=2 CANONICAL=F1SDY3-1" }, "locus": { "chromosome": "2", "start_pos": 66152695, "end_pos": 66150164, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015005.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015005.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014601.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014601.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDY3", "url": "https://www.uniprot.org/uniprotkb/F1SDY3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-432720", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432720", "resource": "Reactome", "description": "Lysosome Vesicle Biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "O00115-1", "protein_name": "Deoxyribonuclease-2-alpha", "gene_name": "DNASE2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIPLLLAALLCVPAGALTCYGDSGQPVDWFVVYKLPALRGSGEAAQRGLQYKYLDESSGGWRDGRALINSPEGAVGRSLQPLYRSNTSQLAFLLYNDQPPQPSKAQDSSMRGHTKGVLLLDHDGGFWLVHSVPNFPPPASSAAYSWPHSACTYGQTLLCVSFPFAQFSKMGKQLTYTYPWVYNYQLEGIFAQEFPDLENVVKGHHVSQEPWNSSITLTSQAGAVFQSFAKFSKFGDDLYSGWLAAALGTNLQVQFWHKTVGILPSNCSDIWQVLNVNQIAFPGPAGPSFNSTEDHSKWCVSPKGPWTCVGDMNRNQGEEQRGGGTLCAQLPALWKAFQPLVKNYQPCNGMARKPSRAYKI", "length": 360 }, "evidence": [ { "id": "F1SDY3", "url": "https://omabrowser.org/oma/group/F1SDY3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1SDY3", "url": "https://www.uniprot.org/uniprotkb/F1SDY3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "apoptotic cell clearance", "id": "GO:0043277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043277", "evidence": [ { "database": "UniProtKB", "id": "F1SDY3", "url": "https://www.uniprot.org/uniprotkb/F1SDY3" } ], "pmid": "" }, { "name": "apoptotic DNA fragmentation", "id": "GO:0006309", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006309", "evidence": [ { "database": "UniProtKB", "id": "F1SDY3", "url": "https://www.uniprot.org/uniprotkb/F1SDY3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "deoxyribonuclease II activity", "id": "GO:0004531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004531", "evidence": [ { "database": "UniProtKB", "id": "F1SDY3", "url": "https://www.uniprot.org/uniprotkb/F1SDY3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 213, "end_pos": 215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-432706", "name": "trans-Golgi Network Lysosome Vesicle Destined Membrane Coat Assembly", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi membrane, cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-432706", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432706" } ] }, { "id": "R-SSC-432707", "name": "trans-Golgi Network Lysosomal Vesicle Scission", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-432707", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432707" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDY3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 363, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDY3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDY3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 }, { "start_pos": 213, "end_pos": 215 }, { "start_pos": 267, "end_pos": 269 }, { "start_pos": 291, "end_pos": 293 }, { "start_pos": 72, "end_pos": 74 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDY9-1", "uniprot_ac": "F1SDY9", "uniprot_id": "F1SDY9_PIG", "mass": { "chemical_mass": 130606.0, "monoisotopic_mass": 130606.0 }, "refseq": {}, "gene_names": [ { "name": "PTPN21", "type": "recommended", "evidence": [ { "id": "F1SDY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" } ] } ], "protein_names": [ { "name": "Tyrosine-protein phosphatase non-receptor type", "type": "recommended", "evidence": [ { "id": "F1SDY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY9/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.48", "type": "synonym", "evidence": [ { "id": "F1SDY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDY9", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTPN21", "url": "https://www.uniprot.org/uniprotkb/F1SDY9", "locus": { "chromosome": "7", "start_pos": 110373530, "end_pos": 110453812, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002425", "url": "https://www.ensembl.org/id/ENSSSCG00000002425" } ] } } ], "crossref": [ { "id": "F1SDY9", "url": "https://alphafold.ebi.ac.uk/entry/F1SDY9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002425", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002425", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13188", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13188", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17192", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17192", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45706", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45706", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45706:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45706:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00102", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00102", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09379", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09379", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "10684", "url": "https://www.rhea-db.org/rhea/10684", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDY9", "url": "https://www.uniprot.org/uniprotkb/F1SDY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDY9-1", "url": "https://www.uniprot.org/uniprotkb/F1SDY9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLPFGLKLKRTRRYTVSSKSCLVARIQLLNNEFVEFTLSVESTGQESLEAVAQRLELREITYFSLWYYNKQNQRRWVDLEKPLKKQLDKYALEPTVYFGVVFYVPSVSQLQQEITRYQYYLQLKKDILEGNIPCTLEQAIQLAGLAVQADFGDFDQYESQDFLQKFALLPVEWLQDEKVLEEATQKVALLHQKYRGLTAPDAEMLYMQEVERMDGYGEESYPAKDSQGSDISIGACLEGIFVKHKNGRPPVVFEDLETAKYVWRLCVARHKFYRLNQCSLQTQPVIVNPIRRRSSSRMSLPKPQPYVMAPPPQLHYNGHYTEPYTSSQDNLFVTNQNGYYCHSQTSLDRAQIDLSGRIRNGSVYSAQSTNSLNNPQPYLQPSPMSSNPSITGSDVMRPDYVPSHRHSALIPPSYRPTPDYETVMKQLRRGLAPAERQSHSLRNLNIGNSYAYSRPDALVYSQPEIREHAHFTSPQSAHYPFSLNYSFHSQAPYPYPVERRPVVGAVSVPELTNVQLQAQEYPAPNIMRTQVYRPPPPYPYPRPANSTPDLSRHLYISSSNPDLITRRVHHSVQTFQEDSLPVAHSLQEVSEPLTSARHAQLQKRNSIEIAGLTHGLDGLRLKERTMSASAADVAPRAVSAGSQPNVVIERTKREEPDEQESLRYGHKKSLSDATMLIHSSEEEEEEEEEEDPEEEPSARAHPSPPVPEPRAAYSQEAPPSCPRAPGPLHILEPQSHVPEAERRGRDGSPVHVQADAQRPRRDGLLTPSMSESDLTTSGRYRARRDSLKKRPVSDLLSGKKNIVEGLPPLGGMKKNRVDAKKIGPLKLAALNGLSLSRLPLPDEGREVPARATNDERCKILEQRLEQGMVFTEYERILKKRLVDECSTARLPENAERNRFQDVLPYDDARVELVPTKENNTGYINASHIKVSVSGIEWDYIATQGPLQNTCQDFWQMVWEQGIAIIAMVTAEEEGGREKSFRYWPRLGSRHNTVTYGRFKITTRFRTDSGCYATTGLKMKHLLTGQERTVWHLQYTDWPEHGCPEDLKGFLSYLEEIQSVRRHTNSTSEPKSPNPPLLVHCSAGVGRTGVVILSEIMIACLEHNEVLDIPRVLDMLRQQRMMMVQTLCQYTFVYRVLIQFLKSSRLI", "length": 1147, "header": "tr|F1SDY9-1|F1SDY9_PIG Isoform 1 of Tyrosine-protein phosphatase non-receptor type OS=Sus scrofa OX=9823 GN=PTPN21 PE=3 SV=4 CANONICAL=F1SDY9-1" }, "isoforms": [ { "isoform_ac": "F1SDY9-1", "url": "https://www.uniprot.org/uniprotkb/F1SDY9/entry#F1SDY9-1", "sequence": { "sequence": "MPLPFGLKLKRTRRYTVSSKSCLVARIQLLNNEFVEFTLSVESTGQESLEAVAQRLELREITYFSLWYYNKQNQRRWVDLEKPLKKQLDKYALEPTVYFGVVFYVPSVSQLQQEITRYQYYLQLKKDILEGNIPCTLEQAIQLAGLAVQADFGDFDQYESQDFLQKFALLPVEWLQDEKVLEEATQKVALLHQKYRGLTAPDAEMLYMQEVERMDGYGEESYPAKDSQGSDISIGACLEGIFVKHKNGRPPVVFEDLETAKYVWRLCVARHKFYRLNQCSLQTQPVIVNPIRRRSSSRMSLPKPQPYVMAPPPQLHYNGHYTEPYTSSQDNLFVTNQNGYYCHSQTSLDRAQIDLSGRIRNGSVYSAQSTNSLNNPQPYLQPSPMSSNPSITGSDVMRPDYVPSHRHSALIPPSYRPTPDYETVMKQLRRGLAPAERQSHSLRNLNIGNSYAYSRPDALVYSQPEIREHAHFTSPQSAHYPFSLNYSFHSQAPYPYPVERRPVVGAVSVPELTNVQLQAQEYPAPNIMRTQVYRPPPPYPYPRPANSTPDLSRHLYISSSNPDLITRRVHHSVQTFQEDSLPVAHSLQEVSEPLTSARHAQLQKRNSIEIAGLTHGLDGLRLKERTMSASAADVAPRAVSAGSQPNVVIERTKREEPDEQESLRYGHKKSLSDATMLIHSSEEEEEEEEEEDPEEEPSARAHPSPPVPEPRAAYSQEAPPSCPRAPGPLHILEPQSHVPEAERRGRDGSPVHVQADAQRPRRDGLLTPSMSESDLTTSGRYRARRDSLKKRPVSDLLSGKKNIVEGLPPLGGMKKNRVDAKKIGPLKLAALNGLSLSRLPLPDEGREVPARATNDERCKILEQRLEQGMVFTEYERILKKRLVDECSTARLPENAERNRFQDVLPYDDARVELVPTKENNTGYINASHIKVSVSGIEWDYIATQGPLQNTCQDFWQMVWEQGIAIIAMVTAEEEGGREKSFRYWPRLGSRHNTVTYGRFKITTRFRTDSGCYATTGLKMKHLLTGQERTVWHLQYTDWPEHGCPEDLKGFLSYLEEIQSVRRHTNSTSEPKSPNPPLLVHCSAGVGRTGVVILSEIMIACLEHNEVLDIPRVLDMLRQQRMMMVQTLCQYTFVYRVLIQFLKSSRLI", "length": 1147, "header": "tr|F1SDY9-1|F1SDY9_PIG Isoform 1 of Tyrosine-protein phosphatase non-receptor type OS=Sus scrofa OX=9823 GN=PTPN21 PE=3 SV=4 CANONICAL=F1SDY9-1" }, "locus": { "chromosome": "7", "start_pos": 110449557, "end_pos": 110377099, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002694.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002694.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002625.5", "url": "https://www.ensembl.org/id/ENSSSCP00000002625.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDY9", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SDY9", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SDY9", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of hippo signaling", "id": "GO:0035332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035332", "evidence": [ { "database": "UniProtKB", "id": "F1SDY9", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein tyrosine phosphatase activity", "id": "GO:0004725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004725", "evidence": [ { "database": "UniProtKB", "id": "F1SDY9", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1065, "end_pos": 1067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" }, { "start_pos": 485, "end_pos": 487, "annotation": "n_glycosylation_sequon" }, { "start_pos": 546, "end_pos": 548, "annotation": "n_glycosylation_sequon" }, { "start_pos": 919, "end_pos": 921, "annotation": "n_glycosylation_sequon" }, { "start_pos": 925, "end_pos": 927, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10684", "name": "", "equation": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10684", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10684" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SDY9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1147, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SDY9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SDY9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" }, { "id": "PS50057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FERM", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 313, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" }, { "id": "PS50056", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50056" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine specific protein phosphatases", "eco_id": "ECO_0000259", "start_pos": 1051, "end_pos": 1131, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDY9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDY9" }, { "id": "PS50055", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50055" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine-protein phosphatase", "eco_id": "ECO_0000259", "start_pos": 870, "end_pos": 1140, "start_aa": "Val", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1065, "end_pos": 1067 }, { "start_pos": 361, "end_pos": 363 }, { "start_pos": 485, "end_pos": 487 }, { "start_pos": 546, "end_pos": 548 }, { "start_pos": 919, "end_pos": 921 }, { "start_pos": 925, "end_pos": 927 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SDZ2-1", "uniprot_ac": "F1SDZ2", "uniprot_id": "F1SDZ2_PIG", "mass": { "chemical_mass": 77221.0, "monoisotopic_mass": 77221.0 }, "refseq": {}, "gene_names": [ { "name": "GALC", "type": "recommended", "evidence": [ { "id": "F1SDZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" } ] } ], "protein_names": [ { "name": "Galactocerebrosidase", "type": "recommended", "evidence": [ { "id": "F1SDZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2/entry#names_and_taxonomy" } ] }, { "name": "3.2.1.46", "type": "synonym", "evidence": [ { "id": "F1SDZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2/entry#names_and_taxonomy" } ] }, { "name": "Galactocerebroside beta-galactosidase", "type": "synonym", "evidence": [ { "id": "F1SDZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2/entry#names_and_taxonomy" } ] }, { "name": "Galactosylceramidase", "type": "synonym", "evidence": [ { "id": "F1SDZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2/entry#names_and_taxonomy" } ] }, { "name": "Galactosylceramide beta-galactosidase", "type": "synonym", "evidence": [ { "id": "F1SDZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Hydrolyzes the galactose ester bonds of glycolipids such as galactosylceramide and galactosylsphingosine. Enzyme with very low activity responsible for the lysosomal catabolism of galactosylceramide, a major lipid in myelin, kidney and epithelial cells of small intestine and colon.", "evidence": [ { "database": "UniProtKB", "id": "F1SDZ2", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2#function" }, { "database": "UniProtKB", "id": "ARBA00055902", "url": "https://www.uniprot.org/uniprotkb/ARBA00055902#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SDZ2", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GALC", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2", "locus": { "chromosome": "7", "start_pos": 109894578, "end_pos": 109961413, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027865", "url": "https://www.ensembl.org/id/ENSSSCG00000027865" } ] } } ], "crossref": [ { "id": "ENSSSCG00000027865", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027865", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001286", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001286", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013785", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013785", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15172", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15172", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15172:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15172:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21708", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21708", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9840310", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "43412", "url": "https://www.rhea-db.org/rhea/43412", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "43908", "url": "https://www.rhea-db.org/rhea/43908", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SDZ2", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SDZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAERRLQASRQRRVKVMTAAAGSAGQVAVTLLLCALLAPGSSYVLDDSDGLGREFDGIGAVSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYALDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFNWPYVNLQLTAYYVMTWIVGAKHYHDLDIDYIGIWNERAFDANYIKVLRRMLNYQGLQQVKIIASDNLWEPISASMLLDSELMKAIDVIGAHYPGTRTVKDARLTEKKLWSSEDFSTLNNDVGAGCWGRILNQNYINGYMTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYAVEAPIWISAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIVETMSHKHSLCIRPFLPYFNVSHQFATFVLKGSFREIPELQVWYTKLGKPSKRYLFKQLDSLWLLDSSGSFTLELHEDELFTFTTLTTGNKGSYPPPPKSQPFPCVYEDDFNVDYPYFSEAPNFADQTGVFEYFMNIEDPGEHRFTLRQVLNQRPITWAADAFNTISVIGDYKWSNLTIKCDVYIETSETGGVFIAGRVNKGGILIRSARGVFFWIFANGSYQVTGDLAGWIIYTSGYADIKAKKWYTLTLTIKGGSSSGTLNGKLLWKNVSVNFPKNGWAAIGTHSFEFAQFDNFRVEATC", "length": 685, "header": "tr|F1SDZ2-1|F1SDZ2_PIG Isoform 1 of Galactocerebrosidase OS=Sus scrofa OX=9823 GN=GALC PE=3 SV=1 CANONICAL=F1SDZ2-1" }, "isoforms": [ { "isoform_ac": "F1SDZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2/entry#F1SDZ2-1", "sequence": { "sequence": "MAERRLQASRQRRVKVMTAAAGSAGQVAVTLLLCALLAPGSSYVLDDSDGLGREFDGIGAVSGGGATSRLLVNYPEPYRSQILDYLFKPNFGASLHILKVEIGGDGQTTDGTEPSHMHYALDENYFRGYEWWLMKEAKKRNPNITLIGLPWSFPGWLGKGFNWPYVNLQLTAYYVMTWIVGAKHYHDLDIDYIGIWNERAFDANYIKVLRRMLNYQGLQQVKIIASDNLWEPISASMLLDSELMKAIDVIGAHYPGTRTVKDARLTEKKLWSSEDFSTLNNDVGAGCWGRILNQNYINGYMTSTIAWNLVASYYEQLPYGRCGLMTAQEPWSGHYAVEAPIWISAHTTQFTQPGWYYLKTVGHLEKGGSYVALTDGLGNLTIIVETMSHKHSLCIRPFLPYFNVSHQFATFVLKGSFREIPELQVWYTKLGKPSKRYLFKQLDSLWLLDSSGSFTLELHEDELFTFTTLTTGNKGSYPPPPKSQPFPCVYEDDFNVDYPYFSEAPNFADQTGVFEYFMNIEDPGEHRFTLRQVLNQRPITWAADAFNTISVIGDYKWSNLTIKCDVYIETSETGGVFIAGRVNKGGILIRSARGVFFWIFANGSYQVTGDLAGWIIYTSGYADIKAKKWYTLTLTIKGGSSSGTLNGKLLWKNVSVNFPKNGWAAIGTHSFEFAQFDNFRVEATC", "length": 685, "header": "tr|F1SDZ2-1|F1SDZ2_PIG Isoform 1 of Galactocerebrosidase OS=Sus scrofa OX=9823 GN=GALC PE=3 SV=1 CANONICAL=F1SDZ2-1" }, "locus": { "chromosome": "7", "start_pos": 109961394, "end_pos": 109895180, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023979.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023979.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021318.1", "url": "https://www.ensembl.org/id/ENSSSCP00000021318.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SDZ2", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9840310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "resource": "Reactome", "description": "Glycosphingolipid catabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SDZ2", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1SDZ2", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "galactosylceramidase activity", "id": "GO:0004336", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004336", "evidence": [ { "database": "UniProtKB", "id": "F1SDZ2", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "galactosylceramide catabolic process", "id": "GO:0006683", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006683", "evidence": [ { "database": "UniProtKB", "id": "F1SDZ2", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 379, "end_pos": 381, "annotation": "n_glycosylation_sequon" }, { "start_pos": 403, "end_pos": 405, "annotation": "n_glycosylation_sequon" }, { "start_pos": 559, "end_pos": 561, "annotation": "n_glycosylation_sequon" }, { "start_pos": 602, "end_pos": 604, "annotation": "n_glycosylation_sequon" }, { "start_pos": 653, "end_pos": 655, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "43412", "name": "", "equation": "a D-galactosylceramide + H2O = an N-acyl-sphingoid base + D-galactose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "43412", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/43412" } ] }, { "id": "43908", "name": "", "equation": "beta-D-galactosyl-(1<->1)-sphing-4-enine + H2O = sphing-4-enine + D-galactose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "43908", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/43908" } ] }, { "id": "R-SSC-1606564", "name": "GALC hydrolyzes GalCer", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1606564", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1606564" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SDZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" }, { "id": "PF21708", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21708" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl hydrolase family 59 C-terminal lectin", "eco_id": "ECO_0000259", "start_pos": 509, "end_pos": 683, "start_aa": "Asp", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" }, { "id": "PF02057", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl hydrolase family 59 catalytic", "eco_id": "ECO_0000259", "start_pos": 55, "end_pos": 349, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SDZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SDZ2" }, { "id": "PF17387", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17387" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl hydrolase family 59 central", "eco_id": "ECO_0000259", "start_pos": 357, "end_pos": 472, "start_aa": "Tyr", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 }, { "start_pos": 379, "end_pos": 381 }, { "start_pos": 403, "end_pos": 405 }, { "start_pos": 559, "end_pos": 561 }, { "start_pos": 602, "end_pos": 604 }, { "start_pos": 653, "end_pos": 655 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SE08-1", "uniprot_ac": "F1SE08", "uniprot_id": "F1SE08_PIG", "mass": { "chemical_mass": 62885.0, "monoisotopic_mass": 62885.0 }, "refseq": { "ac": "XP_020955213", "name": "serine palmitoyltransferase 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955213" }, "gene_names": [ { "name": "SPTLC2", "type": "recommended", "evidence": [ { "id": "F1SE08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ] }, { "name": "SPTLC2", "type": "synonym", "evidence": [ { "id": "XP_020955213", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955213" } ] } ], "protein_names": [ { "name": "serine C-palmitoyltransferase", "type": "recommended", "evidence": [ { "id": "F1SE08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE08/entry#names_and_taxonomy" } ] }, { "name": "2.3.1.50", "type": "synonym", "evidence": [ { "id": "F1SE08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE08/entry#names_and_taxonomy" } ] }, { "name": "serine palmitoyltransferase 2", "type": "synonym", "evidence": [ { "id": "XP_020955213", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955213" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPTLC2", "url": "https://www.uniprot.org/uniprotkb/F1SE08", "locus": { "chromosome": "7", "start_pos": 100544478, "end_pos": 100638905, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002404", "url": "https://www.ensembl.org/id/ENSSSCG00000002404" } ] } } ], "crossref": [ { "id": "F1SE08", "url": "https://alphafold.ebi.ac.uk/entry/F1SE08", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002404", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002404", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06454", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06454", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100158010", "url": "https://www.ncbi.nlm.nih.gov/gene/100158010", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015424", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015424", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158010", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158010", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QPRANGC", "url": "https://omabrowser.org/oma/group/QPRANGC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SE08", "url": "https://www.orthodb.org/?gene=F1SE08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13693", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13693", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13693:SF79", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13693:SF79", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00155", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00155", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660661", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020955213", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955213", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE08-1", "url": "https://www.uniprot.org/uniprotkb/F1SE08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMRSGPEGCCRRPVRANGCVANGEVRNGYVRSSAAAAAAAAGQIHHVTQNGGLYKRPFNEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRHWRIEKCHHATEREEQQDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIKDVINMGSYNYLGFARNTGACQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVASFLGVEAAMAYGMGFATNSMNIPALVSKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVDYFGLDPEDVDIMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLSPPVVEQIITSMKCIMGQDGTTLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNVGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSRHRLVPLLDRPFDETTYEETED", "length": 561, "header": "tr|F1SE08-1|F1SE08_PIG Isoform 1 of serine C-palmitoyltransferase OS=Sus scrofa OX=9823 GN=SPTLC2 PE=3 SV=3 CANONICAL=F1SE08-1" }, "isoforms": [ { "isoform_ac": "F1SE08-1", "url": "https://www.uniprot.org/uniprotkb/F1SE08/entry#F1SE08-1", "sequence": { "sequence": "MMRSGPEGCCRRPVRANGCVANGEVRNGYVRSSAAAAAAAAGQIHHVTQNGGLYKRPFNEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRHWRIEKCHHATEREEQQDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIKDVINMGSYNYLGFARNTGACQEAAAKVLEEYGVGVCSTRQEIGNLDKHEELEKLVASFLGVEAAMAYGMGFATNSMNIPALVSKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVDYFGLDPEDVDIMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLSPPVVEQIITSMKCIMGQDGTTLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNVGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSRHRLVPLLDRPFDETTYEETED", "length": 561, "header": "tr|F1SE08-1|F1SE08_PIG Isoform 1 of serine C-palmitoyltransferase OS=Sus scrofa OX=9823 GN=SPTLC2 PE=3 SV=3 CANONICAL=F1SE08-1" }, "locus": { "chromosome": "7", "start_pos": 100638871, "end_pos": 100549341, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064054.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064054.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045377.1", "url": "https://www.ensembl.org/id/ENSSSCP00000045377.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158010", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158010", "resource": "KEGG Pathway" }, { "id": "R-SSC-1660661", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "resource": "Reactome", "description": "Sphingolipid de novo biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "O15270-1", "protein_name": "Serine palmitoyltransferase 2", "gene_name": "SPTLC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEPGGCCCRRTVRANGCVANGEVRNGYVRSSAAAAAAAAAGQIHHVTQNGGLYKRPFNEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRYWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGARVDIMERQSHDYNWSFKYTGNIIKGVINMGSYNYLGFARNTGSCQEAAAKVLEEYGAGVCSTRQEIGNLDKHEELEELVARFLGVEAAMAYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSLSPPVVEQIITSMKCIMGQDGTSLGKECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSRHRLVPLLDRPFDETTYEETED", "length": 562 }, "evidence": [ { "id": "F1SE08", "url": "https://omabrowser.org/oma/group/F1SE08/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P40970-1", "protein_name": "Serine palmitoyltransferase 2", "gene_name": "LCB2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSTPANYTRVPLCEPEELPDDIQKENEYGTLDSPGHLYQVKSRHGKPLPEPVVDTPPYYISLLTYLNYLILIILGHVHDFLGMTFQKNKHLDLLEHDGLAPWFSNFESFYVRRIKMRIDDCFSRPTTGVPGRFIRCIDRISHNINEYFTYSGAVYPCMNLSSYNYLGFAQSKGQCTDAALESVDKYSIQSGGPRAQIGTTDLHIKAEKLVARFIGKEDALVFSMGYGTNANLFNAFLDKKCLVISDELNHTSIRTGVRLSGAAVRTFKHGDMVGLEKLIREQIVLGQPKTNRPWKKILICAEGLFSMEGTLCNLPKLVELKKKYKCYLFIDEAHSIGAMGPTGRGVCEIFGVDPKDVDILMGTFTKSFGAAGGYIAADQWIIDRLRLDLTTVSYSESMPAPVLAQTISSLQTISGEICPGQGTERLQRIAFNSRYLRLALQRLGFIVYGVADSPVIPLLLYCPSKMPAFSRMMLQRRIAVVVVAYPATPLIESRVRFCMSASLTKEDIDYLLRHVSEVGDKLNLKSNSGKSSYDGKRQRWDIEEVIRRTPEDCKDDKYFVN", "length": 561 }, "evidence": [ { "id": "F1SE08", "url": "https://omabrowser.org/oma/group/F1SE08/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P97363-1", "protein_name": "Serine palmitoyltransferase 2", "gene_name": "Sptlc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRPEPGGCCCRRPMRANGCVKNGEVRNGYLRSSTATVAAAGQIHHVTENGGLYKRPFNEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRHWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGAKVDIMERKSHDYNWSFKYTGNIIKGVINMGSYNYLGFARNTGSCQEAAAEVLKEYGAGVCSTRQEIGNLDKHEELEKLVARFLGVEAAMTYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSMSPPVMEQIITSMKCIMGQDGTSLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSRHRLVPLLDRPFDETTYEETED", "length": 560 }, "evidence": [ { "id": "F1SE08", "url": "https://omabrowser.org/oma/group/F1SE08/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3B7D2-1", "protein_name": "Serine palmitoyltransferase 2", "gene_name": "Sptlc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRPEPGGCCCRRPMRANGCVKNGEVRNGYLRSSTATIAAAGQIHHITENGGLYKRPFNEAFEETPMLVAVLTYVGYGVLTLFGYLRDFLRHWRIEKCHHATEREEQKDFVSLYQDFENFYTRNLYMRIRDNWNRPICSVPGAKVDIMERQSHDYNWSFKYTGNIIKGVINMGSYNYLGFARNTGSCQEAAAEVLKTYGAGVCSTRQEIGNLDKHEELEKLVARFLGVEAALTYGMGFATNSMNIPALVGKGCLILSDELNHASLVLGARLSGATIRIFKHNNMQSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEAHSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAVYATSMSPPVMEQIITSMKCIMGQDGTSLGKECIQQLAENTRYFRRRLKEMGFIIYGNEDSPVVPLMLYMPAKIGAFGREMLKRNIGVVVVGFPATPIIESRARFCLSAAHTKEILDTALKEIDEVGDLLQLKYSRHRPLPLLDRPFDETTYEETED", "length": 560 }, "evidence": [ { "id": "F1SE08", "url": "https://omabrowser.org/oma/group/F1SE08/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54EX5-1", "protein_name": "Serine palmitoyltransferase 2", "gene_name": "sptB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEDKEDVENVDDVGYLPILFLYIAYAFIIFNGKLAEFIGKLKGERYLHTPEGYAPLFVEFEYFYQRRMYGRIKDAWDRPINSIAGAWIDVMPRASKHYSQRLELTGGKTIKCLNLGSYNYLGFAQNEGPVADKVIDSIYKYGVYTGSTSAEVGLSEPQRDLENLTARFVGKEDAIVFEMGFATNSGTLPALIGKGGLIISDSLNHASLATGCKNTGCKVKVFRHNDSKHLEEVIRESIIQGQPRTHRPWTMILIIIEGIYSMEGEVANLPEILAIKKKYKCYLYIDEAHSIGALGKTGRGIVDYYGIDPKEIDILMGTYTKSFGAIGGYVASDKSLIDHLRQSSFSQVYANSMSPVCAVQALEALRVIMGEDGTDTGAKKLKQLHDNSNYFREKIREMGFVILGNKDSPVIPLMLFNPAKLSAFSRLCLEKHIAVVVVGYPATPLTEPRTRFCISASHTIEDLDWALRQIDEIGDLITLKFHKGKYLKSK", "length": 490 }, "evidence": [ { "id": "F1SE08", "url": "https://omabrowser.org/oma/group/F1SE08/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9LSZ9-1", "protein_name": "Long chain base biosynthesis protein 2a", "gene_name": "LCB2a", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITIPYLTAVSTYFSYGLLFAFGQLRDFFRRFIDWWFTSNLQGYAPICLGHEDFYIRRLYHRIQDCFERPISSAPDAWFDVVERYSNDNNKTLKRTTKTSRCLNLGSYNYLGFGSFDEYCTPRVIESLKKFSASTCSSRVDAGTTSVHAELEECVTRFVGKPAAVVFGMGYATNSAIIPVLIGKGGLIISDSLNHSSIVNGARGSGATIRVFQHNTPSHLERVLREQIAEGQPRTHRPWKKIIVVVEGIYSMEGEICHLPEVVAICKKYKAYVYLDEAHSIGAIGKTGKGICELLGVDTADVDVMMGTFTKSFGSCGGYIAGSKELIQYLKHQCPAHLYATSIPTPSAQQIISAIKVILGEDGSNRGAQKLARIRENSNFFRAELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQKVAVVVVGFPATPLLLARARICISASHSREDLIRALKVISKVGDLSGIKYFPAEPKKIEQSKNDIKLD", "length": 489 }, "evidence": [ { "id": "F1SE08", "url": "https://omabrowser.org/oma/group/F1SE08/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9V3F2-1", "protein_name": "serine C-palmitoyltransferase", "gene_name": "lace", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGNFDGDSGTVFEQSYATTNGNGKVPNGNGAADLSAPEKQELLRKFSAPAYTEIRTRRCQPKPANDAQSPSSINYHPEKKSIPNGHASILDQESKPNQAEGKLSPELEHFQKTSFEEVPLHTACLTYLGFYLLMILGYINQLLFVPKVATEKGRDGYVALYDAFESFYSRYVYRRIKDCWNRPICSVPGDELTLKDRVTDDYGWSFKFTGTETRCLNLGSYNYLGFAAATGQCADDSEESARSSGLAYCSSRCELGDNEQLQELEALTARYFGVEDAIVFGMGFATNALNLPSLLGPNSLVISDEKNHASIILGLRLSGATTKVFKHNNMRDLERVLRQGVCYGNPKKGGQPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLDEAHSVGAMGSRGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHAHCYAASISPPIAQQILTSMKTIMGEDGTDIGRKKIHQLARNTRYFRRRLAQLGVITYGHEDSPVVPMLVYLFSKIGAVVRTLTTRHIAAVGAGFPATPIMEGRIRFCLSAAHTKEQLDFALEAIDEIADDLGLKYSRKPRDPNPVIY", "length": 597 }, "evidence": [ { "id": "F1SE08", "url": "https://omabrowser.org/oma/group/F1SE08/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "sphingomyelin biosynthetic process", "id": "GO:0006686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006686", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "pmid": "" }, { "name": "glycosphingolipid biosynthetic process", "id": "GO:0006688", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006688", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "pmid": "" }, { "name": "ceramide biosynthetic process", "id": "GO:0046513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046513", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "pmid": "" }, { "name": "adipose tissue development", "id": "GO:0060612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060612", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "pmid": "" }, { "name": "sphingosine biosynthetic process", "id": "GO:0046512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046512", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine C-palmitoyltransferase activity", "id": "GO:0004758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004758", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "pmid": "" }, { "name": "pyridoxal phosphate binding", "id": "GO:0030170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030170", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "serine palmitoyltransferase complex", "id": "GO:0017059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017059", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "pmid": "" }, { "name": "cytoplasmic side of endoplasmic reticulum membrane", "id": "GO:0098554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098554", "evidence": [ { "database": "UniProtKB", "id": "F1SE08", "url": "https://www.uniprot.org/uniprotkb/F1SE08" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-428127", "name": "SPTLC complexes transfer acyl-CoA onto serine", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-428127", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-428127" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE08-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 561, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE08-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE08" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SE08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE08" }, { "id": "PF00155", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00155" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminotransferase class I/classII large", "eco_id": "ECO_0000259", "start_pos": 167, "end_pos": 527, "start_aa": "Lys", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 156, "end_pos": 158 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SE23-1", "uniprot_ac": "F1SE23", "uniprot_id": "F1SE23_PIG", "mass": { "chemical_mass": 24597.0, "monoisotopic_mass": 24597.0 }, "refseq": {}, "gene_names": [ { "name": "DKK4", "type": "recommended", "evidence": [ { "id": "F1SE23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE23" } ] } ], "protein_names": [ { "name": "Dickkopf WNT signaling pathway inhibitor 4", "type": "synonym", "evidence": [ { "id": "F1SE23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE23/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE23", "url": "https://www.uniprot.org/uniprotkb/F1SE23" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DKK4", "url": "https://www.uniprot.org/uniprotkb/F1SE23", "locus": { "chromosome": "17", "start_pos": 11390206, "end_pos": 11394436, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007029", "url": "https://www.ensembl.org/id/ENSSSCG00000007029" } ] } } ], "crossref": [ { "id": "F1SE23", "url": "https://alphafold.ebi.ac.uk/entry/F1SE23", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007029", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007029", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23013", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23013", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd23275", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23275", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR006796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12113:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12113:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04706", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04706", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21479", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21479", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21481", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21481", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3772470", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3772470", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SE23", "url": "https://www.uniprot.org/uniprotkb/F1SE23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE23-1", "url": "https://www.uniprot.org/uniprotkb/F1SE23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVVVLLGLGWLCTPLGALVLDFNNIKSSADVQGAWKGSQCVSDEDCSTRKFCLKPQDEKPFCATCRGLRRRCQRPAMCCPGMLCVNDVCTTMEDATPILERQIDDRDDADTKGTTEHPVQENKPKRKPNIKKSQGSKGQEGESCLRTSDCGPGLCCARHFWTKICKPVLLEGQVCSRRGHKDTAQAPEIFQRCDCGPGLSCRGQVAGNRQHARLRVCQKIKL", "length": 223, "header": "tr|F1SE23-1|F1SE23_PIG Isoform 1 of Dickkopf WNT signaling pathway inhibitor 4 OS=Sus scrofa OX=9823 GN=DKK4 PE=3 SV=4 CANONICAL=F1SE23-1" }, "isoforms": [ { "isoform_ac": "F1SE23-1", "url": "https://www.uniprot.org/uniprotkb/F1SE23/entry#F1SE23-1", "sequence": { "sequence": "MAVVVLLGLGWLCTPLGALVLDFNNIKSSADVQGAWKGSQCVSDEDCSTRKFCLKPQDEKPFCATCRGLRRRCQRPAMCCPGMLCVNDVCTTMEDATPILERQIDDRDDADTKGTTEHPVQENKPKRKPNIKKSQGSKGQEGESCLRTSDCGPGLCCARHFWTKICKPVLLEGQVCSRRGHKDTAQAPEIFQRCDCGPGLSCRGQVAGNRQHARLRVCQKIKL", "length": 223, "header": "tr|F1SE23-1|F1SE23_PIG Isoform 1 of Dickkopf WNT signaling pathway inhibitor 4 OS=Sus scrofa OX=9823 GN=DKK4 PE=3 SV=4 CANONICAL=F1SE23-1" }, "locus": { "chromosome": "17", "start_pos": 11394268, "end_pos": 11390206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007698.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007698.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007491.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007491.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SE23", "url": "https://www.uniprot.org/uniprotkb/F1SE23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3772470", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3772470", "resource": "Reactome", "description": "Negative regulation of TCF-dependent signaling by WNT ligand antagonists" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SE23", "url": "https://www.uniprot.org/uniprotkb/F1SE23" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of canonical Wnt signaling pathway", "id": "GO:0090090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090090", "evidence": [ { "database": "UniProtKB", "id": "F1SE23", "url": "https://www.uniprot.org/uniprotkb/F1SE23" } ], "pmid": "" }, { "name": "Wnt signaling pathway", "id": "GO:0016055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016055", "evidence": [ { "database": "UniProtKB", "id": "F1SE23", "url": "https://www.uniprot.org/uniprotkb/F1SE23" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "receptor antagonist activity", "id": "GO:0048019", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048019", "evidence": [ { "database": "UniProtKB", "id": "F1SE23", "url": "https://www.uniprot.org/uniprotkb/F1SE23" } ], "pmid": "" }, { "name": "co-receptor binding", "id": "GO:0039706", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0039706", "evidence": [ { "database": "UniProtKB", "id": "F1SE23", "url": "https://www.uniprot.org/uniprotkb/F1SE23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE23-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 223, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE23-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE23" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SE23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE23" }, { "id": "PF04706", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04706" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dickkopf N-terminal cysteine-rich", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 91, "start_aa": "Gln", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SE23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE23" }, { "id": "PF21481", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21481" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dickkopf-related protein 1/2/4 C-terminal subdomain 1", "eco_id": "ECO_0000259", "start_pos": 141, "end_pos": 170, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SE23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE23" }, { "id": "PF21479", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21479" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dickkopf-related protein 1/2/4 C-terminal subdomain 2", "eco_id": "ECO_0000259", "start_pos": 173, "end_pos": 220, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SE42-1", "uniprot_ac": "F1SE42", "uniprot_id": "F1SE42_PIG", "mass": { "chemical_mass": 82913.0, "monoisotopic_mass": 82913.0 }, "refseq": {}, "gene_names": [ { "name": "ADAM3A", "type": "recommended", "evidence": [ { "id": "F1SE42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE42" } ] } ], "protein_names": [ { "name": "ADAM metallopeptidase domain 3A (cyritestin 1)", "type": "synonym", "evidence": [ { "id": "F1SE42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE42/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE42", "url": "https://www.uniprot.org/uniprotkb/F1SE42" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADAM3A", "url": "https://www.uniprot.org/uniprotkb/F1SE42", "locus": { "chromosome": "17", "start_pos": 9088860, "end_pos": 9166340, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007009", "url": "https://www.ensembl.org/id/ENSSSCG00000007009" } ] } } ], "crossref": [ { "id": "F1SE42", "url": "https://alphafold.ebi.ac.uk/entry/F1SE42", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007009", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007009", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001762", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001762", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006586", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006586", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034027", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034027", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11905", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11905", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11905:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11905:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00200", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00200", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SE42", "url": "https://www.uniprot.org/uniprotkb/F1SE42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE42-1", "url": "https://www.uniprot.org/uniprotkb/F1SE42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPFLLLLSGLSQLTSAGHHSETSLLQITVPQKIGTNTKDSGASDTNVTYDIKINRKTFTLHLEKQSFLDSNFLVYSYNKSGVLYPDSSFIKGHCFYQGYAGEIPNSVVTLSTCSGLRGLLQFENISYGIEPLESSATYEHIIYQIKNNKSDFSPIARNYSTTQFAAQPFKILVKSEKKSEVLLKRILKIQVIMDKALYDYMGSEVALASEKIVYVFSLINNMFSQLKMTVMLTSLELWSDKNQILTNGDANEMLQKFVSWKEKKLFQRSHDMAYLLIYRDHPNYIGATYHGMACNPKFAAGIALYPKMITLEAFSVILAQLIGISLGLTYKIDIYNCYCPGTICIMNPEAIRSRGVKFFSSCSVDEFKSTVSRPEFECLQNQIVPKVVPQARTGSCGNGAMEEGEQCDCGAVENCIHKKCCDAANCTLIGDAECGTGPCCDRKTCRLSQRGVLCRRSTDLCDFPEYCSGTSEFCTEDMRAADFEMCNNKTTYCFQGICRDRSKQCLELFGKFAESSSYLCAQEVNIQSDIFGNCDGRSCNFVNTLCAKLVCHWKHSQIVPKTDFDIQYTYLDGHVCMSGNLRNSSTPDLTKVWDGTKCDDGRFCDNGQCRLTQDYRNRPNCSSAVKCGGHGLCNTLLNCHCDVGYAPPACEPEPLSPGGSINDGFWIVEGKNVEFLVKRHRASQKKGLLISFYVLLPLLVLIAIVALQWNKKKIFWNREDTVSEGSPSEASSSKSDLSCSKR", "length": 743, "header": "tr|F1SE42-1|F1SE42_PIG Isoform 1 of ADAM metallopeptidase domain 3A (cyritestin 1) OS=Sus scrofa OX=9823 GN=ADAM3A PE=4 SV=3 CANONICAL=F1SE42-1" }, "isoforms": [ { "isoform_ac": "F1SE42-1", "url": "https://www.uniprot.org/uniprotkb/F1SE42/entry#F1SE42-1", "sequence": { "sequence": "MLPFLLLLSGLSQLTSAGHHSETSLLQITVPQKIGTNTKDSGASDTNVTYDIKINRKTFTLHLEKQSFLDSNFLVYSYNKSGVLYPDSSFIKGHCFYQGYAGEIPNSVVTLSTCSGLRGLLQFENISYGIEPLESSATYEHIIYQIKNNKSDFSPIARNYSTTQFAAQPFKILVKSEKKSEVLLKRILKIQVIMDKALYDYMGSEVALASEKIVYVFSLINNMFSQLKMTVMLTSLELWSDKNQILTNGDANEMLQKFVSWKEKKLFQRSHDMAYLLIYRDHPNYIGATYHGMACNPKFAAGIALYPKMITLEAFSVILAQLIGISLGLTYKIDIYNCYCPGTICIMNPEAIRSRGVKFFSSCSVDEFKSTVSRPEFECLQNQIVPKVVPQARTGSCGNGAMEEGEQCDCGAVENCIHKKCCDAANCTLIGDAECGTGPCCDRKTCRLSQRGVLCRRSTDLCDFPEYCSGTSEFCTEDMRAADFEMCNNKTTYCFQGICRDRSKQCLELFGKFAESSSYLCAQEVNIQSDIFGNCDGRSCNFVNTLCAKLVCHWKHSQIVPKTDFDIQYTYLDGHVCMSGNLRNSSTPDLTKVWDGTKCDDGRFCDNGQCRLTQDYRNRPNCSSAVKCGGHGLCNTLLNCHCDVGYAPPACEPEPLSPGGSINDGFWIVEGKNVEFLVKRHRASQKKGLLISFYVLLPLLVLIAIVALQWNKKKIFWNREDTVSEGSPSEASSSKSDLSCSKR", "length": 743, "header": "tr|F1SE42-1|F1SE42_PIG Isoform 1 of ADAM metallopeptidase domain 3A (cyritestin 1) OS=Sus scrofa OX=9823 GN=ADAM3A PE=4 SV=3 CANONICAL=F1SE42-1" }, "locus": { "chromosome": "17", "start_pos": 9166263, "end_pos": 9088863, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007677.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007677.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007470.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007470.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SE42", "url": "https://www.uniprot.org/uniprotkb/F1SE42" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "F1SE42", "url": "https://www.uniprot.org/uniprotkb/F1SE42" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SE42", "url": "https://www.uniprot.org/uniprotkb/F1SE42" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SE42", "url": "https://www.uniprot.org/uniprotkb/F1SE42" } ], "pmid": "" }, { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SE42", "url": "https://www.uniprot.org/uniprotkb/F1SE42" } ], "pmid": "" }, { "name": "binding of sperm to zona pellucida", "id": "GO:0007339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007339", "evidence": [ { "database": "UniProtKB", "id": "F1SE42", "url": "https://www.uniprot.org/uniprotkb/F1SE42" } ], "pmid": "" }, { "name": "male gonad development", "id": "GO:0008584", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008584", "evidence": [ { "database": "UniProtKB", "id": "F1SE42", "url": "https://www.uniprot.org/uniprotkb/F1SE42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 426, "end_pos": 428, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 489, "end_pos": 491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 584, "end_pos": 586, "annotation": "n_glycosylation_sequon" }, { "start_pos": 621, "end_pos": 623, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE42-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 743, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE42-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE42" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SE42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE42" }, { "id": "PS50214", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50214" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Disintegrin", "eco_id": "ECO_0000259", "start_pos": 394, "end_pos": 483, "start_aa": "Thr", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SE42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE42" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 618, "end_pos": 652, "start_aa": "Asn", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SE42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE42" }, { "id": "PS50215", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50215" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M12B", "eco_id": "ECO_0000259", "start_pos": 186, "end_pos": 384, "start_aa": "Arg", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 149, "end_pos": 151 }, { "start_pos": 159, "end_pos": 161 }, { "start_pos": 426, "end_pos": 428 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 489, "end_pos": 491 }, { "start_pos": 584, "end_pos": 586 }, { "start_pos": 621, "end_pos": 623 }, { "start_pos": 79, "end_pos": 81 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SE46-1", "uniprot_ac": "F1SE46", "uniprot_id": "F1SE46_PIG", "mass": { "chemical_mass": 43362.0, "monoisotopic_mass": 43362.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100517735", "type": "recommended", "evidence": [ { "id": "F1SE46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE46" } ] } ], "protein_names": [ { "name": "Hexosyltransferase", "type": "recommended", "evidence": [ { "id": "F1SE46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE46/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.-", "type": "synonym", "evidence": [ { "id": "F1SE46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE46/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE46", "url": "https://www.uniprot.org/uniprotkb/F1SE46" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100517735", "url": "https://www.uniprot.org/uniprotkb/F1SE46", "locus": {} } ], "crossref": [ { "id": "F1SE46", "url": "https://alphafold.ebi.ac.uk/entry/F1SE46", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007005", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007005", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008428", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008428", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12369:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12369:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SE46", "url": "https://www.uniprot.org/uniprotkb/F1SE46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE46-1", "url": "https://www.uniprot.org/uniprotkb/F1SE46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRRGLLAWVSRVGVLLVLLCCAVSVLYMLACTPRGDSERRGLPGASGPTGRAGYQAALQEWEEQHRGYVGSLQRQIAQLKEELQERSAQLRTAQHLAGDPAGSPERAQADLLAFLRSQVDRAEVHAGVKQATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIQSAVEALNSPAESSPDQRPYTASDFIEGIYRTERDKGTLYELTFRGDHKHQFRRLVLFRPFGPIMKVKKEELNMGSTLVNIIVPLARRVDKFRQFMQNFREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSRGMYSKAAEVKFFLPKSMIRHLFNEHLWHFLLAKMLARSLWFTGVGCSLQVDGQVGGVSVSAAWRAVKASRAEVV", "length": 384, "header": "tr|F1SE46-1|F1SE46_PIG Isoform 1 of Hexosyltransferase OS=Sus scrofa OX=9823 GN=LOC100517735 PE=3 SV=4 CANONICAL=F1SE46-1" }, "isoforms": [ { "isoform_ac": "F1SE46-1", "url": "https://www.uniprot.org/uniprotkb/F1SE46/entry#F1SE46-1", "sequence": { "sequence": "MLRRGLLAWVSRVGVLLVLLCCAVSVLYMLACTPRGDSERRGLPGASGPTGRAGYQAALQEWEEQHRGYVGSLQRQIAQLKEELQERSAQLRTAQHLAGDPAGSPERAQADLLAFLRSQVDRAEVHAGVKQATEYAAVPFDSFTLQKVYQLETGLTRHPEEKPVRKDKRDELVEAIQSAVEALNSPAESSPDQRPYTASDFIEGIYRTERDKGTLYELTFRGDHKHQFRRLVLFRPFGPIMKVKKEELNMGSTLVNIIVPLARRVDKFRQFMQNFREMCIQQDGRVHLTVVYFGKEEMNEVKGILENTSRGMYSKAAEVKFFLPKSMIRHLFNEHLWHFLLAKMLARSLWFTGVGCSLQVDGQVGGVSVSAAWRAVKASRAEVV", "length": 384, "header": "tr|F1SE46-1|F1SE46_PIG Isoform 1 of Hexosyltransferase OS=Sus scrofa OX=9823 GN=LOC100517735 PE=3 SV=4 CANONICAL=F1SE46-1" }, "locus": { "chromosome": "17", "start_pos": 8842025, "end_pos": 8795811, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007673.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007673.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007466.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007466.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SE46", "url": "https://www.uniprot.org/uniprotkb/F1SE46" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi cisterna membrane", "id": "GO:0032580", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032580", "evidence": [ { "database": "UniProtKB", "id": "F1SE46", "url": "https://www.uniprot.org/uniprotkb/F1SE46" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chondroitin sulfate proteoglycan biosynthetic process", "id": "GO:0050650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050650", "evidence": [ { "database": "UniProtKB", "id": "F1SE46", "url": "https://www.uniprot.org/uniprotkb/F1SE46" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity", "id": "GO:0047238", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047238", "evidence": [ { "database": "UniProtKB", "id": "F1SE46", "url": "https://www.uniprot.org/uniprotkb/F1SE46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE46-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 384, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE46-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE46" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 307, "end_pos": 309 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SE54-1", "uniprot_ac": "F1SE54", "uniprot_id": "F1SE54_PIG", "mass": { "chemical_mass": 70701.0, "monoisotopic_mass": 70701.0 }, "refseq": { "ac": "XP_003130752", "name": "WW domain-containing adapter protein with coiled-coil isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130752" }, "gene_names": [ { "name": "WAC", "type": "recommended", "evidence": [ { "id": "F1SE54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ] }, { "name": "WAC", "type": "synonym", "evidence": [ { "id": "XP_003130752", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130752" } ] } ], "protein_names": [ { "name": "WW domain-containing adapter protein with coiled-coil", "type": "recommended", "evidence": [ { "id": "F1SE54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE54/entry#names_and_taxonomy" } ] }, { "name": "WW domain-containing adapter protein with coiled-coil isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003130752", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130752" } ] } ], "function": [ { "annotation": "Acts as a linker between gene transcription and histone H2B monoubiquitination at 'Lys-120' (H2BK120ub1). Interacts with the RNA polymerase II transcriptional machinery via its WW domain and with RNF20-RNF40 via its coiled coil region, thereby linking and regulating H2BK120ub1 and gene transcription. Regulates the cell-cycle checkpoint activation in response to DNA damage. Positive regulator of amino acid starvation-induced autophagy. Also acts as a negative regulator of basal autophagy. Positively regulates MTOR activity by promoting, in an energy-dependent manner, the assembly of the TTT complex composed of TELO2, TTI1 and TTI2 and the RUVBL complex composed of RUVBL1 and RUVBL2 into the TTT-RUVBL complex. This leads to the dimerization of the mTORC1 complex and its subsequent activation. May negatively regulate the ubiquitin proteasome pathway.", "evidence": [ { "database": "UniProtKB", "id": "I3LEF7", "url": "https://www.uniprot.org/uniprotkb/I3LEF7#function" }, { "database": "UniProtKB", "id": "ARBA00054335", "url": "https://www.uniprot.org/uniprotkb/ARBA00054335#function" }, { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WAC", "url": "https://www.uniprot.org/uniprotkb/F1SE54", "locus": { "chromosome": "10", "start_pos": 40022338, "end_pos": 39932599, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011013", "url": "https://www.ensembl.org/id/ENSSSCG00000011013" } ] } } ], "crossref": [ { "id": "F1SE54", "url": "https://alphafold.ebi.ac.uk/entry/F1SE54", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011013", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011013", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517599", "url": "https://www.ncbi.nlm.nih.gov/gene/100517599", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517599", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517599", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SE54", "url": "https://www.orthodb.org/?gene=F1SE54", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15911", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15911", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15911:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15911:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8866654", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003130752", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130752", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE54-1", "url": "https://www.uniprot.org/uniprotkb/F1SE54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LEF7", "url": "https://www.uniprot.org/uniprotkb/I3LEF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LEF7-1", "url": "https://www.uniprot.org/uniprotkb/I3LEF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAADPSPPNKMLRRSDSPENKYSDSTGHSKAKNVHIHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDYRREVMQATATSGFASGMEDKHSSDASSLLPQNILSQTSRHNDRDYRLPRAETHSSSTPVQHPIKPVVHPTATPSTVPSSPFTLQSDHQPKKSFDANGASTLSKLPTPTSSVPAQKTERKESTSGDKSVSHVCTTPSTSSASGLNPTSAPPTSASAIPVSPVPQSPIPPLLQDPNLLRQLLPALQATLQLNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNLTSLISQATQLSTQAQPSNQSPMSLTSDASSPRSYVSPRISTPQTNTVPIKPLVSTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPVSPRSLQRSNSQRSPSPGPNHTSSSNASTATVVPQNPSARPACSLTPTLAAHFNENLIKHVQGWPADHAEKQASRLREEAHNMGSVHMSEICTELKNLRSLVRVCEIQATLREQRILFLRQQIKELEKLKNQNSFMV", "length": 646, "header": "tr|F1SE54-1|F1SE54_PIG Isoform 1 of WW domain-containing adapter protein with coiled-coil OS=Sus scrofa OX=9823 GN=WAC PE=4 SV=2 CANONICAL=F1SE54-1" }, "isoforms": [ { "isoform_ac": "F1SE54-1", "url": "https://www.uniprot.org/uniprotkb/F1SE54/entry#F1SE54-1", "sequence": { "sequence": "MVMYARKQQRLSDGCHDRRGDSQPYQALKYSSKSHPSSGDHRHEKMRDAADPSPPNKMLRRSDSPENKYSDSTGHSKAKNVHIHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDYRREVMQATATSGFASGMEDKHSSDASSLLPQNILSQTSRHNDRDYRLPRAETHSSSTPVQHPIKPVVHPTATPSTVPSSPFTLQSDHQPKKSFDANGASTLSKLPTPTSSVPAQKTERKESTSGDKSVSHVCTTPSTSSASGLNPTSAPPTSASAIPVSPVPQSPIPPLLQDPNLLRQLLPALQATLQLNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNLTSLISQATQLSTQAQPSNQSPMSLTSDASSPRSYVSPRISTPQTNTVPIKPLVSTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPVSPRSLQRSNSQRSPSPGPNHTSSSNASTATVVPQNPSARPACSLTPTLAAHFNENLIKHVQGWPADHAEKQASRLREEAHNMGSVHMSEICTELKNLRSLVRVCEIQATLREQRILFLRQQIKELEKLKNQNSFMV", "length": 646, "header": "tr|F1SE54-1|F1SE54_PIG Isoform 1 of WW domain-containing adapter protein with coiled-coil OS=Sus scrofa OX=9823 GN=WAC PE=4 SV=2 CANONICAL=F1SE54-1" }, "locus": { "chromosome": "10", "start_pos": 40020956, "end_pos": 39933347, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012055.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012055.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011747.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011747.2" } ] } }, { "isoform_ac": "I3LEF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SE54/entry#I3LEF7-1", "sequence": { "sequence": "MRDAADPSPPNKMLRRSDSPENKYSDSTGHSKAKNVHIHRVRERDGGTSYSPQENSHNHSALHSSNSHSSNPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDRDYRREVMQATATSGFASGKSTSGDKSVSHVCTTPSTSSASGLNPTSAPPTSASAIPVSPVPQSPIPPLLQDPNLLRQLLPALQATLQLNNSNVDISKINEVLTAAVTQASLQSIIHKFLTAGPSAFNLTSLISQATQLSTQAQPSNQSPMSLTSDASSPRSYVSPRISTPQTNTVPIKPLVSTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPVSPRSLQRSNSQRSPSPGPNHTSSSNASTATVVPQNPSARPACSLTPTLAAHFNENLIKHVQGWPADHAEKQASRLREEAHNMGSVHMSEICTELKNLRSLVRVCEIQATLREQRILFLRQQIKELEKLKNQNSFMV", "length": 498, "header": "tr|I3LEF7-1|F1SE54_PIG Computationally mapped isoform of WW domain-containing adapter protein with coiled-coil OS=Sus scrofa OX=9823 GN=WAC PE=4 SV=3 CANONICAL=F1SE54-1" }, "locus": { "chromosome": "10", "start_pos": 40020956, "end_pos": 39935318, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024775.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024775.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022445.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022445.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 259, "start_aa": "Thr", "end_pos": 259, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr259", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LEF7", "url": "https://www.uniprot.org/uniprotkb/I3LEF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517599", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517599", "resource": "KEGG Pathway" }, { "id": "R-SSC-8866654", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "resource": "Reactome", "description": "E3 ubiquitin ligases ubiquitinate target proteins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "positive regulation of TORC1 signaling", "id": "GO:1904263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904263", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "regulation of autophagy", "id": "GO:0010506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010506", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "positive regulation of macroautophagy", "id": "GO:0016239", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016239", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "negative regulation of proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0032435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032435", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "mitotic G1 DNA damage checkpoint signaling", "id": "GO:0031571", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031571", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "RNA polymerase II complex binding", "id": "GO:0000993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000993", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SE54", "url": "https://www.uniprot.org/uniprotkb/F1SE54" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 415, "end_pos": 417, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" }, { "start_pos": 535, "end_pos": 537, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE54-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 646, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE54-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE54" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SE54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE54" }, { "id": "PS50020", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50020" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WW", "eco_id": "ECO_0000259", "start_pos": 135, "end_pos": 162, "start_aa": "Trp", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 259 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 415, "end_pos": 417 }, { "start_pos": 434, "end_pos": 436 }, { "start_pos": 529, "end_pos": 531 }, { "start_pos": 535, "end_pos": 537 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SE66-1", "uniprot_ac": "F1SE66", "uniprot_id": "F1SE66_PIG", "mass": { "chemical_mass": 27372.0, "monoisotopic_mass": 27372.0 }, "refseq": { "ac": "XP_003129018", "name": "ras-like protein family member 11B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129018" }, "gene_names": [ { "name": "RASL11B", "type": "recommended", "evidence": [ { "id": "F1SE66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE66" } ] }, { "name": "RASL11B", "type": "synonym", "evidence": [ { "id": "XP_003129018", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129018" } ] } ], "protein_names": [ { "name": "small monomeric GTPase", "type": "recommended", "evidence": [ { "id": "F1SE66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE66/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.2", "type": "synonym", "evidence": [ { "id": "F1SE66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE66/entry#names_and_taxonomy" } ] }, { "name": "ras-like protein family member 11B", "type": "synonym", "evidence": [ { "id": "XP_003129018", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129018" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE66", "url": "https://www.uniprot.org/uniprotkb/F1SE66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RASL11B", "url": "https://www.uniprot.org/uniprotkb/F1SE66", "locus": { "chromosome": "8", "start_pos": 39708170, "end_pos": 39703423, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008835", "url": "https://www.ensembl.org/id/ENSSSCG00000008835" } ] } } ], "crossref": [ { "id": "F1SE66", "url": "https://alphafold.ebi.ac.uk/entry/F1SE66", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008835", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008835", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04146", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04146", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521670", "url": "https://www.ncbi.nlm.nih.gov/gene/100521670", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051065", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051065", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521670", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KEVEPQH", "url": "https://omabrowser.org/oma/group/KEVEPQH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SE66", "url": "https://www.orthodb.org/?gene=F1SE66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45704", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45704", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129018", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129018", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SE66", "url": "https://www.uniprot.org/uniprotkb/F1SE66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE66-1", "url": "https://www.uniprot.org/uniprotkb/F1SE66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLIQNMCTISEYPAPGSAAAADCCLGAAGRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLAIQVQDTPGIQVHENGLSCTEQLNRCIRWADAVVIVFSVTDYKSYELTGQLHQHVQQLHLGARLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENDNDVYNAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRRFKQALSAKVRTVTSV", "length": 248, "header": "tr|F1SE66-1|F1SE66_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RASL11B PE=3 SV=1 CANONICAL=F1SE66-1" }, "isoforms": [ { "isoform_ac": "F1SE66-1", "url": "https://www.uniprot.org/uniprotkb/F1SE66/entry#F1SE66-1", "sequence": { "sequence": "MRLIQNMCTISEYPAPGSAAAADCCLGAAGRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLAIQVQDTPGIQVHENGLSCTEQLNRCIRWADAVVIVFSVTDYKSYELTGQLHQHVQQLHLGARLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENDNDVYNAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRRFKQALSAKVRTVTSV", "length": 248, "header": "tr|F1SE66-1|F1SE66_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RASL11B PE=3 SV=1 CANONICAL=F1SE66-1" }, "locus": { "chromosome": "8", "start_pos": 39707121, "end_pos": 39703591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009671.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009671.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009422.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009422.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SE66", "url": "https://www.uniprot.org/uniprotkb/F1SE66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521670", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BWN3-1", "protein_name": "small monomeric GTPase", "gene_name": "RASL11B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLTQSMCTIAECAPGGEGCPAARPRLVKIAVVGGSGVGKTALVVRFLTRRFIGDYERNAGNLYSRHIQIDGEVLAIQVQDTPGVQIHEHSLDCNEQLNRCIRWADALVIVFSITDYKSYELLSHLYHHVRQMHPGNAVPVVIVANKADLLHIKEVEPQHGLQLANMLGCAFYEVSVSENYNDVFNAFHVLCKEVSKQQTTSTPERRRTSLIPRPKSPNMQDLKRRFKQALSAKVRTVTSV", "length": 241 }, "evidence": [ { "id": "F1SE66", "url": "https://omabrowser.org/oma/group/F1SE66/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3IHJ9-1", "protein_name": "small monomeric GTPase", "gene_name": "Rasl11b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRLIQNMCTIAEYPAPGSAAADYCLGAAGRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLAIQVQDTPGVQVHENGLSCNEQLNRCIRWADAVVIVFSITDHKSYELIGQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLAGMLGCSFYEVSVSENYNDVYNAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRRFKQALSAKVRTVTSV", "length": 247 }, "evidence": [ { "id": "F1SE66", "url": "https://omabrowser.org/oma/group/F1SE66/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5E9J3-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "RASL11B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLIQNMCTIAEYPAPGSAAAADCCLGAAGRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLAIQVQDTPGIQVHENGLSCTEQLNRCIRWADAVVIVFSITDYKSYELTSQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENDNDVYNAFHVLCKEVSHKQQPSGTPEKRRTSLIPRPKSPNMQDLKRRFKQALSAKVRTVTSV", "length": 248 }, "evidence": [ { "id": "F1SE66", "url": "https://omabrowser.org/oma/group/F1SE66/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6IMA7-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "Rasl11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLIQNMCTIAEYPAPGSTAADCCLGAAGRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVHIEGETLAIQVQDTPGIQVHENGLSCNEQLNRCIRWADAVVIVFSITDHKSYELISQLHQHVQQLHPGTRLPVVVVANKADLLHVKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSPKQQASGTPEKRRTSLIPRPKSPNMQDLKRRFKQALSAKVRTVTSV", "length": 247 }, "evidence": [ { "id": "F1SE66", "url": "https://omabrowser.org/oma/group/F1SE66/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P0U3-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "rasl11b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRLIQNMSTIAEYPSADCPSSRVIKIAVIGGSGVGKTALVVRFLTKRFIGDYERNVGNLYSREVQIDGEQVAIQVQDTPGVQVNANGLSCTDHVSRSIQWADAVVMVYSVTDRKSFDLIGQLHQLVTRTHSDRSIPIILVANKADLLHVRRVDAQEGPVLSSALSCSFYEVSASEDYNQVHSAFHRLCVDLAKLQPQTPINATSSVTEKKRSPLIPRPKSPNMQDLKRRFKQVLSAKVRTVTSV", "length": 244 }, "evidence": [ { "id": "F1SE66", "url": "https://omabrowser.org/oma/group/F1SE66/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q922H7-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "Rasl11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRLIQNMCTIAEYPAPGSTAADCCLGAAGRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVHIEGETLAIQVQDTPGIQVHENGLSCSEQLNRCIRWADAVVLVFSITDHKSYELISQLHQHVQQLHPGTRLPVVLVANKADLLHVKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYNAFHVLCKEVSPKQQPSSTPEKRRTSLIPRPKSPNMQDLKRRFKQALSAKVRTVTSV", "length": 247 }, "evidence": [ { "id": "F1SE66", "url": "https://omabrowser.org/oma/group/F1SE66/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BPW5-1", "protein_name": "Ras-like protein family member 11B", "gene_name": "RASL11B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLIQNMCTIAEYPAPGNAAASDCCVGAAGRRLVKIAVVGASGVGKTALVVRFLTKRFIGDYERNAGNLYTRQVQIEGETLALQVQDTPGIQVHENSLSCSEQLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVDPQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSLIPRPKSPNMQDLKRRFKQALSAKVRTVTSV", "length": 248 }, "evidence": [ { "id": "F1SE66", "url": "https://omabrowser.org/oma/group/F1SE66/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SE66", "url": "https://www.uniprot.org/uniprotkb/F1SE66" } ], "pmid": "" }, { "name": "transforming growth factor beta receptor binding", "id": "GO:0005160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005160", "evidence": [ { "database": "UniProtKB", "id": "F1SE66", "url": "https://www.uniprot.org/uniprotkb/F1SE66" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "F1SE66", "url": "https://www.uniprot.org/uniprotkb/F1SE66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE66-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 248, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE66-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE66" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SE78-1", "uniprot_ac": "F1SE78", "uniprot_id": "F1SE78_PIG", "mass": { "chemical_mass": 84947.0, "monoisotopic_mass": 84947.0 }, "refseq": { "ac": "XP_020956866", "name": "leucine-rich repeat-containing protein 66 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956866" }, "gene_names": [ { "name": "LRRC66", "type": "synonym", "evidence": [ { "id": "XP_020956866", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956866" } ] } ], "protein_names": [ { "name": "Leucine rich repeat containing 66", "type": "synonym", "evidence": [ { "id": "F1SE78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE78/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 66 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020956866", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956866" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE78", "url": "https://www.uniprot.org/uniprotkb/F1SE78" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SE78", "locus": {} } ], "crossref": [ { "id": "F1SE78", "url": "https://alphafold.ebi.ac.uk/entry/F1SE78", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008832", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008832", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522021", "url": "https://www.ncbi.nlm.nih.gov/gene/100522021", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LWDSQME", "url": "https://omabrowser.org/oma/group/LWDSQME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF213", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF213", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020956866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956866", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SE78", "url": "https://www.uniprot.org/uniprotkb/F1SE78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE78-1", "url": "https://www.uniprot.org/uniprotkb/F1SE78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRHPWIHSLEVLNLSNNTIHSVSLDLPSVKSSWVKCHQGSLRNGLPFLKLLILKGNKLGNIPKGLWKLKSLQSLDLSFNGISEIGISDLHSCLQLENLHLKSNKIFRIHPAAFKDLKKLQVVDLSNNALTTILPMMIVALELPHLQANLADNQWQCDNSVAVFQNFISESWREKWNTICNKSTGKEEAYQWAPKSRTSGETRIPRINLNHTKSLRRSNAESPGEAGLSSLGKTDPARPEAGEQQRRLHRRVRSTQDGQTAGRKEAASASQDLTLAVCLAVFITFLVAFCLGAFARPYVDRLWQQRCQKKSPGSGVVYSNQGFYDEIDTVGNTQQPRTDQHQTFQDVNLYENQAPGWRTEASPRTDVALKGTLRQSRKEPGSQQGRGQCRDPSGSGSRRDEKLPNHSVVWPDLRAQPDAEDTQVPWAGQDRLHRDDIPTEGNYDPRAGEVSPNERSVGIAAEAVGLQNGPGSIQKDFNESGPPVPRKMMAPLSEMPTHTEAPRPGENEGRWASGHLPSGFFKENLLSAQQQRLKGSGTEAELPAHHTAATLSDPGHMDPSPPALPPGWGRDPHVTPANKEPEQKHASEAWYELDSNSDSDEGSLFTLSSSSEDWRHMAEEEEAPGEESGTAPGPLEDKGSGERRDNVMSLESLGHKCETQEDRSEKTLISNPVSGLFETHLESASNISKFEDPLSSPGSVGHSPCSHEIPGMSIYDYISALQPQPVEWHCSLRDLEFSNVDILPPTPACSAEVPSDPEDRAVHEGDVDIYN", "length": 770, "header": "tr|F1SE78-1|F1SE78_PIG Isoform 1 of Leucine rich repeat containing 66 OS=Sus scrofa OX=9823 GN= PE=4 SV=5 CANONICAL=F1SE78-1" }, "isoforms": [ { "isoform_ac": "F1SE78-1", "url": "https://www.uniprot.org/uniprotkb/F1SE78/entry#F1SE78-1", "sequence": { "sequence": "MRHPWIHSLEVLNLSNNTIHSVSLDLPSVKSSWVKCHQGSLRNGLPFLKLLILKGNKLGNIPKGLWKLKSLQSLDLSFNGISEIGISDLHSCLQLENLHLKSNKIFRIHPAAFKDLKKLQVVDLSNNALTTILPMMIVALELPHLQANLADNQWQCDNSVAVFQNFISESWREKWNTICNKSTGKEEAYQWAPKSRTSGETRIPRINLNHTKSLRRSNAESPGEAGLSSLGKTDPARPEAGEQQRRLHRRVRSTQDGQTAGRKEAASASQDLTLAVCLAVFITFLVAFCLGAFARPYVDRLWQQRCQKKSPGSGVVYSNQGFYDEIDTVGNTQQPRTDQHQTFQDVNLYENQAPGWRTEASPRTDVALKGTLRQSRKEPGSQQGRGQCRDPSGSGSRRDEKLPNHSVVWPDLRAQPDAEDTQVPWAGQDRLHRDDIPTEGNYDPRAGEVSPNERSVGIAAEAVGLQNGPGSIQKDFNESGPPVPRKMMAPLSEMPTHTEAPRPGENEGRWASGHLPSGFFKENLLSAQQQRLKGSGTEAELPAHHTAATLSDPGHMDPSPPALPPGWGRDPHVTPANKEPEQKHASEAWYELDSNSDSDEGSLFTLSSSSEDWRHMAEEEEAPGEESGTAPGPLEDKGSGERRDNVMSLESLGHKCETQEDRSEKTLISNPVSGLFETHLESASNISKFEDPLSSPGSVGHSPCSHEIPGMSIYDYISALQPQPVEWHCSLRDLEFSNVDILPPTPACSAEVPSDPEDRAVHEGDVDIYN", "length": 770, "header": "tr|F1SE78-1|F1SE78_PIG Isoform 1 of Leucine rich repeat containing 66 OS=Sus scrofa OX=9823 GN= PE=4 SV=5 CANONICAL=F1SE78-1" }, "locus": { "chromosome": "8", "start_pos": 39124122, "end_pos": 39107264, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009667.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009667.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009418.5", "url": "https://www.ensembl.org/id/ENSSSCP00000009418.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 745, "start_aa": "Thr", "end_pos": 745, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr745", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SE78", "url": "https://www.uniprot.org/uniprotkb/F1SE78" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1BQ13-1", "protein_name": "Leucine rich repeat containing 66", "gene_name": "LRRC66", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKNLCFRVITMVIGLYFTGTMTNPSRKSSILFNSKYQWNGYLTTNCSFAGKHEIPMDIPQMAPTVDDSSNFLRVLLQTHMKKEEWNIKHLDLSNNLISKITLSSLEHFHALETLNLSNNAIHSVLLDLPSFKSSWVKRHRGSLRNRLPFLKLLTLQRNKLSNIPKGLWKLKSLQSLDLSFNRISQIGLSDFHNCLQLENLHLKSNRIFRIHPEAFKDLKKLQMVDLSNNGLTAILPVVIMALELPHLEADLADNPWQCDYSLAVFQNVISESWRKRWNAICNESIGKEDAHWWTPTSRMSRETHLPHADLKHMNTLIRSKAERAQEVRFSMLEKDTAGSDAGDRPRELPKRVRRAEDVRAAGRKADSSQDLVLAVCLSVFITFFVAFCLGAFARPYVDRLWQQRCREKSPGSASGNEYSNQAFYDEIEGAVNLQQPRMDLPQTFHHLNLYENQAPRTAVVPARTVAPSRREAGGRQDREQRRVSTGAGSGKDTVPPNHSAARRVLYGPPNAHDTQLTSAGWDHIYRNDPGEGNYDTVARQVSLSERSVGIPAVAAGIQTSPSSVRKDSDELGPPCPRETTMPLSQRPARTHTPSTGEERGGVPPHFPSEFSKENGQSAQQQRLQGASAEGQPPAHYEAATLSDLGDPSPPGGPPGCCGDLPVTPAYQEPAQKHTPDAQYEVDSDSDSEEGSLFTLSSTSSENWRNVAEEEAGGEQSWRAGEPPGDQVSCERRDSVRPLESPKDNIAFQKTLRKCENQEDHFGKTVTSDPDSHLCQTHLESASNTNNYEDPLPRSSGSSSSSEEVPSMSIYNYISALQPSAVEWQYSLRDLEFANVDALPQTPPCSAKVPSDPDKCLS", "length": 857 }, "evidence": [ { "id": "F1SE78", "url": "https://omabrowser.org/oma/group/F1SE78/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q68CR7-1", "protein_name": "Leucine-rich repeat-containing protein 66", "gene_name": "LRRC66", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKNLYFRVITIVIGLYFTGIMTNASRKSNILFNSECQWNEYILTNCSFTGKCDIPVDISQTAATVDVSFNFFRVLLQSHTKKEEWKIKHLDLSNNLISKITLSPFAYLHALEVLNLSNNAIHSLSLDLLSPKSSWVKRHRSSFRNRFPLLKVLILQRNKLSDTPKGLWKLKSLQSLDLSFNGILQIGWSDFHNCLQLENLCLKSNKIFKIPPQAFKDLKKLQVIDLSNNALITILPMMIIALEFPHLVVDLADNNWQCDDSVAVFQNFISESWRKKWNVICNRSIGSEEANGGTPQSRISRETRLPPIHLHRMKSLIRSKAERPQGGRHTGISTLGKKAKAGSGLRKKQRRLPRSVRSTRDVQAAGKKEDAPQDLALAVCLSVFITFLVAFSLGAFTRPYVDRLWQKKCQSKSPGLDNAYSNEGFYDDMEAAGHTPHPETHLRQVFPHLSLYENQTPFWVTQPHPHATVIPDRTLGRSRKDPGSSQSPGQCGDNTGAGSGNDGAVYSILQRHPHAGNRELMSAAQDHIHRNDILGEWTYETVAQEEPLSAHSVGVSSVAGTSHAVSGSSRYDSNELDPSLSGEITASLCKMLTHAEAQRTGDSKERGGTEQSLWDSQMEFSKERQVSSSIDLLSIQQPRLSGARAEEALSAHYSEVPYGDPRDTGPSVFPPRWDSGLDVTPANKEPVQKSTPSDTCCELESDCDSDEGSLFTLSSISSESARSKTEEAVPDEESLQDESSGASKDNVTAVDSLEENVTFQTIPGKCKNQEDPFEKPLISAPDSGMYKTHLENASDTDRSEGLSPWPRSPGNSPLGDEFPGMFTYDYDTALQSKAAEWHCSLRDLEFSNVDVLQQTPPCSAEVPSDPDKAAFHERDSDILK", "length": 880 }, "evidence": [ { "id": "F1SE78", "url": "https://omabrowser.org/oma/group/F1SE78/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6TXF5-1", "protein_name": "Leucine-rich repeat-containing protein 66", "gene_name": "Lrrc66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDFYARVTVMVTGLCFVGTVTNPSRKSSLSLHQQDGDLLANWSSTRHTSQKTDTVDRNSYFFRVLFQPHTKERHTNHLDRTNHRLSKVTLSCLAHLRALEMLNLGDDVIHSLCLDLSLPSSSRQKRHRSRFRGRHPRLKVLLLQRNQLGPTPKGLWKLKPLCSLDLSFNRRVGIGLSGFHGCLQLKSIYLKNNKILTIHPEAFKGLKKLQVVDLRSSALTMLVPIVTIALEWPNLELGLADNQWQCNESDANFQNIASVSWGEIWKAVCNTPVENEKPYVEASQIRISRDIHLPRSPSSDLQSLIQSKAEKPRAGMDVHLSALEKKAQVGYGDLKGIWLQSPMELRDSQGGPVTDRKDDKPPDLALAVCLSVFITFVVAFCLGAFARPYIDRLRQQRCLNKRPGSENAYSNEGFHDDVEAAQHVQHQGTDLCQTTHHLNLFENQDPSWGTEAIPHGAVLSERMLGSNGMDPSSQQSPGQFEDSGEARSGDGNMFPNGRVVHPAVHGLPSADAQKPISPGQHHYDVPEESLYDTVAQEYSLLDNAMDRSSVAGCLGTFPNSINSGRDELCPSQPRDVVASFSKTLAHMSTREAEESVERGFPEPLGAMGSQIESSEERQVSNSIRELATQQASFQEVDVEERLAHVYSEALYNDTPSHMPRHSSGHDVASATEEAVQRDASFDPHDDLVTNYESDSDEGSLFTLSSEGSQDTRSLTEEQAFVESGGDSQPLPSRNLGEYKDSVTSAESVEDITSQQTLEKREAQEAHLGNTLISGPDSCVHETHLENDSSPLDPENVPTWTQPPDHKLAHHETLGTFVYGDIGPQSEAVDWLYSLRDLEFPNIDSSPSPPCSDQDPSDPEEHDTK", "length": 865 }, "evidence": [ { "id": "F1SE78", "url": "https://omabrowser.org/oma/group/F1SE78/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8K0B3-1", "protein_name": "Leucine-rich repeat-containing protein 66", "gene_name": "Lrrc66", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRDFYVRVTILVTGLCFVETVTTPSRKSSVSFNPEYQRNGDLLVNWSSIRHVSQNTDAMDRSFYFFRVLFQPHTQKERHIKPPDRTHHRISKVTLDPLAHLHALEILNLSNKAIHYFSLDQPLPPSSHQKRHGGHSHSRLPRLQVLILQRNQLSGTPKGLWKLKSLRSLDLSFNRIVHIGLSDFHGCLQLESIYLKSNKICTIHPKAFKGLKKLQVVDLRSNALTTLVPIVTIALELPHLELGLADNQWQCSESNVNFQNITSSSWREIWKAICNMSVENKRPNAETHQIRKSRDTHLLLSPPSDLKSLIQSKAERPQAGMDMHLSALGKEAKDGYGDLRGMWPQSPVELRDSQDEQVTDRKDDKPPALELAICLSVFITFVVAFCLGAFARPYIDRLRQQRCSNKRPGSDNAYSNKGFHGDIEGAQHMEYQGTDLHQTTHHLHLSENQNPSWVAEPIPHSAVQSEQMLGSNGTDPGHQQSPEQLKDSNESRSGDSIVLPSGPVAHLALHGLPNADAHKAISPVQHHHDFLEEAHYDTVAQEYSLIDDVMDRSSITGPLGTFPSSVESRRDDLHPSQPRDVVASFSKTLAHANTREAEGSMETGCPEPLGAMDSQMGSSEERQVSNSIRELATQQPSFQGVDAEERLSHVYSEVLHNDPPSLRPRWGSGHYVIPATGEPVERDAPFDPHYDLVTNYESDSDEGSLFTLSSEGSEDTRSLAEEQASVENDGTSQPLPSRNLGEYKDSVTSAESVEDLTSQRIPEKCEAQEAHLRNTLISGPDSCVCETNQENDSSSLDPENRSTWPQLPGHKLSHHETLGTYGDIEPQSEAVDWHYSLRDLESPNVDSSPSPPYSDEDLSGPEDRARKRSKHW", "length": 872 }, "evidence": [ { "id": "F1SE78", "url": "https://omabrowser.org/oma/group/F1SE78/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SE78", "url": "https://www.uniprot.org/uniprotkb/F1SE78" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1SE78", "url": "https://www.uniprot.org/uniprotkb/F1SE78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 404, "end_pos": 406, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" }, { "start_pos": 685, "end_pos": 687, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE78-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 770, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE78-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE78" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 745 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 16, "end_pos": 18 }, { "start_pos": 180, "end_pos": 182 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 404, "end_pos": 406 }, { "start_pos": 477, "end_pos": 479 }, { "start_pos": 685, "end_pos": 687 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SE89-1", "uniprot_ac": "F1SE89", "uniprot_id": "F1SE89_PIG", "mass": { "chemical_mass": 123789.0, "monoisotopic_mass": 123789.0 }, "refseq": {}, "gene_names": [ { "name": "NFX1", "type": "recommended", "evidence": [ { "id": "F1SE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ] } ], "protein_names": [ { "name": "Transcriptional repressor NF-X1", "type": "recommended", "evidence": [ { "id": "F1SE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE89/entry#names_and_taxonomy" } ] }, { "name": "Nuclear transcription factor, X box-binding protein 1", "type": "synonym", "evidence": [ { "id": "F1SE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE89/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NFX1", "url": "https://www.uniprot.org/uniprotkb/F1SE89", "locus": { "chromosome": "10", "start_pos": 33126607, "end_pos": 33200680, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010994", "url": "https://www.ensembl.org/id/ENSSSCG00000010994" } ] } } ], "crossref": [ { "id": "F1SE89", "url": "https://alphafold.ebi.ac.uk/entry/F1SE89", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010994", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010994", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02643", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02643", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06008", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06008", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16696", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16696", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000967", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000967", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034076", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034076", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034078", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034078", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12360", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12360", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12360:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12360:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01422", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01422", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE89-1", "url": "https://www.uniprot.org/uniprotkb/F1SE89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEAPPVSGTFKFNTDAAEFIPQERKNSGLNSGSQRRLDSNRIGRRNYSSPPPCHLSRQVPYDDISALHQHSYHPSGSKPKNQQTSFQSSASNKSLKSHGLQNHPWQKLKSEKQHIRVKRAQSLIDQTSEAAGLESVAKSESGTNLREHSPSESEKEIVGADPRGAKPKKATQFVYSYGRGPKVKGKLKSEWGNRLTPKPEDAGSENTKPVGVIQPDSSDTSSRKGIVDGSGARRSEQKRYLQKRPPWEVEGARPRPGRNPPKQEGQRHTNIGFRNNTASIPKDNLNERPAKSACDSENLAVINKSSRRVDLEKCAVRRQDPQVTSFPRGKQNHLLKNVETHTGSLIEQLTTEKYECMVCCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSGWRCPACQNVSAHVPNTYACFCGKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECGTRHTVRCGQAISIHCSNPCENILNCGQHHCAELCHGGQCQPCRIILNQVCYCGSTSRDVLCGTDVGKSDGFGDFGCLKICGKDLKCGNHTCSQVCHPQPCQPCPRLPQLVRCCPCGQTPLSQLLELGSSGRKTCMDPVPSCGKVCGKPLPCGSLDFIHTCEKLCHEGDCGPCSRTSVISCRCSFRTKELPCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHGASVIYPPVPCGTRPPECTQTCARVHECDHPVYHSCHSEDKCPPCTFLTQKWCMGKHELRSNIPCHLVDISCGLPCGATLPCGMHRCQRLCHKGECLVDEPCKQPCTTSRADCGHPCMAPCHLSSPCPVTACKAKVELQCECGRRKETMICSEASSTYQRIAAISMASKITDMQLGDSVEISKLITKKEIHQARLECDEECSALERKKRLAEALHISDDSDPFNVRSSASKFSDSLKEDARKDLKFVSDIEKEMEALVEAVNKGKNNKKSHCFPPMNRDHRRIIHDLAQVYGLESVSYDSEPKRNVVVTAVRGKSICPPNTLTSVLEREMQSRPPPPIPHHRHQTDKNPGSSNLQKIAKEPIIDYFDVQD", "length": 1117, "header": "tr|F1SE89-1|F1SE89_PIG Isoform 1 of Transcriptional repressor NF-X1 OS=Sus scrofa OX=9823 GN=NFX1 PE=3 SV=4 CANONICAL=F1SE89-1" }, "isoforms": [ { "isoform_ac": "F1SE89-1", "url": "https://www.uniprot.org/uniprotkb/F1SE89/entry#F1SE89-1", "sequence": { "sequence": "MAEAPPVSGTFKFNTDAAEFIPQERKNSGLNSGSQRRLDSNRIGRRNYSSPPPCHLSRQVPYDDISALHQHSYHPSGSKPKNQQTSFQSSASNKSLKSHGLQNHPWQKLKSEKQHIRVKRAQSLIDQTSEAAGLESVAKSESGTNLREHSPSESEKEIVGADPRGAKPKKATQFVYSYGRGPKVKGKLKSEWGNRLTPKPEDAGSENTKPVGVIQPDSSDTSSRKGIVDGSGARRSEQKRYLQKRPPWEVEGARPRPGRNPPKQEGQRHTNIGFRNNTASIPKDNLNERPAKSACDSENLAVINKSSRRVDLEKCAVRRQDPQVTSFPRGKQNHLLKNVETHTGSLIEQLTTEKYECMVCCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSGWRCPACQNVSAHVPNTYACFCGKVKNPEWSRNEIPHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECGTRHTVRCGQAISIHCSNPCENILNCGQHHCAELCHGGQCQPCRIILNQVCYCGSTSRDVLCGTDVGKSDGFGDFGCLKICGKDLKCGNHTCSQVCHPQPCQPCPRLPQLVRCCPCGQTPLSQLLELGSSGRKTCMDPVPSCGKVCGKPLPCGSLDFIHTCEKLCHEGDCGPCSRTSVISCRCSFRTKELPCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHGASVIYPPVPCGTRPPECTQTCARVHECDHPVYHSCHSEDKCPPCTFLTQKWCMGKHELRSNIPCHLVDISCGLPCGATLPCGMHRCQRLCHKGECLVDEPCKQPCTTSRADCGHPCMAPCHLSSPCPVTACKAKVELQCECGRRKETMICSEASSTYQRIAAISMASKITDMQLGDSVEISKLITKKEIHQARLECDEECSALERKKRLAEALHISDDSDPFNVRSSASKFSDSLKEDARKDLKFVSDIEKEMEALVEAVNKGKNNKKSHCFPPMNRDHRRIIHDLAQVYGLESVSYDSEPKRNVVVTAVRGKSICPPNTLTSVLEREMQSRPPPPIPHHRHQTDKNPGSSNLQKIAKEPIIDYFDVQD", "length": 1117, "header": "tr|F1SE89-1|F1SE89_PIG Isoform 1 of Transcriptional repressor NF-X1 OS=Sus scrofa OX=9823 GN=NFX1 PE=3 SV=4 CANONICAL=F1SE89-1" }, "locus": { "chromosome": "10", "start_pos": 33200651, "end_pos": 33126678, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012035.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012035.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011727.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011727.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" }, { "name": "protein autoubiquitination", "id": "GO:0051865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051865", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SE89", "url": "https://www.uniprot.org/uniprotkb/F1SE89" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 567, "end_pos": 569, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE89-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1117, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE89-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE89" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE89" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 354, "end_pos": 410, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE89" }, { "id": "PS51061", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "R3H", "eco_id": "ECO_0000259", "start_pos": 991, "end_pos": 1059, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SE89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE89" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 357, "end_pos": 408, "start_aa": "Cys", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 276, "end_pos": 278 }, { "start_pos": 304, "end_pos": 306 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 567, "end_pos": 569 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SE99-1", "uniprot_ac": "F1SE99", "uniprot_id": "F1SE99_PIG", "mass": { "chemical_mass": 42244.0, "monoisotopic_mass": 42244.0 }, "refseq": {}, "gene_names": [ { "name": "ZAR1", "type": "recommended", "evidence": [ { "id": "F1SE99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE99" } ] } ], "protein_names": [ { "name": "Zygote arrest 1", "type": "synonym", "evidence": [ { "id": "F1SE99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE99/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SE99", "url": "https://www.uniprot.org/uniprotkb/F1SE99" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZAR1", "url": "https://www.uniprot.org/uniprotkb/F1SE99", "locus": { "chromosome": "8", "start_pos": 38391611, "end_pos": 38386643, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008824", "url": "https://www.ensembl.org/id/ENSSSCG00000008824" } ] } } ], "crossref": [ { "id": "F1SE99", "url": "https://alphafold.ebi.ac.uk/entry/F1SE99", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008824", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008824", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CSCAVTQ", "url": "https://omabrowser.org/oma/group/CSCAVTQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31054", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31054", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31054:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31054:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13695", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13695", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SE99", "url": "https://www.uniprot.org/uniprotkb/F1SE99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SE99-1", "url": "https://www.uniprot.org/uniprotkb/F1SE99-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALGDEVLDGYMYPACTLYSYPYPYPAAAKDKRAAGGGGWRHPDGGYPPVSSSDGAAPSSFPGYGQLAAADYLHSYQRAQLMALLSQMGPGLAPRPGRVSIRDVAVQVNPRRDVSVQCSLGRRTLLRRAREPGSCSEGAAGAGGSGLVSPQQPRRGPEQGSPPNGASRPIRFPRTVAVYSPMATRRLDTLQEGSEAVAGEQRPGEPGGERGPASARPRGPEAGEESARKTPQPPQSAEEEDEAQAAVRTSPEQPSPVARAPDAVGEGLSPRSPQPGKERLRFQFLEQKYGYYHCKDCNIRWESAYVWCVQGTNKVYYKQFCRTCQKSYNPYRVEDITCQNCKLTRCSCPVKLRHVDPKRPHRQDLCGRCKGKRLSCDSTFSFKYII", "length": 387, "header": "tr|F1SE99-1|F1SE99_PIG Isoform 1 of Zygote arrest 1 OS=Sus scrofa OX=9823 GN=ZAR1 PE=3 SV=1 CANONICAL=F1SE99-1" }, "isoforms": [ { "isoform_ac": "F1SE99-1", "url": "https://www.uniprot.org/uniprotkb/F1SE99/entry#F1SE99-1", "sequence": { "sequence": "MAALGDEVLDGYMYPACTLYSYPYPYPAAAKDKRAAGGGGWRHPDGGYPPVSSSDGAAPSSFPGYGQLAAADYLHSYQRAQLMALLSQMGPGLAPRPGRVSIRDVAVQVNPRRDVSVQCSLGRRTLLRRAREPGSCSEGAAGAGGSGLVSPQQPRRGPEQGSPPNGASRPIRFPRTVAVYSPMATRRLDTLQEGSEAVAGEQRPGEPGGERGPASARPRGPEAGEESARKTPQPPQSAEEEDEAQAAVRTSPEQPSPVARAPDAVGEGLSPRSPQPGKERLRFQFLEQKYGYYHCKDCNIRWESAYVWCVQGTNKVYYKQFCRTCQKSYNPYRVEDITCQNCKLTRCSCPVKLRHVDPKRPHRQDLCGRCKGKRLSCDSTFSFKYII", "length": 387, "header": "tr|F1SE99-1|F1SE99_PIG Isoform 1 of Zygote arrest 1 OS=Sus scrofa OX=9823 GN=ZAR1 PE=3 SV=1 CANONICAL=F1SE99-1" }, "locus": { "chromosome": "8", "start_pos": 38391441, "end_pos": 38386643, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009654.2", "url": "https://www.ensembl.org/id/ENSSSCT00000009654.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009405.1", "url": "https://www.ensembl.org/id/ENSSSCP00000009405.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SE99", "url": "https://www.uniprot.org/uniprotkb/F1SE99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q80SU3-1", "protein_name": "Zygote arrest protein 1", "gene_name": "Zar1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFPASTFHPCPHPYPQATKAGDGWRFGARGCRPAPPSFLPGYRQLMAAEYVDSHQRAQLMALLSRMGPRSVSSRDAAVQVNPRRDASVQCSLGRRTLQPAGCRASPDARSGSCQPRGHAGAGRSPRSWQTVAPFSSVTFCGLSSSLEVAGGRQTPTKGEGSPASSGTREPEPREVAARKAVPQPRSEEGDVQAAGQAGWEQQPPPEDRNSVAAMQSEPGSEEPCPAAEMAQDPGDSDAPRDQASPQSTEQDKERLRFQFLEQKYGYYHCKDCKIRWESAYVWCVQGTSKVYFKQFCRVCEKSYNPYRVEDITCQSCKRTRCACPVRLRHVDPKRPHRQDLCGRCKDKRLSCDSTFSFKYII", "length": 361 }, "evidence": [ { "id": "F1SE99", "url": "https://omabrowser.org/oma/group/F1SE99/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86SH2-1", "protein_name": "Zygote arrest protein 1", "gene_name": "ZAR1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALGDEVLDGYVFPACPPCSYRYPYPAATKGKGAAGGSWQQRGRGCLPASSPCSAGAASLSFPGCGRLTAAEYFDSYQRERLMALLAQVGPGLGPRARRAGSCDVAVQVSPRIDAAVQCSLGRRTLQRRARDPESPAGPGAEGTTGGGSFSQQPSRRGLEQGSPQNGAPRPMRFPRTVAVYSPLALRRLTAFLEGPGPAAGEQRSGASDGERGPPPARLQGPEEGEVWTKKAPRRPQSDDDGEAQAAVRASWEQPADGPELPPREAQEGEAAPRSALRSPGQPPSAGRARDGGDGREAAVAGEGPSPRSPELGKERLRFQFLEQKYGYYHCKDCNIRWESAYVWCVQGTNKVYFKQFCRTCQKSYNPYRVEDITCQSCKQTRCSCPVKLRHVDPKRPHRQDLCGRCKGKRLSCDSTFSFKYII", "length": 424 }, "evidence": [ { "id": "F1SE99", "url": "https://omabrowser.org/oma/group/F1SE99/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SE99", "url": "https://www.uniprot.org/uniprotkb/F1SE99" } ], "pmid": "" }, { "name": "cytoplasmic ribonucleoprotein granule", "id": "GO:0036464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036464", "evidence": [ { "database": "UniProtKB", "id": "F1SE99", "url": "https://www.uniprot.org/uniprotkb/F1SE99" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SE99", "url": "https://www.uniprot.org/uniprotkb/F1SE99" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "F1SE99", "url": "https://www.uniprot.org/uniprotkb/F1SE99" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of translation", "id": "GO:0017148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017148", "evidence": [ { "database": "UniProtKB", "id": "F1SE99", "url": "https://www.uniprot.org/uniprotkb/F1SE99" } ], "pmid": "" }, { "name": "oocyte maturation", "id": "GO:0001556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001556", "evidence": [ { "database": "UniProtKB", "id": "F1SE99", "url": "https://www.uniprot.org/uniprotkb/F1SE99" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SE99-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 387, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SE99-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SE99" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SE99", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SE99" }, { "id": "SM01328", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01328" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "3CxxC-type", "eco_id": "ECO_0000259", "start_pos": 288, "end_pos": 373, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEA0-1", "uniprot_ac": "F1SEA0", "uniprot_id": "F1SEA0_PIG", "mass": { "chemical_mass": 48928.0, "monoisotopic_mass": 48928.0 }, "refseq": { "ac": "XP_013834114", "name": "sodium/bile acid cotransporter 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834114" }, "gene_names": [ { "name": "SLC10A4", "type": "recommended", "evidence": [ { "id": "F1SEA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEA0" } ] }, { "name": "SLC10A4", "type": "synonym", "evidence": [ { "id": "XP_013834114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834114" } ] } ], "protein_names": [ { "name": "Putative sodium/bile acid cotransporter 4", "type": "recommended", "evidence": [ { "id": "F1SEA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEA0/entry#names_and_taxonomy" } ] }, { "name": "Na(+)/bile acid cotransporter 4", "type": "synonym", "evidence": [ { "id": "F1SEA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEA0/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 10 member 4", "type": "synonym", "evidence": [ { "id": "F1SEA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEA0/entry#names_and_taxonomy" } ] }, { "name": "sodium/bile acid cotransporter 4", "type": "synonym", "evidence": [ { "id": "XP_013834114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834114" } ] } ], "function": [ { "annotation": "No significant bile acid transporter activity could be measured despite its similarity to bile acid:sodium symporters.", "evidence": [ { "database": "UniProtKB", "id": "F1SEA0", "url": "https://www.uniprot.org/uniprotkb/F1SEA0#function" }, { "database": "UniProtKB", "id": "ARBA00094418", "url": "https://www.uniprot.org/uniprotkb/ARBA00094418#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEA0", "url": "https://www.uniprot.org/uniprotkb/F1SEA0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC10A4", "url": "https://www.uniprot.org/uniprotkb/F1SEA0", "locus": { "chromosome": "8", "start_pos": 38385863, "end_pos": 38378872, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008823", "url": "https://www.ensembl.org/id/ENSSSCG00000008823" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008823", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008823", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520624", "url": "https://www.ncbi.nlm.nih.gov/gene/100520624", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004710", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004710", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520624", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520624", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NIMMETT", "url": "https://omabrowser.org/oma/group/NIMMETT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SEA0", "url": "https://www.orthodb.org/?gene=F1SEA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10361", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10361", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10361:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10361:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013834114", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013834114", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SEA0", "url": "https://www.uniprot.org/uniprotkb/F1SEA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SEA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGVDNATLLFAPSSLQPDNYTLPPNASSLSPVSDVPLAPASSAGPSPALSVAPGPSVSFGPSVSFSPSVNFSPSVNFSPSVSFSPGPTFSPVPTFSPGPTPTPAPTAGSFAGGATSPGPTPFWDTPLNHGLNVFVGAALCITMLGLGCTVEVNHFGAHVRRPVGALLAALCQFGFLPLLAFLLALIFSLDGVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWIYSRPWINTPLVQLLPIGTVTLTLCSTLIPIGLGVFIRYKYNRVADYIVKVSLWSLLMTLVILFIMTGTMLGPELLASIHAPVYVVAVFMPLAGYASGYGLAALFHLPPNCKRTVCLETGSQNVQLCTAILKLVFPPQYIGSMYMFPLLYALFQSAEAGIFVLIYKVYGGGIGHKQDPLDEDEDTDISYKKLKEEEMADTSYGTVKADNLIMMETTQTSL", "length": 464, "header": "tr|F1SEA0-1|F1SEA0_PIG Isoform 1 of Putative sodium/bile acid cotransporter 4 OS=Sus scrofa OX=9823 GN=SLC10A4 PE=3 SV=3 CANONICAL=F1SEA0-1" }, "isoforms": [ { "isoform_ac": "F1SEA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SEA0/entry#F1SEA0-1", "sequence": { "sequence": "MDGVDNATLLFAPSSLQPDNYTLPPNASSLSPVSDVPLAPASSAGPSPALSVAPGPSVSFGPSVSFSPSVNFSPSVNFSPSVSFSPGPTFSPVPTFSPGPTPTPAPTAGSFAGGATSPGPTPFWDTPLNHGLNVFVGAALCITMLGLGCTVEVNHFGAHVRRPVGALLAALCQFGFLPLLAFLLALIFSLDGVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWIYSRPWINTPLVQLLPIGTVTLTLCSTLIPIGLGVFIRYKYNRVADYIVKVSLWSLLMTLVILFIMTGTMLGPELLASIHAPVYVVAVFMPLAGYASGYGLAALFHLPPNCKRTVCLETGSQNVQLCTAILKLVFPPQYIGSMYMFPLLYALFQSAEAGIFVLIYKVYGGGIGHKQDPLDEDEDTDISYKKLKEEEMADTSYGTVKADNLIMMETTQTSL", "length": 464, "header": "tr|F1SEA0-1|F1SEA0_PIG Isoform 1 of Putative sodium/bile acid cotransporter 4 OS=Sus scrofa OX=9823 GN=SLC10A4 PE=3 SV=3 CANONICAL=F1SEA0-1" }, "locus": { "chromosome": "8", "start_pos": 38385244, "end_pos": 38379050, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009653.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009653.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009404.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009404.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 101, "start_aa": "Thr", "end_pos": 101, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr101", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 103, "start_aa": "Thr", "end_pos": 103, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr103", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 107, "start_aa": "Thr", "end_pos": 107, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr107", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 121, "start_aa": "Thr", "end_pos": 121, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr121", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEA0", "url": "https://www.uniprot.org/uniprotkb/F1SEA0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520624", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520624", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3UEZ8-1", "protein_name": "Putative sodium/bile acid cotransporter 4", "gene_name": "Slc10a4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSLDNTTLLLAPSSLLPDNLTLSPNAGSPSASTLSPLAVTSSPGPGLSLAPSPSIGFSPEATPTPEPTSSSLTVGVAGQGSSAFPRPWIPHEPPFWDTPLNHGLNVFVGAALCITMLGLGCTVDVNHFGAHVRRPVGALLAALCQFGFLPLLAFLLALIFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWIYSRAWINTPLVQLLPLGAVTLTLCSTLIPIGLGVFIRYKYNRVADYIVKVSLWSLLVTLVVLFIMTGTMLGPELLASIPATVYVVAIFMPLAGYASGYGLATLFHLPPNCKRTVCLETGSQNVQLCTAILKLAFPPRFIGSMYMFPLLYALFQSAEAGVFVLIYKMYGSEILHKREALDEDEDTDISYKKLKEEEMADTSYGTVGTDDLVMMETTQTAL", "length": 437 }, "evidence": [ { "id": "F1SEA0", "url": "https://omabrowser.org/oma/group/F1SEA0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5PT56-1", "protein_name": "Putative sodium/bile acid cotransporter 4", "gene_name": "Slc10a4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDGLDNTTRLLAPSSLLPDNLTLSPNASSTSASTLSPLPVTSSPSPGLSLAPTPSIGFSPDLTPTPEPTSSSLAGGVAGQDSSTFPRPWIPHEPPFWDTPLNHGLNVFVGAALCITMLGLGCTVDVNHFGAHVRRPVGALLAALCQFGFLPLLAFLLALAFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWIYSRAWINTPLVQLLPLGAVTLTLCSTLIPIGLGVFIRYKYNRVADYIVKVSLCSLLVTLVVLFIMTGTMLGPELLASIPAAVYVVAIFMPLAGYASGYGLATLFHLPPNCKRTVCLETGSQNVQLCTAILKLAFPPRFIGSMYMFPLLYALFQSAEAGVFVLIYKMYGSEILHKREALDEDDDTDISYKKLKEEELADTSYGTVGTDDLVLMETTQTSL", "length": 437 }, "evidence": [ { "id": "F1SEA0", "url": "https://omabrowser.org/oma/group/F1SEA0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8RXE8-1", "protein_name": "Probable sodium/metabolite cotransporter BASS3, chloroplastic", "gene_name": "BASS3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTLIASLSLPPPAIQRQSLSEFHNLPAKSQSFNCQFRSSSSPLSSLHSSSLSNFLDFRLRRRNSGLVPVVACSTTPFMGRVGLHWRDGNMSLLSFCGGTDVTEKADSSQFWSALLPFVVALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPLSVGFVAQYVLKPLLGVLVANAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVAMSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAKPVVTLLQPVMPFVAMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFSKIPGLRQEEEVSRTISLCTGMQSSTLAGLLASQFLGSSQAVPAACSVVVMAIMGLCLASFWGNGFRIRDVLSLSTPQSTGYTAES", "length": 431 }, "evidence": [ { "id": "F1SEA0", "url": "https://omabrowser.org/oma/group/F1SEA0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96EP9-1", "protein_name": "Putative sodium/bile acid cotransporter 4", "gene_name": "SLC10A4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDGNDNVTLLFAPLLRDNYTLAPNASSLGPGTDLALAPASSAGPGPGLSLGPGPSFGFSPGPTPTPEPTTSGLAGGAASHGPSPFPRPWAPHALPFWDTPLNHGLNVFVGAALCITMLGLGCTVDVNHFGAHVRRPVGALLAALCQFGLLPLLAFLLALAFKLDEVAAVAVLLCGCCPGGNLSNLMSLLVDGDMNLSIIMTISSTLLALVLMPLCLWIYSWAWINTPIVQLLPLGTVTLTLCSTLIPIGLGVFIRYKYSRVADYIVKVSLWSLLVTLVVLFIMTGTMLGPELLASIPAAVYVIAIFMPLAGYASGYGLATLFHLPPNCKRTVCLETGSQNVQLCTAILKLAFPPQFIGSMYMFPLLYALFQSAEAGIFVLIYKMYGSEMLHKRDPLDEDEDTDISYKKLKEEEMADTSYGTVKAENIIMMETAQTSL", "length": 437 }, "evidence": [ { "id": "F1SEA0", "url": "https://omabrowser.org/oma/group/F1SEA0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SEA0", "url": "https://www.uniprot.org/uniprotkb/F1SEA0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "bile acid and bile salt transport", "id": "GO:0015721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015721", "evidence": [ { "database": "UniProtKB", "id": "F1SEA0", "url": "https://www.uniprot.org/uniprotkb/F1SEA0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "bile acid:sodium symporter activity", "id": "GO:0008508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008508", "evidence": [ { "database": "UniProtKB", "id": "F1SEA0", "url": "https://www.uniprot.org/uniprotkb/F1SEA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 101, 103, 107, 121 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 208, "end_pos": 210 }, { "start_pos": 20, "end_pos": 22 }, { "start_pos": 222, "end_pos": 224 }, { "start_pos": 26, "end_pos": 28 }, { "start_pos": 6, "end_pos": 8 }, { "start_pos": 71, "end_pos": 73 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEA9-1", "uniprot_ac": "F1SEA9", "uniprot_id": "F1SEA9_PIG", "mass": { "chemical_mass": 142963.0, "monoisotopic_mass": 142963.0 }, "refseq": { "ac": "XP_003130711", "name": "kinesin-like protein KIF24 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130711" }, "gene_names": [ { "name": "KIF24", "type": "recommended", "evidence": [ { "id": "F1SEA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ] }, { "name": "KIF24", "type": "synonym", "evidence": [ { "id": "XP_003130711", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130711" } ] } ], "protein_names": [ { "name": "Kinesin-like protein KIF24", "type": "recommended", "evidence": [ { "id": "F1SEA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEA9/entry#names_and_taxonomy" } ] }, { "name": "kinesin-like protein KIF24 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003130711", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130711" } ] } ], "function": [ { "annotation": "Microtubule-dependent motor protein that acts as a negative regulator of ciliogenesis by mediating recruitment of CCP110 to mother centriole in cycling cells, leading to restrict nucleation of cilia at centrioles. Mediates depolymerization of microtubules of centriolar origin, possibly to suppress aberrant cilia formation. Following activation by NEK2 involved in disassembly of primary cilium during G2/M phase but does not disassemble fully formed ciliary axonemes. As cilium assembly and disassembly is proposed to coexist in a dynamic equilibrium may suppress nascent cilium assembly and, potentially, ciliar re-assembly in cells that have already disassembled their cilia ensuring the completion of cilium removal in the later stages of the cell cycle. Plays an important role in recruiting MPHOSPH9, a negative regulator of cilia formation to the distal end of mother centriole.", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9#function" }, { "database": "UniProtKB", "id": "ARBA00057466", "url": "https://www.uniprot.org/uniprotkb/ARBA00057466#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KIF24", "url": "https://www.uniprot.org/uniprotkb/F1SEA9", "locus": { "chromosome": "10", "start_pos": 32552375, "end_pos": 32467072, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010984", "url": "https://www.ensembl.org/id/ENSSSCG00000010984" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010984", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010984", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01367", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01367", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09541", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09541", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522820", "url": "https://www.ncbi.nlm.nih.gov/gene/100522820", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027640", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027640", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522820", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522820", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WGNTFAK", "url": "https://omabrowser.org/oma/group/WGNTFAK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47971", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47971", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47971:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47971:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003130711", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130711", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEA9-1", "url": "https://www.uniprot.org/uniprotkb/F1SEA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSWLYECLCEAELAQYYPHFTALGLQKIDELANVTMKDYSKLGVHDMNDRKRLFQLIKIIKIMQEEDKAVSSPEYLLQTSSLSIKPPKSRSGPRRQLHFDSPADNKDRTTSKNEFELCSLSDFSVNEQKSSYLNVLDHMVPDDAQYPTKTRILNAVAADFCVQRETNTSLFSSNHFSPIQRECDIPIMQRVSHVSGYNYGIPHSYIRQNTSEKENPWTEMDKIRVCVRKRPLGMREVRRGEINIITIEDKETLLVHEKKEAVDLTQYVLQHVFYFDEVFGEACTNRDVYMKTTHPLIQHIFNGGNATCFAYGQTGAGKTYTMIGTHQNPGLYALAAKDIFRQLEVSQPRRHLFVWISFYEIYCGQLYDLLNRRKRLFAREDSKHVVQIVGLRELQVDSVELLLEVILKGGKERSTGATGVNADSSRSHAVIQIQIKDSAKRTFGRISFIDLAGSERAADARDSDRQTKMEGAEINQSLLALKECIRALDQEHTHTPFRQSKLTQVLKDSFIGNAKTCMIANISPSHVATEHTLNTLRYADRVKELKKGIKCCTSASSRNRTSGNSSPKRIQSSPVALPGDKYSPKKVKLGLPQSLTVAPDVTRGKAHPLASHPANIPFASVPKVPGKRSGSKGSPPHGWVIQTNSLRGTTRSGHSAKKAAEDSAALCSKNKTALVWGSRAQRPRQPPSQCKKVQTVPPVQKQLVPRADLSLGSIQPTAGHSRGSQGGTPTGPASEAWPDIPLQQKEREEHLRFYHQQFQQPPLLHQELRYQPLERLSCQYPPQEGQLQKDTPPRPCSCAESHDGAQAEDLDDSDFSEDSFSHVSCQRTAKRGDALENSEGSFFLHQREQVAERQQSLFFSPGTDSDEKGLPGSWVCCGEPASHRRLALDHGHSPSPVPRDWSRGEGPASPGPLPGAVLAEKPFCNLVDCAQDPQSRGGPAFNFRQDAFRSEVPGQAEEDGFSFSLSHLAVPGSPDHRDTVGTPLREVSEDQPALAAGTVRSSHPFQGGQSGTCSEYASGLMAPLTVSLLESPDSGDLGGVDTGPAAGHAVSSGDQEAVLPTSSATERLWLSSSPPDNKPGGGLPALSPSPIREADPGEASRGRETALFAQGHAAACAEAEPGDSQSCLGKPFPTIRPREPQADRTGSSDAADLAGDQRRERLAGLGGQELWMSTDPIRLPFYNEDITRLKRRPTPRYLARPGSPTTAGPLRQPALGHAQQVVIRAHQEQLHEMAKLGFKEETLMSQLAPNDFEDFVTQLDEIMALKSKCIQSLRSQLQLYLACHRPATAPERTAVS", "length": 1297, "header": "tr|F1SEA9-1|F1SEA9_PIG Isoform 1 of Kinesin-like protein KIF24 OS=Sus scrofa OX=9823 GN=KIF24 PE=3 SV=2 CANONICAL=F1SEA9-1" }, "isoforms": [ { "isoform_ac": "F1SEA9-1", "url": "https://www.uniprot.org/uniprotkb/F1SEA9/entry#F1SEA9-1", "sequence": { "sequence": "MTSWLYECLCEAELAQYYPHFTALGLQKIDELANVTMKDYSKLGVHDMNDRKRLFQLIKIIKIMQEEDKAVSSPEYLLQTSSLSIKPPKSRSGPRRQLHFDSPADNKDRTTSKNEFELCSLSDFSVNEQKSSYLNVLDHMVPDDAQYPTKTRILNAVAADFCVQRETNTSLFSSNHFSPIQRECDIPIMQRVSHVSGYNYGIPHSYIRQNTSEKENPWTEMDKIRVCVRKRPLGMREVRRGEINIITIEDKETLLVHEKKEAVDLTQYVLQHVFYFDEVFGEACTNRDVYMKTTHPLIQHIFNGGNATCFAYGQTGAGKTYTMIGTHQNPGLYALAAKDIFRQLEVSQPRRHLFVWISFYEIYCGQLYDLLNRRKRLFAREDSKHVVQIVGLRELQVDSVELLLEVILKGGKERSTGATGVNADSSRSHAVIQIQIKDSAKRTFGRISFIDLAGSERAADARDSDRQTKMEGAEINQSLLALKECIRALDQEHTHTPFRQSKLTQVLKDSFIGNAKTCMIANISPSHVATEHTLNTLRYADRVKELKKGIKCCTSASSRNRTSGNSSPKRIQSSPVALPGDKYSPKKVKLGLPQSLTVAPDVTRGKAHPLASHPANIPFASVPKVPGKRSGSKGSPPHGWVIQTNSLRGTTRSGHSAKKAAEDSAALCSKNKTALVWGSRAQRPRQPPSQCKKVQTVPPVQKQLVPRADLSLGSIQPTAGHSRGSQGGTPTGPASEAWPDIPLQQKEREEHLRFYHQQFQQPPLLHQELRYQPLERLSCQYPPQEGQLQKDTPPRPCSCAESHDGAQAEDLDDSDFSEDSFSHVSCQRTAKRGDALENSEGSFFLHQREQVAERQQSLFFSPGTDSDEKGLPGSWVCCGEPASHRRLALDHGHSPSPVPRDWSRGEGPASPGPLPGAVLAEKPFCNLVDCAQDPQSRGGPAFNFRQDAFRSEVPGQAEEDGFSFSLSHLAVPGSPDHRDTVGTPLREVSEDQPALAAGTVRSSHPFQGGQSGTCSEYASGLMAPLTVSLLESPDSGDLGGVDTGPAAGHAVSSGDQEAVLPTSSATERLWLSSSPPDNKPGGGLPALSPSPIREADPGEASRGRETALFAQGHAAACAEAEPGDSQSCLGKPFPTIRPREPQADRTGSSDAADLAGDQRRERLAGLGGQELWMSTDPIRLPFYNEDITRLKRRPTPRYLARPGSPTTAGPLRQPALGHAQQVVIRAHQEQLHEMAKLGFKEETLMSQLAPNDFEDFVTQLDEIMALKSKCIQSLRSQLQLYLACHRPATAPERTAVS", "length": 1297, "header": "tr|F1SEA9-1|F1SEA9_PIG Isoform 1 of Kinesin-like protein KIF24 OS=Sus scrofa OX=9823 GN=KIF24 PE=3 SV=2 CANONICAL=F1SEA9-1" }, "locus": { "chromosome": "10", "start_pos": 32550482, "end_pos": 32506308, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012023.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012023.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011715.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011715.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1062, "start_aa": "Thr", "end_pos": 1062, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1062", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 718, "start_aa": "Thr", "end_pos": 718, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr718", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522820", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522820", "resource": "KEGG Pathway" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A7G8-1", "protein_name": "Kinesin-like protein KIF24", "gene_name": "Kif24", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASWLYECLCEAELAQYYPHFTALGLQKIDELAKVTMKDYSRLGVHDMNDRKRLFQLIKIIKIMQEDDKAISSPEHPLQARSLYIKPQEFRSGPRRQLHFDSPDSKDKMASNEMGSLSDFSVNEQKSTYLKVPEHMLPEDSQYQTKIRTPDAAAAAAAGGGGGGAAAAAAAAAYMQTDINAPLFASNYFSSKLGNCDIPVIQRVSHVSGYNYGLPHSCVRQITSENPWTEMEKIRVCVRKRPLGVREVRRGEVNIITVEDKETLLVHEKKEAVDLTQYILQHVFYFDEVFGEACSNQDVYLKTAHPLIQHIFSGGNATCFAYGQTGAGKTYTMIGTHQNPGLYALAAKDIFRQLKISQSRRNLFVWISFYEIYCGQLYDLLNRRKRLFAREDSKHVVQIAGLRELQVDSVELLLQVILKGSKERSTGATSVNADSSRSHAVIQIQIKDSAKRTFGRISFIDLAGSERAADARDSDRQTKMEGAEINQSLLALKECIRALDQEHTHTPFRQSKLTQVLKDSFIGDAKTCMIANISPSHIATEHTLNTLRYADRVKELKKGLKCCASAASRNQTSANSSPKRIQSSPVTLPGDKCSPKKVKLGLQQSLTVAPGPTRVKAHPLASHAPNIPFASGPKAPGKKSSSQGSPTPEWDMKGSPQRGTMRSGHLTKKGAESAPLCSEKSQIGSKIAVGWEGRASGPREGLLRVRLPTRGKKVQPVQPVQPVQKELLSRARLLGNSHHLETTQDSKVGTPAVLAPEAWTNPSLQQKEREEHLRFYHQQFQQPPLLKQKLKYQPLQRLLCQHRPSEGQLQNETVFALHSNPENHDGAQAEDLDDSDFSEDSFSHVSSQPTIKKRSTLERSESSFFLHQDREHSPEKQAAERQQCLLFSSEADGSKKGPADSWVYSRDPIISHRKGALDQSHSPSMVCSDWSKEGDSASSGPSSPKDNWAEKPSSQVDFVHHRKPGEAQAFDIRLEAFRDEVPGQAGPGLENELSFPLSHVAVSGSPDQRDRVSTPLREVGENRVTRTPETVNSTTPFQEDSREQTQLCSANASGLMAPLSMSLLETPSHEDLSSLEQTAQDRAGYGFMAEMVGGPAAGHTVSSYDPEAALPVSSATECLWLSSSPPDNRPSCDLPALSPSPIHQHSPDNLPNREARQNRRPTLLPQNHVDGEPYDDNAAEIELGGSLTFPRKPSSNIHAGVPYSTPFLTSHTGTSDGVGRPWTQERKHPTGVSWQELASSLDSNKLHYNEDISWLRRKPISRCLESDSPLVPSCSPKALGTLCPLTPEQAQQVIIRAHQEQLDEMAELDFKEETLMTQMDSNDFEEFVTQLDEIMALKSKCIQSLRSQLQLYLTSLGPAAAPKRTVVS", "length": 1368 }, "evidence": [ { "id": "F1SEA9", "url": "https://omabrowser.org/oma/group/F1SEA9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5T7B8-1", "protein_name": "Kinesin-like protein KIF24", "gene_name": "KIF24", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASWLYECLCEAELAQYYSHFTALGLQKIDELAKITMKDYSKLGVHDMNDRKRLFQLIKIIKIMQEEDKAVSIPERHLQTSSLRIKSQELRSGPRRQLNFDSPADNKDRNASNDGFEMCSLSDFSANEQKSTYLKVLEHMLPDDSQYHTKTGILNATAGDSYVQTEISTSLFSPNYLSAILGDCDIPIIQRISHVSGYNYGIPHSCIRQNTSEKQNPWTEMEKIRVCVRKRPLGMREVRRGEINIITVEDKETLLVHEKKEAVDLTQYILQHVFYFDEVFGEACTNQDVYMKTTHPLIQHIFNGGNATCFAYGQTGAGKTYTMIGTHENPGLYALAAKDIFRQLEVSQPRKHLFVWISFYEIYCGQLYDLLNRRKRLFAREDSKHMVQIVGLQELQVDSVELLLEVILKGSKERSTGATGVNADSSRSHAVIQIQIKDSAKRTFGRISFIDLAGSERAADARDSDRQTKMEGAEINQSLLALKECIRALDQEHTHTPFRQSKLTQVLKDSFIGNAKTCMIANISPSHVATEHTLNTLRYADRVKELKKGIKCCTSVTSRNRTSGNSSPKRIQSSPGALSEDKCSPKKVKLGFQQSLTVAAPGSTRGKVHPLTSHPPNIPFTSAPKVSGKRGGSRGSPSQEWVIHASPVKGTVRSGHVAKKKPEESAPLCSEKNRMGNKTVLGWESRASGPGEGLVRGKLSTKCKKVQTVQPVQKQLVSRVELSFGNAHHRAEYSQDSQRGTPARPASEAWTNIPPHQKEREEHLRFYHQQFQQPPLLQQKLKYQPLKRSLRQYRPPEGQLTNETPPLFHSYSENHDGAQVEELDDSDFSEDSFSHISSQRATKQRNTLENSEDSFFLHQTWGQGPEKQVAERQQSLFSSPRTGDKKDLTKSWVDSRDPINHRRAALDHSCSPSKGPVDWSRENSTSSGPSPRDSLAEKPYCSQVDFIYRQERGGGSSFDLRKDASQSEVSGENEGNLPSPEEDGFTISLSHVAVPGSPDQRDTVTTPLREVSADGPIQVTSTVKNGHAVPGEDPRGQLGTHAEYASGLMSPLTMSLLENPDNEGSPPSEQLVQDGATHSLVAESTGGPVVSHTVPSGDQEAALPVSSATRHLWLSSSPPDNKPGGDLPALSPSPIRQHPADKLPSREADLGEACQSRETVLFSHEHMGSEQYDADAEETGLDGSWGFPGKPFTTIHMGVPHSGPTLTPRTGSSDVADQLWAQERKHPTRLGWQEFGLSTDPIKLPCNSENVTWLKPRPISRCLARPSSPLVPSCSPKTAGTLRQPTLEQAQQVVIRAHQEQLDEMAELGFKEETLMSQLASNDFEDFVTQLDEIMVLKSKCIQSLRSQLQLYLTCHGPTAAPEGTVPS", "length": 1368 }, "evidence": [ { "id": "F1SEA9", "url": "https://omabrowser.org/oma/group/F1SEA9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NWW5-1", "protein_name": "Kinesin-like protein KIF24", "gene_name": "Kif24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASWLYECLCEAELAQYYPHFTALGLQKIDELAKVTMKDYSRLGVHDMNDRKRLFQLIKIIKIMQEEDKALGIPEHPLQASSLYTKPREFRSGPRRQLHFDSPSASKDKMANNETGSLSNFSVDEQKSTYLKVLEHMLPDDSQCQTKIRAPDASAADASMQTETNAPLFSSNYFSPQLGNCDIPVIQRVSHVSGYNYGIPHSCVRQITSENPWTEMEKIRVCVRKRPLGVREVRRGEVNVITVEDKETLLVHEKKEAVDLTQYILQHVFYFDEVFGEACSNQDVYLKTAHPLIQHIFNGGSATCFAYGQTGAGKTYTMIGTHQNPGLYALAAKDIFRQLKVSQSRRNLFVWISFYEIYCGQLYDLLNRRKRLFAREDSKHVVQIAGLRELQVDSVELLLQVILKGSKERSTGATGVNADSSRSHAIIQIQIKDSAKRTFGRISFIDLAGSERAADARDSDRQTKMEGAEINQSLLALKECIRALDQEHTHTPFRQSKLTQVLKDSFIGNAKTCMIANISPSHIATEHTLNTLRYADRVKELKKGVKCCASATSQNQTSANASPKRIQSSPVTLPGDKCSPKKVKLGLQQSLTVAPGPTKVKAHPLASHVPNVPFTSGPKTPGKKSSSRGSPTPEWDMKASPRKGTTRSGHSIKKGAESAPLCSEKSQIGSKIAVGWEGRASDPGEGLLRVRLPTRGKKVQPVQPVQKQLLSRPRLLANSHHLEATQDSKVGTPAGLAPEAWTNPILQQKEREEHLRFYHQQFQQPPLLKQKLNYQPLQRLLCQHRPSEGRLQSETGFPLHSNPENRDGAQAEDLDDSDFSEDSFSHGSSQPAMKQGSTALERSGSSFFLHQDREHSPEEQAAERQQCLLFSSETDGSKKRPADSWVYSRDPIISHRRGALSQSHSPSMVCPDWSKEEDSASSGPSPKDNRAQKPSSSQVDFVHHQKPGEAQVSDIRLEAFTSEVPEQAEGSLSSPSPENGLSFPLSHVAVSGSPDQRDRVCTPLREVSENRVTHTPGRVNSSTPFQEDSGEQIQMCSANASGLMAPLTMSLLETPCHEDLSSLEQIAQDGAGYGFMAEIVGGPAAGHTVPSYDQEAALPVSSATECLWLSSSPPDNRPSGDLPALSPSPIHQHSPDKLPGREAYQTRRPILLPENHMGSKLYDDRAEETELGGSLTFPRKPSSNIHAGVPYSTPFLTSCTGSSNGVGRPWAQERKHPTGVSCQELVSSTDSNKPHYNEDIAWLRHRPISRCLDSDSPVVPSCSSKALRTYCPLTPEQAQQVIIRAHKEQLDEMAELDLKEETLMTQMDSNDFEDFVTQLDEIMALKSRCIQSLRSQLQLYLTSHRPAAAPERTVVS", "length": 1356 }, "evidence": [ { "id": "F1SEA9", "url": "https://omabrowser.org/oma/group/F1SEA9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of cilium assembly", "id": "GO:1902018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902018", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" }, { "name": "microtubule-based movement", "id": "GO:0007018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007018", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" }, { "name": "microtubule depolymerization", "id": "GO:0007019", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007019", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" }, { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" }, { "name": "microtubule motor activity", "id": "GO:0003777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003777", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SEA9", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" }, { "start_pos": 476, "end_pos": 478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 522, "end_pos": 524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 560, "end_pos": 562, "annotation": "n_glycosylation_sequon" }, { "start_pos": 565, "end_pos": 567, "annotation": "n_glycosylation_sequon" }, { "start_pos": 671, "end_pos": 673, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" }, { "id": "PS50067", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50067" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kinesin motor", "eco_id": "ECO_0000259", "start_pos": 223, "end_pos": 546, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SEA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEA9" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 64, "start_aa": "Met", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 718, 1062 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 210, "end_pos": 212 }, { "start_pos": 306, "end_pos": 308 }, { "start_pos": 34, "end_pos": 36 }, { "start_pos": 476, "end_pos": 478 }, { "start_pos": 522, "end_pos": 524 }, { "start_pos": 560, "end_pos": 562 }, { "start_pos": 565, "end_pos": 567 }, { "start_pos": 671, "end_pos": 673 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEC1-1", "uniprot_ac": "F1SEC1", "uniprot_id": "F1SEC1_PIG", "mass": { "chemical_mass": 44363.0, "monoisotopic_mass": 44363.0 }, "refseq": { "ac": "XP_003130719", "name": "AT-rich interactive domain-containing protein 3C isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130719" }, "gene_names": [ { "name": "ARID3C", "type": "recommended", "evidence": [ { "id": "F1SEC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ] }, { "name": "ARID3C", "type": "synonym", "evidence": [ { "id": "XP_003130719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130719" } ] } ], "protein_names": [ { "name": "AT-rich interactive domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "F1SEC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC1/entry#names_and_taxonomy" } ] }, { "name": "ARID domain-containing protein", "type": "synonym", "evidence": [ { "id": "F1SEC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC1/entry#names_and_taxonomy" } ] }, { "name": "AT-rich interactive domain-containing protein 3C isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003130719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130719" } ] } ], "function": [ { "annotation": "Transcription factor involved in monocyte-to-macrophage differentiation. Forms a complex with NPM1 to translocate to the nucleus, acting as a transcription factor that promotes the expression of the genes involved in macrophage differentiation, such as STAT3, STAT1 and JUNB.", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1#function" }, { "database": "UniProtKB", "id": "ARBA00058617", "url": "https://www.uniprot.org/uniprotkb/ARBA00058617#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARID3C", "url": "https://www.uniprot.org/uniprotkb/F1SEC1", "locus": { "chromosome": "10", "start_pos": 32180604, "end_pos": 32172871, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010971", "url": "https://www.ensembl.org/id/ENSSSCG00000010971" } ] } } ], "crossref": [ { "id": "F1SEC1", "url": "https://alphafold.ebi.ac.uk/entry/F1SEC1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010971", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010971", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524334", "url": "https://www.ncbi.nlm.nih.gov/gene/100524334", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036431", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036431", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524334", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524334", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RHAYTAT", "url": "https://omabrowser.org/oma/group/RHAYTAT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SEC1", "url": "https://www.orthodb.org/?gene=F1SEC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15348", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15348", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15348:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15348:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01388", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01388", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003130719", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130719", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEC1-1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEALQRQQAARLAQRVGPLAPPRPPPPPPPRPSFPGTRTLQAPEGGLGKVGAEEEEDAQEDEEGEEAGPEDEAAEGESHPGTQDTSSPSSQPPGPHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETQALSSPGELQAAIDSNRREGRRQAYNATPLFGLAGPPPRGTPGPALGPGPAPPSATPTPAPRSAQGSASGLPAHACAQLSPSPVKKEESGIPTPRLALPVGLAFGPAREKVAPEEPPEKRAVLMGPMDPPRHGAPPSFLSRGKIPLREERLDGPLNLAGSGISSINMALEINGVVYTGVLFARRQTVPASQGPTNPAPPPPTGPPSSTSP", "length": 416, "header": "tr|F1SEC1-1|F1SEC1_PIG Isoform 1 of AT-rich interactive domain-containing protein 3 OS=Sus scrofa OX=9823 GN=ARID3C PE=4 SV=1 CANONICAL=F1SEC1-1" }, "isoforms": [ { "isoform_ac": "F1SEC1-1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1/entry#F1SEC1-1", "sequence": { "sequence": "MEALQRQQAARLAQRVGPLAPPRPPPPPPPRPSFPGTRTLQAPEGGLGKVGAEEEEDAQEDEEGEEAGPEDEAAEGESHPGTQDTSSPSSQPPGPHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETQALSSPGELQAAIDSNRREGRRQAYNATPLFGLAGPPPRGTPGPALGPGPAPPSATPTPAPRSAQGSASGLPAHACAQLSPSPVKKEESGIPTPRLALPVGLAFGPAREKVAPEEPPEKRAVLMGPMDPPRHGAPPSFLSRGKIPLREERLDGPLNLAGSGISSINMALEINGVVYTGVLFARRQTVPASQGPTNPAPPPPTGPPSSTSP", "length": 416, "header": "tr|F1SEC1-1|F1SEC1_PIG Isoform 1 of AT-rich interactive domain-containing protein 3 OS=Sus scrofa OX=9823 GN=ARID3C PE=4 SV=1 CANONICAL=F1SEC1-1" }, "locus": { "chromosome": "10", "start_pos": 32179600, "end_pos": 32173070, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012008.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012008.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011700.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011700.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 247, "start_aa": "Thr", "end_pos": 247, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr247", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 262, "start_aa": "Thr", "end_pos": 262, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr262", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 264, "start_aa": "Thr", "end_pos": 264, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr264", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 408, "start_aa": "Thr", "end_pos": 408, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr408", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524334", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524334", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6NKF2-1", "protein_name": "AT-rich interactive domain-containing protein 3C", "gene_name": "ARID3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEALQKQQAARLAQGVGPLAPACPLLPPQPPLPDHRTLQAPEGALGNVGAEEEEDAEEDEEKREEAGAEEEAAEESRPGAQGPSSPSSQPPGLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTSGLPAHACAQLSPSPIKKEESGIPNPCLALPVGLALGPTREKLAPEEPPEKRAVLMGPMDPPRPCMPPSFLPRGKVPLREERLDGPLNLAGSGISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPPSSILP", "length": 412 }, "evidence": [ { "id": "F1SEC1", "url": "https://omabrowser.org/oma/group/F1SEC1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6PWV5-1", "protein_name": "AT-rich interactive domain-containing protein 3C", "gene_name": "Arid3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEALQRQQAARLAQGVGPLAPPRLPLPQPPLLGARTLQAPEGAIGVVGAEEEEGAEDEEGETPLAEEETAEQSHPGARCPNSPSSQSPGIQPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTAVPLFNLAGPTPRGAPGPASSHGPAPTATPNCPGPTQGSASGLPAHACAQLSPSPVKKEESGIPPPRLALPMGLASEATREKLAPEEPPEKRAVLMGPVDSPRLGAPPSFLPRGKAPLREERLDGPLNLAGSGISSINVALEINGVVYTGILFARRQPVPASLGPTNPPPLPSTGPPSSTLP", "length": 409 }, "evidence": [ { "id": "F1SEC1", "url": "https://omabrowser.org/oma/group/F1SEC1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZQB1-1", "protein_name": "AT-rich interactive domain-containing protein 3", "gene_name": "Arid3c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEALQRQQAARLAQGVGPLAPPRLPLPQPPLLGARTLQAPEGALGVVGAEEEEGAEEDEEGETPLVEEETAEQSHPGARCPNSPSGQSPGIQPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSNRREGRRQAYTTVPLFNLAGPTPRGAPGPASSHGPAPTTTPNCPGSTQGSASGLPAHACAQLSPSPVKKEESGIPPPRLAIPVGLALEAAREKLAPEEPPEKRAVLMGPMDPPRLGATPSFLPRGKAPLREERLDGPLNLAGSGISSINMALEINGVVYTGILFARRQPVPASLGPTNPPPPPSTGPPSSTLP", "length": 410 }, "evidence": [ { "id": "F1SEC1", "url": "https://omabrowser.org/oma/group/F1SEC1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "pmid": "" }, { "name": "membrane raft", "id": "GO:0045121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045121", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "pmid": "" }, { "name": "macrophage differentiation", "id": "GO:0030225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030225", "evidence": [ { "database": "UniProtKB", "id": "F1SEC1", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEC1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 416, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEC1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEC1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" }, { "id": "PS51011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ARID", "eco_id": "ECO_0000259", "start_pos": 115, "end_pos": 207, "start_aa": "Asp", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SEC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC1" }, { "id": "PS51486", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51486" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "REKLES", "eco_id": "ECO_0000259", "start_pos": 308, "end_pos": 393, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 247, 262, 264, 408 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 232, "end_pos": 234 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEC6-1", "uniprot_ac": "F1SEC6", "uniprot_id": "F1SEC6_PIG", "mass": { "chemical_mass": 86186.0, "monoisotopic_mass": 86186.0 }, "refseq": { "ac": "XP_013839280", "name": "inactive carboxypeptidase-like protein X2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839280" }, "gene_names": [ { "name": "CPXM2", "type": "recommended", "evidence": [ { "id": "F1SEC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC6" } ] }, { "name": "CPXM2", "type": "synonym", "evidence": [ { "id": "XP_013839280", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839280" } ] } ], "protein_names": [ { "name": "Inactive carboxypeptidase-like protein X2", "type": "recommended", "evidence": [ { "id": "F1SEC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC6/entry#names_and_taxonomy" } ] }, { "name": "inactive carboxypeptidase-like protein X2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013839280", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839280" } ] } ], "function": [ { "annotation": "May be involved in cell-cell interactions.", "evidence": [ { "database": "UniProtKB", "id": "F1SEC6", "url": "https://www.uniprot.org/uniprotkb/F1SEC6#function" }, { "database": "UniProtKB", "id": "ARBA00053417", "url": "https://www.uniprot.org/uniprotkb/ARBA00053417#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEC6", "url": "https://www.uniprot.org/uniprotkb/F1SEC6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CPXM2", "url": "https://www.uniprot.org/uniprotkb/F1SEC6", "locus": { "chromosome": "14", "start_pos": 133246526, "end_pos": 133376489, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010728", "url": "https://www.ensembl.org/id/ENSSSCG00000010728" } ] } } ], "crossref": [ { "id": "F1SEC6", "url": "https://alphafold.ebi.ac.uk/entry/F1SEC6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010728", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010728", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00057", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00057", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03869", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03869", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11308", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11308", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153578", "url": "https://www.ncbi.nlm.nih.gov/gene/100153578", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000834", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000834", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153578", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153578", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SEC6", "url": "https://www.orthodb.org/?gene=F1SEC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11532", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11532", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11532:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11532:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00754", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00754", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013839280", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013839280", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SEC6", "url": "https://www.uniprot.org/uniprotkb/F1SEC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEC6-1", "url": "https://www.uniprot.org/uniprotkb/F1SEC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARRGAAAPALALALLAVALAGVGARGAAVEDPDYYVQEIWDREPYDARPEPEPEPFSPPPPRPAGPGEGERERERRPAEPRLPKKATKPKKAPKREKLAPEKPPAGKNSNRKGMKTKSSEKAASDERHVPMGRDAVREGCPPLGLETLKITDFQLHASTSKRYGLGAHRGRLNIQAGINENDFYDGAWCAGRNDLHQWIEVDARRLTKFTGVITQGRNSLWLSDWVTSYKVMVSNDSHTWVTVKNGSGDMIFEGNSEKEIPVLNELPVPLVARYIRINPQSWFDNGSICMRMEILGCPLPDPNNYYHRRNEMTTTDDLDFKHHNYKEMRQLMKVVNEMCPNITRIYNIGKSHQGLKLYAVEISDHPGEHEVGEPEFHYIAGAHGNEVLGRELMLLLMQFLCQEYLAGNPRIVHLVEETRIHILPSLNPDGYEKAYEGGSELGGWSLGRWTHDGIDINNNFPDLNTLLWEAEDRQNIPRKVPNHYIAIPEWFLSENATVAAETRAVIAWMEKIPFVLGGNLQGGELVVAYPYDMVRSLWKTQEHTPTPDDHVFRWLAYSYASTHRLMTDARRRVCHTEDFQKEDGTVNGASWHTVAGSLNDFSYLHTNCFELSIYVGCDKYPHESELPEEWENNRESLIVFMEQVHRGIKGVVRDLHGKGIPNAVISVEGINHDIRTAGDGDYWRLLNPGEYVVTAKAEGFTSSTRNCMVGYDMGATRCDFTLSKTNLARIREIMEKFGKQPVSLPARRQKLRGRKRRQRG", "length": 761, "header": "tr|F1SEC6-1|F1SEC6_PIG Isoform 1 of Inactive carboxypeptidase-like protein X2 OS=Sus scrofa OX=9823 GN=CPXM2 PE=3 SV=3 CANONICAL=F1SEC6-1" }, "isoforms": [ { "isoform_ac": "F1SEC6-1", "url": "https://www.uniprot.org/uniprotkb/F1SEC6/entry#F1SEC6-1", "sequence": { "sequence": "MARRGAAAPALALALLAVALAGVGARGAAVEDPDYYVQEIWDREPYDARPEPEPEPFSPPPPRPAGPGEGERERERRPAEPRLPKKATKPKKAPKREKLAPEKPPAGKNSNRKGMKTKSSEKAASDERHVPMGRDAVREGCPPLGLETLKITDFQLHASTSKRYGLGAHRGRLNIQAGINENDFYDGAWCAGRNDLHQWIEVDARRLTKFTGVITQGRNSLWLSDWVTSYKVMVSNDSHTWVTVKNGSGDMIFEGNSEKEIPVLNELPVPLVARYIRINPQSWFDNGSICMRMEILGCPLPDPNNYYHRRNEMTTTDDLDFKHHNYKEMRQLMKVVNEMCPNITRIYNIGKSHQGLKLYAVEISDHPGEHEVGEPEFHYIAGAHGNEVLGRELMLLLMQFLCQEYLAGNPRIVHLVEETRIHILPSLNPDGYEKAYEGGSELGGWSLGRWTHDGIDINNNFPDLNTLLWEAEDRQNIPRKVPNHYIAIPEWFLSENATVAAETRAVIAWMEKIPFVLGGNLQGGELVVAYPYDMVRSLWKTQEHTPTPDDHVFRWLAYSYASTHRLMTDARRRVCHTEDFQKEDGTVNGASWHTVAGSLNDFSYLHTNCFELSIYVGCDKYPHESELPEEWENNRESLIVFMEQVHRGIKGVVRDLHGKGIPNAVISVEGINHDIRTAGDGDYWRLLNPGEYVVTAKAEGFTSSTRNCMVGYDMGATRCDFTLSKTNLARIREIMEKFGKQPVSLPARRQKLRGRKRRQRG", "length": 761, "header": "tr|F1SEC6-1|F1SEC6_PIG Isoform 1 of Inactive carboxypeptidase-like protein X2 OS=Sus scrofa OX=9823 GN=CPXM2 PE=3 SV=3 CANONICAL=F1SEC6-1" }, "locus": { "chromosome": "14", "start_pos": 133376342, "end_pos": 133247619, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011739.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011739.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011437.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011437.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEC6", "url": "https://www.uniprot.org/uniprotkb/F1SEC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153578", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153578", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SEC6", "url": "https://www.uniprot.org/uniprotkb/F1SEC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SEC6", "url": "https://www.uniprot.org/uniprotkb/F1SEC6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SEC6", "url": "https://www.uniprot.org/uniprotkb/F1SEC6" } ], "pmid": "" }, { "name": "metallocarboxypeptidase activity", "id": "GO:0004181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004181", "evidence": [ { "database": "UniProtKB", "id": "F1SEC6", "url": "https://www.uniprot.org/uniprotkb/F1SEC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 496, "end_pos": 498, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEC6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 761, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEC6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEC6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC6" }, { "id": "PS50022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50022" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F5/8 type C", "eco_id": "ECO_0000259", "start_pos": 139, "end_pos": 298, "start_aa": "Glu", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SEC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC6" }, { "id": "PS52035", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52035" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M14", "eco_id": "ECO_0000259", "start_pos": 322, "end_pos": 645, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 236, "end_pos": 238 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 286, "end_pos": 288 }, { "start_pos": 342, "end_pos": 344 }, { "start_pos": 496, "end_pos": 498 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEC8-1", "uniprot_ac": "F1SEC8", "uniprot_id": "F1SEC8_PIG", "mass": { "chemical_mass": 30917.0, "monoisotopic_mass": 30917.0 }, "refseq": {}, "gene_names": [ { "name": "HMX2", "type": "recommended", "evidence": [ { "id": "F1SEC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC8" } ] } ], "protein_names": [ { "name": "H6 family homeobox 2", "type": "synonym", "evidence": [ { "id": "F1SEC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEC8", "url": "https://www.uniprot.org/uniprotkb/F1SEC8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HMX2", "url": "https://www.uniprot.org/uniprotkb/F1SEC8", "locus": { "chromosome": "14", "start_pos": 132699544, "end_pos": 132696380, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010725", "url": "https://www.ensembl.org/id/ENSSSCG00000010725" } ] } } ], "crossref": [ { "id": "F1SEC8", "url": "https://alphafold.ebi.ac.uk/entry/F1SEC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010725", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010725", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46110:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46110:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SEC8", "url": "https://www.uniprot.org/uniprotkb/F1SEC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SEC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSGVFARSAEHRMGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPAGWPARKRSLSVSSEEEEPDDGWKAPACFCPDPHGPKEPGPKHHPPIPFPCLGTPKGSGGAGPASSERTPFLSSSHPDFKEEKERLLPAGSPSPGPERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVGMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY", "length": 286, "header": "tr|F1SEC8-1|F1SEC8_PIG Isoform 1 of H6 family homeobox 2 OS=Sus scrofa OX=9823 GN=HMX2 PE=3 SV=3 CANONICAL=F1SEC8-1" }, "isoforms": [ { "isoform_ac": "F1SEC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SEC8/entry#F1SEC8-1", "sequence": { "sequence": "MPSGVFARSAEHRMGSKEDAGKGCPAAGGVSSFTIQSILGGGPSEAPREPAGWPARKRSLSVSSEEEEPDDGWKAPACFCPDPHGPKEPGPKHHPPIPFPCLGTPKGSGGAGPASSERTPFLSSSHPDFKEEKERLLPAGSPSPGPERPRDGGAERQAGAAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQTLVGMPLVFRDSSLLRVPVPRSLAFPAPLYYPGSNLSALPLYNLYNKLDY", "length": 286, "header": "tr|F1SEC8-1|F1SEC8_PIG Isoform 1 of H6 family homeobox 2 OS=Sus scrofa OX=9823 GN=HMX2 PE=3 SV=3 CANONICAL=F1SEC8-1" }, "locus": { "chromosome": "14", "start_pos": 132698916, "end_pos": 132696735, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011736.3", "url": "https://www.ensembl.org/id/ENSSSCT00000011736.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011434.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011434.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEC8", "url": "https://www.uniprot.org/uniprotkb/F1SEC8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SEC8", "url": "https://www.uniprot.org/uniprotkb/F1SEC8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SEC8", "url": "https://www.uniprot.org/uniprotkb/F1SEC8" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SEC8", "url": "https://www.uniprot.org/uniprotkb/F1SEC8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SEC8", "url": "https://www.uniprot.org/uniprotkb/F1SEC8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SEC8", "url": "https://www.uniprot.org/uniprotkb/F1SEC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEC8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 286, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEC8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEC8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEC8" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 160, "end_pos": 220, "start_aa": "Ala", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 271, "end_pos": 273 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SED1-1", "uniprot_ac": "F1SED1", "uniprot_id": "F1SED1_PIG", "mass": { "chemical_mass": 46512.0, "monoisotopic_mass": 46512.0 }, "refseq": { "ac": "XP_001927962", "name": "zinc finger protein Pegasus", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927962" }, "gene_names": [ { "name": "IKZF5", "type": "recommended", "evidence": [ { "id": "F1SED1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ] }, { "name": "IKZF5", "type": "synonym", "evidence": [ { "id": "XP_001927962", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927962" } ] } ], "protein_names": [ { "name": "Zinc finger protein Pegasus", "type": "recommended", "evidence": [ { "id": "F1SED1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED1/entry#names_and_taxonomy" } ] }, { "name": "Ikaros family zinc finger protein 5", "type": "synonym", "evidence": [ { "id": "F1SED1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED1/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein Pegasus", "type": "synonym", "evidence": [ { "id": "XP_001927962", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927962" } ] } ], "function": [ { "annotation": "Transcriptional repressor that binds the core 5'GNNTGTNG-3' DNA consensus sequence. Involved in megakaryocyte differentiation.", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1#function" }, { "database": "UniProtKB", "id": "ARBA00060047", "url": "https://www.uniprot.org/uniprotkb/ARBA00060047#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IKZF5", "url": "https://www.uniprot.org/uniprotkb/F1SED1", "locus": { "chromosome": "14", "start_pos": 132544591, "end_pos": 132563124, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023565", "url": "https://www.ensembl.org/id/ENSSSCG00000023565" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023565", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023565", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153217", "url": "https://www.ncbi.nlm.nih.gov/gene/100153217", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153217", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153217", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FMIQQPT", "url": "https://omabrowser.org/oma/group/FMIQQPT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SED1", "url": "https://www.orthodb.org/?gene=F1SED1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404:SF55", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404:SF55", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_001927962", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927962", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SED1-1", "url": "https://www.uniprot.org/uniprotkb/F1SED1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAEALQGAGTDGDQNGLDHPSVEVSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYESMAKTTPTGGLPRDPQDLMVDNPLNQLSTLAGQLSSLPPENQNPASPDVVPCPDEKPFMMQQPSAQAVVSAVSASIPQSASPTSPEPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPSTPAPTLPIQDPQLLHHCQHCDMYFADNILYTIHMGCHGYENPFQCNICGCKCKNKYDFACHFARGQHNQH", "length": 419, "header": "tr|F1SED1-1|F1SED1_PIG Isoform 1 of Zinc finger protein Pegasus OS=Sus scrofa OX=9823 GN=IKZF5 PE=3 SV=1 CANONICAL=F1SED1-1" }, "isoforms": [ { "isoform_ac": "F1SED1-1", "url": "https://www.uniprot.org/uniprotkb/F1SED1/entry#F1SED1-1", "sequence": { "sequence": "MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAEALQGAGTDGDQNGLDHPSVEVSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYESMAKTTPTGGLPRDPQDLMVDNPLNQLSTLAGQLSSLPPENQNPASPDVVPCPDEKPFMMQQPSAQAVVSAVSASIPQSASPTSPEPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPSTPAPTLPIQDPQLLHHCQHCDMYFADNILYTIHMGCHGYENPFQCNICGCKCKNKYDFACHFARGQHNQH", "length": 419, "header": "tr|F1SED1-1|F1SED1_PIG Isoform 1 of Zinc finger protein Pegasus OS=Sus scrofa OX=9823 GN=IKZF5 PE=3 SV=1 CANONICAL=F1SED1-1" }, "locus": { "chromosome": "14", "start_pos": 132552452, "end_pos": 132547695, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028000.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028000.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026323.1", "url": "https://www.ensembl.org/id/ENSSSCP00000026323.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 350, "start_aa": "Thr", "end_pos": 350, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr350", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153217", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153217", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HYF3-1", "protein_name": "Zinc finger protein Pegasus", "gene_name": "Ikzf5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAETLQGAGTDGDQNGLDHPSVEVSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYETMAKTTPTGGLPRDPQELMVDNPLNQLSTLAGQLSSLPPENQNPASPDVVPCPDEKPFMIQQPSAQAVVSAVSASIPQSSSPTSPEPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPSTPAPTLPVQDPQLLHHCQHCDMYFADNILYTIHMGCHGYENPFQCNICGCKCKNKYDFACHFARGQHNQH", "length": 419 }, "evidence": [ { "id": "F1SED1", "url": "https://omabrowser.org/oma/group/F1SED1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A4IFJ6-1", "protein_name": "Zinc finger protein Pegasus", "gene_name": "IKZF5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAEALQGAGTDGDQNGLDHPSVEVSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLNYSRRALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYESMAKTTPTGGLPRDPQELMVDNPLNQLSTLAGQLSSLPPENQNPASPDVVPCAEEKPFMMQQPSAQAVVSAVSASLPQSSSPASPEPRPPHGQRNYSPVAGPSSEPSAHTSTPSMGNSQPSTPAPTLPVQDPQLLHHCQHCDMYFADNILYTIHMGCHGYENPFQCNICGCKCKNKYDFACHFARGQHNQH", "length": 419 }, "evidence": [ { "id": "F1SED1", "url": "https://omabrowser.org/oma/group/F1SED1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZBK4-1", "protein_name": "Zinc finger protein Pegasus", "gene_name": "Ikzf5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAETLQGAGTDGDQNGLDHPSVEVSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYETMAKTTPTGGLPRDPQELMVDNPLNQLSTLAGQLSSLPPENQNPASPDVDPCPDEKPFMIQQPSAQAVVSAVSASIPQSSSPTSPDPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPSTPAPTLPVQDPQLLHHCQHCDMYFADNILYTIHMGCHGYENPFQCNICGCKCKNKYDFACHFARGQHNQH", "length": 419 }, "evidence": [ { "id": "F1SED1", "url": "https://omabrowser.org/oma/group/F1SED1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5ZLR2-1", "protein_name": "Zinc finger protein Pegasus", "gene_name": "IKZF5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAETLQGAGTEGDQNGLDHPSVEVSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVHKPDYLNDFTHEIPNIQTEAYESMTKSSQTSGLPRDPQDLMVDNPLNQLSTLAGQLSSLPPENQNERGCSPDVVTCQDEKPFMMQQPATPAVVSSVSASIAQSSSPTSPDPRPAHNQRNYSPVAGPSSDRSAHTSTPSISNSQPSTPAPTLPVQDPQLLHHCQHCDMYFADNILYTIHMGCHGFENPFQCNICGCKCKNKYDFACHFARGQHSQH", "length": 421 }, "evidence": [ { "id": "F1SED1", "url": "https://omabrowser.org/oma/group/F1SED1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8BU00-1", "protein_name": "Zinc finger protein Pegasus", "gene_name": "Ikzf5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAETLQGAGTDGDQNGLDHPSVEVSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYEAMAKTTPTGGLPRDPQELMVDNPLNQLSTLAGQLSSLPPENQNPASPDVDACPDEKPFMIQQPSAQAVVSAVSASIPQSSSPTSPEPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPSTPAPTLPVQDPQLLHHCQHCDVYFADNVLYTVHMGCHGYDSPFQCNVCGCKCKDKYDFACHFARGQHNQH", "length": 419 }, "evidence": [ { "id": "F1SED1", "url": "https://omabrowser.org/oma/group/F1SED1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H5V7-1", "protein_name": "Zinc finger protein Pegasus", "gene_name": "IKZF5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGEKKPEPLDFVKDFQEYLTQQTHHVNMISGSVSGDKEAEALQGAGTDGDQNGLDHPSVEVSLDENSGMLVDGFERTFDGKLKCRYCNYASKGTARLIEHIRIHTGEKPHRCHLCPFASAYERHLEAHMRSHTGEKPYKCELCSFRCSDRSNLSHHRRRKHKMVPIKGTRSSLSSKKMWGVLQKKTSNLGYSRRALINLSPPSMVVQKPDYLNDFTHEIPNIQTDSYESMAKTTPTGGLPRDPQELMVDNPLNQLSTLAGQLSSLPPENQNPASPDVVPCPDEKPFMIQQPSTQAVVSAVSASIPQSSSPTSPEPRPSHSQRNYSPVAGPSSEPSAHTSTPSIGNSQPSTPAPALPVQDPQLLHHCQHCDMYFADNILYTIHMGCHGYENPFQCNICGCKCKNKYDFACHFARGQHNQH", "length": 419 }, "evidence": [ { "id": "F1SED1", "url": "https://omabrowser.org/oma/group/F1SED1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" }, { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SED1", "url": "https://www.uniprot.org/uniprotkb/F1SED1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SED1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED1" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 82, "end_pos": 109, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 350 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 152, "end_pos": 154 }, { "start_pos": 198, "end_pos": 200 }, { "start_pos": 323, "end_pos": 325 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SED3-1", "uniprot_ac": "F1SED3", "uniprot_id": "F1SED3_PIG", "mass": { "chemical_mass": 45134.0, "monoisotopic_mass": 45134.0 }, "refseq": { "ac": "XP_005662729", "name": "protein ABHD1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662729" }, "gene_names": [ { "name": "ABHD1", "type": "recommended", "evidence": [ { "id": "F1SED3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED3" } ] }, { "name": "ABHD1", "type": "synonym", "evidence": [ { "id": "XP_005662729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662729" } ] } ], "protein_names": [ { "name": "Protein ABHD1", "type": "recommended", "evidence": [ { "id": "F1SED3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED3/entry#names_and_taxonomy" } ] }, { "name": "Alpha/beta hydrolase domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "F1SED3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED3/entry#names_and_taxonomy" } ] }, { "name": "protein ABHD1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005662729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662729" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SED3", "url": "https://www.uniprot.org/uniprotkb/F1SED3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ABHD1", "url": "https://www.uniprot.org/uniprotkb/F1SED3", "locus": { "chromosome": "3", "start_pos": 111996142, "end_pos": 112002132, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008554", "url": "https://www.ensembl.org/id/ENSSSCG00000008554" } ] } } ], "crossref": [ { "id": "F1SED3", "url": "https://alphafold.ebi.ac.uk/entry/F1SED3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008554", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008554", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525041", "url": "https://www.ncbi.nlm.nih.gov/gene/100525041", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525041", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525041", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MMTTSWG", "url": "https://omabrowser.org/oma/group/MMTTSWG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10794", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10794", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10794:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10794:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005662729", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662729", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SED3", "url": "https://www.uniprot.org/uniprotkb/F1SED3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SED3-1", "url": "https://www.uniprot.org/uniprotkb/F1SED3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSSSLNPQNNSWTELFSLLLGLGAVLYLGYYWTWVPQTPRLVTGSQLRAFLEQHCPLTVETFYPTFWCVEGRLQTIFRVFLQSRPVVSYWSEVLQTPDGGQFLLDWAGQHNRSQRPDPSTQPIVLLLPGITGSSQETYILHLVDQALKDGYRAVVFNNRGCRGEELLTYRAYCASNTEDLEAAVNHIKGHYSQAPLLAVGISLGGILVLNYLARTGRAAGVVAGLTVSACWDSFETIRSLESPLNSLLFNQYLTAGLCQVINRNRKVMEKVVNVDSVLQARTIRQFDERYTAVAFGYQDSAAYYRAASPRTKVDAIQIPVLCLNAADDPFSPVHALPLQAAQHSPHVALLVTPRGGHIGFLEGLLPWKHCYMSRLLHQYARAIFQHPEELLSLRVPTLSEGGKS", "length": 405, "header": "tr|F1SED3-1|F1SED3_PIG Isoform 1 of Protein ABHD1 OS=Sus scrofa OX=9823 GN=ABHD1 PE=3 SV=2 CANONICAL=F1SED3-1" }, "isoforms": [ { "isoform_ac": "F1SED3-1", "url": "https://www.uniprot.org/uniprotkb/F1SED3/entry#F1SED3-1", "sequence": { "sequence": "MLSSSLNPQNNSWTELFSLLLGLGAVLYLGYYWTWVPQTPRLVTGSQLRAFLEQHCPLTVETFYPTFWCVEGRLQTIFRVFLQSRPVVSYWSEVLQTPDGGQFLLDWAGQHNRSQRPDPSTQPIVLLLPGITGSSQETYILHLVDQALKDGYRAVVFNNRGCRGEELLTYRAYCASNTEDLEAAVNHIKGHYSQAPLLAVGISLGGILVLNYLARTGRAAGVVAGLTVSACWDSFETIRSLESPLNSLLFNQYLTAGLCQVINRNRKVMEKVVNVDSVLQARTIRQFDERYTAVAFGYQDSAAYYRAASPRTKVDAIQIPVLCLNAADDPFSPVHALPLQAAQHSPHVALLVTPRGGHIGFLEGLLPWKHCYMSRLLHQYARAIFQHPEELLSLRVPTLSEGGKS", "length": 405, "header": "tr|F1SED3-1|F1SED3_PIG Isoform 1 of Protein ABHD1 OS=Sus scrofa OX=9823 GN=ABHD1 PE=3 SV=2 CANONICAL=F1SED3-1" }, "locus": { "chromosome": "3", "start_pos": 112002023, "end_pos": 111996209, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009359.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009359.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009119.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009119.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SED3", "url": "https://www.uniprot.org/uniprotkb/F1SED3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525041", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525041", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HB79-1", "protein_name": "Protein ABHD1", "gene_name": "Abhd1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYPYITKMLSSSLSSQNGTWSDTVSLLLALGVALYLGYYWACVPQRPRLVAGPQFLAFLEQHCPVTVETFYPTLWCFEGRLQTIFRVLLQSQPEVSYRSEVLQTPDGGQFLLDWAEQSKSSHYLDPTTQPIVLLLPGISGSSQEPYILHLVNQALKDGYRAVVFNNRGCRGEELLTHRAYCASNTEDLETAVKHIKCRYSQAPLLAVGISFGGILVLNYLARTGKAGGLVAGLTMSACWDSFETVDSLETPLNSLLFNQPLTAGLCRLVARNRKTIEKVLDVDFAIKARTIRQLDERYTSVAFGYKDCAAYYQASSPRTKVDAIHTPVLCLNAADDPFSPGHAFPLQAAQQSPYVALLITARGGHIGFLEGLLPRKHCYMNRVLHQYAQAIFQHYMELPDLGALTSEDGKS", "length": 412 }, "evidence": [ { "id": "F1SED3", "url": "https://omabrowser.org/oma/group/F1SED3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3T0A0-1", "protein_name": "Protein ABHD1", "gene_name": "ABHD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLSSSQSPQDDTWTESFSLLLGLGAALYLGYYWTWVPQRPQLVTGSRFLAFLEQHCPVTLETFYPTLWCFEGRLQTIFRVLLQSRPVVPYSSEVLETPDGGQILLDWASQSNSQYPDPSTQPTVLLLPGITGSSQETYILHLVDQALKDGYRAVVFNNRGCRGEELLTHRAFCASNTEDLVTVINHIKSRYPQAPLLAVGISLGGILVLNHLARTGRAAGLVAALTLSACWDSFETTRSLETPLNSLLFNHRLTAGLCQVVNRNRKVMDNVVNVDFVLQARTIREFDERYTAVVFGYQDCTAYYQAASPRTKVNAIQIPVLCLNAADDPFSPVDALPLQAAQHSLHVALLVTARGGHIGFLEGLLPWQHCYMSRLLHQYAEAIFQHPAELPGPRSPTPSEAGKS", "length": 404 }, "evidence": [ { "id": "F1SED3", "url": "https://omabrowser.org/oma/group/F1SED3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RK23-1", "protein_name": "Protein ABHD1", "gene_name": "Abhd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEYLHITKMLSSSLSPQNGTWSDAISLLLALGIALYLGYYWACVPQRPRLVAGPQFLAFLEQHCPVTVETFYPTLWCFEGRLQTIFRVLLQSQPVIPYRSEVLQTPDGGQFLLDWAEQPYSSHCPDPTTQPIVLLLPGISGSSQEPYILHLVDQALKDGYRAVVFNNRGCRGEELLTHRAYCASNTEDLETVVKHIKHRYSRAPLLAVGISFGGILVLNYLARTGKAGGLVAGLTMSACWDSFETVDSLETPLNSLLFNQPLTAGLCRLVARNRKSIEKVLDVDFAIKARTIRQLDERYTSVAFGYKDCAAYYHASSPRTKVDAICTPVLCLNAADDPFSPVQALPLQAAQKSPYVALLITARGGHIGFLEGLLPWQHCYMNRVLHQYARAVFQHSVGLPGLGALTPEDGKS", "length": 412 }, "evidence": [ { "id": "F1SED3", "url": "https://omabrowser.org/oma/group/F1SED3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96SE0-1", "protein_name": "Protein ABHD1", "gene_name": "ABHD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLSSFLSPQNGTWADTFSLLLALAVALYLGYYWACVLQRPRLVAGPQFLAFLEPHCSITTETFYPTLWCFEGRLQSIFQVLLQSQPLVLYQSDILQTPDGGQLLLDWAKQPDSSQDPDPTTQPIVLLLPGITGSSQETYVLHLVNQALRDGYQAVVFNNRGCRGEELRTHRAFCASNTEDLETVVNHIKHRYPQAPLLAVGISFGGILVLNHLAQARQAAGLVAALTLSACWDSFETTRSLETPLNSLLFNQPLTAGLCQLVERNRKVIEKVVDIDFVLQARTIRQFDERYTSVAFGYQDCVTYYKAASPRTKIDAIRIPVLYLSAADDPFSPVCALPIQAAQHSPYVALLITARGGHIGFLEGLLPWQHWYMSRLLHQYAKAIFQDPEGLPDLRALLPSEDRNS", "length": 405 }, "evidence": [ { "id": "F1SED3", "url": "https://omabrowser.org/oma/group/F1SED3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SED3", "url": "https://www.uniprot.org/uniprotkb/F1SED3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "monoacylglycerol lipase activity", "id": "GO:0047372", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047372", "evidence": [ { "database": "UniProtKB", "id": "F1SED3", "url": "https://www.uniprot.org/uniprotkb/F1SED3" } ], "pmid": "" }, { "name": "acetylesterase activity", "id": "GO:0008126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008126", "evidence": [ { "database": "UniProtKB", "id": "F1SED3", "url": "https://www.uniprot.org/uniprotkb/F1SED3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "medium-chain fatty acid catabolic process", "id": "GO:0051793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051793", "evidence": [ { "database": "UniProtKB", "id": "F1SED3", "url": "https://www.uniprot.org/uniprotkb/F1SED3" } ], "pmid": "" }, { "name": "medium-chain fatty acid biosynthetic process", "id": "GO:0051792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051792", "evidence": [ { "database": "UniProtKB", "id": "F1SED3", "url": "https://www.uniprot.org/uniprotkb/F1SED3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" }, { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SED3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 405, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SED3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SED3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SED3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED3" }, { "id": "PF00561", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00561" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AB hydrolase-1", "eco_id": "ECO_0000259", "start_pos": 123, "end_pos": 364, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 }, { "start_pos": 112, "end_pos": 114 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SED6-1", "uniprot_ac": "F1SED6", "uniprot_id": "F1SED6_PIG", "mass": { "chemical_mass": 22842.0, "monoisotopic_mass": 22842.0 }, "refseq": { "ac": "XP_003125343", "name": "transcription factor 23", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125343" }, "gene_names": [ { "name": "TCF23", "type": "recommended", "evidence": [ { "id": "F1SED6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ] }, { "name": "TCF23", "type": "synonym", "evidence": [ { "id": "XP_003125343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125343" } ] } ], "protein_names": [ { "name": "Transcription factor 23", "type": "synonym", "evidence": [ { "id": "F1SED6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED6/entry#names_and_taxonomy" } ] }, { "name": "transcription factor 23", "type": "synonym", "evidence": [ { "id": "XP_003125343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125343" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TCF23", "url": "https://www.uniprot.org/uniprotkb/F1SED6", "locus": { "chromosome": "3", "start_pos": 111976845, "end_pos": 111983790, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027409", "url": "https://www.ensembl.org/id/ENSSSCG00000027409" } ] } } ], "crossref": [ { "id": "ENSSSCG00000027409", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027409", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19709", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19709", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522370", "url": "https://www.ncbi.nlm.nih.gov/gene/100522370", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522370", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522370", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RTRQDLW", "url": "https://omabrowser.org/oma/group/RTRQDLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SED6", "url": "https://www.orthodb.org/?gene=F1SED6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23349", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23349:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125343", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125343", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SED6-1", "url": "https://www.uniprot.org/uniprotkb/F1SED6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQREAGGALAMPGVGQSPAKATPRLLAGTDRKRSRLSRTGQDLWEDTSWSGQRWSGAAPSSRGARARSLARGRSEASPENAARERSRVRTLRQAFLALQATLPAVPPDTKLSKLDVLVLATSYIAHLTRTLGHEMPGPAWPPFLRGLRYLHPLKKWPMRSRLYAGGLGCSGLDSTTAATSGQRTKEAEAGPQGSGEADALLPTRPLSPALGDK", "length": 214, "header": "tr|F1SED6-1|F1SED6_PIG Isoform 1 of Transcription factor 23 OS=Sus scrofa OX=9823 GN=TCF23 PE=4 SV=1 CANONICAL=F1SED6-1" }, "isoforms": [ { "isoform_ac": "F1SED6-1", "url": "https://www.uniprot.org/uniprotkb/F1SED6/entry#F1SED6-1", "sequence": { "sequence": "MSQREAGGALAMPGVGQSPAKATPRLLAGTDRKRSRLSRTGQDLWEDTSWSGQRWSGAAPSSRGARARSLARGRSEASPENAARERSRVRTLRQAFLALQATLPAVPPDTKLSKLDVLVLATSYIAHLTRTLGHEMPGPAWPPFLRGLRYLHPLKKWPMRSRLYAGGLGCSGLDSTTAATSGQRTKEAEAGPQGSGEADALLPTRPLSPALGDK", "length": 214, "header": "tr|F1SED6-1|F1SED6_PIG Isoform 1 of Transcription factor 23 OS=Sus scrofa OX=9823 GN=TCF23 PE=4 SV=1 CANONICAL=F1SED6-1" }, "locus": { "chromosome": "3", "start_pos": 111983653, "end_pos": 111980550, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029034.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029034.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023992.1", "url": "https://www.ensembl.org/id/ENSSSCP00000023992.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522370", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522370", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MU43-1", "protein_name": "Transcription factor 23", "gene_name": "Tcf23", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQQATGVPVMPRAGHGQTKAKALLGTDRKRIRLSRTRQDLWDDTSWSNHRSSRATSAPRGTRAKGTAHGRSEASPENAARERTRVRTLRQAFLALQAALPAVPPDTKLSKLDVLVLATSYIAHLTRTLGHELPGPAWPPFLRGLRYLHPLKKWPMRSRLYAGGLGCSSLDSTPATAASQRTRDEEVGAQVSVATDILLLSDPVSPSPGNK", "length": 211 }, "evidence": [ { "id": "F1SED6", "url": "https://omabrowser.org/oma/group/F1SED6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9TAK9-1", "protein_name": "Transcription factor 23", "gene_name": "TCF23", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSQREARGARAMPGLGQSPAKATPRLLAGTERKRSRLSRRGQDLWEESSWSNQRWSRTAPNPRGARARSLARGRSEASPENAARERSRVRTLRQAFLALQATLPAVPPDTKLSKLDVLVLATSYIAHLTRTLGQEMPGPSWPPFLRGLRYLHPLKKWPMRSRLYAGGLGCSGLDSTTASNSGQRTKEAEAGPHVSGEPDALLSTRPLSPAPSDK", "length": 214 }, "evidence": [ { "id": "F1SED6", "url": "https://omabrowser.org/oma/group/F1SED6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7RTU1-1", "protein_name": "Transcription factor 23", "gene_name": "TCF23", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSQRKARGPPAMPGVGHSQTQAKARLLPGADRKRSRLSRTRQDPWEERSWSNQRWSRATPGPRGTRAGGLALGRSEASPENAARERSRVRTLRQAFLALQAALPAVPPDTKLSKLDVLVLAASYIAHLTRTLGHELPGPAWPPFLRGLRYLHPLKKWPMRSRLYAGGLGYSDLDSTTASTPSQRTRDAEVGSQVPGEADALLSTTPLSPALGDK", "length": 214 }, "evidence": [ { "id": "F1SED6", "url": "https://omabrowser.org/oma/group/F1SED6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JLR5-1", "protein_name": "Transcription factor 23", "gene_name": "Tcf23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSQEATEAPAMPGEGHGHNKAKARWLLGTDRKRSRINRTRQDLWEDTSWSNHRLSRATSAPRGTRARGTAHGRSEASPENAARERTRVKTLRQAFLALQAALPAVPPDTKLSKLDVLVLATSYIAHLTRTLGHELPGPAWPPFVRGLRYLHPLKKWPMRSRLYAGGLGCSDLDSTTAITTGQRCKDAELGSQDSVAAESLLTSPAFGNK", "length": 209 }, "evidence": [ { "id": "F1SED6", "url": "https://omabrowser.org/oma/group/F1SED6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" }, { "name": "developmental process", "id": "GO:0032502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032502", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" }, { "name": "negative regulation of muscle cell differentiation", "id": "GO:0051148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051148", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" }, { "name": "euchromatin", "id": "GO:0000791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000791", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" }, { "name": "transcription regulator inhibitor activity", "id": "GO:0140416", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140416", "evidence": [ { "database": "UniProtKB", "id": "F1SED6", "url": "https://www.uniprot.org/uniprotkb/F1SED6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SED6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SED6" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 128, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEH7-1", "uniprot_ac": "F1SEH7", "uniprot_id": "F1SEH7_PIG", "mass": { "chemical_mass": 43675.0, "monoisotopic_mass": 43675.0 }, "refseq": {}, "gene_names": [ { "name": "NSMCE4A", "type": "recommended", "evidence": [ { "id": "F1SEH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" } ] } ], "protein_names": [ { "name": "Non-structural maintenance of chromosomes element 4", "type": "recommended", "evidence": [ { "id": "F1SEH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEH7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the SMC5-SMC6 complex, that promotes sister chromatid alignment after DNA damage and facilitates double-stranded DNA breaks (DSBs) repair via homologous recombination between sister chromatids.", "evidence": [ { "database": "UniProtKB", "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7#function" }, { "database": "UniProtKB", "id": "RU365071", "url": "https://www.uniprot.org/uniprotkb/RU365071#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NSMCE4A", "url": "https://www.uniprot.org/uniprotkb/F1SEH7", "locus": { "chromosome": "14", "start_pos": 131594130, "end_pos": 131609204, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010700", "url": "https://www.ensembl.org/id/ENSSSCG00000010700" } ] } } ], "crossref": [ { "id": "F1SEH7", "url": "https://alphafold.ebi.ac.uk/entry/F1SEH7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010700", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010700", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR014854", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014854", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16140:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16140:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08743", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08743", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3108214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3108214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEH7-1", "url": "https://www.uniprot.org/uniprotkb/F1SEH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGDSSGRRSEGRGRGRDPHRDRTRSRSRSPLSPVSRRGAAPERREAPERPSLEETEPSDSGDELMDPASLEAETDHGLCRQIRHQYRALINSVQQNREDILNASDKLTQVLEEANTLFNGVSRAREAVLDAHFLVLASDLGKEKAKQLRSDLNSFDMLRYVETLLTHMGVNPLEAEELVRDEDSSDFEFIVYDSWKISGKTAENTFNKTHTFHFLLGSIQGEGPVPKPRIDRPKKARMIEEKQAMPAELKRMEQSHQEATEKEVERILGLLQTYFQEDPDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIRLDQDRLPVIEPVNINESDGIDQNTQIRNQAVIALSYREWEEIVKTFEISEAVITSGQSRRLSAW", "length": 382, "header": "tr|F1SEH7-1|F1SEH7_PIG Isoform 1 of Non-structural maintenance of chromosomes element 4 OS=Sus scrofa OX=9823 GN=NSMCE4A PE=3 SV=2 CANONICAL=F1SEH7-1" }, "isoforms": [ { "isoform_ac": "F1SEH7-1", "url": "https://www.uniprot.org/uniprotkb/F1SEH7/entry#F1SEH7-1", "sequence": { "sequence": "MSGDSSGRRSEGRGRGRDPHRDRTRSRSRSPLSPVSRRGAAPERREAPERPSLEETEPSDSGDELMDPASLEAETDHGLCRQIRHQYRALINSVQQNREDILNASDKLTQVLEEANTLFNGVSRAREAVLDAHFLVLASDLGKEKAKQLRSDLNSFDMLRYVETLLTHMGVNPLEAEELVRDEDSSDFEFIVYDSWKISGKTAENTFNKTHTFHFLLGSIQGEGPVPKPRIDRPKKARMIEEKQAMPAELKRMEQSHQEATEKEVERILGLLQTYFQEDPDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIRLDQDRLPVIEPVNINESDGIDQNTQIRNQAVIALSYREWEEIVKTFEISEAVITSGQSRRLSAW", "length": 382, "header": "tr|F1SEH7-1|F1SEH7_PIG Isoform 1 of Non-structural maintenance of chromosomes element 4 OS=Sus scrofa OX=9823 GN=NSMCE4A PE=3 SV=2 CANONICAL=F1SEH7-1" }, "locus": { "chromosome": "14", "start_pos": 131609101, "end_pos": 131594130, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011706.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011706.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011404.3", "url": "https://www.ensembl.org/id/ENSSSCP00000011404.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3108214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3108214", "resource": "Reactome", "description": "SUMOylation of DNA damage response and repair proteins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" } ], "pmid": "" }, { "name": "chromosome, telomeric region", "id": "GO:0000781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000781", "evidence": [ { "database": "UniProtKB", "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" } ], "pmid": "" }, { "name": "Smc5-Smc6 complex", "id": "GO:0030915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030915", "evidence": [ { "database": "UniProtKB", "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" } ], "pmid": "" }, { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "F1SEH7", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEH7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 382, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEH7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEH7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" }, { "id": "PF08743", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08743" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Non-structural maintenance of chromosome element 4 C-terminal", "eco_id": "ECO_0000259", "start_pos": 283, "end_pos": 371, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SEH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEH7" }, { "id": "PF15412", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15412" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nse4/EID protein Nse3/MAGE-binding", "eco_id": "ECO_0000259", "start_pos": 131, "end_pos": 184, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 208, "end_pos": 210 }, { "start_pos": 333, "end_pos": 335 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEK2-1", "uniprot_ac": "F1SEK2", "uniprot_id": "F1SEK2_PIG", "mass": { "chemical_mass": 120843.0, "monoisotopic_mass": 120843.0 }, "refseq": {}, "gene_names": [ { "name": "TTI1", "type": "recommended", "evidence": [ { "id": "F1SEK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ] } ], "protein_names": [ { "name": "TELO2-interacting protein 1 homolog", "type": "recommended", "evidence": [ { "id": "F1SEK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEK2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Regulator of the DNA damage response (DDR). Part of the TTT complex that is required to stabilize protein levels of the phosphatidylinositol 3-kinase-related protein kinase (PIKK) family proteins. The TTT complex is involved in the cellular resistance to DNA damage stresses, like ionizing radiation (IR), ultraviolet (UV) and mitomycin C (MMC). Together with the TTT complex and HSP90 may participate in the proper folding of newly synthesized PIKKs. Promotes assembly, stabilizes and maintains the activity of mTORC1 and mTORC2 complexes, which regulate cell growth and survival in response to nutrient and hormonal signals.", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2#function" }, { "database": "UniProtKB", "id": "ARBA00056900", "url": "https://www.uniprot.org/uniprotkb/ARBA00056900#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTI1", "url": "https://www.uniprot.org/uniprotkb/F1SEK2", "locus": { "chromosome": "17", "start_pos": 41047411, "end_pos": 41078506, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007340", "url": "https://www.ensembl.org/id/ENSSSCG00000007340" } ] } } ], "crossref": [ { "id": "F1SEK2", "url": "https://alphafold.ebi.ac.uk/entry/F1SEK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007340", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007340", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057567", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057567", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18460", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18460", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18460:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18460:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21547", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21547", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24173", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24173", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24176", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24176", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVFDTPEEAFGVLRPVCVQLTKAQTVENVAHLQAQLQAVSDSALQELQQYILFPLRFTLKTPGPKRERLIQSVVECITFVLSSTCVKEQELLQELFSELSACLYSPSSQKPAAVSEELKLAVIQGLSTLMHAAYGDIILSFYEPSVLPRLGFAVSLLLGLAEQEKSRQIKMAALKCLQVLLFQCDCQGHPRSWDELEQKQLGDLFASFLPGIATALTRIITGDFKQGHSIVMSSLKIFYETVSFIMADEQLTRVSEVQAKPAAEHRVAELMVHREASWVKNTGDKLTVLIKKITECVSVHPHWKVRLELIDLVEALLLKCSQSLVESAGPLLKALVSLLNDESPDVQAQCSKVLRRFADAKVVVGSRAFADILSENLHSLATSLPRLMNSQDDQGRVSTLSLLLGYLKLLGPKVNFVLNSVAHLQRLSKALIQVLELDVADIKIVEERRWNPEHLHASPETPAAGQWTPIQRRYFRFFTDERVFLLLRQVCQLLGYGDLYLLVDHFMELYRESVAYRKQAAMILNELVAGAAGLGVENLHEKHIKTSPEELREIVTSILEEYTSQENWYLVTCMEAEEVGEELMVKQSGLQALTSGAHTCQATSSPAFSKPGPTICSMNSNIWQICIQLEGIGHFAHALGKDFRLLLMSALYPVLEKAGDQTLLISQAATSAMMDICHACDYDSLQHLINQNSDYLVNGISLNLRHLSLHPHTPKVLEVMLQNSDASLLPLVADVVQDVLATLDQFYDKRATSFVSVLHALLAALAQWFPDAGDLREQSLGEEGSHLSQRPARLENGLNVTTAEGIEQFVLNYLKEKDVAEGNVSDFDNEEEEQSDPPEVDENDLGPHVEPPLPVQIQIATDVMERCIHLMSDKNLKIRLKVLDVLDLCVVVLQSHKNQLLPLAHRAWPSLVHRLTNDDPLAVLRAFKVLQTLGGKCGDFLRSRFCKDVLPRLTGSLVSQAPVSARAGPVYSHTLAFKLQLAVLQGLGPLCERLDLGEGDLNKVADACLIYLSAKQPVKLQEAARSVFLHLMKVDPDSTWFLLNELYCPEEFTPPHPSLHPVQLRGSTSPQNPYTANVLLLLQQLP", "length": 1087, "header": "tr|F1SEK2-1|F1SEK2_PIG Isoform 1 of TELO2-interacting protein 1 homolog OS=Sus scrofa OX=9823 GN=TTI1 PE=3 SV=3 CANONICAL=F1SEK2-1" }, "isoforms": [ { "isoform_ac": "F1SEK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEK2/entry#F1SEK2-1", "sequence": { "sequence": "MAVFDTPEEAFGVLRPVCVQLTKAQTVENVAHLQAQLQAVSDSALQELQQYILFPLRFTLKTPGPKRERLIQSVVECITFVLSSTCVKEQELLQELFSELSACLYSPSSQKPAAVSEELKLAVIQGLSTLMHAAYGDIILSFYEPSVLPRLGFAVSLLLGLAEQEKSRQIKMAALKCLQVLLFQCDCQGHPRSWDELEQKQLGDLFASFLPGIATALTRIITGDFKQGHSIVMSSLKIFYETVSFIMADEQLTRVSEVQAKPAAEHRVAELMVHREASWVKNTGDKLTVLIKKITECVSVHPHWKVRLELIDLVEALLLKCSQSLVESAGPLLKALVSLLNDESPDVQAQCSKVLRRFADAKVVVGSRAFADILSENLHSLATSLPRLMNSQDDQGRVSTLSLLLGYLKLLGPKVNFVLNSVAHLQRLSKALIQVLELDVADIKIVEERRWNPEHLHASPETPAAGQWTPIQRRYFRFFTDERVFLLLRQVCQLLGYGDLYLLVDHFMELYRESVAYRKQAAMILNELVAGAAGLGVENLHEKHIKTSPEELREIVTSILEEYTSQENWYLVTCMEAEEVGEELMVKQSGLQALTSGAHTCQATSSPAFSKPGPTICSMNSNIWQICIQLEGIGHFAHALGKDFRLLLMSALYPVLEKAGDQTLLISQAATSAMMDICHACDYDSLQHLINQNSDYLVNGISLNLRHLSLHPHTPKVLEVMLQNSDASLLPLVADVVQDVLATLDQFYDKRATSFVSVLHALLAALAQWFPDAGDLREQSLGEEGSHLSQRPARLENGLNVTTAEGIEQFVLNYLKEKDVAEGNVSDFDNEEEEQSDPPEVDENDLGPHVEPPLPVQIQIATDVMERCIHLMSDKNLKIRLKVLDVLDLCVVVLQSHKNQLLPLAHRAWPSLVHRLTNDDPLAVLRAFKVLQTLGGKCGDFLRSRFCKDVLPRLTGSLVSQAPVSARAGPVYSHTLAFKLQLAVLQGLGPLCERLDLGEGDLNKVADACLIYLSAKQPVKLQEAARSVFLHLMKVDPDSTWFLLNELYCPEEFTPPHPSLHPVQLRGSTSPQNPYTANVLLLLQQLP", "length": 1087, "header": "tr|F1SEK2-1|F1SEK2_PIG Isoform 1 of TELO2-interacting protein 1 homolog OS=Sus scrofa OX=9823 GN=TTI1 PE=3 SV=3 CANONICAL=F1SEK2-1" }, "locus": { "chromosome": "17", "start_pos": 41078506, "end_pos": 41048967, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008032.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008032.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007818.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007818.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 615, "start_aa": "Thr", "end_pos": 615, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr615", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "pmid": "" }, { "name": "TORC1 complex", "id": "GO:0031931", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031931", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "pmid": "" }, { "name": "TORC2 complex", "id": "GO:0031932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031932", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "pmid": "" }, { "name": "TTT Hsp90 cochaperone complex", "id": "GO:0110078", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0110078", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "kinase binding", "id": "GO:0019900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019900", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "pmid": "" }, { "name": "protein-containing complex stabilizing activity", "id": "GO:0140777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140777", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of TOR signaling", "id": "GO:0032006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032006", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "pmid": "" }, { "name": "positive regulation of DNA damage checkpoint", "id": "GO:2000003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000003", "evidence": [ { "database": "UniProtKB", "id": "F1SEK2", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 800, "end_pos": 802, "annotation": "n_glycosylation_sequon" }, { "start_pos": 824, "end_pos": 826, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEK2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1087, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEK2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEK2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" }, { "id": "PF24181", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TTI1 C-terminal TPR", "eco_id": "ECO_0000259", "start_pos": 758, "end_pos": 1041, "start_aa": "Val", "end_aa": "Trp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SEK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEK2" }, { "id": "PF24173", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24173" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TTI1 N-terminal TPR", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 343, "start_aa": "Phe", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 615 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 800, "end_pos": 802 }, { "start_pos": 824, "end_pos": 826 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEL2-1", "uniprot_ac": "F1SEL2", "uniprot_id": "F1SEL2_PIG", "mass": { "chemical_mass": 129957.0, "monoisotopic_mass": 129957.0 }, "refseq": {}, "gene_names": [ { "name": "FRMPD2", "type": "recommended", "evidence": [ { "id": "F1SEL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ] } ], "protein_names": [ { "name": "FERM and PDZ domain containing 2", "type": "synonym", "evidence": [ { "id": "F1SEL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FRMPD2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2", "locus": { "chromosome": "14", "start_pos": 88864884, "end_pos": 88966188, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010379", "url": "https://www.ensembl.org/id/ENSSSCG00000010379" } ] } } ], "crossref": [ { "id": "F1SEL2", "url": "https://alphafold.ebi.ac.uk/entry/F1SEL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010379", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010379", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06695", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06695", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06792", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06792", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011019", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011019", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46900:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46900:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09379", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09379", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09380", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09380", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAASVTLASALQVRGEALSEEEIWSLLSLAAERLLEDLRVDSSDYVVCPWSALLSAAGSLSFQDHISHIEATPFKAPELLQGQSDDERPDASQMHVYSLGMTLYWSAGFHVPPNQPLQLREPLHSILLTMCEDQSSRRLPLQSVLEACRIHWEEVAVDSASASLHVRQLVGLVLGTISEVERRAVEESSSGQQDRSYLLRNRLHQASCETRAVRDLGCLHPCRVSGRSTETQSSLEPGLGTSAQSHSSLSVNSALPVEVPPGLQEGRRLSSGSAVQENSRPATPSQRGFLQRKGKFSRPEFALLAGEAPVTLHLPGSIVTKKGKSYLALRDLCVVLLSGQCLEVKCDITSTAGAIFNAVASFANLRELTYFGLAYMKDREFFFLDAETRLCKIAPEDWSEQPQKNSSLNTFKLFLRIKFFVSHYALLQHSWTRHQFYLQLRKDILEEKLYCSDEMLLQLGVFALQAEFGSYPEEQVESKAYFHVEDYIPASLIERMTALRVQVEVSEMHRLSPVLWGEDAELEFLRVTQQLPEYGVLVYHVLPEKTKPEEEMALGICAKGVIVYEVRNNSRVATLRFPWREIEKILAYRKKFMITSSITGKKHTFVTDSAKTCKYLLGLCCAQHGFNAQMSSPGVTTNYDKYVQMANVSLAHLAQSKPLTWVQRLSCSENALFVPGLEDAAGSLGHTSLENFSTDTSKGPGVQGLRGSPCLGREQLERLCLIQKPTTCDALSGLPVQSMRMGPQNNRRRSFTAEPDREIMHVALTRDPYRGFGFVINEGEDVGRASPGIFISSIIPGGPAEKTKKIKPGGQILALNLISLEGFTFDMAVRMIQNSPDNIELIISQPKDICGNTSSEEKNSTANSGVFSTDSLSTGHRGSFSSHTRDQERNTEELEMAQTPSLMPRLRPPLSTPPLKGAGSSCLPSHSETNASEIYFVELVKEDGTLGFSVTGGINTSVLCGGIYVKSIVPGGPAAKEGRILQGDRLLQVDGVSLCGLTHKQAVQCLKGSGQVARLVLERRGLRTAQQCPSANDRMEDERTAVSVATVLPGRPVSSVSATDGPKFEVKLKKNAGGLGFSFVQMESESGSHLKNDLVRIKRLFPGQPAEENGAIAAGDIILAVNGRPTEGLDFQEVLHLLRGASQEVTLLLCRPPPGALPEMDQGWQVRDGTLCPLHVPHSQAPLF", "length": 1185, "header": "tr|F1SEL2-1|F1SEL2_PIG Isoform 1 of FERM and PDZ domain containing 2 OS=Sus scrofa OX=9823 GN=FRMPD2 PE=4 SV=4 CANONICAL=F1SEL2-1" }, "isoforms": [ { "isoform_ac": "F1SEL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEL2/entry#F1SEL2-1", "sequence": { "sequence": "MSAASVTLASALQVRGEALSEEEIWSLLSLAAERLLEDLRVDSSDYVVCPWSALLSAAGSLSFQDHISHIEATPFKAPELLQGQSDDERPDASQMHVYSLGMTLYWSAGFHVPPNQPLQLREPLHSILLTMCEDQSSRRLPLQSVLEACRIHWEEVAVDSASASLHVRQLVGLVLGTISEVERRAVEESSSGQQDRSYLLRNRLHQASCETRAVRDLGCLHPCRVSGRSTETQSSLEPGLGTSAQSHSSLSVNSALPVEVPPGLQEGRRLSSGSAVQENSRPATPSQRGFLQRKGKFSRPEFALLAGEAPVTLHLPGSIVTKKGKSYLALRDLCVVLLSGQCLEVKCDITSTAGAIFNAVASFANLRELTYFGLAYMKDREFFFLDAETRLCKIAPEDWSEQPQKNSSLNTFKLFLRIKFFVSHYALLQHSWTRHQFYLQLRKDILEEKLYCSDEMLLQLGVFALQAEFGSYPEEQVESKAYFHVEDYIPASLIERMTALRVQVEVSEMHRLSPVLWGEDAELEFLRVTQQLPEYGVLVYHVLPEKTKPEEEMALGICAKGVIVYEVRNNSRVATLRFPWREIEKILAYRKKFMITSSITGKKHTFVTDSAKTCKYLLGLCCAQHGFNAQMSSPGVTTNYDKYVQMANVSLAHLAQSKPLTWVQRLSCSENALFVPGLEDAAGSLGHTSLENFSTDTSKGPGVQGLRGSPCLGREQLERLCLIQKPTTCDALSGLPVQSMRMGPQNNRRRSFTAEPDREIMHVALTRDPYRGFGFVINEGEDVGRASPGIFISSIIPGGPAEKTKKIKPGGQILALNLISLEGFTFDMAVRMIQNSPDNIELIISQPKDICGNTSSEEKNSTANSGVFSTDSLSTGHRGSFSSHTRDQERNTEELEMAQTPSLMPRLRPPLSTPPLKGAGSSCLPSHSETNASEIYFVELVKEDGTLGFSVTGGINTSVLCGGIYVKSIVPGGPAAKEGRILQGDRLLQVDGVSLCGLTHKQAVQCLKGSGQVARLVLERRGLRTAQQCPSANDRMEDERTAVSVATVLPGRPVSSVSATDGPKFEVKLKKNAGGLGFSFVQMESESGSHLKNDLVRIKRLFPGQPAEENGAIAAGDIILAVNGRPTEGLDFQEVLHLLRGASQEVTLLLCRPPPGALPEMDQGWQVRDGTLCPLHVPHSQAPLF", "length": 1185, "header": "tr|F1SEL2-1|F1SEL2_PIG Isoform 1 of FERM and PDZ domain containing 2 OS=Sus scrofa OX=9823 GN=FRMPD2 PE=4 SV=4 CANONICAL=F1SEL2-1" }, "locus": { "chromosome": "14", "start_pos": 88939354, "end_pos": 88866006, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011361.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011361.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011067.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011067.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 284, "start_aa": "Thr", "end_pos": 284, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr284", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 913, "start_aa": "Thr", "end_pos": 913, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr913", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ], "pmid": "" }, { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ], "pmid": "" }, { "name": "apical part of cell", "id": "GO:0045177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045177", "evidence": [ { "database": "UniProtKB", "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "1-phosphatidylinositol binding", "id": "GO:0005545", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005545", "evidence": [ { "database": "UniProtKB", "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "bicellular tight junction assembly", "id": "GO:0070830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070830", "evidence": [ { "database": "UniProtKB", "id": "F1SEL2", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 569, "end_pos": 571, "annotation": "n_glycosylation_sequon" }, { "start_pos": 648, "end_pos": 650, "annotation": "n_glycosylation_sequon" }, { "start_pos": 692, "end_pos": 694, "annotation": "n_glycosylation_sequon" }, { "start_pos": 853, "end_pos": 855, "annotation": "n_glycosylation_sequon" }, { "start_pos": 860, "end_pos": 862, "annotation": "n_glycosylation_sequon" }, { "start_pos": 931, "end_pos": 933, "annotation": "n_glycosylation_sequon" }, { "start_pos": 956, "end_pos": 958, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEL2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1185, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEL2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEL2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" }, { "id": "PS50057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FERM", "eco_id": "ECO_0000259", "start_pos": 331, "end_pos": 632, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SEL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" }, { "id": "PS51377", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51377" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KIND", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 188, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SEL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEL2" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 762, "end_pos": 848, "start_aa": "His", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 284, 913 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 406, "end_pos": 408 }, { "start_pos": 569, "end_pos": 571 }, { "start_pos": 648, "end_pos": 650 }, { "start_pos": 692, "end_pos": 694 }, { "start_pos": 853, "end_pos": 855 }, { "start_pos": 860, "end_pos": 862 }, { "start_pos": 931, "end_pos": 933 }, { "start_pos": 956, "end_pos": 958 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEQ3-1", "uniprot_ac": "F1SEQ3", "uniprot_id": "F1SEQ3_PIG", "mass": { "chemical_mass": 37077.0, "monoisotopic_mass": 37077.0 }, "refseq": { "ac": "NP_001231311", "name": "growth hormone-inducible transmembrane protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231311" }, "gene_names": [ { "name": "GHITM", "type": "recommended", "evidence": [ { "id": "F1SEQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ] }, { "name": "GHITM", "type": "synonym", "evidence": [ { "id": "NP_001231311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231311" } ] } ], "protein_names": [ { "name": "Growth hormone inducible transmembrane protein", "type": "synonym", "evidence": [ { "id": "F1SEQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3/entry#names_and_taxonomy" } ] }, { "name": "growth hormone-inducible transmembrane protein", "type": "synonym", "evidence": [ { "id": "NP_001231311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231311" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GHITM", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3", "locus": { "chromosome": "14", "start_pos": 85401670, "end_pos": 85385868, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010345", "url": "https://www.ensembl.org/id/ENSSSCG00000010345" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010345", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010345", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10431", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10431", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156458", "url": "https://www.ncbi.nlm.nih.gov/gene/100156458", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156458", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156458", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TLMWSER", "url": "https://omabrowser.org/oma/group/TLMWSER/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SEQ3", "url": "https://www.orthodb.org/?gene=F1SEQ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23291", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23291", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23291:SF112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23291:SF112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01027", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01027", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231311", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231311", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEQ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQELKEAALEPSVEKIFKIDQMGRWFIAGGAAVGLGALCYYGLGMSNEIGAIEKAIIWPQYVKDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSISYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGLVLFSMFLLYDTQKVIKRAEVVPMYGVQKYDPINSMLGIYMDTLNIFMRVASILATGGNRKK", "length": 345, "header": "tr|F1SEQ3-1|F1SEQ3_PIG Isoform 1 of Growth hormone inducible transmembrane protein OS=Sus scrofa OX=9823 GN=GHITM PE=1 SV=1 CANONICAL=F1SEQ3-1" }, "isoforms": [ { "isoform_ac": "F1SEQ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3/entry#F1SEQ3-1", "sequence": { "sequence": "MLAARLVCLRTLPSRVFHPTFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGKTGQELKEAALEPSVEKIFKIDQMGRWFIAGGAAVGLGALCYYGLGMSNEIGAIEKAIIWPQYVKDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAGMLVQSISYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAIYGGLVLFSMFLLYDTQKVIKRAEVVPMYGVQKYDPINSMLGIYMDTLNIFMRVASILATGGNRKK", "length": 345, "header": "tr|F1SEQ3-1|F1SEQ3_PIG Isoform 1 of Growth hormone inducible transmembrane protein OS=Sus scrofa OX=9823 GN=GHITM PE=1 SV=1 CANONICAL=F1SEQ3-1" }, "locus": { "chromosome": "14", "start_pos": 85400390, "end_pos": 85387109, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062745.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062745.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048521.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048521.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156458", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156458", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HLR4-1", "protein_name": "Growth hormone-inducible transmembrane protein", "gene_name": "Ghitm", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLAARLLCLRTLPSRVFQPTFTKASPLVKNSITKNQWLLTPSREYTTKTRVRIHRGKTGQGLKEAAFEPSVEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVRDRIHSTYMYLSGSIGLTALSALALARTPAVMNFMMKGSWMTIGATFAAMIGAGVLVQSIPYHRSPVPKHLAWMLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSAVAMCAPSEKFLNMGAPLGVGLGLVFVSSVGSMFLPPTTVAGATLYSVAVYGGLVLFSMFLLHDTQQVIKRAEITPMYGVQKYDPINAMLRIYMDTLNIFMRVATMLATGSNRKK", "length": 345 }, "evidence": [ { "id": "F1SEQ3", "url": "https://omabrowser.org/oma/group/F1SEQ3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5XIA8-1", "protein_name": "Growth hormone-inducible transmembrane protein", "gene_name": "Ghitm", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLAARLVCLRTLPSRVFQPTFITKASPLVKNSITKNQWLLTPSREYATKTRIRTHRGKTGQELKEAALEPSLEKVFKIDQMGKWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSALALARSPALMNFMMTGSWMTIGATFAAMIGAGMLVQSISYEQSPGPKHLAWMLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFASSLGSMFLPPTSVAGATLYSVAMYGGLVLFSMFLLYDTQKVVKRAEITPAYGAQKYDPINSMLTIYMDTLNIFMRVATMLATGSNRKK", "length": 346 }, "evidence": [ { "id": "F1SEQ3", "url": "https://omabrowser.org/oma/group/F1SEQ3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91VC9-1", "protein_name": "Growth hormone-inducible transmembrane protein", "gene_name": "Ghitm", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLAARLVCLRTLPSRVFQPTFITKASPLVKNSITKNQWLVTPSREYATKTRIRTHRGKTGQELKEAALEPSMEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGMSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSALAVARTPALMNFMMTGSWVTIGATFAAMIGAGMLVHSISYEQSPGPKHLAWMLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFASSLGSMFLPPTSVAGATLYSVAMYGGLVLFSMFLLYDTQKVIKRAEITPMYGAQKYDPINSMLTIYMDTLNIFMRVATMLATGSNRKK", "length": 346 }, "evidence": [ { "id": "F1SEQ3", "url": "https://omabrowser.org/oma/group/F1SEQ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H3K2-1", "protein_name": "Growth hormone-inducible transmembrane protein", "gene_name": "GHITM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLAARLVCLRTLPSRVFHPAFTKASPVVKNSITKNQWLLTPSREYATKTRIGIRRGRTGQELKEAALEPSMEKIFKIDQMGRWFVAGGAAVGLGALCYYGLGLSNEIGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSAIAISRTPVLMNFMMRGSWVTIGVTFAAMVGAGMLVRSIPYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVAMYGGLVLFSMFLLYDTQKVIKRAEVSPMYGVQKYDPINSMLSIYMDTLNIFMRVATMLATGGNRKK", "length": 345 }, "evidence": [ { "id": "F1SEQ3", "url": "https://omabrowser.org/oma/group/F1SEQ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VIB2-1", "protein_name": "Mitochondrial morphology and cristae structure 1", "gene_name": "Mics1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLLARLNHVLSGRPMRLLGQSGCPRLWSSAHAQMNSNSLRTPSLAQGKSVIPKRNMQELGMRKYSRESRDRDRSQLESRTRGPSLKERMMGPPSENAYSMGKGAAAGAALMGLVGLCYYGLGLANQPSIYDHSMVWPQYVRDRIHATYAYFGASCGVTAASAVAFFQSDAMMALMTRSGWVASLVTLGLVMLSGSIAQGLEYQPGFGAKQLAWLVHCAVLGAVLAPMCLLGGPILTKALLYTSGIVGALSTVAACAPSEKFLHMGGPLAIGLGVVFASSLASMWLPPTTAVGAGLASMSLYGGLILFSGFLLYDTQRIVKSAELYPQYSKFPYDPINHALAIYMDALNIFIRIAIILAGDQKRKN", "length": 365 }, "evidence": [ { "id": "F1SEQ3", "url": "https://omabrowser.org/oma/group/F1SEQ3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium channel activity", "id": "GO:0005262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005262", "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "pmid": "" }, { "name": "calcium:proton antiporter activity", "id": "GO:0015369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015369", "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of release of cytochrome c from mitochondria", "id": "GO:0090201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090201", "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "pmid": "" }, { "name": "calcium export from the mitochondrion", "id": "GO:0099093", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099093", "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "pmid": "" }, { "name": "inner mitochondrial membrane organization", "id": "GO:0007007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007007", "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "pmid": "" }, { "name": "mitochondrial potassium ion transmembrane transport", "id": "GO:0140141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140141", "evidence": [ { "database": "UniProtKB", "id": "F1SEQ3", "url": "https://www.uniprot.org/uniprotkb/F1SEQ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SER3-1", "uniprot_ac": "F1SER3", "uniprot_id": "F1SER3_PIG", "mass": { "chemical_mass": 26497.0, "monoisotopic_mass": 26497.0 }, "refseq": { "ac": "NP_001335888", "name": "pulmonary surfactant-associated protein A precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" }, "gene_names": [ { "name": "SFTPA1", "type": "recommended", "evidence": [ { "id": "F1SER3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SER3" } ] }, { "name": "PSAP", "type": "synonym", "evidence": [ { "id": "NP_001335888", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ] }, { "name": "PSP-A", "type": "synonym", "evidence": [ { "id": "NP_001335888", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ] }, { "name": "SFTPA1", "type": "synonym", "evidence": [ { "id": "NP_001335888", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ] }, { "name": "SFTPA", "type": "synonym", "evidence": [ { "id": "NP_001335888", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ] }, { "name": "SP-A", "type": "synonym", "evidence": [ { "id": "NP_001335888", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ] } ], "protein_names": [ { "name": "Pulmonary surfactant-associated protein A", "type": "recommended", "evidence": [ { "id": "F1SER3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SER3/entry#names_and_taxonomy" } ] }, { "name": "pulmonary surfactant-associated protein A precursor", "type": "synonym", "evidence": [ { "id": "NP_001335888", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ] }, { "name": "pulmonary surfactant-associated protein A", "type": "synonym", "evidence": [ { "id": "NP_001335888", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ] } ], "function": [ { "annotation": "Data suggest that transient exposure of surfactant to polymers like hyaluronan (HA) could be a promising strategy for the production of more efficient therapeutic surfactants SP-A, SP-B and SP-C preparations.", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" }, { "database": "PubMed", "id": "23983120", "url": "https://glygen.org/publication/PubMed/23983120" } ] }, { "annotation": "Identification of a polymorphism of the porcine SFTPA1 gene coding region that is associated with acute lung injury", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" }, { "database": "PubMed", "id": "25442010", "url": "https://glygen.org/publication/PubMed/25442010" } ] }, { "annotation": "In presence of calcium ions, it binds to surfactant phospholipids and contributes to lower the surface tension at the air-liquid interface in the alveoli of the mammalian lung and is essential for normal respiration. Enhances the expression of MYO18A/SP-R210 on alveolar macrophages.", "evidence": [ { "database": "UniProtKB", "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3#function" }, { "database": "UniProtKB", "id": "ARBA00037480", "url": "https://www.uniprot.org/uniprotkb/ARBA00037480#function" } ] }, { "annotation": "PSP-A plays a significant physiological role as an antioxidant protecting the lung during the oxidative stress.", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" }, { "database": "PubMed", "id": "15982924", "url": "https://glygen.org/publication/PubMed/15982924" } ] }, { "annotation": "Pulmonary surfactant-associated protein A (SP-A) is detected in thymus, trachea, lung, jejunum, and duodenum.", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" }, { "database": "PubMed", "id": "17420052", "url": "https://glygen.org/publication/PubMed/17420052" } ] }, { "annotation": "SP-A inhibited the infectivity of porcine reproductive and respiratory syndrome virus in Marc 145 cells and could reduce the total RNA and protein level.", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" }, { "database": "PubMed", "id": "27101074", "url": "https://glygen.org/publication/PubMed/27101074" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SFTPA1", "url": "https://www.uniprot.org/uniprotkb/F1SER3", "locus": { "chromosome": "14", "start_pos": 82091178, "end_pos": 82095393, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010336", "url": "https://www.ensembl.org/id/ENSSSCG00000010336" } ] } } ], "crossref": [ { "id": "ENSSSCG00000010336", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010336", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03591", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03591", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397503", "url": "https://www.ncbi.nlm.nih.gov/gene/397503", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051077", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051077", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:397503", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397503", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VRKHNTY", "url": "https://omabrowser.org/oma/group/VRKHNTY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24024", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24024", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24024:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24024:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SER3-1", "url": "https://www.uniprot.org/uniprotkb/F1SER3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRWPLALTFLLLAVSGLECDVKEVCLASPGIPGTPGSHGLPGRDGRDGIKGDPGPPGPMGPPGGMAGPPGQDGMIGAPGLPGERGEKGEPGERGPPGLPAHLDEELQSALHEIRHQILQSMGVLSFQEFMLAVGEKVFSTNGQSVAFDVIRELCARAGGRIAAPRSPEENEAIASIVKKHNTYAYLGLVEGPTAGDFFYLDGTPVNYTNWYPGEPRGRGKEKCVEMYTDGQWNDRNCQQYRLAICEF", "length": 248, "header": "tr|F1SER3-1|F1SER3_PIG Isoform 1 of Pulmonary surfactant-associated protein A OS=Sus scrofa OX=9823 GN=SFTPA1 PE=3 SV=1 CANONICAL=F1SER3-1" }, "isoforms": [ { "isoform_ac": "F1SER3-1", "url": "https://www.uniprot.org/uniprotkb/F1SER3/entry#F1SER3-1", "sequence": { "sequence": "MLRWPLALTFLLLAVSGLECDVKEVCLASPGIPGTPGSHGLPGRDGRDGIKGDPGPPGPMGPPGGMAGPPGQDGMIGAPGLPGERGEKGEPGERGPPGLPAHLDEELQSALHEIRHQILQSMGVLSFQEFMLAVGEKVFSTNGQSVAFDVIRELCARAGGRIAAPRSPEENEAIASIVKKHNTYAYLGLVEGPTAGDFFYLDGTPVNYTNWYPGEPRGRGKEKCVEMYTDGQWNDRNCQQYRLAICEF", "length": 248, "header": "tr|F1SER3-1|F1SER3_PIG Isoform 1 of Pulmonary surfactant-associated protein A OS=Sus scrofa OX=9823 GN=SFTPA1 PE=3 SV=1 CANONICAL=F1SER3-1" }, "locus": { "chromosome": "14", "start_pos": 82094455, "end_pos": 82092239, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011314.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011314.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011022.2", "url": "https://www.ensembl.org/id/ENSSSCP00000011022.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 194, "start_aa": "Thr", "end_pos": 194, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr194", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 35, "start_aa": "Thr", "end_pos": 35, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr35", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Pulmonary surfactant protein A inhibits the lipid peroxidation stimulated by linoleic acid hydroperoxide of rat lung mitochondria and microsomes.", "journal": "Biochimica et biophysica acta", "date": "2005-07-15", "authors": "Terrasa Ana M, Guajardo Margarita H, de Armas Sanabria Elizabeth, Catal\u00e1 Angel", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ], "reference": [ { "type": "PubMed", "id": "15982924", "url": "https://glygen.org/publication/PubMed/15982924" } ] }, { "title": "Expression sites of the collectin SP-D suggest its importance in first line host defence: power of combining in situ hybridisation, RT-PCR and immunohistochemistry.", "journal": "Molecular immunology", "date": "2007-07", "authors": "Her\u00edas M Veronica, Hogenkamp Astrid, van Asten Alphons J A M, Tersteeg Monique H G, van Eijk Martin, Haagsman Henk P", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ], "reference": [ { "type": "PubMed", "id": "17420052", "url": "https://glygen.org/publication/PubMed/17420052" } ] }, { "title": "Transient exposure of pulmonary surfactant to hyaluronan promotes structural and compositional transformations into a highly active state.", "journal": "The Journal of biological chemistry", "date": "2013-10-11", "authors": "Lopez-Rodriguez Elena, Cruz Antonio, Richter Ralf P, Taeusch H William, P\u00e9rez-Gil Jes\u00fas", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ], "reference": [ { "type": "PubMed", "id": "23983120", "url": "https://glygen.org/publication/PubMed/23983120" } ] }, { "title": "Identification and examination of a novel 9-bp insert/deletion polymorphism on porcine SFTPA1 exon 2 associated with acute lung injury using an oleic acid-acute lung injury model.", "journal": "Animal science journal = Nihon chikusan Gakkaiho", "date": "2015-06", "authors": "Zhang Yuebo, Zhang Longchao, Wang Ligang, Qiao Lijuan, Liang Jing, Yan Hua, Zhao Kebin, Liu Xin, Wang Lixian", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ], "reference": [ { "type": "PubMed", "id": "25442010", "url": "https://glygen.org/publication/PubMed/25442010" } ] }, { "title": "Antiviral activity of recombinant porcine surfactant protein A against porcine reproductive and respiratory syndrome virus in vitro.", "journal": "Archives of virology", "date": "2016-07", "authors": "Li Lan, Zheng Qisheng, Zhang Yuanpeng, Li Pengcheng, Fu Yanfeng, Hou Jibo, Xiao Xilong", "evidence": [ { "database": "RefSeq", "id": "NP_001335888", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335888" } ], "reference": [ { "type": "PubMed", "id": "27101074", "url": "https://glygen.org/publication/PubMed/27101074" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:397503", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397503", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7GV01-1", "protein_name": "Pulmonary surfactant-associated protein A", "gene_name": "LOC100757798", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSLCSLAFAIFLTVVAGIKCNGTEVCAGSPGIPGTPGNHGLPGRDGRDGVKGDPGPPGPMGPPGGMPGLPGRDGLPGAPGAPGEHGDKGEPGERGLPGFSAYLDEELQTELQEIRHKILQVMGVLSLHGSMLSVGEKVFSTNGQSVNFDTIRETCIRAGGNIAVPRSPEENEAISSIVNKHNTYAYLGMVEDQTPGDFRYLDGASVNYTNWYPGEPRGRGKEKCVEMYTDGQWNDKNCLQYRLAICEF", "length": 248 }, "evidence": [ { "id": "F1SER3", "url": "https://omabrowser.org/oma/group/F1SER3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P08427-1", "protein_name": "Pulmonary surfactant-associated protein A", "gene_name": "Sftpa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLCSLAFTLFLTVVAGIKCNVTDVCAGSPGIPGAPGNHGLPGRDGRDGVKGDPGPPGPMGPPGGMPGLPGRDGLPGAPGAPGERGDKGEPGERGLPGFPAYLDEELQTELYEIKHQILQTMGVLSLQGSMLSVGDKVFSTNGQSVNFDTIKEMCTRAGGNIAVPRTPEENEAIASIAKKYNNYVYLGMIEDQTPGDFHYLDGASVNYTNWYPGEPRGQGKEKCVEMYTDGTWNDRGCLQYRLAVCEF", "length": 248 }, "evidence": [ { "id": "F1SER3", "url": "https://omabrowser.org/oma/group/F1SER3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8IWL2-1", "protein_name": "Pulmonary surfactant-associated protein A1", "gene_name": "SFTPA1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWLCPLALNLILMAASGAVCEVKDVCVGSPGIPGTPGSHGLPGRDGRDGLKGDPGPPGPMGPPGEMPCPPGNDGLPGAPGIPGECGEKGEPGERGPPGLPAHLDEELQATLHDFRHQILQTRGALSLQGSIMTVGEKVFSSNGQSITFDAIQEACARAGGRIAVPRNPEENEAIASFVKKYNTYAYVGLTEGPSPGDFRYSDGTPVNYTNWYRGEPAGRGKEQCVEMYTDGQWNDRNCLYSRLTICEF", "length": 248 }, "evidence": [ { "id": "F1SER3", "url": "https://omabrowser.org/oma/group/F1SER3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "respiratory gaseous exchange by respiratory system", "id": "GO:0007585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007585", "evidence": [ { "database": "UniProtKB", "id": "F1SER3", "url": "https://www.uniprot.org/uniprotkb/F1SER3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SER3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SER3" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 152, "end_pos": 247, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 35, 194 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 207, "end_pos": 209 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SES4-1", "uniprot_ac": "F1SES4", "uniprot_id": "F1SES4_PIG", "mass": { "chemical_mass": 29050.0, "monoisotopic_mass": 29050.0 }, "refseq": {}, "gene_names": [ { "name": "FRG1", "type": "recommended", "evidence": [ { "id": "F1SES4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ] } ], "protein_names": [ { "name": "Protein FRG1", "type": "recommended", "evidence": [ { "id": "F1SES4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SES4/entry#names_and_taxonomy" } ] }, { "name": "FSHD region gene 1 protein", "type": "synonym", "evidence": [ { "id": "F1SES4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SES4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Binds to mRNA in a sequence-independent manner. May play a role in regulation of pre-mRNA splicing or in the assembly of rRNA into ribosomal subunits. May be involved in mRNA transport. May be involved in epigenetic regulation of muscle differentiation through regulation of activity of the histone-lysine N-methyltransferase KMT5B.", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4#function" }, { "database": "UniProtKB", "id": "ARBA00059473", "url": "https://www.uniprot.org/uniprotkb/ARBA00059473#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FRG1", "url": "https://www.uniprot.org/uniprotkb/F1SES4", "locus": { "chromosome": "17", "start_pos": 5780866, "end_pos": 5800464, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006996", "url": "https://www.ensembl.org/id/ENSSSCG00000006996" } ] } } ], "crossref": [ { "id": "F1SES4", "url": "https://alphafold.ebi.ac.uk/entry/F1SES4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006996", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006996", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23338", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23338", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR008999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12928", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12928", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12928:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12928:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06229", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06229", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SES4-1", "url": "https://www.uniprot.org/uniprotkb/F1SES4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEYSYVKSTKLVLKGTKTKSKKKKSKEKKRKREEDEETQLDIVGIWWTVTNFGEISGTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFLHETLLDRSDVYKPILFF", "length": 257, "header": "tr|F1SES4-1|F1SES4_PIG Isoform 1 of Protein FRG1 OS=Sus scrofa OX=9823 GN=FRG1 PE=3 SV=2 CANONICAL=F1SES4-1" }, "isoforms": [ { "isoform_ac": "F1SES4-1", "url": "https://www.uniprot.org/uniprotkb/F1SES4/entry#F1SES4-1", "sequence": { "sequence": "MAEYSYVKSTKLVLKGTKTKSKKKKSKEKKRKREEDEETQLDIVGIWWTVTNFGEISGTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGDIEAKSKTAGEEEMIKIRSCAERETKKKDDIPEEDKGNVKQCEINYVKKFQSFQDHKLKVSKEDSKILKKARKDGFLHETLLDRSDVYKPILFF", "length": 257, "header": "tr|F1SES4-1|F1SES4_PIG Isoform 1 of Protein FRG1 OS=Sus scrofa OX=9823 GN=FRG1 PE=3 SV=2 CANONICAL=F1SES4-1" }, "locus": { "chromosome": "17", "start_pos": 5800273, "end_pos": 5782198, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007661.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007661.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007454.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007454.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "pmid": "" }, { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "pmid": "" }, { "name": "Cajal body", "id": "GO:0015030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015030", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "pmid": "" }, { "name": "striated muscle dense body", "id": "GO:0055120", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055120", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "muscle organ development", "id": "GO:0007517", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007517", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "pmid": "" }, { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F1SES4", "url": "https://www.uniprot.org/uniprotkb/F1SES4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SES4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 257, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SES4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SES4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEV4-1", "uniprot_ac": "F1SEV4", "uniprot_id": "F1SEV4_PIG", "mass": { "chemical_mass": 65088.0, "monoisotopic_mass": 65088.0 }, "refseq": {}, "gene_names": [ { "name": "TOP1MT", "type": "recommended", "evidence": [ { "id": "F1SEV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ] } ], "protein_names": [ { "name": "DNA topoisomerase I", "type": "recommended", "evidence": [ { "id": "F1SEV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEV4/entry#names_and_taxonomy" } ] }, { "name": "5.6.2.1", "type": "synonym", "evidence": [ { "id": "F1SEV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEV4/entry#names_and_taxonomy" } ] }, { "name": "DNA topoisomerase 1", "type": "synonym", "evidence": [ { "id": "F1SEV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEV4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone.", "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4#function" }, { "database": "UniProtKB", "id": "RU365101", "url": "https://www.uniprot.org/uniprotkb/RU365101#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TOP1MT", "url": "https://www.uniprot.org/uniprotkb/F1SEV4", "locus": { "chromosome": "4", "start_pos": 1188130, "end_pos": 1148890, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006958", "url": "https://www.ensembl.org/id/ENSSSCG00000006958" } ] } } ], "crossref": [ { "id": "F1SEV4", "url": "https://alphafold.ebi.ac.uk/entry/F1SEV4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006958", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006958", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00659", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00659", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03488", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03488", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "F1SEV4", "url": "https://www.ebi.ac.uk/intact/interactors/id:F1SEV4*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR001631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014711", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014711", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014727", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014727", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018521", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018521", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025834", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025834", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10290", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10290", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10290:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10290:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02919", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02919", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14370", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14370", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEV4-1", "url": "https://www.uniprot.org/uniprotkb/F1SEV4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "WEEERSPRGVRWTQLEHRGPCFAPPYEPLPDGVRFYYDGKPMKLSLAAEEVATFYGKMLEHEYTTKEVFRHNFFRDWRKEMTAAERKVIKRLSKCDFTEIHRHFADRAAARRALPREEKQRLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVLPEDVTINCGRDSKVPEPPAGHQWKEVRSDRTVTWLAAWTENVQNATKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSREMKARQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEADGCPYVVEFDFLGKDSIRYYNKVPVEKPVYRNLQLFLENKDPGEELFDRLTTASLNKHLQDLMDGLTAKVFRTYNASITLQGQLRALTRAEDSIAAKLLSYNRANRAVAVLCNHQRAPPKTFEKSMQALRSKIEAKKQQVAEAKAELEKARAGHASREDGRSEAFLEKRRRRLEKLEEQLVRLGTQATDKEEGKQVALGTSKLNYLDPRISIAWCRRFGVPVEKIYNKTQREKFAWALDMAGEDFEF", "length": 560, "header": "tr|F1SEV4-1|F1SEV4_PIG Isoform 1 of DNA topoisomerase I OS=Sus scrofa OX=9823 GN=TOP1MT PE=3 SV=4 CANONICAL=F1SEV4-1" }, "isoforms": [ { "isoform_ac": "F1SEV4-1", "url": "https://www.uniprot.org/uniprotkb/F1SEV4/entry#F1SEV4-1", "sequence": { "sequence": "WEEERSPRGVRWTQLEHRGPCFAPPYEPLPDGVRFYYDGKPMKLSLAAEEVATFYGKMLEHEYTTKEVFRHNFFRDWRKEMTAAERKVIKRLSKCDFTEIHRHFADRAAARRALPREEKQRLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRGRGDHPKMGMLKRRVLPEDVTINCGRDSKVPEPPAGHQWKEVRSDRTVTWLAAWTENVQNATKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSREMKARQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEADGCPYVVEFDFLGKDSIRYYNKVPVEKPVYRNLQLFLENKDPGEELFDRLTTASLNKHLQDLMDGLTAKVFRTYNASITLQGQLRALTRAEDSIAAKLLSYNRANRAVAVLCNHQRAPPKTFEKSMQALRSKIEAKKQQVAEAKAELEKARAGHASREDGRSEAFLEKRRRRLEKLEEQLVRLGTQATDKEEGKQVALGTSKLNYLDPRISIAWCRRFGVPVEKIYNKTQREKFAWALDMAGEDFEF", "length": 560, "header": "tr|F1SEV4-1|F1SEV4_PIG Isoform 1 of DNA topoisomerase I OS=Sus scrofa OX=9823 GN=TOP1MT PE=3 SV=4 CANONICAL=F1SEV4-1" }, "locus": { "chromosome": "4", "start_pos": 1188028, "end_pos": 1155645, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007623.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007623.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007420.5", "url": "https://www.ensembl.org/id/ENSSSCP00000007420.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ], "pmid": "" }, { "name": "DNA topoisomerase type I (single strand cut, ATP-independent) activity", "id": "GO:0003917", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003917", "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ], "pmid": "" }, { "name": "mitochondrial nucleoid", "id": "GO:0042645", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042645", "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA replication", "id": "GO:0006260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006260", "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ], "pmid": "" }, { "name": "DNA topological change", "id": "GO:0006265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006265", "evidence": [ { "database": "UniProtKB", "id": "F1SEV4", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 388, "end_pos": 390, "annotation": "n_glycosylation_sequon" }, { "start_pos": 540, "end_pos": 542, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEV4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 560, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEV4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEV4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEV4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEV4" }, { "id": "SM00435", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00435" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA topoisomerase I eukaryotic-type", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 532, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 217, "end_pos": 219 }, { "start_pos": 388, "end_pos": 390 }, { "start_pos": 540, "end_pos": 542 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEV6-1", "uniprot_ac": "F1SEV6", "uniprot_id": "F1SEV6_PIG", "mass": { "chemical_mass": 100213.0, "monoisotopic_mass": 100213.0 }, "refseq": {}, "gene_names": [ { "name": "ZC3H3", "type": "recommended", "evidence": [ { "id": "F1SEV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEV6" } ] } ], "protein_names": [ { "name": "Zinc finger CCCH domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "F1SEV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEV6/entry#names_and_taxonomy" } ] }, { "name": "Smad-interacting CPSF-like factor", "type": "synonym", "evidence": [ { "id": "F1SEV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEV6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Required for the export of polyadenylated mRNAs from the nucleus. Enhances ACVR1B-induced SMAD-dependent transcription. Binds to single-stranded DNA but not to double-stranded DNA in vitro. Involved in RNA cleavage.", "evidence": [ { "database": "UniProtKB", "id": "F1SEV6", "url": "https://www.uniprot.org/uniprotkb/F1SEV6#function" }, { "database": "UniProtKB", "id": "ARBA00057285", "url": "https://www.uniprot.org/uniprotkb/ARBA00057285#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEV6", "url": "https://www.uniprot.org/uniprotkb/F1SEV6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZC3H3", "url": "https://www.uniprot.org/uniprotkb/F1SEV6", "locus": { "chromosome": "4", "start_pos": 1089738, "end_pos": 1010638, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006956", "url": "https://www.ensembl.org/id/ENSSSCG00000006956" } ] } } ], "crossref": [ { "id": "F1SEV6", "url": "https://alphafold.ebi.ac.uk/entry/F1SEV6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006956", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006956", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46156", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46156", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46156:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46156:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00642", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00642", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9930044", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SEV6", "url": "https://www.uniprot.org/uniprotkb/F1SEV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SEV6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEKEQLRRQIRLLQGLIDDYKNLHGHVSAPGTSAASQWQPAAYNSSRAFSAHDPRPSRRGFSPSHGPAWRKKYSLVNRPLGSSSDLPGDCATQPPLGVGGSQGPTPEQYVLERQVQLSPDQNMVIKIKPPPKPGSASAAGVLRGSLDEHEGPSWSPHRPQEGGGEAPGGQWQPSRPGRAKGSCGAEDPLPVCRRAPGKLRVVKSMSSVSDSPSEPRRTVSESAVVAKARFLPSSAPQRGSAAPGRKVGSHSVASCVPQLLGDGRASAGHPDQAAASGLVAGPARAAAGPRPMREPSLLVTCRASKFRKNNYKWVAASAKSPRAPRKALSPRAVAENVCKAPFSAAERAEKPHLRADPDAKPRRAAVAVAALPGASSSKYKWKASSSSASSASSFRWQSEAGAKDRASQPSPAPSRPPPGDRPAGGPGSSELLLGETPPSAYRVKSRTKIIRRRASAGLPGDKKSSPPHAAAAKSQFSLRRRQALRGKSSPVLKKTPGRGPPQVTRHRLCSLPPSRAHLPSKEASGLHSPRPAPASKVIQTRYRIVKETPASPLSTAPGPPALPSWRARRLSLSRSLVLNRPRPAAVGGKAQTGSPRWRSRGYRCIGGVLYKVSANKLSKTSGRPSGDGGSKPLLRAGRLDPAGSCSRSLASRAVQRSLAIVRQARQRRRKRKQEYCMYYNRFGRCNRGQHCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNSNCPYSHVYVSRRAEVCTDFLKGYCPLGAKCKKKHTLLCPDFSRRGVCPRGTQCQLLHRNRKRLGRRAATPTAPEPRSRASTSHGPRKSSGAQRPARQTTSSPTAEAAGSASPPSSPRVLPAASSSPSPCSPPSASASPSASLSLDQDAASAGTGSSSLSKLPSFISLQSSPSPGGQPGARTPRSPPTKDSGKSLHIKPRL", "length": 944, "header": "tr|F1SEV6-1|F1SEV6_PIG Isoform 1 of Zinc finger CCCH domain-containing protein 3 OS=Sus scrofa OX=9823 GN=ZC3H3 PE=4 SV=4 CANONICAL=F1SEV6-1" }, "isoforms": [ { "isoform_ac": "F1SEV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SEV6/entry#F1SEV6-1", "sequence": { "sequence": "MEEKEQLRRQIRLLQGLIDDYKNLHGHVSAPGTSAASQWQPAAYNSSRAFSAHDPRPSRRGFSPSHGPAWRKKYSLVNRPLGSSSDLPGDCATQPPLGVGGSQGPTPEQYVLERQVQLSPDQNMVIKIKPPPKPGSASAAGVLRGSLDEHEGPSWSPHRPQEGGGEAPGGQWQPSRPGRAKGSCGAEDPLPVCRRAPGKLRVVKSMSSVSDSPSEPRRTVSESAVVAKARFLPSSAPQRGSAAPGRKVGSHSVASCVPQLLGDGRASAGHPDQAAASGLVAGPARAAAGPRPMREPSLLVTCRASKFRKNNYKWVAASAKSPRAPRKALSPRAVAENVCKAPFSAAERAEKPHLRADPDAKPRRAAVAVAALPGASSSKYKWKASSSSASSASSFRWQSEAGAKDRASQPSPAPSRPPPGDRPAGGPGSSELLLGETPPSAYRVKSRTKIIRRRASAGLPGDKKSSPPHAAAAKSQFSLRRRQALRGKSSPVLKKTPGRGPPQVTRHRLCSLPPSRAHLPSKEASGLHSPRPAPASKVIQTRYRIVKETPASPLSTAPGPPALPSWRARRLSLSRSLVLNRPRPAAVGGKAQTGSPRWRSRGYRCIGGVLYKVSANKLSKTSGRPSGDGGSKPLLRAGRLDPAGSCSRSLASRAVQRSLAIVRQARQRRRKRKQEYCMYYNRFGRCNRGQHCPYIHDPEKVAVCTRFVRGTCKKTDGTCPFSHHVSKEKMPVCSYFLKGICSNSNCPYSHVYVSRRAEVCTDFLKGYCPLGAKCKKKHTLLCPDFSRRGVCPRGTQCQLLHRNRKRLGRRAATPTAPEPRSRASTSHGPRKSSGAQRPARQTTSSPTAEAAGSASPPSSPRVLPAASSSPSPCSPPSASASPSASLSLDQDAASAGTGSSSLSKLPSFISLQSSPSPGGQPGARTPRSPPTKDSGKSLHIKPRL", "length": 944, "header": "tr|F1SEV6-1|F1SEV6_PIG Isoform 1 of Zinc finger CCCH domain-containing protein 3 OS=Sus scrofa OX=9823 GN=ZC3H3 PE=4 SV=4 CANONICAL=F1SEV6-1" }, "locus": { "chromosome": "4", "start_pos": 1083722, "end_pos": 1010653, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007621.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007621.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007418.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007418.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 106, "start_aa": "Thr", "end_pos": 106, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr106", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEV6", "url": "https://www.uniprot.org/uniprotkb/F1SEV6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9930044", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "resource": "Reactome", "description": "Nuclear RNA decay" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SEV6", "url": "https://www.uniprot.org/uniprotkb/F1SEV6" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SEV6", "url": "https://www.uniprot.org/uniprotkb/F1SEV6" } ], "pmid": "" }, { "name": "R-SMAD binding", "id": "GO:0070412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070412", "evidence": [ { "database": "UniProtKB", "id": "F1SEV6", "url": "https://www.uniprot.org/uniprotkb/F1SEV6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SEV6", "url": "https://www.uniprot.org/uniprotkb/F1SEV6" } ], "pmid": "" }, { "name": "mRNA cleavage and polyadenylation specificity factor complex", "id": "GO:0005847", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005847", "evidence": [ { "database": "UniProtKB", "id": "F1SEV6", "url": "https://www.uniprot.org/uniprotkb/F1SEV6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEV6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 944, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEV6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEV6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEV6" }, { "id": "PS50103", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50103" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C3H1-type", "eco_id": "ECO_0000259", "start_pos": 671, "end_pos": 699, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 106 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEX9-1", "uniprot_ac": "F1SEX9", "uniprot_id": "F1SEX9_PIG", "mass": { "chemical_mass": 34015.0, "monoisotopic_mass": 34015.0 }, "refseq": { "ac": "XP_003123369", "name": "WD repeat domain-containing protein 83 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123369" }, "gene_names": [ { "name": "WDR83", "type": "recommended", "evidence": [ { "id": "F1SEX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEX9" } ] }, { "name": "WDR83", "type": "synonym", "evidence": [ { "id": "XP_003123369", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123369" } ] } ], "protein_names": [ { "name": "WD repeat domain-containing protein 83", "type": "recommended", "evidence": [ { "id": "F1SEX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEX9/entry#names_and_taxonomy" } ] }, { "name": "Mitogen-activated protein kinase organizer 1", "type": "synonym", "evidence": [ { "id": "F1SEX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEX9/entry#names_and_taxonomy" } ] }, { "name": "WD repeat domain-containing protein 83 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003123369", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123369" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEX9", "url": "https://www.uniprot.org/uniprotkb/F1SEX9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR83", "url": "https://www.uniprot.org/uniprotkb/F1SEX9", "locus": { "chromosome": "2", "start_pos": 66307653, "end_pos": 66312844, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013722", "url": "https://www.ensembl.org/id/ENSSSCG00000013722" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013722", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013722", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519823", "url": "https://www.ncbi.nlm.nih.gov/gene/100519823", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056551", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056551", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519823", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519823", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MCWDIRT", "url": "https://omabrowser.org/oma/group/MCWDIRT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SEX9", "url": "https://www.orthodb.org/?gene=F1SEX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22842", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22842", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22842:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22842:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5674135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003123369", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123369", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SEX9", "url": "https://www.uniprot.org/uniprotkb/F1SEX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SEX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGVLVLALPVGPSVVQSLAYHPTEPCLLTAMGGSVQCWREEAYEAD", "length": 311, "header": "tr|F1SEX9-1|F1SEX9_PIG Isoform 1 of WD repeat domain-containing protein 83 OS=Sus scrofa OX=9823 GN=WDR83 PE=3 SV=1 CANONICAL=F1SEX9-1" }, "isoforms": [ { "isoform_ac": "F1SEX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SEX9/entry#F1SEX9-1", "sequence": { "sequence": "MAFPEPKPRGPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEVLAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYTGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGVLVLALPVGPSVVQSLAYHPTEPCLLTAMGGSVQCWREEAYEAD", "length": 311, "header": "tr|F1SEX9-1|F1SEX9_PIG Isoform 1 of WD repeat domain-containing protein 83 OS=Sus scrofa OX=9823 GN=WDR83 PE=3 SV=1 CANONICAL=F1SEX9-1" }, "locus": { "chromosome": "2", "start_pos": 66312586, "end_pos": 66307832, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014996.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014996.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014592.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014592.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEX9", "url": "https://www.uniprot.org/uniprotkb/F1SEX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519823", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519823", "resource": "KEGG Pathway" }, { "id": "R-SSC-5674135", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "resource": "Reactome", "description": "MAP2K and MAPK activation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HCV6-1", "protein_name": "WD repeat domain-containing protein 83", "gene_name": "Wdr83", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAFPEPKPRAPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVFSDYVGSPITCTCFSQDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQKYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGALVLALSVGSSVVQSLAYHPTESCLLTAMGVSIQYWREETYEAEGGAG", "length": 315 }, "evidence": [ { "id": "F1SEX9", "url": "https://omabrowser.org/oma/group/F1SEX9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q54H44-1", "protein_name": "WD repeat domain-containing protein 83 homolog", "gene_name": "morg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVKISCNKVLSNHSGSVTVVKYNSDGGYCLSGSSDKSIKLYNVSKGSMIHSFEEHGYGIGDLVSTSDNKQLFSCAEKQLYQWDIASGQVIRRFQNAHNDTITSVCVNLDSTLLFSGSSDRLVKAWDLRTKSINPVQILDDAKDTITSIIVNEQTITHNHSHGHGHSHGNNNNNQPHTHTQKEVITSSVDGCIRTYDVRMGTLVTYEDTIPISSVSITKDKKCFIASCTDETVKLIDIDSYETLKEYKGHKNKVYKINSCSNFDDSLIISGSEDNDFYIYELLSGKLLSKLSGHSNIITHVDSHPSKNQFITSSTDCTIRIWDQSE", "length": 325 }, "evidence": [ { "id": "F1SEX9", "url": "https://omabrowser.org/oma/group/F1SEX9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5BLX8-1", "protein_name": "WD repeat domain-containing protein 83", "gene_name": "Wdr83", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFPEPKPRAPELPRKQLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVTSDYVGSPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQKYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGSLALALPVGSNVVQSLAYHPADPCLLTAMGGSIQYWREETYEAEGGAG", "length": 315 }, "evidence": [ { "id": "F1SEX9", "url": "https://omabrowser.org/oma/group/F1SEX9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BRX9-1", "protein_name": "WD repeat domain-containing protein 83", "gene_name": "WDR83", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAFPEPKPRPPELPQKRLKTLDCGQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSSLCSGGGDKAVVLWDVASGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSIRCWDCRSRRPEPVQTLDEARDGVSSVKVSDHEILAGSVDGRVRRYDLRMGQLFSDYVGSPITCTCFSRDGQCTLVSSLDSTLRLLDKDTGELLGEYKGHKNQEYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSGVVQSLAYHPTEPCLLTAMGGSVQCWREEAYEAEDGAG", "length": 315 }, "evidence": [ { "id": "F1SEX9", "url": "https://omabrowser.org/oma/group/F1SEX9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DAJ4-1", "protein_name": "WD repeat domain-containing protein 83", "gene_name": "Wdr83", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFPEPKPRAPELPQKRMKTLDCSQGAVRAVRFNVDGNYCLTCGSDKTLKLWNPLRGTLLRTYSGHGYEVLDAAGSFDNSHLCSGGGDKTVVLWDVATGQVVRKFRGHAGKVNTVQFNEEATVILSGSIDSSVRCWDCRSRKPEPVQTLDEARDGISSVKVSDHEILAGSVDGRVRRYDLRMGQVSSDYVGSPITCTCFSRDGQCTLISSLDSTLRLLDKDTGELLGEYVGHKNQQYKLDCCLSERDTHVVSCSEDGKVFFWDLVEGALALALPVGSNVVQSLAYHPTEPCLLTAMGGSIQYWREETYEAEGGAG", "length": 315 }, "evidence": [ { "id": "F1SEX9", "url": "https://omabrowser.org/oma/group/F1SEX9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VJL9-1", "protein_name": "WD repeat domain-containing protein 83", "gene_name": "MET30", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPEFENFNVKTTIDCKQGAVRAVRYNVDGTYCLSCGSDKKIKLWNPASGLLLKTYGGHADEVTDAAGSCDSSYIVSASLDKSIIYWDVSTGAPVRRLRSHAGGVRCVCFNEDSSIAISGGRDNAVMCWDIRTRRLDPVQVMKEARDCITTVATNENRIYAASLDGCVRTYDIRVGELTCDKIGEPITYLAQTRDEQCLVAGCQDSVVRLLDCETGGLLSEYRGHRGDDYHIECGILSNDAQIVTGSSDGDAFVYDLLDGKVLQRIRISDNGGVVHSLATHPKRQEMLFARRRDMYVFSTDLQIEEEQL", "length": 308 }, "evidence": [ { "id": "F1SEX9", "url": "https://omabrowser.org/oma/group/F1SEX9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SEX9", "url": "https://www.uniprot.org/uniprotkb/F1SEX9" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F1SEX9", "url": "https://www.uniprot.org/uniprotkb/F1SEX9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F1SEX9", "url": "https://www.uniprot.org/uniprotkb/F1SEX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SEX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEX9" }, { "id": "PF23098", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23098" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleolar protein 10-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 79, "end_pos": 227, "start_aa": "Asn", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 79, "end_pos": 81 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SEZ2-1", "uniprot_ac": "F1SEZ2", "uniprot_id": "F1SEZ2_PIG", "mass": { "chemical_mass": 20666.0, "monoisotopic_mass": 20666.0 }, "refseq": { "ac": "XP_003130512", "name": "interleukin-19", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130512" }, "gene_names": [ { "name": "IL19", "type": "recommended", "evidence": [ { "id": "F1SEZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2" } ] }, { "name": "IL19", "type": "synonym", "evidence": [ { "id": "XP_003130512", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130512" } ] } ], "protein_names": [ { "name": "Interleukin family protein", "type": "recommended", "evidence": [ { "id": "F1SEZ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2/entry#names_and_taxonomy" } ] }, { "name": "interleukin-19", "type": "synonym", "evidence": [ { "id": "XP_003130512", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130512" } ] } ], "function": [ { "annotation": "Immune regulatory cytokine.", "evidence": [ { "database": "UniProtKB", "id": "F1SEZ2", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2#function" }, { "database": "UniProtKB", "id": "RU368043", "url": "https://www.uniprot.org/uniprotkb/RU368043#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SEZ2", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IL19", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2", "locus": { "chromosome": "9", "start_pos": 67479813, "end_pos": 67469524, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015653", "url": "https://www.ensembl.org/id/ENSSSCG00000015653" } ] } } ], "crossref": [ { "id": "F1SEZ2", "url": "https://alphafold.ebi.ac.uk/entry/F1SEZ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015653", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015653", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100038024", "url": "https://www.ncbi.nlm.nih.gov/gene/100038024", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100038024", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100038024", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FLYMQKA", "url": "https://omabrowser.org/oma/group/FLYMQKA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SEZ2", "url": "https://www.orthodb.org/?gene=F1SEZ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48482", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48482", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48482:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48482:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00726", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00726", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5684996", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5684996", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854691", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854691", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003130512", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130512", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SEZ2", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SEZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKARCVSLCLLGTMLFLCSAHARGLRRCLISIDMHRIEESFRGIKKAIQAKDTMQNVTILSPSESLHSIKPLDACCMTKNLLAFYVDRVFKDHQELDPQLLRKISSIANSFLYMQKTLQQCHEQRLCHCRQEATNATRIIHDNYDQLEVRSAAIKSLGELDIFLAWIDKNHQGTSDASGQGT", "length": 182, "header": "tr|F1SEZ2-1|F1SEZ2_PIG Isoform 1 of Interleukin family protein OS=Sus scrofa OX=9823 GN=IL19 PE=3 SV=2 CANONICAL=F1SEZ2-1" }, "isoforms": [ { "isoform_ac": "F1SEZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2/entry#F1SEZ2-1", "sequence": { "sequence": "MKARCVSLCLLGTMLFLCSAHARGLRRCLISIDMHRIEESFRGIKKAIQAKDTMQNVTILSPSESLHSIKPLDACCMTKNLLAFYVDRVFKDHQELDPQLLRKISSIANSFLYMQKTLQQCHEQRLCHCRQEATNATRIIHDNYDQLEVRSAAIKSLGELDIFLAWIDKNHQGTSDASGQGT", "length": 182, "header": "tr|F1SEZ2-1|F1SEZ2_PIG Isoform 1 of Interleukin family protein OS=Sus scrofa OX=9823 GN=IL19 PE=3 SV=2 CANONICAL=F1SEZ2-1" }, "locus": { "chromosome": "9", "start_pos": 67479153, "end_pos": 67472067, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017050.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017050.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016595.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016595.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SEZ2", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100038024", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100038024", "resource": "KEGG Pathway" }, { "id": "R-SSC-5684996", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5684996", "resource": "Reactome", "description": "MAPK1/MAPK3 signaling" }, { "id": "R-SSC-8854691", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854691", "resource": "Reactome", "description": "Interleukin-20 family signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BCI0-1", "protein_name": "Interleukin family protein", "gene_name": "IL19", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKAPCVSLCLLGAGLFLCSVHARGLRRCLISMNLHRVEESFRGIKTAIQAKDTFQNVTILSPSETLHGIKPLDVCCVTKNLLAFYVDRVFKDHQELNPQIMRKISSLANSFLYMQKTLQQCQNLCHCRQEATNATRIIHDNYDQLEVRSAAVKSLGELDVFLAWIDKHHRGTSAASR", "length": 177 }, "evidence": [ { "id": "F1SEZ2", "url": "https://omabrowser.org/oma/group/F1SEZ2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1C5G0-1", "protein_name": "Interleukin family protein", "gene_name": "LOC107055197", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLGSRVLLCLCSMTCCLTMLPAAGNTILHFGPCRISMSMSEIRAGFTAIKTNIQARDPIRTLSILSHPHSLHRVQPSDKCCIVHKVFNFYVDKVFKHCQTENSYINRKISSIANSFLSIKRKLEQCHDENKCLCGQEPTERFKQILVNYEGLNVTSAAMKSLGELDILLDWMEKSP", "length": 176 }, "evidence": [ { "id": "F1SEZ2", "url": "https://omabrowser.org/oma/group/F1SEZ2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3GZS9-1", "protein_name": "Interleukin family protein", "gene_name": "Il19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKAQNISHWLLGMALVLCSVHTHSLRRCLISVDRSLIEKSFPEIKRALQTNDTFPNVTILSTLENLKSIQPVDVCCVTSRLLTFYRDRVFKDHQETSPEVMRQISSIANSFLYMQKTLEQCQVHNQCHCSQEATNATRTIHDNYDQLEASSAALKSLGELDIFLAWIDENHQETSTA", "length": 177 }, "evidence": [ { "id": "F1SEZ2", "url": "https://omabrowser.org/oma/group/F1SEZ2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8CJ70-1", "protein_name": "Interleukin-19", "gene_name": "Il19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTQCASTWLLGMTLILCSVHIYSLRRCLISVDMRLIEKSFHEIKRAMQTKDTFKNVTILSLENLRSIKPGDVCCMTNNLLTFYRDRVFQDHQERSLEVLRRISSIANSFLCVQKSLERCQVHRQCNCSQEATNATRIIHDNYNQLEVSSAALKSLGELNILLAWIDRNHLETPAA", "length": 176 }, "evidence": [ { "id": "F1SEZ2", "url": "https://omabrowser.org/oma/group/F1SEZ2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UHD0-1", "protein_name": "Interleukin-19", "gene_name": "IL19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLQCVSLWLLGTILILCSVDNHGLRRCLISTDMHHIEESFQEIKRAIQAKDTFPNVTILSTLETLQIIKPLDVCCVTKNLLAFYVDRVFKDHQEPNPKILRKISSIANSFLYMQKTLRQCQEQRQCHCRQEATNATRVIHDNYDQLEVHAAAIKSLGELDVFLAWINKNHEVMFSA", "length": 177 }, "evidence": [ { "id": "F1SEZ2", "url": "https://omabrowser.org/oma/group/F1SEZ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SEZ2", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F1SEZ2", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2" } ], "pmid": "" }, { "name": "negative regulation of low-density lipoprotein particle clearance", "id": "GO:0010989", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010989", "evidence": [ { "database": "UniProtKB", "id": "F1SEZ2", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cytokine activity", "id": "GO:0005125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005125", "evidence": [ { "database": "UniProtKB", "id": "F1SEZ2", "url": "https://www.uniprot.org/uniprotkb/F1SEZ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SEZ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 182, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SEZ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SEZ2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SF23-1", "uniprot_ac": "F1SF23", "uniprot_id": "F1SF23_PIG", "mass": { "chemical_mass": 57956.0, "monoisotopic_mass": 57956.0 }, "refseq": {}, "gene_names": [ { "name": "NEPN", "type": "recommended", "evidence": [ { "id": "F1SF23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF23" } ] } ], "protein_names": [ { "name": "Nephrocan", "type": "synonym", "evidence": [ { "id": "F1SF23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF23/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF23", "url": "https://www.uniprot.org/uniprotkb/F1SF23" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NEPN", "url": "https://www.uniprot.org/uniprotkb/F1SF23", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000004252", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004252", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TCPRRCS", "url": "https://omabrowser.org/oma/group/TCPRRCS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SF23", "url": "https://www.orthodb.org/?gene=F1SF23", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF210", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF210", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SF23", "url": "https://www.uniprot.org/uniprotkb/F1SF23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF23-1", "url": "https://www.uniprot.org/uniprotkb/F1SF23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYLLYTFLVLLSLSYGFDPNCPGRCSCDSEQSVQCYRLLEVPSGIPSTTKKLYISHSKIQHLQLSNFIQMLALEDFILLASGTESVENDTFKTLSTLKTLELWKNKLRRIPSALPASLEVLKLNDNSISVLHRSDFEGLKKLTILELKNNLISSLSPSTLSSLVSLQSLVLDGNSIETVEGPLALSHLTHMSMENNKLHLLPAGFFTSLQSLQFLSLSSNFLTQIPINLPKSLLSLKMERNRLKVVSFEDLKHLENLSHLYLSENSLSSFDGAQLLANLTTLELSQNQLQMLPLRLPARLQKLDISNNLIQKVTAQDFQDLRDLKHLFLDNNIVSLFEAGALQRCSQLSNLALEQNLLLSIPLRLPGTLARLDLKGNAIQDIAERELKDLKQLQVLNLRNNKISALDLKALEVLPRLRYLYLDGNPWNCTCSLLRAREVLKAKGTDVRGGRCAAPAERQGENWMSSKKIMRQCEHHLHLTEKNKETKKKPKPEEHSSIRINMDDDYYDYEID", "length": 512, "header": "tr|F1SF23-1|F1SF23_PIG Isoform 1 of Nephrocan OS=Sus scrofa OX=9823 GN=NEPN PE=4 SV=2 CANONICAL=F1SF23-1" }, "isoforms": [ { "isoform_ac": "F1SF23-1", "url": "https://www.uniprot.org/uniprotkb/F1SF23/entry#F1SF23-1", "sequence": { "sequence": "MYLLYTFLVLLSLSYGFDPNCPGRCSCDSEQSVQCYRLLEVPSGIPSTTKKLYISHSKIQHLQLSNFIQMLALEDFILLASGTESVENDTFKTLSTLKTLELWKNKLRRIPSALPASLEVLKLNDNSISVLHRSDFEGLKKLTILELKNNLISSLSPSTLSSLVSLQSLVLDGNSIETVEGPLALSHLTHMSMENNKLHLLPAGFFTSLQSLQFLSLSSNFLTQIPINLPKSLLSLKMERNRLKVVSFEDLKHLENLSHLYLSENSLSSFDGAQLLANLTTLELSQNQLQMLPLRLPARLQKLDISNNLIQKVTAQDFQDLRDLKHLFLDNNIVSLFEAGALQRCSQLSNLALEQNLLLSIPLRLPGTLARLDLKGNAIQDIAERELKDLKQLQVLNLRNNKISALDLKALEVLPRLRYLYLDGNPWNCTCSLLRAREVLKAKGTDVRGGRCAAPAERQGENWMSSKKIMRQCEHHLHLTEKNKETKKKPKPEEHSSIRINMDDDYYDYEID", "length": 512, "header": "tr|F1SF23-1|F1SF23_PIG Isoform 1 of Nephrocan OS=Sus scrofa OX=9823 GN=NEPN PE=4 SV=2 CANONICAL=F1SF23-1" }, "locus": { "chromosome": "1", "start_pos": 44229528, "end_pos": 44205554, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004699.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004699.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004591.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004591.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SF23", "url": "https://www.uniprot.org/uniprotkb/F1SF23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LVZ7-1", "protein_name": "Nephrocan isoform X1", "gene_name": "LOC100760022", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHLLCACLLWFSLSNGLSADCPGRCSCESMQFVQCYRLMEVPSGIPSTTKSLYISHSKIQHLQLSNFTGLLALEDFILLASGTESVENDTFKTLSTLRTLEFWKNKLRRVPSALPASLEVLKLNENSICALHASDFEGLKKLKVLELKNNLISSLSPSMLPSLISLRSLMVDGNNIESLAGPLSLPHLKYMSVENNKLHLIPGNVFTSLQNLQFLSFSGNFLTKIPTNLPKSLLSLKMERNQLKVVRFRDVRHLENLSRLYLSENFLSSIDGVQLLTNLTTLEVSQNRLQTLPPRLPARLQKLDCSSNFIQKVAAPEFQDLRDLKHLFLDNNVVSVFEAGALQKCSQLSNLALEQNLLLSIPLRLPKTLARLDLKGNAIQNMSERELRDLKLLQVLNLRNNKISALDLKALEGLPRLRHLYLDGNPWNCTCSVLRAREVLKAKGTDVKGGQCAAPAERQGESWMSSKKIVRQCEHHLHQNEKSKENKKKLKLEDSSSSRLSMDDDDDDYEID", "length": 512 }, "evidence": [ { "id": "F1SF23", "url": "https://omabrowser.org/oma/group/F1SF23/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6AJL1-1", "protein_name": "Nephrocan", "gene_name": "Nepn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHLLWAFLLWLSLSNVLGANCPGRCSCDSLQSVQCYRLLEVPSGIPSTTRRLYISHSRIQHLQLSNLTQLLALEDFILLASGTESIENDTFKTLTTLKTLELWKNKLRRVPSALPANLEVLKLNDNSICALHGSDFEGLSNLKVLELKNNLISSLSPSMLSSLVSLQSLLVDGNNIESVTGPLSLPNLKYMSMEKNKLHLISGNVFTSLQNLQFLSFSGNFLTKIPINLPKSLLSLKMERNQLKVVRFRDMRHLENLSHLYLSENLLSSIDGAQLLTNLTTLEASQNRLQMLPPRLPSRLQKLDCSSNFIQRVTAPEFQDLRDLKHLFLDNNVVSLFEAGALQKCSQLSNLALEQNLLLSIPLRLPKTLARLDLKGNAIQDMAERELRDLKQLQVLNLRNNKISALDLKALEGLPRLRHLYLDGNPWNCTCSLLRAREVLKAKGTDVKGGQCAAPAERQGESWMSSKKILKQCEHHLEQNERGKETKKKPKPEDSSSIRPSMDDDDDDYEID", "length": 512 }, "evidence": [ { "id": "F1SF23", "url": "https://omabrowser.org/oma/group/F1SF23/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CQ76-1", "protein_name": "Nephrocan", "gene_name": "Nepn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPLWAFLLGLSLTNGLSANCPGRCSCDSMQSVQCYRLMELPSGIPSTTKRLYISHSRIQHLQLSNFTGLLALEDFILLASGTESIENDTFKTLSTLKTLELWKNKLRQVPSALPANLEVLKLNDNAICALRGSEFEGLKNLKVLELKNNLISSLSPSMLSPLASLQSLMVDGNNIESVVGPLSLPHLKYMSMENNQLHLIPGNVFTSLQNLQFLSFSGNFLTKIPINLPKSLLSLKMERNQLKVVRFRDMKHLENLSHLYLSENFLSSIDGAQQLTNLTTLEVSQNQLQMLPPRLPSRLQKLDCSSNFIQRVTAPEFQDLRDLKHLFLDNNVVSLFEAGALQRCSQLSNLALEQNLLLSIPLRLPKTLARLDLKGNAIQDMAERELRDLKQLQVLNLRNNRISALDFKALEGLPRLRHLYLDGNPWNCTCSLLRAREVLKAKGTDVKGGQCAAPAERQGESWMSSKKILRQCEHHLQQSEKSKETKKKPKPEDSSSIRLNMDDDDDDYEID", "length": 512 }, "evidence": [ { "id": "F1SF23", "url": "https://omabrowser.org/oma/group/F1SF23/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SF23", "url": "https://www.uniprot.org/uniprotkb/F1SF23" } ], "pmid": "" }, { "name": "interstitial matrix", "id": "GO:0005614", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005614", "evidence": [ { "database": "UniProtKB", "id": "F1SF23", "url": "https://www.uniprot.org/uniprotkb/F1SF23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 428, "end_pos": 430, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 256, "end_pos": 258 }, { "start_pos": 278, "end_pos": 280 }, { "start_pos": 428, "end_pos": 430 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SF28-1", "uniprot_ac": "F1SF28", "uniprot_id": "F1SF28_PIG", "mass": { "chemical_mass": 39610.0, "monoisotopic_mass": 39610.0 }, "refseq": {}, "gene_names": [ { "name": "ZPBP", "type": "recommended", "evidence": [ { "id": "F1SF28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF28" } ] } ], "protein_names": [ { "name": "Zona pellucida binding protein", "type": "synonym", "evidence": [ { "id": "F1SF28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF28/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF28", "url": "https://www.uniprot.org/uniprotkb/F1SF28" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZPBP", "url": "https://www.uniprot.org/uniprotkb/F1SF28", "locus": { "chromosome": "9", "start_pos": 136105129, "end_pos": 136186744, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015627", "url": "https://www.ensembl.org/id/ENSSSCG00000015627" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015627", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015627", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR010857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048805", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048805", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GMNALIH", "url": "https://omabrowser.org/oma/group/GMNALIH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15443", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15443", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15443:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15443:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07354", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07354", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20626", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20626", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SF28", "url": "https://www.uniprot.org/uniprotkb/F1SF28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF28-1", "url": "https://www.uniprot.org/uniprotkb/F1SF28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEASAPDRARRGWRRARAAGSPLSRAAVVLLLSALVLRAPPSVGYLDRLPRSFHLTQESAKIVGSPNFPVKVYVMLHQKSPHVLCVTQRLRNFELVDPSFQWHGPKGKIVSENSTAQVTSTGSLVFQNFEESMSGVYTCFLEYKPTVEEVVKNLQLKYIIYAYREPRYYYQFTARYHAAPCNSIYNISFEKKLLQILSKLVLDLSCEVSLLKSECHRVKMQRAGLQNELFFTFSVSSLDTEKGPKPCAGHSCESSKRLSKAKNLIERFFNQQVEVLGRRAEPLPEIYYIEGTLQMVWINRCFPGYGMNILKHPKCPECCVICSPGTYNSRDGIHCLQCNSSLVFGAKACL", "length": 350, "header": "tr|F1SF28-1|F1SF28_PIG Isoform 1 of Zona pellucida binding protein OS=Sus scrofa OX=9823 GN=ZPBP PE=3 SV=2 CANONICAL=F1SF28-1" }, "isoforms": [ { "isoform_ac": "F1SF28-1", "url": "https://www.uniprot.org/uniprotkb/F1SF28/entry#F1SF28-1", "sequence": { "sequence": "MEASAPDRARRGWRRARAAGSPLSRAAVVLLLSALVLRAPPSVGYLDRLPRSFHLTQESAKIVGSPNFPVKVYVMLHQKSPHVLCVTQRLRNFELVDPSFQWHGPKGKIVSENSTAQVTSTGSLVFQNFEESMSGVYTCFLEYKPTVEEVVKNLQLKYIIYAYREPRYYYQFTARYHAAPCNSIYNISFEKKLLQILSKLVLDLSCEVSLLKSECHRVKMQRAGLQNELFFTFSVSSLDTEKGPKPCAGHSCESSKRLSKAKNLIERFFNQQVEVLGRRAEPLPEIYYIEGTLQMVWINRCFPGYGMNILKHPKCPECCVICSPGTYNSRDGIHCLQCNSSLVFGAKACL", "length": 350, "header": "tr|F1SF28-1|F1SF28_PIG Isoform 1 of Zona pellucida binding protein OS=Sus scrofa OX=9823 GN=ZPBP PE=3 SV=2 CANONICAL=F1SF28-1" }, "locus": { "chromosome": "9", "start_pos": 136186730, "end_pos": 136105215, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017021.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017021.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016566.2", "url": "https://www.ensembl.org/id/ENSSSCP00000016566.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SF28", "url": "https://www.uniprot.org/uniprotkb/F1SF28" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8J8XCE4-1", "protein_name": "Zona pellucida binding protein", "gene_name": "Zpbp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCTQEGSQARTPPADHPSGSGGVSVGPSFRPAVRQLPAAGGRAPGNDLLRRGSAVGGVWMEALAPGPALRGRRRARASGSVLSALSLAAVVLSALLRAPPAVGHLARVPRGFRLTQDTLKIVGSTHFPVSVYVMLHQKSPHVLCVTQRLRNTELVDPSFQWHGPKGKLVSENTTAQVTSTGSLIFQSFEETMSGVYTCFLEYKPTVEEPIKNLQLKYIVYAYREPRFYYQFTARYHAAPCNSIYNISFEKKLLQILSKLVLDLSCEISLIKSECHRVKMQRAGLQNELFFTFSVASIDTEKGSKPCTDHSCEASKRLSKAKNLIERFFIQQVEVLGKRAEPLPEIYYIEGTLQMVWVNRCFPGYGINILKHPKCPECCVVCSPGSFNPRDGTHCLQCNNSVVYGAKTCM", "length": 409 }, "evidence": [ { "id": "F1SF28", "url": "https://omabrowser.org/oma/group/F1SF28/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q62522-1", "protein_name": "Zona pellucida-binding protein 1", "gene_name": "Zpbp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEALAPGRAPRGRRRAGASGSVLSPLSLAAVLLCALLRAPPAVGHLARLPRSIHLTQDSLKIVGSTHFPVSVYVMLHQKSPHVLCVTQRLRNTELVDPSFQWHGPKGKLVSENTTAQVTSTGSLIFQSFEETMSGVYTCFLEYKPTVEESIKNLQLKYIVYAYREPRFYYQFTARYHAAPCNSIYNISFEKKLLQILSKLVLDLSCEISLIKSECHRVKMQRAGLQNELFFTFSVASIDTEKGSKPCTDHSCEASKRLSKAKNLIERFFIQQVEVLGKRAEPLPEIYYIEGTLQMVWVNRCFPGYGINVLKHPKCPECCVVCSPGSFNPRDGTHCLQCNNSLVYGAKTCM", "length": 350 }, "evidence": [ { "id": "F1SF28", "url": "https://omabrowser.org/oma/group/F1SF28/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BS86-1", "protein_name": "Zona pellucida-binding protein 1", "gene_name": "ZPBP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAFALGPARRGRRRTRAAGSLLSRAAILLFISAFLVRVPSSVGHLVRLPRAFRLTKDSVKIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPKGKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCFLEYKPTVEEIVKRLQLKYAIYAYREPHYYYQFTARYHAAPCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQRAGLQNELFFAFSVSSLDTEKGPKRCTDHNCEPYKRLFKAKNLIERFFNQQVEILGRRAEQLPQIYYIEGTLQMVWINRCFPGYGMNVQQHPKCPECCVICSPGSYNPRDGIHCLQCNSSLVYGAKTCL", "length": 351 }, "evidence": [ { "id": "F1SF28", "url": "https://omabrowser.org/oma/group/F1SF28/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SF28", "url": "https://www.uniprot.org/uniprotkb/F1SF28" } ], "pmid": "" }, { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "F1SF28", "url": "https://www.uniprot.org/uniprotkb/F1SF28" } ], "pmid": "" }, { "name": "zona pellucida receptor complex", "id": "GO:0002199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002199", "evidence": [ { "database": "UniProtKB", "id": "F1SF28", "url": "https://www.uniprot.org/uniprotkb/F1SF28" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "binding of sperm to zona pellucida", "id": "GO:0007339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007339", "evidence": [ { "database": "UniProtKB", "id": "F1SF28", "url": "https://www.uniprot.org/uniprotkb/F1SF28" } ], "pmid": "" }, { "name": "acrosome assembly", "id": "GO:0001675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001675", "evidence": [ { "database": "UniProtKB", "id": "F1SF28", "url": "https://www.uniprot.org/uniprotkb/F1SF28" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SF28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF28" }, { "id": "PF20626", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20626" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zona-pellucida-binding protein 1/2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 301, "end_pos": 350, "start_aa": "Cys", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SF28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF28" }, { "id": "PF07354", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07354" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zona-pellucida-binding protein 1/2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 69, "end_pos": 164, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 186, "end_pos": 188 }, { "start_pos": 339, "end_pos": 341 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SF29-1", "uniprot_ac": "F1SF29", "uniprot_id": "F1SF29_PIG", "mass": { "chemical_mass": 35152.0, "monoisotopic_mass": 35152.0 }, "refseq": { "ac": "XP_020919566", "name": "brorin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919566" }, "gene_names": [ { "name": "VWC2", "type": "recommended", "evidence": [ { "id": "F1SF29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF29" } ] }, { "name": "VWC2", "type": "synonym", "evidence": [ { "id": "XP_020919566", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919566" } ] } ], "protein_names": [ { "name": "brorin", "type": "synonym", "evidence": [ { "id": "XP_020919566", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919566" } ] }, { "name": "von Willebrand factor C domain containing 2", "type": "synonym", "evidence": [ { "id": "F1SF29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF29/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF29", "url": "https://www.uniprot.org/uniprotkb/F1SF29" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VWC2", "url": "https://www.uniprot.org/uniprotkb/F1SF29", "locus": { "chromosome": "9", "start_pos": 136083616, "end_pos": 135982227, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015626", "url": "https://www.ensembl.org/id/ENSSSCG00000015626" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015626", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015626", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515158", "url": "https://www.ncbi.nlm.nih.gov/gene/100515158", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001007", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001007", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057856", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057856", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515158", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515158", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EKCHCEA", "url": "https://omabrowser.org/oma/group/EKCHCEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SF29", "url": "https://www.orthodb.org/?gene=F1SF29", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46252", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46252", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46252:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46252:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23331", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23331", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23333", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23333", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23334", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23334", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020919566", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919566", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SF29", "url": "https://www.uniprot.org/uniprotkb/F1SF29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF29-1", "url": "https://www.uniprot.org/uniprotkb/F1SF29-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSSTAMAVGALSSSLLVTCCLMVALCSPSIPLEKLAQAPEQPGQEKREHASRDGPGRVSELGRPARDEGGGGRDWKGKGGRGLTSREAWSRQKQAWPAQGGGAKAGDLQVRPRGDTPHEEPPAASAQDAAGSDPGPTLEPPEEYAYPDYRGKGCVDESGFVYAIGEKFAPGPSACPCLCTEEGPLCAQPECPRLHPRCIHVDTSQCCPQCKERKNYCEFRGKTYQTLEEFVVSPCERCRCEASGEVLCAVSACPQTECVDPVYEPDQCCPICKNGPNCFAETAVIPAGREVKTDECTICHCTYEEGTWRIERQAMCTRHECRQM", "length": 325, "header": "tr|F1SF29-1|F1SF29_PIG Isoform 1 of von Willebrand factor C domain containing 2 OS=Sus scrofa OX=9823 GN=VWC2 PE=4 SV=2 CANONICAL=F1SF29-1" }, "isoforms": [ { "isoform_ac": "F1SF29-1", "url": "https://www.uniprot.org/uniprotkb/F1SF29/entry#F1SF29-1", "sequence": { "sequence": "MPSSTAMAVGALSSSLLVTCCLMVALCSPSIPLEKLAQAPEQPGQEKREHASRDGPGRVSELGRPARDEGGGGRDWKGKGGRGLTSREAWSRQKQAWPAQGGGAKAGDLQVRPRGDTPHEEPPAASAQDAAGSDPGPTLEPPEEYAYPDYRGKGCVDESGFVYAIGEKFAPGPSACPCLCTEEGPLCAQPECPRLHPRCIHVDTSQCCPQCKERKNYCEFRGKTYQTLEEFVVSPCERCRCEASGEVLCAVSACPQTECVDPVYEPDQCCPICKNGPNCFAETAVIPAGREVKTDECTICHCTYEEGTWRIERQAMCTRHECRQM", "length": 325, "header": "tr|F1SF29-1|F1SF29_PIG Isoform 1 of von Willebrand factor C domain containing 2 OS=Sus scrofa OX=9823 GN=VWC2 PE=4 SV=2 CANONICAL=F1SF29-1" }, "locus": { "chromosome": "9", "start_pos": 136082705, "end_pos": 135983143, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055494.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055494.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057862.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057862.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SF29", "url": "https://www.uniprot.org/uniprotkb/F1SF29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515158", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515158", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BE14-1", "protein_name": "von Willebrand factor C domain containing 2", "gene_name": "VWC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPSSTAMAVGALSSSLLLTCCLMVALCSPRIPLEKLAQAPERPGQEKREHASRDGPGRVSELGRPARDEGGGGGRDWKGKSGRGLAGREAWSRQKQAWAAQGGGAGAGDLQGRPRGDTPHEEPPAAAAQDVAGPESEPTPEPPEEYAYPDYRGKGCVDESGFVYAIGEKFAPGPSACPCLCTEEGPLCAQPECPRLHPRCIHVDTSQCCPQCKERKNYCEFRGKTYQTLEEFVVSPCERCRCEASGEVLCAVSACPQTECVDPVYEPDQCCPICKNGPNCFAETAVIPAGREVKTDECTICHCTYEEGTWRIERQAMCTRHECRQM", "length": 326 }, "evidence": [ { "id": "F1SF29", "url": "https://omabrowser.org/oma/group/F1SF29/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BVA8-1", "protein_name": "von Willebrand factor C domain containing 2", "gene_name": "VWC2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSSTAMAIGALSSSLLVTCCLMVALCSSTIPLQKLARAQDKQEIKASQEKRDHASARDSQAGAGKVGEIGRSGREEGGRDWKGKGGRNYSSKESWTKQKQAWSSQGTGGKPASVPAQEQQDMAAEAPRPAEASSLPAAVASATPEPLEEYAYPDYRGKGCVDESGFVYAIGEKFAPGPSACPCLCTEEGPLCMQPECPRLHPRCVHVDTTQCCPQCKERKNYCEFRGKTYQSLEEFMVSPCEKCRCEASGEVLCTVSACPQTECVDPVYEPDQCCPICKNGTCAYAKSGAGCRENRHNSIECSCGFVEGEEEEKLQRVSGKVVKVTDTVASVGPNCFAETTVIPAGREVKTDECTICHCTYEEGTWRIERQAMCTRHECKQI", "length": 383 }, "evidence": [ { "id": "F1SF29", "url": "https://omabrowser.org/oma/group/F1SF29/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "M0RB53-1", "protein_name": "von Willebrand factor C domain containing 2", "gene_name": "Vwc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPSSSAMAVGALSSSLLVTCCLMVALCSPSIPLEKLAQAPEQPGQEKREHASRDSPGRVSELGRASRDEGSSARDWKSKGSRALSGREAWSKQKQAWAAQSGSAKAADWQVRPRGDTPQGEPPAAAQEAISLELMPTPELPEEYAYPDYRGKGCVDESGFVYAIGEKFAPGPSACPCLCTEEGPLCAQPECPRLHPRCIHVDTSQCCPQCKERKNYCEFRGKTYQTLEEFVVSPCERCRCEANGEVLCTVSACPQTECVDPVYEPDQCCPICKNGPNCFAETAVIPAGREVKTDECTICHCTYEEGTWRIERQAMCTRHECRQM", "length": 324 }, "evidence": [ { "id": "F1SF29", "url": "https://omabrowser.org/oma/group/F1SF29/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2TAL6-1", "protein_name": "Brorin", "gene_name": "VWC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPSSTAMAVGALSSSLLVTCCLMVALCSPSIPLEKLAQAPEQPGQEKREHASRDGPGRVNELGRPARDEGGSGRDWKSKSGRGLAGREPWSKLKQAWVSQGGGAKAGDLQVRPRGDTPQAEALAAAAQDAIGPELAPTPEPPEEYVYPDYRGKGCVDESGFVYAIGEKFAPGPSACPCLCTEEGPLCAQPECPRLHPRCIHVDTSQCCPQCKERKNYCEFRGKTYQTLEEFVVSPCERCRCEANGEVLCTVSACPQTECVDPVYEPDQCCPICKNGPNCFAETAVIPAGREVKTDECTICHCTYEEGTWRIERQAMCTRHECRQM", "length": 325 }, "evidence": [ { "id": "F1SF29", "url": "https://omabrowser.org/oma/group/F1SF29/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C8N3-1", "protein_name": "Brorin", "gene_name": "Vwc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPSSSAMAVGALSSSLLVTCCLMVALCSPSIPLEKLAQAPEQPGQEKREHASRDSPGRVSELGRASRDEGSSARDWKSKGSRALSGREAWSKQKQAWAAQGGSAKAADWQVRPRGDTPQGEPPAAAQEAISLELVPTPELPEEYAYPDYRGKGCVDESGFVYAIGEKFAPGPSACPCLCTEEGPLCAQPECPRLHPRCIHVDNSQCCPQCKEKKNYCEFRGKTYQTLEEFVVSPCERCRCEANGEVLCTVSACPQTECVDPVYEPDQCCPICKNGPNCFAETAVIPAGREVKTDECTICHCTYEEGTWRIERQAMCTRHECRQM", "length": 324 }, "evidence": [ { "id": "F1SF29", "url": "https://omabrowser.org/oma/group/F1SF29/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SF29", "url": "https://www.uniprot.org/uniprotkb/F1SF29" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SF29", "url": "https://www.uniprot.org/uniprotkb/F1SF29" } ], "pmid": "" }, { "name": "AMPA glutamate receptor complex", "id": "GO:0032281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032281", "evidence": [ { "database": "UniProtKB", "id": "F1SF29", "url": "https://www.uniprot.org/uniprotkb/F1SF29" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of BMP signaling pathway", "id": "GO:0030514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030514", "evidence": [ { "database": "UniProtKB", "id": "F1SF29", "url": "https://www.uniprot.org/uniprotkb/F1SF29" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SF29", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF29" }, { "id": "PS50184", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFC", "eco_id": "ECO_0000259", "start_pos": 216, "end_pos": 274, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SF37-1", "uniprot_ac": "F1SF37", "uniprot_id": "F1SF37_PIG", "mass": { "chemical_mass": 22995.0, "monoisotopic_mass": 22995.0 }, "refseq": { "ac": "XP_003121286", "name": "histone chaperone ASF1A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121286" }, "gene_names": [ { "name": "ASF1A", "type": "recommended", "evidence": [ { "id": "F1SF37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ] }, { "name": "ASF1A", "type": "synonym", "evidence": [ { "id": "XP_003121286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121286" } ] } ], "protein_names": [ { "name": "Anti-silencing function 1A histone chaperone", "type": "synonym", "evidence": [ { "id": "F1SF37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF37/entry#names_and_taxonomy" } ] }, { "name": "histone chaperone ASF1A", "type": "synonym", "evidence": [ { "id": "XP_003121286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121286" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASF1A", "url": "https://www.uniprot.org/uniprotkb/F1SF37", "locus": { "chromosome": "1", "start_pos": 43200415, "end_pos": 43214913, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004247", "url": "https://www.ensembl.org/id/ENSSSCG00000004247" } ] } } ], "crossref": [ { "id": "F1SF37", "url": "https://alphafold.ebi.ac.uk/entry/F1SF37", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004247", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004247", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519343", "url": "https://www.ncbi.nlm.nih.gov/gene/100519343", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006818", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006818", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519343", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519343", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DYADQEM", "url": "https://omabrowser.org/oma/group/DYADQEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SF37", "url": "https://www.orthodb.org/?gene=F1SF37", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12040", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12040", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12040:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12040:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2559584", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559584", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003121286", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121286", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF37-1", "url": "https://www.uniprot.org/uniprotkb/F1SF37-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKLEDPESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM", "length": 204, "header": "tr|F1SF37-1|F1SF37_PIG Isoform 1 of Anti-silencing function 1A histone chaperone OS=Sus scrofa OX=9823 GN=ASF1A PE=3 SV=1 CANONICAL=F1SF37-1" }, "isoforms": [ { "isoform_ac": "F1SF37-1", "url": "https://www.uniprot.org/uniprotkb/F1SF37/entry#F1SF37-1", "sequence": { "sequence": "MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKLEDPESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM", "length": 204, "header": "tr|F1SF37-1|F1SF37_PIG Isoform 1 of Anti-silencing function 1A histone chaperone OS=Sus scrofa OX=9823 GN=ASF1A PE=3 SV=1 CANONICAL=F1SF37-1" }, "locus": { "chromosome": "1", "start_pos": 43214570, "end_pos": 43201901, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004694.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004694.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004586.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004586.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519343", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519343", "resource": "KEGG Pathway" }, { "id": "R-SSC-2559584", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559584", "resource": "Reactome", "description": "Formation of Senescence-Associated Heterochromatin Foci (SAHF)" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2KIG1-1", "protein_name": "Histone chaperone ASF1A", "gene_name": "ASF1A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKLEDAESSNPNLPSLLSTDALPSASKGWSTSENSLNVMLESHMDCM", "length": 204 }, "evidence": [ { "id": "F1SF37", "url": "https://omabrowser.org/oma/group/F1SF37/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54N45-1", "protein_name": "Histone chaperone asf1", "gene_name": "asf1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHIRLTQVLIHNNPSSFNSPFIFDISFECVSPIKEDLEWKVIYVGSADNEKNDQVLDSILLGPVAVGQNQFVFEVDPPDANKIPKDDLLGVTVVFLICAYKGEDFIRVGYYVNNDYFEQELKDNPPETPDLSKIQRNVMDDKPVVTGFPIQWN", "length": 154 }, "evidence": [ { "id": "F1SF37", "url": "https://omabrowser.org/oma/group/F1SF37/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6NYY4-1", "protein_name": "Histone chaperone asf1b-A", "gene_name": "asf1ba", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAKVQVLNVAVLDNPSPFGNPFQFEITFECMEDLPEDLEWKIIYVGSAESEEYDQTLDSVLVGPVPAGRHMFVFQADAPNCSLIPETDAVGVTVVLITCTYRGQEFIRIGYYVNNEYTDTELRENPPLKPNYGQLQRNILASNPRVTRFHINWEGCAEKMEDSENVDPAPNAMLPPSCTPGKAPLLGLVPDNSMDCL", "length": 197 }, "evidence": [ { "id": "F1SF37", "url": "https://omabrowser.org/oma/group/F1SF37/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9CQE6-1", "protein_name": "Histone chaperone ASF1A", "gene_name": "Asf1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNAGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM", "length": 204 }, "evidence": [ { "id": "F1SF37", "url": "https://omabrowser.org/oma/group/F1SF37/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LS09-1", "protein_name": "Histone chaperone ASF1B", "gene_name": "ASF1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSINITNVTVLDNPAPFVNPFQFEISYECLTSLKDDLEWKLIYVGSAEDETYDQVLESVLVGPVNVGNYRFVLQADSPDPLKIREEDIIGVTVLLLTCSYMDQEFIRVGYYVNNDYDDEQLREEPPTKVLIDKVQRNILTDKPRVTKFPINFHPENEQTLGDGPAPTEPFADSVVNGEAPVFLEQPQKLQEIEQFDDSDVNGEAIALLDQPQNLQET", "length": 218 }, "evidence": [ { "id": "F1SF37", "url": "https://omabrowser.org/oma/group/F1SF37/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9V464-1", "protein_name": "Histone chaperone asf1", "gene_name": "asf1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAKVHITNVVVLDNPSSFFNPFQFELTFECIEELKEDLEWKMIYVGSAESEEHDQVLDTIYVGPVPEGRHIFVFQADPPDVSKIPEPDAVGVTIVLLTCSYRGQEFVRVGYYVNNDYADPEMRENPPTKPLFEKLTRNILASKPRVTRFKINWDYGHINGNGNGVENGHQDEMATDGPSTSEAASAVIHPEDDNSLAMPMENGIKALNENSNSLAMEC", "length": 218 }, "evidence": [ { "id": "F1SF37", "url": "https://omabrowser.org/oma/group/F1SF37/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y294-1", "protein_name": "Histone chaperone ASF1A", "gene_name": "ASF1A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKVQVNNVVVLDNPSPFYNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPNPGLIPDADAVGVTVVLITCTYRGQEFIRVGYYVNNEYTETELRENPPVKPDFSKLQRNILASNPRVTRFHINWEDNTEKLEDAESSNPNLQSLLSTDALPSASKGWSTSENSLNVMLESHMDCM", "length": 204 }, "evidence": [ { "id": "F1SF37", "url": "https://omabrowser.org/oma/group/F1SF37/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" }, { "name": "histone chaperone activity", "id": "GO:0140713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140713", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" }, { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" }, { "name": "DNA replication-dependent chromatin assembly", "id": "GO:0006335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006335", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" }, { "name": "replication fork processing", "id": "GO:0031297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031297", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" }, { "name": "DNA repair-dependent chromatin remodeling", "id": "GO:0140861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140861", "evidence": [ { "database": "UniProtKB", "id": "F1SF37", "url": "https://www.uniprot.org/uniprotkb/F1SF37" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SF37-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 204, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SF37-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SF37" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SF45-1", "uniprot_ac": "F1SF45", "uniprot_id": "F1SF45_PIG", "mass": { "chemical_mass": 129091.0, "monoisotopic_mass": 129091.0 }, "refseq": {}, "gene_names": [ { "name": "LAMB3", "type": "recommended", "evidence": [ { "id": "F1SF45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ] } ], "protein_names": [ { "name": "Laminin subunit beta-3", "type": "recommended", "evidence": [ { "id": "F1SF45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF45/entry#names_and_taxonomy" } ] }, { "name": "Epiligrin subunit beta", "type": "synonym", "evidence": [ { "id": "F1SF45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF45/entry#names_and_taxonomy" } ] }, { "name": "Kalinin B1 chain", "type": "synonym", "evidence": [ { "id": "F1SF45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF45/entry#names_and_taxonomy" } ] }, { "name": "Kalinin subunit beta", "type": "synonym", "evidence": [ { "id": "F1SF45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF45/entry#names_and_taxonomy" } ] }, { "name": "Laminin-5 subunit beta", "type": "synonym", "evidence": [ { "id": "F1SF45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF45/entry#names_and_taxonomy" } ] }, { "name": "Nicein subunit beta", "type": "synonym", "evidence": [ { "id": "F1SF45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF45/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45#function" }, { "database": "UniProtKB", "id": "ARBA00002418", "url": "https://www.uniprot.org/uniprotkb/ARBA00002418#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LAMB3", "url": "https://www.uniprot.org/uniprotkb/F1SF45", "locus": { "chromosome": "9", "start_pos": 133351197, "end_pos": 133311834, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015618", "url": "https://www.ensembl.org/id/ENSSSCG00000015618" } ] } } ], "crossref": [ { "id": "F1SF45", "url": "https://alphafold.ebi.ac.uk/entry/F1SF45", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015618", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015618", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00055", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00055", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22303", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22303", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008211", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008211", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574:SF268", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574:SF268", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00053", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00053", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00055", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00055", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24973", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24973", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF45-1", "url": "https://www.uniprot.org/uniprotkb/F1SF45-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLLLLLCFVLNSVLCTQQACSRGACYPPVGDLLIGRTRFLRASSTCGLTKPETYCTQYDEWKMKCCKCDSRLPHNYNSHRVENVISSSGPMRWWQSQNDVNPVSLQLDLDSKFQLQAITMDFKGPMPAGLLIERSSDFGKTWRVYQYLAADCTSAFPRVRQGQPQSWQDARCQPLPQRPDGRLDGAKVQLKLMDLASGIQASQSQKIQELGEITNLRVNFTRLAPLPQRGRHPPSAYYAVSQLRLQGSCFCHGHADRCAPNPRAPAGPSTSVQVHEVCVCQHNTAGPNCERCAPFYNNQPWSPAHDQDPHECQRCDCNGHSETCHFDPAVFAASQGTQGGVCDNCRDHTEGKNCERCQLHYFRNRRPGAPIQETCIPCECDPDGAVPGAPCDPVTGQCVCKEHVQGERCDLCKPGFTGLTYANPQGCHRCDCSVLGARRDMPCDEESGRCLCLPHVVGPKCDQCAPHHWKLASGRGCEPCACDPHNSLSPQCNQFTGQCPCREGFGGLTCSTAAIRLCPDRTYEDVATGCRACDCDFRGTEGPGCDKASGRCLCRPGLTGPRCDQCQRGYCDRYPVCVACHPCFQTYDAGLQERALRLRSLGNATASLRPGLGFEDLSLASQMQDAKSKMEQIQAVLGGAVVTEREVAQVAKAIFSLRQTLQALQPDLLPEEKTFLLPGDLENLDRNLNRLLVLYQSKKEQFEKISTADPSGAFRMLSAAYQRSSQATQKVSDSSRLLLRLRDGRREAEGLVQQVVREAGAGGPQLVALKLEMASLPDLTSAINKLCGGSRQTPCTAGACPGELCPRDNGTTCGSQCKGALPRAGGAFRTAGQVAEQLRGFNVQLQQTRQMIQAVEEAASKVQADARRLETQVSTSRTRMEEDVSRTQFLIQQVRDFLSDPDTDAATIQEVSEAVLALWLPTDSATVLRKMNEIQAIAARLPNVDLVLSQTKQDIARAHRLQAEAEQARSRAHAAEGQLEDVVGNLQQGTVALQEAQDTMHGTRRSLQLIQDRVAEVQQVLGPAERLVMDRMEQLGGLRARMEELSLQARLQQAQAAQARQLAEEASEQALSAQEGFERIKQKYAELKDRLGRSPRLGEQGGRILSVKMEAEELFGEAVAMMDRMKDMESELLRGSQAILLRSADLTGLEKHVEQIRSYINERVLYYATCK", "length": 1172, "header": "tr|F1SF45-1|F1SF45_PIG Isoform 1 of Laminin subunit beta-3 OS=Sus scrofa OX=9823 GN=LAMB3 PE=4 SV=4 CANONICAL=F1SF45-1" }, "isoforms": [ { "isoform_ac": "F1SF45-1", "url": "https://www.uniprot.org/uniprotkb/F1SF45/entry#F1SF45-1", "sequence": { "sequence": "MRLLLLLCFVLNSVLCTQQACSRGACYPPVGDLLIGRTRFLRASSTCGLTKPETYCTQYDEWKMKCCKCDSRLPHNYNSHRVENVISSSGPMRWWQSQNDVNPVSLQLDLDSKFQLQAITMDFKGPMPAGLLIERSSDFGKTWRVYQYLAADCTSAFPRVRQGQPQSWQDARCQPLPQRPDGRLDGAKVQLKLMDLASGIQASQSQKIQELGEITNLRVNFTRLAPLPQRGRHPPSAYYAVSQLRLQGSCFCHGHADRCAPNPRAPAGPSTSVQVHEVCVCQHNTAGPNCERCAPFYNNQPWSPAHDQDPHECQRCDCNGHSETCHFDPAVFAASQGTQGGVCDNCRDHTEGKNCERCQLHYFRNRRPGAPIQETCIPCECDPDGAVPGAPCDPVTGQCVCKEHVQGERCDLCKPGFTGLTYANPQGCHRCDCSVLGARRDMPCDEESGRCLCLPHVVGPKCDQCAPHHWKLASGRGCEPCACDPHNSLSPQCNQFTGQCPCREGFGGLTCSTAAIRLCPDRTYEDVATGCRACDCDFRGTEGPGCDKASGRCLCRPGLTGPRCDQCQRGYCDRYPVCVACHPCFQTYDAGLQERALRLRSLGNATASLRPGLGFEDLSLASQMQDAKSKMEQIQAVLGGAVVTEREVAQVAKAIFSLRQTLQALQPDLLPEEKTFLLPGDLENLDRNLNRLLVLYQSKKEQFEKISTADPSGAFRMLSAAYQRSSQATQKVSDSSRLLLRLRDGRREAEGLVQQVVREAGAGGPQLVALKLEMASLPDLTSAINKLCGGSRQTPCTAGACPGELCPRDNGTTCGSQCKGALPRAGGAFRTAGQVAEQLRGFNVQLQQTRQMIQAVEEAASKVQADARRLETQVSTSRTRMEEDVSRTQFLIQQVRDFLSDPDTDAATIQEVSEAVLALWLPTDSATVLRKMNEIQAIAARLPNVDLVLSQTKQDIARAHRLQAEAEQARSRAHAAEGQLEDVVGNLQQGTVALQEAQDTMHGTRRSLQLIQDRVAEVQQVLGPAERLVMDRMEQLGGLRARMEELSLQARLQQAQAAQARQLAEEASEQALSAQEGFERIKQKYAELKDRLGRSPRLGEQGGRILSVKMEAEELFGEAVAMMDRMKDMESELLRGSQAILLRSADLTGLEKHVEQIRSYINERVLYYATCK", "length": 1172, "header": "tr|F1SF45-1|F1SF45_PIG Isoform 1 of Laminin subunit beta-3 OS=Sus scrofa OX=9823 GN=LAMB3 PE=4 SV=4 CANONICAL=F1SF45-1" }, "locus": { "chromosome": "9", "start_pos": 133350806, "end_pos": 133314007, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017012.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017012.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016558.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016558.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" }, { "name": "laminin complex", "id": "GO:0043256", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043256", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" }, { "name": "laminin-5 complex", "id": "GO:0005610", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005610", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" }, { "name": "animal organ morphogenesis", "id": "GO:0009887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009887", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" }, { "name": "substrate adhesion-dependent cell spreading", "id": "GO:0034446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034446", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" }, { "name": "tissue development", "id": "GO:0009888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009888", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" }, { "name": "endodermal cell differentiation", "id": "GO:0035987", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035987", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" }, { "name": "basement membrane assembly", "id": "GO:0070831", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070831", "evidence": [ { "database": "UniProtKB", "id": "F1SF45", "url": "https://www.uniprot.org/uniprotkb/F1SF45" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 220, "end_pos": 222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 604, "end_pos": 606, "annotation": "n_glycosylation_sequon" }, { "start_pos": 810, "end_pos": 812, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SF45-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1172, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SF45-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SF45" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SF45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF45" }, { "id": "PS50027", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50027" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin EGF-like", "eco_id": "ECO_0000259", "start_pos": 250, "end_pos": 315, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SF45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF45" }, { "id": "PS51117", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51117" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin N-terminal", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 249, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 220, "end_pos": 222 }, { "start_pos": 604, "end_pos": 606 }, { "start_pos": 810, "end_pos": 812 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SF46-1", "uniprot_ac": "F1SF46", "uniprot_id": "F1SF46_PIG", "mass": { "chemical_mass": 11400.0, "monoisotopic_mass": 11400.0 }, "refseq": { "ac": "XP_003357652", "name": "G0/G1 switch protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357652" }, "gene_names": [ { "name": "G0S2", "type": "recommended", "evidence": [ { "id": "F1SF46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF46" } ] }, { "name": "G0S2", "type": "synonym", "evidence": [ { "id": "XP_003357652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357652" } ] } ], "protein_names": [ { "name": "G0/G1 switch 2", "type": "synonym", "evidence": [ { "id": "F1SF46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF46/entry#names_and_taxonomy" } ] }, { "name": "G0/G1 switch protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003357652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357652" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF46", "url": "https://www.uniprot.org/uniprotkb/F1SF46" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "G0S2", "url": "https://www.uniprot.org/uniprotkb/F1SF46", "locus": { "chromosome": "9", "start_pos": 133287325, "end_pos": 133287742, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015617", "url": "https://www.ensembl.org/id/ENSSSCG00000015617" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015617", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015617", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624161", "url": "https://www.ncbi.nlm.nih.gov/gene/100624161", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CEQQSLH", "url": "https://omabrowser.org/oma/group/CEQQSLH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15570", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15570", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15570:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15570:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15103", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15103", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003357652", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003357652", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SF46", "url": "https://www.uniprot.org/uniprotkb/F1SF46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF46-1", "url": "https://www.uniprot.org/uniprotkb/F1SF46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METIQELMPLAKELMAHKPSRKLVKLYLLGGLLAFLGAVLGLMETVCSPFTAAGRLRDREAAVAELRAARERKAPPEPAQLEKDKRRQTGRGCRALSHRLHAS", "length": 103, "header": "tr|F1SF46-1|F1SF46_PIG Isoform 1 of G0/G1 switch 2 OS=Sus scrofa OX=9823 GN=G0S2 PE=4 SV=3 CANONICAL=F1SF46-1" }, "isoforms": [ { "isoform_ac": "F1SF46-1", "url": "https://www.uniprot.org/uniprotkb/F1SF46/entry#F1SF46-1", "sequence": { "sequence": "METIQELMPLAKELMAHKPSRKLVKLYLLGGLLAFLGAVLGLMETVCSPFTAAGRLRDREAAVAELRAARERKAPPEPAQLEKDKRRQTGRGCRALSHRLHAS", "length": 103, "header": "tr|F1SF46-1|F1SF46_PIG Isoform 1 of G0/G1 switch 2 OS=Sus scrofa OX=9823 GN=G0S2 PE=4 SV=3 CANONICAL=F1SF46-1" }, "locus": { "chromosome": "9", "start_pos": 133287716, "end_pos": 133287408, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033526.2", "url": "https://www.ensembl.org/id/ENSSSCT00000033526.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031119.2", "url": "https://www.ensembl.org/id/ENSSSCP00000031119.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SF46", "url": "https://www.uniprot.org/uniprotkb/F1SF46" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LU39-1", "protein_name": "G0/G1 switch protein 2", "gene_name": "G0s2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MESVRELIPLAKEVMAQKSRGKLVKLYVLGSVLALFSVVLGLVETVCSPFSAAGHLRDQEAAVAELREACEQQSLHKQALIGRGKAQEATQCNRALSLRQHAS", "length": 103 }, "evidence": [ { "id": "F1SF46", "url": "https://omabrowser.org/oma/group/F1SF46/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P27469-1", "protein_name": "G0/G1 switch protein 2", "gene_name": "G0S2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METVQELIPLAKEMMAQKRKGKMVKLYVLGSVLALFGVVLGLMETVCSPFTAARRLRDQEAAVAELQAALERQALQKQALQEKGKQQDTVLGGRALSNRQHAS", "length": 103 }, "evidence": [ { "id": "F1SF46", "url": "https://omabrowser.org/oma/group/F1SF46/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5M840-1", "protein_name": "G0/G1 switch protein 2", "gene_name": "G0s2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESVQELIPLAKEMMTQKSRGKLVKLYVLGSVLAFFGVVLGLVETVCSPFTAASRLRDQEAAVAELRDACEQQSLHKQALIAEGKTQEATLCSRALSLRQHAS", "length": 103 }, "evidence": [ { "id": "F1SF46", "url": "https://omabrowser.org/oma/group/F1SF46/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q61585-1", "protein_name": "G0/G1 switch protein 2", "gene_name": "G0s2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESVQELIPLAKEMMAQKPRGKLVKLYVLGSVLALFGVVLGLVETVCSPFTAASRLRDQEAAVVELREACEQQSLHKQALLAGGKAQEATLCSRALSLRQHAS", "length": 103 }, "evidence": [ { "id": "F1SF46", "url": "https://omabrowser.org/oma/group/F1SF46/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SF46", "url": "https://www.uniprot.org/uniprotkb/F1SF46" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of extrinsic apoptotic signaling pathway", "id": "GO:2001238", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001238", "evidence": [ { "database": "UniProtKB", "id": "F1SF46", "url": "https://www.uniprot.org/uniprotkb/F1SF46" } ], "pmid": "" }, { "name": "extrinsic apoptotic signaling pathway", "id": "GO:0097191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097191", "evidence": [ { "database": "UniProtKB", "id": "F1SF46", "url": "https://www.uniprot.org/uniprotkb/F1SF46" } ], "pmid": "" }, { "name": "positive regulation of cold-induced thermogenesis", "id": "GO:0120162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120162", "evidence": [ { "database": "UniProtKB", "id": "F1SF46", "url": "https://www.uniprot.org/uniprotkb/F1SF46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SF51-1", "uniprot_ac": "F1SF51", "uniprot_id": "F1SF51_PIG", "mass": { "chemical_mass": 87118.0, "monoisotopic_mass": 87118.0 }, "refseq": {}, "gene_names": [ { "name": "UTP25", "type": "recommended", "evidence": [ { "id": "F1SF51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ] } ], "protein_names": [ { "name": "U3 small nucleolar RNA-associated protein 25 homolog", "type": "recommended", "evidence": [ { "id": "F1SF51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF51/entry#names_and_taxonomy" } ] }, { "name": "Digestive organ expansion factor homolog", "type": "synonym", "evidence": [ { "id": "F1SF51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF51/entry#names_and_taxonomy" } ] }, { "name": "UTP25 small subunit processor component", "type": "synonym", "evidence": [ { "id": "F1SF51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF51/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the ribosomal small subunit processome for the biogenesis of ribosomes, functions in pre-ribosomal RNA (pre-rRNA) processing. Essential for embryonic development in part through the regulation of p53 pathway. Controls the expansion growth of digestive organs and liver. Also involved in the sympathetic neuronal development. Mediates, with CAPN3, the proteasome-independent degradation of p53/TP53.", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51#function" }, { "database": "UniProtKB", "id": "ARBA00055734", "url": "https://www.uniprot.org/uniprotkb/ARBA00055734#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UTP25", "url": "https://www.uniprot.org/uniprotkb/F1SF51", "locus": { "chromosome": "9", "start_pos": 133105063, "end_pos": 133141217, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015611", "url": "https://www.ensembl.org/id/ENSSSCG00000015611" } ] } } ], "crossref": [ { "id": "F1SF51", "url": "https://alphafold.ebi.ac.uk/entry/F1SF51", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015611", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015611", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR010678", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010678", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SF51", "url": "https://www.orthodb.org/?gene=F1SF51", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12933", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12933", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12933:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12933:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06862", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06862", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22916", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22916", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF51-1", "url": "https://www.uniprot.org/uniprotkb/F1SF51-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKRGSRSQSQLINTLTKKQKKHLRDFGEEHPFYDRVSRKEAKPQICHLSESSDSSSSESEAESEPEQVSGYHRLLATLKSVSKEEEEEEEEEEEEEEEEEGSVVDEAEMDLEEGDGDVSAEEDLAAESADTRERGPLPADPAGKDGHGLPGTSQESPEEFTDVKHESLFSLETNFLEEESGGHTSLNASQDPFVQHVHKELKEKEIQAVATNPKTTHELKWPILGQLVFSSKFQKLETFKPPKDIDLKSLHLQKPLESTWTKTNSQFLSGSQKSGSPFTPLQKELFLIMNSYRDLFYPERTALKNGEEIRHVYCLHAINHVLKANAQVLGNNSRRRSQKLGVGDDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISLLEGDSKKQIIVSNKKRFNGEYGSDPEERPPNLKRPEDYEAVFVGNIDDHFRIGVAILQRSIRLYAPFYSSDILIASPLGLRTILGGEGEKKRDFDFLSSIELLIIDQADIYLMQNWEHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCVNAQGQVAVRNVPVTGSISHVLVQLPHVFQRMEAQDLASVIDARFAFFVNKVLPQYRDAVMSHTLLYVPSYFDFVRLRNYFKKEELSFTHICEYTQRPAVSRARHFFRQGEKQFLLLTERFHFYKRYTIKGIRNLIFYELPTYPHFYSEVCNMLRATTSGEEAAWTCTVLYSKYDAQRLAAVVGVERAAQMLRSEKSVHLFITGER", "length": 760, "header": "tr|F1SF51-1|F1SF51_PIG Isoform 1 of U3 small nucleolar RNA-associated protein 25 homolog OS=Sus scrofa OX=9823 GN=UTP25 PE=3 SV=3 CANONICAL=F1SF51-1" }, "isoforms": [ { "isoform_ac": "F1SF51-1", "url": "https://www.uniprot.org/uniprotkb/F1SF51/entry#F1SF51-1", "sequence": { "sequence": "MGKRGSRSQSQLINTLTKKQKKHLRDFGEEHPFYDRVSRKEAKPQICHLSESSDSSSSESEAESEPEQVSGYHRLLATLKSVSKEEEEEEEEEEEEEEEEEGSVVDEAEMDLEEGDGDVSAEEDLAAESADTRERGPLPADPAGKDGHGLPGTSQESPEEFTDVKHESLFSLETNFLEEESGGHTSLNASQDPFVQHVHKELKEKEIQAVATNPKTTHELKWPILGQLVFSSKFQKLETFKPPKDIDLKSLHLQKPLESTWTKTNSQFLSGSQKSGSPFTPLQKELFLIMNSYRDLFYPERTALKNGEEIRHVYCLHAINHVLKANAQVLGNNSRRRSQKLGVGDDDDFRDQGLTRPKVLIVVPFREAALRVVQLFISLLEGDSKKQIIVSNKKRFNGEYGSDPEERPPNLKRPEDYEAVFVGNIDDHFRIGVAILQRSIRLYAPFYSSDILIASPLGLRTILGGEGEKKRDFDFLSSIELLIIDQADIYLMQNWEHVLHLMNHMNLLPLDSHGVDFSRVRMWSLNNWSKYYRQTLLFGALQDAQINSVFNKYCVNAQGQVAVRNVPVTGSISHVLVQLPHVFQRMEAQDLASVIDARFAFFVNKVLPQYRDAVMSHTLLYVPSYFDFVRLRNYFKKEELSFTHICEYTQRPAVSRARHFFRQGEKQFLLLTERFHFYKRYTIKGIRNLIFYELPTYPHFYSEVCNMLRATTSGEEAAWTCTVLYSKYDAQRLAAVVGVERAAQMLRSEKSVHLFITGER", "length": 760, "header": "tr|F1SF51-1|F1SF51_PIG Isoform 1 of U3 small nucleolar RNA-associated protein 25 homolog OS=Sus scrofa OX=9823 GN=UTP25 PE=3 SV=3 CANONICAL=F1SF51-1" }, "locus": { "chromosome": "9", "start_pos": 133141149, "end_pos": 133115698, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017005.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017005.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016551.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016551.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "protein localization to nucleolus", "id": "GO:1902570", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902570", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "pmid": "" }, { "name": "protein catabolic process", "id": "GO:0030163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030163", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "pmid": "" }, { "name": "protein destabilization", "id": "GO:0031648", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031648", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "pmid": "" }, { "name": "embryonic organ development", "id": "GO:0048568", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048568", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "pmid": "" }, { "name": "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000462", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "pmid": "" }, { "name": "U3 snoRNA binding", "id": "GO:0034511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034511", "evidence": [ { "database": "UniProtKB", "id": "F1SF51", "url": "https://www.uniprot.org/uniprotkb/F1SF51" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 332, "end_pos": 334, "annotation": "n_glycosylation_sequon" }, { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SF51-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 760, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SF51-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SF51" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SF51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF51" }, { "id": "PF06862", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06862" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UTP25 C-terminal", "eco_id": "ECO_0000259", "start_pos": 571, "end_pos": 755, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SF51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF51" }, { "id": "PF22916", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22916" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UTP25 NTP hydrolase-like", "eco_id": "ECO_0000259", "start_pos": 293, "end_pos": 561, "start_aa": "Tyr", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 188, "end_pos": 190 }, { "start_pos": 332, "end_pos": 334 }, { "start_pos": 527, "end_pos": 529 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFA7-1", "uniprot_ac": "F1SFA7", "uniprot_id": "F1SFA7_PIG", "mass": { "chemical_mass": 129088.0, "monoisotopic_mass": 129088.0 }, "refseq": {}, "gene_names": [ { "name": "COL1A2", "type": "recommended", "evidence": [ { "id": "F1SFA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ] } ], "protein_names": [ { "name": "Collagen type I alpha 2 chain", "type": "synonym", "evidence": [ { "id": "F1SFA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFA7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Type I collagen is a member of group I collagen (fibrillar forming collagen).", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7#function" }, { "database": "UniProtKB", "id": "ARBA00003647", "url": "https://www.uniprot.org/uniprotkb/ARBA00003647#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL1A2", "url": "https://www.uniprot.org/uniprotkb/F1SFA7", "locus": { "chromosome": "9", "start_pos": 74210397, "end_pos": 74173931, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015326", "url": "https://www.ensembl.org/id/ENSSSCG00000015326" } ] } } ], "crossref": [ { "id": "F1SFA7", "url": "https://alphafold.ebi.ac.uk/entry/F1SFA7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015326", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015326", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1097", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1097", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF568", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF568", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01410", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01410", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FM91", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM91-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8X9AEL6", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8X9AEL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8X9AEL6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFA7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFA7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSFVDTRTLLLLAVTSCLATCQSLQEATARKGPTGDRGPRGERGPPGPPGRDGDDGIPGPPGPPGPPGPPGLGGNFAAQYDGKGVGAGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGNDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGVSGPVGPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPAGAAGATGARGLVGEPGPAGSKGESGNKGEPGAAGPQGPPGPSGEEGKRGPNGEVGSAGPPGPPGLRGNPGSRGLPGADGRAGVMGPPGSRGPTGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNVGPAGKEGPAGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGEKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGIPGEFGLPGPAGPRGERGPPGESGAAGPAGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGPSGLPGERGAAGIPGGKGEKGETGLRGDVGSPGRDGARGAPGAVGAPGPAGANGDRGEAGPAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGATGFPGAAGRIGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGETGASGPPGFAGEKGPSGEPGTAGPPGTPGPQGILGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGAVGNPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERGYPGNPGPAGAAGAPGPQGAVGPAGKHGNRGEPGPAGSVGPAGAVGPRGPSGPQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGPVGPAGPRGPAGPSGPAGKDGRTGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCFK", "length": 1365, "header": "tr|F1SFA7-1|F1SFA7_PIG Isoform 1 of Collagen type I alpha 2 chain OS=Sus scrofa OX=9823 GN=COL1A2 PE=3 SV=3 CANONICAL=F1SFA7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FM91-1", "url": "https://www.uniprot.org/uniprotkb/F1SFA7/entry#A0A8W4FM91-1", "sequence": { "sequence": "MLSFVDTRTLLLLAVTSCLATCQCKCLQLATARKGPTGDRGPRGERGPPGPPGRDGDDGIPGPPGPPGPPGPPGLGGNFAAQYDGKGVGAGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGNDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGVSGPVGPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPAGAAGATGARGLVGEPGPAGSKGESGNKGEPGAAGPQGPPGPSGEEGKRGPNGEVGSAGPPGPPGLRGNPGSRGLPGADGRAGVMGPPGSRGPTGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNVGPAGKEGPAGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGEKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGIPGEFGLPGPAGPRGERGPPGESGAAGPAGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGPSGLPGERGAAGIPGGKGEKGETGLRGDVGSPGRDGARGAPGAVGAPGPAGANGDRGEAGPAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGATGFPGAAGRIGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGETGASGPPGFAGEKGPSGEPGTAGPPGTPGPQGILGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGAVGNPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERGYPGNPGPAGAAGAPGPQGAVGPAGKHGNRGEPGPAGSVGPAGAVGPRGPSGPQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGPVGPAGPRGPAGPSGPAGKDGRTGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCFK", "length": 1367, "header": "tr|A0A8W4FM91-1|F1SFA7_PIG Computationally mapped isoform of Collagen type I alpha 2 chain OS=Sus scrofa OX=9823 GN=COL1A2 PE=3 SV=1 CANONICAL=F1SFA7-1" }, "locus": { "chromosome": "9", "start_pos": 74209558, "end_pos": 74174625, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093157.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093157.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080018.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080018.1" } ] } }, { "isoform_ac": "A0A8X9AEL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFA7/entry#A0A8X9AEL6-1", "sequence": { "sequence": "MLSFVDTRTLLLLAVTSCLATCQFLATARKGPTGDRGPRGERGPPGPPGRDGDDGIPGPPGPPGPPGPPGLGGNFAAQYDGKGVGAGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGNDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGVSGPVGPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPAGAAGATGARGLVGEPGPAGSKGESGNKGEPGAAGPQGPPGPSGEEGKRGPNGEVGSAGPPGPPGLRGNPGSRGLPGADGRAGVMGPPGSRGPTGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNVGPAGKEGPAGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGEKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGIPGEFGLPGPAGPRGERGPPGESGAAGPAGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGPSGLPGERGAAGIPGGKGEKGETGLRGDVGSPGRDGARGAPGAVGAPGPAGANGDRGEAGPAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGATGFPGAAGRIGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGETGASGPPGFAGEKGPSGEPGTAGPPGTPGPQGILGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGAVGNPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERGYPGNPGPAGAAGAPGPQGAVGPAGKHGNRGEPGPAGSVGPAGAVGPRGPSGPQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGPVGPAGPRGPAGPSGPAGKDGRTGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCFK", "length": 1363, "header": "tr|A0A8X9AEL6-1|F1SFA7_PIG Computationally mapped isoform of Collagen type I alpha 2 chain OS=Sus scrofa OX=9823 GN=COL1A2 PE=3 SV=1 CANONICAL=F1SFA7-1" }, "locus": { "chromosome": "9", "start_pos": 74209558, "end_pos": 74174625, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024528.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024528.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019885.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019885.4" } ] } }, { "isoform_ac": "F1SFA7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFA7/entry#F1SFA7-1", "sequence": { "sequence": "MLSFVDTRTLLLLAVTSCLATCQSLQEATARKGPTGDRGPRGERGPPGPPGRDGDDGIPGPPGPPGPPGPPGLGGNFAAQYDGKGVGAGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGNDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGVSGPVGPPGNPGANGLPGAKGAAGLPGVAGAPGLPGPRGIPGPAGAAGATGARGLVGEPGPAGSKGESGNKGEPGAAGPQGPPGPSGEEGKRGPNGEVGSAGPPGPPGLRGNPGSRGLPGADGRAGVMGPPGSRGPTGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNVGPAGKEGPAGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGEKGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPAGPPGFQGLPGPAGTAGEVGKPGERGIPGEFGLPGPAGPRGERGPPGESGAAGPAGPIGSRGPSGPPGPDGNKGEPGVLGAPGTAGPSGPSGLPGERGAAGIPGGKGEKGETGLRGDVGSPGRDGARGAPGAVGAPGPAGANGDRGEAGPAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGTKGPKGENGPVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGATGFPGAAGRIGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGETGASGPPGFAGEKGPSGEPGTAGPPGTPGPQGILGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGAVGNPGVNGAPGEAGRDGNPGSDGPPGRDGQAGHKGERGYPGNPGPAGAAGAPGPQGAVGPAGKHGNRGEPGPAGSVGPAGAVGPRGPSGPQGIRGEKGEPGDKGPRGLPGLKGHNGLQGLPGLAGHHGDQGAPGPVGPAGPRGPAGPSGPAGKDGRTGQPGAVGPAGIRGSQGSQGPAGPPGPPGPPGPPGPSGGGYDFGYEGDFYRADQPRSPPSLRPKDYEVDATLKSLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSTGETCIRQPENIPAKNWYRNSKVKKHVWLGETINGGTQFEYNMEGVTTKEMATQLAFMRLLANHASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKTNEWRKTIIEYKTNKPSRLPILDIAPLDIGDADQEVSVDVGPVCFK", "length": 1365, "header": "tr|F1SFA7-1|F1SFA7_PIG Isoform 1 of Collagen type I alpha 2 chain OS=Sus scrofa OX=9823 GN=COL1A2 PE=3 SV=3 CANONICAL=F1SFA7-1" }, "locus": { "chromosome": "9", "start_pos": 74209558, "end_pos": 74174625, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016699.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016699.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016253.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016253.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 170, "start_aa": "Thr", "end_pos": 170, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr170", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 426, "start_aa": "Thr", "end_pos": 426, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr426", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 501, "start_aa": "Thr", "end_pos": 501, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr501", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 756, "start_aa": "Thr", "end_pos": 756, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr756", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 860, "start_aa": "Thr", "end_pos": 860, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr860", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM91", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "protease binding", "id": "GO:0002020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002020", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "SMAD binding", "id": "GO:0046332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046332", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "extracellular matrix structural constituent", "id": "GO:0005201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005201", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "platelet-derived growth factor binding", "id": "GO:0048407", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048407", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "extracellular matrix structural constituent conferring tensile strength", "id": "GO:0030020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030020", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "collagen type I trimer", "id": "GO:0005584", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005584", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "regulation of blood pressure", "id": "GO:0008217", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008217", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "transforming growth factor beta receptor signaling pathway", "id": "GO:0007179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007179", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "skeletal system development", "id": "GO:0001501", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001501", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "Rho protein signal transduction", "id": "GO:0007266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007266", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "collagen fibril organization", "id": "GO:0030199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030199", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "blood vessel development", "id": "GO:0001568", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001568", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "skin morphogenesis", "id": "GO:0043589", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043589", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" }, { "name": "skin development", "id": "GO:0043588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043588", "evidence": [ { "database": "UniProtKB", "id": "F1SFA7", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1266, "end_pos": 1268, "annotation": "n_glycosylation_sequon" }, { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFA7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1365, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFA7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFA7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFA7" }, { "id": "PS51461", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51461" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrillar collagen NC1", "eco_id": "ECO_0000259", "start_pos": 1133, "end_pos": 1365, "start_aa": "Tyr", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 170, 426, 501, 756, 860 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1266, "end_pos": 1268 }, { "start_pos": 207, "end_pos": 209 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLE5-1", "uniprot_ac": "F1SLE5", "uniprot_id": "F1SLE5_PIG", "mass": { "chemical_mass": 44175.0, "monoisotopic_mass": 44175.0 }, "refseq": {}, "gene_names": [ { "name": "ATP6V1B1", "type": "recommended", "evidence": [ { "id": "F1SLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ] } ], "protein_names": [ { "name": "Vacuolar proton pump subunit B", "type": "recommended", "evidence": [ { "id": "F1SLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLE5/entry#names_and_taxonomy" } ] }, { "name": "V-ATPase subunit B", "type": "synonym", "evidence": [ { "id": "F1SLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLE5/entry#names_and_taxonomy" } ] }, { "name": "Vacuolar proton pump subunit B", "type": "synonym", "evidence": [ { "id": "F1SLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLE5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Non-catalytic subunit of the V1 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons. V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it is responsible for acidifying the extracellular environment.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMK1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMK1#function" }, { "database": "UniProtKB", "id": "RU366021", "url": "https://www.uniprot.org/uniprotkb/RU366021#function" }, { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATP6V1B1", "url": "https://www.uniprot.org/uniprotkb/F1SLE5", "locus": { "chromosome": "3", "start_pos": 71561236, "end_pos": 71591845, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008314", "url": "https://www.ensembl.org/id/ENSSSCG00000008314" } ] } } ], "crossref": [ { "id": "F1SLE5", "url": "https://alphafold.ebi.ac.uk/entry/F1SLE5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008314", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008314", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01135", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01135", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18112", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18112", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18118", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18118", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MLIEHSE", "url": "https://omabrowser.org/oma/group/MLIEHSE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR43389", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43389", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43389:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43389:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00006", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00006", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22919", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22919", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1222556", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1222556", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-77387", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77387", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-917977", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-917977", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9639288", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9639288", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983712", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983712", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FMK1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLE5-1", "url": "https://www.uniprot.org/uniprotkb/F1SLE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGRVFNGSGKPIDNGPVVMAEDFLDINGQPINPHDRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYDDDNFAIVFAAMGVNMETARFFKSDFEENGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQKFERNFINQGPYEKRSVFESLDLGWKLLRIFPKEMLKRIPQSMIDEFYSREGAPQDPEPEPDTAL", "length": 395, "header": "tr|F1SLE5-1|F1SLE5_PIG Isoform 1 of Vacuolar proton pump subunit B OS=Sus scrofa OX=9823 GN=ATP6V1B1 PE=1 SV=3 CANONICAL=F1SLE5-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FMK1-1", "url": "https://www.uniprot.org/uniprotkb/F1SLE5/entry#A0A8W4FMK1-1", "sequence": { "sequence": "MTALEAYGAATYTTTVAVLAALPSCQFAQYAEIVNFTLPNGTQRSGQVLEVSGTKAIVFEGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDNGPVVMAEDFLDINGQPINPHDRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYDDDNFAIVFAAMGVNMETARFFKSDFEENGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQKFERNFINQGPYEKRSVFESLDLGWKLLRIFPKEMLKRIPQSMIDEFYSREGTELAKH", "length": 474, "header": "tr|A0A8W4FMK1-1|F1SLE5_PIG Computationally mapped isoform of Vacuolar proton pump subunit B OS=Sus scrofa OX=9823 GN=ATP6V1B1 PE=1 SV=1 CANONICAL=F1SLE5-1" }, "locus": { "chromosome": "3", "start_pos": 71569368, "end_pos": 71561304, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092797.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092797.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080417.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080417.1" } ] } }, { "isoform_ac": "F1SLE5-1", "url": "https://www.uniprot.org/uniprotkb/F1SLE5/entry#F1SLE5-1", "sequence": { "sequence": "MLGRVFNGSGKPIDNGPVVMAEDFLDINGQPINPHDRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKAVLDYDDDNFAIVFAAMGVNMETARFFKSDFEENGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQKFERNFINQGPYEKRSVFESLDLGWKLLRIFPKEMLKRIPQSMIDEFYSREGAPQDPEPEPDTAL", "length": 395, "header": "tr|F1SLE5-1|F1SLE5_PIG Isoform 1 of Vacuolar proton pump subunit B OS=Sus scrofa OX=9823 GN=ATP6V1B1 PE=1 SV=3 CANONICAL=F1SLE5-1" }, "locus": { "chromosome": "3", "start_pos": 71567905, "end_pos": 71561620, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009105.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009105.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008876.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008876.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FMK1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMK1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1222556", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1222556", "resource": "Reactome", "description": "ROS and RNS production in phagocytes" }, { "id": "R-SSC-77387", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77387", "resource": "Reactome", "description": "Insulin receptor recycling" }, { "id": "R-SSC-917977", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-917977", "resource": "Reactome", "description": "Transferrin endocytosis and recycling" }, { "id": "R-SSC-9639288", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9639288", "resource": "Reactome", "description": "Amino acids regulate mTORC1" }, { "id": "R-SSC-983712", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983712", "resource": "Reactome", "description": "Ion channel transport" } ], "orthologs": [ { "uniprot_canonical_ac": "P11574-1", "protein_name": "V-type proton ATPase subunit B1", "gene_name": "VHA-B1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGTNDLDIEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTVDLLEDHGEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVMQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRDSTS", "length": 486 }, "evidence": [ { "id": "F1SLE5", "url": "https://omabrowser.org/oma/group/F1SLE5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "proton-transporting ATPase activity, rotational mechanism", "id": "GO:0046961", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046961", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "lateral plasma membrane", "id": "GO:0016328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016328", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "microvillus", "id": "GO:0005902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005902", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "vacuolar proton-transporting V-type ATPase, V1 domain", "id": "GO:0000221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000221", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "proton-transporting V-type ATPase, V1 domain", "id": "GO:0033180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033180", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "inner ear morphogenesis", "id": "GO:0042472", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042472", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "vacuolar proton-transporting V-type ATPase complex assembly", "id": "GO:0070072", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070072", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "ossification", "id": "GO:0001503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001503", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "calcium ion homeostasis", "id": "GO:0055074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055074", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "ATP metabolic process", "id": "GO:0046034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046034", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "renal tubular secretion", "id": "GO:0097254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097254", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "pH reduction", "id": "GO:0045851", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045851", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "synaptic vesicle lumen acidification", "id": "GO:0097401", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097401", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "vacuolar acidification", "id": "GO:0007035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007035", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" }, { "name": "proton transmembrane transport", "id": "GO:1902600", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902600", "evidence": [ { "database": "UniProtKB", "id": "F1SLE5", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLE5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 395, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLE5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLE5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" }, { "id": "PF22919", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22919" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ATP synthase A/B type C-terminal", "eco_id": "ECO_0000259", "start_pos": 279, "end_pos": 378, "start_aa": "Ala", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SLE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLE5" }, { "id": "PF00006", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00006" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ATPase F1/V1/A1 complex alpha/beta subunit nucleotide-binding", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 273, "start_aa": "Gly", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM42-1", "uniprot_ac": "F1SM42", "uniprot_id": "F1SM42_PIG", "mass": { "chemical_mass": 68227.0, "monoisotopic_mass": 68227.0 }, "refseq": {}, "gene_names": [ { "name": "ATG16L1", "type": "recommended", "evidence": [ { "id": "F1SM42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ] } ], "protein_names": [ { "name": "Autophagy related 16 like 1", "type": "synonym", "evidence": [ { "id": "F1SM42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM42/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATG16L1", "url": "https://www.uniprot.org/uniprotkb/F1SM42", "locus": { "chromosome": "15", "start_pos": 133693468, "end_pos": 133651298, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016300", "url": "https://www.ensembl.org/id/ENSSSCG00000016300" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016300", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016300", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22887", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22887", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100462746", "url": "https://www.ncbi.nlm.nih.gov/gene/100462746", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013923", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013923", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WGRPCIS", "url": "https://omabrowser.org/oma/group/WGRPCIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3LSJ0", "url": "https://www.orthodb.org/?gene=I3LSJ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19878", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19878", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19878:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19878:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08614", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08614", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1632852", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A5J3", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5J3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5J3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BG82", "url": "https://www.uniprot.org/uniprotkb/A0A287BG82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BG82-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BG82-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM42-1", "url": "https://www.uniprot.org/uniprotkb/F1SM42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LSJ0", "url": "https://www.uniprot.org/uniprotkb/I3LSJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LSJ0-1", "url": "https://www.uniprot.org/uniprotkb/I3LSJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEKHDIPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQRDKEMQVNEAKIAECLQTISDLETECLELRTKLQDLERANQTLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDIEVLADDTSDHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSFSSVPAPQDNVDTHPGSSKEVRVPVTAVCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSPSGAHVASVDKGSKAVLWSDY", "length": 607, "header": "tr|F1SM42-1|F1SM42_PIG Isoform 1 of Autophagy related 16 like 1 OS=Sus scrofa OX=9823 GN=ATG16L1 PE=3 SV=3 CANONICAL=F1SM42-1" }, "isoforms": [ { "isoform_ac": "A0A287A5J3-1", "url": "https://www.uniprot.org/uniprotkb/F1SM42/entry#A0A287A5J3-1", "sequence": { "sequence": "MSSSLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEKHDIPNRHEIRRRQARLQKELAEAAKEPLPVEQDDDIEVLADDTSDHPEETSPVRAISRAATRRSFSSVPAPQDNVDTHPGSSKEVRVPVTAVCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSPSGAHVASVDKGSKAVLWSDY", "length": 444, "header": "tr|A0A287A5J3-1|F1SM42_PIG Computationally mapped isoform of Autophagy related 16 like 1 OS=Sus scrofa OX=9823 GN=ATG16L1 PE=3 SV=2 CANONICAL=F1SM42-1" }, "locus": { "chromosome": "15", "start_pos": 133691763, "end_pos": 133651464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056639.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056639.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039214.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039214.2" } ] } }, { "isoform_ac": "A0A287BG82-1", "url": "https://www.uniprot.org/uniprotkb/F1SM42/entry#A0A287BG82-1", "sequence": { "sequence": "MSSSLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEKHDIPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQRDKEMQVNEAKIAECLQTISDLETECLELRTKLQDLERANQTLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDIEVLADDTSDHPEETSPVRAISRAATRRSFSSVPAPQDNVDTHPGSSKEVRVPVTAVCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSPSGAHVASVDKGSKAVLWSDY", "length": 588, "header": "tr|A0A287BG82-1|F1SM42_PIG Computationally mapped isoform of Autophagy related 16 like 1 OS=Sus scrofa OX=9823 GN=ATG16L1 PE=3 SV=2 CANONICAL=F1SM42-1" }, "locus": { "chromosome": "15", "start_pos": 133691763, "end_pos": 133651464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039133.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039133.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055057.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055057.2" } ] } }, { "isoform_ac": "F1SM42-1", "url": "https://www.uniprot.org/uniprotkb/F1SM42/entry#F1SM42-1", "sequence": { "sequence": "MSSSLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEKHDIPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQRDKEMQVNEAKIAECLQTISDLETECLELRTKLQDLERANQTLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDIEVLADDTSDHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSFSSVPAPQDNVDTHPGSSKEVRVPVTAVCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSPSGAHVASVDKGSKAVLWSDY", "length": 607, "header": "tr|F1SM42-1|F1SM42_PIG Isoform 1 of Autophagy related 16 like 1 OS=Sus scrofa OX=9823 GN=ATG16L1 PE=3 SV=3 CANONICAL=F1SM42-1" }, "locus": { "chromosome": "15", "start_pos": 133691763, "end_pos": 133651464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017750.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017750.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017269.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017269.3" } ] } }, { "isoform_ac": "I3LSJ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SM42/entry#I3LSJ0-1", "sequence": { "sequence": "MSSSLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEKHDIPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQRDKEMQVNEAKIAECLQTISDLETECLELRTKLQDLERANQTLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDIEVLADDTSDHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSDAARRRSFSSVPAPQDNVDTHPGSSKEVRVPVTAVCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLSGKVEKVLSKHHSSPINAVAWSPSGAHVASVDKGSKAVLWSDY", "length": 623, "header": "tr|I3LSJ0-1|F1SM42_PIG Computationally mapped isoform of Autophagy related 16 like 1 OS=Sus scrofa OX=9823 GN=ATG16L1 PE=3 SV=4 CANONICAL=F1SM42-1" }, "locus": { "chromosome": "15", "start_pos": 133691763, "end_pos": 133651464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028201.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028201.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027083.4", "url": "https://www.ensembl.org/id/ENSSSCP00000027083.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LSJ0", "url": "https://www.uniprot.org/uniprotkb/I3LSJ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1632852", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "resource": "Reactome", "description": "Macroautophagy" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M3D1-1", "protein_name": "Autophagy related 16 like 1", "gene_name": "ATG16L1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSGLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEKHDVPNRHEISPGHDGSWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQKDKEMQMNEAKIAEYLQTISDLETECQELRTKLQDLERANQTLKDEYDALQITFTALEEKLRKTSEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDIEVLVDETSEHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDPHPGAGKEVRVPTTAMSVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGDKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQTFSAPGFKCGSDWTRAVFSPDGSYVAAGAAEGSLYIWNVLSGKVEKVLSKHHSSSINAVAWSPAGSHVVTVDKGSKAVLWSEY", "length": 607 }, "evidence": [ { "id": "F1SM42", "url": "https://omabrowser.org/oma/group/F1SM42/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0ZST4-1", "protein_name": "Autophagy related 16 like 2", "gene_name": "ATG16L2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASGLHAAGFPPWKRHIAAELRRRDRLQRQAFEEIVAQYNKLLEKSDLHAVLADKLQAEKYDMQSRHEISPGHDGTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQKDKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKLRKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPRDDDIEVLADETSDTAEETSPVRAVSRTPSKRLSQPAGGLLDSITNIFGRRSLSSFPPPQDNAEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVLFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRTESIVKELELLGRITALDLNSERTELLTCSRDDLLKIIDLRVGAVKQTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYVWNVLTGKLERTLAKHHSSPINAVAWSPAGAHVVSVDKGNKAVLWSEF", "length": 604 }, "evidence": [ { "id": "F1SM42", "url": "https://omabrowser.org/oma/group/F1SM42/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B7Z0R7-1", "protein_name": "Autophagy-related 16, isoform F", "gene_name": "Atg16", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSTEEHVWRAHVVRRLRERNRKECDNFKEIIEQNNRLIDHVAQLKADNLKISVENEQLRNAVSTGGTGSNVAIATLEKKLLSQQEELTELHKRKGENSQMIVDLNQKVEQQRIIISEKEHSLVEQQTNNNRLRAEVQLLHSSLEELKKLNNTMLDEHTALQLAFSSLEEKLRGVQDENRRLLERLMQYKSKDADKLNEENESIIRKRLPSIFRKRSAKLKRDLEDAVREPSSSSNAASSPGAASLQRNSSPAQFVGGLIGDEDFDEAAINGAMEAIGLDDNEYISARFTAGEIAENSRASIDTLKATGYLGQANPTKILMKFEAHENESHAVRWSPVERMVATGGADRKVKLWDIGKNSTEPRAVLSGSSAGINSVDFDSTGAYILGTSNDYGARVWTVMDNRLRHTLTGHSGKVMAAKYVQEPIKVVTGSHDRTLKIWDLRSIACIETKFAGSSCNDLVTTDSLGSTIISGHYDKKIRFWDIRTEKQADDVLMPAKITSLDLSKDCNYLICSVRDDTIKLLDLRKNQVISTFTNEHFKISCDFARASFNSSGLKIACGSADGAIYIWNVNGFLEATLKGHSTAVNAVSWSPNNNMLASVGKNKRCTIYSES", "length": 612 }, "evidence": [ { "id": "F1SM42", "url": "https://omabrowser.org/oma/group/F1SM42/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "D3ZFK6-1", "protein_name": "Autophagy-related protein 16-1", "gene_name": "Atg16l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEKHDVPNRHEISPGHDGAWNDSQLQEMAQLKMKHQEELTELHKKRGELAQLVIDLNNQMQQKDKEIQTNEAKIAECLQTISDLEADCLDLRTKLQDLEVANQTLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSVSSIPVPQDVVDTHPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRTNAIKQSFSAPGFKCGSDWTRVVFSPDGSYVAAGSADGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSRAVLWAQP", "length": 607 }, "evidence": [ { "id": "F1SM42", "url": "https://omabrowser.org/oma/group/F1SM42/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O15736-1", "protein_name": "Protein tipD", "gene_name": "tipD", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSSQNNSYMMMMGGGGIGNINNNQFYSPIISTSAQSFNSIVEWKRDIIRQLNDRNQNQTNNYSEFMRIYTDLLKRERTLNDRTLLYEKEIVSLRNEKKTQQQPPSGSSKMDSSSSSSSSNRVSGMGSTIEEMEQKLFKLQEDLTNSYKRNADNASSILLLNDKNKDLQNELMSKEIEIERIRSTIQQDLDSIKRLEMVVIEKENVSQIIRDELSSLQTEFLHNESKVVKLEQENSSLVERWLRKKNEEASKMNEANDFYQKMVEQRDSTPAKAAVQLSESISNLVVKLPDANDVPIPIVLERGVFSSEAMLPSKAKKRWTGHNSEIYCMAFNSIGNLLATGGGDKCVKVWDVISGQQKSTLLGASQSIVSVSFSPNDESILGTSNDNSARLWNTELGRSRHTLTGHIGKVYTGKFINSNRVVTGSHDRTIKLWDLQKGYCTRTIFCFSSCNDLVILGGSGTHLASGHVDHSVRFWDSNAGEPTQVLSSIHEGQITSITNSPTNTNQILTNSRDHTLKIIDIRTFDTIRTFKDPEYRNGLNWTKASWSPDGRYIASGSIDGSICIWDATNGKTVKVLTKVHNNGSSVCCCSWSPLANIFISADKDKNIIQWE", "length": 612 }, "evidence": [ { "id": "F1SM42", "url": "https://omabrowser.org/oma/group/F1SM42/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q676U5-1", "protein_name": "Autophagy-related protein 16-1", "gene_name": "ATG16L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSGLRAADFPRWKRHISEQLRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAQKLQAEKHDVPNRHEISPGHDGTWNDNQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQRKDREMQMNEAKIAECLQTISDLETECLDLRTKLCDLERANQTLKDEYDALQITFTALEGKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAATKRLSQPAGGLLDSITNIFGRRSVSSFPVPQDNVDTHPGSGKEVRVPATALCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEVFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINAVAWSPSGSHVVSVDKGCKAVLWAQY", "length": 607 }, "evidence": [ { "id": "F1SM42", "url": "https://omabrowser.org/oma/group/F1SM42/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NNP0-1", "protein_name": "Autophagy-related protein 16", "gene_name": "ATG16", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVQEEKAMEAINDALRALRKRHLLEEGAHAPAISALSKPLISQGSEWKEKTEKLETELQQCYKAQSRLSEQLVIEVAESRTSKAILQEKELLINDLQKELTQRREDCTRLQEELEEKTKTVDVLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWMLQKMQDAERLNEANDLYEEMLAKLKANGLETLARQQVDGIVRRNEDGTDHFVESTIPSTCANRIHAHEGGCGSIVFEYNSGTLFTGGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCTNTVLFTSNCNAICLSIDGLTVFSGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVFDTRTLEICGTLRASGNRLASNWSRSCISPDDDYVAAGSADGSVHVWSLSKGNIVSILKEQTSPILCCSWSGIGKPLASADKNGYVCTWT", "length": 509 }, "evidence": [ { "id": "F1SM42", "url": "https://omabrowser.org/oma/group/F1SM42/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8C0J2-1", "protein_name": "Autophagy-related protein 16-1", "gene_name": "Atg16l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEKHDMPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQKDKEIQMNEAKISEYLQTISDLETNCLDLRTKLQDLEVANQTLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAVSRAATKRLSQPAGGLLDSITNIFGRRSVSSIPVPQDIMDTHPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSESVVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSRAVLWAQP", "length": 607 }, "evidence": [ { "id": "F1SM42", "url": "https://omabrowser.org/oma/group/F1SM42/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 10, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "autophagosome membrane", "id": "GO:0000421", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000421", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "phagophore assembly site membrane", "id": "GO:0034045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034045", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "endolysosome membrane", "id": "GO:0036020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036020", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "Atg12-Atg5-Atg16 complex", "id": "GO:0034274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034274", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "vacuole-isolation membrane contact site", "id": "GO:0120095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120095", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "GTPase binding", "id": "GO:0051020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051020", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "protein-membrane adaptor activity", "id": "GO:0043495", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043495", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "positive regulation of autophagy", "id": "GO:0010508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010508", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "protein localization to phagophore assembly site", "id": "GO:0034497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034497", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "axonal transport", "id": "GO:0098930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098930", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "microautophagy", "id": "GO:0016237", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016237", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" }, { "name": "autophagosome assembly", "id": "GO:0000045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000045", "evidence": [ { "database": "UniProtKB", "id": "F1SM42", "url": "https://www.uniprot.org/uniprotkb/F1SM42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SM42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM42" }, { "id": "PF08614", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08614" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Autophagy-related protein 16", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 206, "start_aa": "His", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG81-1", "uniprot_ac": "F1SG81", "uniprot_id": "F1SG81_PIG", "mass": { "chemical_mass": 70283.0, "monoisotopic_mass": 70283.0 }, "refseq": { "ac": "XP_020947810", "name": "aryl hydrocarbon receptor nuclear translocator-like protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947810" }, "gene_names": [ { "name": "ARNTL2", "type": "recommended", "evidence": [ { "id": "F1SG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ] }, { "name": "ARNTL2", "type": "synonym", "evidence": [ { "id": "XP_020947810", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947810" } ] }, { "name": "BMAL2", "type": "synonym", "evidence": [ { "id": "F1SG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ] } ], "protein_names": [ { "name": "Aryl hydrocarbon receptor nuclear translocator like 2", "type": "synonym", "evidence": [ { "id": "F1SG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG81/entry#names_and_taxonomy" } ] }, { "name": "aryl hydrocarbon receptor nuclear translocator-like protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020947810", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947810" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARNTL2", "url": "https://www.uniprot.org/uniprotkb/F1SG81", "locus": {} } ], "crossref": [ { "id": "F1SG81", "url": "https://alphafold.ebi.ac.uk/entry/F1SG81", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000551", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000551", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00130", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00130", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100625791", "url": "https://www.ncbi.nlm.nih.gov/gene/100625791", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013767", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013767", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625791", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625791", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SG81", "url": "https://www.orthodb.org/?gene=F1SG81", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23042", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23042", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00989", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00989", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020947810", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947810", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZKU2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZKU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG81-1", "url": "https://www.uniprot.org/uniprotkb/F1SG81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEKEAAAAARGKLLIEENQCISSMVSSHLNPWTKPTAIGSFRPHVTEFPRKRKGSDSDPSQEAHSQTEKRRRDKMNNLIETLSAMIPQCHPVARKLDKLTVLRMAVQHLRSLKGMANSYMGNNCRPSFIQDNELRHLILKTAEGFLFVVGCERGKIIFISKSVSKILNYDQASLTGQSLFDFLHPKDVAKVKEQLSSSDISPREKLMDAKTGLQVHSNFHTERSRVYSGSRRSFFCRMKSCKISVKEEHECLSNSKKKDYRKFCTVHCTGYLRSWPPNIVGMEEERDAKKDSRNFTCLVAIGRLHPYIVPQNSGEIQVKPTEFITRFAMNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHSNLTNKHKAVLQSKEKIFTDSYKFRAKDGSFVTLKSQWFSFTNPWTKELEYIVSVNTLVLGHGETGKAPLLSCSCQSSEGSSRQSCINVPGMSMGTVLGAGSIGTDIASELLDLQRLQSSSSPDDSSPTDLLKDTHTINCRNMSSKELTTLSHSEIGEQEATKQNQSAVVPHSHEPLLEPSSLFYRGPQQPLPLRTSTPCHGEGLHNVHQHWIPAACYMEDPGSFKAQDCKICAVKSVVLEFCLTPASQSVSAQSPFFLGSP", "length": 629, "header": "tr|F1SG81-1|F1SG81_PIG Isoform 1 of Aryl hydrocarbon receptor nuclear translocator like 2 OS=Sus scrofa OX=9823 GN=ARNTL2 PE=4 SV=5 CANONICAL=F1SG81-1" }, "isoforms": [ { "isoform_ac": "A0A286ZKU2-1", "url": "https://www.uniprot.org/uniprotkb/F1SG81/entry#A0A286ZKU2-1", "sequence": { "sequence": "MAAEKEAAAAARGKLLIEENQCISSMVSSHLNPWTKPTAIGSFRPHVTEFPRKRKGSDSDPSQEAHSQTEKRRRDKMNNLIETLSAMIPQCHPVARKLDKLTVLRMAVQHLRSLKGMANSYMGNNCRPSFIQDNELRHLILKTAEGFLFVVGCERGKIIFISKSVSKILNYDQASLTGQSLFDFLHPKDVAKVKEQLSSSDISPREKLMDAKTGLQVHSNFHTERSRVYSGSRRSFFCRMKSCKISVKEEHECLSNSKKKDYRKFCTVHCTGYLRSWPPNIVGMEEERDAKKDSRNFTCLVAIGRLHPYIVPQNSGEIQVKPTEFITRFAMNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHSNLTNKHKAVLQSKEKIFTDSYKFRAKDGSFVTLKSQWFSFTNPWTKELEYIVSVNTLVLGHGETGKAPLLSCSCQSSEGSSRQSCINVPGMSMGTVLGAGSIGTDIASELLDLQRLQSSSSPDDSSPTDLLKDTHTINCRNMSSKELTTLSHSEIGEQEATKQNQSAVVPHSHEPLLGEGAQLDFDALCDNDDTAMAAFMNYLEAEGGLGDPGDFSDIHWTL", "length": 590, "header": "tr|A0A286ZKU2-1|F1SG81_PIG Computationally mapped isoform of Aryl hydrocarbon receptor nuclear translocator like 2 OS=Sus scrofa OX=9823 GN=ARNTL2 PE=4 SV=2 CANONICAL=F1SG81-1" }, "locus": { "chromosome": "5", "start_pos": 46482280, "end_pos": 46355188, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056737.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056737.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032065.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032065.2" } ] } }, { "isoform_ac": "F1SG81-1", "url": "https://www.uniprot.org/uniprotkb/F1SG81/entry#F1SG81-1", "sequence": { "sequence": "MAAEKEAAAAARGKLLIEENQCISSMVSSHLNPWTKPTAIGSFRPHVTEFPRKRKGSDSDPSQEAHSQTEKRRRDKMNNLIETLSAMIPQCHPVARKLDKLTVLRMAVQHLRSLKGMANSYMGNNCRPSFIQDNELRHLILKTAEGFLFVVGCERGKIIFISKSVSKILNYDQASLTGQSLFDFLHPKDVAKVKEQLSSSDISPREKLMDAKTGLQVHSNFHTERSRVYSGSRRSFFCRMKSCKISVKEEHECLSNSKKKDYRKFCTVHCTGYLRSWPPNIVGMEEERDAKKDSRNFTCLVAIGRLHPYIVPQNSGEIQVKPTEFITRFAMNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHSNLTNKHKAVLQSKEKIFTDSYKFRAKDGSFVTLKSQWFSFTNPWTKELEYIVSVNTLVLGHGETGKAPLLSCSCQSSEGSSRQSCINVPGMSMGTVLGAGSIGTDIASELLDLQRLQSSSSPDDSSPTDLLKDTHTINCRNMSSKELTTLSHSEIGEQEATKQNQSAVVPHSHEPLLEPSSLFYRGPQQPLPLRTSTPCHGEGLHNVHQHWIPAACYMEDPGSFKAQDCKICAVKSVVLEFCLTPASQSVSAQSPFFLGSP", "length": 629, "header": "tr|F1SG81-1|F1SG81_PIG Isoform 1 of Aryl hydrocarbon receptor nuclear translocator like 2 OS=Sus scrofa OX=9823 GN=ARNTL2 PE=4 SV=5 CANONICAL=F1SG81-1" }, "locus": { "chromosome": "5", "start_pos": 46482280, "end_pos": 46290978, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000594.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000594.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000581.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000581.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZKU2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKU2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625791", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625791", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "E-box binding", "id": "GO:0070888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070888", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "aryl hydrocarbon receptor complex", "id": "GO:0034751", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034751", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "rhythmic process", "id": "GO:0048511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048511", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "circadian regulation of gene expression", "id": "GO:0032922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032922", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" }, { "name": "positive regulation of circadian rhythm", "id": "GO:0042753", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042753", "evidence": [ { "database": "UniProtKB", "id": "F1SG81", "url": "https://www.uniprot.org/uniprotkb/F1SG81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" }, { "start_pos": 532, "end_pos": 534, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG81-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 629, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG81-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG81" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG81" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 114, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SG81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG81" }, { "id": "PS50112", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50112" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PAS", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 197, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 296, "end_pos": 298 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 509, "end_pos": 511 }, { "start_pos": 532, "end_pos": 534 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM61-1", "uniprot_ac": "F1SM61", "uniprot_id": "F1SM61_PIG", "mass": { "chemical_mass": 77490.0, "monoisotopic_mass": 77490.0 }, "refseq": { "ac": "XP_003126003", "name": "fibulin-1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126003" }, "gene_names": [ { "name": "FBLN1", "type": "recommended", "evidence": [ { "id": "F1SM61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ] }, { "name": "FBLN1", "type": "synonym", "evidence": [ { "id": "XP_003126003", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126003" } ] } ], "protein_names": [ { "name": "Fibulin-1", "type": "recommended", "evidence": [ { "id": "F1SM61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM61/entry#names_and_taxonomy" } ] }, { "name": "fibulin-1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003126003", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126003" } ] } ], "function": [ { "annotation": "Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZLN2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLN2#function" }, { "database": "UniProtKB", "id": "PIRNR036313", "url": "https://www.uniprot.org/uniprotkb/PIRNR036313#function" }, { "database": "UniProtKB", "id": "A0A287AL89", "url": "https://www.uniprot.org/uniprotkb/A0A287AL89#function" }, { "database": "UniProtKB", "id": "A0A5G2R662", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R662#function" }, { "database": "UniProtKB", "id": "A0A5G2QCT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCT3#function" }, { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBLN1", "url": "https://www.uniprot.org/uniprotkb/F1SM61", "locus": { "chromosome": "5", "start_pos": 3839502, "end_pos": 3927183, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000010", "url": "https://www.ensembl.org/id/ENSSSCG00000000010" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000010", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000010", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00017", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00017", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519144", "url": "https://www.ncbi.nlm.nih.gov/gene/100519144", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026823", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026823", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052235", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519144", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519144", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RITSYHL", "url": "https://omabrowser.org/oma/group/RITSYHL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SM61", "url": "https://www.orthodb.org/?gene=F1SM61", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24050", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24050", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24050:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24050:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01821", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01821", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12662", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12662", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22914", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22914", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126003", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126003", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZLN2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AL89", "url": "https://www.uniprot.org/uniprotkb/A0A287AL89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AL89-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCT3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R662", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R662", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R662-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R662-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM61-1", "url": "https://www.uniprot.org/uniprotkb/F1SM61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERAAPSRRVPLPLLLLGGLSLLAAPAGAEVPMEACCTDGHQMATQHKDCSLPYTSESKECRMVQEQCCQNQLEELHCAAGISLADEGDSCAAPQGDNASLEAMIVKRCCHCCLLGRAAQAQGQSCEYNLMVGYQCGLVFRACCVKGQENADFAPGDIGDLQETAKVSEIEEEQEDPYLNDRCRGGGPCKQQCRDTGQEVVCSCFVGYQLLPDGVSCEDINECIKGSQNCRLGETCINTVGSFRCQRDSSCGTGYELTEDNDCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPAEPCGPGHMCVNSLGSFRCECKAGYYFDGISRTCVDINECRRYPGRLCGHKCENTPGSYYCSCTIGFRLSSDGRSCEDVNECHSSPCSQECANVYGSYQCYCRRGYQLSDVDGTTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSTGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGSFRCLAFECPENYRRSADTLRQEKTDTIRCIKSCRPNDVTCVLAPVHTISHTVVSLPTFREFTRPEEIIFLRAVTPAHPANHADIIFDITDGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEYWF", "length": 706, "header": "tr|F1SM61-1|F1SM61_PIG Isoform 1 of Fibulin-1 OS=Sus scrofa OX=9823 GN=FBLN1 PE=1 SV=2 CANONICAL=F1SM61-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLN2-1", "url": "https://www.uniprot.org/uniprotkb/F1SM61/entry#A0A286ZLN2-1", "sequence": { "sequence": "MAPVFLALCTAKAETPSGQVPLRVAGVWLEQGFPAAELQPRQQWIQQVVVEVSGLNKGSGGCAQFSVVRVCRVTKGTDMLRPLQIRPDAVEEAKGSRVPVMRPGGGCPWPLEGGCSTKGTSGLVRGVACPQSPGSLLCTAGAEVPMEACCTDGHQMATQHKDCSLPYTSESKECRMVQEQCCQNQLEELHCAAGISLADEGDSCAAPQGDNASLEAMIVKRCCHCCLLGRAAQAQGQSCEYNLMVGYQCGLVFRACCVKGQENADFAPGDIGDLQETAKVSEIEEEQEDPYLNDRCRGGGPCKQQCRDTGQEVVCSCFVGYQLLPDGVSCEDINECIKGSQNCRLGETCINTVGSFRCQRDSSCGTGYELTEDNDCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPAEPCGPGHMCVNSLGSFRCECKAGYYFDGISRTCVDINECRRYPGRLCGHKCENTPGSYYCSCTIGFRLSSDGRSCEDVNECHSSPCSQECANVYGSYQCYCRRGYQLSDVDGTTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSTGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGSFRCLAFECPENYRRSADTRCERLPCHENQECPKLPLRITYYHLSFPTNIQVPAVVFRMGPSSAVPGDSMQLAITGGNEEGFFTTQKVNHHSGVVALTKPVPEPRDLLLTVRMDLYRHGTVSSFVAKLYIFVSAEL", "length": 799, "header": "tr|A0A286ZLN2-1|F1SM61_PIG Computationally mapped isoform of Fibulin-1 OS=Sus scrofa OX=9823 GN=FBLN1 PE=1 SV=1 CANONICAL=F1SM61-1" }, "locus": { "chromosome": "5", "start_pos": 3911709, "end_pos": 3874541, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050278.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050278.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032468.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032468.1" } ] } }, { "isoform_ac": "A0A287AL89-1", "url": "https://www.uniprot.org/uniprotkb/F1SM61/entry#A0A287AL89-1", "sequence": { "sequence": "MAPVFLALCTAKAETPSGQVPLRVAGVWLEQGFPAAELQPRQQWIQQVVVEVSGLNKGSGGCAQFSVVRVCRVTKGTDMLRPLQIRPDAVEEAKGSRVPVMRPGGGCPWPLEGGCSTKGTSGLVRGVACPQSPGSLLCTAGAEVPMEACCTDGHQMATQHKDCSLPYTSESKECRMVQEQCCQNQLEELHCAAGISLADEGDSCAAPQGDNASLEAMIVKRCCHCCLLGRAAQAQGQSCEYNLMVGYQCGLVFRACCVKGQENADFAPGDIGDLQETAKVSEIEEEQEDPYLNDRCRGGGPCKQQCRDTGQEVVCSCFVGYQLLPDGVSCEDINECIKGSQNCRLGETCINTVGSFRCQRDSSCGTGYELTEDNDCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPAEPCGPGHMCVNSLGSFRCECKAGYYFDGISRTCVDINECRRYPGRLCGHKCENTPGSYYCSCTIGFRLSSDGRSCEDVNECHSSPCSQECANVYGSYQCYCRRGYQLSDVDGTTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSTGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGSFRCLAFECPENYRRSADTLRQEKTDTIRCIKSCRPNDVTCVLAPVHTISHTVVSLPTFREFTRPEEIIFLRAVTPAHPANHADIIFDITDGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEYWF", "length": 819, "header": "tr|A0A287AL89-1|F1SM61_PIG Computationally mapped isoform of Fibulin-1 OS=Sus scrofa OX=9823 GN=FBLN1 PE=1 SV=1 CANONICAL=F1SM61-1" }, "locus": { "chromosome": "5", "start_pos": 3911709, "end_pos": 3840155, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046398.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046398.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044658.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044658.1" } ] } }, { "isoform_ac": "A0A5G2QCT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SM61/entry#A0A5G2QCT3-1", "sequence": { "sequence": "MAPVFLALCTAKAETPSGQVPLRSPGSLLCTAGAEVPMEACCTDGHQMATQHKDCSLPYTSESKECRMVQEQCCQNQLEELHCAAGISLADEGDSCAAPQGDNASLEAMIVKRCCHCCLLGRAAQAQGQSCEYNLMVGYQCGLVFRACCVKGQENADFAPGDIGDLQETAKVSEIEEEQEDPYLNDRCRGGGPCKQQCRDTGQEVVCSCFVGYQLLPDGVSCEDINECIKGSQNCRLGETCINTVGSFRCQRDSSCGTGYELTEDNDCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPAEPCGPGHMCVNSLGSFRCECKAGYYFDGISRTCVDINECRRYPGRLCGHKCENTPGSYYCSCTIGFRLSSDGRSCEDVNECHSSPCSQECANVYGSYQCYCRRGYQLSDVDGTTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSTGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGSFRCLAFECPENYRRSADTLRQEKTDTIRCIKSCRPNDVTCVLAPVHTISHTVVSLPTFREFTRPEEIIFLRAVTPAHPANHADIIFDITDGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEYWF", "length": 711, "header": "tr|A0A5G2QCT3-1|F1SM61_PIG Computationally mapped isoform of Fibulin-1 OS=Sus scrofa OX=9823 GN=FBLN1 PE=1 SV=1 CANONICAL=F1SM61-1" }, "locus": { "chromosome": "5", "start_pos": 3911709, "end_pos": 3840155, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072890.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072890.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061381.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061381.1" } ] } }, { "isoform_ac": "A0A5G2R662-1", "url": "https://www.uniprot.org/uniprotkb/F1SM61/entry#A0A5G2R662-1", "sequence": { "sequence": "MAPVFLALCTAKAETPSGQVPLRVAGVWLEQGFPAAELQPRQQWIQQVVVEVSGLNKGSGGCAQFSVVRVCRVTKGTDMLRPLQIRPDAVEEAKGSRVPVMRPGGGCPWPLEGGCSTKGTSGLVRGVACPQSPGSLLCTAGAEVPMEACCTDGHQMATQHKDCSLPYTSESKECRMVQEQCCQNQLEELHCAAGISLADEGDSCAAPQGDNASLEAMIVKRCCHCCLLGRAAQAQGQSCEYNLMVGYQCGLVFRACCVKGQENADFAPGDIGDLQETAKVSEIEEEQEDPYLNDRCRGGGPCKQQCRDTGQEVVCSCFVGYQLLPDGVSCEDINECIKGSQNCRLGETCINTVGSFRCQRDSSCGTGYELTEDNDCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPAEPCGPGHMCVNSLGSFRCECKAGYYFDGISRTCVDINECRRYPGRLCGHKCENTPGSYYCSCTIGFRLSSDGRSCEDVNECHSSPCSQECANVYGSYQCYCRRGYQLSDVDGTTCEDIDECVTGIHNCSINETCFNIQGSFRCLAFECPENYRRSADTLRQEKTDTIRCIKSCRPNDVTCVLAPVHTISHTVVSLPTFREFTRPEEIIFLRAVTPAHPANHADIIFDITDGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEYWF", "length": 775, "header": "tr|A0A5G2R662-1|F1SM61_PIG Computationally mapped isoform of Fibulin-1 OS=Sus scrofa OX=9823 GN=FBLN1 PE=1 SV=1 CANONICAL=F1SM61-1" }, "locus": { "chromosome": "5", "start_pos": 3911709, "end_pos": 3840155, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076272.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076272.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071830.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071830.1" } ] } }, { "isoform_ac": "F1SM61-1", "url": "https://www.uniprot.org/uniprotkb/F1SM61/entry#F1SM61-1", "sequence": { "sequence": "MERAAPSRRVPLPLLLLGGLSLLAAPAGAEVPMEACCTDGHQMATQHKDCSLPYTSESKECRMVQEQCCQNQLEELHCAAGISLADEGDSCAAPQGDNASLEAMIVKRCCHCCLLGRAAQAQGQSCEYNLMVGYQCGLVFRACCVKGQENADFAPGDIGDLQETAKVSEIEEEQEDPYLNDRCRGGGPCKQQCRDTGQEVVCSCFVGYQLLPDGVSCEDINECIKGSQNCRLGETCINTVGSFRCQRDSSCGTGYELTEDNDCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPAEPCGPGHMCVNSLGSFRCECKAGYYFDGISRTCVDINECRRYPGRLCGHKCENTPGSYYCSCTIGFRLSSDGRSCEDVNECHSSPCSQECANVYGSYQCYCRRGYQLSDVDGTTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSTGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGSFRCLAFECPENYRRSADTLRQEKTDTIRCIKSCRPNDVTCVLAPVHTISHTVVSLPTFREFTRPEEIIFLRAVTPAHPANHADIIFDITDGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEYWF", "length": 706, "header": "tr|F1SM61-1|F1SM61_PIG Isoform 1 of Fibulin-1 OS=Sus scrofa OX=9823 GN=FBLN1 PE=1 SV=2 CANONICAL=F1SM61-1" }, "locus": { "chromosome": "5", "start_pos": 3927057, "end_pos": 3840155, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000011.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000011.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000011.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000011.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 625, "start_aa": "Thr", "end_pos": 625, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr625", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZLN2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLN2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519144", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519144", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MJB2-1", "protein_name": "Fibulin-1", "gene_name": "FBLN1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MERAAPSRRVPLLLLLLGGLSLLAAPAGADVSMEACCADGHRMATEHRACSLPYTSESKECRMVQEQCCQNQLEELHCATGINLANEQDSCATPRGDNTSLEAMFVKRCCHCCLLGRAAQAQGQSCEYSLMVGYQCGLVFRACCVKGQETADFAPGDGGDLQETAKVSEIEEEQEDPYLNDRCRGGGPCKQQCRDTGEEVVCSCFVGYQLLPDGVSCEDVNECITGGQSCRLGETCVNTAGSFRCQRDSSCGTGYELTEDNDCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPSEPCGPGHLCVNSPGSFRCECKAGYYFDGISRTCVDINECRRYPGRLCGHKCENTPGSYYCSCTLGFRLSSDGRSCEDVNECNSNPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPPTGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGSFRCLAFECPENYRRSTDALRQEKTDTVRCIKSCRPNDVACVLDPVHTISHTVVSLPTFREFTRPEEIIFLRAITPAYPANHADIIFDITDGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVSVHIFVSEYWF", "length": 706 }, "evidence": [ { "id": "F1SM61", "url": "https://omabrowser.org/oma/group/F1SM61/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZQ25-1", "protein_name": "Fibulin-1", "gene_name": "Fbln1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERPAPSRLVPLPLLLLGSLSLLAARANADISMEACCTEGNQMANQHRDCSLSYTSESKECRMVQEQCCHNQLEELHCATGINLASEPDGCASLHNYNSSLETIFIKRCCHCCMLGRAAQARGQTCEPNLMISYQCGLVFRACCVKGQENSDFVRGDGTDLQDPAKIPEEEEQEDPYLNDRCRGGGPCKQQCRDTGDEVICSCFVGYQLQSDGVSCEDINECITGSHNCRLGESCINTVGSFRCQRDSSCGTGYELTEDNNCKDIDECETGIHNCPPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPAEPCGKGHHCLNSPGSFRCECKAGYYFDGISRTCVDINECQRYPGRLCGHKCENTPGSYHCSCSAGFRLSVDGRSCEDVNECLNSPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGSFRCLSFECPENYRRSADTFRQEKTDTVRCIKSCRPTDEACMRDPVHTVSHTVISLPTFREFTRPEEIIFLRAVTPLYPANQADIIFDITEGNLRDSFDIIKRYEDGMTVGVVRQVRPIVGPFYAVLKLEMNYVLGGVVSHRNVVNVHIFVSEYWF", "length": 705 }, "evidence": [ { "id": "F1SM61", "url": "https://omabrowser.org/oma/group/F1SM61/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23142-1", "protein_name": "Fibulin-1", "gene_name": "FBLN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERAAPSRRVPLPLLLLGGLALLAAGVDADVLLEACCADGHRMATHQKDCSLPYATESKECRMVQEQCCHSQLEELHCATGISLANEQDRCATPHGDNASLEATFVKRCCHCCLLGRAAQAQGQSCEYSLMVGYQCGQVFQACCVKSQETGDLDVGGLQETDKIIEVEEEQEDPYLNDRCRGGGPCKQQCRDTGDEVVCSCFVGYQLLSDGVSCEDVNECITGSHSCRLGESCINTVGSFRCQRDSSCGTGYELTEDNSCKDIDECESGIHNCLPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPIGHTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECAPPAEPCGKGHRCVNSPGSFRCECKTGYYFDGISRMCVDVNECQRYPGRLCGHKCENTLGSYLCSCSVGFRLSVDGRSCEDINECSSSPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGGFRCLAFECPENYRRSAATLQQEKTDTVRCIKSCRPNDVTCVFDPVHTISHTVISLPTFREFTRPEEIIFLRAITPPHPASQANIIFDITEGNLRDSFDIIKRYMDGMTVGVVRQVRPIVGPFHAVLKLEMNYVVGGVVSHRNVVNVHIFVSEYWF", "length": 703 }, "evidence": [ { "id": "F1SM61", "url": "https://omabrowser.org/oma/group/F1SM61/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q08879-1", "protein_name": "Fibulin-1", "gene_name": "Fbln1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERPVPSRLVPLPLLLLSSLSLLAARANADISMEACCTDGNQMANQHRDCSLPYTSESKECRMVQEQCCHNQLEELHCATGINLASEPEGCASLHSYNSSLETIFIKRCCHCCMLGKASLARDQTCEPIVMISYQCGLVFRACCVKARENSDFVQGNGADLQDPAKIPDEEDQEDPYLNDRCRGGGPCKQQCRDTGDEVICSCFVGYQLQSDGVSCEDINECITGSHNCRLGESCINTVGSFRCQRDSSCGTGYELTEDNNCKDIDECETGIHNCPPDFICQNTLGSFRCRPKLQCKSGFIQDALGNCIDINECLSISAPCPVGQTCINTEGSYTCQKNVPNCGRGYHLNEEGTRCVDVDECSPPAEPCGKGHHCLNSPGSFRCECKAGFYFDGISRTCVDINECQRYPGRLCGHKCENTPGSFHCSCSAGFRLSVDGRSCEDVNECLNSPCSQECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPSSGYRLAPNGRNCQDIDECVTGIHNCSINETCFNIQGSFRCLSFECPENYRRSADTFRQEKTDTVRCIKSCRPNDEACVRDPVHTVSHTVISLPTFREFTRPEEIIFLRAVTPLYPANQADIIFDITEGNLRDSFDIIKRYEDGMTVGVVRQVRPIVGPFYAVLKLEMNYVLGGVVSHRNVVNVHIFVSEYWF", "length": 705 }, "evidence": [ { "id": "F1SM61", "url": "https://omabrowser.org/oma/group/F1SM61/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "elastic fiber", "id": "GO:0071953", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071953", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "peptidase activator activity", "id": "GO:0016504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016504", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "integrin binding", "id": "GO:0005178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005178", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "fibronectin binding", "id": "GO:0001968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001968", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "extracellular matrix structural constituent", "id": "GO:0005201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005201", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "fibrinogen binding", "id": "GO:0070051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070051", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "negative regulation of stem cell proliferation", "id": "GO:2000647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000647", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "negative regulation of ERK1 and ERK2 cascade", "id": "GO:0070373", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070373", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "negative regulation of substrate adhesion-dependent cell spreading", "id": "GO:1900025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900025", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "negative regulation of cell motility", "id": "GO:2000146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000146", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" }, { "name": "blood coagulation, fibrin clot formation", "id": "GO:0072378", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072378", "evidence": [ { "database": "UniProtKB", "id": "F1SM61", "url": "https://www.uniprot.org/uniprotkb/F1SM61" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 538, "end_pos": 540, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SM61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM61" }, { "id": "PS01178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Anaphylatoxin-like", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 69, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SM61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM61" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 359, "end_pos": 401, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 625 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 538, "end_pos": 540 }, { "start_pos": 542, "end_pos": 544 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKM8-1", "uniprot_ac": "F1SKM8", "uniprot_id": "F1SKM8_PIG", "mass": { "chemical_mass": 21074.0, "monoisotopic_mass": 21074.0 }, "refseq": { "ac": "XP_003132225", "name": "nucleoside diphosphate kinase 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132225" }, "gene_names": [ { "name": "NME6", "type": "recommended", "evidence": [ { "id": "F1SKM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ] }, { "name": "NME6", "type": "synonym", "evidence": [ { "id": "XP_003132225", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132225" } ] } ], "protein_names": [ { "name": "Nucleoside diphosphate kinase", "type": "recommended", "evidence": [ { "id": "F1SKM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM8/entry#names_and_taxonomy" } ] }, { "name": "2.7.4.6", "type": "synonym", "evidence": [ { "id": "F1SKM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM8/entry#names_and_taxonomy" } ] }, { "name": "nucleoside diphosphate kinase 6", "type": "synonym", "evidence": [ { "id": "XP_003132225", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132225" } ] } ], "function": [ { "annotation": "Catalytic subunit of a complex with RCC1L, which catalyzes the transfer of a gamma-phosphoryl group from a nucleoside triphosphate, mainly ATP, to a nucleoside diphosphate via a ping-pong mechanism involving the formation of a phosphohistidine intermediate. Participates in the regulation of mitochondrial nucleotide levels, mitoribosome biogenesis, and mitochondrial RNA abundances. Supplies pyrimidine ribonucleoside triphosphates (rNTPs) for mitochondrial transcription and is required for the maintenance of mitochondrial DNA (mtDNA) when the import of pyrimidine deoxyribonucleoside triphosphates (dNTPs) is limited from the cytosol is limited. As a monomer, lacks nucleoside diphosphate kinase (NDPK) activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZM43", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM43#function" }, { "database": "UniProtKB", "id": "ARBA00094157", "url": "https://www.uniprot.org/uniprotkb/ARBA00094157#function" }, { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NME6", "url": "https://www.uniprot.org/uniprotkb/F1SKM8", "locus": { "chromosome": "13", "start_pos": 31046948, "end_pos": 31053130, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011347", "url": "https://www.ensembl.org/id/ENSSSCG00000011347" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011347", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011347", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04414", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04414", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520587", "url": "https://www.ncbi.nlm.nih.gov/gene/100520587", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001564", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001564", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520587", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520587", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WRKEECQ", "url": "https://omabrowser.org/oma/group/WRKEECQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKM8", "url": "https://www.orthodb.org/?gene=F1SKM8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46956", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46956", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46956:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46956:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00334", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00334", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-499943", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-499943", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003132225", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132225", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "18113", "url": "https://www.rhea-db.org/rhea/18113", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "25098", "url": "https://www.rhea-db.org/rhea/25098", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "25237", "url": "https://www.rhea-db.org/rhea/25237", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "27686", "url": "https://www.rhea-db.org/rhea/27686", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "30347", "url": "https://www.rhea-db.org/rhea/30347", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "44640", "url": "https://www.rhea-db.org/rhea/44640", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "84315", "url": "https://www.rhea-db.org/rhea/84315", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZM43", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZM43-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6S6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6S6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKM8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKM8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSILRSPQALQLTLALIKPDAVAHPLILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVHYSPEGGIHCAAGTGGPGPA", "length": 186, "header": "tr|F1SKM8-1|F1SKM8_PIG Isoform 1 of Nucleoside diphosphate kinase OS=Sus scrofa OX=9823 GN=NME6 PE=3 SV=1 CANONICAL=F1SKM8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZM43-1", "url": "https://www.uniprot.org/uniprotkb/F1SKM8/entry#A0A286ZM43-1", "sequence": { "sequence": "IDQNLGGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVHYSPEGGIHCAAGTGGPGPA", "length": 114, "header": "tr|A0A286ZM43-1|F1SKM8_PIG Computationally mapped isoform of Nucleoside diphosphate kinase OS=Sus scrofa OX=9823 GN=NME6 PE=3 SV=1 CANONICAL=F1SKM8-1" }, "locus": { "chromosome": "13", "start_pos": 31053104, "end_pos": 31048733, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037282.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037282.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032538.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032538.2" } ] } }, { "isoform_ac": "A0A5G2R6S6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKM8/entry#A0A5G2R6S6-1", "sequence": { "sequence": "MTSILRSPQALQLTLALIKPDAVAHPLILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVHYSPEGGIHCAAGTGGPGPA", "length": 119, "header": "tr|A0A5G2R6S6-1|F1SKM8_PIG Computationally mapped isoform of Nucleoside diphosphate kinase OS=Sus scrofa OX=9823 GN=NME6 PE=3 SV=1 CANONICAL=F1SKM8-1" }, "locus": { "chromosome": "13", "start_pos": 31052295, "end_pos": 31048733, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067693.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067693.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072785.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072785.1" } ] } }, { "isoform_ac": "F1SKM8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKM8/entry#F1SKM8-1", "sequence": { "sequence": "MTSILRSPQALQLTLALIKPDAVAHPLILEAIHQQILSNKFLIVRMRELLWRKEDCQKFYQEHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTVMGPTRVFRARHIAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVHYSPEGGIHCAAGTGGPGPA", "length": 186, "header": "tr|F1SKM8-1|F1SKM8_PIG Isoform 1 of Nucleoside diphosphate kinase OS=Sus scrofa OX=9823 GN=NME6 PE=3 SV=1 CANONICAL=F1SKM8-1" }, "locus": { "chromosome": "13", "start_pos": 31052295, "end_pos": 31048733, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012424.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012424.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012100.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012100.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZM43", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520587", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520587", "resource": "KEGG Pathway" }, { "id": "R-SSC-499943", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-499943", "resource": "Reactome", "description": "Interconversion of nucleotide di- and triphosphates" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TUI5-1", "protein_name": "Nucleoside diphosphate kinase", "gene_name": "NME6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWRKEDCQKFYREHEGRFFYQRLVEFMASSLLSALGSSTQLESGPIRAYILAHKDAIQLWRTVMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVHYSPEGGIHFAAPSGGLGPA", "length": 200 }, "evidence": [ { "id": "F1SKM8", "url": "https://omabrowser.org/oma/group/F1SKM8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O75414-1", "protein_name": "Nucleoside diphosphate kinase 6, mitochondrial", "gene_name": "NME6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGVHYVAGTGGLGPA", "length": 186 }, "evidence": [ { "id": "F1SKM8", "url": "https://omabrowser.org/oma/group/F1SKM8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O88425-1", "protein_name": "Nucleoside diphosphate kinase 6, mitochondrial", "gene_name": "Nme6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRTRELQWKLEDCRRFYREHEGRFFYQRLVEFMTSGPIRAYILAHKDAIQLWRTLMGPTRVFRARYIAPDSIRGSLGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVHYSPEEGIHCAAETGGHKQPNKT", "length": 189 }, "evidence": [ { "id": "F1SKM8", "url": "https://omabrowser.org/oma/group/F1SKM8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54CG9-1", "protein_name": "Probable nucleoside diphosphate kinase DDB_G0292928", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKFKYTLAIIKPDILVKQNQNVDKIINKIESKFIIHQRKQIKLSLEEAEQFYKDHRGKFFYERLISFMTRGDIIPLILSDKSLEINNNNNNNNNNTSIKPWRDFIGPTHRDKAREQIGCLRGEYGTSDTRNAFHGSGSEEEAIDEINFFFPHFLENNKK", "length": 160 }, "evidence": [ { "id": "F1SKM8", "url": "https://omabrowser.org/oma/group/F1SKM8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6DI51-1", "protein_name": "Nucleoside diphosphate kinase 6, mitochondrial", "gene_name": "nme6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRCVKALQLTLAVIKPDAMAHPLILEALHQKILENFIIIRKKDLIWRKADSEMFYAEHSGRFFFQRLVEFMSSGPMRAYILAREDAITHWRTMMGPTKVFRARFSSPETLRGKYGLTDTRNTTHGSDSIESAKREISFFFPEFSAEEWMMREEPHFRLGHTEYNEESQIHTVKHT", "length": 175 }, "evidence": [ { "id": "F1SKM8", "url": "https://omabrowser.org/oma/group/F1SKM8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "nucleoside diphosphate kinase activity", "id": "GO:0004550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004550", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "GTP biosynthetic process", "id": "GO:0006183", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006183", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "UTP biosynthetic process", "id": "GO:0006228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006228", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "CTP biosynthetic process", "id": "GO:0006241", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006241", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "nucleotide metabolic process", "id": "GO:0009117", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009117", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "negative regulation of cell growth", "id": "GO:0030308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030308", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "negative regulation of mitotic nuclear division", "id": "GO:0045839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045839", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "pyrimidine ribonucleotide salvage", "id": "GO:0010138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010138", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SKM8", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "18113", "name": "", "equation": "a ribonucleoside 5'-diphosphate + ATP = a ribonucleoside 5'-triphosphate + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "18113", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/18113" } ] }, { "id": "25098", "name": "", "equation": "UDP + ATP = UTP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "25098", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25098" } ] }, { "id": "25237", "name": "", "equation": "CDP + ATP = CTP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "25237", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25237" } ] }, { "id": "27686", "name": "", "equation": "GDP + ATP = GTP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "27686", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/27686" } ] }, { "id": "30347", "name": "", "equation": "IDP + ATP = ITP + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "30347", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/30347" } ] }, { "id": "44640", "name": "", "equation": "a 2'-deoxyribonucleoside 5'-diphosphate + ATP = a 2'-deoxyribonucleoside 5'-triphosphate + ADP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "44640", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/44640" } ] }, { "id": "84315", "name": "", "equation": "ADP + ATP = ADP + ATP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "84315", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/84315" } ] }, { "id": "R-SSC-9605496", "name": "NME6 phosphorylates (d)NDPs to (d)NTPs", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9605496", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9605496" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM8" }, { "id": "SM00562", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00562" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleoside diphosphate kinase-like", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 152, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPZ1-1", "uniprot_ac": "F1SPZ1", "uniprot_id": "F1SPZ1_PIG", "mass": { "chemical_mass": 37486.0, "monoisotopic_mass": 37486.0 }, "refseq": {}, "gene_names": [ { "name": "RLIG1", "type": "recommended", "evidence": [ { "id": "F1SPZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1" } ] }, { "name": "C5H12orf29", "type": "synonym", "evidence": [ { "id": "F1SPZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1" } ] } ], "protein_names": [ { "name": "RNA ligase 1", "type": "recommended", "evidence": [ { "id": "F1SPZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1/entry#names_and_taxonomy" } ] }, { "name": "6.5.1.3", "type": "synonym", "evidence": [ { "id": "F1SPZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1/entry#names_and_taxonomy" } ] }, { "name": "RNA ligase", "type": "synonym", "evidence": [ { "id": "F1SPZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Functions as an RNA ligase, in vitro. The ligation reaction entails three nucleotidyl transfer steps. In the first step, the RNA ligase reacts with ATP in the absence of nucleic acid to form a covalent ligase-AMP intermediate and release pyrophosphate. In step 2, the ligase-AMP binds to the nucleic acid and transfers the adenylate to the 5'-PO4 terminus to form an adenylylated intermediate. In step 3, the RNA ligase directs the attack of the 3'-OH on the 5'-phosphoanhydride linkage, resulting in a repaired 3'-5' phosphodiester and release of AMP. Exhibits selectivity for single-stranded RNA substrates and may not have nick-sealing activity on double-stranded DNA-RNA hybrids. May play a role in maintaining RNA integrity under stress conditions, for example in response to reactive oxygen species (ROS).", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1#function" }, { "database": "UniProtKB", "id": "ARBA00045151", "url": "https://www.uniprot.org/uniprotkb/ARBA00045151#function" }, { "database": "UniProtKB", "id": "A0A286ZM78", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM78#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPZ1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RLIG1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1", "locus": { "chromosome": "5", "start_pos": 94473174, "end_pos": 94489661, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000925", "url": "https://www.ensembl.org/id/ENSSSCG00000000925" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000925", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000925", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157029", "url": "https://www.ncbi.nlm.nih.gov/gene/100157029", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR041211", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041211", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KQFMYSA", "url": "https://omabrowser.org/oma/group/KQFMYSA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A286ZM78", "url": "https://www.orthodb.org/?gene=A0A286ZM78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31219:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31219:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17720", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17720", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZM78", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZM78-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPZ1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPZ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRLGSVQRKMPCVFVTEVKEEPSAKREHQPFKVLATETISHKALEADIYSAIPTEKVDGTCCYVTTYKGQPYLWARLDRKPNKLAEKRFKNFLHSKQNSKEFFWNVEEDFKPVPECWIPAKDTEQLNGSPMPDENGHIPGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHSDDPGLLEISAVPLSDLLEQTLELIGTNINGNPYGLGSKKHPLHLLIPHGAFQIRNLPTLKHNDLLSWFEGCREGKIEGIVWHCNDGCLIKVHRHHLGLCWPIPDTYLNSKPVTINMNLNKYEYAFDAKCLFNYFSKIDNQKFSRLKDIVFSV", "length": 325, "header": "tr|F1SPZ1-1|F1SPZ1_PIG Isoform 1 of RNA ligase 1 OS=Sus scrofa OX=9823 GN=RLIG1 PE=4 SV=2 CANONICAL=F1SPZ1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZM78-1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1/entry#A0A286ZM78-1", "sequence": { "sequence": "MRRLGSVQRKMPCVFVTEVKEEPSAKREHQPFKVLATETISHKALEADIYSAIPTEKVDGTCCYVTTYKGQPYLWARLDRKPNKLAEKRFKNFLHSKQNSKEFFWNVEEDFKPVPECWIPAKDTEQLNGSPMPDENGHIPGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHSDDPGLLEISAVPLSDLLEQTLELIGTNINGNPYGLGSKKHPLHLLIPHGAFQIRNLPTLKHNDLLSWFEGCREGKIEGIVWHCNDGCLIKVLEFVKLLPKQCLVLHAVQILMRKIDNKKVNMSGEQQL", "length": 301, "header": "tr|A0A286ZM78-1|F1SPZ1_PIG Computationally mapped isoform of RNA ligase 1 OS=Sus scrofa OX=9823 GN=RLIG1 PE=4 SV=1 CANONICAL=F1SPZ1-1" }, "locus": { "chromosome": "5", "start_pos": 94489502, "end_pos": 94475520, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046326.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046326.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032567.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032567.1" } ] } }, { "isoform_ac": "F1SPZ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1/entry#F1SPZ1-1", "sequence": { "sequence": "MRRLGSVQRKMPCVFVTEVKEEPSAKREHQPFKVLATETISHKALEADIYSAIPTEKVDGTCCYVTTYKGQPYLWARLDRKPNKLAEKRFKNFLHSKQNSKEFFWNVEEDFKPVPECWIPAKDTEQLNGSPMPDENGHIPGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHSDDPGLLEISAVPLSDLLEQTLELIGTNINGNPYGLGSKKHPLHLLIPHGAFQIRNLPTLKHNDLLSWFEGCREGKIEGIVWHCNDGCLIKVHRHHLGLCWPIPDTYLNSKPVTINMNLNKYEYAFDAKCLFNYFSKIDNQKFSRLKDIVFSV", "length": 325, "header": "tr|F1SPZ1-1|F1SPZ1_PIG Isoform 1 of RNA ligase 1 OS=Sus scrofa OX=9823 GN=RLIG1 PE=4 SV=2 CANONICAL=F1SPZ1-1" }, "locus": { "chromosome": "5", "start_pos": 94489502, "end_pos": 94475206, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001010.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001010.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000988.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000988.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZM78", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM78" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1RLE3-1", "protein_name": "RNA ligase 1", "gene_name": "C12orf29", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSRRGAVQRKVPCLFVTEVKEEPSVKRERQPFKVLATETLSEKALEADIYNAVPTEKVDGTCCYVTTYKGQPYLWARLDRRPNKQAEKRFKRFLYSVEDCKEFIWNVEEDFKPVPDTWIPAKEIEFSNGNPLPDENGHMPGWVPVEKNSKQYCWHSSVVSYETEMALVLKHHADPGLLEIRPVSLSELLEQTLELIGTNINANPYGLGSKKQPIHLLVPHGAFEIKNPPTLKQSDIVSWFEGCSEGKVEGIVWHCRDGCLIKLHRHHLGLCWPLAETYLNSQPVVISFNRNDYDCDFGPKSLFHQFSKLDGQRFDRLKDIKFDD", "length": 324 }, "evidence": [ { "id": "F1SPZ1", "url": "https://omabrowser.org/oma/group/F1SPZ1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2MLK5-1", "protein_name": "RNA ligase 1", "gene_name": "C1H12orf29", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSRLGSVQRKMPCVFVTEVKAEPSAKREHQPFKVLATETLSEKALDADVYNAIATEKVDGTCCYVTNYKGQPYLWARLDRKPNKQADKRFKKFLHSKDNSKAFLWNMEEDFKPVPECWIPAKEIEQQNGKPVPDENGHIPGWVPVEKNSKQYCWHSSVVNYEFGIALVLRHDPDEPGLLEICAVPLSELLEQTLELIGTNINGNPYGLGSKKSPLHFLIPHGAFPVRNLPTLKHNDLLSWFEDCREGKIEGIVWHCGDGCLIKVHRHHLGLCWPLPDTYMNSKPVIVNMNLNKYDCAFDNECLFNQFLKKDKQKFDRLKDIMLDV", "length": 325 }, "evidence": [ { "id": "F1SPZ1", "url": "https://omabrowser.org/oma/group/F1SPZ1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2KJ69-1", "protein_name": "RNA ligase 1", "gene_name": "RLIG1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRRLGSVQRKMPCVFVTEVKEEPSTKREHQPFKVLATETLSHKALDADIHNAIPTEKVDGTCCYVTNYKGQPYLWARLDRKPNKLAEKRFKNFLHLKQNSKEFFWNVEEDFKPVPECWIPAKEIEQINGNPIPDENGHIPGWVPVEKNSKQHCWHSSVVDYESEIALVLRHHPDDPGLLEISAVPLSDLLEQTLELIGTNINGNPYGLGSKKHPLHLLIPHGAFQIRNLPTLKHSDLLSWFDGCREGKIEGIVWHCNDGCLIKVHRHHLGLCWPIPDTYMNSKPVIINMNLNKYEYAFDAKCLFNHFSKIDNQKFGRLKDIILTV", "length": 325 }, "evidence": [ { "id": "F1SPZ1", "url": "https://omabrowser.org/oma/group/F1SPZ1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5PR55-1", "protein_name": "RNA ligase 1", "gene_name": "", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRRLGSVQQKIPCVFLTEVRDEPSRKRDCQQFQVVATENVSPAALASDVHCAAATEKVDGTCCYVTTFNGEPYLWARLDRKPTKQADKRFKKYQYSQKTCKGFVWNVNEDFREVPEFWMAAHRVQHENGHPVPDEHGHIPGWVPVDHTNKQYCWHSSVVNYGTGVALVLKTHGEDEGQLEIVSVPLADLMEQTLELIGTNVNGNPYGLGSKKHPVHVLVPHGVLRIRNPPAVEFQQICSWFQECQEGRVEGIVWHCDDGMLIKIHRHHLGLKWPVADTFLNTRPVVVHVDESDADPCASEKDLFKSFSSVNRQTFSSVRDIQFEP", "length": 325 }, "evidence": [ { "id": "F1SPZ1", "url": "https://omabrowser.org/oma/group/F1SPZ1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6AXM9-1", "protein_name": "RNA ligase 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNRLGSVQRKMPCVFVTEVKAEPSAKREHQPFKVLATETLSEKALDADVYNAVATEKVDGTCCYVTNYKGQPYLWARLDRKPNKQADKRFKKFLHSKENAKEFHWNTEEDFKPVPECWIPAKEIEKQNGKPVPDENGHIPGWVPVEKNSKQYCWHSSVVSYEFGIALVLRHHPDDPGVLEISAVPLSELLEQTLELIGTNINGNPYGLGSKKYPLHFLTPHGAFQVRNLPTLKHNDLLSWFEGCREGQIEGIVWHCGDGCLIKVHRHHLGLCWPLPDTYMNSKPVIINMNLDKYDCAFDHQSLFNKFSKIDKQKFDRLKDITLDI", "length": 325 }, "evidence": [ { "id": "F1SPZ1", "url": "https://omabrowser.org/oma/group/F1SPZ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BHN7-1", "protein_name": "RNA ligase 1", "gene_name": "Rlig1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLGSVQRKMPCVFVTEVKAEPSAKREHQPFKVLATETLSEKALDADVYNAVATEKVDGTCCYVTNYKGQPYLWARLDRKPNKQADKRFKKFLHSKESAKEFHWNTEEDFKPVPECWIPAKEIEKQNGKPVPDENGHIPGWVPVEKGSKQYCWHSSVVNYEFGIALVLRHHPDDPGVLEISAVPLSELLEQTLELIGTSINGNPYGLGSKKSPLHFLTPHGAFQVRNLPTLKHNDLLSWFEDCREGQIEGIVWHCGDGCLIKVHRHHLGLCWPLPDTYMNSKPVIINMNLNLNNYDCAFDNQSLFNQFSKIDKQKFERLKDIILDV", "length": 327 }, "evidence": [ { "id": "F1SPZ1", "url": "https://omabrowser.org/oma/group/F1SPZ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N999-1", "protein_name": "RNA ligase 1", "gene_name": "RLIG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKRLGSVQRKMPCVFVTEVKEEPSSKREHQPFKVLATETVSHKALDADIYSAIPTEKVDGTCCYVTTYKDQPYLWARLDRKPNKQAEKRFKNFLHSKENPKEFFWNVEEDFKPAPECWIPAKETEQINGNPVPDENGHIPGWVPVEKNNKQYCWHSSVVNYEFEIALVLKHHPDDSGLLEISAVPLSDLLEQTLELIGTNINGNPYGLGSKKHPLHLLIPHGAFQIRNLPSLKHNDLVSWFEDCKEGKIEGIVWHCSDGCLIKVHRHHLGLCWPIPDTYMNSRPVIINMNLNKCDSAFDIKCLFNHFLKIDNQKFVRLKDIIFDV", "length": 325 }, "evidence": [ { "id": "F1SPZ1", "url": "https://omabrowser.org/oma/group/F1SPZ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1" } ], "pmid": "" }, { "name": "RNA ligase (ATP) activity", "id": "GO:0003972", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003972", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "response to reactive oxygen species", "id": "GO:0000302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000302", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1" } ], "pmid": "" }, { "name": "RNA repair", "id": "GO:0042245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042245", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNE9-1", "uniprot_ac": "F1SNE9", "uniprot_id": "F1SNE9_PIG", "mass": { "chemical_mass": 97426.0, "monoisotopic_mass": 97426.0 }, "refseq": {}, "gene_names": [ { "name": "COPG2", "type": "recommended", "evidence": [ { "id": "F1SNE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ] } ], "protein_names": [ { "name": "Coatomer subunit gamma", "type": "recommended", "evidence": [ { "id": "F1SNE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNE9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZXP6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXP6#function" }, { "database": "UniProtKB", "id": "PIRNR037093", "url": "https://www.uniprot.org/uniprotkb/PIRNR037093#function" }, { "database": "UniProtKB", "id": "A0A8W4FDY3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDY3#function" }, { "database": "UniProtKB", "id": "A0A5G2R404", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R404#function" }, { "database": "UniProtKB", "id": "A0A5G2R5U6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5U6#function" }, { "database": "UniProtKB", "id": "ARBA00024791", "url": "https://www.uniprot.org/uniprotkb/ARBA00024791#function" }, { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9#function" }, { "database": "UniProtKB", "id": "A0A287A5X5", "url": "https://www.uniprot.org/uniprotkb/A0A287A5X5#function" }, { "database": "UniProtKB", "id": "A0A286ZQ12", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ12#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COPG2", "url": "https://www.uniprot.org/uniprotkb/F1SNE9", "locus": { "chromosome": "18", "start_pos": 18332216, "end_pos": 18209263, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016553", "url": "https://www.ensembl.org/id/ENSSSCG00000016553" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016553", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016553", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002553", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002553", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013041", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013041", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DFIEDCE", "url": "https://omabrowser.org/oma/group/DFIEDCE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10261", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10261", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10261:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10261:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16381", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16381", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6807878", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811434", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZQ12", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQ12-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXP6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5X5", "url": "https://www.uniprot.org/uniprotkb/A0A287A5X5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5X5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R404", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R404", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R404-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R404-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5U6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5U6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5U6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDY3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNE9-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFRHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEYFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWVNEAQEAASSDNIMVQYHALGVLYHLKKNDRLAVSKMLNKFTKCGLKSQFAYCMLIRIASRLLKENEEGHESPVFDFIESCLRNKHEMVIYEAASAIIHLPNCSARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIINIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNENLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVATKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTNHVVFQFDCTNTLNDQLLEKVTVQVEPSDSYEVLCCIPAASLPYNQPGICYTLVRLPDDDSIAAAGTFSCTMKFTVRDCDPDTGVPAEEGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVSNIITFLGMQPCERSDKVPENKNSHALYLAGVYRGGCDLLVRSRLALADGVTMQVTVRSKEGTPVDVILASVG", "length": 871, "header": "tr|F1SNE9-1|F1SNE9_PIG Isoform 1 of Coatomer subunit gamma OS=Sus scrofa OX=9823 GN=COPG2 PE=1 SV=2 CANONICAL=F1SNE9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQ12-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE9/entry#A0A286ZQ12-1", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFRHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEYFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLYHALGVLYHLKKNDRLAVSKMLNKFTKCGLKSQFAYCMLIRIASRLLKENEEGHESPVFDFIESCLRNKHEMVIYEAASAIIHLPNCSARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIINIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNENLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVATKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTNHVVFQFDCTNTLNDQLLEKVTVQVEPSDSYEVLCCIPAASLPYNQPGICYTLVRLPDDDSIAAAGTFSCTMKFTVRDCDPDTGVPAEEGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVSNIITFLGMQPCERSDKVPENKNSHALYLAGVYRGGCDLLVRSRLALADGVTMQVTVRSKEGTPVDVILASVG", "length": 842, "header": "tr|A0A286ZQ12-1|F1SNE9_PIG Computationally mapped isoform of Coatomer subunit gamma OS=Sus scrofa OX=9823 GN=COPG2 PE=1 SV=2 CANONICAL=F1SNE9-1" }, "locus": { "chromosome": "18", "start_pos": 18331381, "end_pos": 18209411, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064760.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064760.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033557.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033557.2" } ] } }, { "isoform_ac": "A0A286ZXP6-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE9/entry#A0A286ZXP6-1", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFRHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEYFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWVNEAQEAASSDNIMVQYHALGVLYHLKKNDRLAVSKMLNKFTKCGLKSQFAYCMLIRIASRLLKENEEGHESPVFDFIESCLRNKHEMVIYEAASAIIHLPNCSARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIINIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNENLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVATKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTNHVVFQFDCTNTLNDQLLEKVTVQVEPSDSYEVLCCIPAASLPYNQPGICYTLVRLPDDDSIAALGRKSSPCCTTQAWFTVQPLKVDAACENMGTSSMTCSYHPEGS", "length": 760, "header": "tr|A0A286ZXP6-1|F1SNE9_PIG Computationally mapped isoform of Coatomer subunit gamma OS=Sus scrofa OX=9823 GN=COPG2 PE=1 SV=1 CANONICAL=F1SNE9-1" }, "locus": { "chromosome": "18", "start_pos": 18293309, "end_pos": 18209411, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059717.2", "url": "https://www.ensembl.org/id/ENSSSCT00000059717.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036232.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036232.1" } ] } }, { "isoform_ac": "A0A287A5X5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE9/entry#A0A287A5X5-1", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFRHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWVNEAQEAASSDNIMVQYHALGVLYHLKKNDRLAVSKMLNKFTKCGLKSQFAYCMLIRIASRLLKENEEGHESPVFDFIESCLRNKHEMVIYEAASAIIHLPNCSARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIINIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNENLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVATKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTNHVVFQFDCTNTLNDQLLEKVTVQVEPSDSYEVLCCIPAASLPYNQPGICYTLVRLPDDDSIAAAGTFSCTMKFTVRDCDPDTGVPAEEGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVSNIITFLGMQPCERSDKVPENKNSHALYLAGVYRGGCDLLVRSRLALADGVTMQVTVRSKEGTPVDVILASVG", "length": 847, "header": "tr|A0A287A5X5-1|F1SNE9_PIG Computationally mapped isoform of Coatomer subunit gamma OS=Sus scrofa OX=9823 GN=COPG2 PE=1 SV=2 CANONICAL=F1SNE9-1" }, "locus": { "chromosome": "18", "start_pos": 18331381, "end_pos": 18209411, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054137.2", "url": "https://www.ensembl.org/id/ENSSSCT00000054137.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039218.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039218.2" } ] } }, { "isoform_ac": "A0A5G2R404-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE9/entry#A0A5G2R404-1", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFRHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEYFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWVNEAQEAASSDNIMVQYHALGVLYHLKKNDRLAVSKMLNKFTKCGLKSQFAYCMLIRIASRLLKENEEGHESPVFDFIESCLRNKHEMVIYEAASAIIHLPNCSARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIINIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNENLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVATKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTNHVVFQFDCTNTLNDQLLEKVTVQVEPSDSYEVLCCIPAASLPYNQPGICYTLVRLPDDDSIAGTHTQNGGEGIKN", "length": 729, "header": "tr|A0A5G2R404-1|F1SNE9_PIG Computationally mapped isoform of Coatomer subunit gamma OS=Sus scrofa OX=9823 GN=COPG2 PE=1 SV=1 CANONICAL=F1SNE9-1" }, "locus": { "chromosome": "18", "start_pos": 18289208, "end_pos": 18209411, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075615.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075615.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068924.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068924.1" } ] } }, { "isoform_ac": "A0A5G2R5U6-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE9/entry#A0A5G2R5U6-1", "sequence": { "sequence": "MPRAARRPRPQPPPPAQLLGATSAGSGSNPFRHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEYFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWVNEAQEAASSDNIMVQYHALGVLYHLKKNDRLAVSKMLNKFTKCGLKSQFAYCMLIRIASRLLKENEEGHESPVFDFIESCLRNKHEMVIYEAASAIIHLPNCSARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIINIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNENLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVATKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTNHVVFQFDCTNTLNDQLLEKVTVQVEPSDSYEVLCCIPAASLPYNQPGICYTLVRLPDDDSIAAAGTFSCTMKFTVRDCDPDTGVPAEEGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVSNIITFLGMQPCERSDKVPENKNSHALYLAGVYRGGCDLLVRSRLALADGVTMQVTVRSKEGTPVDVILASVG", "length": 883, "header": "tr|A0A5G2R5U6-1|F1SNE9_PIG Computationally mapped isoform of Coatomer subunit gamma OS=Sus scrofa OX=9823 GN=COPG2 PE=1 SV=1 CANONICAL=F1SNE9-1" }, "locus": { "chromosome": "18", "start_pos": 18331381, "end_pos": 18209687, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071157.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071157.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071700.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071700.1" } ] } }, { "isoform_ac": "A0A8W4FDY3-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE9/entry#A0A8W4FDY3-1", "sequence": { "sequence": "HLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEYFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWVNEAQEAASSDNIMVQYHALGVLYHLKKNDRLAVSKMLNKFTKCGLKSQFAYCMLIRIASRLLKENEEGHESPVFDFIESCLRNKHEMVIYEAASAIIHLPNCSARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIINIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNENLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVATKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTNHVVFQFDCTNTLNDQLLEKVTVQVEPSDSYEVLCCIPAASLPYNQPGICYTLVRLPDDDSIAGTHTQNGGEGIKSALPLELLRVWTGVWGSGIFFFSRTKCNDNDGIFIFIKLVTATEIIL", "length": 755, "header": "tr|A0A8W4FDY3-1|F1SNE9_PIG Computationally mapped isoform of Coatomer subunit gamma OS=Sus scrofa OX=9823 GN=COPG2 PE=1 SV=1 CANONICAL=F1SNE9-1" }, "locus": { "chromosome": "18", "start_pos": 18289275, "end_pos": 18210660, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102666.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102666.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076520.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076520.1" } ] } }, { "isoform_ac": "F1SNE9-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE9/entry#F1SNE9-1", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFRHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEYFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWVNEAQEAASSDNIMVQYHALGVLYHLKKNDRLAVSKMLNKFTKCGLKSQFAYCMLIRIASRLLKENEEGHESPVFDFIESCLRNKHEMVIYEAASAIIHLPNCSARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIINIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNENLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVATKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTNHVVFQFDCTNTLNDQLLEKVTVQVEPSDSYEVLCCIPAASLPYNQPGICYTLVRLPDDDSIAAAGTFSCTMKFTVRDCDPDTGVPAEEGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVSNIITFLGMQPCERSDKVPENKNSHALYLAGVYRGGCDLLVRSRLALADGVTMQVTVRSKEGTPVDVILASVG", "length": 871, "header": "tr|F1SNE9-1|F1SNE9_PIG Isoform 1 of Coatomer subunit gamma OS=Sus scrofa OX=9823 GN=COPG2 PE=1 SV=2 CANONICAL=F1SNE9-1" }, "locus": { "chromosome": "18", "start_pos": 18331381, "end_pos": 18209411, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018023.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018023.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017538.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017538.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQ12", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ12" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" }, { "id": "R-SSC-6811434", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "resource": "Reactome", "description": "COPI-dependent Golgi-to-ER retrograde traffic" } ], "orthologs": [ { "uniprot_canonical_ac": "A2VE21-1", "protein_name": "Coatomer subunit gamma-2", "gene_name": "COPG2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFRHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWVNEAQEAASSDNIMVQYHALGVLYHLKKNDRLAVSKMLNKFTKSGLKSQFAYCMLIRIASRLLKENEEGHESPVFDFIESCLRNKHEMVIYEAASAIIHLPNCTARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIIHIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNENLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLATAPVFEQKAEITLVSTKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTNHIVFQFDCTNTLNDQLLEKVTVQVEPSEAYEVLCCVPAPSLPYNQPGVCYTLVRLPEDDSIAAAGTFSCTMKFTVRDCDPDTGVPTEEGYDDEYVLEDLEVTVSDHIQKVMKPNFAAAWEEVGNTFEKEETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALADGVTMQVTVRSKEGTPVDVILASVG", "length": 871 }, "evidence": [ { "id": "F1SNE9", "url": "https://omabrowser.org/oma/group/F1SNE9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4ABY2-1", "protein_name": "Coatomer subunit gamma-2", "gene_name": "Copg2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKFTKSGLKSQFAYCMLIRIASRLLKESEDGHESPLFDFIESCLRNKHEMVIYEAASAIIHLPNCTARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISLCQKYPRKHSVMMTFLSNMLRDDGGFEYKKAIVDCIISIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNESLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSIPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVTPKPEKLAPSRQDIFQEQLAAIPEFVNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTDHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLCCVPAPSLPYNQPGICYTLVRLPDEDPTA", "length": 715 }, "evidence": [ { "id": "F1SNE9", "url": "https://omabrowser.org/oma/group/F1SNE9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P32074-1", "protein_name": "Coatomer subunit gamma", "gene_name": "SEC21", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSAHTYKKFENSTSGDLPDKMTIYQDCMNTFNESPVNSKRCRLLISRLLRLLAQGETFPQNEATALFFSISKLFQHQNDPLRQAVYLAIKELSGISEDVLMATSSIMKDVQNGSDLIKPDAIRSLTYVLDESTAFSAERLLKSAVVSRHPSISSAALCTSYHLLPISEVTIRRFTNETQEAVLDLKQFPNQHGNSEYYPNSTYISQYHALGLLYQLKKTDKMALLKLVRHFSENNSMKNQLAKVELVKIVNDLIYRDPQLFSQFRPLLSDWLSNKFESVQLETAKLITSFATRNSRLVAPELYAAAISALQSLLTVPRVSSRFAALRILNRISMVSPEKIVVCNPELESLINDSNRNISTYAITTLLKTGTSKNISSLISTITNFIHDVSDDFKIIIIDAVRTLSLNFPQEWKSILNFLIDVLKNSEGGFKFKNSIVEALIDIVSFVPQSKELALENLCDFIEDCEFNEILVRILHLLGKEGPSAPNPSLYVRHIYNRVVLENSIIRSAAVVALSKFALTKNDPTLYESIISLLKRIANDKDDEVRDRATIALEFIDSARNKDDVIAQNLIESKYFYDIPSLESKLSSYISSNTDSFATAFDVNQVRKFTEDEMKAINLKRKQEQIFNQKSETTLDTTPEAESVPEKRADANSFAGPNLDDHQEDLLATKYADELLSIEQIKPFGQLVNSSRAISLTEPEAEFVVRGVKHLFKDNVVLQFNITNTLTDIALDNVSVVCTPEISDEAELEELFTLQVDRLLPSEEAACYVAFKKLDEIVMEGFLNNLTFTTKEINPDTNEPFDGDEGFQDEYEIDSIFLNAGDYVKSSFTGNFSATFDELPCEEVAVFNIQEDLSIQEVVDKIILNSSCLPVESTQFAPSDSNSHTLKLFGKSALTGSKVALQIKMIKSSKGLALKVHGKGEDSLLCSDLVNGLMQ", "length": 935 }, "evidence": [ { "id": "F1SNE9", "url": "https://omabrowser.org/oma/group/F1SNE9/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54HL0-1", "protein_name": "Coatomer subunit gamma", "gene_name": "copG", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MASRVQKKDDDESDFLFENLDKGQVIQEKRAFNESPIHPRKCSLVISQFLYLLSRGDSFTKTEATDIFFAATKLFQSKDIPLRRLMYLLLKELSTISQDAIIVISSLTKDMSHKIELYRANAIRILCKITDSSILPQIERYFKQSIVEKDPHVSSAALVSSIHLLKVCPEIVKRWANEVQEAISNKSNMVQYHALALLHRIKQHDRLAVSKLVSNLIKNSLRSPYAQSYLIRCCVEVIEETNTEDRIFREYIESCLRSKNEMVAYEAARSICTFKNVSNKEINSAVGVLQNFLNSTKPTLRFAAVRTLNKLAQTNPTAVIPCNLDMENLITDTNRSIATLAITTLLKVGNESNVERLIKQIANFLGDINDEFKIVVVDAITSLSQKFPKKYKHLIIFLNKILRDEGTLQLKQATLDAILTVVNNIPESKEIALTELCDYIEDCDFPDLSVQILHLIGQEGPLTSSPAQYMRYIYNRVLLDGGIIRAAAVTSIAKFGLLYEPMKEKVVILLQRCLLDEDDEVRDRATLYLKLFKENDVRYLNKVLMDDVPVPLNNLQKSLELYLHQGDFSEPFDIASVSTVVETYQSPLLGDGKSPFSTGASKKGDSVTGTPKSNNASNNNNNNEESSGPESFATKLSQIPQFSTFGKLLKSSEYIELTETETEYVVNCVKHIYREHIVFQFNCTNTLNEQQLSNVSVKMVPSDPKLLKYECSIPIDVLPYGEPQQCYVAIRYIPANGYPLCSFSNALKFKVKEVDPSTGELDEPGYDDQYSLERLEIVPKDFLNRAFVGNFSEEWKKMSEDTQLVQTFSLVGVKSIDEAVKQIIKTLGMAPAEKSEVVTPKSAKHILYLTGKSLNNQLIYVRARMKLDQSQTNTDVELTIKSDDESLNDFVISAFIEK", "length": 898 }, "evidence": [ { "id": "F1SNE9", "url": "https://omabrowser.org/oma/group/F1SNE9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8I0G5-1", "protein_name": "Coatomer subunit gamma", "gene_name": "gammaCOP", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNYFSLTSHKKHRGHPSAGPSNAYQNLEKTSVLQETRTFNETPVNPRKCIHILTKILYLINQGEQLVAREATDCFFAMTKLFQSKDVVLRRMVYLGIKELSSIAEDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDNTMLQAVERYMKQCIVDKNAAVSCAALVSSLRLANTAGDVVKRWANEAQEALNSDNIMVQYHALGLLYHIRKSDRLAVSKLVNKLTRGSLKSPYAVCMLIRIACKLIEEEDIPSEELSDSPLFTFIESCLRHKSEMVIYEAAHAIVNLKNTNPRMLSPAFSILQLFCSSPKATLRFAAVRTLNKVAMTHPAAVTTCNLDLEGLITDSNRSVATLAITTLLKTGAESSVERLMKQISTFVAEISDEFKVVVVQAICALCTKYPRKHTVLMNFLSGMLREEGGLEYKTSIVDTIITIIEENADAKESGLSHLCEFIEDCEHVSLAVRILHLLGKEGPFAATPSKYIRFIYNRVILESPIVRAAAVTAMAQFGASCPALLSNILVLLGRCQMDPDDEVRDRATYYLSILNSERPELYKNYIIERENCSLALLEKSLVEHLNGDVDTRFDISIVPKAAIVKPVIANDVMLVTSSAPRPPKITREEESAARLAQLPGIQVLGPIHRSTAPIQLTESETEYTVQCIKHIFGQHVVFQFDCLNTLSDQILENVRVELTLPEGFTTRAVIPCPKLPYNDLQTTFVIVEFPPDAANSIATFGATLRFVVKDCDPNTGEPESEEGYDDEYMLEDLELTVADQIQKTRKNNFQVSWDAADSEEWLQAEDTFVLSAVTTLQDAVNTIVKILGLGAANLSENVPEGTHLHTLLCSGTFRGGAEILVRAKLALSEGVTLNLTVRSTDQDVAELITAAIG", "length": 883 }, "evidence": [ { "id": "F1SNE9", "url": "https://omabrowser.org/oma/group/F1SNE9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9PUE4-1", "protein_name": "Coatomer subunit gamma-2", "gene_name": "copg2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKIIYLLNQGEHFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMANISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDTTMLQAIERYMKQAIVDKVPSVSSSALVSSLHMVKMSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHLRKNDRLAVTKMLNKFTKSGLKSPFAYCMMIRIASKLLEETEGGHDSPLFDFIESCLRNKHEMVVYEAASAIVHMPNCTARELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMNFLSNMLRDDGGFEYKRAIVDCIISIIEENPESKETGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPTPSKYIRFIFNRVVLESEAVRAAAVSALAKFGAQNDDLLPSVLVLMQRCMMDSDDEVRDRATFYMNVLQQKQKALNAAYIFNGLSVSVLGLEKSLHQYTLEPSEKPFDMKTVPLATAPITEHKTEIAPVATSKLPEKLAPSRQDIYQEQLSAIPEFQGLGPLFKSSEPVQLTEAETEYVVRCIKHTFANHMIFQFDCTNTLNDQLLQKVLVQMEPSESYEVLHYVPAANLPYSQPGSCYSLVRLPEDDPTAVSCTFSCTMKYLVRDCDPNTGEPDDDGYDDEYVLEDLEVTVADHIQKVLKPNFAAAWDEVGDECEKEETFALATVRTLDEAVNNIVSFLGMQPCERSDKVPENKNSHVLFLAGVFRGGHDVLVRARLALADGVTIQVTVRSTDDNVVDVILASVG", "length": 873 }, "evidence": [ { "id": "F1SNE9", "url": "https://omabrowser.org/oma/group/F1SNE9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9QXK3-1", "protein_name": "Coatomer subunit gamma-2", "gene_name": "Copg2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTMEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAVERYMKQAIVDKVSSVASSALVSSLHMMKISYDVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKFTKSGLKSQFAYCMLIRIASRLLKESEDGHESPLFDFIESCLRNKHEMVIYEAASAIIHLPNCTARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCHKYPRKHSVMMTFLSNMLRDDGGFEYKKAIVDCIISIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNESLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSIPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKSEITLVTPKPEKLAPSRQDIFQEQLAAIPEFMNLGPLFKSSEPVQLTEAETEYFVRCVKHMFTDHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLCCIPAPSLPYNQPGICYTLVRLPDEDPTAVAGTFSCTMKFTVRDCDPNTGVPDEDGYDDEYVLEDLEVTVSDHIQKILKPNFAAAWEEVGDAFEKEETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALADGVTMQVTVRSKERTPVDVILASVG", "length": 871 }, "evidence": [ { "id": "F1SNE9", "url": "https://omabrowser.org/oma/group/F1SNE9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UBF2-1", "protein_name": "Coatomer subunit gamma-2", "gene_name": "COPG2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIKKFDKKDEESGSGSNPFQHLEKSAVLQEARIFNETPINPRRCLHILTKILYLLNQGEHFGTTEATEAFFAMTRLFQSNDQTLRRMCYLTIKEMATISEDVIIVTSSLTKDMTGKEDVYRGPAIRALCRITDGTMLQAIERYMKQAIVDKVSSVSSSALVSSLHMMKISYDVVKRWINEAQEAASSDNIMVQYHALGVLYHLRKNDRLAVSKMLNKFTKSGLKSQFAYCMLIRIASRLLKETEDGHESPLFDFIESCLRNKHEMVIYEAASAIIHLPNCTARELAPAVSVLQLFCSSPKPALRYAAVRTLNKVAMKHPSAVTACNLDLENLITDSNRSIATLAITTLLKTGSESSVDRLMKQISSFVSEISDEFKVVVVQAISALCQKYPRKHSVMMTFLSNMLRDDGGFEYKRAIVDCIISIVEENPESKEAGLAHLCEFIEDCEHTVLATKILHLLGKEGPRTPVPSKYIRFIFNRVVLENEAVRAAAVSALAKFGAQNESLLPSILVLLQRCMMDTDDEVRDRATFYLNVLQQRQMALNATYIFNGLTVSVPGMEKALHQYTLEPSEKPFDMKSIPLAMAPVFEQKAEITLVATKPEKLAPSRQDIFQEQLAAIPEFLNIGPLFKSSEPVQLTEAETEYFVRCIKHMFTNHIVFQFDCTNTLNDQLLEKVTVQMEPSDSYEVLSCIPAPSLPYNQPGICYTLVRLPDDDPTAVAGSFSCTMKFTVRDCDPNTGVPDEDGYDDEYVLEDLEVTVSDHIQKVLKPNFAAAWEEVGDTFEKEETFALSSTKTLEEAVNNIITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALADGVTMQVTVRSKERTPVDVILASVG", "length": 871 }, "evidence": [ { "id": "F1SNE9", "url": "https://omabrowser.org/oma/group/F1SNE9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" }, { "name": "COPI vesicle coat", "id": "GO:0030126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030126", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" }, { "name": "growth cone", "id": "GO:0030426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030426", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" }, { "name": "intra-Golgi vesicle-mediated transport", "id": "GO:0006891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006891", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" }, { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" }, { "name": "protein secretion", "id": "GO:0009306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009306", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" }, { "name": "organelle transport along microtubule", "id": "GO:0072384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072384", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "F1SNE9", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 543, "end_pos": 545, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" }, { "id": "PF01602", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01602" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Clathrin/coatomer adaptor adaptin-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 538, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" }, { "id": "PF08752", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08752" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Coatomer gamma subunit appendage Ig-like subdomain", "eco_id": "ECO_0000259", "start_pos": 611, "end_pos": 756, "start_aa": "Phe", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNE9" }, { "id": "PF16381", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16381" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Coatomer subunit gamma C-terminal", "eco_id": "ECO_0000259", "start_pos": 758, "end_pos": 870, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 279, "end_pos": 281 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 35, "end_pos": 37 }, { "start_pos": 543, "end_pos": 545 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SID8-1", "uniprot_ac": "F1SID8", "uniprot_id": "F1SID8_PIG", "mass": { "chemical_mass": 182746.0, "monoisotopic_mass": 182746.0 }, "refseq": { "ac": "XP_020940833", "name": "MAP kinase-activating death domain protein isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940833" }, "gene_names": [ { "name": "MADD", "type": "recommended", "evidence": [ { "id": "F1SID8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ] }, { "name": "NR1H3", "type": "recommended", "evidence": [ { "id": "F1SID8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ] }, { "name": "MADD", "type": "synonym", "evidence": [ { "id": "XP_020940833", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940833" }, { "id": "F1SID8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ] } ], "protein_names": [ { "name": "MAP kinase-activating death domain protein", "type": "recommended", "evidence": [ { "id": "F1SID8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#names_and_taxonomy" } ] }, { "name": "MAP kinase-activating death domain protein isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020940833", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940833" } ] }, { "name": "Rab3 GDP/GTP exchange factor", "type": "synonym", "evidence": [ { "id": "F1SID8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#names_and_taxonomy" } ] }, { "name": "Rab3 GDP/GTP exchange protein", "type": "synonym", "evidence": [ { "id": "F1SID8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Guanyl-nucleotide exchange factor that regulates small GTPases of the Rab family. Converts GDP-bound inactive form of RAB27A and RAB27B to the GTP-bound active forms. Converts GDP-bound inactive form of RAB3A, RAB3C and RAB3D to the GTP-bound active forms, GTPases involved in synaptic vesicle exocytosis and vesicle secretion. Plays a role in synaptic vesicle formation and in vesicle trafficking at the neuromuscular junction. Involved in up-regulating a post-docking step of synaptic exocytosis in central synapses. Probably by binding to the motor proteins KIF1B and KIF1A, mediates motor-dependent transport of GTP-RAB3A-positive vesicles to the presynaptic nerve terminals. Plays a role in TNFA-mediated activation of the MAPK pathway, including ERK1/2. May link TNFRSF1A with MAP kinase activation. May be involved in the regulation of TNFA-induced apoptosis.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQM2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQM2#function" }, { "database": "UniProtKB", "id": "ARBA00060181", "url": "https://www.uniprot.org/uniprotkb/ARBA00060181#function" }, { "database": "UniProtKB", "id": "A0A286ZXX6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXX6#function" }, { "database": "UniProtKB", "id": "A0A286ZYC5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYC5#function" }, { "database": "UniProtKB", "id": "A0A287A5G0", "url": "https://www.uniprot.org/uniprotkb/A0A287A5G0#function" }, { "database": "UniProtKB", "id": "A0A287BB16", "url": "https://www.uniprot.org/uniprotkb/A0A287BB16#function" }, { "database": "UniProtKB", "id": "A0A287BF61", "url": "https://www.uniprot.org/uniprotkb/A0A287BF61#function" }, { "database": "UniProtKB", "id": "A0A287B9E9", "url": "https://www.uniprot.org/uniprotkb/A0A287B9E9#function" }, { "database": "UniProtKB", "id": "A0A287BS40", "url": "https://www.uniprot.org/uniprotkb/A0A287BS40#function" }, { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8#function" }, { "database": "UniProtKB", "id": "A0ABB5UR76", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UR76#function" }, { "database": "UniProtKB", "id": "A0ABB5UPT6", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPT6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MADD", "url": "https://www.uniprot.org/uniprotkb/F1SID8", "locus": { "chromosome": "2", "start_pos": 15270783, "end_pos": 15315459, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013235", "url": "https://www.ensembl.org/id/ENSSSCG00000013235" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013235", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013235", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000013241", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013241", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514701", "url": "https://www.ncbi.nlm.nih.gov/gene/100514701", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057469", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057469", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TKILCLW", "url": "https://omabrowser.org/oma/group/TKILCLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13008", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13008", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13008:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13008:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23629", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23629", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25328", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25328", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26658", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26658", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5357905", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5357905", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020940833", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940833", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZQM2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXX6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZYC5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZYC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYC5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5G0", "url": "https://www.uniprot.org/uniprotkb/A0A287A5G0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5G0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5G0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B9E9", "url": "https://www.uniprot.org/uniprotkb/A0A287B9E9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B9E9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B9E9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB16", "url": "https://www.uniprot.org/uniprotkb/A0A287BB16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BB16-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BB16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BF61", "url": "https://www.uniprot.org/uniprotkb/A0A287BF61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BF61-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BF61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS40", "url": "https://www.uniprot.org/uniprotkb/A0A287BS40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS40-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS40-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPT6", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPT6-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPT6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UR76", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UR76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UR76-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UR76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SID8-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIELWNKHQEVKKHKALEKQRPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1643, "header": "tr|F1SID8-1|F1SID8_PIG Isoform 1 of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=6 CANONICAL=F1SID8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0A286ZQM2-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIGPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSTVVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1588, "header": "tr|A0A286ZQM2-1|F1SID8_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=3 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15271736, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037410.4", "url": "https://www.ensembl.org/id/ENSSSCT00000037410.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033897.3", "url": "https://www.ensembl.org/id/ENSSSCP00000033897.3" } ] } }, { "isoform_ac": "A0A286ZXX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0A286ZXX6-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIGPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGLLYTCI", "length": 1238, "header": "tr|A0A286ZXX6-1|F1SID8_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=2 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15292005, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047415.4", "url": "https://www.ensembl.org/id/ENSSSCT00000047415.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036475.3", "url": "https://www.ensembl.org/id/ENSSSCP00000036475.3" } ] } }, { "isoform_ac": "A0A286ZYC5-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0A286ZYC5-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIGPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSTVVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1545, "header": "tr|A0A286ZYC5-1|F1SID8_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=2 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15271736, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044790.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044790.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036458.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036458.2" } ] } }, { "isoform_ac": "A0A287A5G0-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0A287A5G0-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIGPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSTVVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQVFIELNHIKKCNTVRGVFVLEEFGRPGPLLPSGKETPKSVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1561, "header": "tr|A0A287A5G0-1|F1SID8_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=2 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15271736, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061456.4", "url": "https://www.ensembl.org/id/ENSSSCT00000061456.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039001.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039001.2" } ] } }, { "isoform_ac": "A0A287B9E9-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0A287B9E9-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIGPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSTVVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQERKVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1632, "header": "tr|A0A287B9E9-1|F1SID8_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=1 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15271736, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051252.2", "url": "https://www.ensembl.org/id/ENSSSCT00000051252.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053153.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053153.1" } ] } }, { "isoform_ac": "A0A287BB16-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0A287BB16-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIGPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSTVVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1608, "header": "tr|A0A287BB16-1|F1SID8_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=3 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15271736, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037910.4", "url": "https://www.ensembl.org/id/ENSSSCT00000037910.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053706.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053706.3" } ] } }, { "isoform_ac": "A0A287BF61-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0A287BF61-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIGPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSTVVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQERKVWTHMAVTQTSELQRRD", "length": 1576, "header": "tr|A0A287BF61-1|F1SID8_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=3 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15273982, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052652.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052652.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054962.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054962.3" } ] } }, { "isoform_ac": "A0A287BS40-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0A287BS40-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIGPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1625, "header": "tr|A0A287BS40-1|F1SID8_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=3 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15271736, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045192.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045192.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058943.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058943.3" } ] } }, { "isoform_ac": "A0ABB5UPT6-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0ABB5UPT6-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIGPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSTVVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGLHQRHV", "length": 1258, "header": "tr|A0ABB5UPT6-1|A0ABB5UPT6_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=1 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15290080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107009.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107009.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081415.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081415.1" } ] } }, { "isoform_ac": "A0ABB5UR76-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#A0ABB5UR76-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIELWNKHQEVKKHKALEKQRPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQVWTHMAVTQTSELQRRD", "length": 1587, "header": "tr|A0ABB5UR76-1|A0ABB5UR76_PIG Computationally mapped isoform of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=1 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15273982, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107056.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107056.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081458.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081458.1" } ] } }, { "isoform_ac": "F1SID8-1", "url": "https://www.uniprot.org/uniprotkb/F1SID8/entry#F1SID8-1", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGAGSRGKEGPRATCVSEEVSTESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPISGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLSGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIDDLQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTIIHGAGSEPADSVEMDNKAAVGISKPLATMPPSMGKLNVDRHQAEIGEGSVRRRTYDSPHFEPQCGFPPEEDDDEQGESYTPRFSQHANGNRAQRLLRPNSLKLASDSDAESDSRASSPTSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNIPVGKDPGLAGRGDPKAVAQLRVPQLGPWAPSATGKSPKELDTRSLKEENFVASIELWNKHQEVKKHKALEKQRPEVIKPTFDLGETEEKKSQVSADSGVSLTSGSQRTDPDSVIGVSPAVMIRSSSQDSEVSNSSGETLGADSDLSSNAGDGPGGEGSARLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLMGSPVRSSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHSQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1643, "header": "tr|F1SID8-1|F1SID8_PIG Isoform 1 of MAP kinase-activating death domain protein OS=Sus scrofa OX=9823 GN=MADD PE=1 SV=6 CANONICAL=F1SID8-1" }, "locus": { "chromosome": "2", "start_pos": 15311650, "end_pos": 15271736, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014455.6", "url": "https://www.ensembl.org/id/ENSSSCT00000014455.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014063.6", "url": "https://www.ensembl.org/id/ENSSSCP00000014063.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQM2", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5357905", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5357905", "resource": "Reactome", "description": "Regulation of TNFR1 signaling" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7G7G9-1", "protein_name": "MAP kinase-activating death domain protein", "gene_name": "Madd", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVQKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRMPKEKVEGGAGPRGKEGAHVTCASAEVGTESSESSSTLQPPSADSTPDLNQSPRGKRHAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGIPRGVQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPVSGQKRVDIEVLPQELQPALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLLGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPSNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDGSSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVEIDELQTRKEGEEPGPDSETSQGNPPLRSSSSTAASSSPSSISHGAHSEHADSTEMDDKAAAGSSKPLTPVPPGICKSTVDRRQTETGEGSVCQRTYDNPYFEPQYGFPPEEDDDEQGESYTPRFSQHVSGNRAQKLLRPNSLKLASDSDAESDSRASSPNSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRAVQSEDDARQDVIQDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTENINTPVGKDPGLAGRGDPKAMAQLRVPQLGPRAPSATGKGPKELDTRSLKEENFVASVELWNKHQEVKKQKALEKQRPEVIKPAFDLGETEEKKSQISADSGVSLTSASQRTDQDSVISVSPAVMIRSSSQDSEVSTVVGVSNSSGETLGADSDLSSNAGDGPGGEGSAHLTSSRATLSDSEIETNSATSTIFGKAHSLKPKEKLAGSPVRSSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLTNLSGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHNQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRAPPRPVSS", "length": 1646 }, "evidence": [ { "id": "F1SID8", "url": "https://omabrowser.org/oma/group/F1SID8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9S059-1", "protein_name": "MAP kinase-activating death domain protein", "gene_name": "MADD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVQKKKSCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHSEFPLPPDVVFFCQPEGCLSVRQRRMTLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRVPKEKGEAGPGSRGKEGPRAPFVSEEVGPKTSESGPSLQPPSADSTPDVSQSPRARRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGLPRGIQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPVSGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLLGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSPNVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSGSQLAEALSVPPERDSDSDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVAIEELQNQKEAEEPGPDGESSQENPPLRSSPSTTVSSSPSTIIHGASSEPVDSAETDDKAAGGVPKSVPTVPPGMGKCSMDRHQTETGEGSVRQRASDSPCLQPQCGFPPEEDDEQGESYTPRFSQHVSGHRAQKLLRPSSLKLASDSDAESDSRASSPTSTVSSNSTEGFGGIMSLASSLYRNHSTSFSLSNLTLPTKGAREKSTPFPSLKVFGLNTLMEIVTEAGPGSGEGHRRALVDQKSSVIKHSPTVKREPPSPQGRASNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRTVQSEDEARQDVIPDVEISRKVYKGMLDLLKCTVLSLEQSFAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESISTPVGKDPGLAGRGDPKAMAQLRVPQLGPLAPSAPGKSPKELDTRSLKEENFVASIELWSKHQEVKNQKALEKQRPEVIKPTFDLGETDEKKSQVSADSGVSLTSGSQRTDPDSVISVSPAVMIRSSSQDSEVSTVVSNSSGETLGADSDLSSSAGDGPGGEGSAYLAGSRGTLSDSEIETNSATSAIFGKAHSLKPSVKEKLVGSPVRFSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHNQERKVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1649 }, "evidence": [ { "id": "F1SID8", "url": "https://omabrowser.org/oma/group/F1SID8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O08873-1", "protein_name": "MAP kinase-activating death domain protein", "gene_name": "Madd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVQKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRMPKEKAEGGAGPRGKEGAHAPCASEEAATESSESGSTLQPPSADSTPDVNQSPRGKRRAKAGNRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKPGIPRGVQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPVSGQKRVDIEVLPQEVQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQETPLLLGRFSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPSNYAFQRIHNNTFDPALIGDKPKWYAHQLQPIHYRVYDSNSQLAEALSVPPERDSESDPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVEIDELQPQKEGEEPGPDSENSQENLPLRSSSSTTASSSPSTIVHGAHSEPADSTEVGDKAATGISKPLPPVPPSICKSTVDRRQTETGEGSVCQRTYDHPYFEPQYGSPAEEDDDEQGESYTPRFSQHASGSRAQKLLRPNSLKLASDSDAESDSRASSPNSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLSRAVQSEDDARQDVIQDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTENVNTPVGKDPGLAGRGDPKAMAQLRVPQLGPRAPSATGRGPKELDTRSLKEENFVASVGPEVIKPVFDLGETEEKKSQISADSGVSLASASQRTDQDSVIGVSPAVMIRSSSQDSEVSNSSGETLGADSDLSSNAGDGPGGEGSAHLASSRATLSDSEIETNSATSTIFGKAHSLKPKEKPASSPVRSSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHVGLVYSQQINEVLDQLTNLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHNQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVRSSEEDLRTPPRPVSS", "length": 1602 }, "evidence": [ { "id": "F1SID8", "url": "https://omabrowser.org/oma/group/F1SID8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80U28-1", "protein_name": "MAP kinase-activating death domain protein", "gene_name": "Madd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVQKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHPEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRMPKEKVEGGAGPRGKEGAHTSGASEEAATGSSESGSTLQPPSADSTPDINQSPWGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGIPRGVQRDTMWRIFTGSLLVEEKSSALLQDLREIEAWIYRLLRSPVPVSGQKRVDIEVLPQELQQALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLLGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPSNYAFQRIHNNTFDPALIGDKPKWYAHQLQPIHYRVYDGNSQLAEALSVPPERDSDSDPTEDSGSDSQDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVEIDELQPQKEGEEPGPDSENSQENPPLRSSSSTTASSSPSTVVHSAHSEAADSTEMGDKATAGISKPLPPVPPSICKSTVDRRQTETGEGSVCQRTYDNPYFEPQYGFPPEEDEEEQGESYTPRFSQHVSGSRAQKLLRPNSLKLASDSDAESDSRASSPNSTVSNNSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKTTPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPSSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRAVQSEDDARQDVIQDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTENVNTPVGKDPGLAGRGDPKAMAQLRVPQLGPRAPSATGKGPKELDTRSLKEENFVASVELWNKHQEVKKQKALEKQRPEGIKPVFDLGETEEKKSQMSADSGVSLTSASQRTDQDSVIGVSPAVMIRSSSQDSEVSTVSNSSGETLGADSDLSSNAGDGPGGEGSAHLASSRATLSDSEIETNSATSAIFGKAHSLKPKEKPAGSPIRSSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSLSKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQVNEVLDQLNSLNGRDLSIRSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDMKTGEGGLLQVTLEGINLKFMHNQFLKLKKW", "length": 1577 }, "evidence": [ { "id": "F1SID8", "url": "https://omabrowser.org/oma/group/F1SID8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WXG6-1", "protein_name": "MAP kinase-activating death domain protein", "gene_name": "MADD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVQKKKFCPRLLDYLVIVGARHPSSDSVAQTPELLRRYPLEDHTEFPLPPDVVFFCQPEGCLSVRQRRMSLRDDTSFVFTLTDKDTGVTRYGICVNFYRSFQKRISKEKGEGGAGSRGKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQSPRGKRRAKAGSRSRNSTLTSLCVLSHYPFFSTFRECLYTLKRLVDCCSERLLGKKLGIPRGVQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLLRSPVPVSGQKRVDIEVLPQELQPALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVWLVDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLEKFHEGQEIPLLLGRPSNDLQSTPSTEFNPLIYGNDVDSVDVATRVAMVRFFNSANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAEKLARTQAVEYFGEWILNPTNYAFQRIHNNMFDPALIGDKPKWYAHQLQPIHYRVYDSNSQLAEALSVPPERDSDSEPTDDSGSDSMDYDDSSSSYSSLGDFVSEMMKCDINGDTPNVDPLTHAALGDASEVEIDELQNQKEAEEPGPDSENSQENPPLRSSSSTTASSSPSTVIHGANSEPADSTEMDDKAAVGVSKPLPSVPPSIGKSNVDRRQAEIGEGSVRRRIYDNPYFEPQYGFPPEEDEDEQGESYTPRFSQHVSGNRAQKLLRPNSLRLASDSDAESDSRASSPNSTVSNTSTEGFGGIMSFASSLYRNHSTSFSLSNLTLPTKGAREKATPFPSLKVFGLNTLMEIVTEAGPGSGEGNRRALVDQKSSVIKHSPTVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGWLNMKKVRRLLESEQLRVFVLSKLNRMVQSEDDARQDIIPDVEISRKVYKGMLDLLKCTVLSLEQSYAHAGLGGMASIFGLLEIAQTHYYSKEPDKRKRSPTESVNTPVGKDPGLAGRGDPKAMAQLRVPQLGPRAPSATGKGPKELDTRSLKEENFIASIELWNKHQEVKKQKALEKQRPEVIKPVFDLGETEEKKSQISADSGVSLTSSSQRTDQDSVIGVSPAVMIRSSSQDSEVSTVVSNSSGETLGADSDLSSNAGDGPGGEGSVHLASSRGTLSDSEIETNSATSTIFGKAHSLKPSIKEKLAGSPIRTSEDVSQRVYLYEGLLGRDKGSMWDQLEDAAMETFSISKERSTLWDQMQFWEDAFLDAVMLEREGMGMDQGPQEMIDRYLSLGEHDRKRLEDDEDRLLATLLHNLISYMLLMKVNKNDIRKKVRRLMGKSHIGLVYSQQINEVLDQLANLNGRDLSIWSSGSRHMKKQTFVVHAGTDTNGDIFFMEVCDDCVVLRSNIGTVYERWWYEKLINMTYCPKTKVLCLWRRNGSETQLNKFYTKKCRELYYCVKDSMERAAARQQSIKPGPELGGEFPVQDLKTGEGGLLQVTLEGINLKFMHNQVFIELNHIKKCNTVRGVFVLEEFVPEIKEVVSHKYKTPMAHEICYSVLCLFSYVAAVHSSEEDLRTPPRPVSS", "length": 1647 }, "evidence": [ { "id": "F1SID8", "url": "https://omabrowser.org/oma/group/F1SID8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VXY2-1", "protein_name": "MAP kinase-activating death domain protein", "gene_name": "Rab3-GEF", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDQQKASLCPRLVDYMAIVGAHTTPPMPKGLQGLKAPPVQVPDLLRRYPPSDHADFPLPLDMVYFCQPEGCTSVGPRRTGSAIRDMTSFVFALTDKDSGKTRYGICVNFYRPIERPSSAAGSAGAGNDRPGNGGPGGHGGGAGGGAGGGGRGGRRSSAFRRESWRKSMERSSDSAFSSDYRSNVAPSDSDRELTSRRDSDQQRLHSHHSHHQPHHPSASPAVPKLGLMAPSADSESGGSHSPSPRASRKRTKLRNQSLTSLCIISHHPFFTTFRECLFILKKLIDACNESSSPKRVGASQKINRDNVWTVLTGHVSDATPSIVLHDVREIETWILRLLSTPVPVPGSTRVEVEVLSPTVHEPLLFALPDHTRFSLVDFPLHLPLELLGVETCLKVWTLIMQENKVLFQSRDYNALSMSVMAFVTMLYPLEYMFPVIPLLPTCLSCAEQLLLAPTPFVIGVPASFLVYKKNFRLPDDIWVVDLDSTKLTPPTGGYEEIPPLPEPEGTILKNHLKQALTSMTATNTAVSSQQLLPSVRDSLQEPPLLGVSQVRLPLQTPPHSAQASQRNSMSAQGTISSRQPSPMNSPALNPFVYGTDVDSVDVATRVAMVRFFNAQNTLANFAEHTRTLRLYPRPVVAFQINSFLRSRPRASQFLNQFARTQAVEFLAEWSLTPTNVAFLRVQTGVMDPMQVGDKPKWFAHALTPIRFSVWDDGSSLNGALRSLKQLECQPTDESGSDSEGADSSSSSYSSLSDFVSEMASSDLSPSLHDVFGSYNRPHVVPQTLSSNLDPALVYHPPSKLQYPEGIADAVASKEEEDEERADSPVSSSSSRSDLSSPSFNRDSEFDFQPKGGQTLGSTTVGSGAAAPSFELATPLAMRLEATIKMASIEQESDTVSTATGKTIAAGSKLQRHPSDSESRPEKKIPPPLTPPVKQPGVSNILARTGSSGSSSSSPGRQSSQSSLFENFASHAKELVRETTRQSSQEGLLAHVDKFTLHAKKAAGEASKQALEVSKQAAGVSKNTLEDLTYVGKSTLGDLTKTAKEAATKKGIIKIEEHSAGGAGPPPKSPGSQLATHKQVQQSGGQGGGNNFFSAIGTDFNGLASSTSTMFSGMFGKKSQQKQVPVQQKQPNVSAGKAKSGINFDPFPGRKGLVERTPLIKHSGPRQTQEELTRQQNQERSHSNAENQTFLKDVTNQVLAGEGVGWLKLNRFKKLMEDESYRTLVLSKLNKTLDKKIAPDDHIDDVCVTKPVWKGMLKCIQAIAGGLDVTFANFGLGGMASVFQLMEVAHTHYWSKEINEGSDMSSSLLSSHAASPMGSRENLRSPSSPNGSHSALGSEWASPQESRKSSTQLAHGGPGGSHSGAPINRRLSSADSQDGQSTTEMFKDMLSQKRSALKNMLTSFDSDTTTSKDSKKSSGNLWSGKSTLSAGFRYTGGHLINTSSSPSPDSPRVYLFEGLLGKDRLNLWNQMQFWEDAFLDAVSQERDMIGMDQGPIEMMERYKSLSESERKRLEHDEDRLLSTMLYNLTAILVMLNVAKDEIRRKIRRLLGKSHIGLVYSQEVHNVVDQINNLNGNDIDLKPLGSRLLHRQSFTVHQGTDVNGPLRFMEVRDDGLVLRSVDGTIVERWWYERLVNMTYSPKTKLLCLWRRNGGQTQLHKYYTRKCKELYNCIKEAMERGGTPTNVPELGGEFPVQDMNTGEGGLLQVCLEGVGLLFSNSKFFVRLDHIRKCFTQKGGIFVLEEYNPKTRNLIQRKYQSSMSDQICYSVLCVFSYVAAGQDQKKNPVVITPQIQDIHAQQKQKHQQQQQHQQPQQQQQPHQTTTQQNQPTAVASAVPTTTAPAGQVNPNRMTAKSQAGSISIRHTVPMQKPTITMSTVQPQARMPAQVATASVPVTVPVPPTPAPPTSNPAKLPQLPPRVPSQPSTESLASISSPPPKLRTPMSAPPGPPPAIPPRTGAISRSGSVPAARSFVRQASANSTPPQYTPQPPPPFVIPKRHSGLARASTLSSSTSPSMSSSSASNHPGHSQSQQRASHGSVAAVLQSMPEAEPGYGSGSGSISGSSSGSGSASGSIASASPQAHRKH", "length": 2084 }, "evidence": [ { "id": "F1SID8", "url": "https://omabrowser.org/oma/group/F1SID8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ], "pmid": "" }, { "name": "regulation of Rab protein signal transduction", "id": "GO:0032483", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032483", "evidence": [ { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ], "pmid": "" }, { "name": "regulation of apoptotic process", "id": "GO:0042981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042981", "evidence": [ { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F1SID8", "url": "https://www.uniprot.org/uniprotkb/F1SID8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1199, "end_pos": 1201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1481, "end_pos": 1483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1497, "end_pos": 1499, "annotation": "n_glycosylation_sequon" }, { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 837, "end_pos": 839, "annotation": "n_glycosylation_sequon" }, { "start_pos": 838, "end_pos": 840, "annotation": "n_glycosylation_sequon" }, { "start_pos": 856, "end_pos": 858, "annotation": "n_glycosylation_sequon" }, { "start_pos": 865, "end_pos": 867, "annotation": "n_glycosylation_sequon" }, { "start_pos": 937, "end_pos": 939, "annotation": "n_glycosylation_sequon" }, { "start_pos": 984, "end_pos": 986, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SID8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SID8" }, { "id": "PS50211", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 565, "start_aa": "Tyr", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1199, "end_pos": 1201 }, { "start_pos": 1481, "end_pos": 1483 }, { "start_pos": 1497, "end_pos": 1499 }, { "start_pos": 154, "end_pos": 156 }, { "start_pos": 171, "end_pos": 173 }, { "start_pos": 837, "end_pos": 839 }, { "start_pos": 838, "end_pos": 840 }, { "start_pos": 856, "end_pos": 858 }, { "start_pos": 865, "end_pos": 867 }, { "start_pos": 937, "end_pos": 939 }, { "start_pos": 984, "end_pos": 986 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIG9-1", "uniprot_ac": "F1SIG9", "uniprot_id": "F1SIG9_PIG", "mass": { "chemical_mass": 62293.0, "monoisotopic_mass": 62293.0 }, "refseq": {}, "gene_names": [ { "name": "PLEKHA8", "type": "recommended", "evidence": [ { "id": "F1SIG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain containing A8", "type": "synonym", "evidence": [ { "id": "F1SIG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIG9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLEKHA8", "url": "https://www.uniprot.org/uniprotkb/F1SIG9", "locus": { "chromosome": "18", "start_pos": 42820921, "end_pos": 42902867, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016682", "url": "https://www.ensembl.org/id/ENSSSCG00000016682" } ] } } ], "crossref": [ { "id": "F1SIG9", "url": "https://alphafold.ebi.ac.uk/entry/F1SIG9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016682", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016682", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01247", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01247", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514381", "url": "https://www.ncbi.nlm.nih.gov/gene/100514381", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014830", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014830", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036497", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036497", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10219:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10219:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08718", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08718", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660499", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660499", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9845576", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9845576", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZUP6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZUP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATB4", "url": "https://www.uniprot.org/uniprotkb/A0A287ATB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEA5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIG9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRERAPGRVGRGFRWRAVAPPATRRPACGPVVAAAAPRPHPVLWPPCGQRAGPAVRGHGSAAPSRVQAAAVTPPPGPGCEARGASPRCKGSIQMAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLVALGSAKACLTDSRTQKEKEFAENTENLKTKMSELRLYCDLLVQQVDKTKEVTTTGVSSSEEGIDVGTLLKSTCNTFLKTLEECMQIANAAFTSELLYRTPPGSPQLAMLKSNKMKHPIVPIHNSLERQMELNSCENGSVNMEINDDEEILMKNKSSLCLKPAETDCSLSSEETTDDNITGEMMKEDGEENLGNHDSSLVQPESHSSRSSPEPHWEEGQEVIPTFFSTMNTSFSDIELLEDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFLKGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRAAPSYEDFVAALTIKEGDHQKAAFSVGMQRDLSLYLPAMEKQLAILDTLYEIHGLESDEVV", "length": 566, "header": "tr|F1SIG9-1|F1SIG9_PIG Isoform 1 of Pleckstrin homology domain containing A8 OS=Sus scrofa OX=9823 GN=PLEKHA8 PE=4 SV=4 CANONICAL=F1SIG9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZUP6-1", "url": "https://www.uniprot.org/uniprotkb/F1SIG9/entry#A0A286ZUP6-1", "sequence": { "sequence": "MEGVLYKWTNYLSGWQPRWFLLCGGILSYYDSPEDAWKGCKGSIQMAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLVALGSAKACLTDSRTQKEKEFAENTENLKTKMSELRLYCDLLVQQVDKTKEVTTTGVSSSEEGIDVGTLLKSTCNTFLKTLEECMQIANAAFTSELLYRTPPGSPQLAMLKSNKMKHPIVPIHNSLERQMELNSCENGSVNMEINDDEEILMKNKSSLCLKPAETDCSLSSEETTDDNITVQGEMMKEDGEENLGNHDSSLVQPESHSSRSSPEPHWEEGQEVIPTFFSTMNTSFSDIELLEDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFLKGFLTEVKNGEKDIQTALTNLTENT", "length": 441, "header": "tr|A0A286ZUP6-1|F1SIG9_PIG Computationally mapped isoform of Pleckstrin homology domain containing A8 OS=Sus scrofa OX=9823 GN=PLEKHA8 PE=4 SV=2 CANONICAL=F1SIG9-1" }, "locus": { "chromosome": "18", "start_pos": 42900783, "end_pos": 42836080, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060505.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060505.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035358.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035358.2" } ] } }, { "isoform_ac": "A0A287ATB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIG9/entry#A0A287ATB4-1", "sequence": { "sequence": "MEGVLYKWTNYLSGWQPRWFLLCGGILSYYDSPEDAWKGCKGSIQMAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLVALGSAKACLTDSRTQKEKEFAENTENLKTKMSELRLYCDLLVQQVDKTKEVTTTGVSSSEEGIDVGTLLKSTCNTFLKTLEECMQIANAAFTSELLYRTPPGSPQLAMLKSNKMKHPIVPIHNSLERQMELNSCENGSVNMEINDDEEILMKNKSSLCLKPAETDCSLSSEETTDDNITVQGEMMKEDGEENLGNHDSSLVQPESHSSRSSPEPHWEEGQEVIPTFFSTMNTSFSDIELLEDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFLKGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFAGHRHVR", "length": 461, "header": "tr|A0A287ATB4-1|F1SIG9_PIG Computationally mapped isoform of Pleckstrin homology domain containing A8 OS=Sus scrofa OX=9823 GN=PLEKHA8 PE=4 SV=2 CANONICAL=F1SIG9-1" }, "locus": { "chromosome": "18", "start_pos": 42900783, "end_pos": 42820921, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065209.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065209.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047189.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047189.2" } ] } }, { "isoform_ac": "A0A5G2QEA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIG9/entry#A0A5G2QEA5-1", "sequence": { "sequence": "MAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLVALGSAKACLTDSRTQKEKEFAENTENLKTKMSELRLYCDLLVQQVDKTKEVTTTGVSSSEEGIDVGTLLKSTCNTFLKTLEECMQIANAAFTSELLYRTPPGSPQLAMLKSNKMKHPIVPIHNSLERQMELNSCENGSVNMEINDDEEILMKNKSSLCLKPAETDCSLSSEETTDDNITGEMMKEDGEENLGNHDSSLVQPESHSSRSSPEPHWEEGQEVIPTFFSTMNTSFSDIELLEDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFLKGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRAAPSYEDFVAALTIKEGDHQKAAFSVGMQRDLSLYLPAMEKQLAILDTLYEIHGLESDEVV", "length": 473, "header": "tr|A0A5G2QEA5-1|F1SIG9_PIG Computationally mapped isoform of Pleckstrin homology domain containing A8 OS=Sus scrofa OX=9823 GN=PLEKHA8 PE=4 SV=2 CANONICAL=F1SIG9-1" }, "locus": { "chromosome": "18", "start_pos": 42880788, "end_pos": 42846627, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074346.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074346.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060375.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060375.2" } ] } }, { "isoform_ac": "F1SIG9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIG9/entry#F1SIG9-1", "sequence": { "sequence": "MRERAPGRVGRGFRWRAVAPPATRRPACGPVVAAAAPRPHPVLWPPCGQRAGPAVRGHGSAAPSRVQAAAVTPPPGPGCEARGASPRCKGSIQMAVCEIQVHSVDNTRMDLIIPGEQYFYLKARSVAERQRWLVALGSAKACLTDSRTQKEKEFAENTENLKTKMSELRLYCDLLVQQVDKTKEVTTTGVSSSEEGIDVGTLLKSTCNTFLKTLEECMQIANAAFTSELLYRTPPGSPQLAMLKSNKMKHPIVPIHNSLERQMELNSCENGSVNMEINDDEEILMKNKSSLCLKPAETDCSLSSEETTDDNITGEMMKEDGEENLGNHDSSLVQPESHSSRSSPEPHWEEGQEVIPTFFSTMNTSFSDIELLEDSGIPTEAFLASCYAVVPVLDKLGPTVFAPVKMDLVGNIKKVNQKYITNKEEFTTLQKIVLHEVEADVAQVRNSATEALLWLKRGLKFLKGFLTEVKNGEKDIQTALNNAYGKTLRQHHGWVVRGVFALALRAAPSYEDFVAALTIKEGDHQKAAFSVGMQRDLSLYLPAMEKQLAILDTLYEIHGLESDEVV", "length": 566, "header": "tr|F1SIG9-1|F1SIG9_PIG Isoform 1 of Pleckstrin homology domain containing A8 OS=Sus scrofa OX=9823 GN=PLEKHA8 PE=4 SV=4 CANONICAL=F1SIG9-1" }, "locus": { "chromosome": "18", "start_pos": 42901174, "end_pos": 42846627, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018163.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018163.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017672.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017672.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZUP6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1660499", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660499", "resource": "Reactome", "description": "Synthesis of PIPs at the plasma membrane" }, { "id": "R-SSC-9845576", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9845576", "resource": "Reactome", "description": "Glycosphingolipid transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "globoside biosynthetic process", "id": "GO:0001576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001576", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "ER to Golgi ceramide transport", "id": "GO:0035621", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035621", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "intermembrane lipid transfer", "id": "GO:0120009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120009", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "lipid transfer activity", "id": "GO:0120013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120013", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "phosphatidylinositol-4-phosphate binding", "id": "GO:0070273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070273", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "ceramide 1-phosphate binding", "id": "GO:1902387", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902387", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "ceramide 1-phosphate transfer activity", "id": "GO:1902388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902388", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "glycolipid binding", "id": "GO:0051861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051861", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" }, { "name": "cerebroside transfer activity", "id": "GO:0140340", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140340", "evidence": [ { "database": "UniProtKB", "id": "F1SIG9", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIG9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 566, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIG9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIG9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIG9" }, { "id": "PF08718", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08718" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycolipid transfer protein", "eco_id": "ECO_0000259", "start_pos": 377, "end_pos": 517, "start_aa": "Ile", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 72 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 270, "end_pos": 272 }, { "start_pos": 287, "end_pos": 289 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 363, "end_pos": 365 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPM6-1", "uniprot_ac": "F1SPM6", "uniprot_id": "F1SPM6_PIG", "mass": { "chemical_mass": 78785.0, "monoisotopic_mass": 78785.0 }, "refseq": { "ac": "XP_005662547", "name": "glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662547" }, "gene_names": [ { "name": "GFPT1", "type": "recommended", "evidence": [ { "id": "F1SPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ] }, { "name": "GFAT1", "type": "synonym", "evidence": [ { "id": "XP_005662547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662547" } ] }, { "name": "GFPT1", "type": "synonym", "evidence": [ { "id": "XP_005662547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662547" } ] } ], "protein_names": [ { "name": "Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1", "type": "recommended", "evidence": [ { "id": "F1SPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM6/entry#names_and_taxonomy" } ] }, { "name": "2.6.1.16", "type": "synonym", "evidence": [ { "id": "F1SPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM6/entry#names_and_taxonomy" } ] }, { "name": "D-fructose-6-phosphate amidotransferase 1", "type": "synonym", "evidence": [ { "id": "F1SPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM6/entry#names_and_taxonomy" } ] }, { "name": "Glutamine:fructose-6-phosphate amidotransferase 1", "type": "synonym", "evidence": [ { "id": "F1SPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM6/entry#names_and_taxonomy" } ] }, { "name": "Hexosephosphate aminotransferase 1", "type": "synonym", "evidence": [ { "id": "F1SPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM6/entry#names_and_taxonomy" } ] }, { "name": "glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005662547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662547" } ] } ], "function": [ { "annotation": "Rate-limiting enzyme of the hexosamine biosynthetic pathway (HBP) that catalyzes the formation of glucosamine-6-phosphate from fructose-6-phosphate and glutamine, thereby controlling the flux of glucose into this pathway. Inhibited by UDP-N-acetylglucosamine (UDP-GlcNAc) through a feedback loop. Fine-tunes the metabolic fluctuations of UDP-GlcNAc and its impacts on hyaluronan synthesis during tissue remodeling. Via control of the HPB, regulates the availability of precursors for N- and O-linked protein glycosylation and modulates peripheral clock oscillation.", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6#function" }, { "database": "UniProtKB", "id": "ARBA00094502", "url": "https://www.uniprot.org/uniprotkb/ARBA00094502#function" }, { "database": "UniProtKB", "id": "A0A286ZUW0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUW0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GFPT1", "url": "https://www.uniprot.org/uniprotkb/F1SPM6", "locus": { "chromosome": "3", "start_pos": 73085319, "end_pos": 73028804, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008339", "url": "https://www.ensembl.org/id/ENSSSCG00000008339" } ] } } ], "crossref": [ { "id": "F1SPM6", "url": "https://alphafold.ebi.ac.uk/entry/F1SPM6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008339", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008339", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00714", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00714", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05008", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05008", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05009", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05009", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397209", "url": "https://www.ncbi.nlm.nih.gov/gene/397209", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035490", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035490", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046348", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046348", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047084", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047084", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SPM6", "url": "https://www.orthodb.org/?gene=F1SPM6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10937:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10937:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01380", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01380", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13522", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13522", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-446210", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446210", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005662547", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662547", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13237", "url": "https://www.rhea-db.org/rhea/13237", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZUW0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZUW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W9Z7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9Z7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W9Z7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9Z7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPM6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPM7", "url": "https://www.uniprot.org/uniprotkb/F1SPM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SPM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCGIFAYLNYHVPRTRREILETLIKGLQRLEYRGYDSAGVGVDGGNDKDWEANACKIQLIKKKGKVKALDEEVHKQQDMDLDIEFDVHLGIAHTRWATHGEPNPVNSHPQRSDKNNEFIVIHNGIITNYKDLKKFLESKGYDFESETDTETIAKLVKYMYDNRESQDTSFTTLVERVIQQLEGAFALVFKSVHFPGQAVGTRRGSPLLIGVRSEHKLSTDHIPILYRTARTQIGSKFTRWGSQGERGKDKKGSCNLSRVDSTTCLFPVEEKAVEYYFASDASAVIEHTNRVIFLEDDDVAAVVDGRLSIHRIKRTAGDHPGRAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETIKNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE", "length": 699, "header": "tr|F1SPM6-1|F1SPM6_PIG Isoform 1 of Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Sus scrofa OX=9823 GN=GFPT1 PE=1 SV=3 CANONICAL=F1SPM6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZUW0-1", "url": "https://www.uniprot.org/uniprotkb/F1SPM6/entry#A0A286ZUW0-1", "sequence": { "sequence": "FAGIFAYLNYHVPRTRREILETLIKGLQRLEYRGYDSAGVGVDGGNDKDWEANACKIQLIKKKGKVKALDEEVHKQQDMDLDIEFDVHLGIAHTRWATHGEPNPVNSHPQRSDKNNEFIVIHNGIITNYKDLKKFLESKGYDFESETDTETIAKLVKYMYDNRESQDTSFTTLVERVIQQLEGAFALVFKSVHFPGQAVGTRRGSPLLIGVRSEHKLSTDHIPILYRTARTQIGSKFTRWGSQGERGKDKKGSCNLSRVDSTTCLFPVEEKAVEYYFASDASAVIEHTNRVIFLEDDDVAAVVDGRLSIHRIKRTAGDHPGRAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETIKNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVSDGPLGKSWAFDSFHLSF", "length": 704, "header": "tr|A0A286ZUW0-1|F1SPM6_PIG Computationally mapped isoform of Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Sus scrofa OX=9823 GN=GFPT1 PE=1 SV=2 CANONICAL=F1SPM6-1" }, "locus": { "chromosome": "3", "start_pos": 73078942, "end_pos": 73037446, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053007.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053007.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035420.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035420.2" } ] } }, { "isoform_ac": "A0A4X1W9Z7-1", "url": "https://www.uniprot.org/uniprotkb/F1SPM6/entry#A0A4X1W9Z7-1", "sequence": { "sequence": "MDLDIEFDVHLGIAHTRWATHGEPNPVNSHPQRSDKNNEFIVIHNGIITNYKDLKKFLESKGYDFESETDTETIAKLVKYMYDNRESQDTSFTTLVERVIQQLEGAFALVFKSVHFPGQAVGTRRGSPLLIGVRSEHKLSTDHIPILYRTGKDKKGSCNLSRVDSTTCLFPVEEKAVEYYFASDASAVIEHTNRVIFLEDDDVAAVVDGRLSIHRIKRTAGDHPGRAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETIKNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE", "length": 603, "header": "tr|A0A4X1W9Z7-1|F1SPM6_PIG Computationally mapped isoform of Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Sus scrofa OX=9823 GN=GFPT1 PE=1 SV=1 CANONICAL=F1SPM6-1" }, "locus": { "chromosome": "3", "start_pos": 73080017, "end_pos": 73046126, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047585.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047585.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038903.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038903.1" } ] } }, { "isoform_ac": "F1SPM6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPM6/entry#F1SPM6-1", "sequence": { "sequence": "MCGIFAYLNYHVPRTRREILETLIKGLQRLEYRGYDSAGVGVDGGNDKDWEANACKIQLIKKKGKVKALDEEVHKQQDMDLDIEFDVHLGIAHTRWATHGEPNPVNSHPQRSDKNNEFIVIHNGIITNYKDLKKFLESKGYDFESETDTETIAKLVKYMYDNRESQDTSFTTLVERVIQQLEGAFALVFKSVHFPGQAVGTRRGSPLLIGVRSEHKLSTDHIPILYRTARTQIGSKFTRWGSQGERGKDKKGSCNLSRVDSTTCLFPVEEKAVEYYFASDASAVIEHTNRVIFLEDDDVAAVVDGRLSIHRIKRTAGDHPGRAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETIKNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVDFPRNLAKSVTVE", "length": 699, "header": "tr|F1SPM6-1|F1SPM6_PIG Isoform 1 of Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 OS=Sus scrofa OX=9823 GN=GFPT1 PE=1 SV=3 CANONICAL=F1SPM6-1" }, "locus": { "chromosome": "3", "start_pos": 73080017, "end_pos": 73028951, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009133.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009133.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008902.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008902.3" } ] } }, { "isoform_ac": "F1SPM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SPM6/entry#F1SPM7-1", "sequence": { "sequence": "MCHKYFKQQDMDLDIEFDVHLGIAHTRWATHGEPNPVNSHPQRSDKNNEFIVIHNGIITNYKDLKKFLESKGYDFESETDTETIAKLVKYMYDNRESQDTSFTTLVERVIQQLEGAFALVFKSVHFPGQAVGTRRGSPLLIGVRSEHKLSTDHIPILYRTGKDKKGSCNLSRVDSTTCLFPVEEKAVEYYFASDASAVIEHTNRVIFLEDDDVAAVVDGRLSIHRIKRTAGDHPGRAVQTLQMELQQIMKGNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRCRRLILIACGTSYHAGVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFVSLVMFALMMCDDRISMQERRKEIMLGLKRLPDLIKEVLSMDDEIQKLATELYHQKSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMIIMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETIKNTKRTIKVPHSVDCLQGILSVIPLQLLAFHLAVLRGYDVSDGPLGKSWAFDSFHLSF", "length": 618, "header": "tr|F1SPM7-1|F1SPM7_PIG Computationally mapped isoform of glutamine--fructose-6-phosphate transaminase (isomerizing) OS=Sus scrofa OX=9823 GN=GFPT1 PE=1 SV=3 CANONICAL=F1SPM6-1" }, "locus": { "chromosome": "3", "start_pos": 73078942, "end_pos": 73045925, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009132.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009132.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008901.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008901.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZUW0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUW0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-446210", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446210", "resource": "Reactome", "description": "Synthesis of UDP-N-acetyl-glucosamine" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "UDP-N-acetylglucosamine biosynthetic process", "id": "GO:0006048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006048", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "pmid": "" }, { "name": "circadian regulation of gene expression", "id": "GO:0032922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032922", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "pmid": "" }, { "name": "fructose 6-phosphate metabolic process", "id": "GO:0006002", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006002", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "pmid": "" }, { "name": "rhythmic process", "id": "GO:0048511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048511", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "pmid": "" }, { "name": "protein N-linked glycosylation", "id": "GO:0006487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006487", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "pmid": "" }, { "name": "UDP-N-acetylglucosamine metabolic process", "id": "GO:0006047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006047", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "pmid": "" }, { "name": "carbohydrate derivative metabolic process", "id": "GO:1901135", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901135", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "glutamine-fructose-6-phosphate transaminase (isomerizing) activity", "id": "GO:0004360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004360", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "pmid": "" }, { "name": "carbohydrate derivative binding", "id": "GO:0097367", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097367", "evidence": [ { "database": "UniProtKB", "id": "F1SPM6", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 338, "end_pos": 340, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13237", "name": "", "equation": "D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13237", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13237" } ] }, { "id": "R-SSC-449715", "name": "GFPT1,2 transfer an amino group from L-Gln to F6P to form GlcN6P", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-449715", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-449715" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPM6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 699, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPM6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPM6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" }, { "id": "PS51278", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51278" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glutamine amidotransferase type-2", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 305, "start_aa": "Cys", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM6" }, { "id": "PS51464", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51464" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SIS", "eco_id": "ECO_0000259", "start_pos": 377, "end_pos": 516, "start_aa": "His", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 255, "end_pos": 257 }, { "start_pos": 338, "end_pos": 340 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI11-1", "uniprot_ac": "F1SI11", "uniprot_id": "F1SI11_PIG", "mass": { "chemical_mass": 225694.0, "monoisotopic_mass": 225694.0 }, "refseq": {}, "gene_names": [ { "name": "FANCM", "type": "recommended", "evidence": [ { "id": "F1SI11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ] } ], "protein_names": [ { "name": "FA complementation group M", "type": "synonym", "evidence": [ { "id": "F1SI11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI11/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FANCM", "url": "https://www.uniprot.org/uniprotkb/F1SI11", "locus": { "chromosome": "1", "start_pos": 175400685, "end_pos": 175334141, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005000", "url": "https://www.ensembl.org/id/ENSSSCG00000005000" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005000", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005000", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12091", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12091", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18033", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18033", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18801", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18801", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20077", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20077", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006166", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006166", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011335", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011335", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039686", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039686", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047418", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047418", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14025", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14025", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14025:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14025:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02732", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02732", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6783310", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783310", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9833482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZUZ6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZUZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI11-1", "url": "https://www.uniprot.org/uniprotkb/F1SI11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGRQRTLFQTWGSRVSRSAGAPSCSSGTGRTQSPGISSAQFSTAAEAQPESDDDVLLVAVYEAEQQLSLENGGFCTSAGALWIYPTNCPVRDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQVFTRKEIWDSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHRALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQVITNLLIEQIELRSEDAPDILPYSHERRVEKLVVPLSEELAAIQKAYIQGMQQGIIEGEFAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKLYNHLEYMFAHTRSTSTSGISAIQKGDKDKKFCYSHPKLKKLEEVVVEHFKSWNAQNTSDKKCDKTRVMIFSSFRDSVQEIAEMLLRHQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREERTYNQSQSNKRSIYKAISGNKQVLHFYQGSPRMVPEGISPQLHKMFIAPGVYEQEKTSWNLQRKSSIFSSMNGMRQNHLKKDWFLSKEEFQLWSRRYRLRDSDEIKEIVLPQVQFLSLQSEENRPTQELAAGVRQLSLCEWRLWQDHPLPTYQVNHSDRCHHFINIMQMIEGMRHEEGECSYELEIKSYLQVEDISSTFSISKNGAFTSKKKSSFPKSINQDRSFLMTESDEEFAEIFKQTHIKPTKIASVKKKASKELKKGQPKKENKNVVIDSLDTNGNSATEDIFQVDLLNDKKASDIDEVAATGAINEYVANKSCGLLTDCQFINKSTSSFTGSFSDSGYNSFSDEKSLSSSLFFPFEDELYVAGTDDPIYNCHLLTKEVLTNVERFLSHSPPPLSGLSNLEYEISKGSALENLLFLPSTECLQNDQSICLMSHSAVNSQQNLELSSLKCITLPAEKNCLSGTTNDTIIDEPNYCDYDIVHKDIKNENLVSNNHIQINTGPPKCFVEEKHPDIANYGLPVLHSDQDESLPLFEDVDTEFNDVSLSPLNSKCKSLCVSDKTAVNEMALVSQFLISDELLLDNNSEPQDQIIGDTVSWKHEDLRDVHEEKLKNDEYGFDCSKYLFSVTFDLGFCSPDSDDEILEHASDTNKNKVSDDLPGRHLDIKEISDANCVSHQAAIPRDQVDSSMSISVTNPSSEDKQNPTLTCFPMSAAKNKKGTSPGYSQFSLPVGEKIVSTPLCKSNTRNSFSKKRIDMARNSDSNKGKVNLQSFKETLNSTFDNSGFSIEKDKSKEQINLHQSRHSAEDEQLTSSESEDDEIFQRKSKKNKRNVLESPENQKNSEVDSPLHAVKKRRVPPNRLDFSSSDESENFHKRDAQSEDCMDDNGNARRGIKVRKRQSHLKLVARKFLDDEAELSQEDAQCISSDESDESENEQDSSLLDFLNDETPLSQSVNDSEMRAIYMKSLRSPMVSSRYKMVHKKHNNINIFSQIPEQDETYLEDSFCVDEEESCKSQSSDEVCVDFNLISEDSFASGSKKYKTRRAVKLKEMKKRQNSVHSKKKLFRIILPADSSEEENHVSDIRESNIVVDPRTVTKCEQQNHCLHSVPSGSSLQSRDHSNPIANQSPNQRQQTALNVKVTVSDVSDSKPQSHNDIESTLSSLTTVDSQKDCRKHPIQSKDAGALEDSGTSAAFCSNSRPHLADTHASPRLPQEGQRTCILVDSREITSGSEVISSLRAIHGFQVEVCPLNGCDYIVSNRMVVERKSQSEMLTCINKNKLIDQIQYLQSMFERICVIVEKDREKTGDTSRMLRRTKSYDSLLTTLIGAGIRILFSSCQEETADLLKELSLVEQRKNVGIHVPTVVNSNKCEALQFYLSIPNISYITALNMCHQFSSVKKMTNSSPQEISMYAQVTHQKAEEIYRYIHYICDIQMLPNDFNQGNFISDA", "length": 2000, "header": "tr|F1SI11-1|F1SI11_PIG Isoform 1 of FA complementation group M OS=Sus scrofa OX=9823 GN=FANCM PE=3 SV=4 CANONICAL=F1SI11-1" }, "isoforms": [ { "isoform_ac": "A0A286ZUZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SI11/entry#A0A286ZUZ6-1", "sequence": { "sequence": "MSGRQRTLFQTWGSRVSRSAGAPSCSSGTGRTQSPGISSAQFSTAAEAQPESDDDVLLVAVYEAEQQLSLENGGFCTSAGALWIYPTNCPVRDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQVFTRKEIWDSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHRALGNYAYCQAVQQVITNLLIEQIELRSEDAPDILPYSHERRVEKLVVPLSEELAAIQKAYIQGMQQGIIEGEFAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKLYNHLEYMFAHTRSTSTSGISAIQKGDKDKKFCYSHPKLKKLEEVVVEHFKSWNAQNTSDKKCDKTRVMIFSSFRDSVQEIAEMLLRHQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREERTYNQSQSNKRSIYKAISGNKQVLHFYQGSPRMVPEGISPQLHKMFIAPGVYEQEKTSWNLQRKSSIFSSMNGMRQNHLKKDWFLSKEEFQLWSRRYRLRDSDEIKEIVLPQVQFLSLQSEENRPTQELAAGVRQLSLCEWRLWQDHPLPTYQVNHSDRCHHFINIMQMIEGMRHEEGECSYELEIKSYLQVEDISSTFSISKNGAFTSKKKSSFPKSINQDRSFLMTESDEEFAEIFKQTHIKPTKIASVKKKASKELKKGQPKKENKNVVIDSLDTNGNSATEDIFQVDLLNDKKASDIDEVAATGAINEYVANKSCGLLTDCQFINKSTSSFTGSFSDSGYNSFSDEKSLSSSLFFPFEDELYVAGTDDPIYNCHLLTKEVLTNVERFLSHSPPPLSGLSNLEYEISKGSALENLLFLPSTECLQNDQSICLMSHSAVNSQQNLELSSLKCITLPAEKNCLSGTTNDTIIDEPNYCDYDIVHKDIKNENLVSNNHIQINTGPPKCFVEEKHPDIANYGLPVLHSDQDESLPLFEDVDTEFNDVSLSPLNSKCKSLCVSDKTAVNEMALVSQFLISDELLLDNNSEPQDQIIGDTVSWKHEDLRDVHEEKLKNDEYGFDCSKYLFSVTFDLGFCSPDSDDEILEHASDTNKNKVSDDLPGRHLDIKEISDANCVSHQAAIPRDQVDSSMSISVTNPSSEDKQNPTLTCFPMSAAKNKKGTSPGYSQFSLPVGEKIVSTPLCKSNTRNSFSKKRIDMARNSDSNKGKVNLQSFKETLNSTFDNSGFSIEKDKSKEQINLHQSRHSAEDEQLTSSESEDDEIFQRKSKKNKRNVLESPENQKNSEVDSPLHAVKKRRVPPNRLDFSSSDESENFHKRDAQSEDCMDDNGNARRGIKVRKRQSHLKLVARKFLDDEAELSQEDAQCISSDESDESENEQDSSLLDFLNDETPLSQSVNDSEMRAIYMKSLRSPMVSSRYKMVHKKHNNINIFSQIPEQDETYLEDSFCVDEEESCKSQSSDEVCVDFNLISEDSFASGSKKYKTRRAVKLKEMKKRQNSVHSKKKLFRIILPADSSEEENHVSDIRESNIVVDPRTVTKCEQQNHCLHSVPSGSSLQSRDHSNPIANQSPNQRQQTALNVKVTVSDVSDSKPQSHNDIESTLSSLTTVDSQKDCRKHPIQSKDAGALEDSGTSAAFCSNSRPHLADTHASPRLPQEGQRTCILVDSREITSGSEVISSLRAIHGFQVEVCPLNGCDYIVSNRMVVERKSQSEMLTCINKNKLIDQIQYLQSMFERICVIVEKDREKTGDTSRMLRRTKSYDSLLTTLIGAGIRILFSSCQEETADLLKELSLVEQRKNVGIHVPTVVNSNKCEALQFYLSIPNISYITALNMCHQFSSVKKMTNSSPQEISMYAQVTHQKAEEIYRYIHYICDIQMLPNDFNQGNFISDA", "length": 1974, "header": "tr|A0A286ZUZ6-1|F1SI11_PIG Computationally mapped isoform of FA complementation group M OS=Sus scrofa OX=9823 GN=FANCM PE=3 SV=2 CANONICAL=F1SI11-1" }, "locus": { "chromosome": "1", "start_pos": 175400564, "end_pos": 175334141, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061562.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061562.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035316.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035316.2" } ] } }, { "isoform_ac": "F1SI11-1", "url": "https://www.uniprot.org/uniprotkb/F1SI11/entry#F1SI11-1", "sequence": { "sequence": "MSGRQRTLFQTWGSRVSRSAGAPSCSSGTGRTQSPGISSAQFSTAAEAQPESDDDVLLVAVYEAEQQLSLENGGFCTSAGALWIYPTNCPVRDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQIEACYRVMGIPQSHMAEMTGSTQVFTRKEIWDSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHRALGNYAYCQVVRELVKYTNHFRILALSATPGSDIKAVQQVITNLLIEQIELRSEDAPDILPYSHERRVEKLVVPLSEELAAIQKAYIQGMQQGIIEGEFAICISLYHGYELLQQMGMRSLYFFLCGIMDGTKGMTRAKNELSRNEDFMKLYNHLEYMFAHTRSTSTSGISAIQKGDKDKKFCYSHPKLKKLEEVVVEHFKSWNAQNTSDKKCDKTRVMIFSSFRDSVQEIAEMLLRHQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREERTYNQSQSNKRSIYKAISGNKQVLHFYQGSPRMVPEGISPQLHKMFIAPGVYEQEKTSWNLQRKSSIFSSMNGMRQNHLKKDWFLSKEEFQLWSRRYRLRDSDEIKEIVLPQVQFLSLQSEENRPTQELAAGVRQLSLCEWRLWQDHPLPTYQVNHSDRCHHFINIMQMIEGMRHEEGECSYELEIKSYLQVEDISSTFSISKNGAFTSKKKSSFPKSINQDRSFLMTESDEEFAEIFKQTHIKPTKIASVKKKASKELKKGQPKKENKNVVIDSLDTNGNSATEDIFQVDLLNDKKASDIDEVAATGAINEYVANKSCGLLTDCQFINKSTSSFTGSFSDSGYNSFSDEKSLSSSLFFPFEDELYVAGTDDPIYNCHLLTKEVLTNVERFLSHSPPPLSGLSNLEYEISKGSALENLLFLPSTECLQNDQSICLMSHSAVNSQQNLELSSLKCITLPAEKNCLSGTTNDTIIDEPNYCDYDIVHKDIKNENLVSNNHIQINTGPPKCFVEEKHPDIANYGLPVLHSDQDESLPLFEDVDTEFNDVSLSPLNSKCKSLCVSDKTAVNEMALVSQFLISDELLLDNNSEPQDQIIGDTVSWKHEDLRDVHEEKLKNDEYGFDCSKYLFSVTFDLGFCSPDSDDEILEHASDTNKNKVSDDLPGRHLDIKEISDANCVSHQAAIPRDQVDSSMSISVTNPSSEDKQNPTLTCFPMSAAKNKKGTSPGYSQFSLPVGEKIVSTPLCKSNTRNSFSKKRIDMARNSDSNKGKVNLQSFKETLNSTFDNSGFSIEKDKSKEQINLHQSRHSAEDEQLTSSESEDDEIFQRKSKKNKRNVLESPENQKNSEVDSPLHAVKKRRVPPNRLDFSSSDESENFHKRDAQSEDCMDDNGNARRGIKVRKRQSHLKLVARKFLDDEAELSQEDAQCISSDESDESENEQDSSLLDFLNDETPLSQSVNDSEMRAIYMKSLRSPMVSSRYKMVHKKHNNINIFSQIPEQDETYLEDSFCVDEEESCKSQSSDEVCVDFNLISEDSFASGSKKYKTRRAVKLKEMKKRQNSVHSKKKLFRIILPADSSEEENHVSDIRESNIVVDPRTVTKCEQQNHCLHSVPSGSSLQSRDHSNPIANQSPNQRQQTALNVKVTVSDVSDSKPQSHNDIESTLSSLTTVDSQKDCRKHPIQSKDAGALEDSGTSAAFCSNSRPHLADTHASPRLPQEGQRTCILVDSREITSGSEVISSLRAIHGFQVEVCPLNGCDYIVSNRMVVERKSQSEMLTCINKNKLIDQIQYLQSMFERICVIVEKDREKTGDTSRMLRRTKSYDSLLTTLIGAGIRILFSSCQEETADLLKELSLVEQRKNVGIHVPTVVNSNKCEALQFYLSIPNISYITALNMCHQFSSVKKMTNSSPQEISMYAQVTHQKAEEIYRYIHYICDIQMLPNDFNQGNFISDA", "length": 2000, "header": "tr|F1SI11-1|F1SI11_PIG Isoform 1 of FA complementation group M OS=Sus scrofa OX=9823 GN=FANCM PE=3 SV=4 CANONICAL=F1SI11-1" }, "locus": { "chromosome": "1", "start_pos": 175400564, "end_pos": 175334141, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005515.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005515.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005378.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005378.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 247, "start_aa": "Thr", "end_pos": 247, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr247", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZUZ6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUZ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6783310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6783310", "resource": "Reactome", "description": "Fanconi Anemia Pathway" }, { "id": "R-SSC-9833482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833482", "resource": "Reactome", "description": "PKR-mediated signaling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "3'-5' DNA helicase activity", "id": "GO:0043138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043138", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "four-way junction DNA binding", "id": "GO:0000400", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000400", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "four-way junction helicase activity", "id": "GO:0009378", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009378", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "Fanconi anaemia nuclear complex", "id": "GO:0043240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043240", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "FANCM-MHF complex", "id": "GO:0071821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071821", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "resolution of meiotic recombination intermediates", "id": "GO:0000712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000712", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "interstrand cross-link repair", "id": "GO:0036297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036297", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "replication fork processing", "id": "GO:0031297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031297", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "positive regulation of protein monoubiquitination", "id": "GO:1902527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902527", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" }, { "name": "double-strand break repair via synthesis-dependent strand annealing", "id": "GO:0045003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045003", "evidence": [ { "database": "UniProtKB", "id": "F1SI11", "url": "https://www.uniprot.org/uniprotkb/F1SI11" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1020, "end_pos": 1022, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1136, "end_pos": 1138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1330, "end_pos": 1332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1508, "end_pos": 1510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1677, "end_pos": 1679, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1933, "end_pos": 1935, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1954, "end_pos": 1956, "annotation": "n_glycosylation_sequon" }, { "start_pos": 424, "end_pos": 426, "annotation": "n_glycosylation_sequon" }, { "start_pos": 555, "end_pos": 557, "annotation": "n_glycosylation_sequon" }, { "start_pos": 706, "end_pos": 708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 867, "end_pos": 869, "annotation": "n_glycosylation_sequon" }, { "start_pos": 880, "end_pos": 882, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SI11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI11" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 98, "end_pos": 266, "start_aa": "Ile", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SI11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI11" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 408, "end_pos": 583, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 247 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1020, "end_pos": 1022 }, { "start_pos": 1136, "end_pos": 1138 }, { "start_pos": 1330, "end_pos": 1332 }, { "start_pos": 1508, "end_pos": 1510 }, { "start_pos": 1677, "end_pos": 1679 }, { "start_pos": 1933, "end_pos": 1935 }, { "start_pos": 1954, "end_pos": 1956 }, { "start_pos": 424, "end_pos": 426 }, { "start_pos": 555, "end_pos": 557 }, { "start_pos": 706, "end_pos": 708 }, { "start_pos": 867, "end_pos": 869 }, { "start_pos": 880, "end_pos": 882 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMT3-1", "uniprot_ac": "F1SMT3", "uniprot_id": "F1SMT3_PIG", "mass": { "chemical_mass": 58360.0, "monoisotopic_mass": 58360.0 }, "refseq": { "ac": "XP_003133779", "name": "acetylcholine receptor subunit gamma isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133779" }, "gene_names": [ { "name": "CHRND", "type": "recommended", "evidence": [ { "id": "F1SMT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ] }, { "name": "CHRNG", "type": "recommended", "evidence": [ { "id": "F1SMT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ] }, { "name": "CHRNG", "type": "synonym", "evidence": [ { "id": "XP_003133779", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133779" }, { "id": "F1SMT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ] } ], "protein_names": [ { "name": "Acetylcholine receptor subunit gamma", "type": "recommended", "evidence": [ { "id": "F1SMT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT3/entry#names_and_taxonomy" } ] }, { "name": "acetylcholine receptor subunit gamma isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003133779", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133779" } ] } ], "function": [ { "annotation": "After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3#function" }, { "database": "UniProtKB", "id": "ARBA00003328", "url": "https://www.uniprot.org/uniprotkb/ARBA00003328#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHRND", "url": "https://www.uniprot.org/uniprotkb/F1SMT3", "locus": { "chromosome": "15", "start_pos": 133048829, "end_pos": 133040340, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000057051", "url": "https://www.ensembl.org/id/ENSSSCG00000057051" } ] } } ], "crossref": [ { "id": "F1SMT3", "url": "https://alphafold.ebi.ac.uk/entry/F1SMT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016287", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016287", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000016288", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016288", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19029", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19029", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19064", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19064", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522221", "url": "https://www.ncbi.nlm.nih.gov/gene/100522221", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038050", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038050", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522221", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522221", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SMT3", "url": "https://www.orthodb.org/?gene=F1SMT3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18945", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18945", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02932", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02932", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003133779", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133779", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29463", "url": "https://www.rhea-db.org/rhea/29463", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "34963", "url": "https://www.rhea-db.org/rhea/34963", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZW99", "url": "https://www.uniprot.org/uniprotkb/A0A286ZW99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZW99-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZW99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SMT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHGGQRLLLLLPLLAVCLGAQGRNQEERLLGDLMHNYNPHLRPAEHDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLRWDPSDYEGLWILRVPSAMVWRPDVVLENNVDGVFEVALYCNVLVSPDGCVYWLPPAIFRSSCPVSVTYFPFDWQNCSLIFQSQTYSTNEINLQLSQEDGQTIEWIFIDPEAFTENGEWAIRHRPAKMLLDEAAPAEEAGHQKVVFYLLIQRKPLFYVINIIAPCVLISSVAVLIYFLPAKAGGQKCTVAINVLLAQTVFLFLVAKKVPETSQAVPLISKYLTFLLVVTILIVVNAVVVLNVSLRSPHTHSMAGGVRKVFLRLLPQLLRMHVRPLAPAAVQDPRPRLWNGSSSGWSIPAWEEVALCLPRSELLFRQHQRNGLVRAALEKLEKGRESGQSQELCGSLKQAAPAIQACVEACNLIARARHQQSHFDSGNEEWFLVGRVLDRVCFLVMLSLFVCGTAGIFLMAHYNRVPALPFPGDPRPYLPSPD", "length": 519, "header": "tr|F1SMT3-1|F1SMT3_PIG Isoform 1 of Acetylcholine receptor subunit gamma OS=Sus scrofa OX=9823 GN=CHRND PE=3 SV=3 CANONICAL=F1SMT3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZW99-1", "url": "https://www.uniprot.org/uniprotkb/F1SMT3/entry#A0A286ZW99-1", "sequence": { "sequence": "MHGGQRLLLLLPLLAVCLGAQGRNQEERLLGDLMHNYNPHLRPAEHDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLRWDPSDYEGLWILRVPSAMVWRPDVVLENKSQTYSTNEINLQLSQEDGQTIEWIFIDPEAFTENGEWAIRHRPAKMLLDEAAPAEEAGHQKVVFYLLIQRKPLFYVINIIAPCVLISSVAVLIYFLPAKAGGQKCTVAINVLLAQTVFLFLVAKKVPETSQAVPLISKYLTFLLVVTILIVVNAVVVLNVSLRSPHTHSMAGGVRKVFLRLLPQLLRMHVRPLAPAAVQDPRPRLWNGSSSGWSIPAWEEVALCLPRSELLFRQHQRNGLVRAALEKLEKGRESGQSQELCGSLKQAAPAIQACVEACNLIARARHQQSHFDSGNEEWFLVGRVLDRVCFLVMLSLFVCGTAGIFLMAHYNRVPALPFPGDPRPYLPSPD", "length": 467, "header": "tr|A0A286ZW99-1|F1SMT3_PIG Computationally mapped isoform of Acetylcholine receptor subunit gamma OS=Sus scrofa OX=9823 GN=CHRND PE=3 SV=2 CANONICAL=F1SMT3-1" }, "locus": { "chromosome": "15", "start_pos": 133058397, "end_pos": 133052313, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045896.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045896.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035964.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035964.2" } ] } }, { "isoform_ac": "F1SMT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SMT3/entry#F1SMT3-1", "sequence": { "sequence": "MHGGQRLLLLLPLLAVCLGAQGRNQEERLLGDLMHNYNPHLRPAEHDSDVVNVSLKLTLTNLISLNEREEALTTNVWIEMQWCDYRLRWDPSDYEGLWILRVPSAMVWRPDVVLENNVDGVFEVALYCNVLVSPDGCVYWLPPAIFRSSCPVSVTYFPFDWQNCSLIFQSQTYSTNEINLQLSQEDGQTIEWIFIDPEAFTENGEWAIRHRPAKMLLDEAAPAEEAGHQKVVFYLLIQRKPLFYVINIIAPCVLISSVAVLIYFLPAKAGGQKCTVAINVLLAQTVFLFLVAKKVPETSQAVPLISKYLTFLLVVTILIVVNAVVVLNVSLRSPHTHSMAGGVRKVFLRLLPQLLRMHVRPLAPAAVQDPRPRLWNGSSSGWSIPAWEEVALCLPRSELLFRQHQRNGLVRAALEKLEKGRESGQSQELCGSLKQAAPAIQACVEACNLIARARHQQSHFDSGNEEWFLVGRVLDRVCFLVMLSLFVCGTAGIFLMAHYNRVPALPFPGDPRPYLPSPD", "length": 519, "header": "tr|F1SMT3-1|F1SMT3_PIG Isoform 1 of Acetylcholine receptor subunit gamma OS=Sus scrofa OX=9823 GN=CHRND PE=3 SV=3 CANONICAL=F1SMT3-1" }, "locus": { "chromosome": "15", "start_pos": 133058397, "end_pos": 133052313, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017736.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017736.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017255.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017255.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZW99", "url": "https://www.uniprot.org/uniprotkb/A0A286ZW99" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522221", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522221", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "acetylcholine-gated monoatomic cation-selective channel activity", "id": "GO:0022848", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022848", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "acetylcholine receptor activity", "id": "GO:0015464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015464", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "postsynaptic membrane", "id": "GO:0045211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045211", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "acetylcholine-gated channel complex", "id": "GO:0005892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005892", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "neuromuscular junction", "id": "GO:0031594", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031594", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "skeletal muscle contraction", "id": "GO:0003009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003009", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "acetylcholine receptor signaling pathway", "id": "GO:0095500", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0095500", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "chemical synaptic transmission", "id": "GO:0007268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007268", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "monoatomic ion transmembrane transport", "id": "GO:0034220", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034220", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" }, { "name": "membrane depolarization", "id": "GO:0051899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051899", "evidence": [ { "database": "UniProtKB", "id": "F1SMT3", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29463", "name": "", "equation": "K(+)(in) = K(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29463", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29463" } ] }, { "id": "34963", "name": "", "equation": "Na(+)(in) = Na(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "34963", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/34963" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMT3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 519, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMT3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMT3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" }, { "id": "PF02931", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02931" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neurotransmitter-gated ion-channel ligand-binding", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 241, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SMT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT3" }, { "id": "PF02932", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02932" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neurotransmitter-gated ion-channel transmembrane", "eco_id": "ECO_0000259", "start_pos": 248, "end_pos": 494, "start_aa": "Ile", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 328, "end_pos": 330 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 52, "end_pos": 54 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJY0-1", "uniprot_ac": "F1SJY0", "uniprot_id": "F1SJY0_PIG", "mass": { "chemical_mass": 26268.0, "monoisotopic_mass": 26268.0 }, "refseq": {}, "gene_names": [ { "name": "MED19", "type": "recommended", "evidence": [ { "id": "F1SJY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY0" } ] } ], "protein_names": [ { "name": "Mediator of RNA polymerase II transcription subunit 19", "type": "recommended", "evidence": [ { "id": "F1SJY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY0/entry#names_and_taxonomy" } ] }, { "name": "Mediator complex subunit 19", "type": "synonym", "evidence": [ { "id": "F1SJY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZY58", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY58#function" }, { "database": "UniProtKB", "id": "RU364151", "url": "https://www.uniprot.org/uniprotkb/RU364151#function" }, { "database": "UniProtKB", "id": "F1SJY0", "url": "https://www.uniprot.org/uniprotkb/F1SJY0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJY0", "url": "https://www.uniprot.org/uniprotkb/F1SJY0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MED19", "url": "https://www.uniprot.org/uniprotkb/F1SJY0", "locus": { "chromosome": "2", "start_pos": 13250820, "end_pos": 13241455, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013177", "url": "https://www.ensembl.org/id/ENSSSCG00000013177" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013177", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013177", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR019403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22536", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22536", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22536:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22536:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10278", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10278", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZY58", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZY58-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJY0", "url": "https://www.uniprot.org/uniprotkb/F1SJY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENFTALFGAQADPPPPPTALGFGPGKPPPPPPPPPGGGPGPAPPSTAATAAPGSDKSAAGCGPFYLMRELPGSTELTGSTNLITHYNLEHSYNKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGFRLHTGPLPEQCRLMHIQPPKKKNKHKHKQSRTQDPVPPETPSDSDHKKKKKKKEEDPERKRKKKEKKKKKNRHSPDHPGMGSSQASSSSSLR", "length": 244, "header": "tr|F1SJY0-1|F1SJY0_PIG Isoform 1 of Mediator of RNA polymerase II transcription subunit 19 OS=Sus scrofa OX=9823 GN=MED19 PE=3 SV=3 CANONICAL=F1SJY0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZY58-1", "url": "https://www.uniprot.org/uniprotkb/F1SJY0/entry#A0A286ZY58-1", "sequence": { "sequence": "MENFTALFGAQADPPPPPTALGFGPGKPPPPPPPPPGGGPGPAPPSTAATAAPGSDKSAAGCGPFYLMRELPGSTELTGSTNLITHYNLEHSYNKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGFRLHTGPLPEQCRLMHIQPPKKKNKHKHKQSRTQDPVPPETPSDSDHKKKKKKKEEDPERKRKKKEKKKKKV", "length": 223, "header": "tr|A0A286ZY58-1|F1SJY0_PIG Computationally mapped isoform of Mediator of RNA polymerase II transcription subunit 19 OS=Sus scrofa OX=9823 GN=MED19 PE=3 SV=3 CANONICAL=F1SJY0-1" }, "locus": { "chromosome": "2", "start_pos": 13249064, "end_pos": 13241491, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055163.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055163.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036650.3", "url": "https://www.ensembl.org/id/ENSSSCP00000036650.3" } ] } }, { "isoform_ac": "F1SJY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJY0/entry#F1SJY0-1", "sequence": { "sequence": "MENFTALFGAQADPPPPPTALGFGPGKPPPPPPPPPGGGPGPAPPSTAATAAPGSDKSAAGCGPFYLMRELPGSTELTGSTNLITHYNLEHSYNKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGFRLHTGPLPEQCRLMHIQPPKKKNKHKHKQSRTQDPVPPETPSDSDHKKKKKKKEEDPERKRKKKEKKKKKNRHSPDHPGMGSSQASSSSSLR", "length": 244, "header": "tr|F1SJY0-1|F1SJY0_PIG Isoform 1 of Mediator of RNA polymerase II transcription subunit 19 OS=Sus scrofa OX=9823 GN=MED19 PE=3 SV=3 CANONICAL=F1SJY0-1" }, "locus": { "chromosome": "2", "start_pos": 13249225, "end_pos": 13241491, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014397.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014397.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014007.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014007.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZY58", "url": "https://www.uniprot.org/uniprotkb/A0A286ZY58" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SJY0", "url": "https://www.uniprot.org/uniprotkb/F1SJY0" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SJY0", "url": "https://www.uniprot.org/uniprotkb/F1SJY0" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SJY0", "url": "https://www.uniprot.org/uniprotkb/F1SJY0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F1SJY0", "url": "https://www.uniprot.org/uniprotkb/F1SJY0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mediator complex", "id": "GO:0016592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016592", "evidence": [ { "database": "UniProtKB", "id": "F1SJY0", "url": "https://www.uniprot.org/uniprotkb/F1SJY0" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "F1SJY0", "url": "https://www.uniprot.org/uniprotkb/F1SJY0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 }, { "start_pos": 3, "end_pos": 5 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI53-1", "uniprot_ac": "F1SI53", "uniprot_id": "F1SI53_PIG", "mass": { "chemical_mass": 65982.0, "monoisotopic_mass": 65982.0 }, "refseq": {}, "gene_names": [ { "name": "ORC2", "type": "recommended", "evidence": [ { "id": "F1SI53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ] } ], "protein_names": [ { "name": "Origin recognition complex subunit 2", "type": "recommended", "evidence": [ { "id": "F1SI53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI53/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A255", "url": "https://www.uniprot.org/uniprotkb/A0A287A255#function" }, { "database": "UniProtKB", "id": "RU368084", "url": "https://www.uniprot.org/uniprotkb/RU368084#function" }, { "database": "UniProtKB", "id": "A0A287A6C5", "url": "https://www.uniprot.org/uniprotkb/A0A287A6C5#function" }, { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ORC2", "url": "https://www.uniprot.org/uniprotkb/F1SI53", "locus": { "chromosome": "15", "start_pos": 104613610, "end_pos": 104656492, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016098", "url": "https://www.ensembl.org/id/ENSSSCG00000016098" } ] } } ], "crossref": [ { "id": "F1SI53", "url": "https://alphafold.ebi.ac.uk/entry/F1SI53", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016098", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016098", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007220", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007220", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14052", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14052", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14052:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14052:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04084", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04084", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24882", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24882", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-176187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68616", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68616", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68949", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68962", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68962", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A255", "url": "https://www.uniprot.org/uniprotkb/A0A287A255", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A255-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A255-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6C5", "url": "https://www.uniprot.org/uniprotkb/A0A287A6C5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6C5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI53-1", "url": "https://www.uniprot.org/uniprotkb/F1SI53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VMSKLELKENKMLEVQFVGDDDVLNHILDREGGAKIKKERAQLLVNTKKIIKKPEYDVEEDDQEVLKDQNYVEVLGRDVQESLKNGSATDGGNKVYSFQNRKHPEKMAKLASELAKTPRKSVSVNLKSDPEVMTDIPQCSKGHSASDTVQLKSSDKSEFLSTAPRGLRKRLIVPQSHSDSESEYSASNSEEDEGLAQECEEDTNEVILSQKTQAQNKVVSAPVCKETPSKKMKRDKTSELVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEQLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTAMLQDCIHVVINGFFPGISVKSILNSITEEVLDHMGTFRSVLDQLDWIINKFKEDSSLELFLLIHNLDSQMLRGDKSQQIIGQLSSLRNIYLIASIDHLNAPLMWDHAKQSLYNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLMKYQLENQDNPSYTGLPFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLLRTKKGGDGVEYLLIPVDNGTLTDFLAKEEEEV", "length": 578, "header": "tr|F1SI53-1|F1SI53_PIG Isoform 1 of Origin recognition complex subunit 2 OS=Sus scrofa OX=9823 GN=ORC2 PE=1 SV=4 CANONICAL=F1SI53-1" }, "isoforms": [ { "isoform_ac": "A0A287A255-1", "url": "https://www.uniprot.org/uniprotkb/F1SI53/entry#A0A287A255-1", "sequence": { "sequence": "VMSKLELKENKMLEVQFVGDDDVLNHILDREGGAKIKKERAQLLVNTKKIIKKPEYDVEEDDQEVLKDQNYVEVLGRDVQESLKNGSATDGGNKVYSFQNRKHPEKMAKLASELAKTPRKSVSVNLKSDPEVMTDIPQCSKAHTLPDALQCPSCQTVPLSPLLFPSTVPQSHSDSESEYSASNSEEDEGLAQECEEDTNEVILSQKTQAQNKVVSAPVCKETPSKKMKRDKTSELVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEQLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTAMLQDCIHVVINGFFPGISVKSILNSITEEVLDHMGTFRSVLDQLDWIINKFKEDSSLELFLLIHNLDSQMLRGDKSQQIIGQLSSLRNIYLIASIDHLNAPLMWDHAKQSLYNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLMKYQLENQDNPSYTGLPFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLLRTKKGGDGVEYLLIPVDNGTLTDFLAKEEEEV", "length": 573, "header": "tr|A0A287A255-1|F1SI53_PIG Computationally mapped isoform of Origin recognition complex subunit 2 OS=Sus scrofa OX=9823 GN=ORC2 PE=1 SV=2 CANONICAL=F1SI53-1" }, "locus": { "chromosome": "15", "start_pos": 104650572, "end_pos": 104614449, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049523.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049523.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038006.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038006.2" } ] } }, { "isoform_ac": "A0A287A6C5-1", "url": "https://www.uniprot.org/uniprotkb/F1SI53/entry#A0A287A6C5-1", "sequence": { "sequence": "MSKLELKENKMLEVQFVGDDDVLNHILDREGGAKIKKERAQLLVNTKKIIKKPEYDVEEDDQEVLKDQNYVEVLGRDVQESLKNGSATDGGNKVYSFQNRKHPEKMAKLASELAKTPRKSVSVNLKSDPEVMTDIPQCSKGHSASDTVQLKSSDKSEFLSTAPRGLRKRLIVPQSHSDSESEYSASNSEEDEGLAQECEEDTNEVILSQKTQAQNKVVSAPVCKETPSKKMKRDKTSELVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEQLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTAMLQDCIHVVINGFFPGISVKSILNSITEEVLDHMGTFRSVLDQLDWIINKFKEVWDHAKQSLYNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLMKYQLENQDNPSYTGLPFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLLRTKKGGDGVEYLLIPVDNGTLTDFLAKEEEEV", "length": 528, "header": "tr|A0A287A6C5-1|F1SI53_PIG Computationally mapped isoform of Origin recognition complex subunit 2 OS=Sus scrofa OX=9823 GN=ORC2 PE=1 SV=1 CANONICAL=F1SI53-1" }, "locus": { "chromosome": "15", "start_pos": 104650569, "end_pos": 104614449, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059684.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059684.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039530.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039530.2" } ] } }, { "isoform_ac": "F1SI53-1", "url": "https://www.uniprot.org/uniprotkb/F1SI53/entry#F1SI53-1", "sequence": { "sequence": "VMSKLELKENKMLEVQFVGDDDVLNHILDREGGAKIKKERAQLLVNTKKIIKKPEYDVEEDDQEVLKDQNYVEVLGRDVQESLKNGSATDGGNKVYSFQNRKHPEKMAKLASELAKTPRKSVSVNLKSDPEVMTDIPQCSKGHSASDTVQLKSSDKSEFLSTAPRGLRKRLIVPQSHSDSESEYSASNSEEDEGLAQECEEDTNEVILSQKTQAQNKVVSAPVCKETPSKKMKRDKTSELVEEYFEAHSSSKVLTSDRTLQKLKRAKLDQQTLRNLLSKVSPSFSAELKQLNQQYEQLFHKWMLQLHLGFNIVLYGLGSKRDLLERFRTAMLQDCIHVVINGFFPGISVKSILNSITEEVLDHMGTFRSVLDQLDWIINKFKEDSSLELFLLIHNLDSQMLRGDKSQQIIGQLSSLRNIYLIASIDHLNAPLMWDHAKQSLYNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLTHVLRSLTPNARGIFRLLMKYQLENQDNPSYTGLPFQDFYQQCREAFLVNSDLTLRAQLTEFRDHKLLRTKKGGDGVEYLLIPVDNGTLTDFLAKEEEEV", "length": 578, "header": "tr|F1SI53-1|F1SI53_PIG Isoform 1 of Origin recognition complex subunit 2 OS=Sus scrofa OX=9823 GN=ORC2 PE=1 SV=4 CANONICAL=F1SI53-1" }, "locus": { "chromosome": "15", "start_pos": 104650572, "end_pos": 104614449, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017527.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017527.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017055.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017055.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A255", "url": "https://www.uniprot.org/uniprotkb/A0A287A255" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-176187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "resource": "Reactome", "description": "Activation of ATR in response to replication stress" }, { "id": "R-SSC-68616", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68616", "resource": "Reactome", "description": "Assembly of the ORC complex at the origin of replication" }, { "id": "R-SSC-68689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68689", "resource": "Reactome", "description": "CDC6 association with the ORC:origin complex" }, { "id": "R-SSC-68949", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "resource": "Reactome", "description": "Orc1 removal from chromatin" }, { "id": "R-SSC-68962", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68962", "resource": "Reactome", "description": "Activation of the pre-replicative complex" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA replication origin binding", "id": "GO:0003688", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003688", "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA replication", "id": "GO:0006260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006260", "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "pmid": "" }, { "name": "DNA replication initiation", "id": "GO:0006270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006270", "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nuclear origin of replication recognition complex", "id": "GO:0005664", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005664", "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "pmid": "" }, { "name": "inner kinetochore", "id": "GO:0000939", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000939", "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "pmid": "" }, { "name": "heterochromatin", "id": "GO:0000792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000792", "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "pmid": "" }, { "name": "chromosome, telomeric region", "id": "GO:0000781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000781", "evidence": [ { "database": "UniProtKB", "id": "F1SI53", "url": "https://www.uniprot.org/uniprotkb/F1SI53" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 564, "end_pos": 566, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SI53-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 578, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SI53-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SI53" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SI53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI53" }, { "id": "PF04084", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04084" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Origin recognition complex subunit 2 RecA-like", "eco_id": "ECO_0000259", "start_pos": 288, "end_pos": 448, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SI53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI53" }, { "id": "PF24882", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24882" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Origin recognition complex subunit 2 winged-helix", "eco_id": "ECO_0000259", "start_pos": 505, "end_pos": 564, "start_aa": "Asp", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 564, "end_pos": 566 }, { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SH67-1", "uniprot_ac": "F1SH67", "uniprot_id": "F1SH67_PIG", "mass": { "chemical_mass": 74043.0, "monoisotopic_mass": 74043.0 }, "refseq": {}, "gene_names": [ { "name": "MDM1", "type": "recommended", "evidence": [ { "id": "F1SH67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH67" } ] } ], "protein_names": [ { "name": "Nuclear protein MDM1", "type": "recommended", "evidence": [ { "id": "F1SH67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH67/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Microtubule-binding protein that negatively regulates centriole duplication. Binds to and stabilizes microtubules.", "evidence": [ { "database": "UniProtKB", "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67#function" }, { "database": "UniProtKB", "id": "ARBA00045771", "url": "https://www.uniprot.org/uniprotkb/ARBA00045771#function" }, { "database": "UniProtKB", "id": "I3LJS8", "url": "https://www.uniprot.org/uniprotkb/I3LJS8#function" }, { "database": "UniProtKB", "id": "A0A287A3H4", "url": "https://www.uniprot.org/uniprotkb/A0A287A3H4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MDM1", "url": "https://www.uniprot.org/uniprotkb/F1SH67", "locus": { "chromosome": "5", "start_pos": 32640945, "end_pos": 32673638, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000483", "url": "https://www.ensembl.org/id/ENSSSCG00000000483" } ] } } ], "crossref": [ { "id": "F1SH67", "url": "https://alphafold.ebi.ac.uk/entry/F1SH67", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000483", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000483", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LAWGEQD", "url": "https://omabrowser.org/oma/group/LAWGEQD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR32078", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32078", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32078:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32078:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A3H4", "url": "https://www.uniprot.org/uniprotkb/A0A287A3H4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3H4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH67-1", "url": "https://www.uniprot.org/uniprotkb/F1SH67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJS8", "url": "https://www.uniprot.org/uniprotkb/I3LJS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LJS8-1", "url": "https://www.uniprot.org/uniprotkb/I3LJS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVRFKGLSEYQRNFLWKKSYLSESYNPSVGRRYPWAGLRSDQLGITKEPSFISKRRVPHHDPQISKSLEWNGATSEKDVVLSPEPEGPRTPESQEAEKKEDINQERVLALEASRVPKRTRSHSADSRAEGASDIVENKEDIAANHVPVSENVELEHSTKLLSENVDDGLDRLLRKKAGLTVVPTRNTLRNSEYQRQFVWKTPKETAPAFAANQVFHNKSKFVPQFKGNSVIHETEYKRNFKGLSPVKEPKLRNDLKENRNFEIISPEKKCNKTDDPLKLEAEMESKDSNQPKKKVTPWKHQRLGKVNSEYRAKFLSPSQYLYKAGAWTRVKENIPNQGSLNAMWYAEVKELREKAEFYRKRVQGTHFSRDHLNQILSDNNRCWDVSSTTSSEGTISSNIRALDLAGDPTSLKASQKCPTKLEERTSVLEEQPEKTTTEKLDVSDAPIPVRRRLAWDAENTTEDQKHLREEEEEEEKEERDKQVNVGELEKLEVQEESKADKMQEGSESSSVSSGKGGRLPTPKLRELGGIQRTHHDLTTPAVGGAVLVSPSKVKPPVPEQKKRTSSQDGLEALKNDFRKKESRAISLLTSPAAGLKTVDPLPLREDSEPNISRSAEATLPVSKIPDYPTNTPKQSPSPPVPHPTGIQLVEFRAP", "length": 655, "header": "tr|F1SH67-1|F1SH67_PIG Isoform 1 of Nuclear protein MDM1 OS=Sus scrofa OX=9823 GN=MDM1 PE=1 SV=3 CANONICAL=F1SH67-1" }, "isoforms": [ { "isoform_ac": "A0A287A3H4-1", "url": "https://www.uniprot.org/uniprotkb/F1SH67/entry#A0A287A3H4-1", "sequence": { "sequence": "MPVRFKGLSEYQRNFLWKKSYLSESYNPSVGRRYPWAGLRSDQLGITKEPSFISKRRVPHHDPQISKSLEWNGATSEKDVVLSPEPEGPRTPESQEAEKKEDINQERVLALEASRVPKRTRSHSADSRAEGASDIVENKEDIAANHVPVSENVELEHSTKLLSENVDDGLDRLLRKKAGLTVVPTRNTLRNSEYQRQFVWKTPKETAPAFAANQVFHNKSKFVPQFKGNSVIHETEYKRNFKGLSPVKEPKLRNDLKENRNFEIISPEKKCNKTDDPLKLEAEMESKDSNQPKKKVTPWKHQRLGKVNSEYRAKFLSPSQYLYKAGAWTRVKENIPNQVKELREKAEFYRKRVQGTHFSRDHLNQILSDNNRCWDVSSTTSSEGTISSNIRALDLAGDPTSLKASQKCPTKLEERTSVLEEQPEKTTTEKLDVSDAPIPVRRRLAWDAENTTEDQKHLREEEEEEEKEERDKQVNVGELEKLEVQEESKADKMQEGSESSSVSSGKGGRLPTPKLRELGGIQRTHHDLTTPAVGGAVLVSPSKVKPPVPEQKKRTSSQDGLEALKNDFRKKESRAISLLTSPAAGLKTVDPLPLREDSEPNISRSAEATLPVSKIPDYPTNTPKQSPSPPVPHPTGIQLVEFRAP", "length": 645, "header": "tr|A0A287A3H4-1|F1SH67_PIG Computationally mapped isoform of Nuclear protein MDM1 OS=Sus scrofa OX=9823 GN=MDM1 PE=1 SV=1 CANONICAL=F1SH67-1" }, "locus": { "chromosome": "5", "start_pos": 32673465, "end_pos": 32644712, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064183.2", "url": "https://www.ensembl.org/id/ENSSSCT00000064183.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038302.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038302.1" } ] } }, { "isoform_ac": "F1SH67-1", "url": "https://www.uniprot.org/uniprotkb/F1SH67/entry#F1SH67-1", "sequence": { "sequence": "MPVRFKGLSEYQRNFLWKKSYLSESYNPSVGRRYPWAGLRSDQLGITKEPSFISKRRVPHHDPQISKSLEWNGATSEKDVVLSPEPEGPRTPESQEAEKKEDINQERVLALEASRVPKRTRSHSADSRAEGASDIVENKEDIAANHVPVSENVELEHSTKLLSENVDDGLDRLLRKKAGLTVVPTRNTLRNSEYQRQFVWKTPKETAPAFAANQVFHNKSKFVPQFKGNSVIHETEYKRNFKGLSPVKEPKLRNDLKENRNFEIISPEKKCNKTDDPLKLEAEMESKDSNQPKKKVTPWKHQRLGKVNSEYRAKFLSPSQYLYKAGAWTRVKENIPNQGSLNAMWYAEVKELREKAEFYRKRVQGTHFSRDHLNQILSDNNRCWDVSSTTSSEGTISSNIRALDLAGDPTSLKASQKCPTKLEERTSVLEEQPEKTTTEKLDVSDAPIPVRRRLAWDAENTTEDQKHLREEEEEEEKEERDKQVNVGELEKLEVQEESKADKMQEGSESSSVSSGKGGRLPTPKLRELGGIQRTHHDLTTPAVGGAVLVSPSKVKPPVPEQKKRTSSQDGLEALKNDFRKKESRAISLLTSPAAGLKTVDPLPLREDSEPNISRSAEATLPVSKIPDYPTNTPKQSPSPPVPHPTGIQLVEFRAP", "length": 655, "header": "tr|F1SH67-1|F1SH67_PIG Isoform 1 of Nuclear protein MDM1 OS=Sus scrofa OX=9823 GN=MDM1 PE=1 SV=3 CANONICAL=F1SH67-1" }, "locus": { "chromosome": "5", "start_pos": 32673465, "end_pos": 32644712, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000521.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000521.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000513.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000513.3" } ] } }, { "isoform_ac": "I3LJS8-1", "url": "https://www.uniprot.org/uniprotkb/F1SH67/entry#I3LJS8-1", "sequence": { "sequence": "MPVRFKGLSEYQRNFLWKKSYLSESYNPSVGRRYPWAGLRSDQLGITKEPSFISKRRVPHHDPQISKSLEWNGATSEKDVVLSPEPEGPRTPESQEAEKKEDINQERVLALEASRVPKRTRSHSADSRAEGASDIVENKEDIAANHVPVSENVELEHSTKLLSENVDDGVFHNKSKFVPQFKGNSVIHETEYKRNFKGLSPVKEPKLRNDLKENRNFEIISPEKKCNKTDDPLKLEAEMESKDSNQPKKKVTPWKHQRLGKVNSEYRAKFLSPSQYLYKAGAWTRVKENIPNQGSLNAMWYAEVKELREKAEFYRKRVQGTHFSRDHLNQILSDNNRCWDVSSTTSSEGTISSNIRALDLAGDPTSLKASQKCPTKLEERTSVLEEQPEKTTTEKLDVSDAPIPVRRRLAWDAENTTEDQKHLREEEEEEEKEERDKQVNVGELEKLEVQEESKADKMQEGSESSSVSSGKGGRLPTPKLRELGGIQRTHHDLTTPAVGGAVLVSPSKVKPPVPEQKKRTSSQDGLEALKNDFRKKESRAISLLTSPAAGLKTVDPLPLREDSEPNISRSAEATLPVSKIPDYPTNTPKQSPSPPVPHPTGIQLVEFRAP", "length": 610, "header": "tr|I3LJS8-1|F1SH67_PIG Computationally mapped isoform of Nuclear protein MDM1 OS=Sus scrofa OX=9823 GN=MDM1 PE=1 SV=2 CANONICAL=F1SH67-1" }, "locus": { "chromosome": "5", "start_pos": 32673465, "end_pos": 32644712, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024910.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024910.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024340.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024340.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A3H4", "url": "https://www.uniprot.org/uniprotkb/A0A287A3H4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YFX3-1", "protein_name": "Nuclear protein MDM1", "gene_name": "MDM1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPVRFRGLSEYKRNFRWKTPELCSPSQEQKSPWAGLRSDQLGITREPNFISKRRVPYHNPQISKSFEWTGDCDSDDPVETEALKTAESLAEHSNDVNQENTETPEGPRLPPKVRSHSSDSGVETALALAGNSMKKTPPVAPPNQKEAFVSPKKEAEKVNNGLHRVLQRKGGMNTPHLSTFPRNSEYQSQFVWKSPHEKSPILAAEEALYNVSKPVPPLKSPAITSETENVRNLKGSPAAKGPQEKCSEEKEFLVHEQTKREELIQKPAEDASKQEKSEQKHPKRKNKQHISQKPLSLHTHRGKMNTEYRSKFLSPAQYFYKDGAWSRIRSKVPNQASQNPLNSMWYMEVRELRARAKAYRQRIEGTHFSRYHLNQLLSDNNSLWDVSSNSSSEEGISNDIRALDLAGVSEKETAPRPKMLQQPGSREQSHQDDTEKKGLSDAPTVPVKRRLVWGEQEGTEEKDSQQLTEEEEKENEQAAVVTQNLEKNNEGINEDNRIEGENTCLLNSPAAVSESSSVSSEPGGRLPTPKLRALGRAQRTHHDLTTPAVGGAVLVSPPKFKSSTSQQRMRSLGTDPSSVGQGAREASQRRSFRPGAKLKAVSLLTSPPAGLGTVDPLPLRQDQWHPNGVSGETVAINSAYQERSSTPPVLKSTKNRPMPCWSPSPRIQGTLKDPEFQHNGNVGNPKMGSFQLPLQERNYNNEDDRLSQISARSAASSSLASQILERAQKRKEDFWGKT", "length": 738 }, "evidence": [ { "id": "F1SH67", "url": "https://omabrowser.org/oma/group/F1SH67/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5PQN4-1", "protein_name": "Stabilizer of axonemal microtubules 6", "gene_name": "Saxo6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVRFKGLSEYQRNFLWKKSYLSESYNPSVGQKYTWAGLRSDQLGITKEPSFISKRRVPYYDPQISKYLEWNGTVRENDALAPPEPQIIRTPKPQEAEQREDANHETVLPQEASRVPKRTRSHSADSRAEGASDGVEKHQDVTKNHSLVNADVELRPSTKPLPESIEPRLDRHLRKKAGLAVVPLNNALRNSEYQRQFVWKTCKETAPVCAANQVFRNKSQVIPQFQGNTFIHESEYKRNFKGLTPVKEPKLREYLKGNSSFEILSPEKKADEPLDLEVDMASEDSDQPIKKPAPWRHQRLGKVNSEYRAKFLSPAQYLYKAGAWTRVKESLSHQGSLNAMWYAEVKELREKAESYRKRVQGTHFSRDHLNQIMSDSNCCWDVSSVASSEGTISSNIQALDLAGDLTSHRTLQKHPPTKLEEKKVALAEQPLENTIRSLELPEAPTMARRKLAWDAAEGTQKEDTQEEPSGEEDGREARGKDKQVCAGELQKVDMQTSKADGPTEGSETSSVSSGKGGRLPTPRLRELGIQRTHHDLTTPAVGGAVLVSPAKAKPSALEQRRRPSSQDGLETLKKGITKKGKHRPLSLLTSPTAGMKTVDPLPLRQDCDANVLRVAEGTLPVLKNLDHQTNTPGQPSPCTLPYCHPSSRIQGRLRDPEFQHNIGKPRMNNTQLLPHGAFNDEDADRLSEISARSAVSSLQAFQTLARAQKRKENFWGKP", "length": 719 }, "evidence": [ { "id": "F1SH67", "url": "https://omabrowser.org/oma/group/F1SH67/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5RHU7-1", "protein_name": "Stabilizer of axonemal microtubules 6", "gene_name": "saxo6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPVRFKGISEYRSKYKGRTSRSRSDSPHRRMRLAGLRSDQSGITQEPQFISKRRVPFYPSQVSSSFRWEGRDHSQQQLEKSRSPAVSPVLRATSAERQVTPLAPRDPPEGTTAPSQPPQAEAAQTSTFAVQKQKQALNGINHALRMKAGLRSEHQRNGLNSEYQRQFMWKTPVAESPLLAAHQMLYSNNRAIPPFKTNPVIMESEYKRSFKGSPLPRPPRLRRDVEQYEVPEFLTESKTPEKSKRKKKKKERPHSRKSSPEQEVAYLQQQEVKSPHNLKDPSPKVMRKGKTEYRSNFHSPLQYSYKDGAWLKIKSAKEEVKELRERAEAYKKRAWGTHFSRQHLNQILSDQNWMWEPSSGTSSSSIESEACRSTSHIIEALDLARAGSVRESSSPGHSASVVVSRRSSSGEVGLPEEPTLPVQRKLAWDEEEQLGEREEIVQDRLTDKEGKTRNENGMERNERLNSLESESLSSAEEGSEASVNGGRLPTPKLKTMQTVQRTHHDRTTPSIDFNLHYIAKAANGSLPRSSPVAGLTTVDVLPMREDVWSDEEVTDYRSLKPPKPSRKQQSSQRHKANAAPPANRIQGTMRNAEFQHNGNLGIFRPELFVLPQSDSALSDNDDKMSQISSRSAASCSMASEVLGRAQRRKQEFWGKS", "length": 656 }, "evidence": [ { "id": "F1SH67", "url": "https://omabrowser.org/oma/group/F1SH67/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of centriole replication", "id": "GO:0046600", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046600", "evidence": [ { "database": "UniProtKB", "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67" } ], "pmid": "" }, { "name": "retina development in camera-type eye", "id": "GO:0060041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060041", "evidence": [ { "database": "UniProtKB", "id": "F1SH67", "url": "https://www.uniprot.org/uniprotkb/F1SH67" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 611, "end_pos": 613, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SH67-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 655, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SH67-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SH67" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 }, { "start_pos": 272, "end_pos": 274 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 611, "end_pos": 613 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGV7-1", "uniprot_ac": "F1SGV7", "uniprot_id": "F1SGV7_PIG", "mass": { "chemical_mass": 199796.0, "monoisotopic_mass": 199796.0 }, "refseq": {}, "gene_names": [ { "name": "TTC3", "type": "recommended", "evidence": [ { "id": "F1SGV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat domain 3", "type": "synonym", "evidence": [ { "id": "F1SGV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGV7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGV7", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTC3", "url": "https://www.uniprot.org/uniprotkb/F1SGV7", "locus": { "chromosome": "13", "start_pos": 200812436, "end_pos": 200707866, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012062", "url": "https://www.ensembl.org/id/ENSSSCG00000012062" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012062", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012062", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR17550", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17550", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17550:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17550:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF19179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24812", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24812", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A3L0", "url": "https://www.uniprot.org/uniprotkb/A0A287A3L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3L0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGV7", "url": "https://www.uniprot.org/uniprotkb/F1SGV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGV7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDDFALGNVTVADYALLEDCAYVDDCVFAPDFMSSDYVRVTQLYCDGVGRQYKDYTQSERNLEFDICTMWCSKPISVLQDYCDAIKIHVFWPLLFQRQHSSVLSRLHPCVEANSPASEISLKKLQHLELMEDIVDLAKKVVNDSFFIGGLLRIGYKIENKILAMEEALNWVKYTGDVTILPKLGAVDNCWPMLSIFFTEYKYHITKVVTENCNLLEEFKTQNCAECIEQGELMKMKGNEEFSKERFDIAIIYYTRAIECRPENHLLYGNRALCFLRTGQFRNALGDGKRAIILKNNWTKGHYRYCAALSMLGEYDWALQANIKAQKLCKNDPEGIKDLIQQHVKLQKQIEDLQGLTPTRNPIKAFYESRAYIPNLSAPAFSTSLNFVETERNSRKTNHEMANGGNQNLKAVDEASKVDDCDCHPEFLPPSSQPPKYKGKQKSRNNELEKFSSDSQGSLPVDLKNILEKQFSKSSRAAHQDFANIMKMLRSLIQDGYTALLEQRCRSAAQAFTELLNGLDPQKIKQLNLAMINYVLVVYGLAISLLGIGQPEELSEAENQFKRMIEHYPNEGLDCLAYCGIGKVYLKKNRFLEALNHFEKAKTLICRLPGVLTWPTSNVVIEETQPGKIKMLLEKFIEECRFPPVPDAICCYQKCRGYSKIQIYITDPDFKGFIRISCCQFCKIEFHMNCWKKLKTTTFNDKIDKDFLQGICLTPDCEGIISKIIIFSSGGQVKCEFEHKVIKEKVPPRPILKQKCSSLEKLRLKEDKKMKRKIQKKEAKKLAQERMEEDLRESNPPKTEEQKETIGSVQSCQFLDDRILQCIKQYADKIKSGILNTSKLLKELLSWKVLTTEDYTTCFSSRNFLNEAVDYVIRHLIQEKNRVKTRVFLHVLSELKEVEPKLAAWIQKLNSFGLDATGPFFSRYGASLKELDFSIMTFLWNEKYGHKLGSIEGKKLDYFYEPTSLKEARCLIWLLEEHRDKFPALHNALDEFFDIMDSRCTVLRKQDSGDVPFNSTKIKNKGKKKKPKDSKPMLVGSGTSSVTPNNETITSGEDIKRNSNSAGPFVVPDHLRQDVEEFEALYEQHSNEYVVRNKKLWDINPKQKCSTLYDYFSQLLEEHGPLDMSNKMFSEEYEFFPEETRQILEKAGGLKSFLLGCPRFVVIDNCIALKKVALRLKKKRKKKNIKTKVEEISKTGEYLRVKLPLNPAAREFKPDVKSKPVSDLSSAPASEDLKPQPTCTNSAQPACEAVKPKPISDNSSRSVSEDAKPKGVSSDPPKPVSEEAGHKQVSNCPKPILEDVKPTYWPQPHLVTGYCTYLPFRGFDITQTPPAFINVLPTMPQYSIYTPLATVSSEYQLQRSIPVVPSFVASDITDVRFEGHHFIAENAPGPQIVPETQILQDSSEIPVKPQCLTDGADTAPSESNRNDGHCGNSAKWEENPENTDEVTDTPRTQMVAIQVSWNITHQEVNTEPYNPFEAQQGDISQIEKEYQVLQEQLKEACENYEQRNIEGSEETKDLEEKLKRNIEENKISKTELDWFLKDLEKEINKWQQEKKEIQERLKALKKKMKKVLNTNETYTQENDGKEKEHELLLDQSIEISNAFTEEKMKMEECIKKRREHYEESLQRAVEAEVSVLENWKETEVYKLQTMESQAEGFLKNLKLMSSDSATYPDTESDIHSWESFLSEVRKEIEKAESQFEEQIQAIKNGSRLSDLSKVQISELSFPACNTVSLSTSFSFFFFF", "length": 1742, "header": "tr|F1SGV7-1|F1SGV7_PIG Isoform 1 of Tetratricopeptide repeat domain 3 OS=Sus scrofa OX=9823 GN=TTC3 PE=4 SV=5 CANONICAL=F1SGV7-1" }, "isoforms": [ { "isoform_ac": "A0A287A3L0-1", "url": "https://www.uniprot.org/uniprotkb/F1SGV7/entry#A0A287A3L0-1", "sequence": { "sequence": "MLGEYDWALQANIKAQKLCKNDPEGIKDLIQQHVKLQKQIEDLQGLTPTRNPIKAFYESRAYIPNLSAPAFSTSLNFVETERNSRKTNHEMANGGNQNLKAVDEASKVDDCDCHPEFLPPSSQPPKYKGKQKSRNNELEKFSSDSQGSLPVDLKNILEKQFSKSSRAAHQDFANIMKMLRSLIQDGYTALLEQRCRSAAQAFTELLNGLDPQKIKQLNLAMINYVLVVYGLAISLLGIGQPEELSEAENQFKRMIEHYPNEGLDCLAYCGIGKVYLKKNRFLEALNHFEKAKTLICRLPGVLTWPTSNVVIEETQPGKIKMLLEKFIEECRFPPVPDAICCYQKCRGYSKIQIYITDPDFKGFIRISCCQFCKIEFHMNCWKKLKTTTFNDKIDKDFLQGICLTPDCEGIISKIIIFSSGGQVKCEFEHKVIKEKVPPRPILKQKCSSLEKLRLKEDKKMKRKIQKKEAKKLAQERMEEDLRESNPPKTEEQKETIGSVQSCQFLDDRILQCIKQYADKIKSGILNTSKLLKELLSWKVLTTEDYTTCFSSRNFLNEAVDYVIRHLIQEKNRVKTRVFLHVLSELKEVEPKLAAWIQKLNSFGTSILKC", "length": 609, "header": "tr|A0A287A3L0-1|F1SGV7_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 3 OS=Sus scrofa OX=9823 GN=TTC3 PE=4 SV=2 CANONICAL=F1SGV7-1" }, "locus": { "chromosome": "13", "start_pos": 200771265, "end_pos": 200742443, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038292.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038292.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038339.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038339.2" } ] } }, { "isoform_ac": "A0A5G2QEE6-1", "url": "https://www.uniprot.org/uniprotkb/F1SGV7/entry#A0A5G2QEE6-1", "sequence": { "sequence": "MDDFALGNVTVADYALLEDCAYVDDCVFAPDFMSSDYVRVTQLYCDGVGRQYKDYTQSERNLEFDICTMWCSKPISVLQDYCDAIKIHVFWPLLFQRQHSSVLSRLHPCVEANSSPASEISLKKLQHLELMEDIVDLAKKVVNDSFFIGGLLRIGYKIENKILAMEEALNWVKYTGDVTILPKLGAVDNCWPMLSIFFTEYKYHITKVVTENCNLLEEFKTQNCAECIEQGELMKMKGNEEFSKERFDIAIIYYTRAIECRPENHLLYGNRALCFLRTGQFRTLSHGRKFGKYKSLKRRK", "length": 300, "header": "tr|A0A5G2QEE6-1|F1SGV7_PIG Computationally mapped isoform of Tetratricopeptide repeat domain 3 OS=Sus scrofa OX=9823 GN=TTC3 PE=4 SV=2 CANONICAL=F1SGV7-1" }, "locus": { "chromosome": "13", "start_pos": 200720490, "end_pos": 200707877, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072556.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072556.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062042.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062042.2" } ] } }, { "isoform_ac": "F1SGV7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGV7/entry#F1SGV7-1", "sequence": { "sequence": "MDDFALGNVTVADYALLEDCAYVDDCVFAPDFMSSDYVRVTQLYCDGVGRQYKDYTQSERNLEFDICTMWCSKPISVLQDYCDAIKIHVFWPLLFQRQHSSVLSRLHPCVEANSPASEISLKKLQHLELMEDIVDLAKKVVNDSFFIGGLLRIGYKIENKILAMEEALNWVKYTGDVTILPKLGAVDNCWPMLSIFFTEYKYHITKVVTENCNLLEEFKTQNCAECIEQGELMKMKGNEEFSKERFDIAIIYYTRAIECRPENHLLYGNRALCFLRTGQFRNALGDGKRAIILKNNWTKGHYRYCAALSMLGEYDWALQANIKAQKLCKNDPEGIKDLIQQHVKLQKQIEDLQGLTPTRNPIKAFYESRAYIPNLSAPAFSTSLNFVETERNSRKTNHEMANGGNQNLKAVDEASKVDDCDCHPEFLPPSSQPPKYKGKQKSRNNELEKFSSDSQGSLPVDLKNILEKQFSKSSRAAHQDFANIMKMLRSLIQDGYTALLEQRCRSAAQAFTELLNGLDPQKIKQLNLAMINYVLVVYGLAISLLGIGQPEELSEAENQFKRMIEHYPNEGLDCLAYCGIGKVYLKKNRFLEALNHFEKAKTLICRLPGVLTWPTSNVVIEETQPGKIKMLLEKFIEECRFPPVPDAICCYQKCRGYSKIQIYITDPDFKGFIRISCCQFCKIEFHMNCWKKLKTTTFNDKIDKDFLQGICLTPDCEGIISKIIIFSSGGQVKCEFEHKVIKEKVPPRPILKQKCSSLEKLRLKEDKKMKRKIQKKEAKKLAQERMEEDLRESNPPKTEEQKETIGSVQSCQFLDDRILQCIKQYADKIKSGILNTSKLLKELLSWKVLTTEDYTTCFSSRNFLNEAVDYVIRHLIQEKNRVKTRVFLHVLSELKEVEPKLAAWIQKLNSFGLDATGPFFSRYGASLKELDFSIMTFLWNEKYGHKLGSIEGKKLDYFYEPTSLKEARCLIWLLEEHRDKFPALHNALDEFFDIMDSRCTVLRKQDSGDVPFNSTKIKNKGKKKKPKDSKPMLVGSGTSSVTPNNETITSGEDIKRNSNSAGPFVVPDHLRQDVEEFEALYEQHSNEYVVRNKKLWDINPKQKCSTLYDYFSQLLEEHGPLDMSNKMFSEEYEFFPEETRQILEKAGGLKSFLLGCPRFVVIDNCIALKKVALRLKKKRKKKNIKTKVEEISKTGEYLRVKLPLNPAAREFKPDVKSKPVSDLSSAPASEDLKPQPTCTNSAQPACEAVKPKPISDNSSRSVSEDAKPKGVSSDPPKPVSEEAGHKQVSNCPKPILEDVKPTYWPQPHLVTGYCTYLPFRGFDITQTPPAFINVLPTMPQYSIYTPLATVSSEYQLQRSIPVVPSFVASDITDVRFEGHHFIAENAPGPQIVPETQILQDSSEIPVKPQCLTDGADTAPSESNRNDGHCGNSAKWEENPENTDEVTDTPRTQMVAIQVSWNITHQEVNTEPYNPFEAQQGDISQIEKEYQVLQEQLKEACENYEQRNIEGSEETKDLEEKLKRNIEENKISKTELDWFLKDLEKEINKWQQEKKEIQERLKALKKKMKKVLNTNETYTQENDGKEKEHELLLDQSIEISNAFTEEKMKMEECIKKRREHYEESLQRAVEAEVSVLENWKETEVYKLQTMESQAEGFLKNLKLMSSDSATYPDTESDIHSWESFLSEVRKEIEKAESQFEEQIQAIKNGSRLSDLSKVQISELSFPACNTVSLSTSFSFFFFF", "length": 1742, "header": "tr|F1SGV7-1|F1SGV7_PIG Isoform 1 of Tetratricopeptide repeat domain 3 OS=Sus scrofa OX=9823 GN=TTC3 PE=4 SV=5 CANONICAL=F1SGV7-1" }, "locus": { "chromosome": "13", "start_pos": 200812433, "end_pos": 200707877, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013194.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013194.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012842.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012842.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEE6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SGV7", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "F1SGV7", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" } ], "pmid": "" }, { "name": "protein K48-linked ubiquitination", "id": "GO:0070936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070936", "evidence": [ { "database": "UniProtKB", "id": "F1SGV7", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGV7", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "F1SGV7", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1013, "end_pos": 1015, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1045, "end_pos": 1047, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1257, "end_pos": 1259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1461, "end_pos": 1463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1574, "end_pos": 1576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1707, "end_pos": 1709, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 835, "end_pos": 837, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" }, { "id": "PF24812", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24812" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "E3 ubiquitin-protein ligase TTC3 winged helix turn helix", "eco_id": "ECO_0000259", "start_pos": 1064, "end_pos": 1185, "start_aa": "Phe", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" }, { "id": "PF19179", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19179" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "E3 ubiquitin-protein ligase TTC3/DZIP3", "eco_id": "ECO_0000259", "start_pos": 620, "end_pos": 735, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGV7" }, { "id": "PF24525", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24525" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TTC3/DZIP3-like helical", "eco_id": "ECO_0000259", "start_pos": 1476, "end_pos": 1725, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1013, "end_pos": 1015 }, { "start_pos": 1045, "end_pos": 1047 }, { "start_pos": 1257, "end_pos": 1259 }, { "start_pos": 142, "end_pos": 144 }, { "start_pos": 1461, "end_pos": 1463 }, { "start_pos": 1574, "end_pos": 1576 }, { "start_pos": 1707, "end_pos": 1709 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 374, "end_pos": 376 }, { "start_pos": 835, "end_pos": 837 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMM0-1", "uniprot_ac": "F1SMM0", "uniprot_id": "F1SMM0_PIG", "mass": { "chemical_mass": 111071.0, "monoisotopic_mass": 111071.0 }, "refseq": {}, "gene_names": [ { "name": "ERMP1", "type": "recommended", "evidence": [ { "id": "F1SMM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" } ] } ], "protein_names": [ { "name": "Endoplasmic reticulum metallopeptidase 1", "type": "recommended", "evidence": [ { "id": "F1SMM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMM0/entry#names_and_taxonomy" } ] }, { "name": "Felix-ina", "type": "synonym", "evidence": [ { "id": "F1SMM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMM0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Within the ovary, required for the organization of somatic cells and oocytes into discrete follicular structures.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Y2", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Y2#function" }, { "database": "UniProtKB", "id": "ARBA00054905", "url": "https://www.uniprot.org/uniprotkb/ARBA00054905#function" }, { "database": "UniProtKB", "id": "F1SMM0", "url": "https://www.uniprot.org/uniprotkb/F1SMM0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMM0", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ERMP1", "url": "https://www.uniprot.org/uniprotkb/F1SMM0", "locus": { "chromosome": "1", "start_pos": 216396296, "end_pos": 216312615, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005207", "url": "https://www.ensembl.org/id/ENSSSCG00000005207" } ] } } ], "crossref": [ { "id": "F1SMM0", "url": "https://alphafold.ebi.ac.uk/entry/F1SMM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005207", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005207", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03875", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03875", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155278", "url": "https://www.ncbi.nlm.nih.gov/gene/100155278", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007484", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007484", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053973", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053973", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WNNTIGA", "url": "https://omabrowser.org/oma/group/WNNTIGA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287A5Y2", "url": "https://www.orthodb.org/?gene=A0A287A5Y2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12147", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12147", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12147:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12147:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04389", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04389", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22249", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22249", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A5Y2", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A5Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMM0", "url": "https://www.uniprot.org/uniprotkb/F1SMM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMM0-1", "url": "https://www.uniprot.org/uniprotkb/F1SMM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVIFPLINLCPTLQREALHKKVHPMTPSQALALSRCSWAICPQNLGRAARQDRPIRRSLALCSFRPLTRRRCCGRRGSWGCRGPGRLGWRWTLVAMEWGSESGAVRRHRIGGEHRDGPAPALQPEREAAAQESLADACGGGGARTRKRSAKGSGGASRGAETGLSEGRAALGLALYLLALRALVQLSLQQLMLHRAAGHSGEFNARQARDYLEHITSIGPRTTGSVENEILTVRYLLEQIKLIEVQSNSLHKISVDVQRPTGSFSIDFLGGFTSYYDNITNVVVKLEPRDGAQHAVLANCHFDSVANSPGASDDAVSCSVMLEVLRVLSKSSEALHHAIIFLFNGAEENVLQASHGFITQHPWASLIRAFINLEAAGVGGKELVFQTGPENPWLVQAYVSSAKHPFASVVAQEVFQSGIIPSDTDFRIYRDFGNIPGIDLAFIENGYIYHTKYDTADRILTDSIQRAGDNILAVLKYLATSDMLASSSEYQHGNMVFFDVLGLFVIAYPSRVGSIINYMVVMAVVLYLGRKLLHPKHKTATYTKDFFCGLGITLISWFTSLVTVLIIAVFISLIGQSLSWYNHFYVSVCLYGTAAVAKIIFIHSLAKKFYFVNASDQYLGDVFFDVSLLVHCGFLTALTYRGLCSAFISAVWVALPLLTKLCMHKDLKQYGAGGKFITFYLLGMFIPYLYALYLIWAVFEMFTPILGRSGSEIPPDVVLASILAGCTMILSSYFINFIYLAKSTKRTMLTLTLVCTVTFLLVCSGTFFPYSSNPSSPKPKRVFLQHVTRTFHGLDGHVVKRDSGIWINGFDYTGMSHITPHIPEINDSTRAHCEENAPLCGFPWYLPVHFLIRKNWYLPAPEVSPRDPAHFRLVSKEQTPWDSIKLTFEATGPSHMSFYVRTHKGSTLSQWSLGNGTPVTSKGGDYFVFYSHGLQASAWQFWIEVQVLEEQPEGMVTVAIAAHYFSGEDKRSSQLDALKEKFPDWTFPSAWVCTYNLFVF", "length": 1000, "header": "tr|F1SMM0-1|F1SMM0_PIG Isoform 1 of Endoplasmic reticulum metallopeptidase 1 OS=Sus scrofa OX=9823 GN=ERMP1 PE=1 SV=2 CANONICAL=F1SMM0-1" }, "isoforms": [ { "isoform_ac": "A0A287A5Y2-1", "url": "https://www.uniprot.org/uniprotkb/F1SMM0/entry#A0A287A5Y2-1", "sequence": { "sequence": "MEWGSESGAVRRHRIGGEHRDGPAPALQPEREAAAQESLADACGGGGARTRKRSAKGSGGASRGAETGLSEGRAALGLALYLLALRALVQLSLQQLMLHRAAGHSGEFNARQARDYLEHITSIGPRTTGSVENEILTVRYLLEQIKLIEVQSNSLHKISVDVQRPTGSFSIDFLGGFTSYYDNITNVVVKLEPRDGAQHAVLANCHFDSVANSPGASDDAVSCSVMLEVLRVLSKSSEALHHAIIFLFNGAEENVLQASHGFITQHPWASLIRAFINLEAAGVGGKELVFQTGPENPWLVQAYVSSAKHPFASVVAQEVFQSGIIPSDTDFRIYRDFGNIPGIDLAFIENGYIYHTKYDTADRILTDSIQRAAATYTKDFFCGLGITLISWFTSLVTVLIIAVFISLIGQSLSWYNHFYVSVCLYGTAAVAKIIFIHSLAKKFYFVNASDQYLGDVFFDVSLLVHCGFLTALTYRGLCSAFISAVWVALPLLTKLCMHKDLKQYGAGGKFITFYLLGMFIPYLYALYLIWAVFEMFTPILGRSGSEIPPDVVLASILAGCTMILSSYFINFIYLAKSTKRTMLTLTLVCTVTFLLVCSGTFFPYSSNPSSPKPKRVFLQHVTRTFHGLDGHVVKRDSGIWINGFDYTGMSHITPHIPEINDSTRAHCEENAPLCGFPWYLPVHFLIRKNWYLPAPEVSPRDPAHFRLVSKEQTPWDSIKLTFEATGPSHMSFYVRTHKGSTLSQWSLGNGTPVTSKGGDYFVFYSHGLQASAWQFWIEVQVLEEQPEGMVTVAIAAHYFSGEDKRSSQLDALKEKFPDWTFPSAWVCTYNLFVF", "length": 834, "header": "tr|A0A287A5Y2-1|F1SMM0_PIG Computationally mapped isoform of Endoplasmic reticulum metallopeptidase 1 OS=Sus scrofa OX=9823 GN=ERMP1 PE=1 SV=1 CANONICAL=F1SMM0-1" }, "locus": { "chromosome": "1", "start_pos": 216376082, "end_pos": 216312912, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056828.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056828.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039167.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039167.1" } ] } }, { "isoform_ac": "F1SMM0-1", "url": "https://www.uniprot.org/uniprotkb/F1SMM0/entry#F1SMM0-1", "sequence": { "sequence": "MVIFPLINLCPTLQREALHKKVHPMTPSQALALSRCSWAICPQNLGRAARQDRPIRRSLALCSFRPLTRRRCCGRRGSWGCRGPGRLGWRWTLVAMEWGSESGAVRRHRIGGEHRDGPAPALQPEREAAAQESLADACGGGGARTRKRSAKGSGGASRGAETGLSEGRAALGLALYLLALRALVQLSLQQLMLHRAAGHSGEFNARQARDYLEHITSIGPRTTGSVENEILTVRYLLEQIKLIEVQSNSLHKISVDVQRPTGSFSIDFLGGFTSYYDNITNVVVKLEPRDGAQHAVLANCHFDSVANSPGASDDAVSCSVMLEVLRVLSKSSEALHHAIIFLFNGAEENVLQASHGFITQHPWASLIRAFINLEAAGVGGKELVFQTGPENPWLVQAYVSSAKHPFASVVAQEVFQSGIIPSDTDFRIYRDFGNIPGIDLAFIENGYIYHTKYDTADRILTDSIQRAGDNILAVLKYLATSDMLASSSEYQHGNMVFFDVLGLFVIAYPSRVGSIINYMVVMAVVLYLGRKLLHPKHKTATYTKDFFCGLGITLISWFTSLVTVLIIAVFISLIGQSLSWYNHFYVSVCLYGTAAVAKIIFIHSLAKKFYFVNASDQYLGDVFFDVSLLVHCGFLTALTYRGLCSAFISAVWVALPLLTKLCMHKDLKQYGAGGKFITFYLLGMFIPYLYALYLIWAVFEMFTPILGRSGSEIPPDVVLASILAGCTMILSSYFINFIYLAKSTKRTMLTLTLVCTVTFLLVCSGTFFPYSSNPSSPKPKRVFLQHVTRTFHGLDGHVVKRDSGIWINGFDYTGMSHITPHIPEINDSTRAHCEENAPLCGFPWYLPVHFLIRKNWYLPAPEVSPRDPAHFRLVSKEQTPWDSIKLTFEATGPSHMSFYVRTHKGSTLSQWSLGNGTPVTSKGGDYFVFYSHGLQASAWQFWIEVQVLEEQPEGMVTVAIAAHYFSGEDKRSSQLDALKEKFPDWTFPSAWVCTYNLFVF", "length": 1000, "header": "tr|F1SMM0-1|F1SMM0_PIG Isoform 1 of Endoplasmic reticulum metallopeptidase 1 OS=Sus scrofa OX=9823 GN=ERMP1 PE=1 SV=2 CANONICAL=F1SMM0-1" }, "locus": { "chromosome": "1", "start_pos": 216376082, "end_pos": 216312627, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005739.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005739.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005597.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005597.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A5Y2", "url": "https://www.uniprot.org/uniprotkb/A0A287A5Y2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F4HRW3-1", "protein_name": "Zn-dependent exopeptidases superfamily protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MPFWKMSARDVTGFKFLFSLVFIYALMSAIVYSVLHMKFISPLPANAPLERFSEARAVEHIRVLAEEIDGRQEGRPGLKEAATYIKSQLEMVKERAGPNLRVEVEETQVDGSFSMMFLGHSISLGYRNHTNILMRISSMNSLDTDASVLMNAHYDSPVNSPGAGDCGSCVASLLELARLVVDSGWVPPQPVIFLFNGAEELFMLGSHGFMTKHKLKDTIGAFINVEASGTGGIDLVCQSGPGSWPSYVYSQAAVYPMAQSSAQDVFPVIPGDTDYRMFAEDYADIPGLDIIFLLGGYYYHTTFDTVDRIVPGSMQARGENLISVLKAFASSSRLKVASERKTLDVDANSDMVERAVFFDYLTWFMVFYPRRVAFVLHNIPAALFLCVPFFLYMMDPRTHPLLSFFWAFFKGVMHHFAGILLGVIVPVLFAVIRLFFAYPMSWFAHSYLAFLMFIPCSFFGLLIPRAISDRVSHFQGVSSKKIMKEPSDEARFWGAFGFYAFATSAYFFAGLNGGFMTFVISISMLLGWIAFYLSVKSYGYNSIKSPMFYVIALVPCLLYSLYFGGILTLLLIEKTGMMGAIPPPYGFYLADVAVAAVIGIVTGLCLGPIIPICDRWLAKSSILKFLLHFTVVMLAVSSQFFPYSKDAPKRVVLQHTFISTGGNEITGSSYDLAVIDSNSMEFIFKHAPEVAKELHVGPSFSLGNAEASPQEAWMALFPISCVLTTNGRFPAKANNILERYSQFPLLQAHKPQTTFENGTRRVHLELSLGSLEEIWVTVLNITGPLSGWSFADGKPPAPELPPGGPPSYILRLSGNSDEKWNFWLEASSEEEVRVDVAVLDQRLDEETIHLKGLFPKWSDVIAYTSFLSTYLF", "length": 872 }, "evidence": [ { "id": "F1SMM0", "url": "https://omabrowser.org/oma/group/F1SMM0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3UVK0-1", "protein_name": "Endoplasmic reticulum metallopeptidase 1", "gene_name": "Ermp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEWSSESAAVRRHRGTAERREGEAAASHRQREASAQEDAKGVGRMWGKTENGGGSRVAKTALSEARTALALALYLLALRALVQLSLQRLVLSRTSGLQGEFDARQARDYLEHITAIGPRTTGSTENEILTVQYLLEQIKLIEAQSNSLHSISVDIQRPTGSFSIDFLGGFTSYYDNITNVVVKLEPRDGAESAILANCHFDSVANSPGASDDAVSCAVMLEVLRVMSASPEPMQHAVVFLFNGAEENVLQASHGFITQHPWASLIRAFINLEAAGVGGKELVFQTGPENPWLVQAYVSAAKHPFASVVAQEVFQSGIIPSDTDFRIYRDFGNIPGIDLAFIENGYIYHTKYDTADRILIDSIQRAGDNILAVLKHLATSDTLASSSEYRHGSMVFFDVLGLLVIAYPSRVGSIINYMVVMAVVLYLGKKLLRPKHRNANYMRDFLCGLGITFISWFTSLVTVLIIAVFISLIGQSLSWYNYFYIAVCLYGTATVAKIIFIHTLAKRFYYMNASDLYLGELFFDTSLFVHCAFLVALTYQGFCSAFMSAVWVVFPLLTKLCVYKDFKKHGAQGRFVALYLLGMFIPYLYGLYLIWAVFEMFTPILGRSGSEIPPDVVLASILAVCVMILSSYFITFIYLVNSTKKTILTLILVCAVTFLLVCSGAFFPYSSNPESPKPKRVFLQHVSRTFHNLEGSVVKRDSGIWINGFDYTGMSHVTPHIPEINDTIRAHCEEDAPLCGFPWYLPVHFLIRKNWYLPAPEVSPRNPAHFRLVSKEKMPWDSIKLTFEATGPSHMSFYVRTHKGSTLSQWSLGNGIPVTSRGGDYFVFYSHGLQASAWRFWIEVQVSEEQAEGMVTVAIAAHYLSGENKRSSQLDALKKKFPDWSFPSAWVSTYSLFVF", "length": 898 }, "evidence": [ { "id": "F1SMM0", "url": "https://omabrowser.org/oma/group/F1SMM0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6UPR8-1", "protein_name": "Endoplasmic reticulum metallopeptidase 1", "gene_name": "Ermp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEWSSESAAVRRHRGTAERREGQAAASHPQREASAQEDARGGGRMRGRTESGGESRGAKTALSEARTALALALYLLALRALVQLSLQRLVLSRTSGLQGEFDARQARVYLEHITAIGPRTTGSAENEILTVQYLLEQITLIEEQSNSLHRISVDVQRPTGSFSIDFLGGFTSYYDNITNVVVKLEPQDGAKYAVLANCHFDSVANSPGASDDAVSCAVMLEVLRVMAASPEPLQHAVVFLFNGAEENVLQASHGFITQHPWASLIRAFINLEAAGVGGKELVFQTGPENPWLVQAYVSAAKHPFASVVAQEVFQSGIIPSDTDFRIYRDFGNIPGIDLAFIENGYIYHTKYDTADRILIDSIQRAGDNILAVLKYLATSDMLASSSEYRHGSMVFFDVLGLLVIAYPSRVGSIINYMVVMAVVLYLGRKLLRPNHSNSNYVRDFLCGLGITFISWFTSLVTVLIIAVFVSLIGQSLSWYNYFYIAVCLYGTATVAKIILIHTLAKRFYYVNASDLYLGELFFDTSLFVHCGFLVALTAQGFCSAFMSAVWVAFPLLTKLCVYKDFKKHGAKGRFIALYLLGMFIPYLYGLYLIWAVFEMFTPILGRSGSEIPPDVVLASILAVCVMILSSYFITFIYLVNSTKKTILTLILVCAVTFLLVCSGAFFPYSSNPDSPKPKRVFLQHVSRTFHNLEGSVVKRDSGIWINGFDYTGMSHVTPHIPEINDTIRAHCEENAPLCGFPWYLPVHFLIRKNWYLPAPEISPRNPAHFRLVSKEKMPWDSIKLTFEATGPSHMSFYVRTHKGSTLSQWSLGNGIPVTSRGGDYFVFYSHGLQASAWQFWIEVQVSEEQPEGMVTVAIAAHYLSGENKRSSQLDALKEKFPDWSFPSAWVSTYSLFVF", "length": 898 }, "evidence": [ { "id": "F1SMM0", "url": "https://omabrowser.org/oma/group/F1SMM0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7Z2K6-1", "protein_name": "Endoplasmic reticulum metallopeptidase 1", "gene_name": "ERMP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEWGSESAAVRRHRVGVERREGAAAAPPPEREARAQEPLVDGCSGGGRTRKRSPGGSGGASRGAGTGLSEVRAALGLALYLIALRTLVQLSLQQLVLRGAAGHRGEFDALQARDYLEHITSIGPRTTGSPENEILTVHYLLEQIKLIEVQSNSLHKISVDVQRPTGSFSIDFLGGFTSYYDNITNVVVKLEPRDGAQHAVLANCHFDSVANSPGASDDAVSCSVMLEVLRVLSTSSEALHHAVIFLFNGAEENVLQASHGFITQHPWASLIRAFINLEAAGVGGKELVFQTGPENPWLVQAYVSAAKHPFASVVAQEVFQSGIIPSDTDFRIYRDFGNIPGIDLAFIENGYIYHTKYDTADRILTDSIQRAGDNILAVLKHLATSDMLAAASKYRHGNMVFFDVLGLFVIAYPSRIGSIINYMVVMGVVLYLGKKFLQPKHKTGNYKKDFLCGLGITLISWFTSLVTVLIIAVFISLIGQSLSWYNHFYVSVCLYGTATVAKIILIHTLAKRFYYMNASAQYLGEVFFDISLFVHCCFLVTLTYQGLCSAFISAVWVAFPLLTKLCVHKDFKQHGAQGKFIAFYLLGMFIPYLYALYLIWAVFEMFTPILGRSGSEIPPDVVLASILAGCTMILSSYFINFIYLAKSTKKTMLTLTLVCAITFLLVCSGTFFPYSSNPANPKPKRVFLQHMTRTFHDLEGNAVKRDSGIWINGFDYTGISHITPHIPEINDSIRAHCEENAPLCGFPWYLPVHFLIRKNWYLPAPEVSPRNPPHFRLISKEQTPWDSIKLTFEATGPSHMSFYVRAHKGSTLSQWSLGNGTPVTSKGGDYFVFYSHGLQASAWQFWIEVQVSEEHPEGMVTVAIAAHYLSGEDKRSPQLDALKEKFPDWTFPSAWVCTYDLFVF", "length": 904 }, "evidence": [ { "id": "F1SMM0", "url": "https://omabrowser.org/oma/group/F1SMM0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SMM0", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" } ], "pmid": "" }, { "name": "cellular response to oxidative stress", "id": "GO:0034599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034599", "evidence": [ { "database": "UniProtKB", "id": "F1SMM0", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SMM0", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" } ], "pmid": "" }, { "name": "metalloexopeptidase activity", "id": "GO:0008235", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008235", "evidence": [ { "database": "UniProtKB", "id": "F1SMM0", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SMM0", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 613, "end_pos": 615, "annotation": "n_glycosylation_sequon" }, { "start_pos": 826, "end_pos": 828, "annotation": "n_glycosylation_sequon" }, { "start_pos": 915, "end_pos": 917, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMM0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1000, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMM0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMM0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" }, { "id": "PF22248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22248" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Endoplasmic reticulum metallopeptidase 1-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 777, "end_pos": 998, "start_aa": "Pro", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SMM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" }, { "id": "PF22249", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22249" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Endoplasmic reticulum metallopeptidase 1/1-A TM", "eco_id": "ECO_0000259", "start_pos": 542, "end_pos": 763, "start_aa": "Tyr", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SMM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMM0" }, { "id": "PF04389", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04389" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M28", "eco_id": "ECO_0000259", "start_pos": 281, "end_pos": 474, "start_aa": "Asn", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 278, "end_pos": 280 }, { "start_pos": 613, "end_pos": 615 }, { "start_pos": 826, "end_pos": 828 }, { "start_pos": 915, "end_pos": 917 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM69-1", "uniprot_ac": "F1SM69", "uniprot_id": "F1SM69_PIG", "mass": { "chemical_mass": 50704.0, "monoisotopic_mass": 50704.0 }, "refseq": { "ac": "NP_001231182", "name": "D(2) dopamine receptor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231182" }, "gene_names": [ { "name": "DRD2", "type": "recommended", "evidence": [ { "id": "F1SM69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ] }, { "name": "DRD2", "type": "synonym", "evidence": [ { "id": "NP_001231182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231182" } ] } ], "protein_names": [ { "name": "D(2) dopamine receptor", "type": "recommended", "evidence": [ { "id": "F1SM69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM69/entry#names_and_taxonomy" } ] }, { "name": "D(2) dopamine receptor", "type": "synonym", "evidence": [ { "id": "NP_001231182", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231182" } ] }, { "name": "Dopamine D2 receptor", "type": "synonym", "evidence": [ { "id": "F1SM69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM69/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Dopamine receptor whose activity is mediated by G proteins which inhibit adenylyl cyclase. Positively regulates postnatal regression of retinal hyaloid vessels via suppression of VEGFR2/KDR activity, downstream of OPN5.", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69#function" }, { "database": "UniProtKB", "id": "ARBA00045505", "url": "https://www.uniprot.org/uniprotkb/ARBA00045505#function" }, { "database": "UniProtKB", "id": "A0A287B0Q7", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Q7#function" } ] }, { "annotation": "The increase in NOS protein seen in both the endothelium and vascular smooth muscle in response to cerebral vasospasm is enhanced by dopamine in a D(2)R-dependent mechanism.", "evidence": [ { "database": "RefSeq", "id": "NP_001231182", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231182" }, { "database": "PubMed", "id": "18807216", "url": "https://glygen.org/publication/PubMed/18807216" } ] }, { "annotation": "The pig DRD2 gene was cloned, investigated its distribution in tissues and polymorphisms were identified. Publication Status: Online-Only", "evidence": [ { "database": "RefSeq", "id": "NP_001231182", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231182" }, { "database": "PubMed", "id": "22180074", "url": "https://glygen.org/publication/PubMed/22180074" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DRD2", "url": "https://www.uniprot.org/uniprotkb/F1SM69", "locus": { "chromosome": "9", "start_pos": 41068779, "end_pos": 41133599, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015048", "url": "https://www.ensembl.org/id/ENSSSCG00000015048" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015048", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015048", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15309", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15309", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100624857", "url": "https://www.ncbi.nlm.nih.gov/gene/100624857", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000929", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000929", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001922", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001922", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624857", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624857", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SM69", "url": "https://www.orthodb.org/?gene=F1SM69", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24248", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24248", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24248:SF87", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24248:SF87", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-390651", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390651", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231182", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231182", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B0Q7", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM69-1", "url": "https://www.uniprot.org/uniprotkb/F1SM69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPLNLSWYDDDLESRNWSRPFNGSEGKADRPHYNYYAMLLTLLIFIIVFGNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRRVTVMIAIVWVLSFTISCPLLFGLNNTDQNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAFRANLKAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHALHSTPDSPARPEKNGHAKDHPKIAKIFEIQSMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVLGVFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKILHC", "length": 443, "header": "tr|F1SM69-1|F1SM69_PIG Isoform 1 of D(2) dopamine receptor OS=Sus scrofa OX=9823 GN=DRD2 PE=3 SV=2 CANONICAL=F1SM69-1" }, "isoforms": [ { "isoform_ac": "A0A287B0Q7-1", "url": "https://www.uniprot.org/uniprotkb/F1SM69/entry#A0A287B0Q7-1", "sequence": { "sequence": "MGAWPPRGPAAPMDPLNLSWYDDDLESRNWSRPFNGSEGKADRPHYNYYAMLLTLLIFIIVFGNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRRVTVMIAIVWVLSFTISCPLLFGLNNTDQNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAFRANLKAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHALHSTPDSPARPEKNGHAKDHPKIAKIFEIQSMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVLGVFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKILHC", "length": 455, "header": "tr|A0A287B0Q7-1|F1SM69_PIG Computationally mapped isoform of D(2) dopamine receptor OS=Sus scrofa OX=9823 GN=DRD2 PE=3 SV=1 CANONICAL=F1SM69-1" }, "locus": { "chromosome": "9", "start_pos": 41133490, "end_pos": 41069873, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055534.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055534.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049999.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049999.2" } ] } }, { "isoform_ac": "F1SM69-1", "url": "https://www.uniprot.org/uniprotkb/F1SM69/entry#F1SM69-1", "sequence": { "sequence": "MDPLNLSWYDDDLESRNWSRPFNGSEGKADRPHYNYYAMLLTLLIFIIVFGNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVVGEWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRYSSKRRVTVMIAIVWVLSFTISCPLLFGLNNTDQNECIIANPAFVVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNTKRSSRAFRANLKAPLKGNCTHPEDMKLCTVIMKSNGSFPVNRRRVEAARRAQELEMEMLSSTSPPERTRYSPIPPSHHQLTLPDPSHHALHSTPDSPARPEKNGHAKDHPKIAKIFEIQSMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVLGVFIICWLPFFITHILNIHCDCNIPPVLYSAFTWLGYVNSAVNPIIYTTFNIEFRKAFLKILHC", "length": 443, "header": "tr|F1SM69-1|F1SM69_PIG Isoform 1 of D(2) dopamine receptor OS=Sus scrofa OX=9823 GN=DRD2 PE=3 SV=2 CANONICAL=F1SM69-1" }, "locus": { "chromosome": "9", "start_pos": 41083374, "end_pos": 41069873, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016414.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016414.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015973.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015973.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Dopamine D2-receptor-mediated increase in vascular and endothelial NOS activity ameliorates cerebral vasospasm after subarachnoid hemorrhage in vitro.", "journal": "Neurocritical care", "date": "2009", "authors": "Pyne-Geithman Gail J, Caudell Danielle N, Cooper Matthew, Clark Joseph F, Shutter Lori A", "evidence": [ { "database": "RefSeq", "id": "NP_001231182", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231182" } ], "reference": [ { "type": "PubMed", "id": "18807216", "url": "https://glygen.org/publication/PubMed/18807216" } ] }, { "title": "Molecular cloning, expression and variation analyses of the dopamine D2 receptor gene in pig breeds in China.", "journal": "Genetics and molecular research : GMR", "date": "2011-12-05", "authors": "Xu H P, He X M, Fang M X, Hu Y S, Jia X Z, Nie Q H, Zhang X Q", "evidence": [ { "database": "RefSeq", "id": "NP_001231182", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231182" } ], "reference": [ { "type": "PubMed", "id": "22180074", "url": "https://glygen.org/publication/PubMed/22180074" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Q7", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Q7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624857", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624857", "resource": "KEGG Pathway" }, { "id": "R-SSC-390651", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390651", "resource": "Reactome", "description": "Dopamine receptors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 12, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "GABA-ergic synapse", "id": "GO:0098982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098982", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "postsynaptic membrane", "id": "GO:0045211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045211", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "non-motile cilium", "id": "GO:0097730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097730", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "presynaptic membrane", "id": "GO:0042734", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042734", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "ciliary membrane", "id": "GO:0060170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060170", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "dopaminergic synapse", "id": "GO:0098691", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098691", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "G protein-coupled receptor complex", "id": "GO:0097648", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097648", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "dopamine neurotransmitter receptor activity, coupled via Gi/Go", "id": "GO:0001591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001591", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "heterotrimeric G-protein binding", "id": "GO:0032795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032795", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "G-protein alpha-subunit binding", "id": "GO:0001965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001965", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "dopamine binding", "id": "GO:0035240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035240", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 16, "go_terms": [ { "name": "response to histamine", "id": "GO:0034776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034776", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "negative regulation of protein secretion", "id": "GO:0050709", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050709", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "hyaloid vascular plexus regression", "id": "GO:1990384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990384", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "arachidonate secretion", "id": "GO:0050482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050482", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "adenylate cyclase-inhibiting dopamine receptor signaling pathway", "id": "GO:0007195", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007195", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "positive regulation of glial cell-derived neurotrophic factor production", "id": "GO:1900168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900168", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "regulation of neurotransmitter uptake", "id": "GO:0051580", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051580", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "positive regulation of cytokinesis", "id": "GO:0032467", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032467", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "negative regulation of innate immune response", "id": "GO:0045824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045824", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "presynaptic modulation of chemical synaptic transmission", "id": "GO:0099171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099171", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "phospholipase C-activating dopamine receptor signaling pathway", "id": "GO:0060158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060158", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "regulation of dopamine secretion", "id": "GO:0014059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014059", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "negative regulation of synaptic transmission, glutamatergic", "id": "GO:0051967", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051967", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "regulation of potassium ion transport", "id": "GO:0043266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043266", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "negative regulation of cytosolic calcium ion concentration", "id": "GO:0051481", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051481", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" }, { "name": "positive regulation of multicellular organismal process", "id": "GO:0051240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051240", "evidence": [ { "database": "UniProtKB", "id": "F1SM69", "url": "https://www.uniprot.org/uniprotkb/F1SM69" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SM69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM69" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 426, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 175, "end_pos": 177 }, { "start_pos": 17, "end_pos": 19 }, { "start_pos": 23, "end_pos": 25 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 260, "end_pos": 262 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK31-1", "uniprot_ac": "F1SK31", "uniprot_id": "F1SK31_PIG", "mass": { "chemical_mass": 59132.0, "monoisotopic_mass": 59132.0 }, "refseq": { "ac": "XP_005672578", "name": "occludin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672578" }, "gene_names": [ { "name": "OCLN", "type": "recommended", "evidence": [ { "id": "F1SK31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ] }, { "name": "OCLN", "type": "synonym", "evidence": [ { "id": "XP_005672578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672578" } ] } ], "protein_names": [ { "name": "Occludin", "type": "recommended", "evidence": [ { "id": "F1SK31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK31/entry#names_and_taxonomy" } ] }, { "name": "occludin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005672578", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672578" } ] } ], "function": [ { "annotation": "May play a role in the formation and regulation of the tight junction (TJ) paracellular permeability barrier.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL69", "url": "https://www.uniprot.org/uniprotkb/A0A287AL69#function" }, { "database": "UniProtKB", "id": "PIRNR005993", "url": "https://www.uniprot.org/uniprotkb/PIRNR005993#function" }, { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OCLN", "url": "https://www.uniprot.org/uniprotkb/F1SK31", "locus": { "chromosome": "16", "start_pos": 47654033, "end_pos": 47600212, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021514", "url": "https://www.ensembl.org/id/ENSSSCG00000021514" } ] } } ], "crossref": [ { "id": "ENSSSCG00000021514", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021514", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "397236", "url": "https://www.ncbi.nlm.nih.gov/gene/397236", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010844", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010844", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031176", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031176", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QIYMLCS", "url": "https://omabrowser.org/oma/group/QIYMLCS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SK31", "url": "https://www.orthodb.org/?gene=F1SK31", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23288", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23288", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23288:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23288:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07303", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07303", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-351906", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-351906", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005672578", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672578", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AL69", "url": "https://www.uniprot.org/uniprotkb/A0A287AL69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AL69-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNN0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK31-1", "url": "https://www.uniprot.org/uniprotkb/F1SK31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSRPFESPPPYRPDEFKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYGGGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIVYIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEAIAIVLGFMVIVAFALMIFFAVKTRSKMYHYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPLSDYAERVDSPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAKGRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQAELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKKMVGDYDRRKT", "length": 522, "header": "tr|F1SK31-1|F1SK31_PIG Isoform 1 of Occludin OS=Sus scrofa OX=9823 GN=OCLN PE=3 SV=3 CANONICAL=F1SK31-1" }, "isoforms": [ { "isoform_ac": "A0A287AL69-1", "url": "https://www.uniprot.org/uniprotkb/F1SK31/entry#A0A287AL69-1", "sequence": { "sequence": "MYGSQTAASAASRNLSPRPADSAPLGMGKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYGGGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIVYIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEAIAIVLGFMVIVAFALMIFFAVKTRSKMYHYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPLSDYAERVDSPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAKGRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQAELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKKMVGDYDRRKT", "length": 533, "header": "tr|A0A287AL69-1|F1SK31_PIG Computationally mapped isoform of Occludin OS=Sus scrofa OX=9823 GN=OCLN PE=3 SV=1 CANONICAL=F1SK31-1" }, "locus": { "chromosome": "16", "start_pos": 47649803, "end_pos": 47612815, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057617.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057617.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044638.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044638.2" } ] } }, { "isoform_ac": "A0A8W4FNN0-1", "url": "https://www.uniprot.org/uniprotkb/F1SK31/entry#A0A8W4FNN0-1", "sequence": { "sequence": "MSSRPFESPPPYRPDEFKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYGGGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIVYIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEVKNVSAGTQDMPPPLSDYAERVDSPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAKGRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQAELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKKMVGDYDRRKT", "length": 468, "header": "tr|A0A8W4FNN0-1|F1SK31_PIG Computationally mapped isoform of Occludin OS=Sus scrofa OX=9823 GN=OCLN PE=3 SV=1 CANONICAL=F1SK31-1" }, "locus": { "chromosome": "16", "start_pos": 47649803, "end_pos": 47608881, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094252.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094252.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079905.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079905.1" } ] } }, { "isoform_ac": "F1SK31-1", "url": "https://www.uniprot.org/uniprotkb/F1SK31/entry#F1SK31-1", "sequence": { "sequence": "MSSRPFESPPPYRPDEFKPNHYAPSNDIYGGETPIRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSMLVIVMCIAIFACVASTLAWDRGYGTLIGGGMGYPYAGSGFGGYGSSYGYGYGYGYGYGGGYTDPRAAKGFFLAMAAFCFIAALVIFVTSVIRSEISRTRRYYLTVIIMSAILGVMVFIATIVYIMGVNPTAQASGSLYSSQIYALCNQFYTTAVTGLYVDQYLYHYCVVDPQEAIAIVLGFMVIVAFALMIFFAVKTRSKMYHYDKSNILWDKERIYDEQPPNVEEWVKNVSAGTQDMPPPLSDYAERVDSPMAYSSNGKVNEKRPYPESSYKSTPVPEVVQELPLMSPVEDLRQPHYSSSGNLEASSKRAPAKGRAGKSRRSEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDSGLQEYKSLQAELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKKMVGDYDRRKT", "length": 522, "header": "tr|F1SK31-1|F1SK31_PIG Isoform 1 of Occludin OS=Sus scrofa OX=9823 GN=OCLN PE=3 SV=3 CANONICAL=F1SK31-1" }, "locus": { "chromosome": "16", "start_pos": 47649803, "end_pos": 47608881, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060865.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060865.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041435.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041435.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL69", "url": "https://www.uniprot.org/uniprotkb/A0A287AL69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-351906", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-351906", "resource": "Reactome", "description": "Apoptotic cleavage of cell adhesion proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MXT0-1", "protein_name": "Occludin", "gene_name": "Ocln", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSVRPFESPPPYRPDEFKPNHYAPSNDVYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSMLIIVMCIAIFACVASTLAWDRAYGTGIFGGSLGYPYGGSGFGSFGSGYGYGYGYGYGYGGYTDPRAAKGFLLAMAAFCFIASLVIFVTSVIRSGMSRTRRYYLIVIIVSVILGILVFIATIVYIMGVNPTAQASGSMYGSQIYAICNQFYTPGATGLYVDQYLYHYCVVDPQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILWDKEHIYDEQPPNVEEWVKNVSAGTQDMPPPPSDYAERVDSLMAYSSNGKVDGKRSYPESFYKSTPLVPEVAQELPLTSPVDDFRQPRYSSSGNLETPSKRAPTKGRTGKLKRTEPDYYETDYTTGGESCDELEEDWVREYPPITSDQQRQLYKRDFDTGLQEYKSLQAELDEVNKELSRLDKELDDYREENEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKRMVGDYDKRKT", "length": 523 }, "evidence": [ { "id": "F1SK31", "url": "https://omabrowser.org/oma/group/F1SK31/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q16625-1", "protein_name": "Occludin", "gene_name": "OCLN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSRPLESPPPYRPDEFKPNHYAPSNDIYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAKGFMLAMAAFCFIAALVIFVTSVIRSEMSRTRRYYLSVIIVSAILGIMVFIATIVYIMGVNPTAQSSGSLYGSQIYALCNQFYTPAATGLYVDQYLYHYCVVDPQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILWDKEHIYDEQPPNVEEWVKNVSAGTQDVPSPPSDYVERVDSPMAYSSNGKVNDKRFYPESSYKSTPVPEVVQELPLTSPVDDFRQPRYSSGGNFETPSKRAPAKGRAGRSKRTEQDHYETDYTTGGESCDELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQKT", "length": 522 }, "evidence": [ { "id": "F1SK31", "url": "https://omabrowser.org/oma/group/F1SK31/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q61146-1", "protein_name": "Occludin", "gene_name": "Ocln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRPFESPPPYRPDEFKPNHYAPSNDMYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSMLIIVMCIAIFACVASTLAWDRGYGTGLFGGSLNYPYSGFGYGGGYGGGYGGYGYGYGGYTDPRAAKGFLLAMAAFCFIASLVIFVTSVIRSGMSRTRRYYLIVIIVSAILGIMVFIATIVYIMGVNPTAQASGSMYGSQIYMICNQFYTPGGTGLYVDQYLYHYCVVDPQEAIAIVLGFMIIVAFALIIFFAVKTRRKMDRYDKSNILWDKEHIYDEQPPNVEEWVKNVSAGTQDMPPPPSDYAERVDSPMAYSSNGKVNGKRSYPESFYKSTPLVPEVAQEIPLTLSVDDFRQPRYSSNGNLETPSKRAPTKGKAGKGKRTDPDHYETDYTTGGESCEELEEDWVREYPPITSDQQRQLYKRNFDAGLQEYKSLQAELDDVNKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKRNYCKQLKSKLSHIKRMVGDYDRRKP", "length": 521 }, "evidence": [ { "id": "F1SK31", "url": "https://omabrowser.org/oma/group/F1SK31/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P6T5-1", "protein_name": "Occludin", "gene_name": "Ocln", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVRPFESPPPYRPDEFKPNHYAPSNDMYGGEMHVRPMLSQPAYSFYPEDEILHFYKWTSPPGVIRILSMLVIVMCIAVFACVASTLAWDRAYGTGIFGGSMNYPYGSGFGSYGGGFGGYGYGYGYGYGGYTDPRAAKGFLLAMAAFCFIASLVIFVTSVIRSGMSRTRRYYLIVIIVSAILGIMVFIATIVYIMGVNPTAQASGSMYGSQIYTICSQFYTPGGTGLYVDQYLYHYCVVDPQEAIAIVLGFMIIVAFALIIVFAVKTRRKMDRYDKSNILWDKEHIYDEQPPNVEEWVKNVSAGTQDMPPPPSDYAERVDSPMAYSSNGKVNGKRSYPDSLYKSPPLVPEVAQEIPLTLSVDDFRQPRYSSNDNLETPSKRTPTKGKAGKAKRTDPDHYETDYTTGGESCDELEEDWLREYPPITSDQQRQLYKRNFDAGLQEYKSLLAELDEVNKELSRLDRELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNYCKQLKSKLSHIKRMVGDYDRRKT", "length": 523 }, "evidence": [ { "id": "F1SK31", "url": "https://omabrowser.org/oma/group/F1SK31/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "endocytic vesicle", "id": "GO:0030139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030139", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "apicolateral plasma membrane", "id": "GO:0016327", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016327", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "negative regulation of gene expression", "id": "GO:0010629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010629", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "bicellular tight junction assembly", "id": "GO:0070830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070830", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "positive regulation of D-glucose import", "id": "GO:0046326", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046326", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" }, { "name": "positive regulation of blood-brain barrier permeability", "id": "GO:1905605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905605", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "F1SK31", "url": "https://www.uniprot.org/uniprotkb/F1SK31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK31" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 269, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SK31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK31" }, { "id": "PS51980", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51980" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "OCEL", "eco_id": "ECO_0000259", "start_pos": 414, "end_pos": 522, "start_aa": "Glu", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 300, "end_pos": 302 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SN65-1", "uniprot_ac": "F1SN65", "uniprot_id": "F1SN65_PIG", "mass": { "chemical_mass": 121268.0, "monoisotopic_mass": 121268.0 }, "refseq": { "ac": "XP_001926177", "name": "solute carrier family 12 member 1 isoform 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926177" }, "gene_names": [ { "name": "SLC12A1", "type": "recommended", "evidence": [ { "id": "F1SN65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ] }, { "name": "SLC12A1", "type": "synonym", "evidence": [ { "id": "XP_001926177", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926177" } ] } ], "protein_names": [ { "name": "Solute carrier family 12 member 1", "type": "synonym", "evidence": [ { "id": "F1SN65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN65/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 12 (sodium/potassium/chloride transporters), member 1", "type": "synonym", "evidence": [ { "id": "XP_001926177", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926177" } ] }, { "name": "solute carrier family 12 member 1 isoform 3", "type": "synonym", "evidence": [ { "id": "XP_001926177", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926177" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC12A1", "url": "https://www.uniprot.org/uniprotkb/F1SN65", "locus": { "chromosome": "1", "start_pos": 123481369, "end_pos": 123571630, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004659", "url": "https://www.ensembl.org/id/ENSSSCG00000004659" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004659", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004659", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154291", "url": "https://www.ncbi.nlm.nih.gov/gene/100154291", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004842", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004842", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018491", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018491", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154291", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154291", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BI72", "url": "https://www.orthodb.org/?gene=A0A287BI72", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SN65", "url": "https://www.orthodb.org/?gene=F1SN65", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11827", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11827", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11827:SF93", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11827:SF93", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00324", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00324", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03522", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03522", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08403", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08403", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-426117", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-426117", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001926177", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926177", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B828", "url": "https://www.uniprot.org/uniprotkb/A0A287B828", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B828-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B828-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BI72", "url": "https://www.uniprot.org/uniprotkb/A0A287BI72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BI72-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BI72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN65-1", "url": "https://www.uniprot.org/uniprotkb/F1SN65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLNNSSNAFLDSGPGNTNRFQVNVISESHESSAAVNSNADPPHYEETSFGDESQNRFRISFRPGNQECYDNFLQNGEMAKTDASFHAYDSHTNTYYLQTFGHNTVDAVPKIEYYRNTGSISGPKVNRPSLLEIHEQLAKNVAVAPGSADVVANGDGMPGDERSENKEEEDQTGGVKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVLIILLSTMVTSITGLSTSAIATNGFVRGGGAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVVDLLKESDSMMVDPTNDIRIIGSITVVILLGISVAGMEWEAKAQVILLVILLIAIANFFIGTVIPSNSEKKSRGFFNYQASIFAENFGPSFTKGEGFFSVFAIFFPAATGILAGANISGDLEDPQDAIPKGTMLAIFITTVAYIGVAICVGACVVRDATGSMNDTIISGMNCNGSAACGLGYDFSRCRHEPCQYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIYKALQFFAKGYGKNNEPLRGYFLTFVIAMAFILIAELNTIAPIISNFFLASYALINFSCFHASYAKSPGWRPAYGIYNMWVSLFGAILCCAVMFVINWWAAVITYVIEFFLYIYVTYKKPDVNWGSSTQALSYVSALDNALELTTVEDHVKNFRPQCIVLTGGPMSRPALLDITHAFTKNSGLCICCEVFVGPRKLCVKEMNSGMAKKQAWLIKNKIKAFYAAVAADCFRDGVRSLLQASGLGRMKPNTLVIGYKKNWRKAPLTEIENYVGIIHDAFDFEIGVVIVRISQGFDISHVLQVQDELEKLEQERLALEATIKDNECEEGSGGIRGLFKKAGKLNITKTTPKKDSSINTIQSMHVGEFNQKLVEASTQFKKKQGKGTIDVWWLFDDGGLTLLIPYILTLRKKWKDCKLRIYVGGKINRIEEEKIAMASLLSKFRIKFADIHIIGDINIKPNKESWKVFEEMIEPYRLHESCKDLTTAEKLKRETPWKITDAELEAVKEKSYRQVRLNELLQEHSRAANLIVLSLPVARKGSISDWLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS", "length": 1100, "header": "tr|F1SN65-1|F1SN65_PIG Isoform 1 of Solute carrier family 12 member 1 OS=Sus scrofa OX=9823 GN=SLC12A1 PE=3 SV=5 CANONICAL=F1SN65-1" }, "isoforms": [ { "isoform_ac": "A0A287B828-1", "url": "https://www.uniprot.org/uniprotkb/F1SN65/entry#A0A287B828-1", "sequence": { "sequence": "MSLNNSSNAFLDSGPGNTNRFQVNVISESHESSAAVNSNADPPHYEETSFGDESQNRFRISFRPGNQECYDNFLQNGEMAKTDASFHAYDSHTNTYYLQTFGHNTVDAVPKIEYYRNTGSISGPKVNRPSLLEIHEQLAKNVAVAPGSADVVANGDGMPGDERSENKEEEDQTGGVKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVLIILLSTMVTSITGLSTSAIATNGFVRGGLGVIIIGLSVVVTTLTGISMSAICTNGVVRGGGAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVVDLLKESDSMMVDPTNDIRIIGSITVVILLGISVAGMEWEAKAQVILLVILLIAIANFFIGTVIPSNSEKKSRGFFNYQASIFAENFGPSFTKGEGFFSVFAIFFPAATGILAGANISGDLEDPQDAIPKGTMLAIFITTVAYIGVAICVGACVVRDATGSMNDTIISGMNCNGSAACGLGYDFSRCRHEPCQYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIYKALQFFAKGYGKNNEPLRGYFLTFVIAMAFILIAELNTIAPIISNFFLASYALINFSCFHASYAKSPGWRPAYGIYNMWVSLFGAILCCAVMFVINWWAAVITYVIEFFLYIYVTYKKPDVNWGSSTQALSYVSALDNALELTTVEDHVKNFRPQCIVLTGGPMSRPALLDITHAFTKNSGLCICCEVFVGPRKLCVKEMNSGMAKKQAWLIKNKIKAFYAAVAADCFRDGVRSLLQASGLGRMKPNTLVIGYKKNWRKAPLTEIENYVGIIHDAFDFEIGVVIVRISQGFDISHVLQVQDELEKLEQERLALEATIKDNECEEGSGGIRGLFKKAGKLNITKTTPKKDSSINTIQSMHVGEFNQKLVEASTQFKKKQGKGTIDVWWLFDDGGLTLLIPYILTLRKKWKDCKLRIYVGGKINRIEEEKIAMASLLSKFRIKFADIHIIGDINIKPNKESWKVFEEMIEPYRLHESCKDLTTAEKLKRETPWKITDAELEAVKEKSYRQVRLNELLQEHSRAANLIVLSLPVARKGSISDWLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS", "length": 1132, "header": "tr|A0A287B828-1|F1SN65_PIG Computationally mapped isoform of Solute carrier family 12 member 1 OS=Sus scrofa OX=9823 GN=SLC12A1 PE=3 SV=2 CANONICAL=F1SN65-1" }, "locus": { "chromosome": "1", "start_pos": 123570182, "end_pos": 123482565, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046526.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046526.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052263.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052263.2" } ] } }, { "isoform_ac": "A0A287BI72-1", "url": "https://www.uniprot.org/uniprotkb/F1SN65/entry#A0A287BI72-1", "sequence": { "sequence": "MSLNNSSNAFLDSGPGNTNRFQVNVISESHESSAAVNSNADPPHYEETSFGDESQNRFRISFRPGNQECYDNFLQNGEMAKTDASFHAYDSHTNTYYLQTFGHNTVDAVPKIEYYRNTGSISGPKVNRPSLLEIHEQLAKNVAVAPGSADVVANGDGMPGDERSENKEEEDQTGGVKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVIIIGLSVVVTTLTGISMSAICTNGVVRGGGAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVVDLLKESDSMMVDPTNDIRIIGSITVVILLGISVAGMEWEAKAQVILLVILLIAIANFFIGTVIPSNSEKKSRGFFNYQASIFAENFGPSFTKGEGFFSVFAIFFPAATGILAGANISGDLEDPQDAIPKGTMLAIFITTVAYIGVAICVGACVVRDATGSMNDTIISGMNCNGSAACGLGYDFSRCRHEPCQYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIYKALQFFAKGYGKNNEPLRGYFLTFVIAMAFILIAELNTIAPIISNFFLASYALINFSCFHASYAKSPGWRPAYGIYNMWVSLFGAILCCAVMFVINWWAAVITYVIEFFLYIYVTYKKPDVNWGSSTQALSYVSALDNALELTTVEDHVKNFRPQCIVLTGGPMSRPALLDITHAFTKNSGLCICCEVFVGPRKLCVKEMNSGMAKKQAWLIKNKIKAFYAAVAADCFRDGVRSLLQASGLGRMKPNTLVIGYKKNWRKAPLTEIENYVGIIHDAFDFEIGVVIVRISQGFDISHVLQVQDELEKLEQERLALEATIKDNECEEGSGGIRGLFKKAGKLNITKTTPKKDSSINTIQSMHVGEFNQKLVEASTQFKKKQGKGTIDVWWLFDDGGLTLLIPYILTLRKKWKDCKLRIYVGGKINRIEEEKIAMASLLSKFRIKFADIHIIGDINIKPNKESWKVFEEMIEPYRLHESCKDLTTAEKLKRETPWKITDAELEAVKEKSYRQVRLNELLQEHSRAANLIVLSLPVARKGSISDWLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS", "length": 1100, "header": "tr|A0A287BI72-1|F1SN65_PIG Computationally mapped isoform of Solute carrier family 12 member 1 OS=Sus scrofa OX=9823 GN=SLC12A1 PE=3 SV=1 CANONICAL=F1SN65-1" }, "locus": { "chromosome": "1", "start_pos": 123570182, "end_pos": 123482565, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059650.1", "url": "https://www.ensembl.org/id/ENSSSCT00000059650.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056300.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056300.1" } ] } }, { "isoform_ac": "F1SN65-1", "url": "https://www.uniprot.org/uniprotkb/F1SN65/entry#F1SN65-1", "sequence": { "sequence": "MSLNNSSNAFLDSGPGNTNRFQVNVISESHESSAAVNSNADPPHYEETSFGDESQNRFRISFRPGNQECYDNFLQNGEMAKTDASFHAYDSHTNTYYLQTFGHNTVDAVPKIEYYRNTGSISGPKVNRPSLLEIHEQLAKNVAVAPGSADVVANGDGMPGDERSENKEEEDQTGGVKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVLIILLSTMVTSITGLSTSAIATNGFVRGGGAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVVDLLKESDSMMVDPTNDIRIIGSITVVILLGISVAGMEWEAKAQVILLVILLIAIANFFIGTVIPSNSEKKSRGFFNYQASIFAENFGPSFTKGEGFFSVFAIFFPAATGILAGANISGDLEDPQDAIPKGTMLAIFITTVAYIGVAICVGACVVRDATGSMNDTIISGMNCNGSAACGLGYDFSRCRHEPCQYGLMNNFQVMSMVSGFGPLITAGIFSATLSSALASLVSAPKVFQALCKDNIYKALQFFAKGYGKNNEPLRGYFLTFVIAMAFILIAELNTIAPIISNFFLASYALINFSCFHASYAKSPGWRPAYGIYNMWVSLFGAILCCAVMFVINWWAAVITYVIEFFLYIYVTYKKPDVNWGSSTQALSYVSALDNALELTTVEDHVKNFRPQCIVLTGGPMSRPALLDITHAFTKNSGLCICCEVFVGPRKLCVKEMNSGMAKKQAWLIKNKIKAFYAAVAADCFRDGVRSLLQASGLGRMKPNTLVIGYKKNWRKAPLTEIENYVGIIHDAFDFEIGVVIVRISQGFDISHVLQVQDELEKLEQERLALEATIKDNECEEGSGGIRGLFKKAGKLNITKTTPKKDSSINTIQSMHVGEFNQKLVEASTQFKKKQGKGTIDVWWLFDDGGLTLLIPYILTLRKKWKDCKLRIYVGGKINRIEEEKIAMASLLSKFRIKFADIHIIGDINIKPNKESWKVFEEMIEPYRLHESCKDLTTAEKLKRETPWKITDAELEAVKEKSYRQVRLNELLQEHSRAANLIVLSLPVARKGSISDWLYMAWLEILTKNLPPVLLVRGNHKNVLTFYS", "length": 1100, "header": "tr|F1SN65-1|F1SN65_PIG Isoform 1 of Solute carrier family 12 member 1 OS=Sus scrofa OX=9823 GN=SLC12A1 PE=3 SV=5 CANONICAL=F1SN65-1" }, "locus": { "chromosome": "1", "start_pos": 123570182, "end_pos": 123482565, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005145.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005145.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005019.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005019.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B828", "url": "https://www.uniprot.org/uniprotkb/A0A287B828" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154291", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154291", "resource": "KEGG Pathway" }, { "id": "R-SSC-426117", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-426117", "resource": "Reactome", "description": "Cation-coupled Chloride cotransporters" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular exosome", "id": "GO:0070062", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070062", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cell volume homeostasis", "id": "GO:0006884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006884", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" }, { "name": "chloride transmembrane transport", "id": "GO:1902476", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902476", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" }, { "name": "sodium ion transmembrane transport", "id": "GO:0035725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035725", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" }, { "name": "potassium ion homeostasis", "id": "GO:0055075", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055075", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" }, { "name": "sodium ion homeostasis", "id": "GO:0055078", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055078", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" }, { "name": "potassium ion import across plasma membrane", "id": "GO:1990573", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990573", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" }, { "name": "chloride ion homeostasis", "id": "GO:0055064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055064", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sodium:potassium:chloride symporter activity", "id": "GO:0008511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008511", "evidence": [ { "database": "UniProtKB", "id": "F1SN65", "url": "https://www.uniprot.org/uniprotkb/F1SN65" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" }, { "start_pos": 447, "end_pos": 449, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" }, { "start_pos": 584, "end_pos": 586, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 869, "end_pos": 871, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SN65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN65" }, { "id": "PF08403", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08403" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid permease N-terminal", "eco_id": "ECO_0000259", "start_pos": 90, "end_pos": 157, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SN65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN65" }, { "id": "PF00324", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00324" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid permease/ SLC12A", "eco_id": "ECO_0000259", "start_pos": 183, "end_pos": 686, "start_aa": "Gly", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SN65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN65" }, { "id": "PF03522", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03522" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SLC12A transporter C-terminal", "eco_id": "ECO_0000259", "start_pos": 695, "end_pos": 1100, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 400, "end_pos": 402 }, { "start_pos": 447, "end_pos": 449 }, { "start_pos": 457, "end_pos": 459 }, { "start_pos": 4, "end_pos": 6 }, { "start_pos": 584, "end_pos": 586 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 869, "end_pos": 871 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SL05-1", "uniprot_ac": "F1SL05", "uniprot_id": "F1SL05_PIG", "mass": { "chemical_mass": 73504.0, "monoisotopic_mass": 73504.0 }, "refseq": {}, "gene_names": [ { "name": "DYRK4", "type": "recommended", "evidence": [ { "id": "F1SL05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL05" } ] } ], "protein_names": [ { "name": "Dual specificity tyrosine-phosphorylation-regulated kinase 4", "type": "recommended", "evidence": [ { "id": "F1SL05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL05/entry#names_and_taxonomy" } ] }, { "name": "2.7.12.1", "type": "synonym", "evidence": [ { "id": "F1SL05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL05/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Possible non-essential role in spermiogenesis.", "evidence": [ { "database": "UniProtKB", "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05#function" }, { "database": "UniProtKB", "id": "ARBA00056550", "url": "https://www.uniprot.org/uniprotkb/ARBA00056550#function" }, { "database": "UniProtKB", "id": "A0A287BEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEY1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DYRK4", "url": "https://www.uniprot.org/uniprotkb/F1SL05", "locus": { "chromosome": "5", "start_pos": 65812243, "end_pos": 65870092, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000721", "url": "https://www.ensembl.org/id/ENSSSCG00000000721" } ] } } ], "crossref": [ { "id": "F1SL05", "url": "https://alphafold.ebi.ac.uk/entry/F1SL05", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000721", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000721", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14225", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14225", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042521", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042521", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24058", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24058", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24058:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24058:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "10596", "url": "https://www.rhea-db.org/rhea/10596", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL05-1", "url": "https://www.uniprot.org/uniprotkb/F1SL05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQLLPPPTPTATKTAMDAKKPRKCSLTSFPILKARKKQNLTAVKVESKPLLQIQKPPSKIKNFRRTRFLNKNTNTCFTSLPSVDTQGKKNMVSFPHISSQIPLKPPLLSQENQTHRQVPSSELKASETPFPPSIKTQDPKPEEKPPKKHMHKVPLTAAEALKFFKNQLSSYEKSEILGYTELWFLGLEAEKLHMAPEKFSKSSFDDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNTYNVVHMKDFFYFRNHLCITFELLGINLYELMKTNSFQGFSLSIIRRFTLSVLKCLQMLYVEKIIHCDLKPENIVLYQKGQVTVKVIDFGSSCYEHQKVYTYIQSRFYRSPEVILGHPYNMAIDMWSLGCIMAELYTGYPLFAGENEVEQLACIMEVLGLPPTRFIQTASRRQTFFDSKGFPKNITNNRGKKRYPDSKDLTMVLKTYDTSFLDFLRRCLVWEPSLRMTPDQALKHAWIHEPPNLKVRPRLQTLRKTSLCFPSESKKDKVQGQHRLGKKDMILKGDTKDKIKDNTTKRDQNPGNQRGSLQPTAEVIQLPHLAEASRKSEAVLGPAESKTSTGQQNKNSSPKNTNILPPIV", "length": 640, "header": "tr|F1SL05-1|F1SL05_PIG Isoform 1 of Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Sus scrofa OX=9823 GN=DYRK4 PE=3 SV=3 CANONICAL=F1SL05-1" }, "isoforms": [ { "isoform_ac": "A0A287BEY1-1", "url": "https://www.uniprot.org/uniprotkb/F1SL05/entry#A0A287BEY1-1", "sequence": { "sequence": "MDAKKPRKCSLTSFPILKARKKQNLTAVKVESKPLLQIQKPPSKIKNFRRTRFLNKNTNTCFTSLPSVDTQGKKNMVSFPHISSQIPLKPPLLSQENQTHRQVPSSELKASETPFPPSIKTQDPKPEEKPPKKHMHKVPLTAAEALKFFKNQLSSYEKSEILGYTELWFLGLEAEKLHMAPEKFSKSSFDDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNTYNVVHMKDFFYFRNHLCITFELLGINLYELMKTNSFQGFSLSIIRRFTLSVLKCLQMLYVEKIIHCDLKPENIVLYQKGQVTVKVIDFGSSCYEHQKVYTYIQSRFYRSPEVILGHPYNMAIDMWSLGCIMAELYTGYPLFAGENEVEQLACIMEVLGLPPTRFIQTASRRQTFFDSKGFPKNITNNRGKKRYPDSKDLTMVLKTYDTSFLDFLRRCLVWEPSLRMTPDQALKHAWIHEPPNLKVRPRLQTLRKTSLCFPSESKKDKVQGQHRLGKKVDMILKGDTKDKIKDNTTKRDQNPGNQRGSLQPTAEVIQLPHLAEASRKSEAVLGPAESKTSTGQQNKNSSPKNTNILPPIV", "length": 626, "header": "tr|A0A287BEY1-1|F1SL05_PIG Computationally mapped isoform of Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Sus scrofa OX=9823 GN=DYRK4 PE=3 SV=3 CANONICAL=F1SL05-1" }, "locus": { "chromosome": "5", "start_pos": 65866545, "end_pos": 65816420, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043775.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043775.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055091.3", "url": "https://www.ensembl.org/id/ENSSSCP00000055091.3" } ] } }, { "isoform_ac": "F1SL05-1", "url": "https://www.uniprot.org/uniprotkb/F1SL05/entry#F1SL05-1", "sequence": { "sequence": "MQLLPPPTPTATKTAMDAKKPRKCSLTSFPILKARKKQNLTAVKVESKPLLQIQKPPSKIKNFRRTRFLNKNTNTCFTSLPSVDTQGKKNMVSFPHISSQIPLKPPLLSQENQTHRQVPSSELKASETPFPPSIKTQDPKPEEKPPKKHMHKVPLTAAEALKFFKNQLSSYEKSEILGYTELWFLGLEAEKLHMAPEKFSKSSFDDEHGSYMKVLHDHIAYRYEVLEMIGKGSFGQVAKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNTYNVVHMKDFFYFRNHLCITFELLGINLYELMKTNSFQGFSLSIIRRFTLSVLKCLQMLYVEKIIHCDLKPENIVLYQKGQVTVKVIDFGSSCYEHQKVYTYIQSRFYRSPEVILGHPYNMAIDMWSLGCIMAELYTGYPLFAGENEVEQLACIMEVLGLPPTRFIQTASRRQTFFDSKGFPKNITNNRGKKRYPDSKDLTMVLKTYDTSFLDFLRRCLVWEPSLRMTPDQALKHAWIHEPPNLKVRPRLQTLRKTSLCFPSESKKDKVQGQHRLGKKDMILKGDTKDKIKDNTTKRDQNPGNQRGSLQPTAEVIQLPHLAEASRKSEAVLGPAESKTSTGQQNKNSSPKNTNILPPIV", "length": 640, "header": "tr|F1SL05-1|F1SL05_PIG Isoform 1 of Dual specificity tyrosine-phosphorylation-regulated kinase 4 OS=Sus scrofa OX=9823 GN=DYRK4 PE=3 SV=3 CANONICAL=F1SL05-1" }, "locus": { "chromosome": "5", "start_pos": 65869893, "end_pos": 65816420, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000784.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000784.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000768.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000768.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 10, "start_aa": "Thr", "end_pos": 10, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr10", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 8, "start_aa": "Thr", "end_pos": 8, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr8", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BEY1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEY1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05" } ], "pmid": "" }, { "name": "protein serine/threonine/tyrosine kinase activity", "id": "GO:0004712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004712", "evidence": [ { "database": "UniProtKB", "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SL05", "url": "https://www.uniprot.org/uniprotkb/F1SL05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 574, "end_pos": 576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 627, "end_pos": 629, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10596", "name": "", "equation": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10596", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10596" } ] }, { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SL05-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 640, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SL05-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SL05" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SL05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL05" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 223, "end_pos": 519, "start_aa": "Tyr", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 8, 10 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 39, "end_pos": 41 }, { "start_pos": 465, "end_pos": 467 }, { "start_pos": 574, "end_pos": 576 }, { "start_pos": 627, "end_pos": 629 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIS9-1", "uniprot_ac": "F1SIS9", "uniprot_id": "F1SIS9_PIG", "mass": { "chemical_mass": 40421.0, "monoisotopic_mass": 40421.0 }, "refseq": { "ac": "XP_003133833", "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133833" }, "gene_names": [ { "name": "NDUFA10", "type": "recommended", "evidence": [ { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ] }, { "name": "NDUFA10", "type": "synonym", "evidence": [ { "id": "XP_003133833", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133833" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9/entry#names_and_taxonomy" } ] }, { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_003133833", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133833" } ] } ], "function": [ { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FAV6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAV6#function" }, { "database": "UniProtKB", "id": "ARBA00003195", "url": "https://www.uniprot.org/uniprotkb/ARBA00003195#function" }, { "database": "UniProtKB", "id": "PIRNR000543", "url": "https://www.uniprot.org/uniprotkb/PIRNR000543#function" }, { "database": "UniProtKB", "id": "A0A8W4F8J2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8J2#function" }, { "database": "UniProtKB", "id": "A0A8W4FPJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ5#function" }, { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFA10", "url": "https://www.uniprot.org/uniprotkb/F1SIS9", "locus": { "chromosome": "15", "start_pos": 138986421, "end_pos": 139031897, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016349", "url": "https://www.ensembl.org/id/ENSSSCG00000016349" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016349", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016349", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02030", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02030", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521478", "url": "https://www.ncbi.nlm.nih.gov/gene/100521478", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "5GPN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GPN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GUP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V30&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V33&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V3M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VC0&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VWL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY9&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYE&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYG&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZ8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W00&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1T&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1V&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1Z&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W20&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W35&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4J&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4N&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4Q&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UD1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UD1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UER", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UER&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UES", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UES&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UET", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UET&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEX", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEX&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEY", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEY&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZO8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZOU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZP8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSK&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSM&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZXZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BUH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BWD&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BXV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CD6&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CDN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CE2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6W&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR015828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521478", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521478", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DPHNKKM", "url": "https://omabrowser.org/oma/group/DPHNKKM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIS9", "url": "https://www.orthodb.org/?gene=F1SIS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10513", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10513", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10513:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10513:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005gpn", "url": "https://www.rcsb.org/structure/pdb_00005gpn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005gup", "url": "https://www.rcsb.org/structure/pdb_00005gup", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2c", "url": "https://www.rcsb.org/structure/pdb_00007v2c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2d", "url": "https://www.rcsb.org/structure/pdb_00007v2d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2e", "url": "https://www.rcsb.org/structure/pdb_00007v2e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2f", "url": "https://www.rcsb.org/structure/pdb_00007v2f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2h", "url": "https://www.rcsb.org/structure/pdb_00007v2h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2k", "url": "https://www.rcsb.org/structure/pdb_00007v2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2r", "url": "https://www.rcsb.org/structure/pdb_00007v2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v30", "url": "https://www.rcsb.org/structure/pdb_00007v30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v31", "url": "https://www.rcsb.org/structure/pdb_00007v31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v32", "url": "https://www.rcsb.org/structure/pdb_00007v32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v33", "url": "https://www.rcsb.org/structure/pdb_00007v33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v3m", "url": "https://www.rcsb.org/structure/pdb_00007v3m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbl", "url": "https://www.rcsb.org/structure/pdb_00007vbl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbp", "url": "https://www.rcsb.org/structure/pdb_00007vbp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vc0", "url": "https://www.rcsb.org/structure/pdb_00007vc0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vwl", "url": "https://www.rcsb.org/structure/pdb_00007vwl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxs", "url": "https://www.rcsb.org/structure/pdb_00007vxs", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy1", "url": "https://www.rcsb.org/structure/pdb_00007vy1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy9", "url": "https://www.rcsb.org/structure/pdb_00007vy9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vye", "url": "https://www.rcsb.org/structure/pdb_00007vye", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyg", "url": "https://www.rcsb.org/structure/pdb_00007vyg", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyi", "url": "https://www.rcsb.org/structure/pdb_00007vyi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vys", "url": "https://www.rcsb.org/structure/pdb_00007vys", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vz8", "url": "https://www.rcsb.org/structure/pdb_00007vz8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzv", "url": "https://www.rcsb.org/structure/pdb_00007vzv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzw", "url": "https://www.rcsb.org/structure/pdb_00007vzw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w00", "url": "https://www.rcsb.org/structure/pdb_00007w00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0h", "url": "https://www.rcsb.org/structure/pdb_00007w0h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0r", "url": "https://www.rcsb.org/structure/pdb_00007w0r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0y", "url": "https://www.rcsb.org/structure/pdb_00007w0y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1o", "url": "https://www.rcsb.org/structure/pdb_00007w1o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1p", "url": "https://www.rcsb.org/structure/pdb_00007w1p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1t", "url": "https://www.rcsb.org/structure/pdb_00007w1t", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1u", "url": "https://www.rcsb.org/structure/pdb_00007w1u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1v", "url": "https://www.rcsb.org/structure/pdb_00007w1v", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1z", "url": "https://www.rcsb.org/structure/pdb_00007w1z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w20", "url": "https://www.rcsb.org/structure/pdb_00007w20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2k", "url": "https://www.rcsb.org/structure/pdb_00007w2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2l", "url": "https://www.rcsb.org/structure/pdb_00007w2l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2r", "url": "https://www.rcsb.org/structure/pdb_00007w2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2u", "url": "https://www.rcsb.org/structure/pdb_00007w2u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2y", "url": "https://www.rcsb.org/structure/pdb_00007w2y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w31", "url": "https://www.rcsb.org/structure/pdb_00007w31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w32", "url": "https://www.rcsb.org/structure/pdb_00007w32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w35", "url": "https://www.rcsb.org/structure/pdb_00007w35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4c", "url": "https://www.rcsb.org/structure/pdb_00007w4c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4d", "url": "https://www.rcsb.org/structure/pdb_00007w4d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4e", "url": "https://www.rcsb.org/structure/pdb_00007w4e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4f", "url": "https://www.rcsb.org/structure/pdb_00007w4f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4g", "url": "https://www.rcsb.org/structure/pdb_00007w4g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4j", "url": "https://www.rcsb.org/structure/pdb_00007w4j", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4k", "url": "https://www.rcsb.org/structure/pdb_00007w4k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4l", "url": "https://www.rcsb.org/structure/pdb_00007w4l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4m", "url": "https://www.rcsb.org/structure/pdb_00007w4m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4n", "url": "https://www.rcsb.org/structure/pdb_00007w4n", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4q", "url": "https://www.rcsb.org/structure/pdb_00007w4q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ud1", "url": "https://www.rcsb.org/structure/pdb_00008ud1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueo", "url": "https://www.rcsb.org/structure/pdb_00008ueo", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uep", "url": "https://www.rcsb.org/structure/pdb_00008uep", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueq", "url": "https://www.rcsb.org/structure/pdb_00008ueq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uer", "url": "https://www.rcsb.org/structure/pdb_00008uer", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ues", "url": "https://www.rcsb.org/structure/pdb_00008ues", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uet", "url": "https://www.rcsb.org/structure/pdb_00008uet", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueu", "url": "https://www.rcsb.org/structure/pdb_00008ueu", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uev", "url": "https://www.rcsb.org/structure/pdb_00008uev", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uew", "url": "https://www.rcsb.org/structure/pdb_00008uew", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uex", "url": "https://www.rcsb.org/structure/pdb_00008uex", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uey", "url": "https://www.rcsb.org/structure/pdb_00008uey", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uez", "url": "https://www.rcsb.org/structure/pdb_00008uez", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugh", "url": "https://www.rcsb.org/structure/pdb_00008ugh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugi", "url": "https://www.rcsb.org/structure/pdb_00008ugi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugj", "url": "https://www.rcsb.org/structure/pdb_00008ugj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugn", "url": "https://www.rcsb.org/structure/pdb_00008ugn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugr", "url": "https://www.rcsb.org/structure/pdb_00008ugr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zo8", "url": "https://www.rcsb.org/structure/pdb_00008zo8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zou", "url": "https://www.rcsb.org/structure/pdb_00008zou", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zp8", "url": "https://www.rcsb.org/structure/pdb_00008zp8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsk", "url": "https://www.rcsb.org/structure/pdb_00008zsk", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsl", "url": "https://www.rcsb.org/structure/pdb_00008zsl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsm", "url": "https://www.rcsb.org/structure/pdb_00008zsm", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsn", "url": "https://www.rcsb.org/structure/pdb_00008zsn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zso", "url": "https://www.rcsb.org/structure/pdb_00008zso", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsq", "url": "https://www.rcsb.org/structure/pdb_00008zsq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsr", "url": "https://www.rcsb.org/structure/pdb_00008zsr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zxz", "url": "https://www.rcsb.org/structure/pdb_00008zxz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009buh", "url": "https://www.rcsb.org/structure/pdb_00009buh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bwd", "url": "https://www.rcsb.org/structure/pdb_00009bwd", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bxv", "url": "https://www.rcsb.org/structure/pdb_00009bxv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cd6", "url": "https://www.rcsb.org/structure/pdb_00009cd6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cdn", "url": "https://www.rcsb.org/structure/pdb_00009cdn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009ce2", "url": "https://www.rcsb.org/structure/pdb_00009ce2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6h", "url": "https://www.rcsb.org/structure/pdb_00009j6h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6w", "url": "https://www.rcsb.org/structure/pdb_00009j6w", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GPN", "url": "https://www.rcsb.org/structure/5GPN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.rcsb.org/structure/5GUP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.rcsb.org/structure/7V2C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.rcsb.org/structure/7V2D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.rcsb.org/structure/7V2E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.rcsb.org/structure/7V2F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.rcsb.org/structure/7V2H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.rcsb.org/structure/7V2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.rcsb.org/structure/7V2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.rcsb.org/structure/7V30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.rcsb.org/structure/7V31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.rcsb.org/structure/7V32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.rcsb.org/structure/7V33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.rcsb.org/structure/7V3M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.rcsb.org/structure/7VBL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.rcsb.org/structure/7VBP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.rcsb.org/structure/7VC0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.rcsb.org/structure/7VWL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.rcsb.org/structure/7VXS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.rcsb.org/structure/7VY1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.rcsb.org/structure/7VY9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.rcsb.org/structure/7VYE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.rcsb.org/structure/7VYG", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.rcsb.org/structure/7VYI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.rcsb.org/structure/7VYS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.rcsb.org/structure/7VZ8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.rcsb.org/structure/7VZV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.rcsb.org/structure/7VZW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.rcsb.org/structure/7W00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.rcsb.org/structure/7W0H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.rcsb.org/structure/7W0R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.rcsb.org/structure/7W0Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.rcsb.org/structure/7W1O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.rcsb.org/structure/7W1P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.rcsb.org/structure/7W1T", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.rcsb.org/structure/7W1U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.rcsb.org/structure/7W1V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.rcsb.org/structure/7W1Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.rcsb.org/structure/7W20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.rcsb.org/structure/7W2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.rcsb.org/structure/7W2L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.rcsb.org/structure/7W2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.rcsb.org/structure/7W2U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.rcsb.org/structure/7W2Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.rcsb.org/structure/7W31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.rcsb.org/structure/7W32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.rcsb.org/structure/7W35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.rcsb.org/structure/7W4C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.rcsb.org/structure/7W4D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.rcsb.org/structure/7W4E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.rcsb.org/structure/7W4F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.rcsb.org/structure/7W4G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.rcsb.org/structure/7W4J", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.rcsb.org/structure/7W4K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.rcsb.org/structure/7W4L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.rcsb.org/structure/7W4M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.rcsb.org/structure/7W4N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.rcsb.org/structure/7W4Q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UD1", "url": "https://www.rcsb.org/structure/8UD1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEO", "url": "https://www.rcsb.org/structure/8UEO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEP", "url": "https://www.rcsb.org/structure/8UEP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEQ", "url": "https://www.rcsb.org/structure/8UEQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UER", "url": "https://www.rcsb.org/structure/8UER", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UES", "url": "https://www.rcsb.org/structure/8UES", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UET", "url": "https://www.rcsb.org/structure/8UET", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEU", "url": "https://www.rcsb.org/structure/8UEU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEV", "url": "https://www.rcsb.org/structure/8UEV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEW", "url": "https://www.rcsb.org/structure/8UEW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEX", "url": "https://www.rcsb.org/structure/8UEX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEY", "url": "https://www.rcsb.org/structure/8UEY", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEZ", "url": "https://www.rcsb.org/structure/8UEZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.rcsb.org/structure/8UGH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.rcsb.org/structure/8UGI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.rcsb.org/structure/8UGJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.rcsb.org/structure/8UGN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.rcsb.org/structure/8UGR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.rcsb.org/structure/8ZO8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.rcsb.org/structure/8ZOU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.rcsb.org/structure/8ZP8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.rcsb.org/structure/8ZSK", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.rcsb.org/structure/8ZSL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.rcsb.org/structure/8ZSM", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.rcsb.org/structure/8ZSN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.rcsb.org/structure/8ZSO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.rcsb.org/structure/8ZSQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.rcsb.org/structure/8ZSR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.rcsb.org/structure/8ZXZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.rcsb.org/structure/9BUH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.rcsb.org/structure/9BWD", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.rcsb.org/structure/9BXV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.rcsb.org/structure/9CD6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.rcsb.org/structure/9CDN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.rcsb.org/structure/9CE2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.rcsb.org/structure/9J6H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.rcsb.org/structure/9J6W", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF01712", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01712", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6799198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003133833", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133833", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R3C0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3C0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3C0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3C0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8J2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8J2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAV6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIS9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALRLLRLAPASASAVPRGLGAVAQRVGGIHTGAPCRLQYGPLAFVLGERTTRKLTETSKVITVDGNICSGKGRLAREIAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTACEYLPPHVVVYVDVPVPEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAEDAEKVVEDIEYLKCDKGPWPDQDDRTFHRLRMLVQNKLEVLNYTTIPVYLPEITIGAHQSDRVFQKFTELPGRKYSPGYNEDVGDKWIWLK", "length": 357, "header": "tr|F1SIS9-1|F1SIS9_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFA10 PE=1 SV=1 CANONICAL=F1SIS9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R3C0-1", "url": "https://www.uniprot.org/uniprotkb/F1SIS9/entry#A0A5G2R3C0-1", "sequence": { "sequence": "MALRLLRLAPASASAVPRGLGAVAQRVGGIHTGAPCRLQYGPLAFVLGERTTRKLTETSKVITVDGNICSGKGRLAREIAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCELGRAGLPGRGVPAERPC", "length": 203, "header": "tr|A0A5G2R3C0-1|F1SIS9_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFA10 PE=1 SV=1 CANONICAL=F1SIS9-1" }, "locus": { "chromosome": "15", "start_pos": 139031798, "end_pos": 139027055, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088042.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088042.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065044.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065044.1" } ] } }, { "isoform_ac": "A0A8W4F8J2-1", "url": "https://www.uniprot.org/uniprotkb/F1SIS9/entry#A0A8W4F8J2-1", "sequence": { "sequence": "MALRLLRLAPASASAVPRGLGAVAQRVGGIHTGAPCRLQYGPLAFVLGERTTRKLTETSKVITVDGNICSGKGRLAREIAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTACEYLPPHVVVYVDVPVPEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAEDAEKVVEDIEYLKCDKGPWPDQDDRTFHRLRMLVQNKLEVLNYTTIPVYLPEITIGAHQSDRVFQKFTEACPAGTWPGRDLRVPSQQRPCGCS", "length": 359, "header": "tr|A0A8W4F8J2-1|F1SIS9_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFA10 PE=1 SV=1 CANONICAL=F1SIS9-1" }, "locus": { "chromosome": "15", "start_pos": 139031798, "end_pos": 138986421, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095837.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095837.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075135.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075135.1" } ] } }, { "isoform_ac": "A0A8W4FAV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SIS9/entry#A0A8W4FAV6-1", "sequence": { "sequence": "MALRLLRLAPASASAVPRGLGAVAQRVGGIHTGAPCRLQYGPLAFVLGERTTRKLTETSKVITVDGNICSGKGRLAREIAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTACEYLPPHVVVYVDVPVPEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAEDAEKVVEDIEYLKCDKGPWPDQDDRTFHRLRMLCQAASTARATTRTWGTSGSG", "length": 319, "header": "tr|A0A8W4FAV6-1|F1SIS9_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFA10 PE=1 SV=1 CANONICAL=F1SIS9-1" }, "locus": { "chromosome": "15", "start_pos": 139031798, "end_pos": 138999465, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101942.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101942.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076402.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076402.1" } ] } }, { "isoform_ac": "A0A8W4FPJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIS9/entry#A0A8W4FPJ5-1", "sequence": { "sequence": "MALRLLRLAPASASAVPRGLGAVAQRVGGIHTGAPCRLQYGPLAFVLGERTTRKLTETSKVITVDGNICSGKGRLAREIAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTACEYLPPHVVVYVDVPVPEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAEDAEKVVEDIEYLKCDKGPWPDQDDRTFHRLRMLVQNKLEVLNYTTIPVYLPEITIGAHQSDRVFQKFTEFSLFNFRRPDAIKIARSLCESGRVQGSCQ", "length": 364, "header": "tr|A0A8W4FPJ5-1|F1SIS9_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFA10 PE=1 SV=1 CANONICAL=F1SIS9-1" }, "locus": { "chromosome": "15", "start_pos": 139031798, "end_pos": 139004761, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098997.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098997.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081297.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081297.1" } ] } }, { "isoform_ac": "F1SIS9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIS9/entry#F1SIS9-1", "sequence": { "sequence": "MALRLLRLAPASASAVPRGLGAVAQRVGGIHTGAPCRLQYGPLAFVLGERTTRKLTETSKVITVDGNICSGKGRLAREIAEKLGLRHFPEAGIHYADSTTGDGKPLDVQLSGNCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVEHYNEVKKVTACEYLPPHVVVYVDVPVPEIQSRIQKKGNPHEMKITAAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAEDAEKVVEDIEYLKCDKGPWPDQDDRTFHRLRMLVQNKLEVLNYTTIPVYLPEITIGAHQSDRVFQKFTELPGRKYSPGYNEDVGDKWIWLK", "length": 357, "header": "tr|F1SIS9-1|F1SIS9_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFA10 PE=1 SV=1 CANONICAL=F1SIS9-1" }, "locus": { "chromosome": "15", "start_pos": 139031798, "end_pos": 138999460, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017804.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017804.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017323.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017323.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The architecture of the mammalian respirasome.", "journal": "Nature", "date": "2016", "authors": "Gu Jinke, Wu Meng, Guo Runyu, Yan Kaige, Lei Jianlin, Gao Ning, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "reference": [ { "type": "PubMed", "id": "27654917", "url": "https://glygen.org/publication/PubMed/27654917" } ] }, { "title": "Structure of Mammalian Respiratory Supercomplex I1III2IV1.", "journal": "Cell", "date": "2016", "authors": "Wu Meng, Gu Jinke, Guo Runyu, Huang Yushen, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "reference": [ { "type": "PubMed", "id": "27912063", "url": "https://glygen.org/publication/PubMed/27912063" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "The coupling mechanism of mammalian mitochondrial complex I.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Gu Jinke, Liu Tianya, Guo Runyu, Zhang Laixing, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "reference": [ { "type": "PubMed", "id": "35145322", "url": "https://glygen.org/publication/PubMed/35145322" } ] }, { "title": "High-resolution in situ structures of mammalian respiratory supercomplexes.", "journal": "Nature", "date": "2024", "authors": "Zheng Wan, Chai Pengxin, Zhu Jiapeng, Zhang Kai", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "reference": [ { "type": "PubMed", "id": "38811722", "url": "https://glygen.org/publication/PubMed/38811722" } ] } ], "pathway": [ { "id": "ssc:100521478", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521478", "resource": "KEGG Pathway" }, { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YLT3-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "NDUFA10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSLWRARLGPAAAATVTSAARGRLRSAVLPAASVHISSQRPLQYGWLAYMLGERASKKFSEYSKIFTVDGNLSSGKGKLAQHIADKLGMKYFPEADIHYQDRIAGDGTLLDERFNGFCNLERFYNDPKCPDGHSYRLQAWLFGNRILQYSDALEHLLTTGQGVVLERSPYSDFVFLDAMFKQGYIHKRCVDHYKEIKEISICEFLPPHLVIYLDVPVPDVQKRLQEKGEPYEKKVSASYLQNIEDAYKKTFIPEMSETSEILHYTASEAEDVEKVIEDIEYLKFDKGPWLEQDDVSFHHLRLFVQDKDGVLDPVAIPRFIPEITIGGTEYDKIYYEFRSWKAPLSISNPAGADVHLLRLLGLSGGISAPT", "length": 370 }, "evidence": [ { "id": "F1SIS9", "url": "https://omabrowser.org/oma/group/F1SIS9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7FAQ6-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALRLLRLVPATASARGPAAGVQRVGQIHTSVQNQMKYGALAFMLGEKTTKKLTEYSRVITVDGNICSGKSKLAKDIAEKLGMRHFPEADVQYSSSTTGDGRPLSTEFNGSCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFVEAMYNQGYIRKECVDHYNEVKQLTLPEYLPPHAVIYIDVPVPEIKSRIQKKGDPHEMKVTSAYLQDIENAYKNTFLPQMSEQCEVLVYNTWESEDSTKVVEDIEYLNYNKGPWLKQDDRTFHHLRMLVQDKMDVLNYTTIPIYLPEITVGPHQGTRIYNSFKQCPPTKLYSAARMAEKTVEAADSNHTFLCLHIFLTSLCSSIGVKSHFQPFSQGSEA", "length": 388 }, "evidence": [ { "id": "F1SIS9", "url": "https://omabrowser.org/oma/group/F1SIS9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9SAR7-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "NDUFA10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "GAVVTTGPGAASAPHTAPPQNPRRAGLPLGSRRREDRPSESRRRSSLPWEPGRREDNPSELTPQNSGCGQALRRRVEADAKGDPWRTSPRLRAVRLHSPPEHSRQARRGHPSRDVTAARRQRERTLSRPRPLGSLSRCRQRSHGLEAAETCPTARGLKHFPEAGIHYVDSTTGDGKPLPVQFSGNCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVDHYNQVKKVTICEYLPPHVVVYVDVPVPEVQSRIQKKGNPHEMKITSAYLQDIENAYKGTFLPEMSEKCEVLQYSAWEAQDAEKVVEDIEYLKYDKGPWLDQNDRKLHKLRMLVQDKLEVLNYTSIPVFLPEVTVGAHQSDQVFQEFTELPGRKYRAGYNEDVGDKWIWLK", "length": 429 }, "evidence": [ { "id": "F1SIS9", "url": "https://omabrowser.org/oma/group/F1SIS9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O95299-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "NDUFA10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIRKQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENAYKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQDKFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1SIS9", "url": "https://omabrowser.org/oma/group/F1SIS9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P91929-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "ND-42", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTAVFRVGLVRLVSRATQSPNLLQAQTNALPAAFQQRCSISGKTMRGGPRVPKAAPYPYKTKKYSVFNAIFDKTSKRFDENSKVICVEGPIAAGKSKFAKELAEELDMEYYPAVDLDLIYINSYGYDMRKLDPQLPPSCRSYDVRNFCLDPSHDLAAQFQIRMYMLRYSQYIDALQHVLSTGQGVVLERSPYSDFVFMEAMFRQGYLSRGARSVYNELRQNTIGELLKPHLVIYLDLPVDAVKKQIKARNVDYEVQSKVFSDAYLSDLEQLYKQQYLKDISTHAELLIYDWTAGGETEVVVEDIERIDFNQFEADIHNKKMLDWRFPLEAEWCEARIKYCHEKPDLMNYFNVPRFDVPELVRSADDGKVWRDVWFNAPGMKYRPGYNADMGDEGLLTKTKIGINQGI", "length": 407 }, "evidence": [ { "id": "F1SIS9", "url": "https://omabrowser.org/oma/group/F1SIS9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1SIS9", "url": "https://omabrowser.org/oma/group/F1SIS9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99LC3-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALRLLRLVPASAPARGLAAGAQRVGRIHTSVHCKLRYGLLAAILGDKTTKKLHEYSRVITVDGNICSGKNKLAKEIAQQLGMKHYPEAGIQYSSTTTGDGRPLDIEFSGSCSLEKFYDDPKSNDGNSYRLQSWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGYIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVPEVQSRIQKKGDPHEMKVTSAYLQDIENAYKKTFLPKMSEMCEVLVYDSWEAEDPTKVVEDIEYLKYNKGPWLKQDDWTFHYLRMLVQDKTEVLNYTTIPVYLPEITIGAHQGSRIYNSFRELPGRKYAPGYNAEVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1SIS9", "url": "https://omabrowser.org/oma/group/F1SIS9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial electron transport, NADH to ubiquinone", "id": "GO:0006120", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006120", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "NADH dehydrogenase (ubiquinone) activity", "id": "GO:0008137", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008137", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SIS9", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" }, { "id": "PF01712", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01712" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Deoxynucleoside kinase", "eco_id": "ECO_0000259", "start_pos": 62, "end_pos": 275, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9#function" }, { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" }, { "id": "8UD1", "database": "PDB", "url": "https://www.rcsb.org/structure/8UD1" } ], "binding_site_uniprot": 162, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 162, "end_pos": 162, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9#function" }, { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" }, { "id": "8UGN", "database": "PDB", "url": "https://www.rcsb.org/structure/8UGN" } ], "binding_site_uniprot": 67, "amino_acid": "Asn", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 67, "end_pos": 67, "start_aa": "Asn", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9#function" }, { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" }, { "id": "8UGN", "database": "PDB", "url": "https://www.rcsb.org/structure/8UGN" } ], "binding_site_uniprot": 69, "amino_acid": "Cys", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 69, "end_pos": 69, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9#function" }, { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" }, { "id": "8UD1", "database": "PDB", "url": "https://www.rcsb.org/structure/8UD1" } ], "binding_site_uniprot": 72, "amino_acid": "Lys", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 72, "end_pos": 72, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9#function" }, { "id": "F1SIS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIS9" }, { "id": "8UD1", "database": "PDB", "url": "https://www.rcsb.org/structure/8UD1" }, { "id": "8UEO", "database": "PDB", "url": "https://www.rcsb.org/structure/8UEO" } ], "binding_site_uniprot": 90, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 90, "end_pos": 90, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 308, "end_pos": 310 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG66-1", "uniprot_ac": "F1SG66", "uniprot_id": "F1SG66_PIG", "mass": { "chemical_mass": 80298.0, "monoisotopic_mass": 80298.0 }, "refseq": {}, "gene_names": [ { "name": "MX2", "type": "recommended", "evidence": [ { "id": "F1SG66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ] } ], "protein_names": [ { "name": "Interferon-induced GTP-binding protein Mx2", "type": "recommended", "evidence": [ { "id": "F1SG66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG66/entry#names_and_taxonomy" } ] }, { "name": "Myxovirus resistance protein 2", "type": "synonym", "evidence": [ { "id": "F1SG66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG66/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MX2", "url": "https://www.uniprot.org/uniprotkb/F1SG66", "locus": { "chromosome": "13", "start_pos": 204831957, "end_pos": 204798629, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012076", "url": "https://www.ensembl.org/id/ENSSSCG00000012076" } ] } } ], "crossref": [ { "id": "F1SG66", "url": "https://alphafold.ebi.ac.uk/entry/F1SG66", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012076", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012076", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08771", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08771", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000375", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000375", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001401", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001401", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019762", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019762", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030381", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030381", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11566", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11566", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11566:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11566:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00350", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00350", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02212", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02212", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5S6I9M5", "url": "https://www.uniprot.org/uniprotkb/A0A5S6I9M5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5S6I9M5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5S6I9M5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A900QS59", "url": "https://www.uniprot.org/uniprotkb/A0A900QS59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A900QS59-1", "url": "https://www.uniprot.org/uniprotkb/A0A900QS59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B2B9J8", "url": "https://www.uniprot.org/uniprotkb/B2B9J8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "B2B9J8-1", "url": "https://www.uniprot.org/uniprotkb/B2B9J8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG66-1", "url": "https://www.uniprot.org/uniprotkb/F1SG66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPKPRMSWPYQRHRQASSPPHPHKEMNFFPQQPLPLGAGPGQMTFPLNWQMGGKDLTKGLNMLTLSPQQPGGKSGQQTSKGPENNLYSPFEEKVRPCIDLIDSLRALGVEQDLALPTIAVIGDQSSGKSSVLEALSGVPLPRGSGIITRCPLALRLKKKECPWQGRISYRKVELQLQDPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDTGAEKVVLNVMQNLTYHLKKGYMIVKCRGQQEILNKLSLAEATKREIAFFHSHPHFRILLEEGKATVPRLAERLTVELIGHISKSLPLLFSQIKEIHQSATEELRLCGASVPSNDADKMFFLIEKIKVFNQDIENLAEGEEIVKEKEARLYNKIREEFKSWIVTLDCNSKKVKNIIHEEVSKYDRQYRGKELMGFVSYKTFESIVRQYLEELVDPALGMLQTVVEIVRQTFSDTAQKNFGEFSNLNQTTQNKVDSIAARAAERAEGLIRLQFRMEQLVFCQDDIYRVDLKAVREELFNPVAEHPQSLQLRLPFVNGPSPVSSITEIGVHVNAYFMGTSQRLANQIPFIIQYCVLQESRDHLQKAMMQMLQGREQYSWLLQEESHTSAKRHFLKEKIHRLAEARHTLSKFAITGVN", "length": 711, "header": "tr|F1SG66-1|F1SG66_PIG Isoform 1 of Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa OX=9823 GN=MX2 PE=3 SV=4 CANONICAL=F1SG66-1" }, "isoforms": [ { "isoform_ac": "A0A5S6I9M5-1", "url": "https://www.uniprot.org/uniprotkb/F1SG66/entry#A0A5S6I9M5-1", "sequence": { "sequence": "MPKPRMSWPYQRHRQASSPPHPHKEMNFFPQQPLPLGAGPGQMTFPLNWQMGGKDLTKGLNMLTLSPQQPGGKSGQQTSKGPENNLYSPFEEKVRPCIDLIDSLRALGVEQDLALPTIAVIGDQSSGKSSVLEALSGVPLPRGSGIITRCPLALRLKKKECPWQGRISYRKVELQLQDPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDTGAEKVVLNVMQNLTYHLKKGYMIVKCRGQQEILNKLSLAEATKREIAFFHSHPHFRILLEEGKATVPRLAERLTVELIGHISKIKVFNQDIENLAEGEEIVKEKEARLYNKIREEFKSWIVTLDCNSKKVKNIIHEEVSKYDRQYRGKELMGFVSYKTFESIVRQYLEELVDPALGMLQTVVEIVRQTFSDTAQKNFGEFSNLNQTTQNKVDSIAARAAERAEGLIRLQFRMEQLVFCQDDIYRVDLKAVREELFNPVAEHPQSLQLRLPFVNGPSPVSSITEIGVHVNAYFMGTSQRLANQIPFIIQYCVLQESRDHLQKAMMQMLQGREQYSWLLQEESHTSAKRHFLKEKIHRLAEARHTLSKFAQSLQG", "length": 670, "header": "tr|A0A5S6I9M5-1|F1SG66_PIG Computationally mapped isoform of Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa OX=9823 GN=MX2 PE=3 SV=1 CANONICAL=F1SG66-1" }, "locus": { "chromosome": "13", "start_pos": 204829373, "end_pos": 204805342, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055212.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055212.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054576.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054576.2" } ] } }, { "isoform_ac": "A0A900QS59-1", "url": "https://www.uniprot.org/uniprotkb/F1SG66/entry#A0A900QS59-1", "sequence": { "sequence": "MPKPRMSWPYQRHRQASSPPHPHKEMNFFPQQPLPLGAGPGQMTFPLNWQMGGKDLTKGLNMLTLSPQQPGGKSGQQTSKGPENNLYSPFEEKVRPCIDLIDSLRALGVEQDLALPTIAVIGDQSSGKSSVLEALSGVPLPRGSGIITRCPLALRLKKKECPWQGRISYRKVELQLQDPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDTGAEKVVLNVMQNLTYHLKKGYMIVKCRGQQEILNKLSLAEATKREIAFFHSHPHFRILLEEGKATVPRLAERLTVELIGHISKSLPLLFSQIKEIHQSATEELRLCGASVPSNDADKMFFLIEKIKVFNQDIENLAEGEEIVKEKEARLYNKIREEFKSWIVTLDCNSKKVKNIIHEEVSKYDRQYRGKELMGFVSYKTFESIVRQYLEELVDPALGMLQTVVNKVDSIAARAAERAEGLIRLQFRMEQLVFCQDDIYRVDLKAVREELFNPVAEHPQSLQLRLPFVNGPSPVSSITEIGVHVNAYFMGTSQRLANQIPFIIQYCVLQESRDHLQKAMMQMLQGREQYSWLLQEESHTSAKRHFLKEKIHRLAEARHTLSKFAITGVN", "length": 685, "header": "tr|A0A900QS59-1|F1SG66_PIG Computationally mapped isoform of Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa OX=9823 GN=MX2 PE=3 SV=1 CANONICAL=F1SG66-1" }, "locus": { "chromosome": "13", "start_pos": 204829379, "end_pos": 204805342, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060954.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060954.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055951.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055951.2" } ] } }, { "isoform_ac": "B2B9J8-1", "url": "https://www.uniprot.org/uniprotkb/F1SG66/entry#B2B9J8-1", "sequence": { "sequence": "MPKPRMSWPYQRHRQASSPPHPHKEMNFFPQQPLPLGAGPGQMTFPLNWQMGGKDLTKGLNMLTLSPQQPGGKSGQQTSKGPENNLYSPFEEKVRPCIDLIDSLRALGVEQDLALPTIAVIGDQSSGKSSVLEALSGVPLPRGSGIITRCPLALRLKKKECPWQGRISYRKVELQLQDPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDTGAEKVVLNVMQNLTYHLKKGYMIVKCRGQQEILNKLSLAEATKREIAFFHSHPHFRILLEEGKATVPRLAERLTVELIGHISVSWWVEVQGM", "length": 389, "header": "tr|B2B9J8-1|F1SG66_PIG Computationally mapped isoform of Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa OX=9823 GN=MX2 PE=3 SV=1 CANONICAL=F1SG66-1" }, "locus": { "chromosome": "13", "start_pos": 204820935, "end_pos": 204805342, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105470.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105470.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076011.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076011.1" } ] } }, { "isoform_ac": "F1SG66-1", "url": "https://www.uniprot.org/uniprotkb/F1SG66/entry#F1SG66-1", "sequence": { "sequence": "MPKPRMSWPYQRHRQASSPPHPHKEMNFFPQQPLPLGAGPGQMTFPLNWQMGGKDLTKGLNMLTLSPQQPGGKSGQQTSKGPENNLYSPFEEKVRPCIDLIDSLRALGVEQDLALPTIAVIGDQSSGKSSVLEALSGVPLPRGSGIITRCPLALRLKKKECPWQGRISYRKVELQLQDPSQVEREIRKAQDAIAGSGVGISHELISLEVTSPEVPDLTLIDLPGITRVAVGNQPQDIGLQIKALIRKYIQEQQTINLVVVPCNVDIATTEALRMAQEVDPEGDRTIGILTKPDLVDTGAEKVVLNVMQNLTYHLKKGYMIVKCRGQQEILNKLSLAEATKREIAFFHSHPHFRILLEEGKATVPRLAERLTVELIGHISKSLPLLFSQIKEIHQSATEELRLCGASVPSNDADKMFFLIEKIKVFNQDIENLAEGEEIVKEKEARLYNKIREEFKSWIVTLDCNSKKVKNIIHEEVSKYDRQYRGKELMGFVSYKTFESIVRQYLEELVDPALGMLQTVVEIVRQTFSDTAQKNFGEFSNLNQTTQNKVDSIAARAAERAEGLIRLQFRMEQLVFCQDDIYRVDLKAVREELFNPVAEHPQSLQLRLPFVNGPSPVSSITEIGVHVNAYFMGTSQRLANQIPFIIQYCVLQESRDHLQKAMMQMLQGREQYSWLLQEESHTSAKRHFLKEKIHRLAEARHTLSKFAITGVN", "length": 711, "header": "tr|F1SG66-1|F1SG66_PIG Isoform 1 of Interferon-induced GTP-binding protein Mx2 OS=Sus scrofa OX=9823 GN=MX2 PE=3 SV=4 CANONICAL=F1SG66-1" }, "locus": { "chromosome": "13", "start_pos": 204829378, "end_pos": 204805342, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013209.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013209.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012857.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012857.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5S6I9M5", "url": "https://www.uniprot.org/uniprotkb/A0A5S6I9M5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1169408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169408", "resource": "Reactome", "description": "ISG15 antiviral mechanism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "nuclear pore", "id": "GO:0005643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005643", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "regulation of nucleocytoplasmic transport", "id": "GO:0046822", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046822", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "synaptic vesicle budding from presynaptic endocytic zone membrane", "id": "GO:0016185", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016185", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" }, { "name": "response to interferon-alpha", "id": "GO:0035455", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035455", "evidence": [ { "database": "UniProtKB", "id": "F1SG66", "url": "https://www.uniprot.org/uniprotkb/F1SG66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG66-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 711, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG66-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG66" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG66" }, { "id": "PS51718", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51718" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dynamin-type G", "eco_id": "ECO_0000259", "start_pos": 112, "end_pos": 383, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SG66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG66" }, { "id": "PS51388", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51388" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GED", "eco_id": "ECO_0000259", "start_pos": 619, "end_pos": 710, "start_aa": "Ile", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 309, "end_pos": 311 }, { "start_pos": 542, "end_pos": 544 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJB6-1", "uniprot_ac": "F1SJB6", "uniprot_id": "F1SJB6_PIG", "mass": { "chemical_mass": 89802.0, "monoisotopic_mass": 89802.0 }, "refseq": {}, "gene_names": [ { "name": "TMC1", "type": "recommended", "evidence": [ { "id": "F1SJB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" } ] } ], "protein_names": [ { "name": "Transmembrane channel-like protein", "type": "recommended", "evidence": [ { "id": "F1SJB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJB6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJB6", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMC1", "url": "https://www.uniprot.org/uniprotkb/F1SJB6", "locus": { "chromosome": "1", "start_pos": 226109469, "end_pos": 225929109, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005266", "url": "https://www.ensembl.org/id/ENSSSCG00000005266" } ] } } ], "crossref": [ { "id": "F1SJB6", "url": "https://alphafold.ebi.ac.uk/entry/F1SJB6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005266", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005266", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR012496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038900", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038900", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23302", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23302", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23302:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23302:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8D0X552", "url": "https://www.uniprot.org/uniprotkb/A0A8D0X552", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0X552-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0X552-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJB6", "url": "https://www.uniprot.org/uniprotkb/F1SJB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJB6-1", "url": "https://www.uniprot.org/uniprotkb/F1SJB6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPKKVQIQVEEKEDDTEESSSGEEEENKLPRRESLRPKRKRTRDVINEDDPEPEPEDEETRKAREKERRRRLRRGAEEEEEIDEEELERLKAELDEKRQMIATVKCKPWKMEKKIEVLKEAKKFVSENEGALGKGKGKQWFAFKMMMAKKWAKFLRDFENFKAACIPWENKIKAIESQFGSSVASYFLFLRWMYGVNMVLFILTFSLIMLPEYLWGLPYGSLPRKTVPRAEEASAANFGVLYDFNGLAQYSVLFYGYYDNKRTIGWMNFRLPLSYFLVGIMCIGYSFLVVLKAMTKNIGDDGGGDDNTFNFSWKVFTSWDYLIGNPETADNKFNSITMNFKEAIIEERAAQVEENVHLIRFLRFLANFFVFLTLGGSGYLIFWAVKRSQEFAQQDPDTLGWWEKNEMNMVMSLLGMFCPTLFDLFAELEDYHPLIALKWLLGRIFALLLGNLYVFILALMDEINNKIEEEKLVKANITLWEANMIKAYNASLTGNSTGPPFFVHPADVPRGPCWETMVGQEFVRLTVSDVLTTYVTILIGDFLRACFVRFCNYCWCWDLEYGYPSYTEFDISGNVLALIFNQGMIWMGSFFAPSLPGINILRLHTSMYFQCWAVMCCNVPEARVFKASRSNNFYLGMLLLILFLSTMPVLYMIVSLPPSFDCGPFSGKNRMFEVIGETLEHDFPSWMAKILRQLSNPGLVIAVVLVMALTIYYLNATAKGQKAANLDLKKKMKQLQLLAASNSHRYPGGPEVLLIVLFETSNLCEGPENKCGVAISLFT", "length": 780, "header": "tr|F1SJB6-1|F1SJB6_PIG Isoform 1 of Transmembrane channel-like protein OS=Sus scrofa OX=9823 GN=TMC1 PE=3 SV=4 CANONICAL=F1SJB6-1" }, "isoforms": [ { "isoform_ac": "A0A8D0X552-1", "url": "https://www.uniprot.org/uniprotkb/F1SJB6/entry#A0A8D0X552-1", "sequence": { "sequence": "MPPKKGGEEEENKLPRRESLRPKRKRTRDVINEDDPEPEPEDEETRKAREKERRRRLRRGAEEEEIDEEELERLKAELDEKRQMIATVKCKPWKMEKKIEVLKEAKKFVSENEGALGKGKGKQWFAFKMMMAKKWAKFLRDFENFKAACIPWENKIKAIESQFGSSVASYFLFLRWMYGVNMVLFILTFSLIMLPEYLWGLPYGSLPRKTVPRAEEASAANFGVLYDFNGLAQYSVLFYGYYDNKRTIGWMNFRLPLSYFLVGIMCIGYSFLVVLKAMTKNIGDDGGGDDNTFNFSWKVFTSWDYLIGNPETADNKFNSITMNFKEAIIEERAAQVEENVHLIRFLRFLANFFVFLTLGGSGYLIFWAVKRSQEFAQQDPDTLGWWEKNEMNMVMSLLGMFCPTLFDLFAELEDYHPLIALKWLLGRIFALLLGNLYVFILALMDEINNKIEEEKLVKANITLWEANMIKAYNASLTGNSTGPPFFVHPADVPRGPCWETMVGQEFVRLTVSDVLTTYVTILIGDFLRACFVRFCNYCWCWDLEYGYPSYTEFDISGNVLALIFNQGMIWMGSFFAPSLPGINILRLHTSMYFQCWAVMCCNVPEARVFKASRSNNFYLGMLLLILFLSTMPVLYMIVSLPPSFDCGPFSGKNRMFEVIGETLEHDFPSWMAKILRQLSNPGLVIAVVLVMALTIYYLNATAKGQKAANLDLKKKMKQQALENKLRNKKMAAARAAAAAGSQQS", "length": 744, "header": "tr|A0A8D0X552-1|F1SJB6_PIG Computationally mapped isoform of Transmembrane channel-like protein OS=Sus scrofa OX=9823 GN=TMC1 PE=3 SV=1 CANONICAL=F1SJB6-1" }, "locus": { "chromosome": "1", "start_pos": 226109355, "end_pos": 225951795, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099305.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099305.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075958.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075958.1" } ] } }, { "isoform_ac": "F1SJB6-1", "url": "https://www.uniprot.org/uniprotkb/F1SJB6/entry#F1SJB6-1", "sequence": { "sequence": "MPPKKVQIQVEEKEDDTEESSSGEEEENKLPRRESLRPKRKRTRDVINEDDPEPEPEDEETRKAREKERRRRLRRGAEEEEEIDEEELERLKAELDEKRQMIATVKCKPWKMEKKIEVLKEAKKFVSENEGALGKGKGKQWFAFKMMMAKKWAKFLRDFENFKAACIPWENKIKAIESQFGSSVASYFLFLRWMYGVNMVLFILTFSLIMLPEYLWGLPYGSLPRKTVPRAEEASAANFGVLYDFNGLAQYSVLFYGYYDNKRTIGWMNFRLPLSYFLVGIMCIGYSFLVVLKAMTKNIGDDGGGDDNTFNFSWKVFTSWDYLIGNPETADNKFNSITMNFKEAIIEERAAQVEENVHLIRFLRFLANFFVFLTLGGSGYLIFWAVKRSQEFAQQDPDTLGWWEKNEMNMVMSLLGMFCPTLFDLFAELEDYHPLIALKWLLGRIFALLLGNLYVFILALMDEINNKIEEEKLVKANITLWEANMIKAYNASLTGNSTGPPFFVHPADVPRGPCWETMVGQEFVRLTVSDVLTTYVTILIGDFLRACFVRFCNYCWCWDLEYGYPSYTEFDISGNVLALIFNQGMIWMGSFFAPSLPGINILRLHTSMYFQCWAVMCCNVPEARVFKASRSNNFYLGMLLLILFLSTMPVLYMIVSLPPSFDCGPFSGKNRMFEVIGETLEHDFPSWMAKILRQLSNPGLVIAVVLVMALTIYYLNATAKGQKAANLDLKKKMKQLQLLAASNSHRYPGGPEVLLIVLFETSNLCEGPENKCGVAISLFT", "length": 780, "header": "tr|F1SJB6-1|F1SJB6_PIG Isoform 1 of Transmembrane channel-like protein OS=Sus scrofa OX=9823 GN=TMC1 PE=3 SV=4 CANONICAL=F1SJB6-1" }, "locus": { "chromosome": "1", "start_pos": 226109466, "end_pos": 225951795, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005801.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005801.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005657.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005657.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0X552", "url": "https://www.uniprot.org/uniprotkb/A0A8D0X552" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJB6", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SJB6", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" } ], "pmid": "" }, { "name": "stereocilium tip", "id": "GO:0032426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032426", "evidence": [ { "database": "UniProtKB", "id": "F1SJB6", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "vestibular reflex", "id": "GO:0060005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060005", "evidence": [ { "database": "UniProtKB", "id": "F1SJB6", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" } ], "pmid": "" }, { "name": "detection of mechanical stimulus involved in sensory perception of sound", "id": "GO:0050910", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050910", "evidence": [ { "database": "UniProtKB", "id": "F1SJB6", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mechanosensitive monoatomic ion channel activity", "id": "GO:0008381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008381", "evidence": [ { "database": "UniProtKB", "id": "F1SJB6", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" } ], "pmid": "" }, { "name": "voltage-gated calcium channel activity", "id": "GO:0005245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005245", "evidence": [ { "database": "UniProtKB", "id": "F1SJB6", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" }, { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" }, { "start_pos": 496, "end_pos": 498, "annotation": "n_glycosylation_sequon" }, { "start_pos": 716, "end_pos": 718, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJB6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 780, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJB6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJB6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJB6" }, { "id": "PF07810", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07810" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TMC", "eco_id": "ECO_0000259", "start_pos": 514, "end_pos": 629, "start_aa": "Cys", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 311, "end_pos": 313 }, { "start_pos": 477, "end_pos": 479 }, { "start_pos": 490, "end_pos": 492 }, { "start_pos": 496, "end_pos": 498 }, { "start_pos": 716, "end_pos": 718 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFS0-1", "uniprot_ac": "F1SFS0", "uniprot_id": "F1SFS0_PIG", "mass": { "chemical_mass": 29472.0, "monoisotopic_mass": 29472.0 }, "refseq": { "ac": "XP_003358542", "name": "S-adenosylmethionine mitochondrial carrier protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358542" }, "gene_names": [ { "name": "SLC25A26", "type": "recommended", "evidence": [ { "id": "F1SFS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFS0" } ] }, { "name": "SLC25A26", "type": "synonym", "evidence": [ { "id": "XP_003358542", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358542" } ] } ], "protein_names": [ { "name": "Mitochondrial S-adenosylmethionine carrier protein", "type": "recommended", "evidence": [ { "id": "F1SFS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFS0/entry#names_and_taxonomy" } ] }, { "name": "S-adenosylmethionine mitochondrial carrier protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003358542", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358542" } ] }, { "name": "Solute carrier family 25 member 26", "type": "synonym", "evidence": [ { "id": "F1SFS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFS0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Mitochondrial S-adenosyl-L-methionine/S-adenosyl-L-homocysteine antiporter. Mediates the exchange of cytosolic S-adenosyl-L-methionine, the predominant methyl-group donor for macromolecule methylation processes, for mitochondrial S-adenosylhomocysteine(SAH), a by-product of methylation reactions.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1A694", "url": "https://www.uniprot.org/uniprotkb/A0A8D1A694#function" }, { "database": "UniProtKB", "id": "ARBA00037638", "url": "https://www.uniprot.org/uniprotkb/ARBA00037638#function" }, { "database": "UniProtKB", "id": "A0A5G2QGK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK5#function" }, { "database": "UniProtKB", "id": "A0A5G2QM85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM85#function" }, { "database": "UniProtKB", "id": "F1SFS0", "url": "https://www.uniprot.org/uniprotkb/F1SFS0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFS0", "url": "https://www.uniprot.org/uniprotkb/F1SFS0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC25A26", "url": "https://www.uniprot.org/uniprotkb/F1SFS0", "locus": { "chromosome": "13", "start_pos": 47910196, "end_pos": 47743617, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011498", "url": "https://www.ensembl.org/id/ENSSSCG00000011498" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011498", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011498", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624317", "url": "https://www.ncbi.nlm.nih.gov/gene/100624317", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624317", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624317", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IGPRTMW", "url": "https://omabrowser.org/oma/group/IGPRTMW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFS0", "url": "https://www.orthodb.org/?gene=F1SFS0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45667", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45667", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00153", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00153", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-549127", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-549127", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003358542", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358542", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "75479", "url": "https://www.rhea-db.org/rhea/75479", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QGK5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM85-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1A694", "url": "https://www.uniprot.org/uniprotkb/A0A8D1A694", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1A694-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1A694-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFS0", "url": "https://www.uniprot.org/uniprotkb/F1SFS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFS0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFS0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQPGFTASLVAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFRGIYAGVPSTAIGSFPNAAAFFITYEYVKWFLHSDSSSYLMPVKHMLAASAGEVVACLIRVPSEVVKQRAQVSASSGTFRIFSTILYQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTATGNVLSALHGVWRMQGLSGLFAGVLPRMAAISLGGFIFLGAYDRTRSFVLELGRERP", "length": 274, "header": "tr|F1SFS0-1|F1SFS0_PIG Isoform 1 of Mitochondrial S-adenosylmethionine carrier protein OS=Sus scrofa OX=9823 GN=SLC25A26 PE=3 SV=4 CANONICAL=F1SFS0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGK5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFS0/entry#A0A5G2QGK5-1", "sequence": { "sequence": "MLAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFRGIYAGVPSTAIGSFPNAAAFFITYEYVKWFLHSDSSSYLMPVKHMLAASAGEVVACLIRVPSEVVKQRAQVSASSGTFRIFSTILYQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTATGNVLSALHGVWRMQGLSGLFAGVLPRMAAISLGGFIFLGAYDRTRSFVLELGRERP", "length": 265, "header": "tr|A0A5G2QGK5-1|F1SFS0_PIG Computationally mapped isoform of Mitochondrial S-adenosylmethionine carrier protein OS=Sus scrofa OX=9823 GN=SLC25A26 PE=3 SV=2 CANONICAL=F1SFS0-1" }, "locus": { "chromosome": "13", "start_pos": 47907936, "end_pos": 47748763, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073595.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073595.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061131.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061131.2" } ] } }, { "isoform_ac": "A0A5G2QM85-1", "url": "https://www.uniprot.org/uniprotkb/F1SFS0/entry#A0A5G2QM85-1", "sequence": { "sequence": "MDQPGFTASLVAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFRGIYAGVPSTAIGSFPNAAAFFITYEYVKWFLHSDSSSYLMPVKHMLAASAGEVVACLIRVPSEVVKQRAQVSASSGTFRIFSTILYQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTATGNVLSALHGVWRMQGLSGCNLMVTGLVWCMRISL", "length": 252, "header": "tr|A0A5G2QM85-1|F1SFS0_PIG Computationally mapped isoform of Mitochondrial S-adenosylmethionine carrier protein OS=Sus scrofa OX=9823 GN=SLC25A26 PE=3 SV=1 CANONICAL=F1SFS0-1" }, "locus": { "chromosome": "13", "start_pos": 47907226, "end_pos": 47743720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072566.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072566.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063212.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063212.1" } ] } }, { "isoform_ac": "A0A8D1A694-1", "url": "https://www.uniprot.org/uniprotkb/F1SFS0/entry#A0A8D1A694-1", "sequence": { "sequence": "MFMAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFRGIYAGVPSTAIGSFPNAAAFFITYEYVKWFLHSDSSSYLMPVKHMLAASAGEVVACLIRVPSEVVKQRAQVSASSGTFRIFSTILYQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTATGNVLSALHGVWRMQGLSGLFAGVLPRMAAISLGGFIFLGAYDRTRSFVLELGRERP", "length": 266, "header": "tr|A0A8D1A694-1|F1SFS0_PIG Computationally mapped isoform of Mitochondrial S-adenosylmethionine carrier protein OS=Sus scrofa OX=9823 GN=SLC25A26 PE=3 SV=1 CANONICAL=F1SFS0-1" }, "locus": { "chromosome": "13", "start_pos": 47907936, "end_pos": 47758611, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088876.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088876.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067139.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067139.1" } ] } }, { "isoform_ac": "F1SFS0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFS0/entry#F1SFS0-1", "sequence": { "sequence": "MDQPGFTASLVAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFRGIYAGVPSTAIGSFPNAAAFFITYEYVKWFLHSDSSSYLMPVKHMLAASAGEVVACLIRVPSEVVKQRAQVSASSGTFRIFSTILYQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTATGNVLSALHGVWRMQGLSGLFAGVLPRMAAISLGGFIFLGAYDRTRSFVLELGRERP", "length": 274, "header": "tr|F1SFS0-1|F1SFS0_PIG Isoform 1 of Mitochondrial S-adenosylmethionine carrier protein OS=Sus scrofa OX=9823 GN=SLC25A26 PE=3 SV=4 CANONICAL=F1SFS0-1" }, "locus": { "chromosome": "13", "start_pos": 47907936, "end_pos": 47743720, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012582.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012582.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012253.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012253.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1A694", "url": "https://www.uniprot.org/uniprotkb/A0A8D1A694" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624317", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624317", "resource": "KEGG Pathway" }, { "id": "R-SSC-549127", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-549127", "resource": "Reactome", "description": "SLC-mediated transport of organic cations" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LDL0-1", "protein_name": "Mitochondrial S-adenosylmethionine carrier protein", "gene_name": "Slc25a26", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDAPGFTASLVAGGVAGASVDLILFPLDTIKTRLQSPQGFNKAGGFRGIYAGVPSTAIGSFPNAAMFFLTYEYVKYLLHTDSASHFRPVKHMLAASAGEVVACLIRVPSEVVKQRAQVSASSKTLQIFSTILNEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRRGHMVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTAVGSVLSAMHAVWRSQGLAGLFAGVFPRMAAISMGGFIFLGAYDQTRSLLLEVGRKSP", "length": 274 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6AAR8-1", "protein_name": "Mitochondrial S-adenosylmethionine carrier protein", "gene_name": "Slc25a26", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDAPGFTASLVAGGVAGAAVDLILFPLDTIKTRLQSPQGFNQAGGFRGIYAGVPSAAIGSFPNAAAFFLTYEYVKSLLHTDSTSHFRPMKHMLAASTGEVVACLIRVPSEVVKQRAQVSASSKTLQIFSTILSEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRRGRVVESWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTAVGNVLSAMHGVWRSQGLAGLFAGVFPRMAAISMGGFIFLGAYDQTRSLLLEVGRKSP", "length": 274 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Z3J1-1", "protein_name": "Mitochondrial S-adenosylmethionine carrier protein", "gene_name": "SLC25A26", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPRESWAALAAGGIAGVFVDLILFPLDTVKTRLQSPQGFRKAGGFRGIYAGVPSTAIGSFPNAAAFFITYENVKSVLHHDSTSYLTPVTHMVAASLGEVVACLIRVPSEVVKQRAQVSPSAGTFRILSHTLYHEGIQGLYRGYKSTVLREIPFSLVQFPLWEFLKDLWSWKQGHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSTTASGNVLAALGGIWRTQGLSGLQARPLAVPCWTRSAPQEGLSMCSSSRSGSVGLFTAKLAFGCYAEDVDPSLQEMLASQDDADPDQRSQHDATHHSNGDDPHGGTVLSTPKRL", "length": 328 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6QR09-1", "protein_name": "Mitochondrial S-adenosylmethionine carrier protein", "gene_name": "SLC25A26", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDRPGFTASLVAGGVAGVSVDLILFPLDTIKTRLQSPQGFYKAGGFYGVYAGVPSTAIGSFPNAAAFFVTYEYVKWILHTDSSSYLMPVTHMLAASVGEVVACLIRVPSEVVKQRAQVSASSGTFHIFSNILCQEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDRVVDSWQAAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTASGNILSALHAVWRTQGLSGLFAGVFPRMAAISLGGFIFLGVYDQTRSFLLELGRESP", "length": 274 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P38921-1", "protein_name": "Mitochondrial S-adenosylmethionine carrier protein", "gene_name": "PET8", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MNTFFLSLLSGAAAGTSTDLVFFPIDTIKTRLQAKGGFFANGGYKGIYRGLGSAVVASAPGASLFFISYDYMKVKSRPYISKLYSQGSEQLIDTTTHMLSSSIGEICACLVRVPAEVVKQRTQVHSTNSSWQTLQSILRNDNKEGLRKNLYRGWSTTIMREIPFTCIQFPLYEYLKKTWAKANGQSQVEPWKGAICGSIAGGIAAATTTPLDFLKTRLMLNKTTASLGSVIIRIYREEGPAVFFSGVGPRTMWISAGGAIFLGMYETVHSLLSKSFPTAGEMRA", "length": 284 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q4V9P0-1", "protein_name": "Mitochondrial S-adenosylmethionine carrier protein", "gene_name": "slc25a26", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDRREFTASLVAGGCAGMCVDLTLFPLDTIKTRLQSQQGFYKAGGFRGIYAGVPSAAIGSFPNAAAFFVTYESTKSVFSGYTTTNLAPITHMLAASLGEIVACLIRVPTEVVKQRTQANPSISTYRVLLNSLQEEGFRGLYRGYGSTVLREIPFSLVQFPLWEYLKAVWWRRQGGRLDSWQAAVCGALAGGVAAFVTTPLDVAKTWIMLAKAGTSTASGNIPMVLCEVWRSRGIPGLFAGSIPRVMFISMGGFIFLGAYEKVRRTLL", "length": 267 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5U680-1", "protein_name": "Mitochondrial S-adenosylmethionine carrier protein", "gene_name": "Slc25a26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDAPGFTASLVAGGVAGVSVDLILFPLDTIKTRLQSPQGFNKAGGFRGIYAGVPSAAVGSFPNAAAFFLTYEYVKSLLHTDSTSHFKPVKHMLAASTGEVVACLIRVPSEVVKQRAQVSASSKTLQIFLTILSEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWAWRRGHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRIMLAKAGSSTAVGNVLSAMHGVWRSQGLAGLFAGVLPRMAAISMGGFIFLGAYDQARSLLLEVGRKSP", "length": 274 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q70HW3-1", "protein_name": "Mitochondrial S-adenosylmethionine carrier protein", "gene_name": "SLC25A26", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDRPGFVAALVAGGVAGVSVDLILFPLDTIKTRLQSPQGFSKAGGFHGIYAGVPSAAIGSFPNAAAFFITYEYVKWFLHADSSSYLTPMKHMLAASAGEVVACLIRVPSEVVKQRAQVSASTRTFQIFSNILYEEGIQGLYRGYKSTVLREIPFSLVQFPLWESLKALWSWRQDHVVDSWQSAVCGAFAGGFAAAVTTPLDVAKTRITLAKAGSSTADGNVLSVLHGVWRSQGLAGLFAGVFPRMAAISLGGFIFLGAYDRTHSLLLEVGRKSP", "length": 274 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q94AG6-1", "protein_name": "S-adenosylmethionine carrier 1, chloroplastic/mitochondrial", "gene_name": "SAMC1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAPLTLSVDVKSSSATSHDVSKRVMQSSQLKINKGFFASVNTQEDKPFDFFRTLFEGFIAGGTAGVVVETALYPIDTIKTRLQAARGGGKIVLKGLYSGLAGNIAGVLPASALFVGVYEPTKQKLLKTFPDHLSAVAHLTAGAIGGLAASLIRVPTEVVKQRMQTGQFTSAPSAVRMIASKEGFRGLYAGYRSFLLRDLPFDAIQFCIYEQLCLGYKKAARRELSDPENALIGAFAGALTGAVTTPLDVIKTRLMVQGSAKQYQGIVDCVQTIVREEGAPALLKGIGPRVLWIGIGGSIFFGVLESTKRTLAQRRPNTVKETKEE", "length": 325 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VBN7-2", "protein_name": "S-adenosylmethionine mitochondrial carrier protein homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAAELGLESAAGSVAIKMQEPVNKLKFFHALVAGGVAGMVVDIALFPIDTVKTRLQSELGFWRAGGFRGIYKGLAPAAAGSAPTAALFFCTYECGKQFLSSVTQTKDSPYVHMAAASAAEVLACLIRVPVEIAKQRSQTLQGNKQSGLQILLRAYRTEGLKRGLYRGFGSTIMREIPFSLIQFPLWEYFKLQWTPLTGFDSTPFSVALCGAVAGGISAGLTTPLDVVKTRIMLAERESLNRRRSARRILHGIYLERGFSGLFAGFVPRVLWITLGGAFFFGFYDLTTRILGATSTDH", "length": 297 }, "evidence": [ { "id": "F1SFS0", "url": "https://omabrowser.org/oma/group/F1SFS0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SFS0", "url": "https://www.uniprot.org/uniprotkb/F1SFS0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "F1SFS0", "url": "https://www.uniprot.org/uniprotkb/F1SFS0" } ], "pmid": "" }, { "name": "mitochondrial S-adenosyl-L-methionine transmembrane transport", "id": "GO:1990543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990543", "evidence": [ { "database": "UniProtKB", "id": "F1SFS0", "url": "https://www.uniprot.org/uniprotkb/F1SFS0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "S-adenosyl-L-methionine transmembrane transporter activity", "id": "GO:0000095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000095", "evidence": [ { "database": "UniProtKB", "id": "F1SFS0", "url": "https://www.uniprot.org/uniprotkb/F1SFS0" } ], "pmid": "" }, { "name": "S-adenosyl-L-methionine:S-adenosyl-L-homocysteine antiporter activity", "id": "GO:0180003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0180003", "evidence": [ { "database": "UniProtKB", "id": "F1SFS0", "url": "https://www.uniprot.org/uniprotkb/F1SFS0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "75479", "name": "", "equation": "S-adenosyl-L-homocysteine(out) + S-adenosyl-L-methionine(in) = S-adenosyl-L-homocysteine(in) + S-adenosyl-L-methionine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "75479", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/75479" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKE2-1", "uniprot_ac": "F1SKE2", "uniprot_id": "F1SKE2_PIG", "mass": { "chemical_mass": 87562.0, "monoisotopic_mass": 87562.0 }, "refseq": { "ac": "XP_020925245", "name": "procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925245" }, "gene_names": [ { "name": "PLOD2", "type": "recommended", "evidence": [ { "id": "F1SKE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ] }, { "name": "PLOD2", "type": "synonym", "evidence": [ { "id": "XP_020925245", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925245" } ] } ], "protein_names": [ { "name": "Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2", "type": "recommended", "evidence": [ { "id": "F1SKE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE2/entry#names_and_taxonomy" } ] }, { "name": "1.14.11.4", "type": "synonym", "evidence": [ { "id": "F1SKE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE2/entry#names_and_taxonomy" } ] }, { "name": "Lysyl hydroxylase 2", "type": "synonym", "evidence": [ { "id": "F1SKE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE2/entry#names_and_taxonomy" } ] }, { "name": "procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020925245", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925245" } ] } ], "function": [ { "annotation": "Forms hydroxylysine residues in -Xaa-Lys-Gly- sequences in collagens. These hydroxylysines serve as sites of attachment for carbohydrate units and are essential for the stability of the intermolecular collagen cross-links.", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2#function" }, { "database": "UniProtKB", "id": "ARBA00057201", "url": "https://www.uniprot.org/uniprotkb/ARBA00057201#function" }, { "database": "UniProtKB", "id": "A0A287BJL8", "url": "https://www.uniprot.org/uniprotkb/A0A287BJL8#function" }, { "database": "UniProtKB", "id": "A0A4X1T494", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T494#function" }, { "database": "UniProtKB", "id": "A0A8D1JHC2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JHC2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLOD2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2", "locus": { "chromosome": "13", "start_pos": 86401244, "end_pos": 86513105, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011689", "url": "https://www.ensembl.org/id/ENSSSCG00000011689" } ] } } ], "crossref": [ { "id": "F1SKE2", "url": "https://alphafold.ebi.ac.uk/entry/F1SKE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011689", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011689", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23003", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23003", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "641354", "url": "https://www.ncbi.nlm.nih.gov/gene/641354", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:641354", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:641354", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SKE2", "url": "https://www.orthodb.org/?gene=F1SKE2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10730", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10730", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10730:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10730:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25342", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25342", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020925245", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925245", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16569", "url": "https://www.rhea-db.org/rhea/16569", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BJL8", "url": "https://www.uniprot.org/uniprotkb/A0A287BJL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T494", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T494", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T494-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T494-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JHC2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JHC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JHC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JHC2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKE2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWCTIRPQQLLLLVVLVLQPWNSCLGADSEKPSIIPTDKLLVITVATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINTIGGGQKVRLMKEVMENYANQEDLIILFTECFDVIFAGGPEEVLKKFQKSNHKVVFSADGILWPDKRLADKYPIVHIGKRYLNSGGFIGYAPYINRIVQQWNLQDNDDDQLFYTKIYIDPLKREALNITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNVFYETLPVAINGNGPTKILLNYFGNYVPNAWTQDNGCTLCDVDTIDLSAVDVHPNVTIGVFIEQPTPFLPRFLDTLLTLDYPKEALKLFIHNKEVYHEKNIKVFFDKAKHEITTIKIVGPEENLSQAEARNMGMDFCRQDENCNYYFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQGNRVGIWNVPYMANVYLIKGKTLRSEMNERNYFVRDKLDPDMALCRNAREMTLQREKDSPTPETFQMLSPPKGVFMYVSNRHEFGRLLSTANYNISHYHNDLWQIFENPVDWKEKYINRDYSKIFTENIVEQPCPDVFWFPIFSEKACDELVEEMEHYGQWSGGKHHDSRISGGYENVPTDDIHMKQIDLENVWLHFIREFIAPVTLKVFAGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIALNNVGEDFQGGGCKFLRYNCSIESPRKGWSFMHPGRLTHLHEGLPVKNGTRYIAVSFIDP", "length": 760, "header": "tr|F1SKE2-1|F1SKE2_PIG Isoform 1 of Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Sus scrofa OX=9823 GN=PLOD2 PE=1 SV=4 CANONICAL=F1SKE2-1" }, "isoforms": [ { "isoform_ac": "A0A287BJL8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKE2/entry#A0A287BJL8-1", "sequence": { "sequence": "MGWCTIRPQQLLLLVVLVLQPWNSCLGADSEKPSIIPTDKLLVITVATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINTIGGGQKVRLMKEVMENYANQEDLIILFTECFDVIFAGGPEEVLKKFQKSNHKVVFSADGILWPDKRLADKYPIVHIGKRYLNSGGFIGYAPYINRIVQQWNLQDNDDDQLFYTKIYIDPLKREALNITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNVFYETLPVAINGNGPTKILLNYFGNYVPNAWTQDNGCTLCDVDTIDLSAVDVHPNVTIGVFIEQPTPFLPRFLDTLLTLDYPKEALKLFIHNKEVYHEKNIKVFFDKAKHEITTIKIVGPEENLSQAEARNMGMDFCRQDENCNYYFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQGNRVGIWNVPYMANVYLIKGKTLRSEMNERNYFVRDKLDPDMALCRNAREMGVFMYVSNRHEFGRLLSTANYNISHYHNDLWQIFENPVDWKEKYINRDYSKIFTENIVEQPCPDVFWFPIFSEKACDELVEEMEHYGQWSGGKHHDSRISGGYENVPTDDIHMKQIDLENVWLHFIREFIAPVTLKVFAGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIALNNVGEDFQGGGCKFLRYNCSIESPRKGWSFMHPGRLTHLHEGLPVKNGTRYIAVSFIDP", "length": 739, "header": "tr|A0A287BJL8-1|F1SKE2_PIG Computationally mapped isoform of Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Sus scrofa OX=9823 GN=PLOD2 PE=1 SV=1 CANONICAL=F1SKE2-1" }, "locus": { "chromosome": "13", "start_pos": 86512633, "end_pos": 86403951, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066221.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066221.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056803.1", "url": "https://www.ensembl.org/id/ENSSSCP00000056803.1" } ] } }, { "isoform_ac": "A0A4X1T494-1", "url": "https://www.uniprot.org/uniprotkb/F1SKE2/entry#A0A4X1T494-1", "sequence": { "sequence": "MQSAKYFNYTVKVLGQGEEWRGGDGINTIGGGQKVRLMKEVMENYANQEDLIILFTECFDVIFAGGPEEVLKKFQKSNHKVVFSADGILWPDKRLADKYPIVHIGKRYLNSGGFIGYAPYINRIVQQWNLQDNDDDQLFYTKIYIDPLKREALNITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNVFYETLPVAINGNGPTKILLNYFGNYVPNAWTQDNGCTLCDVDTIDLSAVDVHPNVTIGVFIEQPTPFLPRFLDTLLTLDYPKEALKLFIHNKEVYHEKNIKVFFDKAKHEITTIKIVGPEENLSQAEARNMGMDFCRQDENCNYYFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQGNRVGIWNVPYMANVYLIKGKTLRSEMNERNYFVRDKLDPDMALCRNAREMTLQREKDSPTPETFQMLSPPKGVFMYVSNRHEFGRLLSTANYNISHYHNDLWQIFENPVDWKEKYINRDYSKIFTENIVEQPCPDVFWFPIFSEKACDELVEEMEHYGQWSGGKHHDSRISGGYENVPTDDIHMKQIDLENVWLHFIREFIAPVTLKVFAGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIALNNVGEDFQGGGCKFLRYNCSIESPRKGWSFMHPGRLTHLHEGLPVKNGTRYIAVSFIDP", "length": 703, "header": "tr|A0A4X1T494-1|F1SKE2_PIG Computationally mapped isoform of Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Sus scrofa OX=9823 GN=PLOD2 PE=1 SV=1 CANONICAL=F1SKE2-1" }, "locus": { "chromosome": "13", "start_pos": 86474263, "end_pos": 86403951, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063335.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063335.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044984.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044984.1" } ] } }, { "isoform_ac": "A0A8D1JHC2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKE2/entry#A0A8D1JHC2-1", "sequence": { "sequence": "FLLCLFFNFILPLFPKSLREEWRGGDGINTIGGGQKVRLMKEVMENYANQEDLIILFTECFDVIFAGGPEEVLKKFQKSNHKVVFSADGILWPDKRLADKYPIVHIGKRYLNSGGFIGYAPYINRIVQQWNLQDNDDDQLFYTKIYIDPLKREALNITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNVFYETLPVAINGNGPTKILLNYFGNYVPNAWTQDNGCTLCDVDTIDLSAVDVHPNVTIGVFIEQPTPFLPRFLDTLLTLDYPKEALKLFIHNKEVYHEKNIKVFFDKAKHEITTIKIVGPEENLSQAEARNMGMDFCRQDENCNYYFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQGNRVGIWNVPYMANVYLIKGKTLRSEMNERNYFVRDKLDPDMALCRNAREMTLQREKDSPTPETFQMLSPPKGVFMYVSNRHEFGRLLSTANYNISHYHNDLWQIFENPVDWKEKYINRDYSKIFTENIVEQPCPDVFWFPIFSEKACDELVEEMEHYGQWSGGKHHDSRISGGYENVPTDDIHMKQIDLENVWLHFIREFIAPVTLKVFAGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIALNNVGEDFQGGGCKFLRYNCSIESPRKGWSFMHPGRLTHLHEGLPVKNGTRYIAVSFIDP", "length": 705, "header": "tr|A0A8D1JHC2-1|F1SKE2_PIG Computationally mapped isoform of Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Sus scrofa OX=9823 GN=PLOD2 PE=1 SV=1 CANONICAL=F1SKE2-1" }, "locus": { "chromosome": "13", "start_pos": 86472117, "end_pos": 86403951, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045532.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045532.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039061.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039061.2" } ] } }, { "isoform_ac": "F1SKE2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKE2/entry#F1SKE2-1", "sequence": { "sequence": "MGWCTIRPQQLLLLVVLVLQPWNSCLGADSEKPSIIPTDKLLVITVATKESDGFHRFMQSAKYFNYTVKVLGQGEEWRGGDGINTIGGGQKVRLMKEVMENYANQEDLIILFTECFDVIFAGGPEEVLKKFQKSNHKVVFSADGILWPDKRLADKYPIVHIGKRYLNSGGFIGYAPYINRIVQQWNLQDNDDDQLFYTKIYIDPLKREALNITLDHKCKIFQTLNGAVDEVVLKFENGKARAKNVFYETLPVAINGNGPTKILLNYFGNYVPNAWTQDNGCTLCDVDTIDLSAVDVHPNVTIGVFIEQPTPFLPRFLDTLLTLDYPKEALKLFIHNKEVYHEKNIKVFFDKAKHEITTIKIVGPEENLSQAEARNMGMDFCRQDENCNYYFSVDADVVLTNPRTLKILIEQNRKIIAPLVTRHGKLWSNFWGALSPDGYYARSEDYVDIVQGNRVGIWNVPYMANVYLIKGKTLRSEMNERNYFVRDKLDPDMALCRNAREMTLQREKDSPTPETFQMLSPPKGVFMYVSNRHEFGRLLSTANYNISHYHNDLWQIFENPVDWKEKYINRDYSKIFTENIVEQPCPDVFWFPIFSEKACDELVEEMEHYGQWSGGKHHDSRISGGYENVPTDDIHMKQIDLENVWLHFIREFIAPVTLKVFAGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIALNNVGEDFQGGGCKFLRYNCSIESPRKGWSFMHPGRLTHLHEGLPVKNGTRYIAVSFIDP", "length": 760, "header": "tr|F1SKE2-1|F1SKE2_PIG Isoform 1 of Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 OS=Sus scrofa OX=9823 GN=PLOD2 PE=1 SV=4 CANONICAL=F1SKE2-1" }, "locus": { "chromosome": "13", "start_pos": 86512633, "end_pos": 86403951, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012797.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012797.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012459.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012459.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1JHC2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JHC2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:641354", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:641354", "resource": "KEGG Pathway" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" }, { "name": "L-ascorbic acid binding", "id": "GO:0031418", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031418", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" }, { "name": "procollagen-lysine 5-dioxygenase activity", "id": "GO:0008475", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008475", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "rough endoplasmic reticulum membrane", "id": "GO:0030867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030867", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "response to hypoxia", "id": "GO:0001666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001666", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" }, { "name": "collagen fibril organization", "id": "GO:0030199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030199", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" }, { "name": "collagen biosynthetic process", "id": "GO:0032964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032964", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" }, { "name": "hydroxylysine biosynthetic process", "id": "GO:0046947", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046947", "evidence": [ { "database": "UniProtKB", "id": "F1SKE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 367, "end_pos": 369, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" }, { "start_pos": 719, "end_pos": 721, "annotation": "n_glycosylation_sequon" }, { "start_pos": 748, "end_pos": 750, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16569", "name": "", "equation": "L-lysyl-[collagen] + 2-oxoglutarate + O2 = (5R)-5-hydroxy-L-lysyl-[collagen] + succinate + CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16569", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16569" } ] }, { "id": "R-SSC-1981104", "name": "Procollagen lysyl hydroxylases convert collagen lysines to 5-hydroxylysines", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-1650779" ], "output_participant_list": [ "R-ALL-1650769" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1981104", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1981104" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1650769", "participant_name": "SUCCA [endoplasmic reticulum lumen]", "crossref": [ { "id": "30031", "database": "ChEBI", "url": "" }, { "id": "C00042", "database": "COMPOUND", "url": "" }, { "id": "ZINC000000895030", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-1650779", "participant_name": "2OG [endoplasmic reticulum lumen]", "crossref": [ { "id": "16810", "database": "ChEBI", "url": "" }, { "id": "2-KETOGLUTARATE", "database": "AraCyc", "url": "" }, { "id": "C00026", "database": "KEGG Gene", "url": "" }, { "id": "164533", "database": "PubChem Compound", "url": "" }, { "id": "C00000769", "database": "KNApSAcK", "url": "" }, { "id": "328-50-7", "database": "CAS", "url": "" }, { "id": "ZINC000001532519", "database": "ZINC", "url": "" }, { "id": "C00026", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKE2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 760, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKE2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKE2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE2" }, { "id": "PS51471", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51471" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fe2OG dioxygenase", "eco_id": "ECO_0000259", "start_pos": 667, "end_pos": 760, "start_aa": "Lys", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 211, "end_pos": 213 }, { "start_pos": 299, "end_pos": 301 }, { "start_pos": 367, "end_pos": 369 }, { "start_pos": 545, "end_pos": 547 }, { "start_pos": 65, "end_pos": 67 }, { "start_pos": 719, "end_pos": 721 }, { "start_pos": 748, "end_pos": 750 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJJ5-1", "uniprot_ac": "F1SJJ5", "uniprot_id": "F1SJJ5_PIG", "mass": { "chemical_mass": 48032.0, "monoisotopic_mass": 48032.0 }, "refseq": { "ac": "XP_005659919", "name": "large ribosomal subunit protein uL4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659919" }, "gene_names": [ { "name": "RPL4", "type": "recommended", "evidence": [ { "id": "F1SJJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ] }, { "name": "RPL1", "type": "synonym", "evidence": [ { "id": "XP_005659919", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659919" } ] }, { "name": "RPL4", "type": "synonym", "evidence": [ { "id": "XP_005659919", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659919" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein uL4", "type": "recommended", "evidence": [ { "id": "F1SJJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L1", "type": "synonym", "evidence": [ { "id": "XP_005659919", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659919" } ] }, { "name": "60S ribosomal protein L4", "type": "synonym", "evidence": [ { "id": "XP_005659919", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659919" }, { "id": "F1SJJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5/entry#names_and_taxonomy" } ] }, { "name": "large ribosomal subunit protein uL4", "type": "synonym", "evidence": [ { "id": "XP_005659919", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659919" } ] } ], "function": [ { "annotation": "Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R2A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2A7#function" }, { "database": "UniProtKB", "id": "ARBA00034092", "url": "https://www.uniprot.org/uniprotkb/ARBA00034092#function" }, { "database": "UniProtKB", "id": "A0A8D1S998", "url": "https://www.uniprot.org/uniprotkb/A0A8D1S998#function" }, { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPL4", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5", "locus": { "chromosome": "1", "start_pos": 164475357, "end_pos": 164481534, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004945", "url": "https://www.ensembl.org/id/ENSSSCG00000004945" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004945", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004945", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100038029", "url": "https://www.ncbi.nlm.nih.gov/gene/100038029", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "3J7Q", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7Q&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "3J7R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR002136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045240", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045240", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100038029", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100038029", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJJ5", "url": "https://www.orthodb.org/?gene=F1SJJ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19431", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19431", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00003j7q", "url": "https://www.rcsb.org/structure/pdb_00003j7q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00003j7r", "url": "https://www.rcsb.org/structure/pdb_00003j7r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7Q", "url": "https://www.rcsb.org/structure/3J7Q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7R", "url": "https://www.rcsb.org/structure/3J7R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF00573", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00573", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14374", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14374", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005659919", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659919", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A9X4", "url": "https://www.uniprot.org/uniprotkb/A0A287A9X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9X4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2A7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2A7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2A7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2A7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1S998", "url": "https://www.uniprot.org/uniprotkb/A0A8D1S998", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1S998-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1S998-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKAKSGEKGVPDKKPVVEKKGKKAIGKKAVGVKKQKKPLVGKKAVVTKKPAAEKKPAEKKPTTEEKKAVA", "length": 427, "header": "tr|F1SJJ5-1|F1SJJ5_PIG Isoform 1 of Large ribosomal subunit protein uL4 OS=Sus scrofa OX=9823 GN=RPL4 PE=1 SV=3 CANONICAL=F1SJJ5-1" }, "isoforms": [ { "isoform_ac": "A0A287A9X4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5/entry#A0A287A9X4-1", "sequence": { "sequence": "MCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKAKSGEKGVPDKKPVVEKKGKKAIGKKAVGVKKQKKPLVGKKAVVTKKPAAEKKPAEKKPTTEEKKAVA", "length": 333, "header": "tr|A0A287A9X4-1|F1SJJ5_PIG Computationally mapped isoform of Large ribosomal subunit protein uL4 OS=Sus scrofa OX=9823 GN=RPL4 PE=1 SV=2 CANONICAL=F1SJJ5-1" }, "locus": { "chromosome": "1", "start_pos": 164478727, "end_pos": 164476361, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061949.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061949.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040739.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040739.2" } ] } }, { "isoform_ac": "A0A5G2R2A7-1", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5/entry#A0A5G2R2A7-1", "sequence": { "sequence": "MLLLTCEKSASVACQYKYFPFSQACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKAKSGEKGVPDKKPVVEKKGKKPAEKKPTTEEKKAVA", "length": 417, "header": "tr|A0A5G2R2A7-1|F1SJJ5_PIG Computationally mapped isoform of Large ribosomal subunit protein uL4 OS=Sus scrofa OX=9823 GN=RPL4 PE=1 SV=1 CANONICAL=F1SJJ5-1" }, "locus": { "chromosome": "1", "start_pos": 164479830, "end_pos": 164476361, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074072.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074072.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070481.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070481.1" } ] } }, { "isoform_ac": "A0A8D1S998-1", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5/entry#A0A8D1S998-1", "sequence": { "sequence": "MLLLTCEKSASVACQYKYFPFSQACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKAKSGEKGVPDKKPVVEKKGKKAIGKKAVGVKKQKKPLVGKKAVVTKKPAAEKKPAEKKPTTEEKKAVA", "length": 449, "header": "tr|A0A8D1S998-1|F1SJJ5_PIG Computationally mapped isoform of Large ribosomal subunit protein uL4 OS=Sus scrofa OX=9823 GN=RPL4 PE=1 SV=1 CANONICAL=F1SJJ5-1" }, "locus": { "chromosome": "1", "start_pos": 164479830, "end_pos": 164476361, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087662.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087662.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065309.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065309.2" } ] } }, { "isoform_ac": "F1SJJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5/entry#F1SJJ5-1", "sequence": { "sequence": "MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQKRYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVESYKKTKEAVLLLKKLKAWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCIIYNEDNGIIKAFRNIPGITLLNVSKLNILKLAPGGHVGRFCIWTESAFRKLDELYGTWRKAATLKSNYNLPMHKMLNTDLSRILKSPEIQRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKIRMDKAAAALKAKSGEKGVPDKKPVVEKKGKKAIGKKAVGVKKQKKPLVGKKAVVTKKPAAEKKPAEKKPTTEEKKAVA", "length": 427, "header": "tr|F1SJJ5-1|F1SJJ5_PIG Isoform 1 of Large ribosomal subunit protein uL4 OS=Sus scrofa OX=9823 GN=RPL4 PE=1 SV=3 CANONICAL=F1SJJ5-1" }, "locus": { "chromosome": "1", "start_pos": 164481478, "end_pos": 164476361, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056491.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056491.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042118.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042118.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structure of the mammalian ribosome-Sec61 complex to 3.4 A resolution.", "journal": "Cell", "date": "2014", "authors": "Voorhees Rebecca M, Fern\u00e1ndez Israel S, Scheres Sjors H W, Hegde Ramanujan S", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "reference": [ { "type": "PubMed", "id": "24930395", "url": "https://glygen.org/publication/PubMed/24930395" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100038029", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100038029", "resource": "KEGG Pathway" }, { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "pmid": "" }, { "name": "rough endoplasmic reticulum", "id": "GO:0005791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005791", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "pmid": "" }, { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "pmid": "" }, { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "pmid": "" }, { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ5", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" }, { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ5" }, { "id": "PF14374", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14374" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein uL4 C-terminal", "eco_id": "ECO_0000259", "start_pos": 275, "end_pos": 348, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 116, "end_pos": 118 }, { "start_pos": 21, "end_pos": 23 }, { "start_pos": 231, "end_pos": 233 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMF8-1", "uniprot_ac": "F1SMF8", "uniprot_id": "F1SMF8_PIG", "mass": { "chemical_mass": 100251.0, "monoisotopic_mass": 100251.0 }, "refseq": { "ac": "XP_003133980", "name": "poly [ADP-ribose] polymerase 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133980" }, "gene_names": [ { "name": "PARP8", "type": "recommended", "evidence": [ { "id": "F1SMF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ] }, { "name": "PARP8", "type": "synonym", "evidence": [ { "id": "XP_003133980", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133980" } ] } ], "protein_names": [ { "name": "Poly [ADP-ribose] polymerase", "type": "recommended", "evidence": [ { "id": "F1SMF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMF8/entry#names_and_taxonomy" } ] }, { "name": "2.4.2.-", "type": "synonym", "evidence": [ { "id": "F1SMF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMF8/entry#names_and_taxonomy" } ] }, { "name": "PARP", "type": "synonym", "evidence": [ { "id": "F1SMF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMF8/entry#names_and_taxonomy" } ] }, { "name": "poly [ADP-ribose] polymerase 8 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003133980", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133980" } ] } ], "function": [ { "annotation": "Mono-ADP-ribosyltransferase that mediates mono-ADP-ribosylation of target proteins.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1V429", "url": "https://www.uniprot.org/uniprotkb/A0A8D1V429#function" }, { "database": "UniProtKB", "id": "ARBA00055359", "url": "https://www.uniprot.org/uniprotkb/ARBA00055359#function" }, { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PARP8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8", "locus": { "chromosome": "16", "start_pos": 30486414, "end_pos": 30305738, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016882", "url": "https://www.ensembl.org/id/ENSSSCG00000016882" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016882", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016882", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01341", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01341", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511108", "url": "https://www.ncbi.nlm.nih.gov/gene/100511108", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012317", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012317", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051838", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051838", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511108", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511108", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SMF8", "url": "https://www.orthodb.org/?gene=F1SMF8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21328", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21328", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003133980", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133980", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AZW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AZW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AZW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AZW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1V429", "url": "https://www.uniprot.org/uniprotkb/A0A8D1V429", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1V429-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1V429-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMF8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSRPPPPPPPPPPPPPPPPLSPRITSETTSPSAPASARGIYLMGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDYPDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNSTVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDDVDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSHKLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEELYGLKNHKLLSKSYSSTPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQPAPNGAKCIPIRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQTLGVMNEAADEIATGAQVVDLLVSMCRSALESPRKVVIFEPYPSVVDPNDPQMLAFNPRKKNYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQLKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRLQLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKNSNASQSQKKGQQSQFLQSRNLKCIALCEVITSPDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDTNINTQEGGIHKEILRVIGNQTATG", "length": 897, "header": "tr|F1SMF8-1|F1SMF8_PIG Isoform 1 of Poly [ADP-ribose] polymerase OS=Sus scrofa OX=9823 GN=PARP8 PE=3 SV=4 CANONICAL=F1SMF8-1" }, "isoforms": [ { "isoform_ac": "A0A287AZW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SMF8/entry#A0A287AZW7-1", "sequence": { "sequence": "MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDYPDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNSTVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDDVDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSHKLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEELYGLKNHKLLSKSYSSTPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQPAPNGAKCIPIRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQTLGVMNEAADEIATGAQKKNYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQLKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRLQLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKNSNASQKTKKRTAVAVPAKP", "length": 741, "header": "tr|A0A287AZW7-1|F1SMF8_PIG Computationally mapped isoform of Poly [ADP-ribose] polymerase OS=Sus scrofa OX=9823 GN=PARP8 PE=3 SV=3 CANONICAL=F1SMF8-1" }, "locus": { "chromosome": "16", "start_pos": 30469891, "end_pos": 30306177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061136.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061136.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049443.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049443.3" } ] } }, { "isoform_ac": "A0A8D1V429-1", "url": "https://www.uniprot.org/uniprotkb/F1SMF8/entry#A0A8D1V429-1", "sequence": { "sequence": "MGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDYPDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNSTVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDDVDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSHKLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEELYGLKNHKLLSKSYSSTPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQPAPNGAKCIPIRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQTLGVMNEAADEIATGAQKKNYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQLKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRLQLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKNSNASQSQKKGQQSQFLQSRNLKCIALCEVITSPDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDTNINTQEGGIHKEILRVIGNQTATG", "length": 812, "header": "tr|A0A8D1V429-1|F1SMF8_PIG Computationally mapped isoform of Poly [ADP-ribose] polymerase OS=Sus scrofa OX=9823 GN=PARP8 PE=3 SV=1 CANONICAL=F1SMF8-1" }, "locus": { "chromosome": "16", "start_pos": 30481928, "end_pos": 30306177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072732.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072732.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062651.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062651.1" } ] } }, { "isoform_ac": "F1SMF8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMF8/entry#F1SMF8-1", "sequence": { "sequence": "MQSRPPPPPPPPPPPPPPPPLSPRITSETTSPSAPASARGIYLMGMCSRQERIQKDIDVVIQKSRAEKDCLFADFRYSDSTFTFTYIGGPKSVSYSVHVSEDYPDNTYVSSSENDEDVLVTTEPIPIIFHRIATELRKTNDINCCLSIKSKLQKENGEESRQNSTVEEDSEGDNDSEEFYYGGQVNYDGELHKHPQLEADLSAVREIYGPHAVSLREYGAIDDVDIDLHIDVSFLDEEIAVAWEVIRTEPIIVRLHCSLTQYLNGPVPTVDVFQISTKERFGLGHQLKKIMQTFVTQQWKQSKEKSSCLHNKKLSEKKVKSPLHLFSTLRRSPSYPPPGCGKSKSKLKSEQDGISKTHKLLRRTCSSTVKTDDVCASKSHRTFGRSLSSDPRAEQAVTTIKSHKLLNRPCPATVKQEDCLTLKSHKLLTRSCSGDPRCEHNASLKPHKLLSRSYSSNLRMEELYGLKNHKLLSKSYSSTPKSSKTELFKEPNAEGRRLSLTSGLIGILTPSSSSSSQPAPNGAKCIPIRDRGFLVQTIEFAEQRIPVLNEYCVVCDEPHVFQNGPMLRPTVCERELCVFAFQTLGVMNEAADEIATGAQVVDLLVSMCRSALESPRKVVIFEPYPSVVDPNDPQMLAFNPRKKNYDRVMKALDSITSIREMTQAPYLEIKKQMDKQDPLAHPLLQWVISSNRSHIVKLPVNRQLKFMHTPHQFLLLSSPPAKESNFRAAKKLFGSTFAFHGSHIENWHSILRNGLVVASNTRLQLHGAMYGSGIYLSPMSSISFGYSGMNKKQKVSAKDEPASSSKNSNASQSQKKGQQSQFLQSRNLKCIALCEVITSPDLHKHGEIWVVPNTDHVCTRFFFVYEDGQVGDTNINTQEGGIHKEILRVIGNQTATG", "length": 897, "header": "tr|F1SMF8-1|F1SMF8_PIG Isoform 1 of Poly [ADP-ribose] polymerase OS=Sus scrofa OX=9823 GN=PARP8 PE=3 SV=4 CANONICAL=F1SMF8-1" }, "locus": { "chromosome": "16", "start_pos": 30481928, "end_pos": 30305961, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018386.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018386.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017890.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017890.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1V429", "url": "https://www.uniprot.org/uniprotkb/A0A8D1V429" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511108", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511108", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" }, { "name": "NAD+ poly-ADP-ribosyltransferase activity", "id": "GO:0003950", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003950", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" }, { "name": "NAD+-protein mono-ADP-ribosyltransferase activity", "id": "GO:1990404", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990404", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" }, { "name": "kinase binding", "id": "GO:0019900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019900", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein auto-ADP-ribosylation", "id": "GO:0070213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070213", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" }, { "name": "endoplasmic reticulum unfolded protein response", "id": "GO:0030968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030968", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" }, { "name": "endoplasmic reticulum tubular network", "id": "GO:0071782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071782", "evidence": [ { "database": "UniProtKB", "id": "F1SMF8", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 174, "end_pos": 176, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 691, "end_pos": 693, "annotation": "n_glycosylation_sequon" }, { "start_pos": 809, "end_pos": 811, "annotation": "n_glycosylation_sequon" }, { "start_pos": 892, "end_pos": 894, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMF8" }, { "id": "PS51059", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51059" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PARP catalytic", "eco_id": "ECO_0000259", "start_pos": 660, "end_pos": 887, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 174, "end_pos": 176 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 691, "end_pos": 693 }, { "start_pos": 809, "end_pos": 811 }, { "start_pos": 892, "end_pos": 894 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNE5-1", "uniprot_ac": "F1SNE5", "uniprot_id": "F1SNE5_PIG", "mass": { "chemical_mass": 36106.0, "monoisotopic_mass": 36106.0 }, "refseq": { "ac": "XP_020918921", "name": "endophilin-A1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918921" }, "gene_names": [ { "name": "SH3GL2", "type": "recommended", "evidence": [ { "id": "F1SNE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ] }, { "name": "SH3GL2", "type": "synonym", "evidence": [ { "id": "XP_020918921", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918921" } ] } ], "protein_names": [ { "name": "SH3 domain containing GRB2 like 2, endophilin A1", "type": "synonym", "evidence": [ { "id": "F1SNE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNE5/entry#names_and_taxonomy" } ] }, { "name": "endophilin-A1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020918921", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918921" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SH3GL2", "url": "https://www.uniprot.org/uniprotkb/F1SNE5", "locus": { "chromosome": "1", "start_pos": 205081231, "end_pos": 205285364, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005177", "url": "https://www.ensembl.org/id/ENSSSCG00000005177" } ] } } ], "crossref": [ { "id": "F1SNE5", "url": "https://alphafold.ebi.ac.uk/entry/F1SNE5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005177", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005177", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07613", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07613", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11803", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11803", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155580", "url": "https://www.ncbi.nlm.nih.gov/gene/100155580", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14167:SF50", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14167:SF50", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03114", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03114", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-182971", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-182971", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2132295", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-432720", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432720", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-432722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-437239", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-437239", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807004", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807004", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8856825", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8856828", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020918921", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918921", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D1Y277", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y277", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1Y277-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y277-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLE6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNE5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQPRREYQPKPRMSLEFPTGDSTQPNGGLSHTGTPKPAGAPMDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEILVALPH", "length": 317, "header": "tr|F1SNE5-1|F1SNE5_PIG Isoform 1 of SH3 domain containing GRB2 like 2, endophilin A1 OS=Sus scrofa OX=9823 GN=SH3GL2 PE=1 SV=4 CANONICAL=F1SNE5-1" }, "isoforms": [ { "isoform_ac": "A0A8D1Y277-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE5/entry#A0A8D1Y277-1", "sequence": { "sequence": "VSVLGLFPSRCMKVSEKVGGAEGTKLDDDFREMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQPRREYQPKPRMSLEFPTGDSTQPNGGLSHTGTPKPAGAPMDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEILVALPH", "length": 349, "header": "tr|A0A8D1Y277-1|F1SNE5_PIG Computationally mapped isoform of SH3 domain containing GRB2 like 2, endophilin A1 OS=Sus scrofa OX=9823 GN=SH3GL2 PE=1 SV=1 CANONICAL=F1SNE5-1" }, "locus": { "chromosome": "1", "start_pos": 205133256, "end_pos": 205082603, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084760.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084760.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060026.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060026.1" } ] } }, { "isoform_ac": "A0A8W4FLE6-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE5/entry#A0A8W4FLE6-1", "sequence": { "sequence": "MSVAGLKKQFHKATQKVSEKVGGAEGTKLDDDFREMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDNKTSFISASKGVSAQTSNEPGVSNWGQHSAQWGPLPHRHPQTCRCPNGSALLPSSV", "length": 264, "header": "tr|A0A8W4FLE6-1|F1SNE5_PIG Computationally mapped isoform of SH3 domain containing GRB2 like 2, endophilin A1 OS=Sus scrofa OX=9823 GN=SH3GL2 PE=1 SV=1 CANONICAL=F1SNE5-1" }, "locus": { "chromosome": "1", "start_pos": 205284861, "end_pos": 205082763, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100108.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100108.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079125.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079125.1" } ] } }, { "isoform_ac": "F1SNE5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE5/entry#F1SNE5-1", "sequence": { "sequence": "MERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQPRREYQPKPRMSLEFPTGDSTQPNGGLSHTGTPKPAGAPMDQPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVEILVALPH", "length": 317, "header": "tr|F1SNE5-1|F1SNE5_PIG Isoform 1 of SH3 domain containing GRB2 like 2, endophilin A1 OS=Sus scrofa OX=9823 GN=SH3GL2 PE=1 SV=4 CANONICAL=F1SNE5-1" }, "locus": { "chromosome": "1", "start_pos": 205132974, "end_pos": 205082603, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005707.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005707.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005565.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005565.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1Y277", "url": "https://www.uniprot.org/uniprotkb/A0A8D1Y277" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-182971", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-182971", "resource": "Reactome", "description": "EGFR downregulation" }, { "id": "R-SSC-2132295", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "resource": "Reactome", "description": "MHC class II antigen presentation" }, { "id": "R-SSC-432720", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432720", "resource": "Reactome", "description": "Lysosome Vesicle Biogenesis" }, { "id": "R-SSC-432722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "resource": "Reactome", "description": "Golgi Associated Vesicle Biogenesis" }, { "id": "R-SSC-437239", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-437239", "resource": "Reactome", "description": "Recycling pathway of L1" }, { "id": "R-SSC-6807004", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807004", "resource": "Reactome", "description": "Negative regulation of MET activity" }, { "id": "R-SSC-8856825", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "resource": "Reactome", "description": "Cargo recognition for clathrin-mediated endocytosis" }, { "id": "R-SSC-8856828", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "resource": "Reactome", "description": "Clathrin-mediated endocytosis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "membrane tubulation", "id": "GO:0097749", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097749", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "cellular response to brain-derived neurotrophic factor stimulus", "id": "GO:1990416", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990416", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "negative regulation of gene expression", "id": "GO:0010629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010629", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "negative regulation of blood-brain barrier permeability", "id": "GO:1905604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905604", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "postsynaptic actin cytoskeleton organization", "id": "GO:0098974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098974", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "negative regulation of epidermal growth factor receptor signaling pathway", "id": "GO:0042059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042059", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "negative regulation of MAPK cascade", "id": "GO:0043409", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043409", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "dendrite extension", "id": "GO:0097484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097484", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "synaptic vesicle endocytosis", "id": "GO:0048488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048488", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 10, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "photoreceptor ribbon synapse", "id": "GO:0098684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098684", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "presynaptic cytosol", "id": "GO:0099523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099523", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" }, { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "F1SNE5", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNE5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 317, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNE5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNE5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" }, { "id": "PS51021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BAR", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 214, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNE5" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 255, "end_pos": 314, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFF7-1", "uniprot_ac": "F1SFF7", "uniprot_id": "F1SFF7_PIG", "mass": { "chemical_mass": 79278.0, "monoisotopic_mass": 79278.0 }, "refseq": { "ac": "XP_001928246", "name": "E3 ubiquitin-protein ligase TRIM9 isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928246" }, "gene_names": [ { "name": "TRIM9", "type": "recommended", "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" } ] }, { "name": "TRIM9", "type": "synonym", "evidence": [ { "id": "XP_001928246", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928246" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase TRIM9", "type": "recommended", "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7/entry#names_and_taxonomy" } ] }, { "name": "E3 ubiquitin-protein ligase TRIM9 isoform X7", "type": "synonym", "evidence": [ { "id": "XP_001928246", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928246" } ] }, { "name": "RING-type E3 ubiquitin transferase TRIM9", "type": "synonym", "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7/entry#names_and_taxonomy" } ] }, { "name": "Tripartite motif-containing protein 9", "type": "synonym", "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFF7", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRIM9", "url": "https://www.uniprot.org/uniprotkb/F1SFF7", "locus": { "chromosome": "1", "start_pos": 180723287, "end_pos": 180830243, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005025", "url": "https://www.ensembl.org/id/ENSSSCG00000005025" } ] } } ], "crossref": [ { "id": "F1SFF7", "url": "https://alphafold.ebi.ac.uk/entry/F1SFF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005025", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005025", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12889", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12889", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16755", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16755", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19826", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19826", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19843", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19843", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153738", "url": "https://www.ncbi.nlm.nih.gov/gene/100153738", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003649", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003649", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049582", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153738", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153738", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PDTICTI", "url": "https://omabrowser.org/oma/group/PDTICTI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4F9F1", "url": "https://www.orthodb.org/?gene=A0A8W4F9F1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SFF7", "url": "https://www.orthodb.org/?gene=F1SFF7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22586", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22586", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928246", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928246", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4F9F1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9F1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9F1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLK5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FRA7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FRA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FRA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFF7", "url": "https://www.uniprot.org/uniprotkb/F1SFF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEMEEELKCPVCGSFYREPIILPCSHNICQACARNILVQTPESESPQSRRASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQMKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPAEGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARIKAFNKTGVSQYSKTLVLQTSEVAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTVDRYDNHPDPAFGVARIDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKTLTFFINDEQQGPVAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA", "length": 710, "header": "tr|F1SFF7-1|F1SFF7_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM9 OS=Sus scrofa OX=9823 GN=TRIM9 PE=4 SV=1 CANONICAL=F1SFF7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F9F1-1", "url": "https://www.uniprot.org/uniprotkb/F1SFF7/entry#A0A8W4F9F1-1", "sequence": { "sequence": "MEEMEEELKCPVCGSFYREPIILPCSHNICQACARNILVQTPESESPQSRRASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQMKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPAEGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARIKAFNKTGVSQYSKTLVLQTSEDTDSEEQTLPFPVPSERLPLRRMSPFSSTLNLQPSFPGRSYFDFRSSPHQLSLHSSLQSLNAPGCNFETQSAPYSQLVDIKKLLAVAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTVDRYDNHPDPAFGVARIDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKTLTFFINDEQQGPVAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA", "length": 795, "header": "tr|A0A8W4F9F1-1|F1SFF7_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase TRIM9 OS=Sus scrofa OX=9823 GN=TRIM9 PE=4 SV=1 CANONICAL=F1SFF7-1" }, "locus": { "chromosome": "1", "start_pos": 180830059, "end_pos": 180725295, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092112.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092112.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074916.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074916.1" } ] } }, { "isoform_ac": "A0A8W4FLK5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFF7/entry#A0A8W4FLK5-1", "sequence": { "sequence": "MEEMEEELKCPVCGSFYREPIILPCSHNICQACARNILVQTPESESPQSRRASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQMKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPAEGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARIKAFNKTGVSQYSKTLVLQTSEGKALQQYPSERELRGI", "length": 550, "header": "tr|A0A8W4FLK5-1|F1SFF7_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase TRIM9 OS=Sus scrofa OX=9823 GN=TRIM9 PE=4 SV=1 CANONICAL=F1SFF7-1" }, "locus": { "chromosome": "1", "start_pos": 180830059, "end_pos": 180746789, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103910.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103910.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080092.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080092.1" } ] } }, { "isoform_ac": "A0A8W4FRA7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFF7/entry#A0A8W4FRA7-1", "sequence": { "sequence": "MPRVWLLLPGAHHTALLSQYMSGSPQSRRASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQMKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPAEGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARIKAFNKTGVSQYSKTLVLQTSEDTDSEEQTLPFPVPSERLPLRRMSPFSSTLNLQPSFPGRSYFDFRSSPHQLSLHSSLQSLNAPGCNFETQSAPYSQLVDIKKLLAVAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTVDRYDNHPDPAFGVARIDVMKDVMLGKDDKAWAITEGGITKGATIGVLLDLNRKTLTFFINDEQQGPVAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA", "length": 755, "header": "tr|A0A8W4FRA7-1|F1SFF7_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase TRIM9 OS=Sus scrofa OX=9823 GN=TRIM9 PE=4 SV=1 CANONICAL=F1SFF7-1" }, "locus": { "chromosome": "1", "start_pos": 180830033, "end_pos": 180725295, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100609.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100609.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081106.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081106.1" } ] } }, { "isoform_ac": "F1SFF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFF7/entry#F1SFF7-1", "sequence": { "sequence": "MEEMEEELKCPVCGSFYREPIILPCSHNICQACARNILVQTPESESPQSRRASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQMKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPAEGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARIKAFNKTGVSQYSKTLVLQTSEVAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTVDRYDNHPDPAFGVARIDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKTLTFFINDEQQGPVAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA", "length": 710, "header": "tr|F1SFF7-1|F1SFF7_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM9 OS=Sus scrofa OX=9823 GN=TRIM9 PE=4 SV=1 CANONICAL=F1SFF7-1" }, "locus": { "chromosome": "1", "start_pos": 180830059, "end_pos": 180725295, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005541.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005541.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005403.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005403.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F9F1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9F1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153738", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153738", "resource": "KEGG Pathway" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "M9MRI4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM9", "gene_name": "Trim9", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEDELRCPTCKQLYANPVLLPCFHALCLGCALDIQTPYSPGSALPGAVNGAGAASAAGHNGLHGNGGGAGGGAAAPVTNPNGPGTRHSSHSSAASTASSNTGSESVTSDQDQSDKVSIFSEADSGVVCCSNTSRPVSYAGTGLLPGVGNVVAPPGAAYCLTCPLCRKLVFFDDGGVRNLPTYRAMEAIVDRFCAREALRCQMCETDPKVASLICEQCEIRYCDACRELTHPARGPLAKHTLVKPRGAAQQRESVCGEHEETLSQYCLSCKAPACGLCIGELRHQAHDVQSINVTCKAQKTELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQVGSMLINRVTNTDMTWHQEVTNAAPRVSPIVDLTLDDAALARAIDNLNFIQMRAVKDGDERCPAAPMTPTILPSDCSAENNSVTVAWQPPNHSFVEGYVLELDDGSGGEFREVYCGKETICTVDGLHFNSMYNARVKAFNSAGEGEYSELIGLQTAEVAWFTFDPVLSGGAGSGLIFSKNNATVSVEGWEHRVALGSVGFSRGVHYWEFTIDNYTADTDPAFGVARIDVARNKMLGKDEKSFAMYIDRQRSWFQHNSIHERRVEGGITTGSTIGVLLDLERHTLSFLVNEMPQGSVAFRDLYGVFYPAVSINRGVTLTMHTAMDAPKMDYF", "length": 740 }, "evidence": [ { "id": "F1SFF7", "url": "https://omabrowser.org/oma/group/F1SFF7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q29RQ5-1", "protein_name": "E3 ubiquitin-protein ligase TRIM9", "gene_name": "TRIM9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEMEEELKCPVCGSFYREPIILPCSHNICQACARNILVQTPESESPQSRRASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALASVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQMKASSPVPATPILQLEDCCTHNNSATLSWKQPPLSTVPAEGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARIKAFNKTGVSQYSKTLVLQTSEVAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTVDRYDNHPDPAFGVARIDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDFNRKTLTFFINDEQQGPIAFENVEGLFFPAVSLNRNVQVTLHTGLQVPDFYSSRASIA", "length": 710 }, "evidence": [ { "id": "F1SFF7", "url": "https://omabrowser.org/oma/group/F1SFF7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8C7M3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM9", "gene_name": "Trim9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSRRASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPPTHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVAADGYILELDDGSGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEAAGAHETKPMKDTDSEEQTLPFPVPSERLPLRRMSPFSSTLNLQPSFPGRSYFDFRSSPHQLSLHSSLQSLNAPGCNFETQSASYSQLVDIKKLLAVAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTIDRYDNHPDPAFGVARIDVMKDMMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKTLTFFVNNEQQGPIAFENVEGLFFPAVSLNRNVQVSLWAPGLRACSGCYFKVCPGAVKSPQAPAP", "length": 817 }, "evidence": [ { "id": "F1SFF7", "url": "https://omabrowser.org/oma/group/F1SFF7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q91ZY8-1", "protein_name": "E3 ubiquitin-protein ligase TRIM9", "gene_name": "Trim9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSRRASGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPPTHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVAADGYILELDDGSGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAFDPGSAHSDIIFSNDNLTVTCSSYDDRVVLGKTGFSKGVHYWELTIDRYDNHPDPAFGVARIDVMKDMMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKTLTFFVNNEQQGPIAFENVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA", "length": 710 }, "evidence": [ { "id": "F1SFF7", "url": "https://omabrowser.org/oma/group/F1SFF7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9C026-1", "protein_name": "E3 ubiquitin-protein ligase TRIM9", "gene_name": "TRIM9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEMEEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTPESESPQSHRAAGSGVSDYDYLDLDKMSLYSEADSGYGSYGGFASAPTTPCQKSPNGVRVFPPAMPPPATHLSPALAPVPRNSCITCPQCHRSLILDDRGLRGFPKNRVLEGVIDRYQQSKAAALKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEVAWFAFDPGSAHSDIILSNDNLTVTCSSYDDRVVLGKTGFSKGIHYWELTVDRYDNHPDPAFGVARMDVMKDVMLGKDDKAWAMYVDNNRSWFMHNNSHTNRTEGGITKGATIGVLLDLNRKNLTFFINDEQQGPIAFDNVEGLFFPAVSLNRNVQVTLHTGLPVPDFYSSRASIA", "length": 710 }, "evidence": [ { "id": "F1SFF7", "url": "https://omabrowser.org/oma/group/F1SFF7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SFF7", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SFF7", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" } ], "pmid": "" }, { "name": "synaptic vesicle", "id": "GO:0008021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008021", "evidence": [ { "database": "UniProtKB", "id": "F1SFF7", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SFF7", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SFF7", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SFF7", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 506, "end_pos": 508, "annotation": "n_glycosylation_sequon" }, { "start_pos": 517, "end_pos": 519, "annotation": "n_glycosylation_sequon" }, { "start_pos": 555, "end_pos": 557, "annotation": "n_glycosylation_sequon" }, { "start_pos": 623, "end_pos": 625, "annotation": "n_glycosylation_sequon" }, { "start_pos": 630, "end_pos": 632, "annotation": "n_glycosylation_sequon" }, { "start_pos": 635, "end_pos": 637, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983147", "name": "Release of E3 from polyubiquitinated substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFF7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 710, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFF7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFF7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 163, "end_pos": 212, "start_aa": "Ala", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 517, "end_pos": 702, "start_aa": "Asn", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" }, { "id": "PS51262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "COS", "eco_id": "ECO_0000259", "start_pos": 374, "end_pos": 432, "start_aa": "Ile", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 440, "end_pos": 535, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF7" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 50, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 236, "end_pos": 238 }, { "start_pos": 455, "end_pos": 457 }, { "start_pos": 506, "end_pos": 508 }, { "start_pos": 517, "end_pos": 519 }, { "start_pos": 555, "end_pos": 557 }, { "start_pos": 623, "end_pos": 625 }, { "start_pos": 630, "end_pos": 632 }, { "start_pos": 635, "end_pos": 637 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIQ2-1", "uniprot_ac": "F1SIQ2", "uniprot_id": "F1SIQ2_PIG", "mass": { "chemical_mass": 30415.0, "monoisotopic_mass": 30415.0 }, "refseq": {}, "gene_names": [ { "name": "GEMIN2", "type": "recommended", "evidence": [ { "id": "F1SIQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2" } ] } ], "protein_names": [ { "name": "Gem-associated protein 2", "type": "recommended", "evidence": [ { "id": "F1SIQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "The SMN complex catalyzes the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome, and thereby plays an important role in the splicing of cellular pre-mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FAH4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAH4#function" }, { "database": "UniProtKB", "id": "PIRNR038038", "url": "https://www.uniprot.org/uniprotkb/PIRNR038038#function" }, { "database": "UniProtKB", "id": "A0A5G2QXS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS7#function" }, { "database": "UniProtKB", "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2#function" }, { "database": "UniProtKB", "id": "I3L8G9", "url": "https://www.uniprot.org/uniprotkb/I3L8G9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GEMIN2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2", "locus": { "chromosome": "1", "start_pos": 169701481, "end_pos": 169676156, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004985", "url": "https://www.ensembl.org/id/ENSSSCG00000004985" } ] } } ], "crossref": [ { "id": "F1SIQ2", "url": "https://alphafold.ebi.ac.uk/entry/F1SIQ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004985", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004985", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525675", "url": "https://www.ncbi.nlm.nih.gov/gene/100525675", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR017364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035426", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035426", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A8W4FAH4", "url": "https://www.orthodb.org/?gene=A0A8W4FAH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12794", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12794", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12794:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12794:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04938", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04938", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-191859", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-191859", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QXS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1XGK4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XGK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1XGK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1XGK4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAH4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIQ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8G9", "url": "https://www.uniprot.org/uniprotkb/I3L8G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8G9-1", "url": "https://www.uniprot.org/uniprotkb/I3L8G9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWVPAEAAVEELMPQLLPVEPCDLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNVSLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQSVNRHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGERLCAEGVTVGPAASESPGIDYVQIGFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPALNLLICLVSRYFDQRDLADEPS", "length": 270, "header": "tr|F1SIQ2-1|F1SIQ2_PIG Isoform 1 of Gem-associated protein 2 OS=Sus scrofa OX=9823 GN=GEMIN2 PE=3 SV=4 CANONICAL=F1SIQ2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXS7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2/entry#A0A5G2QXS7-1", "sequence": { "sequence": "MAWVPAEAAVEELMPQLLPVEPCDLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNVSLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQSVNRHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGERLCAEGVTVGPAASESPGIDYVQIGFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVVF", "length": 240, "header": "tr|A0A5G2QXS7-1|F1SIQ2_PIG Computationally mapped isoform of Gem-associated protein 2 OS=Sus scrofa OX=9823 GN=GEMIN2 PE=3 SV=2 CANONICAL=F1SIQ2-1" }, "locus": { "chromosome": "1", "start_pos": 169699919, "end_pos": 169676200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070976.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070976.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066749.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066749.2" } ] } }, { "isoform_ac": "A0A8D1XGK4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2/entry#A0A8D1XGK4-1", "sequence": { "sequence": "MRRAGRAGLKTMAWVPAEAAVEELMPQLLPVEPCDLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNVSLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQSVNRHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGERLCAEGVTVGPAASESPGIDYVQIGFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPALNLLICLVSRGAPVAHGDSQARGLIRAVAASLHQSQQHQIQALSATFTIAHGNTGSLASLNGSRIWRCHELWCRSQMRLDHALLWFWHRLAATSPVRPVAWESPYAAGTALKK", "length": 372, "header": "tr|A0A8D1XGK4-1|F1SIQ2_PIG Computationally mapped isoform of Gem-associated protein 2 OS=Sus scrofa OX=9823 GN=GEMIN2 PE=3 SV=1 CANONICAL=F1SIQ2-1" }, "locus": { "chromosome": "1", "start_pos": 169695579, "end_pos": 169676167, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085154.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085154.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060846.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060846.1" } ] } }, { "isoform_ac": "A0A8W4FAH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2/entry#A0A8W4FAH4-1", "sequence": { "sequence": "MRRAGRAGLKTMAWVPAEAAVEELMPQLLPVEPCDLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNVSLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQSVNRHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGERLCAEGVTVGPAASESPGIDYVQIGFPPLLSIVSRMNQGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPALNLLICLVSRYFDQRDLADEPS", "length": 258, "header": "tr|A0A8W4FAH4-1|F1SIQ2_PIG Computationally mapped isoform of Gem-associated protein 2 OS=Sus scrofa OX=9823 GN=GEMIN2 PE=3 SV=1 CANONICAL=F1SIQ2-1" }, "locus": { "chromosome": "1", "start_pos": 169699950, "end_pos": 169676167, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096953.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096953.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075835.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075835.1" } ] } }, { "isoform_ac": "F1SIQ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2/entry#F1SIQ2-1", "sequence": { "sequence": "MAWVPAEAAVEELMPQLLPVEPCDLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNVSLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQSVNRHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGERLCAEGVTVGPAASESPGIDYVQIGFPPLLSIVSRMNQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPALNLLICLVSRYFDQRDLADEPS", "length": 270, "header": "tr|F1SIQ2-1|F1SIQ2_PIG Isoform 1 of Gem-associated protein 2 OS=Sus scrofa OX=9823 GN=GEMIN2 PE=3 SV=4 CANONICAL=F1SIQ2-1" }, "locus": { "chromosome": "1", "start_pos": 169699950, "end_pos": 169676200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005498.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005498.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005361.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005361.5" } ] } }, { "isoform_ac": "I3L8G9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2/entry#I3L8G9-1", "sequence": { "sequence": "MAWVPAEAAVEELMPQLLPVEPCDLTEGFDPSVPPRTPQEYLRRVQIEAAQCPDVVVAQIDPKKLKRKQSVNVSLSGCQPAPEGYSPTLQWQQQQVAQFSTVRQSVNRHRSHWKSQQLDSNVTMPKSEDEEGWKKFCLGERLCAEGVTVGPAASESPGIDYVQATVTSVLEYLSNWFGERDFTPELGRWLYALLACLEKPLLPEAHSLIRQLARRCSEVRLLVDSKDDERVPALNLLICLVSRYFDQRDLADEPS", "length": 255, "header": "tr|I3L8G9-1|I3L8G9_PIG Computationally mapped isoform of Gem-associated protein 2 OS=Sus scrofa OX=9823 GN=GEMIN2 PE=3 SV=4 CANONICAL=F1SIQ2-1" }, "locus": { "chromosome": "1", "start_pos": 169699950, "end_pos": 169676200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029560.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029560.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020329.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020329.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FAH4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-191859", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-191859", "resource": "Reactome", "description": "snRNP Assembly" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2" } ], "pmid": "" }, { "name": "SMN complex", "id": "GO:0032797", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032797", "evidence": [ { "database": "UniProtKB", "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2" } ], "pmid": "" }, { "name": "Gemini of Cajal bodies", "id": "GO:0097504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097504", "evidence": [ { "database": "UniProtKB", "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "spliceosomal snRNP assembly", "id": "GO:0000387", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000387", "evidence": [ { "database": "UniProtKB", "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2" } ], "pmid": "" }, { "name": "spliceosomal complex assembly", "id": "GO:0000245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000245", "evidence": [ { "database": "UniProtKB", "id": "F1SIQ2", "url": "https://www.uniprot.org/uniprotkb/F1SIQ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 72, "end_pos": 74, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIQ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 270, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIQ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIQ2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 72, "end_pos": 74 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGH5-1", "uniprot_ac": "F1SGH5", "uniprot_id": "F1SGH5_PIG", "mass": { "chemical_mass": 39272.0, "monoisotopic_mass": 39272.0 }, "refseq": { "ac": "NP_001231327", "name": "pyruvate dehydrogenase E1 component subunit beta, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231327" }, "gene_names": [ { "name": "PDHB", "type": "recommended", "evidence": [ { "id": "F1SGH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH5" } ] }, { "name": "PDHB", "type": "synonym", "evidence": [ { "id": "NP_001231327", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231327" } ] } ], "protein_names": [ { "name": "Pyruvate dehydrogenase E1 component subunit beta", "type": "recommended", "evidence": [ { "id": "F1SGH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH5/entry#names_and_taxonomy" } ] }, { "name": "1.2.4.1", "type": "synonym", "evidence": [ { "id": "F1SGH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH5/entry#names_and_taxonomy" } ] }, { "name": "pyruvate dehydrogenase (lipoamide) beta", "type": "synonym", "evidence": [ { "id": "NP_001231327", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231327" } ] }, { "name": "pyruvate dehydrogenase E1 beta subunit", "type": "synonym", "evidence": [ { "id": "NP_001231327", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231327" } ] }, { "name": "pyruvate dehydrogenase E1 component subunit beta, mitochondrial", "type": "synonym", "evidence": [ { "id": "NP_001231327", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231327" } ] }, { "name": "pyruvate dehydrogenase beta", "type": "synonym", "evidence": [ { "id": "NP_001231327", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231327" } ] } ], "function": [ { "annotation": "The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FBG7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBG7#function" }, { "database": "UniProtKB", "id": "RU364074", "url": "https://www.uniprot.org/uniprotkb/RU364074#function" }, { "database": "UniProtKB", "id": "A0A5G2QSU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU5#function" }, { "database": "UniProtKB", "id": "A0A4X1VDD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDD8#function" }, { "database": "UniProtKB", "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5#function" } ] }, { "annotation": "Together with PDHA1 forms the heterotetrameric E1 subunit of the pyruvate dehydrogenase (PDH) complex. The PDH complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2), and thereby links cytoplasmic glycolysis and the mitochondrial tricarboxylic acid (TCA) cycle. It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and dihydrolipoamide dehydrogenase (E3). The E1 subunit catalyzes both the thiamine pyrophosphate (TPP)-dependent decarboxylation of pyruvate and the reductive acetylation of a lipoyl group covalently linked to the lipoyl-bearing domains of E2.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FBG7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBG7#function" }, { "database": "UniProtKB", "id": "ARBA00094116", "url": "https://www.uniprot.org/uniprotkb/ARBA00094116#function" }, { "database": "UniProtKB", "id": "A0A5G2QSU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU5#function" }, { "database": "UniProtKB", "id": "A0A4X1VDD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDD8#function" }, { "database": "UniProtKB", "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PDHB", "url": "https://www.uniprot.org/uniprotkb/F1SGH5", "locus": { "chromosome": "13", "start_pos": 40160568, "end_pos": 40167476, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025881", "url": "https://www.ensembl.org/id/ENSSSCG00000025881" } ] } } ], "crossref": [ { "id": "ENSSSCG00000025881", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025881", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07036", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07036", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516042", "url": "https://www.ncbi.nlm.nih.gov/gene/100516042", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005475", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005475", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516042", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516042", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WYANCPG", "url": "https://omabrowser.org/oma/group/WYANCPG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGH5", "url": "https://www.orthodb.org/?gene=F1SGH5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11624", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11624", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11624:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11624:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02779", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02779", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204174", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204174", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5362517", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5362517", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9837999", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9861559", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9861559", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231327", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231327", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19189", "url": "https://www.rhea-db.org/rhea/19189", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VDD8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VDD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VDD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSU5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBG7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGH5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVVAGLVRRPLEQVSGLLLRRRFHRTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPAEAQSKDFLIPIGKAKIERQGTHITIVSHSRPVGHCLEAATVLSKEGIECEVINMRTIRPMDIETIEASVMKTTHLITVEGGWPQFGIGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKKTLNI", "length": 360, "header": "tr|F1SGH5-1|F1SGH5_PIG Isoform 1 of Pyruvate dehydrogenase E1 component subunit beta OS=Sus scrofa OX=9823 GN=PDHB PE=1 SV=1 CANONICAL=F1SGH5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VDD8-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH5/entry#A0A4X1VDD8-1", "sequence": { "sequence": "MAVVAGLVRRPLEQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPAEAQSKDFLIPIGKAKIERQGTHITIVSHSRPVGHCLEAATVLSKEGIECEVINMRTIRPMDIETIEASVMKTTHLITVEGGWPQFGIGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKKTLNI", "length": 341, "header": "tr|A0A4X1VDD8-1|F1SGH5_PIG Computationally mapped isoform of Pyruvate dehydrogenase E1 component subunit beta OS=Sus scrofa OX=9823 GN=PDHB PE=1 SV=1 CANONICAL=F1SGH5-1" }, "locus": { "chromosome": "13", "start_pos": 40167444, "end_pos": 40161909, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090277.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090277.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072125.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072125.1" } ] } }, { "isoform_ac": "A0A5G2QSU5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH5/entry#A0A5G2QSU5-1", "sequence": { "sequence": "MAVVAGLVRRPLEQVSGLLLRRRFHRTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEVSLSSGSRPLRRHAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPAEAQSKDFLIPIGKAKIERQGTHITIVSHSRPVGHCLEAATVLSKEGIECEVINMRTIRPMDIETIEASVMKTTHLITVEGGWPQFGIGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKKTLNI", "length": 361, "header": "tr|A0A5G2QSU5-1|F1SGH5_PIG Computationally mapped isoform of Pyruvate dehydrogenase E1 component subunit beta OS=Sus scrofa OX=9823 GN=PDHB PE=1 SV=1 CANONICAL=F1SGH5-1" }, "locus": { "chromosome": "13", "start_pos": 40167444, "end_pos": 40161909, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071279.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071279.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065067.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065067.1" } ] } }, { "isoform_ac": "A0A8W4FBG7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH5/entry#A0A8W4FBG7-1", "sequence": { "sequence": "RAAVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEVSLSSGSRPLRRHAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPAEAQSKDFLIPIGKAKIERQGTHITIVSHSRPVGHCLEAATVLSKEGIECEVINMRTIRPMDIETIEASVMKTTHLITVEGGWPQFGIGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKKTLNI", "length": 331, "header": "tr|A0A8W4FBG7-1|F1SGH5_PIG Computationally mapped isoform of Pyruvate dehydrogenase E1 component subunit beta OS=Sus scrofa OX=9823 GN=PDHB PE=1 SV=1 CANONICAL=F1SGH5-1" }, "locus": { "chromosome": "13", "start_pos": 40166316, "end_pos": 40161909, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097168.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097168.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076612.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076612.1" } ] } }, { "isoform_ac": "F1SGH5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH5/entry#F1SGH5-1", "sequence": { "sequence": "MAVVAGLVRRPLEQVSGLLLRRRFHRTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPAEAQSKDFLIPIGKAKIERQGTHITIVSHSRPVGHCLEAATVLSKEGIECEVINMRTIRPMDIETIEASVMKTTHLITVEGGWPQFGIGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKKTLNI", "length": 360, "header": "tr|F1SGH5-1|F1SGH5_PIG Isoform 1 of Pyruvate dehydrogenase E1 component subunit beta OS=Sus scrofa OX=9823 GN=PDHB PE=1 SV=1 CANONICAL=F1SGH5-1" }, "locus": { "chromosome": "13", "start_pos": 40167444, "end_pos": 40161909, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022684.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022684.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020660.1", "url": "https://www.ensembl.org/id/ENSSSCP00000020660.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FBG7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBG7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516042", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516042", "resource": "KEGG Pathway" }, { "id": "R-SSC-204174", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204174", "resource": "Reactome", "description": "Regulation of pyruvate dehydrogenase (PDH) complex" }, { "id": "R-SSC-5362517", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5362517", "resource": "Reactome", "description": "Signaling by Retinoic Acid" }, { "id": "R-SSC-9837999", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "resource": "Reactome", "description": "Mitochondrial protein degradation" }, { "id": "R-SSC-9861559", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9861559", "resource": "Reactome", "description": "PDH complex synthesizes acetyl-CoA from PYR" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P1U2-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta", "gene_name": "PDHB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAAGALRLLVPRGRLLPPRRGLRLSAPAAIQVTVRDALNQALDEELERDERVFLLGEEVAQYDGAYKISRGLWKKYGDKRIIDTPISEMGFTGIAVGAAMAGLRPVCEFMTFNFSMQAIDQVINSAAKTCYMSAGTIPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLLKASIRDDNPVVMLENELLYGVPFEMSEQAQSKDFVVPIGKAKIEREGTHVTLVAHSRPVGHCLEAASILAKEGVECEVINLRTIRPMDIETVEASVAKTNHLVTVEGGWPQFGVGSEICARIMEGPAFNYLDAPAVRVTGADVPMPYAKILEDNCIPQVKDIIFAVKKTLNI", "length": 359 }, "evidence": [ { "id": "F1SGH5", "url": "https://omabrowser.org/oma/group/F1SGH5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P11177-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial", "gene_name": "PDHB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVSGLVRRPLREVSGLLKRRFHWTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI", "length": 359 }, "evidence": [ { "id": "F1SGH5", "url": "https://omabrowser.org/oma/group/F1SGH5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11966-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial", "gene_name": "PDHB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAVVAVLVRKPLEQVSGLLRRRFHRTAPAALQVTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQSVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIETIEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKKTLNI", "length": 359 }, "evidence": [ { "id": "F1SGH5", "url": "https://omabrowser.org/oma/group/F1SGH5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P32473-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial", "gene_name": "PDB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MFSRLPTSLARNVARRAPTSFVRPSAAAAALRFSSTKTMTVREALNSAMAEELDRDDDVFLIGEEVAQYNGAYKVSKGLLDRFGERRVVDTPITEYGFTGLAVGAALKGLKPIVEFMSFNFSMQAIDHVVNSAAKTHYMSGGTQKCQMVFRGPNGAAVGVGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPYKAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVKEVLSIE", "length": 366 }, "evidence": [ { "id": "F1SGH5", "url": "https://omabrowser.org/oma/group/F1SGH5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49432-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial", "gene_name": "Pdhb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAVAGLVRGPLRQASGLLKRRFHRSAPAAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI", "length": 359 }, "evidence": [ { "id": "F1SGH5", "url": "https://omabrowser.org/oma/group/F1SGH5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q38799-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial", "gene_name": "PDH2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MLGILRQRAIDGASTLRRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGLLEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRACYRSK", "length": 363 }, "evidence": [ { "id": "F1SGH5", "url": "https://omabrowser.org/oma/group/F1SGH5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q7K5K3-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial", "gene_name": "Pdhb", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLRTRLIQAASSAQRAFSTSQKALAAKQMTVRDALNSALDDELARDDRVFILGEEVAQYDGAYKVSRGLWKKYGDKRVIDTPITEMGFAGIAVGAAMAGLRPVCEFMTWNFSMQAIDHIINSAAKTFYMSAGAVNVPIVFRGPNGAASGVAAQHSQCFAAWYAHCPGLKVLSPYDAEDARGLLKSAIRDPDPVVFLENELVYGTAFPVADNVADKDFLVPIGKAKVMRPGKDITLVAHSKAVETSLLAAAELAKKGIEAEVINLRSIRPLDTATIFASVRKTHHLVTVENGWPQHGVGAEICARIMEDQTFFELDAPVWRCAGVDVPMPYAKTLEAHALPRVQDLVEATLKVLGGKVGKAAAANK", "length": 365 }, "evidence": [ { "id": "F1SGH5", "url": "https://omabrowser.org/oma/group/F1SGH5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86HX0-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial", "gene_name": "pdhB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSSILKKIQPSLLVNFRIITRTYATKEVTVRDAINSALDEELARDEKVFIMGEEVAQYNGAYKITKGLFDKYGGDRIIDTPITEAGFAGIGVGAAMAGTRPIIEFMTFNFAMQAIDHIINSSAKTHYMSGGKVFNPIVWRGPNGPPTAVGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEISALMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKRVTQRNK", "length": 356 }, "evidence": [ { "id": "F1SGH5", "url": "https://omabrowser.org/oma/group/F1SGH5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9D051-1", "protein_name": "Pyruvate dehydrogenase E1 component subunit beta, mitochondrial", "gene_name": "Pdhb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVVAGLVRGPLRQASGLLKRRFHRSAPAAVQLTVREAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSAGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKVLEDNSVPQVKDIIFAVKKTLNI", "length": 359 }, "evidence": [ { "id": "F1SGH5", "url": "https://omabrowser.org/oma/group/F1SGH5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5" } ], "pmid": "" }, { "name": "pyruvate dehydrogenase complex", "id": "GO:0045254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045254", "evidence": [ { "database": "UniProtKB", "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5" } ], "pmid": "" }, { "name": "pyruvate dehydrogenase (acetyl-transferring) activity", "id": "GO:0004739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004739", "evidence": [ { "database": "UniProtKB", "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "glucose metabolic process", "id": "GO:0006006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006006", "evidence": [ { "database": "UniProtKB", "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5" } ], "pmid": "" }, { "name": "pyruvate decarboxylation to acetyl-CoA", "id": "GO:0006086", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006086", "evidence": [ { "database": "UniProtKB", "id": "F1SGH5", "url": "https://www.uniprot.org/uniprotkb/F1SGH5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19189", "name": "", "equation": "N(6)-[(R)-lipoyl]-L-lysyl-[protein] + pyruvate + H(+) = N(6)-[(R)-S(8)-acetyldihydrolipoyl]-L-lysyl-[protein] + CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19189", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19189" } ] }, { "id": "R-SSC-203946", "name": "PDK isozymes phosphorylate PDHC subunit E1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-203946", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-203946" } ] }, { "id": "R-SSC-204169", "name": "PDP1,2 dephosphorylate p-lipo-PDH", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-204169", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204169" } ] }, { "id": "R-SSC-9838035", "name": "CLPXP binds mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838035", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838035" } ] }, { "id": "R-SSC-9838081", "name": "LONP1 degrades mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838081", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838081" } ] }, { "id": "R-SSC-9838093", "name": "LONP1 binds mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838093", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838093" } ] }, { "id": "R-SSC-9838289", "name": "CLPXP degrades mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838289", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838289" } ] }, { "id": "R-SSC-9861616", "name": "DLD dimer dehydrogenates dihydrolipoyl", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [ "R-SSC-9861664" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9861616", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9861616" } ] }, { "id": "R-SSC-9861667", "name": "DLAT trimer transfers acetyl to CoA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial inner membrane, mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9861667", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9861667" } ] }, { "id": "R-SSC-9861734", "name": "PDH E1 decarboxylates PYR, transferring acetyl to DLAT", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial inner membrane, mitochondrial matrix", "input_participant_list": [ "R-SSC-69969" ], "output_participant_list": [ "R-SSC-9861594" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9861734", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9861734" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-69969", "participant_name": "DLAT [mitochondrial matrix]", "crossref": [ { "id": "A0A5G2QLQ1", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000015030", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000063005", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000078875", "database": "ENSEMBL", "url": "" }, { "id": "9J1W", "database": "PDB", "url": "" }, { "id": "87325", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9861594", "participant_name": "DLAT [mitochondrial matrix]", "crossref": [ { "id": "ENSSSCP00000063005", "database": "ENSEMBL", "url": "" }, { "id": "A0A5G2QLQ1", "database": "UniProt", "url": "" }, { "id": "9J1W", "database": "PDB", "url": "" }, { "id": "87325", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000078875", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000015030", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9861664", "participant_name": "DLAT [mitochondrial matrix]", "crossref": [ { "id": "A0A5G2QLQ1", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000015030", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000063005", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000078875", "database": "ENSEMBL", "url": "" }, { "id": "9J1W", "database": "PDB", "url": "" }, { "id": "87325", "database": "VGNC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH5" }, { "id": "SM00861", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00861" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transketolase-like pyrimidine-binding", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 209, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 115, "end_pos": 117 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLS8-1", "uniprot_ac": "F1SLS8", "uniprot_id": "F1SLS8_PIG", "mass": { "chemical_mass": 48472.0, "monoisotopic_mass": 48472.0 }, "refseq": {}, "gene_names": [ { "name": "SLC35A5", "type": "recommended", "evidence": [ { "id": "F1SLS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLS8" } ] } ], "protein_names": [ { "name": "Solute carrier family 35 member A5", "type": "synonym", "evidence": [ { "id": "F1SLS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLS8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLS8", "url": "https://www.uniprot.org/uniprotkb/F1SLS8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC35A5", "url": "https://www.uniprot.org/uniprotkb/F1SLS8", "locus": { "chromosome": "13", "start_pos": 147258578, "end_pos": 147279336, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011929", "url": "https://www.ensembl.org/id/ENSSSCG00000011929" } ] } } ], "crossref": [ { "id": "F1SLS8", "url": "https://alphafold.ebi.ac.uk/entry/F1SLS8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011929", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011929", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10231", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10231", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04142", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04142", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QYM6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBH1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLS8", "url": "https://www.uniprot.org/uniprotkb/F1SLS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLS8-1", "url": "https://www.uniprot.org/uniprotkb/F1SLS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESTCCGLPVLCSWSTMYAFLLGVVFIALSSSRILLVKYSANEENKYDYLPTTVNMCSELVKLVFCVLVSFWVIKKDRQNRTLRCGSWKKFFNIMKWSVPAFLYYLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLNWIQWASLLILFLSIVALTSGTETSQHNLVGHGFHHDAFFSPSNSCLLFRSECPRKDNCTAKEWTFSEARWNTTAQVFSHIRLGLGHILIIVQCFISSMANIYNEKIMKEGNQLTENIFVQNSKLYFFGVFFNGLTLGLQSNNRDQIKNCGFFYGHNAFSVALIFVTAIQGLSVAFILKFLDNMFHVMMAQVTTVIITTVSVLVFDFRPSLEFFLEAPSVLLSIFIYNASKPQGFEYAPRQERIRDLNCSLWERSSGDGEELERLTKPSDIESDDTF", "length": 423, "header": "tr|F1SLS8-1|F1SLS8_PIG Isoform 1 of Solute carrier family 35 member A5 OS=Sus scrofa OX=9823 GN=SLC35A5 PE=3 SV=4 CANONICAL=F1SLS8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYM6-1", "url": "https://www.uniprot.org/uniprotkb/F1SLS8/entry#A0A5G2QYM6-1", "sequence": { "sequence": "MYTLYRTKLIIKHFCYISENKYDYLPTTVNMCSELVKLVFCVLVSFWVIKKEDRQNRTLRCGSWKKFFNIMKWSVPAFLYYLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLNWIQWASLLILFLSIVALTSGTETSQHNLVGHGFHHDAFFSPSNSCLLFRTSLKVLNMHPGKKESEI", "length": 189, "header": "tr|A0A5G2QYM6-1|F1SLS8_PIG Computationally mapped isoform of Solute carrier family 35 member A5 OS=Sus scrofa OX=9823 GN=SLC35A5 PE=3 SV=2 CANONICAL=F1SLS8-1" }, "locus": { "chromosome": "13", "start_pos": 147273205, "end_pos": 147260353, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091402.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091402.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070016.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070016.2" } ] } }, { "isoform_ac": "A0A8W4FBH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SLS8/entry#A0A8W4FBH1-1", "sequence": { "sequence": "MESTCCGLPVLCSWSTMYAFLLGVVFIALSSSRILLVKYSANEENKYDYLPTTVNMCSELVKLVFCVLVSFWVIKKDRQNRTLRCGSWKKFFNIMKWSVPAFLYYLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLNWIQWASLLILFLSIVALTSGTETSQHNLVGHGFHHDAFFSPSNSCLLFRSPHWSFSKPHQFFSPYLFITPASLKVLNMHPGKKESEI", "length": 234, "header": "tr|A0A8W4FBH1-1|F1SLS8_PIG Computationally mapped isoform of Solute carrier family 35 member A5 OS=Sus scrofa OX=9823 GN=SLC35A5 PE=3 SV=1 CANONICAL=F1SLS8-1" }, "locus": { "chromosome": "13", "start_pos": 147278276, "end_pos": 147260353, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097982.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097982.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075640.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075640.1" } ] } }, { "isoform_ac": "F1SLS8-1", "url": "https://www.uniprot.org/uniprotkb/F1SLS8/entry#F1SLS8-1", "sequence": { "sequence": "MESTCCGLPVLCSWSTMYAFLLGVVFIALSSSRILLVKYSANEENKYDYLPTTVNMCSELVKLVFCVLVSFWVIKKDRQNRTLRCGSWKKFFNIMKWSVPAFLYYLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRIVLKRHLNWIQWASLLILFLSIVALTSGTETSQHNLVGHGFHHDAFFSPSNSCLLFRSECPRKDNCTAKEWTFSEARWNTTAQVFSHIRLGLGHILIIVQCFISSMANIYNEKIMKEGNQLTENIFVQNSKLYFFGVFFNGLTLGLQSNNRDQIKNCGFFYGHNAFSVALIFVTAIQGLSVAFILKFLDNMFHVMMAQVTTVIITTVSVLVFDFRPSLEFFLEAPSVLLSIFIYNASKPQGFEYAPRQERIRDLNCSLWERSSGDGEELERLTKPSDIESDDTF", "length": 423, "header": "tr|F1SLS8-1|F1SLS8_PIG Isoform 1 of Solute carrier family 35 member A5 OS=Sus scrofa OX=9823 GN=SLC35A5 PE=3 SV=4 CANONICAL=F1SLS8-1" }, "locus": { "chromosome": "13", "start_pos": 147278276, "end_pos": 147258581, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013053.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013053.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012710.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012710.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FBH1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SLS8", "url": "https://www.uniprot.org/uniprotkb/F1SLS8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pyrimidine nucleotide-sugar transmembrane transporter activity", "id": "GO:0015165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015165", "evidence": [ { "database": "UniProtKB", "id": "F1SLS8", "url": "https://www.uniprot.org/uniprotkb/F1SLS8" } ], "pmid": "" }, { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1SLS8", "url": "https://www.uniprot.org/uniprotkb/F1SLS8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "F1SLS8", "url": "https://www.uniprot.org/uniprotkb/F1SLS8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLS8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 423, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLS8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLS8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 204, "end_pos": 206 }, { "start_pos": 218, "end_pos": 220 }, { "start_pos": 374, "end_pos": 376 }, { "start_pos": 394, "end_pos": 396 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG87-1", "uniprot_ac": "F1SG87", "uniprot_id": "F1SG87_PIG", "mass": { "chemical_mass": 51619.0, "monoisotopic_mass": 51619.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100156142", "type": "recommended", "evidence": [ { "id": "F1SG87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ] } ], "protein_names": [ { "name": "5-hydroxytryptamine receptor 3C", "type": "recommended", "evidence": [ { "id": "F1SG87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG87/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Forms serotonin (5-hydroxytryptamine/5-HT3)-activated cation-selective channel complexes, which when activated cause fast, depolarizing responses in neurons.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FC96", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC96#function" }, { "database": "UniProtKB", "id": "ARBA00037540", "url": "https://www.uniprot.org/uniprotkb/ARBA00037540#function" }, { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100156142", "url": "https://www.uniprot.org/uniprotkb/F1SG87", "locus": {} } ], "crossref": [ { "id": "F1SG87", "url": "https://alphafold.ebi.ac.uk/entry/F1SG87", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR006029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038050", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038050", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18945", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18945", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02932", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02932", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-112314", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112314", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "29463", "url": "https://www.rhea-db.org/rhea/29463", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "29671", "url": "https://www.rhea-db.org/rhea/29671", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "34963", "url": "https://www.rhea-db.org/rhea/34963", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FC96", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC96-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG87-1", "url": "https://www.uniprot.org/uniprotkb/F1SG87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERGWLHGEGFFLCLILHLLHQGRGGTFPINCSGFDQHGVNPAAFQAVFDRKAFRPVTNFSVPTHVNISFTLSAILEVDARLQLMTSFLWLNMVWYNPFIRWNPEECGGIKKLSIATENLWLPDIFIEEFMDMDQTPPGLMAYVNSDGHIKYSKPMRMVSICKLDIFYFPFDEQNCTLTFSSFIYTVENMVLGMEQDVQEISKTSQNVVWSKGEWVLQGIHQRMKMTTVGTNEYNQIVFYVAIRRRPTLYVINLLVPSSFLVAIDALSFYLPAESENRAPFKITLLLGYNVFLLMMNDLLPISGTPLISVYFALCLSLMVVSLLETIFITYLLHLAATQPPPLPRWLHSLLLHCTSPRKCCPVVAPQRGNSGQDLGPAHLPGTKEPVELVGKGPGPREAELSGCPGSASTQPEDEAQKQHLVSLWVQCSHMMDSLLFRLYLLFLATSITTVIVLWNT", "length": 457, "header": "tr|F1SG87-1|F1SG87_PIG Isoform 1 of 5-hydroxytryptamine receptor 3C OS=Sus scrofa OX=9823 GN=LOC100156142 PE=3 SV=2 CANONICAL=F1SG87-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FC96-1", "url": "https://www.uniprot.org/uniprotkb/F1SG87/entry#A0A8W4FC96-1", "sequence": { "sequence": "MERGWLHGEGFFLCLILHLLHQGRGGTFPINCSGFDQHGVNPAAFQAVFDRKAFRPVTNFSVPTHVNISFTLSAILEVVWYNPFIRWNPEECGGIKKLSIATENLWLPDIFIEEFMDMDQTPPGLMAYVNSDGHIKYSKPMRMVSICKLDIFYFPFDEQNCTLTFSSFIYTVENMVLGMEQDVQEISKTSQNVVWSKGEWVLQGIHQRMKMTTVGTNEYNQIVFYVAIRRRPTLYVINLLVPSSFLVAIDALSFYLPAESENRAPFKITLLLGYNVFLLMMNDLLPISGTPLISVYFALCLSLMVVSLLETIFITYLLHLAATQPPPLPRWLHSLLLHCTSPRKCCPVVAPQRGNSGQDLGPAHLPGTKEPVELVGKGPGPREAELSGCPGSASTQPEDEAQKQHLVSLWVQCSHMMDSLLFRLYLLFLATSITTVIVLWNT", "length": 442, "header": "tr|A0A8W4FC96-1|F1SG87_PIG Computationally mapped isoform of 5-hydroxytryptamine receptor 3C OS=Sus scrofa OX=9823 GN=LOC100156142 PE=3 SV=1 CANONICAL=F1SG87-1" }, "locus": { "chromosome": "13", "start_pos": 121975214, "end_pos": 121969656, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100804.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100804.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076883.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076883.1" } ] } }, { "isoform_ac": "F1SG87-1", "url": "https://www.uniprot.org/uniprotkb/F1SG87/entry#F1SG87-1", "sequence": { "sequence": "MERGWLHGEGFFLCLILHLLHQGRGGTFPINCSGFDQHGVNPAAFQAVFDRKAFRPVTNFSVPTHVNISFTLSAILEVDARLQLMTSFLWLNMVWYNPFIRWNPEECGGIKKLSIATENLWLPDIFIEEFMDMDQTPPGLMAYVNSDGHIKYSKPMRMVSICKLDIFYFPFDEQNCTLTFSSFIYTVENMVLGMEQDVQEISKTSQNVVWSKGEWVLQGIHQRMKMTTVGTNEYNQIVFYVAIRRRPTLYVINLLVPSSFLVAIDALSFYLPAESENRAPFKITLLLGYNVFLLMMNDLLPISGTPLISVYFALCLSLMVVSLLETIFITYLLHLAATQPPPLPRWLHSLLLHCTSPRKCCPVVAPQRGNSGQDLGPAHLPGTKEPVELVGKGPGPREAELSGCPGSASTQPEDEAQKQHLVSLWVQCSHMMDSLLFRLYLLFLATSITTVIVLWNT", "length": 457, "header": "tr|F1SG87-1|F1SG87_PIG Isoform 1 of 5-hydroxytryptamine receptor 3C OS=Sus scrofa OX=9823 GN=LOC100156142 PE=3 SV=2 CANONICAL=F1SG87-1" }, "locus": { "chromosome": "13", "start_pos": 121975214, "end_pos": 121969656, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012896.3", "url": "https://www.ensembl.org/id/ENSSSCT00000012896.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012555.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012555.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FC96", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-112314", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-112314", "resource": "Reactome", "description": "Neurotransmitter receptors and postsynaptic signal transmission" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "extracellular ligand-gated monoatomic ion channel activity", "id": "GO:0005230", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005230", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "serotonin-gated monoatomic cation channel activity", "id": "GO:0022850", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022850", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential", "id": "GO:1904315", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904315", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "excitatory extracellular ligand-gated monoatomic ion channel activity", "id": "GO:0005231", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005231", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "postsynaptic membrane", "id": "GO:0045211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045211", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "transmembrane transporter complex", "id": "GO:1902495", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902495", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of membrane potential", "id": "GO:0042391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042391", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "chemical synaptic transmission", "id": "GO:0007268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007268", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "monoatomic ion transmembrane transport", "id": "GO:0034220", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034220", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" }, { "name": "serotonin-gated cation-selective signaling pathway", "id": "GO:0140227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140227", "evidence": [ { "database": "UniProtKB", "id": "F1SG87", "url": "https://www.uniprot.org/uniprotkb/F1SG87" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29463", "name": "", "equation": "K(+)(in) = K(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29463", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29463" } ] }, { "id": "29671", "name": "", "equation": "Ca(2+)(in) = Ca(2+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29671", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29671" } ] }, { "id": "34963", "name": "", "equation": "Na(+)(in) = Na(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "34963", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/34963" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG87-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 457, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG87-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG87" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG87" }, { "id": "PF02931", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02931" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neurotransmitter-gated ion-channel ligand-binding", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 247, "start_aa": "Lys", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SG87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG87" }, { "id": "PF02932", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02932" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Neurotransmitter-gated ion-channel transmembrane", "eco_id": "ECO_0000259", "start_pos": 254, "end_pos": 360, "start_aa": "Leu", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 175, "end_pos": 177 }, { "start_pos": 31, "end_pos": 33 }, { "start_pos": 59, "end_pos": 61 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM56-1", "uniprot_ac": "F1SM56", "uniprot_id": "F1SM56_PIG", "mass": { "chemical_mass": 28420.0, "monoisotopic_mass": 28420.0 }, "refseq": {}, "gene_names": [ { "name": "SEC11C", "type": "recommended", "evidence": [ { "id": "F1SM56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM56" } ] } ], "protein_names": [ { "name": "Signal peptidase complex catalytic subunit SEC11", "type": "recommended", "evidence": [ { "id": "F1SM56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM56/entry#names_and_taxonomy" } ] }, { "name": "3.4.21.89", "type": "synonym", "evidence": [ { "id": "F1SM56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM56/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalytic component of the signal peptidase complex (SPC) which catalyzes the cleavage of N-terminal signal sequences from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Specifically cleaves N-terminal signal peptides that contain a hydrophobic alpha-helix (h-region) shorter than 18-20 amino acids.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCG2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCG2#function" }, { "database": "UniProtKB", "id": "ARBA00045533", "url": "https://www.uniprot.org/uniprotkb/ARBA00045533#function" }, { "database": "UniProtKB", "id": "A0A8W4FNF3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNF3#function" }, { "database": "UniProtKB", "id": "F1SM56", "url": "https://www.uniprot.org/uniprotkb/F1SM56#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM56", "url": "https://www.uniprot.org/uniprotkb/F1SM56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEC11C", "url": "https://www.uniprot.org/uniprotkb/F1SM56", "locus": { "chromosome": "1", "start_pos": 161754505, "end_pos": 161769526, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004912", "url": "https://www.ensembl.org/id/ENSSSCG00000004912" } ] } } ], "crossref": [ { "id": "F1SM56", "url": "https://alphafold.ebi.ac.uk/entry/F1SM56", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004912", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004912", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06530", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06530", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001733", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001733", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019533", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019533", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036286", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036286", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10806", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10806", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10806:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10806:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00717", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00717", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FCG2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNF3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNF3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNF3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM56", "url": "https://www.uniprot.org/uniprotkb/F1SM56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM56-1", "url": "https://www.uniprot.org/uniprotkb/F1SM56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGQGSGAGSFPSLGALGLHWTRLLSRGILGVVVSSYQFFAGTQVAQTHRTTISQTPKRASGHVANKAGGRGPGRCSAAVCDTRSPRVASAPRDPGMVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGCTKKGKTGSKRRTWWEEPEGFYRMLAWSP", "length": 261, "header": "tr|F1SM56-1|F1SM56_PIG Isoform 1 of Signal peptidase complex catalytic subunit SEC11 OS=Sus scrofa OX=9823 GN=SEC11C PE=1 SV=3 CANONICAL=F1SM56-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FCG2-1", "url": "https://www.uniprot.org/uniprotkb/F1SM56/entry#A0A8W4FCG2-1", "sequence": { "sequence": "MVGQGSGAGSFPSLGALGLHWTRLLSRGILGVVVSSYQFFAGTQVAQTHRTTISQTPKRASGHVANKAGGRGPGRCSAAVCDTRSPRVASAPRDPGMVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGCTKKGKTGSKRRTWWEEPEGK", "length": 253, "header": "tr|A0A8W4FCG2-1|F1SM56_PIG Computationally mapped isoform of Signal peptidase complex catalytic subunit SEC11 OS=Sus scrofa OX=9823 GN=SEC11C PE=1 SV=1 CANONICAL=F1SM56-1" }, "locus": { "chromosome": "1", "start_pos": 161769464, "end_pos": 161757933, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100193.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100193.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076953.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076953.1" } ] } }, { "isoform_ac": "A0A8W4FNF3-1", "url": "https://www.uniprot.org/uniprotkb/F1SM56/entry#A0A8W4FNF3-1", "sequence": { "sequence": "MVGQGSGAGSFPSLGALGLHWTRLLSRGILGVVVSSYQFFAGTQVAQTHRTTISQTPKRASGHVANKAGGRGPGRCSAAVCDTRSPRVASAPRDPGMVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGYKEGQNWLEKKDVVGRARGMLFWL", "length": 256, "header": "tr|A0A8W4FNF3-1|F1SM56_PIG Computationally mapped isoform of Signal peptidase complex catalytic subunit SEC11 OS=Sus scrofa OX=9823 GN=SEC11C PE=1 SV=1 CANONICAL=F1SM56-1" }, "locus": { "chromosome": "1", "start_pos": 161769464, "end_pos": 161755038, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098655.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098655.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080727.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080727.1" } ] } }, { "isoform_ac": "F1SM56-1", "url": "https://www.uniprot.org/uniprotkb/F1SM56/entry#F1SM56-1", "sequence": { "sequence": "MVGQGSGAGSFPSLGALGLHWTRLLSRGILGVVVSSYQFFAGTQVAQTHRTTISQTPKRASGHVANKAGGRGPGRCSAAVCDTRSPRVASAPRDPGMVRAGAVGSHLPTSGLDIFGDLRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEKDNGDIKFLTKGDNNEVDDRGCTKKGKTGSKRRTWWEEPEGFYRMLAWSP", "length": 261, "header": "tr|F1SM56-1|F1SM56_PIG Isoform 1 of Signal peptidase complex catalytic subunit SEC11 OS=Sus scrofa OX=9823 GN=SEC11C PE=1 SV=3 CANONICAL=F1SM56-1" }, "locus": { "chromosome": "1", "start_pos": 161769464, "end_pos": 161755697, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005420.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005420.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005285.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005285.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCG2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCG2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1SM56", "url": "https://www.uniprot.org/uniprotkb/F1SM56" } ], "pmid": "" }, { "name": "signal peptidase activity", "id": "GO:0009003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009003", "evidence": [ { "database": "UniProtKB", "id": "F1SM56", "url": "https://www.uniprot.org/uniprotkb/F1SM56" } ], "pmid": "" }, { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "F1SM56", "url": "https://www.uniprot.org/uniprotkb/F1SM56" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal peptide processing", "id": "GO:0006465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006465", "evidence": [ { "database": "UniProtKB", "id": "F1SM56", "url": "https://www.uniprot.org/uniprotkb/F1SM56" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "signal peptidase complex", "id": "GO:0005787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005787", "evidence": [ { "database": "UniProtKB", "id": "F1SM56", "url": "https://www.uniprot.org/uniprotkb/F1SM56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SM56-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 261, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SM56-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SM56" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SM56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM56" }, { "id": "PF00717", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00717" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S24/S26A/S26B/S26C", "eco_id": "ECO_0000259", "start_pos": 150, "end_pos": 235, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SL08-1", "uniprot_ac": "F1SL08", "uniprot_id": "F1SL08_PIG", "mass": { "chemical_mass": 72144.0, "monoisotopic_mass": 72144.0 }, "refseq": { "ac": "XP_013843898", "name": "probable polypeptide N-acetylgalactosaminyltransferase 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843898" }, "gene_names": [ { "name": "GALNT8", "type": "recommended", "evidence": [ { "id": "F1SL08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL08" } ] }, { "name": "GALNT8", "type": "synonym", "evidence": [ { "id": "XP_013843898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843898" } ] } ], "protein_names": [ { "name": "Polypeptide N-acetylgalactosaminyltransferase", "type": "recommended", "evidence": [ { "id": "F1SL08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL08/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.-", "type": "synonym", "evidence": [ { "id": "F1SL08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL08/entry#names_and_taxonomy" } ] }, { "name": "Protein-UDP acetylgalactosaminyltransferase", "type": "synonym", "evidence": [ { "id": "F1SL08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL08/entry#names_and_taxonomy" } ] }, { "name": "probable polypeptide N-acetylgalactosaminyltransferase 8 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013843898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843898" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SL08", "url": "https://www.uniprot.org/uniprotkb/F1SL08" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GALNT8", "url": "https://www.uniprot.org/uniprotkb/F1SL08", "locus": { "chromosome": "5", "start_pos": 65696868, "end_pos": 65735536, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000718", "url": "https://www.ensembl.org/id/ENSSSCG00000000718" } ] } } ], "crossref": [ { "id": "F1SL08", "url": "https://alphafold.ebi.ac.uk/entry/F1SL08", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000718", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000718", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02510", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02510", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522491", "url": "https://www.ncbi.nlm.nih.gov/gene/100522491", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522491", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522491", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SL08", "url": "https://www.orthodb.org/?gene=F1SL08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11675", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11675", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11675:SF50", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11675:SF50", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00535", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00535", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-913709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013843898", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843898", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FES6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FES6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FES6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FES6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL08", "url": "https://www.uniprot.org/uniprotkb/F1SL08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL08-1", "url": "https://www.uniprot.org/uniprotkb/F1SL08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRRSVPRVLGLGLMLVFALNLLLILYAKGILQKLALGDIQERLHLPPSEWNRTAMERLSRLEMDLQHLKEHMKLAMKQPKNVDTPPEWVRDESRPVQKAVEAKERARKDQKPKELLFPNSVLFQKWGEDLSEEEQKKAEALFQKFGYNVYLSDQLPLARTIPDTRDPRCLWKRYSSQLPSLSVILIFVNEALSVIQRAIASIISRTPPQLLKEIILVDDFSSNGELKAHLDEEIKLYNQKSPGLLKIIRHAERKGLAAARNTGREAATADVVAILDAHVEVNVGWAEPILARIQQDRTVIVSPVFDKIHFDTLELEKYALAVDGFNWELWCRYDSLPKAWVDLHDVTAPVKSPSIMGILAANRLFLEEIGSLDGGMATYGGENVELSLRVWQCGGRIEVLPCSRVAHLERHHKPYALDLSLPLMRNALRVAEIWMDEHKDMVYMAWNIPLQNSGIDIGDISFRKALREKLKCRSFDWYLKNVYPVLKPIHSIVGYGRMKNPLDESVCLDQGASPHKSPIMYRCHQYSSQNVYYHLTGEFYVGPLIAKTDAEDNCLTDPGKGEKPTLEPCSKAVENGLYIHWDFKPGRAVINRATKRCLEIKKASLDGYLLVLQTCTAQVWTIQYTVRNWGSS", "length": 633, "header": "tr|F1SL08-1|F1SL08_PIG Isoform 1 of Polypeptide N-acetylgalactosaminyltransferase OS=Sus scrofa OX=9823 GN=GALNT8 PE=3 SV=2 CANONICAL=F1SL08-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FES6-1", "url": "https://www.uniprot.org/uniprotkb/F1SL08/entry#A0A8W4FES6-1", "sequence": { "sequence": "MHAMLRRSVPRVLGLGLMLVFALNLLLILYAKGILQKLALGDIQERLHLPPSEWNRTAMERLSRLEMDLQHLKEHMKLAMKQPKNVDTPPEWVRDESRPVQKAVEAKERARKDQKPKELLFPNSVLFQKWGEDLSEEEQKKAEALFQKFGYNVYLSDQLPLARTIPDTRDPRCLWKRYSSQLPSLSVILIFVNEALSVIQRAIASIISRTPPQLLKEIILVDDFSSNGELKAHLDEEIKLYNQKSPGLLKIIRHAERKGLAAARNTGREAATADVVAILDAHVEVNVGWAEPILARIQQDRTVIVSPVFDKIHFDTLELEKYALAVDGFNWELWCRYDSLPKAWVDLHDVTAPVKSPSIMGILAANRLFLEEIGSLDGGMATYGGENVELSLRVWQCGGRIEVLPCSRVAHLERHHKPYALDLSLPLMRNALRVAEIWMDEHKDMVYMAWNIPLQNSGIDIGDISFRKALREKLKCRSFDWYLKNVYPVLKPIHSIVGYGRMKNPLDESVCLDQGASPHKSPIMYRCHQYSSQNVYYHLTGEFYVGPLIAKTDAEDNCLTDPGKGEKPTLEPCSKAVENGLYIHWDFKPGRAVINRATKRCLEIKKASLDGYLLVLQTCTAQVWTIQYTVRNWGSS", "length": 636, "header": "tr|A0A8W4FES6-1|F1SL08_PIG Computationally mapped isoform of Polypeptide N-acetylgalactosaminyltransferase OS=Sus scrofa OX=9823 GN=GALNT8 PE=3 SV=1 CANONICAL=F1SL08-1" }, "locus": { "chromosome": "5", "start_pos": 65735434, "end_pos": 65697872, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101498.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101498.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077362.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077362.1" } ] } }, { "isoform_ac": "F1SL08-1", "url": "https://www.uniprot.org/uniprotkb/F1SL08/entry#F1SL08-1", "sequence": { "sequence": "MLRRSVPRVLGLGLMLVFALNLLLILYAKGILQKLALGDIQERLHLPPSEWNRTAMERLSRLEMDLQHLKEHMKLAMKQPKNVDTPPEWVRDESRPVQKAVEAKERARKDQKPKELLFPNSVLFQKWGEDLSEEEQKKAEALFQKFGYNVYLSDQLPLARTIPDTRDPRCLWKRYSSQLPSLSVILIFVNEALSVIQRAIASIISRTPPQLLKEIILVDDFSSNGELKAHLDEEIKLYNQKSPGLLKIIRHAERKGLAAARNTGREAATADVVAILDAHVEVNVGWAEPILARIQQDRTVIVSPVFDKIHFDTLELEKYALAVDGFNWELWCRYDSLPKAWVDLHDVTAPVKSPSIMGILAANRLFLEEIGSLDGGMATYGGENVELSLRVWQCGGRIEVLPCSRVAHLERHHKPYALDLSLPLMRNALRVAEIWMDEHKDMVYMAWNIPLQNSGIDIGDISFRKALREKLKCRSFDWYLKNVYPVLKPIHSIVGYGRMKNPLDESVCLDQGASPHKSPIMYRCHQYSSQNVYYHLTGEFYVGPLIAKTDAEDNCLTDPGKGEKPTLEPCSKAVENGLYIHWDFKPGRAVINRATKRCLEIKKASLDGYLLVLQTCTAQVWTIQYTVRNWGSS", "length": 633, "header": "tr|F1SL08-1|F1SL08_PIG Isoform 1 of Polypeptide N-acetylgalactosaminyltransferase OS=Sus scrofa OX=9823 GN=GALNT8 PE=3 SV=2 CANONICAL=F1SL08-1" }, "locus": { "chromosome": "5", "start_pos": 65735337, "end_pos": 65697872, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000781.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000781.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000765.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000765.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FES6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FES6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522491", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522491", "resource": "KEGG Pathway" }, { "id": "R-SSC-913709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "resource": "Reactome", "description": "O-linked glycosylation of mucins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SL08", "url": "https://www.uniprot.org/uniprotkb/F1SL08" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SL08", "url": "https://www.uniprot.org/uniprotkb/F1SL08" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SL08", "url": "https://www.uniprot.org/uniprotkb/F1SL08" } ], "pmid": "" }, { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "F1SL08", "url": "https://www.uniprot.org/uniprotkb/F1SL08" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1SL08", "url": "https://www.uniprot.org/uniprotkb/F1SL08" } ], "pmid": "" }, { "name": "polypeptide N-acetylgalactosaminyltransferase activity", "id": "GO:0004653", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004653", "evidence": [ { "database": "UniProtKB", "id": "F1SL08", "url": "https://www.uniprot.org/uniprotkb/F1SL08" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein O-linked glycosylation", "id": "GO:0006493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006493", "evidence": [ { "database": "UniProtKB", "id": "F1SL08", "url": "https://www.uniprot.org/uniprotkb/F1SL08" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-913675", "name": "GALNTs transfer GalNAc to Mucins to form Tn antigens", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [ "R-ALL-9942384" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-913675", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913675" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-9942384", "participant_name": "UDP-GalNAc [Golgi lumen]", "crossref": [ { "id": "67138", "database": "ChEBI", "url": "" }, { "id": "ZINC000008551132", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SL08-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 633, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SL08-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SL08" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SL08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL08" }, { "id": "PF00535", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00535" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyltransferase 2-like", "eco_id": "ECO_0000259", "start_pos": 183, "end_pos": 319, "start_aa": "Ser", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SL08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL08" }, { "id": "PF00652", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00652" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ricin B lectin", "eco_id": "ECO_0000259", "start_pos": 496, "end_pos": 619, "start_aa": "Tyr", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 52, "end_pos": 54 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG49-1", "uniprot_ac": "F1SG49", "uniprot_id": "F1SG49_PIG", "mass": { "chemical_mass": 86378.0, "monoisotopic_mass": 86378.0 }, "refseq": {}, "gene_names": [ { "name": "RIPK4", "type": "recommended", "evidence": [ { "id": "F1SG49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ] } ], "protein_names": [ { "name": "Receptor-interacting serine/threonine-protein kinase 4", "type": "recommended", "evidence": [ { "id": "F1SG49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG49/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "F1SG49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG49/entry#names_and_taxonomy" } ] }, { "name": "Ankyrin repeat domain-containing protein 3", "type": "synonym", "evidence": [ { "id": "F1SG49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG49/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Serine/threonine protein kinase. Required for embryonic skin development and correct skin homeostasis in adults, via phosphorylation of PKP1 and subsequent promotion of keratinocyte differentiation and cell adhesion. It is a direct transcriptional target of TP63. Plays a role in NF-kappa-B activation.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FFY1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFY1#function" }, { "database": "UniProtKB", "id": "ARBA00059729", "url": "https://www.uniprot.org/uniprotkb/ARBA00059729#function" }, { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RIPK4", "url": "https://www.uniprot.org/uniprotkb/F1SG49", "locus": { "chromosome": "13", "start_pos": 205127244, "end_pos": 205153005, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012083", "url": "https://www.ensembl.org/id/ENSSSCG00000012083" } ] } } ], "crossref": [ { "id": "F1SG49", "url": "https://alphafold.ebi.ac.uk/entry/F1SG49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012083", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012083", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14025", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14025", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FFY1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFY1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG49-1", "url": "https://www.uniprot.org/uniprotkb/F1SG49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGESRSPWALGLLRTFDASEFAGWEKVGSGGFGQVYKVRHVHWKTWLAIKCSPSLHVDDRERMELLEEAKKMEMAKFRYVLPVYGICQEPVGLVMEYMETGSLERLLASEPLPWDLRFRIIHETAVGMNFLHCMAPPLLHLDLKPANILLDAHYHVKISDFGLAKCNGLSHAHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSFAIVLWGVLTQKKPFADEKNILHVMVKVVKGHRPELPPICRPRPRACRSLLRLMQRCWHGDPRERPSFQEITSETEDLCEKPDEEVREPAREPDVRSPPEAEAEAPVPAPLKRASAPTFDNDYSLSELLSQLDSGVSQPLQGPEDLSRSSSESKLPSASSGKRLSGVSSVDSAFSSRGSLSLSFEREPSTSELGTSDVQKRKLVDAIVNGDTSRLMKILQPQDVDLVLDGGASLLHLAVEAGQEDCVKWLLLNNANPNLTNRKGSTPLHVAVEKRVRGVVELLLARKISVNATDEDQWTALHFAAQNGDEGSTRLLLEKNASVHEADCEGRTPMHVACQHGQEGVVRILLRRGVDVGLPGKDAWAPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARVLIDLHSDVNMCNLLAQTPLHVAAETGHTSTARLLLHRGAHREAVTAEGCTALHLASRSGHLATVKLLLEEKADLLARGPRSQTALHLAAAGGHSEVVEELVCADVLDLSDEQGLSALHLAAQGRHTKTVETLLRHGAHVNLQSLKFQGGPGPAATLLRRSKT", "length": 785, "header": "tr|F1SG49-1|F1SG49_PIG Isoform 1 of Receptor-interacting serine/threonine-protein kinase 4 OS=Sus scrofa OX=9823 GN=RIPK4 PE=3 SV=2 CANONICAL=F1SG49-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FFY1-1", "url": "https://www.uniprot.org/uniprotkb/F1SG49/entry#A0A8W4FFY1-1", "sequence": { "sequence": "MEGESRSPWALGLLRTFDASEFAGWEKVGSGGFGQVYKVRHVHWKTWLAIKCSPSLHVDDRERMELLEEAKKMEMAKFRYVLPVYGICQEPVGLVMEYMETGSLERLLASEPLPWDLRFRIIHETAVGMNFLHCMAPPLLHLDLKPANILLDAHYHVKISDFGLAKCNGLSHAHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSSDTDASFPCSFAIVLWGVLTQKKPFADEKNILHVMVKVVKGHRPELPPICRPRPRACRSLLRLMQRCWHGDPRERPSFQEITSETEDLCEKPDEEVREPAREPDVRSPPEGEAEAEAEAPVPAPLKRASAPTFDNDYSLSELLSQLDSGVSQPLQGPEDLSRSSSESKLPSASSGKRLSGVSSVDSAFSSRGSLSLSFEREPSTSELGTSDVQKRKLVDAIVNGDTSRLMKILQPQDVDLVLDGGASLLHLAVEAGQEDCVKWLLLNNANPNLTNRKGSTPLHVAVEKRVRGVVELLLARKISVNATDEDQWTALHFAAQNGDEGSTRLLLEKNASVHEADCEGRTPMHVACQHGQEGVVRILLRRGVDVGLPGKDAWAPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARVLIDLHSDVNMCNLLAQTPLHVAAETGHTSTARLLLHRGAHREAVTAEGCTALHLASRSGHLATVKLLLEEKADLLARGPRSQTALHLAAAGGHSEVVEELVCADVLDLSDEQGLSALHLAAQGRHTKTVETLLRHGAHVNLQSLKFQGGPGPAATLLRRSKT", "length": 799, "header": "tr|A0A8W4FFY1-1|F1SG49_PIG Computationally mapped isoform of Receptor-interacting serine/threonine-protein kinase 4 OS=Sus scrofa OX=9823 GN=RIPK4 PE=3 SV=1 CANONICAL=F1SG49-1" }, "locus": { "chromosome": "13", "start_pos": 205152941, "end_pos": 205128504, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093275.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093275.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078329.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078329.1" } ] } }, { "isoform_ac": "F1SG49-1", "url": "https://www.uniprot.org/uniprotkb/F1SG49/entry#F1SG49-1", "sequence": { "sequence": "MEGESRSPWALGLLRTFDASEFAGWEKVGSGGFGQVYKVRHVHWKTWLAIKCSPSLHVDDRERMELLEEAKKMEMAKFRYVLPVYGICQEPVGLVMEYMETGSLERLLASEPLPWDLRFRIIHETAVGMNFLHCMAPPLLHLDLKPANILLDAHYHVKISDFGLAKCNGLSHAHDLSMDGLFGTIAYLPPERIREKSRLFDTKHDVYSFAIVLWGVLTQKKPFADEKNILHVMVKVVKGHRPELPPICRPRPRACRSLLRLMQRCWHGDPRERPSFQEITSETEDLCEKPDEEVREPAREPDVRSPPEAEAEAPVPAPLKRASAPTFDNDYSLSELLSQLDSGVSQPLQGPEDLSRSSSESKLPSASSGKRLSGVSSVDSAFSSRGSLSLSFEREPSTSELGTSDVQKRKLVDAIVNGDTSRLMKILQPQDVDLVLDGGASLLHLAVEAGQEDCVKWLLLNNANPNLTNRKGSTPLHVAVEKRVRGVVELLLARKISVNATDEDQWTALHFAAQNGDEGSTRLLLEKNASVHEADCEGRTPMHVACQHGQEGVVRILLRRGVDVGLPGKDAWAPLHYAAWQGHLPIVKLLAKQPGVSVNAQTLDGRTPLHLAAQRGHYRVARVLIDLHSDVNMCNLLAQTPLHVAAETGHTSTARLLLHRGAHREAVTAEGCTALHLASRSGHLATVKLLLEEKADLLARGPRSQTALHLAAAGGHSEVVEELVCADVLDLSDEQGLSALHLAAQGRHTKTVETLLRHGAHVNLQSLKFQGGPGPAATLLRRSKT", "length": 785, "header": "tr|F1SG49-1|F1SG49_PIG Isoform 1 of Receptor-interacting serine/threonine-protein kinase 4 OS=Sus scrofa OX=9823 GN=RIPK4 PE=3 SV=2 CANONICAL=F1SG49-1" }, "locus": { "chromosome": "13", "start_pos": 205152941, "end_pos": 205128504, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013217.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013217.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012865.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012865.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FFY1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFY1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ], "pmid": "" }, { "name": "protein serine kinase activity", "id": "GO:0106310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106310", "evidence": [ { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ], "pmid": "" }, { "name": "skin development", "id": "GO:0043588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043588", "evidence": [ { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ], "pmid": "" }, { "name": "morphogenesis of an epithelium", "id": "GO:0002009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002009", "evidence": [ { "database": "UniProtKB", "id": "F1SG49", "url": "https://www.uniprot.org/uniprotkb/F1SG49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 466, "end_pos": 468, "annotation": "n_glycosylation_sequon" }, { "start_pos": 499, "end_pos": 501, "annotation": "n_glycosylation_sequon" }, { "start_pos": 528, "end_pos": 530, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG49-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 785, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG49-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG49" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG49" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 286, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 466, "end_pos": 468 }, { "start_pos": 499, "end_pos": 501 }, { "start_pos": 528, "end_pos": 530 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNL8-1", "uniprot_ac": "F1SNL8", "uniprot_id": "F1SNL8_PIG", "mass": { "chemical_mass": 56795.0, "monoisotopic_mass": 56795.0 }, "refseq": {}, "gene_names": [ { "name": "CNDP1", "type": "recommended", "evidence": [ { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" } ] } ], "protein_names": [ { "name": "Carnosine dipeptidase 1", "type": "synonym", "evidence": [ { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNL8", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNDP1", "url": "https://www.uniprot.org/uniprotkb/F1SNL8", "locus": { "chromosome": "1", "start_pos": 149521510, "end_pos": 149562623, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004869", "url": "https://www.ensembl.org/id/ENSSSCG00000004869" } ] } } ], "crossref": [ { "id": "F1SNL8", "url": "https://alphafold.ebi.ac.uk/entry/F1SNL8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004869", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004869", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05676", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05676", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001261", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001261", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051458", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051458", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43270", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43270", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43270:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43270:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01546", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01546", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07687", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07687", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QH09", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH09-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAN5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH94", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FH94-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNL8", "url": "https://www.uniprot.org/uniprotkb/F1SNL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNL8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNL8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPKLGRMVSSVLAFLLLLDWGMFSPPPPPPGLLGKIFQYIDVHQDEFVQTLKEWVAVESDSVQPVPRLRQELLRMMVLAEERLRSLGAHVNAVNMGSQKLPDGQTLPIPPIILAELGNNPEKPTVCFYGHLDVQPARQADGWRTDPYTLTEVDGKLYGRGTTDNKGPVLAWINAVSTFRALDEDLPVNIKFIIEGMEEAGSLALEELVKKEKAGFFSNVDYIVISDNLWISQSKPALTYGTRGNSYFMVEVKCRDQDFHSGTFGGILNEPMADLVALLGSLVDSSGRILIPGIYDHVAPLTEEERKMYEAIDLDLEEYRHSSQMQKFLFDTKEELLMHLWRFPSLSIHGIEGAFDEPGAKTVIPGRVIGKFSIRLVPHMNMSVVEKQVKRHLESTFSKRNSSNQMTISMTLGLHPWIANIRDNQYLAAKRAIKTVFGTEPDMIRDGSTIPIAQIFQATIQKSVMMLPLGAVDDGEHSQNEKINRWNYIEGSKVFAAFFLEVAKLH", "length": 506, "header": "tr|F1SNL8-1|F1SNL8_PIG Isoform 1 of Carnosine dipeptidase 1 OS=Sus scrofa OX=9823 GN=CNDP1 PE=1 SV=4 CANONICAL=F1SNL8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH09-1", "url": "https://www.uniprot.org/uniprotkb/F1SNL8/entry#A0A5G2QH09-1", "sequence": { "sequence": "MDPKLGRMTLKEWVAVESDSVQPVPRLRQELLRMMVLAEERLRSLGAHVNAVNMGSQKLPDGQTLPIPPIILAELGNNPEKPTVCFYGHLDVQPARQADGWRTDPYTLTEVDGKLYGRGTTDNKGPVLAWINAVSTFRALDEDLPVNIKFIIEGMEEAGSLALEELVKKEKAGFFSNVDYIVISDNLWISQSKPALTYGTRGNSYFMVEVKCRDQDFHSGTFGGILNEPMADLVALLGSLVDSSGRILIPGIYDHVAPLTEEERKMYEAIDLDLEEYRHSSQMQKFLFDTKEELLMHLWRFPSLSIHGIEGAFDEPGAKTVIPGRVIGKFSIRLVPHMNMSVVEKQVKRHLESTFSKRNSSNQMTISMTLGLHPWIANIRDNQYLAAKRAIKTVFGTEPDMIRDGSTIPIAQIFQATIQKSVMMLPLGAVDDGEHSQNEKINRWNYIEGSKVFAAFFLEVAKLH", "length": 464, "header": "tr|A0A5G2QH09-1|F1SNL8_PIG Computationally mapped isoform of Carnosine dipeptidase 1 OS=Sus scrofa OX=9823 GN=CNDP1 PE=1 SV=1 CANONICAL=F1SNL8-1" }, "locus": { "chromosome": "1", "start_pos": 149562528, "end_pos": 149525470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086249.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086249.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063609.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063609.1" } ] } }, { "isoform_ac": "A0A5G2RAN5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNL8/entry#A0A5G2RAN5-1", "sequence": { "sequence": "MFSPPPPPPGLLGKIFQYIDVHQDEFVQTLKEWVAVESDSVQPVPRLRQELLRMMVLAEERLRSLGAHVNAVNMGSQKLPDGQTLPIPPIILAELGNNPEKPTVCFYGHLDVQPARQADGWRTDPYTLTEVDGKLYGRGTTDNKGPVLAWINAVSTFRALDEDLPVNIKFIIEGMEEAGSLALEELVKKEKAGFFSNVDYIVISDNLWISQSKPALTYGTRGNSYFMVEVKCRDQDFHSGTFGGILNEPMADLVALLGSLVDSSGRILIPGIYDHVAPLTEEERKMYEAIDLDLEEYRHSSQMQKFLFDTKEELLMHLWRFPSLSIHGIEGAFDEPGAKTVIPGRVIGKFSIRLVPHMNMSVVEKQVKRHLESTFSKRNSSNQMTISMTLGLHPWIANIRDNQYLAAKRAIKTVFGTEPDMIRDGSTIPIAQIFQATIQKSVMMLPLGAVDDGEHSQNEKINRWNYIEGSKVFAAFFLEACCFQLTVLGAATPGQST", "length": 497, "header": "tr|A0A5G2RAN5-1|F1SNL8_PIG Computationally mapped isoform of Carnosine dipeptidase 1 OS=Sus scrofa OX=9823 GN=CNDP1 PE=1 SV=1 CANONICAL=F1SNL8-1" }, "locus": { "chromosome": "1", "start_pos": 149547876, "end_pos": 149522417, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083665.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083665.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067668.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067668.1" } ] } }, { "isoform_ac": "A0A8W4FH94-1", "url": "https://www.uniprot.org/uniprotkb/F1SNL8/entry#A0A8W4FH94-1", "sequence": { "sequence": "MDDPEPGSESKMQLQPTLKEWVAVESDSVQPVPRLRQELLRMMVLAEERLRSLGAHVNAVNMGSQKLPDGQTLPIPPIILAELGNNPEKPTVCFYGHLDVQPARQADGWRTDPYTLTEVDGKLYGRGTTDNKGPVLAWINAVSTFRALDEDLPVNIKFIIEGMEEAGSLALEELVKKEKAGFFSNVDYIVISDNLWISQSKPALTYGTRGNSYFMVEVKCRDQDFHSGTFGGILNEPMADLVALLGSLVDSSGRILIPGIYDHVAPLTEEERKMYEAIDLDLEEYRHSSQMQKFLFDTKEELLMHLWRFPSLSIHGIEGAFDEPGAKTVIPGRVIGKFSIRLVPHMNMSVVEKQVKRHLESTFSKRNSSNQMTISMTLGLHPWIANIRDNQYLAAKRAIKTVFGTEPDMIRDGSTIPIAQIFQATIQKSVMMLPLGAVDDGEHSQNEKINRWNYIEGSKVFAAFFLEVAKLH", "length": 472, "header": "tr|A0A8W4FH94-1|F1SNL8_PIG Computationally mapped isoform of Carnosine dipeptidase 1 OS=Sus scrofa OX=9823 GN=CNDP1 PE=1 SV=1 CANONICAL=F1SNL8-1" }, "locus": { "chromosome": "1", "start_pos": 149544687, "end_pos": 149525470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106811.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106811.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077680.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077680.1" } ] } }, { "isoform_ac": "F1SNL8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNL8/entry#F1SNL8-1", "sequence": { "sequence": "MDPKLGRMVSSVLAFLLLLDWGMFSPPPPPPGLLGKIFQYIDVHQDEFVQTLKEWVAVESDSVQPVPRLRQELLRMMVLAEERLRSLGAHVNAVNMGSQKLPDGQTLPIPPIILAELGNNPEKPTVCFYGHLDVQPARQADGWRTDPYTLTEVDGKLYGRGTTDNKGPVLAWINAVSTFRALDEDLPVNIKFIIEGMEEAGSLALEELVKKEKAGFFSNVDYIVISDNLWISQSKPALTYGTRGNSYFMVEVKCRDQDFHSGTFGGILNEPMADLVALLGSLVDSSGRILIPGIYDHVAPLTEEERKMYEAIDLDLEEYRHSSQMQKFLFDTKEELLMHLWRFPSLSIHGIEGAFDEPGAKTVIPGRVIGKFSIRLVPHMNMSVVEKQVKRHLESTFSKRNSSNQMTISMTLGLHPWIANIRDNQYLAAKRAIKTVFGTEPDMIRDGSTIPIAQIFQATIQKSVMMLPLGAVDDGEHSQNEKINRWNYIEGSKVFAAFFLEVAKLH", "length": 506, "header": "tr|F1SNL8-1|F1SNL8_PIG Isoform 1 of Carnosine dipeptidase 1 OS=Sus scrofa OX=9823 GN=CNDP1 PE=1 SV=4 CANONICAL=F1SNL8-1" }, "locus": { "chromosome": "1", "start_pos": 149562528, "end_pos": 149525470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005375.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005375.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005240.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005240.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FH94", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SNL8", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SNL8", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" } ], "pmid": "" }, { "name": "carboxypeptidase activity", "id": "GO:0004180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004180", "evidence": [ { "database": "UniProtKB", "id": "F1SNL8", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" } ], "pmid": "" }, { "name": "metallodipeptidase activity", "id": "GO:0070573", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070573", "evidence": [ { "database": "UniProtKB", "id": "F1SNL8", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" } ], "pmid": "" }, { "name": "dipeptidase activity", "id": "GO:0016805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016805", "evidence": [ { "database": "UniProtKB", "id": "F1SNL8", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SNL8", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SNL8", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 401, "end_pos": 403, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNL8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 506, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNL8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNL8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" }, { "id": "PF07687", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07687" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M20 dimerisation", "eco_id": "ECO_0000259", "start_pos": 249, "end_pos": 398, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5#function" }, { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 109, "amino_acid": "Ile", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 109, "end_pos": 109, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09#function" }, { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 122, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 122, "end_pos": 122, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94#function" }, { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 130, "amino_acid": "Gly", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 130, "end_pos": 130, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8#function" }, { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 131, "amino_acid": "His", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 131, "end_pos": 131, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5#function" }, { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 142, "amino_acid": "Gly", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 142, "end_pos": 142, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09#function" }, { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 157, "amino_acid": "Leu", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 157, "end_pos": 157, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8#function" }, { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 164, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 164, "end_pos": 164, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94#function" }, { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 165, "amino_acid": "Asn", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 165, "end_pos": 165, "start_aa": "Asn", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5#function" }, { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 177, "amino_acid": "Ser", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 177, "end_pos": 177, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09#function" }, { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 185, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 185, "end_pos": 185, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94#function" }, { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 193, "amino_acid": "Ile", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 193, "end_pos": 193, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8#function" }, { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 199, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 199, "end_pos": 199, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5#function" }, { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 205, "amino_acid": "Leu", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 205, "end_pos": 205, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8#function" }, { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 227, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 227, "end_pos": 227, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09#function" }, { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 435, "amino_acid": "Thr", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 435, "end_pos": 435, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94#function" }, { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 443, "amino_acid": "Met", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 443, "end_pos": 443, "start_aa": "Met", "end_aa": "Met", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5#function" }, { "id": "A0A5G2RAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN5" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 455, "amino_acid": "Ile", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 455, "end_pos": 455, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8#function" }, { "id": "F1SNL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNL8" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 477, "amino_acid": "His", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 477, "end_pos": 477, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09#function" }, { "id": "A0A5G2QH09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH09" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 89, "amino_acid": "Ala", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 89, "end_pos": 89, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94#function" }, { "id": "A0A8W4FH94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FH94" }, { "id": "PIRSR037242-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR037242-3" } ], "binding_site_uniprot": 97, "amino_acid": "Gly", "chebi_lig_id": "CHEBI_29035", "ligand": "Mn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 97, "end_pos": 97, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 381, "end_pos": 383 }, { "start_pos": 401, "end_pos": 403 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMN5-1", "uniprot_ac": "F1SMN5", "uniprot_id": "F1SMN5_PIG", "mass": { "chemical_mass": 290412.0, "monoisotopic_mass": 290412.0 }, "refseq": { "ac": "XP_003134747", "name": "filamin-C isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134747" }, "gene_names": [ { "name": "FLNC", "type": "recommended", "evidence": [ { "id": "F1SMN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" } ] }, { "name": "FLNC", "type": "synonym", "evidence": [ { "id": "XP_003134747", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134747" } ] } ], "protein_names": [ { "name": "Filamin C", "type": "synonym", "evidence": [ { "id": "F1SMN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMN5/entry#names_and_taxonomy" } ] }, { "name": "filamin-C isoform X4", "type": "synonym", "evidence": [ { "id": "XP_003134747", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134747" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMN5", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FLNC", "url": "https://www.uniprot.org/uniprotkb/F1SMN5", "locus": { "chromosome": "18", "start_pos": 19759740, "end_pos": 19787618, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016578", "url": "https://www.ensembl.org/id/ENSSSCG00000016578" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016578", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016578", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00173", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00173", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21310", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21310", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21314", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21314", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518997", "url": "https://www.ncbi.nlm.nih.gov/gene/100518997", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044801", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044801", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518997", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518997", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YPVMAGK", "url": "https://omabrowser.org/oma/group/YPVMAGK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMN5", "url": "https://www.orthodb.org/?gene=F1SMN5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR38537", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38537", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR38537:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR38537:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-446353", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446353", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003134747", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134747", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZRX8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZRX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8C2", "url": "https://www.uniprot.org/uniprotkb/A0A287A8C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8C2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRW9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY64", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY64-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY64-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R269", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R269", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R269-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R269-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK76", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK76-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMN5", "url": "https://www.uniprot.org/uniprotkb/F1SMN5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMN5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMN5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMNNSGYSEAAGLGLGDEVDDMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVRDAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGMQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGADAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDDVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLSPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTVSIGGHGLGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLACDPMPHVEEPSEVLQLHRPSAYPTHWATEEPVVPVESMESMLRPFNLVIPFTVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHVGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2720, "header": "tr|F1SMN5-1|F1SMN5_PIG Isoform 1 of Filamin C OS=Sus scrofa OX=9823 GN=FLNC PE=1 SV=1 CANONICAL=F1SMN5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZRX8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMN5/entry#A0A286ZRX8-1", "sequence": { "sequence": "MMNNSGYSEAAGLGLGDEVDDMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVRDAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGMQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGADAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDDVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLSPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLATEEPVVPVESMESMLRPFNLVIPFTVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGDPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHVGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2685, "header": "tr|A0A286ZRX8-1|F1SMN5_PIG Computationally mapped isoform of Filamin C OS=Sus scrofa OX=9823 GN=FLNC PE=1 SV=2 CANONICAL=F1SMN5-1" }, "locus": { "chromosome": "18", "start_pos": 19787371, "end_pos": 19760455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061392.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061392.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034384.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034384.2" } ] } }, { "isoform_ac": "A0A287A8C2-1", "url": "https://www.uniprot.org/uniprotkb/F1SMN5/entry#A0A287A8C2-1", "sequence": { "sequence": "MMNNSGYSEAAGLGLGDEVDDMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEEPLPPLAPSVPIVHQAKRVVPPCNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVRDAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGMQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGADAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDDVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLSPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTVSIGGHGLGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLATEEPVVPVESMESMLRPFNLVIPFTVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGDPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHVGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2714, "header": "tr|A0A287A8C2-1|F1SMN5_PIG Computationally mapped isoform of Filamin C OS=Sus scrofa OX=9823 GN=FLNC PE=1 SV=2 CANONICAL=F1SMN5-1" }, "locus": { "chromosome": "18", "start_pos": 19787371, "end_pos": 19760455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065009.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065009.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040231.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040231.2" } ] } }, { "isoform_ac": "A0A5G2QRW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SMN5/entry#A0A5G2QRW9-1", "sequence": { "sequence": "MMNNSGYSEAAGLGLGDEVDDMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVNKPLTPPRPRAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEEPLPPLAPSVPIVHQAKRVVPPCNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVRDAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGMQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGADAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDDVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLSPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTVSIGGHGLGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLATEEPVVPVESMESMLRPFNLVIPFTVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHVGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2711, "header": "tr|A0A5G2QRW9-1|F1SMN5_PIG Computationally mapped isoform of Filamin C OS=Sus scrofa OX=9823 GN=FLNC PE=1 SV=1 CANONICAL=F1SMN5-1" }, "locus": { "chromosome": "18", "start_pos": 19787371, "end_pos": 19760455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066741.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066741.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066843.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066843.1" } ] } }, { "isoform_ac": "A0A5G2QY64-1", "url": "https://www.uniprot.org/uniprotkb/F1SMN5/entry#A0A5G2QY64-1", "sequence": { "sequence": "MMNNSGYSEAAGLGLGDEVDDMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVNKPLTPPRPRAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVRDAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGMQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGADAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDDVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLSPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLVRAHCGSRCPKLTADPTPFPPPHTGSPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHVGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2626, "header": "tr|A0A5G2QY64-1|F1SMN5_PIG Computationally mapped isoform of Filamin C OS=Sus scrofa OX=9823 GN=FLNC PE=1 SV=1 CANONICAL=F1SMN5-1" }, "locus": { "chromosome": "18", "start_pos": 19787371, "end_pos": 19760455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083524.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083524.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069823.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069823.1" } ] } }, { "isoform_ac": "A0A5G2R269-1", "url": "https://www.uniprot.org/uniprotkb/F1SMN5/entry#A0A5G2R269-1", "sequence": { "sequence": "MMNNSGYSEAAGLGLGDEVDDMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVRDAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGMQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGADAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDDVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLSPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTVSIGGHGLGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLACDPMPHVEEPSEVLQLHRPSAYPTHWGIEVGVMSLPRNCVCLAGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGDPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHVGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2704, "header": "tr|A0A5G2R269-1|F1SMN5_PIG Computationally mapped isoform of Filamin C OS=Sus scrofa OX=9823 GN=FLNC PE=1 SV=2 CANONICAL=F1SMN5-1" }, "locus": { "chromosome": "18", "start_pos": 19787371, "end_pos": 19760455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071168.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071168.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071286.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071286.2" } ] } }, { "isoform_ac": "A0A8W4FK76-1", "url": "https://www.uniprot.org/uniprotkb/F1SMN5/entry#A0A8W4FK76-1", "sequence": { "sequence": "MMNNSGYSEAAGLGLGDEVDDMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVRDAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGMQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGADAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDDVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLSPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLVSSAAGRGRCPKLTADPTPFPPPHTGSPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHVGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2630, "header": "tr|A0A8W4FK76-1|F1SMN5_PIG Computationally mapped isoform of Filamin C OS=Sus scrofa OX=9823 GN=FLNC PE=1 SV=1 CANONICAL=F1SMN5-1" }, "locus": { "chromosome": "18", "start_pos": 19787371, "end_pos": 19760455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099962.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099962.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078710.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078710.1" } ] } }, { "isoform_ac": "F1SMN5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMN5/entry#F1SMN5-1", "sequence": { "sequence": "MMNNSGYSEAAGLGLGDEVDDMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVRDAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGMQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGADAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDDVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLSPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTVSIGGHGLGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLACDPMPHVEEPSEVLQLHRPSAYPTHWATEEPVVPVESMESMLRPFNLVIPFTVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHVGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2720, "header": "tr|F1SMN5-1|F1SMN5_PIG Isoform 1 of Filamin C OS=Sus scrofa OX=9823 GN=FLNC PE=1 SV=1 CANONICAL=F1SMN5-1" }, "locus": { "chromosome": "18", "start_pos": 19787371, "end_pos": 19760455, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018048.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018048.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017562.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017562.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FK76", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK76" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518997", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518997", "resource": "KEGG Pathway" }, { "id": "R-SSC-446353", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446353", "resource": "Reactome", "description": "Cell-extracellular matrix interactions" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LU35-1", "protein_name": "Filamin C", "gene_name": "FLNC", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMNNSGYSEAPGFGLGDEVDDMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGIGEVLVYIEDPEGHTEEAKVVPNNDKNRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPRGTEEPVKVREAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGIQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIVSWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGAETQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGAHLVEVLYDDVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLGPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTVSIGGHGLGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLATEEPVVPAEPMESMLRPFNLVIPFTVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGHTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2693 }, "evidence": [ { "id": "F1SMN5", "url": "https://omabrowser.org/oma/group/F1SMN5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8M9PHR9-1", "protein_name": "Filamin-C isoform X1", "gene_name": "flncb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSNNTYYDQQLPPQYYQGTDNGEDGDEEMPATEKDLAEDAPWKKIQQNTFTRWCNEHLKCLNRKILDLQKDLTDGLKLIGLLEVLSQKKMYRKYHARPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKLTPKQRLLGWIQNKVPQLHINNFHRDWRDGKALGALVDNCAPGLCPDWETWDPSQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPLRPKTLHPKRAKAYGPGIEPRGNVVLKPAEFVVETVEAGLGEVLVYIEDPEGHTEEARVIPNNDRNRSYSVVYVPKVEGLHKVKVLFAGQDIDRSPFLVNVSKALGDPNKVQARGPGLEPVGNVANKPTYFDIYTAGAGAGDVGVIIVDSQGRRDTVEIILENKGDSVFRCTYGPILEGPHTIYVTFAGQQIPRSPFTVHISEAPPHGRQIGSPVHIIPQSLRTPPSEKAKKVPPPTPPKPRRPTSNPNACRAIGRGLQPKGVRVKEVADFKVYTKGAGSGELRVHVKGPTGGDEPVKVEDLGDGVYECDYYPIFCGKYIITVTWGGHAIPRSPFEVIISEDAGPQKVRAWGPGLETGMVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVLYWPTEPGDYAVHVICDDEDIKDSPFMAHILPAASDVFPEKVKCYGPGLEPTGCIVNKPAEFTIDARGAGRGQLQIYAQDSEGFPINIQITDNGDSTYFCVYIPIKPIKHTIIITWGEVNVPNSPFRVTIGEGSHPENVKVHGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFADQEIPISPFRIKVDPSHDANKVKAEGPGLNKTGVEVGKPTHFTIYTKGAGKATPEVHFTASGRGDAVSDFEIIDNHDYSFTVRYTALQQGNMTISVCHGGDPIPKSPFTISVAPPLDLNKVKVHGLNNKVDVGKDEEFTVNTRGAGGQGKVDVKITSPSRRPIPCKVESGASNEVHTVKYIPPEEGPYKVDISYDGNPVPGSPFTVEGVMPPDPSKVRAYGPGLKGGIVGKPAPFAIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCSVSYLPTEPGEYSINILFADAHIPGSPFKAMVQSVFDPSKVTASGPGLERGKVNEAGSFTVDCSKAGEAELTIEIISDSGAQAEVHVQNNSDGTYSITYIPPFHGMYTITIKYGGHAVPKFPARVQVDPALDTSGIKVYGPGVEPRGVLREVTTHFIVDTRVHNKMGGNHIKVRIVNPSGANTDAYVTDKADGTYRVEYTAYEDGVHLIEVLYDDVPVPKSPFRVAVAEGCDPSRVRAYGPGLEEGLVNKPNRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCSVEYIPFTPGEYDVNITFGGLPIPGSPFRVPVRELVDPSKVKCTGPGLGSGVRAHVPQTFTVDCSKAGLAPLEVLLYGPTGMTEPVNITDNGDGTHTVVYTPAKDGPYTVCVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGVPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNRDGTYTVSYVPDMTGRYTITIKYGGDEIPYSPYRIHALPSGDASKCLVTVSIGGHGLGSGLGPTIQIGEETVITVDAKAAGKGKVTCKVSTPDGAELDVDVVENADGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVVASDTIPIIEEPCDKLQLQQPYAPYQGYSPHWATEEPVTAVDIIEPVLRPFNLVIPFTVQKGEITGEVHMPSGKTASPHITDNKDGTVTVKYAPTEKGLHEMDIKYDGNHIPGSPLQFYVDAINSGHVNAYGPGLSHGMVNKSATFTIVTKDAGEGGLSLAVEGPSKAEISCKDNKDGTCTVSYLPTAPGDYNIIVKFDDKHIAGSPFTAKITGDDSMRTSQLNVGTATDVSLKITETDLSSLSATIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVKKNGKHVTNSPFKIMVGQSEIGDASKVKVSGKGLIEGHTFEVAEFIVDTRSAGYGGLGLSIEGPSKVDINCSDVDDGTCKVTYCPTEPGTYIINIKFADQHVPGSPFTVKVLGEGRMKESITRKRQAPSIATVGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRAGETKREVRVEESTQVGGDPFRDVFGGFMGRESLGPFNSPQGRQSEGESGTQEMTAQVTSPSGNTEDAEIIEGEDSTYSVRFVPHEMGPHTVNVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLDRGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEISFEDRKDGSCGVAYIVQEPGDYEVSIKFNDEHIPDSPFIVPIASLSDDARLLTVTSLQEMGLKVNQEASFAVQLNGARGAIDAKVHTPSGAVEECYITELDNDKHAIRFIPRENGVHSIDVRFNGSHIPGSPFKIRVGEPGQAGDPGMVTAFGPGLEGGTTGVPSDFIVNTCNAGSGALSVTIDGPSKVKMDCQECPEGYKVTYTPMAPGSYLISIKYGGPQHIVGSPFKAKVSGARLSGGHSLHETSSVLVETVTKSSSVAGSFSTLPKFSSDASKVVSRGAGLSKAFIGQKNTFTVDCSKAGTNMLMVGVHGPKTPCEEVYVKHMGNRMYNVTYTVKEKGDYILIVKWGEEMVPGSPFHVTVP", "length": 2773 }, "evidence": [ { "id": "F1SMN5", "url": "https://omabrowser.org/oma/group/F1SMN5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZHA0-1", "protein_name": "Filamin-C", "gene_name": "Flnc", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMNNSNYSDASGLGLLDEADEMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVQNAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDNTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVREAGDGVFECEYYPVIPGKYVVTITWGGYAIPRSPFEVQVSPEAGAQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDRGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDRPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTVIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGHYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLSRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGEEQAFLVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGSGAEAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIQPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPIPKFPTRVHVQPAVDTSGIKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDEVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYVPFTPGDYDVNITFGGQPIPGSPFRVPVKDVVDPGKVKCSGPGLGTGVRARVPQTFTVDCSQAGRAPLQVAVLGPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTVSIGGHGLGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLACDPLPHVEEPAEVLQLHQPYAPLRPGTCPTHWATEEPVVPVEPLESMLRPFNLVIPFTVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFYVDAINSGHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITEGDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVAVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTQNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGASYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2726 }, "evidence": [ { "id": "F1SMN5", "url": "https://omabrowser.org/oma/group/F1SMN5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q14315-1", "protein_name": "Filamin-C", "gene_name": "FLNC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMNNSGYSDAGLGLGDETDEMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVENAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDSTFRCTYRPAMEGPHTVHVAFAGAPITRSPFPVHVSEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVREAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGVQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHILPAPPDCFPDKVKAFGPGLEPTGCIVDKPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIISWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPAEADIDFDIIKNDNDTFTVKYTPPGAGRYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLNRTGVEVGKPTHFTVLTKGAGKAKLDVQFAGTAKGEVVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKIKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGAEAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIRPVFDPSKVRASGPGLERGKVGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIHNNADGTYHITYSPAFPGTYTITIKYGGHPVPKFPTRVHVQPAVDTSGVKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDEVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGRPIPGSPFRVPVKDVVDPGKVKCSGPGLGAGVRARVPQTFTVDCSQAGRAPLQVAVLGPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTVSIGGHGLGACLGPRIQIGQETVITVDAKAAGEGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLACDPLPHEEEPSEVPQLRQPYAPPRPGARPTHWATEEPVVPVEPMESMLRPFNLVIPFAVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITESDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGHTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKVEAAEIVEGEDSAYSVRFVPQEMGPHTVAVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGSSYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVKVP", "length": 2725 }, "evidence": [ { "id": "F1SMN5", "url": "https://omabrowser.org/oma/group/F1SMN5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VHX6-1", "protein_name": "Filamin-C", "gene_name": "Flnc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMNNSNYSDASGLGLVDEADEMPSTEKDLAEDAPWKKIQQNTFTRWCNEHLKCVGKRLTDLQRDLSDGLRLIALLEVLSQKRMYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPGLCPDWEAWDPNQPVQNAREAMQQADDWLGVPQVIAPEEIVDPNVDEHSVMTYLSQFPKAKLKPGAPVRSKQLNPKKAIAYGPGIEPQGNTVLQPAHFTVQTVDAGVGEVLVYIEDPEGHTEEAKVVPNNDKDRTYAVSYVPKVAGLHKVTVLFAGQNIERSPFEVNVGMALGDANKVSARGPGLEPVGNVANKPTYFDIYTAGAGTGDVAVVIVDPQGRRDTVEVALEDKGDNTFRCTYRPVMEGPHTVHVAFAGAPITRSPFPVHVAEACNPNACRASGRGLQPKGVRVKEVADFKVFTKGAGSGELKVTVKGPKGTEEPVKVREAGDGVFECEYYPVVPGKYVVTITWGGYAIPRSPFEVQVSPEAGAQKVRAWGPGLETGQVGKSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGEYAVHVICDDEDIRDSPFIAHIQPAPPDCFPDKVKAFGPGLEPTGCIVDRPAEFTIDARAAGKGDLKLYAQDADGCPIDIKVIPNGDGTFRCSYVPTKPIKHTIIVSWGGVNVPKSPFRVNVGEGSHPERVKVYGPGVEKTGLKANEPTYFTVDCSEAGQGDVSIGIKCAPGVVGPVEADIDFDIIKNDNDTFTVKYTPPGAGHYTIMVLFANQEIPASPFHIKVDPSHDASKVKAEGPGLSRTGVEVGKPTHFTVLTKGAGKAKLDVHFAGAAKGEAVRDFEIIDNHDYSYTVKYTAVQQGNMAVTVTYGGDPVPKSPFVVNVAPPLDLSKVKVQGLNSKVAVGQEQAFSVNTRGAGGQGQLDVRMTSPSRRPIPCKLEPGGGAEAQAVRYMPPEEGPYKVDITYDGHPVPGSPFAVEGVLPPDPSKVCAYGPGLKGGLVGTPAPFSIDTKGAGTGGLGLTVEGPCEAKIECQDNGDGSCAVSYLPTEPGEYTINILFAEAHIPGSPFKATIQPVFDPSKVRASGPGLERGKAGEAATFTVDCSEAGEAELTIEILSDAGVKAEVLIQNNADGTYHITYSPAFPGTYTITIKYGGHPIPKFPTRVHVQPAVDTSGIKVSGPGVEPHGVLREVTTEFTVDARSLTATGGNHVTARVLNPSGAKTDTYVTDNGDGTYRVQYTAYEEGVHLVEVLYDEVAVPKSPFRVGVTEGCDPTRVRAFGPGLEGGLVNKANRFTVETRGAGTGGLGLAIEGPSEAKMSCKDNKDGSCTVEYIPFTPGDYDVNITFGGQPIPGSPFRVPVKDVVDPGKVKCSGPGLGTGVRARVPQTFTVDCSQAGRAPLQVAVLGPTGVAEPVEVRDNGDGTHTVHYTPATDGPYTVAVKYADQEVPRSPFKIKVLPSHDASKVRASGPGLNASGIPASLPVEFTIDARDAGQGLLTVQILDPEGKPKKANIRDNGDGTYTVSYLPDMSGRYTITIKYGGDEIPYSPFRIHALPTGDASKCLVTVSIGGHGLGACLGPRIQIGEETVITVDAKAAGKGKVTCTVSTPDGAELDVDVVENHDGTFDIYYTAPEPGKYVITIRFGGEHIPNSPFHVLACDPLPHVEEPAEMLQMRQPYAPLRPGTCPTHWATEEPVVPVEPLESMLRPFNLVIPFTVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGLHQMGIKYDGNHIPGSPLQFYVDAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDKHIPGSPFTAKITGDDSMRTSQLNVGTSTDVSLKITEGDLSQLTASIRAPSGNEEPCLLKRLPNRHIGISFTPKEVGEHVVSVRKSGKHVTNSPFKILVGPSEIGDASKVRVWGKGLSEGQTFQVAEFIVDTRNAGYGGLGLSIEGPSKVDINCEDMEDGTCKVTYCPTEPGTYIINIKFADKHVPGSPFTVKVTGEGRMKESITRRRQAPSIATIGSTCDLNLKIPGNWFQMVSAQERLTRTFTRSSHTYTRTERTEISKTRGGETKREVRVEESTQVGGDPFPAVFGDFLGRERLGSFGSITRQQEGEASSQDMTAQVTSPSGKTEAAEIVEGEDSAYSVRFVPQEMGPHTVTVKYRGQHVPGSPFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSKAEIAFEDRKDGSCGVSYVVQEPGDYEVSIKFNDEHIPDSPFVVPVASLSDDARRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGAHIPGSPFKIRVGEQSQAGDPGLVSAYGPGLEGGTTGVSSEFIVNTQNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGSPFKAKVTGPRLSGGHSLHETSTVLVETVTKSSSSRGASYSSIPKFSSDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKWGDESVPGSPFKVNVP", "length": 2726 }, "evidence": [ { "id": "F1SMN5", "url": "https://omabrowser.org/oma/group/F1SMN5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SMN5", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SMN5", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" } ], "pmid": "" }, { "name": "sarcolemma", "id": "GO:0042383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042383", "evidence": [ { "database": "UniProtKB", "id": "F1SMN5", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SMN5", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" } ], "pmid": "" }, { "name": "ankyrin binding", "id": "GO:0030506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030506", "evidence": [ { "database": "UniProtKB", "id": "F1SMN5", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "F1SMN5", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" } ], "pmid": "" }, { "name": "sarcomere organization", "id": "GO:0045214", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045214", "evidence": [ { "database": "UniProtKB", "id": "F1SMN5", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1421, "end_pos": 1423, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1551, "end_pos": 1553, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1808, "end_pos": 1810, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2688, "end_pos": 2690, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 827, "end_pos": 829, "annotation": "n_glycosylation_sequon" }, { "start_pos": 879, "end_pos": 881, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMN5" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 143, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 1421, "end_pos": 1423 }, { "start_pos": 1551, "end_pos": 1553 }, { "start_pos": 1808, "end_pos": 1810 }, { "start_pos": 2688, "end_pos": 2690 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 827, "end_pos": 829 }, { "start_pos": 879, "end_pos": 881 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 4 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "exact_o_linked_glycan_sites", "count": 4 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 4 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 1 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "exact_o_linked_glycan_sites", "count": 4 }, { "field": "exact_o_linked_glycans", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 20 }, { "field": "total_sites", "count": 18 } ], "sort_fields": [ "start_pos", "end_pos", "kinase_uniprot_canonical_ac", "kinase_gene_name", "residue", "comment", "site_lbl" ] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 1278 }, { "field": "total_sites", "count": 1020 } ], "sort_fields": [ "start_pos", "end_pos", "subjects_tested", "subjects_positive", "frequency", "sequence_org", "sequence_mut", "comment", "chr_id", "chr_pos", "ref_nt", "alt_nt", "minor_allelic_frequency", "site_lbl" ] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 1260 }, { "field": "total_sites", "count": 1010 } ], "sort_fields": [ "start_pos", "end_pos", "subjects_tested", "subjects_positive", "frequency", "sequence_org", "sequence_mut", "comment", "chr_id", "chr_pos", "ref_nt", "alt_nt", "minor_allelic_frequency", "site_lbl" ] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 18 }, { "field": "total_sites", "count": 17 } ], "sort_fields": [ "start_pos", "end_pos", "subjects_tested", "subjects_positive", "frequency", "sequence_org", "sequence_mut", "comment", "chr_id", "chr_pos", "ref_nt", "alt_nt", "minor_allelic_frequency", "site_lbl" ] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFG8-1", "uniprot_ac": "F1SFG8", "uniprot_id": "F1SFG8_PIG", "mass": { "chemical_mass": 133895.0, "monoisotopic_mass": 133895.0 }, "refseq": {}, "gene_names": [ { "name": "ATP13A4", "type": "recommended", "evidence": [ { "id": "F1SFG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ] } ], "protein_names": [ { "name": "Cation-transporting ATPase", "type": "recommended", "evidence": [ { "id": "F1SFG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFG8/entry#names_and_taxonomy" } ] }, { "name": "7.2.2.-", "type": "synonym", "evidence": [ { "id": "F1SFG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFG8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATP13A4", "url": "https://www.uniprot.org/uniprotkb/F1SFG8", "locus": { "chromosome": "13", "start_pos": 130440564, "end_pos": 130589857, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011821", "url": "https://www.ensembl.org/id/ENSSSCG00000011821" } ] } } ], "crossref": [ { "id": "F1SFG8", "url": "https://alphafold.ebi.ac.uk/entry/F1SFG8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011821", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011821", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07542", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07542", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006544", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006544", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008250", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008250", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018303", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018303", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047819", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047819", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45630", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45630", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45630:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45630:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00122", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00122", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12409", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12409", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-936837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-936837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FL30", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FL30-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFG8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDHFEKGQHALLNEGEENEMEIFGYRTQSCRKTLCLAGYVFSFGILPLVFYWRPAWHVWANCIPCSLQEADVVLLRTTDEFQTYSRKKVAWICLSALNSTFRLTPDHPLITDEEYIINRAIRKPDLKVRCIKVQKIRYVWNNLEGQFQKIGSLEDWLSSAKIHLKFGSGLTTEEQEIRRLICGPNTIDVEITPVWKLLIKEVLNPFYIFQLFSVCLWFSEDYKEYAFAIIIMSIISIALTVYDLREQSVKLHHLVESHNNITVSVCGKTAGVQELESRFLVPGDLLILTGNKVQMPCDAILIDGHCVVDEGMLTGESIPVTKTPLPEMNSSVPWKTQSEADYKRHVLFCGTEVIQAKGACSGTVKAVVLQTRFNTAKGDLVRSILYPKPMNFKLYRDAIRFLLCLVGTATIGMIYTLCVYVLSGEPPEEVVKKALDVITIAVPPALPAALTTGIIYAQRRLKKRGIFCISPQRINVCGQLNLVCFDKTGTLTRDGLDLWGVMPCGRNGFQEVHSFASGKALPWGPLCAAMASCHSLILLDGTIQGDPLDLKMFEATTWEMATSEDDFHIKGAPACAMVVKPCKTASQVPVEGIAILHQFPFSSALQRMTVIVQEMGGDRLAFMKGAPERVASFCQPETVPTSFVSELQVYTTQGFRVIGLAYKKLEMDHHTTALMRDQVESDLIFLGLLILENRLKEETKPVLEELISARIRTVMITGDNLQTAITVARKSGMVSESQKVILIEANEPTGSSSASISWKLVEEKKHIVYKNQDTYINIREVVSDSSREGSYHFALSGKSFQVINQHFSSLLPKILINGIFARMSPGQKSSLVEEFQKLDYFVGMCGDGANDCGALKMAHVGISLSEQEASVASPFTSKTPNIECVPHLIKEGRAALVTSFCMFKYMALYSMIQYVGVLLLYWETNSLSNYQFLFQDLAITTLIGVTMNLNGAYPKLVPFRPAGRLISPPLLLSVILNILLSLAMHIVGFILVQRQPWYSVGMHSACTVQNETLPKLTISPTAPEKTGSNGVFTSFENTTTWFLGTINCIIVALVFSKGKPFRQPTYKNYIFVLVLLIQLSVCLFILFADIPELYRRLDLLCTPVLWRVYIVIMLSSNFIVSLVVEEAIIENRALWMIIKKCFGYQSKSQYRIWQRALANDPSWPPINQTSYSDMSGYGPGVSYSNPVFESNEDQL", "length": 1196, "header": "tr|F1SFG8-1|F1SFG8_PIG Isoform 1 of Cation-transporting ATPase OS=Sus scrofa OX=9823 GN=ATP13A4 PE=3 SV=5 CANONICAL=F1SFG8-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FL30-1", "url": "https://www.uniprot.org/uniprotkb/F1SFG8/entry#A0A8W4FL30-1", "sequence": { "sequence": "MGDHFEKGQHALLNEGEENEMEIFGYRTQSCRKTLCLAGYVFSFGILPLVFYWRPAWHVWANCIPCSLQEADVVLLRTTDEFQTYSRKKVAWICLSALNSTFRLTPDHPLITDEEYIINRAIRKPDLKVRCIKVQKIRYVWNNLEGQFQKIGSLEDWLSSAKIHLKFGSGLTTEEQEIRRLICGPNTIDVEITPVWKLLIKEVLNPFYIFQLFSVCLWFSEDYKEYAFAIIIMSIISIALTVYDLREQSVKLHHLVESHNNITVSVCGKTAGVQELESRFLVPGDLLILTGNKVQMPCDAILIDGHCVVDEGMLTGESIPVTKTPLPEMNSSVPWKTQSEADYKRHVLFCGTEVIQAKGACSGTVKAVVLQTRFNTAKGDLVRSILYPKPMNFKLYRDAIRFLLCLVGTATIGMIYTLCVYVLSGEPPEEVVKKALDVITIAVPPALPAALTTGIIYAQRRLKKRGIFCISPQRINVCGQLNLVCFDKTGTLTRDGLDLWGVMPCGRNGFQEVHSFASGKALPWGPLCAAMASCHSLILLDGTIQGDPLDLKMFEATTWVSLSPKILRSFFKATPTQ", "length": 577, "header": "tr|A0A8W4FL30-1|F1SFG8_PIG Computationally mapped isoform of Cation-transporting ATPase OS=Sus scrofa OX=9823 GN=ATP13A4 PE=3 SV=1 CANONICAL=F1SFG8-1" }, "locus": { "chromosome": "13", "start_pos": 130589687, "end_pos": 130492548, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092744.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092744.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080181.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080181.1" } ] } }, { "isoform_ac": "F1SFG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFG8/entry#F1SFG8-1", "sequence": { "sequence": "MGDHFEKGQHALLNEGEENEMEIFGYRTQSCRKTLCLAGYVFSFGILPLVFYWRPAWHVWANCIPCSLQEADVVLLRTTDEFQTYSRKKVAWICLSALNSTFRLTPDHPLITDEEYIINRAIRKPDLKVRCIKVQKIRYVWNNLEGQFQKIGSLEDWLSSAKIHLKFGSGLTTEEQEIRRLICGPNTIDVEITPVWKLLIKEVLNPFYIFQLFSVCLWFSEDYKEYAFAIIIMSIISIALTVYDLREQSVKLHHLVESHNNITVSVCGKTAGVQELESRFLVPGDLLILTGNKVQMPCDAILIDGHCVVDEGMLTGESIPVTKTPLPEMNSSVPWKTQSEADYKRHVLFCGTEVIQAKGACSGTVKAVVLQTRFNTAKGDLVRSILYPKPMNFKLYRDAIRFLLCLVGTATIGMIYTLCVYVLSGEPPEEVVKKALDVITIAVPPALPAALTTGIIYAQRRLKKRGIFCISPQRINVCGQLNLVCFDKTGTLTRDGLDLWGVMPCGRNGFQEVHSFASGKALPWGPLCAAMASCHSLILLDGTIQGDPLDLKMFEATTWEMATSEDDFHIKGAPACAMVVKPCKTASQVPVEGIAILHQFPFSSALQRMTVIVQEMGGDRLAFMKGAPERVASFCQPETVPTSFVSELQVYTTQGFRVIGLAYKKLEMDHHTTALMRDQVESDLIFLGLLILENRLKEETKPVLEELISARIRTVMITGDNLQTAITVARKSGMVSESQKVILIEANEPTGSSSASISWKLVEEKKHIVYKNQDTYINIREVVSDSSREGSYHFALSGKSFQVINQHFSSLLPKILINGIFARMSPGQKSSLVEEFQKLDYFVGMCGDGANDCGALKMAHVGISLSEQEASVASPFTSKTPNIECVPHLIKEGRAALVTSFCMFKYMALYSMIQYVGVLLLYWETNSLSNYQFLFQDLAITTLIGVTMNLNGAYPKLVPFRPAGRLISPPLLLSVILNILLSLAMHIVGFILVQRQPWYSVGMHSACTVQNETLPKLTISPTAPEKTGSNGVFTSFENTTTWFLGTINCIIVALVFSKGKPFRQPTYKNYIFVLVLLIQLSVCLFILFADIPELYRRLDLLCTPVLWRVYIVIMLSSNFIVSLVVEEAIIENRALWMIIKKCFGYQSKSQYRIWQRALANDPSWPPINQTSYSDMSGYGPGVSYSNPVFESNEDQL", "length": 1196, "header": "tr|F1SFG8-1|F1SFG8_PIG Isoform 1 of Cation-transporting ATPase OS=Sus scrofa OX=9823 GN=ATP13A4 PE=3 SV=5 CANONICAL=F1SFG8-1" }, "locus": { "chromosome": "13", "start_pos": 130589687, "end_pos": 130440722, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012933.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012933.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012592.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012592.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1022, "start_aa": "Thr", "end_pos": 1022, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1022", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FL30", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL30" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-936837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-936837", "resource": "Reactome", "description": "Ion transport by P-type ATPases" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" }, { "name": "ATPase-coupled monoatomic cation transmembrane transporter activity", "id": "GO:0019829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019829", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" }, { "name": "P-type transmembrane transporter activity", "id": "GO:0140358", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140358", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" }, { "name": "P-type ion transporter activity", "id": "GO:0015662", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015662", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" }, { "name": "polyamine transmembrane transporter activity", "id": "GO:0015203", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015203", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" }, { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular calcium ion homeostasis", "id": "GO:0006874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006874", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" }, { "name": "polyamine transmembrane transport", "id": "GO:1902047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902047", "evidence": [ { "database": "UniProtKB", "id": "F1SFG8", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1011, "end_pos": 1013, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1038, "end_pos": 1040, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1168, "end_pos": 1170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] }, { "id": "R-SSC-5251989", "name": "ATP13A4,5 transport divalent ions from extracellular region to cytosol", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, extracellular region, plasma membrane", "input_participant_list": [ "R-ALL-5252122" ], "output_participant_list": [ "R-ALL-5252016" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5251989", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5251989" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-5252016", "participant_name": "divalent metal cation [cytosol]", "crossref": [ { "id": "60240", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-5252122", "participant_name": "divalent metal cation [extracellular region]", "crossref": [ { "id": "60240", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFG8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1196, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFG8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFG8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFG8" }, { "id": "SM00831", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00831" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cation-transporting P-type ATPase N-terminal", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 223, "start_aa": "Glu", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1022 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1011, "end_pos": 1013 }, { "start_pos": 1038, "end_pos": 1040 }, { "start_pos": 1168, "end_pos": 1170 }, { "start_pos": 261, "end_pos": 263 }, { "start_pos": 330, "end_pos": 332 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGH0-1", "uniprot_ac": "F1SGH0", "uniprot_id": "F1SGH0_PIG", "mass": { "chemical_mass": 162570.0, "monoisotopic_mass": 162570.0 }, "refseq": {}, "gene_names": [ { "name": "PTPRG", "type": "recommended", "evidence": [ { "id": "F1SGH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" } ] } ], "protein_names": [ { "name": "Receptor-type tyrosine-protein phosphatase gamma", "type": "recommended", "evidence": [ { "id": "F1SGH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH0/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.48", "type": "synonym", "evidence": [ { "id": "F1SGH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Possesses tyrosine phosphatase activity.", "evidence": [ { "database": "UniProtKB", "id": "F1SGH0", "url": "https://www.uniprot.org/uniprotkb/F1SGH0#function" }, { "database": "UniProtKB", "id": "ARBA00053746", "url": "https://www.uniprot.org/uniprotkb/ARBA00053746#function" }, { "database": "UniProtKB", "id": "A0A287BL66", "url": "https://www.uniprot.org/uniprotkb/A0A287BL66#function" }, { "database": "UniProtKB", "id": "A0A8W4FPS4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPS4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGH0", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTPRG", "url": "https://www.uniprot.org/uniprotkb/F1SGH0", "locus": { "chromosome": "13", "start_pos": 43886214, "end_pos": 43548770, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011485", "url": "https://www.ensembl.org/id/ENSSSCG00000011485" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011485", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011485", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03122", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03122", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17667", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17667", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17670", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17670", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000242", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000242", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036398", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036398", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050348", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050348", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19134:SF468", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19134:SF468", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00102", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00102", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00194", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00194", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "10684", "url": "https://www.rhea-db.org/rhea/10684", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BL66", "url": "https://www.uniprot.org/uniprotkb/A0A287BL66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BL66-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BL66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RH05", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RH05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RH05-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RH05-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPS4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGH0", "url": "https://www.uniprot.org/uniprotkb/F1SGH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGH0-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVAPFFMEPLFISTVSCIRFRVMGKSMANECLVGFGHRGGPVGKYTLEDAVLDFPMFYSFHLLEPSGLRSYFLLTGAYGPEHWVTSSVSCGGRHQSPIDILDQHARVGEEYQELQLDGFDVESSNKTWMKNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENREIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPSSLSSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVKSVEYLRNNFRPQQGLYDRVVSKSAVHDAWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSKPETIYHPPIMNYIISYSWTKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGSSTWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFSGGGISSFPSTVWPTRLPTAASASKQAVRPVLATTEALAAPSPDGDAAPTKDSEGAEEGEKDEKSESEDGEREHEEEGEKDSEKKERSGVTHAARARNPTEPTPAPSAPGTAAQEGGHQTIAGRQRDHAASPTARPEEAQDPRPVTSTQVPPTVTEEHEEKSDPKKPITPSKKPVYRGDRFSEDSKFITVNPAEKNTSGMMSRSSPGRMEWIIPLIVVSALTFVCLILLIAVLVYWRGCNKIKSKGFPRRFREVPSSGERGEKGSRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPDNKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKVHACYTIRRFSVRNTKVKKGQKGNPKGRQNERMVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARTPEMGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEFVYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSTFELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFVYKAMLSLVSTKENGNGPMTVDKNGAVLIADESDPAESMESLV", "length": 1452, "header": "tr|F1SGH0-1|F1SGH0_PIG Isoform 1 of Receptor-type tyrosine-protein phosphatase gamma OS=Sus scrofa OX=9823 GN=PTPRG PE=1 SV=4 CANONICAL=F1SGH0-1" }, "isoforms": [ { "isoform_ac": "A0A287BL66-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH0/entry#A0A287BL66-1", "sequence": { "sequence": "MVAPFFMEPLFISTVSCIRFRVMGKSMANECLVGFGHRGGPVGKYTLEDAVLDFPMFYSFHLLEPSGLRSYFLLTGAYGPEHWVTSSVSCGGRHQSPIDILDQHARVGEEYQELQLDGFDVESSNKTWMKNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENREIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPSSLSSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVKSVEYLRNNFRPQQGLYDRVVSKSAVHDAWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSKPETIYHPPIMNYIISYSWTKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGSSTWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFSGGGISSFPSTVWPTRLPTAASASKQAVRPVLATTEALAAPSPDGDAAPTKDSEGAEEGEKDEKSESEDGEREHEEEGEKDSEKKERSGVTHAARARNPTEPTPAPSAPGTAAQEGGHQTIAGRQRDHAASPTARPEEAQDPRPVTSTQVPPTVTEEHEEKSDPKKPITPSKKPVYRGDRFSEDSKFITVNPAEKNTSGMMSRSSPGRMEWIIPLIVVSALTFVCLILLIAVLVYWRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPDNKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKVHACYTIRRFSVRNTKVKKGQKGNPKGRQNERMVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARTPEMGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEFVYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSTFELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFVYKAMLSLVSTKENGNGPMTVDKNGAVLIADESDPAESMESLV", "length": 1423, "header": "tr|A0A287BL66-1|F1SGH0_PIG Computationally mapped isoform of Receptor-type tyrosine-protein phosphatase gamma OS=Sus scrofa OX=9823 GN=PTPRG PE=1 SV=2 CANONICAL=F1SGH0-1" }, "locus": { "chromosome": "13", "start_pos": 43865423, "end_pos": 43548770, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042778.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042778.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056910.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056910.2" } ] } }, { "isoform_ac": "A0A5G2RH05-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH0/entry#A0A5G2RH05-1", "sequence": { "sequence": "QRNTSFVSIAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENREIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPSSLSSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVKSVEYLRNNFRPQQGLYDRVVSKSAVHDAWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSKPETIYHPPIMNYIISYSWTKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGSSTWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFSGGGISSFPSTVWPTRLPTAASASKQAVRPVLATTEALAAPSPDGDAAPTKDSEGAEEGEKDEKSESEDGEREHEEEGEKDSEKKERSGVTHAARARNPTEPTPAPSAPGTAAQEGGHQTIAGRQRDHAASPTARPEEAQDPRPVTSTQVPPTVTEEHEEKSDPKKPITPSKKPVYRGDRFSEDSKFITVNPAEKNTSGMMSRSSPGRMEWIIPLIVVSALTFVCLILLIAVLVYWRGCNKIKSKGFPRRFREVPSSGERGEKGSRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPDNKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKVHACYTIRRFSVRNTKVKKGQKGNPKGRQNERMVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARTPEMGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEFVYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSTFELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFVYKAMLSLVSTKENGNGPMTVDKNGAVLIADESDPAESMESLV", "length": 1325, "header": "tr|A0A5G2RH05-1|F1SGH0_PIG Computationally mapped isoform of Receptor-type tyrosine-protein phosphatase gamma OS=Sus scrofa OX=9823 GN=PTPRG PE=1 SV=1 CANONICAL=F1SGH0-1" }, "locus": { "chromosome": "13", "start_pos": 43865423, "end_pos": 43563141, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084162.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084162.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070565.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070565.1" } ] } }, { "isoform_ac": "A0A8W4FPS4-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH0/entry#A0A8W4FPS4-1", "sequence": { "sequence": "MKNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENREIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPSSLSSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVKSVEYLRNNFRPQQGLYDRVVSKSAVHDAWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSKPETIYHPPIMNYIISYSWTKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGSSTWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFSGGGISSFPSTVWPTRLPTAASASKQAVRPVLATTEALAAPSPDGDAAPTKDSEGAEEGEKDEKSESEDGEREHEEEGEKDSEKKERSGVTHAARARNPTEPTPAPSAPGTAAQEGGHQTIAGRQRDHAASPTARPEEAQDPRPVTSTQVPPTVTEEHEEKSDPKKPITPSKKPVYRGDRFSEDSKFITVNPAEKNTSGMMSRSSPGRMEWIIPLIVVSALTFVCLILLIAVLVYWRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPDNKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKVHACYTIRRFSVRNTKVKKGQKGNPKGRQNERMVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARTPEMGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEFVYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSTFELINVIKEEALTRDGPTIVHDEAVLL", "length": 1206, "header": "tr|A0A8W4FPS4-1|F1SGH0_PIG Computationally mapped isoform of Receptor-type tyrosine-protein phosphatase gamma OS=Sus scrofa OX=9823 GN=PTPRG PE=1 SV=1 CANONICAL=F1SGH0-1" }, "locus": { "chromosome": "13", "start_pos": 43884850, "end_pos": 43549154, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102368.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102368.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080944.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080944.1" } ] } }, { "isoform_ac": "F1SGH0-1", "url": "https://www.uniprot.org/uniprotkb/F1SGH0/entry#F1SGH0-1", "sequence": { "sequence": "MVAPFFMEPLFISTVSCIRFRVMGKSMANECLVGFGHRGGPVGKYTLEDAVLDFPMFYSFHLLEPSGLRSYFLLTGAYGPEHWVTSSVSCGGRHQSPIDILDQHARVGEEYQELQLDGFDVESSNKTWMKNTGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEMQIFFYNPDDFDSFQTAISENREIGAMAIFFQVSPRDNSALDPIIHGLKGVVHHEKETFLDPFVLRDLLPSSLSSYYRYTGSLTTPPCSEIVEWIVFRRPVPISYHQLEAFYSIFTTEQQDHVKSVEYLRNNFRPQQGLYDRVVSKSAVHDAWNHDMTDFLENPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSKPETIYHPPIMNYIISYSWTKNEDEKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDMRSDFSQTMLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGSSTWTSSGIPFSFVSMATGMGPSSSGSQATVASVVTSTLLAGLGFSGGGISSFPSTVWPTRLPTAASASKQAVRPVLATTEALAAPSPDGDAAPTKDSEGAEEGEKDEKSESEDGEREHEEEGEKDSEKKERSGVTHAARARNPTEPTPAPSAPGTAAQEGGHQTIAGRQRDHAASPTARPEEAQDPRPVTSTQVPPTVTEEHEEKSDPKKPITPSKKPVYRGDRFSEDSKFITVNPAEKNTSGMMSRSSPGRMEWIIPLIVVSALTFVCLILLIAVLVYWRGCNKIKSKGFPRRFREVPSSGERGEKGSRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPDNKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSEEYGNIIVTLKSTKVHACYTIRRFSVRNTKVKKGQKGNPKGRQNERMVIQYHYTQWPDMGVPEYALPVLTFVRRSSAARTPEMGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSNQLHSYVNSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEFVYWPSREESMNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISSTFELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFVYKAMLSLVSTKENGNGPMTVDKNGAVLIADESDPAESMESLV", "length": 1452, "header": "tr|F1SGH0-1|F1SGH0_PIG Isoform 1 of Receptor-type tyrosine-protein phosphatase gamma OS=Sus scrofa OX=9823 GN=PTPRG PE=1 SV=4 CANONICAL=F1SGH0-1" }, "locus": { "chromosome": "13", "start_pos": 43865423, "end_pos": 43548770, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012568.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012568.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012239.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012239.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 636, "start_aa": "Thr", "end_pos": 636, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr636", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPS4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPS4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SGH0", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein tyrosine phosphatase activity", "id": "GO:0004725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004725", "evidence": [ { "database": "UniProtKB", "id": "F1SGH0", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SGH0", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of epithelial cell migration", "id": "GO:0010633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010633", "evidence": [ { "database": "UniProtKB", "id": "F1SGH0", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SGH0", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" } ], "pmid": "" }, { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "F1SGH0", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1188, "end_pos": 1190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1214, "end_pos": 1216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1259, "end_pos": 1261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 371, "end_pos": 373, "annotation": "n_glycosylation_sequon" }, { "start_pos": 456, "end_pos": 458, "annotation": "n_glycosylation_sequon" }, { "start_pos": 729, "end_pos": 731, "annotation": "n_glycosylation_sequon" }, { "start_pos": 820, "end_pos": 822, "annotation": "n_glycosylation_sequon" }, { "start_pos": 870, "end_pos": 872, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10684", "name": "", "equation": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10684", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10684" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" }, { "id": "PS51144", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51144" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Alpha-carbonic anhydrase", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 333, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 361, "end_pos": 460, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" }, { "id": "PS50056", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50056" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine specific protein phosphatases", "eco_id": "ECO_0000259", "start_pos": 1043, "end_pos": 1117, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGH0" }, { "id": "PS50055", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50055" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine-protein phosphatase", "eco_id": "ECO_0000259", "start_pos": 855, "end_pos": 1126, "start_aa": "Phe", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 636 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1188, "end_pos": 1190 }, { "start_pos": 1214, "end_pos": 1216 }, { "start_pos": 1259, "end_pos": 1261 }, { "start_pos": 125, "end_pos": 127 }, { "start_pos": 168, "end_pos": 170 }, { "start_pos": 371, "end_pos": 373 }, { "start_pos": 456, "end_pos": 458 }, { "start_pos": 729, "end_pos": 731 }, { "start_pos": 820, "end_pos": 822 }, { "start_pos": 870, "end_pos": 872 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPQ1-1", "uniprot_ac": "F1SPQ1", "uniprot_id": "F1SPQ1_PIG", "mass": { "chemical_mass": 83328.0, "monoisotopic_mass": 83328.0 }, "refseq": {}, "gene_names": [ { "name": "RFX4", "type": "recommended", "evidence": [ { "id": "F1SPQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1" } ] } ], "protein_names": [ { "name": "Transcription factor RFX4", "type": "recommended", "evidence": [ { "id": "F1SPQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1/entry#names_and_taxonomy" } ] }, { "name": "Regulatory factor X 4", "type": "synonym", "evidence": [ { "id": "F1SPQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcription factor that plays a role in early brain development. May activate transcription by interacting directly with the X-box. May activate transcription from CX3CL1 promoter through the X-box during brain development. May be required for neural tube ciliogenesis during embryogenesis.", "evidence": [ { "database": "UniProtKB", "id": "F1SPQ1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1#function" }, { "database": "UniProtKB", "id": "ARBA00053964", "url": "https://www.uniprot.org/uniprotkb/ARBA00053964#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPQ1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RFX4", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1", "locus": { "chromosome": "5", "start_pos": 13590851, "end_pos": 13758567, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000052141", "url": "https://www.ensembl.org/id/ENSSSCG00000052141" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000169", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000169", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521450", "url": "https://www.ncbi.nlm.nih.gov/gene/100521450", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039779", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039779", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057321", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057321", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521450", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521450", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SPQ1", "url": "https://www.orthodb.org/?gene=F1SPQ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12619", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12619", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12619:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12619:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02257", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02257", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25340", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25340", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1WCW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WCW4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPQ1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPQ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHCGLLEEPDMDSTESWIERCLNESENKRYSSHTSLGNVSNDENEEKENNRASKPHSTPATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQSKYHYYGIAVKESSQYYDVMYSKKGAAWVSETGKKEVSKQTVAYSPRSKLGTLLPEFPNVKDLNLPASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVCDSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDTRDEHRKLIIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERASELMRAMKGEGSTADVREDIILAEAAPPTPSPVPSFSPAKSATSVEVPPPSSPVSNPSPEYTGLSTTGAMQSYTWSLTYTVTTAAGSPAENSQQLPCMRSTHVPSSSVTHRIPVYPHREEHGYTGSYNYGSYGNQHPPPMQSQYPALPHDTAISGPLHYSPYHRSSAQYPFNSPTSRMEPCLMSSTPRLHPTPVTPRWPEVPTANTCYTSPSVHSTRYGNSSDMYTPLTTRRNSEYEHMQHFPGFAYINGEASTGWAK", "length": 735, "header": "tr|F1SPQ1-1|F1SPQ1_PIG Isoform 1 of Transcription factor RFX4 OS=Sus scrofa OX=9823 GN=RFX4 PE=4 SV=3 CANONICAL=F1SPQ1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WCW4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1/entry#A0A4X1WCW4-1", "sequence": { "sequence": "MNWAAFGGSEFFVPGGIQIEARCPLSRSSTEWYHYYGIAVKESSQYYDVMYSKKGAAWVSETGKKEVSKQTVAYSPRSKLGTLLPEFPNVKDLNLPASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVCDSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDTRDEHRKLIIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERASELMRAMKGEGSTADVREDIILAEAAPPTPSPVPSFSPAKSATSVEVPPPSSPVSNPSPEYTGLSTTGAMQSYTWSLTYTVTTAAGSPAENSQQLPCMRSTHVPSSSVTHRIPVYPHREEHGYTGSYNYGSYGNQHPPPMQSQYPALPHDTAISGPLHYSPYHRSSAQYPFNSPTSRMEPCLMSSTPRLHPTPVTPRWPEVPTANTCYTSPSVHSTRYGNSSDMYTPLTTRRNSEYEHMQHFPGFAYINGEASTGWAK", "length": 641, "header": "tr|A0A4X1WCW4-1|F1SPQ1_PIG Computationally mapped isoform of Transcription factor RFX4 OS=Sus scrofa OX=9823 GN=RFX4 PE=4 SV=1 CANONICAL=F1SPQ1-1" }, "locus": { "chromosome": "5", "start_pos": 13661268, "end_pos": 13592181, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052954.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052954.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048808.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048808.2" } ] } }, { "isoform_ac": "F1SPQ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1/entry#F1SPQ1-1", "sequence": { "sequence": "MHCGLLEEPDMDSTESWIERCLNESENKRYSSHTSLGNVSNDENEEKENNRASKPHSTPATLQWLEENYEIAEGVCIPRSALYMHYLDFCEKNDTQPVNAASFGKIIRQQFPQLTTRRLGTRGQSKYHYYGIAVKESSQYYDVMYSKKGAAWVSETGKKEVSKQTVAYSPRSKLGTLLPEFPNVKDLNLPASLPEEKVSTFIMMYRTHCQRILDTVIRANFDEVQSFLLHFWQGMPPHMLPVLGSSTVVNIVGVCDSILYKAISGVLMPTVLQALPDSLTQVIRKFAKQLDEWLKVALHDLPENLRNIKFELSRRFSQILRRQTSLNHLCQASRTVIHSADITFQMLEDWRNVDLNSITKQTLYTMEDTRDEHRKLIIQLYQEFDHLLEEQSPIESYIEWLDTMVDRCVVKVAAKRQGSLKKVAQQFLLMWSCFGTRVIRDMTLHSAPSFGSFHLIHLMFDDYVLYLLESLHCQERASELMRAMKGEGSTADVREDIILAEAAPPTPSPVPSFSPAKSATSVEVPPPSSPVSNPSPEYTGLSTTGAMQSYTWSLTYTVTTAAGSPAENSQQLPCMRSTHVPSSSVTHRIPVYPHREEHGYTGSYNYGSYGNQHPPPMQSQYPALPHDTAISGPLHYSPYHRSSAQYPFNSPTSRMEPCLMSSTPRLHPTPVTPRWPEVPTANTCYTSPSVHSTRYGNSSDMYTPLTTRRNSEYEHMQHFPGFAYINGEASTGWAK", "length": 735, "header": "tr|F1SPQ1-1|F1SPQ1_PIG Isoform 1 of Transcription factor RFX4 OS=Sus scrofa OX=9823 GN=RFX4 PE=4 SV=3 CANONICAL=F1SPQ1-1" }, "locus": { "chromosome": "5", "start_pos": 13758140, "end_pos": 13592181, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000177.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000177.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000175.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000175.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 506, "start_aa": "Thr", "end_pos": 506, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr506", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 672, "start_aa": "Thr", "end_pos": 672, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr672", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WCW4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WCW4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521450", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521450", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1SPQ1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SPQ1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SPQ1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SPQ1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SPQ1", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 697, "end_pos": 699, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPQ1" }, { "id": "PS51526", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51526" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RFX-type winged-helix", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 136, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 506, 672 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 23, "end_pos": 25 }, { "start_pos": 38, "end_pos": 40 }, { "start_pos": 697, "end_pos": 699 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIV7-1", "uniprot_ac": "F1SIV7", "uniprot_id": "F1SIV7_PIG", "mass": { "chemical_mass": 80047.0, "monoisotopic_mass": 80047.0 }, "refseq": { "ac": "XP_020924594", "name": "serine/threonine-protein kinase Nek4 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924594" }, "gene_names": [ { "name": "NEK4", "type": "recommended", "evidence": [ { "id": "F1SIV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ] }, { "name": "NEK4", "type": "synonym", "evidence": [ { "id": "XP_020924594", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924594" } ] } ], "protein_names": [ { "name": "non-specific serine/threonine protein kinase", "type": "recommended", "evidence": [ { "id": "F1SIV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV7/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "F1SIV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV7/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein kinase Nek4 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_020924594", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924594" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NEK4", "url": "https://www.uniprot.org/uniprotkb/F1SIV7", "locus": { "chromosome": "13", "start_pos": 34841366, "end_pos": 34896565, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011446", "url": "https://www.ensembl.org/id/ENSSSCG00000011446" } ] } } ], "crossref": [ { "id": "F1SIV7", "url": "https://alphafold.ebi.ac.uk/entry/F1SIV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011446", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011446", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08223", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08223", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106504146", "url": "https://www.ncbi.nlm.nih.gov/gene/106504146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44899", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44899", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44899:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44899:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2672351", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-383280", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020924594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924594", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZLQ6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2B3", "url": "https://www.uniprot.org/uniprotkb/A0A287A2B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2B3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2P4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2P4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2P4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATG8", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ATG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ATG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJ33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJ33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RJ33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RJ33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKN1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RKN1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RKN1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIV7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFCEGGDLYRKLKEQKGRLLPESQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKHQISLFLEATKAKTSKNNIKNSDCKSKPVATVVSEKAESSPEVVTPQPHSSEGSKTYVMDEDRCLSQEKPLVTGPLKTPTSVKGHTYKPDMSNTAESLATISRVNIDILPAERRNSVNNSLVQENQPKQLDASNELQVNCSISQVKERLQDNTKSSAQSENQFPAWSSDNITREKNVSVKPLQLLNKDQNLPKDWDQVAGGCVTEKQDRIDPSLQPYRSGSEPSLSRQRRQKKRGQTEHSGEKRQFQETPPCLLPSLPTIGKMDVTSTQNNAENQSKVVTGSVSSSGSSDISSSKDRPLSARERRRLKQSQEEIFPSGPSVRRASLSPLEPGKPQEEGHPIPAHWLSSDCSIAQERKLTHCLSEDELSSSTSSTDKSDGDSREHKGHTNEMSDLVQLMTQTLKLDSKESCEDLRVPDPVSEFKLHRKYRDTLILHGKVAEEAEEFHFKELPSAIMPGSEKIRRIVEVLRADVIRGLGIQLLEQVYDILEEEDELEREVRLQEHMGEKYMTYSVKARQLKFFEENVNF", "length": 707, "header": "tr|F1SIV7-1|F1SIV7_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=NEK4 PE=3 SV=4 CANONICAL=F1SIV7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZLQ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV7/entry#A0A286ZLQ6-1", "sequence": { "sequence": "MGFCEGGDLYRKLKEQKGRLLPESQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKHQISLFLEATKAKTSKNNIKNSDCKSKPVATVVSEKAESSPEVVTPQPHSSEGSKTYVMDEDRCLSQEKPLVTGPLKTPTSVKGHTYKPDMSNTAESLATISRVNIDILPAERRNSVNNSLVQENQPKQLDASNELQVNCSISQVKERLQDNTKSSAQSENQFPAWSSDNITREKNVSVKPLQLLNKDQNLPKDWDQVAGGCVTEKQDRIDPSLQPYRSGSEPSLSRQRRQKKRGQTEHSGEKRQFQETPPCLLPSLPTIGKMDVTSTQNNAENQSKVVTGSVSSSGSSDISSSKDRPLSARERRRLKQSQEEIFPSGPSVRRASLSPLEPGKPQEEGHPIPAHWLSSDCSIAQERKLTHCLSEDELSSSTSSTDKSDGDSREHKGHTNEMSDLVQLMTQTLKLDSKESCEDLRVPDPVSEFKLHRKYRDTLILHGKVAEEAEEFHFKELPSGGQFIVLHQAGKHVFTGEMYQTKEIMLANFYYFIRISP", "length": 670, "header": "tr|A0A286ZLQ6-1|F1SIV7_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=NEK4 PE=3 SV=1 CANONICAL=F1SIV7-1" }, "locus": { "chromosome": "13", "start_pos": 34883893, "end_pos": 34856906, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038250.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038250.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032372.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032372.1" } ] } }, { "isoform_ac": "A0A287A2B3-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV7/entry#A0A287A2B3-1", "sequence": { "sequence": "MPLTAYCYQRVVGRGSYGEVTLVRHRRDGRQYVIKKLNLQNASSRERRAAEQEAQLLSQLKHPNIVTYKESWEGGDGLLYIVMGFCEGGDLYRKLKEQKGRLLPESQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKHQISLFLEATKAKTSKNNIKNSDCKSKPVATVVSEKAESSPEVVTPQPHSSEGSKTYVMDEDRCLSQEKPLVTGPLKTPTSVKGHTYKPDMSNTAESLATISRVNIDILPAERRNSVNNSLVQENQPKQLDASNELQVNCSISQVKERLQDNTKSSAQSENQFPAWSSDNITREKNVSVKPLQLLNKDQNLPKDWDQVAGGCVTEKQDRIDPSLQPYRSGSEPSLSRQRRQKKRGQTEHSGEKRQFQETPPCLLPSLPTIGKMDVTSTQNNAENQSKVVTGSVSSSGSSDISSSKDRPLSARERRRLKQSQEEIFPSGPSVRRASLSPLEPGKPQEEGHPIPAHWLSSDCSIAQERKLTHCLSEDELSSSTSSTDKSDGDSREHKGHTNEMSDLVQLMTQTLKLDSKESCEDLRVPDPVSEFKLHRKYRDTLILHGKVAEEAEEFHFKELPSAIMPGSEKIRRIVEVLRADVIRGLGIQLLEQVYDILEEEDELERET", "length": 760, "header": "tr|A0A287A2B3-1|F1SIV7_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=NEK4 PE=3 SV=2 CANONICAL=F1SIV7-1" }, "locus": { "chromosome": "13", "start_pos": 34885741, "end_pos": 34841481, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041332.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041332.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038056.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038056.2" } ] } }, { "isoform_ac": "A0A287A2P4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV7/entry#A0A287A2P4-1", "sequence": { "sequence": "MPLTAYCYQRVVGRGSYGEVTLVRHRRDGRQYVIKKLNLQNASSRERRAAEQEAQLLSQLKHPNIVTYKESWEGGDGLLYIVMGFCEGGDLYRKLKEQKGRLLPESQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKHQISLFLEATKAKTSKNNIKNSDCKSKPVATVVSEKAESSPEVVTPQPHSSEGSKTYVMDEDRCLSQEKPLVTGPLKTPTSVKGHTYKPDMSNTAESLATISRVNIDILPAERRNSVNNSLVQENQPKQLDASNELQVNCSISQVKERLQDNTKSSAQSENQFPAWSSDNITREKNVSVKPLQLLNKDQNLPKDWDQVAGGCVTEKQDRIDPSLQPYRSGSEPSLSRQRRQKKRGQTEHSGEKRQFQETPPCLLPSLPTIGKMDVTSTQNNAENQSKVVTGSVSSSGSSDISSSKDRPLSARERRRLKQSQEEIFPSGPSVRRASLSPLEPGKPQEEGHPIPAHWLSSDCSIAQERKLTHCLSEDELSSSTSSTDKSDGDSREHKGHTNEMSDLVQLMTQTLKLDSKESCEDLRVPDPVSEFKLHRKYRDTLILHGKVAEEAEEFHFKELPSAIMPGSEKIRRIVEVLRADVIRGLGIQLLEQVYDILEEEDELERELINTPYILSI", "length": 769, "header": "tr|A0A287A2P4-1|F1SIV7_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=NEK4 PE=3 SV=2 CANONICAL=F1SIV7-1" }, "locus": { "chromosome": "13", "start_pos": 34885741, "end_pos": 34856069, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042456.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042456.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038022.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038022.2" } ] } }, { "isoform_ac": "A0A287ATG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV7/entry#A0A287ATG8-1", "sequence": { "sequence": "MPLTAYCYQRVVGRGSYGEVTLVRHRRDGRQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKHQISLFLEATKAKTSKNNIKNSDCKSKPVATVVSEKAESSPEVVTPQPHSSEGSKTYVMDEDRCLSQEKPLVTGPLKTPTSVKGHTYKPDMSNTAESLATISRVNIDILPAERRNSVNNSLVQENQPKQLDASNELQVNCSISQVKERLQDNTKSSAQSENQFPAWSSDNITREKNVSVKPLQLLNKDQNLPKDWDQVAGGCVTEKQDRIDPSLQPYRSGSEPSLSRQRRQKKRGQTEHSGEKRQFQETPPCLLPSLPTIGKMDVTSTQNNAENQSKVVTGSVSSSGSSDISSSKDRPLSARERRRLKQSQEEIFPSGPSVRRASLSPLEPGKPQEEGHPIPAHWLSSDCSIAQERKLTHCLSEDELSSSTSSTDKSDGDSREHKGHTNEMSDLVQLMTQTLKLDSKESCEDLRVPDPVSEFKLHRKYRDTLILHGKVAEEAEEFHFKELPSAIMPGSEKIRRIVEVLRADVIRGLGIQLLEQVYDILEEEDELEREVRLQEHMGEKYMTYSVKARQLKFFEENVNF", "length": 700, "header": "tr|A0A287ATG8-1|F1SIV7_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=NEK4 PE=3 SV=3 CANONICAL=F1SIV7-1" }, "locus": { "chromosome": "13", "start_pos": 34885741, "end_pos": 34846139, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054306.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054306.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047378.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047378.3" } ] } }, { "isoform_ac": "A0A5G2RJ33-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV7/entry#A0A5G2RJ33-1", "sequence": { "sequence": "MPLTAYCYQRVVGRGSYGEVTLVRHRRDGRQYVIKKLNLQNASSRERRAAEQEAQLLSQLKHPNIVTYKESWEGGDGLLYIVMGFCEGGDLYRKLKEQKGRLLPESQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKHQISLFLEATKAKTSKNNIKNSDCKSKPVATVVSEKAESSPEVVTPQPHSSEGSKTYVMDEDRCLSQEKPLVTGPLKTPTSVKGHTYKPDMSNTAESLATISRVNIDILPAERRNSVNNSLVQENQPKQLDASNELQVNCSISQVKERLQDNTKSSAQSENQFPAWSSDNITREKNVSVKPLQLLNKDQNLPKDWDQVAGGCVTEKQDRIDPSLQPYRSGSEPSLSRQRRQKKRGQTEHSGEKRQFQETPPCLLPSLPTIGKMDVTSTQNNAENQSKVVTGSVSSSGSSDISSSKDRPLSARERRRLKQSQEEIFPSGPSVRRASLSPLEPGKPQEEGHPIPAHWLSSDCSIAQERKLTHCLSEDELSSSTSSTDKSDGDSREHKGHTNEMSDLVQLMTQTLKLDSKESCEDLRVPDPVSEFKLHRKYRDTLILHGKVAEEAEEFHFKELPSAIMPGSEKIRRIVEVLRADVIRGLGIQLLEQVYDILEEEDELEREVRLQEHMGEKYMTYSVKARQLKFFEENVNF", "length": 789, "header": "tr|A0A5G2RJ33-1|F1SIV7_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=NEK4 PE=3 SV=2 CANONICAL=F1SIV7-1" }, "locus": { "chromosome": "13", "start_pos": 34885741, "end_pos": 34846139, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079462.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079462.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071744.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071744.2" } ] } }, { "isoform_ac": "A0A5G2RKN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV7/entry#A0A5G2RKN1-1", "sequence": { "sequence": "MGFCEGGDLYRKLKEQKGRLLPESQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKHQISLFLEATKAKTSKNNIKNSDCKSKPVATVVSEKAESSPEVVTPQPHSSEGSKTYVMDEDRCLSQEKPLVTGPLKTPTSVKGHTYKPDMSNTAESLATISRVNIDILPAERRNSVNNSLVQENQPKQLDASNELQVNCSISQVKERLQDNTKSSAQSENQFPAWSSDNITREKNVSVKPLQLLNKDQNLPKDWDQVAGGCVTEKQDRIDPSLQPYRSGSEPSLSRQRRQKKRGQTEHSGEKRQFQETPPCLLPSLPTIGKMDVTSTQNNAENQSKVVTGSVSSSGSSDISSSKDRPLSARERRRLKQSQEEIFPSGPSVRRASLSPLEPGKPQEEGHPIPAHWLSSDCSIAQERKLTHCLSEDELSSSTSSTDKSDGDSREHKGHTNEMSDLVQLMTQTLKLDSKESCEDLRVPDPVSEFKLHRKYRDTLILHGKVAEEAEEFHFKELPSAIMPGSEKIRRIVEVLRADVIRGLGIQLLEQVYDILEEEDELEREHKVILGQGSDLSFICELSYSCSNAGSLTHCAKLGNQTCVSALPRCHQSSCATAGTLFPHFFFGKN", "length": 742, "header": "tr|A0A5G2RKN1-1|F1SIV7_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=NEK4 PE=3 SV=1 CANONICAL=F1SIV7-1" }, "locus": { "chromosome": "13", "start_pos": 34883893, "end_pos": 34854544, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077963.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077963.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072702.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072702.1" } ] } }, { "isoform_ac": "F1SIV7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV7/entry#F1SIV7-1", "sequence": { "sequence": "MGFCEGGDLYRKLKEQKGRLLPESQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENHCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKDMNSLVYRIIEGKLPPMPKDYSPELAELIRTMLSKRPEERPSVRSILRQPYIKHQISLFLEATKAKTSKNNIKNSDCKSKPVATVVSEKAESSPEVVTPQPHSSEGSKTYVMDEDRCLSQEKPLVTGPLKTPTSVKGHTYKPDMSNTAESLATISRVNIDILPAERRNSVNNSLVQENQPKQLDASNELQVNCSISQVKERLQDNTKSSAQSENQFPAWSSDNITREKNVSVKPLQLLNKDQNLPKDWDQVAGGCVTEKQDRIDPSLQPYRSGSEPSLSRQRRQKKRGQTEHSGEKRQFQETPPCLLPSLPTIGKMDVTSTQNNAENQSKVVTGSVSSSGSSDISSSKDRPLSARERRRLKQSQEEIFPSGPSVRRASLSPLEPGKPQEEGHPIPAHWLSSDCSIAQERKLTHCLSEDELSSSTSSTDKSDGDSREHKGHTNEMSDLVQLMTQTLKLDSKESCEDLRVPDPVSEFKLHRKYRDTLILHGKVAEEAEEFHFKELPSAIMPGSEKIRRIVEVLRADVIRGLGIQLLEQVYDILEEEDELEREVRLQEHMGEKYMTYSVKARQLKFFEENVNF", "length": 707, "header": "tr|F1SIV7-1|F1SIV7_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=NEK4 PE=3 SV=4 CANONICAL=F1SIV7-1" }, "locus": { "chromosome": "13", "start_pos": 34883893, "end_pos": 34846139, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012526.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012526.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012198.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012198.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZLQ6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLQ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2672351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "resource": "Reactome", "description": "Stimuli-sensing channels" }, { "id": "R-SSC-383280", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "resource": "Reactome", "description": "Nuclear Receptor transcription pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "positive regulation of canonical Wnt signaling pathway", "id": "GO:0090263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090263", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "regulation of cellular senescence", "id": "GO:2000772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000772", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" }, { "name": "regulation of monoatomic cation transmembrane transport", "id": "GO:1904062", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904062", "evidence": [ { "database": "UniProtKB", "id": "F1SIV7", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" }, { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" }, { "start_pos": 454, "end_pos": 456, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] }, { "id": "R-SSC-2682349", "name": "RAF1:SGK:TSC22D3:WPP ubiquitinates SCNN channels", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, plasma membrane", "input_participant_list": [], "output_participant_list": [ "R-ALL-947590" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2682349", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2682349" } ] }, { "id": "R-SSC-376419", "name": "Formation of NR-MED1 Coactivator Complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-376419", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-376419" } ] }, { "id": "R-SSC-382096", "name": "Formation of NR-NCOR Corepressor Complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-382096", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382096" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-947590", "participant_name": "Pi [plasma membrane]", "crossref": [ { "id": "C00009", "database": "COMPOUND", "url": "" }, { "id": "43474", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 707, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIV7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV7" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 179, "start_aa": "Met", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 298, "end_pos": 300 }, { "start_pos": 319, "end_pos": 321 }, { "start_pos": 350, "end_pos": 352 }, { "start_pos": 356, "end_pos": 358 }, { "start_pos": 454, "end_pos": 456 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGZ8-1", "uniprot_ac": "F1SGZ8", "uniprot_id": "F1SGZ8_PIG", "mass": { "chemical_mass": 40267.0, "monoisotopic_mass": 40267.0 }, "refseq": { "ac": "XP_005664212", "name": "twinfilin-1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664212" }, "gene_names": [ { "name": "TWF1", "type": "recommended", "evidence": [ { "id": "F1SGZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ] }, { "name": "TWF1", "type": "synonym", "evidence": [ { "id": "XP_005664212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664212" } ] } ], "protein_names": [ { "name": "Twinfilin-1", "type": "recommended", "evidence": [ { "id": "F1SGZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#names_and_taxonomy" } ] }, { "name": "twinfilin-1", "type": "synonym", "evidence": [ { "id": "XP_005664212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664212" } ] } ], "function": [ { "annotation": "Actin-binding protein involved in motile and morphological processes. Inhibits actin polymerization, likely by sequestering G-actin. By capping the barbed ends of filaments, it also regulates motility. Seems to play an important role in clathrin-mediated endocytosis and distribution of endocytic organelles.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2T9", "url": "https://www.uniprot.org/uniprotkb/A0A287A2T9#function" }, { "database": "UniProtKB", "id": "ARBA00037775", "url": "https://www.uniprot.org/uniprotkb/ARBA00037775#function" }, { "database": "UniProtKB", "id": "A0A8W4FF91", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF91#function" }, { "database": "UniProtKB", "id": "A0A8W4FFL5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFL5#function" }, { "database": "UniProtKB", "id": "A0A8W4FPB3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPB3#function" }, { "database": "UniProtKB", "id": "A0A8D1PS62", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PS62#function" }, { "database": "UniProtKB", "id": "A0A287AEW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW7#function" }, { "database": "UniProtKB", "id": "A0A287AWN9", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN9#function" }, { "database": "UniProtKB", "id": "A0A5G2RDX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDX5#function" }, { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TWF1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8", "locus": { "chromosome": "5", "start_pos": 74868585, "end_pos": 74893698, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000798", "url": "https://www.ensembl.org/id/ENSSSCG00000000798" } ] } } ], "crossref": [ { "id": "F1SGZ8", "url": "https://alphafold.ebi.ac.uk/entry/F1SGZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000798", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000798", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11284", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11284", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11285", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11285", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523377", "url": "https://www.ncbi.nlm.nih.gov/gene/100523377", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028458", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028458", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523377", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523377", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YLFKHTH", "url": "https://omabrowser.org/oma/group/YLFKHTH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGZ8", "url": "https://www.orthodb.org/?gene=F1SGZ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13759", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13759", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13759:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13759:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013418", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013418", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005664212", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664212", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A2T9", "url": "https://www.uniprot.org/uniprotkb/A0A287A2T9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2T9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEW7", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AEW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AEW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWN9", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWN9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDX5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1PS62", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PS62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1PS62-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1PS62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF91", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FF91-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FF91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFL5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFL5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPB3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHQTGIQASEDVKDIFARARNGKYRLLKISIENEKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 350, "header": "tr|F1SGZ8-1|F1SGZ8_PIG Isoform 1 of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=1 CANONICAL=F1SGZ8-1" }, "isoforms": [ { "isoform_ac": "A0A287A2T9-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#A0A287A2T9-1", "sequence": { "sequence": "MSHQTGIQASEDVKDIFARARNGKYRLLKISIENEKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 318, "header": "tr|A0A287A2T9-1|F1SGZ8_PIG Computationally mapped isoform of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=1 CANONICAL=F1SGZ8-1" }, "locus": { "chromosome": "5", "start_pos": 74881114, "end_pos": 74870579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038078.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038078.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038242.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038242.1" } ] } }, { "isoform_ac": "A0A287AEW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#A0A287AEW7-1", "sequence": { "sequence": "MSCLPSTVWCCSRTLPQTSSEDVKDIFARARNGKYRLLKISIENEKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLDVFLSVCSLGLSCSFMRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 360, "header": "tr|A0A287AEW7-1|F1SGZ8_PIG Computationally mapped isoform of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=2 CANONICAL=F1SGZ8-1" }, "locus": { "chromosome": "5", "start_pos": 74893698, "end_pos": 74870579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040799.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040799.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042533.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042533.2" } ] } }, { "isoform_ac": "A0A287AWN9-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#A0A287AWN9-1", "sequence": { "sequence": "MSHQTGIQEKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 324, "header": "tr|A0A287AWN9-1|F1SGZ8_PIG Computationally mapped isoform of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=2 CANONICAL=F1SGZ8-1" }, "locus": { "chromosome": "5", "start_pos": 74881114, "end_pos": 74870579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045088.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045088.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048313.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048313.2" } ] } }, { "isoform_ac": "A0A5G2RDX5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#A0A5G2RDX5-1", "sequence": { "sequence": "KIRTKLNEDVKDIFARARNGKYRLLKISIENEKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLDVFLSVCSLGLSCSFMRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 347, "header": "tr|A0A5G2RDX5-1|F1SGZ8_PIG Computationally mapped isoform of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=1 CANONICAL=F1SGZ8-1" }, "locus": { "chromosome": "5", "start_pos": 74880088, "end_pos": 74870579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071068.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071068.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069007.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069007.1" } ] } }, { "isoform_ac": "A0A8D1PS62-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#A0A8D1PS62-1", "sequence": { "sequence": "LKHKLNILVYLSLSFSPASEDVKDIFARARNGKYRLLKISIENEKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINENPEDHIGVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLDVFLSVCSLGLSCSFMRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 366, "header": "tr|A0A8D1PS62-1|F1SGZ8_PIG Computationally mapped isoform of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=1 CANONICAL=F1SGZ8-1" }, "locus": { "chromosome": "5", "start_pos": 74879668, "end_pos": 74870579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083369.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083369.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065456.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065456.1" } ] } }, { "isoform_ac": "A0A8W4FF91-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#A0A8W4FF91-1", "sequence": { "sequence": "SEDVKDIFARARNGKYRLLKISIENEKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLDVFLSVCSLGLSCSFMRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 341, "header": "tr|A0A8W4FF91-1|F1SGZ8_PIG Computationally mapped isoform of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=1 CANONICAL=F1SGZ8-1" }, "locus": { "chromosome": "5", "start_pos": 74879436, "end_pos": 74870579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101653.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101653.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077982.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077982.1" } ] } }, { "isoform_ac": "A0A8W4FFL5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#A0A8W4FFL5-1", "sequence": { "sequence": "ISFDKKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLDVFLSVCSLGLSCSFMRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 320, "header": "tr|A0A8W4FFL5-1|F1SGZ8_PIG Computationally mapped isoform of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=1 CANONICAL=F1SGZ8-1" }, "locus": { "chromosome": "5", "start_pos": 74878064, "end_pos": 74870579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100106.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100106.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077107.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077107.1" } ] } }, { "isoform_ac": "A0A8W4FPB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#A0A8W4FPB3-1", "sequence": { "sequence": "MSHQTGIQASEDVKDIFARARNGKYRLLKISIENEKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINENPEDHIGVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 357, "header": "tr|A0A8W4FPB3-1|F1SGZ8_PIG Computationally mapped isoform of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=1 CANONICAL=F1SGZ8-1" }, "locus": { "chromosome": "5", "start_pos": 74881114, "end_pos": 74870579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105277.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105277.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080758.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080758.1" } ] } }, { "isoform_ac": "F1SGZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8/entry#F1SGZ8-1", "sequence": { "sequence": "MSHQTGIQASEDVKDIFARARNGKYRLLKISIENEKLVIGSCRQPSDSWDKDYDSFVLPMLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEVIILANTVNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPSGKRGIRRLIRGPAETEATTD", "length": 350, "header": "tr|F1SGZ8-1|F1SGZ8_PIG Isoform 1 of Twinfilin-1 OS=Sus scrofa OX=9823 GN=TWF1 PE=1 SV=1 CANONICAL=F1SGZ8-1" }, "locus": { "chromosome": "5", "start_pos": 74881114, "end_pos": 74870579, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000865.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000865.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000848.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000848.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A2T9", "url": "https://www.uniprot.org/uniprotkb/A0A287A2T9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523377", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523377", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013418", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013418", "resource": "Reactome", "description": "RHOBTB2 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7IAN7-1", "protein_name": "Twinfilin-1", "gene_name": "Twf1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSCSEPSDSWEHDYDAFVLPLLEDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSPVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPISRDAFQALEKLSNKELNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMEVIRKIEIDNGDELTADFLYDEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAEAEATTD", "length": 350 }, "evidence": [ { "id": "F1SGZ8", "url": "https://omabrowser.org/oma/group/F1SGZ8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XDW8-1", "protein_name": "Twinfilin-1", "gene_name": "TWF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSHQTGIQASENVKDIFVGARNGKYRILKIVIDNEQLVLGSSRRPLGSWEKDYDAFVLPLLEDKQPCYILYRLDSQNAQGYEWIFIAWSPDHSPVRQKMLYAATRATLKKEFGGGHIKDEVFGTAEDDVSLNGYKKYLISQSAPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPIAKEAIQALEKLRNKQLNYVQLQIDMKNEIIILANTLHTELKDLPKRIPKDAARYHFFLYKHTHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLWMQIIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEAPSD", "length": 350 }, "evidence": [ { "id": "F1SGZ8", "url": "https://omabrowser.org/oma/group/F1SGZ8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P53250-1", "protein_name": "Twinfilin-1", "gene_name": "TWF1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSTQSGIVAEQALLHSLNENLSADGIVIIIAKISPDSTSVHQTQVARSFEELVQLASQEREPLYIFYKPEGLDKYFFVSFIPDGSPVRSRMLYASTKNTLARQVGSNSLSTEQPLITDAQDLVDLKNFDSARPAGQNKPLTHDEEMQIEINKQQALLRKNTSVKLVSQDSASPLSLTFRVNSEKPINEILDSEGKNLIIFQIDPSNETIQIVQSDTCPSVDELYIDLPGPSYTIFRQGDSSFFIYSCPSGSKVKDRMIYASNKNGFINYLKNDQKIAFSKVVEIGDFVELDKSLLMATNKEDSLDHGSNPDLPNKSNLKFNKPKGPLRKRRT", "length": 332 }, "evidence": [ { "id": "F1SGZ8", "url": "https://omabrowser.org/oma/group/F1SGZ8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12792-2", "protein_name": "Twinfilin-1", "gene_name": "TWF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVIGSYSQPSDSWDKDYDSFVLPLLEDKQPCYILFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVGVDTKHQTLQGVAFPISREAFQALEKLNNRQLNYVQLEIDIKNEIIILANTTNTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSRLLEIVERQLQMDVIRKIEIDNGDELTADFLYEEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAETEATTD", "length": 350 }, "evidence": [ { "id": "F1SGZ8", "url": "https://omabrowser.org/oma/group/F1SGZ8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5RJR2-1", "protein_name": "Twinfilin-1", "gene_name": "Twf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDPFVLPLLEDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYRKYLLSQSSPAPLTAAEEELRQIKISEVQTDVSVDTKHQTLQGVAFPISRDAFQALEKLSKRQLNYVQLEIDIKNETIILANTENTELKDLPKRIPKDSARYHFFLYKHSHEGDYLESIVFIYSMPGYTCSIRERMLYSSCKSPLLDIVERQLQMDVIRKIEIDNGDELTADFLYDEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAEAEATTD", "length": 350 }, "evidence": [ { "id": "F1SGZ8", "url": "https://omabrowser.org/oma/group/F1SGZ8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q869T1-1", "protein_name": "Twinfilin", "gene_name": "twfA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHSSGIPASQELISAFGSANTGDVRLIKVVIKNDELVVDQKLNVQSDFETDLELAHSVLQKDSPCYILYKKDDKSIELTGYNWIFMFFVPDNAKVREKMTYAATRGNLKRELGASHFVDEIYSSNMNDFSKKGYQQHKLHQESEAPLTMEEQQRNDEKEQGLFVGGGGSGMHVHGISFPVDSDASTAVSNFINKKFNYIELSVNVDDEKIIFSSSSNIDIEAISSKISSTEPSFHFFRYSHQHEGENLDSIIYIYSCPDGSNGTKSAPVRKRMLFSSSKANVEQLVTSHNVKIDLKLEINSPSEISEESIINELHPPKVEEKKAFSKPSRPGRK", "length": 335 }, "evidence": [ { "id": "F1SGZ8", "url": "https://omabrowser.org/oma/group/F1SGZ8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q91YR1-1", "protein_name": "Twinfilin-1", "gene_name": "Twf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSHQTGIQASEDVKEIFARARNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNAQGYEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLLSQSSPAPLTAAEEELRQIKINEVQTDVSVDTKHQTLQGVAFPISRDAFQALEKLSKKQLNYVQLEIDIKNETIILANTENTELRDLPKRIPKDSARYHFFLYKHSHEGDYLESVVFIYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVHPKQHAHKQSFAKPKGPAGKRGIRRLIRGPAEAEATTD", "length": 350 }, "evidence": [ { "id": "F1SGZ8", "url": "https://omabrowser.org/oma/group/F1SGZ8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VFM9-1", "protein_name": "Twinfilin", "gene_name": "twf", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSHQTGIRANEQLAKVFGKAKNGKFRVIKVSIENEQLSCGATAETKKDWERDYDKLIGPLLEKDVPCYILYRLDAKIPLGYSWLLISWTPDTASIRQKMVYASTKATLKTEFGSAYITEELHATTLDECTLEGYRRHKQDFAAPAPLTSREEELKELRKTEVHTEINTNTRHQTLGGINCPLSEATVAAVQDLVRGKHDYLQFRIDLEEEQIHVSRAAKVELADLPKQVPEDHARYHLFLFRHTHEGDYFESYVFVYSMPGYSCSVRERMMYSSCKAPFLDELAALGVEVVKKLEIDSGSELTEAFLQDELHPKKILHRPAFAKPKGPPNRGAKRLTRPTAED", "length": 343 }, "evidence": [ { "id": "F1SGZ8", "url": "https://omabrowser.org/oma/group/F1SGZ8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "actin monomer binding", "id": "GO:0003785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003785", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "protein tyrosine kinase activity", "id": "GO:0004713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004713", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "phosphatidylinositol-4,5-bisphosphate binding", "id": "GO:0005546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005546", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "actin filament", "id": "GO:0005884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005884", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "filopodium", "id": "GO:0030175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030175", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "ruffle membrane", "id": "GO:0032587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032587", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "myofibril", "id": "GO:0030016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030016", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "negative regulation of actin filament polymerization", "id": "GO:0030837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030837", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "positive regulation of neuron projection development", "id": "GO:0010976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010976", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "barbed-end actin filament capping", "id": "GO:0051016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051016", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "positive regulation of cardiac muscle hypertrophy", "id": "GO:0010613", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010613", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "regulation of lamellipodium assembly", "id": "GO:0010591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010591", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" }, { "name": "actin filament depolymerization", "id": "GO:0030042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030042", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ8", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGZ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 350, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGZ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGZ8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGZ8" }, { "id": "PS51263", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51263" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ADF-H", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 139, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ51-1", "uniprot_ac": "F1SJ51", "uniprot_id": "F1SJ51_PIG", "mass": { "chemical_mass": 26149.0, "monoisotopic_mass": 26149.0 }, "refseq": { "ac": "XP_001924607", "name": "secretory carrier-associated membrane protein 5 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924607" }, "gene_names": [ { "name": "SCAMP5", "type": "recommended", "evidence": [ { "id": "F1SJ51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ] }, { "name": "SCAMP5", "type": "synonym", "evidence": [ { "id": "XP_001924607", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924607" } ] } ], "protein_names": [ { "name": "Secretory carrier-associated membrane protein", "type": "recommended", "evidence": [ { "id": "F1SJ51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ51/entry#names_and_taxonomy" } ] }, { "name": "Secretory carrier membrane protein", "type": "synonym", "evidence": [ { "id": "F1SJ51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ51/entry#names_and_taxonomy" } ] }, { "name": "secretory carrier-associated membrane protein 5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001924607", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924607" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCAMP5", "url": "https://www.uniprot.org/uniprotkb/F1SJ51", "locus": { "chromosome": "7", "start_pos": 58550198, "end_pos": 58559310, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001887", "url": "https://www.ensembl.org/id/ENSSSCG00000001887" } ] } } ], "crossref": [ { "id": "F1SJ51", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ51", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001887", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001887", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156508", "url": "https://www.ncbi.nlm.nih.gov/gene/100156508", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156508", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156508", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TWPVGWI", "url": "https://omabrowser.org/oma/group/TWPVGWI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ51", "url": "https://www.orthodb.org/?gene=F1SJ51", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10687", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10687", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10687:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10687:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001924607", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924607", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QNH7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTI2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTI2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTI2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXB4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYI7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCB9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ51-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ51-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSTTPNYTYSNEM", "length": 235, "header": "tr|F1SJ51-1|F1SJ51_PIG Isoform 1 of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP5 PE=1 SV=2 CANONICAL=F1SJ51-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNH7-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ51/entry#A0A5G2QNH7-1", "sequence": { "sequence": "VHLNLERLGHLEGREALAVCPGDRSHLLCFRTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSTTPNYTYSNEM", "length": 168, "header": "tr|A0A5G2QNH7-1|F1SJ51_PIG Computationally mapped isoform of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP5 PE=1 SV=1 CANONICAL=F1SJ51-1" }, "locus": { "chromosome": "7", "start_pos": 58553832, "end_pos": 58552663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068662.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068662.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063638.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063638.1" } ] } }, { "isoform_ac": "A0A5G2QTI2-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ51/entry#A0A5G2QTI2-1", "sequence": { "sequence": "MATGKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGAAPQLSSFCSGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSTTPNYTYSNEM", "length": 244, "header": "tr|A0A5G2QTI2-1|F1SJ51_PIG Computationally mapped isoform of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP5 PE=1 SV=2 CANONICAL=F1SJ51-1" }, "locus": { "chromosome": "7", "start_pos": 58558637, "end_pos": 58552663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080094.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080094.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068143.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068143.2" } ] } }, { "isoform_ac": "A0A5G2QXB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ51/entry#A0A5G2QXB4-1", "sequence": { "sequence": "TEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCPQLSSFCSGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSTTPNYTYSNEM", "length": 242, "header": "tr|A0A5G2QXB4-1|F1SJ51_PIG Computationally mapped isoform of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP5 PE=1 SV=2 CANONICAL=F1SJ51-1" }, "locus": { "chromosome": "7", "start_pos": 58558533, "end_pos": 58552663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089481.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089481.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069574.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069574.2" } ] } }, { "isoform_ac": "A0A5G2QYI7-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ51/entry#A0A5G2QYI7-1", "sequence": { "sequence": "MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCPTLSSFCSGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSTTPNYTYSNEM", "length": 243, "header": "tr|A0A5G2QYI7-1|F1SJ51_PIG Computationally mapped isoform of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP5 PE=1 SV=1 CANONICAL=F1SJ51-1" }, "locus": { "chromosome": "7", "start_pos": 58559262, "end_pos": 58552663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066974.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066974.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063279.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063279.1" } ] } }, { "isoform_ac": "A0A8W4FCB9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ51/entry#A0A8W4FCB9-1", "sequence": { "sequence": "MATGKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSTTPNYTYSNEITLRAVGCTWTCPVQW", "length": 251, "header": "tr|A0A8W4FCB9-1|F1SJ51_PIG Computationally mapped isoform of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP5 PE=1 SV=1 CANONICAL=F1SJ51-1" }, "locus": { "chromosome": "7", "start_pos": 58558637, "end_pos": 58552401, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095254.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095254.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075943.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075943.1" } ] } }, { "isoform_ac": "F1SJ51-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ51/entry#F1SJ51-1", "sequence": { "sequence": "MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSTTPNYTYSNEM", "length": 235, "header": "tr|F1SJ51-1|F1SJ51_PIG Isoform 1 of Secretory carrier-associated membrane protein OS=Sus scrofa OX=9823 GN=SCAMP5 PE=1 SV=2 CANONICAL=F1SJ51-1" }, "locus": { "chromosome": "7", "start_pos": 58559262, "end_pos": 58552663, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002113.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002113.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002063.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002063.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FCB9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCB9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156508", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156508", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3I831-1", "protein_name": "Secretory carrier-associated membrane protein", "gene_name": "Scamp5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTIMFTVVAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSATPNYTYSNEM", "length": 235 }, "evidence": [ { "id": "F1SJ51", "url": "https://omabrowser.org/oma/group/F1SJ51/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8TAC9-1", "protein_name": "Secretory carrier-associated membrane protein 5", "gene_name": "SCAMP5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSATPNYTYSNEM", "length": 235 }, "evidence": [ { "id": "F1SJ51", "url": "https://omabrowser.org/oma/group/F1SJ51/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9C6X2-1", "protein_name": "Secretory carrier-associated membrane protein 4", "gene_name": "SCAMP4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNRHHDPNPFDEDEEIVNPFSKGGGRVPAASRPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPLYRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAGIFYFIGFGLFCLESLLSLWVLQKIYLYFRGNK", "length": 264 }, "evidence": [ { "id": "F1SJ51", "url": "https://omabrowser.org/oma/group/F1SJ51/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JKD3-1", "protein_name": "Secretory carrier-associated membrane protein 5", "gene_name": "Scamp5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSATPNYTYSNEM", "length": 235 }, "evidence": [ { "id": "F1SJ51", "url": "https://omabrowser.org/oma/group/F1SJ51/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JKE3-1", "protein_name": "Secretory carrier-associated membrane protein 5", "gene_name": "Scamp5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNSVTLAVNLVGCLAWLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSGGSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQTQYSTTPNYTYSNEM", "length": 235 }, "evidence": [ { "id": "F1SJ51", "url": "https://omabrowser.org/oma/group/F1SJ51/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "negative regulation of endocytosis", "id": "GO:0045806", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045806", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "positive regulation of cytokine production", "id": "GO:0001819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001819", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "exocytosis", "id": "GO:0006887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006887", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "response to endoplasmic reticulum stress", "id": "GO:0034976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034976", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "positive regulation of calcium ion-dependent exocytosis", "id": "GO:0045956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045956", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "trans-Golgi network membrane", "id": "GO:0032588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032588", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "recycling endosome membrane", "id": "GO:0055038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055038", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "F1SJ51", "url": "https://www.uniprot.org/uniprotkb/F1SJ51" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ51-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 235, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ51-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ51" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 228, "end_pos": 230 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMW5-1", "uniprot_ac": "F1SMW5", "uniprot_id": "F1SMW5_PIG", "mass": { "chemical_mass": 36132.0, "monoisotopic_mass": 36132.0 }, "refseq": { "ac": "XP_001925948", "name": "3-ketodihydrosphingosine reductase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925948" }, "gene_names": [ { "name": "KDSR", "type": "recommended", "evidence": [ { "id": "F1SMW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ] }, { "name": "KDSR", "type": "synonym", "evidence": [ { "id": "XP_001925948", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925948" } ] } ], "protein_names": [ { "name": "3-ketodihydrosphingosine reductase", "type": "recommended", "evidence": [ { "id": "F1SMW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW5/entry#names_and_taxonomy" } ] }, { "name": "1.1.1.102", "type": "synonym", "evidence": [ { "id": "F1SMW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW5/entry#names_and_taxonomy" } ] }, { "name": "3-dehydrosphinganine reductase", "type": "synonym", "evidence": [ { "id": "F1SMW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW5/entry#names_and_taxonomy" } ] }, { "name": "3-ketodihydrosphingosine reductase", "type": "synonym", "evidence": [ { "id": "XP_001925948", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925948" } ] } ], "function": [ { "annotation": "Catalyzes the reduction of 3'-oxosphinganine (3-ketodihydrosphingosine/KDS) to sphinganine (dihydrosphingosine/DHS), the second step of de novo sphingolipid biosynthesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG8#function" }, { "database": "UniProtKB", "id": "ARBA00044737", "url": "https://www.uniprot.org/uniprotkb/ARBA00044737#function" }, { "database": "UniProtKB", "id": "A0A287A8D8", "url": "https://www.uniprot.org/uniprotkb/A0A287A8D8#function" }, { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KDSR", "url": "https://www.uniprot.org/uniprotkb/F1SMW5", "locus": { "chromosome": "1", "start_pos": 158329881, "end_pos": 158288544, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025744", "url": "https://www.ensembl.org/id/ENSSSCG00000025744" } ] } } ], "crossref": [ { "id": "ENSSSCG00000025744", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025744", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08939", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08939", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152988", "url": "https://www.ncbi.nlm.nih.gov/gene/100152988", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045022", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045022", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152988", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152988", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ICGVFEE", "url": "https://omabrowser.org/oma/group/ICGVFEE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMW5", "url": "https://www.orthodb.org/?gene=F1SMW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43550", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43550", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43550:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43550:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1660661", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925948", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925948", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "22640", "url": "https://www.rhea-db.org/rhea/22640", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A8D8", "url": "https://www.uniprot.org/uniprotkb/A0A287A8D8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A8D8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A8D8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS28", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QS28-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QS28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVAYPPDTDTPGFAEENKTKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSIGSDGYMLSSLTCGMAPVTSITEGLQQVVTMGLFRTIALFYLGSFDSIVRRCMMQRARSEIADKTA", "length": 332, "header": "tr|F1SMW5-1|F1SMW5_PIG Isoform 1 of 3-ketodihydrosphingosine reductase OS=Sus scrofa OX=9823 GN=KDSR PE=1 SV=1 CANONICAL=F1SMW5-1" }, "isoforms": [ { "isoform_ac": "A0A287A8D8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW5/entry#A0A287A8D8-1", "sequence": { "sequence": "MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVAYPPDTDTPGFAEENKTKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSIGSDGYMLSSLTCGMAPVTSITEGLQQVVTMGLFRTIALFYLGSFDSIVRRCMMQRARSEIADKTA", "length": 313, "header": "tr|A0A287A8D8-1|F1SMW5_PIG Computationally mapped isoform of 3-ketodihydrosphingosine reductase OS=Sus scrofa OX=9823 GN=KDSR PE=1 SV=2 CANONICAL=F1SMW5-1" }, "locus": { "chromosome": "1", "start_pos": 158325610, "end_pos": 158288777, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039219.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039219.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040051.2", "url": "https://www.ensembl.org/id/ENSSSCP00000040051.2" } ] } }, { "isoform_ac": "A0A5G2QJG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW5/entry#A0A5G2QJG8-1", "sequence": { "sequence": "MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVAYPPDTDTPGFAEENKTKPLETRLISETTSVCKPEQVAKQIVKDAIVVTMGLFRTIALFYLGSFDSIVRRCMMQRARSEIADKTA", "length": 298, "header": "tr|A0A5G2QJG8-1|F1SMW5_PIG Computationally mapped isoform of 3-ketodihydrosphingosine reductase OS=Sus scrofa OX=9823 GN=KDSR PE=1 SV=1 CANONICAL=F1SMW5-1" }, "locus": { "chromosome": "1", "start_pos": 158325610, "end_pos": 158288777, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068024.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068024.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064617.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064617.1" } ] } }, { "isoform_ac": "A0A5G2QS28-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW5/entry#A0A5G2QS28-1", "sequence": { "sequence": "MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFEVKPYNVYVTVAYPPDTDTPGFAEENKTKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSIGSDGYMLSSLTCGMAPVTSITEGLQQVVTMGLFRTIALFYLGSFDSIVRRCMMQRARSEIADKTA", "length": 268, "header": "tr|A0A5G2QS28-1|F1SMW5_PIG Computationally mapped isoform of 3-ketodihydrosphingosine reductase OS=Sus scrofa OX=9823 GN=KDSR PE=1 SV=1 CANONICAL=F1SMW5-1" }, "locus": { "chromosome": "1", "start_pos": 158325610, "end_pos": 158288777, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076201.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076201.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067730.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067730.1" } ] } }, { "isoform_ac": "F1SMW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW5/entry#F1SMW5-1", "sequence": { "sequence": "MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSVNYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVAYPPDTDTPGFAEENKTKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSIGSDGYMLSSLTCGMAPVTSITEGLQQVVTMGLFRTIALFYLGSFDSIVRRCMMQRARSEIADKTA", "length": 332, "header": "tr|F1SMW5-1|F1SMW5_PIG Isoform 1 of 3-ketodihydrosphingosine reductase OS=Sus scrofa OX=9823 GN=KDSR PE=1 SV=1 CANONICAL=F1SMW5-1" }, "locus": { "chromosome": "1", "start_pos": 158325610, "end_pos": 158288777, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031522.3", "url": "https://www.ensembl.org/id/ENSSSCT00000031522.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019781.1", "url": "https://www.ensembl.org/id/ENSSSCP00000019781.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 212, "start_aa": "Thr", "end_pos": 212, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr212", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A8D8", "url": "https://www.uniprot.org/uniprotkb/A0A287A8D8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152988", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152988", "resource": "KEGG Pathway" }, { "id": "R-SSC-1660661", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1660661", "resource": "Reactome", "description": "Sphingolipid de novo biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YJG4-1", "protein_name": "3-dehydrosphinganine reductase", "gene_name": "KDSR", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLLLAAAFIVAIVLLLYMVSPLISPKPLKLPGAHVVVTGGSSGIGKCIAIECYKQGAFITLIARDENKLLQTKKEIEKYSVNDKQVVLCISVDVSKDYEQVENVLKQAQEKLGPVDLLVNCAGTSVTGKFEDIEVNSFERLMAVNYLGSVYPSRAVISTMKERRMGRIVFVSSQAGQLGLFGYTAYSPTKFALRGLAEALQMEVKPYNIYVTVAYPPDTDTPGFAEESKTKPLETKLISETSSVCQAEQVARVIVKDAIQGNFNSSVGSDGYMLSILTSGMSPVTSITEGLQQVVCMGIFRIVGLFYLGSFDSIVRRCMMQREKSENTDKTE", "length": 332 }, "evidence": [ { "id": "F1SMW5", "url": "https://omabrowser.org/oma/group/F1SMW5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HD45-1", "protein_name": "3-ketodihydrosphingosine reductase", "gene_name": "Kdsr", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLLLAAAGLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCVAIECFKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSLSGKFEELEVSAFEKLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVAYPPDTDTPGLAKENKTKPLETRLISETTSICKPEQVAKQIVKDAIQGNFNSSIGSDGYMLSSLTCGMAPVTSITEGLQQVVTMGLFRIIALFYLGSFDNIVRRCMVKKAKPETVDKTA", "length": 332 }, "evidence": [ { "id": "F1SMW5", "url": "https://omabrowser.org/oma/group/F1SMW5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q06136-1", "protein_name": "3-ketodihydrosphingosine reductase", "gene_name": "KDSR", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLLLAAAFLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEMHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGMAVSGKFEDLEVSTFERLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSASKFAIRGLAEALQMEVKPYNVYITVAYPPDTDTPGFAEENRTKPLETRLISETTSVCKPEQVAKQIVKDAIQGNFNSSLGSDGYMLSALTCGMAPVTSITEGLQQVVTMGLFRTIALFYLGSFDSIVRRCMMQREKSENADKTA", "length": 332 }, "evidence": [ { "id": "F1SMW5", "url": "https://omabrowser.org/oma/group/F1SMW5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WRJ2-1", "protein_name": "3-dehydrosphinganine reductase TSC10A", "gene_name": "TSC10A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAISPLFLLFLIPIIPLSLLAILALIVRPRPIKIPIKSRHAFITGGSSGIGLALAHRAASEGARVSILARSGSKLEEAKKSIQLATGVEVATFSADVRDYDAVSKAIDESGPIDVLIVNQGVFTAKELVKHSPEDVKFTIDVNLVGSFNVIKAALPAMKARKDRGPASISLVSSQAGQVGVYGYAAYSASKFGLQGLAQALQQEVISDDIHVTLIFPPDTNTPGFEEEQKSRPEVTAIIAASSGSMETEEVAKKAMDGIKAGNFTVSCNFEGFLLSLATTGMSPQRSFWLAFLEVITAGPIRLIALFFQWDWYKAIEKWSKTKTK", "length": 326 }, "evidence": [ { "id": "F1SMW5", "url": "https://omabrowser.org/oma/group/F1SMW5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q2KIJ5-1", "protein_name": "3-ketodihydrosphingosine reductase", "gene_name": "KDSR", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLLLAAASLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKEIEKHSINDKQVVLCISVDVSQDYSQVENVIKQAQEKLGPVDMLVNCAGMSLSGKFEDLEVSTFERLMSINYLGSVYPSRAVIATMKERRMGRVVFVSSQAGQLGLFGYTAYSSSKFALRGLAEALQMEVKPYNVYVTVAYPPDTDTPGFAKENQTKPLETRLISETTSVCKPEQVAKQIVKDAVQGNFNSSIGSDGYMLSSLTCGMAPVTSIMEGLQQVVTMGLFRTIALFYLGSFDSIVRRCMMQKAKLETVDKTA", "length": 332 }, "evidence": [ { "id": "F1SMW5", "url": "https://omabrowser.org/oma/group/F1SMW5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6GV12-1", "protein_name": "3-ketodihydrosphingosine reductase", "gene_name": "Kdsr", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLAAAGLVAFVLLLYMVSPLISPKPLALPGAHVVVTGGSSGIGKCIAIECYKQGAFITLVARNEDKLLQAKKDIEKHSINDKQVVLCISVDVSQDYNQVENVIKQAQEKLGPVDMLVNCAGTSMSGKFEELEVSSFEKLMSINYLGSVYPSRAVITTMKERRVGRIVFVSSQAGQLGLFGFTAYSSSKFAIRGLAEALQMEVKPYNVYVTVAYPPDTDTPGLAEENKTKPLETRLISETTAICKPEQVAKQIVKDAIQGNFNSSIGSDGYMLSSLTCGMAPVTSITEGLQQVVTMGLFRTIALFYLGSFDNIVRRCMVQKAKPEVVDKTA", "length": 332 }, "evidence": [ { "id": "F1SMW5", "url": "https://omabrowser.org/oma/group/F1SMW5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VBU5-1", "protein_name": "3-dehydrosphinganine reductase", "gene_name": "Kdsr", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MELSWEIVFCVGIAVLVHVLVYVFVMAKKPRSIVGRHVVVTGGSKGIGLCLAVECAMKGANVTVIARDEKMLSGAVALMEVIRQRPDQKFQYRSLDISGDYDQVAKVLGEIEDSFGPIYTLINCAGMAICGVFEEVSVQDVHKLMNVNFFGTYNCTRYVLPKMKKAGDGIIVITASQAAMFGIYGYGPYSATKYALRAMAETIAMESREHGVSVTLAMPCDTNTPGFEEEEKSKPRETKIISGGGGLIEPEVMAKAILKDALKGKFTSTVGAESWLITTLGGALLPWDGFFTNLLHAIVLGPLRIVSYALHKYFNSVIRKCAREDKAKATSQVESK", "length": 336 }, "evidence": [ { "id": "F1SMW5", "url": "https://omabrowser.org/oma/group/F1SMW5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "3-keto-sphinganine metabolic process", "id": "GO:0006666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006666", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" }, { "name": "sphingolipid biosynthetic process", "id": "GO:0030148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030148", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" }, { "name": "sphingomyelin biosynthetic process", "id": "GO:0006686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006686", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" }, { "name": "glycosphingolipid biosynthetic process", "id": "GO:0006688", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006688", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" }, { "name": "ceramide biosynthetic process", "id": "GO:0046513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046513", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "3-dehydrosphinganine reductase activity", "id": "GO:0047560", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047560", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" }, { "name": "nucleotide binding", "id": "GO:0000166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000166", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" }, { "name": "cytoplasmic side of endoplasmic reticulum membrane", "id": "GO:0098554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098554", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SMW5", "url": "https://www.uniprot.org/uniprotkb/F1SMW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "22640", "name": "", "equation": "sphinganine + NADP(+) = 3-oxosphinganine + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "22640", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/22640" } ] }, { "id": "R-SSC-428123", "name": "KDSR reduces 3-ketosphingoid", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-9841798" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-428123", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-428123" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-9841798", "participant_name": "3-ketosphingoid [endoplasmic reticulum membrane]", "crossref": [ { "id": "84411", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 212 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 228, "end_pos": 230 }, { "start_pos": 264, "end_pos": 266 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SL07-1", "uniprot_ac": "F1SL07", "uniprot_id": "F1SL07_PIG", "mass": { "chemical_mass": 42008.0, "monoisotopic_mass": 42008.0 }, "refseq": {}, "gene_names": [ { "name": "NDUFA9", "type": "recommended", "evidence": [ { "id": "F1SL07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SL07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL07/entry#names_and_taxonomy" } ] }, { "name": "Complex I-39kD", "type": "synonym", "evidence": [ { "id": "F1SL07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL07/entry#names_and_taxonomy" } ] }, { "name": "NADH-ubiquinone oxidoreductase 39 kDa subunit", "type": "synonym", "evidence": [ { "id": "F1SL07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL07/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFA9", "url": "https://www.uniprot.org/uniprotkb/F1SL07", "locus": { "chromosome": "5", "start_pos": 65759727, "end_pos": 65788646, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000719", "url": "https://www.ensembl.org/id/ENSSSCG00000000719" } ] } } ], "crossref": [ { "id": "F1SL07", "url": "https://alphafold.ebi.ac.uk/entry/F1SL07", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000719", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000719", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05271", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05271", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "5GPN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GPN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GUP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V30&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V33&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V3M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VB7", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VB7&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VWJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VWJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYA", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYA&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYF", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYF&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZ1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZ1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W00&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1T&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1V&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1Z&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W20&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W35&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4J&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4N&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4Q&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZO8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZOU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZP8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSK&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSM&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZXZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BUH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BWD&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BXV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CD6&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CDN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CE2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6W&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR001509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001509", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PEDQFTN", "url": "https://omabrowser.org/oma/group/PEDQFTN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12126", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12126", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12126:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12126:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005gpn", "url": "https://www.rcsb.org/structure/pdb_00005gpn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005gup", "url": "https://www.rcsb.org/structure/pdb_00005gup", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2c", "url": "https://www.rcsb.org/structure/pdb_00007v2c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2d", "url": "https://www.rcsb.org/structure/pdb_00007v2d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2e", "url": "https://www.rcsb.org/structure/pdb_00007v2e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2f", "url": "https://www.rcsb.org/structure/pdb_00007v2f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2h", "url": "https://www.rcsb.org/structure/pdb_00007v2h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2k", "url": "https://www.rcsb.org/structure/pdb_00007v2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2r", "url": "https://www.rcsb.org/structure/pdb_00007v2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v30", "url": "https://www.rcsb.org/structure/pdb_00007v30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v31", "url": "https://www.rcsb.org/structure/pdb_00007v31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v32", "url": "https://www.rcsb.org/structure/pdb_00007v32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v33", "url": "https://www.rcsb.org/structure/pdb_00007v33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v3m", "url": "https://www.rcsb.org/structure/pdb_00007v3m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vb7", "url": "https://www.rcsb.org/structure/pdb_00007vb7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbn", "url": "https://www.rcsb.org/structure/pdb_00007vbn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbz", "url": "https://www.rcsb.org/structure/pdb_00007vbz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vwj", "url": "https://www.rcsb.org/structure/pdb_00007vwj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxp", "url": "https://www.rcsb.org/structure/pdb_00007vxp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy8", "url": "https://www.rcsb.org/structure/pdb_00007vy8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vya", "url": "https://www.rcsb.org/structure/pdb_00007vya", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyf", "url": "https://www.rcsb.org/structure/pdb_00007vyf", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyh", "url": "https://www.rcsb.org/structure/pdb_00007vyh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyn", "url": "https://www.rcsb.org/structure/pdb_00007vyn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vz1", "url": "https://www.rcsb.org/structure/pdb_00007vz1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzv", "url": "https://www.rcsb.org/structure/pdb_00007vzv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzw", "url": "https://www.rcsb.org/structure/pdb_00007vzw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w00", "url": "https://www.rcsb.org/structure/pdb_00007w00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0h", "url": "https://www.rcsb.org/structure/pdb_00007w0h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0r", "url": "https://www.rcsb.org/structure/pdb_00007w0r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1o", "url": "https://www.rcsb.org/structure/pdb_00007w1o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1p", "url": "https://www.rcsb.org/structure/pdb_00007w1p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1t", "url": "https://www.rcsb.org/structure/pdb_00007w1t", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1u", "url": "https://www.rcsb.org/structure/pdb_00007w1u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1v", "url": "https://www.rcsb.org/structure/pdb_00007w1v", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1z", "url": "https://www.rcsb.org/structure/pdb_00007w1z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w20", "url": "https://www.rcsb.org/structure/pdb_00007w20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2k", "url": "https://www.rcsb.org/structure/pdb_00007w2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2l", "url": "https://www.rcsb.org/structure/pdb_00007w2l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2r", "url": "https://www.rcsb.org/structure/pdb_00007w2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2u", "url": "https://www.rcsb.org/structure/pdb_00007w2u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2y", "url": "https://www.rcsb.org/structure/pdb_00007w2y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w31", "url": "https://www.rcsb.org/structure/pdb_00007w31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w32", "url": "https://www.rcsb.org/structure/pdb_00007w32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w35", "url": "https://www.rcsb.org/structure/pdb_00007w35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4c", "url": "https://www.rcsb.org/structure/pdb_00007w4c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4d", "url": "https://www.rcsb.org/structure/pdb_00007w4d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4e", "url": "https://www.rcsb.org/structure/pdb_00007w4e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4f", "url": "https://www.rcsb.org/structure/pdb_00007w4f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4g", "url": "https://www.rcsb.org/structure/pdb_00007w4g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4j", "url": "https://www.rcsb.org/structure/pdb_00007w4j", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4k", "url": "https://www.rcsb.org/structure/pdb_00007w4k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4l", "url": "https://www.rcsb.org/structure/pdb_00007w4l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4m", "url": "https://www.rcsb.org/structure/pdb_00007w4m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4n", "url": "https://www.rcsb.org/structure/pdb_00007w4n", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4q", "url": "https://www.rcsb.org/structure/pdb_00007w4q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zo8", "url": "https://www.rcsb.org/structure/pdb_00008zo8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zou", "url": "https://www.rcsb.org/structure/pdb_00008zou", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zp8", "url": "https://www.rcsb.org/structure/pdb_00008zp8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsk", "url": "https://www.rcsb.org/structure/pdb_00008zsk", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsl", "url": "https://www.rcsb.org/structure/pdb_00008zsl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsm", "url": "https://www.rcsb.org/structure/pdb_00008zsm", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsn", "url": "https://www.rcsb.org/structure/pdb_00008zsn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zso", "url": "https://www.rcsb.org/structure/pdb_00008zso", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsq", "url": "https://www.rcsb.org/structure/pdb_00008zsq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsr", "url": "https://www.rcsb.org/structure/pdb_00008zsr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zxz", "url": "https://www.rcsb.org/structure/pdb_00008zxz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009buh", "url": "https://www.rcsb.org/structure/pdb_00009buh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bwd", "url": "https://www.rcsb.org/structure/pdb_00009bwd", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bxv", "url": "https://www.rcsb.org/structure/pdb_00009bxv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cd6", "url": "https://www.rcsb.org/structure/pdb_00009cd6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cdn", "url": "https://www.rcsb.org/structure/pdb_00009cdn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009ce2", "url": "https://www.rcsb.org/structure/pdb_00009ce2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6h", "url": "https://www.rcsb.org/structure/pdb_00009j6h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6w", "url": "https://www.rcsb.org/structure/pdb_00009j6w", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GPN", "url": "https://www.rcsb.org/structure/5GPN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.rcsb.org/structure/5GUP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.rcsb.org/structure/7V2C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.rcsb.org/structure/7V2D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.rcsb.org/structure/7V2E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.rcsb.org/structure/7V2F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.rcsb.org/structure/7V2H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.rcsb.org/structure/7V2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.rcsb.org/structure/7V2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.rcsb.org/structure/7V30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.rcsb.org/structure/7V31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.rcsb.org/structure/7V32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.rcsb.org/structure/7V33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.rcsb.org/structure/7V3M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VB7", "url": "https://www.rcsb.org/structure/7VB7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBN", "url": "https://www.rcsb.org/structure/7VBN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBZ", "url": "https://www.rcsb.org/structure/7VBZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VWJ", "url": "https://www.rcsb.org/structure/7VWJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXP", "url": "https://www.rcsb.org/structure/7VXP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY8", "url": "https://www.rcsb.org/structure/7VY8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYA", "url": "https://www.rcsb.org/structure/7VYA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYF", "url": "https://www.rcsb.org/structure/7VYF", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYH", "url": "https://www.rcsb.org/structure/7VYH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYN", "url": "https://www.rcsb.org/structure/7VYN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZ1", "url": "https://www.rcsb.org/structure/7VZ1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.rcsb.org/structure/7VZV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.rcsb.org/structure/7VZW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.rcsb.org/structure/7W00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.rcsb.org/structure/7W0H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.rcsb.org/structure/7W0R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.rcsb.org/structure/7W1O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.rcsb.org/structure/7W1P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.rcsb.org/structure/7W1T", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.rcsb.org/structure/7W1U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.rcsb.org/structure/7W1V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.rcsb.org/structure/7W1Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.rcsb.org/structure/7W20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.rcsb.org/structure/7W2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.rcsb.org/structure/7W2L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.rcsb.org/structure/7W2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.rcsb.org/structure/7W2U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.rcsb.org/structure/7W2Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.rcsb.org/structure/7W31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.rcsb.org/structure/7W32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.rcsb.org/structure/7W35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.rcsb.org/structure/7W4C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.rcsb.org/structure/7W4D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.rcsb.org/structure/7W4E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.rcsb.org/structure/7W4F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.rcsb.org/structure/7W4G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.rcsb.org/structure/7W4J", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.rcsb.org/structure/7W4K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.rcsb.org/structure/7W4L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.rcsb.org/structure/7W4M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.rcsb.org/structure/7W4N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.rcsb.org/structure/7W4Q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.rcsb.org/structure/8ZO8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.rcsb.org/structure/8ZOU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.rcsb.org/structure/8ZP8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.rcsb.org/structure/8ZSK", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.rcsb.org/structure/8ZSL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.rcsb.org/structure/8ZSM", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.rcsb.org/structure/8ZSN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.rcsb.org/structure/8ZSO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.rcsb.org/structure/8ZSQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.rcsb.org/structure/8ZSR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.rcsb.org/structure/8ZXZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.rcsb.org/structure/9BUH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.rcsb.org/structure/9BWD", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.rcsb.org/structure/9BXV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.rcsb.org/structure/9CD6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.rcsb.org/structure/9CDN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.rcsb.org/structure/9CE2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.rcsb.org/structure/9J6H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.rcsb.org/structure/9J6W", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF01370", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01370", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6799198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AE88", "url": "https://www.uniprot.org/uniprotkb/A0A287AE88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AE88-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AE88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL07-1", "url": "https://www.uniprot.org/uniprotkb/F1SL07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLLCMWGCLSGSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREWETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAAFPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIKDPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWTTRDKVERVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKTVNI", "length": 372, "header": "tr|F1SL07-1|F1SL07_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFA9 PE=1 SV=4 CANONICAL=F1SL07-1" }, "isoforms": [ { "isoform_ac": "A0A287AE88-1", "url": "https://www.uniprot.org/uniprotkb/F1SL07/entry#A0A287AE88-1", "sequence": { "sequence": "MAAAVHPRVVRAVPMSRSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREWETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAAFPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIKDPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWTTRDKVEREDGLGEQVSGRLGPSDWCASSICPHSCVGQVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKTVNI", "length": 407, "header": "tr|A0A287AE88-1|F1SL07_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFA9 PE=1 SV=2 CANONICAL=F1SL07-1" }, "locus": { "chromosome": "5", "start_pos": 65788616, "end_pos": 65760204, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040924.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040924.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042204.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042204.2" } ] } }, { "isoform_ac": "F1SL07-1", "url": "https://www.uniprot.org/uniprotkb/F1SL07/entry#F1SL07-1", "sequence": { "sequence": "MVLLCMWGCLSGSCLAAVATSVSYGPPQRQLHHALIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMEWNGKDKDSIRKVVEHSNVVINLVGREWETKNFDFEDVFVKIPHAIAQVSKEAGVEKLIHISHLNADIKSPSRYLRSKAVGEKEVRAAFPEATIIKPSDIFGREDRFLNYFASMRWFGGVPLISLGKETVKQPVYIVDVSKGIINAIKDPDAKGKTFAFVGPNRYLLFDLVQYIFAVAYRPFLPYPLPHFAYRWVGRLFEVSPFEPWTTRDKVERVHMSDMTLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLTSEMEDVKPAKTVNI", "length": 372, "header": "tr|F1SL07-1|F1SL07_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFA9 PE=1 SV=4 CANONICAL=F1SL07-1" }, "locus": { "chromosome": "5", "start_pos": 65782661, "end_pos": 65760204, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000782.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000782.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000766.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000766.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The architecture of the mammalian respirasome.", "journal": "Nature", "date": "2016", "authors": "Gu Jinke, Wu Meng, Guo Runyu, Yan Kaige, Lei Jianlin, Gao Ning, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "reference": [ { "type": "PubMed", "id": "27654917", "url": "https://glygen.org/publication/PubMed/27654917" } ] }, { "title": "Structure of Mammalian Respiratory Supercomplex I1III2IV1.", "journal": "Cell", "date": "2016", "authors": "Wu Meng, Gu Jinke, Guo Runyu, Huang Yushen, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "reference": [ { "type": "PubMed", "id": "27912063", "url": "https://glygen.org/publication/PubMed/27912063" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "The coupling mechanism of mammalian mitochondrial complex I.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Gu Jinke, Liu Tianya, Guo Runyu, Zhang Laixing, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "reference": [ { "type": "PubMed", "id": "35145322", "url": "https://glygen.org/publication/PubMed/35145322" } ] } ], "pathway": [ { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "F6NP87-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "gene_name": "ndufa9a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAVTLICRPAGVLPKLSGTCSPVLLAAAPVTVQQRKIHHAVVPRGKGGRSSISGLAATVFGATGFLGRYVVNRLGRMGSQVVIPYRCDQYDLMYLRPMGDLGQIIFMEWDPRNKESIQRAISHSNVVINLVGREWETSNYKYEDVFVSIPLQIARATREAGIKKFIHMSHLNADIRSPSKYLRNKAVGEEAVRNEFPDAIIMKPSELFGREDRFLNHFANMRWFGTAVPLIAMGKKTVKQPVHVVDVAKAIINAIQDPEANGKTYALVGPNRYLLHDLVEYLYSVAHRPFMPYPLPRPLYHLVARFFEMNPFEPWTTRDKVDRLHTSDLKYPDLPGLEDLGITPASIEQKAIETLRRHRRQRFFEAAVGEAKPSKTVNF", "length": 380 }, "evidence": [ { "id": "F1SL07", "url": "https://omabrowser.org/oma/group/F1SL07/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3GUK6-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "gene_name": "Ndufa9", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAAVPSRVLRSLPMSRPAIAAAATSVFRGPSHRQLHHAVIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDTYDTMHLRPMGDLGQLIFLEWDARDKDSIRRAVQHSNVVINLIGRDWETRNFDFEDIFVKIPQAIAQASKEAGVERLIHVSHLNASMKSSSRYLRNKAVGEKEVRRLFPEATIIRPSDIFGREDRFLNHFANIRWFIGVPLISLGFKTVKQPVYVVDVSKGIINAVKDPDARGKTFAFAGPNRYLLFHLVQYVYGMAHRTFIPYPLPHFAYRWIGKFFGMSPFEPWTTEDKVERMHISDVVVPDLPGLEDLGIEATPLELKAIEVLRRHRTYRWLSSEIEETKPAKTVNY", "length": 377 }, "evidence": [ { "id": "F1SL07", "url": "https://omabrowser.org/oma/group/F1SL07/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P34943-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "gene_name": "NDUFA9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAVHPRVVRVLPMSRSSVPALAASVFHSPPQRQLHHAVIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDSIRRAVEHSSVVINLVGREWETQNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNADIKSSSKYLRSKAVGEKEVRETFPEATIIKPAEIFGREDRFLNYFANIRWFGGVPLISLGKKTVKQPVYIVDVTKGIINAIKDPDARGKTFAFVGPSRYLLFDLVQYVFAVAHRPFLPYPLPHFAYRWIGRLFEISPFEPWTTRDKVERIHTTDKILPHLPGLEDLGVEATPLELKAIEVLRRHRTYRWLSSEIEDVQPAKTIPTSGP", "length": 380 }, "evidence": [ { "id": "F1SL07", "url": "https://omabrowser.org/oma/group/F1SL07/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q16795-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "gene_name": "NDUFA9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDAFPEAIIVKPSDIFGREDRFLNSFASMHRFGPIPLGSLGWKTVKQPVYVVDVSKGIVNAVKDPDANGKSFAFVGPSRYLLFHLVKYIFAVAHRLFLPFPLPLFAYRWVARVFEISPFEPWITRDKVERMHITDMKLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLSAEIEDVKPAKTVNI", "length": 377 }, "evidence": [ { "id": "F1SL07", "url": "https://omabrowser.org/oma/group/F1SL07/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q559Z0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "gene_name": "ndufa9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLKNLSKGFPSLINKRSFSTINENPLTRIHHGSRTQTTGLVATVFGATGFTGRYLVQLLARTGIQVVVPYRCEDEGFRDLKVLGELGQIIPVRFDIRDSESIERAISHSNIVINMAGRDYETRNFSLDDINVHAASRIADLSKNVEKYIHVSTLRASEDSPSHFSRSKAIGEKLTREIIPNCTVVRPSIIFGDEDKFINKWSKVSQNWPFIPRYNQQHKIQPLHCYDLASGILSILETPGTSGKVYEFAGDEVFTWDEFLDMIIDGTAQYSKLNIPVSNDFMKFISEHLLERFARNPNFIKDQIDYHNQDMTTTVGALTLKDLNVTTTPIQEKLIRLSRMYRPGKFFNAIANPQNK", "length": 356 }, "evidence": [ { "id": "F1SL07", "url": "https://omabrowser.org/oma/group/F1SL07/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9DC69-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "gene_name": "Ndufa9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAVRFRVVRALPMSRPAITAAATSVFCGSSHRQLHHAVIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDVYDIMHLRLMGDLGQLTFLEWDARDKDSIRKAVQHSNVVINLIGREWETRNFDFEDVFVNIPRAIAQASKEAGVERFIHVSHLNASMKSSSKSLRSKAVGEKEVRSVFPEAIIIRPSDIFGREDRFLNHFANYRWFLAVPLVSLGFKTVKQPVYVADVSKGIVNATKDPDAVGKTFAFTGPNRYLLFHLVKYIFGMTHRTFIPYPLPLFVYSWIGKLFGLSPFEPWTTKDKVERIHISDVMPTDLPGLEDLGVQPTPLELKSIEVLRRHRTYRWLSSEIEETKPAKTVNY", "length": 377 }, "evidence": [ { "id": "F1SL07", "url": "https://omabrowser.org/oma/group/F1SL07/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SK66-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MQVVSRRLVQRPLVGGASIYSSSSLRSLYGVSNHLNGTDNCRYSSSLATKGVGHLARKGTGGRSSVSGIVATVFGATGFLGRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQVVPMKFDPRDEDSIKAVMAKANVVINLIGREYETRNFSFEDANHHIAEKLALVAKEHGGIMRYIQVSCLGASVSSPSRMLRAKAAAEEAVLNALPEATIMRPATMIGTEDRILNPWSMFVKKYGFLPLIGGGTTKFQPVYVVDVAAAIVAALKDDGSSMGKTYELGGPDVFTTHELAEIMYDMIREWPRYVKLPFPIAKAMAAPRDFMVNKVPFPLPSPQIFNLDQINALTTDTLVSDNALKFQDLDLVPHKLKGYPVEFLIQYRKGGPNFGSTVSEKIPTDFYP", "length": 402 }, "evidence": [ { "id": "F1SL07", "url": "https://omabrowser.org/oma/group/F1SL07/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "NADH dehydrogenase activity", "id": "GO:0003954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003954", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" }, { "name": "nucleotide binding", "id": "GO:0000166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000166", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" }, { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "circadian rhythm", "id": "GO:0007623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007623", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" }, { "name": "ubiquinone biosynthetic process", "id": "GO:0006744", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006744", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" }, { "name": "respiratory electron transport chain", "id": "GO:0022904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022904", "evidence": [ { "database": "UniProtKB", "id": "F1SL07", "url": "https://www.uniprot.org/uniprotkb/F1SL07" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SL07-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 372, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SL07-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SL07" }, { "pdb_id": "7vyn", "pdb_chain": "j", "start_pos": 31, "end_pos": 372, "overlap": "0.92", "method": "Electron_Microscopy", "type": "experimental", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/7vyn.pdb", "url_external": "https://www.rcsb.org/structure/7vyn" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SL07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL07" }, { "id": "PF01370", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01370" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAD-dependent epimerase/dehydratase", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 255, "start_aa": "Thr", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPU1-1", "uniprot_ac": "F1SPU1", "uniprot_id": "F1SPU1_PIG", "mass": { "chemical_mass": 37098.0, "monoisotopic_mass": 37098.0 }, "refseq": { "ac": "XP_020947202", "name": "apolipoprotein L3-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947202" }, "gene_names": [ { "name": "LOC106510284", "type": "recommended", "evidence": [ { "id": "F1SPU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPU1" } ] }, { "name": "LOC106510284", "type": "synonym", "evidence": [ { "id": "XP_020947202", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947202" } ] } ], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F1SPU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPU1/entry#names_and_taxonomy" } ] }, { "name": "apolipoprotein L3-like", "type": "synonym", "evidence": [ { "id": "XP_020947202", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947202" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPU1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC106510284", "url": "https://www.uniprot.org/uniprotkb/F1SPU1", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000000148", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000148", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106510284", "url": "https://www.ncbi.nlm.nih.gov/gene/106510284", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008405", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008405", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106510284", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106510284", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NDHEAWE", "url": "https://omabrowser.org/oma/group/NDHEAWE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPU1", "url": "https://www.orthodb.org/?gene=F1SPU1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14096", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14096", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14096:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14096:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05461", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05461", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2168880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2168880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947202", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947202", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AGI6", "url": "https://www.uniprot.org/uniprotkb/A0A287AGI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPU1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTAGFSLALSATGLGLGVAASVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQELEKKLEELTRIYENLQ", "length": 339, "header": "tr|F1SPU1-1|F1SPU1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC106510284 PE=3 SV=3 CANONICAL=F1SPU1-1" }, "isoforms": [ { "isoform_ac": "A0A287AGI6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1/entry#A0A287AGI6-1", "sequence": { "sequence": "GLWLNPPPESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTAGFSLALSATGLGLGVAASVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQELEKKLEELTRIYENLQ", "length": 337, "header": "tr|A0A287AGI6-1|F1SPU1_PIG Computationally mapped isoform of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC106510284 PE=3 SV=1 CANONICAL=F1SPU1-1" }, "locus": { "chromosome": "5", "start_pos": 11515673, "end_pos": 11510318, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054045.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054045.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042964.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042964.2" } ] } }, { "isoform_ac": "F1SPU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1/entry#F1SPU1-1", "sequence": { "sequence": "MSSDDPRDHSESESFLEEVTEYFRNTVSREELQLLLTEGKAWEKFVTEADLSREEADALREYLKELETDLALEDKDSLLQDQLERTRFLQEFPRVKLEIEAQIGKLHALAAKVDKVHRDCTISNVVATSTGAASGILTVLGLALAPVTAGFSLALSATGLGLGVAASVTGVSASIVDKVNSSLAEREASRLMSTSFNKAEVISESLGKSTPQIVSLTKNFIQGLPRIGKNIRAIKLAKANPRLAANAKRFMTAGQVSVRNRRLVKKTFEGTVLAMTKNARIIGMATAGVALLMDVGFLVKESIHLQQGAKAESAERLRQQAQELEKKLEELTRIYENLQ", "length": 339, "header": "tr|F1SPU1-1|F1SPU1_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN=LOC106510284 PE=3 SV=3 CANONICAL=F1SPU1-1" }, "locus": { "chromosome": "5", "start_pos": 11516378, "end_pos": 11510318, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050902.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050902.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042686.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042686.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AGI6", "url": "https://www.uniprot.org/uniprotkb/A0A287AGI6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106510284", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106510284", "resource": "KEGG Pathway" }, { "id": "R-SSC-2168880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2168880", "resource": "Reactome", "description": "Scavenging of heme from plasma" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K7F8-1", "protein_name": "Apolipoprotein L7b like 1", "gene_name": "Apol7bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTGHAHEKKCFLETVFFYLLDTRSLEDLQLLLTEEESWRHFVAGVGLSREEEDALREALAEIFEDSDGEEEDKLQSDPQDKKERGTVRCLGDESSCCEWESPTKEEDALREALGGNTADSDTEDEDQLQNDKERFLEAYPQVRLELEKHIKKLHALADKVDKVHRDCTVSQVVASSSSAVSGVLTILGLALAPVTAGVSLALSATGMGLGAAAAVTSVSTSIVEKVSLASAEAEASKLVPTKDTMNRMKEVLEQSGPRLASLSTNSIQNIQAIQKNMNAIQLAKANPHLATNAKRLMTTGKTSTQTTGQVQKAFGGTALAMTKEARIIGAATVGLFLLMDVVRLVEDSKHLHEGAKSVSAAELRRQARDLEQKLQELNQVHDSLTQ", "length": 387 }, "evidence": [ { "id": "F1SPU1", "url": "https://omabrowser.org/oma/group/F1SPU1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B1AQP7-1", "protein_name": "Apolipoprotein L 7b", "gene_name": "Apol7b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGTPDRECFIETVAEYLLDVISTEDLQLLLTEEETWKHFVAEVDLSREEETALREALAEIFSDPDGEDEDELQNDLQDKNERKEEDALSEALGETVADTDAEDEEEIQNDPWHKERFLDAYPRVKLELEESIRMLHALADKVDKVHRDCTISRVVASSSSAVSGVLTILGLSLAPVTAGVSLALSATGLGLGAAAAVTSVSTSIVEKVSVVFAEAKASKLVPTNKDTMKGMKEVLDQSGPRLLFLSMNSFKKLKNIKNNIHAIKLTKANPSLVTNAKRLMTTGKTSTETTKQVKEAFGGTALAMTKGARIMGAATTGFFLLLDIVSLVGDSKHLHEGAKAESAAELRHQAQDLEQKLQELIRVHDSLIQ", "length": 369 }, "evidence": [ { "id": "F1SPU1", "url": "https://omabrowser.org/oma/group/F1SPU1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SPU1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SPU1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "F1SPU1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1" } ], "pmid": "" }, { "name": "lipoprotein metabolic process", "id": "GO:0042157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042157", "evidence": [ { "database": "UniProtKB", "id": "F1SPU1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "F1SPU1", "url": "https://www.uniprot.org/uniprotkb/F1SPU1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 180, "end_pos": 182 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLZ7-1", "uniprot_ac": "F1SLZ7", "uniprot_id": "F1SLZ7_PIG", "mass": { "chemical_mass": 56292.0, "monoisotopic_mass": 56292.0 }, "refseq": {}, "gene_names": [ { "name": "SLC39A5", "type": "recommended", "evidence": [ { "id": "F1SLZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ] } ], "protein_names": [ { "name": "Solute carrier family 39 member 5", "type": "synonym", "evidence": [ { "id": "F1SLZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC39A5", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7", "locus": { "chromosome": "5", "start_pos": 21637646, "end_pos": 21631924, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000385", "url": "https://www.ensembl.org/id/ENSSSCG00000000385" } ] } } ], "crossref": [ { "id": "F1SLZ7", "url": "https://alphafold.ebi.ac.uk/entry/F1SLZ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000385", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000385", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003689", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003689", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050799", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050799", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12191", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12191", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12191:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12191:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02535", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02535", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AJ39", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ39", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJ39-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ39-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKD9", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNC4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNC4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLZ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IMGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARLLHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDLEEPEAPAPPHGPAPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVHSALAVLLLSLPAPLSLLLLRLLGPRLLQPLLGFLGALAVGTLCGDALLHLLPHAQGGQHSGSGARPEEDLGPGLSVLGGLFLLFVLENMLGLLRRRGLGPKCCRQKRKDLRSPNLDPEDGTGMALQPLQAPPEPGAQGPREQDNQPPAAPAPPGHQGHSHGYQGSGGTNITWMVLLGDGLHNLTDGLAIGAAFSDGFSSGLSTTVAVFCHELPHELGDFAMLLRAGLPFRRLLLLSLVSGLLGLGGAALGVGLSLGPVPLTPWVFGVTAGVFLYVALVDMLPALLHPPEPLPALSVLLQGLGLLLGGGLMVTIALLEEQLWPLVSDG", "length": 542, "header": "tr|F1SLZ7-1|F1SLZ7_PIG Isoform 1 of Solute carrier family 39 member 5 OS=Sus scrofa OX=9823 GN=SLC39A5 PE=3 SV=3 CANONICAL=F1SLZ7-1" }, "isoforms": [ { "isoform_ac": "A0A287AJ39-1", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7/entry#A0A287AJ39-1", "sequence": { "sequence": "SLNPLDQSPPSDCAPQLYTSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDLEEPEAPAPPHGPAPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVHSALAVLLLSLPAPLSLLLLRLLGPRLLQPLLGFLGALAVGTLCGDALLHLLPHAQGGQHSGSGARPEEDLGPGLSVLGGLFLLFVLENMLGLLRRRGLGPKCCRQKRKDLRSPNLDPEDGTGMALQPLQAPPEPGAQGPREQDNQPPAAPAPPGHQGHSHGYQGSGGTNITWMVLLGDGLHNLTDGLAIGAAFSDGFSSGLSTTVAVFCHELPHELGDFAMLLRAGLPFRRLLLLSLVSGLLGLGGAALGVGLSLGPVPLTPWVFGVTAGVFLYVALVDMLPALLHPPEPLPALSVLLQGLGLLLGGGLMVTIALLEEQLWPLVSDG", "length": 498, "header": "tr|A0A287AJ39-1|F1SLZ7_PIG Computationally mapped isoform of Solute carrier family 39 member 5 OS=Sus scrofa OX=9823 GN=SLC39A5 PE=3 SV=1 CANONICAL=F1SLZ7-1" }, "locus": { "chromosome": "5", "start_pos": 21637530, "end_pos": 21631993, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037549.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037549.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043904.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043904.2" } ] } }, { "isoform_ac": "A0A287AKD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7/entry#A0A287AKD9-1", "sequence": { "sequence": "MGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARLLHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDLEEPEAPAPPHGPAPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCIRAPAPTPPGDLLSGARRAAQWIWRTARGGPGTRTVGAWWSLPALRPGEHARAFAASRARAKPGAQGPREQDNQPPAAPAPPGHQGHSHGYQGSGGTNITWMVLLGDGLHNLTDGLAIGAAFSDGFSSGLSTTVAVFCHELPHELGDFAMLLRAGLPFRRLLLLSLVSGLLGLGGAALGVGLSLGPVPLTPWVFGVTAGVFLYVALVDMLPALLHPPEPLPALSVLLQGLGLLLGGGLMVTIALLEEQLWPLVSDG", "length": 452, "header": "tr|A0A287AKD9-1|F1SLZ7_PIG Computationally mapped isoform of Solute carrier family 39 member 5 OS=Sus scrofa OX=9823 GN=SLC39A5 PE=3 SV=1 CANONICAL=F1SLZ7-1" }, "locus": { "chromosome": "5", "start_pos": 21637530, "end_pos": 21633093, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046133.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046133.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044361.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044361.2" } ] } }, { "isoform_ac": "A0A8W4FNC4-1", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7/entry#A0A8W4FNC4-1", "sequence": { "sequence": "MGAGDEWSLVPYVSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDLEEPEAPAPPHGPAPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVHSALAVLLLSLPAPLSLLLLRLLGPRLLQPLLGFLGALAVGTLCGDALLHLLPHAQGGQHSGSGARPEEDLGPGLSVLGGLFLLFVLENMLGLLRRRGLGPKCCRQKRKDLRSPNLDPEDGTGMALQPLQAPPEPGAQGPREQDNQPPAAPAPPGHQGHSHGYQGSGGTNITWMVLLGDGLHNLTDGLAIGAAFSDGFSSGLSTTVAVFCHELPHELGDFAMLLRAGLPFRRLLLLSLVSGLLGLGGAALGVGLSLGPVPLTPWVFGVTAGVFLYVALVDMLPALLHPPEPLPALSVLLQGLGLLLGGGLMVTIALLEEQLWPLVSDG", "length": 492, "header": "tr|A0A8W4FNC4-1|F1SLZ7_PIG Computationally mapped isoform of Solute carrier family 39 member 5 OS=Sus scrofa OX=9823 GN=SLC39A5 PE=3 SV=1 CANONICAL=F1SLZ7-1" }, "locus": { "chromosome": "5", "start_pos": 21637530, "end_pos": 21632272, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103517.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103517.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080997.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080997.1" } ] } }, { "isoform_ac": "F1SLZ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7/entry#F1SLZ7-1", "sequence": { "sequence": "IMGPPLSHLLAGLCVWVALGWVGGSAPNLGPAEQEQNHYLAQLFGLYGENGTLTAGGLARLLHSLGLGRVQALRLGHHGPPAGRATPPAEDNSTHRPQDPELSVDVWAGLPLDPSGWGDLEEPEAPAPPHGPAPSGLGLFHRLLLLDHSLADHLNEDCLNGSQLLVNFGLSPAAPLTPRQFALLCPALLYQIDSRVCIRAPAPTPPGDLLSALVHSALAVLLLSLPAPLSLLLLRLLGPRLLQPLLGFLGALAVGTLCGDALLHLLPHAQGGQHSGSGARPEEDLGPGLSVLGGLFLLFVLENMLGLLRRRGLGPKCCRQKRKDLRSPNLDPEDGTGMALQPLQAPPEPGAQGPREQDNQPPAAPAPPGHQGHSHGYQGSGGTNITWMVLLGDGLHNLTDGLAIGAAFSDGFSSGLSTTVAVFCHELPHELGDFAMLLRAGLPFRRLLLLSLVSGLLGLGGAALGVGLSLGPVPLTPWVFGVTAGVFLYVALVDMLPALLHPPEPLPALSVLLQGLGLLLGGGLMVTIALLEEQLWPLVSDG", "length": 542, "header": "tr|F1SLZ7-1|F1SLZ7_PIG Isoform 1 of Solute carrier family 39 member 5 OS=Sus scrofa OX=9823 GN=SLC39A5 PE=3 SV=3 CANONICAL=F1SLZ7-1" }, "locus": { "chromosome": "5", "start_pos": 21637530, "end_pos": 21633090, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000413.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000413.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000407.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000407.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 204, "start_aa": "Thr", "end_pos": 204, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr204", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FNC4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion transmembrane transporter activity", "id": "GO:0046873", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046873", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" }, { "name": "zinc ion transmembrane transporter activity", "id": "GO:0005385", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005385", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" }, { "name": "monoatomic cation:bicarbonate symporter activity", "id": "GO:0140410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140410", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "BMP signaling pathway", "id": "GO:0030509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030509", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" }, { "name": "intracellular monoatomic cation homeostasis", "id": "GO:0030003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030003", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" }, { "name": "zinc ion import across plasma membrane", "id": "GO:0071578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071578", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" }, { "name": "eye development", "id": "GO:0001654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001654", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ7", "url": "https://www.uniprot.org/uniprotkb/F1SLZ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLZ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 542, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLZ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLZ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 204 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 160, "end_pos": 162 }, { "start_pos": 384, "end_pos": 386 }, { "start_pos": 397, "end_pos": 399 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPK3-1", "uniprot_ac": "F1SPK3", "uniprot_id": "F1SPK3_PIG", "mass": { "chemical_mass": 144136.0, "monoisotopic_mass": 144136.0 }, "refseq": {}, "gene_names": [ { "name": "IFT122", "type": "recommended", "evidence": [ { "id": "F1SPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ] } ], "protein_names": [ { "name": "Intraflagellar transport protein 122 homolog", "type": "recommended", "evidence": [ { "id": "F1SPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK3/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 10", "type": "synonym", "evidence": [ { "id": "F1SPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "As a component of the IFT complex A (IFT-A), a complex required for retrograde ciliary transport and entry into cilia of G protein-coupled receptors (GPCRs), it is required in ciliogenesis and ciliary protein trafficking. Involved in cilia formation during neuronal patterning. Acts as a negative regulator of Shh signaling. Required to recruit TULP3 to primary cilia.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ32#function" }, { "database": "UniProtKB", "id": "ARBA00060184", "url": "https://www.uniprot.org/uniprotkb/ARBA00060184#function" }, { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3#function" }, { "database": "UniProtKB", "id": "A0A287AKG9", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG9#function" }, { "database": "UniProtKB", "id": "A0A286ZPE6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPE6#function" }, { "database": "UniProtKB", "id": "A0A8W4FBR3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBR3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IFT122", "url": "https://www.uniprot.org/uniprotkb/F1SPK3", "locus": { "chromosome": "13", "start_pos": 68902060, "end_pos": 68828719, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011589", "url": "https://www.ensembl.org/id/ENSSSCG00000011589" } ] } } ], "crossref": [ { "id": "F1SPK3", "url": "https://alphafold.ebi.ac.uk/entry/F1SPK3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011589", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011589", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056838", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056838", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057411", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057411", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12764", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12764", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12764:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12764:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23377", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23377", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23381", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23381", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25143", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25143", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25295", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25295", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5610787", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610787", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZPE6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZPE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKG9", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AKG9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AKG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ32-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ32-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBR3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP55", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP55-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP55-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPK3-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAVLTWRDKVEQSIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYTSWSDFYPHSVHLRYRPHNDSIQCVSYNPITHQLASCSSSDFGLWSPEQKSVSKHKSSSKITCCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSSRWENFWMNREKEDAEEVLVNRYFQEIPSVPKSAVYSSQGSEAEEEQPEDKDDGPRDDNSEEHNDILAVADWGQKLSFYQLSGKQIGKDRSLDFDPCCISYFSKGEYILLGGSDKQVSLFTKDGVQLGTVGEHNSWVWTCKAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDNMTDVIVQHLITEQKVRIKCKELVKKIAIYKNRLAVQLPEKIVIYELYSDDSSDMHYRVKEKIVRKFECNLLVVCANHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDMCLVYDIHTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSAPMYQYLDRKMFREAYQIACLGVTDTDWRELAMEALEGLEFETAKKAFTRVQDFRYLQLISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHESLALDMYTDLRMFEYAKDFLGSGDPKETRMLITKQADWARNINEPKAAVEMYISAGEHSKAIEISGDHGWVDTLIDIARKLDKAEREPLLMCAHYFKKLDNPGYAAETYLKIGDLKSLVQLHVETQRWDEAFALGEKYPEFKDDIYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRVLEQLTHNAVVESRFNDAAYYYWMLSMQCLDIAQDFSQKDVMLGKFHHFQHLAELYHGYHAIHRYTEEPFSFHLPETLFNISRFLLHSLTKDTPLGISKVNTLFTLAKQSKALGAYKLARHAYDKLQGLQIPTRFQKSIELGSLTIRSKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFVFSASSYEVLHLVEFYLEEGITDEEAVSLIDLEPRHKRENKWQEIRSNDSQTLRLDETVDPMGDDDPFTAKLSFEQGGSEFVPVVVNRSVLRSMSRRDVLIKRWPPPLQWQYFRSLLPDASITMCPSCFQMFHSEDYELLVLQHTCCPYCRRRIDDSSP", "length": 1256, "header": "tr|F1SPK3-1|F1SPK3_PIG Isoform 1 of Intraflagellar transport protein 122 homolog OS=Sus scrofa OX=9823 GN=IFT122 PE=1 SV=5 CANONICAL=F1SPK3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPE6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK3/entry#A0A286ZPE6-1", "sequence": { "sequence": "EGVVVEWDFIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYTHNDSIQCVSYNPITHQLASCSSSDFGLWSPEQKSVSKHKSSSKITCCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREEHNDILAVADWGQKLSFYQLSGKQIGKDRSLDFDPCCISYFSKGEYILLGGSDKQVSLFTKDGVQLGTVGEHNSWVWTCKAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDNMTDVIVQHLITEQKVRIKCKELVKKIAIYKNRLAVQLPEKIVIYELYSDDSSDMHYRVKEKIVRKFECNLLVVCANHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDMCLVYDIHTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSAPMYQYLDRKMFREAYQIACLGVTDTDWRELAMEALEGLEFETAKKAFTRVQDFRYLQLISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHESLALDMYTDLRMFEYAKDFLGSGDPKETRMLITKQADWARNINEPKAAVEMYISAGEHSKAIEISGDHGWVDTLIDIARKLDKAEREPLLMCAHYFKKLDNPGYAAETYLKIGDLKSLVQLHVETQRWDEAFALGEKYPEFKDDIYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRVLEQLTHNAVVESRFNDAAYYYWMLSMQCLDIAQDFSQKDVMLGKFHHFQHLAELYHGYHAIHRYTEEPFSFHLPETLFNISRFLLHSLTKDTPLGISKVNTLFTLAKQSKALGAYKLARHAYDKLQGLQIPTRFQKSIELGSLTIRSKPFHDSEVRALPLNPEASPDTLSIWPSSHCSPPPGGPALTSS", "length": 1022, "header": "tr|A0A286ZPE6-1|F1SPK3_PIG Computationally mapped isoform of Intraflagellar transport protein 122 homolog OS=Sus scrofa OX=9823 GN=IFT122 PE=1 SV=3 CANONICAL=F1SPK3-1" }, "locus": { "chromosome": "13", "start_pos": 68897788, "end_pos": 68839935, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063511.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063511.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033345.3", "url": "https://www.ensembl.org/id/ENSSSCP00000033345.3" } ] } }, { "isoform_ac": "A0A287AKG9-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK3/entry#A0A287AKG9-1", "sequence": { "sequence": "MYATWIICIFVSLFCQVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYTHNDSIQCVSYNPITHQLASCSSSDFGLWSPEQKSVSKHKSSSKITCCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREEHNDILAVADWGQKLSFYQLSGKQIGKDRSLDFDPCCISYFSKGEYILLGGSDKQVSLFTKDGVQLGTVGEHNSWVWTCKAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDNMTDVIVQHLITEQKVRIKCKELVKKIAIYKNRLAVQLPEKIVIYELYSDDSSDMHYRVKEKIVRKFECNLLVVCANHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDMCLVYDIHTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSAPMYQYLDRKMFREAYQIACLGVTDTDWRELAMEALEGLEFETAKKAFTRVQDFRYLQLISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHESLALDMYTDLRMFEYAKDFLGSGDPKETRMLITKQADWARNINEPKAAVEMYISAGEHSKAIEISGDHGWVDTLIDIARKLDKAEREPLLMCAHYFKKLDNPGYAAETYLKIGDLKSLVQLHVETQRWDEAFALGEKYPEFKDDIYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRVLEQLTHNAVVESRFNDAAYYYWMLSMQCLDIAQDFSQKDVMLGKFHHFQHLAELYHGYHAIHRYTEEPFSFHLPETLFNISRFLLHSLTKDTPLGISKVNTLFTLAKQSKALGAYKLARHAYDKLQGLQIPTRFQKSIELGSLTIRSKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFVFSASSYEVLHLVEFYLEEGITDEEAVSLIDLEHRDTSVRTSGKRSGAMVSWVPAAPCVHQLSTGYVQSRRWGVGLGVGWARWQGQGRPLCMIERSMWWQVRGQKWAESWPGCKVPEGTVRVHRLEETCGGPST", "length": 1136, "header": "tr|A0A287AKG9-1|F1SPK3_PIG Computationally mapped isoform of Intraflagellar transport protein 122 homolog OS=Sus scrofa OX=9823 GN=IFT122 PE=1 SV=2 CANONICAL=F1SPK3-1" }, "locus": { "chromosome": "13", "start_pos": 68899342, "end_pos": 68841455, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047035.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047035.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044520.3", "url": "https://www.ensembl.org/id/ENSSSCP00000044520.3" } ] } }, { "isoform_ac": "A0A5G2QZ32-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK3/entry#A0A5G2QZ32-1", "sequence": { "sequence": "MRAVLTWRDKVEQSIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGLWSPEQKSVSKHKSSSKITCCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREEHNDILAVADWGQKLSFYQLSGKQIGKDRSLDFDPCCISYFSKGEYILLGGSDKQVSLFTKDGVQLGTVGEHNSWVWTCKAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDNMTDVIVQHLITEQKVRIKCKELVKKIAIYKNRLAVQLPEKIVIYELYSDDSSDMHYRVKEKIVRKFECNLLVVCANHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDMCLVYDIHTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSAPMYQYLDRKMFREAYQIACLGVTDTDWRELAMEALEGLEFETAKKAFTRVQDFRYLQLISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHESLALDMYTDLRMFEYAKDFLGSGDPKETRMLITKQADWARNINEPKAAVEMYISAGEHSKAIEISGDHGWVDTLIDIARKLDKAEREPLLMCAHYFKKLDNPGYAAETYLKIGDLKSLVQLHVETQRWDEAFALGEKYPEFKDDIYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRVLEQLTHNAVVESRFNDAAYYYWMLSMQCLDIAQEDFSQKDVMLGKFHHFQHLAELYHGYHAIHRYTEEPFSFHLPETLFNISRFLLHSLTKDTPLGISKVNTLFTLAKQSKALGAYKLARHAYDKLQGLQIPTRFQKSIELGSLTIRSKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFVFSASSYEVLHLVEFYLEEGITDEEAVSLIDLEPRHKRENKWQEIRSNDSQTLRLDETVDPMGDDDPFTAKLSFEQGGSEFVPVVVNRSVLRSMSRRDVLIKRWPPPLQWQYFRSLLPDASITMCPSCFQMFHSEDYELLVLQHTCCPYCRRRIDDSSP", "length": 1130, "header": "tr|A0A5G2QZ32-1|F1SPK3_PIG Computationally mapped isoform of Intraflagellar transport protein 122 homolog OS=Sus scrofa OX=9823 GN=IFT122 PE=1 SV=2 CANONICAL=F1SPK3-1" }, "locus": { "chromosome": "13", "start_pos": 68901702, "end_pos": 68828830, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067409.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067409.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069403.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069403.2" } ] } }, { "isoform_ac": "A0A8W4FBR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK3/entry#A0A8W4FBR3-1", "sequence": { "sequence": "EGVVVEWDFIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYTHNDSIQCVSYNPITHQLASCSSSDFGLWSPEQKSVSKHKSSSKITCCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSSRWENFWMNREKEDAEEVLVNRYFQEIPSVPKSAVYSSQGSEAEEEQPEDKDDGPRDDNSEEHNDILAVADWGQKLSFYQLSGKQIGKDRSLDFDPCCISYFSKGEYILLGGSDKQVSLFTKDGVQLGTVGEHNSWVWTCKAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDNMTDVIVQHLITEQKVRIKCKELVKKIAIYKNRLAVQLPEKIVIYELYSDDSSDMHYRVKEKIVRKFECNLLVVCANHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDMCLVYDIHTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSAPMYQYLDRKMFREAYQIACLGVTDTDWRELAMEALEGLEFETAKKAFTRVQDFRYLQLISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHESLALDMYTDLRMFEYAKDFLGSGDPKETRMLITKQADWARNINEPKAAVEMYISAGEHSKAIEISGDHGWVDTLIDIARKLDKAEREPLLMCAHYFKKLDNPGYAAETYLKIGDLKSLVQLHVETQRWDEAFALGEKYPEFKDDIYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRVLEQLTHNAVVESRFNDAAYYYWMLSMQCLDIAQDFSQKDVMLGKFHHFQHLAELYHGYHAIHRYTEEPFSFHLPETLFNISRFLLHSLTKDTPLGISKVNTLFTLAKQSKALGAYKLARHAYDKLQGLQIPTRFQKSIELGSLTIRSKPFHDSEVRPLCKPPAPPFVCPAEVLHLVEFYLEEGITDEEAVSLIDLEHRDTSVRTSGKRSGAMVSWVPAAPCVHQLSTGYVQSRRWGVGLGVGWARWQGQGRPLCMIERSMWWQVRGQKWAESWPGCKVPEGTVRVHRLEETCGGPST", "length": 1189, "header": "tr|A0A8W4FBR3-1|F1SPK3_PIG Computationally mapped isoform of Intraflagellar transport protein 122 homolog OS=Sus scrofa OX=9823 GN=IFT122 PE=1 SV=1 CANONICAL=F1SPK3-1" }, "locus": { "chromosome": "13", "start_pos": 68899342, "end_pos": 68839935, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092928.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092928.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075736.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075736.1" } ] } }, { "isoform_ac": "A0A8W4FP55-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK3/entry#A0A8W4FP55-1", "sequence": { "sequence": "MRAVLTWRDKVEQSIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDVFCTEGLWSPEQKSVSKHKSSSKITCCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREEHNDILAVADWGQKLSFYQLSGKQIGKDRSLDFDPCCISYFSKGEYILLGGSDKQVSLFTKDGVQLGTVGEHNSWVWTCKAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDNMTDVIVQHLITEQKVRIKCKELVKKIAIYKNRLAVQLPEKIVIYELYSDDSSDMHYRVKEKIVRKFECNLLVVCANHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDMCLVYDIHTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSAPMYQYLDRKMFREAYQIACLGVTDTDWRELAMEALEGLEFETAKKERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHESLALDMYTDLRMFEYAKDFLGSGDPKETRMLITKQADWARNINEPKAAVEMYISAGEHSKAIEISGDHGWVDTLIDIARKLDKAEREPLLMCAHYFKKLDNPGYAAETYLKIGDLKSLVQLHVETQRWDEAFALGEKYPEFKDDIYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRVLEQLTHNAVVESRFNDAAYYYWMLSMQCLDIAQEDFSQKDVMLGKFHHFQHLAELYHGYHAIHRYTEEPFSFHLPETLFNISRFLLHSLTKDTPLGISKVNTLFTLAKQSKALGAYKLARHAYDKLQGLQIPTRFQKSIELGSLTIRSKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFVFSASSYEVLHLVEFYLEEGITDEEAVSLIDLEPRHKRENKWQEIRSNDSQTLRLDETVDPMGDDDPFTAKLSFEQGGSEFVPVVVNRSVLRSMSRRDVLIKRWPPPLQWQYFRSLLPDASITMCPSCFQMFHSEDYELLVLQHTCCPYCRRRIDDSSP", "length": 1117, "header": "tr|A0A8W4FP55-1|F1SPK3_PIG Computationally mapped isoform of Intraflagellar transport protein 122 homolog OS=Sus scrofa OX=9823 GN=IFT122 PE=1 SV=1 CANONICAL=F1SPK3-1" }, "locus": { "chromosome": "13", "start_pos": 68901702, "end_pos": 68828830, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095305.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095305.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081267.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081267.1" } ] } }, { "isoform_ac": "F1SPK3-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK3/entry#F1SPK3-1", "sequence": { "sequence": "MRAVLTWRDKVEQSIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYTSWSDFYPHSVHLRYRPHNDSIQCVSYNPITHQLASCSSSDFGLWSPEQKSVSKHKSSSKITCCSWTNDGQYLALGMFNGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSSRWENFWMNREKEDAEEVLVNRYFQEIPSVPKSAVYSSQGSEAEEEQPEDKDDGPRDDNSEEHNDILAVADWGQKLSFYQLSGKQIGKDRSLDFDPCCISYFSKGEYILLGGSDKQVSLFTKDGVQLGTVGEHNSWVWTCKAKPDSNYVVVGCQDGTISFYQLIFSTVHGLYKDRYAYRDNMTDVIVQHLITEQKVRIKCKELVKKIAIYKNRLAVQLPEKIVIYELYSDDSSDMHYRVKEKIVRKFECNLLVVCANHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVIGGPPGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDMCLVYDIHTKELLFQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSAPMYQYLDRKMFREAYQIACLGVTDTDWRELAMEALEGLEFETAKKAFTRVQDFRYLQLISSIEERKKRGETNNDLFLADVFSYQGKFHEAAKLYKRSGHESLALDMYTDLRMFEYAKDFLGSGDPKETRMLITKQADWARNINEPKAAVEMYISAGEHSKAIEISGDHGWVDTLIDIARKLDKAEREPLLMCAHYFKKLDNPGYAAETYLKIGDLKSLVQLHVETQRWDEAFALGEKYPEFKDDIYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRVLEQLTHNAVVESRFNDAAYYYWMLSMQCLDIAQDFSQKDVMLGKFHHFQHLAELYHGYHAIHRYTEEPFSFHLPETLFNISRFLLHSLTKDTPLGISKVNTLFTLAKQSKALGAYKLARHAYDKLQGLQIPTRFQKSIELGSLTIRSKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFVFSASSYEVLHLVEFYLEEGITDEEAVSLIDLEPRHKRENKWQEIRSNDSQTLRLDETVDPMGDDDPFTAKLSFEQGGSEFVPVVVNRSVLRSMSRRDVLIKRWPPPLQWQYFRSLLPDASITMCPSCFQMFHSEDYELLVLQHTCCPYCRRRIDDSSP", "length": 1256, "header": "tr|F1SPK3-1|F1SPK3_PIG Isoform 1 of Intraflagellar transport protein 122 homolog OS=Sus scrofa OX=9823 GN=IFT122 PE=1 SV=5 CANONICAL=F1SPK3-1" }, "locus": { "chromosome": "13", "start_pos": 68901702, "end_pos": 68828830, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012685.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012685.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012352.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012352.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZ32", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ32" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5610787", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610787", "resource": "Reactome", "description": "Hedgehog 'off' state" }, { "id": "R-SSC-5620924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620924", "resource": "Reactome", "description": "Intraflagellar transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "intraciliary transport particle A", "id": "GO:0030991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030991", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "non-motile cilium", "id": "GO:0097730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097730", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "ciliary transition zone", "id": "GO:0035869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035869", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 11, "go_terms": [ { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "heart development", "id": "GO:0007507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007507", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "establishment of protein localization", "id": "GO:0045184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045184", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "regulation of smoothened signaling pathway", "id": "GO:0008589", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008589", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "camera-type eye morphogenesis", "id": "GO:0048593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048593", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "intraciliary transport", "id": "GO:0042073", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042073", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "protein localization to cilium", "id": "GO:0061512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061512", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "non-motile cilium assembly", "id": "GO:1905515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905515", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "protein localization to non-motile cilium", "id": "GO:0097499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097499", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" }, { "name": "intraciliary retrograde transport", "id": "GO:0035721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035721", "evidence": [ { "database": "UniProtKB", "id": "F1SPK3", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1145, "end_pos": 1147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1184, "end_pos": 1186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 614, "end_pos": 616, "annotation": "n_glycosylation_sequon" }, { "start_pos": 992, "end_pos": 994, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPK3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1256, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPK3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPK3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" }, { "id": "PF23377", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23377" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IFT122 second beta-propeller", "eco_id": "ECO_0000259", "start_pos": 372, "end_pos": 626, "start_aa": "His", "end_aa": "Met", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" }, { "id": "PF25144", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25144" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IFT122 zinc ribbon", "eco_id": "ECO_0000259", "start_pos": 1066, "end_pos": 1110, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" }, { "id": "PF23381", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23381" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IFT122/SMU1 beta-propeller", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 204, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK3" }, { "id": "PF25295", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25295" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Intraflagellar transport protein 122 homolog TPR", "eco_id": "ECO_0000259", "start_pos": 633, "end_pos": 1013, "start_aa": "Gln", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 1145, "end_pos": 1147 }, { "start_pos": 1184, "end_pos": 1186 }, { "start_pos": 384, "end_pos": 386 }, { "start_pos": 614, "end_pos": 616 }, { "start_pos": 992, "end_pos": 994 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHL3-1", "uniprot_ac": "F1SHL3", "uniprot_id": "F1SHL3_PIG", "mass": { "chemical_mass": 86185.0, "monoisotopic_mass": 86185.0 }, "refseq": { "ac": "XP_005666247", "name": "protein transport protein Sec23A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666247" }, "gene_names": [ { "name": "SEC23A", "type": "recommended", "evidence": [ { "id": "F1SHL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ] }, { "name": "SEC23A", "type": "synonym", "evidence": [ { "id": "XP_005666247", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666247" } ] } ], "protein_names": [ { "name": "Protein transport protein SEC23", "type": "recommended", "evidence": [ { "id": "F1SHL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL3/entry#names_and_taxonomy" } ] }, { "name": "protein transport protein Sec23A", "type": "synonym", "evidence": [ { "id": "XP_005666247", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666247" } ] } ], "function": [ { "annotation": "Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP11", "url": "https://www.uniprot.org/uniprotkb/A0A287AP11#function" }, { "database": "UniProtKB", "id": "RU365030", "url": "https://www.uniprot.org/uniprotkb/RU365030#function" }, { "database": "UniProtKB", "id": "A0A5G2QY85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY85#function" }, { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEC23A", "url": "https://www.uniprot.org/uniprotkb/F1SHL3", "locus": {} } ], "crossref": [ { "id": "F1SHL3", "url": "https://alphafold.ebi.ac.uk/entry/F1SHL3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001934", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001934", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01478", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01478", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11287", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11287", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155766", "url": "https://www.ncbi.nlm.nih.gov/gene/100155766", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006900", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006900", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155766", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155766", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FPPHYAE", "url": "https://omabrowser.org/oma/group/FPPHYAE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHL3", "url": "https://www.orthodb.org/?gene=F1SHL3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11141:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11141:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00626", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00626", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04811", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04811", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04815", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04815", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2132295", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5694530", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983170", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983170", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005666247", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666247", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AP11", "url": "https://www.uniprot.org/uniprotkb/A0A287AP11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP11-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY85", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QY85-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QY85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHL3-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 765, "header": "tr|F1SHL3-1|F1SHL3_PIG Isoform 1 of Protein transport protein SEC23 OS=Sus scrofa OX=9823 GN=SEC23A PE=1 SV=1 CANONICAL=F1SHL3-1" }, "isoforms": [ { "isoform_ac": "A0A287AP11-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL3/entry#A0A287AP11-1", "sequence": { "sequence": "MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 686, "header": "tr|A0A287AP11-1|F1SHL3_PIG Computationally mapped isoform of Protein transport protein SEC23 OS=Sus scrofa OX=9823 GN=SEC23A PE=1 SV=2 CANONICAL=F1SHL3-1" }, "locus": { "chromosome": "7", "start_pos": 61182891, "end_pos": 61119611, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044429.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044429.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045752.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045752.2" } ] } }, { "isoform_ac": "A0A5G2QY85-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL3/entry#A0A5G2QY85-1", "sequence": { "sequence": "MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 732, "header": "tr|A0A5G2QY85-1|F1SHL3_PIG Computationally mapped isoform of Protein transport protein SEC23 OS=Sus scrofa OX=9823 GN=SEC23A PE=1 SV=1 CANONICAL=F1SHL3-1" }, "locus": { "chromosome": "7", "start_pos": 61182891, "end_pos": 61119611, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086408.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086408.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069843.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069843.1" } ] } }, { "isoform_ac": "F1SHL3-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL3/entry#F1SHL3-1", "sequence": { "sequence": "MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 765, "header": "tr|F1SHL3-1|F1SHL3_PIG Isoform 1 of Protein transport protein SEC23 OS=Sus scrofa OX=9823 GN=SEC23A PE=1 SV=1 CANONICAL=F1SHL3-1" }, "locus": { "chromosome": "7", "start_pos": 61182891, "end_pos": 61119611, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002166.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002166.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002115.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002115.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AP11", "url": "https://www.uniprot.org/uniprotkb/A0A287AP11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155766", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155766", "resource": "KEGG Pathway" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" }, { "id": "R-SSC-2132295", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "resource": "Reactome", "description": "MHC class II antigen presentation" }, { "id": "R-SSC-5694530", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "resource": "Reactome", "description": "Cargo concentration in the ER" }, { "id": "R-SSC-983170", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983170", "resource": "Reactome", "description": "Antigen Presentation: Folding, assembly and peptide loading of class I MHC" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4K5Z8-1", "protein_name": "Protein transport protein SEC23", "gene_name": "Sec23", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTTYEEFIQQNEDRDGVRLTWNVWPSSRIEASRLVVPLACLYQPLKERPDLPPIQYEPVLCTRSNCRAILNPLCQVDYRAKLWVCNFCFQRNPFPPQYAAISEQHQPAELIPGFSTIEYTITRAPTMPPVFIFLVDTCMDEEELDALKDSLQMSLSLLPTNALVGLITFGKMIQVHELGAEGCSKSYVFRGTKDLTAKQVQDMLGIGRGAAPGPQQQQHLPGQPAGAAAPVPPAHRFLQPIGQCDAALGDLLSELQRDPWPVPQGKRYLRSTGAALSIAVGLLECTYPNTGGRIMTFVGGPCSQGPGQVVDDELKHPIRSHHDIHKDNVRFMKKAIKHYDALALRAATNGHSVDIYSCALDQTGLLEMKQLCNSTGGHMVMGDSFNSSLFKQTFQRVFARDGRNDLKMAFNATLEVKCSRELKISGGIGSCVSLNVKSPSVSDVEIGMGNTVQWKLCTLNPSSTVAYFFEVVNQHAAPIPQGGRGCIQFITQYQHPSGQRRIRVTTLARNWADATSNVHHISAGFDQEAAAVLMARMVVYRAETDEGPDILRWVDRQLIRLCQKFGEYSKDDPNSFRLSQNFSLFPQFMYHLRRSQFLQVFNNSPDETTFYRHMLMREDLTQSLIMIQPILYSYSFNGPPEPVLLDTASIQADRILLMDTFFQILIYHGETIAQWRALKYQDMPEYENFKQLLQAPVDDAQEILQTRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAYGQAPIGQVTVDGGAPVLTDDVSLQLFMEHLKKLAVSTTT", "length": 781 }, "evidence": [ { "id": "F1SHL3", "url": "https://omabrowser.org/oma/group/F1SHL3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A1D5P0E2-1", "protein_name": "Protein transport protein SEC23", "gene_name": "SEC23A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTTFLEFIQQNEDRDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISEMNQPAELLPQFSSIEYVVQRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLTKVAVSQVGRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKLPIRSWHDIEKDNAKYVKKGTKHFEALANRAAANGHVVDIYACALDQTGLLEMKCCPNYTGGYMVMGDSFNTSLFKQTFQRVFTKDMQGQFKMGFGGTLEIKTSREVKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLNPTTTLALYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTVARNWADAQTQIQNIAASFDQEAAAILMARLAVYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMVQPILYAYSFNGPPEPVLLDSSSILPDRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFHHLLQAPIDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 765 }, "evidence": [ { "id": "F1SHL3", "url": "https://omabrowser.org/oma/group/F1SHL3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B5DFC3-1", "protein_name": "Protein transport protein SEC23", "gene_name": "Sec23a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCIEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDIHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAVQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPNSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 765 }, "evidence": [ { "id": "F1SHL3", "url": "https://omabrowser.org/oma/group/F1SHL3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MVW5-1", "protein_name": "Protein transport protein SEC23", "gene_name": "SEC23A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAIQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 765 }, "evidence": [ { "id": "F1SHL3", "url": "https://omabrowser.org/oma/group/F1SHL3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HGF9-1", "protein_name": "Protein transport protein SEC23", "gene_name": "Sec23a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCIEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDIHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAMYFEVVNQHNAPIPQGGRGAVQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPSSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 765 }, "evidence": [ { "id": "F1SHL3", "url": "https://omabrowser.org/oma/group/F1SHL3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P15303-1", "protein_name": "Protein transport protein SEC23", "gene_name": "SEC23", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDFETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNKPVTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDLSSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEFKLNQLLENLSPDQWSVPAGHRPLRATGSALNIASLLLQGCYKNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNRIRVTTVANQLLPFGTPAIAASFDQEAAAVLMARIAVHKAETDDGADVIRWLDRTLIKLCQKYADYNKDDPQSFRLAPNFSLYPQFTYYLRRSQFLSVFNNSPDETAFYRHIFTREDTTNSLIMIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQYADFKALLEEPKLEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNYQDMARGGSTIVLTDDVSLQNFMTHLQQVAVSGQA", "length": 768 }, "evidence": [ { "id": "F1SHL3", "url": "https://omabrowser.org/oma/group/F1SHL3/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q01405-1", "protein_name": "Protein transport protein Sec23A", "gene_name": "Sec23a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPDLPPIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISELNQPAELLPQFSSIEYVVLRGPQMPLIFLYVVDTCIEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVPQGKRPLRSSGVALSIAVGLLECTFPNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDIHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAPIPQGGRGAVQFVTQYQHSSGQRRIRVTTIARNWADAQTQIQNIAASFDQEAAAILMARLAIYRAETEEGPDVLRWLDRQLIRLCQKFGEYHKDDPNSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESSYYRHHFMRQDLTQSLIMIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPEYENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 765 }, "evidence": [ { "id": "F1SHL3", "url": "https://omabrowser.org/oma/group/F1SHL3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54T59-1", "protein_name": "Protein transport protein SEC23", "gene_name": "sec23", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFDQSEDRDGVRFSWNVWPTSRVEATKNLLVPLGCLYTPLHQSPEITQVPYPPLRCKGICNAILNPYCTIAPPYKTWVCPFCLQHNQFPPHYAGISDLNRPAELLPHVTTIEYQLPTAETPLPIYLFVVDVCVPDDELQSLTDSLTMSLSLIPENSYVGLITFGSMVQLYELGFTSCPKSYVFRGDPPTNTFKIANLMQKVGSPETMNLQSKRFLVPVSECEFHLTSILEEIQKDPCRVASDKRPLRATGMAFSVANALLSTVASNMGGRIMAFIGGPATTGPGLVVSEDLREPIRSHHEVIKGKTKYTSKAYQFYKSIGERSVASGHAIDIFSCSLDQVGLYEMREMVKLTGGYMVLADSFDHPMFTQSFQKIFTREDNAFKMGYNAEVQVCTSMSLKVCGAIGHMSSRNNKTSCVGENEIGIGGTSSWKVCALDQNSTFAFYFEIANTQQNAPEQLGLVQFITSYQNSLGKQILRVSTIRREWVQHTMEQQQNITMLANGFDQETSAVLMARLAVFKAETEELPDITRWLDKMLIKLVSKYADYRRDDPTSFKLVSNFSIYPHFMFHLRRSSFLQVFNSSPDESSFYRFMLNRENVSNSLIMIQPTLEKYSFSGPPHPEVLSASSISIDSILLLDTFFHVLIFHGETIAQWRKAGYDKDPQHQNFRDLLQAPRDDAAHILKERFPYPRYIVCDQHSGEARFLLATIDPNITHTSNTPQDPSKGEIVFTDDVNLHVFLEHLKKFAVQS", "length": 750 }, "evidence": [ { "id": "F1SHL3", "url": "https://omabrowser.org/oma/group/F1SHL3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7SZE5-1", "protein_name": "Protein transport protein Sec23A", "gene_name": "sec23a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MATFQEFIQQNEDRDGVRFSWNVWPSSRLEATRMVVPVASLFTPLKERPDLPPIQYEPVLCSRATCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPTYAGISEVNQPAELLPQFSTIEYVVQRGPQMPLNFLYVVDTCMEDDDLQALKESLQMSLSLLPPTALVGLITFGRMVQVHELGCEGISKSYVFRGTKDLNAKQLQEMLGLTKPAAAQAGRGPQQPQVPPSNRFLQPVQKIDMNLTDLLGELQRDPWPVTQGKRPLRSLGVALSIAVGLLECTFPNTGARIMAFIGGPATQGPGMVVGDELKTPIRSWHDIEKDNAKFMKKATKHYEALANRAAANGHIIDIYACALDQTGLLEMKCCTNYTGGYMVMADSFNTSLFKQTFQRVFTKDVQGCFKMALAGTLEIKTSREIKISGAIGPCVSLNAKGPCVSENEMGTGGTSQWKICGLDPNTTLGFYFEVVNQHNAPIPQGGRGAIQYVTQYQHSSGQRRIRVTTIARNWADAQSQIQSIAASFDQEAAAILMARLAVYKAETEEGPDVLRWLDRQLIRLCQKFGDYHKEDPNSFRFSETFSLYPQFMFHLRRSPFLQVFNNSPDESTYYRHQFMRQDLTQSLIMVQPILYAYSFNGPPEPVLLDSSSILPDRILLMDTFFQILIYHGETVSQWRKAGYQDMPEYENFRHLLQAPVDDAQELLHTRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQESGAPILTDDVSLQVFMDHLKKLAVSSAA", "length": 765 }, "evidence": [ { "id": "F1SHL3", "url": "https://omabrowser.org/oma/group/F1SHL3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "pmid": "" }, { "name": "COPII vesicle coat", "id": "GO:0030127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030127", "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "pmid": "" }, { "name": "endoplasmic reticulum exit site", "id": "GO:0070971", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070971", "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "pmid": "" }, { "name": "COPII-coated vesicle budding", "id": "GO:0090114", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090114", "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "pmid": "" }, { "name": "COPII-coated vesicle cargo loading", "id": "GO:0090110", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090110", "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "pmid": "" }, { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1SHL3", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 594, "end_pos": 596, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHL3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 765, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHL3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHL3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" }, { "id": "PF00626", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00626" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Gelsolin-like", "eco_id": "ECO_0000259", "start_pos": 632, "end_pos": 718, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" }, { "id": "PF08033", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08033" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sec23/Sec24 beta-sandwich", "eco_id": "ECO_0000259", "start_pos": 401, "end_pos": 504, "start_aa": "Gly", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" }, { "id": "PF04815", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04815" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sec23/Sec24 helical", "eco_id": "ECO_0000259", "start_pos": 518, "end_pos": 616, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" }, { "id": "PF04811", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04811" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sec23/Sec24 trunk", "eco_id": "ECO_0000259", "start_pos": 126, "end_pos": 390, "start_aa": "Gln", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL3" }, { "id": "PF04810", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04810" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc finger Sec23/Sec24-type", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 98, "start_aa": "Pro", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 239, "end_pos": 241 }, { "start_pos": 365, "end_pos": 367 }, { "start_pos": 378, "end_pos": 380 }, { "start_pos": 594, "end_pos": 596 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGP7-1", "uniprot_ac": "F1SGP7", "uniprot_id": "F1SGP7_PIG", "mass": { "chemical_mass": 46784.0, "monoisotopic_mass": 46784.0 }, "refseq": { "ac": "XP_003122940", "name": "elongator complex protein 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122940" }, "gene_names": [ { "name": "ELP4", "type": "recommended", "evidence": [ { "id": "F1SGP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGP7" } ] }, { "name": "ELP4", "type": "synonym", "evidence": [ { "id": "XP_003122940", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122940" } ] } ], "protein_names": [ { "name": "Elongator complex protein 4", "type": "recommended", "evidence": [ { "id": "F1SGP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGP7/entry#names_and_taxonomy" } ] }, { "name": "elongator complex protein 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003122940", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122940" } ] } ], "function": [ { "annotation": "Component of the elongator complex which is required for multiple tRNA modifications, including mcm5U (5-methoxycarbonylmethyl uridine), mcm5s2U (5-methoxycarbonylmethyl-2-thiouridine), and ncm5U (5-carbamoylmethyl uridine). The elongator complex catalyzes the formation of carboxymethyluridine in the wobble base at position 34 in tRNAs.", "evidence": [ { "database": "UniProtKB", "id": "F1SGP7", "url": "https://www.uniprot.org/uniprotkb/F1SGP7#function" }, { "database": "UniProtKB", "id": "ARBA00045238", "url": "https://www.uniprot.org/uniprotkb/ARBA00045238#function" }, { "database": "UniProtKB", "id": "I3LQ04", "url": "https://www.uniprot.org/uniprotkb/I3LQ04#function" }, { "database": "UniProtKB", "id": "A0A287AP15", "url": "https://www.uniprot.org/uniprotkb/A0A287AP15#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGP7", "url": "https://www.uniprot.org/uniprotkb/F1SGP7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ELP4", "url": "https://www.uniprot.org/uniprotkb/F1SGP7", "locus": { "chromosome": "2", "start_pos": 29004987, "end_pos": 29230077, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013321", "url": "https://www.ensembl.org/id/ENSSSCG00000013321" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013321", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013321", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19494", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19494", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514702", "url": "https://www.ncbi.nlm.nih.gov/gene/100514702", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514702", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514702", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NTTMWDD", "url": "https://omabrowser.org/oma/group/NTTMWDD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGP7", "url": "https://www.orthodb.org/?gene=F1SGP7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12896", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12896", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12896:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12896:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05625", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05625", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122940", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AP15", "url": "https://www.uniprot.org/uniprotkb/A0A287AP15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AP15-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AP15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGP7", "url": "https://www.uniprot.org/uniprotkb/F1SGP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGP7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQ04", "url": "https://www.uniprot.org/uniprotkb/I3LQ04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LQ04-1", "url": "https://www.uniprot.org/uniprotkb/I3LQ04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVATCGTCTGSPGSTVAAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNCKKEFDEDVHNHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRFGHYYDLSKRIPQELIEASKWHRFFLPEKISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGFDGSNPQKKQKNILRIGIQSLGSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACIITMPTHLIQNKAIIARVTNLSDIVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLICDVSDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSGKQDLAESAKLLGPGCGMMAGGEKHLDF", "length": 424, "header": "tr|F1SGP7-1|F1SGP7_PIG Isoform 1 of Elongator complex protein 4 OS=Sus scrofa OX=9823 GN=ELP4 PE=3 SV=1 CANONICAL=F1SGP7-1" }, "isoforms": [ { "isoform_ac": "A0A287AP15-1", "url": "https://www.uniprot.org/uniprotkb/F1SGP7/entry#A0A287AP15-1", "sequence": { "sequence": "MAAVATCGTCTGSPGSTVAAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNCKKEFDEDVHNHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRFGHYYDLSKRIPQELIEASKWHRFFLPEKISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGFDGSNPQKKQKNILRIGIQSLGSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACIITMPTHLIQNKAIIARVTNLSDIVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLICDVSDVKDLAFKLKRKLFTIEYLLLFIYFFTLTKFLGNISR", "length": 401, "header": "tr|A0A287AP15-1|F1SGP7_PIG Computationally mapped isoform of Elongator complex protein 4 OS=Sus scrofa OX=9823 GN=ELP4 PE=3 SV=3 CANONICAL=F1SGP7-1" }, "locus": { "chromosome": "2", "start_pos": 29230049, "end_pos": 29131925, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047519.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047519.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045675.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045675.3" } ] } }, { "isoform_ac": "F1SGP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGP7/entry#F1SGP7-1", "sequence": { "sequence": "MAAVATCGTCTGSPGSTVAAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPADILQELPAPLLDDNCKKEFDEDVHNHKTPESNIKMKIAWRYQLLPKMEAGPVSSSRFGHYYDLSKRIPQELIEASKWHRFFLPEKISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGFDGSNPQKKQKNILRIGIQSLGSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACIITMPTHLIQNKAIIARVTNLSDIVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLICDVSDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSGKQDLAESAKLLGPGCGMMAGGEKHLDF", "length": 424, "header": "tr|F1SGP7-1|F1SGP7_PIG Isoform 1 of Elongator complex protein 4 OS=Sus scrofa OX=9823 GN=ELP4 PE=3 SV=1 CANONICAL=F1SGP7-1" }, "locus": { "chromosome": "2", "start_pos": 29230049, "end_pos": 29006739, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014547.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014547.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014152.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014152.2" } ] } }, { "isoform_ac": "I3LQ04-1", "url": "https://www.uniprot.org/uniprotkb/F1SGP7/entry#I3LQ04-1", "sequence": { "sequence": "MAAVATCGTCTGSPGSTVAAASKNNVTSFQRRGPRASGSDSGYSRLVSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPADILQAGPVSSSRFGHYYDLSKRIPQELIEASKWHRFFLPEKISSTFNVEPCSLTHGYKRLLQFIQNIIYEEGFDGSNPQKKQKNILRIGIQSLGSPLWGDDICCTENCDNSHSLTKFLYILRGLLRASLSACIITMPTHLIQNKAIIARVTNLSDIVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLICDVSDVKDLAFKLKRKLFTIEWVQDNYLRQERNIYPPGFSYLLKQKDSAWGEGSLQHSTFLMSFLAKATAFASRLVRHSEPLRQTGSGRIRQAAGPRLWHDGRRREAPGLLVIPP", "length": 431, "header": "tr|I3LQ04-1|F1SGP7_PIG Computationally mapped isoform of Elongator complex protein 4 OS=Sus scrofa OX=9823 GN=ELP4 PE=3 SV=4 CANONICAL=F1SGP7-1" }, "locus": { "chromosome": "2", "start_pos": 29230049, "end_pos": 29006725, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031770.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031770.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026182.4", "url": "https://www.ensembl.org/id/ENSSSCP00000026182.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LQ04", "url": "https://www.uniprot.org/uniprotkb/I3LQ04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514702", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514702", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7JU71-1", "protein_name": "Elongator complex protein 4", "gene_name": "Elp4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAAATCGAGVLSSGCVASTAGRSSTTSFQRRSKASGADGGGPRLLSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYSIYSPLLFKYFLAEGIVNGHTLLVASAKEKPADILQELPAPLLDDNGKKELEDVHNSKTPESDVNMKIAWRYQLQPKMQVGPVSSSRFGHYYDVSKRIPQELLGSSKWHGFFLPEHITSDLKGEPCSLSGDYMKLLQFIQNIIYTEGFDGSNPQKKQKNILRIGIQNFGSPFWGDDICCTENSDNSHRLTKFFYVLRGLLRTSLSACIITMPTHLIQNKAITARVRNLSDTVVGLESFIGSEKETNSLYKDYHGLIHIRKIPRLNNLTCDESDVKDLAFKLKRKLFTIEGWVWNSNICLSLPPECLEKATAFASRLVRHSESLKQTGSGRIRQAAGPRLWHDGRRQEAPGLLGNPP", "length": 446 }, "evidence": [ { "id": "F1SGP7", "url": "https://omabrowser.org/oma/group/F1SGP7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1M086-1", "protein_name": "Elongator complex protein 4", "gene_name": "Elp4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAATCGAGTLSSECVASEAGQSRTSSFQRRGKASGAPGGGPRLLSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTLLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKENPANILQELPAPLLDDNGKKELEDVHSAKPPEADANMKIAWRYQLQPRMEQVGPVLSSRFGHYYDVSRRIPQELLESSNWHGFFLPEHTPPGLKGEPCFLSCGYMKLLQFFQNIIYTEGFDGANPQKKQKNILRIGIQNLGSPLWGDDICCKENSDNHHRLTKFLYILRGLLRSSLSACIITMPAQLVQNKAITTRVRNLSDTVVGLESFIGSERETNPLYKDYHGLIHIRKIPRLNNLTCDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVGRSSRQDLAPSTTLLGTGCSGMTGGKKRLDF", "length": 423 }, "evidence": [ { "id": "F1SGP7", "url": "https://omabrowser.org/oma/group/F1SGP7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2TBH6-1", "protein_name": "Elongator complex protein 4", "gene_name": "ELP4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAGTCGTGTRSTGSMVAAASTNNVTSFQRRGPRASGADSGCSRLVSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVSGHALLVASAKEDPADILQKLPAPLIDDSYKKECDEDVCSHKMEPDIKMKIAWRYQLLPKMEAGPVSSSRFGHYYDISKRIPQELIETSKWHGFFLPEKISSAFNVESCSLTPGYMKLLQFIQNIIYKEGFDGSNPQKKQKNILRIGIQNLGSPLWGDDICCTENCDTSHSLTKFLYILRGLLRTSLSACIITMPTHLIQNKAVIARVTNLSDTVVGLESFIGSEKETNPLYKDYHGLIHIRQIPRLNNLIYDISDVKDLAFKLKKKLFTIERLHLPPDLSDTVSRSSKQDLAESTKLLGPGCGMTAGGKKHLDF", "length": 423 }, "evidence": [ { "id": "F1SGP7", "url": "https://omabrowser.org/oma/group/F1SGP7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54XS0-1", "protein_name": "Elongator complex protein 4", "gene_name": "elp4", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPRVPTTFTRKVAGGVKTTTTGSSLPTNNTSTTTTTTTTAAKKLPNGCKISIKNSNLLTSTGLTDLDDIIGGGIPIGSILMIEEDINSSYYMFLLKYFLAEGVLQQQGVFFSSLIGIDPFEILNKLPARITKEEEIEADKNDTTNNINTNINTNNNNKQPTDELKIAWRYQQYVSNELSKQQQQQSASTIMNQTFCHSYDFTRKMNVQSMNPELIHTLSHDAQSQAEGTSPYRNLFLEIQNLVYKYNKEAAMNPDQTRVLRLCIQSFSSPLWSNDEEGVIEFLHALKGLLRSSVATCVISVPTYIYSGAFVKKIAHLCDTVVSINSFSGLGGETPEQFAEYLGLFNIRKIARLNTLSLSFHPDMLTFVFKMKRRKMCIETIHLPPESSRAGDSKPDNNDSNKNKSDQNNIVSKMKSGSGLLCGGGGGGSSNNNPLDF", "length": 439 }, "evidence": [ { "id": "F1SGP7", "url": "https://omabrowser.org/oma/group/F1SGP7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q566Y1-1", "protein_name": "Elongator complex protein 4", "gene_name": "elp4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAPVRGMAVSSSIGNTTSFQKKTRSKLVFIPGTRPSVQNGQLLVSSGVSSLDYVIGGGLAVGTLLLVEEDRYDSYSRMLLKYFLAEGIVCGHELFLASARDHPDQIMQELPSPILDDVASMKMSEGQSQPNDPDNPDTMKIAWRYQNQPRVQTALASSSRFGHYYDASKTMDPELLQAAKYHSFYQLQETPVTTGLSSLPSPYLALLKSIQTLIQKEGFDGSTPQLRGRNVLRVGLHSLGSVLWGDDVCCKDNSAHCHALSTFLYALRGLLRTSLSVAMMTVPSHLIQSRAVMGRIIRLSDTAIALESFRGSEKETNPLYKDYHGLLYVRQIPRLNCLTSEVPDTKDLAFKLKRKQFTIERLHLPPDLSETVSRVSKADLAAGCASTATGNKHLHF", "length": 397 }, "evidence": [ { "id": "F1SGP7", "url": "https://omabrowser.org/oma/group/F1SGP7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96EB1-1", "protein_name": "Elongator complex protein 4", "gene_name": "ELP4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVATCGSVAASTGSAVATASKSNVTSFQRRGPRASVTNDSGPRLVSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSPLLFKYFLAEGIVNGHTLLVASAKEDPANILQELPAPLLDDKCKKEFDEDVYNHKTPESNIKMKIAWRYQLLPKMEIGPVSSSRFGHYYDASKRMPQELIEASNWHGFFLPEKISSTLKVEPCSLTPGYTKLLQFIQNIIYEEGFDGSNPQKKQRNILRIGIQNLGSPLWGDDICCAENGGNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARVTTLSDVVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLICDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVSRSSKMDLAESAKRLGPGCGMMAGGKKHLDF", "length": 424 }, "evidence": [ { "id": "F1SGP7", "url": "https://omabrowser.org/oma/group/F1SGP7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9C778-1", "protein_name": "Elongator complex protein 4", "gene_name": "ELP4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAPNVRSSSSFSRNISVVSSPQIPGLKSGPNGTAFISSGIRDLDRILGGGYPLGSLVMVMEDPEAPHHMDLLRTYMSQGLVNNQPLLYASPSKDPKGFLGTLPHPASSKEDKPTAPDPDQGESLRIAWQYRKYLENQKNAIDDYSNDFDMRKPLERQFLSGRPIDCVSLLDSSDLSIAQDHCATFLSKFPRNSSNIASIGRIAIQSFCSPLCEYSEKESDMLSFIRLLKSMLMVSNAVAIVTFPPSLLSPSSSKRLQHMADTLLSIKAIPDGDKELEKLLTGYKDINGFLNIHKVARINTQVPVILEAKTFSMSLKKRRFLALECLNQAPVDGSSGTSYGTSGSCSSKSGALDF", "length": 355 }, "evidence": [ { "id": "F1SGP7", "url": "https://omabrowser.org/oma/group/F1SGP7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9ER73-1", "protein_name": "Elongator complex protein 4", "gene_name": "Elp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAADTCGAGTLSSRSVASEAGQGGTSSFQRKGKASGGPGGGPRLLSIAGTRPSVRNGQLLVSTGLPALDQLLGGGLAVGTLLLIEEDKYNIYSPLLFKYFMAEGIINGHTLLVASAKENPAKILQELPAPLLDDNSKKELEDVHSAKTPEPNVNMKIAWRYQLQPKMEVGPVSSSRFGHYYDLSKRIPWELLQSSKWHGFFLPEHISPDLKGESCFLSCGYMRLLEFIQKSVYAEGFDGANPQKKQKNILRIGIQNLGSPLWGDDICCKENCDNNHRLTKFLYILRGLLRSSLSACIITMPAHLVQNKSITTRVRNLSDTVVGLESFIGSERETNPLYKDYHGLIHIRKIPRLNNLTCDESDVKDLAFKLKRKLFTIERLHLPPDLSDTVGRSSKQDLAASTARLGAGCSSMAEGKKHLDF", "length": 422 }, "evidence": [ { "id": "F1SGP7", "url": "https://omabrowser.org/oma/group/F1SGP7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VMQ7-1", "protein_name": "Elongator complex protein 4", "gene_name": "Elp4", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTSFRKRTVQKPIRGTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLIEEDRFMTHAKVLAKYFLAEGVISKQEIFLGSLDDIPAEMLRRLPRPLTDQESMEQSEVQALGDAGAENGLRIAWRYNDLPLVNSEHATAKIGHHFNLMEQMDSMMLYNVKTTLWDDSPKHLDIVIDEEFSKSSSPTTPSLEQQPVEDAPPIPGTETAPQEKMPAQEEENSANNNNNNNNNSSSVTSSTKTGSQDSPLQVFHNPRYKGLLNDIQQLLRNESFVAGTKNNLCRVCLTSLGSPLWYDEHFGEDLIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIRQLVDYAIELESFAGSERETHPAFKEYSGLLHLHKMSAINTLAVHMPETPDLAFKLRRKKFIIEKFHLPPELQESSAKPDNCISGLLSNSNATASLDF", "length": 437 }, "evidence": [ { "id": "F1SGP7", "url": "https://omabrowser.org/oma/group/F1SGP7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGP7", "url": "https://www.uniprot.org/uniprotkb/F1SGP7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGP7", "url": "https://www.uniprot.org/uniprotkb/F1SGP7" } ], "pmid": "" }, { "name": "elongator holoenzyme complex", "id": "GO:0033588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033588", "evidence": [ { "database": "UniProtKB", "id": "F1SGP7", "url": "https://www.uniprot.org/uniprotkb/F1SGP7" } ], "pmid": "" }, { "name": "transcription elongation factor complex", "id": "GO:0008023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008023", "evidence": [ { "database": "UniProtKB", "id": "F1SGP7", "url": "https://www.uniprot.org/uniprotkb/F1SGP7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "tRNA wobble uridine modification", "id": "GO:0002098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002098", "evidence": [ { "database": "UniProtKB", "id": "F1SGP7", "url": "https://www.uniprot.org/uniprotkb/F1SGP7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SGP7", "url": "https://www.uniprot.org/uniprotkb/F1SGP7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 }, { "start_pos": 319, "end_pos": 321 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHZ5-1", "uniprot_ac": "F1SHZ5", "uniprot_id": "F1SHZ5_PIG", "mass": { "chemical_mass": 59399.0, "monoisotopic_mass": 59399.0 }, "refseq": { "ac": "XP_003480516", "name": "DNA polymerase epsilon subunit 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480516" }, "gene_names": [ { "name": "POLE2", "type": "recommended", "evidence": [ { "id": "F1SHZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" } ] }, { "name": "POLE2", "type": "synonym", "evidence": [ { "id": "XP_003480516", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480516" } ] } ], "protein_names": [ { "name": "DNA polymerase epsilon subunit", "type": "recommended", "evidence": [ { "id": "F1SHZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5/entry#names_and_taxonomy" } ] }, { "name": "DNA polymerase II subunit 2", "type": "synonym", "evidence": [ { "id": "F1SHZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5/entry#names_and_taxonomy" } ] }, { "name": "DNA polymerase epsilon subunit 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003480516", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480516" } ] } ], "function": [ { "annotation": "Accessory component of the DNA polymerase epsilon complex. Participates in DNA repair and in chromosomal DNA replication.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RIR7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIR7#function" }, { "database": "UniProtKB", "id": "ARBA00054225", "url": "https://www.uniprot.org/uniprotkb/ARBA00054225#function" }, { "database": "UniProtKB", "id": "A0A287AU61", "url": "https://www.uniprot.org/uniprotkb/A0A287AU61#function" }, { "database": "UniProtKB", "id": "A0A5G2QI87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI87#function" }, { "database": "UniProtKB", "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLE2", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5", "locus": { "chromosome": "1", "start_pos": 179495214, "end_pos": 179529896, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005008", "url": "https://www.ensembl.org/id/ENSSSCG00000005008" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005008", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005008", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521651", "url": "https://www.ncbi.nlm.nih.gov/gene/100521651", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016266", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016266", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024639", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024639", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521651", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521651", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FFCEGCF", "url": "https://omabrowser.org/oma/group/FFCEGCF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHZ5", "url": "https://www.orthodb.org/?gene=F1SHZ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12708", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12708", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12708:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12708:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04042", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04042", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12213", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12213", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110314", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110314", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5651801", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5651801", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5656169", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656169", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5685942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693537", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693537", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5696397", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696397", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5696400", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696400", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782210", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782210", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68952", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68952", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68962", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68962", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003480516", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480516", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AU61", "url": "https://www.uniprot.org/uniprotkb/A0A287AU61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AU61-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AU61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI87", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QI87-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QI87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIR7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHZ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPDRLRSRALSAFKLRGLLLRGEAIKYLTGALQSINEVELEDALEKIIDAVEKQPLSSNMIEKSVVEAAVQECSQSVDETIEHIFNIIGAFDIPRFVYNSERKKFLPLLMTSHPAPNLFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKIGDVIVLGMITQLKEGKFFLEDPTGTVPLDLSKAQFHSGLYTESCFVLAEGWFEDQIFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEVLEKLHTMFSGYSPAPPTCFILCGNFSSTPYGKNQVQALKDSLKTLADIICEYPNIHQSSRFVFVPGPEDPGFGSILPRPPFAESITNEFRQRVPYSVFTTNPCRIQYCTQEIIVFREDLVNKMCRNCVRFPGSNLDIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVIADKYDPFTLTNTECLCLNPGSFPRSGFSFKVYYPSSKTVEDSKLQGF", "length": 527, "header": "tr|F1SHZ5-1|F1SHZ5_PIG Isoform 1 of DNA polymerase epsilon subunit OS=Sus scrofa OX=9823 GN=POLE2 PE=3 SV=1 CANONICAL=F1SHZ5-1" }, "isoforms": [ { "isoform_ac": "A0A287AU61-1", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5/entry#A0A287AU61-1", "sequence": { "sequence": "MAPDRLRSRALSAFKLRGLLLRGEAIKYLTGALQSINEVELEDALEKIIDAVEKQPLSSNMIEKSVVEAAVQECSQSVDETIEHIFNIIGAFDIPRFVYNSERKKFLPLLMTSHPAPNLFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKIGDVIVLGMITQLKEGKFFLEDPTGTVPLDLSKAQFHSGLYTESCFVLAEGWFEDQIFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEVLEKLHTMFSGYSPAPPTCFILCGNFSSTPYGKNQVQALKDSLKTLADIICEYPNIHQSSRFVFVPGPEDPGFGSILPRIQYCTQEIIVFREDLVNKMCRNCVRFPGSNLDIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVIADKYDPFTLTNTECLCLNPGSFPRSGFSFKVYYPSSKTVEDSKLQGF", "length": 501, "header": "tr|A0A287AU61-1|F1SHZ5_PIG Computationally mapped isoform of DNA polymerase epsilon subunit OS=Sus scrofa OX=9823 GN=POLE2 PE=3 SV=1 CANONICAL=F1SHZ5-1" }, "locus": { "chromosome": "1", "start_pos": 179529855, "end_pos": 179495386, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038321.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038321.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047463.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047463.1" } ] } }, { "isoform_ac": "A0A5G2QI87-1", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5/entry#A0A5G2QI87-1", "sequence": { "sequence": "MAPDRLRSRALSAFKLRGLLLRGEAIKYLTGALQSINEVELEDALEKIIDAVEKQPLSSNMIEKSVVEAAVQECSQSVDETMLLMTSHPAPNLFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKIGDVIVLGMITQLKEGKFFLEDPTGTVPLDLSKAQFHSGLYTESCFVLAEGWFEDQIFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEVLEKLHTMFSGYSPAPPTCFILCGNFSSTPYGKNQVQALKDSLKTLADIICEYPNIHQSSRFVFVPGPEDPGFGSILPRPPFAESITNEFRQRVPYSVFTTNPCRIQYCTQEIIVFREDLVNKMCRNCVRFPGSNLDIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVIADKYDPFTLTNTECLCLNPGSFPRSGFSFKVYYPSSKTVEDSKLQGF", "length": 501, "header": "tr|A0A5G2QI87-1|F1SHZ5_PIG Computationally mapped isoform of DNA polymerase epsilon subunit OS=Sus scrofa OX=9823 GN=POLE2 PE=3 SV=1 CANONICAL=F1SHZ5-1" }, "locus": { "chromosome": "1", "start_pos": 179529855, "end_pos": 179495386, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079629.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079629.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061733.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061733.1" } ] } }, { "isoform_ac": "A0A5G2RIR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5/entry#A0A5G2RIR7-1", "sequence": { "sequence": "MAPDRLRSRALSAFKLRGLLLRGEAIKYLTGALQSINEVELEDALEKIIDAVEKQPLSSNMIEKSVVEAAVQECSQSVDETMYVKIINFFPIWKGY", "length": 96, "header": "tr|A0A5G2RIR7-1|F1SHZ5_PIG Computationally mapped isoform of DNA polymerase epsilon subunit OS=Sus scrofa OX=9823 GN=POLE2 PE=3 SV=1 CANONICAL=F1SHZ5-1" }, "locus": { "chromosome": "1", "start_pos": 179529855, "end_pos": 179522760, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069017.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069017.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071543.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071543.1" } ] } }, { "isoform_ac": "F1SHZ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5/entry#F1SHZ5-1", "sequence": { "sequence": "MAPDRLRSRALSAFKLRGLLLRGEAIKYLTGALQSINEVELEDALEKIIDAVEKQPLSSNMIEKSVVEAAVQECSQSVDETIEHIFNIIGAFDIPRFVYNSERKKFLPLLMTSHPAPNLFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKIGDVIVLGMITQLKEGKFFLEDPTGTVPLDLSKAQFHSGLYTESCFVLAEGWFEDQIFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEVLEKLHTMFSGYSPAPPTCFILCGNFSSTPYGKNQVQALKDSLKTLADIICEYPNIHQSSRFVFVPGPEDPGFGSILPRPPFAESITNEFRQRVPYSVFTTNPCRIQYCTQEIIVFREDLVNKMCRNCVRFPGSNLDIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVIADKYDPFTLTNTECLCLNPGSFPRSGFSFKVYYPSSKTVEDSKLQGF", "length": 527, "header": "tr|F1SHZ5-1|F1SHZ5_PIG Isoform 1 of DNA polymerase epsilon subunit OS=Sus scrofa OX=9823 GN=POLE2 PE=3 SV=1 CANONICAL=F1SHZ5-1" }, "locus": { "chromosome": "1", "start_pos": 179529855, "end_pos": 179495386, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005524.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005524.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005387.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005387.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RIR7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIR7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521651", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521651", "resource": "KEGG Pathway" }, { "id": "R-SSC-110314", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110314", "resource": "Reactome", "description": "Recognition of DNA damage by PCNA-containing replication complex" }, { "id": "R-SSC-5651801", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5651801", "resource": "Reactome", "description": "PCNA-Dependent Long Patch Base Excision Repair" }, { "id": "R-SSC-5656169", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656169", "resource": "Reactome", "description": "Termination of translesion DNA synthesis" }, { "id": "R-SSC-5685942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685942", "resource": "Reactome", "description": "HDR through Homologous Recombination (HRR)" }, { "id": "R-SSC-5693537", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693537", "resource": "Reactome", "description": "Resolution of D-Loop Structures" }, { "id": "R-SSC-5696397", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696397", "resource": "Reactome", "description": "Gap-filling DNA repair synthesis and ligation in GG-NER" }, { "id": "R-SSC-5696400", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696400", "resource": "Reactome", "description": "Dual Incision in GG-NER" }, { "id": "R-SSC-6782135", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782135", "resource": "Reactome", "description": "Dual incision in TC-NER" }, { "id": "R-SSC-6782210", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782210", "resource": "Reactome", "description": "Gap-filling DNA repair synthesis and ligation in TC-NER" }, { "id": "R-SSC-68952", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68952", "resource": "Reactome", "description": "DNA replication initiation" }, { "id": "R-SSC-68962", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68962", "resource": "Reactome", "description": "Activation of the pre-replicative complex" } ], "orthologs": [ { "uniprot_canonical_ac": "D4ABZ5-1", "protein_name": "DNA polymerase epsilon subunit", "gene_name": "Pole2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPERLRSRTVSAFKLRGLLLRSEATKYLTEALQSVTELELEENLEKIIDAVEKQPLSSNMIERSVVEAAVQECSQSVDETIEHIFNIIGAFDIPHFIYNSERKKFLPLSMTNHAAPTIFGTARDKAELYRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGCFEDQVFHANAFGFPPTEPSSTTRAYYGNINFFGGPSNASVKASAKLRQLEEENKDAMFVIVSDVWLDQVQVLEKLHVMFSGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKSLADIICEYPSIHQSSRFVFVPGPEDPGFGSILPRPPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIIIFREDLVNKMCRNCVRFPSSSLDIPTHFVKTVLSQGHLAPLPLYVSPVYWAYDYTLRVYPVPDLLVIADKYDPFTVTNTECLCINPGSFPRSGFAFKVFYPSSKTVEDSKLQGF", "length": 527 }, "evidence": [ { "id": "F1SHZ5", "url": "https://omabrowser.org/oma/group/F1SHZ5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O54956-1", "protein_name": "DNA polymerase epsilon subunit 2", "gene_name": "Pole2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPERLRSRTVSAFKLRGLLLRSEATKYLTEALQSVTELELEENLGKIIDAVEKQPLSSNMIERSVVEAAVQECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARDKAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHANAFGFPPTEPSSTTRAYYGNINFFGGPSNASVKTYTKLRQLEDENKDAMFVIVSDVWLDQVQVLEKFHVMFSGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKSLADIICEYPSIHQSSRFVFVPGPEDPGFGSILPRPPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIIIFREDLVNKMCRNCVRFPSSSLDIPTHFVKTILSQGHLAPLPLYVCPVHWAYDYTLRVYPVPDLLVIADKYDPFTVTNTDCLCINPGSFPRSGFAFKVFYPSSKTVEDSKLQGF", "length": 527 }, "evidence": [ { "id": "F1SHZ5", "url": "https://omabrowser.org/oma/group/F1SHZ5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56282-1", "protein_name": "DNA polymerase epsilon subunit 2", "gene_name": "POLE2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPERLRSRALSAFKLRGLLLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIERSVVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEVLEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIICEYPDIHQSSRFVFVPGPEDPGFGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVIADKYDPFTTTNTECLCINPGSFPRSGFSFKVFYPSNKTVEDSKLQGF", "length": 527 }, "evidence": [ { "id": "F1SHZ5", "url": "https://omabrowser.org/oma/group/F1SHZ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q500V9-1", "protein_name": "DNA polymerase epsilon subunit B", "gene_name": "DPB2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSTSQKRKKIQKKFKNRGYNLKFDALDEILVFADQFPDDDDGEAIDLLLDNLQETHKSSTVDAESVRGLINRLLGAHNAPEEPTTSASSLAIIDAFLVPKFGYDSVKKKFNEHTSSLPIHGEASAKTALYRERFMLLSQRVSRAEHFSRPAFDAEMSQFENNEISSIQSLISQRGRKWVMGVISQLEDGHFYLEDLSASVEIDLSKAKITTGFFTENTIILAEGEMQVNGIFQVITCGFPPLEDRDKTLKAHSEYDFFGGGTLTKEEMIKLADLERQAVNDTFVILSDIWLDDEEVMRKLETVLDGFESVETVPSLFVFMGNFCSRPCNLSFGSYSSLREQFGKLGRMIGNHPRLKENSRFLFIPGPEDAGPSTVLPRCALPKYLTEELRNIIPNAIFSSNPCRVKFYNQEIVFFRQDLLYRMRRSCLVTPSSEETNDPFKHLVYTITHQSHLCPLPLMVQPIIWNYDHALRLYPTPHTIVLGDKSEQEVCKFGGTTCFNPGSFSTDSTFVAYRPSTQEVELSAL", "length": 526 }, "evidence": [ { "id": "F1SHZ5", "url": "https://omabrowser.org/oma/group/F1SHZ5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q54Y85-1", "protein_name": "DNA polymerase epsilon subunit 2", "gene_name": "pole2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDIQWKKQITKSFSLTGFSIKADAMKCIINRIKNEGYDITQLIDNLLKNLDKSQYLQTIEGCFKLIDTINSSDAIEKEALKVIDAFNTPLFNFDSNSKQFIKSENFDRSLHGSSNSKSDLYRKRYLKVLQRTERNDYFSTPVLASDKLKNEYQTITPLSSLLGNTGRKHVLGTISQIEEDQFYIEDLNTNVKIDISKAKFEFGIVTINSIIQASGEFIDGVFIADKIQLPPTEERCETLKFLQNIDMFGERPQKKTMEQLIKYEKEKEDNSILFLSDVWLDSERVMERLDYLFGGYKDCPPFAMILMGNFTEHPLINGTQYQLKKYFNQLAMVIQKYPNIHQFTQFIFVPGPTDPTGSLLNILPKFPISNVFIKDFISLIPKSTFTTNPCRIRYCSQEIIIFRDDLTNKMRRHCILEPSQSCDISQHLIELICSNSHLCNLTLEDKPIYWNYDHAMSVYPLPDLLVIGDKSNQYEHSRADGTYSMNPSSFSTDYSFAHYIPANKQFYYNKADRPSDEIEDDDDDEEVENQNENENENENENENENENENNDNDKTQQKDTQGDGDDNDDDEIMIDENEKQKSRKRNKKVVIITKEDELNKLEDDEEILNSLDVQQQSENHADNNNNNINNNNNDDDNEDDEDSNYNNIESEVQEVEKEEEEDEEPIDNDKLDEFIE", "length": 676 }, "evidence": [ { "id": "F1SHZ5", "url": "https://omabrowser.org/oma/group/F1SHZ5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9VRQ7-1", "protein_name": "DNA polymerase epsilon subunit 2", "gene_name": "PolE2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDVDLLPLRKRITNTFKLCGFLIRSENSSYLAEQLLPFDAAERDKWLTVITENLQSQKLLTPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTAPRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLATSAMKEAVVLGLLTQLKEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPANSSRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMEKLRQLFVGYDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQLKKQTDLILVPSSEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVCRLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLPDLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKVYIPATRTIEDSEIPDELE", "length": 525 }, "evidence": [ { "id": "F1SHZ5", "url": "https://omabrowser.org/oma/group/F1SHZ5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "epsilon DNA polymerase complex", "id": "GO:0008622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008622", "evidence": [ { "database": "UniProtKB", "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated DNA replication", "id": "GO:0006261", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006261", "evidence": [ { "database": "UniProtKB", "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" } ], "pmid": "" }, { "name": "DNA replication", "id": "GO:0006260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006260", "evidence": [ { "database": "UniProtKB", "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" } ], "pmid": "" }, { "name": "error-prone translesion synthesis", "id": "GO:0042276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042276", "evidence": [ { "database": "UniProtKB", "id": "F1SHZ5", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" }, { "start_pos": 324, "end_pos": 326, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" }, { "id": "PF04042", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04042" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA polymerase alpha/delta/epsilon subunit B", "eco_id": "ECO_0000259", "start_pos": 287, "end_pos": 488, "start_aa": "Phe", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHZ5" }, { "id": "PF12213", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12213" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA polymerase epsilon subunit B N-terminal", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 74, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 266, "end_pos": 268 }, { "start_pos": 324, "end_pos": 326 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPF4-1", "uniprot_ac": "F1SPF4", "uniprot_id": "F1SPF4_PIG", "mass": { "chemical_mass": 41428.0, "monoisotopic_mass": 41428.0 }, "refseq": {}, "gene_names": [ { "name": "TPRA1", "type": "recommended", "evidence": [ { "id": "F1SPF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPF4" } ] } ], "protein_names": [ { "name": "Integral membrane protein GPR175", "type": "recommended", "evidence": [ { "id": "F1SPF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPF4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPF4", "url": "https://www.uniprot.org/uniprotkb/F1SPF4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TPRA1", "url": "https://www.uniprot.org/uniprotkb/F1SPF4", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000011623", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011623", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DRWKSIN", "url": "https://omabrowser.org/oma/group/DRWKSIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15876", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15876", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15876:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15876:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10160", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10160", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AVH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AVH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPF4", "url": "https://www.uniprot.org/uniprotkb/F1SPF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPF4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGRGLRTGCWRDGHPGGGDLGQQSMALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFFIFLLWKLPFARAKIRVTSSPIFITFYILVFVVALVGIARAVVSMTVSTSDAATVADKILWEITRFFLLAIELSVVILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSAEDFNIYGHGGRQFWLVSSCFFFLVYSLVVVLPKTPLKERISLPSRRSFYVYAGILALLNLLQGLGSALLCADIIEGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDEAEEPDMHLPQPYAVARREGLEAAGAASTQFDSASGVAYLDDVASMPCHAGSINSTDSERWKAINA", "length": 377, "header": "tr|F1SPF4-1|F1SPF4_PIG Isoform 1 of Integral membrane protein GPR175 OS=Sus scrofa OX=9823 GN=TPRA1 PE=3 SV=3 CANONICAL=F1SPF4-1" }, "isoforms": [ { "isoform_ac": "A0A287AVH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPF4/entry#A0A287AVH4-1", "sequence": { "sequence": "MGGRGLRTGCWRDGHPGGGDLGQQSMALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFFIFLLWKLPFARAKIRVTSSPIFITFYILVFVVALVGIARAVVSMTVSTSDAATVADKILWEITRFFLLAIELSVVILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSAEDFNIYGHGGRQFWLVSSCFFFLRGGASTCTRASWRCSTCCRGWGARCCARTSSRGSAAWTPPPSSTSASSLPSSTWPSCGASSAQSPRSSSPTNAKWTRPRNRTCTCPSPMRWPGGRAWRRQGLPARSSTRPVGWPTWMTWLPCPATQAASTAQTASAGRPSMPSVQPWPEGLRAPVERSQRGGGEQSPPHRWARGQDCVWGTVLSCPRSPTCCLPSLL", "length": 412, "header": "tr|A0A287AVH4-1|F1SPF4_PIG Computationally mapped isoform of Integral membrane protein GPR175 OS=Sus scrofa OX=9823 GN=TPRA1 PE=3 SV=2 CANONICAL=F1SPF4-1" }, "locus": { "chromosome": "13", "start_pos": 72666748, "end_pos": 72656244, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046077.2", "url": "https://www.ensembl.org/id/ENSSSCT00000046077.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047867.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047867.2" } ] } }, { "isoform_ac": "F1SPF4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPF4/entry#F1SPF4-1", "sequence": { "sequence": "MGGRGLRTGCWRDGHPGGGDLGQQSMALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFFIFLLWKLPFARAKIRVTSSPIFITFYILVFVVALVGIARAVVSMTVSTSDAATVADKILWEITRFFLLAIELSVVILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSAEDFNIYGHGGRQFWLVSSCFFFLVYSLVVVLPKTPLKERISLPSRRSFYVYAGILALLNLLQGLGSALLCADIIEGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDEAEEPDMHLPQPYAVARREGLEAAGAASTQFDSASGVAYLDDVASMPCHAGSINSTDSERWKAINA", "length": 377, "header": "tr|F1SPF4-1|F1SPF4_PIG Isoform 1 of Integral membrane protein GPR175 OS=Sus scrofa OX=9823 GN=TPRA1 PE=3 SV=3 CANONICAL=F1SPF4-1" }, "locus": { "chromosome": "13", "start_pos": 72666582, "end_pos": 72656244, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012720.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012720.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012386.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012386.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AVH4", "url": "https://www.uniprot.org/uniprotkb/A0A287AVH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QC63-1", "protein_name": "Integral membrane protein GPR175", "gene_name": "Tpra1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDSLQEANGSTAWPPPTASNRPPTASNISEPHQCLLLLYEDIGSSRVRYWDLLLLIPNVLFFIFLLWKLPLARAKIRVTSSPIFITFYILVFVVALVGIARAVVSMTVSASDAATIADKILWEITRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDSHLSAEDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERVSLPSRRSFYVYAGILATLNLLQGLGSALLCANIIEGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDEAEEPDMHLPQPYAVARREGIESTGPAGVSAASYSSTQFDSAGMAYLDDIASMPCHTGSINSTDSERWKAINA", "length": 376 }, "evidence": [ { "id": "F1SPF4", "url": "https://omabrowser.org/oma/group/F1SPF4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1AFL9-1", "protein_name": "Integral membrane protein GPR175", "gene_name": "TPRA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKHEEFNGEQFLFIFSRRQDIPVMMSMMRFSMSDNITRSTALVTALDNVTTLSPTTTQAINDTNITVPHKCLLLLYEDIGKSRVRYWDLLLLVPNVLFFMFLLWKLPSARAKIRVTSSPIFTTFYILVFVVALVGIARAVVSMTVSASDAATVADKILWEITRFFLLAIELSVVILGLAFGHLESKSSVKRVLAITTVLSLAYSVTQGTLEILYPDAHLSAEDFNIYGHGGRHFWLASSCFFFLVYSFVVILPKTPLKDRISLPSRKSFYVYAGILAVLNLVQGLGSALLCVDIIEGLCCVDATTFLYFSFFAPLIYVAFLKGFFGSEPKILFSYKCQVDEPEDVDVHLPHAYAVAKKEGMDSGFYSSTQIDTTAYLDDVASMPYHVGSINSIDSDRWKAINA", "length": 403 }, "evidence": [ { "id": "F1SPF4", "url": "https://omabrowser.org/oma/group/F1SPF4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q4V8X0-1", "protein_name": "Transmembrane protein adipocyte-associated 1 homolog", "gene_name": "tpra1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLETVTDVASFVHYGNTSVFPTADNSSEIIPDGESNISKPHRCLQVLYDDIGTSRVRYWDVMLLIPNVAFLVFLMWKLPSARAKIRLTSSPIFVAFYILVFVVAAVGITRAIVSMTVSTSSAATLIDKVLWEITRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITAVLSLAYSITQGTLEIRFPDKHLSAKDFNIYGHGGRHFWLASSCFFFLVYSLIVILPKTPIRERISLPSKRSFYVYSGILALLNLVQGLGSALLCADIIEGLCCVDVTTFLYFSVFAPLIYVTFLKGFFGSEPKILFSYKSQIDEPEDSDVHLPHTSSSGLGRKDLDRGSYSSTQIDGSGAYLDDVVSGPFGGAHSINSVDSDRWRSINT", "length": 378 }, "evidence": [ { "id": "F1SPF4", "url": "https://omabrowser.org/oma/group/F1SPF4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q791F6-1", "protein_name": "Transmembrane protein adipocyte-associated 1", "gene_name": "Tpra1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASLQEANGSTAWPPPTASNISEPHQCLLLLYEDIGSSRVRYWDLLLLIPNVLFFIFLLWKLPLARAKIRVTSSPIFITFYILVFVVALVGIARAVVSMTVSASDAATVADKILWEITRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDSHLSAEDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERVSLPSRRSFYVYAGILATLNLLQGLGSALLCANIIVGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDEAEEPDMHLPQPYAVARREGIESAGPACASAANYSSTQFDSAGVAYLDDIASMPCHTGSINSTDSERWKAINA", "length": 369 }, "evidence": [ { "id": "F1SPF4", "url": "https://omabrowser.org/oma/group/F1SPF4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86W33-1", "protein_name": "Transmembrane protein adipocyte-associated 1", "gene_name": "TPRA1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIFLLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEITRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSAEDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRSFYVYAGILALLNLLQGLGSVLLCFDIIEGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDETEEPDVHLPQPYAVARREGLEAAGAAGASAASYSSTQFDSAGGVAYLDDIASMPCHTGSINSTDSERWKAINA", "length": 373 }, "evidence": [ { "id": "F1SPF4", "url": "https://omabrowser.org/oma/group/F1SPF4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q94AH1-1", "protein_name": "Protein CANDIDATE G PROTEIN-COUPLED RECEPTOR 2", "gene_name": "CAND2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MRVLSEIAESPFVISRLSPDSTATGGFIGGWVGKCHGFLHNTVLVLASILFVAYLAYEAKKSLSKLSNRRSYIMIAYYGFLWLVSLLNLAWCCLQAWECTPGKEVIWNLLTLFTTSGMLFLEVSLVAFLFQGNYASGAEALTRTFLISGLVIGLDLLLKAIYLFGFGVPLFIDNNEHIHKFKWGLWVIHKLLLAGIYGMIFFMYNSKWRERLPARPAFYKYITVMLALNGLSLFACALTANGAHFGLWLYGITSVCYHAFYLPLLYVTFLADFFQEEDLNLENVYYSEMKDAGFFDADWE", "length": 300 }, "evidence": [ { "id": "F1SPF4", "url": "https://omabrowser.org/oma/group/F1SPF4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q99MU1-1", "protein_name": "Transmembrane protein adipocyte-associated 1", "gene_name": "Tpra1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASLQEANGSTAWPPPTASNISEPHQCLLLLYEDIGSSRVRYWDLLLLIPNVLFFIFLLWKLPLARAKIRVTSSPIFITFYILVFVVALVGIARAVVSMTVSASDAATVADKILWEITRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDSHLSAEDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERVSLPSRRSFYVYAGILATLNLLQGLGSALLCANIIVGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDEAEEPDMHLPQPYAVARREGIESAGPACASAANYSSTQFDSAGVAYLDDIASMPCHTGSINSTDSERWKAINA", "length": 369 }, "evidence": [ { "id": "F1SPF4", "url": "https://omabrowser.org/oma/group/F1SPF4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SPF4", "url": "https://www.uniprot.org/uniprotkb/F1SPF4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SPF4", "url": "https://www.uniprot.org/uniprotkb/F1SPF4" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SPF4", "url": "https://www.uniprot.org/uniprotkb/F1SPF4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SPF4", "url": "https://www.uniprot.org/uniprotkb/F1SPF4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 35, "end_pos": 37 }, { "start_pos": 365, "end_pos": 367 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ34-1", "uniprot_ac": "F1SJ34", "uniprot_id": "F1SJ34_PIG", "mass": { "chemical_mass": 16748.0, "monoisotopic_mass": 16748.0 }, "refseq": {}, "gene_names": [ { "name": "COX5A", "type": "recommended", "evidence": [ { "id": "F1SJ34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ34" } ] } ], "protein_names": [ { "name": "Cytochrome c oxidase subunit 5A, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SJ34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ34/entry#names_and_taxonomy" } ] }, { "name": "Cytochrome c oxidase polypeptide Va", "type": "synonym", "evidence": [ { "id": "F1SJ34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ34/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol-cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and the ATP synthase. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Electrons originating from reduced cytochrome c in the intermembrane space (IMS) are transferred via the dinuclear copper A center (CU(A)) of subunit 2 and heme A of subunit 1 to the active site in subunit 1, a binuclear center (BNC) formed by heme A3 and copper B (CU(B)). The BNC reduces molecular oxygen to 2 water molecules using 4 electrons from cytochrome c in the IMS and 4 protons from the mitochondrial matrix.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0Q9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Q9#function" }, { "database": "UniProtKB", "id": "RU368103", "url": "https://www.uniprot.org/uniprotkb/RU368103#function" }, { "database": "UniProtKB", "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COX5A", "url": "https://www.uniprot.org/uniprotkb/F1SJ34", "locus": { "chromosome": "7", "start_pos": 58644021, "end_pos": 58622964, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024316", "url": "https://www.ensembl.org/id/ENSSSCG00000024316" } ] } } ], "crossref": [ { "id": "ENSSSCG00000024316", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024316", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00923", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00923", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156967", "url": "https://www.ncbi.nlm.nih.gov/gene/100156967", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "5GUP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GUP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZO8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZOU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZP8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BUH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CE2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR003204", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003204", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156967", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156967", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MEKWPAD", "url": "https://omabrowser.org/oma/group/MEKWPAD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ34", "url": "https://www.orthodb.org/?gene=F1SJ34", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14200", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14200", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14200:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14200:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14200:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14200:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005gup", "url": "https://www.rcsb.org/structure/pdb_00005gup", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugh", "url": "https://www.rcsb.org/structure/pdb_00008ugh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugi", "url": "https://www.rcsb.org/structure/pdb_00008ugi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugj", "url": "https://www.rcsb.org/structure/pdb_00008ugj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugl", "url": "https://www.rcsb.org/structure/pdb_00008ugl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugn", "url": "https://www.rcsb.org/structure/pdb_00008ugn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugr", "url": "https://www.rcsb.org/structure/pdb_00008ugr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zo8", "url": "https://www.rcsb.org/structure/pdb_00008zo8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zou", "url": "https://www.rcsb.org/structure/pdb_00008zou", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zp8", "url": "https://www.rcsb.org/structure/pdb_00008zp8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsn", "url": "https://www.rcsb.org/structure/pdb_00008zsn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zso", "url": "https://www.rcsb.org/structure/pdb_00008zso", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsq", "url": "https://www.rcsb.org/structure/pdb_00008zsq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009buh", "url": "https://www.rcsb.org/structure/pdb_00009buh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009ce2", "url": "https://www.rcsb.org/structure/pdb_00009ce2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.rcsb.org/structure/5GUP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.rcsb.org/structure/8UGH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.rcsb.org/structure/8UGI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.rcsb.org/structure/8UGJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGL", "url": "https://www.rcsb.org/structure/8UGL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.rcsb.org/structure/8UGN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.rcsb.org/structure/8UGR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.rcsb.org/structure/8ZO8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.rcsb.org/structure/8ZOU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.rcsb.org/structure/8ZP8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.rcsb.org/structure/8ZSN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.rcsb.org/structure/8ZSO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.rcsb.org/structure/8ZSQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.rcsb.org/structure/9BUH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.rcsb.org/structure/9CE2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF02284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5628897", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9707564", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9707564", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9837999", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9864848", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B0Q9", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Q9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0Q9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ34-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGAAVRRCSVAAAAVARASPRGLLHPTPTPGPAAAIQSIRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV", "length": 152, "header": "tr|F1SJ34-1|F1SJ34_PIG Isoform 1 of Cytochrome c oxidase subunit 5A, mitochondrial OS=Sus scrofa OX=9823 GN=COX5A PE=1 SV=1 CANONICAL=F1SJ34-1" }, "isoforms": [ { "isoform_ac": "A0A287B0Q9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ34/entry#A0A287B0Q9-1", "sequence": { "sequence": "MLGAAVRRCSVAAAAVARASPRGLLHPTPTPGPAAGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV", "length": 113, "header": "tr|A0A287B0Q9-1|F1SJ34_PIG Computationally mapped isoform of Cytochrome c oxidase subunit 5A, mitochondrial OS=Sus scrofa OX=9823 GN=COX5A PE=1 SV=1 CANONICAL=F1SJ34-1" }, "locus": { "chromosome": "7", "start_pos": 58639805, "end_pos": 58623136, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055873.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055873.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049983.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049983.2" } ] } }, { "isoform_ac": "F1SJ34-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ34/entry#F1SJ34-1", "sequence": { "sequence": "MLGAAVRRCSVAAAAVARASPRGLLHPTPTPGPAAAIQSIRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV", "length": 152, "header": "tr|F1SJ34-1|F1SJ34_PIG Isoform 1 of Cytochrome c oxidase subunit 5A, mitochondrial OS=Sus scrofa OX=9823 GN=COX5A PE=1 SV=1 CANONICAL=F1SJ34-1" }, "locus": { "chromosome": "7", "start_pos": 58639805, "end_pos": 58623136, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027931.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027931.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020264.1", "url": "https://www.ensembl.org/id/ENSSSCP00000020264.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 30, "start_aa": "Thr", "end_pos": 30, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr30", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Structure of Mammalian Respiratory Supercomplex I1III2IV1.", "journal": "Cell", "date": "2016", "authors": "Wu Meng, Gu Jinke, Guo Runyu, Huang Yushen, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34" } ], "reference": [ { "type": "PubMed", "id": "27912063", "url": "https://glygen.org/publication/PubMed/27912063" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "High-resolution in situ structures of mammalian respiratory supercomplexes.", "journal": "Nature", "date": "2024", "authors": "Zheng Wan, Chai Pengxin, Zhu Jiapeng, Zhang Kai", "evidence": [ { "database": "UniProtKB", "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34" } ], "reference": [ { "type": "PubMed", "id": "38811722", "url": "https://glygen.org/publication/PubMed/38811722" } ] } ], "pathway": [ { "id": "ssc:100156967", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156967", "resource": "KEGG Pathway" }, { "id": "R-SSC-5628897", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "resource": "Reactome", "description": "TP53 Regulates Metabolic Genes" }, { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-9707564", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9707564", "resource": "Reactome", "description": "Cytoprotection by HMOX1" }, { "id": "R-SSC-9837999", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "resource": "Reactome", "description": "Mitochondrial protein degradation" }, { "id": "R-SSC-9864848", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "resource": "Reactome", "description": "Complex IV assembly" } ], "orthologs": [ { "uniprot_canonical_ac": "P00426-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGAAVRRCSVAAAAVARASPRGLLHPTPAPGQAAAVQSLRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV", "length": 152 }, "evidence": [ { "id": "F1SJ34", "url": "https://omabrowser.org/oma/group/F1SJ34/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P00427-1", "protein_name": "Cytochrome c oxidase subunit 6, mitochondrial", "gene_name": "COX6", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLSRAIFRNPVINRTLLRARPGAYHATRLTKNTFIQSRKYSDAHDEETFEEFTARYEKEFDEAYDLFEVQRVLNNCFSYDLVPAPAVIEKALRAARRVNDLPTAIRVFEALKYKVENEDQYKAYLDELKDVRQELGVPLKEELFPSSS", "length": 148 }, "evidence": [ { "id": "F1SJ34", "url": "https://omabrowser.org/oma/group/F1SJ34/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P11240-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "Cox5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLAAALRRCTAAAAARGLLHPVSAPSPAAAVCSIRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV", "length": 146 }, "evidence": [ { "id": "F1SJ34", "url": "https://omabrowser.org/oma/group/F1SJ34/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P12787-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "Cox5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLAAALRRCTAAAAARGLLHPASAPSPAAAVCSIRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV", "length": 146 }, "evidence": [ { "id": "F1SJ34", "url": "https://omabrowser.org/oma/group/F1SJ34/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20674-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLGAALRRCAVAATTRADPRGLLHSARTPGPAVAIQSVRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACRRLNDFASTVRILEVVKDKAGPHKEIYPYVIQELRPTLNELGISTPEELGLDKV", "length": 150 }, "evidence": [ { "id": "F1SJ34", "url": "https://omabrowser.org/oma/group/F1SJ34/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q94514-1", "protein_name": "Cytochrome c oxidase subunit 5A, mitochondrial", "gene_name": "COX5A", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLSITARNLASALRSSLVGTSSRVAAVRCLHGTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIALAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGIPTIEELGYDKPELALKSVYDA", "length": 149 }, "evidence": [ { "id": "F1SJ34", "url": "https://omabrowser.org/oma/group/F1SJ34/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34" } ], "pmid": "" }, { "name": "respiratory chain complex IV", "id": "GO:0045277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045277", "evidence": [ { "database": "UniProtKB", "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial electron transport, cytochrome c to oxygen", "id": "GO:0006123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006123", "evidence": [ { "database": "UniProtKB", "id": "F1SJ34", "url": "https://www.uniprot.org/uniprotkb/F1SJ34" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 30 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 3 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM20-1", "uniprot_ac": "F1SM20", "uniprot_id": "F1SM20_PIG", "mass": { "chemical_mass": 59053.0, "monoisotopic_mass": 59053.0 }, "refseq": { "ac": "NP_001265679", "name": "UDP glucuronosyltransferase 1 family, polypeptide A6 precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679" }, "gene_names": [ { "name": "UGT1A6", "type": "recommended", "evidence": [ { "id": "F1SM20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM20" } ] }, { "name": "UGT1A6", "type": "synonym", "evidence": [ { "id": "NP_001265679", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679" } ] }, { "name": "mpugt1A6", "type": "synonym", "evidence": [ { "id": "NP_001265679", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679" } ] } ], "protein_names": [ { "name": "UDP-glucuronosyltransferase", "type": "recommended", "evidence": [ { "id": "F1SM20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM20/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.17", "type": "synonym", "evidence": [ { "id": "F1SM20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM20/entry#names_and_taxonomy" } ] }, { "name": "UDP glucuronosyltransferase 1 family, polypeptide A6 precursor", "type": "synonym", "evidence": [ { "id": "NP_001265679", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679" } ] }, { "name": "UDP-glucuronosyltransferase 1-6 pseudogene", "type": "synonym", "evidence": [ { "id": "NP_001265679", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679" } ] }, { "name": "UDP-glucuronosyltransferase 1A1", "type": "synonym", "evidence": [ { "id": "NP_001265679", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679" } ] }, { "name": "UDP-glucuronosyltransferase 1A6", "type": "synonym", "evidence": [ { "id": "NP_001265679", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679" } ] } ], "function": [ { "annotation": "Minipig UGT1A6 was cloned and compared to human UGT1A6. The results suggest that the enzymatic properties of UGT1A6 enzymes are moderately different between humans and minipigs.", "evidence": [ { "database": "RefSeq", "id": "NP_001265679", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679" }, { "database": "PubMed", "id": "26134041", "url": "https://glygen.org/publication/PubMed/26134041" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM20", "url": "https://www.uniprot.org/uniprotkb/F1SM20" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UGT1A6", "url": "https://www.uniprot.org/uniprotkb/F1SM20", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000036274", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000036274", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03784", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03784", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152603", "url": "https://www.ncbi.nlm.nih.gov/gene/100152603", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152603", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152603", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WASWICC", "url": "https://omabrowser.org/oma/group/WASWICC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SM20", "url": "https://www.orthodb.org/?gene=F1SM20", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SM28", "url": "https://www.orthodb.org/?gene=F1SM28", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48043", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48043", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48043:SF161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48043:SF161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001265679", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "21032", "url": "https://www.rhea-db.org/rhea/21032", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "79955", "url": "https://www.rhea-db.org/rhea/79955", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B177", "url": "https://www.uniprot.org/uniprotkb/A0A287B177", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B177-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B177-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM17", "url": "https://www.uniprot.org/uniprotkb/F1SM17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM17-1", "url": "https://www.uniprot.org/uniprotkb/F1SM17-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM20", "url": "https://www.uniprot.org/uniprotkb/F1SM20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM20-1", "url": "https://www.uniprot.org/uniprotkb/F1SM20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM28", "url": "https://www.uniprot.org/uniprotkb/F1SM28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM28-1", "url": "https://www.uniprot.org/uniprotkb/F1SM28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAGSRGLRPLILGLLLCALGPTVSWGGKLLVIPVEGSHWLSMVGVIQQLQQKGHDTVVVAPDATMYIKEGAFYTLKTYPVPFRKEDLREAFVSLGHTIFENDPFLQRMLKIYKKVKKDSALLLSACSHLLHNKELMASLAASGFDAVFTDPFLPCGPIVAQYLGLPAVFFLNGLPCQLDFQGTQCPNPLSYVPRPLSGNSDHMTFLERVKNMLVALSEGFLCSAVYSPYAPLASEVLQRDVTVQDLMSSASVWLIRNDFVNNYPRPIMPNTVFIGGINCASKTPLSQEFEAYVNASGEHGIVVFSLGSMVSEIPEQKAMEIADALGKIPQTVLWRYTGPAPPNLAKNTKLVKWLPQNDLLGHPKARAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRMETRGAGVTLNVLEMTSKDLENALNTVIKDKSYKENIMRLSSLHKDRPIEPLDLAVFWVEFVMRHKGAPHLRPAAHDLTWYQYHSLDVIGFLLAVGLTVVFIAFKCCVFAYRKCFGKKGRVKKSHKSKTH", "length": 533, "header": "tr|F1SM20-1|F1SM20_PIG Isoform 1 of UDP-glucuronosyltransferase OS=Sus scrofa OX=9823 GN=UGT1A6 PE=1 SV=2 CANONICAL=F1SM20-1" }, "isoforms": [ { "isoform_ac": "A0A287B177-1", "url": "https://www.uniprot.org/uniprotkb/F1SM20/entry#A0A287B177-1", "sequence": { "sequence": "MAMGFQAPLPMLAGLLLCLCVVVPWAEGGKVLVVPMEGSHWLSMRKAVKELHARGHQAVVLSPEVNMHIKAEDFFTVKSYAIPYTQDEFDDLMLRHFHLLFEKVNFLTMFWTTMVSLKKVFLMFERSCEELLYNKDLIRDLNASSFDVVLTDPVYPCGAVLAKYLSIPAVFFLRSLPCDIDFEGTACPNPFSYVPKLLTMNSDHMTFFQRVKNMLYPLALRYICHVFVTPYAQMASKLLQREVSLVDVLSSASVWLFRGDFVMDYPRPIMPNMVFIGGINCANRKPLSQEFEAYVNASGEHGIVVFSLGSMVSEIPEQKAMEIADALGKIPQTVLWRYTGPAPPNLAKNTKLVKWLPQNDLLGHPKARAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRMETRGAGVTLNVLEMTSKDLENALNTVIKDKSYKENIMRLSSLHKDRPIEPLDLAVFWVEFVMRHKGAPHLRPAAHDLTWYQYHSLDVIGFLLAVGLTVVFIAFKCCVFAYRKCFGKKGRVKKSHKSKTH", "length": 534, "header": "tr|A0A287B177-1|F1SM20_PIG Computationally mapped isoform of UDP-glucuronosyltransferase OS=Sus scrofa OX=9823 GN=UGT1A6 PE=1 SV=2 CANONICAL=F1SM20-1" }, "locus": { "chromosome": "15", "start_pos": 134048124, "end_pos": 133998094, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047497.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047497.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049914.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049914.2" } ] } }, { "isoform_ac": "F1SM17-1", "url": "https://www.uniprot.org/uniprotkb/F1SM20/entry#F1SM17-1", "sequence": { "sequence": "MACLLRAFWAVSAAVLLSALWGTVAGDRLLVVPQDGSHWLSMKDIVVRLSEKGHEIVVVAPEINLLLTESKYYTRKIYPVPYDQEELEGRYRSFGRNHFSERWLLNAAQVEYRNNMIVINMYFLTCQSLLRDAATLSFLREAKFDALFTDPALPCGVILAEYLGLPSVYLFRGFPCSLENTFTRTPSPTSYVPRYYTAFSDRMTFPQRVANFLTRILENILLDLLYTKYEDLARDILKIEVDLPALYRKADIWLMRYDFVFEFPRPVMPNMVFIGGTNCKKVGILSQAPLPMLAGLLLCLCVVVPWAEGGKVLVVPMEGSHWLSMRKAVQELHARGHQAVVLSPEVNMHIKAEDFFTVKSYATPYTQDEFDDLMVRHLHLLFEKANFLTMFWTTMVSLKKVFLMFERSCEELLNNKDLIRDLNASSFDVVLTDPVYPCGAVLAKYLSIPAVFFLRSLPCDIDFEGTACPNPFSYVPRLLTMNSDHMTFFQRVKNMLYPLALKYICHVFVTPYAQMASKLLQREVSLVDVLSSASVWLFRGDFVMDYPRPVMPNMVFIGGINCANRKPLSQEFEAYVNASGEHGIVVFSLGSMVSEIPEQKAMEIADALGKIPQTVLWRYTGPAPPNLAKNTKLVKWLPQNDLLGHPKARAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRMETRGAGVTLNVLEMTSKDLENALNTVIKDKSYKENIMRLSSLHKDRPIEPLDLAVFWVEFVMRHKGAPHLRPAAHDLTWYQYHSLDVIGFLLAVGLTVVFIAFKCCVFAYRKCFGKKGRVKKSHKSKTH", "length": 815, "header": "tr|F1SM17-1|F1SM17_PIG Computationally mapped isoform of glucuronosyltransferase OS=Sus scrofa OX=9823 GN=UGT1A6 PE=1 SV=3 CANONICAL=F1SM20-1" }, "locus": { "chromosome": "15", "start_pos": 134048124, "end_pos": 133981061, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017765.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017765.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017284.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017284.3" } ] } }, { "isoform_ac": "F1SM20-1", "url": "https://www.uniprot.org/uniprotkb/F1SM20/entry#F1SM20-1", "sequence": { "sequence": "MTAGSRGLRPLILGLLLCALGPTVSWGGKLLVIPVEGSHWLSMVGVIQQLQQKGHDTVVVAPDATMYIKEGAFYTLKTYPVPFRKEDLREAFVSLGHTIFENDPFLQRMLKIYKKVKKDSALLLSACSHLLHNKELMASLAASGFDAVFTDPFLPCGPIVAQYLGLPAVFFLNGLPCQLDFQGTQCPNPLSYVPRPLSGNSDHMTFLERVKNMLVALSEGFLCSAVYSPYAPLASEVLQRDVTVQDLMSSASVWLIRNDFVNNYPRPIMPNTVFIGGINCASKTPLSQEFEAYVNASGEHGIVVFSLGSMVSEIPEQKAMEIADALGKIPQTVLWRYTGPAPPNLAKNTKLVKWLPQNDLLGHPKARAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRMETRGAGVTLNVLEMTSKDLENALNTVIKDKSYKENIMRLSSLHKDRPIEPLDLAVFWVEFVMRHKGAPHLRPAAHDLTWYQYHSLDVIGFLLAVGLTVVFIAFKCCVFAYRKCFGKKGRVKKSHKSKTH", "length": 533, "header": "tr|F1SM20-1|F1SM20_PIG Isoform 1 of UDP-glucuronosyltransferase OS=Sus scrofa OX=9823 GN=UGT1A6 PE=1 SV=2 CANONICAL=F1SM20-1" }, "locus": { "chromosome": "15", "start_pos": 134048124, "end_pos": 134033825, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017762.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017762.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017281.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017281.2" } ] } }, { "isoform_ac": "F1SM28-1", "url": "https://www.uniprot.org/uniprotkb/F1SM20/entry#F1SM28-1", "sequence": { "sequence": "MAPVVLTRFLPLCVCLLLSPGFAEAGKLLVVPMDGSHWFTMRSVVEKLIHRGHEVVLVTPEVSWQLTNSFNMTVKTYSTTYTLEDLNREFQIFSDFQWKARQMSMFSMLMSESTKFFDYFFSHCGSLFNDTKLVKYIEESSFDAVFLDPFDMCGLIVAKYFSLPAVVFTRGPFCHHLEESTQCPMPLSYVPRELSAFSDVMTFGERLRNHIWHLEERLFCHYFVKRALEIASEIFQTKVTAYDLYSQASVWLLRTDFVLDYPKPVMPNMIFIGGINCHEGKPLPKEFEAYVNASGEHGIVVFSLGSMVSEIPEQKAMEIADALGKIPQTVLWRYTGPAPPNLAKNTKLVKWLPQNDLLGHPKARAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRMETRGAGVTLNVLEMTSKDLENALNTVIKDKSYKENIMRLSSLHKDRPIEPLDLAVFWVEFVMRHKGAPHLRPAAHDLTWYQYHSLDVIGFLLAVGLTVVFIAFKCCVFAYRKCFGKKGRVKKSHKSKTH", "length": 530, "header": "tr|F1SM28-1|F1SM28_PIG Computationally mapped isoform of UDP-glucuronosyltransferase OS=Sus scrofa OX=9823 GN=UGT1A6 PE=1 SV=4 CANONICAL=F1SM20-1" }, "locus": { "chromosome": "15", "start_pos": 134048124, "end_pos": 133968861, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017754.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017754.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017273.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017273.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 23, "start_aa": "Thr", "end_pos": 23, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr23", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "Molecular cloning and functional analysis of minipig UDP-glucuronosyltransferase 1A6.", "journal": "Xenobiotica; the fate of foreign compounds in biological systems", "date": "2016", "authors": "Miyake Yuuka, Hirose Riho, Isobe Takashi, Hanioka Nobumitsu", "evidence": [ { "database": "RefSeq", "id": "NP_001265679", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001265679" } ], "reference": [ { "type": "PubMed", "id": "26134041", "url": "https://glygen.org/publication/PubMed/26134041" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B177", "url": "https://www.uniprot.org/uniprotkb/A0A287B177" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152603", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152603", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q6ZQM8-1", "protein_name": "UDP-glucuronosyltransferase 1A7", "gene_name": "Ugt1a7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPADFPASLPLCVCLLLASGLAQAGRLLVVPMDGSHWFTMQTVVEKLLHKGHEVVVVVPEVSWQLTKPLNFVVKTYAVSHTQEDLNREFKIFIDAQWKSQQEGGILPLLDSPAKGFFELLFSHCRSLFNDKKLVEYLKQTSFDAVFLDPFDVCGLTVAKYFSLPSVVFSRGIFCHYLEDAAQCPSPPSYIPRMLLKFTDTMTFKERTRNLLAYMGERAFCHKFFKSAADIASEVLQTPVTMTDLFSPVSIWLLRTDFVLEFPRPVMPNVIYIGGINCHQGKPLSKEFEAYVNASGEHGIVVFSLGSMVSEIPEKKAMEIAEALGRIPQTVLWRYTGTRPSNLAKNTILVKWLPQNDLLGHPKTRAFITHSGSHGIYEGICNGVPMVMMPLFGDQMDNAKRMETRGAGVTLNVLEMTADDLENALKTVINNKSYKENIMRLSSLHKDRPIEPLDLAVFWVEYVMRHKGAPHLRPAAHDLTWYQYHSLDVIGFLLAIVLTVVFIVFKCCAYGCRKCFGGKGRVKKSHKSKTH", "length": 531 }, "evidence": [ { "id": "F1SM20", "url": "https://omabrowser.org/oma/group/F1SM20/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HAW8-1", "protein_name": "UDP-glucuronosyltransferase 1A10", "gene_name": "UGT1A10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARAGWTSPVPLCVCLLLTCGFAEAGKLLVVPMDGSHWFTMQSVVEKLILRGHEVVVVMPEVSWQLERSLNCTVKTYSTSYTLEDQNREFMVFAHAQWKAQAQSIFSLLMSSSSGFLDLFFSHCRSLFNDRKLVEYLKESSFDAVFLDPFDTCGLIVAKYFSLPSVVFTRGIFCHHLEEGAQCPAPLSYVPNDLLGFSDAMTFKERVWNHIVHLEDHLFCQYLFRNALEIASEILQTPVTAYDLYSHTSIWLLRTDFVLDYPKPVMPNMIFIGGINCHQGKPLPMEFEAYINASGEHGIVVFSLGSMVSEIPEKKAMAIADALGKIPQTVLWRYTGTRPSNLANNTILVKWLPQNDLLGHPMTRAFITHAGSHGVYESICNGVPMVMMPLFGDQMDNAKRMETKGAGVTLNVLEMTSEDLENALKAVINDKSYKENIMRLSSLHKDRPVEPLDLAVFWVEFVMRHKGAPHLRPAAHDLTWYQYHSLDVIGFLLAVVLTVAFITFKCCAYGYRKCLGKKGRVKKAHKSKTH", "length": 530 }, "evidence": [ { "id": "F1SM20", "url": "https://omabrowser.org/oma/group/F1SM20/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SM20", "url": "https://www.uniprot.org/uniprotkb/F1SM20" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "glucuronosyltransferase activity", "id": "GO:0015020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015020", "evidence": [ { "database": "UniProtKB", "id": "F1SM20", "url": "https://www.uniprot.org/uniprotkb/F1SM20" } ], "pmid": "" }, { "name": "UDP-glycosyltransferase activity", "id": "GO:0008194", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008194", "evidence": [ { "database": "UniProtKB", "id": "F1SM20", "url": "https://www.uniprot.org/uniprotkb/F1SM20" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 295, "end_pos": 297, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "21032", "name": "", "equation": "glucuronate acceptor + UDP-alpha-D-glucuronate = acceptor beta-D-glucuronoside + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "21032", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/21032" } ] }, { "id": "79955", "name": "", "equation": "(E)-ferulate + UDP-alpha-D-glucuronate = (E)-ferulic acid beta-D-glucuronate ester + UDP", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "79955", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/79955" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 23 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 295, "end_pos": 297 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHW8-1", "uniprot_ac": "F1SHW8", "uniprot_id": "F1SHW8_PIG", "mass": { "chemical_mass": 58193.0, "monoisotopic_mass": 58193.0 }, "refseq": { "ac": "XP_013852782", "name": "signal transducing adapter molecule 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852782" }, "gene_names": [ { "name": "STAM2", "type": "recommended", "evidence": [ { "id": "F1SHW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ] }, { "name": "STAM2", "type": "synonym", "evidence": [ { "id": "XP_013852782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852782" } ] } ], "protein_names": [ { "name": "Signal transducing adaptor molecule 2", "type": "synonym", "evidence": [ { "id": "F1SHW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHW8/entry#names_and_taxonomy" } ] }, { "name": "signal transducing adapter molecule 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013852782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852782" } ] } ], "function": [ { "annotation": "Involved in intracellular signal transduction mediated by cytokines and growth factors. Upon IL-2 and GM-CSL stimulation, it plays a role in signaling leading to DNA synthesis and MYC induction. May also play a role in T-cell development. Involved in down-regulation of receptor tyrosine kinase via multivesicular body (MVBs) when complexed with HGS (ESCRT-0 complex). The ESCRT-0 complex binds ubiquitin and acts as a sorting machinery that recognizes ubiquitinated receptors and transfers them to further sequential lysosomal sorting/trafficking processes.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B4G2", "url": "https://www.uniprot.org/uniprotkb/A0A287B4G2#function" }, { "database": "UniProtKB", "id": "ARBA00043869", "url": "https://www.uniprot.org/uniprotkb/ARBA00043869#function" }, { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STAM2", "url": "https://www.uniprot.org/uniprotkb/F1SHW8", "locus": { "chromosome": "15", "start_pos": 168657, "end_pos": 115404, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016399", "url": "https://www.ensembl.org/id/ENSSSCG00000016399" } ] } } ], "crossref": [ { "id": "F1SHW8", "url": "https://alphafold.ebi.ac.uk/entry/F1SHW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016399", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016399", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11963", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11963", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16999", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16999", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21390", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21390", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157042", "url": "https://www.ncbi.nlm.nih.gov/gene/100157042", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047493", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047493", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050670", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050670", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157042", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157042", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNTSEDW", "url": "https://omabrowser.org/oma/group/CNTSEDW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHW8", "url": "https://www.orthodb.org/?gene=F1SHW8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45929", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45929", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45929:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45929:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00790", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00790", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02809", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02809", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-182971", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-182971", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807004", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807004", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8856825", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8856828", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013420", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013420", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-917729", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-917729", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013852782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852782", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B4G2", "url": "https://www.uniprot.org/uniprotkb/A0A287B4G2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4G2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHW8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQTVSAAAKNGMSSNKNKEDEDIAKAIELSLQEQKQQHTETKSLYPSAEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIESEAAAVDKLNIIEEEEEENKKSEPEPVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELSELNVKVLEALELYNKLVNESPVYSVYSKLHHSGHYPPSSAGVPVQTYPVQPHGGNYMGQSIHQVTVAQSYSLGPDQIGPLRSLPPSVNSSVTTQPGQTPYLSAGQDTVSNSAYMNQNSNLQSATGTAAYAQQMGMSVDMSSYQNTTSNLPQLAGFPVAVPAHSIAQQQANYHQQQPLL", "length": 526, "header": "tr|F1SHW8-1|F1SHW8_PIG Isoform 1 of Signal transducing adaptor molecule 2 OS=Sus scrofa OX=9823 GN=STAM2 PE=3 SV=4 CANONICAL=F1SHW8-1" }, "isoforms": [ { "isoform_ac": "A0A287B4G2-1", "url": "https://www.uniprot.org/uniprotkb/F1SHW8/entry#A0A287B4G2-1", "sequence": { "sequence": "MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQTVSAAAKNGMSSNKNKEDEDIAKAIELSLQEQKQQHTETKSLYPSAEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIESEAAAVDKLNIIEEEEEENKKSEPEPVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELSELNVKVLEALELYNKLVNESPVYSVYSKLHHSGHYPPSSAGVPVQTYPVQPHGGNYMGQSIHQVTVAQSYSLGPDQIGPLRSLPPSVNSSVTTQPGQTPYLSAGQDTVSNSAYMNQNSNLQSATGTAAYAQQMGMSVDMSSYQNTTSNLPQLAGFPVAVPAHSIAQQQANYHQQQPLL", "length": 517, "header": "tr|A0A287B4G2-1|F1SHW8_PIG Computationally mapped isoform of Signal transducing adaptor molecule 2 OS=Sus scrofa OX=9823 GN=STAM2 PE=3 SV=2 CANONICAL=F1SHW8-1" }, "locus": { "chromosome": "15", "start_pos": 165485, "end_pos": 115490, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049379.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049379.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050994.2", "url": "https://www.ensembl.org/id/ENSSSCP00000050994.2" } ] } }, { "isoform_ac": "F1SHW8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHW8/entry#F1SHW8-1", "sequence": { "sequence": "MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQTVSAAAKNGMSSNKNKEDEDIAKAIELSLQEQKQQHTETKSLYPSAEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIESEAAAVDKLNIIEEEEEENKKSEPEPVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELSELNVKVLEALELYNKLVNESPVYSVYSKLHHSGHYPPSSAGVPVQTYPVQPHGGNYMGQSIHQVTVAQSYSLGPDQIGPLRSLPPSVNSSVTTQPGQTPYLSAGQDTVSNSAYMNQNSNLQSATGTAAYAQQMGMSVDMSSYQNTTSNLPQLAGFPVAVPAHSIAQQQANYHQQQPLL", "length": 526, "header": "tr|F1SHW8-1|F1SHW8_PIG Isoform 1 of Signal transducing adaptor molecule 2 OS=Sus scrofa OX=9823 GN=STAM2 PE=3 SV=4 CANONICAL=F1SHW8-1" }, "locus": { "chromosome": "15", "start_pos": 165485, "end_pos": 115490, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017856.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017856.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017375.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017375.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B4G2", "url": "https://www.uniprot.org/uniprotkb/A0A287B4G2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157042", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157042", "resource": "KEGG Pathway" }, { "id": "R-SSC-182971", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-182971", "resource": "Reactome", "description": "EGFR downregulation" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-6807004", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807004", "resource": "Reactome", "description": "Negative regulation of MET activity" }, { "id": "R-SSC-8856825", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "resource": "Reactome", "description": "Cargo recognition for clathrin-mediated endocytosis" }, { "id": "R-SSC-8856828", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "resource": "Reactome", "description": "Clathrin-mediated endocytosis" }, { "id": "R-SSC-9013420", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013420", "resource": "Reactome", "description": "RHOU GTPase cycle" }, { "id": "R-SSC-917729", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-917729", "resource": "Reactome", "description": "Endosomal Sorting Complex Required For Transport (ESCRT)" } ], "orthologs": [ { "uniprot_canonical_ac": "A8WI00-1", "protein_name": "Signal transducing adapter molecule 2", "gene_name": "stam2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPLFGQNPFDQDVEKATSETNTVEDWGLIMDICDRVGTAPNGAKDCLRSIMKRVNHKVPHVAMQALTLLGACVANSGKIFHLEICSREFASEVRGVLNRAHPKVNEKLKALMAEWAEDFQKDPQLSLIGATIKSLKEEGVTFPTANPQSSSTKPSSTPATSRASADDDLAKAIELSLQEQKQQTETRPLTVIADPPYNTNGGKESRKVRALYDFEAAEDNELTFKAGELVIILDDSDPNWWKGENHRGVGLFPSNFVTTNLNAEPDPVMYVEKTVVPEEPIVEVKAEPEPVYIDEEKMDKTLYLLQNTDPADATPDGPELLTLEDACEKMNPLIDEKLQEIDRKHSELSELNVKVLEALELYNQLMNEAPLYNAYSKMQSLQGTYPAAPPHLSMQGYQPSGAYMSAGVPQGYSLTDQAGPLCSMPPSINSVAPSQPAQPSYISGPMNAPYVNQAPGGPTPYPPQMGVAMDMSAYQNANPGLPPTSYPMSAPAQPAPQQQQAAFYQQPLL", "length": 509 }, "evidence": [ { "id": "F1SHW8", "url": "https://omabrowser.org/oma/group/F1SHW8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O75886-1", "protein_name": "Signal transducing adapter molecule 2", "gene_name": "STAM2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGITFPPAGSQTVSAAAKNGTSSNKNKEDEDIAKAIELSLQEQKQQHTETKSLYPSSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETEAAAVDKLNVIDDDVEEIKKSEPEPVYIDEDKMDRALQVLQSIDPTDSKPDSQDLLDLEDICQQMGPMIDEKLEEIDRKHSELSELNVKVLEALELYNKLVNEAPVYSVYSKLHPPAHYPPASSGVPMQTYPVQSHGGNYMGQSIHQVTVAQSYSLGPDQIGPLRSLPPNVNSSVTAQPAQTSYLSTGQDTVSNPTYMNQNSNLQSATGTTAYTQQMGMSVDMSSYQNTTSNLPQLAGFPVTVPAHPVAQQHTNYHQQPLL", "length": 525 }, "evidence": [ { "id": "F1SHW8", "url": "https://omabrowser.org/oma/group/F1SHW8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O88811-1", "protein_name": "Signal transducing adapter molecule 2", "gene_name": "Stam2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDRVGSTPSGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRSVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKSMKEEGVTFPSAGSQTVAAAAKNGTSLNKNKEDEDIAKAIELSLQEQKQQYTETKALYPPAESQLNNKAARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLSTEVETATVDKLNVIDDDVEEIKKSEPEPVYIDEGKMDRALQILQSIDPKESKPDSQDLLDLEDVCQQMGPMIDEKLEEIDRKHSELSELNVKVLEALDLYNKLVNEAPVYSVYSKLHPAHYPPAAAGVPVQTYPVQSHGGNYLGHGIHQVSVAQNYNLGPDPMGSLRSLPPNMNSVTAHTVQPPYLSTGQDTVSNPSYMNQSSRLQAAAGTAAYTQPVGMSTDVSSFQNTASGLPQLAGFPVAVPAPVAAQPQASYHQQPLL", "length": 523 }, "evidence": [ { "id": "F1SHW8", "url": "https://omabrowser.org/oma/group/F1SHW8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5XHY7-1", "protein_name": "Signal transducing adapter molecule 2", "gene_name": "Stam2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLFTANPFEQDVEKATNEYNTTEDWSLIMDICDRVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDPQFSLISATIKAMKEEGVTFPSAGSQTVSAAAKNGASLNKNKEDEDIAKAIELSLQEQKQQYPETKALCPPAESQLSNKVARRVRALYDFEAVEDNELTFKHGEIITVLDDSDANWWEGENHRGAGLFPSSFVTTDLSTEVEAATVDKSNVIDDDVEEIKKSEPEPVYIDEGKMDRALQILQSIDPKDPKPDSQDLLDLEDICQQMGPMIDEKLEEIDRRHSELSELNVKVLEALELYNKLVNEAPMYSVYSKLHPAPYSATAAGVPVQTYPVQSHGGNYLGHGIHQVPVAQSYNLGPDPMGSSRSLPPNMNSVTAHTIQPPYLSTGQDAVSNPSYMTQSSHLQAAAGTAAYTPAMGVSADLSSFQSTASGLPQLAGFPVAVPVPPAPQPQASYHQQPLL", "length": 523 }, "evidence": [ { "id": "F1SHW8", "url": "https://omabrowser.org/oma/group/F1SHW8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "multivesicular body assembly", "id": "GO:0036258", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036258", "evidence": [ { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ], "pmid": "" }, { "name": "macroautophagy", "id": "GO:0016236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016236", "evidence": [ { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "early endosome membrane", "id": "GO:0031901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031901", "evidence": [ { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ], "pmid": "" }, { "name": "endocytic vesicle", "id": "GO:0030139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030139", "evidence": [ { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphatidylinositol binding", "id": "GO:0035091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035091", "evidence": [ { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ], "pmid": "" }, { "name": "ubiquitin binding", "id": "GO:0043130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043130", "evidence": [ { "database": "UniProtKB", "id": "F1SHW8", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" }, { "start_pos": 492, "end_pos": 494, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHW8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 526, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHW8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHW8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 202, "end_pos": 261, "start_aa": "Lys", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHW8" }, { "id": "PS50179", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50179" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VHS", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 144, "start_aa": "Ala", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 21, "end_pos": 23 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 436, "end_pos": 438 }, { "start_pos": 492, "end_pos": 494 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPG5-1", "uniprot_ac": "F1SPG5", "uniprot_id": "F1SPG5_PIG", "mass": { "chemical_mass": 131231.0, "monoisotopic_mass": 131231.0 }, "refseq": { "ac": "XP_020925041", "name": "fibulin-2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925041" }, "gene_names": [ { "name": "FBLN2", "type": "recommended", "evidence": [ { "id": "F1SPG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPG5" } ] }, { "name": "FBLN2", "type": "synonym", "evidence": [ { "id": "XP_020925041", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925041" } ] } ], "protein_names": [ { "name": "Fibulin-2", "type": "recommended", "evidence": [ { "id": "F1SPG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPG5/entry#names_and_taxonomy" } ] }, { "name": "fibulin-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020925041", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925041" } ] } ], "function": [ { "annotation": "Its binding to fibronectin and some other ligands is calcium dependent. May act as an adapter that mediates the interaction between FBN1 and ELN.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RB13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB13#function" }, { "database": "UniProtKB", "id": "ARBA00053524", "url": "https://www.uniprot.org/uniprotkb/ARBA00053524#function" }, { "database": "UniProtKB", "id": "F1SPG5", "url": "https://www.uniprot.org/uniprotkb/F1SPG5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPG5", "url": "https://www.uniprot.org/uniprotkb/F1SPG5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBLN2", "url": "https://www.uniprot.org/uniprotkb/F1SPG5", "locus": { "chromosome": "13", "start_pos": 70757265, "end_pos": 70830388, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011609", "url": "https://www.ensembl.org/id/ENSSSCG00000011609" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011609", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011609", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00017", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00017", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100621722", "url": "https://www.ncbi.nlm.nih.gov/gene/100621722", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026823", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026823", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621722", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621722", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MNTCRDI", "url": "https://omabrowser.org/oma/group/MNTCRDI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPG5", "url": "https://www.orthodb.org/?gene=F1SPG5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24034", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24034", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24034:SF158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24034:SF158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01821", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01821", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12662", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12662", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14670", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14670", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22914", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22914", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24532", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24532", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020925041", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925041", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B5Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5Q1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5Q1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RB13", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RB13-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPG5", "url": "https://www.uniprot.org/uniprotkb/F1SPG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPG5-1", "url": "https://www.uniprot.org/uniprotkb/F1SPG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLLREPGGTWLALALALALGTGSGMAAPGQDCTGIECPPLENCIEEALEPGECCATCVQRGCACEGYQYYDCLQGGFVRGRVPAGQSYFVDFGSTECSCPPGGGKISCQFMLCPELPPNCIEAVVVADSCPQCGQVGCIHSGRKYAAGHTVHLSPCRACHCPDAGGELICYQLPDCDGDAEAELATATGNFSDAEEGDPERHYEDPYSYDQEVAEAEAAEALAGELQAGTGGPAALGGGRQPPSSIQATPWPVALPRPTAATALGPPAPVQAKARRVTEDRQEREELTHREQPAAGGPRGLGGLPTAGPVGPDLPVQEEGAEARAWPEENLIPDAQATPGSTGQEGAGPVPASSTPSVLSSQAASSPEVPTEPSTHTSLTIPRQEAAQAPPTQEVPKQPPVLPRSQPEDPDPNSVHSVPRGDPEVSTKDLIETCCAAGQQWAIDNDECLDIPESGAEGDVCRTAQKHCCVSYLKEKSCVAGVMGAKEGEACGDEDNDTCSVSLYKQCCDCCGLGLRVRAEGQACESNPNLGYPCNHVMLSCCEGEDPLIVPEVRRPPEPEAAPQRVSEAELASREALSLGTETELPNSLPGDDQDECLLLPGELCQHLCINTVGSYRCACFPGFSLQDDRRTCRPDGGRPQPETTEESALRPESSQVAPNTIALPVPQPNTCKDNGPCKQVCTVIRDTVMCSCFPGYAIMADGVSCEDQDECLLGAHDCSRRQFCVNTLGSFYCVNHTVLCAEGFLLNPHRKCVDINECVTDMHTCSRSEHCVNTVGSFRCYKALTCEPGYMLKDGECTDVDECELGTHSCQVGFTCQNTKGSFYCQPRQRCMDGFLQDPEGNCVDINECTSLSEPCQPGFSCVNTVGSYTCQRNPLICGRGYHASQDGTKCVDVNECETGVHHCSETQVCHNLPGSYRCDCKAGFQRDAFGRTCIDVNECWASPSRLCQHTCENTLGSYRCSCASGFVLAADGKHCEDVNECEAQRCSQECANIYGSYQCYCRQGYQLAEDGHTCIDIDECAQGAGVLCTFRCINVPGSYQCACPERGYTMTANGRSCKDLDECALGTHNCSEAETCHNIQGSFRCLRFDCPPNYVRVSETKCERTLCQDFVECQNAPARITHYRLNFQTGLLVPAHIFRISPVPAFAGDTIALTITKGNEEGYFGTRRLNAYTGVVFLQRSVREPRDFALDVEMKLWRQGSVTTFLAKMHIFFTTFAL", "length": 1221, "header": "tr|F1SPG5-1|F1SPG5_PIG Isoform 1 of Fibulin-2 OS=Sus scrofa OX=9823 GN=FBLN2 PE=1 SV=3 CANONICAL=F1SPG5-1" }, "isoforms": [ { "isoform_ac": "A0A287B5Q1-1", "url": "https://www.uniprot.org/uniprotkb/F1SPG5/entry#A0A287B5Q1-1", "sequence": { "sequence": "MVLLREPGGTWLALALALALGTGSGMAAPGQDCTGIECPPLENCIEEALEPGECCATCVQRGCACEGYQYYDCLQGGFVRGRVPAGQSYFVDFGSTECSCPPGGGKISCQFMLCPELPPNCIEAVVVADSCPQCGQVGCIHSGRKYAAGHTVHLSPCRACHCPDAGGELICYQLPDCDGDAEAELATATGNFSDAEEGDPERHYEDPYSYDQEVAEAEAAEALAGELQAGTGGPAALGGGRQPPSSIQATPWPVALPRPTAATALGPPAPVQAKARRVTEDRQEREELTHREQPAAGGPRGLGGLPTAGPVGPDLPVQEEGAEARAWPEENLIPDAQATPGSTGQEGAGPVPASSTPSVLSSQAASSPEVPTEPSTHTSLTIPRQEAAQAPPTQEVPKQPPVLPRSQPEDPDPNSVHSVPRGDPEVSTKDLIETCCAAGQQWAIDNDECLDIPESGAEGDVCRTAQKHCCVSYLKEKSCVAGVMGAKEGEACGDEDNDTCSVSLYKQCCDCCGLGLRVRAEGQACESNPNLGYPCNHVMLSCCEGEDPLIVPEVRRPPEPEAAPQRVSEAELASREALSLGTETELPNSLPGDDQDECLLLPGELCQHLCINTVGSYRCACFPGFSLRCSWAEDHGVLPLPQPHTLEPADNGPCKQVCTVIRDTVMCSCFPGYAIMADGVSCEDINECVTDMHTCSRSEHCVNTVGSFRCYKALTCEPGYMLKDGECTDVDECELGTHSCQVGFTCQNTKGSFYCQPRQRCMDGFLQDPEGNCVDINECTSLSEPCQPGFSCVNTVGSYTCQRNPLICGRGYHASQDGTKCVDVNECETGVHHCSETQVCHNLPGSYRCDCKAGFQRDAFGRTCIDVNECEAQRCSQECANIYGSYQCYCRQGYQLAEDGHTCIDIDECAQGAGVLCTFRCINVPGSYQCACPERGYTMTANGRSCKDLDECALGTHNCSEAETCHNIQGSFRCLRFDCPPNYVRVSETKCERTLCQDFVECQNAPARITHYRLNFQTGLLVPAHIFRISPVPAFAGDTIALTITKGNEEGYFGTRRLNAYTGVVFLQRSVREPRDFALDVEMKLWRQGSVTTFLAKMHIFFTTFAL", "length": 1107, "header": "tr|A0A287B5Q1-1|F1SPG5_PIG Computationally mapped isoform of Fibulin-2 OS=Sus scrofa OX=9823 GN=FBLN2 PE=1 SV=2 CANONICAL=F1SPG5-1" }, "locus": { "chromosome": "13", "start_pos": 70807326, "end_pos": 70757704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047627.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047627.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051424.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051424.2" } ] } }, { "isoform_ac": "A0A5G2RB13-1", "url": "https://www.uniprot.org/uniprotkb/F1SPG5/entry#A0A5G2RB13-1", "sequence": { "sequence": "MVLLREPGGTWLALALALALGTGSGMAAPGQDCTGIECPPLENCIEEALEPGECCATCVQRGCACEGYQYYDCLQGGFVRGRVPAGQSYFVDFGSTECSCPPGGGKISCQFMLCPELPPNCIEAVVVADSCPQCGQVGCIHSGRKYAAGHTVHLSPCRACHCPDAGGELICYQLPDCDGDAEAELATATGNFSDAEEGDPERHYEDPYSYDQEVAEAEAAEALAGELQAGTGGPAALGGGRQPPSSIQATPWPVALPRPTAATALGPPAPVQAKARRVTEDRQEREELTHREQPAAGGPRGLGGLPTAGPVGPDLPVQEEGAEARAWPEENLIPDAQATPGSTGQEGAGPVPASSTPSVLSSQAASSPEVPTEPSTHTSLTIPRQEAAQAPPTQEVPKQPPVLPRSQPEDPDPNSVHSVPRGDPEVSTKDLIETCCAAGQQWAIDNDECLDIPESGAEGDVCRTAQKHCCVSYLKEKSCVAGVMGAKEGEACGDEDNDTCSVSLYKQCCDCCGLGLRVRAEGQACESNPNLGYPCNHVMLSCCEGEDPLIVPEVRRPPEPEAAPQRVSEAELASREALSLGTETELPNSLPGDDQDECLLLPGELCQHLCINTVGSYRCACFPGFSLRCSWAEDHGVLPLPQPHTLEPADNGPCKQVCTVIRDTVMCSCFPGYAIMADGVSCEDQDECLLGAHDCSRRQFCVNTLGSFYCVNHTVLCAEGFLLNPHRKCVDINECVTDMHTCSRSEHCVNTVGSFRCYKALTCEPGYMLKDGECTDVDECELGTHSCQVGFTCQNTKGSFYCQPRQRCMDGFLQDPEGNCVDINECTSLSEPCQPGFSCVNTVGSYTCQRNPLICGRGYHASQDGTKCVDVNECETGVHHCSETQVCHNLPGSYRCDCKAGFQRDAFGRTCIDVNECWASPSRLCQHTCENTLGSYRCSCASGFVLAADGKHCEDVNECEAQRCSQECANIYGSYQCYCRQGYQLAEDGHTCIDIDECAQGAGVLCTFRCINVPGSYQCACPERGYTMTANGRSCKDLDECALGTHNCSEAETCHNIQGSFRCLRFDCPPNYVRVSETKCERTLCQDFVECQNAPARITHYRLNFQTGLLVPAHIFRISPVPAFAGDTIALTITKGNEEGYFGTRRLNAYTGVVFLQRSVREPRDFALDVEMKLWRQGSVTTFLAKMHIFFTTFAL", "length": 1196, "header": "tr|A0A5G2RB13-1|F1SPG5_PIG Computationally mapped isoform of Fibulin-2 OS=Sus scrofa OX=9823 GN=FBLN2 PE=1 SV=1 CANONICAL=F1SPG5-1" }, "locus": { "chromosome": "13", "start_pos": 70807326, "end_pos": 70757704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088600.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088600.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074197.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074197.1" } ] } }, { "isoform_ac": "F1SPG5-1", "url": "https://www.uniprot.org/uniprotkb/F1SPG5/entry#F1SPG5-1", "sequence": { "sequence": "MVLLREPGGTWLALALALALGTGSGMAAPGQDCTGIECPPLENCIEEALEPGECCATCVQRGCACEGYQYYDCLQGGFVRGRVPAGQSYFVDFGSTECSCPPGGGKISCQFMLCPELPPNCIEAVVVADSCPQCGQVGCIHSGRKYAAGHTVHLSPCRACHCPDAGGELICYQLPDCDGDAEAELATATGNFSDAEEGDPERHYEDPYSYDQEVAEAEAAEALAGELQAGTGGPAALGGGRQPPSSIQATPWPVALPRPTAATALGPPAPVQAKARRVTEDRQEREELTHREQPAAGGPRGLGGLPTAGPVGPDLPVQEEGAEARAWPEENLIPDAQATPGSTGQEGAGPVPASSTPSVLSSQAASSPEVPTEPSTHTSLTIPRQEAAQAPPTQEVPKQPPVLPRSQPEDPDPNSVHSVPRGDPEVSTKDLIETCCAAGQQWAIDNDECLDIPESGAEGDVCRTAQKHCCVSYLKEKSCVAGVMGAKEGEACGDEDNDTCSVSLYKQCCDCCGLGLRVRAEGQACESNPNLGYPCNHVMLSCCEGEDPLIVPEVRRPPEPEAAPQRVSEAELASREALSLGTETELPNSLPGDDQDECLLLPGELCQHLCINTVGSYRCACFPGFSLQDDRRTCRPDGGRPQPETTEESALRPESSQVAPNTIALPVPQPNTCKDNGPCKQVCTVIRDTVMCSCFPGYAIMADGVSCEDQDECLLGAHDCSRRQFCVNTLGSFYCVNHTVLCAEGFLLNPHRKCVDINECVTDMHTCSRSEHCVNTVGSFRCYKALTCEPGYMLKDGECTDVDECELGTHSCQVGFTCQNTKGSFYCQPRQRCMDGFLQDPEGNCVDINECTSLSEPCQPGFSCVNTVGSYTCQRNPLICGRGYHASQDGTKCVDVNECETGVHHCSETQVCHNLPGSYRCDCKAGFQRDAFGRTCIDVNECWASPSRLCQHTCENTLGSYRCSCASGFVLAADGKHCEDVNECEAQRCSQECANIYGSYQCYCRQGYQLAEDGHTCIDIDECAQGAGVLCTFRCINVPGSYQCACPERGYTMTANGRSCKDLDECALGTHNCSEAETCHNIQGSFRCLRFDCPPNYVRVSETKCERTLCQDFVECQNAPARITHYRLNFQTGLLVPAHIFRISPVPAFAGDTIALTITKGNEEGYFGTRRLNAYTGVVFLQRSVREPRDFALDVEMKLWRQGSVTTFLAKMHIFFTTFAL", "length": 1221, "header": "tr|F1SPG5-1|F1SPG5_PIG Isoform 1 of Fibulin-2 OS=Sus scrofa OX=9823 GN=FBLN2 PE=1 SV=3 CANONICAL=F1SPG5-1" }, "locus": { "chromosome": "13", "start_pos": 70807326, "end_pos": 70757704, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012706.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012706.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012373.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012373.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 339, "start_aa": "Thr", "end_pos": 339, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr339", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 356, "start_aa": "Thr", "end_pos": 356, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr356", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B5Q1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5Q1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621722", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621722", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A720-1", "protein_name": "Fibulin-2", "gene_name": "Fbln2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TMLLQESAGVWLALALVTALTLSPSMGVPWQDCTGAECPPLENCIEEALEPGACCATCVQQGCACEGYQYYDCVQGGFVDGRVPAGQSYFVDFGSTECSCPPGGGKISCQFMLCPELPPNCIEAVVVADSCPQCGQVGCVHSGRKYAAGHTVHLSSCRACHCPDAGGELICYQLPGCHGNFSDAEEGDSERQYEDPYSYDQEVAEAEATVAIVNEVQAGAEGPPAALGGGNLPPSSIRVTPWPVALPRPTAAAALGPPAPVQAKARRVTLDIDEEEEEEVEEILATEPPVAGSPGRLDSLPTTSPARPGLPVQEKEAEAKAGPEENLIPEAQATSRSVTQEGAAPLPKSGLAGLSPSLATDSSSEDALKSSSQPTLSTLPPDRAQVSPSPETPEEIPQRPQLLPRSRAEEDTDPNSVHSVPRGDPDGSTKDLVETCCAAGQQWAIDNDECQEIPENGAQSDVCRIAQRHCCISYLKEKSCVAGVMGAKEGETCGAEDNDTCGVSLYKQCCDCCGLGLRVRAEGQSCESNPNLGYPCSHVMLSCCEGEEPLIVPEVRRPPEPGATPRRVSETEMGSREALSLGTEAELPNSLPGDDQDECLMLPGELCQHLCINTVGSYRCACFPGFELQGDGRTCRPDGGAPQLDTARESAPRSESAQVSPNTIPLPVPQPNTCKDNGPCRQVCRVIGDTAMCSCFPGYAIMADGVSCEDINECVTDLHTCTRAEHCVNTPGSFQCYKALTCEPGYVLTDGECTDVDECVTGTHNCQAGFSCQNTKGSFYCQARQRCMDGFLQDPEGNCVDINECTSLLEPCRSGFSCINTVGSYTCQRNPLVCRRGYHANEEGSECVDVNECETGVHRCGEGQLCYNLPGSYRCDCKPGFQRDAFGRTCIDVNECWISPGRLCQHTCENTPGSYRCSCAAGFLLAADGKHCEDVNECETRRCSQECANIYGSYQCYCRQGYQLAEDGHTCTDIDECAQGAGILCTFRCVNVPGSYQCACPEQGYTMMANGRSCKDLDECALGTHNCSEAETCHNIQGSFRCLRFDCPPNYVRVSETKCERTTCQDISECQTSPARITHYQLNFQTGLLVPAHIFRIGPAPAFAGDTISLTITKGNEEGYFVTRRLNAYTGVVSLQRSVLEPRDFALDVEMKLWRQGSVTTFLAKMYIFFTTVAP", "length": 1175 }, "evidence": [ { "id": "F1SPG5", "url": "https://omabrowser.org/oma/group/F1SPG5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1A9U7-1", "protein_name": "Fibulin-2", "gene_name": "FBLN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDRHQSWQRSCLNAAFFMLLWSGVSHAQRDCTGVECQPLDNCIEDVLEPGECCATCLQHGCTCEGYQYYDCVNVGFVNGKVPEGQSYFVDFGSTECSCPKGGGKISCQFMLCPELPPNCIDAVVPADGCPQCGRIGCLHEGQKYVAGHTFHMPPCKVCHCPNAGGELMCYQLPNCNTFALNTVSPMDAEDNEPERHYDDPYSYDQEAPEGDNAQVESPKKYRSYSSHLEQESISQEQSEDYDYLPVSIAPSSSAVAGMYAEETTTPLTTPAPKLLSEFRSATERTEWKRVPSTTAPPPQQTTHKEAPVTTSAPLEHTTATTETPKQLGKPDRRPKGKQGDKERSEQERTPHSKMKKHTRKEDPGNSIHLDLKEVNLTEPSSAKSSQETHEGNAFPKVKFSATTSPPVALKEDRSQSSQKQSQTLYRYHPEEDGDPNSIHANPRLPEGSTKELIESCCGAGQQWAIDNGECTETPISGVDGDICRIAQKQCCISTVKENSCLAGMIAAKEGDACGPEESDTCGGSSYKQCCDCCNLGLRLRSEGKTCESNINLGYPCSHVMLSCCEGGDHFIHPEIKKHPEPSPTATPEKISETEDHNEALSISNEAELSNNLPGDDLDECLLYGGELCQHLCINTVGSYKCSCFPEFTLQEDGTSCSPDPDRGQVTRLEVEATIPPAASPQPLLIVSLQEEQDKCKDNGPCKHICSVMEGNVVCSCLSGYTIMADGISCEDINECVTDAHTCQRREHCVNTMGSFKCLQELSCQPGYELKDGECVDIDECERGTHSCKVNFVCQNTEGSFYCESKQRCMDGFLQDPEGNCVDINECTSLPEPCKPGFNCINTVGSYTCQRNMLTCSRGYHSNEDGTRCVDVDECQTGVHRCGEGQICHNLPGAYRCDCKMGYQYDAFSRSCIDINECWNYPGRLCQHTCENTPGSYHCTCSSGFHLSYDGKHCEDVNECDTSPCSQECANVYGSYQCYCRQGFQLAEDGHSCKDIDECTQSAGILCTFRCVNVPGSYQCACPEQGYTMAANGRTCRDIDECAIGTHNCSAAESCYNIQGSFRCLSFECPSNYRKVSDMRCERISCFNYLDCQNTPVRITYYQLNFQTNIMVPAHIFRIGPSPAYAGDNIILTINKGNEENYFSTRRLNSYTGIVYLQRQVKEPKDFLLDVEMKLWRQGTYTTFLAKIYIFITAHTY", "length": 1196 }, "evidence": [ { "id": "F1SPG5", "url": "https://omabrowser.org/oma/group/F1SPG5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BEB4-1", "protein_name": "Fibulin-2", "gene_name": "FBLN2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARLGEPMGAWLALALALALSPGGAAAPGQDCTGVECPPLENCIEDALEPGACCATCVQRGCACEGYQYYDCLQGGFVRGRVPAGQSYFVDFGSTECSCPPGGGKISCQFMPCPELPPNCIEAVVAADSCPQCGQVGCVHSGRKYAAGHTVRLAPCRACHCPDAGGELICYPLPDCHGDAAPGNTSDAEDGDPERHYEDPYSYDQEVAEAEALAGELQAGAGGPAALGGGGQPPSALQATLWPAALPRPTAAAALGPPAPVQAKARRVTDDGQEDREVPAVQEQLAAGGPRGLDGRPTAGPMPAHPVREEGAEARAGVEENLIPDVQATHRSAGPPPTFSMPNILLTETTQGPPEAPTEPSAHAALTTLQQETARAPPTQEVPQQPAGPRSRLEEEEDPNSVHSVPRAGLEVSTKDLIETCCAAGQQWAIDSDECLDIPESGAEGDACRTAQKQCCVSYLKEKSCMAGVLGAKEGEACGDEDSDTCGVSLYKQCCDCCGLGLRVRAEGQSCESNPNLGYPCNHVMLSCCEGEDPLIVPEVRRPPEPEAVPRRVSEAELASREALSLGTETELPNSLPGDDQDECLLLPGELCQHLCINTVGSYRCACFPGFSLQDDGRTCRPEGAPPKPEAAEESAQRPESAQVAPNTIALPVPQPNTCQDNGPCKQVCRVVGDTAMCSCFPGYAIMADGVSCEDQDECLLGTHDCNRRQFCVNTLGSFYCVNHTVLCAEGFILNMHRKCVDINECVTDLHTCSRREHCVNTVGSFHCYKALTCEPGYRLEDGECTDVDECELGTHNCQAGAVCHNTKGSFYCQARQRCLEGFLQDPEGNCVDINECTSLSEPCRPGFSCINTVGSYTCQRNPVICGRGYHASQDGTKCVDVNECETGVHRCGEGQVCHNLPGSYRCDCKPGFQRDAFGRTCIDVNECWTSPTRLCQHTCENTLGSYRCSCASGFLLAADGKHCEDVNECEAQRCSQECANIYGSYQCYCRQGYQLAEDGHTCTDIDECAQGASILCTFRCINVPGSYQCTCPERGYTMTANGRSCKDLDECALGTHNCSEAETCHNIQGGFRCLRFDCPPNYVRVSETKCERALCHDFLECQNAPARITHYRLNFQTGLLVPAHIFRISPVPAFAGDTIALTITKGNEEGYFGTRRLNAYTGVVFLQRTVREPRDFALDVEMKLWRQGSVTTFLAKMHIFFTAFAL", "length": 1207 }, "evidence": [ { "id": "F1SPG5", "url": "https://omabrowser.org/oma/group/F1SPG5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P37889-1", "protein_name": "Fibulin-2", "gene_name": "Fbln2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQESAGVWLALALVTALTPSPSMAVPWQDCTGAECPLLENCIEEALEPGACCATCVQQGCACEGYQYYDCVQGGFVDGRVPAGQSYFVDFGSTECSCPPGGGKISCQFMLCPELPPNCIEAVVVADSCPQCGQVGCVHSGRKYAAGHTVHLSSCRACHCPDAGGELICYQLPGCHGNFSDAEEGDSERQYEDPYSYDQEVAEAEATTAIVNEVQAGAEGPPAALGGGNLPPSSIRVTPWPVALPRPTAAAALGPPAPVQAKARRVTLDTEEDEEEEEEETLVTEPPTAGSPGRLDSLPTRSPARPGFPVQEKEAEAKAGPEENLIPDAQVTPRSVMQEGAAPLPRSGLAALSPSLATDSSSEDPVKPSDHPTLSTLPPDRAQVSPSPETPEEIPQHPQLLPRFRAEEDIDPNSVHSVPRGDLDGSTKDLIETCCAAGQQWAIDNDECQEIPENGAQSDICRIAQRQCCISYLKEKSCVAGVMGAKEGETCGAEDNDTCGVSLYKQCCDCCGLGLRVRAEGQSCESNPNLGYPCNHVMLSCCEGEEPLIVPEVRRPPEPEAAPRRVSEMEMASREALSLGTEAELPNSLPGDDQDECLMLPGELCQHLCINTVGSYRCACFPGFELQGDGRTCRPDRGAPQLDTARESAPRSESAQVSPNTIPLPVPQPNTCKDNGPCRQVCRVVGDTAMCSCFPGYAIMADGVSCEDQDECLMGTHDCSWKQFCVNTLGSFYCVNHTVLCAEGYILNAHRKCVDINECVTDLHTCTRAEHCVNTPGSFQCYKALTCEPGYVLTDGECTDVDECVTGTHNCQAGFSCQNTKGSFYCQARQRCMDGFLQDPEGNCVDINECTSLLEPCRSGFSCINTVGSYTCQRNPLVCGRGYHANEEGSECVDVNECETGVHRCGEGQLCYNLPGSYRCDCKPGFQRDAFGRTCIDVNECWVSPGRLCQHTCENTPGSYRCSCAAGFLLAADGKHCEDVNECETRRCSQECANIYGSYQCYCRQGYQLAEDGHTCTDIDECAQGAGILCTFRCVNVPGSYQCACPEQGYTMMANGRSCKDLDECALGTHNCSEAETCHNIQGSFRCLRFDCPPNYVRVSETKCERTTCQDITECQTSPARITHYQLNFQTGLLVPAHIFRIGPAPAFAGDTISLTITKGNEEGYFVTRRLNAYTGVVSLQRSVLEPRDFALDVEMKLWRQGSVTTFLAKMYIFFTTFAP", "length": 1221 }, "evidence": [ { "id": "F1SPG5", "url": "https://omabrowser.org/oma/group/F1SPG5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P98095-1", "protein_name": "Fibulin-2", "gene_name": "FBLN2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVLLWEPAGAWLALGLALALGPSVAAAAPRQDCTGVECPPLENCIEEALEPGACCATCVQQGCACEGYQYYDCLQGGFVRGRVPAGQSYFVDFGSTECSCPPGGGKISCQFMLCPELPPNCIEAVVVADSCPQCGQVGCVHAGHKYAAGHTVHLPPCRACHCPDAGGELICYQLPGCHGNFSDAEEGDPERHYEDPYSYDQEVAEVEAATALGGEVQAGAVQAGAGGPPAALGGGSQPLSTIQAPPWPAVLPRPTAAAALGPPAPVQAKARRVTEDSEEEEEEEEEREEMAVTEQLAAGGHRGLDGLPTTAPAGPSLPIQEERAEAGARAEAGARPEENLILDAQATSRSTGPEGVTHAPSLGKAALVPTQAVPGSPRDPVKPSPHNILSTSLPDAAWIPPTREVPRKPQVLPHSHVEEDTDPNSVHSIPRSSPEGSTKDLIETCCAAGQQWAIDNDECLEIPESGTEDNVCRTAQRHCCVSYLQEKSCMAGVLGAKEGETCGAEDNDSCGISLYKQCCDCCGLGLRVRAEGQSCESNPNLGYPCNHVMLSCCEGEEPLIVPEVRRPPEPAAAPRRVSEAEMAGREALSLGTEAELPNSLPGDDQDECLLLPGELCQHLCINTVGSYHCACFPGFSLQDDGRTCRPEGHPPQPEAPQEPALKSEFSQVASNTIPLPLPQPNTCKDNGPCKQVCSTVGGSAICSCFPGYAIMADGVSCEDINECVTDLHTCSRGEHCVNTLGSFHCYKALTCEPGYALKDGECEDVDECAMGTHTCQPGFLCQNTKGSFYCQARQRCMDGFLQDPEGNCVDINECTSLSEPCRPGFSCINTVGSYTCQRNPLICARGYHASDDGTKCVDVNECETGVHRCGEGQVCHNLPGSYRCDCKAGFQRDAFGRGCIDVNECWASPGRLCQHTCENTLGSYRCSCASGFLLAADGKRCEDVNECEAQRCSQECANIYGSYQCYCRQGYQLAEDGHTCTDIDECAQGAGILCTFRCLNVPGSYQCACPEQGYTMTANGRSCKDVDECALGTHNCSEAETCHNIQGSFRCLRFECPPNYVQVSKTKCERTTCHDFLECQNSPARITHYQLNFQTGLLVPAHIFRIGPAPAFTGDTIALNIIKGNEEGYFGTRRLNAYTGVVYLQRAVLEPRDFALDVEMKLWRQGSVTTFLAKMHIFFTTFAL", "length": 1184 }, "evidence": [ { "id": "F1SPG5", "url": "https://omabrowser.org/oma/group/F1SPG5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9V4B8-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "CT7856", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFYKLCAFMCFLIVGGHVTTTMASDSISGYIRKCCINGLRHARTTASCKKIDIAPTIIPQLWLGLCHSTLEVCCSRELDHQDCELGRLAALDGTRCDGEGNVTSSSYATCCRSCQIGLAVKASKANCKDPLFSFIFLIESYRACCYGSADFKDQPGIDEIDKANSITDEGELPFVSEEDMNVTIVLTGDDDICGKIENLCAHICENTFDAYQCKCHPGFMLDNNNVTCSPMKTQICPSGYNLDKLDNKCIDIDECREDLHDCKSSQYCHNTNGGYHCLNVKEKECPPGFHYDHDYDACKDDYKCKDRKCVKIQSCDKGFSLHNGTCSDIDECSHKSLNNCHVNSNQECVNTVGSYSCNCLPGFNLDATLNKCVDINECSINNHNCLPTQRCDNTIGSYICTRLQSCGTGYTLNAETGNCDDDDECTLSTHNCPSNYDCHNTRGSFRCYRKISTMLTTRTTSTTVPPLSLENARRSFTSRYPYPLAVHPEYSQNNDSISTNRRVDCSPGFYRNTLGACIDTNECMEQNPCGNHERCINTNGHFRCESLLQCSPGYKSTVDGKSCIDIDECDTGEHNCGERQICRNRNGGFVCSCPIGHELKRSIGGASTCVDTNECALEQRVCPLNAQCFNTIGAYYCECKAGFQKKSDGNNSTQCFDIDECQVIPGLCQQKCLNFWGGYRCTCNSGYQLGPDNRTCNDINECEVHKDYKLCMGLCINTPGSYQCSCPRGYILAADMNTCRDVDECATDSINQVCTGRNDICTNIRGSYKCTTVNCPLGYSIDPEQKNRCRQNLNFCEGEECYTQPSAFTYNFITFVSKLMIPPDGRTIFTLRGPLWYDNIEFDLKIVRIQATTNIQKATDGSFDTLQNNNQVNVILKKSLEGPQDIELELSMTVYTNGMPRGKSVAKLFLFVSQHTF", "length": 917 }, "evidence": [ { "id": "F1SPG5", "url": "https://omabrowser.org/oma/group/F1SPG5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SPG5", "url": "https://www.uniprot.org/uniprotkb/F1SPG5" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SPG5", "url": "https://www.uniprot.org/uniprotkb/F1SPG5" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SPG5", "url": "https://www.uniprot.org/uniprotkb/F1SPG5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SPG5", "url": "https://www.uniprot.org/uniprotkb/F1SPG5" } ], "pmid": "" }, { "name": "extracellular matrix binding", "id": "GO:0050840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050840", "evidence": [ { "database": "UniProtKB", "id": "F1SPG5", "url": "https://www.uniprot.org/uniprotkb/F1SPG5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1072, "end_pos": 1074, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 497, "end_pos": 499, "annotation": "n_glycosylation_sequon" }, { "start_pos": 737, "end_pos": 739, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPG5" }, { "id": "PS01178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Anaphylatoxin-like", "eco_id": "ECO_0000259", "start_pos": 435, "end_pos": 470, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPG5" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 594, "end_pos": 635, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 339, 356 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1072, "end_pos": 1074 }, { "start_pos": 191, "end_pos": 193 }, { "start_pos": 497, "end_pos": 499 }, { "start_pos": 737, "end_pos": 739 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM74-1", "uniprot_ac": "F1SM74", "uniprot_id": "F1SM74_PIG", "mass": { "chemical_mass": 47281.0, "monoisotopic_mass": 47281.0 }, "refseq": { "ac": "XP_020947032", "name": "mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947032" }, "gene_names": [ { "name": "TRMU", "type": "recommended", "evidence": [ { "id": "F1SM74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM74" } ] }, { "name": "TRMU", "type": "synonym", "evidence": [ { "id": "XP_020947032", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947032" } ] } ], "protein_names": [ { "name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "type": "recommended", "evidence": [ { "id": "F1SM74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM74/entry#names_and_taxonomy" } ] }, { "name": "2.8.1.14", "type": "synonym", "evidence": [ { "id": "F1SM74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM74/entry#names_and_taxonomy" } ] }, { "name": "mitochondrial tRNA-specific 2-thiouridylase 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020947032", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947032" } ] } ], "function": [ { "annotation": "Catalyzes the 2-thiolation of uridine at the wobble position (U34) of mitochondrial tRNA(Lys), tRNA(Glu) and tRNA(Gln). Required for the formation of 5-taurinomethyl-2-thiouridine (tm5s2U) of mitochondrial tRNA(Lys), tRNA(Glu), and tRNA(Gln) at the wobble position. ATP is required to activate the C2 atom of the wobble base.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B727", "url": "https://www.uniprot.org/uniprotkb/A0A287B727#function" }, { "database": "UniProtKB", "id": "ARBA00003986", "url": "https://www.uniprot.org/uniprotkb/ARBA00003986#function" }, { "database": "UniProtKB", "id": "F1SM74", "url": "https://www.uniprot.org/uniprotkb/F1SM74#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM74", "url": "https://www.uniprot.org/uniprotkb/F1SM74" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRMU", "url": "https://www.uniprot.org/uniprotkb/F1SM74", "locus": { "chromosome": "5", "start_pos": 3208118, "end_pos": 3224366, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000007", "url": "https://www.ensembl.org/id/ENSSSCG00000000007" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000007", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000007", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01998", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01998", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521087", "url": "https://www.ncbi.nlm.nih.gov/gene/100521087", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004506", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004506", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023382", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023382", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521087", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521087", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PFYVWDL", "url": "https://omabrowser.org/oma/group/PFYVWDL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SM74", "url": "https://www.orthodb.org/?gene=F1SM74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11933", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11933", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11933:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11933:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03054", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03054", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20258", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20259", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20259", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020947032", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947032", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "47040", "url": "https://www.rhea-db.org/rhea/47040", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B727", "url": "https://www.uniprot.org/uniprotkb/A0A287B727", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B727-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B727-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM74", "url": "https://www.uniprot.org/uniprotkb/F1SM74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM74-1", "url": "https://www.uniprot.org/uniprotkb/F1SM74-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQAARHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDLLDERGVCAADKDCEDAYRVCQILDLPFRQVSYVKEYWHDVFSDFLNEYEKGRTPNPDIICNKHIKFSCFFNYAVDNLGADAVATGHYARTSQEDEEVFRQKHIRRPEGLFRNRFEVRSAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKAFVKKIAAENRLHHVLQKKESMGICFVGKRNFEDFILQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPWYVVEKDSASGDVLVAPRTDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMACHFRFRHQMALVPCVLTLNQDGTVWVTAVEAVRALALGQFAVFYKGDECLGSGKILRLGPSAYTLQKGRSKSRAATEGSSAGQGGSPGPGPTL", "length": 421, "header": "tr|F1SM74-1|F1SM74_PIG Isoform 1 of Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Sus scrofa OX=9823 GN=TRMU PE=3 SV=2 CANONICAL=F1SM74-1" }, "isoforms": [ { "isoform_ac": "A0A287B727-1", "url": "https://www.uniprot.org/uniprotkb/F1SM74/entry#A0A287B727-1", "sequence": { "sequence": "MQAARHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDLLDERGVCAADKDCEDAYRVCQILDLPFRQVSYVKEYWHDVFSDFLNEYEKGRTPNPDIICNKHIKFSCFFNYAVDNLGADAVATGHYARTSQEDEEVFRQKHIRRPEGLFRNRFEVRSAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKAFVKKIAAENRLHHVLQKKESMGICFVGKRNFEDFILQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPWYVVEKDSASGDVLVAPRTDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMACHFRFRHQMALVRCVLQRGRVPGQREDPPPGAVRLHAPEGQEQVQSGHR", "length": 377, "header": "tr|A0A287B727-1|F1SM74_PIG Computationally mapped isoform of Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Sus scrofa OX=9823 GN=TRMU PE=3 SV=2 CANONICAL=F1SM74-1" }, "locus": { "chromosome": "5", "start_pos": 3224313, "end_pos": 3208479, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057594.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057594.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051915.2", "url": "https://www.ensembl.org/id/ENSSSCP00000051915.2" } ] } }, { "isoform_ac": "F1SM74-1", "url": "https://www.uniprot.org/uniprotkb/F1SM74/entry#F1SM74-1", "sequence": { "sequence": "MQAARHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDLLDERGVCAADKDCEDAYRVCQILDLPFRQVSYVKEYWHDVFSDFLNEYEKGRTPNPDIICNKHIKFSCFFNYAVDNLGADAVATGHYARTSQEDEEVFRQKHIRRPEGLFRNRFEVRSAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKAFVKKIAAENRLHHVLQKKESMGICFVGKRNFEDFILQYLQPRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIGGLREPWYVVEKDSASGDVLVAPRTDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMACHFRFRHQMALVPCVLTLNQDGTVWVTAVEAVRALALGQFAVFYKGDECLGSGKILRLGPSAYTLQKGRSKSRAATEGSSAGQGGSPGPGPTL", "length": 421, "header": "tr|F1SM74-1|F1SM74_PIG Isoform 1 of Mitochondrial tRNA-specific 2-thiouridylase 1 OS=Sus scrofa OX=9823 GN=TRMU PE=3 SV=2 CANONICAL=F1SM74-1" }, "locus": { "chromosome": "5", "start_pos": 3224313, "end_pos": 3208430, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000008.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000008.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000008.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000008.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B727", "url": "https://www.uniprot.org/uniprotkb/A0A287B727" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521087", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521087", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MBS8-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "TRMU", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQVARHVVCAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADRDCEDAYRVCRILDIPFRQVSYAKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFRCFFNYAVDNLGADAVATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVPQEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEYLQPRPGRFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVDKDGAKGDVLVAPRTDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRALAPGQFAVFYKGDECLGSGKILRLGPSAYTLQKGQRTSSVAKEGPSDSPGLGPAP", "length": 417 }, "evidence": [ { "id": "F1SM74", "url": "https://omabrowser.org/oma/group/F1SM74/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B1WC37-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "Trmu", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEQGICAADKDCEDAYKVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADAVATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQVSVSDVSGGLLWAGAPVVMKPVFQYLQPRPGKFISIEDNRVLGTHKGWFLYTLGQRAKISGLSEPWYVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRGLALGQFAVFYKGEECLGSGKILRLGPSAYTLQKGKNRTRVAPEVSSDSPGLHPTS", "length": 441 }, "evidence": [ { "id": "F1SM74", "url": "https://omabrowser.org/oma/group/F1SM74/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F4I824-1", "protein_name": "tRNA-5-taurinomethyluridine 2-sulfurtransferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFSAVAKPFLSPSPPLFRLPLSSISISFRVFPSFFSSSSSSQLPSPQSSNPITPLISSNRNYSRHAFIVDQYLSCSMPEKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAESGDFLGNHRGFWFYTIGQRQGLRLPGGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNSGKPSGKVRELRCKVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEGTTCIGSGVILESWDDQCFPVCAKALQLAALEDKTKLGKPVKIMTMPTMSSVEADTGEASAEQKLVNA", "length": 497 }, "evidence": [ { "id": "F1SM74", "url": "https://omabrowser.org/oma/group/F1SM74/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O75648-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "TRMU", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEHGVCTADKDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIEDNKVLGTHKGWFLYTLGQRANIGGLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYKGDECLGSGKILRLGPSAYTLQKGQRRAGMATESPSDSPEDGPGLSPLL", "length": 421 }, "evidence": [ { "id": "F1SM74", "url": "https://omabrowser.org/oma/group/F1SM74/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q12093-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "SLM3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLARYLNLIGRRSASPYRPQRLPAKFDNVIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAKHLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGNYWLVTGHYARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKPEVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLPSSPGDIITVDPQSGAKTTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDTMRIENFSSLGPREDTINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASKQRAITPGQSCCLYIDDRVLGSGPISHVNNNDTHA", "length": 417 }, "evidence": [ { "id": "F1SM74", "url": "https://omabrowser.org/oma/group/F1SM74/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5ZKW0-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "TRMU", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLAAGRRVACAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDPLDEQGACSVDRDCEDAYRVCQKLDIPFHQVSYVKEYWNEVFSDLLKEYELGRTPNPDIVCNKHIKFNHFLHYAMDNLGADAIATGHYARTSLEDEEVFQQKHTKRPRELFRNRFEVRNTVKLLQGADLFKDQTFFLSQISQDALRKTIFPLGDLTKSFVRKIASEHGLHHVLKKKEACTTFPFQSMGVCFIGERNFEKFLLEYLEPQPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGLQGAWFVVDKDVSTGDIFVAPSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLNQDGSVWVTLVKPARALTPGQFAVFYKGDECLGSGKILRLGPSVFTMQQGRNREEGTKKEDIDKVEPAT", "length": 424 }, "evidence": [ { "id": "F1SM74", "url": "https://omabrowser.org/oma/group/F1SM74/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9DAT5-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "Trmu", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEQGVCAADKDCEDAYKVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDINCNKHIKFSCFYHYAVDNLGADAVATGHYARTSLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGELTKDFVKKIAAENSLHHVLQKRESMGICFIGKRNLEHFLLQYLQPRPGKFVSIEDNTVLGTHKGWFLYTLGQRAKISGLREPWYVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRGLALGQFAVFYKGEECLGSGKILRLGPSAYTLQKGKNRTRVAPEASSDSPGLHPTS", "length": 417 }, "evidence": [ { "id": "F1SM74", "url": "https://omabrowser.org/oma/group/F1SM74/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W5B6-1", "protein_name": "Mitochondrial tRNA-specific 2-thiouridylase 1", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MIRNVVVGVSGGVDSAVSAHLLAEQGFKVLGVFMRNWDEADEVGRCSGEADLKDAEWACRQLGVELRQVNYVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNSLGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAKKIGFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDIDSGAVVGHHEGIHQWTVGQRCRLSSFLQPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQILSDTGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDDTACLGSARILSANPLKKKNAQTQQAQAANLVS", "length": 389 }, "evidence": [ { "id": "F1SM74", "url": "https://omabrowser.org/oma/group/F1SM74/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SM74", "url": "https://www.uniprot.org/uniprotkb/F1SM74" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "F1SM74", "url": "https://www.uniprot.org/uniprotkb/F1SM74" } ], "pmid": "" }, { "name": "tRNA-5-taurinomethyluridine 2-sulfurtransferase", "id": "GO:0061708", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061708", "evidence": [ { "database": "UniProtKB", "id": "F1SM74", "url": "https://www.uniprot.org/uniprotkb/F1SM74" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SM74", "url": "https://www.uniprot.org/uniprotkb/F1SM74" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "tRNA processing", "id": "GO:0008033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008033", "evidence": [ { "database": "UniProtKB", "id": "F1SM74", "url": "https://www.uniprot.org/uniprotkb/F1SM74" } ], "pmid": "" }, { "name": "tRNA wobble position uridine thiolation", "id": "GO:0002143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002143", "evidence": [ { "database": "UniProtKB", "id": "F1SM74", "url": "https://www.uniprot.org/uniprotkb/F1SM74" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "47040", "name": "", "equation": "5-taurinomethyluridine(34) in tRNA + S-sulfanyl-L-cysteinyl-[protein] + AH2 + ATP = 5-taurinomethyl-2-thiouridine(34) in tRNA + L-cysteinyl-[protein] + A + AMP + diphosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47040", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47040" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SM74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM74" }, { "id": "PF20258", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20258" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "tRNA-specific 2-thiouridylase MnmA-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 303, "end_pos": 383, "start_aa": "Asp", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SM74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM74" }, { "id": "PF20259", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "tRNA-specific 2-thiouridylase MnmA-like central", "eco_id": "ECO_0000259", "start_pos": 230, "end_pos": 292, "start_aa": "Glu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIH4-1", "uniprot_ac": "F1SIH4", "uniprot_id": "F1SIH4_PIG", "mass": { "chemical_mass": 122268.0, "monoisotopic_mass": 122268.0 }, "refseq": {}, "gene_names": [ { "name": "PIGO", "type": "recommended", "evidence": [ { "id": "F1SIH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIH4" } ] } ], "protein_names": [ { "name": "GPI ethanolamine phosphate transferase 3, catalytic subunit", "type": "recommended", "evidence": [ { "id": "F1SIH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIH4/entry#names_and_taxonomy" } ] }, { "name": "Phosphatidylinositol-glycan biosynthesis class O protein", "type": "synonym", "evidence": [ { "id": "F1SIH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIH4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalytic subunit of the ethanolamine phosphate transferase 3 complex that transfers an ethanolamine phosphate (EtNP) from a phosphatidylethanolamine (PE) to the 6-OH position of the third alpha-1,2-linked mannose of the a 2-acyl-6-[alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-(1->6)-2-phosphoethanolamine-alpha-D-mannosyl-(1->4)-alpha-D-glucosaminyl]-1-(1-radyl,2-acyl-sn-glycero-3-phospho)-1D-myo-inositol (also termed H6) intermediate to generate a a 2-acyl-6-[6-phosphoethanolamine-alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-(1->6)-2-phosphoethanolamine-alpha-D-mannosyl-(1->4)-alpha-D-glucosaminyl]-1-(1-radyl,2-acyl-sn-glycero-3-phospho)-1D-myo-inositol (also termed H7) and participates in the tenth step of the glycosylphosphatidylinositol-anchor biosynthesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BBY4", "url": "https://www.uniprot.org/uniprotkb/A0A287BBY4#function" }, { "database": "UniProtKB", "id": "ARBA00094126", "url": "https://www.uniprot.org/uniprotkb/ARBA00094126#function" }, { "database": "UniProtKB", "id": "F1SIH4", "url": "https://www.uniprot.org/uniprotkb/F1SIH4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIH4", "url": "https://www.uniprot.org/uniprotkb/F1SIH4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PIGO", "url": "https://www.uniprot.org/uniprotkb/F1SIH4", "locus": { "chromosome": "1", "start_pos": 235878355, "end_pos": 235887993, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005303", "url": "https://www.ensembl.org/id/ENSSSCG00000005303" } ] } } ], "crossref": [ { "id": "F1SIH4", "url": "https://alphafold.ebi.ac.uk/entry/F1SIH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005303", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005303", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16023", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16023", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017850", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017850", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039524", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039524", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23071", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23071", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23071:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23071:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01663", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01663", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "61012", "url": "https://www.rhea-db.org/rhea/61012", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BBY4", "url": "https://www.uniprot.org/uniprotkb/A0A287BBY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBY4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIH4", "url": "https://www.uniprot.org/uniprotkb/F1SIH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIH4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQKISVLLFLAWVSFLFYAGIALFTSGFLLTRLELNNHSSCQEPPGPVFLPWGSQGEPGACWMASRFPRLVLVVIDALRFDFAKPQFSHVSGEPPVSLPFLGKLSSLQRILESQPHHARLYQSKVDPPTTTMQRIKALTTGSLPTFVDAGSNFASYAIAEDNLIKQLTSTGRRVVFMGDETWNDLFPGAFSQAFFFPSFDVRDLHTVDSGILERLYPTMDSGEWDVLIIHFLGVDHCGHKHGPHHPEMAKKLSQMDQVIQGLVEHLENDTLLVVTGDHGMTTNGNHGGDSELENSAALFLYSPTALFPSAPPEEPEVIPQISLVPTLALLLGLPIPFGNIGEVIAEVFSEVEDSQPHFSALAQASALHLNAQQVSRFLHTYSAVAQDLQIKELHRLQNLFSKASADYQQLLQSPQGAEAALQTVITELQQFLRGVRAMCIESWARFSLVRMAGGAALLAATCFLCLLVSQWAASPGFSFHPLSIPMAWGLIGAIVCAGFLAATGLKLDLVVLGAMAAVGSLLPCLWKVWIGWGSKRPLAALLPMPEPVLLLLLIRFAGFFSDSFVIAEARAAPFLLVSLILLLVAQLHWEGKLLPPKLVTVPRFGFLTPTGPPRHNGLHTLGLGGGLLLCIRLAGLFHRCPEETPACSSSPWLSPLASMVGGRAKNLWYGACVGALVALLAAVRLWLRRYGNLKSPEPPVLFVRWGLPLMVLGTAAYWALASGADEAPPRLRALVAGASVMLPRAVAGLAASGLMLLLWRPVTVLVKASTGAPRTRTILTPFSGPPTSQADLDYVVPQIYRHMQEEFRGRLERTKSQGPLTVAAYQLGSVYSAAVVTALTFLAFPLLLLHAERISLVFLLLFLQSFLLLHLLAAGIPITTPGPFTVPWQAVSAWAFMATQTFYSTGHQPVFPAIHWHAAFVGVSEGPGFTWLSALLVGSNTFASHLLFAVGCPLLLLWPFLCESQGPRKRRQPPGNEAEATVRPEEEEEPLMEMRLRDAPHHFNAALLQLGLKYLFVLGIQILASALAASILRRHLMVWKVFAPKFIFEAMGFIVSSVGLCLGIALVMRVDGAVSSWFRQLVLSHQRAGEQSSLVYTGAGSSAREAQSYLLPSCSQELLRPLT", "length": 1123, "header": "tr|F1SIH4-1|F1SIH4_PIG Isoform 1 of GPI ethanolamine phosphate transferase 3, catalytic subunit OS=Sus scrofa OX=9823 GN=PIGO PE=3 SV=4 CANONICAL=F1SIH4-1" }, "isoforms": [ { "isoform_ac": "A0A287BBY4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIH4/entry#A0A287BBY4-1", "sequence": { "sequence": "MQKISVLLFLAWVSFLFYAGIALFTSGFLLTRLELNNHSSCQEPPGPVFLPWGSQGEPGACWMASRFPRLVLVVIDALRFDFAKPQFSHVSGEPPVSLPFLGKLSSLQRILESQPHHARLYQSKVDPPTTTMQRIKALTTGSLPTFVDAGSNFASYAIAEDNLIKQLTSTGRRVVFMGDETWNDLFPGAFSQAFFFPSFDVRDLHTVDSGILERLYPTMDSGEWDVLIIHFLGVDHCGHKHGPHHPEMAKKLSQMDQVIQGLVEHLENDTLLVVTGDHGMTTNGNHGGDSELENSAALFLYSPTALFPSAPPEEPEVIPQISLVPTLALLLGLPIPFGNIGEVIAEVFSEVEDSQPHFSALAQASALHLNAQQVSRFLHTYSAVAQDLQIKELHRLQNLFSKASADYQQLLQSPQGAEAALQTVITELQQFLRGVRAMCIESWARFSLSFLLLHLLAAGIPITTPGPFTVPWQAVSAWAFMATQTFYSTGHQPVFPAIHWHAAFVGVSEGPGFTWLSALLVGSNTFASHLLFAVGCPLLLLWPFLCESQGPRKRRQPPGNEAEATVRPEEEEEPLMEMRLRDAPHHFNAALLQLGLKYLFVLGIQILASALAASILRRHLMVWKVFAPKFIFEAMGFIVSSVGLCLGIALVMRVDGAVSSWFRQLVLSHQRAGEQSSLVYTGAGSSAREAQSYLLPSCSQELLVSGTSSFCNSKS", "length": 715, "header": "tr|A0A287BBY4-1|F1SIH4_PIG Computationally mapped isoform of GPI ethanolamine phosphate transferase 3, catalytic subunit OS=Sus scrofa OX=9823 GN=PIGO PE=3 SV=2 CANONICAL=F1SIH4-1" }, "locus": { "chromosome": "1", "start_pos": 235887185, "end_pos": 235880178, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055859.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055859.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054036.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054036.3" } ] } }, { "isoform_ac": "F1SIH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIH4/entry#F1SIH4-1", "sequence": { "sequence": "MQKISVLLFLAWVSFLFYAGIALFTSGFLLTRLELNNHSSCQEPPGPVFLPWGSQGEPGACWMASRFPRLVLVVIDALRFDFAKPQFSHVSGEPPVSLPFLGKLSSLQRILESQPHHARLYQSKVDPPTTTMQRIKALTTGSLPTFVDAGSNFASYAIAEDNLIKQLTSTGRRVVFMGDETWNDLFPGAFSQAFFFPSFDVRDLHTVDSGILERLYPTMDSGEWDVLIIHFLGVDHCGHKHGPHHPEMAKKLSQMDQVIQGLVEHLENDTLLVVTGDHGMTTNGNHGGDSELENSAALFLYSPTALFPSAPPEEPEVIPQISLVPTLALLLGLPIPFGNIGEVIAEVFSEVEDSQPHFSALAQASALHLNAQQVSRFLHTYSAVAQDLQIKELHRLQNLFSKASADYQQLLQSPQGAEAALQTVITELQQFLRGVRAMCIESWARFSLVRMAGGAALLAATCFLCLLVSQWAASPGFSFHPLSIPMAWGLIGAIVCAGFLAATGLKLDLVVLGAMAAVGSLLPCLWKVWIGWGSKRPLAALLPMPEPVLLLLLIRFAGFFSDSFVIAEARAAPFLLVSLILLLVAQLHWEGKLLPPKLVTVPRFGFLTPTGPPRHNGLHTLGLGGGLLLCIRLAGLFHRCPEETPACSSSPWLSPLASMVGGRAKNLWYGACVGALVALLAAVRLWLRRYGNLKSPEPPVLFVRWGLPLMVLGTAAYWALASGADEAPPRLRALVAGASVMLPRAVAGLAASGLMLLLWRPVTVLVKASTGAPRTRTILTPFSGPPTSQADLDYVVPQIYRHMQEEFRGRLERTKSQGPLTVAAYQLGSVYSAAVVTALTFLAFPLLLLHAERISLVFLLLFLQSFLLLHLLAAGIPITTPGPFTVPWQAVSAWAFMATQTFYSTGHQPVFPAIHWHAAFVGVSEGPGFTWLSALLVGSNTFASHLLFAVGCPLLLLWPFLCESQGPRKRRQPPGNEAEATVRPEEEEEPLMEMRLRDAPHHFNAALLQLGLKYLFVLGIQILASALAASILRRHLMVWKVFAPKFIFEAMGFIVSSVGLCLGIALVMRVDGAVSSWFRQLVLSHQRAGEQSSLVYTGAGSSAREAQSYLLPSCSQELLRPLT", "length": 1123, "header": "tr|F1SIH4-1|F1SIH4_PIG Isoform 1 of GPI ethanolamine phosphate transferase 3, catalytic subunit OS=Sus scrofa OX=9823 GN=PIGO PE=3 SV=4 CANONICAL=F1SIH4-1" }, "locus": { "chromosome": "1", "start_pos": 235887185, "end_pos": 235879359, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005841.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005841.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005696.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005696.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BBY4", "url": "https://www.uniprot.org/uniprotkb/A0A287BBY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mannose-ethanolamine phosphotransferase activity", "id": "GO:0051377", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051377", "evidence": [ { "database": "UniProtKB", "id": "F1SIH4", "url": "https://www.uniprot.org/uniprotkb/F1SIH4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SIH4", "url": "https://www.uniprot.org/uniprotkb/F1SIH4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "GPI anchor biosynthetic process", "id": "GO:0006506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006506", "evidence": [ { "database": "UniProtKB", "id": "F1SIH4", "url": "https://www.uniprot.org/uniprotkb/F1SIH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 268, "end_pos": 270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "61012", "name": "", "equation": "a 2-acyl-6-[alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-(1->6)-2-phosphoethanolamine-alpha-D-mannosyl-(1->4)-alpha-D-glucosaminyl]-1-(1-radyl,2-acyl-sn-glycero-3-phospho)-1D-myo-inositol + a 1,2-diacyl-sn-glycero-3-phosphoethanolamine = a 2-acyl-6-[6-phosphoethanolamine-alpha-D-mannosyl-(1->2)-alpha-D-mannosyl-(1->6)-2-phosphoethanolamine-alpha-D-mannosyl-(1->4)-alpha-D-glucosaminyl]-1-(1-radyl,2-acyl-sn-glycero-3-phospho)-1D-myo-inositol + a 1,2-diacyl-sn-glycerol", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "61012", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/61012" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIH4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1123, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIH4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIH4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 268, "end_pos": 270 }, { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG35-1", "uniprot_ac": "F1SG35", "uniprot_id": "F1SG35_PIG", "mass": { "chemical_mass": 84829.0, "monoisotopic_mass": 84829.0 }, "refseq": {}, "gene_names": [ { "name": "POFUT2", "type": "recommended", "evidence": [ { "id": "F1SG35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG35" } ] } ], "protein_names": [ { "name": "GDP-fucose protein O-fucosyltransferase 2", "type": "recommended", "evidence": [ { "id": "F1SG35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG35/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.221", "type": "synonym", "evidence": [ { "id": "F1SG35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG35/entry#names_and_taxonomy" } ] }, { "name": "Peptide-O-fucosyltransferase 2", "type": "synonym", "evidence": [ { "id": "F1SG35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG35/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG35", "url": "https://www.uniprot.org/uniprotkb/F1SG35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POFUT2", "url": "https://www.uniprot.org/uniprotkb/F1SG35", "locus": {} } ], "crossref": [ { "id": "F1SG35", "url": "https://alphafold.ebi.ac.uk/entry/F1SG35", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012088", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012088", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11298", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11298", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR019378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13398", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13398", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13398:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13398:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10250", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10250", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5173214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "63644", "url": "https://www.rhea-db.org/rhea/63644", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "70491", "url": "https://www.rhea-db.org/rhea/70491", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BD23", "url": "https://www.uniprot.org/uniprotkb/A0A287BD23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BD23-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BD23-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAY2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAY2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAY2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG35", "url": "https://www.uniprot.org/uniprotkb/F1SG35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG35-1", "url": "https://www.uniprot.org/uniprotkb/F1SG35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALSVVCLLLGAASWPPVAASGEEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVYIRVASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWADFFDLPSLNRNIPVIEYEQFIAESGGPFIDQVYVLQGYAEGWKEGAWEEKVDSRPCIEPPLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPVLLRNTSARSVMLDRAETLLHDHYGGKEYWDTRRSMVFARHLRAAGDAFRSSRLNSTDAADRTPSTEDWTERKVQLGSSLGGPYLGVHLRRKDFIWGHRQDVPSLDGAVRRIRSLMEAHHWRSSRGCCRRCCASSPRGRSWSSTRTAAWPSSTSGSARTPGFSSAPPSPRSPSESRRRERSWAWTPRPRTTGSVGTRRRRASSPRTGRSRTERLPRACVILGCVHPGRGLGGCRPLGLRPGAAPCVPHAVVAVTRHRHIPGIRAVFASGPGTAPAQPAGPRDTTEVPACPSRPWPGGLSSSGARAAPILGAGGHGAAPARMGRAVLSPPVAAPEQSPECCRPCAGARAAFTAGGAGRGLWGPVTPCAPPTSTHTHPHPTSQSTRTFLAGVVCVLTRAAPSWLLAGSPWCLACDGRSSSSSTGSGRVLVLEALLPLGRGGAERRAVAPASVASQHGHHQGTAWGPRQAPLTLRPQFPPHLVIGENPSSAWSLQSPQVQGPQSTSPSCVSSRGGPVLGLARGVTGVQGEGPGVYSSPVCTPNADKVSFLEMSSYRVSSRQSQAGRLVWPSPFLSKAAALSSSVALWA", "length": 789, "header": "tr|F1SG35-1|F1SG35_PIG Isoform 1 of GDP-fucose protein O-fucosyltransferase 2 OS=Sus scrofa OX=9823 GN=POFUT2 PE=1 SV=5 CANONICAL=F1SG35-1" }, "isoforms": [ { "isoform_ac": "A0A287BD23-1", "url": "https://www.uniprot.org/uniprotkb/F1SG35/entry#A0A287BD23-1", "sequence": { "sequence": "MAALSVVCLLLGAASWPPVAASGEEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVYIRVASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWADFFDLPSLNRNIPVIEYEQFIAESGGPFIDQVYVLQGYAEGWKEGAWEEKVDSRPCIEPPLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPVLLRNTSARSVMLDRAETLLHDHYGGKEYWDTRRSMVFARHLRAAGDAFRSSRLNSTDAADRTPSTEDWTERKVQLGSSLGGPYLGVHLRRKDFIWGHRQDVPSLDGAVRRIRSLMEAHQLSKVFVATDAVRKELEELKRLLPEMLRFEPTWEELELYKDGGVAIIDQWICAHARRRERSWAWTPRPRTTGSVGTRRRRASSPRTGRSRTERLPRACVILGCVHPGRGLGGCRPLGLRPGAAPCVPHAVVAVTRHRHIPGIRAVFASGPGTAPAQPAGPRDTTEVPACPSRPWPGGLSSSGARAAPILGAGGHGAAPARMGRAVLSPPVAAPEQSPECCRPCAGARAAFTAGGAGRGLWGPVTPCAPPTSTHTHPHPTSQSTRTFLAGVVCVLTRAAPSWLLAGSPWCLACDGRSSSSLSGISARPPPGHCLGPPPGPSDPAPPIPTTPGDWREPELSLEPAEPSSPGPPEHEPFLCLLPRWPRARAGPWCHRCAGRRTRCLFFPCLYTER", "length": 715, "header": "tr|A0A287BD23-1|F1SG35_PIG Computationally mapped isoform of GDP-fucose protein O-fucosyltransferase 2 OS=Sus scrofa OX=9823 GN=POFUT2 PE=1 SV=2 CANONICAL=F1SG35-1" }, "locus": { "chromosome": "13", "start_pos": 207818088, "end_pos": 207805077, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043344.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043344.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053992.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053992.2" } ] } }, { "isoform_ac": "A0A5G2RAY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SG35/entry#A0A5G2RAY2-1", "sequence": { "sequence": "MAALSVVCLLLGAASWPPVAASGEEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVYIRVASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWADFFDLPSLNRNIPVIEYEQFIAGEAVSHLGPEGLASGGPAGAPLRSPRRQCSRSFRGWFWGYEETRGLNVSCLSVQGSASIVAPVLLRNTSARSVMLDRAETLLHDHYGGKEYWDTRRSMVFARHLRAAGDAFRSSRLNSTDAADRTPSTEDWTERKVQLGSSLGGPYLGVHLRRKDFIWGHRQDVPSLDGAVRRIRSLMEAHQLSKVFVATDAVRKELEELKRLLPEMLRFEPTWEELELYKDGGVAIIDQWICAHARFFIGTSVSTFSFRIQEEREILGLDPTTTYNRFCGDEEKACEQPTHWKIAY", "length": 414, "header": "tr|A0A5G2RAY2-1|F1SG35_PIG Computationally mapped isoform of GDP-fucose protein O-fucosyltransferase 2 OS=Sus scrofa OX=9823 GN=POFUT2 PE=1 SV=1 CANONICAL=F1SG35-1" }, "locus": { "chromosome": "13", "start_pos": 207818088, "end_pos": 207806067, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082740.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082740.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074162.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074162.1" } ] } }, { "isoform_ac": "F1SG35-1", "url": "https://www.uniprot.org/uniprotkb/F1SG35/entry#F1SG35-1", "sequence": { "sequence": "MAALSVVCLLLGAASWPPVAASGEEFWPGQSAADILSGAASRRRYLLYDVNPPEGFNLRRDVYIRVASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWADFFDLPSLNRNIPVIEYEQFIAESGGPFIDQVYVLQGYAEGWKEGAWEEKVDSRPCIEPPLYSQDKHEYYRGWFWGYEETRGLNVSCLSVQGSASIVAPVLLRNTSARSVMLDRAETLLHDHYGGKEYWDTRRSMVFARHLRAAGDAFRSSRLNSTDAADRTPSTEDWTERKVQLGSSLGGPYLGVHLRRKDFIWGHRQDVPSLDGAVRRIRSLMEAHHWRSSRGCCRRCCASSPRGRSWSSTRTAAWPSSTSGSARTPGFSSAPPSPRSPSESRRRERSWAWTPRPRTTGSVGTRRRRASSPRTGRSRTERLPRACVILGCVHPGRGLGGCRPLGLRPGAAPCVPHAVVAVTRHRHIPGIRAVFASGPGTAPAQPAGPRDTTEVPACPSRPWPGGLSSSGARAAPILGAGGHGAAPARMGRAVLSPPVAAPEQSPECCRPCAGARAAFTAGGAGRGLWGPVTPCAPPTSTHTHPHPTSQSTRTFLAGVVCVLTRAAPSWLLAGSPWCLACDGRSSSSSTGSGRVLVLEALLPLGRGGAERRAVAPASVASQHGHHQGTAWGPRQAPLTLRPQFPPHLVIGENPSSAWSLQSPQVQGPQSTSPSCVSSRGGPVLGLARGVTGVQGEGPGVYSSPVCTPNADKVSFLEMSSYRVSSRQSQAGRLVWPSPFLSKAAALSSSVALWA", "length": 789, "header": "tr|F1SG35-1|F1SG35_PIG Isoform 1 of GDP-fucose protein O-fucosyltransferase 2 OS=Sus scrofa OX=9823 GN=POFUT2 PE=1 SV=5 CANONICAL=F1SG35-1" }, "locus": { "chromosome": "13", "start_pos": 207818088, "end_pos": 207804944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013222.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013222.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012870.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012870.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BD23", "url": "https://www.uniprot.org/uniprotkb/A0A287BD23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5173214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "resource": "Reactome", "description": "O-glycosylation of TSR domain-containing proteins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptide-O-fucosyltransferase activity", "id": "GO:0046922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046922", "evidence": [ { "database": "UniProtKB", "id": "F1SG35", "url": "https://www.uniprot.org/uniprotkb/F1SG35" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SG35", "url": "https://www.uniprot.org/uniprotkb/F1SG35" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SG35", "url": "https://www.uniprot.org/uniprotkb/F1SG35" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SG35", "url": "https://www.uniprot.org/uniprotkb/F1SG35" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "fucose metabolic process", "id": "GO:0006004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006004", "evidence": [ { "database": "UniProtKB", "id": "F1SG35", "url": "https://www.uniprot.org/uniprotkb/F1SG35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "63644", "name": "", "equation": "L-seryl-[protein] + GDP-beta-L-fucose = 3-O-(alpha-L-fucosyl)-L-seryl-[protein] + GDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "63644", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/63644" } ] }, { "id": "70491", "name": "", "equation": "L-threonyl-[protein] + GDP-beta-L-fucose = 3-O-(alpha-L-fucosyl)-L-threonyl-[protein] + GDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70491", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70491" } ] }, { "id": "R-SSC-5173192", "name": "POFUT2 transfers fucose to TSR domain-containing proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum lumen, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-1463452" ], "output_participant_list": [ "R-ALL-9942379" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5173192", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173192" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1463452", "participant_name": "GDP-Fuc [endoplasmic reticulum lumen]", "crossref": [ { "id": "57273", "database": "ChEBI", "url": "" }, { "id": "ZINC000008551145", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-9942379", "participant_name": "GDP [endoplasmic reticulum lumen]", "crossref": [ { "id": "ZINC000008215481", "database": "ZINC", "url": "" }, { "id": "58189", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 789, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG35" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G01002UX", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G01758EA", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G01854VF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G03493DQ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G05599VD", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G06038KF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G06127FF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G06414UP", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G06818PI", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G06997MX", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G08324ZK", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G08946OO", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G09090NW", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G09106ES", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G10008BD", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G10016UC", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G10184NJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G12181PI", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G12826LZ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G14402NL", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G14437UU", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G14848DF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G15080WZ", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G15319IX", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G15562AE", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G17012LI", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G17713SD", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G17931GP", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G17988BN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G18012DQ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G18898JN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G19136DJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G19968XU", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G21495MJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G21971UP", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G22765SI", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G23386LT", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G23925XC", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G25356VY", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G26040WE", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G26238GL", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G27608TI", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G28040RO", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G29201UH", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G29279FJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G29572KN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G30025VG", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G30104JB", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G30868KJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G30876HB", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G31486NW", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G31612WK", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G32795LG", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G34122OI", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G34964CV", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G36108VA", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G36143CN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G36220TC", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G36434MJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G36855WW", "type": "O-linked", "subtype": "O-fucose core 1" }, { "glytoucan_ac": "G37818VH", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G38021ZK", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G39294YF", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G40758QW", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G41472ZT", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G41992AB", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G42329TE", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G42917OE", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G43810RS", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G44148BN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G44154YF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G45338JM", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G45475MA", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G45792OQ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G46105DB", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G46802OR", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G47060VP", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G47652UN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G47722SQ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G48998UF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G49112ZN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G49847RK", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G50236GJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G50616AZ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G51212WC", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G52241UD", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G52249WE", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G52343HW", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G54574KG", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G55060EN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G55326NR", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G55950OL", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G56073QF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G56085TD", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G56521WJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G56692NU", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G56824UY", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G57530IM", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G58661LU", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G60414HV", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G60484ZS", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G60605ZN", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G61266PA", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G61773FW", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G62299BL", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G62787MH", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G64313PA", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G64338IU", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G65552OG", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G65847ZH", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G67443GJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G67676ND", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G68388HI", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G68872DJ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G69277WM", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G69467AR", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G69519HZ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G69658MM", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G69911BZ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G70593HA", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G70732AH", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G71599BU", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G72804UE", "type": "O-linked", "subtype": "O-fucose core 1" }, { "glytoucan_ac": "G73091PK", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G73549JS", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G73972JE", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G76127XF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G76920VG", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G78500BR", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G78997FO", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G80776EG", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G81427TO", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G82576YO", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G82600GX", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G82641VL", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G82875QY", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G83333IO", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G85157IU", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G85196CF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G85357CZ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G85661BQ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G85722FF", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G86823GS", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G89112ZH", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G90037CR", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G90651HU", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G90809LY", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G91459AN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G92071FK", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G92996IT", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G93118GA", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G93755DD", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G96419RG", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G96881BQ", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G97031QN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G97392SN", "type": "O-linked", "subtype": "O-fucose core 2" }, { "glytoucan_ac": "G97501SC", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G97959DX", "type": "O-linked", "subtype": "O-fucose core, other" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 259, "end_pos": 261 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFI7-1", "uniprot_ac": "F1SFI7", "uniprot_id": "F1SFI7_PIG", "mass": { "chemical_mass": 38789.0, "monoisotopic_mass": 38789.0 }, "refseq": { "ac": "XP_005652426", "name": "alpha-2-HS-glycoprotein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652426" }, "gene_names": [ { "name": "AHSG", "type": "recommended", "evidence": [ { "id": "F1SFI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ] }, { "name": "AHSG", "type": "synonym", "evidence": [ { "id": "XP_005652426", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652426" } ] } ], "protein_names": [ { "name": "Alpha-2-HS-glycoprotein", "type": "recommended", "evidence": [ { "id": "F1SFI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFI7/entry#names_and_taxonomy" } ] }, { "name": "Fetuin-A", "type": "synonym", "evidence": [ { "id": "F1SFI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFI7/entry#names_and_taxonomy" } ] }, { "name": "alpha-2-HS-glycoprotein", "type": "synonym", "evidence": [ { "id": "XP_005652426", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652426" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AHSG", "url": "https://www.uniprot.org/uniprotkb/F1SFI7", "locus": { "chromosome": "13", "start_pos": 124438840, "end_pos": 124426308, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011799", "url": "https://www.ensembl.org/id/ENSSSCG00000011799" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011799", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011799", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00042", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397585", "url": "https://www.ncbi.nlm.nih.gov/gene/397585", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001363", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001363", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:397585", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397585", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KVWPRQP", "url": "https://omabrowser.org/oma/group/KVWPRQP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFI7", "url": "https://www.orthodb.org/?gene=F1SFI7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13814", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13814", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13814:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13814:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00031", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00031", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005652426", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652426", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BDE8", "url": "https://www.uniprot.org/uniprotkb/A0A287BDE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BDE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BDE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBI3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFI7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFI7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKVLILFFCLAQLWGCRAVPHGPILGYREPACDDVETEQAALAAVDYINKHLPRGYKHTLNQVDSVKVWPRRPAGEVFDIEIDTLETTCHVLDPTPLANCSVRQLTEHAVEGDCDFHVLKQDGQFSVLFAKCDSSPDSAEDVHKVCPNCPLLAPLNDSRVVHAAESALAAFNAQSNGSYLQLVEISRAQLVPLSASVSVEFAVAVTDCVAKEVIDPTKCNLLVEKQYGFCKGTVTAKVNEEDVAVTCTVFQTQPVVLQPQPAGADAGATPVVDAAATASPLADVPAASLVVGPMVVAVPPGIPPVHRSHYDLRHSFSGVASVESASGEAFHVGKTPKGAQPSIPAADGSVPVVRPCPGRIRHFKI", "length": 365, "header": "tr|F1SFI7-1|F1SFI7_PIG Isoform 1 of Alpha-2-HS-glycoprotein OS=Sus scrofa OX=9823 GN=AHSG PE=1 SV=3 CANONICAL=F1SFI7-1" }, "isoforms": [ { "isoform_ac": "A0A287BDE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFI7/entry#A0A287BDE8-1", "sequence": { "sequence": "MKVLILFFCLAQLWGCRAVPHGPILGYREPACDDVETEQAALAAVDYINKHLPRGYKHTLNQVDSVKVWPRRPAGEVFDIEIDTLETTCHVLDPTPLANCSVRQLTEHAVEGDCDFHVLKQDGQFSVLFAKCDSSPDSAEDVHKVCPNCPLLAPLNDSRVVHAAESALAAFNAQSNGSYLQLVEISRAQLVPLSASVSVEFAVAVTDCVAKEVIDPTKCNLLVEKQYGFCKGTVTAKVNEEDVAVTCTVFQTQPVVLQPQPAGADAGATPVVDAAATASPLADVPAASLCTDHTTTCATLSRVWPQWSQPPEKHSTWGKHPRGHSLAFLLLMAQFQWSALALGESDTSRSRRWSEMRFGTENIAAIVQVWVWVGALSAVKASAVWSILMSSLVP", "length": 394, "header": "tr|A0A287BDE8-1|F1SFI7_PIG Computationally mapped isoform of Alpha-2-HS-glycoprotein OS=Sus scrofa OX=9823 GN=AHSG PE=1 SV=2 CANONICAL=F1SFI7-1" }, "locus": { "chromosome": "13", "start_pos": 124438603, "end_pos": 124431846, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036715.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036715.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054117.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054117.2" } ] } }, { "isoform_ac": "A0A8W4FBI3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFI7/entry#A0A8W4FBI3-1", "sequence": { "sequence": "MKVLILFFCLAQLWGCRAVPHGPILGYREPACDDVETEQAALAAVDYINKHLPRGYKHTLNQVDSVKVWPRRPAGEVFDIEIDTLETTCHVLDPTPLANCSVRQLTEHAVEGDCDFHVLKQDGQFSVLFAKCDSSPDSAEDVHKVCPNCPLLAPLNDSRVVHAAESALAAFNAQSNGSYLQLVEISRAQLVPLSASVSVEFAVAVTDCVAKEVIDPTKCNLLVEKLPWWWDPWWWQFLRASRQCTDHTTTCATLSRVWPQWSQPPEKHSTWGKHPRGHSLAFLLLMAQFQWSALALGESDTSRSRRWSEMRFGTENIAAIVQVWVWVGALSAVKASAVWSILMSSLVP", "length": 348, "header": "tr|A0A8W4FBI3-1|F1SFI7_PIG Computationally mapped isoform of Alpha-2-HS-glycoprotein OS=Sus scrofa OX=9823 GN=AHSG PE=1 SV=1 CANONICAL=F1SFI7-1" }, "locus": { "chromosome": "13", "start_pos": 124438603, "end_pos": 124431846, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099846.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099846.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076627.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076627.1" } ] } }, { "isoform_ac": "F1SFI7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFI7/entry#F1SFI7-1", "sequence": { "sequence": "MKVLILFFCLAQLWGCRAVPHGPILGYREPACDDVETEQAALAAVDYINKHLPRGYKHTLNQVDSVKVWPRRPAGEVFDIEIDTLETTCHVLDPTPLANCSVRQLTEHAVEGDCDFHVLKQDGQFSVLFAKCDSSPDSAEDVHKVCPNCPLLAPLNDSRVVHAAESALAAFNAQSNGSYLQLVEISRAQLVPLSASVSVEFAVAVTDCVAKEVIDPTKCNLLVEKQYGFCKGTVTAKVNEEDVAVTCTVFQTQPVVLQPQPAGADAGATPVVDAAATASPLADVPAASLVVGPMVVAVPPGIPPVHRSHYDLRHSFSGVASVESASGEAFHVGKTPKGAQPSIPAADGSVPVVRPCPGRIRHFKI", "length": 365, "header": "tr|F1SFI7-1|F1SFI7_PIG Isoform 1 of Alpha-2-HS-glycoprotein OS=Sus scrofa OX=9823 GN=AHSG PE=1 SV=3 CANONICAL=F1SFI7-1" }, "locus": { "chromosome": "13", "start_pos": 124438470, "end_pos": 124431846, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012911.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012911.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012570.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012570.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FBI3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:397585", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397585", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A5WWI5-1", "protein_name": "Alpha-2-HS-glycoprotein 2", "gene_name": "ahsg2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTEVQHTYIYIQQTKLHSLHSVHSLQEYRFLLFSMQLWATVSVLGLLITGSWAQGVQTTVNLAECDSPEAEAAALAAQDYLNAQHTHGYKYILNRIEGNKVISRPNHEDTYLMELDFLETTCHVLDPTPVSLCPVRQQRSTAVEADCDFAVTKGLSIVAFKCKTEIETDDDCLGCPHLLPLNDTDGLQLIEASLDSFNQNNTLKTKFALFEIGRMTSQIVSGVPQYFAEYAIIGTNCSSYVDDSCIPQNHTVAIHGLCLAEGSAGLIDVDCKIFNPTQTVHTESNNATMRVQQLLHAHTFGPQHNPTVHGLRHHKLTALHDPAQSGLISAESTESAEVVAVLPQEAHVVKREVAAPEKPAVDAKVEKTPILVDPIALSCPGKKKHF", "length": 386 }, "evidence": [ { "id": "F1SFI7", "url": "https://omabrowser.org/oma/group/F1SFI7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P02765-1", "protein_name": "Alpha-2-HS-glycoprotein", "gene_name": "AHSG", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKSLVLLLCLAQLWGCHSAPHGPGLIYRQPNCDDPETEEAALVAIDYINQNLPWGYKHTLNQIDEVKVWPQQPSGELFEIEIDTLETTCHVLDPTPVARCSVRQLKEHAVEGDCDFQLLKLDGKFSVVYAKCDSSPDSAEDVRKVCQDCPLLAPLNDTRVVHAAKAALAAFNAQNNGSNFQLEEISRAQLVPLPPSTYVEFTVSGTDCVAKEATEAAKCNLLAEKQYGFCKATLSEKLGGAEVAVTCMVFQTQPVSSQPQPEGANEAVPTPVVDPDAPPSPPLGAPGLPPAGSPPDSHVLLAAPPGHQLHRAHYDLRHTFMGVVSLGSPSGEVSHPRKTRTVVQPSVGAAAGPVVPPCPGRIRHFKV", "length": 367 }, "evidence": [ { "id": "F1SFI7", "url": "https://omabrowser.org/oma/group/F1SFI7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P12763-1", "protein_name": "Alpha-2-HS-glycoprotein", "gene_name": "AHSG", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKSFVLLFCLAQLWGCHSIPLDPVAGYKEPACDDPDTEQAALAAVDYINKHLPRGYKHTLNQIDSVKVWPRRPTGEVYDIEIDTLETTCHVLDPTPLANCSVRQQTQHAVEGDCDIHVLKQDGQFSVLFTKCDSSPDSAEDVRKLCPDCPLLAPLNDSRVVHAVEVALATFNAESNGSYLQLVEISRAQFVPLPVSVSVEFAVAATDCIAKEVVDPTKCNLLAEKQYGFCKGSVIQKALGGEDVRVTCTLFQTQPVIPQPQPDGAEAEAPSAVPDAAGPTPSAAGPPVASVVVGPSVVAVPLPLHRAHYDLRHTFSGVASVESSSGEAFHVGKTPIVGQPSIPGGPVRLCPGRIRYFKI", "length": 359 }, "evidence": [ { "id": "F1SFI7", "url": "https://omabrowser.org/oma/group/F1SFI7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P24090-1", "protein_name": "Alpha-2-HS-glycoprotein", "gene_name": "Ahsg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKSLVLLLCFAQLWSCQSAPQGAGLGFRELACDDPETEHVALIAVDYLNKHLLQGFRQILNQIDKVKVWSRRPFGEVYELEIDTLETTCHALDPTPLANCSVRQQAEHAVEGDCDFHILKQDGQFRVLHAQCHSTPDSAEDVRKFCPRCPILIRFNDTNVVHTVKTALAAFNAQNNGTYFKLVEISRAQNVPFPVSTLVEFVIAATDCTGQEVTDPAKCNLLAEKQYGFCKATLIHRLGGEEVSVACKLFQTQPQPANANPAGPAPTVGQAAPVAPPAGPPESVVVGPVAVPLGLPDHRTHHDLRHAFSPVASVESASGEVLHSPKVGQPGDAGAAGPVAPLCPGRVRYFKI", "length": 352 }, "evidence": [ { "id": "F1SFI7", "url": "https://omabrowser.org/oma/group/F1SFI7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P29699-1", "protein_name": "Alpha-2-HS-glycoprotein", "gene_name": "Ahsg", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSLVLLLCFAQLWGCQSAPQGTGLGFRELACDDPEAEQVALLAVDYLNNHLLQGFKQVLNQIDKVKVWSRRPFGVVYEMEVDTLETTCHALDPTPLANCSVRQLTEHAVEGDCDFHILKQDGQFRVMHTQCHSTPDSAEDVRKLCPRCPLLTPFNDTNVVHTVNTALAAFNTQNNGTYFKLVEISRAQNVPLPVSTLVEFVIAATDCTAKEVTDPAKCNLLAEKQHGFCKANLMHNLGGEEVSVACKLFQTQPQPANANAVGPVPTANAALPADPPASVVVGPVVVPRGLSDHRTYHDLRHAFSPVASVESASGETLHSPKVGQPGAAGPVSPMCPGRIRHFKI", "length": 345 }, "evidence": [ { "id": "F1SFI7", "url": "https://omabrowser.org/oma/group/F1SFI7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "acute-phase response", "id": "GO:0006953", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006953", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" }, { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" }, { "name": "positive regulation of phagocytosis", "id": "GO:0050766", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050766", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" }, { "name": "negative regulation of bone mineralization", "id": "GO:0030502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030502", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "endopeptidase inhibitor activity", "id": "GO:0004866", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004866", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" }, { "name": "cysteine-type endopeptidase inhibitor activity", "id": "GO:0004869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004869", "evidence": [ { "database": "UniProtKB", "id": "F1SFI7", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFI7" }, { "id": "PS51529", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51529" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cystatin fetuin-A-type", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 133, "start_aa": "Tyr", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 156, "end_pos": 158 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKQ0-1", "uniprot_ac": "F1SKQ0", "uniprot_id": "F1SKQ0_PIG", "mass": { "chemical_mass": 50810.0, "monoisotopic_mass": 50810.0 }, "refseq": {}, "gene_names": [ { "name": "DDX17", "type": "recommended", "evidence": [ { "id": "F1SKQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ] } ], "protein_names": [ { "name": "RNA helicase", "type": "recommended", "evidence": [ { "id": "F1SKQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0/entry#names_and_taxonomy" } ] }, { "name": "3.6.4.13", "type": "synonym", "evidence": [ { "id": "F1SKQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DDX17", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0", "locus": {} } ], "crossref": [ { "id": "F1SKQ0", "url": "https://alphafold.ebi.ac.uk/entry/F1SKQ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000104", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000104", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18050", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18050", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18787", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18787", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FIKSTHN", "url": "https://omabrowser.org/oma/group/FIKSTHN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47958", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47958", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3899300", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3899300", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BEA5", "url": "https://www.uniprot.org/uniprotkb/A0A287BEA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKQ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVYYARYCCNHFTHKPFLVGAGSILRIPSLHVFMVPKVFCCFVVSRFGARGGGGLPPKKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNGRYPKLSIVLSLFQGLANFGMEVPRLGVESEL", "length": 445, "header": "tr|F1SKQ0-1|F1SKQ0_PIG Isoform 1 of RNA helicase OS=Sus scrofa OX=9823 GN=DDX17 PE=1 SV=4 CANONICAL=F1SKQ0-1" }, "isoforms": [ { "isoform_ac": "A0A287BEA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0/entry#A0A287BEA5-1", "sequence": { "sequence": "MRGGGFGDRDRDRDRGGFGARGGGGLPPKKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGSPALGNQMGLQRSI", "length": 418, "header": "tr|A0A287BEA5-1|F1SKQ0_PIG Computationally mapped isoform of RNA helicase OS=Sus scrofa OX=9823 GN=DDX17 PE=1 SV=1 CANONICAL=F1SKQ0-1" }, "locus": { "chromosome": "5", "start_pos": 9499321, "end_pos": 9486029, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054754.1", "url": "https://www.ensembl.org/id/ENSSSCT00000054754.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054427.1", "url": "https://www.ensembl.org/id/ENSSSCP00000054427.1" } ] } }, { "isoform_ac": "F1SKQ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0/entry#F1SKQ0-1", "sequence": { "sequence": "MSVYYARYCCNHFTHKPFLVGAGSILRIPSLHVFMVPKVFCCFVVSRFGARGGGGLPPKKFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNGRYPKLSIVLSLFQGLANFGMEVPRLGVESEL", "length": 445, "header": "tr|F1SKQ0-1|F1SKQ0_PIG Isoform 1 of RNA helicase OS=Sus scrofa OX=9823 GN=DDX17 PE=1 SV=4 CANONICAL=F1SKQ0-1" }, "locus": { "chromosome": "5", "start_pos": 9495446, "end_pos": 9488671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000110.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000110.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000108.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000108.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BEA5", "url": "https://www.uniprot.org/uniprotkb/A0A287BEA5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3899300", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3899300", "resource": "Reactome", "description": "SUMOylation of transcription cofactors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "pmid": "" }, { "name": "RNA helicase activity", "id": "GO:0003724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003724", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "alternative mRNA splicing, via spliceosome", "id": "GO:0000380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000380", "evidence": [ { "database": "UniProtKB", "id": "F1SKQ0", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] }, { "id": "R-SSC-3900047", "name": "SUMOylation of DDX17 with SUMO1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-3900090" ], "output_participant_list": [ "R-SSC-3900104" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3900047", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3900047" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-3900090", "participant_name": "DDX17 [nucleoplasm]", "crossref": [ { "id": "F1SKQ0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000000104", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000000108", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000000110", "database": "ENSEMBL", "url": "" }, { "id": "103229", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-3900104", "participant_name": "DDX17 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000000108", "database": "ENSEMBL", "url": "" }, { "id": "103229", "database": "VGNC", "url": "" }, { "id": "F1SKQ0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000000104", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000000110", "database": "ENSEMBL", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKQ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 445, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKQ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKQ0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" }, { "id": "PS51195", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51195" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DEAD-box RNA helicase Q", "eco_id": "ECO_0000259", "start_pos": 122, "end_pos": 150, "start_aa": "Phe", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 153, "end_pos": 328, "start_aa": "Phe", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 356, "end_pos": 445, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKQ0" }, { "id": "PRU00552", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00552" } ], "ann_type": "Motif_Annotation", "uniprotkb_annotation": "Q motif", "eco_id": "ECO_0000256", "start_pos": 122, "end_pos": 150, "start_aa": "Phe", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 370, "end_pos": 372 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG16-1", "uniprot_ac": "F1SG16", "uniprot_id": "F1SG16_PIG", "mass": { "chemical_mass": 30839.0, "monoisotopic_mass": 30839.0 }, "refseq": {}, "gene_names": [ { "name": "HCCS", "type": "recommended", "evidence": [ { "id": "F1SG16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG16" } ] } ], "protein_names": [ { "name": "Holocytochrome c-type synthase", "type": "recommended", "evidence": [ { "id": "F1SG16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG16/entry#names_and_taxonomy" } ] }, { "name": "4.4.1.17", "type": "synonym", "evidence": [ { "id": "F1SG16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG16/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Lyase that catalyzes the covalent linking of the heme group to the cytochrome C apoprotein to produce the mature functional cytochrome.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ4#function" }, { "database": "UniProtKB", "id": "RU363130", "url": "https://www.uniprot.org/uniprotkb/RU363130#function" }, { "database": "UniProtKB", "id": "A0A287BLS9", "url": "https://www.uniprot.org/uniprotkb/A0A287BLS9#function" }, { "database": "UniProtKB", "id": "F1SG16", "url": "https://www.uniprot.org/uniprotkb/F1SG16#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG16", "url": "https://www.uniprot.org/uniprotkb/F1SG16" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HCCS", "url": "https://www.uniprot.org/uniprotkb/F1SG16", "locus": { "chromosome": "X", "start_pos": 7894481, "end_pos": 7882723, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012111", "url": "https://www.ensembl.org/id/ENSSSCG00000012111" } ] } } ], "crossref": [ { "id": "F1SG16", "url": "https://alphafold.ebi.ac.uk/entry/F1SG16", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012111", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012111", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524598", "url": "https://www.ncbi.nlm.nih.gov/gene/100524598", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000511", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000511", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524598", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524598", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QCPIPHE", "url": "https://omabrowser.org/oma/group/QCPIPHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SG16", "url": "https://www.orthodb.org/?gene=F1SG16", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12743", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12743", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12743:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12743:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01265", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01265", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "22648", "url": "https://www.rhea-db.org/rhea/22648", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLS9", "url": "https://www.uniprot.org/uniprotkb/A0A287BLS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG16", "url": "https://www.uniprot.org/uniprotkb/F1SG16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG16-1", "url": "https://www.uniprot.org/uniprotkb/F1SG16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLSASTPAVAVQTPNASDHQTASPPSGCPMHEGNTKGCPVSTEPSDSACGSTTNSVPAHQDRAYEYVQCPVIGTLAENRDKLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSDKKWVYPSEQMFWNAMLRKGWKWKEEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGPSLLRFGGKAKEYSPRARIRSWMGYELPFDRHDWIVNRCGTEVRYVIDYYDGGAVNQDYQFTILDVRPALDSLSAVWDRMKVAWWRWTS", "length": 272, "header": "tr|F1SG16-1|F1SG16_PIG Isoform 1 of Holocytochrome c-type synthase OS=Sus scrofa OX=9823 GN=HCCS PE=1 SV=3 CANONICAL=F1SG16-1" }, "isoforms": [ { "isoform_ac": "A0A287BJQ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SG16/entry#A0A287BJQ4-1", "sequence": { "sequence": "MGLSASTPAVAVQTPNASDHQTASPPSGCPMHEGNTKGCPVSTEPSDSACGSTTNSVPAHQDRAYEYVQCPVIGTLAENRDKLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSDKKWVYPSEQMFWNAMLRKGWKWKEEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAYELPFDRHDWIVNRCGTEVRYVIDYYDGGAVNQDYQFTILDVRPALDSLSAVWDRMKVAWWRWTS", "length": 243, "header": "tr|A0A287BJQ4-1|F1SG16_PIG Computationally mapped isoform of Holocytochrome c-type synthase OS=Sus scrofa OX=9823 GN=HCCS PE=1 SV=1 CANONICAL=F1SG16-1" }, "locus": { "chromosome": "X", "start_pos": 7893231, "end_pos": 7883397, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100669.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100669.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079575.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079575.1" } ] } }, { "isoform_ac": "A0A287BLS9-1", "url": "https://www.uniprot.org/uniprotkb/F1SG16/entry#A0A287BLS9-1", "sequence": { "sequence": "MGLSASTPAVAVQTPNASDHQTASPPSGCPMHEGNTKGCPVSTEPSDSACGSTTNSVPAHQDRAYEYVQCPVIGTLAENRDKLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSDKKWVYPSEQMFWNAMLRKGWKWKEEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGPSLLRFGGKAKEYSPRARIRSWMGYELPFDRHDWIVNRCGTEVRYVIDYYDGGAVNQDYQFTILDVRPALDSLSAVWDRMKEYRHVDLTVLGMCSGALTWASGRCSVRLFKKWPALLKFLPQSRDPEEKCSRTLPMPSAQPEVELGSPDSC", "length": 334, "header": "tr|A0A287BLS9-1|F1SG16_PIG Computationally mapped isoform of Holocytochrome c-type synthase OS=Sus scrofa OX=9823 GN=HCCS PE=1 SV=2 CANONICAL=F1SG16-1" }, "locus": { "chromosome": "X", "start_pos": 7893805, "end_pos": 7883397, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048635.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048635.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057125.3", "url": "https://www.ensembl.org/id/ENSSSCP00000057125.3" } ] } }, { "isoform_ac": "F1SG16-1", "url": "https://www.uniprot.org/uniprotkb/F1SG16/entry#F1SG16-1", "sequence": { "sequence": "MGLSASTPAVAVQTPNASDHQTASPPSGCPMHEGNTKGCPVSTEPSDSACGSTTNSVPAHQDRAYEYVQCPVIGTLAENRDKLDPSNLMPPPNQTPAPDQPFALSTVREESSIPRADSDKKWVYPSEQMFWNAMLRKGWKWKEEDISQKDMYNIIRIHNQNNEQAWKEILKWEALHAAECPCGPSLLRFGGKAKEYSPRARIRSWMGYELPFDRHDWIVNRCGTEVRYVIDYYDGGAVNQDYQFTILDVRPALDSLSAVWDRMKVAWWRWTS", "length": 272, "header": "tr|F1SG16-1|F1SG16_PIG Isoform 1 of Holocytochrome c-type synthase OS=Sus scrofa OX=9823 GN=HCCS PE=1 SV=3 CANONICAL=F1SG16-1" }, "locus": { "chromosome": "X", "start_pos": 7893231, "end_pos": 7883397, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013246.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013246.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012890.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012890.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJQ4", "url": "https://www.uniprot.org/uniprotkb/A0A287BJQ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524598", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524598", "resource": "KEGG Pathway" }, { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2BAG4-1", "protein_name": "Holocytochrome c-type synthase", "gene_name": "hccsa.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRDTMSSPTGTVKAEGIMVPDVGGAPPQGCPMHRNVNESVPPPECPMHQASRDHTKKAPDVPAHQDRAYEFVECPMRAASGTKPTLSDINPANMMPPPNQQPSADQPFPLSVVREESTIPRAGAEQNWVYPSEQMFWNAMLRKGWRWNKDDINQNDMGDIIKIHNQNNEQAWQEILRWEKLHSKECPCGPSLLRFGGKAKDFSPRARFRYWMGSVEECQGLSERRIEVEACARARDVPKEWWRHELPFDRHDWIVDRCGKEVRYVIDYYDGGLVSKHTILDVRPAFDSLGAVWDRMKVTWWRWTST", "length": 306 }, "evidence": [ { "id": "F1SG16", "url": "https://omabrowser.org/oma/group/F1SG16/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SG16", "url": "https://www.uniprot.org/uniprotkb/F1SG16" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SG16", "url": "https://www.uniprot.org/uniprotkb/F1SG16" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SG16", "url": "https://www.uniprot.org/uniprotkb/F1SG16" } ], "pmid": "" }, { "name": "holocytochrome-c synthase activity", "id": "GO:0004408", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004408", "evidence": [ { "database": "UniProtKB", "id": "F1SG16", "url": "https://www.uniprot.org/uniprotkb/F1SG16" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "F1SG16", "url": "https://www.uniprot.org/uniprotkb/F1SG16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "22648", "name": "", "equation": "holo-[cytochrome c] = apo-[cytochrome c] + heme b", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "22648", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/22648" } ] }, { "id": "R-SSC-9866217", "name": "HCCS inserts heme into cytochrome c", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial inner membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9866217", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9866217" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG16-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 272, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG16-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG16" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKL2-1", "uniprot_ac": "F1SKL2", "uniprot_id": "F1SKL2_PIG", "mass": { "chemical_mass": 37657.0, "monoisotopic_mass": 37657.0 }, "refseq": { "ac": "XP_005663866", "name": "thiosulfate sulfurtransferase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663866" }, "gene_names": [ { "name": "TST", "type": "recommended", "evidence": [ { "id": "F1SKL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ] }, { "name": "TST", "type": "synonym", "evidence": [ { "id": "XP_005663866", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663866" } ] } ], "protein_names": [ { "name": "Sulfurtransferase", "type": "recommended", "evidence": [ { "id": "F1SKL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKL2/entry#names_and_taxonomy" } ] }, { "name": "thiosulfate sulfurtransferase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005663866", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663866" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TST", "url": "https://www.uniprot.org/uniprotkb/F1SKL2", "locus": { "chromosome": "5", "start_pos": 10759622, "end_pos": 10746890, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000133", "url": "https://www.ensembl.org/id/ENSSSCG00000000133" } ] } } ], "crossref": [ { "id": "F1SKL2", "url": "https://alphafold.ebi.ac.uk/entry/F1SKL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000133", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000133", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01445", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01445", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153230", "url": "https://www.ncbi.nlm.nih.gov/gene/100153230", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045078", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045078", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153230", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153230", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SKL2", "url": "https://www.orthodb.org/?gene=F1SKL2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11364", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11364", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11364:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11364:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00581", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00581", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1614558", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1614558", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005663866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663866", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16881", "url": "https://www.rhea-db.org/rhea/16881", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BPT5", "url": "https://www.uniprot.org/uniprotkb/A0A287BPT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BPT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BPT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEWAGRGVEGSGFEPANFSSGQGRAPGRRRGRVTRRAETMVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFDIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETRVSQGKGGKA", "length": 336, "header": "tr|F1SKL2-1|F1SKL2_PIG Isoform 1 of Sulfurtransferase OS=Sus scrofa OX=9823 GN=TST PE=1 SV=2 CANONICAL=F1SKL2-1" }, "isoforms": [ { "isoform_ac": "A0A287BPT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SKL2/entry#A0A287BPT5-1", "sequence": { "sequence": "MLDTGRLLALPGSESSGSPRACSREHVIAQSLEFGGSPGRPLVRPGVTRRAETMVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFDIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETRVSQGKGGKA", "length": 350, "header": "tr|A0A287BPT5-1|F1SKL2_PIG Computationally mapped isoform of Sulfurtransferase OS=Sus scrofa OX=9823 GN=TST PE=1 SV=2 CANONICAL=F1SKL2-1" }, "locus": { "chromosome": "5", "start_pos": 10759449, "end_pos": 10746890, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044466.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044466.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058443.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058443.2" } ] } }, { "isoform_ac": "F1SKL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKL2/entry#F1SKL2-1", "sequence": { "sequence": "MEWAGRGVEGSGFEPANFSSGQGRAPGRRRGRVTRRAETMVQQVLYRALVSTKWLAESVRTGKLGPSLRVLDASWYSPGTRDARKEYLERHVPGASFFDIEECRNRESPYEMMLPTEAGFADYVGRLGISNNTHVVVYDGDNLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSHPEPAIFKATLDRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTEPEPDAVGLDSGHIQGSVNMPFMNFLTEDGFEKGPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETRVSQGKGGKA", "length": 336, "header": "tr|F1SKL2-1|F1SKL2_PIG Isoform 1 of Sulfurtransferase OS=Sus scrofa OX=9823 GN=TST PE=1 SV=2 CANONICAL=F1SKL2-1" }, "locus": { "chromosome": "5", "start_pos": 10759449, "end_pos": 10750018, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000139.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000139.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000137.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000137.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BPT5", "url": "https://www.uniprot.org/uniprotkb/A0A287BPT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153230", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153230", "resource": "KEGG Pathway" }, { "id": "R-SSC-1614558", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1614558", "resource": "Reactome", "description": "Degradation of cysteine and homocysteine" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "sulfurtransferase activity", "id": "GO:0016783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016783", "evidence": [ { "database": "UniProtKB", "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ], "pmid": "" }, { "name": "5S rRNA binding", "id": "GO:0008097", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008097", "evidence": [ { "database": "UniProtKB", "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ], "pmid": "" }, { "name": "thiosulfate-cyanide sulfurtransferase activity", "id": "GO:0004792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004792", "evidence": [ { "database": "UniProtKB", "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ], "pmid": "" }, { "name": "rRNA import into mitochondrion", "id": "GO:0035928", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035928", "evidence": [ { "database": "UniProtKB", "id": "F1SKL2", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16881", "name": "", "equation": "thiosulfate + hydrogen cyanide = thiocyanate + sulfite + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16881", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16881" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKL2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 336, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKL2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKL2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKL2" }, { "id": "PS50206", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50206" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rhodanese", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 182, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 131, "end_pos": 133 }, { "start_pos": 17, "end_pos": 19 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKR7-1", "uniprot_ac": "F1SKR7", "uniprot_id": "F1SKR7_PIG", "mass": { "chemical_mass": 77486.0, "monoisotopic_mass": 77486.0 }, "refseq": { "ac": "XP_020932547", "name": "cell cycle checkpoint protein RAD17 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932547" }, "gene_names": [ { "name": "RAD17", "type": "recommended", "evidence": [ { "id": "F1SKR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ] }, { "name": "RAD17", "type": "synonym", "evidence": [ { "id": "XP_020932547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932547" } ] } ], "protein_names": [ { "name": "Cell cycle checkpoint protein RAD17", "type": "recommended", "evidence": [ { "id": "F1SKR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKR7/entry#names_and_taxonomy" } ] }, { "name": "cell cycle checkpoint protein RAD17 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020932547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932547" } ] } ], "function": [ { "annotation": "Essential for sustained cell growth, maintenance of chromosomal stability, and ATR-dependent checkpoint activation upon DNA damage. Has a weak ATPase activity required for binding to chromatin. Participates in the recruitment of the 9-1-1 (RAD1-RAD9-HUS1) complex and RHNO1 onto chromatin, and in CHEK1 activation. Involved in homologous recombination by mediating recruitment of the MRN complex to DNA damage sites. May also serve as a sensor of DNA replication progression.", "evidence": [ { "database": "UniProtKB", "id": "I3L8X3", "url": "https://www.uniprot.org/uniprotkb/I3L8X3#function" }, { "database": "UniProtKB", "id": "ARBA00053607", "url": "https://www.uniprot.org/uniprotkb/ARBA00053607#function" }, { "database": "UniProtKB", "id": "A0A287BR55", "url": "https://www.uniprot.org/uniprotkb/A0A287BR55#function" }, { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAD17", "url": "https://www.uniprot.org/uniprotkb/F1SKR7", "locus": { "chromosome": "16", "start_pos": 47529702, "end_pos": 47499669, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016960", "url": "https://www.ensembl.org/id/ENSSSCG00000016960" } ] } } ], "crossref": [ { "id": "F1SKR7", "url": "https://alphafold.ebi.ac.uk/entry/F1SKR7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016960", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016960", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18139", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18139", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515763", "url": "https://www.ncbi.nlm.nih.gov/gene/100515763", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004582", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018324", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018324", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515763", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515763", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BR55", "url": "https://www.orthodb.org/?gene=A0A287BR55", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12172", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12172", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12172:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12172:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03215", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03215", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-176187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5685938", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693607", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69473", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020932547", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932547", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BR55", "url": "https://www.uniprot.org/uniprotkb/A0A287BR55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BR55-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BR55-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8X3", "url": "https://www.uniprot.org/uniprotkb/I3L8X3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L8X3-1", "url": "https://www.uniprot.org/uniprotkb/I3L8X3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKTFLRPKVSSTKVTDWVDPSFDDFSETTNISTINATSLSVNNSSLRRKKVPSTLESRRSPTRKRGNLSSSKQIYSLENSKEYVSENEPWVDKYKPETQHELAVHKKKIEEVETWLKVEVLERQPTQGGSILLITGPPGCGKTATIKILSKEHGIQVQEWINPVLPEFQKDDFKEIFNPESSFHIFPYQSQIAVFKEFLLRATKYNKLQMLGDDLTTDKKIILVEDLPNQFYRDPHILHEVLRRYVQVGRCPLIFIISDSLSGDNNHRLLFPKEIQEECAISNISFNPVAPTIMMKFLNRIVTKEANKNGGKIIVPDKTSLELLCQGCSGDIRSAINSLQFSSSTGKNNLWPRKKGTSSLKSDAALSKSKRRQKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASVTELDSPRLPSHLSEYERDTLLIHPEEVVEMSHMPGDLFNLYLHQNYVDFFMDVDDLVRASEFLSFADILSGDWNTRSLLREYSTSVATRGVIHSNRARGFANCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFSDFCLSPVCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMMDLDSGDEAQLGGGQPTEEALGEPTPSTEPEPELLSLPLSQNSGSELPASQPRPFSAQGDMEEEDMIIEDYESDGT", "length": 685, "header": "tr|F1SKR7-1|F1SKR7_PIG Isoform 1 of Cell cycle checkpoint protein RAD17 OS=Sus scrofa OX=9823 GN=RAD17 PE=3 SV=3 CANONICAL=F1SKR7-1" }, "isoforms": [ { "isoform_ac": "A0A287BR55-1", "url": "https://www.uniprot.org/uniprotkb/F1SKR7/entry#A0A287BR55-1", "sequence": { "sequence": "MLLPEGELYFNVLQVVYSGWELSKFIMSKTFLRPKVSSTKVTDWVDPSFDDFSETTNISTINATSLSVNNSSLRRKKVPSTLESRRSPTRKRGNLSSSKQIYSLENSKEYVSENEPWVDKYKPETQHELAVHKKKIEEVETWLKVEVLERQPTQGGSILLITGPPGCGKTATIKILSKEHGIQVQEWINPVLPEFQKDDFKEIFNPESSFHIFPYQSQIAVFKEFLLRATKYNKLQMLGDDLTTDKKIILVEDLPNQFYRDPHILHEVLRRYVQVGRCPLIFIISDSLSGDNNHRLLFPKEIQEECAISNISFNPVAPTIMMKFLNRIVTKEANKNGGKIIVPDKTSLELLCQGCSGDIRSAINSLQFSSSTGKNNLWPRKKGTSSLKSDAALSKSKRRQKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASVTELDSPRLPSHLSEYERDTLLIHPEEVVEMSHMPGDLFNLYLHQNYVDFFMDVDDLVRASEFLSFADILSGDWNTRSLLREYSTSVATRGVIHSNRARGFANCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFSDFCLSPVCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMMDLDSGDEAQLGGGQPTEEALGEPTPSTEPEPELLSLPLSQNSGSELPASQPRPFSAQGDMEEEDMIIEDYESDGT", "length": 711, "header": "tr|A0A287BR55-1|F1SKR7_PIG Computationally mapped isoform of Cell cycle checkpoint protein RAD17 OS=Sus scrofa OX=9823 GN=RAD17 PE=3 SV=1 CANONICAL=F1SKR7-1" }, "locus": { "chromosome": "16", "start_pos": 47529232, "end_pos": 47499921, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039928.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039928.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059002.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059002.1" } ] } }, { "isoform_ac": "F1SKR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKR7/entry#F1SKR7-1", "sequence": { "sequence": "MSKTFLRPKVSSTKVTDWVDPSFDDFSETTNISTINATSLSVNNSSLRRKKVPSTLESRRSPTRKRGNLSSSKQIYSLENSKEYVSENEPWVDKYKPETQHELAVHKKKIEEVETWLKVEVLERQPTQGGSILLITGPPGCGKTATIKILSKEHGIQVQEWINPVLPEFQKDDFKEIFNPESSFHIFPYQSQIAVFKEFLLRATKYNKLQMLGDDLTTDKKIILVEDLPNQFYRDPHILHEVLRRYVQVGRCPLIFIISDSLSGDNNHRLLFPKEIQEECAISNISFNPVAPTIMMKFLNRIVTKEANKNGGKIIVPDKTSLELLCQGCSGDIRSAINSLQFSSSTGKNNLWPRKKGTSSLKSDAALSKSKRRQKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASVTELDSPRLPSHLSEYERDTLLIHPEEVVEMSHMPGDLFNLYLHQNYVDFFMDVDDLVRASEFLSFADILSGDWNTRSLLREYSTSVATRGVIHSNRARGFANCQGGGSSFRPLHKPQWFLINKKYRENCLAAKALFSDFCLSPVCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMMDLDSGDEAQLGGGQPTEEALGEPTPSTEPEPELLSLPLSQNSGSELPASQPRPFSAQGDMEEEDMIIEDYESDGT", "length": 685, "header": "tr|F1SKR7-1|F1SKR7_PIG Isoform 1 of Cell cycle checkpoint protein RAD17 OS=Sus scrofa OX=9823 GN=RAD17 PE=3 SV=3 CANONICAL=F1SKR7-1" }, "locus": { "chromosome": "16", "start_pos": 47529232, "end_pos": 47501472, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018469.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018469.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017969.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017969.3" } ] } }, { "isoform_ac": "I3L8X3-1", "url": "https://www.uniprot.org/uniprotkb/F1SKR7/entry#I3L8X3-1", "sequence": { "sequence": "MLLPEGELYFNVLQVVYSGWELSKFIMSKTFLRPKVSSTKVTDWVDPSFDDFSETTNISTINATSLSVNNSSLRRKKVPSTLESRRSPTRKRGNLSSSKQIYSLENSKEYVSENEPWVDKYKPETQHELAVHKKKIEEVETWLKVEVLERQPTQGGSILLITGPPGCGKTATIKILSKEHGIQVQEWINPVLPEFQKDDFKEIFNPESSFHIFPYQSQIAVFKEFLLRATKYNKLQMLGDDLTTDKKIILVEDLPNQFYRDPHILHEVLRRYVQVGRCPLIFIISDSLSGDNNHRLLFPKEIQEECAISNISFNPVAPTIMMKFLNRIVTKEANKNGGKIIVPDKTSLELLCQGCSGDIRSAINSLQFSSSTGKNNLWPRKKGTSSLKSDAALSKSKRRQKPDRVFENQEVQAIGGKDVSLFLFRALGKILYCKRASVTELDSPRLPSHLSEYERDTLLIHPEEVVEMSHMPGDLFNLYLHQNYVDFFMDVDDLVRASEFLSFADILSGDWNYRENCLAAKALFSDFCLSPVCLQTQLLPYLALLTIPMRNQAQISFIQDIGRLPLKRHFGRLKMEALTDREHGMMDLDSGDEAQLGGGQPTEEALGEPTPSTEPEPELLSLPLSQNSGSELPASQPRPFSAQGDMEEEDMIIEDYESDGT", "length": 661, "header": "tr|I3L8X3-1|I3L8X3_PIG Computationally mapped isoform of Cell cycle checkpoint protein RAD17 OS=Sus scrofa OX=9823 GN=RAD17 PE=3 SV=2 CANONICAL=F1SKR7-1" }, "locus": { "chromosome": "16", "start_pos": 47529232, "end_pos": 47499921, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023550.2", "url": "https://www.ensembl.org/id/ENSSSCT00000023550.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020484.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020484.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 634, "start_aa": "Thr", "end_pos": 634, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr634", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BR55", "url": "https://www.uniprot.org/uniprotkb/A0A287BR55" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515763", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515763", "resource": "KEGG Pathway" }, { "id": "R-SSC-176187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "resource": "Reactome", "description": "Activation of ATR in response to replication stress" }, { "id": "R-SSC-5685938", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "resource": "Reactome", "description": "HDR through Single Strand Annealing (SSA)" }, { "id": "R-SSC-5693607", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "resource": "Reactome", "description": "Processing of DNA double-strand break ends" }, { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" }, { "id": "R-SSC-69473", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "resource": "Reactome", "description": "G2/M DNA damage checkpoint" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "protein localization to site of double-strand break", "id": "GO:1990166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990166", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "mitotic intra-S DNA damage checkpoint signaling", "id": "GO:0031573", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031573", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "negative regulation of DNA replication", "id": "GO:0008156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008156", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "mitotic DNA replication checkpoint signaling", "id": "GO:0033314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033314", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "DNA damage checkpoint signaling", "id": "GO:0000077", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000077", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "DNA clamp loader activity", "id": "GO:0003689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003689", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "chromatin-protein adaptor activity", "id": "GO:0140463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140463", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "Rad17 RFC-like complex", "id": "GO:0031389", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031389", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" }, { "name": "chromosome, telomeric repeat region", "id": "GO:0140445", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140445", "evidence": [ { "database": "UniProtKB", "id": "F1SKR7", "url": "https://www.uniprot.org/uniprotkb/F1SKR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKR7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 685, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKR7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKR7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 634 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 284, "end_pos": 286 }, { "start_pos": 31, "end_pos": 33 }, { "start_pos": 36, "end_pos": 38 }, { "start_pos": 43, "end_pos": 45 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK44-1", "uniprot_ac": "F1SK44", "uniprot_id": "F1SK44_PIG", "mass": { "chemical_mass": 38712.0, "monoisotopic_mass": 38712.0 }, "refseq": { "ac": "XP_003121966", "name": "hsp90 co-chaperone Cdc37-like 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121966" }, "gene_names": [ { "name": "CDC37L1", "type": "recommended", "evidence": [ { "id": "F1SK44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK44" } ] }, { "name": "CDC37L1", "type": "synonym", "evidence": [ { "id": "XP_003121966", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121966" } ] } ], "protein_names": [ { "name": "Hsp90 co-chaperone Cdc37-like 1", "type": "recommended", "evidence": [ { "id": "F1SK44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK44/entry#names_and_taxonomy" } ] }, { "name": "hsp90 co-chaperone Cdc37-like 1", "type": "synonym", "evidence": [ { "id": "XP_003121966", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121966" } ] } ], "function": [ { "annotation": "Co-chaperone that binds to numerous proteins and promotes their interaction with Hsp70 and Hsp90.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRV6", "url": "https://www.uniprot.org/uniprotkb/A0A287BRV6#function" }, { "database": "UniProtKB", "id": "ARBA00037145", "url": "https://www.uniprot.org/uniprotkb/ARBA00037145#function" }, { "database": "UniProtKB", "id": "A0A4X1W1W4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1W4#function" }, { "database": "UniProtKB", "id": "A0A4X1W7Q8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7Q8#function" }, { "database": "UniProtKB", "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDC37L1", "url": "https://www.uniprot.org/uniprotkb/F1SK44", "locus": { "chromosome": "1", "start_pos": 217243151, "end_pos": 217287963, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005219", "url": "https://www.ensembl.org/id/ENSSSCG00000005219" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005219", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005219", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522234", "url": "https://www.ncbi.nlm.nih.gov/gene/100522234", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004918", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004918", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038189", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038189", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522234", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522234", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YAAKCRN", "url": "https://omabrowser.org/oma/group/YAAKCRN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SK44", "url": "https://www.orthodb.org/?gene=F1SK44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12800", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12800", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12800:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12800:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08565", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08565", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003121966", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121966", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BRV6", "url": "https://www.uniprot.org/uniprotkb/A0A287BRV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BRV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BRV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1W4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1W4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W1W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W1W4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7Q8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7Q8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK44-1", "url": "https://www.uniprot.org/uniprotkb/F1SK44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQPWPPPGPWSLPRAGGEAEEESDLDVSPGSPRCLQLPGGGSQMYSHGIEMACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQRERMCLWNMDAISKDVFNKSFINQDKRKETEDEDKSKSFMQKYEQKIRHFGMLSRWDDSQRFLSDNPYLVCEETAKYLILWCFHLEAEQKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSPSFQPVTVQNHVPHSGVGSIGLLESLPQNPDYLQYSINTAPCSLNSVVHKEDDEPKMMDTV", "length": 337, "header": "tr|F1SK44-1|F1SK44_PIG Isoform 1 of Hsp90 co-chaperone Cdc37-like 1 OS=Sus scrofa OX=9823 GN=CDC37L1 PE=1 SV=2 CANONICAL=F1SK44-1" }, "isoforms": [ { "isoform_ac": "A0A287BRV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SK44/entry#A0A287BRV6-1", "sequence": { "sequence": "MEQPWPPPGPWSLPRAGGEAEEESDLDVSPGSPRCLQLPGGGSQMYSHGIEMACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQRERMCLWNMDAISKDVFNKSFINQDKRKETEDEDKSKSFMQKYEQKIRHFGMLSRWDDSQRFLSDNPYLVCEETAKYLILWCFHLEAEQKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSPSFQPVTVQNHVPHSGVGSIGLLESLPQRHPKFHFFKYREDEEFPLWLSRNESD", "length": 330, "header": "tr|A0A287BRV6-1|F1SK44_PIG Computationally mapped isoform of Hsp90 co-chaperone Cdc37-like 1 OS=Sus scrofa OX=9823 GN=CDC37L1 PE=1 SV=2 CANONICAL=F1SK44-1" }, "locus": { "chromosome": "1", "start_pos": 217287782, "end_pos": 217267922, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055498.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055498.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059246.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059246.2" } ] } }, { "isoform_ac": "A0A4X1W1W4-1", "url": "https://www.uniprot.org/uniprotkb/F1SK44/entry#A0A4X1W1W4-1", "sequence": { "sequence": "MEQPWPPPGPWSLPRAGGEAEEESDLDVSPGSPRCLQLPGGGSQMYSHGIEMACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQRERMCLWNMDAISKDVFNKSFINQDKRKETEDEDKSKSFMQKYEQKIRHFGMLSRWDDSQRFLSDNPYLVCEETAKYLILWCFHLEAEQKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSPSFQPVTVQNHVPHSGVGSIGLLESLPQAPRF", "length": 308, "header": "tr|A0A4X1W1W4-1|F1SK44_PIG Computationally mapped isoform of Hsp90 co-chaperone Cdc37-like 1 OS=Sus scrofa OX=9823 GN=CDC37L1 PE=1 SV=1 CANONICAL=F1SK44-1" }, "locus": { "chromosome": "1", "start_pos": 217287782, "end_pos": 217266965, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074616.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074616.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063188.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063188.1" } ] } }, { "isoform_ac": "A0A4X1W7Q8-1", "url": "https://www.uniprot.org/uniprotkb/F1SK44/entry#A0A4X1W7Q8-1", "sequence": { "sequence": "MEQPWPPPGPWSLPRAGGEAEEESDLDVSPGSPRCLQLPGGGSQMYSHGIEMACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQRERMCLWNMDAISKDVFNKSFINQDKRKETEDEDKSKSFMQKYEQKIRHFGMLSRWDDSQRFLSDNPYLVCEETAKYLILWCFHLEAEQKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSPSFQPVTVQNHVPHSGVGSIGLLESLPQQPEQTNGHQPTHVLIVSTSNEIHLSISSALQKLGA", "length": 339, "header": "tr|A0A4X1W7Q8-1|F1SK44_PIG Computationally mapped isoform of Hsp90 co-chaperone Cdc37-like 1 OS=Sus scrofa OX=9823 GN=CDC37L1 PE=1 SV=1 CANONICAL=F1SK44-1" }, "locus": { "chromosome": "1", "start_pos": 217287782, "end_pos": 217243154, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094192.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094192.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077054.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077054.1" } ] } }, { "isoform_ac": "F1SK44-1", "url": "https://www.uniprot.org/uniprotkb/F1SK44/entry#F1SK44-1", "sequence": { "sequence": "MEQPWPPPGPWSLPRAGGEAEEESDLDVSPGSPRCLQLPGGGSQMYSHGIEMACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQRERMCLWNMDAISKDVFNKSFINQDKRKETEDEDKSKSFMQKYEQKIRHFGMLSRWDDSQRFLSDNPYLVCEETAKYLILWCFHLEAEQKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSPSFQPVTVQNHVPHSGVGSIGLLESLPQNPDYLQYSINTAPCSLNSVVHKEDDEPKMMDTV", "length": 337, "header": "tr|F1SK44-1|F1SK44_PIG Isoform 1 of Hsp90 co-chaperone Cdc37-like 1 OS=Sus scrofa OX=9823 GN=CDC37L1 PE=1 SV=2 CANONICAL=F1SK44-1" }, "locus": { "chromosome": "1", "start_pos": 217287782, "end_pos": 217264765, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005752.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005752.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005610.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005610.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BRV6", "url": "https://www.uniprot.org/uniprotkb/A0A287BRV6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522234", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522234", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A6H754-1", "protein_name": "Hsp90 co-chaperone Cdc37-like 1", "gene_name": "CDC37L1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEQPWPPPGPWSLPRAEGEAEEESDLDLSPGSPRCPQLPGGGTQMYSHGIEMACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAISELRQREEEWRQKEEALVQRERMCLWNMDAISKDVFNKSFINQDKRKETEDEDKSKSFMQKHEQKIRHFGMLSRWDDSQRFLSDHPYLVCEETAKYLILWCFHLEAEQKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSPNFQPVTVQNHVPHSGVGSIGLLESLPQNPDYLQYSINTALCSLNSVVHKEDDEPKMMDTV", "length": 337 }, "evidence": [ { "id": "F1SK44", "url": "https://omabrowser.org/oma/group/F1SK44/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NH83-1", "protein_name": "Hsp90 co-chaperone Cdc37-like 1", "gene_name": "CDC37L1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALWFPRYRDGSPAVEEDEQRELSPGSRQRLQTYSQEIELACQKEKEFVKHSVECTWNLAEAQQKLGSLALHNAESFDQEHAQAKTEVAELRWREEEWRRKEEALNQGERQDLWNTDLVSKEVFNKSFINQKRKETEDEDAAESFMKKHEQKIRHFGMMRRWDDSQRFLSDHPYLVSEETSKYLMLWCFHLEAEQKRALMEQVAHQAVVMQFIIEIAKNCNVDPRGCFRLFFQKAKTGEGYFEAFKSELEAFKTRVRIWSQSDSFQAILLYNPTVNPSLVEQLTSLSQNTGDLQGSTNTNEEESKMMDTV", "length": 310 }, "evidence": [ { "id": "F1SK44", "url": "https://omabrowser.org/oma/group/F1SK44/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5XIC3-1", "protein_name": "Hsp90 co-chaperone Cdc37-like 1", "gene_name": "Cdc37l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEQPWPPPGPWSFPRTGGETEEESDLDVSPSSSHYSPVPDGGAQMYSHGIELACQRQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQRERTCLWNVDAISKDVFNKSFINQDKRKTEDEDKSQSFMQKYEQKIRHFGMLSRWDDSQRFLSDHPYLVCEETAKYLILWCFHLEAEQKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKARVRLYAQSQSFAPVTVENHAPHSGVGCIGSAEPLPQNPDSLQCCPPAPLCSVDSVVHKEDDDRMMDTV", "length": 335 }, "evidence": [ { "id": "F1SK44", "url": "https://omabrowser.org/oma/group/F1SK44/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7L3B6-1", "protein_name": "Hsp90 co-chaperone Cdc37-like 1", "gene_name": "CDC37L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEQPWPPPGPWSLPRAEGEAEEESDFDVFPSSPRCPQLPGGGAQMYSHGIELACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQREKMCLWSTDAISKDVFNKSFINQDKRKDTEDEDKSESFMQKYEQKIRHFGMLSRWDDSQRFLSDHPYLVCEETAKYLILWCFHLEAEKKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYSQSQSFQPMTVQNHVPHSGVGSIGLLESLPQNPDYLQYSISTALCSLNSVVHKEDDEPKMMDTV", "length": 337 }, "evidence": [ { "id": "F1SK44", "url": "https://omabrowser.org/oma/group/F1SK44/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CZP7-1", "protein_name": "Hsp90 co-chaperone Cdc37-like 1", "gene_name": "Cdc37l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEQPWPPPGPWSFPRTGGETEEESDLDVSPSSSHYSPVPDGGAQMYSHGIELACQKQKEFVKSSVACKWNLAEAQQKLGSLALHNSESLDQEHAKAQTAVSELRQREEEWRQKEEALVQRERMCLWNMDAISKDVFNKSFINQDKRKTEEEDKSQSFMQKYEQKIRHFGMLSRWDDSQRFLSDHPHLVCEETAKYLILWCFHLEAEQKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCFRLFFQKAKAEEEGYFEAFKNELEAFKSRVRLYAQSQSLQPVTVQNHVPHSGVGCIGSLESLPQNPDSLQCCTPAPLCSVDSVVHKEDDDRMMDTV", "length": 335 }, "evidence": [ { "id": "F1SK44", "url": "https://omabrowser.org/oma/group/F1SK44/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44" } ], "pmid": "" }, { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44" } ], "pmid": "" }, { "name": "heat shock protein binding", "id": "GO:0031072", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031072", "evidence": [ { "database": "UniProtKB", "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44" } ], "pmid": "" }, { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F1SK44", "url": "https://www.uniprot.org/uniprotkb/F1SK44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK44" }, { "id": "SM01070", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01070" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cdc37 Hsp90 binding", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 289, "start_aa": "Ser", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHK6-1", "uniprot_ac": "F1SHK6", "uniprot_id": "F1SHK6_PIG", "mass": { "chemical_mass": 42189.0, "monoisotopic_mass": 42189.0 }, "refseq": {}, "gene_names": [ { "name": "PAX9", "type": "recommended", "evidence": [ { "id": "F1SHK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ] } ], "protein_names": [ { "name": "Paired box protein Pax-9", "type": "recommended", "evidence": [ { "id": "F1SHK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHK6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcription factor required for normal development of thymus, parathyroid glands, ultimobranchial bodies, teeth, skeletal elements of skull and larynx as well as distal limbs.", "evidence": [ { "database": "UniProtKB", "id": "A0A480DYY0", "url": "https://www.uniprot.org/uniprotkb/A0A480DYY0#function" }, { "database": "UniProtKB", "id": "ARBA00002731", "url": "https://www.uniprot.org/uniprotkb/ARBA00002731#function" }, { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PAX9", "url": "https://www.uniprot.org/uniprotkb/F1SHK6", "locus": { "chromosome": "7", "start_pos": 63324711, "end_pos": 63346310, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001942", "url": "https://www.ensembl.org/id/ENSSSCG00000001942" } ] } } ], "crossref": [ { "id": "F1SHK6", "url": "https://alphafold.ebi.ac.uk/entry/F1SHK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001942", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001942", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00131", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00131", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156821", "url": "https://www.ncbi.nlm.nih.gov/gene/100156821", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156821", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156821", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "STMAPYP", "url": "https://omabrowser.org/oma/group/STMAPYP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480DYY0", "url": "https://www.orthodb.org/?gene=A0A480DYY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45636", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45636", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45636:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45636:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00292", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00292", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480DYY0", "url": "https://www.uniprot.org/uniprotkb/A0A480DYY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480DYY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A480DYY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHK6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "IVGTISRREERTWEGISDFRRIFQVPLGGPSGLFLGWCIPLCPQSAARRIPGCQEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPAPQPALPYNHIYSYPSPISAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQGVSDSSPYHSPKVEEWSSLGRSNFPAAAPHAVNGLEKGALEQEAKYAQAPNGLPAVSSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGHGWQHASGTPLSPHNCDIPASLAFKGMQAAREGSHSVTASAL", "length": 394, "header": "tr|F1SHK6-1|F1SHK6_PIG Isoform 1 of Paired box protein Pax-9 OS=Sus scrofa OX=9823 GN=PAX9 PE=4 SV=4 CANONICAL=F1SHK6-1" }, "isoforms": [ { "isoform_ac": "A0A480DYY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHK6/entry#A0A480DYY0-1", "sequence": { "sequence": "MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPAPQPALPYNHIYSYPSPISAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQGVSDSSPYHSPKVEEWSSLGRSNFPAAAPHAVNGLEKGALEQEAKYAQAPNGLPAVSSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGHGWQHASGTPLSPHNCDIPASLAFKGMQAAREGSHSVTASAL", "length": 341, "header": "tr|A0A480DYY0-1|F1SHK6_PIG Computationally mapped isoform of Paired box protein Pax-9 OS=Sus scrofa OX=9823 GN=PAX9 PE=4 SV=1 CANONICAL=F1SHK6-1" }, "locus": { "chromosome": "7", "start_pos": 63341760, "end_pos": 63327649, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089806.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089806.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071726.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071726.1" } ] } }, { "isoform_ac": "F1SHK6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHK6/entry#F1SHK6-1", "sequence": { "sequence": "IVGTISRREERTWEGISDFRRIFQVPLGGPSGLFLGWCIPLCPQSAARRIPGCQEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPAPQPALPYNHIYSYPSPISAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQGVSDSSPYHSPKVEEWSSLGRSNFPAAAPHAVNGLEKGALEQEAKYAQAPNGLPAVSSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGHGWQHASGTPLSPHNCDIPASLAFKGMQAAREGSHSVTASAL", "length": 394, "header": "tr|F1SHK6-1|F1SHK6_PIG Isoform 1 of Paired box protein Pax-9 OS=Sus scrofa OX=9823 GN=PAX9 PE=4 SV=4 CANONICAL=F1SHK6-1" }, "locus": { "chromosome": "7", "start_pos": 63346180, "end_pos": 63327649, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002174.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002174.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002123.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002123.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 227, "start_aa": "Thr", "end_pos": 227, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr227", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 332, "start_aa": "Thr", "end_pos": 332, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr332", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A480DYY0", "url": "https://www.uniprot.org/uniprotkb/A0A480DYY0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156821", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156821", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TLV6-1", "protein_name": "Paired box protein Pax-9", "gene_name": "PAX9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPAPQPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQGVSDSSPYHSPKVEEWSSLGRSNFPAAAPHAVNGLEKGALEQEAKYAQAPNGLPAVSSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGHGWQHASGTPLSPHNCDIPASLAFKGMQAAREGSHSVTASAL", "length": 342 }, "evidence": [ { "id": "F1SHK6", "url": "https://omabrowser.org/oma/group/F1SHK6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47242-1", "protein_name": "Paired box protein Pax-9", "gene_name": "Pax9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPAPQPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGSVALPRTWPSSHSVTDILGIRSITDQGVSDSSPYHSPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLPAVSSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGHGWQHAGSTPLSPHNCDIPASLAFKGMQAAREGSHSVTASAL", "length": 342 }, "evidence": [ { "id": "F1SHK6", "url": "https://omabrowser.org/oma/group/F1SHK6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P55771-1", "protein_name": "Paired box protein Pax-9", "gene_name": "PAX9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPTPQPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGSVAMPRTWPSSHSVTDILGIRSITDQVSDSSPYHSPKVEEWSSLGRNNFPAAAPHAVNGLEKGALEQEAKYGQAPNGLPAVGSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGHGWQHAGGTSLSPHNCDIPASLAFKGMQAAREGSHSVTASAL", "length": 341 }, "evidence": [ { "id": "F1SHK6", "url": "https://omabrowser.org/oma/group/F1SHK6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2L4T2-1", "protein_name": "Paired box protein Pax-9", "gene_name": "Pax9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPAFGEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGAIGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLAQQGHYDSYKQHQPAPQPALPYNHIYSYPSPITAAAAKVPTPPGVPAIPGSVALPRTWPSSHSVTDILGIRSITDQGVSDSSPYHSPKVEEWSSLGRNNFSAAAPHAVNGLEKGALEQEAKYGQAPNGLPAVSSFVSASSMAPYPTPAQVSPYMTYSAAPSGYVAGHGWQHAGSTPLSPHNCDIPTSLAFKGMQAAREGSHSVAASAL", "length": 342 }, "evidence": [ { "id": "F1SHK6", "url": "https://omabrowser.org/oma/group/F1SHK6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1SHK6", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHK6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 394, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHK6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHK6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHK6" }, { "id": "PS51057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Paired", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 183, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 227, 332 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJN1-1", "uniprot_ac": "F1SJN1", "uniprot_id": "F1SJN1_PIG", "mass": { "chemical_mass": 203738.0, "monoisotopic_mass": 203738.0 }, "refseq": {}, "gene_names": [ { "name": "MED12L", "type": "recommended", "evidence": [ { "id": "F1SJN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" } ] } ], "protein_names": [ { "name": "Mediator complex subunit 12L", "type": "synonym", "evidence": [ { "id": "F1SJN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJN1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJN1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MED12L", "url": "https://www.uniprot.org/uniprotkb/F1SJN1", "locus": { "chromosome": "13", "start_pos": 91625855, "end_pos": 91271539, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011714", "url": "https://www.ensembl.org/id/ENSSSCG00000011714" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011714", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011714", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524586", "url": "https://www.ncbi.nlm.nih.gov/gene/100524586", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46007", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46007", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46007:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46007:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09497", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09497", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12145", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12145", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A480EIJ3", "url": "https://www.uniprot.org/uniprotkb/A0A480EIJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480EIJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A480EIJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0PNP4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0PNP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0PNP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0PNP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QQJ6", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QQJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QQJ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QQJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJN1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAFGLLSYEQRPLKRPRLGPPDVYPQDPKQKEDELTAVNVKQGFNNQPAFTGDEHGSARNIVINPSKIGAYFSSILAEKLKLNTFQDTGKKKPQVNTKDNYWLVPARSQSAIHSWFSDLAGNKPLAILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKMTCAYYSAISEAKIKKRQTTDPNLEWTQISTRYLREQLAKISDFYHMASSTGDGPVPVPPDVEQAMRQWEYNEKLAFHMFQEGMLEKHEYLTWILDVLEKIRPMDDDLLKLLLPLMLQVRARIYEVEQQIKQRGRAVEVRWSFDKCQESTAGVTISRVLHTLEVLDRHCFDRTDSSNSMETLYHKIFWANQNKDNQEVAPNDEAVVTLLCEWAVSCKRSGKHRAMAVAKLLEKRQAEIEAERCGESEVLDEKESISSASLAGSSLPVFQNVLLRFLDTQAPSLSDPNSECEKVEFVNLVLLFCEFIRHDVFSHDAYMCTLISRGDLSVTASTRPRSPAGENADENYPKDHDVKMEIFSPMPGESCENANPSLGRRMSVNGEKLLKREKPRELIFPSNYDLLRHLQYATHFPIPLDESSSHECNQRTILLYGVGKERDEARHQLKKITKDILKILNKKSTTEPGVGDEGQKARKNKQEAFPTLETVFTKLQLLSYFDQHQVTSQISNNVLEQITSFASGTSYHLPLAHHIQLIFDLMEPALNINGLIDFAIQLLNELSVVEAELLLKSSSLAGSYTTGLCVCIVAVLRRYHSCLILNPEQTAQVFEGLCGVVKHVVNPSECSSPERCILAYLYDLYVSCSHLRSKFGDLFSSACSKVKQTIYNNVIPANSNLRWDPDFMMDFIENPSARTINYSMLGKILSDNAANRYSFVCNTLMNVCMGHQDAGRINDIANFSSELTACCTVLSSEWLGVLKALCCSSNHVWGFNDVLCTVDVSDLSFHDSLATFIAILIARQCFSLEDVVQHVALPSLLAAACGDADAEPGARMTCRLLLHLFRAPQACLLPQATGKPFPGIRSSCDRHLLAAAHNSIEVGAVFAVLKAIMMLGDAKIGNSNVNSLKNDDFTMRGLRRDGNADDIWTASQNPKSCGKSISIETANLREYARYVLRTICQQEWVGEHCLKEPERLCTDKELILDPVLSNMQAQKLLQLICYPHGIKECTEGDNLQRQHIKRILQNLEQWTLRQSWLELQLMIKQCLKDPGSGSVAEMNNLLDNIAKATIEVFQQSADLNNNSSNSGMGLFNPNGIGSADASSTRQNGIKTFLSSSERRGVWLVAPLIARLPTSVQGRVLKAAGEELEKGQHLGSSSKKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLQNQVNQILSNWREERYQDDIKARQMMHEALQLRLNLVGGMFDTVQRSTQWTTDWALLLLQIITSGTVDMHTNNELFTTVLDMLGVLINGTLASDLSNASPGGSEENKRAYMNLVKKLKKELGDKRSESIDKVRQLLPLPKQTCDVITCEPMGSLIDTKGNKIAGFDSIDKKQGLQVSTKQKVSPWDLFEGQKNPAPLSWAWFGTVRMDRKVVKYEEQHHLLLYHTHPMPKPRSYYLEPLPLPPEEEEEEPTSPISQEPERKSAELSDQGKTATDEEKKTKGRKRKTKSSSRVDEYPQSGIYRVPPNYSPISSQMMHHPQSALWGYNLMGQPQQPGFFLQNQSLPPGGSRLDPTGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQQQRLLRQAQTRPFQQFPRQGLQQTQQQQQTAALVRQLQKQLSSNQPQQGVTPYGHPSHF", "length": 1810, "header": "tr|F1SJN1-1|F1SJN1_PIG Isoform 1 of Mediator complex subunit 12L OS=Sus scrofa OX=9823 GN=MED12L PE=3 SV=4 CANONICAL=F1SJN1-1" }, "isoforms": [ { "isoform_ac": "A0A480EIJ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1/entry#A0A480EIJ3-1", "sequence": { "sequence": "MAAFGLLSYEQRPLKRPRLGPPDVYPQDPKQKEDELTAVNVKQGFNNQPAFTGDEHGSARNIVINPSKIGAYFSSILAEKLKLNTFQDTGKKKPQVNTKDNYWLVPARSQSAIHSWFSDLAGNKPLAILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKMTCAYYSAISEAKIKKRQTTDPNLEWTQISTRYLREQLAKISDFYHMASSTGDGPVPVPPDVEQAMRQWEYNEKLAFHMFQEGMLEKHEYLTWILDVLEKIRPMDDDLLKLLLPLMLQYSDEFVQSAYLSRRLAYFCARRLALLLSDSPGLLAAHSPHVMIGPNNASIGAPSPGPPGPGMSPVQLAFSDFLSCAQHGPLVYGLSCMLQTVTLCCPSALVWNYSTNDNKSANPGSPLDLLQVAPSSLPMPGGNTAFNQQVRARIYEVEQQIKQRGRAVEVRWSFDKCQESTAGVTISRVLHTLEVLDRHCFDRTDSSNSMETLYHKIFWANQNKDNQEVAPNDEAVVTLLCEWAVSCKRSGKHRAMAVAKLLEKRQAEIEAERCGESEVLDEKESISSASLAGSSLPVFQNVLLRFLDTQAPSLSDPNSECEKVEFVNLVLLFCEFIRHDVFSHDAYMCTLISRGDLSVTASTRPRSPAGENADENYPKDHDVKMEIFSPMPGESCENANPSLGRRMSVNGEKLLKREKPRELIFPSNYDLLRHLQYATHFPIPLDESSSHECNQRTILLYGVGKERDEARHQLKKITKDILKILNKKSTTEPGVGDEGQKARKNKQEAFPTLETVFTKLQLLSYFDQHQVTSQISNNVLEQITSFASGTSYHLPLAHHIQLIFDLMEPALNINGLIDFAIQLLNELSVVEAELLLKSSSLAGSYTTGLCVCIVAVLRRYHSCLILNPEQTAQVFEGLCGVVKHVVNPSECSSPERCILAYLYDLYVSCSHLRSKFGDLFSSACSKVKQTIYNNVIPANSNLRWDPDFMMDFIENPSARTINYSMLGKILSDNAANRYSFVCNTLMNVCMGHQDAGRINDIANFSSELTACCTVLSSEWLGVLKALCCSSNHVWGFNDVLCTVDVSDLSFHDSLATFIAILIARQCFSLEDVVQHVALPSLLAAACGDADAEPGARMTCRLLLHLFRAPQACLLPQATGKPFPGIRSSCDRHLLAAAHNSIEVGAVFAVLKAIMMLGDAKIGNSNVNSLKNDDFTMRGLRRDGNADDIWTASQNPKSCGKSISIETANLREYARYVLRTICQQEWVGEHCLKEPERLCTDKELILDPVLSNMQAQKLLQLICYPHGIKECTEGDNLQRQHIKRILQNLEQWTLRQSWLELQLMIKQCLKDPGSGSVAEMNNLLDNIAKATIEVFQQSADLNNNSSNSGMGLFNPNGIGSADASSTRQNGIKTFLSSSERRGVWLVAPLIARLPTSVQGRVLKAAGEELEKGQHLGSSSKKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLQNQVNQILSNWREERYQDDIKARQMMHEALQLRLNLVGGMFDTVQRSTQWTTDWALLLLQIITSGTVDMHTNNELFTTVLDMLGVLINGTLASDLSNASPGGSEENKRAYMNLVKKLKKELGDKRSESIDKVRQLLPLPKQTCDVITCEPMGSLIDTKGNKIAGFDSIDKKQGLQVSTKQKVSPWDLFEGQKNPAPLSWAWFGTVRMDRKVVKYEEQHHLLLYHTHPMPKPRSYYLEPLPLPPEEEEEEPTSPISQEPERKSAELSDQGKTATDEEKKTKGRKRKTKSSSRVDEYPQSGIYRVPPNYSPISSQMMHHPQSALWGYNLMGQPQQPGFFLQNQSLPPGGSRLDPTGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQQQRLLRQAQTRPFQQGQPGDQAALFAAQARPSPQLPQYPGLQQAQTMPQGYTMYGTQMPLQQTPQQQAGSVVLSPTYNSRTYPAAHSNPALMERLRQMQPPPSGYAQQQASPYLQPLTGSQRLNHQSLQQSPLVGGGIDAVLTSAHPNLPSVPLPQDPMRSRQPQVRQQQRLLQMQQPQQTPQPQQPPQPQQSSQPQNQTLGLQAMQPQQPLFPRQGLQQTQQQQQTAALVRQLQKQLSSNQPQQGVTPYGHPSHF", "length": 2147, "header": "tr|A0A480EIJ3-1|F1SJN1_PIG Computationally mapped isoform of Mediator complex subunit 12L OS=Sus scrofa OX=9823 GN=MED12L PE=3 SV=1 CANONICAL=F1SJN1-1" }, "locus": { "chromosome": "13", "start_pos": 91621964, "end_pos": 91273315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059594.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059594.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038991.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038991.2" } ] } }, { "isoform_ac": "A0A8D0PNP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1/entry#A0A8D0PNP4-1", "sequence": { "sequence": "MAAFGLLSYEQRPLKRPRLGPPDVYPQDPKQKEDELTAVNVKQGFNNQPAFTGDEHGSARNIVINPSKIGAYFSSILAEKLKLNTFQDTGKKKPQVNTKDNYWLVPARSQSAIHSWFSDLAGNKPLAILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKMTCAYYSAISEAKIKKRQTTDPNLEWTQISTRYLREQLAKISDFYHMASSTGDGPVPVPPDVEQAMRQWEYNEKLAFHMFQEGMLEKHEYLTWILDVLEKIRPMDDDLLKLLLPLMLQYSDEFVQSAYLSRRLAYFCARRLALLLSDSPGLLAAHSPHVMIGPNNASIGAPSPGPPGPGMSPVQLAFSDFLSCAQHGPLVYGLSCMLQTVTLCCPSALVWNYSTNDNKSANPGSPLDLLQVAPSSLPMPGGNTAFNQQVRARIYEVEQQIKQRGRAVEVRWSFDKCQESTAGVTISRVLHTLEVLDRHCFDRTDSSNSMETLYHKIFWANQNKDNQEVAPNDEAVVTLLCEWAVSCKRSGKHRAMAVAKLLEKRQAEIEAERCGESEVLDEKESISSASLAGSSLPVFQNVLLRFLDTQAPSLSDPNSECEKVEFVNLVLLFCEFIRHDVFSHDAYMCTLISRGDLSVTASTRPRSPAGENADENYPKDHDVKMEIFSPMPGESCENANPSLGRRMSVNGEKLLKREKPRELIFPSNYDLLRHLQYATHFPIPLVSCCLSL", "length": 722, "header": "tr|A0A8D0PNP4-1|F1SJN1_PIG Computationally mapped isoform of Mediator complex subunit 12L OS=Sus scrofa OX=9823 GN=MED12L PE=3 SV=1 CANONICAL=F1SJN1-1" }, "locus": { "chromosome": "13", "start_pos": 91378116, "end_pos": 91273315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069290.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069290.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071558.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071558.1" } ] } }, { "isoform_ac": "A0A8D0QQJ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1/entry#A0A8D0QQJ6-1", "sequence": { "sequence": "MAAFGLLSYEQRPLKRPRLGPPDVYPQDPKQKEDELTAVNVKQGFNNQPAFTGDEHGSARNIVINPSKIGAYFSSILAEKLKLNTFQDTGKKKPQVNTKDNYWLVPARSQSAIHSWFSDLAGNKPLAILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKMTCAYYSAISEAKIKKRQTTDPNLEWTQISTRYLREQLAKISDFYHMASSTGDGPVPVPPDVEQAMRQWEYNEKLAFHMFQEGMLEKHEYLTWILDVLEKIRPMDDDLLKLLLPLMLQYSDEFVQSAYLSRRLAYFCARRLALLLSDSPGLLAAHSPHVMIGPNNASIGAPSPGPPGPGMSPVQLAFSDFLSCAQHGPLVYGLSCMLQTVTLCCPSALVWNYSTNDNKSANPGSPLDLLQVAPSSLPMPGGNTAFNQQVRARIYEVEQQIKQRGRAVEVRWSFDKCQESTAGVTISRVLHTLEVLDRHCFDRTDSSNSMETLYHKIFWANQNKDNQEVAPNDEAVVTLLCEWAVSCKRSGKHRAMAVAKLLEKRQAEIEAERCGESEVLDEKESISSASLAGSSLPVFQNVLLRFLDTQAPSLSDPNSECEKVEFVNLVLLFCEFIRHDVFSHDAYMCTLISRGDLSVTASTRPRSPAGENADENYPKDHDVKMEEQTLMAHMGIDSGTTNIFDEVDKSDFKTDFGSEFPIFSPMPGESCENANPSLGRRMSVNGEKLLKREKPRELIFPSNYDLLRHLQYATHFPIPLVSCC", "length": 754, "header": "tr|A0A8D0QQJ6-1|F1SJN1_PIG Computationally mapped isoform of Mediator complex subunit 12L OS=Sus scrofa OX=9823 GN=MED12L PE=3 SV=1 CANONICAL=F1SJN1-1" }, "locus": { "chromosome": "13", "start_pos": 91378107, "end_pos": 91273315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051573.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051573.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057991.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057991.2" } ] } }, { "isoform_ac": "F1SJN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1/entry#F1SJN1-1", "sequence": { "sequence": "MAAFGLLSYEQRPLKRPRLGPPDVYPQDPKQKEDELTAVNVKQGFNNQPAFTGDEHGSARNIVINPSKIGAYFSSILAEKLKLNTFQDTGKKKPQVNTKDNYWLVPARSQSAIHSWFSDLAGNKPLAILAKKVPILSKKEDVFAYLAKYSVPMVRATWLIKMTCAYYSAISEAKIKKRQTTDPNLEWTQISTRYLREQLAKISDFYHMASSTGDGPVPVPPDVEQAMRQWEYNEKLAFHMFQEGMLEKHEYLTWILDVLEKIRPMDDDLLKLLLPLMLQVRARIYEVEQQIKQRGRAVEVRWSFDKCQESTAGVTISRVLHTLEVLDRHCFDRTDSSNSMETLYHKIFWANQNKDNQEVAPNDEAVVTLLCEWAVSCKRSGKHRAMAVAKLLEKRQAEIEAERCGESEVLDEKESISSASLAGSSLPVFQNVLLRFLDTQAPSLSDPNSECEKVEFVNLVLLFCEFIRHDVFSHDAYMCTLISRGDLSVTASTRPRSPAGENADENYPKDHDVKMEIFSPMPGESCENANPSLGRRMSVNGEKLLKREKPRELIFPSNYDLLRHLQYATHFPIPLDESSSHECNQRTILLYGVGKERDEARHQLKKITKDILKILNKKSTTEPGVGDEGQKARKNKQEAFPTLETVFTKLQLLSYFDQHQVTSQISNNVLEQITSFASGTSYHLPLAHHIQLIFDLMEPALNINGLIDFAIQLLNELSVVEAELLLKSSSLAGSYTTGLCVCIVAVLRRYHSCLILNPEQTAQVFEGLCGVVKHVVNPSECSSPERCILAYLYDLYVSCSHLRSKFGDLFSSACSKVKQTIYNNVIPANSNLRWDPDFMMDFIENPSARTINYSMLGKILSDNAANRYSFVCNTLMNVCMGHQDAGRINDIANFSSELTACCTVLSSEWLGVLKALCCSSNHVWGFNDVLCTVDVSDLSFHDSLATFIAILIARQCFSLEDVVQHVALPSLLAAACGDADAEPGARMTCRLLLHLFRAPQACLLPQATGKPFPGIRSSCDRHLLAAAHNSIEVGAVFAVLKAIMMLGDAKIGNSNVNSLKNDDFTMRGLRRDGNADDIWTASQNPKSCGKSISIETANLREYARYVLRTICQQEWVGEHCLKEPERLCTDKELILDPVLSNMQAQKLLQLICYPHGIKECTEGDNLQRQHIKRILQNLEQWTLRQSWLELQLMIKQCLKDPGSGSVAEMNNLLDNIAKATIEVFQQSADLNNNSSNSGMGLFNPNGIGSADASSTRQNGIKTFLSSSERRGVWLVAPLIARLPTSVQGRVLKAAGEELEKGQHLGSSSKKERDRQKQKSMSLLSQQPFLSLVLTCLKGQDEQREGLLTSLQNQVNQILSNWREERYQDDIKARQMMHEALQLRLNLVGGMFDTVQRSTQWTTDWALLLLQIITSGTVDMHTNNELFTTVLDMLGVLINGTLASDLSNASPGGSEENKRAYMNLVKKLKKELGDKRSESIDKVRQLLPLPKQTCDVITCEPMGSLIDTKGNKIAGFDSIDKKQGLQVSTKQKVSPWDLFEGQKNPAPLSWAWFGTVRMDRKVVKYEEQHHLLLYHTHPMPKPRSYYLEPLPLPPEEEEEEPTSPISQEPERKSAELSDQGKTATDEEKKTKGRKRKTKSSSRVDEYPQSGIYRVPPNYSPISSQMMHHPQSALWGYNLMGQPQQPGFFLQNQSLPPGGSRLDPTGSFVPTNTKQALSNMLQRRSGAMMQPPSLHAITSQQQLIQMKLLQQQQQQRLLRQAQTRPFQQFPRQGLQQTQQQQQTAALVRQLQKQLSSNQPQQGVTPYGHPSHF", "length": 1810, "header": "tr|F1SJN1-1|F1SJN1_PIG Isoform 1 of Mediator complex subunit 12L OS=Sus scrofa OX=9823 GN=MED12L PE=3 SV=4 CANONICAL=F1SJN1-1" }, "locus": { "chromosome": "13", "start_pos": 91621964, "end_pos": 91273315, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012824.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012824.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012486.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012486.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0PNP4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0PNP4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SJN1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "F1SJN1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F1SJN1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SJN1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SJN1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SJN1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mediator complex", "id": "GO:0016592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016592", "evidence": [ { "database": "UniProtKB", "id": "F1SJN1", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1232, "end_pos": 1234, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1233, "end_pos": 1235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1438, "end_pos": 1440, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1447, "end_pos": 1449, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1656, "end_pos": 1658, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1690, "end_pos": 1692, "annotation": "n_glycosylation_sequon" }, { "start_pos": 852, "end_pos": 854, "annotation": "n_glycosylation_sequon" }, { "start_pos": 893, "end_pos": 895, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJN1" }, { "id": "SM01281", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01281" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mediator complex subunit Med12", "eco_id": "ECO_0000259", "start_pos": 101, "end_pos": 161, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1232, "end_pos": 1234 }, { "start_pos": 1233, "end_pos": 1235 }, { "start_pos": 1438, "end_pos": 1440 }, { "start_pos": 1447, "end_pos": 1449 }, { "start_pos": 1656, "end_pos": 1658 }, { "start_pos": 1690, "end_pos": 1692 }, { "start_pos": 852, "end_pos": 854 }, { "start_pos": 893, "end_pos": 895 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHC1-1", "uniprot_ac": "F1SHC1", "uniprot_id": "F1SHC1_PIG", "mass": { "chemical_mass": 49927.0, "monoisotopic_mass": 49927.0 }, "refseq": { "ac": "XP_003355423", "name": "tubulin alpha-1C chain isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355423" }, "gene_names": [ { "name": "LOC100127131", "type": "recommended", "evidence": [ { "id": "F1SHC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ] }, { "name": "LOC100127131", "type": "synonym", "evidence": [ { "id": "XP_003355423", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355423" } ] } ], "protein_names": [ { "name": "Tubulin alpha chain", "type": "recommended", "evidence": [ { "id": "F1SHC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC1/entry#names_and_taxonomy" } ] }, { "name": "tubulin alpha-1C chain isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003355423", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355423" } ] } ], "function": [ { "annotation": "Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule end, where a stabilizing cap forms. Below the cap, tubulin dimers are in GDP-bound state, owing to GTPase activity of alpha-tubulin.", "evidence": [ { "database": "UniProtKB", "id": "F1RYV9", "url": "https://www.uniprot.org/uniprotkb/F1RYV9#function" }, { "database": "UniProtKB", "id": "RU000352", "url": "https://www.uniprot.org/uniprotkb/RU000352#function" }, { "database": "UniProtKB", "id": "A0A5G2RB77", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB77#function" }, { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1#function" } ] }, { "annotation": "Tubulin is the major constituent of microtubules, protein filaments consisting of alpha- and beta-tubulin heterodimers. Microtubules grow by the addition of GTP-tubulin dimers to the microtubule end, where a stabilizing cap forms. Below the cap, tubulin dimers are in GDP-bound state, owing to GTPase activity of alpha-tubulin.", "evidence": [ { "database": "UniProtKB", "id": "F1RYV9", "url": "https://www.uniprot.org/uniprotkb/F1RYV9#function" }, { "database": "UniProtKB", "id": "ARBA00093431", "url": "https://www.uniprot.org/uniprotkb/ARBA00093431#function" }, { "database": "UniProtKB", "id": "A0A5G2RB77", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB77#function" }, { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100127131", "url": "https://www.uniprot.org/uniprotkb/F1SHC1", "locus": {} } ], "crossref": [ { "id": "F1SHC1", "url": "https://alphafold.ebi.ac.uk/entry/F1SHC1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000194", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000194", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02186", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02186", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100127131", "url": "https://www.ncbi.nlm.nih.gov/gene/100127131", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000217", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000217", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017975", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017975", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018316", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018316", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100127131", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100127131", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PEGTHIN", "url": "https://omabrowser.org/oma/group/PEGTHIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHC1", "url": "https://www.orthodb.org/?gene=F1SHC1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11588", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11588", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00091", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00091", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03953", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03953", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-190840", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-190840", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2132295", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2500257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2500257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3371497", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371497", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610787", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610787", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620920", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620920", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5626467", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5626467", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807878", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811434", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68877", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68877", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8852276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8955332", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8955332", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9646399", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9646399", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9648025", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9648025", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9668328", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9668328", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983189", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983189", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9833482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003355423", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355423", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2RB77", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RB77-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RB77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYV9", "url": "https://www.uniprot.org/uniprotkb/F1RYV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RYV9-1", "url": "https://www.uniprot.org/uniprotkb/F1RYV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHC1-1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGEDEGEEY", "length": 449, "header": "tr|F1SHC1-1|F1SHC1_PIG Isoform 1 of Tubulin alpha chain OS=Sus scrofa OX=9823 GN=LOC100127131 PE=1 SV=3 CANONICAL=F1SHC1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RB77-1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1/entry#A0A5G2RB77-1", "sequence": { "sequence": "MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEFYGKGLELG", "length": 443, "header": "tr|A0A5G2RB77-1|F1SHC1_PIG Computationally mapped isoform of Tubulin alpha chain OS=Sus scrofa OX=9823 GN=LOC100127131 PE=1 SV=1 CANONICAL=F1SHC1-1" }, "locus": { "chromosome": "5", "start_pos": 15270119, "end_pos": 15261043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088236.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088236.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074262.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074262.1" } ] } }, { "isoform_ac": "F1RYV9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1/entry#F1RYV9-1", "sequence": { "sequence": "MLCTSPQTQSSPLRNQLSIWNITVFCRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGEDEGEEY", "length": 474, "header": "tr|F1RYV9-1|F1SHC1_PIG Computationally mapped isoform of Tubulin alpha chain OS=Sus scrofa OX=9823 GN=LOC100127131 PE=1 SV=4 CANONICAL=F1SHC1-1" }, "locus": { "chromosome": "5", "start_pos": 15269678, "end_pos": 15232884, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012196.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012196.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011883.4", "url": "https://www.ensembl.org/id/ENSSSCP00000011883.4" } ] } }, { "isoform_ac": "F1SHC1-1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1/entry#F1SHC1-1", "sequence": { "sequence": "MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGEDEGEEY", "length": 449, "header": "tr|F1SHC1-1|F1SHC1_PIG Isoform 1 of Tubulin alpha chain OS=Sus scrofa OX=9823 GN=LOC100127131 PE=1 SV=3 CANONICAL=F1SHC1-1" }, "locus": { "chromosome": "5", "start_pos": 15269678, "end_pos": 15261043, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000207.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000207.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000205.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000205.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RYV9", "url": "https://www.uniprot.org/uniprotkb/F1RYV9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100127131", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100127131", "resource": "KEGG Pathway" }, { "id": "R-SSC-190840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-190840", "resource": "Reactome", "description": "Microtubule-dependent trafficking of connexons from Golgi to the plasma membrane" }, { "id": "R-SSC-2132295", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "resource": "Reactome", "description": "MHC class II antigen presentation" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2500257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2500257", "resource": "Reactome", "description": "Resolution of Sister Chromatid Cohesion" }, { "id": "R-SSC-3371497", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371497", "resource": "Reactome", "description": "HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand" }, { "id": "R-SSC-380320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "resource": "Reactome", "description": "Recruitment of NuMA to mitotic centrosomes" }, { "id": "R-SSC-5610787", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610787", "resource": "Reactome", "description": "Hedgehog 'off' state" }, { "id": "R-SSC-5620920", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620920", "resource": "Reactome", "description": "Cargo trafficking to the periciliary membrane" }, { "id": "R-SSC-5620924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620924", "resource": "Reactome", "description": "Intraflagellar transport" }, { "id": "R-SSC-5626467", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5626467", "resource": "Reactome", "description": "RHO GTPases activate IQGAPs" }, { "id": "R-SSC-5663220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "resource": "Reactome", "description": "RHO GTPases Activate Formins" }, { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" }, { "id": "R-SSC-6811434", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "resource": "Reactome", "description": "COPI-dependent Golgi-to-ER retrograde traffic" }, { "id": "R-SSC-68877", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68877", "resource": "Reactome", "description": "Mitotic Prometaphase" }, { "id": "R-SSC-8852276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "resource": "Reactome", "description": "The role of GTSE1 in G2/M progression after G2 checkpoint" }, { "id": "R-SSC-8955332", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8955332", "resource": "Reactome", "description": "Carboxyterminal post-translational modifications of tubulin" }, { "id": "R-SSC-9646399", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9646399", "resource": "Reactome", "description": "Aggrephagy" }, { "id": "R-SSC-9648025", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9648025", "resource": "Reactome", "description": "EML4 and NUDC in mitotic spindle formation" }, { "id": "R-SSC-9668328", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9668328", "resource": "Reactome", "description": "Sealing of the nuclear envelope (NE) by ESCRT-III" }, { "id": "R-SSC-983189", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983189", "resource": "Reactome", "description": "Kinesins" }, { "id": "R-SSC-9833482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9833482", "resource": "Reactome", "description": "PKR-mediated signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "B9DGT7-1", "protein_name": "Tubulin alpha-2 chain", "gene_name": "TUBA2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY", "length": 450 }, "evidence": [ { "id": "F1SHC1", "url": "https://omabrowser.org/oma/group/F1SHC1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P68363-1", "protein_name": "Tubulin alpha-1B chain", "gene_name": "TUBA1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY", "length": 451 }, "evidence": [ { "id": "F1SHC1", "url": "https://omabrowser.org/oma/group/F1SHC1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P68373-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "Tuba1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGDDEGEEY", "length": 449 }, "evidence": [ { "id": "F1SHC1", "url": "https://omabrowser.org/oma/group/F1SHC1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q0WV25-1", "protein_name": "Tubulin alpha-4 chain", "gene_name": "TUBA4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAEGGDDEDDEGEEY", "length": 450 }, "evidence": [ { "id": "F1SHC1", "url": "https://omabrowser.org/oma/group/F1SHC1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q3ZCJ7-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGDDEGDEY", "length": 449 }, "evidence": [ { "id": "F1SHC1", "url": "https://omabrowser.org/oma/group/F1SHC1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYZ1-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "Tuba1c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSAEGDDEGEEY", "length": 449 }, "evidence": [ { "id": "F1SHC1", "url": "https://omabrowser.org/oma/group/F1SHC1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q71U36-1", "protein_name": "Tubulin alpha-1A chain", "gene_name": "TUBA1A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY", "length": 451 }, "evidence": [ { "id": "F1SHC1", "url": "https://omabrowser.org/oma/group/F1SHC1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9BQE3-1", "protein_name": "Tubulin alpha-1C chain", "gene_name": "TUBA1C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSADGEDEGEEY", "length": 449 }, "evidence": [ { "id": "F1SHC1", "url": "https://omabrowser.org/oma/group/F1SHC1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "structural constituent of cytoskeleton", "id": "GO:0005200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005200", "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "microtubule-based process", "id": "GO:0007017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007017", "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "pmid": "" }, { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "pmid": "" }, { "name": "neuron differentiation", "id": "GO:0030182", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030182", "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "pmid": "" }, { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "F1SHC1", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHC1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 449, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHC1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHC1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" }, { "id": "SM00865", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00865" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tubulin/FtsZ 2-layer sandwich", "eco_id": "ECO_0000259", "start_pos": 248, "end_pos": 393, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC1" }, { "id": "SM00864", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00864" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tubulin/FtsZ GTPase", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 246, "start_aa": "Phe", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 380, "end_pos": 382 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG69-1", "uniprot_ac": "F1SG69", "uniprot_id": "F1SG69_PIG", "mass": { "chemical_mass": 55692.0, "monoisotopic_mass": 55692.0 }, "refseq": { "ac": "XP_020926661", "name": "beta-secretase 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926661" }, "gene_names": [ { "name": "BACE2", "type": "recommended", "evidence": [ { "id": "F1SG69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ] }, { "name": "BACE2", "type": "synonym", "evidence": [ { "id": "XP_020926661", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926661" } ] } ], "protein_names": [ { "name": "Beta-secretase 2", "type": "synonym", "evidence": [ { "id": "F1SG69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG69/entry#names_and_taxonomy" } ] }, { "name": "beta-secretase 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020926661", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926661" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BACE2", "url": "https://www.uniprot.org/uniprotkb/F1SG69", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000012074", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012074", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517374", "url": "https://www.ncbi.nlm.nih.gov/gene/100517374", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517374", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517374", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CDTVNDE", "url": "https://omabrowser.org/oma/group/CDTVNDE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R620", "url": "https://www.orthodb.org/?gene=A0A5G2R620", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SG69", "url": "https://www.orthodb.org/?gene=F1SG69", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47965", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47965", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47965:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47965:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00026", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00026", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020926661", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926661", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QQZ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R620", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R620", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R620-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R620-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG69-1", "url": "https://www.uniprot.org/uniprotkb/F1SG69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGALLRALLLPLLAQWLLRAAPALAPAPFTLPLRVASTTSRGAAPTPGPGPPAEPRADGLALALEPAGGAANFLAMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGAPHPYIDSYFDAERSSTYRPKGFDVTVKYTQGSWTGLVGEDVVTIPKGFNSSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVAQAKIPNVFSMQMCGAGLPVAGTGTNGGSLVLGGIEPTLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFNAVVEAVARTSLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVVFDRARKRVGFAASPCAEIAGAPVSEISGPFSTEDVASNCVPALPVNEPILWIVSYTLMSVCGIILLILIILLLLPLRCRHLPRDPEVVNDESSLVRHRWK", "length": 514, "header": "tr|F1SG69-1|F1SG69_PIG Isoform 1 of Beta-secretase 2 OS=Sus scrofa OX=9823 GN=BACE2 PE=3 SV=3 CANONICAL=F1SG69-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQZ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SG69/entry#A0A5G2QQZ1-1", "sequence": { "sequence": "MGALLRALLLPLLAQWLLRAAPALAPAPFTLPLRVASTTSRGAAPTPGPGPPAEPRADGLALALEPAGGAANFLAMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGAPHPYIDSYFDAERSSTYRPKGFDVTVKYTQGSWTGLVGEDVVTIPKGFNSSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVAQAKIPNVFSMQMCGAGLPVAGTGTNGGSLVLGGIEPTLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFNAVVEAVARTSLLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVVFDRARKRVGFAASPCAEIAGAPVSEISGPFSTEDVASNCVPALPVNEPILWIVSYTLMSVCGIILLILIILLLLPLRCRHLPRDPEVVNDESSLVRHRWK", "length": 464, "header": "tr|A0A5G2QQZ1-1|F1SG69_PIG Computationally mapped isoform of Beta-secretase 2 OS=Sus scrofa OX=9823 GN=BACE2 PE=3 SV=1 CANONICAL=F1SG69-1" }, "locus": { "chromosome": "13", "start_pos": 204694509, "end_pos": 204600888, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076411.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076411.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067159.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067159.1" } ] } }, { "isoform_ac": "A0A5G2R620-1", "url": "https://www.uniprot.org/uniprotkb/F1SG69/entry#A0A5G2R620-1", "sequence": { "sequence": "MGALLRALLLPLLAQWLLRAAPALAPAPFTLPLRVASTTSRGAAPTPGPGPPAEPRADGLALALEPAGGAANFLAMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGAPHPYIDSYFDAERSSTYRPKGFDVTVKYTQGSWTGLVGEDVVTIPKGFNSSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVAQAKIPNVFSMQMCGAGLPVAGTGTNGGSLVLGGIEPTLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFNAVVEAVARTSLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQKLQVLQCQKFRGLSQQKM", "length": 392, "header": "tr|A0A5G2R620-1|F1SG69_PIG Computationally mapped isoform of Beta-secretase 2 OS=Sus scrofa OX=9823 GN=BACE2 PE=3 SV=1 CANONICAL=F1SG69-1" }, "locus": { "chromosome": "13", "start_pos": 204694312, "end_pos": 204600888, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075815.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075815.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069580.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069580.1" } ] } }, { "isoform_ac": "F1SG69-1", "url": "https://www.uniprot.org/uniprotkb/F1SG69/entry#F1SG69-1", "sequence": { "sequence": "MGALLRALLLPLLAQWLLRAAPALAPAPFTLPLRVASTTSRGAAPTPGPGPPAEPRADGLALALEPAGGAANFLAMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGAPHPYIDSYFDAERSSTYRPKGFDVTVKYTQGSWTGLVGEDVVTIPKGFNSSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVAQAKIPNVFSMQMCGAGLPVAGTGTNGGSLVLGGIEPTLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFNAVVEAVARTSLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVVFDRARKRVGFAASPCAEIAGAPVSEISGPFSTEDVASNCVPALPVNEPILWIVSYTLMSVCGIILLILIILLLLPLRCRHLPRDPEVVNDESSLVRHRWK", "length": 514, "header": "tr|F1SG69-1|F1SG69_PIG Isoform 1 of Beta-secretase 2 OS=Sus scrofa OX=9823 GN=BACE2 PE=3 SV=3 CANONICAL=F1SG69-1" }, "locus": { "chromosome": "13", "start_pos": 204694509, "end_pos": 204600888, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013206.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013206.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012854.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012854.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 166, "start_aa": "Asn", "end_pos": 166, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn166", "evidence": [ { "id": "A0A5G2QQZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ1#ptm_processing" }, { "id": "PIRSR609121-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR609121-3" }, { "id": "A0A5G2R620", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R620#ptm_processing" }, { "id": "F1SG69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG69#ptm_processing" } ], "filter_code": "00100000000000000000.00010000000000.0.01000" }, { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 362, "start_aa": "Asn", "end_pos": 362, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn362", "evidence": [ { "id": "A0A5G2R620", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R620#ptm_processing" }, { "id": "PIRSR609121-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR609121-3" }, { "id": "F1SG69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG69#ptm_processing" } ], "filter_code": "00100000000000000000.00010000000000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 46, "start_aa": "Thr", "end_pos": 46, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr46", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQZ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQZ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517374", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517374", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TP02-1", "protein_name": "Beta-secretase 2", "gene_name": "BACE2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGALARALLLPLLAQWLLRAAPALASAPFTLPLRVASATSRGAVPTPGPGPPAEPRADGLALALEPAGGAANFLAMVDNLQGDSGRGYYLEMQIGTPPQKLQILVDTGSSNFAVAGAPHPYIDSYFDAERSSTYRPKGFDVTVKYTQGSWTGFVGEDVVTIPKGFNSSFLVNIATIFESENFFLPGIRWNGILGLAYATLAKPSSSLETFFDSLVAQAKIPNIFSMQMCGAGLPVAGSGTNGGSLVLGGIEPTLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARTSLIPEFSEGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVVFDRAQKRVGFAASPCAEIAGAPVSEISGPFSTEDIASNCVPALPLNEPVLWIVSYTLMSVCGVILLVLITLLLLPVRCRHHPRDPEVVNDESSLVRHRWK", "length": 514 }, "evidence": [ { "id": "F1SG69", "url": "https://omabrowser.org/oma/group/F1SG69/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6IE75-1", "protein_name": "Beta-secretase 2", "gene_name": "Bace2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGALLRALLLPLLAQWLLRAVPVLAPAPFTLPLQVAGAANHRASTVPGLGTPELPRADGLALALEPARATANFLAMVDNLQGDSGRGYYLEMLIGTPPQKVRILVDTGSSNFAVAGAPHSYIDTYFDSESSSTYHSKGFEVTVKYTQGSWTGFVGEDLVTIPKGFNSSFLVNIATIFESENFFLPGIKWNGILGLAYAALAKPSSSLETFFDSLVAQAKIPDIFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARTSLIPEFSDGFWTGAQLACWTNSETPWAYFPKISIYLRDENASRSFRITILPQLYIQPMMGAGFNYECYRFGISSSTNALVIGATVMEGFYVVFDRAQRRVGFAVSPCAEIAGTTVSEISGPFSTEDIASNCVPAQALNEPILWIVSYALMSVCGAILLVLILLLLFPLHCRHAPRDPEVVNDESSLVRHRWK", "length": 514 }, "evidence": [ { "id": "F1SG69", "url": "https://omabrowser.org/oma/group/F1SG69/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9JL18-1", "protein_name": "Beta-secretase 2", "gene_name": "Bace2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGALLRALLLLVLAQWLLSAVPALAPAPFTLPLQVAGATNHRASAVPGLGTPELPRADGLALALEPVRATANFLAMVDNLQGDSGRGYYLEMLIGTPPQKVQILVDTGSSNFAVAGAPHSYIDTYFDSESSSTYHSKGFDVTVKYTQGSWTGFVGEDLVTIPKGFNSSFLVNIATIFESENFFLPGIKWNGILGLAYAALAKPSSSLETFFDSLVAQAKIPDIFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQNLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARTSLIPEFSDGFWTGAQLACWTNSETPWAYFPKISIYLRDENASRSFRITILPQLYIQPMMGAGFNYECYRFGISSSTNALVIGATVMEGFYVVFDRAQRRVGFAVSPCAEIEGTTVSEISGPFSTEDIASNCVPAQALNEPILWIVSYALMSVCGAILLVLILLLLLPLHCRHAPRDPEVVNDESSLVRHRWK", "length": 514 }, "evidence": [ { "id": "F1SG69", "url": "https://omabrowser.org/oma/group/F1SG69/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y5Z0-1", "protein_name": "Beta-secretase 2", "gene_name": "BACE2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGALARALLLPLLAQWLLRAAPELAPAPFTLPLRVAAATNRVVAPTPGPGTPAERHADGLALALEPALASPAGAANFLAMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYIDTYFDTERSSTYRSKGFDVTVKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYVIFDRAQKRVGFAASPCAEIAGAAVSEISGPFSTEDVASNCVPAQSLSEPILWIVSYALMSVCGAILLVLIVLLLLPFRCQRRPRDPEVVNDESSLVRHRWK", "length": 518 }, "evidence": [ { "id": "F1SG69", "url": "https://omabrowser.org/oma/group/F1SG69/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "pmid": "" }, { "name": "membrane protein ectodomain proteolysis", "id": "GO:0006509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006509", "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "pmid": "" }, { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "pmid": "" }, { "name": "amyloid-beta metabolic process", "id": "GO:0050435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050435", "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "aspartic-type endopeptidase activity", "id": "GO:0004190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004190", "evidence": [ { "database": "UniProtKB", "id": "F1SG69", "url": "https://www.uniprot.org/uniprotkb/F1SG69" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG69" }, { "id": "PS51767", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51767" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase A1", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 425, "start_aa": "Tyr", "end_aa": "Ala", "glycosite_overlap": "Asn166,Asn362" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [ 166, 362 ], "o_linked_sites": [ 46 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 166, "end_pos": 168 }, { "start_pos": 362, "end_pos": 364 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 2 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_n_linked_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 2 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_n_linked_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHU0-1", "uniprot_ac": "F1SHU0", "uniprot_id": "F1SHU0_PIG", "mass": { "chemical_mass": 35392.0, "monoisotopic_mass": 35392.0 }, "refseq": { "ac": "XP_020934876", "name": "3-hydroxyisobutyrate dehydrogenase, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934876" }, "gene_names": [ { "name": "HIBADH", "type": "recommended", "evidence": [ { "id": "F1SHU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" } ] }, { "name": "HIBADH", "type": "synonym", "evidence": [ { "id": "XP_020934876", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934876" } ] } ], "protein_names": [ { "name": "3-hydroxyisobutyrate dehydrogenase, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SHU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHU0/entry#names_and_taxonomy" } ] }, { "name": "1.1.1.31", "type": "synonym", "evidence": [ { "id": "F1SHU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHU0/entry#names_and_taxonomy" } ] }, { "name": "3-hydroxyisobutyrate dehydrogenase, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_020934876", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934876" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHU0", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HIBADH", "url": "https://www.uniprot.org/uniprotkb/F1SHU0", "locus": { "chromosome": "18", "start_pos": 45208347, "end_pos": 44985425, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016695", "url": "https://www.ensembl.org/id/ENSSSCG00000016695" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016695", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016695", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516656", "url": "https://www.ncbi.nlm.nih.gov/gene/100516656", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015815", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015815", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516656", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516656", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MGKKVWH", "url": "https://omabrowser.org/oma/group/MGKKVWH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHU0", "url": "https://www.orthodb.org/?gene=F1SHU0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22981", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22981", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22981:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22981:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03446", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03446", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70895", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70895", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020934876", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934876", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17681", "url": "https://www.rhea-db.org/rhea/17681", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QKU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR28", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR28-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7T4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7T4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7T4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHU0", "url": "https://www.uniprot.org/uniprotkb/F1SHU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHU0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHU0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LUZ8", "url": "https://www.uniprot.org/uniprotkb/I3LUZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LUZ8-1", "url": "https://www.uniprot.org/uniprotkb/I3LUZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRLMCAKGYANKDFSSVFQFLREEETF", "length": 336, "header": "tr|F1SHU0-1|F1SHU0_PIG Isoform 1 of 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HIBADH PE=1 SV=5 CANONICAL=F1SHU0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QKU9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHU0/entry#A0A5G2QKU9-1", "sequence": { "sequence": "MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTRTPSLWRLHSTGGDTS", "length": 312, "header": "tr|A0A5G2QKU9-1|F1SHU0_PIG Computationally mapped isoform of 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HIBADH PE=1 SV=1 CANONICAL=F1SHU0-1" }, "locus": { "chromosome": "18", "start_pos": 45198721, "end_pos": 44985528, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070005.1", "url": "https://www.ensembl.org/id/ENSSSCT00000070005.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065459.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065459.1" } ] } }, { "isoform_ac": "A0A5G2QR28-1", "url": "https://www.uniprot.org/uniprotkb/F1SHU0/entry#A0A5G2QR28-1", "sequence": { "sequence": "MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKFQGKLKDTYFGRSPQAHSVCGPGDLAVSLPSLFQLWPCFTSQGEAAKNFVETKSYILKYPLLRNLLAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRLMCAKGYANKDFSSVFQFLREEETF", "length": 380, "header": "tr|A0A5G2QR28-1|F1SHU0_PIG Computationally mapped isoform of 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HIBADH PE=1 SV=2 CANONICAL=F1SHU0-1" }, "locus": { "chromosome": "18", "start_pos": 45101371, "end_pos": 44985528, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089419.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089419.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067199.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067199.2" } ] } }, { "isoform_ac": "A0A5G2R7T4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHU0/entry#A0A5G2R7T4-1", "sequence": { "sequence": "MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGNYF", "length": 165, "header": "tr|A0A5G2R7T4-1|F1SHU0_PIG Computationally mapped isoform of 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HIBADH PE=1 SV=1 CANONICAL=F1SHU0-1" }, "locus": { "chromosome": "18", "start_pos": 45011165, "end_pos": 44985528, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089169.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089169.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073135.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073135.1" } ] } }, { "isoform_ac": "F1SHU0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHU0/entry#F1SHU0-1", "sequence": { "sequence": "MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRLMCAKGYANKDFSSVFQFLREEETF", "length": 336, "header": "tr|F1SHU0-1|F1SHU0_PIG Isoform 1 of 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HIBADH PE=1 SV=5 CANONICAL=F1SHU0-1" }, "locus": { "chromosome": "18", "start_pos": 45101371, "end_pos": 44985528, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018176.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018176.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017685.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017685.5" } ] } }, { "isoform_ac": "I3LUZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHU0/entry#I3LUZ8-1", "sequence": { "sequence": "MAASLRLRGAASGLLYWSRRQRPAAASLVAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMISKELAKEVEKMGAVFMDAPVSGGLHGNLELK", "length": 170, "header": "tr|I3LUZ8-1|F1SHU0_PIG Computationally mapped isoform of 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=HIBADH PE=1 SV=3 CANONICAL=F1SHU0-1" }, "locus": { "chromosome": "18", "start_pos": 45020698, "end_pos": 44985528, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032570.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032570.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027950.3", "url": "https://www.ensembl.org/id/ENSSSCP00000027950.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LUZ8", "url": "https://www.uniprot.org/uniprotkb/I3LUZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516656", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516656", "resource": "KEGG Pathway" }, { "id": "R-SSC-70895", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70895", "resource": "Reactome", "description": "Branched-chain amino acid catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PH80-1", "protein_name": "3-hydroxyisobutyrate dehydrogenase", "gene_name": "HIBADH", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAAVVLGGPAGWWRWHRRVRAARAAMVCSRAMASKTPVGFIGLGNMGNPMAKNLIKHGYPVIAYDVFPEACKEFQDLGAQVTDSPADVAERADRIITMLPSSPNAIEVYTGANGILKKVKKGSLLIDSSTIDPSVSKELAKAVEKMGAVFMDAPVSGGVGAARAGNLTFMVGGMEQEFDAAKELLICMGSNVVYCGEVGTGQAAKICNNMLLAISMIGTAETMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGGFGTTLMAKDLGLAQISATNTKTPVPLGSQAHQIYRMMCAKGYALKDFSAVFQFLPHLRNMWV", "length": 335 }, "evidence": [ { "id": "F1SHU0", "url": "https://omabrowser.org/oma/group/F1SHU0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2QE64-1", "protein_name": "3-hydroxyisobutyrate dehydrogenase", "gene_name": "Hibadh", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAASLGLRGAASGLRYWSGRPRPAASLAAVCSRSMASKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDACKEFQEAGEQVASSPADVAEKADRIITMLPTSMNSVEVYSGANGILQKVKKGSLLIDSSTIDPSVSKQLAKEVEKMGAVFMDAPVSGGVGAAQSGNLTFMVGGVEDEFAAAQELLGCMGSNVIYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSTKDFSSVFQYLREEETF", "length": 335 }, "evidence": [ { "id": "F1SHU0", "url": "https://omabrowser.org/oma/group/F1SHU0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P29266-1", "protein_name": "3-hydroxyisobutyrate dehydrogenase, mitochondrial", "gene_name": "Hibadh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAASLGFRGAASGLRYWSGRRRPVGSLAAVCSRSMASKTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSVAHQIYRMMCSKGYSKKDFSSVFQYLREEETF", "length": 335 }, "evidence": [ { "id": "F1SHU0", "url": "https://omabrowser.org/oma/group/F1SHU0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P31937-1", "protein_name": "3-hydroxyisobutyrate dehydrogenase, mitochondrial", "gene_name": "HIBADH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASLRLLGAASGLRYWSRRLRPAAGSFAAVCSRSVASKTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEETF", "length": 336 }, "evidence": [ { "id": "F1SHU0", "url": "https://omabrowser.org/oma/group/F1SHU0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2HJD7-1", "protein_name": "3-hydroxyisobutyrate dehydrogenase, mitochondrial", "gene_name": "HIBADH", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAASLRLRGAASGLRYWSRRQPPAVASLAAVCSRSMASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSQAHQIYRMMCAKGYSKKDFSSVFQFLREEETF", "length": 336 }, "evidence": [ { "id": "F1SHU0", "url": "https://omabrowser.org/oma/group/F1SHU0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54CX6-1", "protein_name": "Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial", "gene_name": "hibA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSSKKSLLLFKNVRYMSTSSSKTVGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIFQTVRPGTLLLDSSTIDPATAREVASIAKKHQSTMLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKLAGIFNTSSARCWTSELYNPCPGVIETSPASRGYTGGFGSALMTKDLGLAVDSAKSIGEPLLLGNSAHQLYTLLVAKGDGQKDFSVVYDFLNKNFKNSN", "length": 321 }, "evidence": [ { "id": "F1SHU0", "url": "https://omabrowser.org/oma/group/F1SHU0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q99L13-1", "protein_name": "3-hydroxyisobutyrate dehydrogenase, mitochondrial", "gene_name": "Hibadh", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASLGFRGAASGLWYWSGRRRPVGSLAAVCSRSMASKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPILLGSLAHQIYRMMCSKGYSKKDFSSVFQYLREEEPF", "length": 335 }, "evidence": [ { "id": "F1SHU0", "url": "https://omabrowser.org/oma/group/F1SHU0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SUC0-1", "protein_name": "Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAIRRAQTLLCLSKFKTNFVSGSLHRFSSSSQNSNQFQNVGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEAGTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALALGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNLAAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYNGKDEV", "length": 347 }, "evidence": [ { "id": "F1SHU0", "url": "https://omabrowser.org/oma/group/F1SHU0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9V8M5-1", "protein_name": "3-hydroxyisobutyrate dehydrogenase, mitochondrial", "gene_name": "Hibadh", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSLRVMSPAMLNAWSQTLVRAMSTQGGAKNIGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNAIVDASYDEMTADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFIDAPVSGGVPGAEQATLTFMVGGTEAEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAISMIGVSEAMNLAVRQGLDANVFAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGFSSALITKDLGLASGVANASNSPIPLGSLAHKVYQSLCDKGLGNKDFSVVYDLMKKEKFSV", "length": 324 }, "evidence": [ { "id": "F1SHU0", "url": "https://omabrowser.org/oma/group/F1SHU0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "NAD binding", "id": "GO:0051287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051287", "evidence": [ { "database": "UniProtKB", "id": "F1SHU0", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" } ], "pmid": "" }, { "name": "3-hydroxyisobutyrate dehydrogenase activity", "id": "GO:0008442", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008442", "evidence": [ { "database": "UniProtKB", "id": "F1SHU0", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" } ], "pmid": "" }, { "name": "NADP binding", "id": "GO:0050661", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050661", "evidence": [ { "database": "UniProtKB", "id": "F1SHU0", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "L-valine catabolic process", "id": "GO:0006574", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006574", "evidence": [ { "database": "UniProtKB", "id": "F1SHU0", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" } ], "pmid": "" }, { "name": "branched-chain amino acid catabolic process", "id": "GO:0009083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009083", "evidence": [ { "database": "UniProtKB", "id": "F1SHU0", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SHU0", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17681", "name": "", "equation": "3-hydroxy-2-methylpropanoate + NAD(+) = 2-methyl-3-oxopropanoate + NADH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17681", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17681" } ] }, { "id": "R-SSC-508473", "name": "methylmalonyl semialdehyde + NADH + H+ <=> beta-hydroxyisobutyrate + NAD+", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-508473", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-508473" } ] }, { "id": "R-SSC-70885", "name": "beta-hydroxyisobutyrate + NAD+ <=> methylmalonyl semialdehyde + NADH + H+", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [ "R-ALL-573404" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-70885", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70885" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-573404", "participant_name": "bHIBA [mitochondrial matrix]", "crossref": [ { "id": "62638", "database": "ChEBI", "url": "" }, { "id": "C06001", "database": "COMPOUND", "url": "" }, { "id": "20848931", "database": "PubChem Compound", "url": "" }, { "id": "CPD-12175", "database": "AraCyc", "url": "" }, { "id": "C06001", "database": "KEGG Gene", "url": "" }, { "id": "ZINC000000895526", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" }, { "id": "PF14833", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14833" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "3-hydroxyisobutyrate dehydrogenase-like NAD-binding", "eco_id": "ECO_0000259", "start_pos": 203, "end_pos": 329, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHU0" }, { "id": "PF03446", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03446" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "6-phosphogluconate dehydrogenase NADP-binding", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 200, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 }, { "start_pos": 245, "end_pos": 247 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIU5-1", "uniprot_ac": "F1SIU5", "uniprot_id": "F1SIU5_PIG", "mass": { "chemical_mass": 24316.0, "monoisotopic_mass": 24316.0 }, "refseq": { "ac": "XP_003359740", "name": "transcription cofactor HES-6 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003359740" }, "gene_names": [ { "name": "HES6", "type": "recommended", "evidence": [ { "id": "F1SIU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ] }, { "name": "HES6", "type": "synonym", "evidence": [ { "id": "XP_003359740", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003359740" } ] } ], "protein_names": [ { "name": "Transcription cofactor HES-6", "type": "recommended", "evidence": [ { "id": "F1SIU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIU5/entry#names_and_taxonomy" } ] }, { "name": "Hairy and enhancer of split 6", "type": "synonym", "evidence": [ { "id": "F1SIU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIU5/entry#names_and_taxonomy" } ] }, { "name": "transcription cofactor HES-6 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003359740", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003359740" } ] } ], "function": [ { "annotation": "Does not bind DNA itself but suppresses both HES1-mediated N box-dependent transcriptional repression and binding of HES1 to E box sequences. Also suppresses HES1-mediated inhibition of the heterodimer formed by ASCL1/MASH1 and TCF3/E47, allowing ASCL1 and TCF3 to up-regulate transcription in its presence. Promotes cell differentiation.", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5#function" }, { "database": "UniProtKB", "id": "ARBA00055708", "url": "https://www.uniprot.org/uniprotkb/ARBA00055708#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HES6", "url": "https://www.uniprot.org/uniprotkb/F1SIU5", "locus": { "chromosome": "15", "start_pos": 137785810, "end_pos": 137787694, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016342", "url": "https://www.ensembl.org/id/ENSSSCG00000016342" } ] } } ], "crossref": [ { "id": "F1SIU5", "url": "https://alphafold.ebi.ac.uk/entry/F1SIU5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016342", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016342", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622397", "url": "https://www.ncbi.nlm.nih.gov/gene/100622397", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622397", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622397", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EDESCYG", "url": "https://omabrowser.org/oma/group/EDESCYG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIU5", "url": "https://www.orthodb.org/?gene=F1SIU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10985", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10985", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07527", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07527", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003359740", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003359740", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QR90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR90-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIU5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPLLAPGRDRAGREDEDGCEARGDRKARKPLVEKKRRARINESLQELRLLLAGAEVQAKLENAEVLELTVRRVQGALRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDATVAAELLNHLLESMPLRESSSFRDLLGDALSGPPGVHGRSNWPVGGPLGSPLPSPRGSGDDQSSDLEEAPEAELSRATVEGPELVPVALGSLTAAHMAHSVWRPW", "length": 224, "header": "tr|F1SIU5-1|F1SIU5_PIG Isoform 1 of Transcription cofactor HES-6 OS=Sus scrofa OX=9823 GN=HES6 PE=4 SV=2 CANONICAL=F1SIU5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR90-1", "url": "https://www.uniprot.org/uniprotkb/F1SIU5/entry#A0A5G2QR90-1", "sequence": { "sequence": "MAPLLAPGRDRAGREDEDGCEARGDRKVQAKLENAEVLELTVRRVQGALRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDATVAAELLNHLLESMPLRESSSFRDLLGDALSGPPGVHGRSNWPVGGPLGSPLPSPRGSGDDQSSDLEEAPEAELSRATVEGPELVPVALGSLTAAHMAHSVWRPW", "length": 195, "header": "tr|A0A5G2QR90-1|F1SIU5_PIG Computationally mapped isoform of Transcription cofactor HES-6 OS=Sus scrofa OX=9823 GN=HES6 PE=4 SV=2 CANONICAL=F1SIU5-1" }, "locus": { "chromosome": "15", "start_pos": 137787454, "end_pos": 137786391, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083311.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083311.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064561.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064561.2" } ] } }, { "isoform_ac": "F1SIU5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIU5/entry#F1SIU5-1", "sequence": { "sequence": "MAPLLAPGRDRAGREDEDGCEARGDRKARKPLVEKKRRARINESLQELRLLLAGAEVQAKLENAEVLELTVRRVQGALRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDATVAAELLNHLLESMPLRESSSFRDLLGDALSGPPGVHGRSNWPVGGPLGSPLPSPRGSGDDQSSDLEEAPEAELSRATVEGPELVPVALGSLTAAHMAHSVWRPW", "length": 224, "header": "tr|F1SIU5-1|F1SIU5_PIG Isoform 1 of Transcription cofactor HES-6 OS=Sus scrofa OX=9823 GN=HES6 PE=4 SV=2 CANONICAL=F1SIU5-1" }, "locus": { "chromosome": "15", "start_pos": 137787454, "end_pos": 137786391, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017797.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017797.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017316.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017316.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR90" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622397", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622397", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9SBB4-1", "protein_name": "Transcription cofactor HES-6", "gene_name": "HES6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPLLAPGRDRAGREDEDGCEARGDRKARKPLVEKKRRARINESLQELRLLLAGAEVQAKLENAEVLELTVRRVQGALRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDATVAAELLNHLLESMPLREGSSFRDLLGDALSAPPAAPGRSNWLVGGALESPLPSPRGSGDDQSSDLEEVPEAELSRAPPAEGTDSVPAALGSLTSARLAQSVWRPW", "length": 225 }, "evidence": [ { "id": "F1SIU5", "url": "https://omabrowser.org/oma/group/F1SIU5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q96HZ4-1", "protein_name": "Transcription cofactor HES-6", "gene_name": "HES6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPPAAPGRDRVGREDEDGWETRGDRKARKPLVEKKRRARINESLQELRLLLAGAEVQAKLENAEVLELTVRRVQGVLRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDATVAAELLNHLLESMPLREGSSFQDLLGDALAGPPRAPGRSGWPAGGAPGSPIPSPPGPGDDLCSDLEEAPEAELSQAPAEGPDLVPAALGSLTTAQIARSVWRPW", "length": 224 }, "evidence": [ { "id": "F1SIU5", "url": "https://omabrowser.org/oma/group/F1SIU5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JHE6-1", "protein_name": "Transcription cofactor HES-6", "gene_name": "Hes6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPSQAPSRDRAGQEDEDRWEARGDRKARKPLVEKKRRARINESLQELRLLLAGTEVQAKLENAEVLELTVRRVQGALRGRAREREQLQAEASERFAAGYIQCMHEVHTFVSTCQAIDATVSAELLNHLLESMPLREGSSFQDLLGDSLAGLPGGSGRSSWPPGGSPESPLSSPPGPGDDLCSDLEEIPEAELNRVPAEGPDLVSTSLGSLTAARRAQSVWRPW", "length": 224 }, "evidence": [ { "id": "F1SIU5", "url": "https://omabrowser.org/oma/group/F1SIU5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "transcription regulator inhibitor activity", "id": "GO:0140416", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140416", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "anterior/posterior pattern specification", "id": "GO:0009952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009952", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" }, { "name": "regulation of neurogenesis", "id": "GO:0050767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050767", "evidence": [ { "database": "UniProtKB", "id": "F1SIU5", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIU5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 224, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIU5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIU5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 77, "start_aa": "Asp", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIU5" }, { "id": "PS51054", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51054" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Orange", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 129, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 42, "end_pos": 44 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHX5-1", "uniprot_ac": "F1SHX5", "uniprot_id": "F1SHX5_PIG", "mass": { "chemical_mass": 63417.0, "monoisotopic_mass": 63417.0 }, "refseq": { "ac": "XP_013848847", "name": "atlastin-1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848847" }, "gene_names": [ { "name": "ATL1", "type": "recommended", "evidence": [ { "id": "F1SHX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ] }, { "name": "ATL1", "type": "synonym", "evidence": [ { "id": "XP_013848847", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848847" } ] } ], "protein_names": [ { "name": "Atlastin-1", "type": "recommended", "evidence": [ { "id": "F1SHX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHX5/entry#names_and_taxonomy" } ] }, { "name": "atlastin-1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013848847", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848847" } ] } ], "function": [ { "annotation": "Atlastin-1 (ATL1) is a membrane-anchored GTPase that mediates the GTP-dependent fusion of endoplasmic reticulum (ER) membranes, maintaining the continuous ER network. It facilitates the formation of three-way junctions where ER tubules intersect. Two atlastin-1 on neighboring ER tubules bind GTP and form loose homodimers through the GB1/RHD3-type G domains and 3HB regions. Upon GTP hydrolysis, the 3HB regions tighten, pulling the membranes together to drive their fusion. After fusion, the homodimer disassembles upon release of inorganic phosphate (Pi). Subsequently, GDP dissociates, resetting the monomers to a conformation ready for a new fusion cycle. May also regulate more or less directly Golgi biogenesis. Indirectly regulates axonal development.", "evidence": [ { "database": "UniProtKB", "id": "F1SHX6", "url": "https://www.uniprot.org/uniprotkb/F1SHX6#function" }, { "database": "UniProtKB", "id": "ARBA00093355", "url": "https://www.uniprot.org/uniprotkb/ARBA00093355#function" }, { "database": "UniProtKB", "id": "A0A5G2QSP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSP4#function" }, { "database": "UniProtKB", "id": "A0A5G2RHK8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RHK8#function" }, { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATL1", "url": "https://www.uniprot.org/uniprotkb/F1SHX5", "locus": { "chromosome": "1", "start_pos": 180405837, "end_pos": 180299256, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005020", "url": "https://www.ensembl.org/id/ENSSSCG00000005020" } ] } } ], "crossref": [ { "id": "F1SHX5", "url": "https://alphafold.ebi.ac.uk/entry/F1SHX5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005020", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005020", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100158193", "url": "https://www.ncbi.nlm.nih.gov/gene/100158193", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030386", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030386", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158193", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158193", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GFIHNIW", "url": "https://omabrowser.org/oma/group/GFIHNIW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHX5", "url": "https://www.orthodb.org/?gene=F1SHX5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SHX6", "url": "https://www.orthodb.org/?gene=F1SHX6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02263", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02263", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013848847", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848847", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QSP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RHK8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RHK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RHK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RHK8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHX5-1", "url": "https://www.uniprot.org/uniprotkb/F1SHX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHX6", "url": "https://www.uniprot.org/uniprotkb/F1SHX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHX6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKSRKDRNSWGGFSEKGYEWSSEEEESVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLELKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQGSTNEALYKLYSAAATHRHLYHQAFPAPKSESTEQSEKKKI", "length": 558, "header": "tr|F1SHX5-1|F1SHX5_PIG Isoform 1 of Atlastin-1 OS=Sus scrofa OX=9823 GN=ATL1 PE=1 SV=3 CANONICAL=F1SHX5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHX5/entry#A0A5G2QSP4-1", "sequence": { "sequence": "VKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLELKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQVGALYKLYSAAATHRHLYHQAFPAPKSESTEQSEKKKI", "length": 527, "header": "tr|A0A5G2QSP4-1|F1SHX5_PIG Computationally mapped isoform of Atlastin-1 OS=Sus scrofa OX=9823 GN=ATL1 PE=1 SV=2 CANONICAL=F1SHX5-1" }, "locus": { "chromosome": "1", "start_pos": 180404833, "end_pos": 180354490, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090817.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090817.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065022.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065022.2" } ] } }, { "isoform_ac": "A0A5G2RHK8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHX5/entry#A0A5G2RHK8-1", "sequence": { "sequence": "GHKKKKKKNQYVILSGFSEKGYEWSSEEEESVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLELKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQALYKLYSAAATHRHLYHQAFPAPKSESTEQSEKKKI", "length": 556, "header": "tr|A0A5G2RHK8-1|F1SHX5_PIG Computationally mapped isoform of Atlastin-1 OS=Sus scrofa OX=9823 GN=ATL1 PE=1 SV=1 CANONICAL=F1SHX5-1" }, "locus": { "chromosome": "1", "start_pos": 180404833, "end_pos": 180353973, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089833.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089833.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070861.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070861.1" } ] } }, { "isoform_ac": "F1SHX5-1", "url": "https://www.uniprot.org/uniprotkb/F1SHX5/entry#F1SHX5-1", "sequence": { "sequence": "MAKSRKDRNSWGGFSEKGYEWSSEEEESVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLELKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQGSTNEALYKLYSAAATHRHLYHQAFPAPKSESTEQSEKKKI", "length": 558, "header": "tr|F1SHX5-1|F1SHX5_PIG Isoform 1 of Atlastin-1 OS=Sus scrofa OX=9823 GN=ATL1 PE=1 SV=3 CANONICAL=F1SHX5-1" }, "locus": { "chromosome": "1", "start_pos": 180404833, "end_pos": 180316665, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005536.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005536.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005398.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005398.4" } ] } }, { "isoform_ac": "F1SHX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHX5/entry#F1SHX6-1", "sequence": { "sequence": "MAKSRKDRNSWGGFSEKGYEWSSEEEESVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDEEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLELKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQALYKLYSAAATHRHLYHQAFPAPKSESTEQSEKKKI", "length": 553, "header": "tr|F1SHX6-1|F1SHX6_PIG Computationally mapped isoform of Atlastin-1 OS=Sus scrofa OX=9823 GN=ATL1 PE=1 SV=4 CANONICAL=F1SHX5-1" }, "locus": { "chromosome": "1", "start_pos": 180404833, "end_pos": 180316665, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005535.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005535.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005397.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005397.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSP4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSP4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158193", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158193", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1RNI5-1", "protein_name": "Atlastin-1", "gene_name": "ATL1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MARNRRERSSWGSFADKAYEWSSEEEESVRKAGPVQVLIVKDDHSFELDEAALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNKEAVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLVDKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGSDGGARFLEKRLKVSGNQHEELQNVRKHIHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDVKEINGNHITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYSRRMEEVCGGDKPFLAPSDLQTKHVELKDEAVRLFRGVKKMGGEEFSRRYLQQLENEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQGSTNEALYKLYSAAATHRHLYHHAFPAQKAEPAEGPDRKKM", "length": 558 }, "evidence": [ { "id": "F1SHX5", "url": "https://omabrowser.org/oma/group/F1SHX5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9QGX9-1", "protein_name": "Atlastin-1", "gene_name": "atl1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARDKKDRDSWGSFVDKNVYDWSSEEEEADGRARPVQVLVVKDDHTFELDEAALSKILLSEEVRDREVVAISVAGAFRKGKSFLMDFMLRYMYSQASEKWLGDAEEPLTGFSWRGGSERETTGIQIWSEVFLVDKPDGSKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSMQVYNISQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFPYGQEGGMKFLEKRLKISENQHEELQNVRKHIHSCFTNISCFLMPHPGLKVATNPHFDGRLREIDQEFINNLQVLVPCLLRPKNLDVKEINGSKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVAGAKDLYNRKMEVVSGGDRPFLAPSELQARHLEIREEALALFRSVKKMGGEEFSRRYLLQLETEIDELFVQYIKHNDSKNIFHAARTPATLFVVIFVMYVAAGITGFVGVDVIASVCNMVLGFALITLCTWAYIRYSGEYRELGAVIDQVAGALWDQGNTNEALYKLYSVAANHRQLYNHAFPGHQSDQQPEQDKKRN", "length": 559 }, "evidence": [ { "id": "F1SHX5", "url": "https://omabrowser.org/oma/group/F1SHX5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q58D72-1", "protein_name": "Atlastin-1", "gene_name": "ATL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKNRRDRNSWGGFSEKTYEWSSEEEEPVKKAGPVQVLVVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDHNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGSDGGSKFLEKRLKVSGNQHEELQNVRKHIHSCFTKISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLELKEESVKLFRGVKKMGGEEFSRRYLQQLETEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQGSTNEALYKLYSAAATHRHLYHQAFPAPKSESTEQSEKKKM", "length": 558 }, "evidence": [ { "id": "F1SHX5", "url": "https://omabrowser.org/oma/group/F1SHX5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PST4-1", "protein_name": "Atlastin-1", "gene_name": "Atl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKSRRDRNSWGGFSEKSSDWSSEEEEPVRKAGPVQVLIVKDDHSFELDEAALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKLDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLLEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEDSVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQGSTNEALYKLYSAAATHRHLYQQAFPAPKSEPTEQPEKKKI", "length": 558 }, "evidence": [ { "id": "F1SHX5", "url": "https://omabrowser.org/oma/group/F1SHX5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BH66-1", "protein_name": "Atlastin-1", "gene_name": "Atl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKSRRDRNSWGGFSEKSSDWSSEEEEPVRKAGPVQVLIVKDDHSFELDEAALNRILLSQAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEVFLINKLDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPERLDIKEINGNKITCRGLLEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEVCGGDKPFLAPNDLQSKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQGSTNEALYKLYSAAATHRHLCHQAFPAPKSEPTQQPEKKKI", "length": 558 }, "evidence": [ { "id": "F1SHX5", "url": "https://omabrowser.org/oma/group/F1SHX5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WXF7-1", "protein_name": "Atlastin-1", "gene_name": "ATL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKNRRDRNSWGGFSEKTYEWSSEEEEPVKKAGPVQVLIVKDDHSFELDETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNLSQNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVSGNQHEELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFDGKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNKITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESVKLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSKNIFHAARTPATLFVVIFITYVIAGVTGFIGLDIIASLCNMIMGLTLITLCTWAYIRYSGEYRELGAVIDQVAAALWDQGSTNEALYKLYSAAATHRHLYHQAFPTPKSESTEQSEKKKM", "length": 558 }, "evidence": [ { "id": "F1SHX5", "url": "https://omabrowser.org/oma/group/F1SHX5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VC57-1", "protein_name": "Atlastin", "gene_name": "atl", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGGSAVQVINASEEHTFVLNEDALSEVLMRDEVKDRFVCVVSVAGAFRKGKSFLLDFFLRYMYSKYVHHDATDWLGGESDPLEGFSWRGGSERDTTGILMWSDIFLHDYPNGDKIAIILLDTQGAFDSQSTVRDCATVFALSTMLSSVQIYNLSQNIQEDDLQHLQLFTEYGRLALADTGKKPFQRLQFLVRDWSFPYEAEYGALGGDKILKRRLEVSDKQHPELQSLRRHISSCFTEVACFLMPHPGLNVATNPKFDGRLQDITPEFKSSLRSLVPMLLAPDNLVYKEISGQRVRARDLIQYFQSYMNIYKGNELPEPKSMLVATAEANHLTAVAAAKELYGQLMEEVCGGTRPYLSTAHLQTEHLRVKDKALFQFAAKRKMGGEEFTEKFRKQLEDDLEEVFTNYQAHNESKNIFKAARTPAVYFACAVIMYILSGIFGLVGLYTFANFCNLVMGVALLTLALWAYIRYSGELSDFGGKLDDFATLLWEKFMRPIYHGCMEKGIHHVATHATEMAVGGGAASYRSQTSVNASNGKVKRS", "length": 541 }, "evidence": [ { "id": "F1SHX5", "url": "https://omabrowser.org/oma/group/F1SHX5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" }, { "name": "endoplasmic reticulum tubular network membrane", "id": "GO:0098826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098826", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" }, { "name": "GTPase-dependent fusogenic activity", "id": "GO:0140523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140523", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" }, { "name": "endoplasmic reticulum tubular network membrane organization", "id": "GO:1990809", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990809", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" }, { "name": "endoplasmic reticulum organization", "id": "GO:0007029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007029", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane fusion", "id": "GO:0016320", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016320", "evidence": [ { "database": "UniProtKB", "id": "F1SHX5", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHX5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 558, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHX5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHX5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHX5" }, { "id": "PS51715", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51715" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GB1/RHD3-type G", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 309, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 177, "end_pos": 179 }, { "start_pos": 436, "end_pos": 438 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK22-1", "uniprot_ac": "F1SK22", "uniprot_id": "F1SK22_PIG", "mass": { "chemical_mass": 151636.0, "monoisotopic_mass": 151636.0 }, "refseq": { "ac": "XP_020954619", "name": "kinesin-like protein KIF7 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954619" }, "gene_names": [ { "name": "KIF7", "type": "recommended", "evidence": [ { "id": "F1SK22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ] }, { "name": "KIF7", "type": "synonym", "evidence": [ { "id": "XP_020954619", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954619" } ] } ], "protein_names": [ { "name": "Kinesin family member 7", "type": "synonym", "evidence": [ { "id": "F1SK22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK22/entry#names_and_taxonomy" } ] }, { "name": "kinesin-like protein KIF7 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020954619", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954619" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KIF7", "url": "https://www.uniprot.org/uniprotkb/F1SK22", "locus": { "chromosome": "7", "start_pos": 55200594, "end_pos": 55220240, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001840", "url": "https://www.ensembl.org/id/ENSSSCG00000001840" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001840", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001840", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01372", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01372", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100624604", "url": "https://www.ncbi.nlm.nih.gov/gene/100624604", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027640", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027640", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624604", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624604", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SK22", "url": "https://www.orthodb.org/?gene=F1SK22", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47969", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47969", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47969:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47969:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25764", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25764", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5610787", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610787", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5632684", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020954619", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954619", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QTW3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTW3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK22-1", "url": "https://www.uniprot.org/uniprotkb/F1SK22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLEAQRLPAAEKAPVRVALRVRPLLPKELLHGHQSCLRVEPGHGGVTLGRDRHFGFHVVLDEDAGQETVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGETSVASLHEDEQGIIPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDDRGNVVVCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNRLSSRSHTVFTVTLEQRGRAPSRLPRPPAGQLLISKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRSSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQNICNRATINWQLEAERAPEEAAAAVLARGPPKHRSETRIIHRGRRAPGPAAASAAATARLGAECARYRARTDAAYSLLRELQAEPGLPGAAARKVRDWLCAVEGERSALSSASGPDSGIESASAEEQATQGPGGQKEDEGGLQLLALQSQVAQLEEENRDFLAALEDAMEQYKLQSDRLREQQEEMAELRLRLELVRPGWGAPGLLQGLPPGSFVPRPHTAPLGGANTHVLGMVPPGCLPGDGAGPENWGEMTDARESGTRFLEVGDRLGSGSSAASSEEEEEEEEGGGAGEELEPLRRTLHLRRNGIGKRSQRMGACSGNPLGRKDPELRLGELGTAILGPRVVGGSKTPAWPPQAPAATASEWRLAQAQQKIRELAINIRMKEELIGELVRTGKAAQALNRQHSQRIRELEQEAERVRAELSEGQRQLRELESKEPQDAGSRSQLQEFRKRVAAAQSQVQVLKEKKQVTERLVSLSAQSEKRLQELERNVQLMRQQQGQLQRRLREETEQKRRLETEMNKRQHRVKELELKHEQQQKILKIKTEEIAAFQRKRRSGSNGSVVSLEQQQKIEEQKKWLDQEMEKVLQQRRALEELGEELRKREAILAKKEALMQEKTGLESKRLRSSQALSEDIVRVSSRLEHLEKELTEKSEQLRQGSAQSQQQIRREIDALRQEKDSLLKQRLEIDGKLRQGNVLSPEEERTLFQLDEAIEALDAAIEYKNEAITCRQRVLRASASLLSQCEMNLMAKLSYLSSSETRALLCKYFDKVVTLREEQHQQQIAFSELEMQLEEQQRLVYWLEVALERQRLEMDRQLTLQQKEHEQNMQLLLQQSRDHLGEGFADSKRQYETRIQALEKELGRHVWLNQELKQQLSSLDTGGQGRVTGGEKRTLCLDNRQAPANEDGPHAAPEPLWQSPLVEGAPRAREEIRDLVHAPLPLTWKRSSLCSEEQGSPEELRQREATEPLVGRVLAVGEVGPPWNLGSLPKPRRELRRASPGMIDVRKNPL", "length": 1356, "header": "tr|F1SK22-1|F1SK22_PIG Isoform 1 of Kinesin family member 7 OS=Sus scrofa OX=9823 GN=KIF7 PE=3 SV=3 CANONICAL=F1SK22-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTW3-1", "url": "https://www.uniprot.org/uniprotkb/F1SK22/entry#A0A5G2QTW3-1", "sequence": { "sequence": "MVVGGPVVSPPASLHEDEQGIIPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDDRGNVVVCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNRLSSRSHTVFTVTLEQRGRAPSRLPRPPAGQLLISKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRSSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQNICNRATINWQLEAERAPEEAAAAVLARGPPKHRSETRIIHRGRRAPGPAAASAAATARLGAECARYRARTDAAYSLLRELQAEPGLPGAAARKVRDWLCAVEGERSALSSASGPDSGIESASAEEQATQGPGGQKEDEGGLQLLALQSQVAQLEEENRDFLAALEDAMEQYKLQSDRLREQQEEMAELRLRLELVRPGWGAPGLLQGLPPGSFVPRPHTAPLGGANTHVLGMVPPGCLPGDGAGPENWGEMTDARESGTRFLEVGDRLGSGSSAASSEEEEEEEEGGGAGEELEPLRRTLHLRRNGIGKRSQRMGACSGNPLGRKDPELRLGELGTAILGPRVVGGSKTPAWPPQAPAATASEWRLAQAQQKIRELAINIRMKEELIGELVRTGKAAQALNRQHSQRIRELEQEAERVRAELSEGQRQLRELESKEPQDAGSRSQLQEFRKRVAAAQSQVQVLKEKKQVTERLVSLSAQSEKRLQELERNVQLMRQQQGQLQRRLREETEQKRRLETEMNKRQHRVKELELKHEQQQKILKIKTEEIAAFQRKRRSGSNGSVVSLEQQQKIEEQKKWLDQEMEKVLQQRRALEELGEELRKREAILAKKEALMQEKTGLESKRLRSSQALSEDIVRVSSRLEHLEKELTEKSEQLRQGSAQSQQQIRREIDALRQEKDSLLKQRLEIDGKLRQGNVLSPEEERTLFQLDEAIEALDAAIEYKNEAITCRQRVLRASASLLSQCEMNLMAKLSYLSSSETRALLCKYFDKVVTLREEQHQQQIAFSELEMQLEEQQRLVYWLEVALERQRLEMDRQLTLQQKEHEQNMQLLLQQSRDHLGEGFADSKRQYETRIQALEKELGRHVWLNQELKQQLSSLDTGGQGRVTGGEKRTLCLDNRQAPANEDGPHAAPEPLWQSPLVEGAPRAREEIRDLVHAPLPLTWKRSSLCSEEQGSPEELRQREATEPLVGRVLAVGEVGPPWNLGSLPKPRRELRRASPGMIDVRKNPL", "length": 1258, "header": "tr|A0A5G2QTW3-1|F1SK22_PIG Computationally mapped isoform of Kinesin family member 7 OS=Sus scrofa OX=9823 GN=KIF7 PE=3 SV=1 CANONICAL=F1SK22-1" }, "locus": { "chromosome": "7", "start_pos": 55215756, "end_pos": 55201016, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079300.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079300.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068288.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068288.1" } ] } }, { "isoform_ac": "F1SK22-1", "url": "https://www.uniprot.org/uniprotkb/F1SK22/entry#F1SK22-1", "sequence": { "sequence": "MGLEAQRLPAAEKAPVRVALRVRPLLPKELLHGHQSCLRVEPGHGGVTLGRDRHFGFHVVLDEDAGQETVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGETSVASLHEDEQGIIPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDDRGNVVVCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNRLSSRSHTVFTVTLEQRGRAPSRLPRPPAGQLLISKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRSSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQNICNRATINWQLEAERAPEEAAAAVLARGPPKHRSETRIIHRGRRAPGPAAASAAATARLGAECARYRARTDAAYSLLRELQAEPGLPGAAARKVRDWLCAVEGERSALSSASGPDSGIESASAEEQATQGPGGQKEDEGGLQLLALQSQVAQLEEENRDFLAALEDAMEQYKLQSDRLREQQEEMAELRLRLELVRPGWGAPGLLQGLPPGSFVPRPHTAPLGGANTHVLGMVPPGCLPGDGAGPENWGEMTDARESGTRFLEVGDRLGSGSSAASSEEEEEEEEGGGAGEELEPLRRTLHLRRNGIGKRSQRMGACSGNPLGRKDPELRLGELGTAILGPRVVGGSKTPAWPPQAPAATASEWRLAQAQQKIRELAINIRMKEELIGELVRTGKAAQALNRQHSQRIRELEQEAERVRAELSEGQRQLRELESKEPQDAGSRSQLQEFRKRVAAAQSQVQVLKEKKQVTERLVSLSAQSEKRLQELERNVQLMRQQQGQLQRRLREETEQKRRLETEMNKRQHRVKELELKHEQQQKILKIKTEEIAAFQRKRRSGSNGSVVSLEQQQKIEEQKKWLDQEMEKVLQQRRALEELGEELRKREAILAKKEALMQEKTGLESKRLRSSQALSEDIVRVSSRLEHLEKELTEKSEQLRQGSAQSQQQIRREIDALRQEKDSLLKQRLEIDGKLRQGNVLSPEEERTLFQLDEAIEALDAAIEYKNEAITCRQRVLRASASLLSQCEMNLMAKLSYLSSSETRALLCKYFDKVVTLREEQHQQQIAFSELEMQLEEQQRLVYWLEVALERQRLEMDRQLTLQQKEHEQNMQLLLQQSRDHLGEGFADSKRQYETRIQALEKELGRHVWLNQELKQQLSSLDTGGQGRVTGGEKRTLCLDNRQAPANEDGPHAAPEPLWQSPLVEGAPRAREEIRDLVHAPLPLTWKRSSLCSEEQGSPEELRQREATEPLVGRVLAVGEVGPPWNLGSLPKPRRELRRASPGMIDVRKNPL", "length": 1356, "header": "tr|F1SK22-1|F1SK22_PIG Isoform 1 of Kinesin family member 7 OS=Sus scrofa OX=9823 GN=KIF7 PE=3 SV=3 CANONICAL=F1SK22-1" }, "locus": { "chromosome": "7", "start_pos": 55217795, "end_pos": 55201016, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002062.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002062.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002013.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002013.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTW3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTW3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624604", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624604", "resource": "KEGG Pathway" }, { "id": "R-SSC-5610787", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610787", "resource": "Reactome", "description": "Hedgehog 'off' state" }, { "id": "R-SSC-5632684", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "resource": "Reactome", "description": "Hedgehog 'on' state" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" }, { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" }, { "name": "microtubule motor activity", "id": "GO:0003777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003777", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" }, { "name": "kinesin complex", "id": "GO:0005871", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005871", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" }, { "name": "ciliary tip", "id": "GO:0097542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097542", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule-based movement", "id": "GO:0007018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007018", "evidence": [ { "database": "UniProtKB", "id": "F1SK22", "url": "https://www.uniprot.org/uniprotkb/F1SK22" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" }, { "start_pos": 907, "end_pos": 909, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK22" }, { "id": "PS50067", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50067" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kinesin motor", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 349, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 276, "end_pos": 278 }, { "start_pos": 87, "end_pos": 89 }, { "start_pos": 907, "end_pos": 909 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK95-1", "uniprot_ac": "F1SK95", "uniprot_id": "F1SK95_PIG", "mass": { "chemical_mass": 49286.0, "monoisotopic_mass": 49286.0 }, "refseq": {}, "gene_names": [ { "name": "CPOX", "type": "recommended", "evidence": [ { "id": "F1SK95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ] } ], "protein_names": [ { "name": "Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SK95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK95/entry#names_and_taxonomy" } ] }, { "name": "1.3.3.3", "type": "synonym", "evidence": [ { "id": "F1SK95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK95/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CPOX", "url": "https://www.uniprot.org/uniprotkb/F1SK95", "locus": { "chromosome": "13", "start_pos": 160348232, "end_pos": 160332436, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011978", "url": "https://www.ensembl.org/id/ENSSSCG00000011978" } ] } } ], "crossref": [ { "id": "F1SK95", "url": "https://alphafold.ebi.ac.uk/entry/F1SK95", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011978", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011978", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001260", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001260", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018375", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018375", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036406", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036406", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10755", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10755", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10755:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10755:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01218", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01218", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-189451", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189451", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "18257", "url": "https://www.rhea-db.org/rhea/18257", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QTZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK95-1", "url": "https://www.uniprot.org/uniprotkb/F1SK95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "GAMHLGGLSAGPCWRAARAGCGELSAWSRRYAVGRLCRPPGTTCPQQSRGLGHGPTTGGSPRLRTGVAAGLAGLAGLAAAAFGQVERAEMVRKSSGTPSTLPGKPEEDDDELARRCSCFMAPPVTDLSELRTRPEDMKTKMELLILETQAQVCQALAQVDGGARFSVDRWERKEGGGGISCVLQDGHVFEKAGVSISVVHGNLSEEAAKQMRSRGKMLKTKDGKLPFSAMGVSSVIHPKNPHAPTIHFNYRYFEIEEADGNKQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKYKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCTQAIIPSYIPLVKKHCNDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEILEVLRHPRDWVH", "length": 443, "header": "tr|F1SK95-1|F1SK95_PIG Isoform 1 of Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Sus scrofa OX=9823 GN=CPOX PE=1 SV=3 CANONICAL=F1SK95-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SK95/entry#A0A5G2QTZ2-1", "sequence": { "sequence": "MHLGGLSAGPCWRAARAGCGELSAWSRRYAVGRLCRPPGTTCPQQSRGLGHGPTTGGSPRLRTGVAAGLAGLAGLAAAAFGQVERAEMVRKSSGTPSTLPGKPEEDDDELARRCSCFMAPPVTDLSELRTRPEDMKTKMELLILETQAQVCQALAQVDGGARFSVDRWERKEGGGGISCVLQDGHVFEKAGVSISVVHGNLSEEAAKQMRSRGKMLKTKDGKLPFSAMGVSSVIHPKNPHAPTIHFNYRYFEIEEADGNKQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKYKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEILEVLRHPRDWVH", "length": 410, "header": "tr|A0A5G2QTZ2-1|F1SK95_PIG Computationally mapped isoform of Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Sus scrofa OX=9823 GN=CPOX PE=1 SV=1 CANONICAL=F1SK95-1" }, "locus": { "chromosome": "13", "start_pos": 160344593, "end_pos": 160332524, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082814.1", "url": "https://www.ensembl.org/id/ENSSSCT00000082814.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068411.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068411.1" } ] } }, { "isoform_ac": "F1SK95-1", "url": "https://www.uniprot.org/uniprotkb/F1SK95/entry#F1SK95-1", "sequence": { "sequence": "GAMHLGGLSAGPCWRAARAGCGELSAWSRRYAVGRLCRPPGTTCPQQSRGLGHGPTTGGSPRLRTGVAAGLAGLAGLAAAAFGQVERAEMVRKSSGTPSTLPGKPEEDDDELARRCSCFMAPPVTDLSELRTRPEDMKTKMELLILETQAQVCQALAQVDGGARFSVDRWERKEGGGGISCVLQDGHVFEKAGVSISVVHGNLSEEAAKQMRSRGKMLKTKDGKLPFSAMGVSSVIHPKNPHAPTIHFNYRYFEIEEADGNKQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKYKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCTQAIIPSYIPLVKKHCNDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMHSPSENSKEAEILEVLRHPRDWVH", "length": 443, "header": "tr|F1SK95-1|F1SK95_PIG Isoform 1 of Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial OS=Sus scrofa OX=9823 GN=CPOX PE=1 SV=3 CANONICAL=F1SK95-1" }, "locus": { "chromosome": "13", "start_pos": 160344593, "end_pos": 160332518, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013107.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013107.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012762.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012762.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 56, "start_aa": "Thr", "end_pos": 56, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr56", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 97, "start_aa": "Thr", "end_pos": 97, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr97", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QTZ2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-189451", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189451", "resource": "Reactome", "description": "Heme biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protoporphyrinogen IX biosynthetic process", "id": "GO:0006782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006782", "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "pmid": "" }, { "name": "heme A biosynthetic process", "id": "GO:0006784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006784", "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "pmid": "" }, { "name": "heme B biosynthetic process", "id": "GO:0006785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006785", "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "coproporphyrinogen oxidase activity", "id": "GO:0004109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004109", "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "pmid": "" }, { "name": "structural constituent of eye lens", "id": "GO:0005212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005212", "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "pmid": "" }, { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SK95", "url": "https://www.uniprot.org/uniprotkb/F1SK95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "18257", "name": "", "equation": "coproporphyrinogen III + O2 + 2 H(+) = protoporphyrinogen IX + 2 CO2 + 2 H2O", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "18257", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/18257" } ] }, { "id": "R-SSC-189421", "name": "CPO transforms COPRO3 to PPGEN9", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial intermembrane space", "input_participant_list": [ "R-ALL-189411" ], "output_participant_list": [ "R-ALL-189480" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-189421", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189421" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-189411", "participant_name": "COPRO3 [mitochondrial intermembrane space]", "crossref": [ { "id": "57309", "database": "ChEBI", "url": "" }, { "id": "ZINC000004096059", "database": "ZINC", "url": "" }, { "id": "C03263", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-189480", "participant_name": "CO2 [mitochondrial intermembrane space]", "crossref": [ { "id": "HMDB0001967", "database": "HMDB Metabolite", "url": "" }, { "id": "C00011", "database": "COMPOUND", "url": "" }, { "id": "16526", "database": "ChEBI", "url": "" }, { "id": "11533283", "database": "PubChem Substance", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SK95-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 443, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SK95-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SK95" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 56, 97 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 202, "end_pos": 204 }, { "start_pos": 363, "end_pos": 365 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMW9-1", "uniprot_ac": "F1SMW9", "uniprot_id": "F1SMW9_PIG", "mass": { "chemical_mass": 105753.0, "monoisotopic_mass": 105753.0 }, "refseq": {}, "gene_names": [ { "name": "PSMD1", "type": "recommended", "evidence": [ { "id": "F1SMW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" } ] } ], "protein_names": [ { "name": "26S proteasome non-ATPase regulatory subunit 1", "type": "recommended", "evidence": [ { "id": "F1SMW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUG8#function" }, { "database": "UniProtKB", "id": "ARBA00002362", "url": "https://www.uniprot.org/uniprotkb/ARBA00002362#function" }, { "database": "UniProtKB", "id": "PIRNR015947", "url": "https://www.uniprot.org/uniprotkb/PIRNR015947#function" }, { "database": "UniProtKB", "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMD1", "url": "https://www.uniprot.org/uniprotkb/F1SMW9", "locus": { "chromosome": "15", "start_pos": 131912866, "end_pos": 131807630, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016272", "url": "https://www.ensembl.org/id/ENSSSCG00000016272" } ] } } ], "crossref": [ { "id": "F1SMW9", "url": "https://alphafold.ebi.ac.uk/entry/F1SMW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016272", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016272", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002015", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002015", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048570", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048570", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10943", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10943", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10943:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10943:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01851", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01851", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169091", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1234176", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1236978", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174084", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174154", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174184", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-187577", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-349425", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-350562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-382556", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4608870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641258", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5358346", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607761", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607764", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610780", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610785", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5632684", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5658442", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5668541", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5676590", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5687128", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68867", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68949", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69017", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69601", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75815", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8852276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854050", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939902", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8941858", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948751", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9020702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9755511", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9766229", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9907900", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9931269", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9932298", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QUG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LCLIAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETEEKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMPETCRYQPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD", "length": 952, "header": "tr|F1SMW9-1|F1SMW9_PIG Isoform 1 of 26S proteasome non-ATPase regulatory subunit 1 OS=Sus scrofa OX=9823 GN=PSMD1 PE=3 SV=4 CANONICAL=F1SMW9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW9/entry#A0A5G2QUG8-1", "sequence": { "sequence": "MITSAAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETEEKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMPETCRYQPFKPDLCSSEDFTALYWKCL", "length": 917, "header": "tr|A0A5G2QUG8-1|F1SMW9_PIG Computationally mapped isoform of 26S proteasome non-ATPase regulatory subunit 1 OS=Sus scrofa OX=9823 GN=PSMD1 PE=3 SV=2 CANONICAL=F1SMW9-1" }, "locus": { "chromosome": "15", "start_pos": 131912033, "end_pos": 131807765, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073821.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073821.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068478.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068478.2" } ] } }, { "isoform_ac": "F1SMW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW9/entry#F1SMW9-1", "sequence": { "sequence": "LCLIAGIISLLDEEEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSESMETEEKTGSVLVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAKKKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLSMPETCRYQPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD", "length": 952, "header": "tr|F1SMW9-1|F1SMW9_PIG Isoform 1 of 26S proteasome non-ATPase regulatory subunit 1 OS=Sus scrofa OX=9823 GN=PSMD1 PE=3 SV=4 CANONICAL=F1SMW9-1" }, "locus": { "chromosome": "15", "start_pos": 131910198, "end_pos": 131812733, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017720.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017720.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017239.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017239.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUG8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUG8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1169091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "resource": "Reactome", "description": "Activation of NF-kappaB in B cells" }, { "id": "R-SSC-1234176", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "resource": "Reactome", "description": "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha" }, { "id": "R-SSC-1236978", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "resource": "Reactome", "description": "Cross-presentation of soluble exogenous antigens (endosomes)" }, { "id": "R-SSC-174084", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "resource": "Reactome", "description": "Autodegradation of Cdh1 by Cdh1:APC/C" }, { "id": "R-SSC-174154", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of Securin" }, { "id": "R-SSC-174178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "resource": "Reactome", "description": "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1" }, { "id": "R-SSC-174184", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "resource": "Reactome", "description": "Cdc20:Phospho-APC/C mediated degradation of Cyclin A" }, { "id": "R-SSC-187577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "resource": "Reactome", "description": "SCF(Skp2)-mediated degradation of p27/p21" }, { "id": "R-SSC-202424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "resource": "Reactome", "description": "Downstream TCR signaling" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-349425", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "resource": "Reactome", "description": "Autodegradation of the E3 ubiquitin ligase COP1" }, { "id": "R-SSC-350562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "resource": "Reactome", "description": "Regulation of ornithine decarboxylase (ODC)" }, { "id": "R-SSC-382556", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "resource": "Reactome", "description": "ABC-family protein mediated transport" }, { "id": "R-SSC-450408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "resource": "Reactome", "description": "AUF1 (hnRNP D0) binds and destabilizes mRNA" }, { "id": "R-SSC-4608870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "resource": "Reactome", "description": "Asymmetric localization of PCP proteins" }, { "id": "R-SSC-4641257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "resource": "Reactome", "description": "Degradation of AXIN" }, { "id": "R-SSC-4641258", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "resource": "Reactome", "description": "Degradation of DVL" }, { "id": "R-SSC-5358346", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "resource": "Reactome", "description": "Hedgehog ligand biogenesis" }, { "id": "R-SSC-5607761", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "resource": "Reactome", "description": "Dectin-1 mediated noncanonical NF-kB signaling" }, { "id": "R-SSC-5607764", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "resource": "Reactome", "description": "CLEC7A (Dectin-1) signaling" }, { "id": "R-SSC-5610780", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "resource": "Reactome", "description": "Degradation of GLI1 by the proteasome" }, { "id": "R-SSC-5610785", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "resource": "Reactome", "description": "GLI3 is processed to GLI3R by the proteasome" }, { "id": "R-SSC-5632684", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "resource": "Reactome", "description": "Hedgehog 'on' state" }, { "id": "R-SSC-5658442", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "resource": "Reactome", "description": "Regulation of RAS by GAPs" }, { "id": "R-SSC-5668541", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "resource": "Reactome", "description": "TNFR2 non-canonical NF-kB pathway" }, { "id": "R-SSC-5676590", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "resource": "Reactome", "description": "NIK-->noncanonical NF-kB signaling" }, { "id": "R-SSC-5687128", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "resource": "Reactome", "description": "MAPK6/MAPK4 signaling" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-68867", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "resource": "Reactome", "description": "Assembly of the pre-replicative complex" }, { "id": "R-SSC-68949", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "resource": "Reactome", "description": "Orc1 removal from chromatin" }, { "id": "R-SSC-69017", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "resource": "Reactome", "description": "CDK-mediated phosphorylation and removal of Cdc6" }, { "id": "R-SSC-69481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "resource": "Reactome", "description": "G2/M Checkpoints" }, { "id": "R-SSC-69601", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "resource": "Reactome", "description": "Ubiquitin-Mediated Degradation of Phosphorylated Cdc25A" }, { "id": "R-SSC-75815", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "resource": "Reactome", "description": "Ubiquitin-dependent degradation of Cyclin D" }, { "id": "R-SSC-8852276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "resource": "Reactome", "description": "The role of GTSE1 in G2/M progression after G2 checkpoint" }, { "id": "R-SSC-8854050", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "resource": "Reactome", "description": "FBXL7 down-regulates AURKA during mitotic entry and in early mitosis" }, { "id": "R-SSC-8939236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "resource": "Reactome", "description": "RUNX1 regulates transcription of genes involved in differentiation of HSCs" }, { "id": "R-SSC-8939902", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "resource": "Reactome", "description": "Regulation of RUNX2 expression and activity" }, { "id": "R-SSC-8941858", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "resource": "Reactome", "description": "Regulation of RUNX3 expression and activity" }, { "id": "R-SSC-8948751", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "resource": "Reactome", "description": "Regulation of PTEN stability and activity" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-9020702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "resource": "Reactome", "description": "Interleukin-1 signaling" }, { "id": "R-SSC-9755511", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "resource": "Reactome", "description": "KEAP1-NFE2L2 pathway" }, { "id": "R-SSC-9766229", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "resource": "Reactome", "description": "Degradation of CDH1" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" }, { "id": "R-SSC-9907900", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "resource": "Reactome", "description": "Proteasome assembly" }, { "id": "R-SSC-9931269", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "resource": "Reactome", "description": "AMPK-induced ERAD and lysosome mediated degradation of PD-L1(CD274)" }, { "id": "R-SSC-9932298", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "resource": "Reactome", "description": "Degradation of CRY and PER proteins" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "proteasome regulatory particle, base subcomplex", "id": "GO:0008540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008540", "evidence": [ { "database": "UniProtKB", "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" } ], "pmid": "" }, { "name": "proteasome storage granule", "id": "GO:0034515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034515", "evidence": [ { "database": "UniProtKB", "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "enzyme regulator activity", "id": "GO:0030234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030234", "evidence": [ { "database": "UniProtKB", "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of protein catabolic process", "id": "GO:0042176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042176", "evidence": [ { "database": "UniProtKB", "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F1SMW9", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 345, "end_pos": 347, "annotation": "n_glycosylation_sequon" }, { "start_pos": 466, "end_pos": 468, "annotation": "n_glycosylation_sequon" }, { "start_pos": 742, "end_pos": 744, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMW9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 952, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMW9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMW9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" }, { "id": "PF21505", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21505" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "26S proteasome non-ATPase regulatory subunit 1/RPN2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 345, "start_aa": "Ala", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SMW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW9" }, { "id": "PF18004", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "26S proteasome regulatory subunit RPN2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 785, "end_pos": 920, "start_aa": "Thr", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 345, "end_pos": 347 }, { "start_pos": 466, "end_pos": 468 }, { "start_pos": 742, "end_pos": 744 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLR1-1", "uniprot_ac": "F1SLR1", "uniprot_id": "F1SLR1_PIG", "mass": { "chemical_mass": 27716.0, "monoisotopic_mass": 27716.0 }, "refseq": {}, "gene_names": [ { "name": "NDUFA8", "type": "recommended", "evidence": [ { "id": "F1SLR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8", "type": "recommended", "evidence": [ { "id": "F1SLR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR1/entry#names_and_taxonomy" } ] }, { "name": "Complex I-19kD", "type": "synonym", "evidence": [ { "id": "F1SLR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR1/entry#names_and_taxonomy" } ] }, { "name": "NADH-ubiquinone oxidoreductase 19 kDa subunit", "type": "synonym", "evidence": [ { "id": "F1SLR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE8#function" }, { "database": "UniProtKB", "id": "ARBA00003195", "url": "https://www.uniprot.org/uniprotkb/ARBA00003195#function" }, { "database": "UniProtKB", "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFA8", "url": "https://www.uniprot.org/uniprotkb/F1SLR1", "locus": { "chromosome": "1", "start_pos": 262236482, "end_pos": 262264097, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005528", "url": "https://www.ensembl.org/id/ENSSSCG00000005528" } ] } } ], "crossref": [ { "id": "F1SLR1", "url": "https://alphafold.ebi.ac.uk/entry/F1SLR1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005528", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005528", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "5GPN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GPN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GUP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V30&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V33&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V3M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VC0&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VWL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY9&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYE&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYG&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZ8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W00&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1T&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1V&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1Z&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W20&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W35&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4J&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4N&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4Q&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZO8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZOU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZP8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSK&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSM&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZXZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BUH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BWD&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BXV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CD6&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CDN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CE2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6W&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR010625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "INNEFML", "url": "https://omabrowser.org/oma/group/INNEFML/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13344", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13344", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13344:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13344:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005gpn", "url": "https://www.rcsb.org/structure/pdb_00005gpn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005gup", "url": "https://www.rcsb.org/structure/pdb_00005gup", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2c", "url": "https://www.rcsb.org/structure/pdb_00007v2c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2d", "url": "https://www.rcsb.org/structure/pdb_00007v2d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2e", "url": "https://www.rcsb.org/structure/pdb_00007v2e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2f", "url": "https://www.rcsb.org/structure/pdb_00007v2f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2h", "url": "https://www.rcsb.org/structure/pdb_00007v2h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2k", "url": "https://www.rcsb.org/structure/pdb_00007v2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2r", "url": "https://www.rcsb.org/structure/pdb_00007v2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v30", "url": "https://www.rcsb.org/structure/pdb_00007v30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v31", "url": "https://www.rcsb.org/structure/pdb_00007v31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v32", "url": "https://www.rcsb.org/structure/pdb_00007v32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v33", "url": "https://www.rcsb.org/structure/pdb_00007v33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v3m", "url": "https://www.rcsb.org/structure/pdb_00007v3m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbl", "url": "https://www.rcsb.org/structure/pdb_00007vbl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbp", "url": "https://www.rcsb.org/structure/pdb_00007vbp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vc0", "url": "https://www.rcsb.org/structure/pdb_00007vc0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vwl", "url": "https://www.rcsb.org/structure/pdb_00007vwl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxs", "url": "https://www.rcsb.org/structure/pdb_00007vxs", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy1", "url": "https://www.rcsb.org/structure/pdb_00007vy1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy9", "url": "https://www.rcsb.org/structure/pdb_00007vy9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vye", "url": "https://www.rcsb.org/structure/pdb_00007vye", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyg", "url": "https://www.rcsb.org/structure/pdb_00007vyg", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyi", "url": "https://www.rcsb.org/structure/pdb_00007vyi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vys", "url": "https://www.rcsb.org/structure/pdb_00007vys", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vz8", "url": "https://www.rcsb.org/structure/pdb_00007vz8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzv", "url": "https://www.rcsb.org/structure/pdb_00007vzv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzw", "url": "https://www.rcsb.org/structure/pdb_00007vzw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w00", "url": "https://www.rcsb.org/structure/pdb_00007w00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0h", "url": "https://www.rcsb.org/structure/pdb_00007w0h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0r", "url": "https://www.rcsb.org/structure/pdb_00007w0r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0y", "url": "https://www.rcsb.org/structure/pdb_00007w0y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1o", "url": "https://www.rcsb.org/structure/pdb_00007w1o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1p", "url": "https://www.rcsb.org/structure/pdb_00007w1p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1t", "url": "https://www.rcsb.org/structure/pdb_00007w1t", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1u", "url": "https://www.rcsb.org/structure/pdb_00007w1u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1v", "url": "https://www.rcsb.org/structure/pdb_00007w1v", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1z", "url": "https://www.rcsb.org/structure/pdb_00007w1z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w20", "url": "https://www.rcsb.org/structure/pdb_00007w20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2k", "url": "https://www.rcsb.org/structure/pdb_00007w2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2l", "url": "https://www.rcsb.org/structure/pdb_00007w2l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2r", "url": "https://www.rcsb.org/structure/pdb_00007w2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2u", "url": "https://www.rcsb.org/structure/pdb_00007w2u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2y", "url": "https://www.rcsb.org/structure/pdb_00007w2y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w31", "url": "https://www.rcsb.org/structure/pdb_00007w31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w32", "url": "https://www.rcsb.org/structure/pdb_00007w32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w35", "url": "https://www.rcsb.org/structure/pdb_00007w35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4c", "url": "https://www.rcsb.org/structure/pdb_00007w4c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4d", "url": "https://www.rcsb.org/structure/pdb_00007w4d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4e", "url": "https://www.rcsb.org/structure/pdb_00007w4e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4f", "url": "https://www.rcsb.org/structure/pdb_00007w4f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4g", "url": "https://www.rcsb.org/structure/pdb_00007w4g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4j", "url": "https://www.rcsb.org/structure/pdb_00007w4j", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4k", "url": "https://www.rcsb.org/structure/pdb_00007w4k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4l", "url": "https://www.rcsb.org/structure/pdb_00007w4l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4m", "url": "https://www.rcsb.org/structure/pdb_00007w4m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4n", "url": "https://www.rcsb.org/structure/pdb_00007w4n", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4q", "url": "https://www.rcsb.org/structure/pdb_00007w4q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zo8", "url": "https://www.rcsb.org/structure/pdb_00008zo8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zou", "url": "https://www.rcsb.org/structure/pdb_00008zou", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zp8", "url": "https://www.rcsb.org/structure/pdb_00008zp8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsk", "url": "https://www.rcsb.org/structure/pdb_00008zsk", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsl", "url": "https://www.rcsb.org/structure/pdb_00008zsl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsm", "url": "https://www.rcsb.org/structure/pdb_00008zsm", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsn", "url": "https://www.rcsb.org/structure/pdb_00008zsn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zso", "url": "https://www.rcsb.org/structure/pdb_00008zso", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsq", "url": "https://www.rcsb.org/structure/pdb_00008zsq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsr", "url": "https://www.rcsb.org/structure/pdb_00008zsr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zxz", "url": "https://www.rcsb.org/structure/pdb_00008zxz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009buh", "url": "https://www.rcsb.org/structure/pdb_00009buh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bwd", "url": "https://www.rcsb.org/structure/pdb_00009bwd", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bxv", "url": "https://www.rcsb.org/structure/pdb_00009bxv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cd6", "url": "https://www.rcsb.org/structure/pdb_00009cd6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cdn", "url": "https://www.rcsb.org/structure/pdb_00009cdn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009ce2", "url": "https://www.rcsb.org/structure/pdb_00009ce2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6h", "url": "https://www.rcsb.org/structure/pdb_00009j6h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6w", "url": "https://www.rcsb.org/structure/pdb_00009j6w", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GPN", "url": "https://www.rcsb.org/structure/5GPN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.rcsb.org/structure/5GUP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.rcsb.org/structure/7V2C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.rcsb.org/structure/7V2D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.rcsb.org/structure/7V2E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.rcsb.org/structure/7V2F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.rcsb.org/structure/7V2H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.rcsb.org/structure/7V2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.rcsb.org/structure/7V2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.rcsb.org/structure/7V30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.rcsb.org/structure/7V31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.rcsb.org/structure/7V32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.rcsb.org/structure/7V33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.rcsb.org/structure/7V3M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.rcsb.org/structure/7VBL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.rcsb.org/structure/7VBP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.rcsb.org/structure/7VC0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.rcsb.org/structure/7VWL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.rcsb.org/structure/7VXS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.rcsb.org/structure/7VY1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.rcsb.org/structure/7VY9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.rcsb.org/structure/7VYE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.rcsb.org/structure/7VYG", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.rcsb.org/structure/7VYI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.rcsb.org/structure/7VYS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.rcsb.org/structure/7VZ8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.rcsb.org/structure/7VZV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.rcsb.org/structure/7VZW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.rcsb.org/structure/7W00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.rcsb.org/structure/7W0H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.rcsb.org/structure/7W0R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.rcsb.org/structure/7W0Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.rcsb.org/structure/7W1O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.rcsb.org/structure/7W1P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.rcsb.org/structure/7W1T", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.rcsb.org/structure/7W1U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.rcsb.org/structure/7W1V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.rcsb.org/structure/7W1Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.rcsb.org/structure/7W20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.rcsb.org/structure/7W2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.rcsb.org/structure/7W2L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.rcsb.org/structure/7W2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.rcsb.org/structure/7W2U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.rcsb.org/structure/7W2Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.rcsb.org/structure/7W31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.rcsb.org/structure/7W32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.rcsb.org/structure/7W35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.rcsb.org/structure/7W4C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.rcsb.org/structure/7W4D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.rcsb.org/structure/7W4E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.rcsb.org/structure/7W4F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.rcsb.org/structure/7W4G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.rcsb.org/structure/7W4J", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.rcsb.org/structure/7W4K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.rcsb.org/structure/7W4L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.rcsb.org/structure/7W4M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.rcsb.org/structure/7W4N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.rcsb.org/structure/7W4Q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.rcsb.org/structure/8ZO8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.rcsb.org/structure/8ZOU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.rcsb.org/structure/8ZP8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.rcsb.org/structure/8ZSK", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.rcsb.org/structure/8ZSL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.rcsb.org/structure/8ZSM", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.rcsb.org/structure/8ZSN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.rcsb.org/structure/8ZSO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.rcsb.org/structure/8ZSQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.rcsb.org/structure/8ZSR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.rcsb.org/structure/8ZXZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.rcsb.org/structure/9BUH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.rcsb.org/structure/9BWD", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.rcsb.org/structure/9BXV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.rcsb.org/structure/9CD6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.rcsb.org/structure/9CDN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.rcsb.org/structure/9CE2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.rcsb.org/structure/9J6H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.rcsb.org/structure/9J6W", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF06747", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06747", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6799198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QVE8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLR1-1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTGGMGGAEAKSRPQTPRNFLALRTLCVSRLDGARRLRAAAAHAQTLGGPSAVGRGVQGDPGDATSGISSVRATAIMPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRPDLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWTM", "length": 249, "header": "tr|F1SLR1-1|F1SLR1_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Sus scrofa OX=9823 GN=NDUFA8 PE=1 SV=3 CANONICAL=F1SLR1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1/entry#A0A5G2QVE8-1", "sequence": { "sequence": "MTTGGMGGAEAKSRPQTPRNFLALRTLCVSRLDGARRLRAAAAHAQTLGGPSAVGRGVQGDPGDATSGISSVRATAIMPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRPDLGELSKKEPRNPCHSRSKKCRLSTEGRRMHKRSD", "length": 232, "header": "tr|A0A5G2QVE8-1|F1SLR1_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Sus scrofa OX=9823 GN=NDUFA8 PE=1 SV=1 CANONICAL=F1SLR1-1" }, "locus": { "chromosome": "1", "start_pos": 262258284, "end_pos": 262237123, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071228.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071228.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065928.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065928.1" } ] } }, { "isoform_ac": "F1SLR1-1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1/entry#F1SLR1-1", "sequence": { "sequence": "MTTGGMGGAEAKSRPQTPRNFLALRTLCVSRLDGARRLRAAAAHAQTLGGPSAVGRGVQGDPGDATSGISSVRATAIMPGIVELPTLEDLKVQEVKVSSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALDFFRQIKRHCAEPFTEYWTCIDYSGLQLFRHCRKQQAKFDECVLDKLGWVRPDLGELSKVTKVKTDRPLPENPYHSRARPEPNPEAEGDLKPAKHGSRLFFWTM", "length": 249, "header": "tr|F1SLR1-1|F1SLR1_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Sus scrofa OX=9823 GN=NDUFA8 PE=1 SV=3 CANONICAL=F1SLR1-1" }, "locus": { "chromosome": "1", "start_pos": 262258284, "end_pos": 262243405, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006079.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006079.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005924.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005924.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The architecture of the mammalian respirasome.", "journal": "Nature", "date": "2016", "authors": "Gu Jinke, Wu Meng, Guo Runyu, Yan Kaige, Lei Jianlin, Gao Ning, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" } ], "reference": [ { "type": "PubMed", "id": "27654917", "url": "https://glygen.org/publication/PubMed/27654917" } ] }, { "title": "Structure of Mammalian Respiratory Supercomplex I1III2IV1.", "journal": "Cell", "date": "2016", "authors": "Wu Meng, Gu Jinke, Guo Runyu, Huang Yushen, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" } ], "reference": [ { "type": "PubMed", "id": "27912063", "url": "https://glygen.org/publication/PubMed/27912063" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "The coupling mechanism of mammalian mitochondrial complex I.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Gu Jinke, Liu Tianya, Guo Runyu, Zhang Laixing, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" } ], "reference": [ { "type": "PubMed", "id": "35145322", "url": "https://glygen.org/publication/PubMed/35145322" } ] } ], "pathway": [ { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial electron transport, NADH to ubiquinone", "id": "GO:0006120", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006120", "evidence": [ { "database": "UniProtKB", "id": "F1SLR1", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLR1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 249, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLR1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLR1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR1" }, { "id": "PF06747", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06747" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CHCH", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 188, "start_aa": "Cys", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIT5-1", "uniprot_ac": "F1SIT5", "uniprot_id": "F1SIT5_PIG", "mass": { "chemical_mass": 82697.0, "monoisotopic_mass": 82697.0 }, "refseq": { "ac": "XP_020956449", "name": "transducin-like enhancer protein 3 isoform X12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956449" }, "gene_names": [ { "name": "TLE3", "type": "recommended", "evidence": [ { "id": "F1SIT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ] }, { "name": "TLE3", "type": "synonym", "evidence": [ { "id": "XP_020956449", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956449" } ] } ], "protein_names": [ { "name": "TLE family member 3, transcriptional corepressor", "type": "synonym", "evidence": [ { "id": "F1SIT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIT5/entry#names_and_taxonomy" } ] }, { "name": "transducin-like enhancer protein 3 isoform X12", "type": "synonym", "evidence": [ { "id": "XP_020956449", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956449" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TLE3", "url": "https://www.uniprot.org/uniprotkb/F1SIT5", "locus": { "chromosome": "1", "start_pos": 167808510, "end_pos": 167855911, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004971", "url": "https://www.ensembl.org/id/ENSSSCG00000004971" } ] } } ], "crossref": [ { "id": "F1SIT5", "url": "https://alphafold.ebi.ac.uk/entry/F1SIT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004971", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004971", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154048", "url": "https://www.ncbi.nlm.nih.gov/gene/100154048", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10814", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10814", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10814:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10814:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-201722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3769402", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3769402", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641265", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641265", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9018519", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020956449", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956449", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QXM9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGPPVQLPPHPSGLQPPGIPPVTGSSSGLLALGALGSQAHLSVKDEKNHHELDHRERESSANNSVSPSESLRASEKHRGSADYSMEAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRSMPGKPPGMDPIASALRTPISITSSYAAPFAMMSHHEMNGSLTSPSAYAGLHNIPPQMSAAAAAAAAAYGRSPMVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPNIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY", "length": 764, "header": "tr|F1SIT5-1|F1SIT5_PIG Isoform 1 of TLE family member 3, transcriptional corepressor OS=Sus scrofa OX=9823 GN=TLE3 PE=3 SV=4 CANONICAL=F1SIT5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXM9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIT5/entry#A0A5G2QXM9-1", "sequence": { "sequence": "MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGPPVQLPPHPSGLQPPGIPPVTGSSSGLLALGALGSQAHLSVKDEKNHHELDHRERESSANNSVSPSESLRASEKHRGSADYSMEAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNENDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRSMPGKPPGMDPIASALRTPISITSSYAAPFAMMSHHEMNGSLTSPSAYAGLHNIPPQMSAAAAAAAAAYGRSPMVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPNIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY", "length": 713, "header": "tr|A0A5G2QXM9-1|F1SIT5_PIG Computationally mapped isoform of TLE family member 3, transcriptional corepressor OS=Sus scrofa OX=9823 GN=TLE3 PE=3 SV=1 CANONICAL=F1SIT5-1" }, "locus": { "chromosome": "1", "start_pos": 167854856, "end_pos": 167810408, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073144.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073144.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066699.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066699.1" } ] } }, { "isoform_ac": "F1SIT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIT5/entry#F1SIT5-1", "sequence": { "sequence": "MYPQGRHPAPHQPGQPGFKFTVAESCDRIKDEFQFLQAQYHSLKVEYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTILAQIMPFLSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHATHGPPVQLPPHPSGLQPPGIPPVTGSSSGLLALGALGSQAHLSVKDEKNHHELDHRERESSANNSVSPSESLRASEKHRGSADYSMEAKKRKAEEKDSLSRYDSDGDKSDDLVVDVSNEDPATPRVSPAHSPPENGLDKARGLKKDAPTSPASVASSSSTPSSKTKDLGHNDKSSTPGLKSNTPTPRNDAPTPGTSTTPGLRSMPGKPPGMDPIASALRTPISITSSYAAPFAMMSHHEMNGSLTSPSAYAGLHNIPPQMSAAAAAAAAAYGRSPMVGFDPHPPMRATGLPSSLASIPGGKPAYSFHVSADGQMQPVPFPHDALAGPNIPRHARQINTLSHGEVVCAVTISNPTRHVYTGGKGCVKIWDISQPGSKSPISQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLTIWDLASPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHHTKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISADDKYIVTGSGDKKATVYEVIY", "length": 764, "header": "tr|F1SIT5-1|F1SIT5_PIG Isoform 1 of TLE family member 3, transcriptional corepressor OS=Sus scrofa OX=9823 GN=TLE3 PE=3 SV=4 CANONICAL=F1SIT5-1" }, "locus": { "chromosome": "1", "start_pos": 167854856, "end_pos": 167810408, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005484.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005484.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005347.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005347.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 296, "start_aa": "Thr", "end_pos": 296, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr296", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 328, "start_aa": "Thr", "end_pos": 328, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr328", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXM9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXM9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-201722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "resource": "Reactome", "description": "Formation of the beta-catenin:TCF transactivating complex" }, { "id": "R-SSC-3769402", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3769402", "resource": "Reactome", "description": "Deactivation of the beta-catenin transactivating complex" }, { "id": "R-SSC-4641265", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641265", "resource": "Reactome", "description": "Repression of WNT target genes" }, { "id": "R-SSC-9018519", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "resource": "Reactome", "description": "Estrogen-dependent gene expression" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" }, { "name": "beta-catenin-TCF complex", "id": "GO:1990907", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990907", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" }, { "name": "Wnt signaling pathway", "id": "GO:0016055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016055", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" }, { "name": "white fat cell differentiation", "id": "GO:0050872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050872", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" }, { "name": "negative regulation of canonical Wnt signaling pathway", "id": "GO:0090090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090090", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" }, { "name": "negative regulation of cold-induced thermogenesis", "id": "GO:0120163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120163", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F1SIT5", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 599, "end_pos": 601, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIT5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 764, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIT5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIT5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIT5" }, { "id": "PF03920", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03920" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Groucho/TLE N-terminal Q-rich", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 133, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 296, 328 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 199, "end_pos": 201 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 599, "end_pos": 601 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJU4-1", "uniprot_ac": "F1SJU4", "uniprot_id": "F1SJU4_PIG", "mass": { "chemical_mass": 41466.0, "monoisotopic_mass": 41466.0 }, "refseq": {}, "gene_names": [ { "name": "PARVB", "type": "recommended", "evidence": [ { "id": "F1SJU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ] } ], "protein_names": [ { "name": "Parvin beta", "type": "synonym", "evidence": [ { "id": "F1SJU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PARVB", "url": "https://www.uniprot.org/uniprotkb/F1SJU4", "locus": { "chromosome": "5", "start_pos": 4906685, "end_pos": 5015441, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000024", "url": "https://www.ensembl.org/id/ENSSSCG00000000024" } ] } } ], "crossref": [ { "id": "F1SJU4", "url": "https://alphafold.ebi.ac.uk/entry/F1SJU4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000024", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000024", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21336", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21336", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21338", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21338", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12114", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12114", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12114:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12114:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-446388", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446388", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QZ66", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZ66-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZ66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R257", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R257", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R257-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R257-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJU4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSAPLRSPASRPHRMKKDESFLGKLGGTLARKKKAKEVSDLQEEGKNAIHAPMSPASVEIHPEDTQLEENEERTVIDPTSRDDPRFKELLKVLIDWINDVLVEERIIVKQLEEDLYDGQVLQKLLEKLADCKLNVAEVTQSEIGKQKLQAVLEAVQDLLRPHGRALQWTVDSIHGKNLVAILHLLVALATHFRAPIHLPEHVSVQVVVVRKREGMLHSSHVTEELTTTTEMMMGRFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYFVPLHNFYLTPDSFPQKVHNVSFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTKYKHLE", "length": 364, "header": "tr|F1SJU4-1|F1SJU4_PIG Isoform 1 of Parvin beta OS=Sus scrofa OX=9823 GN=PARVB PE=3 SV=4 CANONICAL=F1SJU4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZ66-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU4/entry#A0A5G2QZ66-1", "sequence": { "sequence": "MQVMAAALPTRALCDPLAAPPAAALCPQPPAPASHASSSLTLFTMSDLQEEGKNAIHAPMSPASVEIHPEDTQLEENEERTVIDPTSRDDPRFKELLKVLIDWINDVLVEERIIVKQLEEDLYDGQVLQKLLEKLADCKLNVAEVTQSEIGKQKLQAVLEAVQDLLRPHGRALQWTVDSIHGKNLVAILHLLVALATHFRAPIHLPEHVSVQVVVVRKREGMLHSSHVTEELTTTTEMMMGRFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYFVPLHNFYLTPDSFPQKVHNVSFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTKYKHLE", "length": 370, "header": "tr|A0A5G2QZ66-1|F1SJU4_PIG Computationally mapped isoform of Parvin beta OS=Sus scrofa OX=9823 GN=PARVB PE=3 SV=2 CANONICAL=F1SJU4-1" }, "locus": { "chromosome": "5", "start_pos": 4980590, "end_pos": 4909652, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072505.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072505.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063530.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063530.2" } ] } }, { "isoform_ac": "A0A5G2R257-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU4/entry#A0A5G2R257-1", "sequence": { "sequence": "MSSAPLRSPASRPHRMKKDESFLGKLGGTLARKKKAKEVSDLQEEGKNAIHAPMSPASVEIHPEDTQLEENEERTVIDPTSRDDPRFKELLKVLIDWINDVLVEERIIVKQLEEDLYDGQVLQKLLEKLADCKLNVAEVTQSEIGKQKLQAVLEAVQDLLRPHGRALQWTVDSIHGKNLVAILHLLVALATHFRAPIHLPEHVSVQVVVVRKREGMLHSSHVTEELTTTTEMMMGRFERDAFDTLFDHAPDKLSVVKKFADGVYLVLLMGLLEDYFVPLHNFYLTPDSFPQKVHNVSFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTKYKHLE", "length": 341, "header": "tr|A0A5G2R257-1|F1SJU4_PIG Computationally mapped isoform of Parvin beta OS=Sus scrofa OX=9823 GN=PARVB PE=3 SV=2 CANONICAL=F1SJU4-1" }, "locus": { "chromosome": "5", "start_pos": 5015339, "end_pos": 4909652, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079857.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079857.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071184.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071184.2" } ] } }, { "isoform_ac": "F1SJU4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU4/entry#F1SJU4-1", "sequence": { "sequence": "MSSAPLRSPASRPHRMKKDESFLGKLGGTLARKKKAKEVSDLQEEGKNAIHAPMSPASVEIHPEDTQLEENEERTVIDPTSRDDPRFKELLKVLIDWINDVLVEERIIVKQLEEDLYDGQVLQKLLEKLADCKLNVAEVTQSEIGKQKLQAVLEAVQDLLRPHGRALQWTVDSIHGKNLVAILHLLVALATHFRAPIHLPEHVSVQVVVVRKREGMLHSSHVTEELTTTTEMMMGRFERDAFDTLFDHAPDKLSVVKKSLITFVNKHLNKLNLEVTELETQFADGVYLVLLMGLLEDYFVPLHNFYLTPDSFPQKVHNVSFAFELMLDGGLKKPKARPEDVVNLDLKSTLRVLYNLFTKYKHLE", "length": 364, "header": "tr|F1SJU4-1|F1SJU4_PIG Isoform 1 of Parvin beta OS=Sus scrofa OX=9823 GN=PARVB PE=3 SV=4 CANONICAL=F1SJU4-1" }, "locus": { "chromosome": "5", "start_pos": 5015339, "end_pos": 4909652, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000025.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000025.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000025.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000025.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R257", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R257" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-446388", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446388", "resource": "Reactome", "description": "Regulation of cytoskeletal remodeling and cell spreading by IPP complex components" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "lamellipodium assembly", "id": "GO:0030032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030032", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "establishment or maintenance of cell polarity regulating cell shape", "id": "GO:0071963", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071963", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" }, { "name": "substrate adhesion-dependent cell spreading", "id": "GO:0034446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034446", "evidence": [ { "database": "UniProtKB", "id": "F1SJU4", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 318, "end_pos": 320, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJU4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJU4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJU4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU4" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 194, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 318, "end_pos": 320 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SN68-1", "uniprot_ac": "F1SN68", "uniprot_id": "F1SN68_PIG", "mass": { "chemical_mass": 23045.0, "monoisotopic_mass": 23045.0 }, "refseq": { "ac": "XP_005660429", "name": "alpha-1-acid glycoprotein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660429" }, "gene_names": [ { "name": "ORM1", "type": "recommended", "evidence": [ { "id": "F1SN68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN68" } ] }, { "name": "ORM1", "type": "synonym", "evidence": [ { "id": "XP_005660429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660429" } ] } ], "protein_names": [ { "name": "Alpha-1-acid glycoprotein", "type": "recommended", "evidence": [ { "id": "F1SN68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN68/entry#names_and_taxonomy" } ] }, { "name": "alpha-1-acid glycoprotein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005660429", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660429" } ] } ], "function": [ { "annotation": "Functions as transport protein in the blood stream.", "evidence": [ { "database": "UniProtKB", "id": "F1SN68", "url": "https://www.uniprot.org/uniprotkb/F1SN68#function" }, { "database": "UniProtKB", "id": "PIRNR036899", "url": "https://www.uniprot.org/uniprotkb/PIRNR036899#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SN68", "url": "https://www.uniprot.org/uniprotkb/F1SN68" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ORM1", "url": "https://www.uniprot.org/uniprotkb/F1SN68", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000005488", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005488", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19451", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19451", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "396901", "url": "https://www.ncbi.nlm.nih.gov/gene/396901", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:396901", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396901", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KTFMLAF", "url": "https://omabrowser.org/oma/group/KTFMLAF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R0I4", "url": "https://www.orthodb.org/?gene=A0A5G2R0I4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SN68", "url": "https://www.orthodb.org/?gene=F1SN68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11967", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11967", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11967:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11967:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005660429", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660429", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R0I4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0I4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN68", "url": "https://www.uniprot.org/uniprotkb/F1SN68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN68-1", "url": "https://www.uniprot.org/uniprotkb/F1SN68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALLWALAVLSLLPLLNAQNPLCANLTAVPITNATLDLISGKWYYIGSAFRNPQYNESARSIQAAFFFFDPKPAEDKINLREYQTIGNQCIYNDSSLKVHRENGSLSKHEMGREHVADLLLTKVPKTFMLINSLHDKNNVGLSFYADKAEVTPEQMKEFHDAIECTGIHKSEITYTDEKKDLCGPLEKQHEEERKKEKEKEGS", "length": 203, "header": "tr|F1SN68-1|F1SN68_PIG Isoform 1 of Alpha-1-acid glycoprotein OS=Sus scrofa OX=9823 GN=ORM1 PE=1 SV=1 CANONICAL=F1SN68-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0I4-1", "url": "https://www.uniprot.org/uniprotkb/F1SN68/entry#A0A5G2R0I4-1", "sequence": { "sequence": "MALLWALAVLSLLPLLNAQNPLCANLTAVPITNATLDLISGKWYYIGSAFRNPQYNESARSIQAAFFFFDPKPAEDKINLREYQTIGNQCIYNDSSLKVHRENGSLSKHEMGREHVADLLLTKVPKTFMLINSLHDKNNVGLSFYADKAEVTPEQMKEFHDAIECTGIHKSEITYTDEKKVSAGGPGREAPEGGPTLGGRRAPERSRLHRKP", "length": 212, "header": "tr|A0A5G2R0I4-1|F1SN68_PIG Computationally mapped isoform of Alpha-1-acid glycoprotein OS=Sus scrofa OX=9823 GN=ORM1 PE=1 SV=1 CANONICAL=F1SN68-1" }, "locus": { "chromosome": "1", "start_pos": 254941772, "end_pos": 254939305, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083776.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083776.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070617.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070617.1" } ] } }, { "isoform_ac": "F1SN68-1", "url": "https://www.uniprot.org/uniprotkb/F1SN68/entry#F1SN68-1", "sequence": { "sequence": "MALLWALAVLSLLPLLNAQNPLCANLTAVPITNATLDLISGKWYYIGSAFRNPQYNESARSIQAAFFFFDPKPAEDKINLREYQTIGNQCIYNDSSLKVHRENGSLSKHEMGREHVADLLLTKVPKTFMLINSLHDKNNVGLSFYADKAEVTPEQMKEFHDAIECTGIHKSEITYTDEKKDLCGPLEKQHEEERKKEKEKEGS", "length": 203, "header": "tr|F1SN68-1|F1SN68_PIG Isoform 1 of Alpha-1-acid glycoprotein OS=Sus scrofa OX=9823 GN=ORM1 PE=1 SV=1 CANONICAL=F1SN68-1" }, "locus": { "chromosome": "1", "start_pos": 254942944, "end_pos": 254939305, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006034.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006034.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005884.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005884.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0I4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0I4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:396901", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396901", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "P02763-1", "protein_name": "Alpha-1-acid glycoprotein 1", "gene_name": "ORM1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALSWVLTVLSLLPLLEAQIPLCANLVPVPITNATLDRITGKWFYIASAFRNEEYNKSVQEIQATFFYFTPNKTEDTIFLREYQTRQDQCIYNTTYLNVQRENGTISRYVGGQEHFAHLLILRDTKTYMLAFDVNDEKNWGLSVYADKPETTKEQLGEFYEALDCLRIPKSDVVYTDWKKDKCEPLEKQHEKERKQEEGES", "length": 201 }, "evidence": [ { "id": "F1SN68", "url": "https://omabrowser.org/oma/group/F1SN68/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02764-1", "protein_name": "Alpha-1-acid glycoprotein", "gene_name": "Orm1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALHMVLVVLSLLPLLEAQNPEPANITLGIPITNETLKWLSDKWFYMGAAFRDPVFKQAVQTIQTEYFYLTPNLINDTIELREFQTTDDQCVYNFTHLGVQRENGTLSKCAGAVKIFAHLIVLKKHGTFMLAFNLTDENRGLSFYAKKPDLSPELRKIFQQAVKDVGMDESEIVFVDWTKDKCSEQQKQQLELEKETKKETKKDP", "length": 205 }, "evidence": [ { "id": "F1SN68", "url": "https://omabrowser.org/oma/group/F1SN68/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q60590-1", "protein_name": "Alpha-1-acid glycoprotein 1", "gene_name": "Orm1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALHTVLIILSLLPMLEAQNPEHANFTIGEPITNETLSWLSDKWFFMGAAFRKLEYRQAIQTMQSEFFYLTTNLINDTIELRESQTIGDQCVYNSTHLGFQRENGTFSKYEGGVETFAHLIVLRKHGAFMLAFDLKDEKKRGLSLYAKRPDITPELREVFQKAVTHVGMDESEIIFVDWKKDRCGQQEKKQLELGKETKKDPEEGQA", "length": 207 }, "evidence": [ { "id": "F1SN68", "url": "https://omabrowser.org/oma/group/F1SN68/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SN68", "url": "https://www.uniprot.org/uniprotkb/F1SN68" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "acute-phase response", "id": "GO:0006953", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006953", "evidence": [ { "database": "UniProtKB", "id": "F1SN68", "url": "https://www.uniprot.org/uniprotkb/F1SN68" } ], "pmid": "" }, { "name": "regulation of immune system process", "id": "GO:0002682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002682", "evidence": [ { "database": "UniProtKB", "id": "F1SN68", "url": "https://www.uniprot.org/uniprotkb/F1SN68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SN68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN68" }, { "id": "PF00061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipocalin/cytosolic fatty-acid binding", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 179, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 25, "end_pos": 27 }, { "start_pos": 33, "end_pos": 35 }, { "start_pos": 56, "end_pos": 58 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFQ3-1", "uniprot_ac": "F1SFQ3", "uniprot_id": "F1SFQ3_PIG", "mass": { "chemical_mass": 61558.0, "monoisotopic_mass": 61558.0 }, "refseq": {}, "gene_names": [ { "name": "EOGT", "type": "recommended", "evidence": [ { "id": "F1SFQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3" } ] } ], "protein_names": [ { "name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "type": "recommended", "evidence": [ { "id": "F1SFQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.255", "type": "synonym", "evidence": [ { "id": "F1SFQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3/entry#names_and_taxonomy" } ] }, { "name": "Extracellular O-linked N-acetylglucosamine transferase", "type": "synonym", "evidence": [ { "id": "F1SFQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalyzes the transfer of a single N-acetylglucosamine from UDP-GlcNAc to a serine or threonine residue in extracellular proteins resulting in their modification with a beta-linked N-acetylglucosamine (O-GlcNAc). Specifically glycosylates the Thr residue located between the fifth and sixth conserved cysteines of folded EGF-like domains.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Z5#function" }, { "database": "UniProtKB", "id": "ARBA00037761", "url": "https://www.uniprot.org/uniprotkb/ARBA00037761#function" }, { "database": "UniProtKB", "id": "A0A5G2R2G1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2G1#function" }, { "database": "UniProtKB", "id": "F1SFQ3", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFQ3", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EOGT", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3", "locus": { "chromosome": "13", "start_pos": 50396629, "end_pos": 50436199, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011504", "url": "https://www.ensembl.org/id/ENSSSCG00000011504" } ] } } ], "crossref": [ { "id": "F1SFQ3", "url": "https://alphafold.ebi.ac.uk/entry/F1SFQ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011504", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011504", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "GHCELNR", "url": "https://omabrowser.org/oma/group/GHCELNR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR20961", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20961", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20961:SF148", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20961:SF148", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04577", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04577", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "48904", "url": "https://www.rhea-db.org/rhea/48904", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "48908", "url": "https://www.rhea-db.org/rhea/48908", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R2G1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2G1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2G1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2G1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9Z5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Z5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Z5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFQ3", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFQ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLMLLVFGALLHEVPLSGQDKAPPQADGILGAPLFNYASLRLPEEHIPFFLHNNRHIATVCKKDSRCPYKKYLENLKYCWGYEKSCKPQFRFGYPVCTYVDMGWTDTLESAEDIFWKQADFGYAGERLEELHVLCQAEEMNDSSLVCSRYLQYCRATNIYLDLRNIKRNHDRFKEDFFQSGEIGGHCKLDIRTLMSEGQRKSPLQSGFAELQSYTQLNFRPIEDAACDIVIEKPTYFMKLDAGVNMYHHFCDFVNLYITQHVNNSFSTDVYVVMWDTSSYGYGDLFSDTWKAFTDYDVIHLKTYDSKRVCFKEAIFSLLPRMRYGLFYNTPLISGCQNTGLFRAFSQHVLHRLNITQQGPKDGKIRVTILARSTEYRKILNQNELVNALKTVSTFEVRIVDYKYKELAFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCGDERCYLDLARLRGVHYITWRRQNKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMFLVLQAADHVLQHPKWPFKNKHDEL", "length": 527, "header": "tr|F1SFQ3-1|F1SFQ3_PIG Isoform 1 of EGF domain-specific O-linked N-acetylglucosamine transferase OS=Sus scrofa OX=9823 GN=EOGT PE=3 SV=4 CANONICAL=F1SFQ3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R2G1-1", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3/entry#A0A5G2R2G1-1", "sequence": { "sequence": "MLMLLVFGALLHEVPLSGQDKAPPQADGILGAPLFNYASLRLPEEHIPFFLHNNRHIATVCKKDSRCPYKKYLENLKYCWGYEKSCKPQFRFGYPVCTYVDMGWTDTLESAEDIFWKQADFGYAGERLEELHVLCQAEEMNDSSLVCSRYLQYCRATNIYLDLRNIKRNHDRFKEDFFQSGEIGGHCKLDIRTLMSEGQRKSPLQWFAELQSYTQLNFRPIEDAACDIVIEKPTYFMKLDAGVNMYHHFCDFVNLYITQHVNNSFSTDVYVVMWDTDGKIRVTILARSTEYRKILNQNELVNALKTVSTFEVRIVDYKYKELAFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCGDERCYLDLARLRGVHYITWRRQNKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMFLVLQAADHVLQHPKWPFKNKHDEL", "length": 442, "header": "tr|A0A5G2R2G1-1|F1SFQ3_PIG Computationally mapped isoform of EGF domain-specific O-linked N-acetylglucosamine transferase OS=Sus scrofa OX=9823 GN=EOGT PE=3 SV=1 CANONICAL=F1SFQ3-1" }, "locus": { "chromosome": "13", "start_pos": 50432555, "end_pos": 50398856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076062.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076062.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064724.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064724.1" } ] } }, { "isoform_ac": "A0A5G2R9Z5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3/entry#A0A5G2R9Z5-1", "sequence": { "sequence": "MLMLLVFGALLHEVPLSGQDKAPPQADGILGAPLFNYASLRLPEEHIPFFLHNNRHIATVCKKDSRCPYKKYLENLKYCWGYEKSCKPQFRFGYPVCTYVDMGWTDTLESAEDIFWKQADFGYAGERLEELHVLCQAEEMNDSSLVCSRYLQYCRATNIYLDLRNIKRNHDRFKEDFFQSGEIGGHCKLDIRTLMSEGQRKSPLQWFAELQSYTQLNFRPIEDAACDIVIEKPTYFMKLDAGVNMYHHFCDFVNLYITQHVNNSFSTDVYVVMWDTSSYGYGDLFSDTWKAFTDYDVIHLKTYDSKRVCFKEAIFSLLPRMRYGLFYNTPLISGCQNTGLFRAFSQHVLHRLNITQQGPKDGKIRVTILARSTEYRKILNQNELVNALKTVSTFEVRIVDYKYKELAFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCGDERCYLDLARLRGVHYITWRRQNKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMFLVLQAADHVLQHPKWPFKNKHDEL", "length": 526, "header": "tr|A0A5G2R9Z5-1|F1SFQ3_PIG Computationally mapped isoform of EGF domain-specific O-linked N-acetylglucosamine transferase OS=Sus scrofa OX=9823 GN=EOGT PE=3 SV=2 CANONICAL=F1SFQ3-1" }, "locus": { "chromosome": "13", "start_pos": 50432555, "end_pos": 50398856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077875.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077875.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067430.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067430.2" } ] } }, { "isoform_ac": "F1SFQ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3/entry#F1SFQ3-1", "sequence": { "sequence": "MLMLLVFGALLHEVPLSGQDKAPPQADGILGAPLFNYASLRLPEEHIPFFLHNNRHIATVCKKDSRCPYKKYLENLKYCWGYEKSCKPQFRFGYPVCTYVDMGWTDTLESAEDIFWKQADFGYAGERLEELHVLCQAEEMNDSSLVCSRYLQYCRATNIYLDLRNIKRNHDRFKEDFFQSGEIGGHCKLDIRTLMSEGQRKSPLQSGFAELQSYTQLNFRPIEDAACDIVIEKPTYFMKLDAGVNMYHHFCDFVNLYITQHVNNSFSTDVYVVMWDTSSYGYGDLFSDTWKAFTDYDVIHLKTYDSKRVCFKEAIFSLLPRMRYGLFYNTPLISGCQNTGLFRAFSQHVLHRLNITQQGPKDGKIRVTILARSTEYRKILNQNELVNALKTVSTFEVRIVDYKYKELAFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCGDERCYLDLARLRGVHYITWRRQNKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMFLVLQAADHVLQHPKWPFKNKHDEL", "length": 527, "header": "tr|F1SFQ3-1|F1SFQ3_PIG Isoform 1 of EGF domain-specific O-linked N-acetylglucosamine transferase OS=Sus scrofa OX=9823 GN=EOGT PE=3 SV=4 CANONICAL=F1SFQ3-1" }, "locus": { "chromosome": "13", "start_pos": 50432555, "end_pos": 50398856, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012589.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012589.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012260.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012260.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R2G1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2G1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0JND3-1", "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "gene_name": "EOGT", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFMLLVFGALLPEVPLSGQDKAPPQADGISATPLFNYASLRLPEEHIPFFLHNNRHIATVCRKDSHCPYKKYLENLKYCWGYEKSCRPEFRFGYPVCTYVDMGWTDTLESAQEIFWKQADFGYAAERLEELHVLCQPKEKNDSSLVCSRYLQYCRATNIYLDLRNIKRNHDRFKEDFVQSGEIGGYCKLDIRSLMSQGQRKSPLQSWFAELQSYTELNFRPVEDAQCDIVIEKPTYFMKLDAGVNMYHHFCDFINLYITQHVNNSFSTDVYVVMWDTSSYGYGDLFSDTWKAFTDYDVIHLKTYDAKRVCFKEAIFSLLPRMRYGLFYNTPLISGCQNTGLFRAFSQHVLHRLNITQEGPKGGKIRVTILARSTEYRKILNQNELVNALKTVSTFEVQIVDYKYKELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCGDERCYLDLARLRGVHYITWRRQNKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQAADYVLQHPKWPFKKKHDEL", "length": 527 }, "evidence": [ { "id": "F1SFQ3", "url": "https://omabrowser.org/oma/group/F1SFQ3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3GS65-1", "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "gene_name": "Eogt", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLMLLAFGVLLHEVPLSGQDEAHSEADSVPGEALYDYSSLRLPERHIPFFLHNNRHIASVCKEDSHCPYKKHLENLNYCWGYEKSCKPEFRFGYPVCSYVDVGWTDTLESAADMFWKQADFGYARERLEETRTLCQPERTSDSSLVCSRYLQYCRATGLYLDLRNVKRSPDRFKEDFLQGGEVGGHCKLDSQALMSEGQRKSPLQSWFAELQGYTQLNFRPIEDAKCDLIVEKPTYFMKLDAGVNMYHHFCDFLNLYITQHVNNSFSTDVYIVMWDTSSYGYGDLFSDTWKAFTDYDVIHLKTYDFKKVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTGLFRAFSQHVLHRLNITQEGPKDGKVRVTILARSTEYRKILNQNELVNALKTVSTFEVRIVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLARLRGVHYITWRKPNKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQASEHVLQHPQWPFKKKHDEL", "length": 527 }, "evidence": [ { "id": "F1SFQ3", "url": "https://omabrowser.org/oma/group/F1SFQ3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5NDL0-1", "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "gene_name": "Eogt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLMLLVFGVLLHEVPLSGQDEAHPEADRVPGEALYDYSSLRLPEEHIPFFLHSNRHVASVCREDSHCPYKKHLESLNSCWGYEKSCTPESRFGSPICSYVDLGWTDTLESAQDMFWKQADFGYARERLEEIRMFCRPESASDSSLLCSRYLQYCRATGLYLDLRNIKRNHDRFKEDFLQGGDIGGYCKLDRHALVSEGQRKSPLQSWFAELQGYTQLNFRPIEDAKCDIVVEKPTYFMKLDAGINMYHHFCDFLNLYLTQHINNSFSTDVYIVMWDTSSYGYGDLFSDTWKAFTDYDVIHLKTYDSKKVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTGLFRAFSQHVLHRLNISQEGPKDGKLRVTILARSTEYRKILNQNELVNALKTVSTFEVRVVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLARLRGIYYITWQKPSKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQAAEHVLQHPQWPLKKNHDEL", "length": 527 }, "evidence": [ { "id": "F1SFQ3", "url": "https://omabrowser.org/oma/group/F1SFQ3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5NDL2-1", "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "gene_name": "EOGT", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLMLFVFGVLLHEVSLSGQNEAPPNTHSIPGEPLYNYASIRLPEEHIPFFLHNNRHIATVCRKDSLCPYKKHLEKLKYCWGYEKSCKPEFRFGYPVCSYVDMGWTDTLESAEDIFWKQADFGYARERLEEMHVLCQPKETSDSSLVCSRYLQYCRATNLYLDLRNIKRNHDRFKEDFFQSGEIGGHCKLDIRTLTSEGQRKSPLQSWFAELQSYTQLNFRPIEDAKCDIVIEKPTYFMKLDAGVNMYHHFCDFINLYITQHVNNSFSTDVYIVMWDTSSYGYGDLFSDTWNAFTDYDVIHLKTYDSKRVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTGLFRAFAQHVLHRLNITQEGPKDGKIRVTILARSTEYRKILNQNELVNALKTVSTFEVQIVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLARLRGVHYITWRRQNKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQAADHVLQHPKWPFKKKHDEL", "length": 527 }, "evidence": [ { "id": "F1SFQ3", "url": "https://omabrowser.org/oma/group/F1SFQ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BYW9-1", "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "gene_name": "Eogt", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLMLLVFGVLLHEVPLSGQDKAHSEADDAPGKALYDYSSLRLPAEHIPFFLHNNRHVASVCREDSHCPYKKHLENLNYCWGYEKSCAPEFRFGSPVCSYVDLGWTDTLESAQDMFWRQADFGYARERLGEIRTICQPERASDSSLVCSRYLQYCRATGLYLDLRNIKRNHDRFKEDFLQGGEIGGYCKLDSHALVSEGQRKSPLQSWFAELQGYTQLNFRPIEDAKCDIVVEKPTYFMKLDAGINMYHHFCDFLNLYLTQHVNNSFSTDVYIVMWDTSTYGYGDLFSDTWKAFTDYDVIHLKTYDSKKVCFKEAVFSLLPRMRYGLFYNTPLISGCQNTGLFRAFSQHVLHRLNITQEGPKDGKVRVTILARSTEYRKILNQDELVNALKTVSTFEVRVVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAVFELYNCEDERCYLDLARLRGIHYITWRKPSKVFPQDKGHHPTLGEHPKFTNYSFDVEEFMYLVLQAAEHVLQHPQWPFKKKHDEL", "length": 527 }, "evidence": [ { "id": "F1SFQ3", "url": "https://omabrowser.org/oma/group/F1SFQ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VQB7-1", "protein_name": "EGF domain-specific O-linked N-acetylglucosamine transferase", "gene_name": "Eogt", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPILPILIGILHLSLAEDAKHLDGFSLPSLPSEHLIRYLNTFPKLKQQLPTNLTGKGTISSACWGHERDCTPAGRFQTPQCPGEHTGWARSKEAQVRTFYNQADFGYIQEQLSQLTPQCVPTYLGDSSLECTHYLRFCRGRNLLFDFRGLEQREERIRYHMDVLGPGQLLGHCKLNRTRLSGEMEHIGSALQSWGPELRNFDVLPHPVLESGLCDVVVNTPTFIMKIDATYNMYHHFCDFFNLYASLFVNQSHPAAFNTDVQILIWETYPYDSPFRDTFKAFSQRPVWTLSDVEGKRVCFKNVVLPLLPRMIFGLFYNTPIIQGCSNSGLFRAFSEFILHRLQIPYKPPQQKIRITYLSRRTKYRQVLNEDELLAPLEANDKYDVQRVSYERLPFTNQLAITRNTDILIGMHGAGLTHLLFLPNWACIFELYNCEDPNCYKDLARLRGVRYRTWEQRDLVYPQDEGHHPEGGAHAKFTNYSFDVKEFVHLVDGAAEEILSHKEFPRRASENPSKTQRNEL", "length": 520 }, "evidence": [ { "id": "F1SFQ3", "url": "https://omabrowser.org/oma/group/F1SFQ3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein O-acetylglucosaminyltransferase activity", "id": "GO:0097363", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097363", "evidence": [ { "database": "UniProtKB", "id": "F1SFQ3", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "F1SFQ3", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein O-linked glycosylation", "id": "GO:0006493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006493", "evidence": [ { "database": "UniProtKB", "id": "F1SFQ3", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 493, "end_pos": 495, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "48904", "name": "", "equation": "L-seryl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-(N-acetyl-beta-D-glucosaminyl)-L-seryl-[protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "48904", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/48904" } ] }, { "id": "48908", "name": "", "equation": "L-threonyl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-(N-acetyl-beta-D-glucosaminyl)-L-threonyl-[protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "48908", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/48908" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFQ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 527, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFQ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFQ3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFQ3" }, { "id": "PF04577", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04577" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyltransferase 61 catalytic", "eco_id": "ECO_0000259", "start_pos": 338, "end_pos": 442, "start_aa": "Asn", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G14843DJ", "type": "O-linked", "subtype": "O-GlcNAc" }, { "glytoucan_ac": "G49108TO", "type": "O-linked", "subtype": "O-GlcNAc" }, { "glytoucan_ac": "G64581RP", "type": "O-linked", "subtype": "O-GlcNAc" }, { "glytoucan_ac": "G66831KA", "type": "O-linked", "subtype": "O-GlcNAc" }, { "glytoucan_ac": "G86089ZC", "type": "O-linked", "subtype": "O-GlcNAc" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 263, "end_pos": 265 }, { "start_pos": 354, "end_pos": 356 }, { "start_pos": 493, "end_pos": 495 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFW7-1", "uniprot_ac": "F1SFW7", "uniprot_id": "F1SFW7_PIG", "mass": { "chemical_mass": 73144.0, "monoisotopic_mass": 73144.0 }, "refseq": { "ac": "XP_005663462", "name": "CREB-regulated transcription coactivator 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663462" }, "gene_names": [ { "name": "CRTC2", "type": "recommended", "evidence": [ { "id": "F1SFW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ] }, { "name": "CRTC2", "type": "synonym", "evidence": [ { "id": "XP_005663462", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663462" } ] } ], "protein_names": [ { "name": "CREB regulated transcription coactivator 2", "type": "synonym", "evidence": [ { "id": "F1SFW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW7/entry#names_and_taxonomy" } ] }, { "name": "CREB-regulated transcription coactivator 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005663462", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663462" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CRTC2", "url": "https://www.uniprot.org/uniprotkb/F1SFW7", "locus": { "chromosome": "4", "start_pos": 95745629, "end_pos": 95734299, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006567", "url": "https://www.ensembl.org/id/ENSSSCG00000006567" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006567", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006567", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519835", "url": "https://www.ncbi.nlm.nih.gov/gene/100519835", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024784", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024784", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024785", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024785", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519835", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519835", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFW7", "url": "https://www.orthodb.org/?gene=F1SFW7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13589", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13589", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13589:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13589:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12884", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12884", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12886", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12886", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663462", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663462", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R2L5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2L5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2L5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSGANGPGSATASASNPRKFSEKIALQKQRQAEETAAFEEVMMDIGSTRLQAQKLRLAYTRSSHYGGSLPNVNQIGCGLAEFQSPLHSPLDSSRSTRHHGLVERVQRDPRRMVSPLRRYPRHIDSSPYSPAYLSPPPESSWRRTMPWGNFPAEKGQLFRLPSALNRTSSDSALHTSVMNPSPQDTYPGPPPPSVLPSRRGGFLDGEMDSKVPAIEENLLDDKHLLKPWDAKKLSSSSSRPRSCEVPGINIFPSPDQPATVPVLPPAMNTGGSLPDLTNLHFPPPLPTPLDPEETAYPSLSGGNSTSNLTHTMTHLGISGGLGLGPGYEAPGLHSPLSHPSLQSSLSNPNLQASLSSPQPQLQGSHSHPSLPASSLARHTLPTASLGHPSLSAPALSSSSSSSSASSPVLGAPPYPASTPGASPRHRRVPLSPLSLPAGPADARRSQQQLPKQFSPTMSPTLSSITQGVPLDTSKLPTDQRLPPYPYSPPSLVLPTQPPTPKPLQQPGLPSQACSVQPSGGQPPGRQLHYGMLYPPGSSGHGQQSYHRPMGDFSLGNLEPFSMDNPSTSLALDASGFSEGPGFLGGEGPVSGPQEPHTLNHQNLTHCSRHGSGPNIILTGESSPGFSKEIAAALAGVPGFEVSTAGLELGLGLEEELRMEPLGLEGLNMLSDPCALLPDPAVEDSFRSDRLQ", "length": 693, "header": "tr|F1SFW7-1|F1SFW7_PIG Isoform 1 of CREB regulated transcription coactivator 2 OS=Sus scrofa OX=9823 GN=CRTC2 PE=3 SV=2 CANONICAL=F1SFW7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R2L5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW7/entry#A0A5G2R2L5-1", "sequence": { "sequence": "MATSGANGPGSATASASNPRKFSEKIALQKQRQASLSSPQPQLQGSHSHPSLPASSLARHTLPTASLGHPSLSAPALSSSSSSSSASSPVLGAPPYPASTPGASPRHRRVPLSPLSLPAGPADARRSQQQLPKQFSPTMSPTLSSITQGVPLDTSKLPTDQRLPPYPYSPPSLVLPTQPPTPKPLQQPGLPSQACSVQPSGGQPPGRQLHYGMLYPPGSSGHGQQSYHRPMGDFSLGNLEPFSMDNPSTSLALDASGFSEGPGFLGGEGPVSGPQEPHTLNHQNLTHCSRHGSGPNIILTGESSPGFSKEIAAALAGVPGFEVSTAGLELGLGLEEELRMEPLGLEGLNMLSDPCALLPDPAVEDSFRSDRLQ", "length": 373, "header": "tr|A0A5G2R2L5-1|F1SFW7_PIG Computationally mapped isoform of CREB regulated transcription coactivator 2 OS=Sus scrofa OX=9823 GN=CRTC2 PE=3 SV=1 CANONICAL=F1SFW7-1" }, "locus": { "chromosome": "4", "start_pos": 95745188, "end_pos": 95734425, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083169.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083169.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064784.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064784.1" } ] } }, { "isoform_ac": "F1SFW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW7/entry#F1SFW7-1", "sequence": { "sequence": "MATSGANGPGSATASASNPRKFSEKIALQKQRQAEETAAFEEVMMDIGSTRLQAQKLRLAYTRSSHYGGSLPNVNQIGCGLAEFQSPLHSPLDSSRSTRHHGLVERVQRDPRRMVSPLRRYPRHIDSSPYSPAYLSPPPESSWRRTMPWGNFPAEKGQLFRLPSALNRTSSDSALHTSVMNPSPQDTYPGPPPPSVLPSRRGGFLDGEMDSKVPAIEENLLDDKHLLKPWDAKKLSSSSSRPRSCEVPGINIFPSPDQPATVPVLPPAMNTGGSLPDLTNLHFPPPLPTPLDPEETAYPSLSGGNSTSNLTHTMTHLGISGGLGLGPGYEAPGLHSPLSHPSLQSSLSNPNLQASLSSPQPQLQGSHSHPSLPASSLARHTLPTASLGHPSLSAPALSSSSSSSSASSPVLGAPPYPASTPGASPRHRRVPLSPLSLPAGPADARRSQQQLPKQFSPTMSPTLSSITQGVPLDTSKLPTDQRLPPYPYSPPSLVLPTQPPTPKPLQQPGLPSQACSVQPSGGQPPGRQLHYGMLYPPGSSGHGQQSYHRPMGDFSLGNLEPFSMDNPSTSLALDASGFSEGPGFLGGEGPVSGPQEPHTLNHQNLTHCSRHGSGPNIILTGESSPGFSKEIAAALAGVPGFEVSTAGLELGLGLEEELRMEPLGLEGLNMLSDPCALLPDPAVEDSFRSDRLQ", "length": 693, "header": "tr|F1SFW7-1|F1SFW7_PIG Isoform 1 of CREB regulated transcription coactivator 2 OS=Sus scrofa OX=9823 GN=CRTC2 PE=3 SV=2 CANONICAL=F1SFW7-1" }, "locus": { "chromosome": "4", "start_pos": 95745188, "end_pos": 95734425, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007195.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007195.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007002.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007002.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 289, "start_aa": "Thr", "end_pos": 289, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr289", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 420, "start_aa": "Thr", "end_pos": 420, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr420", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R2L5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2L5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519835", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519835", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" }, { "name": "protein homotetramerization", "id": "GO:0051289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051289", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" }, { "name": "cellular response to cAMP", "id": "GO:0071320", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071320", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" }, { "name": "gluconeogenesis", "id": "GO:0006094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006094", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" }, { "name": "glucose homeostasis", "id": "GO:0042593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042593", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cAMP response element binding protein binding", "id": "GO:0008140", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008140", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" }, { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SFW7", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 604, "end_pos": 606, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" }, { "id": "PF12886", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12886" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transducer of regulated CREB activity C-terminal", "eco_id": "ECO_0000259", "start_pos": 615, "end_pos": 692, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" }, { "id": "PF12884", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12884" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transducer of regulated CREB activity N-terminal", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 72, "start_aa": "Asn", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW7" }, { "id": "PF12885", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12885" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transducer of regulated CREB activity middle", "eco_id": "ECO_0000259", "start_pos": 168, "end_pos": 321, "start_aa": "Arg", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 289, 420 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 167, "end_pos": 169 }, { "start_pos": 305, "end_pos": 307 }, { "start_pos": 309, "end_pos": 311 }, { "start_pos": 604, "end_pos": 606 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP18-1", "uniprot_ac": "F1SP18", "uniprot_id": "F1SP18_PIG", "mass": { "chemical_mass": 81204.0, "monoisotopic_mass": 81204.0 }, "refseq": {}, "gene_names": [ { "name": "TARS1", "type": "recommended", "evidence": [ { "id": "F1SP18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP18" } ] } ], "protein_names": [ { "name": "threonine--tRNA ligase", "type": "recommended", "evidence": [ { "id": "F1SP18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP18/entry#names_and_taxonomy" } ] }, { "name": "6.1.1.3", "type": "synonym", "evidence": [ { "id": "F1SP18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP18/entry#names_and_taxonomy" } ] }, { "name": "Threonyl-tRNA synthetase", "type": "synonym", "evidence": [ { "id": "F1SP18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP18/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction: threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged tRNA(Thr) via its editing domain, at the post-transfer stage.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4G9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4G9#function" }, { "database": "UniProtKB", "id": "ARBA00058080", "url": "https://www.uniprot.org/uniprotkb/ARBA00058080#function" }, { "database": "UniProtKB", "id": "F1SP18", "url": "https://www.uniprot.org/uniprotkb/F1SP18#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP18", "url": "https://www.uniprot.org/uniprotkb/F1SP18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TARS1", "url": "https://www.uniprot.org/uniprotkb/F1SP18", "locus": { "chromosome": "16", "start_pos": 19486732, "end_pos": 19455092, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016817", "url": "https://www.ensembl.org/id/ENSSSCG00000016817" } ] } } ], "crossref": [ { "id": "F1SP18", "url": "https://alphafold.ebi.ac.uk/entry/F1SP18", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016817", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016817", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00771", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00771", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00860", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00860", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01667", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01667", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004095", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004095", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012676", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012676", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036621", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036621", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045864", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045864", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11451", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11451", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11451:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11451:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00587", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00587", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02824", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02824", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03129", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03129", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07973", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07973", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "24624", "url": "https://www.rhea-db.org/rhea/24624", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R4G9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4G9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP84", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP84-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP84-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP18", "url": "https://www.uniprot.org/uniprotkb/F1SP18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP18-1", "url": "https://www.uniprot.org/uniprotkb/F1SP18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEEKAHSPSGKMGGEEKPVSGQSRLNPWPEYINTRLEMYNKLKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIENGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEIKKETLLEMFKYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKADMETLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIDFIRSEYRKRGFQEVVTPNIYNSRLWVTSGHWQHYSDNMFSFEVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSIFGFSFKLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWELNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTFVSPDGDDKKRPVIIHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVQQQFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSGTVNIRTRDNKVHGERTISETVGRLEQLRQSRSKQAEEEF", "length": 702, "header": "tr|F1SP18-1|F1SP18_PIG Isoform 1 of threonine--tRNA ligase OS=Sus scrofa OX=9823 GN=TARS1 PE=1 SV=5 CANONICAL=F1SP18-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R4G9-1", "url": "https://www.uniprot.org/uniprotkb/F1SP18/entry#A0A5G2R4G9-1", "sequence": { "sequence": "MYNKLKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIENGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEIKKETLLEMFKYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKADMETLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIDFIRSEYRKRGFQEVVTPNIYNSRLWVTSGHWQHYSDNMFSFEVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSIFGFSFKLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWELNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTFVSPDGDDKKRPVIIHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVNFKYSSNSTMLNSWWTSIWIQAVH", "length": 602, "header": "tr|A0A5G2R4G9-1|F1SP18_PIG Computationally mapped isoform of threonine--tRNA ligase OS=Sus scrofa OX=9823 GN=TARS1 PE=1 SV=2 CANONICAL=F1SP18-1" }, "locus": { "chromosome": "16", "start_pos": 19482210, "end_pos": 19463167, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074972.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074972.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071981.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071981.2" } ] } }, { "isoform_ac": "A0A8W4FP84-1", "url": "https://www.uniprot.org/uniprotkb/F1SP18/entry#A0A8W4FP84-1", "sequence": { "sequence": "MSEEKAHSPSGKMGGEEKPVSAAEEKRKEGGKKKNKEGSGDGGRESRPGQHCCC", "length": 54, "header": "tr|A0A8W4FP84-1|F1SP18_PIG Computationally mapped isoform of threonine--tRNA ligase OS=Sus scrofa OX=9823 GN=TARS1 PE=1 SV=1 CANONICAL=F1SP18-1" }, "locus": { "chromosome": "16", "start_pos": 19469978, "end_pos": 19455451, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100230.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100230.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080115.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080115.1" } ] } }, { "isoform_ac": "F1SP18-1", "url": "https://www.uniprot.org/uniprotkb/F1SP18/entry#F1SP18-1", "sequence": { "sequence": "MSEEKAHSPSGKMGGEEKPVSGQSRLNPWPEYINTRLEMYNKLKAEHDSILAEKAEKDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKVVWDLDRPLEEDCTLELLKFEDEEAQAVYWHSSAHIMGEAMERVYGGCLCYGPPIENGFYYDMYLEEGGVSSNDFSSLEALCKKIIKEKQAFERLEIKKETLLEMFKYNKFKCRILNEKVNTPTTTVYRCGPLIDLCRGPHVRHTGKIKTLKIHKNSSTYWEGKADMETLQRIYGISFPDPKMLKEWEKFQEEAKNRDHRKIGRDQELYFFHELSPGSCFFLPKGAYIYNTLIDFIRSEYRKRGFQEVVTPNIYNSRLWVTSGHWQHYSDNMFSFEVEKELFALKPMNCPGHCLMFDHRPRSWRELPLRIADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCAMEQIEDEIKGCLDFLRTVYSIFGFSFKLNLSTRPEKFLGDIEVWNQAEKQLENSLNEFGEKWELNPGDGAFYGPKIDIQIKDAIGRYHQCATIQLDFQLPIRFNLTFVSPDGDDKKRPVIIHRAILGSVERMIAILTENYGGKWPFWLSPRQVMVVPVGPTCDEYAQKVQQQFHDAKFMVDIDLDPGCTLNKKIRNAQLAQYNFILVVGEKEKSSGTVNIRTRDNKVHGERTISETVGRLEQLRQSRSKQAEEEF", "length": 702, "header": "tr|F1SP18-1|F1SP18_PIG Isoform 1 of threonine--tRNA ligase OS=Sus scrofa OX=9823 GN=TARS1 PE=1 SV=5 CANONICAL=F1SP18-1" }, "locus": { "chromosome": "16", "start_pos": 19482821, "end_pos": 19455451, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018310.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018310.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017815.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017815.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 608, "start_aa": "Thr", "end_pos": 608, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr608", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FP84", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP84" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SP18", "url": "https://www.uniprot.org/uniprotkb/F1SP18" } ], "pmid": "" }, { "name": "threonine-tRNA ligase activity", "id": "GO:0004829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004829", "evidence": [ { "database": "UniProtKB", "id": "F1SP18", "url": "https://www.uniprot.org/uniprotkb/F1SP18" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SP18", "url": "https://www.uniprot.org/uniprotkb/F1SP18" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SP18", "url": "https://www.uniprot.org/uniprotkb/F1SP18" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SP18", "url": "https://www.uniprot.org/uniprotkb/F1SP18" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "threonyl-tRNA aminoacylation", "id": "GO:0006435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006435", "evidence": [ { "database": "UniProtKB", "id": "F1SP18", "url": "https://www.uniprot.org/uniprotkb/F1SP18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 476, "end_pos": 478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "24624", "name": "", "equation": "tRNA(Thr) + L-threonine + ATP = L-threonyl-tRNA(Thr) + AMP + diphosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "24624", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/24624" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP18-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 702, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP18-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP18" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP18" }, { "id": "PS50862", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50862" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aminoacyl-transfer RNA synthetases class-II family profile", "eco_id": "ECO_0000259", "start_pos": 326, "end_pos": 592, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SP18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP18" }, { "id": "PS51880", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51880" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TGS", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 122, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 608 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 259, "end_pos": 261 }, { "start_pos": 476, "end_pos": 478 }, { "start_pos": 551, "end_pos": 553 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHV8-1", "uniprot_ac": "F1SHV8", "uniprot_id": "F1SHV8_PIG", "mass": { "chemical_mass": 123477.0, "monoisotopic_mass": 123477.0 }, "refseq": { "ac": "XP_020934691", "name": "ubiquitin-protein ligase E3C isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934691" }, "gene_names": [ { "name": "UBE3C", "type": "recommended", "evidence": [ { "id": "F1SHV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHV8" } ] }, { "name": "UBE3C", "type": "synonym", "evidence": [ { "id": "XP_020934691", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934691" } ] } ], "protein_names": [ { "name": "Ubiquitin-protein ligase E3C", "type": "recommended", "evidence": [ { "id": "F1SHV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.26", "type": "synonym", "evidence": [ { "id": "F1SHV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#names_and_taxonomy" } ] }, { "name": "HECT-type ubiquitin transferase E3C", "type": "synonym", "evidence": [ { "id": "F1SHV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#names_and_taxonomy" } ] }, { "name": "RTA-associated ubiquitin ligase", "type": "synonym", "evidence": [ { "id": "F1SHV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin-protein ligase E3C isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020934691", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934691" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHV8", "url": "https://www.uniprot.org/uniprotkb/F1SHV8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBE3C", "url": "https://www.uniprot.org/uniprotkb/F1SHV8", "locus": { "chromosome": "18", "start_pos": 1542163, "end_pos": 1653982, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016409", "url": "https://www.ensembl.org/id/ENSSSCG00000016409" } ] } } ], "crossref": [ { "id": "F1SHV8", "url": "https://alphafold.ebi.ac.uk/entry/F1SHV8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016409", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016409", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00078", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00078", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511906", "url": "https://www.ncbi.nlm.nih.gov/gene/100511906", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EKHYYFI", "url": "https://omabrowser.org/oma/group/EKHYYFI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHV8", "url": "https://www.orthodb.org/?gene=F1SHV8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45700", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45700", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45700:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45700:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00632", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00632", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020934691", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934691", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2Q932", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q932", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q932-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q932-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7C4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7C4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7C4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7C4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7S0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7S0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCZ1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHV8", "url": "https://www.uniprot.org/uniprotkb/F1SHV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERRRLKNAIIIQSFIRGYRDRKQQCSTQRSAFDRCANLSQAGGAFSIASGPNLTLLVRQLLFFYRQSEDSQRLIWMYQNLIKHSSLFVQQLDGSERLTCLFQIKRLMSLCCRLLQSCNDDSLNVALPMRMLEVFSSENTYLPVLRDASYVVSVVEQILHYMIQNGYYRSLYLLINSKLPSSIEYSDISRVPIAKILLENVLKPLHFTYNSCPEGARQQVFTAFTKEVLAAPFTEQVFRFVIPALADAQTLFPYEPFLNALVSAERRGPEASAGAPWLFYFVLTVGENYLGTLSEDGLLVYLRVLQAFLAQLPVSAAGTSCQDSASDSEDESEETDKQPNTPEGGRLSVPYITEECLKKLDTKQQTNTLLNLVWRDSASEEAFTLMAAVCHTLMVQHRVMVPKARLLYSLAFNARFLRHLWFLISSMTTRMITGSVVPLLQVMSRGSPMSFEDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVAGQRPSSMMPFTLEELVMLSRCLRDACLGIIKLAYPETKPEVREEYVTAFQSVGVTTNSEMQQCIQMEQKRWIQLFKVITNLVKMLKSRDTRRNFCPPNHWLSEQEDIKADKVTQLYVPASRNAWRSRRMGRIGPLRSTLDVGVESPPLSVSEERQLAVLTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEGLLYPNPAAHMLVGDSFARHYYFLGRMLGKALYENMLVELPFASFFLSKLLGTSADVDIHHLASLDPEVYRNLLFLKSYEGDVEELGLNFTVVNNDLGEAQVVELKYGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLAFRQGLANVLNLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHPVIRAFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHNGGSDLERLPTASTCMNLLKLPEFHDEALLRSKLLYAIECAAGFELS", "length": 1084, "header": "tr|F1SHV8-1|F1SHV8_PIG Isoform 1 of Ubiquitin-protein ligase E3C OS=Sus scrofa OX=9823 GN=UBE3C PE=1 SV=3 CANONICAL=F1SHV8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q932-1", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#A0A5G2Q932-1", "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASRKVRAACVRRRLGEERRRLKNAIIIQSFIRGYRDRKQQCSTQRSAFDRCANLSQAGGAFSIASGPNLTLLVRQLLFFYRQSEDSQRLIWMYQNLIKHSSLFVQQLDGSERLTCLFQIKRLMSLCCRLLQSCNDDSLNVALPMRMLEVFSSENTYLPVLRDASYVVSVVEQILHYMIQNGKSGSASLWDGTAAGSPLRTCCATLCLTCPVALKQQVFTAFTKEVLAAPFTEQVFRFVIPALADAQTLFPYEPFLNALVSAERRGPEASAGAPWLFYFVLTVGENYLGTLSEDGLLVYLRVLQAFLAQLPVSAAGTSCQDSASDSEDESEETDKQPNTPEGGRLSVPYITEECLKKLDTKQQTNTLLNLVWRDSASEEAFTLMAAVCHTLMVQHRVMVPKARLLYSLAFNARFLRHLWFLISSMTTRMITGSVVPLLQVMSRGSPMSFEDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVAGQRPSSMMPFTLEELVMLSRCLRDACLGIIKLAYPETKPEVREEYVTAFQSVGVTTNSEMQQCIQMEQKRWIQLFKVITNLVKMLKSRDTRRNFCPPNHWLSEQEDIKADKVTQLYVPASRNAWRSRRMGRIGPLRSTLDVGVESPPLSVSEERQLAVLTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEGLLYPNPAAHMLVGDSFARHYYFLGRMLGKALYENMLVELPFASFFLSKLLGTSADVDIHHLASLDPEVYRNLLFLKSYEGDVEELGLNFTVVNNDLGEAQVVELKYGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLAFRQGLANVLNLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGTLSLLVADSWECHRRSCSPTCFFFFLFPPSFCPFRAAPAAYGGSQARGRIGAVAAGLRQSHSHAGSEPCLQLTPQLTATPDP", "length": 1042, "header": "tr|A0A5G2Q932-1|F1SHV8_PIG Computationally mapped isoform of Ubiquitin-protein ligase E3C OS=Sus scrofa OX=9823 GN=UBE3C PE=1 SV=2 CANONICAL=F1SHV8-1" }, "locus": { "chromosome": "18", "start_pos": 1653961, "end_pos": 1560496, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080994.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080994.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060777.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060777.2" } ] } }, { "isoform_ac": "A0A5G2QPT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#A0A5G2QPT5-1", "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASRKCSTQRSAFDRCANLSQAGGAFSIASGPNLTLLVRQLLFFYRQSEDSQRLIWMYQNLIKHSSLFVQQLDGSERLTCLFQIKRLMSLCCRLLQSCNDDSLNVALPMRMLEVFSSENTYLPVLRDASYVVSVVEQILHYMIQNGYYRSLYLLINSKLPSSIEYSDISRVPIAKILLENVLKPLHFTYNSCPEGARQQVFTAFTKEVLAAPFTEQVFRFVIPALADAQTLFPYEPFLNALVSAERRGPEASAGAPWLFYFVLTVGENYLGTLSEDGLLVYLRVLQAFLAQLPVSAAGTSCQDSASDSEDESEETDKQPNTPEGGRLSVPYITEECLKKLDTKQQTNTLLNLVWRDSASEEAFTLMAAVCHTLMVQHRVMVPKARRHRG", "length": 406, "header": "tr|A0A5G2QPT5-1|F1SHV8_PIG Computationally mapped isoform of Ubiquitin-protein ligase E3C OS=Sus scrofa OX=9823 GN=UBE3C PE=1 SV=1 CANONICAL=F1SHV8-1" }, "locus": { "chromosome": "18", "start_pos": 1653961, "end_pos": 1610682, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078045.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078045.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066071.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066071.1" } ] } }, { "isoform_ac": "A0A5G2R7C4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#A0A5G2R7C4-1", "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERRRLKNAIIIQSFIRGYRDRKQQCSTQRSAFDRCANLSQAGGAFSIASGPNLTLLVRQLLFFYRQSEDSQRLIWMYQNLIKHSSLFVQQLDGSERLTCLFQIKRLMSLCCRLLQSCNDDSLNVALPMRMLEVFSSENTYLPVLRDASYVVSVVEQILHYMIQNGYYRSLYLLINSKLPSSIEYSDISRVPIAKILLENVLKPLHFTYNSCPEGARQQVFTAFTKEVLAAPFTEQVFRFVIPALADAQTLFPYEPFLNALVSAERRGPEASAGAPWLFYFVLTVGENYLGTLSEDGLLVYLRVLQAFLAQLPVSAAGTSCQDSASDSEDESEETDKQPNTPEGGRLSVPYITEECLKKLDTKQQTNTLLNLVWRDSASEEAFTLMAAVCHTLMVQHRVMVPKARLLYSLAFNARFLRHLWFLISSMTTRMITGSVVPLLQVMSRGSPMSFEDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVAGQRPSSMMPFTLEELVMLSRCLRDACLGIIKLAYPETKPEVREEYVTAFQSVGVTTNSEMQQCIQMEQKRWIQLFKVITNLVKMLKSRDTRRNFCPPNHWLSEQEDIKADKVTQLYVPASRNAWRSRRMGRIGPLRSTLDVGVESPPLSVSEERQLAVLTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEGLLYPNPAAHMLVGDSFARHYYFLGRMLGKALYENMLVELPFASFFLSKLLGTSADVDIHHLASLDPEVYRNLLFLKSYEGDVEELGLNFTVVNNDLGEAQVVELKYGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLAFRQGLANVLNLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGTLSLLVADSWECHRRSCSPTCFFFFLFPPSFCPFRAAPAAYGGSQARGRIGAVAAGLRQSHSHAGSEPCLQLTPQLTATPDP", "length": 1067, "header": "tr|A0A5G2R7C4-1|F1SHV8_PIG Computationally mapped isoform of Ubiquitin-protein ligase E3C OS=Sus scrofa OX=9823 GN=UBE3C PE=1 SV=1 CANONICAL=F1SHV8-1" }, "locus": { "chromosome": "18", "start_pos": 1653961, "end_pos": 1560496, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081935.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081935.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073147.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073147.1" } ] } }, { "isoform_ac": "A0A8W4F7S0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#A0A8W4F7S0-1", "sequence": { "sequence": "TGEFLGCVCVSLQCSTQRSAFDRCANLSQAGGAFSIASGPNLTLLVRQLLFFYRQSEDSQRLIWMYQNLIKHSSLFVQQLDGSERLTCLFQIKRLMSLCCRLLQSCNDDSLNVALPMRMLEVFSSENTYLPVLRDASYVVSVVEQILHYMIQNGKSGSASLWDGTAAGSPLRTCCATLCLTCPVALKQQVFTAFTKEVLAAPFTEQVFRFVIPALADAQTLFPYEPFLNALVSAERRGPEASAGAPWLFYFVLTVGENYLGTLSEDGLLVYLRVLQAFLAQLPVSAAGTSCQDSASDSEDESEETDKQPNTPEGGRLSVPYITEECLKKLDTKQQTNTLLNLVWRDSASEEAFTLMAAVCHTLMVQHRVMVPKARRHRGIWKPLLH", "length": 386, "header": "tr|A0A8W4F7S0-1|F1SHV8_PIG Computationally mapped isoform of Ubiquitin-protein ligase E3C OS=Sus scrofa OX=9823 GN=UBE3C PE=1 SV=1 CANONICAL=F1SHV8-1" }, "locus": { "chromosome": "18", "start_pos": 1630395, "end_pos": 1610661, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096618.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096618.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074818.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074818.1" } ] } }, { "isoform_ac": "A0A8W4FCZ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#A0A8W4FCZ1-1", "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASRKCSTQRSAFDRCANLSQAGGAFSIASGPNLTLLVRQLLFFYRQSEDSQRLIWMYQNLIKHSSLFVQQLDGSERLTCLFQIKRLMSLCCRLLQSCNDDSLNVALPMRMLEVFSSENTYLPVLRDASYVVSVVEQILHYMIQNGYYRSLYLLINSKLPSSIEYSDISRVPIAKILLENVLKPLHFTYNSCPEGARQQVFTAFTKEVLAAPFTEQVFRFVIPALADAQTLFPYEPFLNALVSAERRGPEASAGAPWLFYFVLTVGENYLGTLSEDGLLVYLRVLQAFLAQLPVSAAGTSCQDSASDSEDESEETDKQPNTPEGGRLSVPYITEECLKKLDTKQQTNTLLNLVWRDSASEEAFTLMAAVCHTLMVQHRVMVPKARRVSA", "length": 406, "header": "tr|A0A8W4FCZ1-1|F1SHV8_PIG Computationally mapped isoform of Ubiquitin-protein ligase E3C OS=Sus scrofa OX=9823 GN=UBE3C PE=1 SV=1 CANONICAL=F1SHV8-1" }, "locus": { "chromosome": "18", "start_pos": 1653961, "end_pos": 1611964, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101029.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101029.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077134.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077134.1" } ] } }, { "isoform_ac": "F1SHV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHV8/entry#F1SHV8-1", "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERRRLKNAIIIQSFIRGYRDRKQQCSTQRSAFDRCANLSQAGGAFSIASGPNLTLLVRQLLFFYRQSEDSQRLIWMYQNLIKHSSLFVQQLDGSERLTCLFQIKRLMSLCCRLLQSCNDDSLNVALPMRMLEVFSSENTYLPVLRDASYVVSVVEQILHYMIQNGYYRSLYLLINSKLPSSIEYSDISRVPIAKILLENVLKPLHFTYNSCPEGARQQVFTAFTKEVLAAPFTEQVFRFVIPALADAQTLFPYEPFLNALVSAERRGPEASAGAPWLFYFVLTVGENYLGTLSEDGLLVYLRVLQAFLAQLPVSAAGTSCQDSASDSEDESEETDKQPNTPEGGRLSVPYITEECLKKLDTKQQTNTLLNLVWRDSASEEAFTLMAAVCHTLMVQHRVMVPKARLLYSLAFNARFLRHLWFLISSMTTRMITGSVVPLLQVMSRGSPMSFEDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVAGQRPSSMMPFTLEELVMLSRCLRDACLGIIKLAYPETKPEVREEYVTAFQSVGVTTNSEMQQCIQMEQKRWIQLFKVITNLVKMLKSRDTRRNFCPPNHWLSEQEDIKADKVTQLYVPASRNAWRSRRMGRIGPLRSTLDVGVESPPLSVSEERQLAVLTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEGLLYPNPAAHMLVGDSFARHYYFLGRMLGKALYENMLVELPFASFFLSKLLGTSADVDIHHLASLDPEVYRNLLFLKSYEGDVEELGLNFTVVNNDLGEAQVVELKYGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLAFRQGLANVLNLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHPVIRAFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHNGGSDLERLPTASTCMNLLKLPEFHDEALLRSKLLYAIECAAGFELS", "length": 1084, "header": "tr|F1SHV8-1|F1SHV8_PIG Isoform 1 of Ubiquitin-protein ligase E3C OS=Sus scrofa OX=9823 GN=UBE3C PE=1 SV=3 CANONICAL=F1SHV8-1" }, "locus": { "chromosome": "18", "start_pos": 1653961, "end_pos": 1543780, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017866.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017866.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017385.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017385.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A0X2-1", "protein_name": "Ubiquitin-protein ligase E3C", "gene_name": "UBE3C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASKKEEKASLLHRTQEERRKREEERRRLKNAIIIQSFVRGYRDRNHQYSTQRSEFDRCANLAQSGGTFSTANGANLTLLVRQLLFFYRQNEDSKRLIWMCQNLIKQSSQFVKQLDGPDRLTCLFQIKRLLGLCCRLLQNCNDDSLNVALPMRMLEVFSSENTYLPVLQDVSYVTSLIEQILHYMIQKGYYRSLYLLINSKLPSSIEYSDVSRVPLAKILLENVLKPLHFTYSSCPEGARQQIFAAFTEEFVAAPFTDQIFHFIIPALADVQIVFPYEFFLNALLLAENGCSRKSDRAPWLFYFVLTVGETYLGSLSEEGLLVYLRVLQAFLSQLPVSSAGTSCQDANSDSEDEDEEISKMTTTPGDGRISVQYITEECLKKLDTKQQTNTLLNMVWRDSASEEVFTLMASICHTLMVQHRMMVPKVRLLYSLAFNARFLRHLWYLISSMTTRMITGSMVPLLQVISRGSPMSLDDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVVGQRQSSMMPFTLEELVILSRCLRDACLGIIKLAYPETKPEVREEYIAAFRSVGVTKNTEMQQCIQTEQKRWIQLFKVITNLVKMLKARDTRRNFCPPNHWLSEQENIKADKVTQLYVPSARHVWRVRRMGRIGPLQSTLDVGLEPAPLSVSEERQLAILTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEGLLYPNPAAQMLVGDSYARHYYFLGRMLGKALYENMLVELPFASFFLSKLLGTSADVDIHHLASLDPEMYKNLLFLKSYEGDVEELGLNFTVVNNDLGEAQVVELKPGGKDIPVTSANRIAYIHLVADYRLNKQIRQHCLAFRQGLANVVNLEWLRMFDQQEIQVLISGAQVPISLDDLKSFTNYSGGYAADHPVIKTFWRVVERFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHNGGSDLDRLPTASTCMNLLKLPEFYDENLMRSKLLYAIECAAGFELS", "length": 1084 }, "evidence": [ { "id": "F1SHV8", "url": "https://omabrowser.org/oma/group/F1SHV8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZHB7-1", "protein_name": "Ubiquitin-protein ligase E3C", "gene_name": "Ube3c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERRRLKNAVIIQSFIRGYRDRKQQYFTQRSAFDQCADSAQPGGTFRIADGPALTLLVRQLLFFYKQSEDSKRLIWLYQNLIKHSSLFVKQLDGSERLTCLFQLKRLMSLCCRLLQNCSDDSLNVALPMRMLEVFSSENTYLPVLQDSSYVVSVIEQILHYMVHSGYYRSLYLLINSKLPSSIEYSDLSRVPMAKTLLENVLKPLHFTYSSCPEGARHQVFSAFTEEFLGAPFTDQIYHFIIPALADTQTVFPYEPFLNALLLLESRSSKRSSGVPWLFYFVLTIGENYLGALSEDGLLVYLRVLQTFLSQLPASPTGVGRPDPTSDSEDDNEETDQPTSPEDGRVSAPYITEECLRKLDTKQQTNTLLNLVWRDSASEEVFTRMASICHTLMVQHRMMVPKVRLLYSLAFNARFLRHLWFLISSMTTQMITGSMVPLLQVISRGSPMSFEDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVVGQRQLSMMPFTLEELILLSRCLRDACLGIIKLAYPETKPEVREEYVSAFQSIGVTTNSEMQHCIQMEQKRWVQLFKVITNLVKMLKSRDTRRNFCPPNHWLSEQEDIKADKVTQLYVPASRHVWRFRRMGRIGPLQSTLEVGLESPPLSVSEERQLAILTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEGLLYPNPAAQMLVGDSFARHYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADVDIHHLASLDPEVYKNLLFLKSYEEDVEELGLNFTVVNNDLGEAQVVELKFGGKDIPVTGANRIAYIHLVADYRLNKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVSLEDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHNGGSDLERLPTASTCMNLLKLPEFYDEALLRSKLLYAIECAAGFELS", "length": 1083 }, "evidence": [ { "id": "F1SHV8", "url": "https://omabrowser.org/oma/group/F1SHV8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q15386-1", "protein_name": "Ubiquitin-protein ligase E3C", "gene_name": "UBE3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERRRLKNAIIIQSFIRGYRDRKQQYSIQRSAFDRCATLSQSGGAFPIANGPNLTLLVRQLLFFYKQNEDSKRLIWLYQNLIKHSSLFVKQLDGSERLTCLFQIKRLMSLCCRLLQNCNDDSLNVALPMRMLEVFSSENTYLPVLQDASYVVSVIEQILHYMIHNGYYRSLYLLINSKLPSSIEYSDLSRVPIAKILLENVLKPLHFTYNSCPEGARQQVFTAFTEEFLAAPFTDQIFHFIIPALADAQTVFPYEPFLNALLLIESRCSRKSGGAPWLFYFVLTVGENYLGALSEEGLLVYLRVLQTFLSQLPVSPASASCHDSASDSEEESEEADKPSSPEDGRLSVSYITEECLKKLDTKQQTNTLLNLVWRDSASEEVFTTMASVCHTLMVQHRMMVPKVRLLYSLAFNARFLRHLWFLISSMSTRMITGSMVPLLQVISRGSPMSFEDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVVGQRQSSMMPFTLEELIMLSRCLRDACLGIIKLAYPETKPEVREEYITAFQSIGVTTSSEMQQCIQMEQKRWIQLFKVITNLVKMLKSRDTRRNFCPPNHWLSEQEDIKADKVTQLYVPASRHVWRFRRMGRIGPLQSTLDVGLESPPLSVSEERQLAVLTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEGLLYPNPAAQMLVGDSFARHYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADVDIHHLASLDPEVYKNLLFLKSYEDDVEELGLNFTVVNNDLGEAQVVELKFGGKDIPVTSANRIAYIHLVADYRLNRQIRQHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPISLEDLKSFTNYSGGYSADHPVIKVFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHNGGSDLERLPTASTCMNLLKLPEFYDETLLRSKLLYAIECAAGFELS", "length": 1083 }, "evidence": [ { "id": "F1SHV8", "url": "https://omabrowser.org/oma/group/F1SHV8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LY19-1", "protein_name": "Ubiquitin-protein ligase E3C", "gene_name": "ube3c", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFSFEGDFRRTPKVSLGGASRKEEKASLLHRTQEERRKREDERKRLKNAIIIQSYIRGYQDRKQQYAIQRGSFDHCVCQCQSGSGPQLTDSAILSQLVRQLLFFYRLSEDRPRMIWMCQCLVKHHAQFVKLLTGPERQICLFQIKRLLGHCCRLLQSCEDDSLNVAVPMRMLEVFSSERTYLPFLQDENCVTSLIEQILHYMVQKGFYRSLYVLVNHKLPSSLEYSDTPSIPLAQTLLEHTLKPLHFTYSSCPPDTRQFVFSAFTEEFISAPFTEQIYHFFVPALSDPKLAFPFQNFLWSLQATIASSVQARTQAPWLFYFVLSVGESGLSSLSEEGLLLYLNALQTLLPLLPVTECNSRADINSDSEDEEEMTVQHPAAPDGSWISVHYITEECVQKLDTKQQTNALLTLVWRDSASEDVFTMMASICHTLMVQHRMMVPRVRLLYSLAFNARFLRHLWYLITSMKTKMITGSMVPLLQVMSRGSPMTLEDSNRIIPLFYLFSSLFSHSLISVHDSEFFGSSADGQSQSSMMPFSLGELVTLSRCLRDACLGIIKLAYPETKTEHKEEYVAAFRSVGVKTNSQVQQRIQAQQKRWVQLFKVITNLVKMLKARDIRRPFCPSGHWLSDEVNIRADKVTQLYVPSARHMWRTRRMGRIGPLQSTLDVGLEPPPLSVSEERHLAILTELPFVVPFEERVKIFQKLIYADKREVQGEGPFLDGVNVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEGLLYPSPTAEMLVGESFTRHYYFLGRILGKALYENMLVELPFASFFLSKLLGTSADVDIHHLASLDPEMYRNLLFLKSYEGDVEDLGLNFTVVNNDLGEAQVVELKPGGKDIPVTTANRIAYIHLVADYRLNKQIRAHCLAFRQGLANVVNLEWLRMFDQQEIQVLVSGAHVPICLEDLKRFTNYSGGYSATHPVIKIFWDVVESFSDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHNGGTDLERLPTASTCMNLLKLPEFCDPQLMRNKLLYAIESSAGFELS", "length": 1081 }, "evidence": [ { "id": "F1SHV8", "url": "https://omabrowser.org/oma/group/F1SHV8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80U95-1", "protein_name": "Ubiquitin-protein ligase E3C", "gene_name": "Ube3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSFEGDFKTRPKVSLGGASRKEEKASLLHRTQEERRKREEERRRLKNAVIIQSFIRGYRDRKQQYFIQRSAFDQCTDSAQPGGTFCLADGPNLTLLVRQLLFFYKQSEDSKRLIWLYQNLIKHSSLFVKQLDGSERLTCLFQIKRLMSLCCRLLQNCSDDSLNVALPMRMLEVFTSENTYLPVLQDSSYVVSVIEQILHYMVHSGYYRSLYLLINSKLPSSIEYSDLSRVPIAKILLENVLKPLHFTYSSCPEASRHQVFSAFTEEFLGAPFTDQIFHFVIPAFADAQTVFPYEPFLNALLLLESQSSKRCSGVPWLFYFVLTVGENYLGALSEDGLLVYLRVLQTFLSQLPASPTGTGCPDSTSDSEDDNEETDQPNSPEDGRVSAPYITEECLRKLDTKQQTNTLLNLVWRDSASEEVFTRMASICHTLMVQHRMMVPKVRLLYSLAFNARFLRHLWFLISSMTTQMITGSMVPLLQLISRGSPMSFEDSSRIIPLFYLFSSLFSHSLISIHDNEFFGDPIEVVGQRQSSMMPFTLEELILLSRCLRDACLGIIKLAYPETKPEVREEYVTAFQSIGVTTNSEMQQCIQMEQKRWVQLFKVITNLVKMLKSRDTRRNFCPPNHWLSEQEDIKADKVTQLYVPASRHVWRFRRMGRIGPLQSTLEVGLESLPLSVSEERQLAILTELPFVVPFEERVKIFQRLIYADKQEVQGDGPFLDGINVTIRRNYIYEDAYDKLSPENEPDLKKRIRVHLLNAHGLDEAGIDGGGIFREFLNELLKSGFNPNQGFFKTTNEGLLYPNPAAQMLVGDSFARHYYFLGRMLGKALYENMLVELPFAGFFLSKLLGTSADVDIHHLASLDPEVYRNLLFLKSYEEDVEELGLNFTVVNNDLGEAQVVELKFGGKDIPVTGANRIAYIHLVADYRLNKQIRPHCLAFRQGLANVVSLEWLRMFDQQEIQVLISGAQVPVSLEDLKSFTNYSGGYSADHPVIKIFWRVVEGFTDEEKRKLLKFVTSCSRPPLLGFKELYPAFCIHNGGSDLERLPTASTCMNLLKLPEFYDEALLRSKLLYAIECAAGFELS", "length": 1083 }, "evidence": [ { "id": "F1SHV8", "url": "https://omabrowser.org/oma/group/F1SHV8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W196-1", "protein_name": "Ubiquitin-protein ligase E3C", "gene_name": "Dmel\\CG3356", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFGFDGEYRRRPVQSLGGASHTCDRDTVIRKAALERQKRNELRQKENGAVVLQSYARSFIHRQRRKRAEREVFDIYLMGHKDGIVEDESLTFLLRRLNFFYSIREAKDSERLIEVCQQILRQPARLLQHSSPDSLWLLRLCKLLDTCLLQLSLSHTAQAIPLRMLETFTTVSSVQQYMKDEAVLFQYMERVFGFLIARNYFVRLRRLLDDKCPPLDGETLHAPSPLAEALLQLLLRPLEVAKRASAGGQMSSMSMAVCRNFTRDILATPHTDPLRYFVLPCFALNVDFPFDLLMRSLYDALESAGPAESDSTSSRRSFLFYGVETGHKTTRMDSIFSSFLLNSLMVLDRRQLATLHQSPLLVIYVRLIAEMMPNILQLPKSTLRGHANAPHRHRDGDDDSEESEDEDEELPAARTLDYDMEQTCRTSGELSVKERECLLESIAILNETERVDFIVQQLDPHIENTHLIYALCEICHNLMIYNKHAVFEYKLLYTLAFTPKFIRAVWFKLAAESTQLGFSAPLTLISKGVVPKHQGVDRTIPLLATFCMLFGRLLPTLHDVEFVENKLLLQVHSTINHVRLMPFSIAEIIQMSKTLKDISMGLVELAFPETRSNLANYRKVLGHTEADDKKLRHQKQIWANLLNVVVFVLNQIHTRDLRLGFCPEDHWTVTRLDLPLDRPTDLPLTHSSRLRGIRPFQPIRDFTREDFENGPPMSTKQIRSITILREIPFVVPFNKRVSILQSLVAASKMRVQGNMQAFLQGPSVLITVRRSHLYEDAYDKLRPDNEPDLRFKFRIQFVSSLGLDEAGIDGGGVFREFLSELIKTAFDPNRGFFMVTTDNKLYPNPNVADLFEDYEKHYYFIGRILGKSIYENLLVELPLAEFFLTKLAGKYSDVDIHQLASLDPELYRNLLYLKDYSGDVSELNLDFTVASSSLGQTQIVELKPQGQSIPVTNSNRIEYLQLIADYKLNVQIRRHCNAFRKGLSNVLPIEWLYMFSNKELQILISGAEIPIDLEDLKKHCEYGGEFSPEHPSIVTFWEVLEGFDDMQRRQLLKFVTSCSRPPLLGFKDLDPPFFIQNTGDMERLPTASTCTNLLKLPPFKTVEQMREKLLYAIQSGAGFELS", "length": 1122 }, "evidence": [ { "id": "F1SHV8", "url": "https://omabrowser.org/oma/group/F1SHV8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SHV8", "url": "https://www.uniprot.org/uniprotkb/F1SHV8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "F1SHV8", "url": "https://www.uniprot.org/uniprotkb/F1SHV8" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "F1SHV8", "url": "https://www.uniprot.org/uniprotkb/F1SHV8" } ], "pmid": "" }, { "name": "protein K48-linked ubiquitination", "id": "GO:0070936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070936", "evidence": [ { "database": "UniProtKB", "id": "F1SHV8", "url": "https://www.uniprot.org/uniprotkb/F1SHV8" } ], "pmid": "" }, { "name": "protein K29-linked ubiquitination", "id": "GO:0035519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035519", "evidence": [ { "database": "UniProtKB", "id": "F1SHV8", "url": "https://www.uniprot.org/uniprotkb/F1SHV8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 725, "end_pos": 727, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" }, { "start_pos": 887, "end_pos": 889, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" }, { "start_pos": 982, "end_pos": 984, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983147", "name": "Release of E3 from polyubiquitinated substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHV8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1084, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHV8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHV8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHV8" }, { "id": "PS50237", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50237" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HECT", "eco_id": "ECO_0000259", "start_pos": 745, "end_pos": 1084, "start_aa": "Asn", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 725, "end_pos": 727 }, { "start_pos": 78, "end_pos": 80 }, { "start_pos": 887, "end_pos": 889 }, { "start_pos": 93, "end_pos": 95 }, { "start_pos": 982, "end_pos": 984 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGC6-1", "uniprot_ac": "F1SGC6", "uniprot_id": "F1SGC6_PIG", "mass": { "chemical_mass": 21554.0, "monoisotopic_mass": 21554.0 }, "refseq": { "ac": "XP_003132594", "name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132594" }, "gene_names": [ { "name": "NDUFB5", "type": "recommended", "evidence": [ { "id": "F1SGC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ] }, { "name": "NDUFB5", "type": "synonym", "evidence": [ { "id": "XP_003132594", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132594" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SGC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGC6/entry#names_and_taxonomy" } ] }, { "name": "Complex I-SGDH", "type": "synonym", "evidence": [ { "id": "F1SGC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGC6/entry#names_and_taxonomy" } ] }, { "name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003132594", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132594" } ] }, { "name": "NADH-ubiquinone oxidoreductase SGDH subunit", "type": "synonym", "evidence": [ { "id": "F1SGC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGC6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V496", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V496#function" }, { "database": "UniProtKB", "id": "ARBA00003195", "url": "https://www.uniprot.org/uniprotkb/ARBA00003195#function" }, { "database": "UniProtKB", "id": "A0A5G2R7U1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7U1#function" }, { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFB5", "url": "https://www.uniprot.org/uniprotkb/F1SGC6", "locus": { "chromosome": "13", "start_pos": 117678509, "end_pos": 117656503, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011764", "url": "https://www.ensembl.org/id/ENSSSCG00000011764" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011764", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011764", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523751", "url": "https://www.ncbi.nlm.nih.gov/gene/100523751", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "5GPN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GPN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GUP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V30&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V33&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V3M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VC0&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VWL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY9&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYE&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYG&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZ8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W00&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1T&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1V&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1Z&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W20&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W35&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4J&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4N&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4Q&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UD1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UD1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UER", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UER&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UES", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UES&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UET", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UET&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEX", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEX&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEY", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEY&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZO8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZOU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZP8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSK&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSM&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZXZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BUH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BWD&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BXV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CD6&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CDN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CE2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6W&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR019173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523751", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523751", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HHHMTIK", "url": "https://omabrowser.org/oma/group/HHHMTIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R7U1", "url": "https://www.orthodb.org/?gene=A0A5G2R7U1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SGC6", "url": "https://www.orthodb.org/?gene=F1SGC6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13178", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13178", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13178:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13178:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005gpn", "url": "https://www.rcsb.org/structure/pdb_00005gpn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005gup", "url": "https://www.rcsb.org/structure/pdb_00005gup", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2c", "url": "https://www.rcsb.org/structure/pdb_00007v2c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2d", "url": "https://www.rcsb.org/structure/pdb_00007v2d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2e", "url": "https://www.rcsb.org/structure/pdb_00007v2e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2f", "url": "https://www.rcsb.org/structure/pdb_00007v2f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2h", "url": "https://www.rcsb.org/structure/pdb_00007v2h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2k", "url": "https://www.rcsb.org/structure/pdb_00007v2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2r", "url": "https://www.rcsb.org/structure/pdb_00007v2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v30", "url": "https://www.rcsb.org/structure/pdb_00007v30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v31", "url": "https://www.rcsb.org/structure/pdb_00007v31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v32", "url": "https://www.rcsb.org/structure/pdb_00007v32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v33", "url": "https://www.rcsb.org/structure/pdb_00007v33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v3m", "url": "https://www.rcsb.org/structure/pdb_00007v3m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbl", "url": "https://www.rcsb.org/structure/pdb_00007vbl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbp", "url": "https://www.rcsb.org/structure/pdb_00007vbp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vc0", "url": "https://www.rcsb.org/structure/pdb_00007vc0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vwl", "url": "https://www.rcsb.org/structure/pdb_00007vwl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxs", "url": "https://www.rcsb.org/structure/pdb_00007vxs", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy1", "url": "https://www.rcsb.org/structure/pdb_00007vy1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy9", "url": "https://www.rcsb.org/structure/pdb_00007vy9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vye", "url": "https://www.rcsb.org/structure/pdb_00007vye", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyg", "url": "https://www.rcsb.org/structure/pdb_00007vyg", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyi", "url": "https://www.rcsb.org/structure/pdb_00007vyi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vys", "url": "https://www.rcsb.org/structure/pdb_00007vys", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vz8", "url": "https://www.rcsb.org/structure/pdb_00007vz8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzv", "url": "https://www.rcsb.org/structure/pdb_00007vzv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzw", "url": "https://www.rcsb.org/structure/pdb_00007vzw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w00", "url": "https://www.rcsb.org/structure/pdb_00007w00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0h", "url": "https://www.rcsb.org/structure/pdb_00007w0h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0r", "url": "https://www.rcsb.org/structure/pdb_00007w0r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0y", "url": "https://www.rcsb.org/structure/pdb_00007w0y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1o", "url": "https://www.rcsb.org/structure/pdb_00007w1o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1p", "url": "https://www.rcsb.org/structure/pdb_00007w1p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1t", "url": "https://www.rcsb.org/structure/pdb_00007w1t", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1u", "url": "https://www.rcsb.org/structure/pdb_00007w1u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1v", "url": "https://www.rcsb.org/structure/pdb_00007w1v", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1z", "url": "https://www.rcsb.org/structure/pdb_00007w1z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w20", "url": "https://www.rcsb.org/structure/pdb_00007w20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2k", "url": "https://www.rcsb.org/structure/pdb_00007w2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2l", "url": "https://www.rcsb.org/structure/pdb_00007w2l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2r", "url": "https://www.rcsb.org/structure/pdb_00007w2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2u", "url": "https://www.rcsb.org/structure/pdb_00007w2u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2y", "url": "https://www.rcsb.org/structure/pdb_00007w2y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w31", "url": "https://www.rcsb.org/structure/pdb_00007w31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w32", "url": "https://www.rcsb.org/structure/pdb_00007w32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w35", "url": "https://www.rcsb.org/structure/pdb_00007w35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4c", "url": "https://www.rcsb.org/structure/pdb_00007w4c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4d", "url": "https://www.rcsb.org/structure/pdb_00007w4d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4e", "url": "https://www.rcsb.org/structure/pdb_00007w4e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4f", "url": "https://www.rcsb.org/structure/pdb_00007w4f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4g", "url": "https://www.rcsb.org/structure/pdb_00007w4g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4j", "url": "https://www.rcsb.org/structure/pdb_00007w4j", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4k", "url": "https://www.rcsb.org/structure/pdb_00007w4k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4l", "url": "https://www.rcsb.org/structure/pdb_00007w4l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4m", "url": "https://www.rcsb.org/structure/pdb_00007w4m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4n", "url": "https://www.rcsb.org/structure/pdb_00007w4n", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4q", "url": "https://www.rcsb.org/structure/pdb_00007w4q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ud1", "url": "https://www.rcsb.org/structure/pdb_00008ud1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueo", "url": "https://www.rcsb.org/structure/pdb_00008ueo", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uep", "url": "https://www.rcsb.org/structure/pdb_00008uep", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueq", "url": "https://www.rcsb.org/structure/pdb_00008ueq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uer", "url": "https://www.rcsb.org/structure/pdb_00008uer", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ues", "url": "https://www.rcsb.org/structure/pdb_00008ues", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uet", "url": "https://www.rcsb.org/structure/pdb_00008uet", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueu", "url": "https://www.rcsb.org/structure/pdb_00008ueu", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uev", "url": "https://www.rcsb.org/structure/pdb_00008uev", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uew", "url": "https://www.rcsb.org/structure/pdb_00008uew", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uex", "url": "https://www.rcsb.org/structure/pdb_00008uex", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uey", "url": "https://www.rcsb.org/structure/pdb_00008uey", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uez", "url": "https://www.rcsb.org/structure/pdb_00008uez", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugh", "url": "https://www.rcsb.org/structure/pdb_00008ugh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugi", "url": "https://www.rcsb.org/structure/pdb_00008ugi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugj", "url": "https://www.rcsb.org/structure/pdb_00008ugj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugn", "url": "https://www.rcsb.org/structure/pdb_00008ugn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugr", "url": "https://www.rcsb.org/structure/pdb_00008ugr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zo8", "url": "https://www.rcsb.org/structure/pdb_00008zo8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zou", "url": "https://www.rcsb.org/structure/pdb_00008zou", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zp8", "url": "https://www.rcsb.org/structure/pdb_00008zp8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsk", "url": "https://www.rcsb.org/structure/pdb_00008zsk", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsl", "url": "https://www.rcsb.org/structure/pdb_00008zsl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsm", "url": "https://www.rcsb.org/structure/pdb_00008zsm", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsn", "url": "https://www.rcsb.org/structure/pdb_00008zsn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zso", "url": "https://www.rcsb.org/structure/pdb_00008zso", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsq", "url": "https://www.rcsb.org/structure/pdb_00008zsq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsr", "url": "https://www.rcsb.org/structure/pdb_00008zsr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zxz", "url": "https://www.rcsb.org/structure/pdb_00008zxz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009buh", "url": "https://www.rcsb.org/structure/pdb_00009buh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bwd", "url": "https://www.rcsb.org/structure/pdb_00009bwd", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bxv", "url": "https://www.rcsb.org/structure/pdb_00009bxv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cd6", "url": "https://www.rcsb.org/structure/pdb_00009cd6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cdn", "url": "https://www.rcsb.org/structure/pdb_00009cdn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009ce2", "url": "https://www.rcsb.org/structure/pdb_00009ce2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6h", "url": "https://www.rcsb.org/structure/pdb_00009j6h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6w", "url": "https://www.rcsb.org/structure/pdb_00009j6w", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GPN", "url": "https://www.rcsb.org/structure/5GPN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.rcsb.org/structure/5GUP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.rcsb.org/structure/7V2C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.rcsb.org/structure/7V2D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.rcsb.org/structure/7V2E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.rcsb.org/structure/7V2F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.rcsb.org/structure/7V2H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.rcsb.org/structure/7V2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.rcsb.org/structure/7V2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.rcsb.org/structure/7V30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.rcsb.org/structure/7V31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.rcsb.org/structure/7V32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.rcsb.org/structure/7V33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.rcsb.org/structure/7V3M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.rcsb.org/structure/7VBL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.rcsb.org/structure/7VBP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.rcsb.org/structure/7VC0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.rcsb.org/structure/7VWL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.rcsb.org/structure/7VXS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.rcsb.org/structure/7VY1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.rcsb.org/structure/7VY9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.rcsb.org/structure/7VYE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.rcsb.org/structure/7VYG", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.rcsb.org/structure/7VYI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.rcsb.org/structure/7VYS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.rcsb.org/structure/7VZ8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.rcsb.org/structure/7VZV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.rcsb.org/structure/7VZW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.rcsb.org/structure/7W00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.rcsb.org/structure/7W0H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.rcsb.org/structure/7W0R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.rcsb.org/structure/7W0Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.rcsb.org/structure/7W1O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.rcsb.org/structure/7W1P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.rcsb.org/structure/7W1T", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.rcsb.org/structure/7W1U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.rcsb.org/structure/7W1V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.rcsb.org/structure/7W1Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.rcsb.org/structure/7W20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.rcsb.org/structure/7W2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.rcsb.org/structure/7W2L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.rcsb.org/structure/7W2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.rcsb.org/structure/7W2U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.rcsb.org/structure/7W2Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.rcsb.org/structure/7W31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.rcsb.org/structure/7W32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.rcsb.org/structure/7W35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.rcsb.org/structure/7W4C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.rcsb.org/structure/7W4D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.rcsb.org/structure/7W4E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.rcsb.org/structure/7W4F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.rcsb.org/structure/7W4G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.rcsb.org/structure/7W4J", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.rcsb.org/structure/7W4K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.rcsb.org/structure/7W4L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.rcsb.org/structure/7W4M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.rcsb.org/structure/7W4N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.rcsb.org/structure/7W4Q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UD1", "url": "https://www.rcsb.org/structure/8UD1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEO", "url": "https://www.rcsb.org/structure/8UEO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEP", "url": "https://www.rcsb.org/structure/8UEP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEQ", "url": "https://www.rcsb.org/structure/8UEQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UER", "url": "https://www.rcsb.org/structure/8UER", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UES", "url": "https://www.rcsb.org/structure/8UES", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UET", "url": "https://www.rcsb.org/structure/8UET", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEU", "url": "https://www.rcsb.org/structure/8UEU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEV", "url": "https://www.rcsb.org/structure/8UEV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEW", "url": "https://www.rcsb.org/structure/8UEW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEX", "url": "https://www.rcsb.org/structure/8UEX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEY", "url": "https://www.rcsb.org/structure/8UEY", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEZ", "url": "https://www.rcsb.org/structure/8UEZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.rcsb.org/structure/8UGH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.rcsb.org/structure/8UGI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.rcsb.org/structure/8UGJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.rcsb.org/structure/8UGN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.rcsb.org/structure/8UGR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.rcsb.org/structure/8ZO8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.rcsb.org/structure/8ZOU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.rcsb.org/structure/8ZP8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.rcsb.org/structure/8ZSK", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.rcsb.org/structure/8ZSL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.rcsb.org/structure/8ZSM", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.rcsb.org/structure/8ZSN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.rcsb.org/structure/8ZSO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.rcsb.org/structure/8ZSQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.rcsb.org/structure/8ZSR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.rcsb.org/structure/8ZXZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.rcsb.org/structure/9BUH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.rcsb.org/structure/9BWD", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.rcsb.org/structure/9BXV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.rcsb.org/structure/9CD6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.rcsb.org/structure/9CDN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.rcsb.org/structure/9CE2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.rcsb.org/structure/9J6H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.rcsb.org/structure/9J6W", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF09781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6799198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003132594", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132594", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1V496", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V496", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V496-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V496-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7U1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7U1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGC6-1", "url": "https://www.uniprot.org/uniprotkb/F1SGC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAMSLLQRASVTAVATLSRSRLGTRFGFGGFLTHGFPKTGAPVRHSGDHGKRLFIIKPSGFYDRRFLKLMRFYILLTGIPVAIGITLVNVFIGEAELADIPEGYVPEHWEYFKHPISRWIARTFYDGPEKNYEKTMAILQIEAEKAELRLKELEVRRLMRARGDGPWYQYPTIDKALIDHSPKTTPDN", "length": 189, "header": "tr|F1SGC6-1|F1SGC6_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFB5 PE=1 SV=1 CANONICAL=F1SGC6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V496-1", "url": "https://www.uniprot.org/uniprotkb/F1SGC6/entry#A0A4X1V496-1", "sequence": { "sequence": "MAAMSLLQRASVTAVATLSRSRLGTRFGFGGFLTHGFPKTGGEAELADIPEGYVPEHWEYFKHPISRWIARTFYDGPEKNYEKTMAILQIEAEKAELRLKELEVRRLMRARGDGPWYQYPTIDKALIDHSPKTTPDN", "length": 137, "header": "tr|A0A4X1V496-1|F1SGC6_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFB5 PE=1 SV=1 CANONICAL=F1SGC6-1" }, "locus": { "chromosome": "13", "start_pos": 117671400, "end_pos": 117656534, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067642.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067642.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069167.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069167.1" } ] } }, { "isoform_ac": "A0A5G2R7U1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGC6/entry#A0A5G2R7U1-1", "sequence": { "sequence": "MAAMSLLQRASVTAVATLSRSRLGTRFGFGGFLTHGFPKTGAPVRHSGDHGKRLFIIKPSGFYDRRFLKLMRFYILLTGIPVAIGITLVNVFIGEAELADIPEGYVPEHWEYFKVKGARSSKINACKRRWSVVSVSNH", "length": 138, "header": "tr|A0A5G2R7U1-1|F1SGC6_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFB5 PE=1 SV=2 CANONICAL=F1SGC6-1" }, "locus": { "chromosome": "13", "start_pos": 117671354, "end_pos": 117656534, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073055.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073055.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070192.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070192.2" } ] } }, { "isoform_ac": "F1SGC6-1", "url": "https://www.uniprot.org/uniprotkb/F1SGC6/entry#F1SGC6-1", "sequence": { "sequence": "MAAMSLLQRASVTAVATLSRSRLGTRFGFGGFLTHGFPKTGAPVRHSGDHGKRLFIIKPSGFYDRRFLKLMRFYILLTGIPVAIGITLVNVFIGEAELADIPEGYVPEHWEYFKHPISRWIARTFYDGPEKNYEKTMAILQIEAEKAELRLKELEVRRLMRARGDGPWYQYPTIDKALIDHSPKTTPDN", "length": 189, "header": "tr|F1SGC6-1|F1SGC6_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial OS=Sus scrofa OX=9823 GN=NDUFB5 PE=1 SV=1 CANONICAL=F1SGC6-1" }, "locus": { "chromosome": "13", "start_pos": 117671400, "end_pos": 117656534, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012875.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012875.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012534.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012534.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The architecture of the mammalian respirasome.", "journal": "Nature", "date": "2016", "authors": "Gu Jinke, Wu Meng, Guo Runyu, Yan Kaige, Lei Jianlin, Gao Ning, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ], "reference": [ { "type": "PubMed", "id": "27654917", "url": "https://glygen.org/publication/PubMed/27654917" } ] }, { "title": "Structure of Mammalian Respiratory Supercomplex I1III2IV1.", "journal": "Cell", "date": "2016", "authors": "Wu Meng, Gu Jinke, Guo Runyu, Huang Yushen, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ], "reference": [ { "type": "PubMed", "id": "27912063", "url": "https://glygen.org/publication/PubMed/27912063" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "The coupling mechanism of mammalian mitochondrial complex I.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Gu Jinke, Liu Tianya, Guo Runyu, Zhang Laixing, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ], "reference": [ { "type": "PubMed", "id": "35145322", "url": "https://glygen.org/publication/PubMed/35145322" } ] }, { "title": "High-resolution in situ structures of mammalian respiratory supercomplexes.", "journal": "Nature", "date": "2024", "authors": "Zheng Wan, Chai Pengxin, Zhu Jiapeng, Zhang Kai", "evidence": [ { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ], "reference": [ { "type": "PubMed", "id": "38811722", "url": "https://glygen.org/publication/PubMed/38811722" } ] } ], "pathway": [ { "id": "ssc:100523751", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523751", "resource": "KEGG Pathway" }, { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "G3I1D5-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial", "gene_name": "Ndufb5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAMSLLQRASVSALTALSGRRAGTRLGVGSFLTRTFPKIVAPVRHSGDHGKRLFVIKSSSYYDDRFLKLLRFYILLTGIPVVIGITMVNIFIGEAELAEIPEGYIPEHWEYYKHPISRWIARTFYDCPEKNYEKTMAILQIESEKAELRKKELEVRRLMRSRGDGPWFQYPTPEKEFIDYSPKATPDN", "length": 189 }, "evidence": [ { "id": "F1SGC6", "url": "https://omabrowser.org/oma/group/F1SGC6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O43674-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial", "gene_name": "NDUFB5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAMSLLRRVSVTAVAALSGRPLGTRLGFGGFLTRGFPKAAAPVRHSGDHGKRLFVIRPSRFYDRRFLKLLRFYIALTGIPVAIFITLVNVFIGQAELAEIPEGYVPEHWEYYKHPISRWIARNFYDSPEKIYERTMAVLQIEAEKAELRVKELEVRKLMHVRGDGPWYYYETIDKELIDHSPKATPDN", "length": 189 }, "evidence": [ { "id": "F1SGC6", "url": "https://omabrowser.org/oma/group/F1SGC6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q02380-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial", "gene_name": "NDUFB5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAMSLLHRASVSAVAALSGRRLGTRLGFGGFLTRDFPKTVAPVRHSGDHGKRLFIIKPSGFYDKRFLKLLRFYILLTGIPVAIGITLINVFIGEAELAEIPEGYVPEHWEYFKHPISRWIARTFFDGPEKNYERTMAILQIEAEKAELRLKELEVRRLMRARGDGPWFHYPTIDKELIDHSPKATPDN", "length": 189 }, "evidence": [ { "id": "F1SGC6", "url": "https://omabrowser.org/oma/group/F1SGC6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9CQH3-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial", "gene_name": "Ndufb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAMSLLQRASVSALTALSCRRAGPRLGVGSFLTRSFPKTVAPVRHSGDHGKRLFVVKPSLYYDARFLRLMKFYLMLTGIPVIIGITLVNIFIGEAELAEIPEGYIPEHWEYYKHPISRWIARNFYDGPEKNYEKTLAILQIESEKAELRLKEQEVRRLMRARGDGPWYQFPTPEKEFIDHSPKATPDN", "length": 189 }, "evidence": [ { "id": "F1SGC6", "url": "https://omabrowser.org/oma/group/F1SGC6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VTU2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial", "gene_name": "ND-SGDH", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MVGWSRLLSPAAKFASYRAVLQEPACRNALHQQLRRMGGDHGHHQMIIKPSRFQWDKFKDLLHFYVMLGVIPVTALVLYANIFVGPAQLAEIPEGYEPKHWEYEKHPISRFISRYILNSDQQNYEKSLHYLYEENEKAQIRLLEDEVRRKMSERNDYQAYYYRPSVAKYHRISKEAADELEALRGD", "length": 186 }, "evidence": [ { "id": "F1SGC6", "url": "https://omabrowser.org/oma/group/F1SGC6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "respiratory electron transport chain", "id": "GO:0022904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022904", "evidence": [ { "database": "UniProtKB", "id": "F1SGC6", "url": "https://www.uniprot.org/uniprotkb/F1SGC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 5 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPS6-1", "uniprot_ac": "F1SPS6", "uniprot_id": "F1SPS6_PIG", "mass": { "chemical_mass": 82025.0, "monoisotopic_mass": 82025.0 }, "refseq": { "ac": "XP_003132263", "name": "hepatocyte growth factor-like protein isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132263" }, "gene_names": [ { "name": "MST1", "type": "recommended", "evidence": [ { "id": "F1SPS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" } ] }, { "name": "MST1", "type": "synonym", "evidence": [ { "id": "XP_003132263", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132263" } ] } ], "protein_names": [ { "name": "Hepatocyte growth factor-like protein", "type": "recommended", "evidence": [ { "id": "F1SPS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPS6/entry#names_and_taxonomy" } ] }, { "name": "Macrophage stimulatory protein", "type": "synonym", "evidence": [ { "id": "F1SPS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPS6/entry#names_and_taxonomy" } ] }, { "name": "hepatocyte growth factor-like protein isoform X6", "type": "synonym", "evidence": [ { "id": "XP_003132263", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132263" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPS6", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MST1", "url": "https://www.uniprot.org/uniprotkb/F1SPS6", "locus": { "chromosome": "13", "start_pos": 32214937, "end_pos": 32219902, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011386", "url": "https://www.ensembl.org/id/ENSSSCG00000011386" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011386", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011386", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00108", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00108", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01099", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01099", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512987", "url": "https://www.ncbi.nlm.nih.gov/gene/100512987", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512987", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512987", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YQIPRCT", "url": "https://omabrowser.org/oma/group/YQIPRCT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24261", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24261", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24261:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24261:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00024", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00024", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00051", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00051", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8852405", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852405", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003132263", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132263", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R9Q9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Q9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Q9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPS6", "url": "https://www.uniprot.org/uniprotkb/F1SPS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPS6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLWWVTVQSPARRMGWLPLLLLLTQCSGAPGQRSPLNDFQVLPGTELQHLLHAVGPGSWQEDVADAEECAGRCGPLMDCRAFHYNVSSHGCQLLPWTQHSPHTRLQHSGSFDLFQKKNYVRTCIMDNGVEYRGTVAITMGGLPCQRWNLRFPNDHKYTPTLRNGLEENFCRNPDRDPGGPWCYTMDPAVRFQSCGIKSCQEAVCFWCNGEDYRGSVDRTESGRECQRWDLQHPHPHPFEPLKFLDKNLDDNYCRNPDGSERPWCYTTDPQVEREFCDLPRCGSGAQPRQEATTLNCFRGKGEGYRGMVNTTAAGVPCQRWDAQHPHQHRFAPEKYACKDLRENFCRNPDGSEAPWCFTSRPGMRVAFCYQIRRCNDDVRPEDCYHGWGEQYRGSVSKTRKGVRCQSWSARTPHKPQFTPTSDPEAQLEENFCRNPDGDSHGPWCYTTDPGIPFDYCALRRCDDDQPPSILEPPDPVLFEKCGKRVTRVDPRRSKLRVVGGQPGNSPWTVSLRNRQGQHFCGGSLVKEQWVLTARQCFSSCHVPLMGYEVWLGTLFQNPQPGEPGLQRIPVAKMICGPSDSQLVLLKLERPATLNQRVALICLPPERYVVPPGTKCEIAGWGETKGTGDDTVLNMASLNVISNQECNVKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHDCWVLEGIIIPNRVCARPRWPAIFMRVSVFVDWINKVMRLG", "length": 725, "header": "tr|F1SPS6-1|F1SPS6_PIG Isoform 1 of Hepatocyte growth factor-like protein OS=Sus scrofa OX=9823 GN=MST1 PE=1 SV=3 CANONICAL=F1SPS6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R9Q9-1", "url": "https://www.uniprot.org/uniprotkb/F1SPS6/entry#A0A5G2R9Q9-1", "sequence": { "sequence": "MGLWWVTVQSPARRMGWLPLLLLLTQCSGAPGQRSPLNDFQVLPGTELQHLLHAVGPGSWQEDVADAEECAGRCGPLMDCRAFHYNVSSHGCQLLPWTQHSPHTRLQHSGSFDLFQKKNYVRTCIMDNGVEYRGTVAITMGGLPCQRWNLRFPNDHKYTPTLRNGLEENFCRNPDRDPGGPWCYTMDPAVRFQSCGIKSCQEAVCFWCNGEDYRGSVDRTESGRECQRWDLQHPHPHPFEPLKPGLSFGLGSDPPRSIQGSGAQPRQEATTLNCFRGKGEGYRGMVNTTAAGVPCQRWDAQHPHQHRFAPEKYACKDLRENFCRNPDGSEAPWCFTSRPGMRVAFCYQIRRCNDDVRPEDCYHGWGEQYRGSVSKTRKGVRCQSWSARTPHKPQFTPTSDPEAQLEENFCRNPDGDSHGPWCYTTDPGIPFDYCALRRCDDDQPPSILEPPDPVLFEKCGKRVTRVDPRRSKLRVVGGQPGNSPWTVSLRNRQGQHFCGGSLVKEQWVLTARQCFSSCHVPLMGYEVWLGTLFQNPQPGEPGLQRIPVAKMICGPSDSQLVLLKLERPATLNQRVALICLPPERYVVPPGTKCEIAGWGETKGTGDDTVLNMASLNVISNQECNVKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHDCWVLEGIIIPNRVCARPRWPAIFMRVSVFVDWINKVMRLG", "length": 702, "header": "tr|A0A5G2R9Q9-1|F1SPS6_PIG Computationally mapped isoform of Hepatocyte growth factor-like protein OS=Sus scrofa OX=9823 GN=MST1 PE=1 SV=1 CANONICAL=F1SPS6-1" }, "locus": { "chromosome": "13", "start_pos": 32219893, "end_pos": 32215010, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081149.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081149.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074039.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074039.1" } ] } }, { "isoform_ac": "F1SPS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPS6/entry#F1SPS6-1", "sequence": { "sequence": "MGLWWVTVQSPARRMGWLPLLLLLTQCSGAPGQRSPLNDFQVLPGTELQHLLHAVGPGSWQEDVADAEECAGRCGPLMDCRAFHYNVSSHGCQLLPWTQHSPHTRLQHSGSFDLFQKKNYVRTCIMDNGVEYRGTVAITMGGLPCQRWNLRFPNDHKYTPTLRNGLEENFCRNPDRDPGGPWCYTMDPAVRFQSCGIKSCQEAVCFWCNGEDYRGSVDRTESGRECQRWDLQHPHPHPFEPLKFLDKNLDDNYCRNPDGSERPWCYTTDPQVEREFCDLPRCGSGAQPRQEATTLNCFRGKGEGYRGMVNTTAAGVPCQRWDAQHPHQHRFAPEKYACKDLRENFCRNPDGSEAPWCFTSRPGMRVAFCYQIRRCNDDVRPEDCYHGWGEQYRGSVSKTRKGVRCQSWSARTPHKPQFTPTSDPEAQLEENFCRNPDGDSHGPWCYTTDPGIPFDYCALRRCDDDQPPSILEPPDPVLFEKCGKRVTRVDPRRSKLRVVGGQPGNSPWTVSLRNRQGQHFCGGSLVKEQWVLTARQCFSSCHVPLMGYEVWLGTLFQNPQPGEPGLQRIPVAKMICGPSDSQLVLLKLERPATLNQRVALICLPPERYVVPPGTKCEIAGWGETKGTGDDTVLNMASLNVISNQECNVKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHDCWVLEGIIIPNRVCARPRWPAIFMRVSVFVDWINKVMRLG", "length": 725, "header": "tr|F1SPS6-1|F1SPS6_PIG Isoform 1 of Hepatocyte growth factor-like protein OS=Sus scrofa OX=9823 GN=MST1 PE=1 SV=3 CANONICAL=F1SPS6-1" }, "locus": { "chromosome": "13", "start_pos": 32219893, "end_pos": 32215010, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012464.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012464.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012139.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012139.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R9Q9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Q9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512987", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512987", "resource": "KEGG Pathway" }, { "id": "R-SSC-8852405", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852405", "resource": "Reactome", "description": "Signaling by MST1" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A3H9-1", "protein_name": "Macrophage stimulating 1 (hepatocyte growth factor-like)", "gene_name": "MST1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPARLGLLLSLAVALSAGHRSPLNDFQRLRGTELRAAPNEPPPSAPAHGAAQQCAQRCANRPDCRAFHHERQSQLCQLLPWSQRSPGARLQKNIHYDLYQKKDFLRECIVANGTSYRGTRDTTERGLRCQHWQATTPHDHRFLPSLRNGLEENYCRNPDRDKRGPWCYTVDPNVRHQSCGIKKCEDAVCMTCNGEDYRGFVDHTESGTECQRWDLQHPHKHPYHPDKYPEKGLDDNYCRNPDSSERPWCYTTDPALEREFCRIRVCKKRPRPINVTTGCYRGKGEGYRGRVNVTVSGIPCQRWDAQTPHRHHFVPSKYPCKDLQENYCRNPDGSEAPWCFTTRPGMRVAFCFHIRRCDDELDAEGEPPPRGCPTGVSTSSTSSPCLSPECYHGHGERYHGHVSKTRKGITCQRWDATTPHVPQISPTTHPEAHLEKNYCRNPDNDSHGPWCYTMDPRTPFDYCAIKPCCELGPTEPWLPHGVRWATSHSPTLLSLCSRQRCAVCPGERRCSDIRGVRPAGREAAAEATCGGWDARQLAVDRQHPQPVSGRPAFQPCRAASRVPTPANPRACRAGLHFCGGSLVKEQWVISTQQCFSSCDADLSGYEVHLGTLFKDPSPTDPDLQAIPIVRIICGPSESHLVLLKLAWPAVLNKRVALICLPPERYIVPAGTTCEIAGFGETRGTADGHVLNVAKLPVMAHAECQAALRGRLKESELCTAPLRAGVGACEGDYGGPLACLTADCWVLEGVITPSRVCARTDQPALFIRVSLYVDWIHKVMRMV", "length": 782 }, "evidence": [ { "id": "F1SPS6", "url": "https://omabrowser.org/oma/group/F1SPS6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F7FMS0-1", "protein_name": "Hepatocyte growth factor-like protein", "gene_name": "Mst1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGWLPLLLLLAQCSRALGQRSPLNDFQLLRGTELRNLLHPVVPGPWQEDVADAEECARRCGPLLDCRAFHYNMSSHGCQLLPWTQHSLRAQLHHSSLCDLFQKKDYVRTCIMDNGASYRGTVARTADGLPCQAWSRRFPNDHKYTPTPKNGLEENFCRNPDGDPRGPWCYTTNRSVRFQSCGIKSCREAVCVWCNGEDYRGEVDVTESGRECQRWDLQHPHSHPFHPEKFPDKALKDNYCRNPDASERPWCYTTDPNVEREFCDLPSCGMLQGQGLGGNLEKTGRRGSTRRGPNLPPTTKGSKSQQRNKVKASNCFRGKGEDYRGTTNTTSAGVPCQRWDAQNPHQHRFVPEKYACKDLRENFCRNPDGSEAPWCFTSRPGLRVAFCYQIPRCTEEVVPEGCYHGSGEQYRGSVSKTRKGVQCQHWSSETPHKPQFTPTSAPHAGLEANFCRNPDGDSHGPWCYTLDPETLFDYCALKRCDDDQPPSILDPPVQVQFEKCGKRVDQSNRLRVVGGHPGNSPWTVSLRNRQGQHFCGGSLVKEQWVLTARQCIWSCHDPLTGYEVWLGTINQNPQPGEANLQRVSVAKTVCGPAGSQLVLLKLERPVILNHHVARICLPPEQYVVPPGTNCEIAGWGESKGTSNSTVLHVAKMKVISSQECNVKYRRRVQESEICTEGLLAPTGACEGDYGGPLACYTHDCWVLQGLIIPNRVCARPRWPAIFTRVSVFVDWINKVVQLE", "length": 739 }, "evidence": [ { "id": "F1SPS6", "url": "https://omabrowser.org/oma/group/F1SPS6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P26927-1", "protein_name": "Hepatocyte growth factor-like protein", "gene_name": "MST1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGWLPLLLLLTQCLGVPGQRSPLNDFQVLRGTELQHLLHAVVPGPWQEDVADAEECAGRCGPLMDCRAFHYNVSSHGCQLLPWTQHSPHTRLRRSGRCDLFQKKDYVRTCIMNNGVGYRGTMATTVGGLPCQAWSHKFPNDHKYTPTLRNGLEENFCRNPDGDPGGPWCYTTDPAVRFQSCGIKSCREAACVWCNGEEYRGAVDRTESGRECQRWDLQHPHQHPFEPGKFLDQGLDDNYCRNPDGSERPWCYTTDPQIEREFCDLPRCGSEAQPRQEATTVSCFRGKGEGYRGTANTTTAGVPCQRWDAQIPHQHRFTPEKYACKDLRENFCRNPDGSEAPWCFTLRPGMRAAFCYQIRRCTDDVRPQDCYHGAGEQYRGTVSKTRKGVQCQRWSAETPHKPQFTFTSEPHAQLEENFCRNPDGDSHGPWCYTMDPRTPFDYCALRRCADDQPPSILDPPDQVQFEKCGKRVDRLDQRRSKLRVVGGHPGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNCWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLG", "length": 711 }, "evidence": [ { "id": "F1SPS6", "url": "https://omabrowser.org/oma/group/F1SPS6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P26928-1", "protein_name": "Hepatocyte growth factor-like protein", "gene_name": "Mst1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGWLPLLLLLVQCSRALGQRSPLNDFQLFRGTELRNLLHTAVPGPWQEDVADAEECARRCGPLLDCRAFHYNMSSHGCQLLPWTQHSLHTQLYHSSLCHLFQKKDYVRTCIMDNGVSYRGTVARTAGGLPCQAWSRRFPNDHKYTPTPKNGLEENFCRNPDGDPRGPWCYTTNRSVRFQSCGIKTCREAVCVLCNGEDYRGEVDVTESGRECQRWDLQHPHSHPFQPEKFLDKDLKDNYCRNPDGSERPWCYTTDPNVEREFCDLPSCGPNLPPTVKGSKSQRRNKGKALNCFRGKGEDYRGTTNTTSAGVPCQRWDAQSPHQHRFVPEKYACKDLRENFCRNPDGSEAPWCFTSRPGLRMAFCHQIPRCTEELVPEGCYHGSGEQYRGSVSKTRKGVQCQHWSSETPHKPQFTPTSAPQAGLEANFCRNPDGDSHGPWCYTLDPDILFDYCALQRCDDDQPPSILDPPDQVVFEKCGKRVDKSNKLRVVGGHPGNSPWTVSLRNRQGQHFCGGSLVKEQWVLTARQCIWSCHEPLTGYEVWLGTINQNPQPGEANLQRVPVAKAVCGPAGSQLVLLKLERPVILNHHVALICLPPEQYVVPPGTKCEIAGWGESIGTSNNTVLHVASMNVISNQECNTKYRGHIQESEICTQGLVVPVGACEGDYGGPLACYTHDCWVLQGLIIPNRVCARPRWPAIFTRVSVFVDWINKVMQLE", "length": 716 }, "evidence": [ { "id": "F1SPS6", "url": "https://omabrowser.org/oma/group/F1SPS6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1SPS6", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" } ], "pmid": "" }, { "name": "receptor tyrosine kinase binding", "id": "GO:0030971", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030971", "evidence": [ { "database": "UniProtKB", "id": "F1SPS6", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SPS6", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SPS6", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SPS6", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" } ], "pmid": "" }, { "name": "regulation of macromolecule metabolic process", "id": "GO:0060255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060255", "evidence": [ { "database": "UniProtKB", "id": "F1SPS6", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" } ], "pmid": "" }, { "name": "regulation of receptor signaling pathway via JAK-STAT", "id": "GO:0046425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046425", "evidence": [ { "database": "UniProtKB", "id": "F1SPS6", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 310, "end_pos": 312, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" }, { "id": "PS50948", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50948" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Apple", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 119, "start_aa": "Cys", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" }, { "id": "PS50070", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50070" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kringle", "eco_id": "ECO_0000259", "start_pos": 123, "end_pos": 200, "start_aa": "Thr", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPS6" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 498, "end_pos": 723, "start_aa": "Val", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 310, "end_pos": 312 }, { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLC2-1", "uniprot_ac": "F1SLC2", "uniprot_id": "F1SLC2_PIG", "mass": { "chemical_mass": 15351.0, "monoisotopic_mass": 15351.0 }, "refseq": { "ac": "XP_003126064", "name": "mitochondrial import receptor subunit TOM22 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126064" }, "gene_names": [ { "name": "TOMM22", "type": "recommended", "evidence": [ { "id": "F1SLC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLC2" } ] }, { "name": "TOMM22", "type": "synonym", "evidence": [ { "id": "XP_003126064", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126064" } ] } ], "protein_names": [ { "name": "Mitochondrial import receptor subunit TOM22 homolog", "type": "recommended", "evidence": [ { "id": "F1SLC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLC2/entry#names_and_taxonomy" } ] }, { "name": "Translocase of outer membrane 22 kDa subunit homolog", "type": "synonym", "evidence": [ { "id": "F1SLC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLC2/entry#names_and_taxonomy" } ] }, { "name": "mitochondrial import receptor subunit TOM22 homolog", "type": "synonym", "evidence": [ { "id": "XP_003126064", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126064" } ] } ], "function": [ { "annotation": "Central receptor component of the translocase of the outer membrane of mitochondria (TOM) complex essential for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. Together with the peripheral receptor TOMM20, functions as the transit peptide receptor and facilitates the movement of preproteins into the translocation pore. The TOM complex associates with the ion channel VDAC2 and PINK1 kinase at depolarized mitochondria, this interaction stabilizes PINK1 at the outer mitochondrial membrane and triggers downstream mitophagy by the recruitment of the E3 ubiquitin ligase PRKN. Required for the translocation across the mitochondrial outer membrane of cytochrome P450 monooxygenases.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R9U3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9U3#function" }, { "database": "UniProtKB", "id": "ARBA00094293", "url": "https://www.uniprot.org/uniprotkb/ARBA00094293#function" }, { "database": "UniProtKB", "id": "F1SLC2", "url": "https://www.uniprot.org/uniprotkb/F1SLC2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLC2", "url": "https://www.uniprot.org/uniprotkb/F1SLC2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TOMM22", "url": "https://www.uniprot.org/uniprotkb/F1SLC2", "locus": { "chromosome": "5", "start_pos": 9336130, "end_pos": 9350015, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000097", "url": "https://www.ensembl.org/id/ENSSSCG00000000097" } ] } } ], "crossref": [ { "id": "F1SLC2", "url": "https://alphafold.ebi.ac.uk/entry/F1SLC2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000097", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000097", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22884", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22884", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520786", "url": "https://www.ncbi.nlm.nih.gov/gene/100520786", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520786", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520786", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DKDSGME", "url": "https://omabrowser.org/oma/group/DKDSGME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R9U3", "url": "https://www.orthodb.org/?gene=A0A5G2R9U3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SLC2", "url": "https://www.orthodb.org/?gene=F1SLC2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12504", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12504", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12504:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12504:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04281", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04281", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5205685", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5205685", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126064", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126064", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R9U3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9U3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9U3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLC2", "url": "https://www.uniprot.org/uniprotkb/F1SLC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLC2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLC2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAAAGPGASLSPDELLPKGDAEKPEDELEEEDDDELDETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPGKI", "length": 141, "header": "tr|F1SLC2-1|F1SLC2_PIG Isoform 1 of Mitochondrial import receptor subunit TOM22 homolog OS=Sus scrofa OX=9823 GN=TOMM22 PE=1 SV=2 CANONICAL=F1SLC2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R9U3-1", "url": "https://www.uniprot.org/uniprotkb/F1SLC2/entry#A0A5G2R9U3-1", "sequence": { "sequence": "MFQMPHVSGSSGRPWLKGSGTRPPDGGALSEPSCLWIPEGRLCQRCARLSPSASGDPPTPTPRPTAMAAAAAAGPGASLSPDELLPKGDAEKPEDELEEEDDDELDETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPGKI", "length": 207, "header": "tr|A0A5G2R9U3-1|F1SLC2_PIG Computationally mapped isoform of Mitochondrial import receptor subunit TOM22 homolog OS=Sus scrofa OX=9823 GN=TOMM22 PE=1 SV=1 CANONICAL=F1SLC2-1" }, "locus": { "chromosome": "5", "start_pos": 9338280, "end_pos": 9336777, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075473.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075473.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070904.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070904.1" } ] } }, { "isoform_ac": "F1SLC2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLC2/entry#F1SLC2-1", "sequence": { "sequence": "MAAAAAAGPGASLSPDELLPKGDAEKPEDELEEEDDDELDETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPGKI", "length": 141, "header": "tr|F1SLC2-1|F1SLC2_PIG Isoform 1 of Mitochondrial import receptor subunit TOM22 homolog OS=Sus scrofa OX=9823 GN=TOMM22 PE=1 SV=2 CANONICAL=F1SLC2-1" }, "locus": { "chromosome": "5", "start_pos": 9338082, "end_pos": 9336777, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000103.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000103.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000101.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000101.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R9U3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9U3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520786", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520786", "resource": "KEGG Pathway" }, { "id": "R-SSC-5205685", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5205685", "resource": "Reactome", "description": "PINK1-PRKN Mediated Mitophagy" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7I2K8-1", "protein_name": "Mitochondrial import receptor subunit TOM22 homolog", "gene_name": "Tomm22", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAAVAAAGAGEPLSPDELLPKAEVEKAEEELEEDEDDELDETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPPLPGKI", "length": 142 }, "evidence": [ { "id": "F1SLC2", "url": "https://omabrowser.org/oma/group/F1SLC2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A6QPI6-1", "protein_name": "Mitochondrial import receptor subunit TOM22 homolog", "gene_name": "TOMM22", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAAAGPGAPLSADELLPKGDAEKPEEELEEEDDEELDETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPGKI", "length": 140 }, "evidence": [ { "id": "F1SLC2", "url": "https://omabrowser.org/oma/group/F1SLC2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9CPQ3-1", "protein_name": "Mitochondrial import receptor subunit TOM22 homolog", "gene_name": "Tomm22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAVAAAGAGEPLSPEELLPKAEAEKAEEELEEDDDDELDETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPPLPGKM", "length": 142 }, "evidence": [ { "id": "F1SLC2", "url": "https://omabrowser.org/oma/group/F1SLC2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NS69-1", "protein_name": "Mitochondrial import receptor subunit TOM22 homolog", "gene_name": "TOMM22", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAVAAAGAGEPQSPDELLPKGDAEKPEEELEEDDDEELDETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVVFETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPSLPGKI", "length": 142 }, "evidence": [ { "id": "F1SLC2", "url": "https://omabrowser.org/oma/group/F1SLC2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SLC2", "url": "https://www.uniprot.org/uniprotkb/F1SLC2" } ], "pmid": "" }, { "name": "protein import into mitochondrial matrix", "id": "GO:0030150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030150", "evidence": [ { "database": "UniProtKB", "id": "F1SLC2", "url": "https://www.uniprot.org/uniprotkb/F1SLC2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial outer membrane translocase complex", "id": "GO:0005742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005742", "evidence": [ { "database": "UniProtKB", "id": "F1SLC2", "url": "https://www.uniprot.org/uniprotkb/F1SLC2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mitochondrion targeting sequence binding", "id": "GO:0030943", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030943", "evidence": [ { "database": "UniProtKB", "id": "F1SLC2", "url": "https://www.uniprot.org/uniprotkb/F1SLC2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLC2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 141, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLC2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLC2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIZ0-1", "uniprot_ac": "F1SIZ0", "uniprot_id": "F1SIZ0_PIG", "mass": { "chemical_mass": 47596.0, "monoisotopic_mass": 47596.0 }, "refseq": { "ac": "XP_020943102", "name": "sprouty-related, EVH1 domain-containing protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943102" }, "gene_names": [ { "name": "SPRED2", "type": "recommended", "evidence": [ { "id": "F1SIZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" } ] }, { "name": "SPRED2", "type": "synonym", "evidence": [ { "id": "XP_020943102", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943102" } ] } ], "protein_names": [ { "name": "Sprouty-related, EVH1 domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "F1SIZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0/entry#names_and_taxonomy" } ] }, { "name": "sprouty-related, EVH1 domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020943102", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943102" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIZ0", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPRED2", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0", "locus": { "chromosome": "3", "start_pos": 76649651, "end_pos": 76523589, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008357", "url": "https://www.ensembl.org/id/ENSSSCG00000008357" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008357", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008357", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10574", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10574", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518067", "url": "https://www.ncbi.nlm.nih.gov/gene/100518067", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000697", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000697", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FEHHRIC", "url": "https://omabrowser.org/oma/group/FEHHRIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11202", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11202", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11202:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11202:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00568", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00568", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5658442", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5658623", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658623", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943102", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943102", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZNR4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZNR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIZ0", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIZ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEGSTTSSSTIHNEAELGDDDVFTTATDSSSNSSQKREQPTRTISSPTSCEHRRIYTLGHLHDPYPTDHYHLEQPMPRPYRQVSFPDDDEEIVRINPREKIWMTGYEDYRHAPVRGKYLDPSEDADSYVRFAKGEVPKHDYNYPYVDSSDFGLGEDPKGRGGNVIKTQPSRGKSRRRKEDGERSRCEYCRDMFNHEENRRGHCQDAPDSVRTCIRRVSCMWCADSMLYHCMSDPEGDYTDPCSCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACYHCGVMCRCCGGKHKAAV", "length": 417, "header": "tr|F1SIZ0-1|F1SIZ0_PIG Isoform 1 of Sprouty-related, EVH1 domain-containing protein 2 OS=Sus scrofa OX=9823 GN=SPRED2 PE=4 SV=3 CANONICAL=F1SIZ0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNR4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0/entry#A0A286ZNR4-1", "sequence": { "sequence": "MASPASDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEGSTTSSSTIHNEAELGDDDVFTTATDSSSNSSQKREQPTRTISSPTSCEHRRIYTLGHLHDPYPTDHYHLEQPMPRPYRQVSFPDDDEEIVRINPREKIWMTGYEDYRHAPVRGKYLDPSEDADSYVRFAKGEVPKHDYNYPYVDSSDFGLGEDPKGRGGNVIKTQPSRGKSRRRKEDGERSRCEYCRDMFNHEENRRGHCQDAPDSVRTCIRRVSCMWCADSMLYHCMSDPEGDYTDPCSCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACYHCGVMCRCCGGKHKAAV", "length": 414, "header": "tr|A0A286ZNR4-1|F1SIZ0_PIG Computationally mapped isoform of Sprouty-related, EVH1 domain-containing protein 2 OS=Sus scrofa OX=9823 GN=SPRED2 PE=4 SV=1 CANONICAL=F1SIZ0-1" }, "locus": { "chromosome": "3", "start_pos": 76647042, "end_pos": 76593068, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085160.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085160.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070174.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070174.2" } ] } }, { "isoform_ac": "A0A5G2RBS7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0/entry#A0A5G2RBS7-1", "sequence": { "sequence": "MTEETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEGSTTSSSTIHNEAELGDDDVFTTATDSSSNSSQKREQPTRTISSPTSCEHRRIYTLGHLHDPYPTDHYHLEQPMPRPYRQVSFPDDDEEIVRINPREKIWMTDSYVRFAKGEVPKHDYNYPYVDSSDFGLGEDPKGRGGNVIKTQPSRGKSRRRKEDGERSRCEYCRDMFNHEENRRGHCQDAPDSVRTCIRRVSCMWCADSMLYHCMSDPEGDYTDPCSCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACYHCGVMCRCCGGKHKAAV", "length": 396, "header": "tr|A0A5G2RBS7-1|F1SIZ0_PIG Computationally mapped isoform of Sprouty-related, EVH1 domain-containing protein 2 OS=Sus scrofa OX=9823 GN=SPRED2 PE=4 SV=1 CANONICAL=F1SIZ0-1" }, "locus": { "chromosome": "3", "start_pos": 76647042, "end_pos": 76528300, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069124.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069124.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074473.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074473.1" } ] } }, { "isoform_ac": "F1SIZ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0/entry#F1SIZ0-1", "sequence": { "sequence": "MTEETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEGSTTSSSTIHNEAELGDDDVFTTATDSSSNSSQKREQPTRTISSPTSCEHRRIYTLGHLHDPYPTDHYHLEQPMPRPYRQVSFPDDDEEIVRINPREKIWMTGYEDYRHAPVRGKYLDPSEDADSYVRFAKGEVPKHDYNYPYVDSSDFGLGEDPKGRGGNVIKTQPSRGKSRRRKEDGERSRCEYCRDMFNHEENRRGHCQDAPDSVRTCIRRVSCMWCADSMLYHCMSDPEGDYTDPCSCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACYHCGVMCRCCGGKHKAAV", "length": 417, "header": "tr|F1SIZ0-1|F1SIZ0_PIG Isoform 1 of Sprouty-related, EVH1 domain-containing protein 2 OS=Sus scrofa OX=9823 GN=SPRED2 PE=4 SV=3 CANONICAL=F1SIZ0-1" }, "locus": { "chromosome": "3", "start_pos": 76647042, "end_pos": 76528300, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009151.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009151.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008920.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008920.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZNR4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5658442", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "resource": "Reactome", "description": "Regulation of RAS by GAPs" }, { "id": "R-SSC-5658623", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658623", "resource": "Reactome", "description": "FGFRL1 modulation of FGFR1 signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4KG11-1", "protein_name": "Sprouty-related protein with EVH-1 domain, isoform C", "gene_name": "Spred", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTEGHESDFLVTVRAQVMTRDESTEGWLPLAGGGLANVSIRKRARLSPLASGHDYIIYGQRISDQSVILSCVINRDLKYYKVMPTFHHWRAGKQRNGLTFQTAADARAFDKGVLRAYNELIDGLAKSNPTIICPPLTKYDSVGEDDVFMTLDLPVESESLQKIHSSPEGSEKSHKSVSNNSDSEKLPPPPIHYISTDKTSATTSPPDAPPASAAPSPATAGQIAASENYSYVTLTAVHHDYNYPVVDQPVGAQVLNARRESISALKKRNALEAAQAMAAAQTAAGGGLACRDGGSGKPLHKPNVSDILKKETRLRCRYCHELYSEDFNRRGACEYAPDAFRSGYECISGMGCARCMIYHCMSDAEGETAQHPCDCSASEAGCSKRWLGLAILSLFVPCLWCYPPLRACHLAGIHCGLCGGQHKPHVXHLEARLQGQHDDDPRPRSEFHYHHSEQSIMNSAKRPWGAKQKQSQQSQQSQRHFYNWELSHSLGAPQHQTPPYLMQSTGRKAPQNDYGRLLF", "length": 519 }, "evidence": [ { "id": "F1SIZ0", "url": "https://omabrowser.org/oma/group/F1SIZ0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0AAA9TYG3-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 2", "gene_name": "SPRED2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFSCSRGADLFPIQRHKEGSPGASLRTCWGQLLLLDNGQGEKGSSLLLQKIPPLLNEGLWSSVFPSWYSLVGVRKNSDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEGSTTSSSTIHNEAELGDDDVFTTATDSSSNSSQKREQPTRTISSPTSCEHRKVYTLGHLHDPYPTDHYHLEQPMPRPYRQVSFPDDDEEIVRINPREKIWMTGYEDYRHAPVRGKYLDHTEDADSYVRFAKGEVPKHDYNYPYVDSSDFGLGEDPKGRGGSVIKTQPSRGKSRRRKEDGERSRCEYCRDMFNHEENRRGHCQDAPDSVRTCIRRVSCMWCADSMLYHCMSDPEGDYTDPCSCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACYHCGVMCRCCGGKHKAAV", "length": 486 }, "evidence": [ { "id": "F1SIZ0", "url": "https://omabrowser.org/oma/group/F1SIZ0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3C2P8-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 2", "gene_name": "Spred2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTEETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEGSTTSSSTIHNEAELGDDDVFTTATDSSSNSSQKREPNTRTISSPTSCEHRRIYTLDPYPMDLYHPDQRLPRSYPQVTFPEDDEEIVRINPREKIWMTGYEDYRHAPVRGKYLDSTEDADSYVRFAKGEVPKHEYTYPYVDSSDFGFGEDPKGNVIKTQPPRAKSRRRKENGERSRCVYCRDMFNHEENRRGHCQDAPDAVRTCIRRVSCMWCADSMLYHCMSDPEGDYTDPCSCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACHHCGVMCRCCGGKHKAAA", "length": 410 }, "evidence": [ { "id": "F1SIZ0", "url": "https://omabrowser.org/oma/group/F1SIZ0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7Z698-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 2", "gene_name": "SPRED2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTEETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEGSTTSSSTIHNEAELGDDDVFTTATDSSSNSSQKREQPTRTISSPTSCEHRRIYTLGHLHDSYPTDHYHLDQPMPRPYRQVSFPDDDEEIVRINPREKIWMTGYEDYRHAPVRGKYPDPSEDADSSYVRFAKGEVPKHDYNYPYVDSSDFGLGEDPKGRGGSVIKTQPSRGKSRRRKEDGERSRCVYCRDMFNHEENRRGHCQDAPDSVRTCIRRVSCMWCADSMLYHCMSDPEGDYTDPCSCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACYHCGVMCRCCGGKHKAAA", "length": 418 }, "evidence": [ { "id": "F1SIZ0", "url": "https://omabrowser.org/oma/group/F1SIZ0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q924S7-1", "protein_name": "Sprouty-related, EVH1 domain-containing protein 2", "gene_name": "Spred2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTEETHPDDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPTFHHWKVDNRKFGLTFQSPADARAFDRGVRKAIEDLIEGSTTSSSTLHNEAELGDDDVFTTATDSSSNSSQKREPTTRTISSPTSCEHRKIYTLDPYPMDHYHPDQRLPRSYPQVTFPEDDEEIVRINPREKIWMTGYEDYRHAPVRGKYLDTTEDADSYVRFAKGEVPKHEYTYPYVDSSDFGFGEDPKGSVIKTQPPRAKSRRRKENGERSRCVYCRDMFNHEENRRGHCQDAPDAVRTCIRRVSCMWCADSMLYHCMSDPEGDYTDPCSCDTSDEKFCLRWMALIALSFLAPCMCCYLPLRACHRCGVMCRCCGGKHKAAA", "length": 410 }, "evidence": [ { "id": "F1SIZ0", "url": "https://omabrowser.org/oma/group/F1SIZ0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of intracellular signal transduction", "id": "GO:1902532", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902532", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ0", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" } ], "pmid": "" }, { "name": "negative regulation of ERK1 and ERK2 cascade", "id": "GO:0070373", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070373", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ0", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ0", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" } ], "pmid": "" }, { "name": "transport vesicle membrane", "id": "GO:0030658", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030658", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ0", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ0", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ0", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" }, { "id": "PS51488", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51488" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KBD", "eco_id": "ECO_0000259", "start_pos": 201, "end_pos": 256, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ0" }, { "id": "PS50229", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50229" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WH1", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 122, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 154, "end_pos": 156 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIU9-1", "uniprot_ac": "F1SIU9", "uniprot_id": "F1SIU9_PIG", "mass": { "chemical_mass": 137998.0, "monoisotopic_mass": 137998.0 }, "refseq": { "ac": "XP_020930546", "name": "period circadian protein homolog 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930546" }, "gene_names": [ { "name": "PER2", "type": "recommended", "evidence": [ { "id": "F1SIU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ] }, { "name": "PER2", "type": "synonym", "evidence": [ { "id": "XP_020930546", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930546" } ] } ], "protein_names": [ { "name": "Period circadian protein homolog 2", "type": "recommended", "evidence": [ { "id": "F1SIU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIU9/entry#names_and_taxonomy" } ] }, { "name": "Circadian clock protein PERIOD 2", "type": "synonym", "evidence": [ { "id": "F1SIU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIU9/entry#names_and_taxonomy" } ] }, { "name": "period circadian protein homolog 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020930546", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930546" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PER2", "url": "https://www.uniprot.org/uniprotkb/F1SIU9", "locus": { "chromosome": "15", "start_pos": 137793422, "end_pos": 137837070, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016338", "url": "https://www.ensembl.org/id/ENSSSCG00000016338" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016338", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016338", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00130", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00130", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154609", "url": "https://www.ncbi.nlm.nih.gov/gene/100154609", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048814", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048814", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154609", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154609", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ENCSMGR", "url": "https://omabrowser.org/oma/group/ENCSMGR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11269", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11269", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11269:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11269:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08447", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08447", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12114", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12114", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21353", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21353", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23170", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23170", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9932298", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020930546", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930546", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QN83", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QN83-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QN83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIU9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIU9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLGVLWQPSPGKDPGVGGGPLRKGQALSGSSMNGYADYAPSPGDPSKEHVEPGPRQVPLQEDVDMSGGSSGNETNENGSPGRDSQGSDCDDSGKELRTLAGPPGAHQGPDAFSLMMAKSEHNPSTSGCSSEPSTKADAHKELIKTLRELKVHLPAEKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMASEKQPCSAHVPAYTVEELESATSEFVVKNPEMFAAAVSLVTGKILYISDQVASIFHCKRDTFYDAKFVEFLAPHDVSVFHSSTSPYKLPPWSLCRGADSFTRECMEEKSFFCRVSVGKNHESEIRYHPFRMTPYLVQVRDPQGAEDQLCCVLLAERVHSGYEAPRIPPEKRIFTTTHSPNCLFQDVDERAVPLLGHLPQDLIETPVLVQLHPSDRPLMLAIHKKIVQSGGQPFDYSPIRFRARNGEYVTLDTSWSSFVNPWSRKVSFIIGRHRVRVGPLNEDVFSAQPCMEEKALQSGVQEFTEQIRRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSTGQEDPCRRRVEICKNDNKVKNESHYPGASGQQESQSAAATQSSSLAHVSTVPAAEKDSSGASLPEELACKNPPAGSYQQISCLDGVIRYLESCSEAATLKRKCEFPAHLPTPKASDKRKATASPGPHSAETASASKMNSRADVSTHLTSLTLPGKAESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDATSGPESLDCLAGPALPCSLGQDPEPFRKLGLTKEVLAAHTQKEEQSFLLKFKEIRKLNIFQSPCHHYLQERSRAQPSERAAPGLRNPSGVDSSWKKNGKNRKLKSKRVKPRDSSGSTGSGGPVPQRPPLLGLNATAWSPSDTSQSSCPSMPFPAPVPAYSLPVFPVPGTVAAAPHAGFAVPVDTQHEFAVQPPAFAGPLAPVLALVVPSYPFSSVASNLPQTFFPGQPSFPSQVTPASQSEFPGQTSFPKQPHACPRAEHGPPASRVATPATLPSAAGPAGRTSPPLFQSRGSSPLQLNLLQLEETPEGSASATGAAGAGPDCKPGSAWDRQPKALTTGEEPADAQNSDALSASSGLLHLLLHADVCSAAGSALSGSGASATSCSLGSGSQGCDASPSGTGSSDTGHSSKYFGSIDSSEKNHKAKVKADRAENERFIKSVLQEPVWLLAADSDDRVMMTYQMPARNVDTVLREDREKLRALRGLQPRFTDGQRQELQDVHPWMRSGGLPAALDVPECVYCGNEGKGGIGVPSEEHLPAPGLSEVADTKEEGSGPPLSHRNREQT", "length": 1290, "header": "tr|F1SIU9-1|F1SIU9_PIG Isoform 1 of Period circadian protein homolog 2 OS=Sus scrofa OX=9823 GN=PER2 PE=4 SV=4 CANONICAL=F1SIU9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QN83-1", "url": "https://www.uniprot.org/uniprotkb/F1SIU9/entry#A0A5G2QN83-1", "sequence": { "sequence": "MNGYADYAPSPGDPSKEHVEPGPRQVPLQEDVDMSGGSSGNETNENGSPGRDSQGSDCDDSGKELRTLAGPPGAHQGPDAFSLMMAKSEHNPSTSGCSSEPSTKADAHKELIKTLRELKVHLPAEKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMASEKQPCSAHVPAYTVEELESATSEFVVKNPEMFAAAVSLVTGKILYISDQVASIFHCKRDTFYDAKFVEFLAPHDVSVFHSSTSPYKLPPWSLCRGADSFTRECMEEKSFFCRVSVGKNHESEIRYHPFRMTPYLVQVRDPQGAEDQLCCVLLAERVHSGYEAPRIPPEKRIFTTTHSPNCLFQDVDERAVPLLGHLPQDLIETPVLVQLHPSDRPLMLAIHKKIVQSGGQPFDYSPIRFRARNGEYVTLDTSWSSFVNPWSRKVSFIIGRHRVRVGPLNEDVFSAQPCMEEKALQSGVQEFTEQIRRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSTGQEDPCRRRVEICKNDNKVKNESHYPGASGQQESQSAAATQSSSLAHVSTVPAAEKDSSGASLPEELACKNPPAGSYQQISCLDGVIRYLESCSEAATLKRKCEFPAHLPTPKASDKRKATASPGPHSAETASASKMNSRADVSTHLTSLTLPGKAESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDATSGPESLDCLAGPALPCSLGQDPEPFRKLGLTKEVLAAHTQKEEQSFLLKFKEIRKLNIFQSPCHHYLQERSRAQPSERAAPGLRNPSGVDSSWKKNGKNRKLKSKRVKPRDSSGSTGSGGPVPQRPPLLGLNATAWSPSDTSQSSCPSMPFPAPVPAYSLPVFPVPGTVAAAPHAGFAVPVDTQHEFAVQPPAFAGPLAPVLALVVPSYPFSSVASNLPQTFFPGQPSFPSQVTPASQSEFPGQTSFPKQPHACPATPATLPSAAGPAGRTSPPLFQSRGSSPLQLNLLQLEETPEGSASATGAAGAGPDCKPGSAWDRQPKALTTGEEPADAQNSDALSASSGLLHLLLHADVCSAAGSATSCSLGSGSQGCDASPSGTGSSDTGHSSKYFGSIDSSEKNHKAKVKADRAENERFIKSVLQEPVWLLAADSDDRVMMTYQMPARNVDTVLREDREKLRALRGLQPRFTDGQRQELQDVHPWMRSGGLPAALDVPECVYCGNEGKGGIGVPSEEHLPAPGLSEVADTKEEGSGPPLSHRNREQT", "length": 1239, "header": "tr|A0A5G2QN83-1|F1SIU9_PIG Computationally mapped isoform of Period circadian protein homolog 2 OS=Sus scrofa OX=9823 GN=PER2 PE=4 SV=2 CANONICAL=F1SIU9-1" }, "locus": { "chromosome": "15", "start_pos": 137826451, "end_pos": 137795844, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088445.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088445.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059776.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059776.2" } ] } }, { "isoform_ac": "A0A5G2RDQ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIU9/entry#A0A5G2RDQ5-1", "sequence": { "sequence": "MNGYADYAPSPGDPSKEHVEPGPRQVPLQEDVDMSGGSSGNETNENGSPGRDSQGSDCDDSGKELRTLAGPPGAHQGPDAFSLMMAKSEHNPSTSGCSSEPSTKADAHKELIKTLRELKVHLPAEKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMASEKQPCSAHVPAYTVEELESATSEFVVKNPEMFAAAVSLVTGKILYISDQVASIFHCKRDTFYDAKFVEFLAPHDVSVFHSSTSPYKLPPWSLCRGADSFTRECMEEKSFFCRVSVGKNHESEIRYHPFRMTPYLVQVRDPQGAEDQLCCVLLAERVHSGYEAPRIPPEKRIFTTTHSPNCLFQDVDERAVPLLGHLPQDLIETPVLVQLHPSDRPLMLAIHKKIVQSGGQPFDYSPIRFRARNGEYVTLDTSWSSFVNPWSRKVSFIIGRHRVRVGPLNEDVFSAQPCMEEKALQSGVQEFTEQIRRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSTGQEDPCRRRVEICKNDNKVKNESHYPGASGQQESQSAAATQSSSLAHVSTVPAAEKDSSGASLPEELACKNPPAGSYQQISCLDGVIRYLESCSEAATLKRKCEFPAHLPTPKASDKRKATASPGPHSAETASASKMNSRADVSTHLTSLTLPGKAESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDATSGPESLDCLAGPALPCSLGQDPEPFRKLGLTKEVLAAHTQKEEQSFLLKFKEIRKLNIFQSPCHHYLQERSRAQPSERAAPGLRNPSGVDSSWKKNGKNRKLKSKRVKPRDSSGSTGSGGPVPQRPPLLGLNATAWSPSDTSQSSCPSMPFPAPVPAYSLPVFPVPGTVAAAPHAGFAVPVDTQHEFAVQPPAFAGPLAPVLALVVPSYPFSSVASNLPQTFFPGQPSFPSQVTPASQSEFPGQTSFPKQPHACPRAEHGPPASRVATPATLPSAAGPAGRTSPPLFQSRGSSPLQLNLLQLEETPEGSASATGAAGAGPDCKPGSAWDRQPKALTTGEEPADAQNSDALSASSGLLHLLLHADVCSAAGSALSGSGASATSCSLGSGSQGCDASPSGTGSSDTGHSSKYFGSIDSSEKNHKAKVKADRAENERFIKSVLQEPVWLLAADSDDRVMMTYQMPARNVDTVLREDREKLRALRGLQPRFTDGQRQELQDVHPWMRSGGLPAALDVPECVYCGNEGKGGIGVPSEEHLPAPGLSEVADTKEEGSGPPLSHRNREQT", "length": 1258, "header": "tr|A0A5G2RDQ5-1|F1SIU9_PIG Computationally mapped isoform of Period circadian protein homolog 2 OS=Sus scrofa OX=9823 GN=PER2 PE=4 SV=1 CANONICAL=F1SIU9-1" }, "locus": { "chromosome": "15", "start_pos": 137826451, "end_pos": 137795844, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073681.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073681.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068884.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068884.1" } ] } }, { "isoform_ac": "F1SIU9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIU9/entry#F1SIU9-1", "sequence": { "sequence": "MLLGVLWQPSPGKDPGVGGGPLRKGQALSGSSMNGYADYAPSPGDPSKEHVEPGPRQVPLQEDVDMSGGSSGNETNENGSPGRDSQGSDCDDSGKELRTLAGPPGAHQGPDAFSLMMAKSEHNPSTSGCSSEPSTKADAHKELIKTLRELKVHLPAEKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMASEKQPCSAHVPAYTVEELESATSEFVVKNPEMFAAAVSLVTGKILYISDQVASIFHCKRDTFYDAKFVEFLAPHDVSVFHSSTSPYKLPPWSLCRGADSFTRECMEEKSFFCRVSVGKNHESEIRYHPFRMTPYLVQVRDPQGAEDQLCCVLLAERVHSGYEAPRIPPEKRIFTTTHSPNCLFQDVDERAVPLLGHLPQDLIETPVLVQLHPSDRPLMLAIHKKIVQSGGQPFDYSPIRFRARNGEYVTLDTSWSSFVNPWSRKVSFIIGRHRVRVGPLNEDVFSAQPCMEEKALQSGVQEFTEQIRRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSTGQEDPCRRRVEICKNDNKVKNESHYPGASGQQESQSAAATQSSSLAHVSTVPAAEKDSSGASLPEELACKNPPAGSYQQISCLDGVIRYLESCSEAATLKRKCEFPAHLPTPKASDKRKATASPGPHSAETASASKMNSRADVSTHLTSLTLPGKAESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDATSGPESLDCLAGPALPCSLGQDPEPFRKLGLTKEVLAAHTQKEEQSFLLKFKEIRKLNIFQSPCHHYLQERSRAQPSERAAPGLRNPSGVDSSWKKNGKNRKLKSKRVKPRDSSGSTGSGGPVPQRPPLLGLNATAWSPSDTSQSSCPSMPFPAPVPAYSLPVFPVPGTVAAAPHAGFAVPVDTQHEFAVQPPAFAGPLAPVLALVVPSYPFSSVASNLPQTFFPGQPSFPSQVTPASQSEFPGQTSFPKQPHACPRAEHGPPASRVATPATLPSAAGPAGRTSPPLFQSRGSSPLQLNLLQLEETPEGSASATGAAGAGPDCKPGSAWDRQPKALTTGEEPADAQNSDALSASSGLLHLLLHADVCSAAGSALSGSGASATSCSLGSGSQGCDASPSGTGSSDTGHSSKYFGSIDSSEKNHKAKVKADRAENERFIKSVLQEPVWLLAADSDDRVMMTYQMPARNVDTVLREDREKLRALRGLQPRFTDGQRQELQDVHPWMRSGGLPAALDVPECVYCGNEGKGGIGVPSEEHLPAPGLSEVADTKEEGSGPPLSHRNREQT", "length": 1290, "header": "tr|F1SIU9-1|F1SIU9_PIG Isoform 1 of Period circadian protein homolog 2 OS=Sus scrofa OX=9823 GN=PER2 PE=4 SV=4 CANONICAL=F1SIU9-1" }, "locus": { "chromosome": "15", "start_pos": 137836200, "end_pos": 137795844, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017793.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017793.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017312.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017312.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 961, "start_aa": "Thr", "end_pos": 961, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr961", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RDQ5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDQ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154609", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154609", "resource": "KEGG Pathway" }, { "id": "R-SSC-9932298", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "resource": "Reactome", "description": "Degradation of CRY and PER proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A5X2-1", "protein_name": "Period circadian protein homolog 2", "gene_name": "PER2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDCIEVRGFYSSTEEQNPEQQADISENISSLFSLKEQQKMSEYSGLASNHSQMIAEDSEIQPKPEHSPEVLQEDMEMSSGSSGNDFSGNETNENYSSGHDSHGHESDENGKDSAMLMESSDCHKSSSSNAFSLMIANSEHNQSSSGCSSEQSTKAKTQKELLKTLQELKAHLPAEKRIKGKSSVLTTLKYALKSIKQVKANEEYYQLLMINESQPSGLNVSSYTVEEVETITSEYIMKNADMFAVAVSLITGKIVYISDQAAAILRCKRSYFKNAKFVELLAPQDVSVFYTSTTPYRLPSWNICSRAESSTQDCMEEKSFFCRISAGKERENEICYHPFRMTPYLIKVQDPEVAEDQLCCVLLAEKVHSGYEAPRIPPDKRIFTTTHTPTCLFQDVDERAVPLLGYLPQDLIGTPVLVHLHPNDRPLMLAIHKKILQYGGQPFDYSPIRFCTRNGDYITMDTSWSSFINPWSRKVSFIIGRHKVRTGPLNEDVFAAPNYTEDRILHPSVQEITEQIYRLLLQPVHNSGSSGYGSLGSNGSHEHLMSVASSSDSTGNNNDDTQKDKTISQDARKVKTKGQHIFTENKGKLEYKREPSAAEKQNGPGGQVKDVIGKDTTATAAPKNVATEELAWKEQPVYSYQQISCLDSVIRYLESCNVPGTAKRKCEPSSSVNSSVHEQKASVNAIQPLGDSTVLKSSGKSSGPPVVGAHLTSLALPGKPESVVSLTSQCSYSSTIVHVGDKKPQPELEMIEDGPSGAEVLDTQLPAPPPSSTHVNQEKESFKKLGLTKEVLAVHTQKEEQSFLNKFKEIKRFNIFQSHCNYYLQDKPKGRPGERGGRGQRNGTSGMDQPWKKSGKNRKSKRIKPQESSDSTTSGTKFPHRFPLQGLNTTAWSPSDTSQASYSAMSFPTVMPAYPLPVFPAAAGTVPPAPETSVSGFNQLPDSGNTCSMQPSQFSAPLMTPVVALVLPNYVYPEMNNSLPQTLYHSQANFPTHPAFSSQTVFPAQPPFTTPSPFPQQAFFPTQPFHYNPPAEIEKVPVTETRNEPSRSCTPQSVGPQDQASPPLFQSRCSSPLNLLQLEENTKTVESGAPAGLHGALNEEGTIGKIMTTDAGSGKGSLPAESPMDAQNSDALSMSSVLLDILLQEDACSGTGSASSGSGVSAAAESLGSGSNGCDMSGSRTGSSETSHTSKYFGSIDSSENHHKTKMKAEIEESEHFIKYVLQDPIWLLMANTDDTVMMTYQLPSRDLETVLKEDKLKLKQMQKLQPKFTEDQKRELIEVHPWIQQGGLPKTVANSECIFCEDNIQSNFYTSYDEEIHEMDLNEMIEDSGENNLVPLSQVNEEQT", "length": 1345 }, "evidence": [ { "id": "F1SIU9", "url": "https://omabrowser.org/oma/group/F1SIU9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1N4I4-1", "protein_name": "Period circadian protein homolog 2", "gene_name": "PER2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MCVLCKESDGRCGQWTHSTPRPRPPSMQMRRHRRQWRALGAGAESGHVFHYVTAASPRRRRRRREALPNTRCFRPQRRRGRRAARGSSSGLVRTRLRPETFGLMMAKSEHHLSTSGCSSEQSTKADAHKELIKTLKELKVHLPADRKAKGKASTLATLKYALRSVKQVKANEEYYQLLMSSENHPCRTHVPSYTVHEIEGITSEFIMKNVDMFVAAVSLVTGKTLYISDQVASIFHCKRDAFYNAKFVEFLAPHDVSVFHSSTTPYKLPPWSDRRQADSFTQECMEEKSFFCRVSVGKSHESEIHYHPFRMTPYLAQVCERQGAESQLCCVLLAERVHSGYEAPRIPPEKRIFTTTHSPNCLFQDVDQRAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKIVQSGGQPFDYSPLRFRARNGEYITLDTSWSSFINPWSRKISFIIGRHRVRLGPLNEDVFSAPPGLEEKAPQPGVQELTEQIHRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSTGQEDPRRRRAETCKNGNKAKSKSHYPDESGEQKSNPASEMQSGSPTPMKAAAAVEKDSSGASLPEATPPEELACRDPPAGSYQQISCLDSVIRYLESCSEAATLKRKCEFPASLPTPQASDKRQALAGPGPHATEAASPSPVKSRTDASARLLSPPLPGRAQSVASLGSQCSYSSTIVHVGDKKLPPELEPLGDAAASRPESLECPAGPALPCGLSQDQEAFRKLGLTKEVLAAHTQKEEQSFLLRFREIRKLHVFQSRCHHYLQERSKGHLSNRTAPGLRNTPGIDSSWKKNGKNRKLKSKRVKPRDSSGSTGSGGPAPQRPPLVGLNTTAWSLSDTSQSSCPAMPFPGPVPAYSLPLFPAPGIVTAPGTVATGSGAAHTDLAVPVDAQQVLRVHPPPFASPLAPVMALVLPSCSFSPVTPALPPAFFPGQLNFVSEMPPASQPEFFPDRTSTPKQPCPCAPAERGPPALRMATPGTPPLAAGPPDRTSPALFQSRGSSPLQLNLMQLEEAPEGTAAATGAVGTVGAGADCKPGSSWDWQPKSPPTCKEPADAPNSDALSSSSGLLRLLLHGDLCSATGSALSRSQASATSCSLGSGSLGCDASGSRPGSSHTSHTSRYFGSSDSSENNPGAAVRAAVGGPERLLRCVLQDPVWLLAADTDDSVRMTYQMPARDLDTVLQEDREKLKALQRLQPRFTDAQKQELQDVHPWMRLGGMPTAIDVAGCVYCENEGEDNLCVSYEEDIPTPGLSEVTETKEEESRPPQGPETNGRCNPLPQGSSAASEVR", "length": 1311 }, "evidence": [ { "id": "F1SIU9", "url": "https://omabrowser.org/oma/group/F1SIU9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O15055-1", "protein_name": "Period circadian protein homolog 2", "gene_name": "PER2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNGYAEFPPSPSNPTKEPVEPQPSQVPLQEDVDMSSGSSGHETNENCSTGRDSQGSDCDDSGKELGMLVEPPDARQSPDTFSLMMAKSEHNPSTSGCSSDQSSKVDTHKELIKTLKELKVHLPADKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMSSEGHPCGADVPSYTVEEMESVTSEHIVKNADMFAVAVSLVSGKILYISDQVASIFHCKRDAFSDAKFVEFLAPHDVGVFHSFTSPYKLPLWSMCSGADSFTQECMEEKSFFCRVSVRKSHENEIRYHPFRMTPYLVKVRDQQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCLFQDVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQSGGQPFDYSPIRFRARNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAHPCTEEKALHPSIQELTEQIHRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGHEDSRRRRAEICKNGNKTKNRSHYSHESGEQKKKSVTEMQTNPPAEKKAVPAMEKDSLGVSFPEELACKNQPTCSYQQISCLDSVIRYLESCNEAATLKRKCEFPANVPALRSSDKRKATVSPGPHAGEAEPPSRVNSRTGVGTHLTSLALPGKAESVASLTSQCSYSSTIVHVGDKKPQPELEMVEDAASGPESLDCLAGPALACGLSQEKEPFKKLGLTKEVLAAHTQKEEQSFLQKFKEIRKLSIFQSHCHYYLQERSKGQPSERTAPGLRNTSGIDSPWKKTGKNRKLKSKRVKPRDSSESTGSGGPVSARPPLVGLNATAWSPSDTSQSSCPAVPFPAPVPAAYSLPVFPAPGTVAAPPAPPHASFTVPAVPVDLQHQFAVQPPPFPAPLAPVMAFMLPSYSFPSGTPNLPQAFFPSQPQFPSHPTLTSEMASASQPEFPSRTSIPRQPCACPATRATPPSAMGRASPPLFQSRSSSPLQLNLLQLEEAPEGGTGAMGTTGATETAAVGADCKPGTSRDQQPKAPLTRDEPSDTQNSDALSTSSGLLNLLLNEDLCSASGSAASESLGSGSLGCDASPSGAGSSDTSHTSKYFGSIDSSENNHKAKMNTGMEESEHFIKCVLQDPIWLLMADADSSVMMTYQLPSRNLEAVLKEDREKLKLLQKLQPRFTESQKQELREVHQWMQTGGLPAAIDVAECVYCENKEKGNICIPYEEDIPSLGLSEVSDTKEDENGSPLNHRIEEQT", "length": 1255 }, "evidence": [ { "id": "F1SIU9", "url": "https://omabrowser.org/oma/group/F1SIU9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O54943-1", "protein_name": "Period circadian protein homolog 2", "gene_name": "Per2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNGYVDFSPSPTSPTKEPGAPQPTQAVLQEDVDMSSGSSGNENCSTGRDSQGSDCDDNGKELRMLVESSNTHPSPDDAFRLMMTEAEHNPSTSGCSSEQSAKADAHKELIRTLKELKVHLPADKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMSSESQPCSVDVPSYSMEQVEGITSEYIVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVCSGLDSFTQECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQQGAESQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAAPPCPEEKTPHPSVQELTEQIHRLLMQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGQEESHRRRSGIFKTSGKIQTKSHVSHESGGQKEASVAEMQSSPPAQVKAVTTIERDSSGASLPKASFPEELAYKNQPPCSYQQISCLDSVIRYLESCSEAATLKRKCEFPANIPSRKATVSPGLHSGEAARPSKVTSHTEVSAHLSSLTLPGKAESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDMASGPESLDGAAGGLSQEKGPLQKLGLTKEVLAAHTQKEEQGFLQRFREVSRLSALQAHCQNYLQERSRAQASDRGLRNTSGLESSWKKTGKNRKLKSKRVKTRDSSESTGSGGPVSHRPPLMGLNATAWSPSDTSQSSCPSAPFPTAVPAYPLPVFQAPGIVSTPGTVVAPPAATHTGFTMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSYPFPPATPNLPQAFLPSQPHFPAHPTLASEITPASQAEFPSRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTLGTTGTAASGLDCTSGTSRDRQPKAPPTCNEPSDTQNSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSSSLGFGTSQSGAGSSDTSHTSKYFGSIDSSENNHKAKMIPDTEESEQFIKYVLQDPIWLLMANTDDSIMMTYQLPSRDLQAVLKEDQEKLKLLQRSQPRFTEGQRRELREVHPWVHTGGLPTAIDVTGCVYCESEEKGNICLPYEEDSPSPGLCDTSEAKEEEGEQLTGPRIEAQT", "length": 1257 }, "evidence": [ { "id": "F1SIU9", "url": "https://omabrowser.org/oma/group/F1SIU9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z301-1", "protein_name": "Period circadian protein homolog 2", "gene_name": "Per2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNGYVDFSPSPTSPTQEPGEPQPTQAVLQEDVDMSSGSSGNENCSTGRDSQGSDCDDSGKELRMLVESSNTHPSPDDTFRLMMTEAEHNPSTSGCSSEQSAKADAHKELIRTLRELKVHLPADKKAKGKASTLATLKYALRSVKQVKANEEYYQLLMSSESQPCSVDVPSYTMEQVEGITSEYIVKNSDMFAVAVSLVSGKILYISNQVAPIFHCKKDAFSDAKFVEFLAPHDVSVFHSYTTPYKLPPWSVSSGLDSFTQECMEEKSFFCRVSVGKHHENEIRYQPFRMTPYLVKVQEQKGAASQLCCLLLAERVHSGYEAPRIPPEKRIFTTTHTPNCLFQDVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQASGQPFDYSPIRFRTRNGEYITLDTSWSSFINPWSRKISFIIGRHKVRVGPLNEDVFAASPCPEEKTPHPSVQELTEQIHRLLMQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSNGQEESHWRRSGIFKTSGKSQSKSHFSPESGGQKEASVAEMQSSPPAQVRSVTTMERDSSGASLPKASFPEELTYKSQPPCSYQQISCLDSVIRYLESCNEAATLKRKCEFPANIPSRKATVSPGLHSGEAARSSKVTSHTEVSAHLSSLALPGKAESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDVASGPESQDDAAGGLSQEKGSLQKLGLTKEVLAAHTQREEQGFLQRFREVSRLGALQAHCQNYLQERSRAPASDRGLRNASGIESSWKKTGKNRKLKSKRVKTRDSSESTGSGGPVSHRPPLVGLNATAWSPSDTSQSSCPSAPFPAPVPAYPLPVFPAPGIVSTPGTVVAPPAAAHTGFTMPVVPMGTQPEFAVQPLPFAAPLAPVMAFMLPSYPFPPATPNLPQAFFPSQPHFPAHPTLASEITPASQAEFPSRTSMLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPESSTGAAGTLGTTGTAASGLDCTSGASRDRQPKAPPTCSEPSDTQNSDAISTSSDLLNLLLGEDLCSATGSALSRSGASATSDSLGSSSLGCDTSRSGAGSSDTSHTSKYFGSIDSSENNHKAKMITDTEESEQFIKYVLQDPIWLLMANTDDNIMMTYQLPSRDLQAVLKEDQEKLKLLQRSQPHFTEGQRRELREVHPWVHTGGLPTAIDVTGCVYCESEEKGNLCLPYEEDSPSLGLCDTSEAKEEESGQLANPRKEAQT", "length": 1257 }, "evidence": [ { "id": "F1SIU9", "url": "https://omabrowser.org/oma/group/F1SIU9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" }, { "name": "rhythmic process", "id": "GO:0048511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048511", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" }, { "name": "circadian regulation of gene expression", "id": "GO:0032922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032922", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" }, { "name": "entrainment of circadian clock by photoperiod", "id": "GO:0043153", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043153", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" }, { "name": "transcription corepressor binding", "id": "GO:0001222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001222", "evidence": [ { "database": "UniProtKB", "id": "F1SIU9", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 520, "end_pos": 522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 557, "end_pos": 559, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" }, { "start_pos": 859, "end_pos": 861, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIU9" }, { "id": "SM00091", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00091" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PAS", "eco_id": "ECO_0000259", "start_pos": 213, "end_pos": 280, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 961 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 520, "end_pos": 522 }, { "start_pos": 557, "end_pos": 559 }, { "start_pos": 73, "end_pos": 75 }, { "start_pos": 78, "end_pos": 80 }, { "start_pos": 859, "end_pos": 861 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJZ3-1", "uniprot_ac": "F1SJZ3", "uniprot_id": "F1SJZ3_PIG", "mass": { "chemical_mass": 19297.0, "monoisotopic_mass": 19297.0 }, "refseq": { "ac": "XP_003483895", "name": "biorientation of chromosomes in cell division protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483895" }, "gene_names": [ { "name": "BOD1", "type": "recommended", "evidence": [ { "id": "F1SJZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3" } ] }, { "name": "BOD1", "type": "synonym", "evidence": [ { "id": "XP_003483895", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483895" } ] } ], "protein_names": [ { "name": "Biorientation of chromosomes in cell division 1", "type": "synonym", "evidence": [ { "id": "F1SJZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3/entry#names_and_taxonomy" } ] }, { "name": "biorientation of chromosomes in cell division protein 1", "type": "synonym", "evidence": [ { "id": "XP_003483895", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483895" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJZ3", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BOD1", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000016982", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016982", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521048", "url": "https://www.ncbi.nlm.nih.gov/gene/100521048", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055264", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055264", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521048", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521048", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IICQVVD", "url": "https://omabrowser.org/oma/group/IICQVVD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJZ3", "url": "https://www.orthodb.org/?gene=F1SJZ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47391", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47391", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47391:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47391:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483895", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483895", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RI00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RI00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RI00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RI00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJZ3", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJZ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADGGGGSGGTGAVGGGGSGQASAGAATGATGAGGSGGPINPASLPPGDPQLIALIVEQLKSRGLFDSFRRDCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPTMNKNQLRNGLRQSVVQSGMLEAGVDRIISQVVDPKLNHIFRPQIERAIHEFLAAQKKEAVPAPPPEPESQDPPAPSQDAS", "length": 186, "header": "tr|F1SJZ3-1|F1SJZ3_PIG Isoform 1 of Biorientation of chromosomes in cell division 1 OS=Sus scrofa OX=9823 GN=BOD1 PE=3 SV=3 CANONICAL=F1SJZ3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RI00-1", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3/entry#A0A5G2RI00-1", "sequence": { "sequence": "MADGGGGSGGTGAVGGGGSGQASAGAATGATGAGGSGGPINPASLPPGDPQLIALIVEQLKSRGLFDSFRRDCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPTMNKNQLRNGLRQSVVQICLTHFGSSTK", "length": 133, "header": "tr|A0A5G2RI00-1|F1SJZ3_PIG Computationally mapped isoform of Biorientation of chromosomes in cell division 1 OS=Sus scrofa OX=9823 GN=BOD1 PE=3 SV=1 CANONICAL=F1SJZ3-1" }, "locus": { "chromosome": "16", "start_pos": 50742656, "end_pos": 50734725, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067993.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067993.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071087.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071087.1" } ] } }, { "isoform_ac": "F1SJZ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3/entry#F1SJZ3-1", "sequence": { "sequence": "MADGGGGSGGTGAVGGGGSGQASAGAATGATGAGGSGGPINPASLPPGDPQLIALIVEQLKSRGLFDSFRRDCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPTMNKNQLRNGLRQSVVQSGMLEAGVDRIISQVVDPKLNHIFRPQIERAIHEFLAAQKKEAVPAPPPEPESQDPPAPSQDAS", "length": 186, "header": "tr|F1SJZ3-1|F1SJZ3_PIG Isoform 1 of Biorientation of chromosomes in cell division 1 OS=Sus scrofa OX=9823 GN=BOD1 PE=3 SV=3 CANONICAL=F1SJZ3-1" }, "locus": { "chromosome": "16", "start_pos": 50741647, "end_pos": 50734725, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018492.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018492.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017992.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017992.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RI00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RI00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521048", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521048", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XX70-1", "protein_name": "Biorientation of chromosomes in cell division 1", "gene_name": "BOD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSESGGAGGAAPGGGGGGAGSGGGPGNAGGAASGSGPGATNPASLPPGDAQLIAIIVEQLKSRGLFDGFRRDCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPTMNKNQLRNGLRQSVIQSGMLEAGVDRIISQVVDPKLNHIFRPQIERAIHEFLAAQKKEESVPAPPPEPENKDPPAPSQDAS", "length": 187 }, "evidence": [ { "id": "F1SJZ3", "url": "https://omabrowser.org/oma/group/F1SJZ3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5SQY2-1", "protein_name": "Biorientation of chromosomes in cell division protein 1", "gene_name": "Bod1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADGAGAGAAGQASGPSGGSSGAGGPVNPASLPPGDPQLIALIVEQLKSRGLFDSFRRDCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPAMNKNQLRNGLRQSVVQSGMLEAGVDRIISQVVDPKLNHIFRPQIERAIHEFLAAQKKEAVPAPPPEPESQDPPAPSQDAS", "length": 173 }, "evidence": [ { "id": "F1SJZ3", "url": "https://omabrowser.org/oma/group/F1SJZ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6AYJ2-1", "protein_name": "Biorientation of chromosomes in cell division protein 1", "gene_name": "Bod1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSAGAGAAGQASGPAGGSSGAGGTVNPASLPPGDPQLIALIVEQLKSRGLFDSFRRDCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPAMNKNQLRNGLRQSVVQSGMLEAGVDRIISQVVDPKLNHIFRPQIERAIHEFLAAQKKEAVPAPPPEPEGQDPPAPSQDAS", "length": 173 }, "evidence": [ { "id": "F1SJZ3", "url": "https://omabrowser.org/oma/group/F1SJZ3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96IK1-1", "protein_name": "Biorientation of chromosomes in cell division protein 1", "gene_name": "BOD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADGGGGGGTGAVGGGGTSQASAGAATGATGASGGGGPINPASLPPGDPQLIALIVEQLKSRGLFDSFRRDCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPTMNKNQLRNGLRQSVVQSGMLEAGVDRIISQVVDPKLNHIFRPQIERAIHEFLAAQKKAAVPAPPPEPEGQDPPAPSQDTS", "length": 185 }, "evidence": [ { "id": "F1SJZ3", "url": "https://omabrowser.org/oma/group/F1SJZ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ3", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ3", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJZ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJZ3" }, { "id": "PF05205", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05205" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BOD1/SHG1", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 151, "start_aa": "Ile", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFK2-1", "uniprot_ac": "F1SFK2", "uniprot_id": "F1SFK2_PIG", "mass": { "chemical_mass": 50597.0, "monoisotopic_mass": 50597.0 }, "refseq": { "ac": "XP_020925646", "name": "lipase member H", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925646" }, "gene_names": [ { "name": "LIPH", "type": "recommended", "evidence": [ { "id": "F1SFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ] }, { "name": "LIPH", "type": "synonym", "evidence": [ { "id": "XP_020925646", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925646" } ] } ], "protein_names": [ { "name": "Lipase H", "type": "synonym", "evidence": [ { "id": "F1SFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFK2/entry#names_and_taxonomy" } ] }, { "name": "lipase member H", "type": "synonym", "evidence": [ { "id": "XP_020925646", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925646" } ] } ], "function": [ { "annotation": "Hydrolyzes specifically phosphatidic acid (PA) to produce 2-acyl lysophosphatidic acid (LPA; a potent bioactive lipid mediator) and fatty acid. Does not hydrolyze other phospholipids, like phosphatidylserine (PS), phosphatidylcholine (PC) and phosphatidylethanolamine (PE) or triacylglycerol (TG).", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UIV2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIV2#function" }, { "database": "UniProtKB", "id": "ARBA00049600", "url": "https://www.uniprot.org/uniprotkb/ARBA00049600#function" }, { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LIPH", "url": "https://www.uniprot.org/uniprotkb/F1SFK2", "locus": { "chromosome": "13", "start_pos": 123371860, "end_pos": 123419434, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011793", "url": "https://www.ensembl.org/id/ENSSSCG00000011793" } ] } } ], "crossref": [ { "id": "F1SFK2", "url": "https://alphafold.ebi.ac.uk/entry/F1SFK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011793", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011793", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00707", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00707", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100737989", "url": "https://www.ncbi.nlm.nih.gov/gene/100737989", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013818", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013818", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737989", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737989", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DALHTDM", "url": "https://omabrowser.org/oma/group/DALHTDM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFK2", "url": "https://www.orthodb.org/?gene=F1SFK2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11610", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11610", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11610:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11610:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00151", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00151", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1483166", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483166", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020925646", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925646", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "40943", "url": "https://www.rhea-db.org/rhea/40943", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1UIV2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UIV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIV2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SFK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKLFFLISLTCLVRSDTDETCPSFTKLSFHSAVVGTGLSVKLMLYTRRNPTCAQAINSTALGNLNMTQKTTFIVHGFRPTGSPPIWMEDLVAGLLSVEDMNVVVVDWNRGATTVMYNHASSKTRKVAVVLKEFIDQMLAGGASLDDIYMIGVSLGAHIAGFVGKMYDGQLGRITGLDPAGPLFNGRPPEDRLDPGDAQFIDVIHSDIDALGYKEPLGNIDFYPNGGLDQPGCPKTIFGGMQYFKCDHQRSVYLYLSSLREKCTITAYPCDSYRDYRNGKCVHCGTPQMESCPLLGYYADNWKDYLRKKDPPMTKAFFDTAGEKPFCIYHYFVDIITWNKNIRRGSITIKLRDKAGNTTESKINHEPATFQKYHQVSLLARFSQDLDKVSAISLVFSTGSVIGPKYKLRILRMKLRSLAHPERPQLCRYDLVLMENVETVFQPILCPKLHM", "length": 451, "header": "tr|F1SFK2-1|F1SFK2_PIG Isoform 1 of Lipase H OS=Sus scrofa OX=9823 GN=LIPH PE=3 SV=3 CANONICAL=F1SFK2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UIV2-1", "url": "https://www.uniprot.org/uniprotkb/F1SFK2/entry#A0A4X1UIV2-1", "sequence": { "sequence": "MLKLFFLISLTCLVRSDTDETCPSFTKLSFHSAVVGTGLSVKLMLYTRRNPTCAQAINSTALGNLNMTQKTTFIVHGFRPTGSPPIWMEDLVAGLLSVEDMNVVVVDWNRGATTVMYNHASSKTRKVAVVLKEFIDQMLAGGASLDDIYMIGVSLGAHIAGFVGKMYDGQLGRITALGYKEPLGNIDFYPNGGLDQPGCPKTIFGGMQYFKCDHQRSVYLYLSSLREKCTITAYPCDSYRDYRNGKCVHCGTPQMESCPLLGYYADNWKDYLRKKDPPMTKAFFDTAGEKPFCIYHYFVDIITWNKNIRRGSITIKLRDKAGNTTESKINHEPATFQKYHQVSLLARFSQDLDKVSAISLVFSTGSVIGPKYKLRILRMKLRSLAHPERPQLCRYDLVLMENVETVFQPILCPKLHM", "length": 417, "header": "tr|A0A4X1UIV2-1|F1SFK2_PIG Computationally mapped isoform of Lipase H OS=Sus scrofa OX=9823 GN=LIPH PE=3 SV=1 CANONICAL=F1SFK2-1" }, "locus": { "chromosome": "13", "start_pos": 123419325, "end_pos": 123373541, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075657.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075657.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071071.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071071.1" } ] } }, { "isoform_ac": "F1SFK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SFK2/entry#F1SFK2-1", "sequence": { "sequence": "MLKLFFLISLTCLVRSDTDETCPSFTKLSFHSAVVGTGLSVKLMLYTRRNPTCAQAINSTALGNLNMTQKTTFIVHGFRPTGSPPIWMEDLVAGLLSVEDMNVVVVDWNRGATTVMYNHASSKTRKVAVVLKEFIDQMLAGGASLDDIYMIGVSLGAHIAGFVGKMYDGQLGRITGLDPAGPLFNGRPPEDRLDPGDAQFIDVIHSDIDALGYKEPLGNIDFYPNGGLDQPGCPKTIFGGMQYFKCDHQRSVYLYLSSLREKCTITAYPCDSYRDYRNGKCVHCGTPQMESCPLLGYYADNWKDYLRKKDPPMTKAFFDTAGEKPFCIYHYFVDIITWNKNIRRGSITIKLRDKAGNTTESKINHEPATFQKYHQVSLLARFSQDLDKVSAISLVFSTGSVIGPKYKLRILRMKLRSLAHPERPQLCRYDLVLMENVETVFQPILCPKLHM", "length": 451, "header": "tr|F1SFK2-1|F1SFK2_PIG Isoform 1 of Lipase H OS=Sus scrofa OX=9823 GN=LIPH PE=3 SV=3 CANONICAL=F1SFK2-1" }, "locus": { "chromosome": "13", "start_pos": 123419325, "end_pos": 123373541, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012905.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012905.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012564.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012564.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UIV2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UIV2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737989", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737989", "resource": "KEGG Pathway" }, { "id": "R-SSC-1483166", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483166", "resource": "Reactome", "description": "Synthesis of PA" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1ABJ4-1", "protein_name": "Lipase H", "gene_name": "LIPH", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLWLCVTFFCLLYGVKTDPKETCPAFTVLSFSSALIGTDLEVKLMLYTRQNEDCAEELNSTASKYLDLTKKTTFIIHGYRPTGSAPVWIPDLVHLLLSEEDMNIIVVDWNRGATTIIYSNASRNGKKVAEILKKFMDEMLINGASLDSIHMIGVSLGAHISGLVGQMFGGQLGRITGLDPAGPLYRGKPPSERLDPTDAQFVDVIHSDTDGLGYADALGHVDFYPNGGTDQPGCPPTVFAGLKYFKCDHQRSVFLFMASLKKSCNITAYPCESYRSYRRGKCTSCETFQPMPCPILGYYAHKWKSHLTQQSHPVTNMYFDTADEEPFCLYHYFVDIVTWNKGTRRGMLSVVLADGTGKKAESRVNHEAAAFQQYNHISLLVGFNQDFENITRISMTFSTGSVIGPKFKLRILQMRFRSLSNPERPPLCRYDVVLTENAERSFRPIPCAGRRGAAAADG", "length": 458 }, "evidence": [ { "id": "F1SFK2", "url": "https://omabrowser.org/oma/group/F1SFK2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7JNZ2-1", "protein_name": "Lipase member H", "gene_name": "Liph", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLRLYFLISLLCLVKSDTDETCPSFTRLSFHSAVVGTGLNVRLMLYTQRNQTCAQLINSTALGSLNVTKKTTFIIHGFRPTGSPPVWMEELVQSLLNVQEMNVVVVDWNRGATTVIYTHASGKTRKVALILKEFIDQMLAKGASLDDVYIIGVSLGAHIAGFVGEMYAGKLGRITGLDPAGPLFNGKPPEDRLDPSDAQFVDVIHSDTDALGYKEPLGSIDFYPNGGLDQPGCPKTIFGGMKYFKCDHQMSVFLYIASLQNNCSISAYPCDSYRDYRNGKCVSCGVGQMVACPLLGYYADNWKDYLMDKDPPMMKAFFDTAEKKPFCMYHYFVDIISWNKNVRRGFITIKLRGEDGNITESRIDHEPSTFQKYHQVSLLARFNQDLDKVAEISLLFSTKSVVGPKYKLRVLRMKLRSLVHPDRPHLCRYDLVLMENVETFFQPILCAK", "length": 448 }, "evidence": [ { "id": "F1SFK2", "url": "https://omabrowser.org/oma/group/F1SFK2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q32PY2-1", "protein_name": "Lipase member H", "gene_name": "Liph", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLCFLLSFMCLVKSDTDETCPSFTRLSFHSAVVGTGLSVRLMLYTQRDQTCAQVINSTALGSLNVTKKTTFIIHGFRPTGSPPVWMEELVQSLISVQEMNVVVVDWNRGATTVIYPHASSKTRKVALILKEFIDQMLAKGASLDNIYMIGVSLGAHIAGFVGEMYSGKLGRITGLDPAGPLFNGRPPEDRLDPSDAQFVDVIHSDTDALGYREALGHIDFYPNGGLDQPGCPKTIFGGIKYFKCDHQMSVFLYLASLQNNCSITAYPCDSYRDYRNGKCVSCGAGHIVSCPSLGYYADNWREYLWDRDPPMTKAFFDTAETKPYCIYHYFVDIISWNKSVRRGFITIKLRGEDGNITESKIDHEPSAFQKYHQVSLLARFNRDLDKVAEISLLFSTKSVVGPKYKLRVLRMKLRSLAHPDRPHLCRYDLVLMENVETFFQPILCSKQQM", "length": 451 }, "evidence": [ { "id": "F1SFK2", "url": "https://omabrowser.org/oma/group/F1SFK2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DBU8-1", "protein_name": "Lipase member H", "gene_name": "liph", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIYRKIIWGILYVTLMLFDTHRAQECEEMTDLNFKDSLAGTSLKVRLLLYTRADPSCGQLLSHQEPFSNSQFNVSSVTTFLIHGYRPTGSPPVWMKQFVEFLLNRRDMNVIVVDWNRGATNMNYWQVVKNTRKVANNLTDLIQKMKDNGANLSSIHMIGVSLGAHISGFTGANFNGEIGRITALDPAGPEFNGRPPEDRLDPSDALFVEALHTDMDALGYRNLLGHIDYYANGGADQPGCPKTILSGSEYFKCDHQRSVFLYMSSVNGSCPIIAYPCESYTDFQDGTCMDCGKFKSAGCPIFGYDSVRWRDTLVQLEQTRTYFQTNKASPFCKVGYKVDIVSWNQKTHWGYLTIKLSNGTEETQVELNHKSLKFERFQETSVLAQFERDIQPVKKITLKFCPRKGLRPRKKLRLLHIRLTPLQNHLRPLCRYDLLLEESKDVTFKPIPCEDSNF", "length": 454 }, "evidence": [ { "id": "F1SFK2", "url": "https://omabrowser.org/oma/group/F1SFK2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8CIV3-1", "protein_name": "Lipase member H", "gene_name": "Liph", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRLCFFISFMCLVKSDTDETCPSFTRLSFHSAVVGTGLSVRLMLYTQRDQTCAQIINSTALGSLNVTKKTTFIIHGFRPTGSPPVWIEELVQSLISVQEMNVVVVDWNRGATTVIYPHASSKTRQVASILKEFIDQMLVKGASLDNIYMIGVSLGAHIAGFVGESYEGKLGRVTGLDPAGPLFNGRPPEERLDPSDALFVDVIHSDTDALGYKEALGHIDFYPNGGLDQPGCPKTIFGGIKYFKCDHQMSVYLYLASLQNNCSITAYPCDSYRDYRNGKCVSCGAGQIVPCPRVGYYADSWKEYLWDRDPPMTKAFFDTAETKPYCMYHYFVDIVSWNKSVRRGFITIKLRGEDGNITESKIDHEPSAFEKYHQVSLLARFNRDLDKVAEISLLFSTGSVVGPKYKLRVLQMKLRSLAHPDRPHLCRYDLVLMENVETSFQPILCSQQQM", "length": 451 }, "evidence": [ { "id": "F1SFK2", "url": "https://omabrowser.org/oma/group/F1SFK2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WWY8-1", "protein_name": "Lipase member H", "gene_name": "LIPH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRFYLFISLLCLSRSDAEETCPSFTRLSFHSAVVGTGLNVRLMLYTRKNLTCAQTINSSAFGNLNVTKKTTFIVHGFRPTGSPPVWMDDLVKGLLSVEDMNVVVVDWNRGATTLIYTHASSKTRKVAMVLKEFIDQMLAEGASLDDIYMIGVSLGAHISGFVGEMYDGWLGRITGLDPAGPLFNGKPHQDRLDPSDAQFVDVIHSDTDALGYKEPLGNIDFYPNGGLDQPGCPKTILGGFQYFKCDHQRSVYLYLSSLRESCTITAYPCDSYQDYRNGKCVSCGTSQKESCPLLGYYADNWKDHLRGKDPPMTKAFFDTAEESPFCMYHYFVDIITWNKNVRRGDITIKLRDKAGNTTESKINHEPTTFQKYHQVSLLARFNQDLDKVAAISLMFSTGSLIGPRYKLRILRMKLRSLAHPERPQLCRYDLVLMENVETVFQPILCPELQL", "length": 451 }, "evidence": [ { "id": "F1SFK2", "url": "https://omabrowser.org/oma/group/F1SFK2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "lipase activity", "id": "GO:0016298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016298", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" }, { "name": "carboxylic ester hydrolase activity", "id": "GO:0052689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052689", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" }, { "name": "heparin binding", "id": "GO:0008201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008201", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" }, { "name": "phospholipase activity", "id": "GO:0004620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004620", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" }, { "name": "phosphatidic acid biosynthetic process", "id": "GO:0006654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006654", "evidence": [ { "database": "UniProtKB", "id": "F1SFK2", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" }, { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "40943", "name": "", "equation": "1-hexadecanoyl-2-(9Z-octadecenoyl)-sn-glycero-3-phosphate + H2O = 2-(9Z-octadecenoyl)-sn-glycero-3-phosphate + hexadecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40943", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40943" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFK2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 451, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFK2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFK2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" }, { "id": "PF00151", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00151" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipase", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 326, "start_aa": "Thr", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "F1SFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFK2#function" }, { "id": "F1SFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" }, { "id": "PIRSR000865-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000865-2" } ], "binding_site_uniprot": 192, "amino_acid": "Arg", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 192, "end_pos": 192, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFK2#function" }, { "id": "F1SFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" }, { "id": "PIRSR000865-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000865-2" } ], "binding_site_uniprot": 194, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 194, "end_pos": 194, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFK2#function" }, { "id": "F1SFK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFK2" }, { "id": "PIRSR000865-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000865-2" } ], "binding_site_uniprot": 197, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 197, "end_pos": 197, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 357, "end_pos": 359 }, { "start_pos": 58, "end_pos": 60 }, { "start_pos": 66, "end_pos": 68 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKY2-1", "uniprot_ac": "F1SKY2", "uniprot_id": "F1SKY2_PIG", "mass": { "chemical_mass": 31192.0, "monoisotopic_mass": 31192.0 }, "refseq": { "ac": "NP_001231271", "name": "omega-amidase NIT2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231271" }, "gene_names": [ { "name": "NIT2", "type": "recommended", "evidence": [ { "id": "F1SKY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKY2" } ] }, { "name": "NIT2", "type": "synonym", "evidence": [ { "id": "NP_001231271", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231271" } ] } ], "protein_names": [ { "name": "Omega-amidase NIT2", "type": "recommended", "evidence": [ { "id": "F1SKY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKY2/entry#names_and_taxonomy" } ] }, { "name": "3.5.1.3", "type": "synonym", "evidence": [ { "id": "F1SKY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKY2/entry#names_and_taxonomy" } ] }, { "name": "Nitrilase homolog 2", "type": "synonym", "evidence": [ { "id": "F1SKY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKY2/entry#names_and_taxonomy" } ] }, { "name": "omega-amidase NIT2", "type": "synonym", "evidence": [ { "id": "NP_001231271", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231271" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKY2", "url": "https://www.uniprot.org/uniprotkb/F1SKY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NIT2", "url": "https://www.uniprot.org/uniprotkb/F1SKY2", "locus": { "chromosome": "13", "start_pos": 158630913, "end_pos": 158653147, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011968", "url": "https://www.ensembl.org/id/ENSSSCG00000011968" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011968", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011968", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07572", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07572", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100625406", "url": "https://www.ncbi.nlm.nih.gov/gene/100625406", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036526", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036526", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625406", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625406", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MQSKPYA", "url": "https://omabrowser.org/oma/group/MQSKPYA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKY2", "url": "https://www.orthodb.org/?gene=F1SKY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23088", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23088", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23088:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23088:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00795", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00795", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231271", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231271", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "32963", "url": "https://www.rhea-db.org/rhea/32963", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "59412", "url": "https://www.rhea-db.org/rhea/59412", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1UVF7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UVF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UVF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UVF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKY2", "url": "https://www.uniprot.org/uniprotkb/F1SKY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLLDKAMATFRLALIQLHVSSVKSDNLTRACGFIQEAAKQGAKIISLPECFNSPYGTKYFPEYAEKIPGDSTQKLSEVAKECGVYVIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKLHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRGRAVDNQVYVATASPARDDKASYVAWGHSTIVSPWGEVLAKAGTEEKIVYADIDLKKLAEIRQQIPIFSQKRSDLYAVEVKKP", "length": 283, "header": "tr|F1SKY2-1|F1SKY2_PIG Isoform 1 of Omega-amidase NIT2 OS=Sus scrofa OX=9823 GN=NIT2 PE=1 SV=3 CANONICAL=F1SKY2-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UVF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKY2/entry#A0A4X1UVF7-1", "sequence": { "sequence": "MVLLDKAMATFRLALIQLHVSSVKSDNLTRACGFIQEAAKQGAKIISLPECFNSPYGTKYFPEYAEKIPGDSTQKLSEVAKECGVYVIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKLHLFDIDVPGKITFQESKTLSPGDSFSTFDTRCQLLVYPGAFNLTTGPAHWELLQRGRAVDNQVYVATASPARDDKASYVAWGHSTIVSPWGEVLAKAGTEEKIVYADIDLKKLAEIRQQIPIFSQKRSDLYAVEVKKP", "length": 258, "header": "tr|A0A4X1UVF7-1|F1SKY2_PIG Computationally mapped isoform of Omega-amidase NIT2 OS=Sus scrofa OX=9823 GN=NIT2 PE=1 SV=1 CANONICAL=F1SKY2-1" }, "locus": { "chromosome": "13", "start_pos": 158653076, "end_pos": 158632068, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087415.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087415.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070399.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070399.1" } ] } }, { "isoform_ac": "F1SKY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKY2/entry#F1SKY2-1", "sequence": { "sequence": "MVLLDKAMATFRLALIQLHVSSVKSDNLTRACGFIQEAAKQGAKIISLPECFNSPYGTKYFPEYAEKIPGDSTQKLSEVAKECGVYVIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKLHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRGRAVDNQVYVATASPARDDKASYVAWGHSTIVSPWGEVLAKAGTEEKIVYADIDLKKLAEIRQQIPIFSQKRSDLYAVEVKKP", "length": 283, "header": "tr|F1SKY2-1|F1SKY2_PIG Isoform 1 of Omega-amidase NIT2 OS=Sus scrofa OX=9823 GN=NIT2 PE=1 SV=3 CANONICAL=F1SKY2-1" }, "locus": { "chromosome": "13", "start_pos": 158653076, "end_pos": 158632068, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013096.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013096.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012751.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012751.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UVF7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UVF7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625406", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625406", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XIL3-1", "protein_name": "omega-amidase", "gene_name": "NIT2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQAARGAMANFRLALIQLHVSAVKSDNLQRACGLIREASAKGAKVVALPECFNSPYGTQYFKEYAEKIPGESTQKLSAVAKECSIYLIGGSIPEEDGGKLYNTCTVFGPDGAILAKHRKIHLFDINVPGKIQFKESETLSPGDSFSMFDTPYCKVGLGICYDIRFAELAQIYGQKGCQLLIYPGAFNMTTGPAHWELLQRGRAVDNQVYVATVSPARDEKASYVAWGHSTVVNPWGEVIAKAGAEETVIYTDIDLKKLAEIRQQIPILSQKRYDLYGIEMKK", "length": 282 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MJ59-1", "protein_name": "Omega-amidase NIT2", "gene_name": "NIT2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVLPGRAMATFRLALIQLQVSSIKSENLTRACGLIREASKQGAQIVSLPECFNSPYGTKYFPDYAEKIPGDSTQKLSEVAKECSMYVIGGSIPEKDAGKLYNTCAVFGPDGTLLVKHRKLHLFDIDVPGKITFQESETLSPGDSFSSFDTPYCRVGLGICYDIRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRGRAVDNQVYVATASPARDEKASYVAWGHSTVVNPWGEVLAKAGTEETIVYADIDLKKLAEIRQQIPIFSQKRSDLYAVEAKKS", "length": 283 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P49954-1", "protein_name": "Omega-amidase NIT3", "gene_name": "NIT3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSASKILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTIDTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDPRGKIVAEAGEGEEIIYAELDPEVIESFRQAVPLTKQRRFDVYSDVNAH", "length": 291 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q497B0-1", "protein_name": "Omega-amidase NIT2", "gene_name": "Nit2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSTFRLALIQLQVSSIKSDNITRACSLVREAAKQGANIVSLPECFNSPYGTNYFPEYAEKIPGESTKKLSEVAKENSIYLIGGSIPEEDDGKLYNTCAVFGPDGNLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYARRGCQLLVYPGAFNMTTGPAHWELLQRARAVDNQVYVATASPARDEKASYVAWGHSTVVDPWGQVLTKAGTEETILYSDIDLKKLSEIRQQIPILKQKRADLYSVESKKP", "length": 276 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4VBV9-1", "protein_name": "Omega-amidase NIT2", "gene_name": "nit2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSKFRLAVVQLHVSKIKADNLGRAQTLVKEAAGQGAKVVVLPECFNSPYGTGFFKEYAEKIPGESTQVLSETAKKCGIYLVGGSIPEEDGGKLYNTCSVFGPDGTLLVTHRKIHLFDIDVPGKIRFQESETLSPGKSLSMFETPYCKVGVGICYDIRFAELAQIYAKKGCQLLVYPGAFNMTTGPAHWELLQRGRAVDNQVYVATASPARDETASYVAWGHSSVINPWGEVISKAGSEESVVYADIDLQYLADVRQQIPITKQRRNDLYSVNSVQEG", "length": 277 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q54JM9-1", "protein_name": "Nitrilase homolog 2", "gene_name": "nit2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYRGLINSFKNTSKFSTSLFNNNNNCSTTTKSFTHISQQLRKVHLMADKEKVFKFAGIQLLCGDNKEENVQNAIKHIDEAAKNGAKLISLPECFNSPYSTSTFEKYSETEDGETVKKLSEAAKRNQIFLVGGSIPEIDKATGKIYNTCFIFNDKGEVVKKHRKIHLFDIDVPNKIRFKESETLTPGDSFSVVDIGYCKIGVAICYDIRFPELAMLYSKMGAKFLIYPGAFNMVTGPAHWELLQRGRAVDNQVFVAAISPARNPSSTYQAWGHSTIVNSWGTILATTDEHQSIIYSDIDLNTLNETRSSIPIYSQKRDDLYKLDSIKKQ", "length": 328 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8RUF8-1", "protein_name": "Omega-amidase, chloroplastic", "gene_name": "NLP3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKSAISSSLFFNSKNLLNPNPLSRFISLKSNFLPKLSPRSITSHTLKLPSSSTSALRSISSSMASSFNPEQARVPSALPLPAPPLTKFNIGLCQLSVTSDKKRNISHAKKAIEEAASKGAKLVLLPEIWNSPYSNDSFPVYAEEIDAGGDASPSTAMLSEVSKRLKITIIGGSIPERVGDRLYNTCCVFGSDGELKAKHRKIHLFDIDIPGKITFMESKTLTAGETPTIVDTDVGRIGIGICYDIRFQELAMIYAARGAHLLCYPGAFNMTTGPLHWELLQRARATDNQLYVATCSPARDSGAGYTAWGHSTLVGPFGEVLATTEHEEAIIIAEIDYSILEQRRTSLPLNRQRRGDLYQLVDVQRLDSK", "length": 369 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JHW2-1", "protein_name": "Omega-amidase NIT2", "gene_name": "Nit2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTKAGTEETILYSDIDLKKLAEIRQQIPILKQKRADLYTVESKKP", "length": 276 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NQR4-1", "protein_name": "Omega-amidase NIT2", "gene_name": "NIT2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSFRLALIQLQISSIKSDNVTRACSFIREAATQGAKIVSLPECFNSPYGAKYFPEYAEKIPGESTQKLSEVAKECSIYLIGGSIPEEDAGKLYNTCAVFGPDGTLLAKYRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCRVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRSRAVDNQVYVATASPARDDKASYVAWGHSTVVNPWGEVLAKAGTEEAIVYSDIDLKKLAEIRQQIPVFRQKRSDLYAVEMKKP", "length": 276 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VHE4-1", "protein_name": "omega-amidase", "gene_name": "Dmel\\CG8132", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSKTSNIMRLALLQLKGSKDKVANVQNAVTKIEAAVKEHKPRLITLPECFNAPYGTKYFREYSETIPDGYTSQQLSNLARKHQVYIVGGTIPELGENDAIYNTCTVWSPTGDLVAKHRKMHLFDIDVKGGIRFKESETLSAGNDFTIINVDGHKIGIGICYDIRFEEMARLYRNAGCEMIIYPAAFNMTTGPLHWELLQRSRANDNQLFVVTTSPARDTSAEYVAYGHSMVVNPWAKVQQSASEGEEIVVADIDFSEVEQVRQQIPVFGQRRLDLYATERKAK", "length": 283 }, "evidence": [ { "id": "F1SKY2", "url": "https://omabrowser.org/oma/group/F1SKY2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "omega-amidase activity", "id": "GO:0050152", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050152", "evidence": [ { "database": "UniProtKB", "id": "F1SKY2", "url": "https://www.uniprot.org/uniprotkb/F1SKY2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "asparagine metabolic process", "id": "GO:0006528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006528", "evidence": [ { "database": "UniProtKB", "id": "F1SKY2", "url": "https://www.uniprot.org/uniprotkb/F1SKY2" } ], "pmid": "" }, { "name": "oxaloacetate metabolic process", "id": "GO:0006107", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006107", "evidence": [ { "database": "UniProtKB", "id": "F1SKY2", "url": "https://www.uniprot.org/uniprotkb/F1SKY2" } ], "pmid": "" }, { "name": "glutamine metabolic process", "id": "GO:0006541", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006541", "evidence": [ { "database": "UniProtKB", "id": "F1SKY2", "url": "https://www.uniprot.org/uniprotkb/F1SKY2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SKY2", "url": "https://www.uniprot.org/uniprotkb/F1SKY2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "32963", "name": "", "equation": "2-oxoglutaramate + H2O = 2-oxoglutarate + NH4(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "32963", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/32963" } ] }, { "id": "59412", "name": "", "equation": "2-oxosuccinamate + H2O = oxaloacetate + NH4(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59412", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59412" } ] }, { "id": "R-SSC-6798745", "name": "Exocytosis of tertiary granule lumen proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region, tertiary granule lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798745", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798745" } ] }, { "id": "R-SSC-6798749", "name": "Exocytosis of specific granule lumen proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region, specific granule lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798749", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798749" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKY2" }, { "id": "PS50263", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50263" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CN hydrolase", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 255, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 187, "end_pos": 189 }, { "start_pos": 27, "end_pos": 29 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI67-1", "uniprot_ac": "F1SI67", "uniprot_id": "F1SI67_PIG", "mass": { "chemical_mass": 152086.0, "monoisotopic_mass": 152086.0 }, "refseq": {}, "gene_names": [ { "name": "SGO2", "type": "recommended", "evidence": [ { "id": "F1SI67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ] } ], "protein_names": [ { "name": "Shugoshin 2", "type": "synonym", "evidence": [ { "id": "F1SI67", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI67/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SGO2", "url": "https://www.uniprot.org/uniprotkb/F1SI67", "locus": { "chromosome": "15", "start_pos": 104150720, "end_pos": 104099384, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016092", "url": "https://www.ensembl.org/id/ENSSSCG00000016092" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016092", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016092", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR038889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21577", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21577", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21577:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21577:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-141430", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-141444", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141444", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2500257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2500257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68877", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68877", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9648025", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9648025", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1VD77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VD77-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI67-1", "url": "https://www.uniprot.org/uniprotkb/F1SI67-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METSSLFTSGIKKPVKEKRISKTAKLNVSLASKIKTKIINNSSIFKISLKHNNRALAQALSREKENSRRITTEKTLLQKEVEKLNFENTFLRLKLNNLNKKLIEIEALMNNNLITAIEMSTLSEFHQSPFLLPSSKKKRVSKQCKLMRLPFARVPLTSNDDDDDDDDNKEKTQCNNKTISKTSPDTPSLVSTRRLSTQHNLESLFHKEKDQNVYGLNVSEHISSVVDTLPKESHSHSEQNSRSSLKSEMKNAQSISYGKEKSSPINVTKRKKRVSSWESNNPKDSPCVTDLDQQQISSPELNWIAIKDFTNETNNKMQRNILCFPASSESASEPTAEGMNQVHGNDDFQLQKTVYDDDMDLTASEVSKIVTVSTGPKNKSDRKPNDCGMKTFRKVKDSSSEKKREKSKRQFKNSSDVNTEEKIENGTIRRSIVLDGEGDSEDPNFIFNIEKLTQSNIPKKITLHNGFAQDDRQGTQYNKKKKRIHVTGEQKEIHTFSQSSDKFQQDNKFDMGASSLACKKIKASRQTFVIDKFEKDNLFPNQDIKGTTSENLGVTNEFQTACLSNKDNGDLCDYETRDILDLKKQVTDMQPIQHNEPKINKLRQKINRKTEVISQMSQIFGDNTKDVPGPEKGDFPLQTQEDKKNICGNLGVSNEFQKSALSPSNNGNLCDCETQNMLGLQKQITSVYPVQQNEMNHLANDGNGYCPEKGNSFFLTQDKKLIPENLEDTSEFHTPALSTKDNGKLYDYDTHNVCGVKKHVHDIQPACQNESKVDKKLRQKVCRKTQIISGINQLYENDDKGMHDPGKCNLFSLMQKDKEVVPENLKDGNEFQFQIAEMSPRGNRNLCDYETQNILGVKTPATDMPPGKQNESKINKRLRQKVSHKTEIILGMNRKNEFNSKDIHDPKKGNFSSLTSKDKETISENLEFTNDFQTIYPIYLSTKDNGNLYDYKTQNMLDLKKHATDMQPAQQNEPKINKKLRQKVNQKTEIISEMYQIYEDDDKHVHGQEGCTKDLDFKINEPKQRLEGQNVIGGYCKGINSDEKENWDKISNPCKPVKKHKKESSGKTKNILTKSKKKPVLQLTGSSQMSMSLEPSLKHITNEADSDPGNQTEPQKSLKQSITTLNKKRDVSFVEVTEERQCQTEKVNKMTPKSKKRKTFIDPSPDSHELMETVPDTVQGISVGSEYTIKREKLENEEIVKPDFYTKKLKPLSQIYSPNRKDSSFSSVFESSIPLSALSSKNRRENFVLERSPVFQVSDDVHEMKEMKLKVIQRTQKSEIGIRTLQDLTNTSSVSNNTAKSENKLEELSSELPSRRRRCTPLSLKEPSLKGKMRR", "length": 1335, "header": "tr|F1SI67-1|F1SI67_PIG Isoform 1 of Shugoshin 2 OS=Sus scrofa OX=9823 GN=SGO2 PE=3 SV=3 CANONICAL=F1SI67-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VD77-1", "url": "https://www.uniprot.org/uniprotkb/F1SI67/entry#A0A4X1VD77-1", "sequence": { "sequence": "MEYPVMETSSLFTSGIKKPVKEKRISKTAKLNVSLASKIKTKIINNSSIFKISLKHNNRALAQALSREKENSRRITTEKTLLQKEVEKLNFENTFLRLKLNNLNKKLIEIEALMNNNLITAIEMSTLSEFHQSPFLLPSSKKKRVSKQCKLMRLPFARVPLTSNDDDDDDDDNKEKTQCNNKTISKTSPDTPSLVSTRRLSTQHNLESLFHKEKDQNVYGLNVSEHISSVVDTLPKGEIFFLIHFEYQY", "length": 249, "header": "tr|A0A4X1VD77-1|F1SI67_PIG Computationally mapped isoform of Shugoshin 2 OS=Sus scrofa OX=9823 GN=SGO2 PE=3 SV=1 CANONICAL=F1SI67-1" }, "locus": { "chromosome": "15", "start_pos": 104139230, "end_pos": 104116264, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086804.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086804.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062625.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062625.1" } ] } }, { "isoform_ac": "F1SI67-1", "url": "https://www.uniprot.org/uniprotkb/F1SI67/entry#F1SI67-1", "sequence": { "sequence": "METSSLFTSGIKKPVKEKRISKTAKLNVSLASKIKTKIINNSSIFKISLKHNNRALAQALSREKENSRRITTEKTLLQKEVEKLNFENTFLRLKLNNLNKKLIEIEALMNNNLITAIEMSTLSEFHQSPFLLPSSKKKRVSKQCKLMRLPFARVPLTSNDDDDDDDDNKEKTQCNNKTISKTSPDTPSLVSTRRLSTQHNLESLFHKEKDQNVYGLNVSEHISSVVDTLPKESHSHSEQNSRSSLKSEMKNAQSISYGKEKSSPINVTKRKKRVSSWESNNPKDSPCVTDLDQQQISSPELNWIAIKDFTNETNNKMQRNILCFPASSESASEPTAEGMNQVHGNDDFQLQKTVYDDDMDLTASEVSKIVTVSTGPKNKSDRKPNDCGMKTFRKVKDSSSEKKREKSKRQFKNSSDVNTEEKIENGTIRRSIVLDGEGDSEDPNFIFNIEKLTQSNIPKKITLHNGFAQDDRQGTQYNKKKKRIHVTGEQKEIHTFSQSSDKFQQDNKFDMGASSLACKKIKASRQTFVIDKFEKDNLFPNQDIKGTTSENLGVTNEFQTACLSNKDNGDLCDYETRDILDLKKQVTDMQPIQHNEPKINKLRQKINRKTEVISQMSQIFGDNTKDVPGPEKGDFPLQTQEDKKNICGNLGVSNEFQKSALSPSNNGNLCDCETQNMLGLQKQITSVYPVQQNEMNHLANDGNGYCPEKGNSFFLTQDKKLIPENLEDTSEFHTPALSTKDNGKLYDYDTHNVCGVKKHVHDIQPACQNESKVDKKLRQKVCRKTQIISGINQLYENDDKGMHDPGKCNLFSLMQKDKEVVPENLKDGNEFQFQIAEMSPRGNRNLCDYETQNILGVKTPATDMPPGKQNESKINKRLRQKVSHKTEIILGMNRKNEFNSKDIHDPKKGNFSSLTSKDKETISENLEFTNDFQTIYPIYLSTKDNGNLYDYKTQNMLDLKKHATDMQPAQQNEPKINKKLRQKVNQKTEIISEMYQIYEDDDKHVHGQEGCTKDLDFKINEPKQRLEGQNVIGGYCKGINSDEKENWDKISNPCKPVKKHKKESSGKTKNILTKSKKKPVLQLTGSSQMSMSLEPSLKHITNEADSDPGNQTEPQKSLKQSITTLNKKRDVSFVEVTEERQCQTEKVNKMTPKSKKRKTFIDPSPDSHELMETVPDTVQGISVGSEYTIKREKLENEEIVKPDFYTKKLKPLSQIYSPNRKDSSFSSVFESSIPLSALSSKNRRENFVLERSPVFQVSDDVHEMKEMKLKVIQRTQKSEIGIRTLQDLTNTSSVSNNTAKSENKLEELSSELPSRRRRCTPLSLKEPSLKGKMRR", "length": 1335, "header": "tr|F1SI67-1|F1SI67_PIG Isoform 1 of Shugoshin 2 OS=Sus scrofa OX=9823 GN=SGO2 PE=3 SV=3 CANONICAL=F1SI67-1" }, "locus": { "chromosome": "15", "start_pos": 104150392, "end_pos": 104116279, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017520.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017520.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017048.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017048.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VD77", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VD77" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-141430", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "resource": "Reactome", "description": "Inactivation of APC/C via direct inhibition of the APC/C complex" }, { "id": "R-SSC-141444", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141444", "resource": "Reactome", "description": "Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2500257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2500257", "resource": "Reactome", "description": "Resolution of Sister Chromatid Cohesion" }, { "id": "R-SSC-5663220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "resource": "Reactome", "description": "RHO GTPases Activate Formins" }, { "id": "R-SSC-68877", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68877", "resource": "Reactome", "description": "Mitotic Prometaphase" }, { "id": "R-SSC-9648025", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9648025", "resource": "Reactome", "description": "EML4 and NUDC in mitotic spindle formation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "chromosome segregation", "id": "GO:0007059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007059", "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "pmid": "" }, { "name": "homologous chromosome segregation", "id": "GO:0045143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045143", "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "pmid": "" }, { "name": "mitotic sister chromatid cohesion, centromeric", "id": "GO:0071962", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071962", "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "pmid": "" }, { "name": "meiotic sister chromatid cohesion", "id": "GO:0051177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051177", "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "chromosome, centromeric region", "id": "GO:0000775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000775", "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "pmid": "" }, { "name": "mitotic cohesin complex", "id": "GO:0030892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030892", "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "F1SI67", "url": "https://www.uniprot.org/uniprotkb/F1SI67" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1110, "end_pos": 1112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1290, "end_pos": 1292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1296, "end_pos": 1298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" }, { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 425, "end_pos": 427, "annotation": "n_glycosylation_sequon" }, { "start_pos": 769, "end_pos": 771, "annotation": "n_glycosylation_sequon" }, { "start_pos": 870, "end_pos": 872, "annotation": "n_glycosylation_sequon" }, { "start_pos": 910, "end_pos": 912, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1110, "end_pos": 1112 }, { "start_pos": 1290, "end_pos": 1292 }, { "start_pos": 1296, "end_pos": 1298 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 217, "end_pos": 219 }, { "start_pos": 266, "end_pos": 268 }, { "start_pos": 27, "end_pos": 29 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 378, "end_pos": 380 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 413, "end_pos": 415 }, { "start_pos": 41, "end_pos": 43 }, { "start_pos": 425, "end_pos": 427 }, { "start_pos": 769, "end_pos": 771 }, { "start_pos": 870, "end_pos": 872 }, { "start_pos": 910, "end_pos": 912 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLG6-1", "uniprot_ac": "F1SLG6", "uniprot_id": "F1SLG6_PIG", "mass": { "chemical_mass": 31926.0, "monoisotopic_mass": 31926.0 }, "refseq": { "ac": "XP_003125051", "name": "deoxyguanosine kinase, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125051" }, "gene_names": [ { "name": "DGUOK", "type": "recommended", "evidence": [ { "id": "F1SLG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ] }, { "name": "DGUOK", "type": "synonym", "evidence": [ { "id": "XP_003125051", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125051" } ] } ], "protein_names": [ { "name": "Deoxyguanosine kinase", "type": "synonym", "evidence": [ { "id": "F1SLG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLG6/entry#names_and_taxonomy" } ] }, { "name": "deoxyguanosine kinase, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003125051", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125051" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DGUOK", "url": "https://www.uniprot.org/uniprotkb/F1SLG6", "locus": { "chromosome": "3", "start_pos": 69054761, "end_pos": 69091341, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008293", "url": "https://www.ensembl.org/id/ENSSSCG00000008293" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008293", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008293", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01673", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01673", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515889", "url": "https://www.ncbi.nlm.nih.gov/gene/100515889", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002624", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002624", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515889", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515889", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QHEHWLV", "url": "https://omabrowser.org/oma/group/QHEHWLV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLG6", "url": "https://www.orthodb.org/?gene=F1SLG6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10513", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10513", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10513:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10513:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01712", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01712", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-74217", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-74217", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125051", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125051", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19201", "url": "https://www.rhea-db.org/rhea/19201", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "23452", "url": "https://www.rhea-db.org/rhea/23452", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1W7D4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W7D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7D4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLG6-1", "url": "https://www.uniprot.org/uniprotkb/F1SLG6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTALRLYLRLLRSSSKSMAQSPVKGGPPSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWDVATEPVATWQNVQAAGTQKACTSPNLGNLLDMMYQNPTRWSYTFQTFSFMSRLKVQLEPFPEKLLEAEKAVRIFERSVYSDRYIFAKNLFENGSLSDVEWHIYQDGHSFLLQEFASRLRLHGFVYLQAAPQVCLKRLRRRAREEERGIELAYLEQLHDQHEAWLVHKTTPLHSEALLNVPVLVLDVNDDFSEEVTRQEELMKRVNTFVKNL", "length": 277, "header": "tr|F1SLG6-1|F1SLG6_PIG Isoform 1 of Deoxyguanosine kinase OS=Sus scrofa OX=9823 GN=DGUOK PE=3 SV=2 CANONICAL=F1SLG6-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W7D4-1", "url": "https://www.uniprot.org/uniprotkb/F1SLG6/entry#A0A4X1W7D4-1", "sequence": { "sequence": "MTALRLYLRLLRSSSKSMAQSPVKGGPPSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWDVATEPVATWQNVQAAGTQKACTSPNLGNLLDMMYQNPTRWSYTFQTFSFMSRLKVQLEPFPEKLLEAEKAVRIFERSVYSDRLHSEALLNVPVLVLDVNDDFSEEVTRQEELMKRVNTFVKNL", "length": 189, "header": "tr|A0A4X1W7D4-1|F1SLG6_PIG Computationally mapped isoform of Deoxyguanosine kinase OS=Sus scrofa OX=9823 GN=DGUOK PE=3 SV=1 CANONICAL=F1SLG6-1" }, "locus": { "chromosome": "3", "start_pos": 69091253, "end_pos": 69055103, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080705.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080705.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064216.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064216.1" } ] } }, { "isoform_ac": "F1SLG6-1", "url": "https://www.uniprot.org/uniprotkb/F1SLG6/entry#F1SLG6-1", "sequence": { "sequence": "MTALRLYLRLLRSSSKSMAQSPVKGGPPSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWDVATEPVATWQNVQAAGTQKACTSPNLGNLLDMMYQNPTRWSYTFQTFSFMSRLKVQLEPFPEKLLEAEKAVRIFERSVYSDRYIFAKNLFENGSLSDVEWHIYQDGHSFLLQEFASRLRLHGFVYLQAAPQVCLKRLRRRAREEERGIELAYLEQLHDQHEAWLVHKTTPLHSEALLNVPVLVLDVNDDFSEEVTRQEELMKRVNTFVKNL", "length": 277, "header": "tr|F1SLG6-1|F1SLG6_PIG Isoform 1 of Deoxyguanosine kinase OS=Sus scrofa OX=9823 GN=DGUOK PE=3 SV=2 CANONICAL=F1SLG6-1" }, "locus": { "chromosome": "3", "start_pos": 69091253, "end_pos": 69055103, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009082.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009082.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008853.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008853.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W7D4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W7D4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515889", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515889", "resource": "KEGG Pathway" }, { "id": "R-SSC-74217", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-74217", "resource": "Reactome", "description": "Purine salvage" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MHU8-1", "protein_name": "Deoxyguanosine kinase, mitochondrial isoform X1", "gene_name": "Dguok", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAGGFLLRRLRAPFRSLALNALMDAPRARSMHDGGGPRSLSIEGNIAVGKSTFVKLLTNTHPEWQVATEPVATWQNIQAAGTQKDGTSKGPGNLLEMMYQEPARWSYTFQTLSFMSRLKVQLEPLPGKLIQAEKSVRIFERSVYSDRYIFAKNLFENGSLSDVEWHIYQDWHSFLLQEFANRLLIHGFIYLQASPQVCLERLYQRSRAEEKGIELAYLEQLHGQHEDWFINKTTKLHFEALQHVPVLVLNVSDDFSENAAKQEELMRQVNTFIRSL", "length": 277 }, "evidence": [ { "id": "F1SLG6", "url": "https://omabrowser.org/oma/group/F1SLG6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A5WUY2-1", "protein_name": "deoxyguanosine kinase", "gene_name": "dguok", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIIKTAKRLLSSSALFCSPRNLMSTNNYIKRVSIEGNIAVGKSTFARLLQNACPDWDVIAEPVSKWQNVDQTPPTASSPQPCTSNLLEMMYRDPKRWSYTFQSFSCMSRLRTQLQPLPDTLLRSRGGAVRVYERSVYSDRYIFALNMFALGCINSTEWAVYQDWHSFLIEQFGHRVQLEGIIYLRASPQMCLERLNRRARVEEQEIELDYLEKLHTRHEDWLINKTTTLHFEQLMKVPVLVLDAEVAFEQNPEVQDCLLSKVRDFLSQL", "length": 269 }, "evidence": [ { "id": "F1SLG6", "url": "https://omabrowser.org/oma/group/F1SLG6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q16854-1", "protein_name": "Deoxyguanosine kinase, mitochondrial", "gene_name": "DGUOK", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGRLFLSRLRAPFSSMAKSPLEGVSSSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGTQKACTAQSLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNTFVKNL", "length": 277 }, "evidence": [ { "id": "F1SLG6", "url": "https://omabrowser.org/oma/group/F1SLG6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QX60-1", "protein_name": "Deoxyguanosine kinase, mitochondrial", "gene_name": "Dguok", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAGRFLLRRLRASFRSPLRNALVDAPHARAMHDGGGPRRLCIEGNIAVGKSTFVKLLMKTHPEWQVATEPIAEWQNIQAAGAQKDGTSKRLGNLLEMMYQEPARWSYTFQTLSFMSRLKVQLEPIPGRLLQAEKSVRVFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLQEFANRLLLHGFIYLQASPQVCMERLYQRDREEEKGIELAYLQQLHSQHEDWFINKTTKLHFEALQHVPVLVLDVTEDFSENAARQEELMGQVNTFMRNL", "length": 277 }, "evidence": [ { "id": "F1SLG6", "url": "https://omabrowser.org/oma/group/F1SLG6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" }, { "name": "deoxynucleoside kinase activity", "id": "GO:0019136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019136", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" }, { "name": "deoxyguanosine kinase activity", "id": "GO:0004138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004138", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" }, { "name": "deoxyadenosine kinase activity", "id": "GO:0004136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004136", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "carbohydrate derivative metabolic process", "id": "GO:1901135", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901135", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" }, { "name": "purine deoxyribonucleoside metabolic process", "id": "GO:0046122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046122", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" }, { "name": "dAMP salvage", "id": "GO:0106383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106383", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SLG6", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19201", "name": "", "equation": "2'-deoxyguanosine + ATP = dGMP + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19201", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19201" } ] }, { "id": "23452", "name": "", "equation": "2'-deoxyadenosine + ATP = dAMP + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "23452", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/23452" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLG6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLG6" }, { "id": "PF01712", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01712" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Deoxynucleoside kinase", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 275, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 158, "end_pos": 160 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFE4-1", "uniprot_ac": "F1SFE4", "uniprot_id": "F1SFE4_PIG", "mass": { "chemical_mass": 20758.0, "monoisotopic_mass": 20758.0 }, "refseq": { "ac": "NP_001230305", "name": "glucosamine 6-phosphate N-acetyltransferase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230305" }, "gene_names": [ { "name": "GNPNAT1", "type": "recommended", "evidence": [ { "id": "F1SFE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" } ] }, { "name": "GNPNAT1", "type": "synonym", "evidence": [ { "id": "NP_001230305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230305" } ] } ], "protein_names": [ { "name": "Glucosamine 6-phosphate N-acetyltransferase", "type": "recommended", "evidence": [ { "id": "F1SFE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFE4/entry#names_and_taxonomy" } ] }, { "name": "2.3.1.4", "type": "synonym", "evidence": [ { "id": "F1SFE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFE4/entry#names_and_taxonomy" } ] }, { "name": "glucosamine 6-phosphate N-acetyltransferase", "type": "synonym", "evidence": [ { "id": "NP_001230305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230305" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFE4", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GNPNAT1", "url": "https://www.uniprot.org/uniprotkb/F1SFE4", "locus": { "chromosome": "1", "start_pos": 182407229, "end_pos": 182423441, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005040", "url": "https://www.ensembl.org/id/ENSSSCG00000005040" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005040", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005040", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152942", "url": "https://www.ncbi.nlm.nih.gov/gene/100152942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152942", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152942", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FRKCENQ", "url": "https://omabrowser.org/oma/group/FRKCENQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WE54", "url": "https://www.orthodb.org/?gene=A0A4X1WE54", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SFE4", "url": "https://www.orthodb.org/?gene=F1SFE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13355", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13355", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13355:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13355:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00583", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00583", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-446210", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446210", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230305", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230305", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "10292", "url": "https://www.rhea-db.org/rhea/10292", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1WE54", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WE54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WE54-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WE54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFE4", "url": "https://www.uniprot.org/uniprotkb/F1SFE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFE4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPDETPLFDPSLLKEVDWSQNTATFSPAISPTHPGEGLVLRPLCTADLNRGFFKVLGQLTETGVVNPEQFMKSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLSTLTLLSKKLNCYKITLECLPQNVGFYKKFGYTVSEENYMCRRFLK", "length": 184, "header": "tr|F1SFE4-1|F1SFE4_PIG Isoform 1 of Glucosamine 6-phosphate N-acetyltransferase OS=Sus scrofa OX=9823 GN=GNPNAT1 PE=1 SV=1 CANONICAL=F1SFE4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WE54-1", "url": "https://www.uniprot.org/uniprotkb/F1SFE4/entry#A0A4X1WE54-1", "sequence": { "sequence": "MKPDETPLFDPSLLKEVDWSQNTATFSPAISPTHPGEGLVLRPLCTADLNRESFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLSTLTLLSKKLNCYKITLECLPQNVGFYKKFGYTVSEENYMCRRFLK", "length": 163, "header": "tr|A0A4X1WE54-1|F1SFE4_PIG Computationally mapped isoform of Glucosamine 6-phosphate N-acetyltransferase OS=Sus scrofa OX=9823 GN=GNPNAT1 PE=1 SV=1 CANONICAL=F1SFE4-1" }, "locus": { "chromosome": "1", "start_pos": 182417561, "end_pos": 182411190, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064519.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064519.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053986.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053986.1" } ] } }, { "isoform_ac": "F1SFE4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFE4/entry#F1SFE4-1", "sequence": { "sequence": "MKPDETPLFDPSLLKEVDWSQNTATFSPAISPTHPGEGLVLRPLCTADLNRGFFKVLGQLTETGVVNPEQFMKSFEHMKKSGDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLSTLTLLSKKLNCYKITLECLPQNVGFYKKFGYTVSEENYMCRRFLK", "length": 184, "header": "tr|F1SFE4-1|F1SFE4_PIG Isoform 1 of Glucosamine 6-phosphate N-acetyltransferase OS=Sus scrofa OX=9823 GN=GNPNAT1 PE=1 SV=1 CANONICAL=F1SFE4-1" }, "locus": { "chromosome": "1", "start_pos": 182417561, "end_pos": 182411190, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051449.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051449.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037738.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037738.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1WE54", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WE54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152942", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152942", "resource": "KEGG Pathway" }, { "id": "R-SSC-446210", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446210", "resource": "Reactome", "description": "Synthesis of UDP-N-acetyl-glucosamine" } ], "orthologs": [ { "uniprot_canonical_ac": "G3I6H6-1", "protein_name": "Glucosamine 6-phosphate N-acetyltransferase", "gene_name": "Gnpnat1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKPDETPMFDPSLLQEVDWSQNTATFSPAISPMNPGEGLVLRPLCTADLNKGFFKVLGQLTETGVVSPEQFMKTFERMKKSGDYYVTVVEDVTLGEIVATATLIIEHKFIHSCAKRGRVEDVVVSDDCRGKQLGKLLLSTLTLLSKKLNCYKITLECLPQNVGFYQKFGYTVSEENYMCRRFLK", "length": 184 }, "evidence": [ { "id": "F1SFE4", "url": "https://omabrowser.org/oma/group/F1SFE4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "UDP-N-acetylglucosamine biosynthetic process", "id": "GO:0006048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006048", "evidence": [ { "database": "UniProtKB", "id": "F1SFE4", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "glucosamine 6-phosphate N-acetyltransferase activity", "id": "GO:0004343", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004343", "evidence": [ { "database": "UniProtKB", "id": "F1SFE4", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SFE4", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SFE4", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" } ], "pmid": "" }, { "name": "late endosome", "id": "GO:0005770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005770", "evidence": [ { "database": "UniProtKB", "id": "F1SFE4", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "F1SFE4", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "F1SFE4", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10292", "name": "", "equation": "D-glucosamine 6-phosphate + acetyl-CoA = N-acetyl-D-glucosamine 6-phosphate + CoA + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10292", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10292" } ] }, { "id": "R-SSC-449734", "name": "Acetylation of glucosamine 6-phosphate to GlcNAc6P", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-449734", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-449734" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFE4" }, { "id": "PS51186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-acetyltransferase", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 184, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ38-1", "uniprot_ac": "F1SQ38", "uniprot_id": "F1SQ38_PIG", "mass": { "chemical_mass": 122488.0, "monoisotopic_mass": 122488.0 }, "refseq": {}, "gene_names": [ { "name": "SEMA5B", "type": "recommended", "evidence": [ { "id": "F1SQ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ] } ], "protein_names": [ { "name": "Semaphorin 5B", "type": "synonym", "evidence": [ { "id": "F1SQ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ38/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEMA5B", "url": "https://www.uniprot.org/uniprotkb/F1SQ38", "locus": { "chromosome": "13", "start_pos": 137590831, "end_pos": 137455346, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011872", "url": "https://www.ensembl.org/id/ENSSSCG00000011872" } ] } } ], "crossref": [ { "id": "F1SQ38", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ38", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011872", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011872", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057563", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057563", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11036:SF39", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11036:SF39", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01403", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01403", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01437", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01437", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23260", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23260", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5173214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q6Q5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Q5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Q5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ38-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ38-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVFLGPLAVTLLPPSLTLLVVHLAGSQDVALEPSSEQQLCSLREHPIVAFADLKPWVSNFTYPGARDFSQLALDPSRNQLIVGARNYLFRLSLANVSLLQATEWASNEDTRRSCQSKGKTEQREKTRSATAGELAPLSLSFLLQEECQNYVRVLIVTGRKVFMCGTNAFSPVCSSRQVGNLSRTVEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAFDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAAWLPIANPIPNFQCGTLPEVGPNENLTERSLQDAQRLFLMSEAVQPVTPEPCVTQDSVRFSHLVVDLVQAKDTLYHVLYIGTESGTILKALSTTSRSLRGCYLEELHVLPPGRREPLRSLRILHSARALFVGLSDGVLRVPLERCAAYRSQGACLEARDPYCGWDGKQQRCSTLEDSSNMSLWTQNITECPVRNVTRDGSFGPWSPWQPCEHLDGDTSGSCLCRARACDSPRPRCGGRDCLGPAIHIANCSRNGAWTPWSSWALCSTSCGIGFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSNCGGGVQSRSRACENGNSCPGCGMEFKTCNPEGCPEVRRNTPWTPWLPVNVTQGGARQEQRFRFTCRAPLPDPHGLQFGRRRVETRTCPADGSGACDTDALVEDLLRSGGTSSHTVSGGWAAWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWSCWTSWSPCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEALCATQACPEGWSPWSEWSACTEDGVQSRSRHCEELVPGPSTCAGNSSQSRPCPYSEIPVILPASSVDEATGCGGFSLIHLVATGISCFLGSGLLTLAVYLSCQHCQHQSQESTLVHPATPNHLHYKGGGTPKNEKYTPMEFKTLNKNNLIPDDRANFYPLQQTNVYTTTYYPSPLNKHSFRPEASPGQRCFPNS", "length": 1116, "header": "tr|F1SQ38-1|F1SQ38_PIG Isoform 1 of Semaphorin 5B OS=Sus scrofa OX=9823 GN=SEMA5B PE=4 SV=3 CANONICAL=F1SQ38-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q6Q5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ38/entry#A0A5G2Q6Q5-1", "sequence": { "sequence": "MVFLGPLAVTLLPPSLTLLVVHLAGSQDVALEPSSEQQLCSLREHPIVAFADLKPWVSNFTYPGARDFSQLALDPSRNQLIVGARNYLFRLSLANVSLLQATEWASNEDTRRSCQSKGKTEEECQNYVRVLIVTGRKVFMCGTNAFSPVCSSRQVGNLSRTVEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAFDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAAWLPIANPIPNFQCGTLPEVGPNENLTERSLQDAQRLFLMSEAVQPVTPEPCVTQDSVRFSHLVVDLVQAKDTLYHVLYIGTESGTILKALSTTSRSLRGCYLEELHVLPPGRREPLRSLRILHSARALFVGLSDGVLRVPLERCAAYRSQGACLEARDPYCGWDGKQQRCSTLEDSSNMSLWTQNITECPVRNVTRDGSFGPWSPWQPCEHLDGDTSGSCLCRARACDSPRPRCGGRDCLGPAIHIANCSRNGAWTPWSSWALCSTSCGIGFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSNCGGGVQSRSRACENGNSCPGCGMEFKTCNPEGCPEVRRNTPWTPWLPVNVTQGGARQEQRFRFTCRAPLPDPHGLQFGRRRVETRTCPADGSGACDTDALVEDLLRSGGTSSHTVSGGWAAWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWSCWTSWSPCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEALCATQACPEGWSPWSEWSACTEDGVQSRSRHCEELVPGPSTCAGNSSQSRPCPYSEIPVILPASSVDEATGCGGFSLIHLVATGISCFLGSGLLTLAVYLSCQHCQHQSQESTLVHPATPNHLHYKGGGTPKNEKYTPMEFKTLNKNNLIPDDRANFYPLQQTNVYTTTYYPSPLNKHSFRPEASPGQRMFL", "length": 1091, "header": "tr|A0A5G2Q6Q5-1|F1SQ38_PIG Computationally mapped isoform of Semaphorin 5B OS=Sus scrofa OX=9823 GN=SEMA5B PE=4 SV=2 CANONICAL=F1SQ38-1" }, "locus": { "chromosome": "13", "start_pos": 137588935, "end_pos": 137541832, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079349.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079349.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059693.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059693.2" } ] } }, { "isoform_ac": "F1SQ38-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ38/entry#F1SQ38-1", "sequence": { "sequence": "MVFLGPLAVTLLPPSLTLLVVHLAGSQDVALEPSSEQQLCSLREHPIVAFADLKPWVSNFTYPGARDFSQLALDPSRNQLIVGARNYLFRLSLANVSLLQATEWASNEDTRRSCQSKGKTEQREKTRSATAGELAPLSLSFLLQEECQNYVRVLIVTGRKVFMCGTNAFSPVCSSRQVGNLSRTVEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAFDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAAWLPIANPIPNFQCGTLPEVGPNENLTERSLQDAQRLFLMSEAVQPVTPEPCVTQDSVRFSHLVVDLVQAKDTLYHVLYIGTESGTILKALSTTSRSLRGCYLEELHVLPPGRREPLRSLRILHSARALFVGLSDGVLRVPLERCAAYRSQGACLEARDPYCGWDGKQQRCSTLEDSSNMSLWTQNITECPVRNVTRDGSFGPWSPWQPCEHLDGDTSGSCLCRARACDSPRPRCGGRDCLGPAIHIANCSRNGAWTPWSSWALCSTSCGIGFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSNCGGGVQSRSRACENGNSCPGCGMEFKTCNPEGCPEVRRNTPWTPWLPVNVTQGGARQEQRFRFTCRAPLPDPHGLQFGRRRVETRTCPADGSGACDTDALVEDLLRSGGTSSHTVSGGWAAWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWSCWTSWSPCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEALCATQACPEGWSPWSEWSACTEDGVQSRSRHCEELVPGPSTCAGNSSQSRPCPYSEIPVILPASSVDEATGCGGFSLIHLVATGISCFLGSGLLTLAVYLSCQHCQHQSQESTLVHPATPNHLHYKGGGTPKNEKYTPMEFKTLNKNNLIPDDRANFYPLQQTNVYTTTYYPSPLNKHSFRPEASPGQRCFPNS", "length": 1116, "header": "tr|F1SQ38-1|F1SQ38_PIG Isoform 1 of Semaphorin 5B OS=Sus scrofa OX=9823 GN=SEMA5B PE=4 SV=3 CANONICAL=F1SQ38-1" }, "locus": { "chromosome": "13", "start_pos": 137586043, "end_pos": 137541832, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012986.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012986.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012644.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012644.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6Q5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Q5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5173214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "resource": "Reactome", "description": "O-glycosylation of TSR domain-containing proteins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" }, { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" }, { "name": "semaphorin-plexin signaling pathway", "id": "GO:0071526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071526", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" }, { "name": "neural crest cell migration", "id": "GO:0001755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001755", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" }, { "name": "axon extension", "id": "GO:0048675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048675", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "semaphorin receptor binding", "id": "GO:0030215", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030215", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" }, { "name": "chemorepellent activity", "id": "GO:0045499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045499", "evidence": [ { "database": "UniProtKB", "id": "F1SQ38", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 310, "end_pos": 312, "annotation": "n_glycosylation_sequon" }, { "start_pos": 356, "end_pos": 358, "annotation": "n_glycosylation_sequon" }, { "start_pos": 401, "end_pos": 403, "annotation": "n_glycosylation_sequon" }, { "start_pos": 555, "end_pos": 557, "annotation": "n_glycosylation_sequon" }, { "start_pos": 562, "end_pos": 564, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 625, "end_pos": 627, "annotation": "n_glycosylation_sequon" }, { "start_pos": 751, "end_pos": 753, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" }, { "start_pos": 967, "end_pos": 969, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ38-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1116, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ38-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ38" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ38", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ38" }, { "id": "PS51004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sema", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 518, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 180, "end_pos": 182 }, { "start_pos": 201, "end_pos": 203 }, { "start_pos": 310, "end_pos": 312 }, { "start_pos": 356, "end_pos": 358 }, { "start_pos": 401, "end_pos": 403 }, { "start_pos": 555, "end_pos": 557 }, { "start_pos": 562, "end_pos": 564 }, { "start_pos": 570, "end_pos": 572 }, { "start_pos": 59, "end_pos": 61 }, { "start_pos": 625, "end_pos": 627 }, { "start_pos": 751, "end_pos": 753 }, { "start_pos": 95, "end_pos": 97 }, { "start_pos": 967, "end_pos": 969 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIV9-1", "uniprot_ac": "F1SIV9", "uniprot_id": "F1SIV9_PIG", "mass": { "chemical_mass": 64290.0, "monoisotopic_mass": 64290.0 }, "refseq": { "ac": "XP_020924559", "name": "5'-nucleotidase domain-containing protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924559" }, "gene_names": [ { "name": "NT5DC2", "type": "recommended", "evidence": [ { "id": "F1SIV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV9" } ] }, { "name": "NT5DC2", "type": "synonym", "evidence": [ { "id": "XP_020924559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924559" } ] } ], "protein_names": [ { "name": "5'-nucleotidase domain containing 2", "type": "synonym", "evidence": [ { "id": "F1SIV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV9/entry#names_and_taxonomy" } ] }, { "name": "5'-nucleotidase domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "XP_020924559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924559" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIV9", "url": "https://www.uniprot.org/uniprotkb/F1SIV9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NT5DC2", "url": "https://www.uniprot.org/uniprotkb/F1SIV9", "locus": { "chromosome": "13", "start_pos": 34659249, "end_pos": 34679535, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011444", "url": "https://www.ensembl.org/id/ENSSSCG00000011444" } ] } } ], "crossref": [ { "id": "F1SIV9", "url": "https://alphafold.ebi.ac.uk/entry/F1SIV9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011444", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011444", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07522", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07522", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154818", "url": "https://www.ncbi.nlm.nih.gov/gene/100154818", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016695", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016695", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154818", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154818", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QWTHQPQ", "url": "https://omabrowser.org/oma/group/QWTHQPQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIV9", "url": "https://www.orthodb.org/?gene=F1SIV9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12103:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12103:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05761", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05761", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020924559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924559", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QFN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QFN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIV9", "url": "https://www.uniprot.org/uniprotkb/F1SIV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIV9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAGLRAAARRYLPRRDHGGPRAASSSPSCPGCGPPGPGVHCPGVPRSTPSPAPAGAAEPSAHLWARYQDMRRLVHDLLPPEVCSLLNPAAIYANNEISLQDVEVYGFDYDYTLAQYADTLHPEIFNAARDILIEHYKYPEGIRKYDYNPSFAIRGLHYDIQKSLLMKIDAFHYVQLGTAYRGLQPVPDEEVIDLYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDHFLGHGLEFDQAHLYKDVTDAIRDVHVKGLMYQWIEQDMEKYILRGEETFAVLNRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPSFFTDRRKPFRKLDEKGSLHWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLAAWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR", "length": 557, "header": "tr|F1SIV9-1|F1SIV9_PIG Isoform 1 of 5'-nucleotidase domain containing 2 OS=Sus scrofa OX=9823 GN=NT5DC2 PE=3 SV=3 CANONICAL=F1SIV9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QFN4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV9/entry#A0A5G2QFN4-1", "sequence": { "sequence": "MAGAGLRAAARRYLPRRDHGGPRAASSSPSCPGCGPPGPGVHCPGVPRSTPSPAPAGAAEPSAHLWARYQDMRRLVHDLLPPEVCSLLNPAAIYANNEISLQDVEVYGFDYDYTLAQYADTLHPEIFNAARDILIEHYKSLLMKIDAFHYVQLGTAYRGLQPVPDEEVIDLYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDHFLGHGLEFDQAHLYKDVTDAIRDVHVKGLMYQWIEQDMEKYILRGEETFAVLNRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPSFFTDRRKPFRKLDEKGSLHWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLAAWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR", "length": 532, "header": "tr|A0A5G2QFN4-1|F1SIV9_PIG Computationally mapped isoform of 5'-nucleotidase domain containing 2 OS=Sus scrofa OX=9823 GN=NT5DC2 PE=3 SV=1 CANONICAL=F1SIV9-1" }, "locus": { "chromosome": "13", "start_pos": 34679429, "end_pos": 34659330, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066916.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066916.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063542.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063542.1" } ] } }, { "isoform_ac": "F1SIV9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIV9/entry#F1SIV9-1", "sequence": { "sequence": "MAGAGLRAAARRYLPRRDHGGPRAASSSPSCPGCGPPGPGVHCPGVPRSTPSPAPAGAAEPSAHLWARYQDMRRLVHDLLPPEVCSLLNPAAIYANNEISLQDVEVYGFDYDYTLAQYADTLHPEIFNAARDILIEHYKYPEGIRKYDYNPSFAIRGLHYDIQKSLLMKIDAFHYVQLGTAYRGLQPVPDEEVIDLYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDHFLGHGLEFDQAHLYKDVTDAIRDVHVKGLMYQWIEQDMEKYILRGEETFAVLNRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPSFFTDRRKPFRKLDEKGSLHWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLAAWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR", "length": 557, "header": "tr|F1SIV9-1|F1SIV9_PIG Isoform 1 of 5'-nucleotidase domain containing 2 OS=Sus scrofa OX=9823 GN=NT5DC2 PE=3 SV=3 CANONICAL=F1SIV9-1" }, "locus": { "chromosome": "13", "start_pos": 34679429, "end_pos": 34659330, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012524.3", "url": "https://www.ensembl.org/id/ENSSSCT00000012524.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012196.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012196.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QFN4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFN4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154818", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154818", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A2I3BR81-1", "protein_name": "5'-nucleotidase domain containing 2", "gene_name": "Nt5dc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGAGLRATARRLLLCRGHSGPRAASSSPSCPGCGPPGPGAHCPSTPRSAPADGADLSAHLWARYQDMRRLVHDLLPPEVCSLLNPAAIYANNEISLSDVEVYGFDYDYTLAQYADALHPEIFNAARDILIEHYKYPEGIRKYDYDPSFAIRGLHYDIQKSLLMKIDAFHYVQLGTAYRGLKPVPDDEVIDLYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDYFLGHGLEFDQVHLYKDVTDAIRDVHVKGLMYQWIEQDMEKYILRGDETFAVLSRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPNFFTDRRKPFRKLDEKGSLHWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLATWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR", "length": 553 }, "evidence": [ { "id": "F1SIV9", "url": "https://omabrowser.org/oma/group/F1SIV9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8V1ABT7-1", "protein_name": "5'-nucleotidase domain containing 2", "gene_name": "NT5DC2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWGGTSPSLSVDVMRDPAVGRVLLLFSCKGQLSWSGKQKWTGLLLALLLALLLALLWLSQAEALFWSDKPQQLTYSHSCLSAERRLLVAISTTRSQSVASWRGVFGVCFVLDLLPPGVCNLLNPAAIYANNEISLGDVEIYGFDYDYTLAQYSNLLHSMIFNTARDILIEQFKYPEGLGKYDYIPGFAIRGLHYDVQKSLLMKIDAFHYVQLGTAYRGLKPVPDEEVIELYGGTQHIPLYQMSDFYGKGPSLKQFMDIFSLPEMTLLSSVIDYFITHGIEFDQVHLYKDISDAIRDVHVKGVMYKWIEKDMEQYILHGDEIYAVLNRLVNHKKKLFLITNSPFSFVDKGMKHMVGKNWRDLFDMVIVQADKPNFFTDRRKPFRKLDDNGSLQWDKINQLEKGKIYKEGNLFDFLRLTGWRGSKVLYFGDHLYSDLADLMLRHGWRTGAIVPELETEIRIINTEQYMHSLTWQQALTGLLERMQMYQDAESKQVLLEWMKERQEIRSLTKNLFNPQFGSIFRTFHNPTYFSRRLVRFSDIYMASISCLLNYDVNFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLEEMVHIR", "length": 591 }, "evidence": [ { "id": "F1SIV9", "url": "https://omabrowser.org/oma/group/F1SIV9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BNI8-1", "protein_name": "5'-nucleotidase domain containing 2", "gene_name": "NT5DC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGAGLRAAARRWVPRRDHGGPRAASSSPSCPGCGPPGPGAHCPGAPRSAPAPAPAGGAAEPSAHLWARYQDMRRLVHDLLPPEVCSLLNPAAIYANNEISLRDVEVYGFDYDYTLAQYSDTLHPEIFNAARDILVEHYKYPEGIRKYEYNPSFAIRGLHYDIQKSLLMKIDAFHYVQLGTAYRGLQPVPDEEVIELYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDHFLGHGLEFDQAHLYKDVTDAIRDVHVKGLMYQWIERDMEKYILRGDETFAVLSRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPSFFTDRRKPFRKLDEKGSLHWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLAAWMKERQELSLGASSAPSTTPPTSRGGWCASPTSTWPPSAACSTTAWTSPSTRAAPPCSTRRRSGWTSSAPAA", "length": 535 }, "evidence": [ { "id": "F1SIV9", "url": "https://omabrowser.org/oma/group/F1SIV9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6Q0N3-1", "protein_name": "5'-nucleotidase domain-containing protein 2", "gene_name": "Nt5dc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGAGLRAAARRWLLCGGQGGPRAASSSPSCPGCGPPGPGAHCPSTPRSAPADGADLSAHLWARYQDMRRLVHDLLPPEVCSLLNPAAIYANNEISLSDVEVYGFDYDYTLAQYADALHPEIFSAARDILIEHYKYPEGIRKYDYDPSFAIRGLHYDIQKSLLMKIDAFHYVQLGTAYRGLQPVPDDEVVDLYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDYFLGHGLEFDQVHLYKDVTDAIRDVHVKGLMYQWIEQDMEKYILRGDETFAVLSRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPNFFTDRRKPFRKLDEKGSLHWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLATWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYSVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR", "length": 553 }, "evidence": [ { "id": "F1SIV9", "url": "https://omabrowser.org/oma/group/F1SIV9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9H857-1", "protein_name": "5'-nucleotidase domain-containing protein 2", "gene_name": "NT5DC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRVESGSAQERGILLESLSTLLEKTTASHEGRAPGNRELTDLLPPEVCSLLNPAAIYANNEISLRDVEVYGFDYDYTLAQYADALHPEIFSTARDILIEHYKYPEGIRKYDYNPSFAIRGLHYDIQKSLLMKIDAFHYVQLGTAYRGLQPVPDEEVIELYGGTQHIPLYQMSGFYGKGPSIKQFMDIFSLPEMALLSCVVDYFLGHSLEFDQAHLYKDVTDAIRDVHVKGLMYQWIEQDMEKYILRGDETFAVLSRLVAHGKQLFLITNSPFSFVDKGMRHMVGPDWRQLFDVVIVQADKPSFFTDRRKPFRKLDEKGSLQWDRITRLEKGKIYRQGNLFDFLRLTEWRGPRVLYFGDHLYSDLADLMLRHGWRTGAIIPELEREIRIINTEQYMHSLTWQQALTGLLERMQTYQDAESRQVLAAWMKERQELRCITKALFNAQFGSIFRTFHNPTYFSRRLVRFSDLYMASLSCLLNYRVDFTFYPRRTPLQHEAPLWMDQLCTGCMKTPFLGDMAHIR", "length": 520 }, "evidence": [ { "id": "F1SIV9", "url": "https://omabrowser.org/oma/group/F1SIV9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SIV9", "url": "https://www.uniprot.org/uniprotkb/F1SIV9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SIV9", "url": "https://www.uniprot.org/uniprotkb/F1SIV9" } ], "pmid": "" }, { "name": "5'-nucleotidase activity", "id": "GO:0008253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008253", "evidence": [ { "database": "UniProtKB", "id": "F1SIV9", "url": "https://www.uniprot.org/uniprotkb/F1SIV9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIV9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 557, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIV9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIV9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A5G2QFN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFN4#function" }, { "id": "A0A5G2QFN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFN4" }, { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" }, { "id": "F1SIV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV9#function" }, { "id": "F1SIV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV9" } ], "binding_site_uniprot": 110, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 110, "end_pos": 110, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QFN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFN4#function" }, { "id": "A0A5G2QFN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QFN4" }, { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 370, "amino_acid": "Ile", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 370, "end_pos": 370, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV9#function" }, { "id": "F1SIV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIV9" }, { "id": "PIRSR017434-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR017434-2" } ], "binding_site_uniprot": 395, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 395, "end_pos": 395, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKU1-1", "uniprot_ac": "F1SKU1", "uniprot_id": "F1SKU1_PIG", "mass": { "chemical_mass": 53780.0, "monoisotopic_mass": 53780.0 }, "refseq": {}, "gene_names": [ { "name": "CWC27", "type": "recommended", "evidence": [ { "id": "F1SKU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKU1" } ] } ], "protein_names": [ { "name": "Spliceosome-associated protein CWC27 homolog", "type": "recommended", "evidence": [ { "id": "F1SKU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKU1/entry#names_and_taxonomy" } ] }, { "name": "Probable inactive peptidyl-prolyl cis-trans isomerase CWC27 homolog", "type": "synonym", "evidence": [ { "id": "F1SKU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKU1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "As part of the spliceosome, plays a role in pre-mRNA splicing. Probable inactive PPIase with no peptidyl-prolyl cis-trans isomerase activity. As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPI0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI0#function" }, { "database": "UniProtKB", "id": "ARBA00045218", "url": "https://www.uniprot.org/uniprotkb/ARBA00045218#function" }, { "database": "UniProtKB", "id": "F1SKU1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKU1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CWC27", "url": "https://www.uniprot.org/uniprotkb/F1SKU1", "locus": { "chromosome": "16", "start_pos": 43593470, "end_pos": 43345838, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016942", "url": "https://www.ensembl.org/id/ENSSSCG00000016942" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016942", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016942", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01925", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01925", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22288", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22288", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45625", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45625", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45625:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45625:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00160", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00160", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QPI0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKU1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNIYIQEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERPRNPHKIKSCEVLFNPFDDIIPREIKKPRKEKPEEEVKKLKPKGTKNFSLLSFGEEAEEEEEEVNRVSQSMKGKSKSSHDLLKDDPHLSSVPAVESEKGDAAGDSNDDGEYESAEYDGHVDGDEKSLMRERIAKKLKKDTSANVKTSEEGEVEKKSVSRSEELRKEARQLKRELLAAKQKKLENAAKQAEKNEEEMAAPDGAIAEYRREKQKYEALRKQQAKKGTSREDQTLALLNQFKSKLTQAIAETPENDISETEVEDDEGWMSHVLQFEDKSRKVKDASMQDSDTFEIYDPRNPVNKRRREESKKLMREKKERR", "length": 472, "header": "tr|F1SKU1-1|F1SKU1_PIG Isoform 1 of Spliceosome-associated protein CWC27 homolog OS=Sus scrofa OX=9823 GN=CWC27 PE=3 SV=3 CANONICAL=F1SKU1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPI0-1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1/entry#A0A5G2QPI0-1", "sequence": { "sequence": "MSNIYIQEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERPRNPHKIKSCEVLFNPFDDIIPREIKKPRKEKPEEEVKKLKPKGTKNFSLLSFGEEAEEEEEEVNRVSQSMKGKSKSSHDLLKDDPHLSSVPAVESEKGDAAGDSNDDGEYESAEYDGHVDGDEKSLMRERIAKKLKKDTSANVKTSEEGEVEKKSVSRSEELRKEARQLKRELLAAKQKKLENAAKQAEKNEEEMAAPDGAIAEYRREKQKYEALRKQQAKKGTSREDQTLALLNQFKSKLTQAIAETPENDISETEVEDDEGWMLYLKGHHPVQDHAGFLLCCLPGNLLHFTLDI", "length": 451, "header": "tr|A0A5G2QPI0-1|F1SKU1_PIG Computationally mapped isoform of Spliceosome-associated protein CWC27 homolog OS=Sus scrofa OX=9823 GN=CWC27 PE=3 SV=1 CANONICAL=F1SKU1-1" }, "locus": { "chromosome": "16", "start_pos": 43555013, "end_pos": 43346699, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091570.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091570.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066808.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066808.1" } ] } }, { "isoform_ac": "F1SKU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1/entry#F1SKU1-1", "sequence": { "sequence": "MSNIYIQEPPTNGKVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERPRNPHKIKSCEVLFNPFDDIIPREIKKPRKEKPEEEVKKLKPKGTKNFSLLSFGEEAEEEEEEVNRVSQSMKGKSKSSHDLLKDDPHLSSVPAVESEKGDAAGDSNDDGEYESAEYDGHVDGDEKSLMRERIAKKLKKDTSANVKTSEEGEVEKKSVSRSEELRKEARQLKRELLAAKQKKLENAAKQAEKNEEEMAAPDGAIAEYRREKQKYEALRKQQAKKGTSREDQTLALLNQFKSKLTQAIAETPENDISETEVEDDEGWMSHVLQFEDKSRKVKDASMQDSDTFEIYDPRNPVNKRRREESKKLMREKKERR", "length": 472, "header": "tr|F1SKU1-1|F1SKU1_PIG Isoform 1 of Spliceosome-associated protein CWC27 homolog OS=Sus scrofa OX=9823 GN=CWC27 PE=3 SV=3 CANONICAL=F1SKU1-1" }, "locus": { "chromosome": "16", "start_pos": 43593212, "end_pos": 43346699, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018450.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018450.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017950.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017950.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPI0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SKU1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SKU1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F1SKU1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1" } ], "pmid": "" }, { "name": "U2-type precatalytic spliceosome", "id": "GO:0071005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071005", "evidence": [ { "database": "UniProtKB", "id": "F1SKU1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F1SKU1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptidyl-prolyl cis-trans isomerase activity", "id": "GO:0003755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003755", "evidence": [ { "database": "UniProtKB", "id": "F1SKU1", "url": "https://www.uniprot.org/uniprotkb/F1SKU1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKU1" }, { "id": "PS50072", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50072" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PPIase cyclophilin-type", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 166, "start_aa": "Thr", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 201, "end_pos": 203 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNN6-1", "uniprot_ac": "F1SNN6", "uniprot_id": "F1SNN6_PIG", "mass": { "chemical_mass": 137870.0, "monoisotopic_mass": 137870.0 }, "refseq": {}, "gene_names": [ { "name": "SALL3", "type": "recommended", "evidence": [ { "id": "F1SNN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ] } ], "protein_names": [ { "name": "Sal-like protein 3", "type": "recommended", "evidence": [ { "id": "F1SNN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNN6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Probable transcription factor.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZKN0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKN0#function" }, { "database": "UniProtKB", "id": "ARBA00037260", "url": "https://www.uniprot.org/uniprotkb/ARBA00037260#function" }, { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SALL3", "url": "https://www.uniprot.org/uniprotkb/F1SNN6", "locus": { "chromosome": "1", "start_pos": 146252155, "end_pos": 146273906, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004858", "url": "https://www.ensembl.org/id/ENSSSCG00000004858" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004858", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004858", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20908", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20908", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23233", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23233", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23233:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23233:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZKN0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZKN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNN6-1", "url": "https://www.uniprot.org/uniprotkb/F1SNN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRRKQAKPQHLKSDEELPPPDGAPEHAVPGEGADDGDSGNESRSGSEETNVCEKCCAEFFKWTDFLEHKKACTKNPLVLIVNEDEPAPPSEEFPEPSPASSPSEQTESEAAEEAAPPEGGEGGEGRAPEKEDEPMEVGPSPDKSFQSPGPAHTGKPPLPQIPEPAPVAAYSMPNTNVTLETLLSTKVAVAQFSQNTRAAGTVGSSGGVTAVAIPMILEQLMALQQQQIHQLQLIEQIRSQVAMMNRQPLRPPLNPGAAAGSQTAPVPASGQLPGLATPSALQLSAGAAPVPTASGPAAQSASYEGPQHLSQPASGASTPHVPGGGSSVPELGAPASSGAAPASTAPASVASALSSAPQPQNASTPPALGPGPLLSSAPSLPSPLLPQTSASSVIFPNPLVSIAATHRKGKPPNVSVFEPKASAEDPFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYPVPEYLDNVPTCSGIPYGMSLPPEKPVTTWLDSKPVLPTVPTSVGLQLPPTLPSVSSYADSPGLTPASRSPQRPSPASSECPSLSPGLNSSESGIPGAAESPQPGLGGTSLTKSEPSSLPCTNARAGDVPTSGQVSAAGTPALTDSSVATGLCSPVLPAGPEPFKAKFPFGGLLDSMQTSETSKLQQLVENIDKKMTDPNQCVICHRVLSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTHFGVHRAKPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTPLPEGFQDAMDAELPYDEKAVEALSGYDDDMDDNSLEEDAAGDPSKPLLSLSSSCPPSPPSVISSIAALENQMKMIDSVMSCPQLTALKSMENGSGESDRLSNDSSSAVGDLESRSAGSPAPSESSSSMQALSPVNSNSESLHSKSPGLSAQEEPQETPLKTERPDSPPPAPENGGALDLTATHPGRPAIKEEAPFSLLFLSRERGKCESTVCRVCAKPFACRSALEIHHRSHTKERPFVCAVCRRGCSTLGNLKQHLLTHRLRELPSQLLAPNFALGPSQSTPSLLTGPAPTLVKMEVNGHSKAIPLAEGPPPAAVQVPTGPPTVLSPGLAPMLAPPPRRTPKQHNCQSCGKTFSSASALQIHERTHTGEKPFGCSICGRAFTTKGNLKVHMGTHMWNNAPARRGRRLSVENPMALLGGDALKFSEMFQKDLAARAMNVDPSFWNQYAAAITNGLAMKNNEISVIQNGGLPQLPVSLGGSAIPPMGSLAAGLDKARPGGSPPVVGLDKASAEPGAGRPFTRFVEDNKEVGIN", "length": 1316, "header": "tr|F1SNN6-1|F1SNN6_PIG Isoform 1 of Sal-like protein 3 OS=Sus scrofa OX=9823 GN=SALL3 PE=3 SV=4 CANONICAL=F1SNN6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZKN0-1", "url": "https://www.uniprot.org/uniprotkb/F1SNN6/entry#A0A286ZKN0-1", "sequence": { "sequence": "MSRRKQAKPQHLKSDEELPPPDGAPEHAVPGEGADDGDSGNESRSGSEETNVCEKCCAEFFKWTDFLEHKKACTKNPLVLIVNEDDSAPSLPSPLLPQTSASSVIFPNPLVSIAATHRKGKPPNVSVFEPKASAEDPFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYPVPEYLDNVPTCSGIPYGMSLPPEKPVTTWLDSKPVLPTVPTSVGLQLPPTLPSVSSYADSPGLTPASRSPQRPSPASSECPSLSPGLNSSESGIPGAAESPQPGLGGTSLTKSEPSSLPCTNARAGDVPTSGQVSAAGTPALTDSSVATGLCSPVLPAGPEPFKAKFPFGGLLDSMQTSETSKLQQLVENIDKKMTDPNQCVICHRVLSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTHFGVHRAKPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTPLPEGFQDAMDAELPYDEKAVEALSGYDDDMDDNSLEEDAAGDPSKPLLSLSSSCPPSPPSVISSIAALENQMKMIDSVMSCPQLTALKSMENGSGESDRLSNDSSSAVGDLESRSAGSPAPSESSSSMQALSPVNSNSESLHSKSPGLSAQEEPQETPLKTERPDSPPPAPENGGALDLTATHPGRPAIKEEAPFSLLFLSRERGPSQSTPSLLTGPAPTLVKMEVNGHSKAIPLAEGPPPAAVQVPTGPPTVLSPGLAPMLAPPPRRTPKQHNCQSCGKTFSSASALQIHERTHTGEKPFGCSICGRAFTTKGNLKVHMGTHMWNNAPARRGRRLSVENPMALLGGDALKFSEMFQKDLAARAMNVDPSFWNQYAAAITNGLAMKNNEISVIQNGGLPQLPVSLGGSAIPPMGSLAAGLDKARPGGSPPVVGLDKASAEPGAGRPFTRFVEDNKEVGIN", "length": 954, "header": "tr|A0A286ZKN0-1|F1SNN6_PIG Computationally mapped isoform of Sal-like protein 3 OS=Sus scrofa OX=9823 GN=SALL3 PE=3 SV=2 CANONICAL=F1SNN6-1" }, "locus": { "chromosome": "1", "start_pos": 146273707, "end_pos": 146256732, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037746.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037746.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032124.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032124.2" } ] } }, { "isoform_ac": "F1SNN6-1", "url": "https://www.uniprot.org/uniprotkb/F1SNN6/entry#F1SNN6-1", "sequence": { "sequence": "MSRRKQAKPQHLKSDEELPPPDGAPEHAVPGEGADDGDSGNESRSGSEETNVCEKCCAEFFKWTDFLEHKKACTKNPLVLIVNEDEPAPPSEEFPEPSPASSPSEQTESEAAEEAAPPEGGEGGEGRAPEKEDEPMEVGPSPDKSFQSPGPAHTGKPPLPQIPEPAPVAAYSMPNTNVTLETLLSTKVAVAQFSQNTRAAGTVGSSGGVTAVAIPMILEQLMALQQQQIHQLQLIEQIRSQVAMMNRQPLRPPLNPGAAAGSQTAPVPASGQLPGLATPSALQLSAGAAPVPTASGPAAQSASYEGPQHLSQPASGASTPHVPGGGSSVPELGAPASSGAAPASTAPASVASALSSAPQPQNASTPPALGPGPLLSSAPSLPSPLLPQTSASSVIFPNPLVSIAATHRKGKPPNVSVFEPKASAEDPFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYPVPEYLDNVPTCSGIPYGMSLPPEKPVTTWLDSKPVLPTVPTSVGLQLPPTLPSVSSYADSPGLTPASRSPQRPSPASSECPSLSPGLNSSESGIPGAAESPQPGLGGTSLTKSEPSSLPCTNARAGDVPTSGQVSAAGTPALTDSSVATGLCSPVLPAGPEPFKAKFPFGGLLDSMQTSETSKLQQLVENIDKKMTDPNQCVICHRVLSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTHFGVHRAKPPLRVQHSCPICQKKFTNAVVLQQHIRMHMGGQIPNTPLPEGFQDAMDAELPYDEKAVEALSGYDDDMDDNSLEEDAAGDPSKPLLSLSSSCPPSPPSVISSIAALENQMKMIDSVMSCPQLTALKSMENGSGESDRLSNDSSSAVGDLESRSAGSPAPSESSSSMQALSPVNSNSESLHSKSPGLSAQEEPQETPLKTERPDSPPPAPENGGALDLTATHPGRPAIKEEAPFSLLFLSRERGKCESTVCRVCAKPFACRSALEIHHRSHTKERPFVCAVCRRGCSTLGNLKQHLLTHRLRELPSQLLAPNFALGPSQSTPSLLTGPAPTLVKMEVNGHSKAIPLAEGPPPAAVQVPTGPPTVLSPGLAPMLAPPPRRTPKQHNCQSCGKTFSSASALQIHERTHTGEKPFGCSICGRAFTTKGNLKVHMGTHMWNNAPARRGRRLSVENPMALLGGDALKFSEMFQKDLAARAMNVDPSFWNQYAAAITNGLAMKNNEISVIQNGGLPQLPVSLGGSAIPPMGSLAAGLDKARPGGSPPVVGLDKASAEPGAGRPFTRFVEDNKEVGIN", "length": 1316, "header": "tr|F1SNN6-1|F1SNN6_PIG Isoform 1 of Sal-like protein 3 OS=Sus scrofa OX=9823 GN=SALL3 PE=3 SV=4 CANONICAL=F1SNN6-1" }, "locus": { "chromosome": "1", "start_pos": 146273707, "end_pos": 146256732, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005364.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005364.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005232.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005232.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1066, "start_aa": "Thr", "end_pos": 1066, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1066", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 278, "start_aa": "Thr", "end_pos": 278, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr278", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 532, "start_aa": "Thr", "end_pos": 532, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr532", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 633, "start_aa": "Thr", "end_pos": 633, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr633", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZKN0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZKN0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" }, { "name": "limb morphogenesis", "id": "GO:0035108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035108", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" }, { "name": "olfactory bulb development", "id": "GO:0021772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021772", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SNN6", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 582, "end_pos": 584, "annotation": "n_glycosylation_sequon" }, { "start_pos": 876, "end_pos": 878, "annotation": "n_glycosylation_sequon" }, { "start_pos": 886, "end_pos": 888, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNN6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNN6" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 431, "end_pos": 458, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 278, 532, 633, 1066 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 177, "end_pos": 179 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 414, "end_pos": 416 }, { "start_pos": 41, "end_pos": 43 }, { "start_pos": 582, "end_pos": 584 }, { "start_pos": 876, "end_pos": 878 }, { "start_pos": 886, "end_pos": 888 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SH89-1", "uniprot_ac": "F1SH89", "uniprot_id": "F1SH89_PIG", "mass": { "chemical_mass": 65526.0, "monoisotopic_mass": 65526.0 }, "refseq": { "ac": "XP_005669704", "name": "choline dehydrogenase, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669704" }, "gene_names": [ { "name": "CHDH", "type": "recommended", "evidence": [ { "id": "F1SH89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH89" } ] }, { "name": "CHDH", "type": "synonym", "evidence": [ { "id": "XP_005669704", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669704" } ] } ], "protein_names": [ { "name": "Choline dehydrogenase", "type": "recommended", "evidence": [ { "id": "F1SH89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH89/entry#names_and_taxonomy" } ] }, { "name": "1.1.99.1", "type": "synonym", "evidence": [ { "id": "F1SH89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH89/entry#names_and_taxonomy" } ] }, { "name": "choline dehydrogenase, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_005669704", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669704" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SH89", "url": "https://www.uniprot.org/uniprotkb/F1SH89" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHDH", "url": "https://www.uniprot.org/uniprotkb/F1SH89", "locus": { "chromosome": "13", "start_pos": 35910698, "end_pos": 35948683, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011456", "url": "https://www.ensembl.org/id/ENSSSCG00000011456" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011456", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011456", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000011458", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011458", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100151982", "url": "https://www.ncbi.nlm.nih.gov/gene/100151982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011533", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011533", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151982", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151982", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NHFESCA", "url": "https://omabrowser.org/oma/group/NHFESCA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SH89", "url": "https://www.orthodb.org/?gene=F1SH89", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11552", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11552", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11552:SF147", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11552:SF147", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00732", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00732", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05199", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05199", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05834", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05834", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005669704", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669704", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17433", "url": "https://www.rhea-db.org/rhea/17433", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZM06", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZM06-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH89", "url": "https://www.uniprot.org/uniprotkb/F1SH89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH89-1", "url": "https://www.uniprot.org/uniprotkb/F1SH89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRCVLQGWKLGRLGPWGALGPHGPRGIHTLASAGSCSGGEYSHVVVGAGSAGCVLANRLTEDPDERVLLLEAGPKDLYAGSKRLLWKIHMPAALVDNLCDDRYNWCYHTEPQPGLDSRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQREGAAGWDYAHCLPYFRKAQTHELGAGRYRGGDGPLHVSRGKSGHPLHHAFLEAAQQAGYPFTEDMNGFQQEGFGWMDMTIHKGKRWSTACAYLHPALSRPNLTAEAQTLVSRVLFEGTRAVGVEYIKNGQSHRAYASKEVILSGGVINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEVYIQQACTHPITLHSAQKPLRKVQIGLEWLWRFTGYGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPHDHPVIQPNYLSTETDIDDFRHCVRLTREIFAQKALAPFRGKELQPGSHVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPMAVVDPQTRVLGVENLRVVDASIMPSVVSGNLNAPTIMIAEKAADIIRGRPALWDEDVPVYKPRTLATQR", "length": 594, "header": "tr|F1SH89-1|F1SH89_PIG Isoform 1 of Choline dehydrogenase OS=Sus scrofa OX=9823 GN=CHDH PE=1 SV=3 CANONICAL=F1SH89-1" }, "isoforms": [ { "isoform_ac": "A0A286ZM06-1", "url": "https://www.uniprot.org/uniprotkb/F1SH89/entry#A0A286ZM06-1", "sequence": { "sequence": "MRCVLQGWKLGRLGPWGALGPHGPRGIHTLASAGSCSGGEYSHVVVGAGSAGCVLANRLTEDPDERVLLLEAGPKDLYAGSKRLLWKIHMPAALVDNLCDDRYRGGDGPLHVSRGKSGHPLHHAFLEAAQQAGYPFTEDMNGFQQEGFGWMDMTIHKGKRWSTACAYLHPALSRPNLTAEAQTLVSRVLFEGTRAVGVEYIKNGQSHRAYASKEVILSGGVINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEVYIQQACTHPITLHSAQKPLRKVQIGLEWLWRFTGYGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPHDHPVIQPNYLSTETDIDDFRHCVRLTREIFAQKALAPFRGKELQPGSHVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPMAVVDPQTRVLGVENLRVVDASIMPSVVSGNLNAPTIMIAEKAADIIRGRPALWDEDVPVYKPRTLATQR", "length": 517, "header": "tr|A0A286ZM06-1|F1SH89_PIG Computationally mapped isoform of Choline dehydrogenase OS=Sus scrofa OX=9823 GN=CHDH PE=1 SV=1 CANONICAL=F1SH89-1" }, "locus": { "chromosome": "13", "start_pos": 35923717, "end_pos": 35913775, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052066.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052066.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032590.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032590.1" } ] } }, { "isoform_ac": "F1SH89-1", "url": "https://www.uniprot.org/uniprotkb/F1SH89/entry#F1SH89-1", "sequence": { "sequence": "MRCVLQGWKLGRLGPWGALGPHGPRGIHTLASAGSCSGGEYSHVVVGAGSAGCVLANRLTEDPDERVLLLEAGPKDLYAGSKRLLWKIHMPAALVDNLCDDRYNWCYHTEPQPGLDSRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQREGAAGWDYAHCLPYFRKAQTHELGAGRYRGGDGPLHVSRGKSGHPLHHAFLEAAQQAGYPFTEDMNGFQQEGFGWMDMTIHKGKRWSTACAYLHPALSRPNLTAEAQTLVSRVLFEGTRAVGVEYIKNGQSHRAYASKEVILSGGVINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEVYIQQACTHPITLHSAQKPLRKVQIGLEWLWRFTGYGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPHDHPVIQPNYLSTETDIDDFRHCVRLTREIFAQKALAPFRGKELQPGSHVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPMAVVDPQTRVLGVENLRVVDASIMPSVVSGNLNAPTIMIAEKAADIIRGRPALWDEDVPVYKPRTLATQR", "length": 594, "header": "tr|F1SH89-1|F1SH89_PIG Isoform 1 of Choline dehydrogenase OS=Sus scrofa OX=9823 GN=CHDH PE=1 SV=3 CANONICAL=F1SH89-1" }, "locus": { "chromosome": "13", "start_pos": 35923717, "end_pos": 35913775, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012537.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012537.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012209.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012209.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZM06", "url": "https://www.uniprot.org/uniprotkb/A0A286ZM06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151982", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151982", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798163", "resource": "Reactome", "description": "Choline catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7GWJ5-1", "protein_name": "Choline dehydrogenase", "gene_name": "Chdh", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWPVLRGWGRGCLSQRGALAWAVLGQPWPSCCRAMTRATSVGQDEYSFIVVGAGSAGCVLASRLTEDPNYRVLLLEAGPKDLLMGSKRLLWKIHMPAALVANLCDDKYNWYYYTEAQPGLDGRKLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHQQGAEGWDYAHCLPYFRKAQKHELGANRYRGGDGPLHVSRGKTNHPLHQAFLQAAHQAGYPFTEDMNGFQQEGFGWMDMTIHQGKRWSTACAYLHPALSRPNLRTEVQTLVSRVLFEGTRAVGVEYIKNGKSHKVYASKEVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTQPITLHSAQMPLRKVCIGLEWLWRFTGDGATAHLETGGFIRSQPGVPHPDIQYHFLPSQVIDHGRKPTQQDAYQVHVGPIRATSVGWLKLRSANPQDHPVIHPNYLSTETDIQDFRQCVRLTREIFAQEALAPFRGQELQPGIHVQSDEEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDLQTRVLGVENLRVVDASIMPNVVSGNLNAPTIMIAEKAADIIKGYPALWDKDVPVYKPQTLATQR", "length": 599 }, "evidence": [ { "id": "F1SH89", "url": "https://omabrowser.org/oma/group/F1SH89/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1ADH7-1", "protein_name": "Choline dehydrogenase", "gene_name": "CHDH", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPARTPRSYPFQYNLRGRVRRTSPRSCSYCFESALNSPDRLCTTAEEPDVPADSCRPPPPQTAPPARGRGRVTGSGFGPARLRCRNYGKTLDFFLNSARAVLLVKMSYLINGVKHCSPMNQMHKVTGALFKACLLRNTWRIKEQQLKISRALSQLSSEKANSYNYVIVGAGSAGCVLANRLTEDPHSTVLLLEAGPKDTLLGSKRLLWKIHMPAALTYNLCDEKYNWYYHTTSQKHMDNRIMYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWSREGAIGWDYDHCLPYFKKAQTHELGSDQYRGGKGPLYVSRGKTNHPLHQAFLDATQQAGYPFTDDMNGYQQEGFGWMDMTIHQGKRWSTASAYLHPALSRPNLSVTEKTLVTKILFQGTKSIGVEYVKNGQTEKAFASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEVYVQHKCTKPITLYSAQKPVNMARIGLEWLWKFTGEGATAHLESGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVASTMEAYQVHVGPMRSASVGWLKLKSADPKDHPIIEPNYMSAERDIWEFRQCVKLTREIFAQKAFEKFRGPEIQPGNNVQSDKEIDAFIRQKTDSAYHPSCTCKMGQPSDGTAVVDPQTKVIGVENLRVVDASIMPSIVSGNLNAPTIMIAEKAADIIKGLPSLQEKNVPVYKPKTLETQR", "length": 716 }, "evidence": [ { "id": "F1SH89", "url": "https://omabrowser.org/oma/group/F1SH89/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6UPE0-1", "protein_name": "Choline dehydrogenase, mitochondrial", "gene_name": "Chdh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWQVLRSWSKRCLSPRGALAWAAQGQPRPPCSCAVASAASGGKDEYTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVANLCDDKYNWYYHTEAQPGLDGRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHRQGAEGWDYAHCLPYFRKAQKHELGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTIHQGKRWSTASAYLRPALSRPNLRAEVQTLVSRVLFEGTRAVGVEYIKDGQSHKAYVSREVILSGGAINSPQLLMLSGVGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQHACTQPITLHSAQKPLRKVCIGLEWLWRFTGDGATAHLETGGFIRSRPGVPHPDIQFHFLPSQVIDHGRKPTQQEAYQVHVGTMRATSVGWLKLRSTNPQDHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGKELQPGSHVQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMPSVVSGNLNAPTIMIAEKAADVIKGCPALGDENVPVYKPQTLDTQR", "length": 599 }, "evidence": [ { "id": "F1SH89", "url": "https://omabrowser.org/oma/group/F1SH89/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BJ64-1", "protein_name": "Choline dehydrogenase, mitochondrial", "gene_name": "Chdh", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWQVLRGWRKGWQSPRGALAWAVQGQPCPPCSRAVASVGKDEYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIHMPAALVSNLCDDKYNWYYHTEPQPGMDSRVLYWPRGRVWGGSSSLNAMVYIRGHAEDYNRWHREGAEGWDYAHCLPYFRKAQRHELGANMYRGGDGPLHVSRGKTNHPLHQAFLQAARQAGYPFTEDMNGFQQEGFGWMDMTVHQGKRWSTACAYLHPVLSRPNLRAEVQTLVSRVLFEGTRAVGVEYIKDGQRHKAYVSREVILSGGAINSPQLLMLSGVGNADDLRKLDIPVVCHLPGVGQNLQDHLEVYVQQACTQPITLHSAQKPLRKVCIGLEWLWSYTGDGATAHLETGGFIRSRPGVPHPDIQFHFLPSQVIDHGRKPTQQEAYQVHVGTMRATSVGWLKLRSANPRDHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAPFRGKELQPGSHVQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMPSVVSGNLNAPTVMIAEKAADIIKGHPALEDKNVPVYKPQTLDTQR", "length": 596 }, "evidence": [ { "id": "F1SH89", "url": "https://omabrowser.org/oma/group/F1SH89/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NE62-1", "protein_name": "Choline dehydrogenase, mitochondrial", "gene_name": "CHDH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWCLLRGLGRPGALARGALGQQQSLGARALASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGLDGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGHELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLFEGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRSQPGVPHPDIQFHFLPSQVIDHGRVPTQQEAYQVHVGPMRGTSVGWLKLRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIKGQPALWDKDVPVYKPRTLATQR", "length": 594 }, "evidence": [ { "id": "F1SH89", "url": "https://omabrowser.org/oma/group/F1SH89/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "oxidoreductase activity, acting on CH-OH group of donors", "id": "GO:0016614", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016614", "evidence": [ { "database": "UniProtKB", "id": "F1SH89", "url": "https://www.uniprot.org/uniprotkb/F1SH89" } ], "pmid": "" }, { "name": "flavin adenine dinucleotide binding", "id": "GO:0050660", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050660", "evidence": [ { "database": "UniProtKB", "id": "F1SH89", "url": "https://www.uniprot.org/uniprotkb/F1SH89" } ], "pmid": "" }, { "name": "choline dehydrogenase activity", "id": "GO:0008812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008812", "evidence": [ { "database": "UniProtKB", "id": "F1SH89", "url": "https://www.uniprot.org/uniprotkb/F1SH89" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SH89", "url": "https://www.uniprot.org/uniprotkb/F1SH89" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glycine betaine biosynthetic process from choline", "id": "GO:0019285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019285", "evidence": [ { "database": "UniProtKB", "id": "F1SH89", "url": "https://www.uniprot.org/uniprotkb/F1SH89" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17433", "name": "", "equation": "choline + A = betaine aldehyde + AH2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17433", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17433" } ] }, { "id": "R-SSC-6797961", "name": "CHDH oxidises Cho to BETALD", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial inner membrane, mitochondrial matrix", "input_participant_list": [ "R-ALL-9757044" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6797961", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6797961" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-9757044", "participant_name": "hydrogen acceptor [mitochondrial matrix]", "crossref": [ { "id": "13193", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SH89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH89" }, { "id": "PS00623", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00623" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glucose-methanol-choline oxidoreductase N-terminal", "eco_id": "ECO_0000259", "start_pos": 125, "end_pos": 148, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 253, "end_pos": 255 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPM2-1", "uniprot_ac": "F1SPM2", "uniprot_id": "F1SPM2_PIG", "mass": { "chemical_mass": 73276.0, "monoisotopic_mass": 73276.0 }, "refseq": { "ac": "XP_003125117", "name": "rho GTPase-activating protein 25 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125117" }, "gene_names": [ { "name": "ARHGAP25", "type": "recommended", "evidence": [ { "id": "F1SPM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" } ] }, { "name": "ARHGAP25", "type": "synonym", "evidence": [ { "id": "XP_003125117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125117" } ] } ], "protein_names": [ { "name": "Rho GTPase activating protein 25", "type": "synonym", "evidence": [ { "id": "F1SPM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM2/entry#names_and_taxonomy" } ] }, { "name": "rho GTPase-activating protein 25 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003125117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125117" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPM2", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ARHGAP25", "url": "https://www.uniprot.org/uniprotkb/F1SPM2", "locus": { "chromosome": "3", "start_pos": 73556565, "end_pos": 73649849, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008344", "url": "https://www.ensembl.org/id/ENSSSCG00000008344" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008344", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008344", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04390", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04390", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13263", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13263", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514401", "url": "https://www.ncbi.nlm.nih.gov/gene/100514401", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514401", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514401", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HRASTYD", "url": "https://omabrowser.org/oma/group/HRASTYD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPM2", "url": "https://www.orthodb.org/?gene=F1SPM2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15228:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15228:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125117", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125117", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZQ80", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQ80-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPM2", "url": "https://www.uniprot.org/uniprotkb/F1SPM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLKLPRNWDFSLRGEAGKIARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSPPAPKNDPKKPPVARSSVGWDASEDPPISRTDSINNMTSDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQSRKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDTQRTSTYDNVPVQPGSPGDKADALSPQAYDSKRDAPGSPNSEARPGKKNSGEEELESFQRMLVQELRKEIQTQKQMYEEQIKNLEKENYDVWTKVVRLNEELEKEKKKSAALEISLRNVERSLEDVERRNKALEEEVKEFVRSMKEPKTNA", "length": 647, "header": "tr|F1SPM2-1|F1SPM2_PIG Isoform 1 of Rho GTPase activating protein 25 OS=Sus scrofa OX=9823 GN=ARHGAP25 PE=4 SV=3 CANONICAL=F1SPM2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZQ80-1", "url": "https://www.uniprot.org/uniprotkb/F1SPM2/entry#A0A286ZQ80-1", "sequence": { "sequence": "MTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSPPAPKNDPKKPPVARSSVGWDASEDPPISRTDSINNMTSDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQSRKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDTQRTSTYDNVPVQPGSPGDKADALSPQAYDSKRDAPGSPNSEARPGKKNSGEEELESFQRMLVQELRKEIQTQKQMYEEQIKNLEKENYDVWTKVVRLNEELEKEKKKSAALEISLRNVERSLEDVERRNKALEEEVKEFVRSMKEPKTNA", "length": 621, "header": "tr|A0A286ZQ80-1|F1SPM2_PIG Computationally mapped isoform of Rho GTPase activating protein 25 OS=Sus scrofa OX=9823 GN=ARHGAP25 PE=4 SV=2 CANONICAL=F1SPM2-1" }, "locus": { "chromosome": "3", "start_pos": 73607560, "end_pos": 73558307, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039146.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039146.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033766.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033766.2" } ] } }, { "isoform_ac": "F1SPM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPM2/entry#F1SPM2-1", "sequence": { "sequence": "MSLKLPRNWDFSLRGEAGKIARSRSVMTGEQMAAFHPASSPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDVKPQGYMYLPGSTIKEIATNPEEAGKFVFEVIPASCDQSRTGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGLNEEGIFRLPGQDNLVKQLRDAFDAGERPNFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSILPRDNYSLLSYICRFLHEIQLNCGVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSPPAPKNDPKKPPVARSSVGWDASEDPPISRTDSINNMTSDSDATSPTGQRPNDGCLEDSIKASKEKPGDWKMQSRKRTQTLPNRKCFLTSALQGANSCKTEVIKNEFCSPSSEAKAGEGHRRTMSQGVPQFFDTQRTSTYDNVPVQPGSPGDKADALSPQAYDSKRDAPGSPNSEARPGKKNSGEEELESFQRMLVQELRKEIQTQKQMYEEQIKNLEKENYDVWTKVVRLNEELEKEKKKSAALEISLRNVERSLEDVERRNKALEEEVKEFVRSMKEPKTNA", "length": 647, "header": "tr|F1SPM2-1|F1SPM2_PIG Isoform 1 of Rho GTPase activating protein 25 OS=Sus scrofa OX=9823 GN=ARHGAP25 PE=4 SV=3 CANONICAL=F1SPM2-1" }, "locus": { "chromosome": "3", "start_pos": 73649593, "end_pos": 73558307, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009138.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009138.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008907.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008907.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZQ80", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQ80" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514401", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514401", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PK72-1", "protein_name": "Rho GTPase-activating protein 24", "gene_name": "ARHGAP25", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSLKLPRNWDFNLKMDAAKIARSRSVMSGEAVTTRPGSPSSMERPLKLGWLKKQRSIVKNWQQRYFVLRGQQLYYYKDEDDTKPQGCLSLQGSTIKEVSGNPEEGGKFIFEIIPGVSGDQNRAGQDTCVLMANSQSDMEEWVKSIRRVLGSTSGAVFGQCLAETMAYEQKFGQHQVPILVQKCAEFIREHGVNEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRELPEPVVPWIQYEDFLLCGQTLDMDQKKGHQDLLKQLSLLPRDNYNLLSYICRFLYEVQLNSAVNKMSVDNLATVIGVNLIRPKIEDPATIMRGTLPIQKVMTVMISNHADLFPPSKDVLPSPTAQQNDKKTPILRSSVGWDSAEDSTLPRAESSVQRQMKDHPSASRAPGLAVSSRAPSEDTGLQPSKDTVGMWKMQARKRTQTLPNRKSFLTAASPGEKGSSDRNDIFNSDFWKGSTQSNPHSVLTEGHKRTLSHDLFKLLDLHRASAYDNVPTSHLESSSSSPSPASSCSDKEFQPCPSPCHHPQDPTSPASSPSEVFQPASESKESLQSMVLKLQREMDEQKETYEEQIKSLEKENYDVWAKVVRLNQDIEREKKKSEELELKLKNMERLQEDLEKKNKMLEEEIKTIAKSRSKSDAKTN", "length": 664 }, "evidence": [ { "id": "F1SPM2", "url": "https://omabrowser.org/oma/group/F1SPM2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8I6A5M6-1", "protein_name": "Rho GTPase activating protein 25", "gene_name": "Arhgap25", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSLQPGSALQETCVESLGTIKARSRSVMTGEQMAAFHPPTTPNPLERPIKMGWLKKQRSIVKNWQQRYFVLKARQLYYYKDEEDSKPQGCMYLPGSTVKEIATNPEEAGKFVFEVIPASSDQNRTGQDSYVLMASSQVEMEEWVKFLRRVAGTPSGAVFGQRLDETVAYEQKFGPHLVPILVEKCSEFILEHGVSEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLTNADEAKAQQELEKQLSILPRDNYNLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPLSPPAQKNDAKKAPVPRSSVGWDATEDPPLSRTDSFNNTASSPDATSPTGPQPGDQHQEDSGKAPKENPGDWKMQSRKRTQTLPNRKCFLTSAFQGTTSSKLEIFKNEFWSPSSEAKAGEGHRRTMSQDLRHLSNDQRTSTYDNVPNPPVSQGNPAGELSPPASDSKRDAPVSTDSEMESGSKNSGEEDPDSLQRTVQHLQKEIEAQKQMYEEQIKNLEKENYDVWAKVVRLNEELERERKKFAALEISLRNVERSREDVEKRNRVLEEEVKEFVKSMEKSKTKTDA", "length": 650 }, "evidence": [ { "id": "F1SPM2", "url": "https://omabrowser.org/oma/group/F1SPM2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P42331-1", "protein_name": "Rho GTPase-activating protein 25", "gene_name": "ARHGAP25", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLKLPRNWDFNLKVEAAKIARSRSVMTGEQMAAFHPSSTPNPLERPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGTPCGVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGRNEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLTNADEAKAQQELMKQLSILPRDNYSLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDIPLSPPAQKNDPKKAPVARSSVGWDATEDLRISRTDSFSSMTSDSDTTSPTGQQPSDAFPEDSSKVPREKPGDWKMQSRKRTQTLPNRKCFLTSAFQGANSSKMEIFKNEFWSPSSEAKAGEGHRRTMSQDLRQLSDSQRTSTYDNVPSLPGSPGEEASALSSQACDSKGDTLASPNSETGPGKKNSGEEEIDSLQRMVQELRKEIETQKQMYEEQIKNLEKENYDVWAKVVRLNEELEKEKKKSAALEISLRNMERSREDVEKRNKALEEEVKEFVKSMKEPKTEA", "length": 645 }, "evidence": [ { "id": "F1SPM2", "url": "https://omabrowser.org/oma/group/F1SPM2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BYW1-1", "protein_name": "Rho GTPase-activating protein 25", "gene_name": "Arhgap25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLKLPRNWDFNLKAEASKIARSRSVMTGEQMAAFHPPTTPNPLERPIKVGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDSKPQGCMYLPGSTVKEIATNPEEAGKFVFEVIPASSDQNRIGQDSYVLMASSQVEMEEWVKFLRRVAGTPSGAVFGQRLDETVAYEQKFGPHLVPILVEKCAEFILEHGVSEEGIFRLPGQDNLVKQLRDAFDAGERPSFDRDTDVHTVASLLKLYLRDLPEPVVPWSQYEGFLLCGQLMNADEAKAQQELVKQLSTLPRDNYNLLSYICRFLHEIQLNCAVNKMSVDNLATVIGVNLIRSKVEDPAVIMRGTPQIQRVMTMMIRDHEVLFPKSKDAPISPPAQKNDAKKAPVPRSSVGWDATEDPPLSRTDSFSNTASSPDATSPTGPLPSDQHQEDSGKAPRENPGDWKMQSRKRTQTLPNRKCFLTSAFQGTTSSKLEIFKNEFWSPSSEAKAGEGHRRTMSQDLRHLSNDQRTSTYDNVPTSPQSQGNPAGALSPPASDSKRDALVSTDSEMEAGSKNSGEDDLDSLQRTVQSLQKEIETQKQVYEEQIKNLEKENYDVWAKVVRLNEELERERKKFAALEISLRNVERSREDVEKRNRVLEEEVKEFVKSMEKPKTKTDP", "length": 648 }, "evidence": [ { "id": "F1SPM2", "url": "https://omabrowser.org/oma/group/F1SPM2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8RWQ4-1", "protein_name": "Rho GTPase-activating protein 7", "gene_name": "ROPGAP7", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEASLAALERPRGSASNTVFKSGPLFISSKGLGWTSWKKRWFILTRTSLVFFKNDPGTLPQKGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETFEDLYEWKTALEQALAQAPNAALIMGQNGIFRAETNEAIEGREKRPLKSLVVGRPILLALEDIDGSPSFLEKALQFIEKYGTKIEGILRQSADVEEVERRVQEYEQGKTEFTFDEDPHVVGDCIKHVLRELPSSPVSASCCTALLEAYRIESKEARISSLRSAIAETFPEPNRRLLQRILKMMHTISSHSHENRMNPNAVAACMAPLLLRPLLAGECDLEDDFDGGEDNSAQLLAAANAANNAQAIITVLLEDYGSIFDEENIQRCSISTESHIGNSGPDDSSDDDNNMKNGYHNADNEVEPVTDDDNDRALSGKMSESSGCTGSDLYEYKGFVADDSDIESPRDTNGPRCNSNIRTDHLMRNPFVNSTDQQAGEQIGDDPTKYGVNSCLAHVSESYQQSGTGLNVPTHGNTLAAPGLESPSAKSVNKGTPSSVHAKRATFWGRGSARKISTDGSFDSSGEDELAIQRLETTKNELRQRIAKEARGNAILQASLERRKQALHERRLSLEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSHGVDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQTHFGSFSDARDTHQYLQNHNPQKRFLQQDFDSTLAYVNHERKQRHEENVLGAEWRNSKGAGSFGVGNSRQPSRKQIPESTNTTDSKISEESGKISVDKLSSIDSPSIPSTSRVLDITEYPRLNHPSAAASAALVELTTRLDFFKERRSQLMEQLQNLDLNYGGSSSQDFIHRPSSPPWN", "length": 870 }, "evidence": [ { "id": "F1SPM2", "url": "https://omabrowser.org/oma/group/F1SPM2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1SPM2", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SPM2", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" } ], "pmid": "" }, { "name": "regulation of small GTPase mediated signal transduction", "id": "GO:0051056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051056", "evidence": [ { "database": "UniProtKB", "id": "F1SPM2", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" } ], "pmid": "" }, { "name": "phagocytosis, engulfment", "id": "GO:0006911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006911", "evidence": [ { "database": "UniProtKB", "id": "F1SPM2", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" } ], "pmid": "" }, { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "F1SPM2", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" } ], "pmid": "" }, { "name": "negative regulation of small GTPase mediated signal transduction", "id": "GO:0051058", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051058", "evidence": [ { "database": "UniProtKB", "id": "F1SPM2", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "phagocytic cup", "id": "GO:0001891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001891", "evidence": [ { "database": "UniProtKB", "id": "F1SPM2", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 151, "start_aa": "Arg", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPM2" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 160, "end_pos": 354, "start_aa": "Gln", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 285, "end_pos": 287 }, { "start_pos": 399, "end_pos": 401 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SH42-1", "uniprot_ac": "F1SH42", "uniprot_id": "F1SH42_PIG", "mass": { "chemical_mass": 54377.0, "monoisotopic_mass": 54377.0 }, "refseq": { "ac": "XP_020947636", "name": "rab-3A-interacting protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947636" }, "gene_names": [ { "name": "RAB3IP", "type": "recommended", "evidence": [ { "id": "F1SH42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH42" } ] }, { "name": "RAB3IP", "type": "synonym", "evidence": [ { "id": "XP_020947636", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947636" } ] } ], "protein_names": [ { "name": "RAB3A interacting protein", "type": "synonym", "evidence": [ { "id": "F1SH42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH42/entry#names_and_taxonomy" } ] }, { "name": "rab-3A-interacting protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020947636", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947636" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SH42", "url": "https://www.uniprot.org/uniprotkb/F1SH42" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAB3IP", "url": "https://www.uniprot.org/uniprotkb/F1SH42", "locus": { "chromosome": "5", "start_pos": 34053896, "end_pos": 34003180, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000500", "url": "https://www.ensembl.org/id/ENSSSCG00000000500" } ] } } ], "crossref": [ { "id": "F1SH42", "url": "https://alphafold.ebi.ac.uk/entry/F1SH42", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000500", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000500", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21068", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21068", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152578", "url": "https://www.ncbi.nlm.nih.gov/gene/100152578", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040351", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040351", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SH42", "url": "https://www.orthodb.org/?gene=F1SH42", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14430:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14430:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06428", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06428", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25555", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25555", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620916", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620916", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620922", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620922", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947636", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947636", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZRG6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZRG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZRG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AC37", "url": "https://www.uniprot.org/uniprotkb/A0A287AC37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AC37-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC37-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGM5", "url": "https://www.uniprot.org/uniprotkb/A0A287AGM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AGM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AGM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AI20", "url": "https://www.uniprot.org/uniprotkb/A0A287AI20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AI20-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AI20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GUA8", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GUA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GUA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GUA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH42", "url": "https://www.uniprot.org/uniprotkb/F1SH42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH42-1", "url": "https://www.uniprot.org/uniprotkb/F1SH42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKGLSYDEAFAMANDPLEGFHEVNLASPTSPDLLGVYEPGTQEQTTSPSVIYRPHPSALCSAPIQANALDVSDLPTQPVYSSPRRLNCAELSSVSIHVTDSAPCSTSGVTAGLTKLTTRKDNCNAEREFLQGATVTEACDSSEDIFGLSTDSLSRLRSPSVLEVREKGYERLKEELAKAQRELKLKDEECERLSKVRDQLGQELEELTASLFEEAHKMVREANVKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTHFKKGHTRNKSTSSAMSGSHQDLSVIQPIVKDCKEGFFSSLLYLADHGVPAGNLADLSLYNEFRSWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPVRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEEL", "length": 491, "header": "tr|F1SH42-1|F1SH42_PIG Isoform 1 of RAB3A interacting protein OS=Sus scrofa OX=9823 GN=RAB3IP PE=1 SV=5 CANONICAL=F1SH42-1" }, "isoforms": [ { "isoform_ac": "A0A286ZRG6-1", "url": "https://www.uniprot.org/uniprotkb/F1SH42/entry#A0A286ZRG6-1", "sequence": { "sequence": "MAKGLSYDEAFAMANDPLEGFHEVNLASPTSPDLLGVYEPGTQEQTTSPSVIYRPHPSALCSAPIQANALDVSDLPTQPVYSSPRRLNCAELSSVSIHVTDSAPCSTSGVTAGLTKLTTRKDNCNAEREFLQGATVTEACDSSEDIFGLSTDSLSRLRSPSVLEVREKGYERLKEELAKAQREAHKMVREANVKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTHFKKGHTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRSWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPVRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEEL", "length": 440, "header": "tr|A0A286ZRG6-1|F1SH42_PIG Computationally mapped isoform of RAB3A interacting protein OS=Sus scrofa OX=9823 GN=RAB3IP PE=1 SV=1 CANONICAL=F1SH42-1" }, "locus": { "chromosome": "5", "start_pos": 34053620, "end_pos": 34004166, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043485.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043485.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034176.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034176.1" } ] } }, { "isoform_ac": "A0A287AC37-1", "url": "https://www.uniprot.org/uniprotkb/F1SH42/entry#A0A287AC37-1", "sequence": { "sequence": "MWIVSLNPHSNLEKGGAFAMANDPLEGFHEVNLASPTSPDLLGVYEPGTQEQTTSPSVIYRPHPSALCSAPIQANALDVSDLPTQPVYSSPRRLNCAELSSVSIHVTDSAPCSTSGVTAGLTKLTTRKDNCNAEREFLQGATVTEACDSSEDIFGLSTDSLSRLRSPSVLEVREKGYERLKEELAKAQRELKLKDEECERLSKVRDQLGQELEELTASLFEEAHKMVREANVKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTHFKKGHTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRSWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPVRFVKASAVECGGPKYVFKTMSYGRY", "length": 407, "header": "tr|A0A287AC37-1|F1SH42_PIG Computationally mapped isoform of RAB3A interacting protein OS=Sus scrofa OX=9823 GN=RAB3IP PE=1 SV=2 CANONICAL=F1SH42-1" }, "locus": { "chromosome": "5", "start_pos": 34047105, "end_pos": 34017979, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040564.2", "url": "https://www.ensembl.org/id/ENSSSCT00000040564.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041455.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041455.2" } ] } }, { "isoform_ac": "A0A287AGM5-1", "url": "https://www.uniprot.org/uniprotkb/F1SH42/entry#A0A287AGM5-1", "sequence": { "sequence": "ELADLSLYNEFRSWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPVRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEEL", "length": 166, "header": "tr|A0A287AGM5-1|F1SH42_PIG Computationally mapped isoform of RAB3A interacting protein OS=Sus scrofa OX=9823 GN=RAB3IP PE=1 SV=3 CANONICAL=F1SH42-1" }, "locus": { "chromosome": "5", "start_pos": 34053620, "end_pos": 34045303, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044383.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044383.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043190.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043190.3" } ] } }, { "isoform_ac": "A0A287AI20-1", "url": "https://www.uniprot.org/uniprotkb/F1SH42/entry#A0A287AI20-1", "sequence": { "sequence": "MAKGLSYDEAFAMANDPLEGFHEVNLASPTSPDLLGVYEPGTQEQTTSPSVIYRPHPSALCSAPIQANALDVSDLPTQPVYSSPRRLNCAELSSVSIHVTDSAPCSTSGVTAGLTKLTTRKDNCNAEREFLQGATVTEACDSSEDIFGLSTDSLSRLRSPSVLEVREKGYERLKEELAKAQRELKLKDEECERLSKVRDQLGQELEELTASLFEEAHKMVREANVKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTHFKKGHTRNKSTSSAMSGSHQDLSVIQPIVKDCKEADLSLYNEFRSWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPVRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVLMKSEVAKM", "length": 455, "header": "tr|A0A287AI20-1|F1SH42_PIG Computationally mapped isoform of RAB3A interacting protein OS=Sus scrofa OX=9823 GN=RAB3IP PE=1 SV=2 CANONICAL=F1SH42-1" }, "locus": { "chromosome": "5", "start_pos": 34053141, "end_pos": 34004166, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045775.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045775.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043682.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043682.2" } ] } }, { "isoform_ac": "A0A8D1GUA8-1", "url": "https://www.uniprot.org/uniprotkb/F1SH42/entry#A0A8D1GUA8-1", "sequence": { "sequence": "EMIADLSLYNEFRSWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPVRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEEL", "length": 167, "header": "tr|A0A8D1GUA8-1|F1SH42_PIG Computationally mapped isoform of RAB3A interacting protein OS=Sus scrofa OX=9823 GN=RAB3IP PE=1 SV=1 CANONICAL=F1SH42-1" }, "locus": { "chromosome": "5", "start_pos": 34053620, "end_pos": 34042597, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096397.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096397.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074609.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074609.1" } ] } }, { "isoform_ac": "F1SH42-1", "url": "https://www.uniprot.org/uniprotkb/F1SH42/entry#F1SH42-1", "sequence": { "sequence": "MAKGLSYDEAFAMANDPLEGFHEVNLASPTSPDLLGVYEPGTQEQTTSPSVIYRPHPSALCSAPIQANALDVSDLPTQPVYSSPRRLNCAELSSVSIHVTDSAPCSTSGVTAGLTKLTTRKDNCNAEREFLQGATVTEACDSSEDIFGLSTDSLSRLRSPSVLEVREKGYERLKEELAKAQRELKLKDEECERLSKVRDQLGQELEELTASLFEEAHKMVREANVKQATAEKQLKEAQGKIDVLQAEVAALKTLVLSSSPTSPTQEPLPGGKTHFKKGHTRNKSTSSAMSGSHQDLSVIQPIVKDCKEGFFSSLLYLADHGVPAGNLADLSLYNEFRSWKDEPTMDRTCPFLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPVRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLGYFKEEL", "length": 491, "header": "tr|F1SH42-1|F1SH42_PIG Isoform 1 of RAB3A interacting protein OS=Sus scrofa OX=9823 GN=RAB3IP PE=1 SV=5 CANONICAL=F1SH42-1" }, "locus": { "chromosome": "5", "start_pos": 34053620, "end_pos": 34004166, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000539.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000539.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000531.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000531.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1GUA8", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GUA8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" }, { "id": "R-SSC-5620916", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620916", "resource": "Reactome", "description": "VxPx cargo-targeting to cilium" }, { "id": "R-SSC-5620922", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620922", "resource": "Reactome", "description": "BBSome-mediated cargo-targeting to cilium" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1SH42", "url": "https://www.uniprot.org/uniprotkb/F1SH42" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SH42", "url": "https://www.uniprot.org/uniprotkb/F1SH42" } ], "pmid": "" }, { "name": "protein targeting to membrane", "id": "GO:0006612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006612", "evidence": [ { "database": "UniProtKB", "id": "F1SH42", "url": "https://www.uniprot.org/uniprotkb/F1SH42" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SH42", "url": "https://www.uniprot.org/uniprotkb/F1SH42" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SH42", "url": "https://www.uniprot.org/uniprotkb/F1SH42" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SH42", "url": "https://www.uniprot.org/uniprotkb/F1SH42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SH42-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 491, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SH42-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SH42" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SH42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH42" }, { "id": "PF06428", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06428" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GDP/GTP exchange factor Sec2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 169, "end_pos": 254, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 282, "end_pos": 284 }, { "start_pos": 381, "end_pos": 383 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI94-1", "uniprot_ac": "F1SI94", "uniprot_id": "F1SI94_PIG", "mass": { "chemical_mass": 38492.0, "monoisotopic_mass": 38492.0 }, "refseq": {}, "gene_names": [ { "name": "PEX16", "type": "recommended", "evidence": [ { "id": "F1SI94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ] } ], "protein_names": [ { "name": "Peroxisomal membrane protein PEX16", "type": "recommended", "evidence": [ { "id": "F1SI94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI94/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PEX16", "url": "https://www.uniprot.org/uniprotkb/F1SI94", "locus": { "chromosome": "2", "start_pos": 16561685, "end_pos": 16555051, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013267", "url": "https://www.ensembl.org/id/ENSSSCG00000013267" } ] } } ], "crossref": [ { "id": "F1SI94", "url": "https://alphafold.ebi.ac.uk/entry/F1SI94", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013267", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013267", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13299", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13299", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13299:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13299:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08610", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08610", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9603798", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9603798", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJS9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJS9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI94-1", "url": "https://www.uniprot.org/uniprotkb/F1SI94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKLRLLGLRYQEYVTRHPAATAQLETAVRGLSYLLAGRFADSHELSELVYSASNLLVLLNDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAKAVLRMFLLIWFKAGLQTSPPIVPLDRETQAQPQDGDHSCGSGEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQREGQQQQQREELSIPPTPLGLQETIAESLYIARPLLHLLSLGLWGQRSWTPWLLSGVVDVTSLSLLSDRKGLTRRERLELRRRTILLLYYLLRSPFYDRFSEAKILFLLQLLADHVPGIGLVTRPLMDYLPTWQKIYFYNWG", "length": 336, "header": "tr|F1SI94-1|F1SI94_PIG Isoform 1 of Peroxisomal membrane protein PEX16 OS=Sus scrofa OX=9823 GN=PEX16 PE=1 SV=3 CANONICAL=F1SI94-1" }, "isoforms": [ { "isoform_ac": "A0A286ZTJ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SI94/entry#A0A286ZTJ0-1", "sequence": { "sequence": "MEKLRLLGLRYQEYVTRHPAATAQLETAVRGLSYLLAGRFADSHELSELVYSASNLLVLLNDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAKYVGTLEGRPWVEVTEASCADRVHPVKFSTQGCTADVPADLVLASRHHPPSFHWTGRPRHSPRELSIPPTPLGLQETIAESLYIARPLLHLLSLGLWGQRSWTPWLLSGVVDVTSLSLLSDRKGLTRRERLELRRRTILLLYYLLRSPFYDRFSEAKILFLLQLLADHVPGIGLVTRPLMDYLPTWQKIYFYNWG", "length": 314, "header": "tr|A0A286ZTJ0-1|F1SI94_PIG Computationally mapped isoform of Peroxisomal membrane protein PEX16 OS=Sus scrofa OX=9823 GN=PEX16 PE=1 SV=2 CANONICAL=F1SI94-1" }, "locus": { "chromosome": "2", "start_pos": 16560681, "end_pos": 16555137, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061335.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061335.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034968.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034968.2" } ] } }, { "isoform_ac": "A0A5G2QJS9-1", "url": "https://www.uniprot.org/uniprotkb/F1SI94/entry#A0A5G2QJS9-1", "sequence": { "sequence": "MEKLRLLGLRYQEYVTRHPAATAQLETAVRGLSYLLAGRFADSHELSELVYSASNLLVLLNDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAKYVGTLEGRPWVEVTEASCADRVQQRLYCGSGGRQQQQQREELSIPPTPLGLQETIAESLYIARPLLHLLSLGLWGQRSWTPWLLSGVVDVTSLSLLSDRKGLTRRERLELRRRTILLLYYLLRSPFYDRFSEAKILFLLQLLADHVPGIGLVTRPLMDYLPTWQKIYFYNWG", "length": 292, "header": "tr|A0A5G2QJS9-1|F1SI94_PIG Computationally mapped isoform of Peroxisomal membrane protein PEX16 OS=Sus scrofa OX=9823 GN=PEX16 PE=1 SV=1 CANONICAL=F1SI94-1" }, "locus": { "chromosome": "2", "start_pos": 16560681, "end_pos": 16555137, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105581.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105581.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075383.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075383.1" } ] } }, { "isoform_ac": "F1SI94-1", "url": "https://www.uniprot.org/uniprotkb/F1SI94/entry#F1SI94-1", "sequence": { "sequence": "MEKLRLLGLRYQEYVTRHPAATAQLETAVRGLSYLLAGRFADSHELSELVYSASNLLVLLNDGILRKELRKKLPVSLSQQKLLTWLSVLECVEVFMEMGAAKVWGEVGRWLVIALIQLAKAVLRMFLLIWFKAGLQTSPPIVPLDRETQAQPQDGDHSCGSGEQSYVGKRSNRVVRTLQNTPSLHSRHWGAPQQREGQQQQQREELSIPPTPLGLQETIAESLYIARPLLHLLSLGLWGQRSWTPWLLSGVVDVTSLSLLSDRKGLTRRERLELRRRTILLLYYLLRSPFYDRFSEAKILFLLQLLADHVPGIGLVTRPLMDYLPTWQKIYFYNWG", "length": 336, "header": "tr|F1SI94-1|F1SI94_PIG Isoform 1 of Peroxisomal membrane protein PEX16 OS=Sus scrofa OX=9823 GN=PEX16 PE=1 SV=3 CANONICAL=F1SI94-1" }, "locus": { "chromosome": "2", "start_pos": 16560681, "end_pos": 16555137, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014491.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014491.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014099.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014099.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 211, "start_aa": "Thr", "end_pos": 211, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr211", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJS9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJS9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9603798", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9603798", "resource": "Reactome", "description": "Class I peroxisomal membrane protein import" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "peroxisomal membrane", "id": "GO:0005778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005778", "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "peroxisome organization", "id": "GO:0007031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007031", "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "pmid": "" }, { "name": "protein targeting to peroxisome", "id": "GO:0006625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006625", "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "pmid": "" }, { "name": "peroxisome membrane biogenesis", "id": "GO:0016557", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016557", "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "pmid": "" }, { "name": "protein to membrane docking", "id": "GO:0022615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022615", "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "pmid": "" }, { "name": "ER-dependent peroxisome organization", "id": "GO:0032581", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032581", "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "pmid": "" }, { "name": "protein import into peroxisome membrane", "id": "GO:0045046", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045046", "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "pmid": "" }, { "name": "ER-dependent peroxisome localization", "id": "GO:0106101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106101", "evidence": [ { "database": "UniProtKB", "id": "F1SI94", "url": "https://www.uniprot.org/uniprotkb/F1SI94" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SI94-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 336, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SI94-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SI94" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 211 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPI4-1", "uniprot_ac": "F1SPI4", "uniprot_id": "F1SPI4_PIG", "mass": { "chemical_mass": 112607.0, "monoisotopic_mass": 112607.0 }, "refseq": { "ac": "XP_013837458", "name": "glutamate receptor-interacting protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013837458" }, "gene_names": [ { "name": "GRIP2", "type": "recommended", "evidence": [ { "id": "F1SPI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI4" } ] }, { "name": "GRIP2", "type": "synonym", "evidence": [ { "id": "XP_013837458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013837458" } ] } ], "protein_names": [ { "name": "Glutamate receptor interacting protein 2", "type": "synonym", "evidence": [ { "id": "F1SPI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI4/entry#names_and_taxonomy" } ] }, { "name": "glutamate receptor-interacting protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013837458", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013837458" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPI4", "url": "https://www.uniprot.org/uniprotkb/F1SPI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GRIP2", "url": "https://www.uniprot.org/uniprotkb/F1SPI4", "locus": { "chromosome": "13", "start_pos": 70088718, "end_pos": 69988459, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011599", "url": "https://www.ensembl.org/id/ENSSSCG00000011599" } ] } } ], "crossref": [ { "id": "F1SPI4", "url": "https://alphafold.ebi.ac.uk/entry/F1SPI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011599", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011599", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06681", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06681", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06682", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06682", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06683", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06683", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06684", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06684", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06685", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06685", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06686", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06686", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06687", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06687", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513882", "url": "https://www.ncbi.nlm.nih.gov/gene/100513882", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041489", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041489", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513882", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513882", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZVU1", "url": "https://www.orthodb.org/?gene=A0A286ZVU1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46227", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46227", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46227:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46227:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17820", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17820", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-416993", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416993", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013837458", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013837458", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZVU1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZVU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPI4", "url": "https://www.uniprot.org/uniprotkb/F1SPI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAVSLKWRLGVVRRRPKDDGPYSKAGKDAGGADVALACRRQSIPEEFRGVTVVELTKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIHLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPGIIAKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVDGIPLHGASHATALATLRQCSHEALFQVEYDVAVPDTVASASGPLIVEITKTPGSTLGISLTTGSHRNKPVITIDRIKPASVVDRSGALHAGDHILSINGTSMEHCSLLEATKLLASVSEKVRLEILPAPQSRRPLKPSEAVKVQRSEQPHRWDPCVPSCHSPRPGHCRTSTWATPAGQDQSQSLSSSPFSSPTLNHAFPCTNPSTLPRGSQPMSPRTTMGRRRQRRREHKSSLSLASSTVGPGGQIVHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVRFIEPDSPAERCGLLQVGDRVLAINGIATEDGTMEEANQLLRDAALARKVVLEVEFDVAESVIPSSGTFHVKLPKRRGVELGITISSASRKRGEPLVISDIKKGSVAHRTGTLEPGDKLLAIDNIRLDNCPMEDAVQILRQCEDLVKLKIRKDEDNSDEQETTGAISYTVELKRYGGPLGITISGTEEPFDPIVISGLTKRGLAERTGAIHVGDHILAINSVSLKGRPLSEAIHLLQVAGETVTLKIKKQLDRPLPPRKSGSLSEASDVDEDPSEALKGSLLAARSSPAVPSVDSAVESWGSSTTEGGFGGPGSYTTQAARGMTPQEWRSSRLRSSPPPTEPRRTSYTPAPTDESFPEEEEDWEPPTSPAPGPAREEGFWRMFGEALEDLESCGQSELLRELEASIMTGTMQNMALEGRPGPQPWRRGREVRASSEEMQELLLPTPLEMHKVTLHKDPVRSDFGFSVSDGLLEKGVYVHTVRPDGPAQRGGLRPFDRVLQVNHVRTRDFDCCLTVPLLAEAGDVLELVISRNPLAQSSRTPRVPGPSSAQML", "length": 1044, "header": "tr|F1SPI4-1|F1SPI4_PIG Isoform 1 of Glutamate receptor interacting protein 2 OS=Sus scrofa OX=9823 GN=GRIP2 PE=4 SV=3 CANONICAL=F1SPI4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZVU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI4/entry#A0A286ZVU1-1", "sequence": { "sequence": "MLCGLSRETPGEADDGPYSKAGKDAGGADVALACRRQSIPEEFRGVTVVELTKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIHLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPGIIAKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVDGIPLHGASHATALATLRQCSHEALFQVEYDVAVPDTVASASGPLIVEITKTPGSTLGISLTTGSHRNKPVITIDRIKPASVVDRSGALHAGDHILSINGTSMEHCSLLEATKLLASVSEKVRLEILPAPQSRRPLKPSEAVKVQRSEQPHRWDPCVPSCHSPRPGHCRTSTWATPAGQDQSQSLSSSPFSSPTLNHAFPCTNPSTLPRGSQPMSPRTTMGRRRQRRREHKSSLSLASSTVGPGGQIVHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVRFIEPDSPAERCGLLQVGDRVLAINGIATEDGTMEEANQLLRDAALARKVVLEVEFDVAESVIPSSGTFHVKLPKRRGVELGITISSASRKRGEPLVISDIKKGSVAHRTGTLEPGDKLLAIDNIRLDNCPMEDAVQILRQCEDLVKLKIRKDEDNSDEQETTGAISYTVELKRYGGPLGITISGTEEPFDPIVISGLTKRGLAERTGAIHVGDHILAINSVSLKGRPLSEAIHLLQVAGETVTLKIKKQLDRPLPPRKSGSLSEASDVDEDPSEALKGSLLAARSSPAVPSVDSAVESWGSSTTEGGFGGPGSYTTQAARGMTPQEWRSSRLRSSPPPTEPRRTSYTPAPTDESFPEEEEDWEPPTSPAPGPAREEGFWRMFGEALEDLESCGQSELLRELEASIMTGTMQNMALEGRPGPQPWRRGREVRASSEEMQELLLPTPLEMHKVTLHKDPVRSDFGFSVSDGLLEKGVYVHTVRPDGPAQRGGLRPFDRVLQVNHVRTRDFDCCLTVPLLAEAGDVLELVISRNPLAQSSRTPRVPGPSSAQML", "length": 1039, "header": "tr|A0A286ZVU1-1|F1SPI4_PIG Computationally mapped isoform of Glutamate receptor interacting protein 2 OS=Sus scrofa OX=9823 GN=GRIP2 PE=4 SV=2 CANONICAL=F1SPI4-1" }, "locus": { "chromosome": "13", "start_pos": 70086423, "end_pos": 70004756, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061810.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061810.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035610.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035610.2" } ] } }, { "isoform_ac": "F1SPI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI4/entry#F1SPI4-1", "sequence": { "sequence": "MLAVSLKWRLGVVRRRPKDDGPYSKAGKDAGGADVALACRRQSIPEEFRGVTVVELTKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIHLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPGIIAKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVDGIPLHGASHATALATLRQCSHEALFQVEYDVAVPDTVASASGPLIVEITKTPGSTLGISLTTGSHRNKPVITIDRIKPASVVDRSGALHAGDHILSINGTSMEHCSLLEATKLLASVSEKVRLEILPAPQSRRPLKPSEAVKVQRSEQPHRWDPCVPSCHSPRPGHCRTSTWATPAGQDQSQSLSSSPFSSPTLNHAFPCTNPSTLPRGSQPMSPRTTMGRRRQRRREHKSSLSLASSTVGPGGQIVHTETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVRFIEPDSPAERCGLLQVGDRVLAINGIATEDGTMEEANQLLRDAALARKVVLEVEFDVAESVIPSSGTFHVKLPKRRGVELGITISSASRKRGEPLVISDIKKGSVAHRTGTLEPGDKLLAIDNIRLDNCPMEDAVQILRQCEDLVKLKIRKDEDNSDEQETTGAISYTVELKRYGGPLGITISGTEEPFDPIVISGLTKRGLAERTGAIHVGDHILAINSVSLKGRPLSEAIHLLQVAGETVTLKIKKQLDRPLPPRKSGSLSEASDVDEDPSEALKGSLLAARSSPAVPSVDSAVESWGSSTTEGGFGGPGSYTTQAARGMTPQEWRSSRLRSSPPPTEPRRTSYTPAPTDESFPEEEEDWEPPTSPAPGPAREEGFWRMFGEALEDLESCGQSELLRELEASIMTGTMQNMALEGRPGPQPWRRGREVRASSEEMQELLLPTPLEMHKVTLHKDPVRSDFGFSVSDGLLEKGVYVHTVRPDGPAQRGGLRPFDRVLQVNHVRTRDFDCCLTVPLLAEAGDVLELVISRNPLAQSSRTPRVPGPSSAQML", "length": 1044, "header": "tr|F1SPI4-1|F1SPI4_PIG Isoform 1 of Glutamate receptor interacting protein 2 OS=Sus scrofa OX=9823 GN=GRIP2 PE=4 SV=3 CANONICAL=F1SPI4-1" }, "locus": { "chromosome": "13", "start_pos": 70086423, "end_pos": 69988728, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012696.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012696.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012363.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012363.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 382, "start_aa": "Thr", "end_pos": 382, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr382", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZVU1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVU1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513882", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513882", "resource": "KEGG Pathway" }, { "id": "R-SSC-416993", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416993", "resource": "Reactome", "description": "Trafficking of GluR2-containing AMPA receptors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SPI4", "url": "https://www.uniprot.org/uniprotkb/F1SPI4" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SPI4", "url": "https://www.uniprot.org/uniprotkb/F1SPI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "neurotransmitter receptor transport, endosome to postsynaptic membrane", "id": "GO:0098887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098887", "evidence": [ { "database": "UniProtKB", "id": "F1SPI4", "url": "https://www.uniprot.org/uniprotkb/F1SPI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPI4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1044, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPI4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPI4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI4" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 53, "end_pos": 136, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 382 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 306, "end_pos": 308 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMZ6-1", "uniprot_ac": "F1SMZ6", "uniprot_id": "F1SMZ6_PIG", "mass": { "chemical_mass": 10960.0, "monoisotopic_mass": 10960.0 }, "refseq": {}, "gene_names": [ { "name": "HSPE1", "type": "recommended", "evidence": [ { "id": "F1SMZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ] } ], "protein_names": [ { "name": "10 kDa heat shock protein, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SMZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6/entry#names_and_taxonomy" } ] }, { "name": "10 kDa chaperonin", "type": "synonym", "evidence": [ { "id": "F1SMZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6/entry#names_and_taxonomy" } ] }, { "name": "Chaperonin 10", "type": "synonym", "evidence": [ { "id": "F1SMZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Co-chaperonin implicated in mitochondrial protein import and macromolecular assembly. Together with Hsp60, facilitates the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix. The functional units of these chaperonins consist of heptameric rings of the large subunit Hsp60, which function as a back-to-back double ring. In a cyclic reaction, Hsp60 ring complexes bind one unfolded substrate protein per ring, followed by the binding of ATP and association with 2 heptameric rings of the co-chaperonin Hsp10. This leads to sequestration of the substrate protein in the inner cavity of Hsp60 where, for a certain period of time, it can fold undisturbed by other cell components. Synchronous hydrolysis of ATP in all Hsp60 subunits results in the dissociation of the chaperonin rings and the release of ADP and the folded substrate protein.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R8I0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8I0#function" }, { "database": "UniProtKB", "id": "ARBA00046093", "url": "https://www.uniprot.org/uniprotkb/ARBA00046093#function" }, { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6#function" }, { "database": "UniProtKB", "id": "A0A8W4FL80", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL80#function" }, { "database": "UniProtKB", "id": "A0A287A1U5", "url": "https://www.uniprot.org/uniprotkb/A0A287A1U5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HSPE1", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6", "locus": { "chromosome": "15", "start_pos": 101376144, "end_pos": 101373976, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016078", "url": "https://www.ensembl.org/id/ENSSSCG00000016078" } ] } } ], "crossref": [ { "id": "F1SMZ6", "url": "https://alphafold.ebi.ac.uk/entry/F1SMZ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016078", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016078", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00320", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00320", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR011032", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011032", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018369", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018369", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020818", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020818", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10772", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10772", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10772:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10772:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00166", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00166", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A1U5", "url": "https://www.uniprot.org/uniprotkb/A0A287A1U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1U5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8I0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8I0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8I0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FL80", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FL80-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FL80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102, "header": "tr|F1SMZ6-1|F1SMZ6_PIG Isoform 1 of 10 kDa heat shock protein, mitochondrial OS=Sus scrofa OX=9823 GN=HSPE1 PE=1 SV=1 CANONICAL=F1SMZ6-1" }, "isoforms": [ { "isoform_ac": "A0A287A1U5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6/entry#A0A287A1U5-1", "sequence": { "sequence": "MLALKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 99, "header": "tr|A0A287A1U5-1|F1SMZ6_PIG Computationally mapped isoform of 10 kDa heat shock protein, mitochondrial OS=Sus scrofa OX=9823 GN=HSPE1 PE=1 SV=1 CANONICAL=F1SMZ6-1" }, "locus": { "chromosome": "15", "start_pos": 101375944, "end_pos": 101374574, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057636.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057636.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037894.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037894.2" } ] } }, { "isoform_ac": "A0A5G2QEY3-1", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6/entry#A0A5G2QEY3-1", "sequence": { "sequence": "MGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 47, "header": "tr|A0A5G2QEY3-1|F1SMZ6_PIG Computationally mapped isoform of 10 kDa heat shock protein, mitochondrial OS=Sus scrofa OX=9823 GN=HSPE1 PE=1 SV=1 CANONICAL=F1SMZ6-1" }, "locus": { "chromosome": "15", "start_pos": 101375944, "end_pos": 101374079, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083792.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083792.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063266.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063266.1" } ] } }, { "isoform_ac": "A0A5G2R8I0-1", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6/entry#A0A5G2R8I0-1", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKVCKLNNFNKLSIRC", "length": 100, "header": "tr|A0A5G2R8I0-1|F1SMZ6_PIG Computationally mapped isoform of 10 kDa heat shock protein, mitochondrial OS=Sus scrofa OX=9823 GN=HSPE1 PE=1 SV=1 CANONICAL=F1SMZ6-1" }, "locus": { "chromosome": "15", "start_pos": 101375862, "end_pos": 101374079, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068440.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068440.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066918.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066918.1" } ] } }, { "isoform_ac": "A0A8W4FL80-1", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6/entry#A0A8W4FL80-1", "sequence": { "sequence": "AGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 101, "header": "tr|A0A8W4FL80-1|F1SMZ6_PIG Computationally mapped isoform of 10 kDa heat shock protein, mitochondrial OS=Sus scrofa OX=9823 GN=HSPE1 PE=1 SV=1 CANONICAL=F1SMZ6-1" }, "locus": { "chromosome": "15", "start_pos": 101375944, "end_pos": 101374609, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102289.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102289.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080231.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080231.1" } ] } }, { "isoform_ac": "F1SMZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6/entry#F1SMZ6-1", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102, "header": "tr|F1SMZ6-1|F1SMZ6_PIG Isoform 1 of 10 kDa heat shock protein, mitochondrial OS=Sus scrofa OX=9823 GN=HSPE1 PE=1 SV=1 CANONICAL=F1SMZ6-1" }, "locus": { "chromosome": "15", "start_pos": 101375944, "end_pos": 101374079, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017506.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017506.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017034.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017034.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QEY3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEY3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "resource": "Reactome", "description": "RHOG GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "F1SMZ6", "url": "https://omabrowser.org/oma/group/F1SMZ6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ], "pmid": "" }, { "name": "protein folding chaperone", "id": "GO:0044183", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044183", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ], "pmid": "" }, { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ], "pmid": "" }, { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ6", "url": "https://www.uniprot.org/uniprotkb/F1SMZ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMZ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 102, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMZ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMZ6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SL30-1", "uniprot_ac": "F1SL30", "uniprot_id": "F1SL30_PIG", "mass": { "chemical_mass": 49011.0, "monoisotopic_mass": 49011.0 }, "refseq": {}, "gene_names": [ { "name": "CD27", "type": "recommended", "evidence": [ { "id": "F1SL30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ] }, { "name": "TAPBPL", "type": "recommended", "evidence": [ { "id": "F1SL30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ] }, { "name": "TAPBPL", "type": "synonym", "evidence": [ { "id": "F1SL30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ] } ], "protein_names": [ { "name": "Tapasin-related protein", "type": "recommended", "evidence": [ { "id": "F1SL30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL30/entry#names_and_taxonomy" } ] }, { "name": "TAP-binding protein-like", "type": "synonym", "evidence": [ { "id": "F1SL30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL30/entry#names_and_taxonomy" } ] }, { "name": "TAP-binding protein-related protein", "type": "synonym", "evidence": [ { "id": "F1SL30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL30/entry#names_and_taxonomy" } ] }, { "name": "Tapasin-like", "type": "synonym", "evidence": [ { "id": "F1SL30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL30/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CD27", "url": "https://www.uniprot.org/uniprotkb/F1SL30", "locus": { "chromosome": "5", "start_pos": 64196994, "end_pos": 64202613, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000063084", "url": "https://www.ensembl.org/id/ENSSSCG00000063084" } ] } } ], "crossref": [ { "id": "F1SL30", "url": "https://alphafold.ebi.ac.uk/entry/F1SL30", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000704", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000704", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000000705", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000705", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23411", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23411", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A6N6", "url": "https://www.uniprot.org/uniprotkb/A0A287A6N6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6N6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6N6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIR6", "url": "https://www.uniprot.org/uniprotkb/A0A287AIR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL30-1", "url": "https://www.uniprot.org/uniprotkb/F1SL30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL31", "url": "https://www.uniprot.org/uniprotkb/F1SL31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL31-1", "url": "https://www.uniprot.org/uniprotkb/F1SL31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAEGWCLLLCLLLSRVADAVERQWRAVDVVLDCFLMEEGGHRGAFARSGNKMKALLVLKQAPVPDDGSLEGLTDFQVGTLAKDDPPITFEASVNLVQLPQAEALLHADCGGKEVTCEISRYFLQARQEATVETAAWFITNVQVSGGGPSISMVMKTLGDAEKGAALHPTLNVPLSPQGTVPTAVEFQVTTQTPSLNLLLGSTASLHCGFSMAPGLDLTSVEWRQQHGGSGHLVYSWTTMGQGQAQREGATLDPEQLLMAGDATLTLPSLTVKDEGAYICQITTSLYQTQQIVQLHVQAAPKVRLSLVNEAHSHTLICSVTGYYPLDVTVTWIREELGGALVPVSDASFSSLRQSAAGTYSISSSLTADPGSAGATYTCHITHISLKDPLVANTWVAPQAKRQKKKKKKKKPEKSTEQGTAFGILFASSLFLLALLFLGLQRRQGKKEPGRSRLWP", "length": 456, "header": "tr|F1SL30-1|F1SL30_PIG Isoform 1 of Tapasin-related protein OS=Sus scrofa OX=9823 GN=CD27 PE=1 SV=2 CANONICAL=F1SL30-1" }, "isoforms": [ { "isoform_ac": "A0A287A6N6-1", "url": "https://www.uniprot.org/uniprotkb/F1SL30/entry#A0A287A6N6-1", "sequence": { "sequence": "MEEGGHRGAFARSGNKMKALLVLKQAPVPDDGSLEGLTDFQVGTLAKDDPPITFEASVNLVQLPQAEALLHADCGGKEVTCEISRYFLQARQEATVETAAWFITNVQVSGGGPSISMVMKTLGDAEKGAALHPTLNVPLSPQGTVPTAVEFQVTTQTPSLNLLLGSTASLHCGFSMAPGLDLTSVEWRQQHGGSGHLVYSWTTMGQGQAQREGATLDPEQLLMAGDATLTLPSLTVKDEGAYICQITTSLYQTQQIVQLHVQAAPKVRLSLVNEAHSHTLICSVTGYYPLDVTVTWIREELGGALVPVSDASFSSLRQSAAGTYSISSSLTADPGSAGATYTCHITHISLKDPLVANTWVAPQATEQGTAFGILFASSLFLLALLFLGLQRRQAASPKPAETPRHFG", "length": 407, "header": "tr|A0A287A6N6-1|F1SL30_PIG Computationally mapped isoform of Tapasin-related protein OS=Sus scrofa OX=9823 GN=CD27 PE=1 SV=1 CANONICAL=F1SL30-1" }, "locus": { "chromosome": "5", "start_pos": 64195736, "end_pos": 64189312, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041672.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041672.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044972.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044972.1" } ] } }, { "isoform_ac": "A0A287AIR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SL30/entry#A0A287AIR6-1", "sequence": { "sequence": "MEEGGHRGAFARSGNKMKALLVLKQAPVPDDGSLEGLTDFQVGTLAKDDPPITFEASVNLVQLPQAEALLHADCGGKEVTCEISRYFLQARQEATVETAAWFITNVQVSGGGPSISMVMKTLGDAEKGAALHPTLNVPLSPQGTVPTAVEFQVTTQTPSLNLLLGSTASLHCGFSMAPGLDLTSVEWRQQHGGSGHLVYSWTTMGQGQAQREGATLDPEQLLMAGDATLTLPSLTVKDEGAYICQITTSLYQTQQIVQLHVQAAPKVRLSLVNEAHSHTLICSVTGYYPLDVTVTWIREELGGALVPVSDASFSSLRQSAAGTYSISSSLTADPGSAGATYTCHITHISLKDPLVANTWVAPQATEQGTAFGILFASSLFLLALLFLGLQRRQGKKEPGRSRLWP", "length": 405, "header": "tr|A0A287AIR6-1|F1SL30_PIG Computationally mapped isoform of Tapasin-related protein OS=Sus scrofa OX=9823 GN=CD27 PE=1 SV=1 CANONICAL=F1SL30-1" }, "locus": { "chromosome": "5", "start_pos": 64195736, "end_pos": 64189511, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057268.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057268.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043791.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043791.1" } ] } }, { "isoform_ac": "F1SL30-1", "url": "https://www.uniprot.org/uniprotkb/F1SL30/entry#F1SL30-1", "sequence": { "sequence": "MGAEGWCLLLCLLLSRVADAVERQWRAVDVVLDCFLMEEGGHRGAFARSGNKMKALLVLKQAPVPDDGSLEGLTDFQVGTLAKDDPPITFEASVNLVQLPQAEALLHADCGGKEVTCEISRYFLQARQEATVETAAWFITNVQVSGGGPSISMVMKTLGDAEKGAALHPTLNVPLSPQGTVPTAVEFQVTTQTPSLNLLLGSTASLHCGFSMAPGLDLTSVEWRQQHGGSGHLVYSWTTMGQGQAQREGATLDPEQLLMAGDATLTLPSLTVKDEGAYICQITTSLYQTQQIVQLHVQAAPKVRLSLVNEAHSHTLICSVTGYYPLDVTVTWIREELGGALVPVSDASFSSLRQSAAGTYSISSSLTADPGSAGATYTCHITHISLKDPLVANTWVAPQAKRQKKKKKKKKPEKSTEQGTAFGILFASSLFLLALLFLGLQRRQGKKEPGRSRLWP", "length": 456, "header": "tr|F1SL30-1|F1SL30_PIG Isoform 1 of Tapasin-related protein OS=Sus scrofa OX=9823 GN=CD27 PE=1 SV=2 CANONICAL=F1SL30-1" }, "locus": { "chromosome": "5", "start_pos": 64196649, "end_pos": 64189511, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000767.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000767.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000751.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000751.2" } ] } }, { "isoform_ac": "F1SL31-1", "url": "https://www.uniprot.org/uniprotkb/F1SL30/entry#F1SL31-1", "sequence": { "sequence": "MMAPWKASRISKWARWPRTTRPLPSRPQLPQAEALLHADCGGKEVTCEISRYFLQARQEATVETAAWFITNVQVSGGGPSISMVMKTLGDAEKGAALHPTLNVPLSPQGTVPTAVEFQVTTQTPSLNLLLGSTASLHCGFSMAPGLDLTSVEWRQQHGGSGHLVYSWTTMGQGQAQREGATLDPEQLLMAGDATLTLPSLTVKDEGAYICQITTSLYQTQQIVQLHVQAAPKVRLSLVNEAHSHTLICSVTGYYPLDVTVTWIREELGGALVPVSDASFSSLRQSAAGTYSISSSLTADPGSAGATYTCHITHISLKDPLVANTWVAPQATEQGTAFGILFASSLFLLALLFLGLQRRQGKKEPGRSRLWP", "length": 371, "header": "tr|F1SL31-1|F1SL30_PIG Computationally mapped isoform of Tapasin-related protein OS=Sus scrofa OX=9823 GN=CD27 PE=1 SV=4 CANONICAL=F1SL30-1" }, "locus": { "chromosome": "5", "start_pos": 64195648, "end_pos": 64189511, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000766.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000766.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000750.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000750.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SL31", "url": "https://www.uniprot.org/uniprotkb/F1SL31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "pmid": "" }, { "name": "MHC class I peptide loading complex", "id": "GO:0042824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042824", "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "immune system process", "id": "GO:0002376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002376", "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "pmid": "" }, { "name": "peptide antigen assembly with MHC class I protein complex", "id": "GO:0002502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002502", "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "pmid": "" }, { "name": "negative regulation of antigen processing and presentation of peptide antigen via MHC class I", "id": "GO:0002590", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002590", "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "MHC class I protein complex binding", "id": "GO:0023024", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0023024", "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "pmid": "" }, { "name": "TAP complex binding", "id": "GO:0062061", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0062061", "evidence": [ { "database": "UniProtKB", "id": "F1SL30", "url": "https://www.uniprot.org/uniprotkb/F1SL30" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SL30-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 456, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SL30-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SL30" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SL30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL30" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 182, "end_pos": 293, "start_aa": "Pro", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGR3-1", "uniprot_ac": "F1SGR3", "uniprot_id": "F1SGR3_PIG", "mass": { "chemical_mass": 133912.0, "monoisotopic_mass": 133912.0 }, "refseq": { "ac": "XP_003122946", "name": "homeodomain-interacting protein kinase 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122946" }, "gene_names": [ { "name": "HIPK3", "type": "recommended", "evidence": [ { "id": "F1SGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ] }, { "name": "HIPK3", "type": "synonym", "evidence": [ { "id": "XP_003122946", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122946" } ] } ], "protein_names": [ { "name": "non-specific serine/threonine protein kinase", "type": "recommended", "evidence": [ { "id": "F1SGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGR3/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "F1SGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGR3/entry#names_and_taxonomy" } ] }, { "name": "homeodomain-interacting protein kinase 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003122946", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122946" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HIPK3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3", "locus": { "chromosome": "2", "start_pos": 27580129, "end_pos": 27685843, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013312", "url": "https://www.ensembl.org/id/ENSSSCG00000013312" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013312", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013312", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515770", "url": "https://www.ncbi.nlm.nih.gov/gene/100515770", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515770", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515770", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A9V4", "url": "https://www.orthodb.org/?gene=A0A287A9V4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SGR3", "url": "https://www.orthodb.org/?gene=F1SGR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24058", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24058", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24058:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24058:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122946", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122946", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A9V4", "url": "https://www.uniprot.org/uniprotkb/A0A287A9V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASQVLVYPPYIYQTQSSAFCSVKKLKVEPSSCIFQERRNYPWTYVTGRNIGNSHPPTKGSAFQTKIPFNRPRGHNLSLQTSAVVLKNTAGATKVIAAQAQQAQVEAPQIGAWRHRLHFLEGVQRCGLKRKSEELDNHSSAMQIVDELSILPAMLQTNMGNPVTVVTATTGTKQNCTTGEGDYQLVQHEVLCSMKNTYEVLDFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTENADEYNFVRAYECFQHRNHTCLVFEMLEQNLYDFLKQNKFSPLPLKVIRPILQQVATALKKLKSLGLIHADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKTVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGALEYDQIRYISQTQGLPGEQLLNVGTKSTRFFCRETDISHSGWRLKTLEEHETETGMKSKEARKYIFSSLDDIVHVNTVMDLEGSDLLAEKADRREFVSLLKKMLLIDADLRITPIETLNHPFVNMKHLLDFPHSNHVKSCFHIMDICKSHPNSCDTNNHNKTSLLRPVAPSSAANLTANFTKIGTLRSQALTTSAHSVVHHGIPLQAGTAHFGCGDAFQQTLIICPPALQGIPATHGKPTSYSIRVDNTVPLVTQAPAVQPLQIRPGVLSQTWSGRTQQMLVPAWQQVTPMAPATTTLASEGVAGSQRLGDWGKMISHSNHYSSVMPQPLLTNQITLSAPQPISVGIAHVVWPQPATTKKNKLCQNRGILVKLMEWEPGREEINAFSWSNSLQNTNNPQSAFISPKIVNGKDVEEVSCIETQDNHDSEGEARNCCETSIRQDSDALVSDKQRQTIIIADSPSPAVSVITISSDTDEEETSQRHSLRECKGNLDCEACQSTLNIDRMCSLSSPDSTLSTSSSGQSSPSPCKRPNSMSDEEQESGCDTVDGSPTSDSSGHDSPFAESSFVEDTHQNTELVTSTDSETKPAVCTVVVPPMGLENGLNADEHMVNTDSICQPLIKGRSVPGRLNQPSAVGNRQQKLTSAFQQQHLNFSQVQHFGSGHQEWNGNFGHRRQQAYIPTSVTSNPFTLSHGSPGHTAVHAHLAGNAHLGGQPTLLPYPSSATLSSAAPVAHLLASPCTSRPMLQHPTYNISHPSGIVHQVPVGINPRLLPSPTIHQTQYKPIFPPHSYIAASPAYTGFPLSPTKLSQYPYM", "length": 1216, "header": "tr|F1SGR3-1|F1SGR3_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=HIPK3 PE=3 SV=3 CANONICAL=F1SGR3-1" }, "isoforms": [ { "isoform_ac": "A0A287A9V4-1", "url": "https://www.uniprot.org/uniprotkb/F1SGR3/entry#A0A287A9V4-1", "sequence": { "sequence": "MASQVLVYPPYIYQTQSSAFCSVKKLKVEPSSCIFQERRNYPWTYVTGRNIGNSHPPTKGSAFQTKIPFNRPRGHNLSLQTSAVVLKNTAGATKVIAAQAQQAQVEAPQIGAWRHRLHFLEGVQRCGLKRKSEELDNHSSAMQIVDELSILPAMLQTNMGNPVTVVTATTGTKQNCTTGEGDYQLVQHEVLCSMKNTYEVLDFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTENADEYNFVRAYECFQHRNHTCLVFEMLEQNLYDFLKQNKFSPLPLKVIRPILQQVATALKKLKSLGLIHADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKTVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGALEYDQIRYISQTQGLPGEQLLNVGTKSTRFFCRETDISHSGWRLKTLEEHETETGMKSKEARKYIFSSLDDIVHVNTVMDLEGSDLLAEKADRREFVSLLKKMLLIDADLRITPIETLNHPFVNMKHLLDFPHSNHVKSCFHIMDICKSHPNSCDTNNHNKTSLLRPVAPSSAANLTANFTKIGTLRSQALTTSAHSVVHHGIPLQAGTAHFGCGDAFQQTLIICPPALQGIPATHGKPTSYSIRVDNTVPLVTQAPAVQPLQIRPGVLSQTWSGRTQQMLVPAWQQVTPMAPATTTLASEGVAGSQRLGDWGKMISHSNHYSSVMPQPLLTNQITLSAPQPISVGIAHVVWPQPATTKKNKLCQNRSNSLQNTNNPQSAFISPKIVNGKDVEEVSCIETQDNHDSEGEARNCCETSIRQDSDALVSDKQRQTIIIADSPSPAVSVITISSDTDEEETSQRHSLRECKGNLDCEACQSTLNIDRMCSLSSPDSTLSTSSSGQSSPSPCKRPNSMSDEEQESGCDTVDGSPTSDSSGHDSPFAESSFVEDTHQNTELVTSTDSETKPAVCTVVVPPMGLENGLNADEHMVNTDSICQPLIKGRSVPGRLNQPSAVGNRQQKLTSAFQQQHLNFSQVQHFGSGHQEWNGNFGHRRQQAYIPTSVTSNPFTLSHGSPGHTAVHAHLAGNAHLGGQPTLLPYPSSATLSSAAPVAHLLASPCTSRPMLQHPTYNISHPSGIVHQVPVGINPRLLPSPTIHQTQYKPIFPPHSYIAASPAYTGFPLSPTKLSQYPYM", "length": 1195, "header": "tr|A0A287A9V4-1|F1SGR3_PIG Computationally mapped isoform of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=HIPK3 PE=3 SV=1 CANONICAL=F1SGR3-1" }, "locus": { "chromosome": "2", "start_pos": 27650221, "end_pos": 27583587, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054271.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054271.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040575.1", "url": "https://www.ensembl.org/id/ENSSSCP00000040575.1" } ] } }, { "isoform_ac": "F1SGR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGR3/entry#F1SGR3-1", "sequence": { "sequence": "MASQVLVYPPYIYQTQSSAFCSVKKLKVEPSSCIFQERRNYPWTYVTGRNIGNSHPPTKGSAFQTKIPFNRPRGHNLSLQTSAVVLKNTAGATKVIAAQAQQAQVEAPQIGAWRHRLHFLEGVQRCGLKRKSEELDNHSSAMQIVDELSILPAMLQTNMGNPVTVVTATTGTKQNCTTGEGDYQLVQHEVLCSMKNTYEVLDFLGRGTFGQVVKCWKRGTNEIVAIKILKNHPSYARQGQIEVSILARLSTENADEYNFVRAYECFQHRNHTCLVFEMLEQNLYDFLKQNKFSPLPLKVIRPILQQVATALKKLKSLGLIHADLKPENIMLVDPVRQPYRVKVIDFGSASHVSKTVCSTYLQSRYYRAPEIILGLPFCEAIDMWSLGCVIAELFLGWPLYPGALEYDQIRYISQTQGLPGEQLLNVGTKSTRFFCRETDISHSGWRLKTLEEHETETGMKSKEARKYIFSSLDDIVHVNTVMDLEGSDLLAEKADRREFVSLLKKMLLIDADLRITPIETLNHPFVNMKHLLDFPHSNHVKSCFHIMDICKSHPNSCDTNNHNKTSLLRPVAPSSAANLTANFTKIGTLRSQALTTSAHSVVHHGIPLQAGTAHFGCGDAFQQTLIICPPALQGIPATHGKPTSYSIRVDNTVPLVTQAPAVQPLQIRPGVLSQTWSGRTQQMLVPAWQQVTPMAPATTTLASEGVAGSQRLGDWGKMISHSNHYSSVMPQPLLTNQITLSAPQPISVGIAHVVWPQPATTKKNKLCQNRGILVKLMEWEPGREEINAFSWSNSLQNTNNPQSAFISPKIVNGKDVEEVSCIETQDNHDSEGEARNCCETSIRQDSDALVSDKQRQTIIIADSPSPAVSVITISSDTDEEETSQRHSLRECKGNLDCEACQSTLNIDRMCSLSSPDSTLSTSSSGQSSPSPCKRPNSMSDEEQESGCDTVDGSPTSDSSGHDSPFAESSFVEDTHQNTELVTSTDSETKPAVCTVVVPPMGLENGLNADEHMVNTDSICQPLIKGRSVPGRLNQPSAVGNRQQKLTSAFQQQHLNFSQVQHFGSGHQEWNGNFGHRRQQAYIPTSVTSNPFTLSHGSPGHTAVHAHLAGNAHLGGQPTLLPYPSSATLSSAAPVAHLLASPCTSRPMLQHPTYNISHPSGIVHQVPVGINPRLLPSPTIHQTQYKPIFPPHSYIAASPAYTGFPLSPTKLSQYPYM", "length": 1216, "header": "tr|F1SGR3-1|F1SGR3_PIG Isoform 1 of non-specific serine/threonine protein kinase OS=Sus scrofa OX=9823 GN=HIPK3 PE=3 SV=3 CANONICAL=F1SGR3-1" }, "locus": { "chromosome": "2", "start_pos": 27650221, "end_pos": 27583587, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014538.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014538.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014144.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014144.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9V4", "url": "https://www.uniprot.org/uniprotkb/A0A287A9V4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515770", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515770", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" }, { "name": "protein tyrosine kinase activity", "id": "GO:0004713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004713", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" }, { "name": "PML body", "id": "GO:0016605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016605", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" }, { "name": "negative regulation of apoptotic process", "id": "GO:0043066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043066", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" }, { "name": "mRNA transcription", "id": "GO:0009299", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009299", "evidence": [ { "database": "UniProtKB", "id": "F1SGR3", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1055, "end_pos": 1057, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1154, "end_pos": 1156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" }, { "start_pos": 578, "end_pos": 580, "annotation": "n_glycosylation_sequon" }, { "start_pos": 582, "end_pos": 584, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGR3" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 198, "end_pos": 526, "start_aa": "Tyr", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1055, "end_pos": 1057 }, { "start_pos": 1154, "end_pos": 1156 }, { "start_pos": 137, "end_pos": 139 }, { "start_pos": 175, "end_pos": 177 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 563, "end_pos": 565 }, { "start_pos": 578, "end_pos": 580 }, { "start_pos": 582, "end_pos": 584 }, { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGI4-1", "uniprot_ac": "F1SGI4", "uniprot_id": "F1SGI4_PIG", "mass": { "chemical_mass": 54084.0, "monoisotopic_mass": 54084.0 }, "refseq": { "ac": "XP_020947343", "name": "keratin, type II microfibrillar, component 7C", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947343" }, "gene_names": [ { "name": "LOC100523670", "type": "recommended", "evidence": [ { "id": "F1SGI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGI4" } ] }, { "name": "LOC100523670", "type": "synonym", "evidence": [ { "id": "XP_020947343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947343" } ] } ], "protein_names": [ { "name": "IF rod domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SGI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGI4/entry#names_and_taxonomy" } ] }, { "name": "keratin, type II microfibrillar, component 7C", "type": "synonym", "evidence": [ { "id": "XP_020947343", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947343" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGI4", "url": "https://www.uniprot.org/uniprotkb/F1SGI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100523670", "url": "https://www.uniprot.org/uniprotkb/F1SGI4", "locus": {} } ], "crossref": [ { "id": "F1SGI4", "url": "https://alphafold.ebi.ac.uk/entry/F1SGI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000239", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000239", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000022657", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022657", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523670", "url": "https://www.ncbi.nlm.nih.gov/gene/100523670", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523670", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IGSACNA", "url": "https://omabrowser.org/oma/group/IGSACNA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGI4", "url": "https://www.orthodb.org/?gene=F1SGI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616:SF52", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616:SF52", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947343", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947343", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A9V9", "url": "https://www.uniprot.org/uniprotkb/A0A287A9V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A9V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A9V9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AW82", "url": "https://www.uniprot.org/uniprotkb/A0A287AW82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AW82-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AW82-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWH1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGI4", "url": "https://www.uniprot.org/uniprotkb/F1SGI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTCGFSSMSSGFSGRAFSCASACGPRPGRCCISAAPYRGISCYRGLTGGFGSRSVGGGFRAGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYIRKSDLEANVEALVQEIDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMNNIVAEIKAQYDDIASRSRAEAESWYRSKCEEIKATVVRHGETLRRTKEEINELNRMIQRLTAEIENAKCQNSKLEAAVAEAEQQGEVALNDAKCKLAELEAALQKAKQDMACLIKEYQEVLNSKLGLDIEIATYRRLLEGEEQRLCEGIGAVNVCVSSSRGGVVCGDLCVSGSRPVTGSVCSAPCSGNVAVSTGLCAPCGQLNTTCGGGSCGLGRY", "length": 493, "header": "tr|F1SGI4-1|F1SGI4_PIG Isoform 1 of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523670 PE=3 SV=2 CANONICAL=F1SGI4-1" }, "isoforms": [ { "isoform_ac": "A0A287A9V9-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI4/entry#A0A287A9V9-1", "sequence": { "sequence": "MTCGFSSMSSGFSGRAFSCASACGPRPGRCCISAAPYRGISCYRGLTGGFGSRSVGGGFRAGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYIRKSDLEANVEALVQEIDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMNNIVAEIKAESWYRSKCEEIKATVVRHGETLRRTKEEINELNRMIQRLTAEIENAKCQNSKLEAAVAEAEQQGEVALNDAKCKLAELEAALQKAKQDMACLIKEYQEVLNSKLGLDIEIATYRRLLEGEEQRLCEGIGAVNVCKYPEPRRGKFKVGQKECPWL", "length": 439, "header": "tr|A0A287A9V9-1|F1SGI4_PIG Computationally mapped isoform of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523670 PE=3 SV=3 CANONICAL=F1SGI4-1" }, "locus": { "chromosome": "5", "start_pos": 17642635, "end_pos": 17636502, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050635.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050635.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040580.3", "url": "https://www.ensembl.org/id/ENSSSCP00000040580.3" } ] } }, { "isoform_ac": "A0A287AW82-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI4/entry#A0A287AW82-1", "sequence": { "sequence": "WLWLSSGFSGRAFSCASACGPRPGRCCISAAPYRGISCYRGLTGGFGSRSVGGGFRAGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYIRKSDLEANVEALVQEIDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMNNIVAEIKAQYDDIASRSRAEAESWYRSKCEEIKATVVRHGETLRRTKEEINELNRMIQRLTAEIENAKCQNSKLEAAVAEAEQQGEVALNDAKCKLAELEAALQKAKQDMACLIKEYQEVLNSKLGLDIEIATYRRLLEGEEQREFQPILCFHFLKVTRRHKYRPEIALR", "length": 443, "header": "tr|A0A287AW82-1|F1SGI4_PIG Computationally mapped isoform of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523670 PE=3 SV=3 CANONICAL=F1SGI4-1" }, "locus": { "chromosome": "5", "start_pos": 17643284, "end_pos": 17636681, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044699.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044699.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048167.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048167.3" } ] } }, { "isoform_ac": "A0A287AWH1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI4/entry#A0A287AWH1-1", "sequence": { "sequence": "MTCGFSSMSSGFSGRAFSCASACGPRPGRCCISAAPYRGISCYRGLTGGFGSRSVGGGFRAGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYIRKSDLEANVEALVQEIDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMNNIVAEIKAQYDDIASRSRAEAESWYRSKCEEIKATVVRHGETLRRTKEEINELNRMIQRLTAEIENAKCQNSKLEAAVAEAEQQGEVALNDAKCKLAELEAALQKAKQDMACLIKEYQEVLNSKLGLDIEIGHPSCPKNSSCIDLPTFDFSIPQSQSQELAPS", "length": 440, "header": "tr|A0A287AWH1-1|F1SGI4_PIG Computationally mapped isoform of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523670 PE=3 SV=3 CANONICAL=F1SGI4-1" }, "locus": { "chromosome": "5", "start_pos": 17642635, "end_pos": 17637179, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063822.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063822.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048221.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048221.3" } ] } }, { "isoform_ac": "F1SGI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI4/entry#F1SGI4-1", "sequence": { "sequence": "MTCGFSSMSSGFSGRAFSCASACGPRPGRCCISAAPYRGISCYRGLTGGFGSRSVGGGFRAGSYGRSFGYRSGGVVRPSPPCITTVSINECLLTPLNLEIDPNAQCVKQEEKEQIKCLNNRFAAFIDKVRFLEQQNKLLETKLQFYQNRQCCESNLEPLFNGYIETLRREAELVEADSGRLASELNHVQEVLEGYKKKYEEEVALRATAENEFVALKKDVDCAYIRKSDLEANVEALVQEIDFLRRLYEEEIRVLQAHISDTSVIVKLDNSRDLNMNNIVAEIKAQYDDIASRSRAEAESWYRSKCEEIKATVVRHGETLRRTKEEINELNRMIQRLTAEIENAKCQNSKLEAAVAEAEQQGEVALNDAKCKLAELEAALQKAKQDMACLIKEYQEVLNSKLGLDIEIATYRRLLEGEEQRLCEGIGAVNVCVSSSRGGVVCGDLCVSGSRPVTGSVCSAPCSGNVAVSTGLCAPCGQLNTTCGGGSCGLGRY", "length": 493, "header": "tr|F1SGI4-1|F1SGI4_PIG Isoform 1 of IF rod domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523670 PE=3 SV=2 CANONICAL=F1SGI4-1" }, "locus": { "chromosome": "5", "start_pos": 17642635, "end_pos": 17635906, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000258.3", "url": "https://www.ensembl.org/id/ENSSSCT00000000258.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000254.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000254.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A9V9", "url": "https://www.uniprot.org/uniprotkb/A0A287A9V9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523670", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523670", "resource": "KEGG Pathway" }, { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7F8Y5-1", "protein_name": "Keratin, type II cuticular Hb1", "gene_name": "LOC100764732", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTCGFRTGNFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSHSVCGAFRSGSCGRSFGYRSGGVCGPTPPCITSVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSKFAAFIDKVRFLEQQNKLLETKWQFYQNRKCCESNVEPLFEGYIETLRREAECVEADSGRLAAELNHAQEAMEGYKKRYEEEVALRATAENEFVALKKDVDCAYLRKSDLEANAEALTQEIDFLRRLYEEEIRILHAHISDTSVIVKMDNSRDLNMDCIVAEIKAQYDDIATRSRAEAESWYRTKCEEMKATVIRHGETLRRTREEMNELNRIIQRLTAEIENAKCQNTKLEAAVTQSEQQGEAALTDARCKLAELEAALQKAKQDMACLLKEYQEVMNSKLGLDIEIATYRRLLEGEEQRLCEGVGSVNVCVSSSRGGVVSGDLCVSGSRPVTGSVCSAPCSGNVAVSTGLCAPCGSGSCYQGRC", "length": 479 }, "evidence": [ { "id": "F1SGI4", "url": "https://omabrowser.org/oma/group/F1SGI4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q14533-1", "protein_name": "Keratin, type II cuticular Hb1", "gene_name": "KRT81", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTCGSGFGGRAFSCISACGPRPGRCCITAAPYRGISCYRGLTGGFGSHSVCGGFRAGSCGRSFGYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKQEEKEQIKSLNSRFAAFIDKVRFLEQQNKLLETKLQFYQNRECCQSNLEPLFEGYIETLRREAECVEADSGRLASELNHVQEVLEGYKKKYEEEVSLRATAENEFVALKKDVDCAYLRKSDLEANVEALIQEIDFLRRLYEEEILILQSHISDTSVVVKLDNSRDLNMDCIIAEIKAQYDDIVTRSRAEAESWYRSKCEEMKATVIRHGETLRRTKEEINELNRMIQRLTAEVENAKCQNSKLEAAVAQSEQQGEAALSDARCKLAELEGALQKAKQDMACLIREYQEVMNSKLGLDIEIATYRRLLEGEEQRLCEGIGAVNVCVSSSRGGVVCGDLCVSGSRPVTGSVCSAPCNGNVAVSTGLCAPCGQLNTTCGGGSCGVGSCGISSLGVGSCGSSCRKC", "length": 505 }, "evidence": [ { "id": "F1SGI4", "url": "https://omabrowser.org/oma/group/F1SGI4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6IMF0-1", "protein_name": "Keratin, type II cuticular 87", "gene_name": "Krt87", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCFSSRLGASCGVRAFSCASACGPRPGRCCISAAPYRGISCYRGLSGGFGSRSVCGPFRSGSCGRSFGYRSGGVCGPSPPCITTVSVNESLLTPLNLEIDPNAQCVKHEEKEQIKCLNSKFAAFIDKVRFLEQQNKLLETKWQFYQNRKCCESNMEPLFEGYIEALRREAECVEADSGRLAAELNHVQESMEGYKKRYEEEVALRATSENEFVALKKDVDCAYLRKSDLEANAEALTQETDFLRQLYEEETRLLHSHISDTSVVVKMDNSRDLNMDCVVAEIKAQYDDIASRSRAEAESWYRTKCEEMKATVIRHGETLRRTREEINELNRMIQRLTAEIENAKCQNTKLEAAVTQSEQQGEAALTDARCKLAELEGALQKAKQDMACLLKEYQEVMNSKLGLDVEIITYRRLLEGEEQRLCEGVGSVNVCVSSSRGGVTCGGLTYGTTPGRQIASGPSVTGGSITVMAPDSCSPCQPRASSFTCGSSRSVRFA", "length": 495 }, "evidence": [ { "id": "F1SGI4", "url": "https://omabrowser.org/oma/group/F1SGI4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "F1SGI4", "url": "https://www.uniprot.org/uniprotkb/F1SGI4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGI4", "url": "https://www.uniprot.org/uniprotkb/F1SGI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "keratinization", "id": "GO:0031424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031424", "evidence": [ { "database": "UniProtKB", "id": "F1SGI4", "url": "https://www.uniprot.org/uniprotkb/F1SGI4" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "F1SGI4", "url": "https://www.uniprot.org/uniprotkb/F1SGI4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "F1SGI4", "url": "https://www.uniprot.org/uniprotkb/F1SGI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGI4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 493, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGI4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGI4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGI4" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 111, "end_pos": 422, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 480, "end_pos": 482 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJB9-1", "uniprot_ac": "F1SJB9", "uniprot_id": "F1SJB9_PIG", "mass": { "chemical_mass": 150439.0, "monoisotopic_mass": 150439.0 }, "refseq": {}, "gene_names": [ { "name": "CEMIP2", "type": "recommended", "evidence": [ { "id": "F1SJB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJB9" } ] } ], "protein_names": [ { "name": "hyaluronoglucosaminidase", "type": "recommended", "evidence": [ { "id": "F1SJB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJB9/entry#names_and_taxonomy" } ] }, { "name": "3.2.1.35", "type": "synonym", "evidence": [ { "id": "F1SJB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJB9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJB9", "url": "https://www.uniprot.org/uniprotkb/F1SJB9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CEMIP2", "url": "https://www.uniprot.org/uniprotkb/F1SJB9", "locus": { "chromosome": "1", "start_pos": 224960875, "end_pos": 225042308, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024257", "url": "https://www.ensembl.org/id/ENSSSCG00000024257" } ] } } ], "crossref": [ { "id": "ENSSSCG00000024257", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024257", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13938", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13938", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR011050", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011050", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019316", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019316", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039473", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039473", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055400", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055400", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055401", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055401", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15535", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15535", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15535:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15535:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10162", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10162", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15711", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15711", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24605", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24605", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24606", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24606", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ACI4", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0SB13", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SB13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0SB13-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SB13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJB9", "url": "https://www.uniprot.org/uniprotkb/F1SJB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJB9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJB9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRATDSRGHPPAFLQPQNGSSHRSSGYVPGKVVPLRPPPPPKSQASAKFTSIRQEARATFAFSSEEQQAQRESQKQKRHKNTFICFAITSFSFFVALAVILGISSKYAPDENCPDQNPRLRNWDPGQDSTKQVVIKEGDMFRLTSDATVNSIVIQDGGLLVFGDNKDGSRNITLRTRYILIKDGGALHIGAEKCRYKSKVTIALYGKSDEGESMPTFGKKFIGVEAGGTLELHGAQKTSWTLLVRTLHASGLTFGSYAFEKDFHRGLNVRVIDQDTAKILEIERFDTHEYHNESRRLQEFLRVQSPGRIVAIAVGDSAAKSLLQGTIQMIQNRLGSKLIQGLGYRQAWALVGVIDGGSISCNESVRNYENHSSGGKALAQREFYTVDGQKFSVTAYSEWIEGVSLSGFRVEVVDGVKLHLLDDVSSWKPGDQIVVASTDYSMYQAEEFTLLPCPECSRFQVKVKETPQFLHMGEIVDGVDMRAEVGILTRNVVIRGEMEEACYAENQCQFFDYDTFGGHVMIKKNFTSVHLSYVELKHMGQQHLGRYPIHFHLCGDVDYKGGYRHAAFVDGLSIHHSFSRCITVHGTNGLLIKDTIGFDTLGHCFFLEDGIEQRNTLFHNLGLLTKPGTLLPTDRNNSMCTTMREKVFGNYVPVPATDCMAVSTFWIAHPNNNLINNAAAGSQDAGIWYLFHKEPTGESSGLQLLAKPELTPLGIFYNNRVHSNFKAGLFIDKGVKTTNASAADPREYLCLDNSARFRPHQDADPEKPRVAALIDRLIAFKNNDNGAWVRGGDVVVQNSAFSDNGIGLTFASDGSFPSDEGSSQEVSESLFVGESTNYGFQGGQNKYVGTGGVDQKPRTLPRNRTFPIRGFQIYDGPIHLTRCTFKKYVPTPDRYTSAIGFLMKNSWQITPRNNISLVKFGPHVSLNVFFGKPGPWFEDCELDGDKNSIFHDVDGSVTGYKDAYVGRIDNYLIRHPSCVNVTKWNAVVCSGNYAQVYVQTWSTQNLTMTITRDEYPAYPMVLRGINQKATFPQYQPVIMLEKGYTIHWNGPAPRTAFLYLINFNKNDWIRVGLCYPSNTSFQVTFGFLQRHNGSLSKMEDYEPVHSLEELQRKQSERKFYFDSSTGLLFLYLKAKSHRDGHSYCSSQGCERVKIQATTDSKDISNCMAKAYPRYYRKPSVLKPMPSMLKGPCQGCGTRQVVFTSDPHKSYLPVQFWSPSQAQTQNGDLSVISINGTNFTFQGAGIFLLIVDACSVPFCLMGKKLFSLKDASRMEEYFKTGIPPSTIFLGFSGNFKPSWTKLFTSPAGQGLGLLEQFIPLQLDEYGCRRAGTVRRRDLELLKQTSKAH", "length": 1347, "header": "tr|F1SJB9-1|F1SJB9_PIG Isoform 1 of hyaluronoglucosaminidase OS=Sus scrofa OX=9823 GN=CEMIP2 PE=1 SV=5 CANONICAL=F1SJB9-1" }, "isoforms": [ { "isoform_ac": "A0A287ACI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJB9/entry#A0A287ACI4-1", "sequence": { "sequence": "MRATDSRGHPPAFLQPQNGSSHRSSGYVPGKVVPLRPPPPPKSQASAKFTSIRQEARATFAFSSEEQQAQRESQKQKRHKNTFICFAITSFSFFVALAVILGISSKYAPDENCPDQNPRLRNWDPGQDSTKQVVIKEGDMFRLTSDATVNSIVIQDGGLLVFGDNKDGSRNITLRTRYILIKDGGALHIGAEKCRYKSKVTIALYGKSDEGESMPTFGKKFIGVEAGGTLELHGAQKTSWTLLVRTLHASGLTFGSYAFEKDFHRGLNVRVIDQDTAKILEIERFDTHEYHNESRRLQEFLRVQSPGRIVAIAVGDSAAKSLLQGTIQMIQNRLGSKLIQGLGYRQAWALVGVIDGGSISCNESVRNYENHSSGGKALAQREFYTVDGQKFSVTAYSEWIEETPQFLHMGEIVDGVDMRAEVGILTRNVVIRGEMEEACYAENQCQFFDYDTFGGHVMIKKNFTSVHLSYVELKHMGQQHLGRYPIHFHLCGDVDYKGGYRHAAFVDGLSIHHSFSRCITVHGTNGLLIKDTIGFDTLGHCFFLEDGIEQRNTLFHNLGLLTKPGTLLPTDRNNSMCTTMREKVFGNYVPVPATDCMAVSTFWIAHPNNNLINNAAAGSQDAGIWYLFHKEPTGESSGLQLLAKPELTPLGIFYNNRVHSNFKAGLFIDKGVKTTNASAADPREYLCLDNSARFRPHQDADPEKPRVAALIDRLIAFKNNDNGAWVRGGDVVVQNSAFSDNGIGLTFASDGSFPSDEGSSQEVSESLFVGESTNYGFQGGQNKYVGTGGVDQKPRTLPRNRTFPIRGFQIYDGPIHLTRCTFKKYVPTPDRYTSAIGFLMKNSWQITPRNNISLVKFGPHVSLNVFFGKPGPWFEDCELDGDKNSIFHDVDGSVTGYKDAYVGRIDNYLIRHPSCVNVTKWNAVVCSGNYAQVYVQTWSTQNLTMTITRDEYPAYPMVLRGINQKATFPQYQPVIMLEKGYTIHWNGPAPRTAFLYLINFNKNDWIRVGLCYPSNTSFQVTFGFLQRHNGSLSKMEDYEPVHSLEELQRKQSERKFYFDSSTGLLFLYLKAKSHRDGHSYCSSQGCERVKIQATTDSKDISNCMAKAYPRYYRKPSVLKPMPSMLKGPCQGCGTRQVVFTSDPHKSYLPVQFWSPSQAQTQNGDLSVISINGTNFTFQGAGIFLLIVDACSVPFCLMGKKLFSLKDASRMEEYFKTGIPPRSVVLLSTRGEIAQFNISDSLVPLGLAKPAHLYNNGSTIFLGFSGNFKPSWTKLFTSPAGQGLGLLEQFIPLQLDEYGCRRAGTVRRRDLELLKQTSKAH", "length": 1320, "header": "tr|A0A287ACI4-1|F1SJB9_PIG Computationally mapped isoform of hyaluronoglucosaminidase OS=Sus scrofa OX=9823 GN=CEMIP2 PE=1 SV=2 CANONICAL=F1SJB9-1" }, "locus": { "chromosome": "1", "start_pos": 225024448, "end_pos": 224962699, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049032.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049032.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041681.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041681.2" } ] } }, { "isoform_ac": "A0A8D0SB13-1", "url": "https://www.uniprot.org/uniprotkb/F1SJB9/entry#A0A8D0SB13-1", "sequence": { "sequence": "MRATDSRGHPPAFLQPQNGSSHRSSGYVPGKVVPLRPPPPPKSQASAKFTSIRQEARATFAFSSEEQQAQRESQKQKRHKNTFICFAITSFSFFVALAVILGISSKYAPDENCPDQNPRLRNWDPGQDSTKQVVIKEGDMFRLTSDATVNSIVIQDGGLLVFGDNKDGSRNITLRTRYILIKDGGALHIGAEKCRYKSKVTIALYGKSDEGESMPTFGKKFIGVEAGGTLELHGAQKTSWTLLVRTLHASGLTFGSYAFEKDFHRGLNVRVIDQDTAKILEIERFDTHEYHNESRRLQEFLRVQSPGRIVAIAVGDSAAKSLLQGTIQMIQNRLGSKLIQGLGYRQAWALVGVIDGGSISCNESVRNYENHSSGGKALAQREFYTVDGQKFSVTAYSEWIEGVSLSGFRVEVVDGVKLHLLDDVSSWKPGDQIVVASTDYSMYQAEEFTLLPCPECSRFQVKVKETPQFLHMGEIVDGVDMRAEVGILTRNVVIRGEMEEACYAENQCQFFDYDTFGGHVMIKKNFTSVHLSYVELKHMGQQHLGRYPIHFHLCGDVDYKGGYRHAAFVDGLSIHHSFSRCITVHGTNGLLIKDTIGFDTLGHCFFLEDGIEQRNTLFHNLGLLTKPGTLLPTDRNNSMCTTMREKVFGNYVPVPATDCMAVSTFWIAHPNNNLINNAAAGSQDAGIWYLFHKEPTGESSGLQLLAKPELTPLGIFYNNRVHSNFKAGLFIDKGVKTTNASAADPREYLCLDNSARFRPHQDADPEKPRVAALIDRLIAFKNNDNGAWVRGGDVVVQNSAFSDNGIGLTFASDGSFPSDEGSSQEVSESLFVGESTNYGFQGGQNKYVGTGGVDQKPRTLPRNRTFPIRGFQIYDGPIHLTRCTFKKYVPTPDRYTSAIGFLMKNSWQITPRNNISLVKFGPHVSLNVFFGKPGPWFEDCELDGDKNSIFHDVDGSVTGYKDAYVGRIDNYLIRHPSCVNVTKWNAVVCSGNYAQVYVQTWSTQNLTMTITRDEYPAYPMVLRGINQKATFPQYQPVIMLEKGYTIHWNGPAPRTAFLYLINFNKNDWIRVGLCYPSNTSFQVTFGFLQRHNGSLSKMEDYEPVHSLEELQRKQSERKFYFDSSTGLLFLYLKAKSHRDGHSYCSSQGCERVKIQATTDSKDISNCMAKAYPRYYRKPSVLKPMPSMLKGPCQGCGTRQVVFTSDPHKSYLPVQFWSPSQAQTQNGDLSVISENYIWNKGDEAGWLL", "length": 1247, "header": "tr|A0A8D0SB13-1|F1SJB9_PIG Computationally mapped isoform of hyaluronoglucosaminidase OS=Sus scrofa OX=9823 GN=CEMIP2 PE=1 SV=1 CANONICAL=F1SJB9-1" }, "locus": { "chromosome": "1", "start_pos": 225024448, "end_pos": 224966145, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098238.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098238.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080728.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080728.1" } ] } }, { "isoform_ac": "F1SJB9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJB9/entry#F1SJB9-1", "sequence": { "sequence": "MRATDSRGHPPAFLQPQNGSSHRSSGYVPGKVVPLRPPPPPKSQASAKFTSIRQEARATFAFSSEEQQAQRESQKQKRHKNTFICFAITSFSFFVALAVILGISSKYAPDENCPDQNPRLRNWDPGQDSTKQVVIKEGDMFRLTSDATVNSIVIQDGGLLVFGDNKDGSRNITLRTRYILIKDGGALHIGAEKCRYKSKVTIALYGKSDEGESMPTFGKKFIGVEAGGTLELHGAQKTSWTLLVRTLHASGLTFGSYAFEKDFHRGLNVRVIDQDTAKILEIERFDTHEYHNESRRLQEFLRVQSPGRIVAIAVGDSAAKSLLQGTIQMIQNRLGSKLIQGLGYRQAWALVGVIDGGSISCNESVRNYENHSSGGKALAQREFYTVDGQKFSVTAYSEWIEGVSLSGFRVEVVDGVKLHLLDDVSSWKPGDQIVVASTDYSMYQAEEFTLLPCPECSRFQVKVKETPQFLHMGEIVDGVDMRAEVGILTRNVVIRGEMEEACYAENQCQFFDYDTFGGHVMIKKNFTSVHLSYVELKHMGQQHLGRYPIHFHLCGDVDYKGGYRHAAFVDGLSIHHSFSRCITVHGTNGLLIKDTIGFDTLGHCFFLEDGIEQRNTLFHNLGLLTKPGTLLPTDRNNSMCTTMREKVFGNYVPVPATDCMAVSTFWIAHPNNNLINNAAAGSQDAGIWYLFHKEPTGESSGLQLLAKPELTPLGIFYNNRVHSNFKAGLFIDKGVKTTNASAADPREYLCLDNSARFRPHQDADPEKPRVAALIDRLIAFKNNDNGAWVRGGDVVVQNSAFSDNGIGLTFASDGSFPSDEGSSQEVSESLFVGESTNYGFQGGQNKYVGTGGVDQKPRTLPRNRTFPIRGFQIYDGPIHLTRCTFKKYVPTPDRYTSAIGFLMKNSWQITPRNNISLVKFGPHVSLNVFFGKPGPWFEDCELDGDKNSIFHDVDGSVTGYKDAYVGRIDNYLIRHPSCVNVTKWNAVVCSGNYAQVYVQTWSTQNLTMTITRDEYPAYPMVLRGINQKATFPQYQPVIMLEKGYTIHWNGPAPRTAFLYLINFNKNDWIRVGLCYPSNTSFQVTFGFLQRHNGSLSKMEDYEPVHSLEELQRKQSERKFYFDSSTGLLFLYLKAKSHRDGHSYCSSQGCERVKIQATTDSKDISNCMAKAYPRYYRKPSVLKPMPSMLKGPCQGCGTRQVVFTSDPHKSYLPVQFWSPSQAQTQNGDLSVISINGTNFTFQGAGIFLLIVDACSVPFCLMGKKLFSLKDASRMEEYFKTGIPPSTIFLGFSGNFKPSWTKLFTSPAGQGLGLLEQFIPLQLDEYGCRRAGTVRRRDLELLKQTSKAH", "length": 1347, "header": "tr|F1SJB9-1|F1SJB9_PIG Isoform 1 of hyaluronoglucosaminidase OS=Sus scrofa OX=9823 GN=CEMIP2 PE=1 SV=5 CANONICAL=F1SJB9-1" }, "locus": { "chromosome": "1", "start_pos": 225024448, "end_pos": 224962699, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005795.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005795.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005651.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005651.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0SB13", "url": "https://www.uniprot.org/uniprotkb/A0A8D0SB13" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJB9", "url": "https://www.uniprot.org/uniprotkb/F1SJB9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1SJB9", "url": "https://www.uniprot.org/uniprotkb/F1SJB9" } ], "pmid": "" }, { "name": "hyalurononglucosaminidase activity", "id": "GO:0004415", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004415", "evidence": [ { "database": "UniProtKB", "id": "F1SJB9", "url": "https://www.uniprot.org/uniprotkb/F1SJB9" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SJB9", "url": "https://www.uniprot.org/uniprotkb/F1SJB9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "hyaluronan catabolic process", "id": "GO:0030214", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030214", "evidence": [ { "database": "UniProtKB", "id": "F1SJB9", "url": "https://www.uniprot.org/uniprotkb/F1SJB9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1005, "end_pos": 1007, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1078, "end_pos": 1080, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1092, "end_pos": 1094, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1234, "end_pos": 1236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1237, "end_pos": 1239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 525, "end_pos": 527, "annotation": "n_glycosylation_sequon" }, { "start_pos": 636, "end_pos": 638, "annotation": "n_glycosylation_sequon" }, { "start_pos": 739, "end_pos": 741, "annotation": "n_glycosylation_sequon" }, { "start_pos": 863, "end_pos": 865, "annotation": "n_glycosylation_sequon" }, { "start_pos": 914, "end_pos": 916, "annotation": "n_glycosylation_sequon" }, { "start_pos": 980, "end_pos": 982, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJB9" }, { "id": "PS51484", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51484" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G8", "eco_id": "ECO_0000259", "start_pos": 121, "end_pos": 245, "start_aa": "Arg", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1005, "end_pos": 1007 }, { "start_pos": 1078, "end_pos": 1080 }, { "start_pos": 1092, "end_pos": 1094 }, { "start_pos": 1234, "end_pos": 1236 }, { "start_pos": 1237, "end_pos": 1239 }, { "start_pos": 171, "end_pos": 173 }, { "start_pos": 18, "end_pos": 20 }, { "start_pos": 292, "end_pos": 294 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 370, "end_pos": 372 }, { "start_pos": 525, "end_pos": 527 }, { "start_pos": 636, "end_pos": 638 }, { "start_pos": 739, "end_pos": 741 }, { "start_pos": 863, "end_pos": 865 }, { "start_pos": 914, "end_pos": 916 }, { "start_pos": 980, "end_pos": 982 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ87-1", "uniprot_ac": "F1SJ87", "uniprot_id": "F1SJ87_PIG", "mass": { "chemical_mass": 69761.0, "monoisotopic_mass": 69761.0 }, "refseq": { "ac": "XP_001929222", "name": "leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929222" }, "gene_names": [ { "name": "LINGO1", "type": "recommended", "evidence": [ { "id": "F1SJ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ87" } ] }, { "name": "LINGO1", "type": "synonym", "evidence": [ { "id": "XP_001929222", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929222" } ] } ], "protein_names": [ { "name": "Leucine rich repeat and Ig domain containing 1", "type": "synonym", "evidence": [ { "id": "F1SJ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ87/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001929222", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929222" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ87", "url": "https://www.uniprot.org/uniprotkb/F1SJ87" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LINGO1", "url": "https://www.uniprot.org/uniprotkb/F1SJ87", "locus": { "chromosome": "7", "start_pos": 57684589, "end_pos": 57890126, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001872", "url": "https://www.ensembl.org/id/ENSSSCG00000001872" } ] } } ], "crossref": [ { "id": "F1SJ87", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ87", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001872", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001872", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20969", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20969", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155465", "url": "https://www.ncbi.nlm.nih.gov/gene/100155465", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155465", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155465", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ACU9", "url": "https://www.orthodb.org/?gene=A0A287ACU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SJ87", "url": "https://www.orthodb.org/?gene=F1SJ87", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF178", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF178", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193634", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193634", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001929222", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929222", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ACU9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ACU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ACU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ87", "url": "https://www.uniprot.org/uniprotkb/F1SJ87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ87-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQVSERMLAGGAKSVPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI", "length": 620, "header": "tr|F1SJ87-1|F1SJ87_PIG Isoform 1 of Leucine rich repeat and Ig domain containing 1 OS=Sus scrofa OX=9823 GN=LINGO1 PE=1 SV=3 CANONICAL=F1SJ87-1" }, "isoforms": [ { "isoform_ac": "A0A287ACU9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ87/entry#A0A287ACU9-1", "sequence": { "sequence": "MLAGGAKSVPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI", "length": 614, "header": "tr|A0A287ACU9-1|F1SJ87_PIG Computationally mapped isoform of Leucine rich repeat and Ig domain containing 1 OS=Sus scrofa OX=9823 GN=LINGO1 PE=1 SV=1 CANONICAL=F1SJ87-1" }, "locus": { "chromosome": "7", "start_pos": 57687449, "end_pos": 57685608, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054117.1", "url": "https://www.ensembl.org/id/ENSSSCT00000054117.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041802.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041802.1" } ] } }, { "isoform_ac": "F1SJ87-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ87/entry#F1SJ87-1", "sequence": { "sequence": "MQVSERMLAGGAKSVPSPLLACWQPILLLVLGSVLSGSATGCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYSPDWPHQPNKTFAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYVPRKSDAGISSADAPRKFNMKMI", "length": 620, "header": "tr|F1SJ87-1|F1SJ87_PIG Isoform 1 of Leucine rich repeat and Ig domain containing 1 OS=Sus scrofa OX=9823 GN=LINGO1 PE=1 SV=3 CANONICAL=F1SJ87-1" }, "locus": { "chromosome": "7", "start_pos": 57702155, "end_pos": 57685608, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002097.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002097.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002047.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002047.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ACU9", "url": "https://www.uniprot.org/uniprotkb/A0A287ACU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155465", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155465", "resource": "KEGG Pathway" }, { "id": "R-SSC-193634", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193634", "resource": "Reactome", "description": "Axonal growth inhibition (RHOA activation)" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ87", "url": "https://www.uniprot.org/uniprotkb/F1SJ87" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "epidermal growth factor receptor binding", "id": "GO:0005154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005154", "evidence": [ { "database": "UniProtKB", "id": "F1SJ87", "url": "https://www.uniprot.org/uniprotkb/F1SJ87" } ], "pmid": "" }, { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1SJ87", "url": "https://www.uniprot.org/uniprotkb/F1SJ87" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "neuron development", "id": "GO:0048666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048666", "evidence": [ { "database": "UniProtKB", "id": "F1SJ87", "url": "https://www.uniprot.org/uniprotkb/F1SJ87" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 492, "end_pos": 494, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" }, { "start_pos": 526, "end_pos": 528, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ87-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 620, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ87-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ87" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ87" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 411, "end_pos": 513, "start_aa": "Pro", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 144, "end_pos": 146 }, { "start_pos": 202, "end_pos": 204 }, { "start_pos": 264, "end_pos": 266 }, { "start_pos": 274, "end_pos": 276 }, { "start_pos": 293, "end_pos": 295 }, { "start_pos": 341, "end_pos": 343 }, { "start_pos": 492, "end_pos": 494 }, { "start_pos": 505, "end_pos": 507 }, { "start_pos": 526, "end_pos": 528 }, { "start_pos": 542, "end_pos": 544 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPB0-1", "uniprot_ac": "F1SPB0", "uniprot_id": "F1SPB0_PIG", "mass": { "chemical_mass": 46120.0, "monoisotopic_mass": 46120.0 }, "refseq": { "ac": "XP_020925984", "name": "protein O-glucosyltransferase 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925984" }, "gene_names": [ { "name": "POGLUT1", "type": "recommended", "evidence": [ { "id": "F1SPB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ] }, { "name": "POGLUT1", "type": "synonym", "evidence": [ { "id": "XP_020925984", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925984" } ] } ], "protein_names": [ { "name": "Protein O-glucosyltransferase 1", "type": "synonym", "evidence": [ { "id": "F1SPB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPB0/entry#names_and_taxonomy" } ] }, { "name": "protein O-glucosyltransferase 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020925984", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925984" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POGLUT1", "url": "https://www.uniprot.org/uniprotkb/F1SPB0", "locus": { "chromosome": "13", "start_pos": 140764216, "end_pos": 140793596, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032313", "url": "https://www.ensembl.org/id/ENSSSCG00000032313" } ] } } ], "crossref": [ { "id": "ENSSSCG00000032313", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032313", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525611", "url": "https://www.ncbi.nlm.nih.gov/gene/100525611", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525611", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525611", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EDDCMFP", "url": "https://omabrowser.org/oma/group/EDDCMFP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPB0", "url": "https://www.orthodb.org/?gene=F1SPB0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12203", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12203", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12203:SF35", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12203:SF35", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020925984", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925984", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AER2", "url": "https://www.uniprot.org/uniprotkb/A0A287AER2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AER2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AER2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPB0-1", "url": "https://www.uniprot.org/uniprotkb/F1SPB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERWALSHLRLWLLLLLLLPVPGRQKESGSKWKVLIDQINRALENYEPCSSQNCSCYHGVIEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEVMGRLPDMEMVINVRDYPQVPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQWPWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQEIAERGSQFILNHLQMDDITCYWENLLTEYSKFLSYNVTRRKGYDQIIPKILKTEL", "length": 392, "header": "tr|F1SPB0-1|F1SPB0_PIG Isoform 1 of Protein O-glucosyltransferase 1 OS=Sus scrofa OX=9823 GN=POGLUT1 PE=1 SV=2 CANONICAL=F1SPB0-1" }, "isoforms": [ { "isoform_ac": "A0A287AER2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPB0/entry#A0A287AER2-1", "sequence": { "sequence": "MERWALSHLRLWLLLLLLLPVPGRQKESGSKWKVLIDQINRALENYEPCSSQNCSCYHGVIEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEVMGRLPDMEMVINVRDYPQVPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLLKTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQEIAERGSQFILNHLQMDDITCYWENLLTEYSKFLSYNVTRRKGYDQIIPKILKTEL", "length": 372, "header": "tr|A0A287AER2-1|F1SPB0_PIG Computationally mapped isoform of Protein O-glucosyltransferase 1 OS=Sus scrofa OX=9823 GN=POGLUT1 PE=1 SV=1 CANONICAL=F1SPB0-1" }, "locus": { "chromosome": "13", "start_pos": 140793532, "end_pos": 140765916, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041017.2", "url": "https://www.ensembl.org/id/ENSSSCT00000041017.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042328.1", "url": "https://www.ensembl.org/id/ENSSSCP00000042328.1" } ] } }, { "isoform_ac": "F1SPB0-1", "url": "https://www.uniprot.org/uniprotkb/F1SPB0/entry#F1SPB0-1", "sequence": { "sequence": "MERWALSHLRLWLLLLLLLPVPGRQKESGSKWKVLIDQINRALENYEPCSSQNCSCYHGVIEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEVMGRLPDMEMVINVRDYPQVPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLLKSAAQWPWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMQDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGNEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQEIAERGSQFILNHLQMDDITCYWENLLTEYSKFLSYNVTRRKGYDQIIPKILKTEL", "length": 392, "header": "tr|F1SPB0-1|F1SPB0_PIG Isoform 1 of Protein O-glucosyltransferase 1 OS=Sus scrofa OX=9823 GN=POGLUT1 PE=1 SV=2 CANONICAL=F1SPB0-1" }, "locus": { "chromosome": "13", "start_pos": 140793532, "end_pos": 140765916, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013019.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013019.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012677.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012677.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AER2", "url": "https://www.uniprot.org/uniprotkb/A0A287AER2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525611", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525611", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XUP7-1", "protein_name": "Protein O-glucosyltransferase 1", "gene_name": "POGLUT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MERAALALWALVAAAAVWPSGAAAGGPADAKWKTITDQINRAVEVYKPCVKENCSCHQSVWKQDLAPFRSGISKETISDVVSRKLGTHYQIIKNKLYREHDCMFPARCSGVEHFIHGIINRLPDMEMVINVRDYPQVPKWMKPIIPVFSFSKTAEYNDIMYPAWTFWEGGPAVWPIYPTGLGRWDLMREDLRRSAEKWPWKKKISKGYFRGSSPPGKASSEVQMEGFVTLALFVTEKENELEITVKKKKNLLFFNILFKDTLGKPPAKEIPLVDHCKYKYLFNFRGVAASFRLKHLFLCGSLVFHVGEEWLEFFYQQLKPWVHYIPVKSDLSDVRELLQFAKENDNIAQEIAERGRQFITEHLQMEDVSCYWEHLLSEYSQTLTYKVKRRKNYNEITSEWLKTEL", "length": 405 }, "evidence": [ { "id": "F1SPB0", "url": "https://omabrowser.org/oma/group/F1SPB0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3V9D0-1", "protein_name": "Protein O-glucosyltransferase 1", "gene_name": "Poglut1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERLSGCRLRPWMLLLLLFPVQGRQKDSGSKWKVFIDQINRALENYEPCSSQNCSCYHGVIEEDLTPFRGGISRKMMAEVVRRRLGTHYQIIKHRLFREDDCMFPSRCSGVEHFILEVIRRLPDMEMVINVRDYPQVPKWMEPTIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPLYPTGLGRWDLFREDLLRSAAQWPWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKDVHLIDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGDEWVEFFYPQLKPWVHYIPVKTDLSDVQELLQFVKANDDLAQEIAKRGSQFIINHLQMDDITCYWENLLTEYSKFLSYNVTRRKDYYQIIPRRLKTEL", "length": 392 }, "evidence": [ { "id": "F1SPB0", "url": "https://omabrowser.org/oma/group/F1SPB0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5E9Q1-1", "protein_name": "Protein O-glucosyltransferase 1", "gene_name": "POGLUT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MELGVSSQLWLWLLLLLLPPVPGREKESGSKWKVFIDQINRALENYEPCSSPNCSCYHGVIEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLYRESDCMFPSRCSGVEHFILEVIGRLPDMEMVINVRDYPQVPKWMEPAIPIFSFSKTLEYHDIMYPAWTFWEGGPAVWPIYPMGLGRWDLFREDLVRSAAQWPWKKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGDEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDVAQEIAERGSQFILNHLKMDDITCYWENLLTEYSKFLSYNVTRRKGYDQIVPKILKIEL", "length": 392 }, "evidence": [ { "id": "F1SPB0", "url": "https://omabrowser.org/oma/group/F1SPB0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BYB9-1", "protein_name": "Protein O-glucosyltransferase 1", "gene_name": "Poglut1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERRAGSRLRAWMLLLLLCPVQGRQKDSGSKWKVFLDQINRALENYEPCSSQNCSCYHGVIEEDLTPFRGGISRKMMAEVVRRKLGTHYQIIKNRLFREDDCMFPSRCSGVEHFILEVIHRLPDMEMVINVRDYPQVPKWMEPTIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPLYPTGLGRWDLFREDLLRSAAQWPWEKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKDVHLIDHCKYRYLFNFRGVAASFRFKHLFLCGSLVFHVGDEWVEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDIAQEIAKRGSQFIINHLQMDDITCYWENLLTDYSKFLSYNVTRRKDYYQIVPRRLKTEL", "length": 392 }, "evidence": [ { "id": "F1SPB0", "url": "https://omabrowser.org/oma/group/F1SPB0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NBL1-1", "protein_name": "Protein O-glucosyltransferase 1", "gene_name": "POGLUT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEWWASSPLRLWLLLFLLPSAQGRQKESGSKWKVFIDQINRSLENYEPCSSQNCSCYHGVIEEDLTPFRGGISRKMMAEVVRRKLGTHYQITKNRLYRENDCMFPSRCSGVEHFILEVIGRLPDMEMVINVRDYPQVPKWMEPAIPVFSFSKTSEYHDIMYPAWTFWEGGPAVWPIYPTGLGRWDLFREDLVRSAAQWPWKKKNSTAYFRGSRTSPERDPLILLSRKNPKLVDAEYTKNQAWKSMKDTLGKPAAKDVHLVDHCKYKYLFNFRGVAASFRFKHLFLCGSLVFHVGDEWLEFFYPQLKPWVHYIPVKTDLSNVQELLQFVKANDDVAQEIAERGSQFIRNHLQMDDITCYWENLLSEYSKFLSYNVTRRKGYDQIIPKMLKTEL", "length": 392 }, "evidence": [ { "id": "F1SPB0", "url": "https://omabrowser.org/oma/group/F1SPB0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8T045-1", "protein_name": "O-glucosyltransferase rumi", "gene_name": "rumi", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLINHLIVVLLISLVGTGGAEDDGLCSADQKSCAQSEPDQINEDEFSFKIRRQIEKANADYKPCSSDPQDSDCSCHANVLKRDLAPYKSTGVTRQMIESSARYGTKYKIYGHRLYRDANCMFPARCEGIEHFLLPLVATLPDMDLIINTRDYPQLNAAWGNAAGGPVFSFSKTKEYRDIMYPAWTFWAGGPATKLHPRGIGRWDQMREKLEKRAAAIPWSQKRSLGFFRGSRTSDERDSLILLSRRNPELVEAQYTKNQGWKSPKDTLDAPAADEVSFEDHCKYKYLFNFRGVAASFRLKHLFLCKSLVFHVGDEWQEFFYDQLKPWVHYVPLKSYPSQQEYEHILSFFKKNDALAQEIAQRGYDFIWEHLRMKDIKCYWRKLLKRYVKLLQYEVKPEDQLIYIGPKKDEL", "length": 411 }, "evidence": [ { "id": "F1SPB0", "url": "https://omabrowser.org/oma/group/F1SPB0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9LML4-1", "protein_name": "O-glucosyltransferase rumi-like protein (DUF821)", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGLRLRLRLPHKSSPRSPSYLLLCVLALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPWHIFPRKSFSAATKHSQAYRILQCSYFSCPYKAVVQPKSLHSESGSGRQTHQPQCPDFFRWIHRDLEPWAKTGVTKEHVKRAKANAAFRVVILSGKLYVDLYYACVQSRMMFTIWGILQLLTKYPGMVPDVDMMFDCMDKPIINQTEYQSFPVPLFRYCTNEAHLDIPFPDWSFWGWSETNLRPWEEEFGDIKQGSRRRSWYNKQPRAYWKGNPDVVSPIRLELMKCNHSRLWGAQIMRQDWAEEAKGGFEQSKLSNQCNHRYKIYAEGYAWSVSLKYILSCGSMTLIISPEYEDFFSRGLLPKENYWPISPTDLCRSIKYAVDWGNSNPSEAETIGKRGQGYMESLSMNRVYDYMFHLITEYSKLQKFKPEKPASANEVCAGSLLCIAEQKERELLERSRVVPSLDQPCKFPVEDRNRLEWLIQQKNKTIENVRYMEMTRTQRGSK", "length": 507 }, "evidence": [ { "id": "F1SPB0", "url": "https://omabrowser.org/oma/group/F1SPB0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transferase activity", "id": "GO:0016740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016740", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" }, { "name": "UDP-xylosyltransferase activity", "id": "GO:0035252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035252", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" }, { "name": "UDP-glucosyltransferase activity", "id": "GO:0035251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035251", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of gastrulation", "id": "GO:0010470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010470", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" }, { "name": "protein O-linked glycosylation", "id": "GO:0006493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006493", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" }, { "name": "positive regulation of Notch signaling pathway", "id": "GO:0045747", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045747", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" }, { "name": "muscle tissue development", "id": "GO:0060537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060537", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" }, { "name": "protein O-linked glycosylation via glucose", "id": "GO:0180059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0180059", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" }, { "name": "protein O-linked glycosylation via xylose", "id": "GO:0180064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0180064", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "F1SPB0", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPB0" }, { "id": "SM00672", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00672" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl transferase CAP10", "eco_id": "ECO_0000259", "start_pos": 121, "end_pos": 373, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00002CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00012MO", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G00013MO", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G00014MO", "type": "Glycosphingolipid", "subtype": "Arthro series" }, { "glytoucan_ac": "G00015MO", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G00024MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00025AJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00025MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00034WH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00038JC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00045DM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00049MO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00050MO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00056SP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00059MO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00060MO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00061MO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G00064MO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G00069MO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00070MO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00071MO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00072MO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00122QX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00141ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00152LK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00157WT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00209ZX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00227ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00252UK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00274WK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00282XO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00288QM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G00298LF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00333ZL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00336XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00370EI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00395FS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00402KT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00407UJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00459HM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00461ZN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00483IX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00506NQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00510MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00521FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00557UC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00572SI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00580XP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00595HP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00601UG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00610TG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00623OI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00644FU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00647RA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00667RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00673KJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00679VV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00688XN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00696YZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00709ZM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00736XN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00761MZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00761OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00774OZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00786XQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00787AF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00788HS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00802AJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00845KS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00849VB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00851XQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00866EV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00899CT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00936LV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00969CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00974QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00977CB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01019HS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01055IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01055WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01139KZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01144AC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01164GG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01179OJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01181PE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01191NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01200BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01208OM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01232PN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01237HZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01260KW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01269WV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01271OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01278CM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01281PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01284FH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01296LJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01329EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01356OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01356YS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01357PS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01364TQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01369KU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01383BR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01402AT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01406YA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01431VR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01449MW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01463ZT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01474RK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01485HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01513UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01536DI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01538EI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01578NU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01580PZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01599DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01629YL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01645SV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01650PH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01659IT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01659VO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01676BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01690DX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01708UF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01712EB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01714NT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01716PR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01725MM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01742MR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01767JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01768OD", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G01772JF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01799XU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01820WV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01824ZO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01864XR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01878VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01894QP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01927AO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01933LC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01954WK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01958WI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01987DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01999QR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02020RQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02026XF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02035MJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02038LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02045TO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02049RJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02065HZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02080UT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02131XU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02145PB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02146NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02149VR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02151KD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02162MZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02162RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02168MP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02175CF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02187VY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02188VP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02196YO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02259AO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02278OY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02332YO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02334IJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02363VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02374CE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02375DU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02402HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02429PO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02443FW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02456CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02463PA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02488CK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02497GP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02497RH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02509SJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02511KW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02519WN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02536XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02556BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02582KL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02599VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02600QJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02622JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02644GE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02657AK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02660UC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02691LI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02727GF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02776UX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02782UU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02784UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02809FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02813OU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02819MW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02825UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02862XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02885BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02891BL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02910KB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02913BN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02913GI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02934OV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02938HM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02946WF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02963KR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02986VV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03015NB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03057GB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03067VG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03074ZG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03081TH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03087RG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03098CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03105ES", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03106MF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03116ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03120VA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03144AG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03166CJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03237OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03243FN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03272BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03277YI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03286CY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03332JB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03333ZM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03361KC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03408WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03432RV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03457IA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03472XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03473OX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03479FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03487PR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03506YN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03525IQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03527VN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03530HJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03562FD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03564IA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03572II", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03577YH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03581TO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03593VH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03629LR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03668XO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03674DI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03678BK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03678VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03679EO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03700GP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03706BZ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G03728KZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03739GM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03756ZH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03767RW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03794CJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03795KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03805HR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03806TA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03819SO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03827BO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03828AM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03829ED", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03830VF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03862DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03871KV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03872XE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03873KF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03888GC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03903BD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03907HM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03919ED", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03951YI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03954KJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03955RC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03957WU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04002CA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04003YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04004CH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04015AP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04052HW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04062XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04084WX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04093XE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04100NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04111FM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04196SD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04203QS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04216XN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04230VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04256AW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04281RT", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G04291CU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04368AZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G04368OY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04417HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04422RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04433GV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G04435PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04436ET", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04445AU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04451KB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04462ZS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04479WW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04497XO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04537DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04542UN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G04543MP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04545VH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04550QS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04551HK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04557UT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04559RQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04563PI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04576PT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04596BJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04600CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04604GA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04610NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04610NL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04614QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04617VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04618ND", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04654VI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04663DE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04670CJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04676YO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04685DG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04700EY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04704LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04709FK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04715SK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04742WT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04748KA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04752CX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04811WK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G04812DZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G04857UT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04877HJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04880KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04883CA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04884NP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04889DO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04908YS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04910RR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04913RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04918QS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04922JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04947EI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04949TM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04966AC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04991CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05014UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05015ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05022UB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05030FI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05095BA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05098DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05136BT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05139FR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05148UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05152XR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05153MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05161OY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05164TT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05167LP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05198VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05200HG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05212BT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05212WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05243OL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05260KF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05270TA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05286OM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05287IT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05297EK", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G05315FT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05318SS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05336WP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05337KJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05353EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05357CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05372FR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G05372US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05384WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05425EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05463IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05492XH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05499YV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05507UE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05516TP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05539AN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05550JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05561CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05574JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05596LB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05615BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05626DT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05636TF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05674AL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05687VB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05708IP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05722XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05777RN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05809DB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05821SL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05829TG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05858FK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05884WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05892MC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05895IX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05914MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05920DM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05927ZE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05938OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05952XV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05979DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05982NK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06000DZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06007BJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06021WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06028TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06031DD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06040NU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06055JA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06056XE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06058DL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06109OV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06115IS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06141RV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06148DR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06149HH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06185JX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06192YL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06202RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06203XQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06210XB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06225DQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06239NA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06303JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06334DC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06351IA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06353XM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06402RX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06409UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06445NF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06446VC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06511XS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06557IC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06577HE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06583IY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06607HP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06616KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06619UQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06631LJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06655AV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06663AZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06706PA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06722GU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06723CY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06764KN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06778YR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06797BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06799HZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06809KV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06850AE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06850UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06851NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06873PC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06881DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06910HM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06924NS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06971VR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07008GA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07045AZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07062RV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07064QI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07071RD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07075ZE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07112RY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07136WT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07137JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07166FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07187JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07194UG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07214II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07227QC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07227YD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07251EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07280YM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07291XL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07292RD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07297KV", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G07311EV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07322TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07339TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07348OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07360YN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07372NH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07442BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07452NH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07462XS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07467EB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07492HB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07494AF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07517TD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07518YL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07521PP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07522UW", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G07533UM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07538NX", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G07549AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07566AO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07609AY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07613EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07614GN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07614RZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07615UU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07622PC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07626IW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07627PD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07634AZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07641UW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07646VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07655BD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07675OH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07706PG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07714MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07727AE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07729WS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07729YZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07741OQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07747UL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07761XR", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G07768GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07803AA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07822HH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07835SR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07843HL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07863BE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07879ZH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07895UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07902LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07903TD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07922PY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07943WF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07954EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07978HT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07992YV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08023FY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08033RH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08089AE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08091PP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08143BZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08149EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08172WN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08192DD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08231LD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08275ZY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08277FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08344GX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08354GM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08380SA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08431YY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08436NI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08536AN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08540DD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08551GM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G08564RB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08578PP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08585ZI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08595SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08640KF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08648UJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08649GN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08660ID", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G08662MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08672HQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08674CQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08711ZN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08719UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08723AU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08732TG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08738TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08775RW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08785FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08795GE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08796XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08801NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08835TC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08851AT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08855PJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08856EZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08861VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08870DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08879VK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08885DJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G08921QM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08937BW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09004CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09016VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09023OT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09028HV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09035TO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09036PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09045NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09046VD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09054LY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09054UX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09057MT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09062JA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09074CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09091PI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09143NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09165XB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09183JD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09194JX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09199FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09216IK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09226GE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09242UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09245VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09255MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09302XT", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G09308YS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09333VN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09336GJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09383LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09397NL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09415JG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09454VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09465EV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09480BB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09493AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09506OB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09529HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09533NV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09552LA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09576SL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09583ED", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09598KD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09610VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09658RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09662MS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09675VB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09676KV", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G09702XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09712ZH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09731UU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09741DV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09743JV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09745MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09761PB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09787WB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09799UN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09819VE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09846QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09858SO", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G09861HL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09921EA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09930HL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09947IM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09962WA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09966BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09983HE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09988DU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G10034LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10074JB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10112QT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10137XF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10138RZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10150ZC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10158SF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10162QE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10166SK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10173JY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10191TO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10259IA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10276AE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10287JP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10305ZP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10306UR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10315IJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10331BD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10331BX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10339TL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10358PB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10376VB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10377CG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10397ST", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10400OD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10404GJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G10422IZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10430NG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10438JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10451QA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10461TS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10463RS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10470LU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10479NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10484MA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10488WF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10503MP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10513GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10528MR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10534ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10543DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10561QV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10588AZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10608BJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10636ME", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10667BL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10689ZT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10703UH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10712FZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G10727PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10735NG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10767WF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10783VN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G10788ZQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10791ES", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10794OA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10816XY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10818SM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10820LV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G10830KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10839JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10853AV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10853BW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10861EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10890WT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10897SV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10905SW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10925HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10929MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10943MK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10965GL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10970DV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10974HJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G10977MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11035GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11051CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11106ST", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11109ZM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11118YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11161OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11163DF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11173HB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11175LY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11182SS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11260XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11260YM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11288PA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11301CP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11327SW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11353QQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11356UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11364SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11409DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11414RL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11417QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11427YY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11428LI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11429PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11452MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11473GW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11475AO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11485ID", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11501NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11510PY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11524CG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11547CN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11552SE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11554VY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11569NG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11587LZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11632NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11636EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11719PU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11745KF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11749PD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11753YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11756GA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11757WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11785PK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11787AF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11833QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11840SC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11842GF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11852IZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11858KN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11877SF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11879XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11881QR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11886AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11894VX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11915UT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11922GI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11923HZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11928TH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11931VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11943BP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11967GO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12008GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12014ZL", "type": "Glycosphingolipid", "subtype": "Arthro series" }, { "glytoucan_ac": "G12020FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12021WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12025NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12045LV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12059EB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12062TH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12069NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12076QW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G12126HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12132AZ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G12138DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12151DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12155KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12162GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12182VX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12195UC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12201XS", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G12237CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12262RK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12273JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12274ST", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12312QM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12314ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12317LD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12332SI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12362BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12364DQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12381AJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12393MQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12429VM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12440KU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12456QN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12458SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12460DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12460QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12472DC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12499UL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12507OZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12521ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12531OO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12539ND", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12557JV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12579EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12611EO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12611ZS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12615BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12615JD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12637NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12641WM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12687HO", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G12710KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12719IE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G12724ES", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12729CF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12770GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12777YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12848IK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12850MK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12876JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12876TR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12878ME", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12890EI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G12920XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12932IO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12945UV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12951CM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12956VH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12964YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12969XN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12978JL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12984CP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12986LA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13002FS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13021JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13025HR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13034PC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13038AO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13040AD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13051TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13058JI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13059GA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13063VO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13121ZV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13149YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13170EP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13177TU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13189BF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13205UX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13224CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13225OZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13247RE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13257ZV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13258LA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13294EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13295LH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13312HH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13327LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13334VF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13338YP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13362BC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13367QQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13401SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13411GM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13441AW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13445VO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13455RE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13456TU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13477JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13492NR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13543IR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13558UT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13585VS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13630UH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13636IT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13670FR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13677FP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13697BC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13732OQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13741YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13745WN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13748BP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G13764JW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13769XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13775EU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13776JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13782KB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13821ZP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13897SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13898TJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13910LY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13912IG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13923FW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13953AN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13961XZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13975CX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13978AP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13998ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14029LK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14037HH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14070SB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14091MR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14101YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14116CO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14121NG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14127JG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14128FN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14139BU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14139DE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14149FY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14153YV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14159WA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14172AX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14222AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14231QH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14245HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14252XR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14295FH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14326YE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14330IC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14338VK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14360BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14368ED", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14394HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14430JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14464IB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14484CB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14484TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14514RY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14543IY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14588LJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14589ZB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14596QX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14617GC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14622KK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14632UN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14633CL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14636AG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14636TF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14637KE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14638TS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14662SX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14675MA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14682DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14694LT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14727QK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14767HC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14768JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14769CB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14775OL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14781ZZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14784NA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14787DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14815EY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14817EI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14825CD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14825JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14849PR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14853GY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14857YN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14870CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14876IZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14879UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14885WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14948BQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14956YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14965WK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14969WO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14971YU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14974EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14994VQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14995JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14996VV", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G15021LG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15059WI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15066MY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15068EX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15080IH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15082FI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15091HJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G15158NE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15177HV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15178DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15193UK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15203IQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G15204GO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15211GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15216HY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G15232BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15257LR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15259PO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15301IS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15302GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15336XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15349PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15393GI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15399CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15402YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15403KF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15403UN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15410NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15471NJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15490PV", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G15493RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15513ZS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15528IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15541SE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15548CA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G15571PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15573DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15577GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15591ES", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15597AB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15605KR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15640IF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15640PW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15658UQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15694HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15704AX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15709CQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15710ZS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15721UI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15727EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15736PY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15762QT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15810CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15828ZC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15850HT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15868RK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15874WL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15876RF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G15880UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15923IB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15926EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15933JV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15934PK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15947DE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15948XY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15963OJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15982ZG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15998PL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16063EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16083MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16112BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16171JW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16182AN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16195MD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16207FW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16216TH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16247BY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16248NY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16255HD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16255WW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16265FN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16269RR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16274HY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16302TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16302WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16328WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16348WN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16356RY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16363CS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16409VA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16429YB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16438SA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16452YW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16473NN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16492FT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16495ZV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16496QP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16517GB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16541MU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16555DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16561MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16568BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16609AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16647VS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16673GG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16678EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16682LX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16684ZR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16691JE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16701GV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16708AQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16723SS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16730XN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16737DA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16744RC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16761OC", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G16766HB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16804NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16816TN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16818JN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16832RX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16845HS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16849CB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16854OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16881JR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16882OK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16900UB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16924DP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16938NB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16973RB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16974EB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16978WO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16982II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16999RL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17014SZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17021CS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17024KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17041CW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17067EZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17070GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17075TB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17077FL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17100OM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G17119OZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17124YW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17127JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17129OX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17133MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17139LF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17140YY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17143HG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17147FM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17179HJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17234QV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17238DO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17256NT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17259DV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17266KS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17330HJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17369OI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17399NA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17403EL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17405VF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17431VW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17450LT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17456OU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17458EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17468PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17471FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17472NN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17473XY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17480VD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17486KZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17486WU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17491OC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17506KG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17513EU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17520FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17530YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17539DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17557TG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17630DD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17654IH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17661PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17667RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17678SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17680DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17681PE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G17691DU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17706WH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17707JT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17707VT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17716HE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G17719WX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17728WW", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G17782JG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17787TV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17790QU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17805IT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17844FX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17860DR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17918JQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17920GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17929OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17931AG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17935CU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17940JF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17940ZL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17999QY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18007PN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18010HV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18011IN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18028VD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18037KL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18037TZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18039HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18059CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18062WN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G18062XZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18063QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18071XX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18104MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18181XX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G18221CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18232GI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18232WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18235OA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18238YG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18252JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18253ZI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18268KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18288MA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18315LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18318CV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18345QU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G18357AG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G18361EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18378DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18400RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18408VV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18414FL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18470LI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18475FR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18486BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18510JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18526RP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18528HV", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G18558MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18612LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18623WZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18625KA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18635IL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18635VH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18653TW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18666RM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18684WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18721GF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18749ON", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18759PN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18761HZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18775OL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18777XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18787WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18792RR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18798VA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18808LA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18809BK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18819TA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18865CZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18868DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18904JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18904WZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18913GA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18920NZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18921VT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18933GR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18945FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18983UN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18993ZZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19009LN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G19017MP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19024QK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19045PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19083VU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19090UP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19126UL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19130FU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19131IL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19152KQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19220VM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19244DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19274UN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19275DZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19278LV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19284DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19290HP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19298OA", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G19316KQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19329YV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19333TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19336PT", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G19337HV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19340FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19353JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19373RT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19378MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19379NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19382QM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19387QD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19403SS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19466PG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19490AF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19490HJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19501PV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19502QN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19503UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19503WF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19505HB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19506NG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19515QR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19524AS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19525AM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19529BG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19543NY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G19548ZL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19557PF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19558OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19562WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19585OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19618SB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19620VP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19625CF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19640ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19648VR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19675BE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19734UA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19751QT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19776GU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19776TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19817EM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19842AM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19847WB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19857HY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19889PB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19889ZI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19904TA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19906TL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19926LY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G19927IA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19933EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19957JG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19962EA", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G19972QF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19986NY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20007MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20009FG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20026EA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20044TD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20065XU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20072HK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20145VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20176SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20180GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20190ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20191HY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20193WD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20208VO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20256DO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20265RJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20267BN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20301WF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20318TT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20320OP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20326RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20329DG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20331IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20408VF", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G20415OQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20420WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20422YR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20457KL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20500JP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20515LB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20549ZT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20559QI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20570WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20574UF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20578GS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20578UY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20582KJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20598MJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20619BD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20622NR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20632RN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20639SU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20661LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20704OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20744ED", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20745XU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20751TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20784HR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20787KF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20816ZE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20818VS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20851AO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20866ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20907ZZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20922AM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20927GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20929TQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20942TC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20959TH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20959ZC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21028RE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21058TC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21065JQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21066IE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21066ZL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21067JW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21070MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21113AK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21118IB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21118TN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21130ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21133VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21139PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21161NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21164BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21209GV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21212AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21222YH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21224FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21228ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21236MD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21263MC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21269SH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21272DZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21288QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21289TX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21293AK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21295FZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21298OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21313XG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21352KD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21354HK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21362JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21375GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21375XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21377WO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21383AF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21401UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21427VY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21431WT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21446XC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21454XY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21485BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21486JX", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G21516MM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21518JT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21545ZW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21561XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21563EL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21570BS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21572FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21623DB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21651KX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21652BV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21700KV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21756PT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21769HJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21780FU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21793KI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21796XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21803JN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21804JP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21814SJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21816FF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21819WX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21856LC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21870UY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21890FV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21905IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21911MQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21920ZC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21938SG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21947TG", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G21951WD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21959TJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21974VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21976IF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21986FE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22003RS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22006BV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22019UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22031CK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22032IX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22051KW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22053ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22075QU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22106MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22166FJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22176ZE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22192GQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22213VM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22224FY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22224NX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22229BU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22244UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22251DB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22270QF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22277CS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22285MT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22291NN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22329KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22330NJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22353JW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22363RH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22387WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22402PS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22410UW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22418JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22444WD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22458ML", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22458ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22467AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22469MG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22471JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22473KM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22478ZB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22487TL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22490RY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22493WB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22519VV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22521BX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22534SZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22557DP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22558OD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22572ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22573UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22588DI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22607LZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22628YK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22638IW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22639OC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22647CJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22665UT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22677ED", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22689CV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22708NH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22709NM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22732DH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22732RT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22738HC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22749JK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22754NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22774YT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22776XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22784CD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22800MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22802LI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22814CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22830WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22832ZP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22864WE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22875VT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22880KN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22883GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22893MK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23034ZK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23052GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23060UX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23068LG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23069WI", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G23080TY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23114RX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23147YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23151LZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23154TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23197RR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23214KL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23219MR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23237BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23251MK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23259FL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23261ZT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23268NB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23289VI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23320JT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23331SO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23333KI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23340DP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23347CS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23365SP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23366YW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23395CJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23410GT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23416GB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23418QR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23483YA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23530HV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23534JU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23539GZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23575RW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23589NU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23596JQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23609VQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23613OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23619OV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23629ZI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23645YM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23651JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23674WQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23681XP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23708IA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23764HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23768QN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23778PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23778TK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23799PV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23799VJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23803EM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23828LE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23841ON", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23866JN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23909UE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23910FD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23916HE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23919QQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23952DE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23955MI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23966JI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23983FH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23991OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23997SS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24012NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24034CH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24038BC", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G24054SU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24085OV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24096IK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24108BY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24146KP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24147YR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24158WB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24160OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24181ZL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24183XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24199AR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24205BA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24221ZF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24242FT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24267OV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24274RK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24276RE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24325LU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24352FX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24381FI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24384AP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24418EH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24427EI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24435DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24443KL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24450YM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24499XE", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G24504JY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24521PI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G24526CF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24528SB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24532SS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24536MY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24546AY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24564AN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24578GW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24619EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24624WL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24628OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24631FW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24638PB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24658ID", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24663XE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24667KN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24673RP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24675SB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24693UW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24696QL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24710SR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G24743DR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24757TB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24767RJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24790LX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24817UV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24837XO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24853EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24885YJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24896AG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24940NZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24953KB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24957GS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24961UY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24988NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25000OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25039EK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25045TC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G25052RV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25138MK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25141CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25144YW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25155OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25178FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25184KQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25216QA", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G25228EL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25231DK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25268QT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25278OE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G25285RC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25286QK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25300PO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25302QS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25303QF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25315HI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25317DI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25341OG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25355GN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25361DH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25395JX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25400QW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25449MM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25456GG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25457JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25466EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25471IM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25507FN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25551XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25554YF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25576NO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25607IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25615DN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25617US", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25623VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25645CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25674WK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25675RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25695XW", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G25750FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25785LX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25795FR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25795QP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25796EC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G25815IN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25818RY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25846VM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25857PM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25859HN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25865NX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25873ET", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25889HA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25900WY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25938VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25940DW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25943ZQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25944NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25956VZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25984EB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26021TP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26036PN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26039ES", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26047BG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26070RB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26072QU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26080VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26082WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26109XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26123AX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26141MG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26148PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26151WB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26156WV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26171WT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26179LE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26184ON", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26192RP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26199BG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26203DP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26237YH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26242OS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26262IF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26276HR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26304UF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26328EQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26364SD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26375KY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26430ZR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26460NH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26471XA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26473JD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26493OD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26503PC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26563GL", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G26583BK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26602MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26634XL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26640RK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26644DY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26658IQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26658RH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26662SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26663JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26678XQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26688JC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26692TC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26697HL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26719SL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26740OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26768BK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26814KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26821XH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26875JA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26885EH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26890OC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26899ZP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26904NW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26910SA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26935KM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26941NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26954BE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26973VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27006LO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27011EZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27014FJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27018TS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27026TE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27032ME", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27036VQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27085CO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27101JC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27164YI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27172ZA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27178LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27204KU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27216AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27229SZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27239WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27243GN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27244KP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27252PE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27253QP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27274RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27326UA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27338ID", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27345IC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27359DP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27385YM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G27386EE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27395KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27403GX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G27405XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27410UA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27412QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27431KG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G27441RA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27459RV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27476OM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27512ST", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27534XO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27535EB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27565SZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27597CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27602YV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27603YQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27620XW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27630DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27631HH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27633IM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27633IW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27669AF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27676JU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27688CW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27699QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27723TL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27755TN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27761LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27763WY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27780SA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27813RT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27816PZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27896GN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G27919TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27938KB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27939BZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27950WB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28059ZR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28060IH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28061KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28062BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28067EM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28095OP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28114SX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28141KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28165JK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28207IC", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G28208MV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28214DB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28230YA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28240ZE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28247OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28261RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28269NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28273XW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28278YB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28303ZW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28320RB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G28331VY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28333CH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28359NZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28405CE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28424QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28434CJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28440QS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28477UY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28517VU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G28520DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28538TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28553AZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28566CQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28568HS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G28604UG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G28637OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28726IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28747EI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28762DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28800UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28814ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28853SM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28868PL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28868ZC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28887GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28913LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28921CD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28935BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28938BC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28947UJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28953NL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28972VP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29011DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29011GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29014RU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29053OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29084XK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29090AY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G29107MV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29157QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29159YJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29183GB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29185GO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29213NK", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G29221AR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29230VB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G29247YS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29249WW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29266JN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29275CW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29276TP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G29298GZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29302NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29360WZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29369ZL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29398UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29404WA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29418MQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29434JL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29437VV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29450EP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29451DX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29466FI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29470MA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29483FZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29497RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29527VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29530DJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29531IU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29557RI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G29591PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29594FL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29638NX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29643GJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29644ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29645LT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G29657AG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29658JP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G29672UH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29680GI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29715QQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29747CH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29757BL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29777ZC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29800ED", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29803YD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29831MX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29835QQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29859KI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29900GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29900YC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29907JM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29918XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29923RP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29924NS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29934FG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29940RQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29941TA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29964CE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G29966WK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29969UN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29995OZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29995RP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29997FV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30007FD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30011XT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30028KZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30106JO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30113XR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30142GT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30173NO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30187JM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30209GK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G30211NR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30216ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30249AE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30284MN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30299SS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30335ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30350VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30359NH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30396GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30409YH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30411HI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30434GV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30461ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30479HB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30499XP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30502RO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30515MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30531GO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30532XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30534BG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30567WW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30606LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30614ED", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30616LC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30622WV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30633DZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30648VY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30655IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30657NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30661NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30693UA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30711AD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30716NO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30725CV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30738AJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30764RR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30764XF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30775MJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30806FA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30816RB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30816RQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30834XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30837MK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30844TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30846UH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30866MH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30891XB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30908FP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G30909LI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30910VV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30925QW", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G30979ZT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30981SB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30988VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30998FW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31003XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31009XT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G31039KM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G31089XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31116GS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31164DZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31210MJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31260VK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31296LI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G31323MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31331VZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31334IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31341TO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G31360PH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31407FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31423NL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31428NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31430SZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G31432OQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31457FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31470NX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31515JW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31567WT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G31569EM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31571NW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31588UR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31602HM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31613TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31616UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31627XJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31651JD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31682GT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31703US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31713BP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31713XX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G31722WH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31734TP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31740OZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31760OO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31761VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31786PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31806HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G31818FE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31831UH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31865PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31870CX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31872TH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31890BE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31892BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31927XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31932VR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G31938TD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31941HB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G31962YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31963AJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31969AK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32000AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32048NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32061UE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32093IA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32108RV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32113QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32118KN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32142BT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32142XF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32165MO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32166DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32205XM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32208HU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32218QT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32225VS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32231NJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32241KY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32252UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32254QI", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G32257ZX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32265BZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32321PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32325OQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32337NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32340QV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32363KK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32391RG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32417JV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32452JU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32476MI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32505ZO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32526BV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32540JJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32566HO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32570CD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G32570WF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32582CM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32592HX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32600YA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32604DK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32623DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32625ZI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32639VU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32665EN", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G32679VL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32683MW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32685CP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32685NO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32698HD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32747TK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32755YS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32771NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32773JJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32787BE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32801HX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32816HT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32819WD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32829CA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32851DU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32860ZZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G32867PR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32878AH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32912BE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32938PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32967PZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32969VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32971XA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32986TN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32988OE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33009DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33020YH", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G33033DC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33035WV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33037KD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33047PQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33057TO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33085GB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33112BU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33131BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33145GJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33170MV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33175GZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33178VU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33191NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33198NP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33213NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33224VN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33233SN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G33246GQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33255ZB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33259YG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33337AB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33337MW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33340GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33344QB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33347WY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33350YB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33355QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33357UE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33365ZD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33366UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33370UM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33382UZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33391ZV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33394ZE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33402AN", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G33454WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33466YT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33480TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33502HC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33503TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33516EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33519HI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33559RM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33564HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33569DD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33570YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33575EC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33597HV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33649VP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33660KT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33662YL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33666ME", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G33711VF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33723EK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33733IG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33734NL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33765XW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33769NR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33823OW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33831NM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33853OT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33854WS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33861ND", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33868CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33870PD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33874AV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33879ZM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33880OZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33889GK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33910SX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33928CD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33940EI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33963WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33966RW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33972EG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33981OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33988QH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33997GL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34030LQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34066OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34072OC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G34094KX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34135AU", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G34135GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34152JG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34155LO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34173EV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34177WW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34207FC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34211XO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34216YN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34283FZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34285LF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34287TM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34294BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34295NM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34313LI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34337NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34354EU", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G34355FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34357ML", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34358NJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34376NH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34409VD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34433ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34443LL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34473LL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34479GI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34487LD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34491AS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34496IR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34536XC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34547EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34553KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34561JO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34569VD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34570FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34581QG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34582AE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34594DF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G34598QV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34629XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34650PD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34663XR", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G34674RX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34683KF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G34696JS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34709TM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34716XJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34730WJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34736QE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34793HD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34795YW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34797BZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34827IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34868UA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34870YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34876YB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34878UL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34886TG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34915XM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34924DC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G34926IG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34941JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34993RG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34995KD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35033DR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35035JZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35045UK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35061ZY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35075BF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35132AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35189HY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35204AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35205EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35218BT", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G35228ZS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35270RH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35275HF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35298RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35317BW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35348LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35350DS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35362TE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35363NM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35369ST", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35389ZR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35406BC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35408LA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35448LP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35459NB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35492RH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35520YO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35525BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35546TB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35562PU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35566SI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35580KB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35598VH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35601BV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35601RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35638MG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35638ZE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35690KO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35722GB", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G35727FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35728NL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35730FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35750OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35752ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35793BK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35827XH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35839XA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35879BG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35894PP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35904ZB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35915AS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35924IL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35951JD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35960LO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35989CX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36043JE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36058QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36072FN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36085MF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36097NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36100LR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36160KT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36180TB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36182WO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36195LV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36234UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36263SU", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G36264SN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36281WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36286VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36305KH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36316QQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36324PW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36350OR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36352YB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36367UP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36368WM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36377WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36383ZJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36400GY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36414LJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G36419UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36431NE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36441GD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36444IU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36467MU", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G36476BA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36515FF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36535HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36547OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36569JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36579WK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36598HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36654UF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36660PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36660SM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36673GG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36691KB", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G36692ET", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36702YL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36716WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36723FO", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G36728FD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36780GT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36781UQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36808PJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36825HL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36854DS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36864YV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36870BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36882YW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36934GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36950DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36966OD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36970IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36983AG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36996YR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37043KH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37049NT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37056YM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37114HJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37117TJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37130TL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37148OL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37161YC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37184KW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37197CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37223OF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37234PE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37235TY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37246BZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37246GN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37256HT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37279GB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37329VY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37337KC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37368TD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37402WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37414OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37419DL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37466ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37467FA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37511RU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37539ZE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37552GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37563FN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37599MP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37602JF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37629LW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37651NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37681WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37709OU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37714BK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37716BB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37716UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37721LB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37736TM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37739VD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37748CT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37772BE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37774ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37781BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37805DA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37815LJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37830TX", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G37864KF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37867ZC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37879VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37917UZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37918TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37961TE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37974GN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37990JU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37994GS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37997SE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38006JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38006RV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38033QX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38045PX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38047HX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38062KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38124GV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38157AO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38163LH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38165VA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38184ED", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38198RF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38199RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38210ZD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38231NR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38249LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38251WF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38265KO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38277CG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38285SE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38292IJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38296WP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38325PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38330TG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38398IX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G38403LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38431XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38469KM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38472BQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38481GS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38482EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38552LX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38560FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38565XH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38570HW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G38576EM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38602GT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38606VR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38611JU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38624LQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38624YQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38643YP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38644LV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38673OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38695WE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38697BZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38710SX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G38745KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38747GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38766VC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38807DH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38814XM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G38828TE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38898VO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38923RO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38936WI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38949DT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G38979OV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38985UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39011KA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39027IM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39069AT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39074KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39080VZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39133HC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39141IM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39188CA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39206EA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39280XN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39289DE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39320DU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39322TD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39325ES", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39326SA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39342PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39374MZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39376AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39426YT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39428LZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39441NS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39446HB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G39453HH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39473BV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39484WM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G39497XB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39504MC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39513CH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39544CS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39578VI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39603SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39631VK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39655AK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39662GZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39678KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39686QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39693LV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39711RF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39723JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39737XF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39741QR", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G39790MV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39794DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39799YU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39808HN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G39818NQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G39837NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39850EU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39861AN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39874GI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39877DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39884NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39884QV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39909EZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39935DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39946YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39952AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39952EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39962PZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39964XX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39968UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39969GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39970RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39982LL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39993RL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40014XX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40016IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40027TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40028TR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40041RJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40044IU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40047MJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40053EL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40061SQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40069KL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40100VR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40103VO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40104OM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40125MP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40132BT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40152LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40155OZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40164WC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40183QN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40184OL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40201MZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40205MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40234LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40249UC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40263XO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40267KK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40279NS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40286QP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40306MD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40333LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40336JD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40389FN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40402KD", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G40415EL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40428BG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40458PO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40464VV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40472TS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40491DT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40491JE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40492MP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40502PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40503RB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40539WX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40559LK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40585SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40654PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40657ZV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40658FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40670TE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40684IN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40702HI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40704LK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40723AK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40737EA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40761HE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40764VP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40789ML", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40793GY", "type": "Glycosphingolipid", "subtype": "Arthro series" }, { "glytoucan_ac": "G40856SD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40890RC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40894MP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40911RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40925ML", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40933JL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40955CS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40968SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40990LB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40996VT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41059RW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41060WK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41063ME", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41068KF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41078PD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41082WI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41087SI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41091BW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41103JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41109NO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41114NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41117VL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41122XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41131AQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41145US", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41161SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41179DF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41181ZG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41187EG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41192XR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41195XL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41202OE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41202YP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41211IT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41235SU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41253CH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41265SA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41318VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41329FW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41340EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41366RG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41369GA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41392AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41402DP", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G41416MJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41429JQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41441JX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41445SH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41451DF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41469UO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41472HM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41473XU", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G41474PO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41496WC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41544XW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41559TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41567CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41569JZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41575IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41655FU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41671KD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41704PA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41709CA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41722LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41733ZK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41759HA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41760KJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41809LE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41821AK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41868HL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41869MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41870DO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41876BL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41876QI", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G41883JI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41925UY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41939GY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41939JF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41945RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41960WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41962VB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41966ZK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41974TM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41992MM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41994UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42031FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42111EW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42166HQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G42167FI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42169KP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42187XB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42188UZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42208LC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42256GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42257KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42274XB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42296CW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42300HO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42304ZX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42339FF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42368WD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42372JP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42414NX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42426DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42429RJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42435HX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42436GS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G42444AY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42471EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42471QL", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G42494BC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42553JB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42570XX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42588FS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42610YN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42664TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42676MU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42706QP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42727QA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42740WR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42764EW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42772NB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42784QY", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G42794EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42803PB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42804BC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42821SE", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G42837HU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42857LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42886BF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42925XE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G42925ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42952ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42970NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42981GC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43008OB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43015ZG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43016YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43031YU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43040ZY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43042LE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43060WU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43084LS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43088TW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43088UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43105RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43110WG", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G43116LH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43123KY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43124SR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43130YE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43135VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43144DG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43145MG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43160NX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43166PG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43170RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43173HF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43174OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43194OW", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G43211QV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43224AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43224ZR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43245MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43248VC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43250BX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43275QV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43277KK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43300WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43327VF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43334PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43349GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43365XJ", "type": "Glycosphingolipid", "subtype": "Arthro series" }, { "glytoucan_ac": "G43387CH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43421FP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43453YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43495HR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43501VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43502TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43509TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43516IV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43571PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43578PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43613BP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43622SG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43625CC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43647BQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43648PG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43686JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43708DU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43709XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43722YD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43727KP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43745JV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43771NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43784EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43804GS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43810IL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43813LG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43818LO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43836ZB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43840SR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43841TA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43872OD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43887JP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43888BM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43891JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43896ZL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43925HI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43930QJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43939NQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43944UW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43973KI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43998BW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44008HZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44023AZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44029SF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44044BE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44045HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44049YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44110PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44111WR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44113UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44129WJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44142AM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44145OW", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G44183LA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44183QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44206ID", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G44219AA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44224KM", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G44258ND", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44261QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44280TL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44310IT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44317WC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44319SG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44321EA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44324ML", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44362TS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44378RC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44414OJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44438VR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44452NG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44460RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44468LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44483CH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44526IB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44534UF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44540QB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44564LW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44579JX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44602KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44612JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44638SB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44643DB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44653LT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44685RK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44733WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44737QR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44739HH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44792WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44797BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44802MC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44811LM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G44815FG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44821RV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44834GV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44843HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44850HT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44856HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44859BH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44875TU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44894DO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44922NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44933AY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44936HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44936KU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44943NL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44977YS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44989NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45026EP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45099QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45103LD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G45114GN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45118OA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45140IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45179WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45194OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45195EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45211RL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45215IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45238JI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45248NB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45275NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45278XL", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G45302KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45323ZF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45354TV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45392YH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45400XL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45433XK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45486PA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45491TQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45497OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45513VH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45522CT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45536SD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45561WU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45568AH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45570JA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45592PM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45611KQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45614AE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G45615OW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45624LJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45629MQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45709QT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45714BQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G45728EK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45772UU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45774GE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45788JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45796AX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45817SC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G45827GY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45844KY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45850CT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45855TU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45964TO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46001MW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46022SX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46046HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46067UI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46071XO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46074DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46083NH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46120KJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46120VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46125KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46127ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46142XJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46167TE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46188YO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46239II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46239WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46248BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46249ME", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46271TS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46286SX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46290BF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46332MF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46347IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46360JU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46367IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46410GC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46421ZG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46432VC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46445LO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46449WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46461VY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46482HZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46510OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46541XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46569SP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46573GP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46582AF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46613JI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46627YI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46631TR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46635KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46641RE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46642UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46653EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46677TE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46699KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46712IX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46733KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46742VO", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G46770BH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46775JK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46785VD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46797GW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46799LA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46816YG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46849DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46852YU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46868PH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46873LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46884IT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46907AV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46925NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46929PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46933YN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46962CL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47015HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47037FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47046CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47047YK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47073CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47093BJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47163SC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47166ZR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47190IR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47202ZJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47219QN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47220PE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47224BK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47255FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47272IV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47273NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47296EB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47312IG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47329OU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47333HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47336HE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47346BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47372UM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47410KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47419EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47437DS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47437ED", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47442DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47466ZF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47470TL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47474JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47504RX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47546BW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47573CE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47614ZH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47643RP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47694YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47716WA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47725UR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47740OM", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G47765YE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47776ZA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47781GM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47809QP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47825JC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47841LL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47850FH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47863IJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47880JM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47920XU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47922TD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47928KI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47940GT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47954AY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47969LP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47970KN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47976ZQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47980RJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47982SP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48052YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48059CD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48061MK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G48076AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48084WK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48115EL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48120JT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48120WX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48140EO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48154LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48169CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48193DD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48217QC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48233VF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48236RC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48257AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48285RM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48291UM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48318UI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48353MP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48394VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48400CZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48400DU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48414OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48415OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48441KG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48455YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48478GC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48488UW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48532GF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48542TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48558GR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48560LJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48567YH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48577SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48606LC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48635LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48643VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48652QR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48657AV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48675IA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48699XJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48730FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48733JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48734JY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48736CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48739TL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48740SL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48756XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48766VR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48802FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48811NO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48838EV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48851WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48867AQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48890SH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48913GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48963AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48967YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48969HM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48974JE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48977MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48980HE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49041CO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49042YY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49046GT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49101QW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49117TS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49118ZT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49124LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49157OO", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G49181SW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49183WA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49211UN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49244LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49245BM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49250JY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49280NJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49289HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49299WO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49305ZE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49320XS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49325TM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49333DC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49333PZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49338RK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49349FS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49359UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49403QD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49404MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49413LL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49423BG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49449BQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49467ZI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G49488CS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49532VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49539WP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49540SV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49543JM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49574GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49587PY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49601UN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49614WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49615DO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49620LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49625UW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49641CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49646ZX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49663WW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49689OQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49691SV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49694WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49708ZB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49764YU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49789HD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49791FJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49800ZN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49809AU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49812DC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49813VF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49824JU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49859TR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49860OE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49866JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49877ZY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49900MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49903WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49905OX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49920VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49922XM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49932TZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49935PI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49961JQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49995LQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50000BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50026IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50033ZJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50083WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50085FY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50116PC", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G50123ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50127MZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50135FN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50138LF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50157XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50166FA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50172OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50182HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50185CM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50186QS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50186ZP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50195ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50200KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50221XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50248BL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50251EH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50252MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50277GE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50292TF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50300JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50302DD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50318MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50319NW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50321QR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50328JC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50331GM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50331RU", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G50336DT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50340QI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50345ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50439PO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50443RA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50460ME", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50483QX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50487YA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50504AR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50504QA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50517DR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50539ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50540JU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50571WR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50574XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50576GW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50598JV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50604GS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50606VA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50622EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50624KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50624UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50653UY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50674LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50692LL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50708OX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50709KW", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G50724SP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50727CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50733RG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G50737VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50750UF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50762GU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G50790RU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50840BB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G50847MW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50866KI", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G50870EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50882AV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50887TF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50888IQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50889HK", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G50918DF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50933ZE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G50950LE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G50962LI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50964FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50967SW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50977RZ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G50992EZ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G51010TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51014DP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G51022CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51045UG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51047RS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51077XN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51083UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51092SE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51119AC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51123DJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51129KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51132ID", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51136LJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51175LB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51197ZR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G51214CJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51216ZQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51231DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51256CL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51256JC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51259RH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51264PM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51291FK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51294LX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51349EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51359TV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51396EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51412PR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51418BY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51434VR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51444RO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51458PP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51465VH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51467DA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51514QQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51530FC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51615LM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51633NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51640ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51647UX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51661GQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51663HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51695BV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51699SI", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G51712ZZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51719TS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51723XH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51725SG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51744CI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51747MD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51762MG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51813EW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51852RL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51855ZY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51865IU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51881BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51882OJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51894FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51904VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51921JZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51926AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51932GA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51966MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51979RL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51984QE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51985OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52011MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52038OW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52040ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52056QL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52060AP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52067GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52077LR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52134DC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52139HZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52148JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52160KJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52217MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52263GC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52284QB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52324RX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52331OF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52333FC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52337IZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52358FW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G52364HQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52370OE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52375TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52380FC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52388RL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52402OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52414WY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52475CU", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G52483QG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52486LX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52505EM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52509IJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52532CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52532IK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52546IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52551JW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52599ZE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G52685IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52697MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52713HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52715CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52725AC", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G52728VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52734GZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52736WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52747ZF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52763AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52773AW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52779ZS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52789LB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52792TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52833UW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G52900DK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52915NJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52921KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52966FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52967NB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52973JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52984PW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52994CS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53013IT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53015ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53017GV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53035ID", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53054FX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53092UZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53094UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53140PB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53192UO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53197YA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53210KA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53218AI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53219UW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53221YL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53224UW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53231BQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53238US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53271TQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53315TP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53335TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53352VJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53353OW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53380AH", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G53407QF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53414BX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53425CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53441BO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53448LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53456IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53470SL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53509WS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53523XH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53544LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53561SR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53569TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53574EG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53577TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53625EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53628LR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53629LP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53665CP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53702EK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53718KF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53727WI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G53738ES", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53743TV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53750GJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53809EF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53810QC", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G53811SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53812EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53872MQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53880PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53896OL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53915RL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53923CR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53930XS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53937DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53938ZR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53950VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53964XP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53967VU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53969KM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53978FA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54020TT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54021WX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54027IQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54067DW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54089ZD", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G54092SK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54099FP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54100IS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G54149AQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54155ZJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54163AD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54181UH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54189IW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54192TL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54198XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54220RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54239DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54244EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54257VH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54267NT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54278ZZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54286RQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54305WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54312KX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54333GA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54353FA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54369RQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54380HB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54388ZL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54397HG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54409JS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54420BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54429MF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54434YJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54442GQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54457LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54461DN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G54495OW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54501JY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54511PJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G54525GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54525WT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54579OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54585VU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54590JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54604OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54631ER", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54631HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54636IC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54657OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54671CY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54675DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54679PS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54690LY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54709BF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54716JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54721WC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54733XO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54746NB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54748KL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54762FC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54763CE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54765IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54767LB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54771ZD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54774KV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54779BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54799DU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54799FV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54828XA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54833IG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54851PH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54867OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54884BX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54886PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54920VX", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G54986YK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55026RI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55026YW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55028LV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55051FB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55051LE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55054OM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55057OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55067XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55076BX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55076JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55098MO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55104KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55116GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55116QE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55135LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55147XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55153IW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55186PG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55205JA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55221PW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55231NA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55250UC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55263LJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55268IR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55273EV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55298KW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55331KX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55341SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55343NM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55373FB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55394UQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55410EG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55424JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55459IJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55468CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55486BW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55493MW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55507NB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55547HH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55556DU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55557NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55560AP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55561ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55568JR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55582YT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55586CM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55588GQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55601IV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55608CO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55611DM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55611EY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55615MV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55633AI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55659LZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55662WM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55674DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55699TS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55710II", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55727HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55730AF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55734FJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55737IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55739DE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55748LU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55763HW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55773QM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55777ZN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55791XL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55796HY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55807JY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55834UL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55885HS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55908UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55925YH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55929FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55945YW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55954SF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55967QW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55970WN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56001HY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56006ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56017EQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56059PK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56075VK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56103JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56133NW", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G56140AE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56149VT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56154BC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56180KG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56181LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56190ON", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56209QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56213BV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56236CP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56256NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56258AG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56262LH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56277VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56298XO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56310WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56317PC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56372FJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56375AH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56390QA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56393JI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56413FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56430MO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56452CV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56464AW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56478LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56516VH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56517XV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56519EN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56525EU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56526JU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56528XC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56547DQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56548QI", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G56590ZL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56608NS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56619UM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56621YQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56624SW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56630LC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56635GS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56643UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56660NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56676WG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56680YP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56688OU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56690FO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56737MI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56741TR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56769LC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56781ZQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56827MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56845GO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56870IY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56879CD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56896RW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56915DR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56923FN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56931MP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56933NO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56967CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56970JS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56978EC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56999DB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57025PP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G57089NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57100KZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57102SD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57137KP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G57195UD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57210SQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57215PV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57226RK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57243PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57274OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57333RX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57349AQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G57399QL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57426LR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57436AR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57441KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57460VY", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G57465BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57478AQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G57486OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57491AM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57515XH", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G57547PJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57548NB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G57557BP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57587GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57602RY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57603BX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57612BV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G57631EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57644YG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57647HE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57656TH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57672GN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57676EM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57710SU", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G57733JI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57733ZF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57736AH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G57797BA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57814YS", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G57829QI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57835II", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57839JN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57875CW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57920AK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57931UF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58019RP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58042JX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58051DH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58108NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58113QB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58121OQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58124XI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58145IC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58192HE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58199AW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58210OS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58213XM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58216AM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58223WL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58237WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58253LI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58254CZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58255FK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58274PS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58283XP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58293WT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58301IC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58306WW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58329RP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58336YA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58342PV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58344DV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58344PL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58347AZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58372YP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58377JK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58385JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58397VY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58399HX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58452XH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58469MG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58472YY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58516AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58522OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58527II", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58540DT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58545MF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58552BU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58575YW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58576XD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58598ZJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58611OO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58615XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58618MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58654YT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58732VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58757RS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58758MJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58793RU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58797JF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58822SA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58827PN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58885JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58887JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58896AZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58907RR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58930HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58937DH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58938QK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58943FQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58945YG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58947TQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58966MB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58990QD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59047YP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59059LG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59065BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59065TK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59066UJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59069AO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G59121IT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59140UY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59147VR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59163SO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59213AG", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G59222MP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59239HU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59239WS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59240OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59254WN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59281RJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59303OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59321KG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59337YR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59351TP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G59381KD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59404RU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59419BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59419HU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59432OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59478IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59485OU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59491WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59508TM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59564NC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59577RA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59594RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59598NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59611UV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59637YC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59716ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59724US", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59735FS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59736KH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59754MT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59774SV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59789QX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59792FQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59840HE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59852VB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59883ZT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59915KM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59924XR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59948PS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59951QN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59967VI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59995RD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60013VR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G60014FA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60014MR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60033IX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60036PJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G60039WT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60067KH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60070NH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60071QR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60071VH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60090YA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60109PL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60111FZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60123HZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60125IW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60134ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60151XT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60168XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60180XJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60184IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60184UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60203MI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60215XR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60228TP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G60234WF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60236AJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60240YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60257UU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60273PS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60274EI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60276JD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60286NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60308MW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60364OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60366UG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60472XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60474KY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60486XU", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G60492QF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60501QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60504JW", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G60504ZR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60525HJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60532TQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60539QY", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G60540HU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60576EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60611WD", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G60618DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60620RA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60629OV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60636RG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60645OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60665OR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60672SD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60673PW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60707IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60716WG", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G60722SX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60731JP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60739BH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60755WU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60768RB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60771OS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60800QP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60801QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60808UH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60815QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60867VZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60939WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60943VK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61004FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61028BR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61043KX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61045CU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61055FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61087VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61095SW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61121IE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61158IP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61168WC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61169KO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61178UR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61184RV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61193WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61197PN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61224OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61247KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61281VS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61287UQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61303HI", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G61305ZB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61316DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61328AC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61358CK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61366AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61386ZX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61399NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61404CI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61416CS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61421VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61431WM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61446AW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61484ZW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61520PS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61523RC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61524KN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61556JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61573NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61624LR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61659NQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61664CH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61665MY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61667CO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61681XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61686OO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61693MC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61701FD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61702AK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61710AG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61713UA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61718WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61721ZA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61734NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61752HI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61756VD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61776FU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61807WT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61814LX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61823NN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61849OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61896ZX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61904ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61905WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61907DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61908AD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61917OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61930ZO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61954XA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61961BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61966PH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61998UE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G62009AR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62011LB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62012RD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G62028SP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62056VT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G62060LC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62081QB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62081ZB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62082AD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62097SF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62121FH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62158SB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62180QZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62181UJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62191HL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62204FH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62206XK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62209UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62210PO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G62225YW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62232OG", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G62238LR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62247TQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62251CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62256FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62288XJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62300UR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62316TQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62323OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62354MC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62369YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62377BH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62415JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62421SJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62439BR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62460CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62462YC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62469NH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62493PW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62494VF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62505RR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62515CB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62522NE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62527EG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62545KN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62546OB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62554JH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62559BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62562IW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62566FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62571UK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G62578QX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62579QI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G62582RY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G62631WH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62635FG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62640NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62658XM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62663TM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62669XC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G62672CD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62719QO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62745YK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62759AF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62761YH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62776HF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G62785KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62801YJ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G62847TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62870ZM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62926NR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G62933FW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62955NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63001DW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63012FY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63014UY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63033FI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63034IM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63045MN", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G63053GR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63063JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63079ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63083GQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63085NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63110FF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63124QX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63135UF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63143SS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63165YN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63172FY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63200EC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63227BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63235JS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63238VS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63250DI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63272GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63282TI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63284EN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63296BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63299OR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63312WP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63327AP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63332HR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63338KU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63357SV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63367WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63389KA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63402KD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63412DQ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G63477YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63493WR", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G63496FG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63520EZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63521CI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63524HL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63539GC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63563UN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63569MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63570QO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63586XH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63607QJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63611ZF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63614KK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63621KM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63630KO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63661KP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63670YV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63672XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63675TT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63677TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63689CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63694JO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63728VN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63732JW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63768EQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63782BU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63813EJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63828DS", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G63828QT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63830BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63839XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63852VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63864WL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63873ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63883UO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63954IW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63977XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63978ZE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63981YU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63992GH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63998IX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64003EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64007NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64010HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64011FV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64014BL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64018KD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64021SI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64050XD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64176BH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64183CB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64185VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64189GC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64193FB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64199VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64223CQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64227KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64232TP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64245GE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64253RM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64256FG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64260NK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64271BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64279JS", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G64289QQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64301WQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64315DN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64343PB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64386BR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64388ER", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64404PV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64407FC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64408ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64427XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64428DQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64433JO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64448AC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64463GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64500KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64501FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64506SD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64529AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64538MP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64547NU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64592DQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64593RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64615YP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64623CG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64623GC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64624XQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64627MH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64642ML", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64646SW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64651FB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64665ER", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64665JS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64714RC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64725HA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64783LH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64784NL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64804DL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64812KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64829AO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64842QB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64854UO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64855FW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64858OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64869AU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64873JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64885AH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64919UI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64943CI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64968QT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65006QR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65010WF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65070LF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65085HC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65097BM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65108YC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65109OK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G65112QB", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G65124WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65138GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65147SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65150XT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65156XZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65165RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65166VR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65181DG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65192DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65194MM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65201PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65223RT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65236OQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65252JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65255ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65276XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65309UJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G65345NM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65365VP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65432SL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65434MQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65440VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65467NS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65524NS", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G65533MH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65536FS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65542KP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65560KB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65686FS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65690RR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65696SL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65716WE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65718MY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65741LB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65744QH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65746OX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65756CN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65882DG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65891UG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65898DT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65980MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65997OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66005RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66008DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66037WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66066CB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66068XE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66080XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66120GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66128JY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G66131WK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66140MH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66141KC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66143SD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66147FA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66150KC", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G66159UZ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G66161CZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66166SQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66168TG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66170NY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66176WC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66192KI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66210BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66215JQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66222TX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66266XM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G66272NF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66281XG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66284OG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66296ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66300WN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66306TN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66312KY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66361NS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66381UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66391HI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66409CQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66410BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66427ZQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66428LH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66436YQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66463TJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66473XM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66480HI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66481II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66505KY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66521TP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G66542WL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66556SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66561TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66570CU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66582MS", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G66609VL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66624IK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66624KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66625HY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66630RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66644QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66645DV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66658TA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66673BG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66678DU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66683WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66685CE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66723QO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66729FK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66740MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66763JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66763RD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66781RS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66814LV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66826AV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66857VL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G66862TO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66889DJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66892DM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66903UP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66921SR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66982KL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66986MB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66990QB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G67008OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67011VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67026KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67030AV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67036DM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67040UP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67053DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67054IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67061LT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67098NW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67137SS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67163FW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67229ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67280SN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67313FB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67314OV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67314XY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67318OS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67343HZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67353YY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67357EP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G67367KM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67383AR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67387BO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67400IQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67440KJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67447FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67463LN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67489XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67517BF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67529BO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67533NN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67603AC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67609HJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67610CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67613XX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67622RU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G67648HS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67649WM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67659ZE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67694PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67698UZ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G67710XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67714LU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67719JC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67734BQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67770PM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G67785RW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67803JQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67819AV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67821EI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67832JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67833SS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67865FF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67866OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67866QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67881UE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67896FO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67935HZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67941SR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67951HH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68007FI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68018CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68019OD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68020FU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68026UI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68028NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68044QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68048NR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68049EI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68074FW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68105ZN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68110IF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68113KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68125YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68137PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68137QB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68138LS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68146EG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68149OD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68158GU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68158OV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68164OC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68179GF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68185NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68186WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68189PG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68208BX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68249NJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68257ZA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68315SO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68345XS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68371HY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68380GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68409IZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68409ZE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68415EV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68425FT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68494EQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68496PA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68502TK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68506FT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68514DJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68566QL", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G68584SZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68588WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68597CL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68640EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68640EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68651CL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68676IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68676WO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68762AY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68789GU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68802NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68804MY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68844VO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68851QG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68853CN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68856EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68867HM", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G68867LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68878AY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G68909IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68909KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68910MO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68933BN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68935MX", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G68937DI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68983XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69022RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69041DP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69053FP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69081WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69113UA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69123AM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69137UC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69140HM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69148PZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69158OT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69161BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69176ID", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G69187MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69187WD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69211UR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69213XM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69217QG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69220PX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69240GD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69248PQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69255QH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69265FU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69277LC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69308NJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69388BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69408FI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69412YT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69423HN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G69434BG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69444VS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69448NA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69464WX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69465YZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69468XJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69469KQ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G69476KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69508SI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69512CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69524MO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69534IP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69536IH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69536QI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69571DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69600CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69650KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69658QM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69681RG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69704GD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69742YU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G69766TH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69783BP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69783RS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69825SU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69839KX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69843VA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69849LW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G69851ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69859RT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69877QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69881FC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69893KP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69898FE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69915CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69916IP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69918WS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69920YC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69928MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69983CO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69997GH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70000DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70002UM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70023SA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70046IH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70048GJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70058HN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70061HE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70061HU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70065GE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70076OP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70093DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70106DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70115XG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70139CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70151NU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70192OC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70199PM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70213NR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70231JR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70245TG", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G70265CT", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G70270HA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70279EJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70283AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70307EN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70313VK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70314CC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70314DU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70320AB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70348BN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70355PK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70379IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70383OB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70418BK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70437IR", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G70445JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70453EL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70453QY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70458PC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70473VD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70480RO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70483AA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70502VR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70507DZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70541LO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70568QI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70573KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70626PU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70647TI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70655MK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70696OG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70699AI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70699LL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70709LC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70713JX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70748WO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70774LF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70794HX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70811IE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70811UE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70814AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70833HG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70852XB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70866LY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70874WW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70887UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70888IM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70889AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70908UR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70938LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70984WL", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G70995VB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70995XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71010LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71012YN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71023ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71025DD", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G71026KP", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G71027IW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71038MC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71082HA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71107PA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71116XO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71121AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71122GW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71137DN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71142DF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71153XE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71158TZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71213YU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71230WH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71252AI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71253GR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71264OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71300IN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71309QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71337EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71416GU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71440VW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71462KX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71469SQ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G71481EO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71484TR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G71485PH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71503SK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71529KC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71539PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71551HT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71565PB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71587NH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71602RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71609ZK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71614BZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71623LG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71651XN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71659FD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71684LJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71686XC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71687AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71688NS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71724NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71728MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71750KG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71791TJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71804ZL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71807XR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71820GM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71821OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71840XB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71849WE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71893QN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71924XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71938CQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71956IS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71987VX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72002FC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72075LG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72078OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72079HR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72090UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72121PV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G72130YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72145IN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72154ZM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72163XD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72173RI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72182XS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72185VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72229WI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72234YU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72245LN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72292JH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72340SJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72344YZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72367JI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72383WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72395MI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72436TV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G72437KH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72494BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72506RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72528ZZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72545NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72555NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72557NR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72561AG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G72565VD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G72571ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72590SG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72627IU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72639CY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72663HO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72672CX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72692DY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72701BV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72704UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72748AQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72761SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72778GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72806VZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72824HL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72825VD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72830DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72840IQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72845XR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72846IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72868NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72879DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72892PR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72894SZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72897KA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72945HX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72950LO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72964RM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73001SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73028QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73047LK", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G73086NS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73099DG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73113TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73151VC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73162UU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73192TV", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G73209JX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73216SF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73241DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73245VI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73247EV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73251IT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73257RC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73261LB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73262RS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73288YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73292IW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73304RJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73313ZV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73348SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73349BT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73358GA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73381RY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73432VT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73451ZZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73488PA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73490NS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73501LG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73521HC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73524DT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73540DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73557XU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73566LT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73571EB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73578NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73587EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73597XM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73608AH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73611VT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73619PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73640JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73644IQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G73648AU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73654KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73703LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73717AG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73721BI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73746JO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73749NK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73754EW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73769QI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73775MH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73782XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73797MI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73814US", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73904AG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73909WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73910RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73936EU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73954OI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73966WN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73983XW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73999PV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74010TR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74052AH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74063YA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74081CV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74102VO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74113LG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74120HQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74133OX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74161MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74203JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74208YL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74229VN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74264VN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74267UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74290DI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74317LJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74324PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74349ZV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74354KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74357UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74378JC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74386YM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74391YB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74394BJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74408VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74434IR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74463KT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74478YU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74488IL", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G74513JA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74537VZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74553FZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74556OQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74570BH", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G74573NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74602SY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74603QS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74609HP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74617OA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74621DY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74621TA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74624JM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74656GM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74656JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74665DT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74689YP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74709RD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74730ZY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74778UV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74779WZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74811WC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74823CH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74835NG", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G74842YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74861PZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74865UJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74882YF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74898MZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74917XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74933OP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74940OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74965IN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74976VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74976YZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74989GW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75027WI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75030WH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75043SA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75045LQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75056PK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75057NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75060XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75062WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75088WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75091FG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75096PE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75128XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75129FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75175WF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75188JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75192NK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75242MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75242TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75253BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75253GH", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G75262ZI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75277CR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75306VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75330XI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75331WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75370BN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75372BZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75373PB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75402FG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75412XG", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G75425VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75427AU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75437VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75450US", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75465YX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75483SB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75491MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75502AR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75516SB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75526ZI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75547TX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75567HL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75567OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75568XR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75596XQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75601KW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75635NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75660AY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75666MQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75675HT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75699GA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75734KX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75762RH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75765MM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75789AR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75791QY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75793XE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75804YG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75814EP", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G75819IL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75819UU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75826KS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75855BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75865YY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75869XK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75873HH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75913XW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75918UY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75934AG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75946PI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75955KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75965RY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75977QB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75986DT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75987RN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G76029TE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G76044NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76144DF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76177MU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76183GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76188VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76195TH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76220DL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76234II", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G76252RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76259TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76260HV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76305FA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76329AU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76344SX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76356HR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76375RB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76383CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76394YV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76398MP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76414XU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76425GZ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G76425LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76429CD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76429IR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76434UJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76439VL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76440EE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G76474BB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76481QC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76548SO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76562LW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76568UL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76574AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76596QC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76631VS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76638FT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76657BK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G76677LJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76684IW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76685GV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76691AS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76692UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76716UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76741XB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76742YJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76758TN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76796SB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76799QE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76800SO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G76811UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76817XI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76834NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76835SV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76840NL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76859VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76864KF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76866LJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G76873BP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76887JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76891AB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76894WU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76908ID", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76913LX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76949FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76969KY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76973CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76977EK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77019UJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77026KL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77029WB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77047WW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77048PE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77063PW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77067GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77070UX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77079RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77094JR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77099GK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77115OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77119GO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77135LY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77137FD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77145MR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77151OL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77159KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77165VD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77166AO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77186TD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77196BU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77233DH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77235BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77276QV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77284KW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77285LE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77288BQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77339RV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77347FE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77370JU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77372RE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77377LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77379VC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77392WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77395WU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77409CT", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G77415NC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77419BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77419LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77426UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77429RG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77442MO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77447CT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77451XV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77481VH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77495MG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77500AY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77506VJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77517VD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77539II", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77553BJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77554ZE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77580ZQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77593JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77608BK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77622ES", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77629XS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77632HJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77649JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77671SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77691XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77700XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77709HK", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G77741RU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77744CZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77800FH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77811EB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77815ZX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77833MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77841OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77849BI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77877UD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77893MJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G77912NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77912UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77942LK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77971RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77982VV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77989NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77993GH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77997HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78011LC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78072VO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G78074HX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78103ZD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78107NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78123CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78151IM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78152IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78159CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78159ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78173GR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G78185ZA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78205EV", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G78208WN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78222TG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78225JI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78242EN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78263DG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78263IN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78288OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78312KD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78324SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78327FF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78344OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78360SK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78367BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78367WA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78391TB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78418VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78430SF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78431CN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78447SQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78464AL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78481KH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78508BQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78531DR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78540IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78594WZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78596HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78603QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78612VQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78620TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78663EK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78687XY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78703MZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78712WU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78737HX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78800HY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78801YM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78806AD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78818SP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G78825DI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78859AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78864IW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G78869VK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78873LD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78884WZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78885JL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78902VT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78929WE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78930TK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78933LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78941GA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78955JC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78986EI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79017AN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79028VB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79029KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79031AA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79035BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79040NI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G79042KJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79045OC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79061XV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79069YJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79070AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79104LL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79107GH", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G79176OI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79205WJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79212MF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79231KU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79248YJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79249LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79249VN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79263DF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79269OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79277PF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79297GB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79328FZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79355HQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79359VA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79365EN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79375ZL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79382TI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79389NT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79393HI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79399GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79399YJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79401KU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79406XL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79407QS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79412YE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79413BC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79414JH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79420BT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79436QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79444AJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79448RG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79449CY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79468ZA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79481UP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79490IO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79501FW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79533UR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79536OW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79541AM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79541IN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79544XM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79574FL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79577SJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79578VV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79585IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79588UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79605VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79614ZW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79645BX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79648LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79661MW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79668RE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79682WT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79683KS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79694JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79704PQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79705OW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79713XX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79717OY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79725AK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79749VL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79751CC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79755IE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79756UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79776GW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79776YU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79778IP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79780HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79793CW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79828KF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79847QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79865AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79867YN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79868UA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79874WM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79904RJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79907QM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79930NT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79958YT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79982EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79982TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79984HK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79989QO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79990EW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80006OO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80016DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80016QG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80038GE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80061MS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80062GG", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G80085JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80094CW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80119YZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80123RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80162ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80181KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80191VM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80193TN", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G80206CK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80243CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80291PD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80303TB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80321KQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80324EI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80357KJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80360OF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80375GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80393RT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80413JB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80459IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80482UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80494PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80495XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80508RX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80517FW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80527WG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80537QG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80544IB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80554WA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80580OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80589WZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80610NX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80644NO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80739NE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80753ZP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80812QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80829RZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80838HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80844IW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80845OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80871ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80876BV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80876XE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80898BH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80902FY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80908GL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80909VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80933MT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80968NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80991KA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81004CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81009ER", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81009UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81020JP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G81032PV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81081TF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81086UC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81088TW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81099CA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G81149TB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81153OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81154RY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81173KG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81182NV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81183YX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81188FE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81216DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81218UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81220GC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81229DT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81237SW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G81237TH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81240GQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81243XR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81252MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81258JY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81271MF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81297HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81321XN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81337OK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81340AK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G81352TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81378YR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81408RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81450ZX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81452UT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81471NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81485FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81503YJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81521NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81524AY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81527RS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81539VB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81542ST", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81549AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81578NL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81596CU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81647RY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G81657MC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81675CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81686CQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81697FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81714CJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81719CZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81725PI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81740BZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81750QQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81761OR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81768ZB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81777PB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81788HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81799DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81831HC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81831TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81863AN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81865QV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81879LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81881OF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81910FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81914EA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G81928IQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81935SW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81949SX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81977TF", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G81982KB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81982NW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81983KG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82094WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82098JY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82099YJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82106UN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82113BJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82117PD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82130IT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82156OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82184VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82195SU", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G82197QV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82202JN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82211MN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82216FP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G82226RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82233EX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82252VY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82254GM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82257IP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82271PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82276DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82303RP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82306VJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82311QG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82325EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82338MG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82343BL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82348PP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82352ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82363GF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82374OR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82385GE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82403VJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82449QS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82454MN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G82461EN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82476PB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82478VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82493BQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82504BQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82513QY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82535VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82551NV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82558IX", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G82560FU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82564LG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82599LI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82605DV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82638RK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82639DV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82643CK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82646SA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82662IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82663MJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82710YP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82727OW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82748UB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82763TV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82785KW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82815IT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82831RR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82854PK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82858KU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82869YD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82893ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82894XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82907DV", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G82960NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82971XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83001FQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83025DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83041IT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83042PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83082ZQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83083BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83088QU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83097HR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83120FP", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G83134WQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83165LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83169EB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83173HC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83182VI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83205DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83209GQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83217RW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83217WV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83220EJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83261EH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83264OV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83276OP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83308JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83324EM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83404RQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83429VA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83513YI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83540EL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83540US", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83557NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83570DN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83579UI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83579XL", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G83645HN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83659OC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83663CO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83693ZR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83695DI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83699LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83711LU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83735EV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83761QN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83766VU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83768BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83779VD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83797YZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83821PF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83829JQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83830MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83874MQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83894BX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83906RF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83914PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83916BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83916HL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83950XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83951YF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83953WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83969IF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83981MV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83991TU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84003DT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84026AP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84034JH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84040KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84050HR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84052PW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84081HV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84083SA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84087NK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84117HN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84144JO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84159UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84167TP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84173YM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84174KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84224TW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84235MH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84247EY", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G84273ZH", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G84275GF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84281ML", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84310QM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84311MV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84325DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84335EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84348MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84348OB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84374QH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84376KZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84388WF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84392IR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84392MH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84400BA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84406HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84429GD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84434SC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84439WZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84439ZI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84443BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84462PG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84471TB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84472GV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84492TT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84494ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84497MR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G84511FL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84519UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84526ST", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84556IB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84561IM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84562KF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84606TI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84618VV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84623DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84629NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84645WY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84676AV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84707RO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84708MY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84717EN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84742FE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84763OL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84784TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84808RB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84811VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84818FS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84824ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84849MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84853MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84891DZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84899DL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84912RV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84936AZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84955OO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G84985ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84996EP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85007NI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G85057ZC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85114LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85122WX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85145IY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85154PS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85163FJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85163RD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85233RJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G85237WB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85239OB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85244OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85250FL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85252SY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85262VX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85263VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85278ER", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85301FR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G85323FO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85350TW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G85366WG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85380WH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85383RY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85416ZI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85424PW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85476BF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85497AD", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G85508HP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85536AI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85561JV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85581WQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85613LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85619IU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85620YV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85628BP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85642JD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85646QT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85668PX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85720NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85724TD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85735KR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85735NR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85738ZK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85810DL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G85825HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85826KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85861LW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85868ES", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85903NG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85930OB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85948PI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85974BI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86002DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86002WM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86017PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86037OZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86060BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86082TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86094NY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86113SB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86139YL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86143FV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86152ZQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86155LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86188RQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86192PU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86211GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86213NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86228ZZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86234TQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86236QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86237WM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86258CQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86262ZJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86282TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86369LQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86378KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86388AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86443CJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86445DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86519UL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86524BE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86535WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86545YS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86546AY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86547OK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86562DX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86562TA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86567NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86575MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86585MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86592LR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86616IT", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G86640EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86669RK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86670TP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86673JA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86696JP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86700TF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86712SX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86723HT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86723LO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86746TS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86760OK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86761WD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86768IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86801QH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86808SZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86811ZD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86817MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86830MN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86860TF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86874EI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86906WK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86950FO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86950QP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86951KU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86958EY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87011AR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87044UH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87051PY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87056IR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87067LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87091WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87119TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87128KJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87139BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87139RR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87143GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87146EG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87156SE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87164WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87193FV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87211CO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87224SW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87225SH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87251UV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87256TY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87277DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87288SC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87299FY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87351RF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87352TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87356FF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87366QT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87373RB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87381NE", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G87392ON", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87408KH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87418LR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87423KS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87433DT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87485AO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87494OF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87498KD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87516VM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87517GL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87564QI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87566RM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87573QL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87577UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87581MB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87584CF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87608GX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87683IK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87685WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87724OX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87727XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87739PS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87743XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87757EV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87764VO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87823LR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87830PS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87841AX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87859US", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87867IZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87925VK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87926VO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87934MY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87950NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87950XT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87959NL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87978JW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87989AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87997PG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88009HX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88010YW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88030QD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88068NL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88069OY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G88122VF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88147IJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88170LK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88171EW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88175KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88177YY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88188VJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88190EJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88192MM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88194BN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88202JO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88207NT", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G88224UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88241WJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88292NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88349NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88356HA", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G88363JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88373TQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88374EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88406BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88412DM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88426KH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88435BP", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G88435GS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88467FH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88495YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88499IC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88545DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88586HW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88587QY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88648CM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88681TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88687PJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88692PI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88702ZJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88705MM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88716RM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G88767NN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88783OQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88785AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88817DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88819GL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88822AB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G88822KL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88827RH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88841HD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88866SH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G88875CC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88886BA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88892FQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88917WY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88922EN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88990JZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89021XE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89025TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89027OP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89034YM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89074AP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89076PQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89082SI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89089ML", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89090BS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89090WX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89132BO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89203PY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G89221ND", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89236VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89237QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89249KR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89301PN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89324UD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89368FV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89393WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89396DO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89420DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89427FI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89439DB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89449YK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89466VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89467PI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89474SN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89487ES", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89488XC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89493SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89518YP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89523CC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89532QJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89542YI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89575QC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89578RR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89604BS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89616LV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89623FN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89631EN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89659QV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89664NW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89689HB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89700LG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89726CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89728KJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89736UW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89754LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89812HR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89815YL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89825IM", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G89835OL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89840WM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89899RZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89929QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89951CG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89951NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89953YJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89953YM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89980PZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89998UK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90018ER", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90033HQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90039FI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90078HC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90101BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90103BD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90108IF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90110ZK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90115NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90126ON", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90128OJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90194OL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90199DG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90205YZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90225TB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90235XB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90237JW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90250TR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90270UN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90293ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90300MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90320DV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90337SJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90342EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90349EN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90355RK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90358HB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90367HM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90377OF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90394ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90397YE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90398RG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90411BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90420EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90426ME", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90432GV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90473OY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90481XV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90490AC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90493BX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90502ZI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90503VR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90505NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90506FJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90539LD", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G90562PB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90591UU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90598GO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90615MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90626QU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90627EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90628LX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90659UT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90662WR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90670FN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90723FE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90726BS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90734LY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90775UZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90790YL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90805IW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90823ZH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90843QR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90865NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90878JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90892ZK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90916LJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90950JD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90970US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90979OW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90986VO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90998OM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91011HK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91039UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91067MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91077TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91082MW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91084QX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91102AK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91104FD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91109NK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91151RV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91161YG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91181WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91182AF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91203WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91230OO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91237TK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91240HI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91244GT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91258TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91283TY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91301ZY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91326YS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91385MJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91404LJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91420LU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91441JF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91462QM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91500TH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91501UO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91508MU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91514VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91526RR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91527BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91532KA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91535KQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91538AN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91545UA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91560NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91563UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91580VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91581VD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91586XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91592HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91604EV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91625YD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91631HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91641FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91649BT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91666HS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91689NU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91700SC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91706AL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91720CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91730NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91733GZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91745FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91765WL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91788TH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91789JU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91790DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91801TT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91823FR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91837NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91843GI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91844AP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91846TY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91885NF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91895FT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91896UO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91906GT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91945XP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91948FW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91959EZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91992EF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92001FG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92009TQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92010QJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92011FT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92014UL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92026AN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92039VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92047WH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92058BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92082JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92094GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92100BX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92175CL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G92221AV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92238TK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92258RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92264CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92279HJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92303LJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92315NV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92316KR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92329HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92400ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92429IK", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G92443DN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G92445MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92457JM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92463PQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92495JT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92508HS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92529ST", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92547VI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92562WL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G92564XJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92577DB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G92606WC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92617BH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92630VX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92646RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92649QH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92650AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92694VO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92697ZU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92711XR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92742GL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92750QY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92776YS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92784KW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92793NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92795CJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92803LC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92808JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92820EU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92830YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92836JC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92889HN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92912QK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92917CM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92920MA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92939FF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92940JX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92944JP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92965OP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93009SN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93041VZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93079VT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93102UB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93146WS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93147EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93173HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93174ZD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93210GW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93243AH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93265RE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93272ND", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93275KT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93275TB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93293OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93304BC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93353DR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93356UG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93393HC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93406FM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93457YH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93468NI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93472KA", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G93485ST", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G93509HU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93530WJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93536PN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93546EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93557ZJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93571AX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93594DD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93607OE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93641DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93658WO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93664OI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93678IP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93694YU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93697HU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93737AW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93737LO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93750WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93752IE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93760FW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93805MV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93805WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93871LV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93872XQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93899SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93902TR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93920IR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93921SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93977QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94004DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94010JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94050CO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94062MN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94086EF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94097TZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94103HD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94105GL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94110MD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94126RE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94129DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94134XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94135GM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94138KN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G94172VX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94173VC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94199RU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94208AD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94218PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94235HZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94258SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94263AT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G94278FQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94283CT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94289QJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94370IU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94374CC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94379JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94393CX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94396BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94416HL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94431LX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G94435CR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94442CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94458CS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94468TS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94476PG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94480CC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94498MI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94515TS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94526QN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94529WW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94542HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94562LS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94576MQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94585EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94627EK", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G94640TN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G94641WA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94654MJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94678GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94703CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94718VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94755GP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94765MZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94768DB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94769SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94799KL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94802UK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G94807YY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94822BD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94827XR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G94858ZC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94887MJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94888UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94894XC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94896MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94917JX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94940UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94946WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94953QI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G94976BB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G94982RX", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G94992MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95000GB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95006TB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95014LS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95039NB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95051LD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95063JB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95074TZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95098GZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95101QA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95115WR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95116WY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95127YQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95137GE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95142MK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95162SK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95174UI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95188WB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95206HQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95233MF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95283OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95304WQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95310NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95312UR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95327BW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95341UA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95346ZL", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G95357RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95379DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95424TQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95428DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95483TJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95487KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95523TV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95523YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95525DF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95569OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95570RC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95577EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95590MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95609SS", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G95617LH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95618BP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95676DI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95717BP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95746YS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95785PM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95811XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95831EN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95849GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95873VF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95882HX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95902TY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95906KW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95910BJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95932VM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95954OW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95969MO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G95986XI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96010FG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96021CD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96074CQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96095CO", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G96099NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96104VY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96116SQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96125BN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96128GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96131OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96138GY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96141FI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96152MT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96202SN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96211DM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96214EI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96233QD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96242HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96260GC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96267ZD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96332QQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96350WP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96355UN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96364RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96371MU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96400MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96401FK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96409QX", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G96427WI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96428WC", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G96442BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96447DS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96494HC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96504QH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96522ZI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96538JO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96548CQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96558GF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96577AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96589RI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96591PP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96596OC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96597OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96598ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96614JE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96637FR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96645BH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96648KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96653ZN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96679AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96698DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96699WJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96709CX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96717UK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96788KW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96834JC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96841VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96852OV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96853CY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96862HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96873AZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96880NC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96938SZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96991NM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96994CJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96997ZB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97033IB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97033ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97048GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97067QW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97077OZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97078PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97103MN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97110QS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97112CD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97114NU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97139LY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97155HP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97163JS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97168TC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97198YT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97222OW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97222TN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97276KK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97310HO", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G97316TG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97323OQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97323TT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97370EU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97397YQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97404MK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97434GB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97485LN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97503JI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97504JI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97536AL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97542CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97584MS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97584VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97612GY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97612UN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97623TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97626HJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G97647MZ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G97655JD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97655UC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97680ZB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97681VL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97706PY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97710WA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97718OE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97727IC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97732OH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97819AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97820EY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G97821VC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97837BD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97841KW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97848MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97862VK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97896NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97898ZO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97915SO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97917EY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97920HT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97921YP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97932OH", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G97932SL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97943LS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97950TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97953NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97957RW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97965OG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97975GF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97992HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98037ZG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98041GK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98052MQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98095FX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98104FF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98150TD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98156VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98165IQ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G98166RS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98173LG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98190NG", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G98195XI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98196VA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98213XU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98218JC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98226DD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98229SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98244EF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98251XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98278RD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98313OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98342BD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98397EB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98419BR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98431MA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98447LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98461EU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98465JN", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G98474IR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G98487HH", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G98522GP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98528DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98531AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98531ST", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98537PP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98544DH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98545QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98565KW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98569UQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98588WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98656QJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98667GG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98670RK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98699UK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98699WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98707CQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98715JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98726UE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98748OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98750DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98756WR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98765KG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98771VI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98801DP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98848EU", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G98852IR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98880BO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98896JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98900YM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98901LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98903KQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98917TP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98918GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98970IN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98973MQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98993DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98994FU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98996UE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99016SX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99017PG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99019LG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99034UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99042JP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G99053DY", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G99066TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99072VW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99137DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99144NI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99181PQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99192EY", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G99196JZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99213KZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99216BH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99218FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99237NJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99242KL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99256VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99260NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99283SL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99287LH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99289DI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99312NX", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G99315QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99341BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99350IC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99359PI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99368SZ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G99373GG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99398DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99421OG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99423BR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99431IB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99454GF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99466VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99468TN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99481EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99506XN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99509IG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99524KA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99560EQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99571ZU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99572JF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99580PT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99580SM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99594LR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99608LK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99627GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99634KV", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G99669ZF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99682TV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99684EZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99705ZJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99708XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99723FZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99725YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99739TG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99789YU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99794YB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99835YB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99843PU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99844LF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99867KU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99884YO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99915NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99923IT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99931LS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99950OD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99968QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99976JK", "type": "Other", "subtype": "Other" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 204, "end_pos": 206 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPS2-1", "uniprot_ac": "F1SPS2", "uniprot_id": "F1SPS2_PIG", "mass": { "chemical_mass": 36043.0, "monoisotopic_mass": 36043.0 }, "refseq": {}, "gene_names": [ { "name": "SYN3", "type": "recommended", "evidence": [ { "id": "F1SPS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" } ] } ], "protein_names": [ { "name": "Synapsin III", "type": "synonym", "evidence": [ { "id": "F1SPS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPS2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPS2", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYN3", "url": "https://www.uniprot.org/uniprotkb/F1SPS2", "locus": { "chromosome": "5", "start_pos": 12500076, "end_pos": 12473793, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040453", "url": "https://www.ensembl.org/id/ENSSSCG00000040453" } ] } } ], "crossref": [ { "id": "F1SPS2", "url": "https://alphafold.ebi.ac.uk/entry/F1SPS2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000040453", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040453", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013815", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013815", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10841", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10841", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10841:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10841:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02750", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02750", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AFB0", "url": "https://www.uniprot.org/uniprotkb/A0A287AFB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPS2", "url": "https://www.uniprot.org/uniprotkb/F1SPS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEEGAPTQLSTGTGIENQHDYLDITSMVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDKQLMADLVVSKMSQLLMPGGTVPSPLRPWAPQTKPAKSPGQAQLGPPLGQPQPRPPTQGGPRQAQSPQPPRSGSPSQQRLSPQGQQPLSPSSGSPQQQRSPGSPQLSRASGGSSPNQASKPGTTLTSQSRPPVQGRSTSQQGEESKKPAPPHPHLNKSQSLTNSLSTSDTTQRGTPSEDEAKAETIRNLRKSFASLFSD", "length": 335, "header": "tr|F1SPS2-1|F1SPS2_PIG Isoform 1 of Synapsin III OS=Sus scrofa OX=9823 GN=SYN3 PE=1 SV=4 CANONICAL=F1SPS2-1" }, "isoforms": [ { "isoform_ac": "A0A287AFB0-1", "url": "https://www.uniprot.org/uniprotkb/F1SPS2/entry#A0A287AFB0-1", "sequence": { "sequence": "LGTGWIKVENQHDYLDITSMVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDKQLMADLVVSKMSQLLMPGGTVPSPLRPWAPQTKPAKSPGQAQLGPPLGQPQPRPPTQGGPRQAQSPQPPRSGSPSQQRLSPQGQQPLSPSSGSPQQQRSPGSPQLSRASGGSSPNQASKPGTTLTSQSRPPVQGRSTSQQGEESKKPAPPHPHLNKSQSLTNSLSTSDTTQRGTPSEDEAKAETIRNLRKSFASLFSD", "length": 327, "header": "tr|A0A287AFB0-1|F1SPS2_PIG Computationally mapped isoform of Synapsin III OS=Sus scrofa OX=9823 GN=SYN3 PE=1 SV=3 CANONICAL=F1SPS2-1" }, "locus": { "chromosome": "5", "start_pos": 12499075, "end_pos": 12474754, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051918.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051918.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042520.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042520.3" } ] } }, { "isoform_ac": "F1SPS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPS2/entry#F1SPS2-1", "sequence": { "sequence": "MTEEGAPTQLSTGTGIENQHDYLDITSMVAMAKTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRLWVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDKQLMADLVVSKMSQLLMPGGTVPSPLRPWAPQTKPAKSPGQAQLGPPLGQPQPRPPTQGGPRQAQSPQPPRSGSPSQQRLSPQGQQPLSPSSGSPQQQRSPGSPQLSRASGGSSPNQASKPGTTLTSQSRPPVQGRSTSQQGEESKKPAPPHPHLNKSQSLTNSLSTSDTTQRGTPSEDEAKAETIRNLRKSFASLFSD", "length": 335, "header": "tr|F1SPS2-1|F1SPS2_PIG Isoform 1 of Synapsin III OS=Sus scrofa OX=9823 GN=SYN3 PE=1 SV=4 CANONICAL=F1SPS2-1" }, "locus": { "chromosome": "5", "start_pos": 12499075, "end_pos": 12473793, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000165.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000165.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000163.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000163.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFB0", "url": "https://www.uniprot.org/uniprotkb/A0A287AFB0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "synaptic vesicle", "id": "GO:0008021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008021", "evidence": [ { "database": "UniProtKB", "id": "F1SPS2", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SPS2", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "F1SPS2", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" } ], "pmid": "" }, { "name": "synaptic vesicle membrane", "id": "GO:0030672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030672", "evidence": [ { "database": "UniProtKB", "id": "F1SPS2", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neurotransmitter secretion", "id": "GO:0007269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007269", "evidence": [ { "database": "UniProtKB", "id": "F1SPS2", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" } ], "pmid": "" }, { "name": "synaptic vesicle clustering", "id": "GO:0097091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097091", "evidence": [ { "database": "UniProtKB", "id": "F1SPS2", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SPS2", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPS2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 335, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPS2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPS2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPS2" }, { "id": "PF02750", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02750" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Synapsin ATP-binding", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 150, "start_aa": "Ile", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 292, "end_pos": 294 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGD7-1", "uniprot_ac": "F1SGD7", "uniprot_id": "F1SGD7_PIG", "mass": { "chemical_mass": 45374.0, "monoisotopic_mass": 45374.0 }, "refseq": { "ac": "NP_001231245", "name": "nucleosome assembly protein 1-like 1 isoform 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231245" }, "gene_names": [ { "name": "NAP1L1", "type": "recommended", "evidence": [ { "id": "F1SGD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ] }, { "name": "NAP1L1", "type": "synonym", "evidence": [ { "id": "NP_001231245", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231245" } ] } ], "protein_names": [ { "name": "Nucleosome assembly protein 1 like 1", "type": "synonym", "evidence": [ { "id": "F1SGD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGD7/entry#names_and_taxonomy" } ] }, { "name": "nucleosome assembly protein 1-like 1 isoform 1", "type": "synonym", "evidence": [ { "id": "NP_001231245", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231245" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NAP1L1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7", "locus": { "chromosome": "5", "start_pos": 39328052, "end_pos": 39363711, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000522", "url": "https://www.ensembl.org/id/ENSSSCG00000000522" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000522", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000522", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524086", "url": "https://www.ncbi.nlm.nih.gov/gene/100524086", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524086", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524086", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AAECKQN", "url": "https://omabrowser.org/oma/group/AAECKQN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287AFP4", "url": "https://www.orthodb.org/?gene=A0A287AFP4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SGD7", "url": "https://www.orthodb.org/?gene=F1SGD7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11875", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11875", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00956", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00956", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231245", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231245", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AFP4", "url": "https://www.uniprot.org/uniprotkb/A0A287AFP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8W3", "url": "https://www.uniprot.org/uniprotkb/A0A287B8W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B8W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B8W3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN67", "url": "https://www.uniprot.org/uniprotkb/A0A287BN67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BN67-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BN67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QPG4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QPG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QPG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QPG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1L7C1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1L7C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1L7C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1L7C1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFJ8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFJ8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG78", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FG78-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FG78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGD7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADIDNKEQSELDQDLDDVEEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 391, "header": "tr|F1SGD7-1|F1SGD7_PIG Isoform 1 of Nucleosome assembly protein 1 like 1 OS=Sus scrofa OX=9823 GN=NAP1L1 PE=1 SV=1 CANONICAL=F1SGD7-1" }, "isoforms": [ { "isoform_ac": "A0A287AFP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7/entry#A0A287AFP4-1", "sequence": { "sequence": "MADIDNLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 328, "header": "tr|A0A287AFP4-1|F1SGD7_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 1 OS=Sus scrofa OX=9823 GN=NAP1L1 PE=1 SV=3 CANONICAL=F1SGD7-1" }, "locus": { "chromosome": "5", "start_pos": 39355001, "end_pos": 39331937, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048014.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048014.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042840.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042840.3" } ] } }, { "isoform_ac": "A0A287B8W3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7/entry#A0A287B8W3-1", "sequence": { "sequence": "MADIDNKEQSELDQDLDDVEEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 364, "header": "tr|A0A287B8W3-1|F1SGD7_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 1 OS=Sus scrofa OX=9823 GN=NAP1L1 PE=1 SV=2 CANONICAL=F1SGD7-1" }, "locus": { "chromosome": "5", "start_pos": 39355001, "end_pos": 39331937, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061909.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061909.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052512.3", "url": "https://www.ensembl.org/id/ENSSSCP00000052512.3" } ] } }, { "isoform_ac": "A0A287BN67-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7/entry#A0A287BN67-1", "sequence": { "sequence": "MADIDNLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADE", "length": 300, "header": "tr|A0A287BN67-1|F1SGD7_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 1 OS=Sus scrofa OX=9823 GN=NAP1L1 PE=1 SV=2 CANONICAL=F1SGD7-1" }, "locus": { "chromosome": "5", "start_pos": 39355001, "end_pos": 39334016, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048385.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048385.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058059.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058059.2" } ] } }, { "isoform_ac": "A0A8D0QPG4-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7/entry#A0A8D0QPG4-1", "sequence": { "sequence": "IAALDPNLKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEVMFTK", "length": 302, "header": "tr|A0A8D0QPG4-1|F1SGD7_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 1 OS=Sus scrofa OX=9823 GN=NAP1L1 PE=1 SV=1 CANONICAL=F1SGD7-1" }, "locus": { "chromosome": "5", "start_pos": 39342029, "end_pos": 39334001, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074706.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074706.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062195.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062195.1" } ] } }, { "isoform_ac": "A0A8D1L7C1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7/entry#A0A8D1L7C1-1", "sequence": { "sequence": "VLSAFKGLSRIIDRHLDEALSFPKHKVARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEVMFTK", "length": 361, "header": "tr|A0A8D1L7C1-1|F1SGD7_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 1 OS=Sus scrofa OX=9823 GN=NAP1L1 PE=1 SV=1 CANONICAL=F1SGD7-1" }, "locus": { "chromosome": "5", "start_pos": 39348946, "end_pos": 39334001, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052687.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052687.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041699.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041699.2" } ] } }, { "isoform_ac": "A0A8W4FFJ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7/entry#A0A8W4FFJ8-1", "sequence": { "sequence": "SKEQSELDQDLDDVEEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 386, "header": "tr|A0A8W4FFJ8-1|F1SGD7_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 1 OS=Sus scrofa OX=9823 GN=NAP1L1 PE=1 SV=1 CANONICAL=F1SGD7-1" }, "locus": { "chromosome": "5", "start_pos": 39350103, "end_pos": 39331937, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105798.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105798.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077643.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077643.1" } ] } }, { "isoform_ac": "A0A8W4FG78-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7/entry#A0A8W4FG78-1", "sequence": { "sequence": "SLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEVMFTK", "length": 300, "header": "tr|A0A8W4FG78-1|F1SGD7_PIG Computationally mapped isoform of Nucleosome assembly protein 1 like 1 OS=Sus scrofa OX=9823 GN=NAP1L1 PE=1 SV=1 CANONICAL=F1SGD7-1" }, "locus": { "chromosome": "5", "start_pos": 39341642, "end_pos": 39334001, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097227.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097227.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078434.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078434.1" } ] } }, { "isoform_ac": "F1SGD7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD7/entry#F1SGD7-1", "sequence": { "sequence": "MADIDNKEQSELDQDLDDVEEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 391, "header": "tr|F1SGD7-1|F1SGD7_PIG Isoform 1 of Nucleosome assembly protein 1 like 1 OS=Sus scrofa OX=9823 GN=NAP1L1 PE=1 SV=1 CANONICAL=F1SGD7-1" }, "locus": { "chromosome": "5", "start_pos": 39355001, "end_pos": 39331937, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000564.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000564.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000553.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000553.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0QPG4", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QPG4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524086", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524086", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1N552-1", "protein_name": "Nucleosome assembly protein 1-like 1", "gene_name": "LOC112441545", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "SNQFILKEISPECSLEGLKLKLKLQHLLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKVEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDSEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEVQYKIGNLQV", "length": 367 }, "evidence": [ { "id": "F1SGD7", "url": "https://omabrowser.org/oma/group/F1SGD7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BZS2-1", "protein_name": "Nucleosome assembly protein 1 like 1", "gene_name": "NAP1L1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MADIDNKEQSELDQQDMEDVEDVEEEETGEDANSKARQLTVQMMQNPQILAALQERLDGLVGTSTGYIESLPKVVKRRVNALKNLQVQCAQIEAKFYEEVHELERKYAALYQPLFDKRSEIINAIYEPTEEECEWKADAEEEISEEMKEKAKLEEEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSEVGQPMSFTLEFHFEPNDYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFSPPEVPESGDLDDDAEAILAADFEIGHFLRERIVPRSVLYFTGEAIEDDDDDYDEEGEEADDEEGEEEADEENDPDFDPKKDQNPAECKQQ", "length": 393 }, "evidence": [ { "id": "F1SGD7", "url": "https://omabrowser.org/oma/group/F1SGD7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P25293-1", "protein_name": "Nucleosome assembly protein", "gene_name": "NAP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSDPIRTKPKSSMQIDNAPTPHNTPASVLNPSYLKNGNPVRAQAQEQDDKIGTINEEDILANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECKQS", "length": 417 }, "evidence": [ { "id": "F1SGD7", "url": "https://omabrowser.org/oma/group/F1SGD7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28656-1", "protein_name": "Nucleosome assembly protein 1-like 1", "gene_name": "Nap1l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIDNKEQSELDQDLEDVEEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEVSEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNDYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPENGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 391 }, "evidence": [ { "id": "F1SGD7", "url": "https://omabrowser.org/oma/group/F1SGD7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P55209-1", "protein_name": "Nucleosome assembly protein 1-like 1", "gene_name": "NAP1L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADIDNKEQSELDQDLDDVEEVEEEETGEETKLKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESLPRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 391 }, "evidence": [ { "id": "F1SGD7", "url": "https://omabrowser.org/oma/group/F1SGD7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z2G8-1", "protein_name": "Nucleosome assembly protein 1-like 1", "gene_name": "Nap1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADIDNKEQSELDQDLEDVEEVEEEETGEETKIKARQLTVQMMQNPQILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEVSEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFILEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSKTSFFNFFAPPEVPENGDLDDDXEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDDDDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ", "length": 390 }, "evidence": [ { "id": "F1SGD7", "url": "https://omabrowser.org/oma/group/F1SGD7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "nucleosome assembly", "id": "GO:0006334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006334", "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "pmid": "" }, { "name": "positive regulation of neural precursor cell proliferation", "id": "GO:2000179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000179", "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "pmid": "" }, { "name": "positive regulation of neurogenesis", "id": "GO:0050769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050769", "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "pmid": "" }, { "name": "histone chaperone activity", "id": "GO:0140713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140713", "evidence": [ { "database": "UniProtKB", "id": "F1SGD7", "url": "https://www.uniprot.org/uniprotkb/F1SGD7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 267, "end_pos": 269 }, { "start_pos": 294, "end_pos": 296 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJE8-1", "uniprot_ac": "F1SJE8", "uniprot_id": "F1SJE8_PIG", "mass": { "chemical_mass": 44417.0, "monoisotopic_mass": 44417.0 }, "refseq": {}, "gene_names": [ { "name": "ZNG1", "type": "recommended", "evidence": [ { "id": "F1SJE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ] } ], "protein_names": [ { "name": "Zn regulated GTPase metalloprotein activator 1", "type": "synonym", "evidence": [ { "id": "F1SJE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJE8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNG1", "url": "https://www.uniprot.org/uniprotkb/F1SJE8", "locus": {} } ], "crossref": [ { "id": "F1SJE8", "url": "https://alphafold.ebi.ac.uk/entry/F1SJE8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005241", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005241", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03112", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03112", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156293", "url": "https://www.ncbi.nlm.nih.gov/gene/100156293", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003495", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003495", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051316", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051316", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156293", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156293", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJE8", "url": "https://www.orthodb.org/?gene=F1SJE8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13748", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13748", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13748:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13748:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07683", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07683", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AMG5", "url": "https://www.uniprot.org/uniprotkb/A0A287AMG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMG5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMG5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIF6", "url": "https://www.uniprot.org/uniprotkb/A0A287BIF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIF6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIF6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR36-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR36-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIM9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFPALGCVDEEEEQAEEDCPELVPIETKQREEEEEKFDPGARIPVTIITGYLGAGKTTLLNYILTEQHSKRIAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAALGVDIYLDGIITVVDSKYGLKHLAEEKPDGLINEASRQVALADIIIINKTDLVSEEDLNKLRTTIRSINGLGKILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHMSTTQPHADQSIVTVTFEVPGNAKEESLNVYIQNLIWEKNVSNRDGNCMEVIRLKGLISIRDKPQQVIVQGVHELYDLEETPVSWKDDTERTNRLILIGRNLDKDILKQLFIATVTETEKRWTKHIKEDQVCP", "length": 396, "header": "tr|F1SJE8-1|F1SJE8_PIG Isoform 1 of Zn regulated GTPase metalloprotein activator 1 OS=Sus scrofa OX=9823 GN=ZNG1 PE=3 SV=3 CANONICAL=F1SJE8-1" }, "isoforms": [ { "isoform_ac": "A0A287AMG5-1", "url": "https://www.uniprot.org/uniprotkb/F1SJE8/entry#A0A287AMG5-1", "sequence": { "sequence": "MFPALGCVDEEEEQAEEDCPELVPIETKQREEEEEKFDPGARIPVTIITGYLGAGKTTLLNYILTEQHSKRIAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGIITVVDSKYGLKHLAEEKPDGLINEASRQVALADIIIINKTDLVSEEDLNKLRTTIRSINGLGKILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHMSTTQPHADQSIVTVTFEVPGNAKEESLNVYIQNLIWEKNVSNRDGNCMEVIRLKGLISIRDKPQQVIVQGVHELYDLEETPVSWKDDTERTNRLILIGRNLDKDILKQLFIATVTETEKRWTKHIKEDQVCP", "length": 376, "header": "tr|A0A287AMG5-1|F1SJE8_PIG Computationally mapped isoform of Zn regulated GTPase metalloprotein activator 1 OS=Sus scrofa OX=9823 GN=ZNG1 PE=3 SV=2 CANONICAL=F1SJE8-1" }, "locus": { "chromosome": "1", "start_pos": 221570780, "end_pos": 221521421, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044378.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044378.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045078.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045078.2" } ] } }, { "isoform_ac": "A0A287BIF6-1", "url": "https://www.uniprot.org/uniprotkb/F1SJE8/entry#A0A287BIF6-1", "sequence": { "sequence": "MFPALGCVDEEEEQAEEDCPELVPIETKQREEEEEKFDPGARIPVTIITGYLGAGKTTLLNYILTEQHSKRIAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAALGVDIYLDGIITVVDSKYGLKHLAEEKPDGLINEASRQVALADIIIINKTDLVSEEDLNKLRTTIRSINGLGKILETQRSSLQKKLQHMSTTQPHADQSIVTVTFEVPGNAKEESLNVYIQNLIWEKNVSNRDGNCMEVIRLKGLISIRDKPQQVIVQGVHELYDLEETPVSWKDDTERTNRLILIGRNLDKDILKQLFIATVTETEKRWTKHIKEDQVCP", "length": 377, "header": "tr|A0A287BIF6-1|F1SJE8_PIG Computationally mapped isoform of Zn regulated GTPase metalloprotein activator 1 OS=Sus scrofa OX=9823 GN=ZNG1 PE=3 SV=2 CANONICAL=F1SJE8-1" }, "locus": { "chromosome": "1", "start_pos": 221570780, "end_pos": 221521421, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045522.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045522.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056386.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056386.2" } ] } }, { "isoform_ac": "A0A5G2QR36-1", "url": "https://www.uniprot.org/uniprotkb/F1SJE8/entry#A0A5G2QR36-1", "sequence": { "sequence": "MFPALGCVDEEEEQAEEDCPELVPIETKQREEEEEKFDPGARIPVTIITGYLGAGKTTLLNYILTEQHSKRIAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAALGVDIYLDGIITVVDSKYGLKHLAEEKPDGLINEASRQVALADIIIINKTDLVSEEDLNKLRTTIRYKIRSVLSTTKLKLCMQNIFIMTNCLVEI", "length": 251, "header": "tr|A0A5G2QR36-1|F1SJE8_PIG Computationally mapped isoform of Zn regulated GTPase metalloprotein activator 1 OS=Sus scrofa OX=9823 GN=ZNG1 PE=3 SV=1 CANONICAL=F1SJE8-1" }, "locus": { "chromosome": "1", "start_pos": 221545192, "end_pos": 221521421, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068865.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068865.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067382.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067382.1" } ] } }, { "isoform_ac": "A0A5G2RIM9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJE8/entry#A0A5G2RIM9-1", "sequence": { "sequence": "MFPALGCVDEEEEQAEEDCPELVPIETKQREEEEEKFDPGARIPVTIITGYLGAGKTTLLNYILTEQHSKRIAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAALGVDIYLDGIITVVDSKYGLKHLAEEKPDGLINEASRSINGLGKILETQRSSLQKKLQHMSTTQPHADQSIVTVTFEVPGNAKEESLNVYIQNLIWEKNVSNRDGNCMEVIRLKGLISIRDKPQQVIVQGVHELYDLEETPVSWKDDTERTNRLILIGRNLDKDILKQLFIATVTETEKRWTKHIKEDQVCP", "length": 348, "header": "tr|A0A5G2RIM9-1|F1SJE8_PIG Computationally mapped isoform of Zn regulated GTPase metalloprotein activator 1 OS=Sus scrofa OX=9823 GN=ZNG1 PE=3 SV=1 CANONICAL=F1SJE8-1" }, "locus": { "chromosome": "1", "start_pos": 221570780, "end_pos": 221521421, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071172.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071172.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071478.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071478.1" } ] } }, { "isoform_ac": "F1SJE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJE8/entry#F1SJE8-1", "sequence": { "sequence": "MFPALGCVDEEEEQAEEDCPELVPIETKQREEEEEKFDPGARIPVTIITGYLGAGKTTLLNYILTEQHSKRIAVILNEFGEGSALEKSLAVSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPGAVASMFWVDAALGVDIYLDGIITVVDSKYGLKHLAEEKPDGLINEASRQVALADIIIINKTDLVSEEDLNKLRTTIRSINGLGKILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHMSTTQPHADQSIVTVTFEVPGNAKEESLNVYIQNLIWEKNVSNRDGNCMEVIRLKGLISIRDKPQQVIVQGVHELYDLEETPVSWKDDTERTNRLILIGRNLDKDILKQLFIATVTETEKRWTKHIKEDQVCP", "length": 396, "header": "tr|F1SJE8-1|F1SJE8_PIG Isoform 1 of Zn regulated GTPase metalloprotein activator 1 OS=Sus scrofa OX=9823 GN=ZNG1 PE=3 SV=3 CANONICAL=F1SJE8-1" }, "locus": { "chromosome": "1", "start_pos": 221570780, "end_pos": 221521421, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005775.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005775.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005633.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005633.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR36", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR36" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156293", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156293", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" }, { "name": "zinc chaperone activity", "id": "GO:0140827", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140827", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "kidney development", "id": "GO:0001822", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001822", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" }, { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" }, { "name": "intracellular zinc ion homeostasis", "id": "GO:0006882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006882", "evidence": [ { "database": "UniProtKB", "id": "F1SJE8", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJE8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 396, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJE8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJE8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" }, { "id": "PF07683", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07683" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CobW C-terminal", "eco_id": "ECO_0000259", "start_pos": 275, "end_pos": 375, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SJE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJE8" }, { "id": "PF02492", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02492" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CobW/HypB/UreG nucleotide-binding", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 230, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 204, "end_pos": 206 }, { "start_pos": 303, "end_pos": 305 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ35-1", "uniprot_ac": "F1SQ35", "uniprot_id": "F1SQ35_PIG", "mass": { "chemical_mass": 59491.0, "monoisotopic_mass": 59491.0 }, "refseq": {}, "gene_names": [ { "name": "PARP15", "type": "recommended", "evidence": [ { "id": "F1SQ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" } ] } ], "protein_names": [ { "name": "Poly [ADP-ribose] polymerase", "type": "recommended", "evidence": [ { "id": "F1SQ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ35/entry#names_and_taxonomy" } ] }, { "name": "2.4.2.-", "type": "synonym", "evidence": [ { "id": "F1SQ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ35/entry#names_and_taxonomy" } ] }, { "name": "PARP", "type": "synonym", "evidence": [ { "id": "F1SQ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ35/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ35", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PARP15", "url": "https://www.uniprot.org/uniprotkb/F1SQ35", "locus": {} } ], "crossref": [ { "id": "F1SQ35", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ35", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011875", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011875", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01439", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01439", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02903", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02903", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012317", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012317", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14453:SF99", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14453:SF99", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ANJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287ANJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ35", "url": "https://www.uniprot.org/uniprotkb/F1SQ35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ35-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFEDCRRKSFASITFPMIATGNLRFPKAIFAELILSEVCSFSSSAQLNSLQEVHFLVHPSDDESCQAFLDEFTKWLKRNPNKDRCLMVGDNQGIFGTVSNPAVSTYEMKIGAITFRVAIGDITKEKVDVIVNSTTKTFNLKLGVSKAILEGAGPAVENECAWLAARPHRDFIITQGGYLKCKIIMHVLGENNVRDTTSTILEECERRKHSSVCLPAIGTGNAGQQPIQVADGIISATEDFAKKHSTPSLKSVKVVIFLPKLLDVFYENMKKREPSMPHIVQPTFSNTEFSGHYRQTCIKKSSRSVEYNLLSTDFPLEEENEIWGKITTIELEENGSEIAGRGEIPDHWTDMNQQLFCVIPLHRGQSEYTAVKDKFSQISHSFKIRKSYQVKKKQMDIKNGHTNNEKLLFHGTDAASVPQINQHGFNRSFAGKNAACYGRGTYFAVDASYSANDKYSIPDSKGRKRIYVVRVLTGDYTHGQTGMLTPPSKNSDNTKDTYDSVTDDINQPKLFVIFSDYQAYPEYLVTLSKR", "length": 530, "header": "tr|F1SQ35-1|F1SQ35_PIG Isoform 1 of Poly [ADP-ribose] polymerase OS=Sus scrofa OX=9823 GN=PARP15 PE=3 SV=4 CANONICAL=F1SQ35-1" }, "isoforms": [ { "isoform_ac": "A0A287ANJ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ35/entry#A0A287ANJ3-1", "sequence": { "sequence": "MFEDCRRKSFASITFPMIATGNLRFPKAIFAELILSEVCSFSSSAQLNSLQEVHFLVHPSDDESCQAFLDEFTKWLKRNPNKDRCLMVGDNQGIFGTVSNPAVSTYEMKIGAITFRVAIGDITKEKVDVIVNSTTKTFNLKLGVSKAILEGAGPAVENECAWLAARPHRDFIITQGGYLKCKIIMHVLGENNVRDTTSTILEECERRKHSSVCLPAIGTGNAGQQPIQVADGIISATEDFAKKHSTPSLKSVKVVIFLPKLLDVFYENMKKREPSMPHIVQPTFSNTEFSGHYRQTCIKKSSRSVEYNLLSTDFPLEEENEIWGKITTIELEENGSEIAGRGEIPDHWTDMNQQLFCVIPLHRGHSYSANDKYSIPDSKGRKRIYVVRVLTGDYTHGQTGMLTPPSKNSDNTKDTYDSVTDDINQPKLFVIFSDYQAYPEYLVTLSKR", "length": 448, "header": "tr|A0A287ANJ3-1|F1SQ35_PIG Computationally mapped isoform of Poly [ADP-ribose] polymerase OS=Sus scrofa OX=9823 GN=PARP15 PE=3 SV=2 CANONICAL=F1SQ35-1" }, "locus": { "chromosome": "13", "start_pos": 137912368, "end_pos": 137888658, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043999.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043999.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045637.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045637.2" } ] } }, { "isoform_ac": "F1SQ35-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ35/entry#F1SQ35-1", "sequence": { "sequence": "MFEDCRRKSFASITFPMIATGNLRFPKAIFAELILSEVCSFSSSAQLNSLQEVHFLVHPSDDESCQAFLDEFTKWLKRNPNKDRCLMVGDNQGIFGTVSNPAVSTYEMKIGAITFRVAIGDITKEKVDVIVNSTTKTFNLKLGVSKAILEGAGPAVENECAWLAARPHRDFIITQGGYLKCKIIMHVLGENNVRDTTSTILEECERRKHSSVCLPAIGTGNAGQQPIQVADGIISATEDFAKKHSTPSLKSVKVVIFLPKLLDVFYENMKKREPSMPHIVQPTFSNTEFSGHYRQTCIKKSSRSVEYNLLSTDFPLEEENEIWGKITTIELEENGSEIAGRGEIPDHWTDMNQQLFCVIPLHRGQSEYTAVKDKFSQISHSFKIRKSYQVKKKQMDIKNGHTNNEKLLFHGTDAASVPQINQHGFNRSFAGKNAACYGRGTYFAVDASYSANDKYSIPDSKGRKRIYVVRVLTGDYTHGQTGMLTPPSKNSDNTKDTYDSVTDDINQPKLFVIFSDYQAYPEYLVTLSKR", "length": 530, "header": "tr|F1SQ35-1|F1SQ35_PIG Isoform 1 of Poly [ADP-ribose] polymerase OS=Sus scrofa OX=9823 GN=PARP15 PE=3 SV=4 CANONICAL=F1SQ35-1" }, "locus": { "chromosome": "13", "start_pos": 137912368, "end_pos": 137888658, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012989.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012989.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012647.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012647.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANJ3", "url": "https://www.uniprot.org/uniprotkb/A0A287ANJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQ35", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SQ35", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "F1SQ35", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" } ], "pmid": "" }, { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "F1SQ35", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F1SQ35", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" } ], "pmid": "" }, { "name": "NAD+ poly-ADP-ribosyltransferase activity", "id": "GO:0003950", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003950", "evidence": [ { "database": "UniProtKB", "id": "F1SQ35", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of gene expression", "id": "GO:0010629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010629", "evidence": [ { "database": "UniProtKB", "id": "F1SQ35", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 426, "end_pos": 428, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 530, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ35" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" }, { "id": "PS51154", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51154" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Macro", "eco_id": "ECO_0000259", "start_pos": 102, "end_pos": 273, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQ35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ35" }, { "id": "PS51059", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51059" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PARP catalytic", "eco_id": "ECO_0000259", "start_pos": 344, "end_pos": 530, "start_aa": "Ile", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 426, "end_pos": 428 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGI7-1", "uniprot_ac": "F1SGI7", "uniprot_id": "F1SGI7_PIG", "mass": { "chemical_mass": 59525.0, "monoisotopic_mass": 59525.0 }, "refseq": {}, "gene_names": [ { "name": "KRT75", "type": "recommended", "evidence": [ { "id": "F1SGI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGI7" } ] } ], "protein_names": [ { "name": "Keratin 75", "type": "synonym", "evidence": [ { "id": "F1SGI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGI7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGI7", "url": "https://www.uniprot.org/uniprotkb/F1SGI7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRT75", "url": "https://www.uniprot.org/uniprotkb/F1SGI7", "locus": { "chromosome": "5", "start_pos": 17749493, "end_pos": 17760524, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000236", "url": "https://www.ensembl.org/id/ENSSSCG00000000236" } ] } } ], "crossref": [ { "id": "F1SGI7", "url": "https://alphafold.ebi.ac.uk/entry/F1SGI7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000236", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000236", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287APM4", "url": "https://www.uniprot.org/uniprotkb/A0A287APM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287APM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287APM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGI7", "url": "https://www.uniprot.org/uniprotkb/F1SGI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGI7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRQSTITFQTGSRRGFSTASATTPTTSRSRFSSVSVTRSPGGSGGLGKISGAGAGFGSRSLYNLGGTKRVSISGCGSSFRSGFGGRASGGFGVSGGFGYGGGIGGGYVGSGFSVPPGGIQEVTVNQSLLTPLNLQIDPTIQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWSLLQEQGTRTVRQNLEPLFDAYVNDLRRQLDNVTTERGRLDAELRNMQDVVEDFKVRYEDEINKRTAAENEFVALKKDVDAAYMNKMELEAKVNSLTDEINFLQMLFEAELSQMQTHVSDTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQVTAGRHGDDLRNTKQEISETNRMIQRLRAEIDSVKKQCASLQTAIADAEQRGELALKDARAKLVDLEDALQKAKQDMARLLHEYQELMNIKLALDVEIATYRKLLEGEECRLSGEGVSPVNISVVTSTISSGYGAGSGIGGSSLGVSGGSGYSFTTSGGHSLGTSLGGSGFSASSSRGLRGSGSSVKFVSTTSSSRKSYKH", "length": 550, "header": "tr|F1SGI7-1|F1SGI7_PIG Isoform 1 of Keratin 75 OS=Sus scrofa OX=9823 GN=KRT75 PE=1 SV=4 CANONICAL=F1SGI7-1" }, "isoforms": [ { "isoform_ac": "A0A287APM4-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI7/entry#A0A287APM4-1", "sequence": { "sequence": "MSRQSTITFQTGSRRGFSTASATTPTTSRSRFSSVSVTRSPGGSGGLGKISGAGAGFGSRSLYNLGGTKRVSISGCGSSFRSGFGGRASGGFGVSGGFGYGGGIGGGYGIQEVTVNQSLLTPLNLQIDPTIQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWSLLQEQGTRTVRQNLEPLFDAYVNDLRRQLDNVTTERGRLDAELRNMQDVVEDFKVRYEDEINKRTAAENEFVALKKDVDAAYMNKMELEAKVNSLTDEINFLQMLFEAELSQMQTHVSDTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQVTAGRHGDDLRNTKQEISETNRMIQRLRAEIDSVKKQCASLQTAIADAEQRGELALKDARAKLVDLEDALQKAKQDMARLLHEYQELMNIKLALDVEIATYRKLLEGEAAVVTSTISSGYGAGSGIGGSSLGVSGGSGYSFTTSGGHSLGTSLGGSGFSASSSRGLRGSGSSVKFVSTTSSSRKSYKH", "length": 527, "header": "tr|A0A287APM4-1|F1SGI7_PIG Computationally mapped isoform of Keratin 75 OS=Sus scrofa OX=9823 GN=KRT75 PE=1 SV=3 CANONICAL=F1SGI7-1" }, "locus": { "chromosome": "5", "start_pos": 17760524, "end_pos": 17749947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045017.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045017.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045847.3", "url": "https://www.ensembl.org/id/ENSSSCP00000045847.3" } ] } }, { "isoform_ac": "F1SGI7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI7/entry#F1SGI7-1", "sequence": { "sequence": "MSRQSTITFQTGSRRGFSTASATTPTTSRSRFSSVSVTRSPGGSGGLGKISGAGAGFGSRSLYNLGGTKRVSISGCGSSFRSGFGGRASGGFGVSGGFGYGGGIGGGYVGSGFSVPPGGIQEVTVNQSLLTPLNLQIDPTIQRVRKEEREQIKTLNNKFASFIDKVRFLEQQNKVLETKWSLLQEQGTRTVRQNLEPLFDAYVNDLRRQLDNVTTERGRLDAELRNMQDVVEDFKVRYEDEINKRTAAENEFVALKKDVDAAYMNKMELEAKVNSLTDEINFLQMLFEAELSQMQTHVSDTSVVLSMDNNRSLDLDSIIAEVKAQYEDIANRSRAEAESWYQTKYEELQVTAGRHGDDLRNTKQEISETNRMIQRLRAEIDSVKKQCASLQTAIADAEQRGELALKDARAKLVDLEDALQKAKQDMARLLHEYQELMNIKLALDVEIATYRKLLEGEECRLSGEGVSPVNISVVTSTISSGYGAGSGIGGSSLGVSGGSGYSFTTSGGHSLGTSLGGSGFSASSSRGLRGSGSSVKFVSTTSSSRKSYKH", "length": 550, "header": "tr|F1SGI7-1|F1SGI7_PIG Isoform 1 of Keratin 75 OS=Sus scrofa OX=9823 GN=KRT75 PE=1 SV=4 CANONICAL=F1SGI7-1" }, "locus": { "chromosome": "5", "start_pos": 17760524, "end_pos": 17749947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000255.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000255.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000251.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000251.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287APM4", "url": "https://www.uniprot.org/uniprotkb/A0A287APM4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGI7", "url": "https://www.uniprot.org/uniprotkb/F1SGI7" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "F1SGI7", "url": "https://www.uniprot.org/uniprotkb/F1SGI7" } ], "pmid": "" }, { "name": "cornified envelope", "id": "GO:0001533", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001533", "evidence": [ { "database": "UniProtKB", "id": "F1SGI7", "url": "https://www.uniprot.org/uniprotkb/F1SGI7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "keratinization", "id": "GO:0031424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031424", "evidence": [ { "database": "UniProtKB", "id": "F1SGI7", "url": "https://www.uniprot.org/uniprotkb/F1SGI7" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "F1SGI7", "url": "https://www.uniprot.org/uniprotkb/F1SGI7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "F1SGI7", "url": "https://www.uniprot.org/uniprotkb/F1SGI7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 310, "end_pos": 312, "annotation": "n_glycosylation_sequon" }, { "start_pos": 331, "end_pos": 333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 470, "end_pos": 472, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGI7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 550, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGI7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGI7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGI7" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 148, "end_pos": 461, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 212, "end_pos": 214 }, { "start_pos": 310, "end_pos": 312 }, { "start_pos": 331, "end_pos": 333 }, { "start_pos": 470, "end_pos": 472 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFI3-1", "uniprot_ac": "F1SFI3", "uniprot_id": "F1SFI3_PIG", "mass": { "chemical_mass": 39899.0, "monoisotopic_mass": 39899.0 }, "refseq": { "ac": "XP_005652428", "name": "replication factor C subunit 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652428" }, "gene_names": [ { "name": "RFC4", "type": "recommended", "evidence": [ { "id": "F1SFI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ] }, { "name": "RFC4", "type": "synonym", "evidence": [ { "id": "XP_005652428", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652428" } ] } ], "protein_names": [ { "name": "Replication factor C subunit 4", "type": "recommended", "evidence": [ { "id": "F1SFI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFI3/entry#names_and_taxonomy" } ] }, { "name": "Activator 1 subunit 4", "type": "synonym", "evidence": [ { "id": "F1SFI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFI3/entry#names_and_taxonomy" } ] }, { "name": "replication factor C subunit 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005652428", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652428" } ] } ], "function": [ { "annotation": "Subunit of the replication factor C (RFC) complex which acts during elongation of primed DNA templates by DNA polymerases delta and epsilon, and is necessary for ATP-dependent loading of proliferating cell nuclear antigen (PCNA) onto primed DNA. The RFC4 subunit probably functions as a scaffold on which the other complex components can assemble.", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3#function" }, { "database": "UniProtKB", "id": "ARBA00059035", "url": "https://www.uniprot.org/uniprotkb/ARBA00059035#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RFC4", "url": "https://www.uniprot.org/uniprotkb/F1SFI3", "locus": { "chromosome": "13", "start_pos": 124589295, "end_pos": 124604426, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011804", "url": "https://www.ensembl.org/id/ENSSSCG00000011804" } ] } } ], "crossref": [ { "id": "F1SFI3", "url": "https://alphafold.ebi.ac.uk/entry/F1SFI3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011804", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011804", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00009", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00009", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18140", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18140", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106504063", "url": "https://www.ncbi.nlm.nih.gov/gene/106504063", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003959", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003959", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047854", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047854", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050238", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050238", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504063", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504063", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GATKYIQ", "url": "https://omabrowser.org/oma/group/GATKYIQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFI3", "url": "https://www.orthodb.org/?gene=F1SFI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11669", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11669", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11669:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11669:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08542", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08542", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21960", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21960", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110312", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110312", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-110314", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110314", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-110320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174411", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174411", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-176187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5651801", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5651801", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5655862", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5655862", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5656121", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656121", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5656169", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656169", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5685938", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5685942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693537", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693537", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693607", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5696397", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696397", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5696400", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696400", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782210", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782210", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69091", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69091", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69473", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005652428", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652428", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AQT0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFI3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQAFLKGTSISTKPPLTKDRGVAATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTETIDGVLAACQSGSFDKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKSVITEKLAEADKCLADGADEHLQLISLCATVMQQLTQNC", "length": 364, "header": "tr|F1SFI3-1|F1SFI3_PIG Isoform 1 of Replication factor C subunit 4 OS=Sus scrofa OX=9823 GN=RFC4 PE=1 SV=3 CANONICAL=F1SFI3-1" }, "isoforms": [ { "isoform_ac": "A0A287AQT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFI3/entry#A0A287AQT0-1", "sequence": { "sequence": "MQAFLKGTSISTKPPLTKDRGVAATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTETIDGVLAACQSGSFDKLEAVVKVNLLD", "length": 299, "header": "tr|A0A287AQT0-1|F1SFI3_PIG Computationally mapped isoform of Replication factor C subunit 4 OS=Sus scrofa OX=9823 GN=RFC4 PE=1 SV=1 CANONICAL=F1SFI3-1" }, "locus": { "chromosome": "13", "start_pos": 124602891, "end_pos": 124589703, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055596.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055596.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046230.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046230.1" } ] } }, { "isoform_ac": "F1SFI3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFI3/entry#F1SFI3-1", "sequence": { "sequence": "MQAFLKGTSISTKPPLTKDRGVAATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVVPTETIDGVLAACQSGSFDKLEAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKSVITEKLAEADKCLADGADEHLQLISLCATVMQQLTQNC", "length": 364, "header": "tr|F1SFI3-1|F1SFI3_PIG Isoform 1 of Replication factor C subunit 4 OS=Sus scrofa OX=9823 GN=RFC4 PE=1 SV=3 CANONICAL=F1SFI3-1" }, "locus": { "chromosome": "13", "start_pos": 124602891, "end_pos": 124589359, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012916.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012916.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012575.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012575.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQT0", "url": "https://www.uniprot.org/uniprotkb/A0A287AQT0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504063", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504063", "resource": "KEGG Pathway" }, { "id": "R-SSC-110312", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110312", "resource": "Reactome", "description": "Translesion synthesis by REV1" }, { "id": "R-SSC-110314", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110314", "resource": "Reactome", "description": "Recognition of DNA damage by PCNA-containing replication complex" }, { "id": "R-SSC-110320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110320", "resource": "Reactome", "description": "Translesion Synthesis by POLH" }, { "id": "R-SSC-174411", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174411", "resource": "Reactome", "description": "Polymerase switching on the C-strand of the telomere" }, { "id": "R-SSC-176187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "resource": "Reactome", "description": "Activation of ATR in response to replication stress" }, { "id": "R-SSC-5651801", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5651801", "resource": "Reactome", "description": "PCNA-Dependent Long Patch Base Excision Repair" }, { "id": "R-SSC-5655862", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5655862", "resource": "Reactome", "description": "Translesion synthesis by POLK" }, { "id": "R-SSC-5656121", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656121", "resource": "Reactome", "description": "Translesion synthesis by POLI" }, { "id": "R-SSC-5656169", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656169", "resource": "Reactome", "description": "Termination of translesion DNA synthesis" }, { "id": "R-SSC-5685938", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "resource": "Reactome", "description": "HDR through Single Strand Annealing (SSA)" }, { "id": "R-SSC-5685942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685942", "resource": "Reactome", "description": "HDR through Homologous Recombination (HRR)" }, { "id": "R-SSC-5693537", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693537", "resource": "Reactome", "description": "Resolution of D-Loop Structures" }, { "id": "R-SSC-5693607", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "resource": "Reactome", "description": "Processing of DNA double-strand break ends" }, { "id": "R-SSC-5696397", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696397", "resource": "Reactome", "description": "Gap-filling DNA repair synthesis and ligation in GG-NER" }, { "id": "R-SSC-5696400", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696400", "resource": "Reactome", "description": "Dual Incision in GG-NER" }, { "id": "R-SSC-6782135", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782135", "resource": "Reactome", "description": "Dual incision in TC-NER" }, { "id": "R-SSC-6782210", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782210", "resource": "Reactome", "description": "Gap-filling DNA repair synthesis and ligation in TC-NER" }, { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" }, { "id": "R-SSC-69091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69091", "resource": "Reactome", "description": "Polymerase switching" }, { "id": "R-SSC-69473", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "resource": "Reactome", "description": "G2/M DNA damage checkpoint" } ], "orthologs": [ { "uniprot_canonical_ac": "P40348-1", "protein_name": "Replication factor C subunit 2", "gene_name": "RFC2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MFEGFGPNKKRKISKLAAEQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQL", "length": 353 }, "evidence": [ { "id": "F1SFI3", "url": "https://omabrowser.org/oma/group/F1SFI3/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "DNA clamp loader activity", "id": "GO:0003689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003689", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "single-stranded DNA helicase activity", "id": "GO:0017116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017116", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "Ctf18 RFC-like complex", "id": "GO:0031390", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031390", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "Elg1 RFC-like complex", "id": "GO:0031391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031391", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "DNA replication factor C complex", "id": "GO:0005663", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005663", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA replication", "id": "GO:0006260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006260", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" }, { "name": "DNA-templated DNA replication", "id": "GO:0006261", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006261", "evidence": [ { "database": "UniProtKB", "id": "F1SFI3", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFI3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFI3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFI3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFI3" }, { "id": "SM00382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAA+ ATPase", "eco_id": "ECO_0000259", "start_pos": 70, "end_pos": 202, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 319, "end_pos": 321 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG45-1", "uniprot_ac": "F1SG45", "uniprot_id": "F1SG45_PIG", "mass": { "chemical_mass": 57552.0, "monoisotopic_mass": 57552.0 }, "refseq": { "ac": "XP_020926684", "name": "glucose-6-phosphate exchanger SLC37A1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926684" }, "gene_names": [ { "name": "SLC37A1", "type": "recommended", "evidence": [ { "id": "F1SG45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG45" } ] }, { "name": "SLC37A1", "type": "synonym", "evidence": [ { "id": "XP_020926684", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926684" } ] } ], "protein_names": [ { "name": "Solute carrier family 37 member 1", "type": "synonym", "evidence": [ { "id": "F1SG45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG45/entry#names_and_taxonomy" } ] }, { "name": "glucose-6-phosphate exchanger SLC37A1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020926684", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926684" } ] } ], "function": [ { "annotation": "Inorganic phosphate and glucose-6-phosphate antiporter. May transport cytoplasmic glucose-6-phosphate into the lumen of the endoplasmic reticulum and translocate inorganic phosphate into the opposite direction. Independent of a lumenal glucose-6-phosphatase. May not play a role in homeostatic regulation of blood glucose levels.", "evidence": [ { "database": "UniProtKB", "id": "F1SG45", "url": "https://www.uniprot.org/uniprotkb/F1SG45#function" }, { "database": "UniProtKB", "id": "ARBA00024304", "url": "https://www.uniprot.org/uniprotkb/ARBA00024304#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG45", "url": "https://www.uniprot.org/uniprotkb/F1SG45" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC37A1", "url": "https://www.uniprot.org/uniprotkb/F1SG45", "locus": { "chromosome": "13", "start_pos": 205898586, "end_pos": 205843095, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012087", "url": "https://www.ensembl.org/id/ENSSSCG00000012087" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012087", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012087", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17344", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17344", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519174", "url": "https://www.ncbi.nlm.nih.gov/gene/100519174", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044740", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044740", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519174", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519174", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WRIQIFA", "url": "https://omabrowser.org/oma/group/WRIQIFA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SG45", "url": "https://www.orthodb.org/?gene=F1SG45", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43184:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43184:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70263", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70263", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020926684", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926684", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "71535", "url": "https://www.rhea-db.org/rhea/71535", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AQZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AQZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AQZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AQZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG45", "url": "https://www.uniprot.org/uniprotkb/F1SG45", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG45-1", "url": "https://www.uniprot.org/uniprotkb/F1SG45-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARLPPGIRFIVSFSRDQWYRAFVFILTFLLYASFHLSRKPISIVKGELHKYCTASNEAEVRFNGQSQKTSDTPAHQLPDNETNCGWAPFDQDNYQQLLGALDYAFLCAYAVGMYLSGIIGERLPVRYYLTCGMLASGAFTALFGFGYFYSIHSFGFYVVTQIVNGLVQTTGWPSVVTCLSNWFGKGRRGLIMGVWNSHTSVGNILGSLIAGYWVSTCWGLSFIVPGAVVAAMGLVCFLFLIEHPRDIACSSSLAMHPKGYENGTHRFRLQKQILTEEKNKPLDPETQCLLLSDGKRSGHQNHVVVLPDGGSGVAAISFMGALKIPGVVEFSLCLLFAKLVSYTFLFWLPLYITNVDHLDVKKAGELSTLFDVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYVFSAVSRIGLEATIVMLLLSGALVSGPYALITTAVSADLGTHKSLKGNSHALATVTAIIDGTGSVGAALGPLLAGLISPSGWHNVFSMLMLADACALLFLVRLIHKELCCPGSATGDQIPFKEH", "length": 532, "header": "tr|F1SG45-1|F1SG45_PIG Isoform 1 of Solute carrier family 37 member 1 OS=Sus scrofa OX=9823 GN=SLC37A1 PE=3 SV=1 CANONICAL=F1SG45-1" }, "isoforms": [ { "isoform_ac": "A0A287AQZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SG45/entry#A0A287AQZ2-1", "sequence": { "sequence": "MARLPPGIRFIVSFSRDQWYRAFVFILTFLLYASFHLSRKPISIVKGELHKYCTASNEAEVRFNGQSQKTSDTPAHQLPDNETNCGWAPFDQDNYQQLLGALDYAFLCAYAVGMYLSGIIGERLPVRYYLTCGMLASGAFTALFGFGYFYSIHSFGFYVVTQIVNGLVQTTGWPSVVTCLSNWFGKGRRGLIMGVWNSHTSVGNILGSLIAGYWVSTCWGLSFIVPGAVVAAMGLVCFLFLIEHPRDIACSSSLAMHPKGYENGTHRFRLQKQILTEEKNKPLDPETQCLLLSDGKRSGHQNHVVVLPDGGSGVAAISFMGALKIPGVVEFSLCLLFAKLVSYTFLFWLPLYITNVDHLDVKKAGELSTLFDVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYVFSAVSRIGLEATIVMLLLSGALVSGPYALITTAVSADLGTHKSLKGNSHALATVTAIIDGTGSVADAQDARCSGVIGIGRPS", "length": 491, "header": "tr|A0A287AQZ2-1|F1SG45_PIG Computationally mapped isoform of Solute carrier family 37 member 1 OS=Sus scrofa OX=9823 GN=SLC37A1 PE=3 SV=1 CANONICAL=F1SG45-1" }, "locus": { "chromosome": "13", "start_pos": 205887852, "end_pos": 205848151, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047526.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047526.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046326.2", "url": "https://www.ensembl.org/id/ENSSSCP00000046326.2" } ] } }, { "isoform_ac": "F1SG45-1", "url": "https://www.uniprot.org/uniprotkb/F1SG45/entry#F1SG45-1", "sequence": { "sequence": "MARLPPGIRFIVSFSRDQWYRAFVFILTFLLYASFHLSRKPISIVKGELHKYCTASNEAEVRFNGQSQKTSDTPAHQLPDNETNCGWAPFDQDNYQQLLGALDYAFLCAYAVGMYLSGIIGERLPVRYYLTCGMLASGAFTALFGFGYFYSIHSFGFYVVTQIVNGLVQTTGWPSVVTCLSNWFGKGRRGLIMGVWNSHTSVGNILGSLIAGYWVSTCWGLSFIVPGAVVAAMGLVCFLFLIEHPRDIACSSSLAMHPKGYENGTHRFRLQKQILTEEKNKPLDPETQCLLLSDGKRSGHQNHVVVLPDGGSGVAAISFMGALKIPGVVEFSLCLLFAKLVSYTFLFWLPLYITNVDHLDVKKAGELSTLFDVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYVFSAVSRIGLEATIVMLLLSGALVSGPYALITTAVSADLGTHKSLKGNSHALATVTAIIDGTGSVGAALGPLLAGLISPSGWHNVFSMLMLADACALLFLVRLIHKELCCPGSATGDQIPFKEH", "length": 532, "header": "tr|F1SG45-1|F1SG45_PIG Isoform 1 of Solute carrier family 37 member 1 OS=Sus scrofa OX=9823 GN=SLC37A1 PE=3 SV=1 CANONICAL=F1SG45-1" }, "locus": { "chromosome": "13", "start_pos": 205897647, "end_pos": 205848151, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013221.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013221.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012869.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012869.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AQZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AQZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519174", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519174", "resource": "KEGG Pathway" }, { "id": "R-SSC-70263", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70263", "resource": "Reactome", "description": "Gluconeogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MK24-1", "protein_name": "Glucose-6-phosphate exchanger SLC37A1", "gene_name": "Slc37a1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARLPVGIRFIISFSRDQWYRAFIFMLTFLLYASFHLSRKPISIVKGELHKQCAAGDEPEPRFGGPSSSTRHGPTHWLLNNETDCGWAPFDKNNYQQLLGALDYSFLCAYAIGMYLSGIIGERLPIRYYLTFGMLASGAFTALFGLGYFYNIHSLGFYVVTQIINGLVQTTGWPSVVTCLSNWFGKGRRGLIMGIWNSHTSVGNILGSLIAGYWVSTCWGLSFIVPGAIVAAMGIVCFLFLIEHPKDIKCSSTLPTHSKISENGMNRFRLQKQTTHTEKNGPLDPERQCLLLSDGKSSLHPSHIVVLPSDSSGSMAAISFTGALRIPGVIEFSLCLLFAKLVSYTFLFWLPLYITNVDHLDAKQAGELSTLFDVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYVFSSVSKMGLEATIAMLLLSGALVSGPYALITTAVSADLGTHKSLKGNSHALSTVTAIIDGTGSVGAALGPLLAGFISPSGWSNVFYMLMFADACALLFLIRLIHKELSCPGPTAGIQAPLKEH", "length": 533 }, "evidence": [ { "id": "F1SG45", "url": "https://omabrowser.org/oma/group/F1SG45/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0Y8I5-1", "protein_name": "Solute carrier family 37 member 1", "gene_name": "SLC37A1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAQLPPGIRFITSFSRDQWYRAFIFTLTFFLYASFHLSRKPISIVKGELHKHCAASHGVELGSYREYAAQIQSVRKLSNASQCGWEPFDKNNYKQLLGALDYSFLCAYAIGMYLSGIIGERLPIRYYLTVGMLASGLFTAMFGLGYFCNIHNLWFYIMAQIANGLVQTTGWPSVVTCIGNWFGKGRRGLIMGIWNSHTSVGNILGSLIAAYWVSTCWGLSFVMPGVIIAVMGIVCFLFLIEHPKDISCSCTPSSSSKAFLNGASRFRVQMPTLNAKETIKSQDPEMQHLLIDSENSVTSQNSSTVGTGEGRHGTSAISFLGALRIPGVIEFSLCLLFAKLVSYTFLFWLPLYITNVEHLDAKRAGDLSTLFDVGGIFGGILAGLISDRLEKRASTCGMMLLLAAPTLYMFSTVSKMGLEATVVMLLISGALVNGPYALITTAVSADLGTHKSLKGNARALSTVTAIIDGTGSVGAALGPLLAGLISPSGWNNVFYMLMVADGCALLFLLHLIQKELRCNADHTLNTELRDQIWNKDCVSDQSSSLKKTLMECITLYVRGFVR", "length": 562 }, "evidence": [ { "id": "F1SG45", "url": "https://omabrowser.org/oma/group/F1SG45/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O23596-1", "protein_name": "Putative glycerol-3-phosphate transporter 4", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAMNSKRKTPPGIALLRRVRGRNWSPKTFRYAILFITFIAYACYHASRKPSSIVKSVLHPDSSTKPPQEHNSDKIYPWPMGNVFVKREIGDIDEVLLHRKSKGWEPFNGKDGTSRLGEIDVAFLACYSIGMYVAGHLGDSLDLRLFLTWGMIGSGFFVGLFGMGYFWNIHAFWFFLVMQMAAGLFQATGWPSVVAVVGNWFGKRKRGLIMGIWNAHTSVGNICGSLIAAGVLEYGWGWSFIAPGFVMSLGGVLVYLFLAAYPEDVGFPDINSNSGKFIKRKRDVEEEEEEVEEDLGTDVEGDGEGSSGSGSGYENKRSVGLLQACMIPGVIPFALCLFFSKLVAYTFLYWLPFYLSQTTIGGEYVSVKTAGNLSTLFDVGGIVGGILCGYISDKFKARATTAAAFMYAAIPAMLVYHSYGGVSQTVNILLMMVAGLFVNGPYALITTAVSADLGTHKSLQGDSRALATVTAIIDGTGSAGAALGPLLTGFLSTLGWQAVFYMLVVGALCAGLLLTRLVIAEIREKLGYVDEEVPASEPLLTDRR", "length": 544 }, "evidence": [ { "id": "F1SG45", "url": "https://omabrowser.org/oma/group/F1SG45/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8R070-1", "protein_name": "Glucose-6-phosphate exchanger SLC37A1", "gene_name": "Slc37a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALLPVGIRFIISFSRDQWYRAFIFMLTFLLYASFHLSRKPISIVKGELHKQCTAGDGPESPFSDPSSSTRHGPTHWLLNNETDCGWAPFDKNNYQQLLGALDYAFLCAYAIGMYLSGIIGERLPIRYYLTFGMLASGAFTALFGLGYFYNIHSLGFYVVTQIINGLVQTTGWPSVVTCLSNWFGKGRRGLIMGIWNSHTSVGNILGSLIAGYWVSTCWGLSFIVPGAIVAAMGIVCFLFLIEHPKDVKCSSTLPTHPRASENGINRFRLQKQTTYSEKNGPLDPELQCLLLSDGKNPLHPSHIVVLPADGNMAAISFTGALRIPGVIEFSLCLLFAKLVSYTFLFWLPLYITSVDHLDAKKAGELSTLFDVGGIFGGILAGVISDRLEKRASTCGLMLLLAAPTLYVFSSVSRMGLEATIAMLLLSGALVSGPYALITTAVSADLGTHKSLKGNSHALSTVTAIIDGTGSVGAALGPLLAGLISPSGWSNVFYMLMFADACALLFLVRLIHKELSCPGPAAGIQAPLKEH", "length": 531 }, "evidence": [ { "id": "F1SG45", "url": "https://omabrowser.org/oma/group/F1SG45/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1SG45", "url": "https://www.uniprot.org/uniprotkb/F1SG45" } ], "pmid": "" }, { "name": "glucose 6-phosphate:phosphate antiporter activity", "id": "GO:0061513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061513", "evidence": [ { "database": "UniProtKB", "id": "F1SG45", "url": "https://www.uniprot.org/uniprotkb/F1SG45" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "organelle membrane", "id": "GO:0031090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031090", "evidence": [ { "database": "UniProtKB", "id": "F1SG45", "url": "https://www.uniprot.org/uniprotkb/F1SG45" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SG45", "url": "https://www.uniprot.org/uniprotkb/F1SG45" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "glucose-6-phosphate transport", "id": "GO:0015760", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015760", "evidence": [ { "database": "UniProtKB", "id": "F1SG45", "url": "https://www.uniprot.org/uniprotkb/F1SG45" } ], "pmid": "" }, { "name": "phosphate ion transmembrane transport", "id": "GO:0035435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035435", "evidence": [ { "database": "UniProtKB", "id": "F1SG45", "url": "https://www.uniprot.org/uniprotkb/F1SG45" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "71535", "name": "", "equation": "D-glucose 6-phosphate(in) + phosphate(out) = D-glucose 6-phosphate(out) + phosphate(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71535", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71535" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG45", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG45" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 516, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 263, "end_pos": 265 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMX5-1", "uniprot_ac": "F1SMX5", "uniprot_id": "F1SMX5_PIG", "mass": { "chemical_mass": 39927.0, "monoisotopic_mass": 39927.0 }, "refseq": { "ac": "XP_020931392", "name": "calcium-binding protein 39", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931392" }, "gene_names": [ { "name": "CAB39", "type": "recommended", "evidence": [ { "id": "F1SMX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMX5" } ] }, { "name": "CAB39", "type": "synonym", "evidence": [ { "id": "XP_020931392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931392" } ] } ], "protein_names": [ { "name": "Calcium binding protein 39", "type": "synonym", "evidence": [ { "id": "F1SMX5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMX5/entry#names_and_taxonomy" } ] }, { "name": "calcium-binding protein 39", "type": "synonym", "evidence": [ { "id": "XP_020931392", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931392" } ] } ], "function": [ { "annotation": "Component of a complex that binds and activates STK11/LKB1. In the complex, required to stabilize the interaction between CAB39/MO25 (CAB39/MO25alpha or CAB39L/MO25beta) and STK11/LKB1.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ3#function" }, { "database": "UniProtKB", "id": "ARBA00025206", "url": "https://www.uniprot.org/uniprotkb/ARBA00025206#function" }, { "database": "UniProtKB", "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAB39", "url": "https://www.uniprot.org/uniprotkb/F1SMX5", "locus": { "chromosome": "15", "start_pos": 131584962, "end_pos": 131492578, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016266", "url": "https://www.ensembl.org/id/ENSSSCG00000016266" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016266", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016266", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100620726", "url": "https://www.ncbi.nlm.nih.gov/gene/100620726", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620726", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620726", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AYDHKES", "url": "https://omabrowser.org/oma/group/AYDHKES/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMX5", "url": "https://www.orthodb.org/?gene=F1SMX5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10182:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10182:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-380972", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380972", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020931392", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931392", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AUZ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMX5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMX5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPFPFGKSHKSPADIVRNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341, "header": "tr|F1SMX5-1|F1SMX5_PIG Isoform 1 of Calcium binding protein 39 OS=Sus scrofa OX=9823 GN=CAB39 PE=1 SV=1 CANONICAL=F1SMX5-1" }, "isoforms": [ { "isoform_ac": "A0A287AUZ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SMX5/entry#A0A287AUZ3-1", "sequence": { "sequence": "MVCKSPSRTLEGRGHKDATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 320, "header": "tr|A0A287AUZ3-1|F1SMX5_PIG Computationally mapped isoform of Calcium binding protein 39 OS=Sus scrofa OX=9823 GN=CAB39 PE=1 SV=1 CANONICAL=F1SMX5-1" }, "locus": { "chromosome": "15", "start_pos": 131582558, "end_pos": 131549511, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060071.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060071.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047747.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047747.2" } ] } }, { "isoform_ac": "F1SMX5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMX5/entry#F1SMX5-1", "sequence": { "sequence": "MPFPFGKSHKSPADIVRNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341, "header": "tr|F1SMX5-1|F1SMX5_PIG Isoform 1 of Calcium binding protein 39 OS=Sus scrofa OX=9823 GN=CAB39 PE=1 SV=1 CANONICAL=F1SMX5-1" }, "locus": { "chromosome": "15", "start_pos": 131582558, "end_pos": 131532193, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017712.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017712.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017231.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017231.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUZ3", "url": "https://www.uniprot.org/uniprotkb/A0A287AUZ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620726", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620726", "resource": "KEGG Pathway" }, { "id": "R-SSC-380972", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380972", "resource": "Reactome", "description": "Energy dependent regulation of mTOR by LKB1-AMPK" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MYG4-1", "protein_name": "Calcium-binding protein 39", "gene_name": "Cab39", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341 }, "evidence": [ { "id": "F1SMX5", "url": "https://omabrowser.org/oma/group/F1SMX5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "C7G028-1", "protein_name": "Mo25-like family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNIFFNKKQKTPSELVKSIKESLASMDKSGPNSKSTEKASEEISKCLQEIKKILHGDSEHEPNQEVVAVLSNEICTSDLVQILIKDLNKLEFEAKKDVAQIFNILLRHKNGARSPIVEYIAKNPEILDSLVKGYEQQDIALNCGTMLRECIKHESLAKILIYSPNFWEFFEFVEVSNFDVASDTFATFKEILTKHKTLSAEFLEKNYDQVFEKYTTLLNSQNYVTRRQSIKVNNNSNNNNNNNNNNNNNNNNNNNNNAAILLGELLLDRSNFNIMPLYISSAANLKFMMNLLRDKSKSIQYEAFHVFKVFVANPNKTKPILEILTKNKEKLIAFLSQFHNDKEEDQFSDEKNFLVKQIQAIQG", "length": 363 }, "evidence": [ { "id": "F1SMX5", "url": "https://omabrowser.org/oma/group/F1SMX5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "D3ZJ77-1", "protein_name": "Calcium binding protein 39", "gene_name": "Cab39", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRAAQQEA", "length": 341 }, "evidence": [ { "id": "F1SMX5", "url": "https://omabrowser.org/oma/group/F1SMX5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P32464-1", "protein_name": "Protein HYM1", "gene_name": "HYM1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MFKKYKNQDLDMAFWWKKNPKTPSDYARLIIEQLNKFSSPSLTQDNKRKVQEECTKYLIGTKHFIVGDTDPHPTPEAIDELYTAMHRADVFYELLLHFVDLEFEARRECMLIFSICLGYSKDNKFVTVDYLVSQPKTISLMLRTAEVALQQKGCQDIFLTVGNMIIECIKYEQLCRIILKDPQLWKFFEFAKLGNFEISTESLQILSAAFTAHPKLVSKEFFSNEINIIRFIKCINKLMAHGSYVTKRQSTKLLASLIVIRSNNALMNIYINSPENLKLIMTLMTDKSKNLQLEAFNVFKVMVANPRKSKPVFDILVKNRDKLLTYFKTFGLDSQDSTFLDEREFIVQEIDSLPRIISSTTEVSNNNASSSNVASITSPSSVMNNQSSILTHSTSPDSR", "length": 399 }, "evidence": [ { "id": "F1SMX5", "url": "https://omabrowser.org/oma/group/F1SMX5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P91891-1", "protein_name": "Protein Mo25", "gene_name": "Mo25", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPLFGKSQKSPVELVKSLKEAINALEAGDRKVEKAQEDVSKNLVSIKNMLYGSSDAEPPADYVVAQLSQELYNSNLLLLLIQNLHRIDFEGKKHVALIFNNVLRRQIGTRSPTVEYICTKPEILFTLMAGYEDAHPEIALNSGTMLRECARYEALAKIMLHSDEFFKFFRYVEVSTFDIASDAFSTFKELLTRHKLLCAEFLDANYDKFFSQHYQRLLNSENYVTRRQSLKLLGELLLDRHNFTVMTRYISEPENLKLMMNMLKEKSRNIQFEAFHVFKVFVANPNKPKPILDILLRNQTKLVDFLTNFHTDRSEDEQFNDEKAYLIKQIKELKPLPEA", "length": 339 }, "evidence": [ { "id": "F1SMX5", "url": "https://omabrowser.org/oma/group/F1SMX5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q06138-1", "protein_name": "Calcium-binding protein 39", "gene_name": "Cab39", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLGTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRAAQQEA", "length": 341 }, "evidence": [ { "id": "F1SMX5", "url": "https://omabrowser.org/oma/group/F1SMX5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q29RI6-1", "protein_name": "Calcium-binding protein 39", "gene_name": "CAB39", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341 }, "evidence": [ { "id": "F1SMX5", "url": "https://omabrowser.org/oma/group/F1SMX5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9Y376-1", "protein_name": "Calcium-binding protein 39", "gene_name": "CAB39", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341 }, "evidence": [ { "id": "F1SMX5", "url": "https://omabrowser.org/oma/group/F1SMX5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "R4GI86-1", "protein_name": "Calcium binding protein 39", "gene_name": "CAB39", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA", "length": 341 }, "evidence": [ { "id": "F1SMX5", "url": "https://omabrowser.org/oma/group/F1SMX5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cellular hypotonic response", "id": "GO:0071476", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071476", "evidence": [ { "database": "UniProtKB", "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5" } ], "pmid": "" }, { "name": "negative regulation of potassium ion transmembrane transport", "id": "GO:1901380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901380", "evidence": [ { "database": "UniProtKB", "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "serine/threonine protein kinase complex", "id": "GO:1902554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902554", "evidence": [ { "database": "UniProtKB", "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein serine/threonine kinase activator activity", "id": "GO:0043539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043539", "evidence": [ { "database": "UniProtKB", "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5" } ], "pmid": "" }, { "name": "protein serine/threonine kinase binding", "id": "GO:0120283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120283", "evidence": [ { "database": "UniProtKB", "id": "F1SMX5", "url": "https://www.uniprot.org/uniprotkb/F1SMX5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 242, "end_pos": 244 }, { "start_pos": 286, "end_pos": 288 }, { "start_pos": 298, "end_pos": 300 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNP7-1", "uniprot_ac": "F1SNP7", "uniprot_id": "F1SNP7_PIG", "mass": { "chemical_mass": 247364.0, "monoisotopic_mass": 247364.0 }, "refseq": {}, "gene_names": [ { "name": "DOCK10", "type": "recommended", "evidence": [ { "id": "F1SNP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ] } ], "protein_names": [ { "name": "Dedicator of cytokinesis 10", "type": "synonym", "evidence": [ { "id": "F1SNP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNP7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DOCK10", "url": "https://www.uniprot.org/uniprotkb/F1SNP7", "locus": { "chromosome": "15", "start_pos": 126435579, "end_pos": 126711531, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016237", "url": "https://www.ensembl.org/id/ENSSSCG00000016237" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016237", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016237", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08697", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08697", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11699", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11699", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13267", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13267", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027007", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027007", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037809", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037809", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23317", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23317", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23317:SF71", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23317:SF71", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06920", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06920", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11878", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11878", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20421", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20421", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20422", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20422", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013148", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013404", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AV77", "url": "https://www.uniprot.org/uniprotkb/A0A287AV77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AV77-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AV77-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SNP7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LU05", "url": "https://www.uniprot.org/uniprotkb/I3LU05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LU05-1", "url": "https://www.uniprot.org/uniprotkb/I3LU05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGCTASIVLLQAFRSVVQRSCPHICRRRQEEPSHEILPLESDDEMSRPRTLIIMQEKPRLLEPLDYETVVEELEKTYQNDPLRDLLFFPRDDFSTTTVPWDIRTLYSTVPEDAEHKAENLLVKEACKFYSSQWYVVNYKYEQYSGDIRQLPRAEYKPEKLPSHSFEVDHEDADKDEDTTSHSSSKGGGGAGGTGVFKSGWLYKGNFNSTVNNTVTVRSFKKRFFQLTQLPDNSYIMNFYKDEKISKEPKGCIFLDSCTGVVQNNRLRKYAFELKMNDLTYFVLAAETESDMDEWIHTLNRILQISPEGPPQGRRSTELADLGLDSLDNSITCECTPEETDSSENSLHPDFTKYLTETEESVKTTRNIERLNLFSLDPDIDSLKLQKKDLLEPDFVIKPFEEKAAKRIMIICKALNLNLQGCVTENENDPITNIEPFFVSVALYDLRDSRKISADFHVDLNHTAVRQMISGASVALENGNIDAVTPRQSEEPHIKGFPEEWLKFPKQAIFSVSNPHSEIVLVAKIEKVLMGNIASGAEPYIKNPDSNKYAQKILKSNRQFCSKLGKYRMPFAWAVRSVFKDNQGNVDRDSRFSPLYRQESSKISTEDLLKLVSDYRRADRISKTQTIPGSLDIAVDNIPLEHPNCVTSSFIPVKPFNVVAPPEPTVEVEEFVYDSTKYCRPYRVYKNQIYVYPKHLKYDSQRCFSKARNITVCIEFKNSDEEDAKPVKCIYGKPGGPLFTSAAYTAVLHHSQNPDFSDEVKIELPTQLHEKHHILFSFYHITCDINAKANAKKKEALETPVGYAWLPLMKHDQIASQEYSIPVATSLPPNYLSFQDSSSGKHGGSDIKWVDGGKPLFKVSTFVVSTVNTQDPHVNEFFRQCQKREKDMSQSPTSNFVRSCKNLLNVEKIHTIMSFLPIILNQLFKVLVQNEEDEINTAVTRVLTDIMAKCHEEQLDHSVQSYIKFVFKTTACKERTIHEELAKNVTGLLKSNDFPTVKHVLKHSWFFFAIILKSMAQHLIDTNKIQLSRPQRFPESYQNELDNLVMVLSDHVTWKNKDALEETRRANHSVARFLKRCFTFMDRGFVFKMVNNYISMFSSGDPKILCQFKFDFLQEVCQHEHFIPLCLPIRSANIPDPLTPSESIQELHASDMPEYSITNEFCRKHFLIGILLREVGFALQEDQDVRHLALAVLKNLMAKHSFDDRYREPAKQAQIASLYMPLYGMLLDNMPRIYLKDLYPFTINTSNQGSRDDLSTNGGFQAQSAMKHANSVDTSFSKDVLNSIAAFSSIAISTVNHADSRASLASLDSNPSTNEKSSEKTDNCEKIPRPLSLIGSTLRFDKLDQAETRSLLMCFLHIMKTISEETLIAYWQRAPSPEVSDFFSILEVCLQNFRYLGKRNIIRKIAAAFKFVQSTQNNGTLKGSNPSCQTSGLLPQWMHTTSSHESQKQHRSQTLPIIRGKNALSNPKLLQMLDNTMTRQLQQSECQNSTMKRVFDTYMLFFQVNQSATALKHVFASLRLFVCKFPSAFFQGPADLCGSFCYEVLKCCNHRSRSTQTEASALLYFFMRKNFEFNKQKSIVRSHLQLIKAVSQLIADAGIGGSRFQHSLAITNNFANGDKQMKNSNFPAEVKDLTKRIRTVLMATAQMKEHEKDPEMLVDLQYSLANSYASTPELRRTWLESMAKIHARNGDLSEAAMCYIHIAALIAEYLKRRGYWKMEKLCTPSQLPEDIHPCDSNPLLTSPRGGSMFSMGWPAFLSITPNIKEEGAMKEDSGMQDTPYNENILVEQLYMCVEFLWKSERYELIADVNKPIIAVFEKQRDFKKLSDLYYDIHRSYLKVAEVVNSEKRLFGRYYRVAFYGQGFFEEEEGKEYIYKEPKLTGLSEISQRLLKLYADKFGADNVKIIQDSNKVNPKDLDPKYAYIQVTYVTPFFEEKELEDRKTDFEMHHNINRFVFETPFTLSGKKHGGVEEQCKRRTVLTTSHLFPYVKKRIQVISQSSTELNPIEVAIDEMSKKVSELNQLCTMEEVDMIRLQLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDNQVKLLKEIFRQFADACGQALDVNERLIKEDQLEYQEELRSHYKDMLSELSAIMNEQITYPDDPSKRGAERTCTRVSNKAAPTLPTVSISSSAEA", "length": 2161, "header": "tr|F1SNP7-1|F1SNP7_PIG Isoform 1 of Dedicator of cytokinesis 10 OS=Sus scrofa OX=9823 GN=DOCK10 PE=3 SV=5 CANONICAL=F1SNP7-1" }, "isoforms": [ { "isoform_ac": "A0A287AV77-1", "url": "https://www.uniprot.org/uniprotkb/F1SNP7/entry#A0A287AV77-1", "sequence": { "sequence": "MSFRGKVFKRDPSEFWKKRRTVRRKNQEEIHRFSSQEKPRLLEPLDYETVVEELEKTYQNDPLRDLLFFPRDDFSTTTVPWDIRTLYSTVPEDAEHKAENLLVKEACKFYSSQWYVVNYKYEQYSGDIRQLPRAEYKPEKLPSHSFEVDHEDADKDEDTTSHSSSKGGGGAGGTGVFKSGWLYKGNFNSTVNNTVTVRSFKKRFFQLTQLPDNSYIMNFYKDEKISKEPKGCIFLDSCTGVVQNNRLRKYAFELKMNDLTYFVLAAETESDMDEWIHTLNRILQISPEGPPQGRRSTELADLGLDSLDNSITCECTPEETDSSENSLHPDFTKTRNIERLNLFSLDPDIDSLKLQKKDLLEPDFVIKPFEEKAAKRIMIICKALNLNLQGCVTENENDPITNIEPFFVSVDLNHTAVRQMISGASVALENGNIDAVTPRQSEEPHIKGFPEEWLKFPKQAIFSVSNPHSEIVLVAKIEKVLMGNIASGAEPYIKNPDSNKYAQKILKSNRQFCSKLGKYRMPFAWAVRSVFKDNQGNVDRDSRFSPLYRQESSKISTEDLLKLVSDYRRADRISKTQTIPGSLDIAVDNIPLEHPNCVTSSFIPVKPFNVVAPPEPTVEVEEFVYDSTKYCRPYRVYKNQIYVYPKHLKYDSQRCFSKARNITVCIEFKNSDEEDAKPVKCIYGKPGGPLFTSAAYTAVLHHSQNPDFSDEVKIELPTQLHEKHHILFSFYHITCDINAKANAKKKEALETPVGYAWLPLMKHDQIASQEYSIPVATSLPPNYLSFQDSSSGKHGGSDIKWVDGGKPLFKVSTFVVSTVNTQDPHVNEFFRQCQKREKDMSQSPTSNFVRSCKNLLNVEKIHTIMSFLPIILNQLFKVLVQNEEDEINTAVTRVLTDIMAKCHEEQLDHSVQSYIKFVFKTTACKERTIHEELAKNVTGLLKSNDFPTVKHVLKHSWFFFAIILKSMAQHLIDTNKIQLSRPQRFPESYQNELDNLVMVLSDHVTWKNKDALEETRRANHSVARFLKRCFTFMDRGFVFKMVNNYISMFSSGDPKILCQFKFDFLQEVCQHEHFIPLCLPIRSANIPDPLTPSESIQELHASDMPEYSITNEFCRKHFLIGILLREVGFALQEDQDVRHLALAVLKNLMAKHSFDDRYREPAKQAQIASLYMPLYGMLLDNMPRIYLKDLYPFTINTSNQGSRDDLSTNGGFQAQSAMKHANSVDTSFSKDVLNSIAAFSSIAISTVNHADSRASLASLDSNPSTNEKSSEKTDNCEKIPRPLSLIGSTLRFDKLDQAETRSLLMCFLHIMKTISEETLIAYWQRAPSPEVSDFFSILEVCLQNFRYLGKRNIIRKIAAAFKFVQSTQNNGTLKGSNPSCQTSGLLPQWMHTTSSHESQKQHRSQTLPIIRGKNALSNPKLLQMLDNTMTSNSNEIDIVHHVDTEANVATEVCLTILDLLALFTQVHQRQLQQSECQNSTMKRVFDTYMLFFQVNQSATALKHVFASLRLFVCKFPSAFFQGPADLCGSFCYEVLKCCNHRSRSTQTEASALLYFFMRKNFEFNKQKSIVRSHLQLIKAVSQLIADAGIGGSRFQHSLAITNNFANGDKQMKNSNFPAEVKDLTKRIRTVLMATAQMKEHEKDPEMLVDLQYSLANSYASTPELRRTWLESMAKIHARNGDLSEAAMCYIHIAALIAEYLKRRGYWKMEKLCTPSQLPEDIHPCDSNPLLTSPRGGSMFSMGWPAFLSITPNIKEEGAMKEDSGMQDTPYNENILVEQLYMCVEFLWKSERYELIADVNKPIIAVFEKQRDFKKLSDLYYDIHRSYLKVAEVVNSEKRLFGRYYRVAFYGQGFFEEEEGKEYIYKEPKLTGLSEISQRLLKLYADKFGADNVKIIQDSNKVNPKDLDPKYAYIQVTYVTPFFEEKELEDRKTDFEMHHNINRFVFETPFTLSGKKHGGVEEQCKRRTVLTTSHLFPYVKKRIQVISQSSTELNPIEVAIDEMSKKVSELNQLCTMEEVDMIRLQLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDNQVKLLKEIFRQFADACGQALDVNERLIKEDQLEYQEELRSHYKDMLSELSAIMNEQITYPDDPSKRGAERTCTRVSNKAAPTLPTVSISSSAEA", "length": 2152, "header": "tr|A0A287AV77-1|F1SNP7_PIG Computationally mapped isoform of Dedicator of cytokinesis 10 OS=Sus scrofa OX=9823 GN=DOCK10 PE=3 SV=3 CANONICAL=F1SNP7-1" }, "locus": { "chromosome": "15", "start_pos": 126612693, "end_pos": 126436228, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044820.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044820.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048012.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048012.3" } ] } }, { "isoform_ac": "F1SNP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SNP7/entry#F1SNP7-1", "sequence": { "sequence": "MGCTASIVLLQAFRSVVQRSCPHICRRRQEEPSHEILPLESDDEMSRPRTLIIMQEKPRLLEPLDYETVVEELEKTYQNDPLRDLLFFPRDDFSTTTVPWDIRTLYSTVPEDAEHKAENLLVKEACKFYSSQWYVVNYKYEQYSGDIRQLPRAEYKPEKLPSHSFEVDHEDADKDEDTTSHSSSKGGGGAGGTGVFKSGWLYKGNFNSTVNNTVTVRSFKKRFFQLTQLPDNSYIMNFYKDEKISKEPKGCIFLDSCTGVVQNNRLRKYAFELKMNDLTYFVLAAETESDMDEWIHTLNRILQISPEGPPQGRRSTELADLGLDSLDNSITCECTPEETDSSENSLHPDFTKYLTETEESVKTTRNIERLNLFSLDPDIDSLKLQKKDLLEPDFVIKPFEEKAAKRIMIICKALNLNLQGCVTENENDPITNIEPFFVSVALYDLRDSRKISADFHVDLNHTAVRQMISGASVALENGNIDAVTPRQSEEPHIKGFPEEWLKFPKQAIFSVSNPHSEIVLVAKIEKVLMGNIASGAEPYIKNPDSNKYAQKILKSNRQFCSKLGKYRMPFAWAVRSVFKDNQGNVDRDSRFSPLYRQESSKISTEDLLKLVSDYRRADRISKTQTIPGSLDIAVDNIPLEHPNCVTSSFIPVKPFNVVAPPEPTVEVEEFVYDSTKYCRPYRVYKNQIYVYPKHLKYDSQRCFSKARNITVCIEFKNSDEEDAKPVKCIYGKPGGPLFTSAAYTAVLHHSQNPDFSDEVKIELPTQLHEKHHILFSFYHITCDINAKANAKKKEALETPVGYAWLPLMKHDQIASQEYSIPVATSLPPNYLSFQDSSSGKHGGSDIKWVDGGKPLFKVSTFVVSTVNTQDPHVNEFFRQCQKREKDMSQSPTSNFVRSCKNLLNVEKIHTIMSFLPIILNQLFKVLVQNEEDEINTAVTRVLTDIMAKCHEEQLDHSVQSYIKFVFKTTACKERTIHEELAKNVTGLLKSNDFPTVKHVLKHSWFFFAIILKSMAQHLIDTNKIQLSRPQRFPESYQNELDNLVMVLSDHVTWKNKDALEETRRANHSVARFLKRCFTFMDRGFVFKMVNNYISMFSSGDPKILCQFKFDFLQEVCQHEHFIPLCLPIRSANIPDPLTPSESIQELHASDMPEYSITNEFCRKHFLIGILLREVGFALQEDQDVRHLALAVLKNLMAKHSFDDRYREPAKQAQIASLYMPLYGMLLDNMPRIYLKDLYPFTINTSNQGSRDDLSTNGGFQAQSAMKHANSVDTSFSKDVLNSIAAFSSIAISTVNHADSRASLASLDSNPSTNEKSSEKTDNCEKIPRPLSLIGSTLRFDKLDQAETRSLLMCFLHIMKTISEETLIAYWQRAPSPEVSDFFSILEVCLQNFRYLGKRNIIRKIAAAFKFVQSTQNNGTLKGSNPSCQTSGLLPQWMHTTSSHESQKQHRSQTLPIIRGKNALSNPKLLQMLDNTMTRQLQQSECQNSTMKRVFDTYMLFFQVNQSATALKHVFASLRLFVCKFPSAFFQGPADLCGSFCYEVLKCCNHRSRSTQTEASALLYFFMRKNFEFNKQKSIVRSHLQLIKAVSQLIADAGIGGSRFQHSLAITNNFANGDKQMKNSNFPAEVKDLTKRIRTVLMATAQMKEHEKDPEMLVDLQYSLANSYASTPELRRTWLESMAKIHARNGDLSEAAMCYIHIAALIAEYLKRRGYWKMEKLCTPSQLPEDIHPCDSNPLLTSPRGGSMFSMGWPAFLSITPNIKEEGAMKEDSGMQDTPYNENILVEQLYMCVEFLWKSERYELIADVNKPIIAVFEKQRDFKKLSDLYYDIHRSYLKVAEVVNSEKRLFGRYYRVAFYGQGFFEEEEGKEYIYKEPKLTGLSEISQRLLKLYADKFGADNVKIIQDSNKVNPKDLDPKYAYIQVTYVTPFFEEKELEDRKTDFEMHHNINRFVFETPFTLSGKKHGGVEEQCKRRTVLTTSHLFPYVKKRIQVISQSSTELNPIEVAIDEMSKKVSELNQLCTMEEVDMIRLQLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDNQVKLLKEIFRQFADACGQALDVNERLIKEDQLEYQEELRSHYKDMLSELSAIMNEQITYPDDPSKRGAERTCTRVSNKAAPTLPTVSISSSAEA", "length": 2161, "header": "tr|F1SNP7-1|F1SNP7_PIG Isoform 1 of Dedicator of cytokinesis 10 OS=Sus scrofa OX=9823 GN=DOCK10 PE=3 SV=5 CANONICAL=F1SNP7-1" }, "locus": { "chromosome": "15", "start_pos": 126650513, "end_pos": 126436228, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017680.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017680.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017201.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017201.5" } ] } }, { "isoform_ac": "I3LU05-1", "url": "https://www.uniprot.org/uniprotkb/F1SNP7/entry#I3LU05-1", "sequence": { "sequence": "MASERTRRFTRSLLRPGQAAELRHSAASAAAVAVSSRQQQRQEKPRLLEPLDYETVVEELEKTYQNDPLRDLLFFPRDDFSTTTVPWDIRTLYSTVPEDAEHKAENLLVKEACKFYSSQWYVVNYKYEQYSGDIRQLPRAEYKPEKLPSHSFEVDHEDADKDEDTTSHSSSKGGGGAGGTGVFKSGWLYKGNFNSTVNNTVTVRSFKKRFFQLTQLPDNSYIMNFYKDEKISKEPKGCIFLDSCTGVVQNNRLRKYAFELKMNDLTYFVLAAETESDMDEWIHTLNRILQISPEGPPQGRRSTELADLGLDSLDNSITCECTPEETDSSENSLHPDFTKYLTETEESVKTTRNIERLNLFSLDPDIDSLKLQKKDLLEPDFVIKPFEEKAAKRIMIICKALNLNLQGCVTENENDPITNIEPFFVSVALYDLRDSRKISADFHVDLNHTAVRQMISGASVALENGNIDAVTPRQSEEPHIKGFPEEWLKFPKQAIFSVSNPHSEIVLVAKIEKVLMGNIASGAEPYIKNPDSNKYAQKILKSNRQFCSKLGKYRMPFAWAVRSVFKDNQGNVDRDSRFSPLYRQESSKISTEDLLKLVSDYRRADRISKTQTIPGSLDIAVDNIPLEHPNCVTSSFIPVKPFNVVAPPEPTVEVEEFVYDSTKYCRPYRVYKNQIYVYPKHLKYDSQRCFSKARNITVCIEFKNSDEEDAKPVKCIYGKPGGPLFTSAAYTAVLHHSQNPDFSDEVKIELPTQLHEKHHILFSFYHITCDINAKANAKKKEALETPVGYAWLPLMKHDQIASQEYSIPVATSLPPNYLSFQDSSSGKHGGSDIKWVDGGKPLFKVSTFVVSTVNTQDPHVNEFFRQCQKREKDMSQSPTSNFVRSCKNLLNVEKIHTIMSFLPIILNQLFKVLVQNEEDEINTAVTRVLTDIMAKCHEEQLDHSVQSYIKFVFKTTACKERTIHEELAKNVTGLLKSNDFPTVKHVLKHSWFFFAIILKSMAQHLIDTNKIQLSRPQRFPESYQNELDNLVMVLSDHVTWKNKDALEETRRANHSVARFLKRCFTFMDRGFVFKMVNNYISMFSSGDPKILCQFKFDFLQEVCQHEHFIPLCLPIRSANIPDPLTPSESIQELHASDMPEYSITNEFCRKHFLIGILLREVGFALQEDQDVRHLALAVLKNLMAKHSFDDRYREPAKQAQIASLYMPLYGMLLDNMPRIYLKDLYPFTINTSNQGSRDDLSTNGGFQAQSAMKHANSVDTSFSKDVLNSIAAFSSIAISTVNHADSRASLASLDSNPSTNEKSSEKTDNCEKIPRPLSLIGSTLRFDKLDQAETRSLLMCFLHIMKTISEETLIAYWQRAPSPEVSDFFSILEVCLQNFRYLGKRNIIRKIAAAFKFVQSTQNNGTLKGSNPSCQTSGLLPQWMHTTSSHESQKQHRSQTLPIIRGKNALSNPKLLQMLDNTMTRQLQQSECQNSTMKRVFDTYMLFFQVNQSATALKHVFASLRLFVCKFPSAFFQGPADLCGSFCYEVLKCCNHRSRSTQTEASALLYFFMRKNFEFNKQKSIVRSHLQLIKAVSQLIADAGIGGSRFQHSLAITNNFANGDKQMKNSNFPAEVKDLTKRIRTVLMATAQMKEHEKDPEMLVDLQYSLANSYASTPELRRTWLESMAKIHARNGDLSEAAMCYIHIAALIAEYLKRRGYWKMEKLCTPSQLPEDIHPCDSNPLLTSPRGGSMFSMGWPAFLSITPNIKEEGAMKEDSGMQDTPYNENILVEQLYMCVEFLWKSERYELIADVNKPIIAVFEKQRDFKKLSDLYYDIHRSYLKVAEVVNSEKRLFGRYYRVAFYGQGFFEEEEGKEYIYKEPKLTGLSEISQRLLKLYADKFGADNVKIIQDSNKVNPKDLDPKYAYIQVTYVTPFFEEKELEDRKTDFEMHHNINRFVFETPFTLSGKKHGGVEEQCKRRTVLTTSHLFPYVKKRIQVISQSSTELNPIEVAIDEMSKKVSELNQLCTMEEVDMIRLQLKLQGSVSVKVNAGPMAYARAFLEETNAKKYPDNQVKLLKEIFRQFADACGQALDVNERLIKEDQLEYQEELRSHYKDMLSELSAIMNEQITYPDDPSKRGAERTCTRVSNKAAPTLPTVSISSSAEA", "length": 2148, "header": "tr|I3LU05-1|F1SNP7_PIG Computationally mapped isoform of Dedicator of cytokinesis 10 OS=Sus scrofa OX=9823 GN=DOCK10 PE=3 SV=4 CANONICAL=F1SNP7-1" }, "locus": { "chromosome": "15", "start_pos": 126711465, "end_pos": 126436228, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026520.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026520.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027604.4", "url": "https://www.ensembl.org/id/ENSSSCP00000027604.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 664, "start_aa": "Thr", "end_pos": 664, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr664", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LU05", "url": "https://www.uniprot.org/uniprotkb/I3LU05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013148", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013148", "resource": "Reactome", "description": "CDC42 GTPase cycle" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" }, { "id": "R-SSC-983231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "resource": "Reactome", "description": "Factors involved in megakaryocyte development and platelet production" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "regulation of Rho protein signal transduction", "id": "GO:0035023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035023", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "regulation of cell migration", "id": "GO:0030334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030334", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "dendritic spine morphogenesis", "id": "GO:0060997", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060997", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "B cell homeostasis", "id": "GO:0001782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001782", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "marginal zone B cell differentiation", "id": "GO:0002315", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002315", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "regulation of postsynapse assembly", "id": "GO:0150052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150052", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" }, { "name": "dendritic spine", "id": "GO:0043197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043197", "evidence": [ { "database": "UniProtKB", "id": "F1SNP7", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1066, "end_pos": 1068, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1243, "end_pos": 1245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1417, "end_pos": 1419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1487, "end_pos": 1489, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1504, "end_pos": 1506, "annotation": "n_glycosylation_sequon" }, { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" }, { "start_pos": 708, "end_pos": 710, "annotation": "n_glycosylation_sequon" }, { "start_pos": 983, "end_pos": 985, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" }, { "id": "PS51650", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51650" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 DOCK-type", "eco_id": "ECO_0000259", "start_pos": 685, "end_pos": 863, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" }, { "id": "PS51651", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51651" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DOCKER", "eco_id": "ECO_0000259", "start_pos": 1665, "end_pos": 2125, "start_aa": "Asn", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNP7" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 194, "end_pos": 303, "start_aa": "Gly", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 664 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1066, "end_pos": 1068 }, { "start_pos": 1243, "end_pos": 1245 }, { "start_pos": 1417, "end_pos": 1419 }, { "start_pos": 1487, "end_pos": 1489 }, { "start_pos": 1504, "end_pos": 1506 }, { "start_pos": 207, "end_pos": 209 }, { "start_pos": 211, "end_pos": 213 }, { "start_pos": 460, "end_pos": 462 }, { "start_pos": 708, "end_pos": 710 }, { "start_pos": 983, "end_pos": 985 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI56-1", "uniprot_ac": "F1SI56", "uniprot_id": "F1SI56_PIG", "mass": { "chemical_mass": 81422.0, "monoisotopic_mass": 81422.0 }, "refseq": {}, "gene_names": [ { "name": "TGM5", "type": "recommended", "evidence": [ { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56" } ] } ], "protein_names": [ { "name": "Protein-glutamine gamma-glutamyltransferase 5", "type": "recommended", "evidence": [ { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.13", "type": "synonym", "evidence": [ { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56/entry#names_and_taxonomy" } ] }, { "name": "Transglutaminase-5", "type": "synonym", "evidence": [ { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalyzes the cross-linking of proteins and the conjugation of polyamines to proteins. Contributes to the formation of the cornified cell envelope of keratinocytes.", "evidence": [ { "database": "UniProtKB", "id": "F1SI56", "url": "https://www.uniprot.org/uniprotkb/F1SI56#function" }, { "database": "UniProtKB", "id": "ARBA00054964", "url": "https://www.uniprot.org/uniprotkb/ARBA00054964#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI56", "url": "https://www.uniprot.org/uniprotkb/F1SI56" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TGM5", "url": "https://www.uniprot.org/uniprotkb/F1SI56", "locus": { "chromosome": "1", "start_pos": 128217656, "end_pos": 128191630, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004713", "url": "https://www.ensembl.org/id/ENSSSCG00000004713" } ] } } ], "crossref": [ { "id": "F1SI56", "url": "https://alphafold.ebi.ac.uk/entry/F1SI56", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004713", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004713", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002931", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002931", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036238", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036238", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036985", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036985", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050779", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050779", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11590", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11590", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11590:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11590:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00868", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00868", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01841", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01841", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AX62", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI56", "url": "https://www.uniprot.org/uniprotkb/F1SI56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI56-1", "url": "https://www.uniprot.org/uniprotkb/F1SI56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQGLEVALIDLQSSWNNVRHHTEEISSDRLLVRRGQAFIITLYFRNRAFQPGLDNIIFVADTGEDHGWLAGLVCVGPLPDVAKGTRAVFSLAGHGGPSPWMASLEATGAASMEVSLCAPPMAAVGRYLLKVHIESLQGPVTAYQLGEFILLFNPWCPEDAVYLDSEPQRQEYVVNDYGFIYQGNKNWIRPCPWNYGQFEENIIDICLELLAKSLNFQIDPATDCALRGSPVYISRVVCAMINSNDDNGVLNGNWSENYLDGINPAEWTGSVAILKQWHATGCQPVRYGQCWVFAAVMCTVMRCLGIPTRVITNFDSGHDTDGNLIIDEYYDNTGRILENKKKDTVWNFHVWNECWMARRDLPEGYGGWQVLDATPQETSNGLYCCGPASVRAIKEGEVDLNYDTAFAFSMVNADCMSWLVFRGKEQKLHQDTSSVGNFISTKGIQSNERDDITENYKYGEGSPQERQVFLKALQKLKAGGSQGSLREDLQPSGSLPLRDSPRSLATPSLRPSDVVQVSLKFQLLDPPDMGRDIRFVLLALNMSLQFKDLRVNLSAQSLLHDGSPLPPFWQDTAFLTLAPEEAKTHSCKIPYSQYSQYLSTDKLIRISALGEEKNSPEKILVNKIITLAYPSIMINVLGAAIVNQPLSIQVIFSNPLSEPVADCVLTVEGSGLFRKQQRVLIGVLKPQHRASLTLETVPFKSGQRQIQANLRSDKFKDIKGYKNIYVDLGL", "length": 731, "header": "tr|F1SI56-1|F1SI56_PIG Isoform 1 of Protein-glutamine gamma-glutamyltransferase 5 OS=Sus scrofa OX=9823 GN=TGM5 PE=3 SV=3 CANONICAL=F1SI56-1" }, "isoforms": [ { "isoform_ac": "A0A287AX62-1", "url": "https://www.uniprot.org/uniprotkb/F1SI56/entry#A0A287AX62-1", "sequence": { "sequence": "MAQGLEVALIDLQSSWNNVRHHTEEISSDRLLVRRGQAFIITLYFRNRAFQPGLDNIIFVADTEDAVYLDSEPQRQEYVVNDYGFIYQGNKNWIRPCPWNYGQFEENIIDICLELLAKSLNFQIDPATDCALRGSPVYISRVVCAMINSNDDNGVLNGNWSENYLDGINPAEWTGSVAILKQWHATGCQPVRYGQCWVFAAVMCTVMRCLGIPTRVITNFDSGHDTDGNLIIDEYYDNTGRILENKKKDTVWNFHVWNECWMARRDLPEGYGGWQVLDATPQETSNGLYCCGPASVRAIKEGEVDLNYDTAFAFSMVNADCMSWLVFRGKEQKLHQDTSSVGNFISTKGIQSNERDDITENYKYGEGSPQERQVFLKALQKLKAGGSQGSLREDLQPSGSLPLRDSPRSLATPSLRPSDVVQVSLKFQLLDPPDMGRDIRFVLLALNMSLQFKDLRVNLSAQSLLHDGSPLPPFWQDTAFLTLAPEEAKTHSCKIPYSQYSQYLSTDKLIRISALGEEKNSPEKILVNKIITLAYPSIMINVLGAAIVNQPLSIQVIFSNPLSEPVADCVLTVEGSGLFRKQQRVLIGVLKPQHRASLTLETVPFKSGQRQIQANLRSDKFKDIKGYKNIYVDLGL", "length": 636, "header": "tr|A0A287AX62-1|F1SI56_PIG Computationally mapped isoform of Protein-glutamine gamma-glutamyltransferase 5 OS=Sus scrofa OX=9823 GN=TGM5 PE=3 SV=2 CANONICAL=F1SI56-1" }, "locus": { "chromosome": "1", "start_pos": 128216863, "end_pos": 128191801, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056889.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056889.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048742.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048742.2" } ] } }, { "isoform_ac": "F1SI56-1", "url": "https://www.uniprot.org/uniprotkb/F1SI56/entry#F1SI56-1", "sequence": { "sequence": "MAQGLEVALIDLQSSWNNVRHHTEEISSDRLLVRRGQAFIITLYFRNRAFQPGLDNIIFVADTGEDHGWLAGLVCVGPLPDVAKGTRAVFSLAGHGGPSPWMASLEATGAASMEVSLCAPPMAAVGRYLLKVHIESLQGPVTAYQLGEFILLFNPWCPEDAVYLDSEPQRQEYVVNDYGFIYQGNKNWIRPCPWNYGQFEENIIDICLELLAKSLNFQIDPATDCALRGSPVYISRVVCAMINSNDDNGVLNGNWSENYLDGINPAEWTGSVAILKQWHATGCQPVRYGQCWVFAAVMCTVMRCLGIPTRVITNFDSGHDTDGNLIIDEYYDNTGRILENKKKDTVWNFHVWNECWMARRDLPEGYGGWQVLDATPQETSNGLYCCGPASVRAIKEGEVDLNYDTAFAFSMVNADCMSWLVFRGKEQKLHQDTSSVGNFISTKGIQSNERDDITENYKYGEGSPQERQVFLKALQKLKAGGSQGSLREDLQPSGSLPLRDSPRSLATPSLRPSDVVQVSLKFQLLDPPDMGRDIRFVLLALNMSLQFKDLRVNLSAQSLLHDGSPLPPFWQDTAFLTLAPEEAKTHSCKIPYSQYSQYLSTDKLIRISALGEEKNSPEKILVNKIITLAYPSIMINVLGAAIVNQPLSIQVIFSNPLSEPVADCVLTVEGSGLFRKQQRVLIGVLKPQHRASLTLETVPFKSGQRQIQANLRSDKFKDIKGYKNIYVDLGL", "length": 731, "header": "tr|F1SI56-1|F1SI56_PIG Isoform 1 of Protein-glutamine gamma-glutamyltransferase 5 OS=Sus scrofa OX=9823 GN=TGM5 PE=3 SV=3 CANONICAL=F1SI56-1" }, "locus": { "chromosome": "1", "start_pos": 128216863, "end_pos": 128191801, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005205.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005205.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005079.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005079.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 507, "start_aa": "Thr", "end_pos": 507, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr507", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AX62", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SI56", "url": "https://www.uniprot.org/uniprotkb/F1SI56" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SI56", "url": "https://www.uniprot.org/uniprotkb/F1SI56" } ], "pmid": "" }, { "name": "protein-glutamine gamma-glutamyltransferase activity", "id": "GO:0003810", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003810", "evidence": [ { "database": "UniProtKB", "id": "F1SI56", "url": "https://www.uniprot.org/uniprotkb/F1SI56" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "peptide cross-linking", "id": "GO:0018149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018149", "evidence": [ { "database": "UniProtKB", "id": "F1SI56", "url": "https://www.uniprot.org/uniprotkb/F1SI56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" }, { "start_pos": 553, "end_pos": 555, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SI56-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 731, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SI56-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SI56" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56" }, { "id": "SM00460", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00460" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transglutaminase-like", "eco_id": "ECO_0000259", "start_pos": 283, "end_pos": 376, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "A0A287AX62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62#function" }, { "id": "A0A287AX62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62" }, { "id": "PIRSR000459-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000459-2" } ], "binding_site_uniprot": 318, "amino_acid": "Gly", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 318, "end_pos": 318, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AX62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62#function" }, { "id": "A0A287AX62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62" }, { "id": "PIRSR000459-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000459-2" } ], "binding_site_uniprot": 320, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 320, "end_pos": 320, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AX62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62#function" }, { "id": "A0A287AX62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62" }, { "id": "PIRSR000459-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000459-2" } ], "binding_site_uniprot": 366, "amino_acid": "Tyr", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 366, "end_pos": 366, "start_aa": "Tyr", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A287AX62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62#function" }, { "id": "A0A287AX62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A287AX62" }, { "id": "PIRSR000459-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000459-2" } ], "binding_site_uniprot": 371, "amino_acid": "Val", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 371, "end_pos": 371, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56#function" }, { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56" }, { "id": "PIRSR000459-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000459-2" } ], "binding_site_uniprot": 413, "amino_acid": "Asn", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 413, "end_pos": 413, "start_aa": "Asn", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56#function" }, { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56" }, { "id": "PIRSR000459-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000459-2" } ], "binding_site_uniprot": 415, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 415, "end_pos": 415, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56#function" }, { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56" }, { "id": "PIRSR000459-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000459-2" } ], "binding_site_uniprot": 461, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 461, "end_pos": 461, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56#function" }, { "id": "F1SI56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI56" }, { "id": "PIRSR000459-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000459-2" } ], "binding_site_uniprot": 466, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 466, "end_pos": 466, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 507 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 254, "end_pos": 256 }, { "start_pos": 542, "end_pos": 544 }, { "start_pos": 553, "end_pos": 555 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK96-1", "uniprot_ac": "F1SK96", "uniprot_id": "F1SK96_PIG", "mass": { "chemical_mass": 85310.0, "monoisotopic_mass": 85310.0 }, "refseq": { "ac": "XP_020926321", "name": "discoidin, CUB and LCCL domain-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926321" }, "gene_names": [ { "name": "DCBLD2", "type": "recommended", "evidence": [ { "id": "F1SK96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK96" } ] }, { "name": "DCBLD2", "type": "synonym", "evidence": [ { "id": "XP_020926321", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926321" } ] } ], "protein_names": [ { "name": "Discoidin, CUB and LCCL domain-containing protein 2", "type": "recommended", "evidence": [ { "id": "F1SK96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK96/entry#names_and_taxonomy" } ] }, { "name": "Endothelial and smooth muscle cell-derived neuropilin-like protein", "type": "synonym", "evidence": [ { "id": "F1SK96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK96/entry#names_and_taxonomy" } ] }, { "name": "discoidin, CUB and LCCL domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020926321", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926321" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK96", "url": "https://www.uniprot.org/uniprotkb/F1SK96" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DCBLD2", "url": "https://www.uniprot.org/uniprotkb/F1SK96", "locus": { "chromosome": "13", "start_pos": 160160284, "end_pos": 160063742, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011977", "url": "https://www.ensembl.org/id/ENSSSCG00000011977" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011977", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011977", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00041", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00041", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00057", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00057", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106504106", "url": "https://www.ncbi.nlm.nih.gov/gene/106504106", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050633", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050633", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504106", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504106", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SK96", "url": "https://www.orthodb.org/?gene=F1SK96", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46806", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46806", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46806:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46806:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00754", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00754", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03815", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03815", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020926321", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926321", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AXX3", "url": "https://www.uniprot.org/uniprotkb/A0A287AXX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AXX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAA1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAA1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK96", "url": "https://www.uniprot.org/uniprotkb/F1SK96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK96-1", "url": "https://www.uniprot.org/uniprotkb/F1SK96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRAMVRAGHNPLLFLVRAAAAAPARAALPLSRSYPLPPRSNSSSFPMPLFLLLLLILLLLLEDAGAQQGDGCGHTVLGPESGTLTSINYPHTYPNSTVCEWEIRVKMGERVRIKFGDFDIEDSHSCHFNYLRIYNGIGVSRTEIGKYCGLGLQMNDSIESKSNEITVLFMSGIHVSGRGFLASYSVIDKQDLITCLDTASSFLEPEFSKYCPAGCLLPFAEISGTIPHGYRDSSPLCMAGVHAGVVSNILGGQISVVISKGIPYYESSLANNVTSVVGHLSTSLFTFKTSGCYGTLGMESGVIADAQITASSVLEWTDHTGQENSWKPEKARLKKPGPPWAAFATDEYQWLQIDLNKEKKITGIVTTGSTMVEHNYYVSAYRILYSDDGQRWTVYREPGVEQDKIFQGNKDYHQDVRNNFLPPIIARFIRVNPTQWQQKIAMKMELLGCQFIPKGRSPKLTQPPPPRSNKDLKNTTALPKIAKGHAPKFTQPLQPRSSNEFPVHTEQTTATPEIKNTTVTPNVTKDVALAAVLVPVLVMVLTTLILILVCAWHWRNRKKKTEGTYDLPYWDRAGWWKGMKQFLPARSVEHEETPVRYSSSEVNHLSPREVTTVLQTDSAEYAQPLVGGIVGTLHQRSTFKPEEGKEAGYADLDPYSSPVQEVYHAYAEPLPITGPEYATPIVMDMSGHPTGSVGLPSTSTFKATGNQPPALVGTYNTLLSRTDSCSSARAQYDTPKGGKPGPSAPDELVYQVPQSTQEVAGAGRDGECDVFKEIL", "length": 777, "header": "tr|F1SK96-1|F1SK96_PIG Isoform 1 of Discoidin, CUB and LCCL domain-containing protein 2 OS=Sus scrofa OX=9823 GN=DCBLD2 PE=4 SV=3 CANONICAL=F1SK96-1" }, "isoforms": [ { "isoform_ac": "A0A287AXX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SK96/entry#A0A287AXX3-1", "sequence": { "sequence": "MASRAMVRAGHNPLLFLVRAAAAAPARAALPLSRSYPLPPRSNSSSFPMPLFLLLLLILLLLLEDAGAQQGKYCGLGLQMNDSIESKSNEITVLFMSGIHVSGRGFLASYSVIDKQDLITCLDTASSFLEPEFSKYCPAGCLLPFAEISGTIPHGYRDSSPLCMAGVHAGVVSNILGGQISVVISKGIPYYESSLANNVTSVVGHLSTSLFTFKTSGCYGTLGMESGVIADAQITASSVLEWTDHTGQENSWKPEKARLKKPGPPWAAFATDEYQWLQIDLNKEKKITGIVTTGSTMVEHNYYVSAYRILYSDDGQRWTVYREPGVEQDKIFQGNKDYHQDVRNNFLPPIIARFIRVNPTQWQQKIAMKMELLGCQFIPKGRSPKLTQPPPPRSNKDLKNTTALPKIAKGHAPKFTQPLQPRSSNEFPVHTEQTTATPEIKNTTVTPNVTKDVALAAVLVPVLVMVLTTLILILVCAWHWRNRKKKTEGTYDLPYWDRAGWWKGMKQFLPARSVEHEETPVRYSSSEVNHLSPREVTTVLQTDSAEYAQPLVGGIVGTLHQRSTFKPEEGKEAGYADLDPYSSPVQEVYHAYAEPLPITGPEYATPIVMDMSGHPTGSVGLPSTSTFKATGNQPPALVGTYNTLLSRTDSCSSARAQYDTPKGGKPGPSAPDELVYQVPQSTQEVAGAGRDGECDVFKEIL", "length": 701, "header": "tr|A0A287AXX3-1|F1SK96_PIG Computationally mapped isoform of Discoidin, CUB and LCCL domain-containing protein 2 OS=Sus scrofa OX=9823 GN=DCBLD2 PE=4 SV=3 CANONICAL=F1SK96-1" }, "locus": { "chromosome": "13", "start_pos": 160156202, "end_pos": 160064437, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062739.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062739.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048993.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048993.3" } ] } }, { "isoform_ac": "A0A8W4FAA1-1", "url": "https://www.uniprot.org/uniprotkb/F1SK96/entry#A0A8W4FAA1-1", "sequence": { "sequence": "MASRAMVRAGHNPLLFLVRAAAAAPARAALPLSRSYPLPPRSNSSSFPMPLFLLLLLILLLLLEDAGAQQGDGCGHTVLGPESGTLTSINYPHTYPNSTVCEWEIRVKMGERVRIKFGDFDIEDSHSCHFNYLRIYNGIGVSRTEIGKYCGLGLQMNDSIESKSNEITVLFMSGIHVSGRGFLASYSVIDKQDLITCLDTASSFLEPEFSKYCPAGCLLPFAEISGTIPHGYRDSSPLCMAGVHAGVVSNILGGQISVVISKGIPYYESSLANNVTSVVGHLSTSLFTFKTSGCYGTLGMESGVIADAQITASSVLEWTDHTGQENSWKPEKARLKKPGPPWAAFATDEYQWLQIDLNKEKKITGIVTTGSTMVEHNYYVSAYRILYSDDGQRWTVYREPGVEQDKIFQGNKDYHQDVRNNFLPPIIARFIRVNPTQWQQKIAMKMELLGCQFIPKGRSPKLTQPPPPRSNKDLKNTTALPKIAKGHAPKFTQPLQPRSSNEFPVHTEQTTATPEIKNTTVTPNVTKDVALAAVLVPVLVMVLTTLILILVCAWHWRNRKKKTEGTYDLPYWDRAGWWKGMKQFLPARSVEHEETPVRYSSSEVNHLSPREVTTVLQTDSAEYAQPLVGGIVGTLHQRSTFKPEEGKEAGYADLDPYSSPVQEVYHAYAEPLPITGPEYATPIVMDMSGHPTGSVGLPSTSTFKATGNQPPALVGTYNTLLSRTDSCSSARAQYDTPKGTL", "length": 741, "header": "tr|A0A8W4FAA1-1|F1SK96_PIG Computationally mapped isoform of Discoidin, CUB and LCCL domain-containing protein 2 OS=Sus scrofa OX=9823 GN=DCBLD2 PE=4 SV=1 CANONICAL=F1SK96-1" }, "locus": { "chromosome": "13", "start_pos": 160156524, "end_pos": 160064437, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106337.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106337.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076254.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076254.1" } ] } }, { "isoform_ac": "F1SK96-1", "url": "https://www.uniprot.org/uniprotkb/F1SK96/entry#F1SK96-1", "sequence": { "sequence": "MASRAMVRAGHNPLLFLVRAAAAAPARAALPLSRSYPLPPRSNSSSFPMPLFLLLLLILLLLLEDAGAQQGDGCGHTVLGPESGTLTSINYPHTYPNSTVCEWEIRVKMGERVRIKFGDFDIEDSHSCHFNYLRIYNGIGVSRTEIGKYCGLGLQMNDSIESKSNEITVLFMSGIHVSGRGFLASYSVIDKQDLITCLDTASSFLEPEFSKYCPAGCLLPFAEISGTIPHGYRDSSPLCMAGVHAGVVSNILGGQISVVISKGIPYYESSLANNVTSVVGHLSTSLFTFKTSGCYGTLGMESGVIADAQITASSVLEWTDHTGQENSWKPEKARLKKPGPPWAAFATDEYQWLQIDLNKEKKITGIVTTGSTMVEHNYYVSAYRILYSDDGQRWTVYREPGVEQDKIFQGNKDYHQDVRNNFLPPIIARFIRVNPTQWQQKIAMKMELLGCQFIPKGRSPKLTQPPPPRSNKDLKNTTALPKIAKGHAPKFTQPLQPRSSNEFPVHTEQTTATPEIKNTTVTPNVTKDVALAAVLVPVLVMVLTTLILILVCAWHWRNRKKKTEGTYDLPYWDRAGWWKGMKQFLPARSVEHEETPVRYSSSEVNHLSPREVTTVLQTDSAEYAQPLVGGIVGTLHQRSTFKPEEGKEAGYADLDPYSSPVQEVYHAYAEPLPITGPEYATPIVMDMSGHPTGSVGLPSTSTFKATGNQPPALVGTYNTLLSRTDSCSSARAQYDTPKGGKPGPSAPDELVYQVPQSTQEVAGAGRDGECDVFKEIL", "length": 777, "header": "tr|F1SK96-1|F1SK96_PIG Isoform 1 of Discoidin, CUB and LCCL domain-containing protein 2 OS=Sus scrofa OX=9823 GN=DCBLD2 PE=4 SV=3 CANONICAL=F1SK96-1" }, "locus": { "chromosome": "13", "start_pos": 160156202, "end_pos": 160064437, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013106.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013106.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012761.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012761.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FAA1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAA1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504106", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504106", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SK96", "url": "https://www.uniprot.org/uniprotkb/F1SK96" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SK96", "url": "https://www.uniprot.org/uniprotkb/F1SK96" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SK96", "url": "https://www.uniprot.org/uniprotkb/F1SK96" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of cell growth", "id": "GO:0030308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030308", "evidence": [ { "database": "UniProtKB", "id": "F1SK96", "url": "https://www.uniprot.org/uniprotkb/F1SK96" } ], "pmid": "" }, { "name": "wound healing", "id": "GO:0042060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042060", "evidence": [ { "database": "UniProtKB", "id": "F1SK96", "url": "https://www.uniprot.org/uniprotkb/F1SK96" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1SK96", "url": "https://www.uniprot.org/uniprotkb/F1SK96" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 476, "end_pos": 478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" }, { "start_pos": 524, "end_pos": 526, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK96" }, { "id": "PS01180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CUB", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 189, "start_aa": "Cys", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SK96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK96" }, { "id": "PS50022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50022" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F5/8 type C", "eco_id": "ECO_0000259", "start_pos": 294, "end_pos": 451, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SK96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK96" }, { "id": "PS50820", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50820" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LCCL", "eco_id": "ECO_0000259", "start_pos": 213, "end_pos": 287, "start_aa": "Cys", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 }, { "start_pos": 274, "end_pos": 276 }, { "start_pos": 43, "end_pos": 45 }, { "start_pos": 476, "end_pos": 478 }, { "start_pos": 518, "end_pos": 520 }, { "start_pos": 524, "end_pos": 526 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJU3-1", "uniprot_ac": "F1SJU3", "uniprot_id": "F1SJU3_PIG", "mass": { "chemical_mass": 37095.0, "monoisotopic_mass": 37095.0 }, "refseq": { "ac": "NP_001231550", "name": "gamma-parvin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231550" }, "gene_names": [ { "name": "PARVG", "type": "recommended", "evidence": [ { "id": "F1SJU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ] }, { "name": "PARVG", "type": "synonym", "evidence": [ { "id": "NP_001231550", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231550" } ] } ], "protein_names": [ { "name": "Gamma-parvin", "type": "recommended", "evidence": [ { "id": "F1SJU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU3/entry#names_and_taxonomy" } ] }, { "name": "gamma-parvin", "type": "synonym", "evidence": [ { "id": "NP_001231550", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231550" } ] } ], "function": [ { "annotation": "Plays a role with ILK in promoting the cell adhesion and spreading of leukocytes.", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3#function" }, { "database": "UniProtKB", "id": "ARBA00057182", "url": "https://www.uniprot.org/uniprotkb/ARBA00057182#function" }, { "database": "UniProtKB", "id": "A0A287BC36", "url": "https://www.uniprot.org/uniprotkb/A0A287BC36#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PARVG", "url": "https://www.uniprot.org/uniprotkb/F1SJU3", "locus": { "chromosome": "5", "start_pos": 4873153, "end_pos": 4898647, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000025", "url": "https://www.ensembl.org/id/ENSSSCG00000000025" } ] } } ], "crossref": [ { "id": "F1SJU3", "url": "https://alphafold.ebi.ac.uk/entry/F1SJU3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000025", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000025", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21305", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21305", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21307", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21307", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520379", "url": "https://www.ncbi.nlm.nih.gov/gene/100520379", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520379", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520379", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJU3", "url": "https://www.orthodb.org/?gene=F1SJU3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12114", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12114", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12114:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12114:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231550", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231550", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BC36", "url": "https://www.uniprot.org/uniprotkb/A0A287BC36", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BC36-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BC36-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJU3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPESLYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKWSVESIFNKDLLATLHLLVALAKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLKYPVSPEDIVNKDAKSTLRVLYSLFCKHKLKESADGVPRGSPN", "length": 331, "header": "tr|F1SJU3-1|F1SJU3_PIG Isoform 1 of Gamma-parvin OS=Sus scrofa OX=9823 GN=PARVG PE=3 SV=4 CANONICAL=F1SJU3-1" }, "isoforms": [ { "isoform_ac": "A0A287BC36-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU3/entry#A0A287BC36-1", "sequence": { "sequence": "MGWGSAPSPPSATLGGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKWSVESIFNKDLLATLHLLVALAKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLKYPVSPEDIVNKDAKSTLRVLYSLFCKHKLKESADGVPRGSPN", "length": 320, "header": "tr|A0A287BC36-1|F1SJU3_PIG Computationally mapped isoform of Gamma-parvin OS=Sus scrofa OX=9823 GN=PARVG PE=3 SV=2 CANONICAL=F1SJU3-1" }, "locus": { "chromosome": "5", "start_pos": 4896052, "end_pos": 4874562, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065458.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065458.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054080.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054080.2" } ] } }, { "isoform_ac": "F1SJU3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU3/entry#F1SJU3-1", "sequence": { "sequence": "MEPESLYNLLQAPGKVDPPAAETLAQGEKRKYLPPTSRKDPRFEELQKALMEWINTELLPEHIVVRSLEEDMFDGLILHHLFQKLAGLKLNVEEIALTSASQRRKLTVVLEAANKSLQVEESQAKWSVESIFNKDLLATLHLLVALAKRFQPSLPLPANVQVEVITMESTKSGLKSEKSVEQLTECSTDTDQASKDVFDELFKLAPEKVNAVKEAIMNFVNQNLDRLGLSVQNLDTQFADGVILLLLIGQLEGFFLHLKEFYLTPNSPAEMLHNVTLALELLKDEGLLKYPVSPEDIVNKDAKSTLRVLYSLFCKHKLKESADGVPRGSPN", "length": 331, "header": "tr|F1SJU3-1|F1SJU3_PIG Isoform 1 of Gamma-parvin OS=Sus scrofa OX=9823 GN=PARVG PE=3 SV=4 CANONICAL=F1SJU3-1" }, "locus": { "chromosome": "5", "start_pos": 4896673, "end_pos": 4874562, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000026.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000026.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000026.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000026.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BC36", "url": "https://www.uniprot.org/uniprotkb/A0A287BC36" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520379", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520379", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" }, { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" }, { "name": "substrate adhesion-dependent cell spreading", "id": "GO:0034446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034446", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" }, { "name": "establishment or maintenance of cell polarity regulating cell shape", "id": "GO:0071963", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071963", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" }, { "name": "cell projection assembly", "id": "GO:0030031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030031", "evidence": [ { "database": "UniProtKB", "id": "F1SJU3", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJU3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 331, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJU3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJU3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJU3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU3" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 151, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 274, "end_pos": 276 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLY1-1", "uniprot_ac": "F1SLY1", "uniprot_id": "F1SLY1_PIG", "mass": { "chemical_mass": 93486.0, "monoisotopic_mass": 93486.0 }, "refseq": { "ac": "XP_003134795", "name": "IQ and ubiquitin-like domain-containing protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134795" }, "gene_names": [ { "name": "IQUB", "type": "recommended", "evidence": [ { "id": "F1SLY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" } ] }, { "name": "IQUB", "type": "synonym", "evidence": [ { "id": "XP_003134795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134795" } ] } ], "protein_names": [ { "name": "IQ and ubiquitin-like domain-containing protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003134795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134795" } ] }, { "name": "IQ motif and ubiquitin domain containing", "type": "synonym", "evidence": [ { "id": "F1SLY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLY1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLY1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IQUB", "url": "https://www.uniprot.org/uniprotkb/F1SLY1", "locus": { "chromosome": "18", "start_pos": 24014817, "end_pos": 23902980, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016608", "url": "https://www.ensembl.org/id/ENSSSCG00000016608" } ] } } ], "crossref": [ { "id": "F1SLY1", "url": "https://alphafold.ebi.ac.uk/entry/F1SLY1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016608", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016608", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513386", "url": "https://www.ncbi.nlm.nih.gov/gene/100513386", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037695", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037695", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513386", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513386", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TFAQKER", "url": "https://omabrowser.org/oma/group/TFAQKER/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R5T7", "url": "https://www.orthodb.org/?gene=A0A5G2R5T7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SLY1", "url": "https://www.orthodb.org/?gene=F1SLY1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21074", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21074", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21074:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21074:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25805", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25805", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134795", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134795", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BHG6", "url": "https://www.uniprot.org/uniprotkb/A0A287BHG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5T7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5T7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5T7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5T7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLY1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLY1-1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDQEKKSDAQNVVDSSEEIKDTLGTISIPVSSEELPDSDQTEDNEYELQPSGWDHERPVEDSSDQSLSSLELNDIKQLMEDVMSTEEVSHSPRDSGDSLTKSDNEEQSAKKYSKDSLRFLEKVKAVKESLRTSTKDSSATVKVVLLPVGQEIIMPFKIDIVLKELKEHFSSLLGIPPYSLQIRRAGMILKNQETLLQHGVKPQDVVQVEIFSLHPDLYPIRRIARLSDVSQIITVRVQTGIDEYQEVAVEMIRSEFHKPFLGGFRHKITGIEYHNAGTQTVPKKSPEKLNVFCRDTQTVFQRRKLQQTTNTTSTQMTKIGVYISNVTDKLVTPGKYLSAAEYHARRLEAVIVIQTHYRRWHAKVMVENLRRQKMFRLKWEAQEELRKIKEKEEWMKLDYYRRHNPQTKEDFELLYNALEFWRQEELARINQSFTGAERKAALCELLEKETQIIASIGRHRYIAYTANREASIEAFLDKCSAPKVWRTFDGKIIEMDTQFTIRARELQNIYKCIMLRNISQDERLDVLLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKHENLAGLRKRIATLFFHYIKTPLFNPEVARHLKVPQDPLKFYKKIYFCHSCQLYLPSTEFAVSSTSHRIYRCRHCVNLDNETRKRESFLKHKCLLQRLYNSEAEYEDDSKIAFLMQLQDIQYLTENIWASQSVLSAWKDLNDLVMVRWDKSLEWSPWNCILLTKDEGATHLKLKSIEEGYEPLFIHKIKHKHFLAKNYFSQIPLLASFLLDDGEVDEIRKKHLSEPTSKIIEIQRPSP", "length": 800, "header": "tr|F1SLY1-1|F1SLY1_PIG Isoform 1 of IQ motif and ubiquitin domain containing OS=Sus scrofa OX=9823 GN=IQUB PE=4 SV=2 CANONICAL=F1SLY1-1" }, "isoforms": [ { "isoform_ac": "A0A287BHG6-1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1/entry#A0A287BHG6-1", "sequence": { "sequence": "MSDQEKKSDAQNVVDSSEEIKDTLGTISIPVSSEELPDSDQTEDNEYELQPSGWDHERPVEDSSDQSLSSLELNDIKQLMEDVMSTEEVSHSPRDSGDSLTKSDNEEQSAKKYSKDSLRFLEKVKAVKESLRTSTKDSSATGMILKNQETLLQHGVKPQDVVQVEIFSLHPDLYPIRRIARLSDVSQIITVRVQTGIDEYQEVAVEMIRSEFHKPFLGGFRHKITGIEYHNAGTQTVPKKSPEKLNVFCRDTQTVFQRRKLQQTTNTTSTQMTKIGVYISNVTDKLVTPGKYLSAAEYHARRLEAVIVIQTHYRRWHAKVMVENLRRQKMFRLKWEAQEELRKIKEKEEWMKLDYYRRHNPQTKEDFELLYNALEFWRQEELARINQSFTGAERKAALCELLEKETQIIASIGRHRYIAYTANREASIEAFLDKCSAPKVWRTFDGKIIEMDTQFTIRARELQNIYKCIMLRNISQDERLDVLLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKHENLAGLRKRIATLFFHYIKTPLFNPEVARHLKVPQDPLKFYKKIYFCHSCQLYLPSTEFAVSSTSHRIYRCRHCVNLDNETRKRESFLKHKCLLQRLYNSEAEYEDDSKIAFLMQLQDIQYLTENIWASQSVLSAWKDLNDLVMVRWDKSLEWSPWNCILLTKDEGATHLKLKSIEEVRKSNFIGELNLIIGIIREKLTAFYSIPRVIYMLMLD", "length": 732, "header": "tr|A0A287BHG6-1|F1SLY1_PIG Computationally mapped isoform of IQ motif and ubiquitin domain containing OS=Sus scrofa OX=9823 GN=IQUB PE=4 SV=2 CANONICAL=F1SLY1-1" }, "locus": { "chromosome": "18", "start_pos": 23954784, "end_pos": 23909901, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044703.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044703.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055979.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055979.2" } ] } }, { "isoform_ac": "A0A5G2R5T7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1/entry#A0A5G2R5T7-1", "sequence": { "sequence": "MSDQEKKSDAQNVVDSSEEIKDTLGTISIPVSSEELPDSDQTEDNEYELQPSGWDHERPVEDSSDQSLSSLELNDIKQLMEDVMSTEEVSHSPRDSGDSLTKSDNEEQSAKKYSKDSLRFLEKVKAVKESLRTSTKDSSATVKVVLLPVGQEIIMPFKIDIVLKELKEHFSSLLGIPPYSLQIRRAGMILKNQETLLQHGVKPQDVVQVEIFSLHPDLYPIRRIARLSDVSQIITVRVQTGIDEYQEVAVEMIRSEFHKPFLGGFRHKITGIEYHNAGTQTVPKKSPEKLNVFCRDTQTVFQRRKLQQTTNTTSTQMTKIGVYISNVTDKLVTPGKYLSAAEYHARRLEAVIVIQTHYRRWHAKVMVENLRRQKMFRLKWEAQEELRKIKEKEEWMKLDYYRRHNPQTKEDFELLYNALEFWRQEELARINQSFTGAERKAALCELLEKETQIIASIGRHRYIAYTANREASIEAFLDKCSAPKVWRTFDGKIIEMDTQFTIRARELQNIYKCIMLRNISQDERLDVLLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKHENLAGLRKRIATLFFHYIKTPLFNPEVARHLKVPQDPLKFYKKIYFCHSCQLYLPSTEFAVSSTSHRIYRCRHCVNLDNETRKRESFLKHKCLLQRLYNSEAEYEDDSKIAFLMQLQDIQYLTENIWASQSVLSAWKDLNDLVMVRWDKSLEWSPWNCILLTKDEGATHLKLKSIEEVVGCPVVVFLI", "length": 751, "header": "tr|A0A5G2R5T7-1|F1SLY1_PIG Computationally mapped isoform of IQ motif and ubiquitin domain containing OS=Sus scrofa OX=9823 GN=IQUB PE=4 SV=1 CANONICAL=F1SLY1-1" }, "locus": { "chromosome": "18", "start_pos": 24011008, "end_pos": 23909901, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072953.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072953.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071690.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071690.1" } ] } }, { "isoform_ac": "F1SLY1-1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1/entry#F1SLY1-1", "sequence": { "sequence": "MSDQEKKSDAQNVVDSSEEIKDTLGTISIPVSSEELPDSDQTEDNEYELQPSGWDHERPVEDSSDQSLSSLELNDIKQLMEDVMSTEEVSHSPRDSGDSLTKSDNEEQSAKKYSKDSLRFLEKVKAVKESLRTSTKDSSATVKVVLLPVGQEIIMPFKIDIVLKELKEHFSSLLGIPPYSLQIRRAGMILKNQETLLQHGVKPQDVVQVEIFSLHPDLYPIRRIARLSDVSQIITVRVQTGIDEYQEVAVEMIRSEFHKPFLGGFRHKITGIEYHNAGTQTVPKKSPEKLNVFCRDTQTVFQRRKLQQTTNTTSTQMTKIGVYISNVTDKLVTPGKYLSAAEYHARRLEAVIVIQTHYRRWHAKVMVENLRRQKMFRLKWEAQEELRKIKEKEEWMKLDYYRRHNPQTKEDFELLYNALEFWRQEELARINQSFTGAERKAALCELLEKETQIIASIGRHRYIAYTANREASIEAFLDKCSAPKVWRTFDGKIIEMDTQFTIRARELQNIYKCIMLRNISQDERLDVLLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKHENLAGLRKRIATLFFHYIKTPLFNPEVARHLKVPQDPLKFYKKIYFCHSCQLYLPSTEFAVSSTSHRIYRCRHCVNLDNETRKRESFLKHKCLLQRLYNSEAEYEDDSKIAFLMQLQDIQYLTENIWASQSVLSAWKDLNDLVMVRWDKSLEWSPWNCILLTKDEGATHLKLKSIEEGYEPLFIHKIKHKHFLAKNYFSQIPLLASFLLDDGEVDEIRKKHLSEPTSKIIEIQRPSP", "length": 800, "header": "tr|F1SLY1-1|F1SLY1_PIG Isoform 1 of IQ motif and ubiquitin domain containing OS=Sus scrofa OX=9823 GN=IQUB PE=4 SV=2 CANONICAL=F1SLY1-1" }, "locus": { "chromosome": "18", "start_pos": 23959453, "end_pos": 23909901, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018081.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018081.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017592.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017592.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R5T7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5T7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513386", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513386", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IJP6-1", "protein_name": "IQ motif and ubiquitin-like domain-containing protein isoform X1", "gene_name": "iqub", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSEKECETVNLEEQKMSSEAIQIETEEADEDQDVEHTQEISVDVITNPDTLLLEENSAEPTSEDQRQQDDINKQGSENKIISSNDVGNSTATVKILLMPERHMITVAFTIGLTILDLKKHFSFEMRVPYDIIQITLDEKNVNDDQTLMDIGVQPHGMIQFEMSSLDPENYPMRPVKPQQEYNMPDVITVRVQTEADTYQDVVVEIERATQGKAFLGGYRHKLTNAEYHHAAIQTVPKKRPDRGIEMFSRDTQTVKPSKNQAQQCSRNAATQMRKIGCFVSNMEDKLISPGTYITAEEYHSKRLRAVITLQSYVRRWLAKCFTDSLRQAKEQRLAWLENEKRRKKEEKEKQIRDEYQRRMNPETKGDFDLLYNALKKWRIEEEEHINVTLSGAERKAALCALLEQETQFISSIERHRMAAATRNQEKAIKAFLNKCAEPKKWRAFDGKVTEMDTQFTIKAKELRDLYSSITQAHFTKDERLDVLLTLKHTVKEHKCKLAQEIVDLADREMDLLMRGMKKSNLEGLRKRISTLFLQYIKTPEFNPQVSRHLRVPRDPADLKKNIYLCRGCNEYQSSTNFSLKTNESAVGICRRCMELDNEARRREDFSLYKNILRCLRDTEAESSPGAKVTYLLQDQDLRYLVDFLWGAQSALSGWKDLHDLQFVRWEKHLDWSPWNCILLTKDEAAAHIKLENIEKAYDLVVIRNVKQKHTLARKYFSQIPAMAECLHGAEIQPAALSNLLVSKPITEATK", "length": 750 }, "evidence": [ { "id": "F1SLY1", "url": "https://omabrowser.org/oma/group/F1SLY1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0XCN0-1", "protein_name": "IQ motif and ubiquitin domain containing", "gene_name": "IQUB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEGASGSCPFAVPAGTRAAEQHPAGPRQAGSTEPSDEEPPGEGLDHHEVMGDGDQGVLEPEGPFSASPENASPVASTNSSTLPELIRSEREEETSRNAVLSENVTSSTGTGSVIEGTQTVMWSRAEFHETTQSEKLCLEVLPSKAAQQDYHMPDVIAVRVQMDSDSFHDVAVKIERPTFRKPFLGGFKNRVTGVEFHNAGSQTVPKKRPEKGTTLFCRETQTVFERNRYQQTTNPTSTQMTKRGLYVSNMSDKLITPGKYLTAEEYHKRRLEAVIVLQKYFRRWHARNVVQNLKEKKRLRLAWEAQEELQRKKEKEDKLRMEQERKLNPKTKEDFELLYHALELWRQEETERINRTLTGAERKAALCGLLEQETELIASIGRHKLNADQDNQQKAVLRFLDKCAQPKRWKACDGKITEMDTQYTLRARELLEIYRSVSMNDIPKDERRDVLLLLRGTVKEHECKLTEEIVELIDRELDLMAREVKECNLEGLRKRICTLFLQYIKIPKFNPEVAKILKVPPDPLKLYKNIHFCRSCENYLPASEFPIPANSRTIGRCHLCCKLDNEARRRESFLKYRLILESLRKSEADYQDDATIVFLVQQQHLQYMIENIWGCQSALSACNDLYDLVMVRWDKQQEWSPWNTILLTKDEADAHLKLDNLQEAYEAPFIHGIKHKHIRAKKYFAQIPVMTSLFHRSDKQANAS", "length": 704 }, "evidence": [ { "id": "F1SLY1", "url": "https://omabrowser.org/oma/group/F1SLY1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MSL8-1", "protein_name": "IQ motif and ubiquitin domain containing", "gene_name": "IQUB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSDQEEEADSQNAVDSSEEREDALGSISIPVPLEEVLESDRTEDYGSELDPSSGGRGKRVDLSDQSVSSLELNDVGQLMDDVMTAKQAEDGGGSLAKSGSVVQSARPYSEASLTFMEKVKAVKESLRISTKDSLATVKVILLPVGQEIVIPFKVDTVLRCLKDHFSPLLGVPAFVLQIRCAGTVLKNHETLLQHGIKPQDVVQVEMFSLHPDLYPVRRIARPAEGSQIITVRVQTGIDQYQEVAVEMIKSDFHKPFLGGFRHKITGIEYHNAGTQTVPKKIPEKPNAFCRDTQTVFQKGRLQQTTNTTSTQMTKIGVYVSNITDKLVKPGKYVSAAEYHAKRLQAIIVIQTYYRRWHAKVVVEGLRRQKMFRLQWEAEEEHRKIREKEEWMKLDYYRRHNPQRKEDFELLYNALELWRQEELTRINQFFTGAERKAALCELLEKETQIIASIGRHRYITYTENQEAEIQSFLDKCSAPKTWRRFDGKIIDMDTQFTIRARELQNIYNCIMLKNVSQDERLDVLLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKHQNLEGLRKRIATLFFHYIKTPLFNPEVARHLKVPQDPLKFYKKIYFCHSCQLYLPSTEFAVSSTSHRIYHCRQCINLDNESRKRESYLKYKCLLQRLYCSEADYEDGSEIAFLIQLQDIQYLTENIWASQSVLSAWKDLNDLVMVRWDKSVEWSPWNCILLTKDEGATHLKLKSIEEGYEPLFIHKIKHKHFLAKNYFSQIPLLASFLLDDGEVEEIRKKHQSEPTTKILEVHRPGP", "length": 795 }, "evidence": [ { "id": "F1SLY1", "url": "https://omabrowser.org/oma/group/F1SLY1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q45GW3-1", "protein_name": "IQ motif and ubiquitin-like domain-containing protein", "gene_name": "Iqub", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSDTEENVLDSPASGEAAGEVISIPGPTDEAEESDISPEQEYEIEGFTTESEETVEHYSDLSVSTPKSYDSKPRDEVVSLGSATDSHEQEYRLGDLGGDQRSEEDEMSFLYKIKAIKENLQSSVKECIATVKIVLIPAGQEIVMPFRVDAPFRFLKEHFAHLLRIPHHVLQMAYTGISVGNNESLIQYGVKPREIVQMNVFSSEPDQYPVRRIEGLSEGSKIITVTIQTGIERYEEVAVEIVKSDFHKPFLGGFRHKITGLEYHNAGTQTVPKKIPEKDNLFCRDTQTVFQKKKLQQTMNTTSTQMTKIGVYVSNMTDKLLTPGSYFSAAEYHARRLNAVIVIQTAYRRWHAKCYVDSLRLQKKMRLEWEKEEELKKIREKEEWIRMDYYRRHNPKTTEDFELLFNALELWRQEEVTQVEQYSSEAERKAALCELLEKETQIIASIGRHRYVAQLERQDVATQAFLDKCSASNTWRRPDGQTVEMDTQFTIRARELQSIYKCILLKNLSQDERLDILLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKSHNLEGLRKRITTLFIHYIKTPLFNPEVAKHLKVPQDPLKFYDKIYFCHSCQMYLPSVEFSVSPTSHRVYRCRHCINLENETQRRESFLKYKCLLQRLYFSEANYEDNSHIAYLMQLQDIKYLTENIWASQSALSAWDDLNDLVMVRWNKHVEWSPWNCILLTKDEGTAHLKLESIEKGYGRLFIHKIKHKHILAKNYFSQVPVLASLILKDDEIEAIRSKYSTENPPKIIVPHGIVPN", "length": 790 }, "evidence": [ { "id": "F1SLY1", "url": "https://omabrowser.org/oma/group/F1SLY1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CDK3-1", "protein_name": "IQ motif and ubiquitin-like domain-containing protein", "gene_name": "Iqub", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDPEEERVADSTAHYEEAGKVISIPRPSDEAEGSDVMPEQDDEVQELTTESEENVERHSEFSLSTPKSDDSKPREEVTSLGSASGSQDQDYRLLDYQKGEDDELLFLHKIKAIKETLQTSVRESIATVKIVLIPAGQEIIMPFRVDAPFRFLKEHFAHLLHIPHYVLQITHEGIIVGNNESLIQYGIKPQEIVQVEVFSTLPDQYPVRRIEGLSEGSQIITVTIQTSIDRYEEVAVEIIKSDFHKPFLGGFRHKITGLEYHNAGTQTVPRKIPEKDNLFCRDTQTVFQKKKLQQTTNTTSTQMTKIGVYVSNMTDKLLKPGNYFSAAEYHARRLHAVIVIQTSYRRWHAKRYVESLRKQKKLRLEWEEEQELLKIQEKEEWIRMDYYRRHNPKTTEDFELLYNALELWRQEEVEQICHYSSEAERKAALCELLEKETQMIASIGRHRSAARMERQDAAIQAFLDKCSAPNVWRRGDGKTIEMDTQFTIRARELQSIYKCILLKDLSQDERLDILLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKPHNLEGLRKRITTLFIHYIKTPLFNPEVAKYLKVPQDPLKFYDTIYFCHSCQNYLPSVEFSVSPTSHRVYRCRHCINLENETQRRESFLKYKCLLQRLYYSEADYGDNSQIAFLMQLQDIKYLTENIWASQSALSAWDDLNDLVMVRWDKHVEWSPWNCILLTKDESTAHLRLPSIEKGYGHHFVHKIKHKHILAKNYFSQIPTLASLILNDDEVEDIRSKHSTKSPPKIIITRRIQPH", "length": 788 }, "evidence": [ { "id": "F1SLY1", "url": "https://omabrowser.org/oma/group/F1SLY1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NA54-1", "protein_name": "IQ motif and ubiquitin-like domain-containing protein", "gene_name": "IQUB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSNQQEKYEAQNIVNSTEESDDAFDTVTIPVPSEEPQESDQTEEHESGIEQFSESHAIHVEEQSDQSFSSLEPDNEQLMEEVISPRQVSYTPQHHEKQYAMQRPNDDSLAFLDKIKSVKESLQESVEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDLYPVRRIDGLTDVSQIITVTVQTGLDQYQQVPVEIVKSDFHKPFLGGFRHKVTGVEYHNAGTQTVPKRIPERLSIFCRDTQTVFQKKNLQQTTNTTSTQMTNIGVYVSNMTDKLVTPGKYFSAAEYHAQRLKAVIVIQTYYRQWHAKIFVENLRRQKSLRLEWETQQELRKIREKEEWIKLDYHRRHNPKTNEDFEFLYNALEFWRQEELTRINQSFTGAERKAALCELLEKETQIIASIGRHRYIAYMANQEAAIQAFLDKCSAPKIWRTPNGKTIEMDTQFTIRARELQNIYKCIMLKNISQDERLDVLLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKHHNLEGLRKRIATLFFHYIKTPLFNPEVAKYLKVPQDPLKFYKKIYFCHSCQLYLPSTEFSVSSTSRRIYRCRNCINLQNEAQKRESFLKYKCLLQQLYYTEADYEDDSKIAFLMQLQDIQYLTENIWASQSVLSACDNLSDLVMVRWNKSLEWSPWNCILLTKDEAAAHLKLTSIEEGYERSFIHKIKHKHILAKNYFSQVPVLASFILDDGEIDEIRWKYHSDTTPKIIESQRPPH", "length": 791 }, "evidence": [ { "id": "F1SLY1", "url": "https://omabrowser.org/oma/group/F1SLY1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VD15-1", "protein_name": "IQ motif and ubiquitin-like domain-containing protein", "gene_name": "Dmel\\CG13855", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSAEERAREYVCNVQLHVEPSERPKLPPGCPPPLDSRSTESEPQHSEECCVELENVTVKFRLSDSEILAQVYPNCMLLGEIKQDLARKFEVAPEWLVLRQDNRILCNSVPLNSTALDEFGIHEFQLEMNKEGREDQTSKLDLDVYYDKHRLADFITVHISGDDTQDGQSKTVVVEIENAAIVKPFLCGYRDQKTGKEYLDAFTQTGPYFDKMKYRKYKTRDTQTWEQKEKTLNTAHEQSVQCHLDGINILYVSAANDFTIVPGKYQTFAQKERAERKLEKILLIQRNWRRWILWKYIHLRAQEYRRLVQNREHEDERYEKCVEQRMERHRVIKQFPRNKDDFDLLYAEVARWKKAELKRITANYEGPARIAEVNILLDKEIQLLNGVERQRNLVYKAMEDFRKDQLLKEMGKPIEWVGYKDSKIHMDLLSTQRVRFLTEIYKDLRKPRSKEDRLDFIRQVMAVLTEETCFPHFPELFDLFDREKNLLLYAKSFDVEILRKRQTMLFFDLIKFQKGEPKQRIPSRMCIVCKKVKTYAEFAIRTRQSHVDTCKHCYYLKLTATENTVYQSILRCIHRDERKRKCTTSFAFVMQPDDVRHIIDKIWHGHSALSKTENLSELRLPRWNKSDDWAPWNCICLTERETRDHYKIDDIEKVYDPKFVLHIGNLHMLARSLFHTLAAVATEFQETGQWWKVGMNKQRSSKLDAV", "length": 706 }, "evidence": [ { "id": "F1SLY1", "url": "https://omabrowser.org/oma/group/F1SLY1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "radial spoke", "id": "GO:0001534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001534", "evidence": [ { "database": "UniProtKB", "id": "F1SLY1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" } ], "pmid": "" }, { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "F1SLY1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" } ], "pmid": "" }, { "name": "acrosomal vesicle", "id": "GO:0001669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001669", "evidence": [ { "database": "UniProtKB", "id": "F1SLY1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "F1SLY1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1SLY1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SLY1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" } ], "pmid": "" }, { "name": "mating", "id": "GO:0007618", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007618", "evidence": [ { "database": "UniProtKB", "id": "F1SLY1", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 326, "end_pos": 328, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" }, { "start_pos": 642, "end_pos": 644, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLY1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 800, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLY1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLY1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLY1" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 138, "end_pos": 209, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 311, "end_pos": 313 }, { "start_pos": 326, "end_pos": 328 }, { "start_pos": 431, "end_pos": 433 }, { "start_pos": 518, "end_pos": 520 }, { "start_pos": 642, "end_pos": 644 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP12-1", "uniprot_ac": "F1SP12", "uniprot_id": "F1SP12_PIG", "mass": { "chemical_mass": 99118.0, "monoisotopic_mass": 99118.0 }, "refseq": {}, "gene_names": [ { "name": "EPB41L4B", "type": "recommended", "evidence": [ { "id": "F1SP12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ] } ], "protein_names": [ { "name": "Band 4.1-like protein 5", "type": "recommended", "evidence": [ { "id": "F1SP12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP12/entry#names_and_taxonomy" } ] }, { "name": "Erythrocyte membrane protein band 4.1-like 5", "type": "synonym", "evidence": [ { "id": "F1SP12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP12/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a role in the formation and organization of tight junctions during the establishment of polarity in epithelial cells.", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12#function" }, { "database": "UniProtKB", "id": "ARBA00023750", "url": "https://www.uniprot.org/uniprotkb/ARBA00023750#function" }, { "database": "UniProtKB", "id": "A0A287BLH0", "url": "https://www.uniprot.org/uniprotkb/A0A287BLH0#function" }, { "database": "UniProtKB", "id": "A0A5G2QLX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EPB41L4B", "url": "https://www.uniprot.org/uniprotkb/F1SP12", "locus": { "chromosome": "1", "start_pos": 250226595, "end_pos": 250368846, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005446", "url": "https://www.ensembl.org/id/ENSSSCG00000005446" } ] } } ], "crossref": [ { "id": "F1SP12", "url": "https://alphafold.ebi.ac.uk/entry/F1SP12", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005446", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005446", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13186", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13186", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17204", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17204", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000798", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000798", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014847", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014847", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030698", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030698", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23280", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23280", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23280:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23280:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09379", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09379", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09380", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09380", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BLH0", "url": "https://www.uniprot.org/uniprotkb/A0A287BLH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BLH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BLH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP12-1", "url": "https://www.uniprot.org/uniprotkb/F1SP12-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRFLRRTFGRRSMQRYARGAAGRGAAGLGDERDGGPRGPAAAVSTLPAAPGGSVFPASGGPLLTGGAAVHISAAGASKATLYCRVFLLDGTEVSVDLPKHAKGQDLFDQIVYHLDLVETDYFGLQFLDSAQVAHWLDHSKPIKKQMKIGPAYALHFRVKYYSSEPNNLREEFTRYLFVLQLRHDILSGKLKCPYETAVELAALCLQAELGECELPEHTPELVSEFRFIPNQTEAMEYDIFQRWKECRGKSPAQAELSYLNKAKWLEMYGVDMHVVRGRDGCEYSLGLTPTGILIFEGANKIGLFFWPKITKMDFKKSKLTLVVVEDDDQGREQEHTFVFRLDSARTCKHLWKCAVEHHAFFRLRTPGNSKSNRSDFIRLGSRFRFSGRTEYQATHGARLRRSSTFERKPSKRYPSRRHSTFKASNPVIAAQFCSKTNPEVHNYQSQYHPNLHPGQPRWHPHSPNVSYPLPSPGLSSSDRLPFGLEENGGTPFTTKASGRHHHHHHQHQHHTNYGISLTLENKEGPSRSPNSSSKSLTKLSPGGPALFSEAAAHLKKLELETVKAAGPWPALHININKAEEKKVSEKTLQTPLLPSPVADHVKCNILKAQLENASRMSAQVGKEESTFVNINKKSSLQDANVRSPIPIRVETTQPAVEKPEIKPPRVRKLTRQYSFDEDDLPPDLAEAVGATTTPTTATTTATTTQVSVPLASPKVHKLSSPQNSEGKSQLSPGAKSPSDRGGAFTLEPGDLLMDFTEATPLAEPASAPHCAHSRCSPPLSLPLKEETTGVCMHPPIKTRLIKTFPADPVTPFPDPFITGPQFTADFRDSKLQCCPGQSSPLIPAATLRPLTETVSTVQTIYTTRKPVSLAASAETLRQELEREKMMKRLLMTEL", "length": 895, "header": "tr|F1SP12-1|F1SP12_PIG Isoform 1 of Band 4.1-like protein 5 OS=Sus scrofa OX=9823 GN=EPB41L4B PE=4 SV=4 CANONICAL=F1SP12-1" }, "isoforms": [ { "isoform_ac": "A0A287BLH0-1", "url": "https://www.uniprot.org/uniprotkb/F1SP12/entry#A0A287BLH0-1", "sequence": { "sequence": "MRCMKVPRLGVELELQLLAYSTATAMPDPSCICSLHHSSWQCRILNPLKEARDQTCILMDPSQKHAKGQDLFDQIVYHLDLVETDYFGLQFLDSAQVAHWLDHSKPIKKQMKIGPAYALHFRVKYYSSEPNNLREEFTRYLFVLQLRHDILSGKLKCPYETAVELAALCLQAELGECELPEHTPELVSEFRFIPNQTEAMEYDIFQRWKECRGKSPAQAELSYLNKAKWLEMYGVDMHVVRGRDGCEYSLGLTPTGILIFEGANKIGLFFWPKITKMDFKKSKLTLVVVEDDDQGREQEHTFVFRLDSARTCKHLWKCAVEHHAFFRLRTPGNSKSNRSDFIRLGSRFRFSGRTEYQATHGARLRRSSTFERKPSKRYPSRRHSTFKASNPVIAAQFCSKTNPEVHNYQSQYHPNLHPGQPRWHPHSPNVRPSFQDDRPHWKASASGDDSHFDYVHDQNQKNLGGVQSMVYRDKLMTAL", "length": 479, "header": "tr|A0A287BLH0-1|F1SP12_PIG Computationally mapped isoform of Band 4.1-like protein 5 OS=Sus scrofa OX=9823 GN=EPB41L4B PE=4 SV=2 CANONICAL=F1SP12-1" }, "locus": { "chromosome": "1", "start_pos": 250334900, "end_pos": 250289482, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043475.2", "url": "https://www.ensembl.org/id/ENSSSCT00000043475.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056919.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056919.2" } ] } }, { "isoform_ac": "A0A5G2QLX1-1", "url": "https://www.uniprot.org/uniprotkb/F1SP12/entry#A0A5G2QLX1-1", "sequence": { "sequence": "MLRFLRRTFGRRSMQRYARGAAGRGAAGLGDERDGGPRGPAAAVSTLPAAPGGSVFPASGGPLLTGGAAVHISAAGASKATLYCRVFLLDGTEVSVDLPKHAKGQDLFDQIVYHLDLVETDYFGLQFLDSAQVAHWLDHSKPIKKQMKIGPAYALHFRVKYYSSEPNNLREEFTRYLFVLQLRHDILSGKLKCPYETAVELAALCLQAELGECELPEHTPELVSEFRFIPNQTEAMEYDIFQRWKECRGKSPAQAELSYLNKAKWLEMYGVDMHVVRGRDGCEYSLGLTPTGILIFEGANKIGLFFWPKITKMDFKKSKLTLVVVEDDDQGREQEHTFVFRLDSARTCKHLWKCAVEHHAFFRLRTPGNSKSNRSDFIRLGSRFRFSGRTEYQATHGARLRRSSTFERKPSKRYPSRRHSTFKASNPVIAAQFCSKTNPEVHNYQSQYHPNLHPGQPRWHPHSPNVRPSFQDDRPHWKASASGDDSHFDYVHDQNQKNLGGVQSMVYRDKLMTAL", "length": 515, "header": "tr|A0A5G2QLX1-1|F1SP12_PIG Computationally mapped isoform of Band 4.1-like protein 5 OS=Sus scrofa OX=9823 GN=EPB41L4B PE=4 SV=1 CANONICAL=F1SP12-1" }, "locus": { "chromosome": "1", "start_pos": 250368846, "end_pos": 250289482, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074238.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074238.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065020.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065020.1" } ] } }, { "isoform_ac": "F1SP12-1", "url": "https://www.uniprot.org/uniprotkb/F1SP12/entry#F1SP12-1", "sequence": { "sequence": "MLRFLRRTFGRRSMQRYARGAAGRGAAGLGDERDGGPRGPAAAVSTLPAAPGGSVFPASGGPLLTGGAAVHISAAGASKATLYCRVFLLDGTEVSVDLPKHAKGQDLFDQIVYHLDLVETDYFGLQFLDSAQVAHWLDHSKPIKKQMKIGPAYALHFRVKYYSSEPNNLREEFTRYLFVLQLRHDILSGKLKCPYETAVELAALCLQAELGECELPEHTPELVSEFRFIPNQTEAMEYDIFQRWKECRGKSPAQAELSYLNKAKWLEMYGVDMHVVRGRDGCEYSLGLTPTGILIFEGANKIGLFFWPKITKMDFKKSKLTLVVVEDDDQGREQEHTFVFRLDSARTCKHLWKCAVEHHAFFRLRTPGNSKSNRSDFIRLGSRFRFSGRTEYQATHGARLRRSSTFERKPSKRYPSRRHSTFKASNPVIAAQFCSKTNPEVHNYQSQYHPNLHPGQPRWHPHSPNVSYPLPSPGLSSSDRLPFGLEENGGTPFTTKASGRHHHHHHQHQHHTNYGISLTLENKEGPSRSPNSSSKSLTKLSPGGPALFSEAAAHLKKLELETVKAAGPWPALHININKAEEKKVSEKTLQTPLLPSPVADHVKCNILKAQLENASRMSAQVGKEESTFVNINKKSSLQDANVRSPIPIRVETTQPAVEKPEIKPPRVRKLTRQYSFDEDDLPPDLAEAVGATTTPTTATTTATTTQVSVPLASPKVHKLSSPQNSEGKSQLSPGAKSPSDRGGAFTLEPGDLLMDFTEATPLAEPASAPHCAHSRCSPPLSLPLKEETTGVCMHPPIKTRLIKTFPADPVTPFPDPFITGPQFTADFRDSKLQCCPGQSSPLIPAATLRPLTETVSTVQTIYTTRKPVSLAASAETLRQELEREKMMKRLLMTEL", "length": 895, "header": "tr|F1SP12-1|F1SP12_PIG Isoform 1 of Band 4.1-like protein 5 OS=Sus scrofa OX=9823 GN=EPB41L4B PE=4 SV=4 CANONICAL=F1SP12-1" }, "locus": { "chromosome": "1", "start_pos": 250368846, "end_pos": 250229174, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005990.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005990.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005841.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005841.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLX1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" }, { "name": "photoreceptor inner segment", "id": "GO:0001917", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001917", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" }, { "name": "apical part of cell", "id": "GO:0045177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045177", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cytoskeletal protein binding", "id": "GO:0008092", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008092", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" }, { "name": "positive regulation of cell adhesion", "id": "GO:0045785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045785", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" }, { "name": "positive regulation of keratinocyte migration", "id": "GO:0051549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051549", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" }, { "name": "actomyosin structure organization", "id": "GO:0031032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031032", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" }, { "name": "wound healing", "id": "GO:0042060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042060", "evidence": [ { "database": "UniProtKB", "id": "F1SP12", "url": "https://www.uniprot.org/uniprotkb/F1SP12" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 531, "end_pos": 533, "annotation": "n_glycosylation_sequon" }, { "start_pos": 613, "end_pos": 615, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP12-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 895, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP12-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP12" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP12" }, { "id": "PS50057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FERM", "eco_id": "ECO_0000259", "start_pos": 82, "end_pos": 366, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 231, "end_pos": 233 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 465, "end_pos": 467 }, { "start_pos": 531, "end_pos": 533 }, { "start_pos": 613, "end_pos": 615 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKK1-1", "uniprot_ac": "F1SKK1", "uniprot_id": "F1SKK1_PIG", "mass": { "chemical_mass": 32852.0, "monoisotopic_mass": 32852.0 }, "refseq": { "ac": "XP_003483226", "name": "mitochondrial carnitine/acylcarnitine carrier protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483226" }, "gene_names": [ { "name": "SLC25A20", "type": "recommended", "evidence": [ { "id": "F1SKK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKK1" } ] }, { "name": "SLC25A20", "type": "synonym", "evidence": [ { "id": "XP_003483226", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483226" } ] } ], "protein_names": [ { "name": "Mitochondrial carnitine/acylcarnitine carrier protein", "type": "recommended", "evidence": [ { "id": "F1SKK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKK1/entry#names_and_taxonomy" } ] }, { "name": "Carnitine/acylcarnitine translocase", "type": "synonym", "evidence": [ { "id": "F1SKK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKK1/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 25 member 20", "type": "synonym", "evidence": [ { "id": "F1SKK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKK1/entry#names_and_taxonomy" } ] }, { "name": "mitochondrial carnitine/acylcarnitine carrier protein", "type": "synonym", "evidence": [ { "id": "XP_003483226", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483226" } ] } ], "function": [ { "annotation": "Mediates the electroneutral exchange of acylcarnitines (O-acyl-(R)-carnitine or L-acylcarnitine) of different acyl chain lengths (ranging from O-acetyl-(R)-carnitine to long-chain O-acyl-(R)-carnitines) with free carnitine ((R)-carnitine or L-carnitine) across the mitochondrial inner membrane, via a ping-pong mechanism. Key player in the mitochondrial oxidation pathway, it translocates the fatty acids in the form of acylcarnitines into the mitochondrial matrix, where the carnitine palmitoyltransferase 2 (CPT-2) activates them to undergo fatty acid beta-oxidation. Catalyzes the unidirectional transport (uniport) of carnitine at lower rates than the antiport (exchange).", "evidence": [ { "database": "UniProtKB", "id": "F1SKK1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1#function" }, { "database": "UniProtKB", "id": "ARBA00056740", "url": "https://www.uniprot.org/uniprotkb/ARBA00056740#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKK1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC25A20", "url": "https://www.uniprot.org/uniprotkb/F1SKK1", "locus": { "chromosome": "13", "start_pos": 31523821, "end_pos": 31553286, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011366", "url": "https://www.ensembl.org/id/ENSSSCG00000011366" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011366", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011366", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524459", "url": "https://www.ncbi.nlm.nih.gov/gene/100524459", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050567", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050567", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524459", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524459", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NWAVGIP", "url": "https://omabrowser.org/oma/group/NWAVGIP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKK1", "url": "https://www.orthodb.org/?gene=F1SKK1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45624", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45624", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45624:SF56", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45624:SF56", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00153", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00153", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-200425", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-200425", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003483226", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483226", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "34959", "url": "https://www.rhea-db.org/rhea/34959", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "49908", "url": "https://www.rhea-db.org/rhea/49908", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "49912", "url": "https://www.rhea-db.org/rhea/49912", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "49916", "url": "https://www.rhea-db.org/rhea/49916", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "49920", "url": "https://www.rhea-db.org/rhea/49920", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "49924", "url": "https://www.rhea-db.org/rhea/49924", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1T003", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T003", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T003-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T003-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKK1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKK1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADQAKPISPLKNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLMREGVRGLYKGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQIFAAGMLSGVFTTGIMTPGERVKCLLQIQASSGETKYNGALDCAKKLYRESGIRGIYKGTVLTLMRDVPASGMYFMTYEWLKNTLTPEGKSVSELSVPRILLAGGIAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLKELIRNEGITSLYKGFNAVMIRAFPANAACFLGFEVAMKFLNWITPNL", "length": 301, "header": "tr|F1SKK1-1|F1SKK1_PIG Isoform 1 of Mitochondrial carnitine/acylcarnitine carrier protein OS=Sus scrofa OX=9823 GN=SLC25A20 PE=3 SV=1 CANONICAL=F1SKK1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T003-1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1/entry#A0A4X1T003-1", "sequence": { "sequence": "MADQAKPISPLKNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLMREIQASSGETKYNGALDCAKKLYRESGIRGIYKGTVLTLMRDVPASGMYFMTYEWLKNTLTPEGKSVSELSVPRILLAGGIAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLKELIRNEGITSLYKGFNAVMIRAFPANAACFLGFEVAMKFLNWITPNL", "length": 228, "header": "tr|A0A4X1T003-1|F1SKK1_PIG Computationally mapped isoform of Mitochondrial carnitine/acylcarnitine carrier protein OS=Sus scrofa OX=9823 GN=SLC25A20 PE=3 SV=1 CANONICAL=F1SKK1-1" }, "locus": { "chromosome": "13", "start_pos": 31553183, "end_pos": 31524586, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075816.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075816.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061830.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061830.1" } ] } }, { "isoform_ac": "F1SKK1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1/entry#F1SKK1-1", "sequence": { "sequence": "MADQAKPISPLKNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLMREGVRGLYKGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQIFAAGMLSGVFTTGIMTPGERVKCLLQIQASSGETKYNGALDCAKKLYRESGIRGIYKGTVLTLMRDVPASGMYFMTYEWLKNTLTPEGKSVSELSVPRILLAGGIAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLKELIRNEGITSLYKGFNAVMIRAFPANAACFLGFEVAMKFLNWITPNL", "length": 301, "header": "tr|F1SKK1-1|F1SKK1_PIG Isoform 1 of Mitochondrial carnitine/acylcarnitine carrier protein OS=Sus scrofa OX=9823 GN=SLC25A20 PE=3 SV=1 CANONICAL=F1SKK1-1" }, "locus": { "chromosome": "13", "start_pos": 31553183, "end_pos": 31524586, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012444.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012444.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012119.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012119.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T003", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T003" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524459", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524459", "resource": "KEGG Pathway" }, { "id": "R-SSC-200425", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-200425", "resource": "Reactome", "description": "Carnitine shuttle" } ], "orthologs": [ { "uniprot_canonical_ac": "G3IB81-1", "protein_name": "Mitochondrial carnitine/acylcarnitine carrier protein", "gene_name": "Slc25a20", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MADEPKPISPLKNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTIDCFRKTLIREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKSPEDTLNYPQLFAAGMLSGVFTTGIMTPGERIKCLLQIQASTGETKYTGTLDCAKKLYQEFGIRGFYKGTVLTLMRDVPASGMYFMTYEWLKNLFTPEGKSVSDLSVPRILVAGGFAGIFNWAVAIPPDVLKSRFQTAPPGKYPHGFRDVLRELIRDEGVASLYKGFNAVMIRAFPANAACFLGFEIAMKILNWIVPNL", "length": 301 }, "evidence": [ { "id": "F1SKK1", "url": "https://omabrowser.org/oma/group/F1SKK1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O43772-1", "protein_name": "Mitochondrial carnitine/acylcarnitine carrier protein", "gene_name": "SLC25A20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADQPKPISPLKNLLAGGFGGVCLVFVGHPLDTVKVRLQTQPPSLPGQPPMYSGTFDCFRKTLFREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKHPEDVLSYPQLFAAGMLSGVFTTGIMTPGERIKCLLQIQASSGESKYTGTLDCAKKLYQEFGIRGIYKGTVLTLMRDVPASGMYFMTYEWLKNIFTPEGKRVSELSAPRILVAGGIAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLRELIRDEGVTSLYKGFNAVMIRAFPANAACFLGFEVAMKFLNWATPNL", "length": 301 }, "evidence": [ { "id": "F1SKK1", "url": "https://omabrowser.org/oma/group/F1SKK1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q12289-1", "protein_name": "Mitochondrial carnitine carrier", "gene_name": "CRC1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSSDTSLSESSLLKEESGSLTKSRPPIKSNPVRENIKSFVAGGVGGVCAVFTGHPFDLIKVRCQNGQANSTVHAITNIIKEAKTQVKGTLFTNSVKGFYKGVIPPLLGVTPIFAVSFWGYDVGKKLVTFNNKQGGSNELTMGQMAAAGFISAIPTTLVTAPTERVKVVLQTSSKGSFIQAAKTIVKEGGIASLFKGSLATLARDGPGSALYFASYEISKNYLNSRQPRQDAGKDEPVNILNVCLAGGIAGMSMWLAVFPIDTIKTKLQASSTRQNMLSATKEIYLQRGGIKGFFPGLGPALLRSFPANAATFLGVEMTHSLFKKYGI", "length": 327 }, "evidence": [ { "id": "F1SKK1", "url": "https://omabrowser.org/oma/group/F1SKK1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q93XM7-1", "protein_name": "Mitochondrial carnitine/acylcarnitine carrier-like protein", "gene_name": "BOU", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAWKDLASGTVGGAAQLVVGHPFDTIKVKLQSQPTPAPGQLPRYTGAIDAVKQTVASEGTKGLYKGMGAPLATVAAFNAVLFTVRGQMEGLLRSEAGVPLTISQQFVAGAGAGFAVSFLACPTELIKCRLQAQGALAGASTTSSVVAAVKYGGPMDVARHVLRSEGGARGLFKGLFPTFAREVPGNATMFAAYEAFKRFLAGGSDTSSLGQGSLIMAGGVAGASFWGIVYPTDVVKSVLQVDDYKNPRYTGSMDAFRKILKSEGVKGLYKGFGPAMARSVPANAACFLAYEMTRSSLG", "length": 300 }, "evidence": [ { "id": "F1SKK1", "url": "https://omabrowser.org/oma/group/F1SKK1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VQG4-1", "protein_name": "Congested-like trachea protein", "gene_name": "colt", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTTTENVSTERKANPVKSFLTGGFGGICNVLSGHPLDTIKVRLQTMPRPAPGEQPLYRGTFDCAAKTIKNEGVRGLYKGMSAPLTGVAPIFAMCFAGYALGKRLQQRGEDAKLTYPQIFVAGSFSGLFSTLIMAPGERIKVLLQTQQGQGGERKYNGMIDCAGKLYKEGGLRSVFKGSCATMLRDLPANGLYFLVYEALQDVAKSKSETGQISTASTIFAGGVAGMAYWILGMPADVLKSRLQSAPEGTYKHGIRSVFKDLIVKDGPLALYRGVTPIMLRAFPANAACFFGIELANKFFNIVAPNF", "length": 306 }, "evidence": [ { "id": "F1SKK1", "url": "https://omabrowser.org/oma/group/F1SKK1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Z2Z6-1", "protein_name": "Mitochondrial carnitine/acylcarnitine carrier protein", "gene_name": "Slc25a20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADEPKPISPFKNLLAGGFGGMCLVFVGHPLDTVKVRLQTQPPSLSGQPPMYSGTLDCFRKTLMREGITGLYRGMAAPIIGVTPMFAVCFFGFGLGKKLQQKSPEDELSYPQLFTAGMLSGVFTTGIMTPGERIKCLLQIQASSGENKYSGTLDCAKKLYQEFGIRGFYKGTVLTLMRDVPASGMYFMTYEWLKNLFTPEGKSVSDLSVPRILVAGGFAGIFNWAVAIPPDVLKSRFQTAPPGKYPNGFRDVLRELIREEGVTSLYKGFNAVMIRAFPANAACFLGFEIAMKFLNWIAPNL", "length": 301 }, "evidence": [ { "id": "F1SKK1", "url": "https://omabrowser.org/oma/group/F1SKK1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "F1SKK1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1" } ], "pmid": "" }, { "name": "mitochondrial envelope", "id": "GO:0005740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005740", "evidence": [ { "database": "UniProtKB", "id": "F1SKK1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mitochondrial transport", "id": "GO:0006839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006839", "evidence": [ { "database": "UniProtKB", "id": "F1SKK1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1" } ], "pmid": "" }, { "name": "carnitine shuttle", "id": "GO:0006853", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006853", "evidence": [ { "database": "UniProtKB", "id": "F1SKK1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1" } ], "pmid": "" }, { "name": "carnitine transmembrane transport", "id": "GO:1902603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902603", "evidence": [ { "database": "UniProtKB", "id": "F1SKK1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "O-acyl-L-carnitine transmembrane transporter activity", "id": "GO:0015227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015227", "evidence": [ { "database": "UniProtKB", "id": "F1SKK1", "url": "https://www.uniprot.org/uniprotkb/F1SKK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "34959", "name": "", "equation": "(R)-carnitine(in) = (R)-carnitine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "34959", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/34959" } ] }, { "id": "49908", "name": "", "equation": "O-acetyl-(R)-carnitine(in) + (R)-carnitine(out) = O-acetyl-(R)-carnitine(out) + (R)-carnitine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "49908", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/49908" } ] }, { "id": "49912", "name": "", "equation": "O-propanoyl-(R)-carnitine(in) + (R)-carnitine(out) = O-propanoyl-(R)-carnitine(out) + (R)-carnitine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "49912", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/49912" } ] }, { "id": "49916", "name": "", "equation": "O-hexadecanoyl-(R)-carnitine(in) + (R)-carnitine(out) = O-hexadecanoyl-(R)-carnitine(out) + (R)-carnitine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "49916", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/49916" } ] }, { "id": "49920", "name": "", "equation": "O-octanoyl-(R)-carnitine(in) + (R)-carnitine(out) = O-octanoyl-(R)-carnitine(out) + (R)-carnitine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "49920", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/49920" } ] }, { "id": "49924", "name": "", "equation": "an O-acyl-(R)-carnitine(in) + (R)-carnitine(out) = an O-acyl-(R)-carnitine(out) + (R)-carnitine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "49924", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/49924" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHS9-1", "uniprot_ac": "F1SHS9", "uniprot_id": "F1SHS9_PIG", "mass": { "chemical_mass": 36556.0, "monoisotopic_mass": 36556.0 }, "refseq": { "ac": "XP_003134892", "name": "homeobox protein Hox-A1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134892" }, "gene_names": [ { "name": "HOXA1", "type": "recommended", "evidence": [ { "id": "F1SHS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" } ] }, { "name": "HOXA1", "type": "synonym", "evidence": [ { "id": "XP_003134892", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134892" } ] } ], "protein_names": [ { "name": "Homeobox A1", "type": "synonym", "evidence": [ { "id": "F1SHS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHS9/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein Hox-A1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003134892", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134892" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHS9", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HOXA1", "url": "https://www.uniprot.org/uniprotkb/F1SHS9", "locus": { "chromosome": "18", "start_pos": 45480152, "end_pos": 45477461, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016707", "url": "https://www.ensembl.org/id/ENSSSCG00000016707" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016707", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016707", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520162", "url": "https://www.ncbi.nlm.nih.gov/gene/100520162", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520162", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520162", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SAQTFDW", "url": "https://omabrowser.org/oma/group/SAQTFDW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1TUQ4", "url": "https://www.orthodb.org/?gene=A0A4X1TUQ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SHS9", "url": "https://www.orthodb.org/?gene=F1SHS9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45946", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45946", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45946:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45946:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134892", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134892", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TUQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TUQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHS9", "url": "https://www.uniprot.org/uniprotkb/F1SHS9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHS9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHS9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNARMSSFLEYPILSGGDSGTCSARAYPSDHGITTFQSCAVSANSCGGDDRFLVGRGVQISPPHHHHHHHHHHHPQPATYQTPGNLGVSYSHSSCGPSYGAQNFGAPYSSYALNQEAEVSGGYPTCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYVGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGSEEKAEESSEKSSSSPCVPSPGSATSDTLPTSH", "length": 336, "header": "tr|F1SHS9-1|F1SHS9_PIG Isoform 1 of Homeobox A1 OS=Sus scrofa OX=9823 GN=HOXA1 PE=3 SV=1 CANONICAL=F1SHS9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TUQ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHS9/entry#A0A4X1TUQ4-1", "sequence": { "sequence": "MDNARMSSFLEYPILSGGDSGTCSARAYPSDHGITTFQSCAVSANSCGGDDRFLVGRGVQISPPHHHHHHHHHHHPQPATYQTPGNLGVSYSHSSCGPSYGAQNFGAPYSSYALNQEAEPPRSLPLPCIRDVFSSADI", "length": 138, "header": "tr|A0A4X1TUQ4-1|F1SHS9_PIG Computationally mapped isoform of Homeobox A1 OS=Sus scrofa OX=9823 GN=HOXA1 PE=3 SV=1 CANONICAL=F1SHS9-1" }, "locus": { "chromosome": "18", "start_pos": 45478276, "end_pos": 45477660, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058453.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058453.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037164.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037164.1" } ] } }, { "isoform_ac": "F1SHS9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHS9/entry#F1SHS9-1", "sequence": { "sequence": "MDNARMSSFLEYPILSGGDSGTCSARAYPSDHGITTFQSCAVSANSCGGDDRFLVGRGVQISPPHHHHHHHHHHHPQPATYQTPGNLGVSYSHSSCGPSYGAQNFGAPYSSYALNQEAEVSGGYPTCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYVGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGSEEKAEESSEKSSSSPCVPSPGSATSDTLPTSH", "length": 336, "header": "tr|F1SHS9-1|F1SHS9_PIG Isoform 1 of Homeobox A1 OS=Sus scrofa OX=9823 GN=HOXA1 PE=3 SV=1 CANONICAL=F1SHS9-1" }, "locus": { "chromosome": "18", "start_pos": 45479148, "end_pos": 45477660, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018188.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018188.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017697.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017697.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TUQ4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TUQ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520162", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520162", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1B918-1", "protein_name": "Homeobox A1", "gene_name": "HOXA1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDNARMSSFLEYPILSGGDSGTCSARAYPSDHGITTFQSCAVSANSCGSDDRFLVGRGVQISPPHHHHHHHHPQPTTYQTSGNLGVSYSHSSCGPSYSAQNFGAPYSPYALNQEAEVSGGYPSCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKIGEYGYVGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPTGSEEKAEESSEKSSSSPCVPSPGSSTSDTLPTSH", "length": 333 }, "evidence": [ { "id": "F1SHS9", "url": "https://omabrowser.org/oma/group/F1SHS9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HD70-1", "protein_name": "Homeobox protein Hox-A1 isoform X1", "gene_name": "Hoxa1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDNARMSSFLEYPILGSGDSGTCSARAYTSDHGITTFQSCAVSANSCGGDDRFLVGRGVQISSPHHHHHHHPQPSTYQTSGSLGVSYSHSSCGPSYGAQNFSAPYGPYGLNQEADVSGGYSPCAPAVYSGNLSSPMVQHHHHHHHQGYAGGTVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSPASETPSPAQTFDWMKVKRNPPKTGKVGEYGYVGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPPGSDEKAEESSEKSSSSPCVPSPASSTSDTLPTSH", "length": 334 }, "evidence": [ { "id": "F1SHS9", "url": "https://omabrowser.org/oma/group/F1SHS9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O08656-1", "protein_name": "Homeobox protein Hox-A1", "gene_name": "Hoxa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDNARLNSFLEYPILGSGDSGTCSARVYSSDHGITTFQSCAVSANSCGGDDRFLGGRGVQITSPHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGAQNFSAPYGPYGLNQEADVSGGYPPCAPAVYSGNLSSPMVQHHHHHQGYAGGTVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYVGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARSEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPMSPATPPGSDEKTEESSEKSSSSPSAPSPASSTSDTLTTSH", "length": 333 }, "evidence": [ { "id": "F1SHS9", "url": "https://omabrowser.org/oma/group/F1SHS9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q98SI1-1", "protein_name": "Homeobox protein Hox-A1a", "gene_name": "hoxa1a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSTFLDFSSISGGGDGGSGGSCSVRAFHGDHGLSTFQSSCAVRLNSCSGDERFMSNISSQDVINSQPQQAGSYQSPGTLSITYSAHPSYGTQSFCTGYNHYALNQDVESSVSFPQCGPLVYSGNISSTVVQHRHHRHGYSSGNVHLHGQFQYGSATYGNSSDQANLTFVAGCSNPLSPLHVPHHDACCSPLSDGVPTGQTFDWMKVKRNPPKTGKAGEYGFGGQPNTVRTNFSTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPKSLSEQKDGLEKTEDASEKSPSAPSTPSPSPTVEAYSSN", "length": 329 }, "evidence": [ { "id": "F1SHS9", "url": "https://omabrowser.org/oma/group/F1SHS9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "R4GHI8-1", "protein_name": "Homeobox A1", "gene_name": "HOXA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSFLEYPVLGGEAGACAARSYHPEHGITTFQPCAVSAGSCSGEDRFLVGRGVSLSPHRHHHPPAQPAAYQHHGGLGVSYAHPGCPPTYGAQGFGAAYGPYALGQDAELGGGFPPCAPAVYSGSLSSAAAQHPHQGYAGGPAQYVPSPYGQEQQSLPLGTYNHALSPLHAGHQDNSRSPSADTSPPAQTFDWMKVKRNPPKTGKAGEYGFVGQPNTVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATPTGCEEKADDPSEKCCPSPCSASPASCASDPGPAAN", "length": 320 }, "evidence": [ { "id": "F1SHS9", "url": "https://omabrowser.org/oma/group/F1SHS9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1SHS9", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "F1SHS9", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SHS9", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SHS9", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SHS9", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SHS9", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SHS9", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHS9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHS9" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 228, "end_pos": 288, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 270, "end_pos": 272 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK07-1", "uniprot_ac": "F1SK07", "uniprot_id": "F1SK07_PIG", "mass": { "chemical_mass": 19085.0, "monoisotopic_mass": 19085.0 }, "refseq": {}, "gene_names": [ { "name": "NSG2", "type": "recommended", "evidence": [ { "id": "F1SK07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK07" } ] } ], "protein_names": [ { "name": "Neuronal vesicle trafficking associated 2", "type": "synonym", "evidence": [ { "id": "F1SK07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK07/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK07", "url": "https://www.uniprot.org/uniprotkb/F1SK07" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NSG2", "url": "https://www.uniprot.org/uniprotkb/F1SK07", "locus": { "chromosome": "16", "start_pos": 50206076, "end_pos": 50361859, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016979", "url": "https://www.ensembl.org/id/ENSSSCG00000016979" } ] } } ], "crossref": [ { "id": "F1SK07", "url": "https://alphafold.ebi.ac.uk/entry/F1SK07", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016979", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016979", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009431", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009431", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SK07", "url": "https://www.orthodb.org/?gene=F1SK07", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28546", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28546", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28546:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28546:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06387", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06387", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1V917", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V917", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V917-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V917-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK07", "url": "https://www.uniprot.org/uniprotkb/F1SK07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK07-1", "url": "https://www.uniprot.org/uniprotkb/F1SK07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKLNSNPNEKGTKPPSVEDGFQTVPLITPLEVNHLQLPAPEKVIVKTRTEYQPEQKNKGKFRVPKIAEFTVTILVSLALAFLACIVFLVVYKAFTYDHSCPEGFVYKHKRCIPASLDAYYSSQDPSSRSRFYTVISHYSVAKQSTARAIGPWLSAAAVIHEPKPPKTQGH", "length": 171, "header": "tr|F1SK07-1|F1SK07_PIG Isoform 1 of Neuronal vesicle trafficking associated 2 OS=Sus scrofa OX=9823 GN=NSG2 PE=3 SV=4 CANONICAL=F1SK07-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V917-1", "url": "https://www.uniprot.org/uniprotkb/F1SK07/entry#A0A4X1V917-1", "sequence": { "sequence": "MVKLNSNPNEKGTKPPSVEDGFQTVPLITPLEVNHLQLPAPEKVIVKTRTEYQPEQKNKGKFRVPKIAEFTHGTLQFLAPCPCLGPYDQPTMKHERT", "length": 97, "header": "tr|A0A4X1V917-1|F1SK07_PIG Computationally mapped isoform of Neuronal vesicle trafficking associated 2 OS=Sus scrofa OX=9823 GN=NSG2 PE=3 SV=1 CANONICAL=F1SK07-1" }, "locus": { "chromosome": "16", "start_pos": 50360755, "end_pos": 50206079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076309.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076309.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067804.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067804.1" } ] } }, { "isoform_ac": "F1SK07-1", "url": "https://www.uniprot.org/uniprotkb/F1SK07/entry#F1SK07-1", "sequence": { "sequence": "MVKLNSNPNEKGTKPPSVEDGFQTVPLITPLEVNHLQLPAPEKVIVKTRTEYQPEQKNKGKFRVPKIAEFTVTILVSLALAFLACIVFLVVYKAFTYDHSCPEGFVYKHKRCIPASLDAYYSSQDPSSRSRFYTVISHYSVAKQSTARAIGPWLSAAAVIHEPKPPKTQGH", "length": 171, "header": "tr|F1SK07-1|F1SK07_PIG Isoform 1 of Neuronal vesicle trafficking associated 2 OS=Sus scrofa OX=9823 GN=NSG2 PE=3 SV=4 CANONICAL=F1SK07-1" }, "locus": { "chromosome": "16", "start_pos": 50360755, "end_pos": 50302634, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018489.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018489.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017989.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017989.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1V917", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V917" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "F1SK07", "url": "https://www.uniprot.org/uniprotkb/F1SK07" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SK07", "url": "https://www.uniprot.org/uniprotkb/F1SK07" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SK07", "url": "https://www.uniprot.org/uniprotkb/F1SK07" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SK07", "url": "https://www.uniprot.org/uniprotkb/F1SK07" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "clathrin coat assembly", "id": "GO:0048268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048268", "evidence": [ { "database": "UniProtKB", "id": "F1SK07", "url": "https://www.uniprot.org/uniprotkb/F1SK07" } ], "pmid": "" }, { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "F1SK07", "url": "https://www.uniprot.org/uniprotkb/F1SK07" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "clathrin light chain binding", "id": "GO:0032051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032051", "evidence": [ { "database": "UniProtKB", "id": "F1SK07", "url": "https://www.uniprot.org/uniprotkb/F1SK07" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SK07-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 171, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SK07-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SK07" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNJ5-1", "uniprot_ac": "F1SNJ5", "uniprot_id": "F1SNJ5_PIG", "mass": { "chemical_mass": 37400.0, "monoisotopic_mass": 37400.0 }, "refseq": { "ac": "XP_020934349", "name": "3-oxo-5-beta-steroid 4-dehydrogenase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934349" }, "gene_names": [ { "name": "AKR1D1", "type": "recommended", "evidence": [ { "id": "F1SNJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ] }, { "name": "AKR1D1", "type": "synonym", "evidence": [ { "id": "XP_020934349", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934349" } ] } ], "protein_names": [ { "name": "3-oxo-5-beta-steroid 4-dehydrogenase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020934349", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934349" } ] }, { "name": "Aldo-keto reductase family 1 member D1", "type": "synonym", "evidence": [ { "id": "F1SNJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AKR1D1", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5", "locus": { "chromosome": "18", "start_pos": 11416068, "end_pos": 11531726, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016519", "url": "https://www.ensembl.org/id/ENSSSCG00000016519" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016519", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016519", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19109", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19109", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520813", "url": "https://www.ncbi.nlm.nih.gov/gene/100520813", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018170", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018170", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020471", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020471", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520813", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520813", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YCLQKNW", "url": "https://omabrowser.org/oma/group/YCLQKNW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SNJ5", "url": "https://www.orthodb.org/?gene=F1SNJ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11732", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11732", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193368", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193368", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-193775", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193775", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-193807", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193807", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020934349", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934349", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VK97", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VK97-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK97-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYLSAAHHRIPLNDGNSIPIIGLGTFSEPKLTPKGICGTSVKIAIDTGYRHIDGAFIYQNEHEVGEAIREKIAEGKVRREDIFYCGKLWATNLDPEMVRPALERTLKVLQLDYVDLYIIEVPMAFKPGDDNFPKDENGKWLYCKSNLCGTWEALEACKDDGLVKSLGVSNFNRRQLELILNKPGLKYKPVSNQVECHPYFTQQKLLKFCQQHDIVIIAYSPLGTSRNPSWVNVSSPPLLKDELLNSLGKKYNKTAAQVVLRFSIQRGVVVIPKSFTPERIKENFQIFDFSLTEDEMKDIEALNKNVRFVEMLMWRDHPEYPFHDEY", "length": 326, "header": "tr|F1SNJ5-1|F1SNJ5_PIG Isoform 1 of Aldo-keto reductase family 1 member D1 OS=Sus scrofa OX=9823 GN=AKR1D1 PE=1 SV=3 CANONICAL=F1SNJ5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VK97-1", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5/entry#A0A4X1VK97-1", "sequence": { "sequence": "MYLSAAHHRIPLNDGNSIPIIGLGTFSEPKLTPKGICGTSVKIAIDTGYRHIDGAFIYQNEHEVGEAIREKIAEGKVRREDIFYCGKLWATNLDPEMVRPALERTLKVLQLDYVDLYIIEVPMAFKPGDDNFPKDENGKWLYCKSNLCGTWEVECHPYFTQQKLLKFCQQHDIVIIAYSPLGTSRNPSWVNVSSPPLLKDELLNSLGKKYNKTAAQVVLRFSIQRGVVVIPKSFTPERIKENFQIFDFSLTEDEMKDIEALNKNVRFVEMLMWRDHPEYPFHDEY", "length": 285, "header": "tr|A0A4X1VK97-1|F1SNJ5_PIG Computationally mapped isoform of Aldo-keto reductase family 1 member D1 OS=Sus scrofa OX=9823 GN=AKR1D1 PE=1 SV=1 CANONICAL=F1SNJ5-1" }, "locus": { "chromosome": "18", "start_pos": 11462048, "end_pos": 11417502, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079844.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079844.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072578.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072578.1" } ] } }, { "isoform_ac": "F1SNJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5/entry#F1SNJ5-1", "sequence": { "sequence": "MYLSAAHHRIPLNDGNSIPIIGLGTFSEPKLTPKGICGTSVKIAIDTGYRHIDGAFIYQNEHEVGEAIREKIAEGKVRREDIFYCGKLWATNLDPEMVRPALERTLKVLQLDYVDLYIIEVPMAFKPGDDNFPKDENGKWLYCKSNLCGTWEALEACKDDGLVKSLGVSNFNRRQLELILNKPGLKYKPVSNQVECHPYFTQQKLLKFCQQHDIVIIAYSPLGTSRNPSWVNVSSPPLLKDELLNSLGKKYNKTAAQVVLRFSIQRGVVVIPKSFTPERIKENFQIFDFSLTEDEMKDIEALNKNVRFVEMLMWRDHPEYPFHDEY", "length": 326, "header": "tr|F1SNJ5-1|F1SNJ5_PIG Isoform 1 of Aldo-keto reductase family 1 member D1 OS=Sus scrofa OX=9823 GN=AKR1D1 PE=1 SV=3 CANONICAL=F1SNJ5-1" }, "locus": { "chromosome": "18", "start_pos": 11462048, "end_pos": 11417502, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017987.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017987.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017503.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017503.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VK97", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VK97" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520813", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520813", "resource": "KEGG Pathway" }, { "id": "R-SSC-193368", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193368", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol" }, { "id": "R-SSC-193775", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193775", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts via 24-hydroxycholesterol" }, { "id": "R-SSC-193807", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193807", "resource": "Reactome", "description": "Synthesis of bile acids and bile salts via 27-hydroxycholesterol" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2L9N6-1", "protein_name": "Aldo-keto reductase family 1 member D1 isoform X1", "gene_name": "Akr1d1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNLSATNHQIPLSDGNSIPVIGLGTYSDPRPVPRETYMAVKMAIDQGYRHFDGAYLYHNEHEVGEAIREKIAEGKVKREEIFYCGKLWATDHLPERVRPALERTLQSLKLDYVDLYIIEIPMAFKPGMQEYPRDENGQWLYHKSDLCATWEALEACKDAGLVKSLGVSNFNRRQLELILNKPGLKYKPVSNQVECHPYFTQPKLLKFCQQHDIVIVAYSPLGTCRNPSWVNVSSPSLLKDKLLNSLGKRYNKTAAQIGLRFNIQRGVVVIPKSFNPQRMKENFQIFDFSLTEEEMKDIEALNKNVRFVELLMWSDHPEYPFHDEY", "length": 325 }, "evidence": [ { "id": "F1SNJ5", "url": "https://omabrowser.org/oma/group/F1SNJ5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BBT0-1", "protein_name": "Aldo-keto reductase family 1 member D1", "gene_name": "AKR1D1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MHLSAVYHRIPLSDGNSIPIIGLGTYSEPKSTPKGTCATSVKIAIDTGYRHIDGAYLYQNEHEVGEAIREKIAEGKVQREDIFYCGKLWATNLDPELVRPTLERTLKDLQLDYVDLYIIEIPMAFKPGDDFYPRDENGKWLYHKSNLCATWEALEACKDAGLVKSLGVSNFNRRQLELILNKPGLKYKPVSNQVECHPYFTQPKLLKFCQQHDIVIVAYSPLGTCRNPSWVNVSSPPLLKDPFLNALGKKYNKTAAQVVLRFNIQRGVVVIPKSFNPERIKENFQIFDFSFTEEEMKDIEALNKNIRFVEMLMWCDHPEYPFHDEY", "length": 326 }, "evidence": [ { "id": "F1SNJ5", "url": "https://omabrowser.org/oma/group/F1SNJ5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P31210-1", "protein_name": "Aldo-keto reductase family 1 member D1", "gene_name": "Akr1d1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNLSTANHHIPLNDGNSIPIIGLGTYSDPRPVPGKTFIAVKTAIDEGYRHIDGAYVYRNEHEVGEAIREKVAEGKVKREEIFYCGKLWSTDHDPEMVRPALERTLQTLKLDYIDLYIIEMPMAFKPGEEFYPKDENGRVIYHKSNLCATWEALEACKDAGLVKSLGVSNFNRRQLEVILNKPGLKYKPVTNQVECHPYFTQTKLLEVSASSMTSFIVAYSPLGTCRNPLWVNVSSPPLLKDELLTSLGKKYNKTQAQIVLRFDIQRGLVVIPKSTTPERIKENFQIFDFSLTKEEMKDIEALNKNVRFVEMLMWSDHPEYPFHDEY", "length": 326 }, "evidence": [ { "id": "F1SNJ5", "url": "https://omabrowser.org/oma/group/F1SNJ5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P51857-1", "protein_name": "Aldo-keto reductase family 1 member D1", "gene_name": "AKR1D1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLSAASHRIPLSDGNSIPIIGLGTYSEPKSTPKGACATSVKVAIDTGYRHIDGAYIYQNEHEVGEAIREKIAEGKVRREDIFYCGKLWATNHVPEMVRPTLERTLRVLQLDYVDLYIIEVPMAFKPGDEIYPRDENGKWLYHKSNLCATWEAMEACKDAGLVKSLGVSNFNRRQLELILNKPGLKHKPVSNQVECHPYFTQPKLLKFCQQHDIVITAYSPLGTSRNPIWVNVSSPPLLKDALLNSLGKRYNKTAAQIVLRFNIQRGVVVIPKSFNLERIKENFQIFDFSLTEEEMKDIEALNKNVRFVELLMWRDHPEYPFHDEY", "length": 326 }, "evidence": [ { "id": "F1SNJ5", "url": "https://omabrowser.org/oma/group/F1SNJ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VCX1-1", "protein_name": "Aldo-keto reductase family 1 member D1", "gene_name": "Akr1d1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNLSAAHHQISLSDGNNIPLIGLGTYSDPRPVPGKTYVAVKTAIDEGYRHIDGAYVYHNEHEVGEAIREKIAEGKVKREEIFYCGKLWNTEHVPSMVLPALERTLKALKLDYIDLYIIELPMAFKPGKEIYPRDENGRIIYDKTNLCATWEALEACKDAGLVKSLGVSNFNRRQLELILNKPGLKYKPVTNQVECHPYFTQTKLLKFCQQHDIVIVAHSPLGTCRNPSWVNVSSPPLLNDELLTSLGKKYNKTQAQIVLRFNIQRGIVVIPKSFTPERIKENFQIFDFSLTEEEMKDIDALNKNVRYVELLMWSDHPEYPFHDEY", "length": 325 }, "evidence": [ { "id": "F1SNJ5", "url": "https://omabrowser.org/oma/group/F1SNJ5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" }, { "name": "steroid dehydrogenase activity", "id": "GO:0016229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016229", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" }, { "name": "aldose reductase (NADPH) activity", "id": "GO:0004032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004032", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" }, { "name": "Delta4-3-oxosteroid 5beta-reductase activity", "id": "GO:0047787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047787", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" }, { "name": "ketosteroid monooxygenase activity", "id": "GO:0047086", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047086", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "bile acid biosynthetic process", "id": "GO:0006699", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006699", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" }, { "name": "digestion", "id": "GO:0007586", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007586", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" }, { "name": "cholesterol catabolic process", "id": "GO:0006707", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006707", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" }, { "name": "C21-steroid hormone metabolic process", "id": "GO:0008207", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008207", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" }, { "name": "androgen metabolic process", "id": "GO:0008209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008209", "evidence": [ { "database": "UniProtKB", "id": "F1SNJ5", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNJ5" }, { "id": "PF00248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00248" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NADP-dependent oxidoreductase", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 303, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 232, "end_pos": 234 }, { "start_pos": 252, "end_pos": 254 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIW4-1", "uniprot_ac": "F1SIW4", "uniprot_id": "F1SIW4_PIG", "mass": { "chemical_mass": 43964.0, "monoisotopic_mass": 43964.0 }, "refseq": { "ac": "XP_001928248", "name": "PHD finger protein 7 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928248" }, "gene_names": [ { "name": "PHF7", "type": "recommended", "evidence": [ { "id": "F1SIW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" } ] }, { "name": "PHF7", "type": "synonym", "evidence": [ { "id": "XP_001928248", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928248" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase PHF7", "type": "recommended", "evidence": [ { "id": "F1SIW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW4/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1SIW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW4/entry#names_and_taxonomy" } ] }, { "name": "PHD finger protein 7 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001928248", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928248" } ] } ], "function": [ { "annotation": "E3 ubiquitin-protein ligase which ubiquitinates histone H3 at 'Lys-14'. Required for male fertility, via inhibition of SPOP-mediated BRDT degradation when in the presence of acetylated histone H4 in early condensing spermatids. Stabilization of BRDT allows it to facilitate histone removal in early condensing spermatids and promote the progression of histone-to-protamine exchange. Promotes the expression of steroidogenesis proteins in the testes, and as a result plays a role in maintaining testosterone levels and repressing osteoclastogenesis. Promotes transcription of cardiac enhancer genes by facilitating binding of cardiac transcription factors such as MEF2C and GATA4 to target gene promoters. Ubiquitinates histone H4. Ubiquitinates histone H2A and H3 as part of the nucleosome core particle.", "evidence": [ { "database": "UniProtKB", "id": "F1SIW4", "url": "https://www.uniprot.org/uniprotkb/F1SIW4#function" }, { "database": "UniProtKB", "id": "ARBA00059485", "url": "https://www.uniprot.org/uniprotkb/ARBA00059485#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIW4", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PHF7", "url": "https://www.uniprot.org/uniprotkb/F1SIW4", "locus": { "chromosome": "13", "start_pos": 34565646, "end_pos": 34553816, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011439", "url": "https://www.ensembl.org/id/ENSSSCG00000011439" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011439", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011439", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15496", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15496", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15669", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15669", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152414", "url": "https://www.ncbi.nlm.nih.gov/gene/100152414", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042013", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042013", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152414", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152414", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NNRDEFP", "url": "https://omabrowser.org/oma/group/NNRDEFP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIW4", "url": "https://www.orthodb.org/?gene=F1SIW4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12420", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12420", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12420:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12420:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13771", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13771", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26054", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26054", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928248", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928248", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VMM4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VMM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIW4", "url": "https://www.uniprot.org/uniprotkb/F1SIW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIW4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTIKEKKKKRQRLRKSAKTRRVTQRKPSSGPVCRLCLREPGDPEKLGEFLQKDNLSVHYFCLILSSKLPQRGQSNRGFHGFLPEDIKKEAARASRKICFVCKKKGAAINCQKDHCVRNFHLPCGQERGCLSQFFGEYKSFCGKHRPTQNIQRGNMGEESCVLCCEDLSQASVENIQSPCCSQTIYHRKCIQKYAHTSAKHFFKCPQCNNRDEFPQEMLRMGIHIPDRDAAWELEPGAFSELYQRYQHCDAPICLYEQGRDSFEDEGRWRLILCTTCGSHGTHRDCSSLRSNCKKWECKECAPSAEATDYTPENSGDMPCCSSTFQSREHFCRDTSLEENPGPSWTDWPGPTLLEKPESSGHRRGGHSWKSKGVKIIKCCKKSK", "length": 384, "header": "tr|F1SIW4-1|F1SIW4_PIG Isoform 1 of E3 ubiquitin-protein ligase PHF7 OS=Sus scrofa OX=9823 GN=PHF7 PE=4 SV=1 CANONICAL=F1SIW4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VMM4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIW4/entry#A0A4X1VMM4-1", "sequence": { "sequence": "MKTIKEKKKKRQRLRKSAKTRRVTQRKPSSGPVCRLCLREPGDPEKLGEFLQKDNLSVHYFCLILSSKLPQRGQSNRGFHGFLPEDIKKEAARASRKICFVCKKKGAAINCQKDHCVRNFHLPCGQERGCLSQFFGEYKSFCGKHRPTQNIQRGNMGEESCVLCCEDLSQASVENIQSPCCSQTIYHRKCIQKYAHTSAKHFFKCPQCNNRDEFPQEMLRMGIHIPDRRWRLILCTTCGSHGTHRDCSSLRSNCKKWECKECAPSAEATDYTPENSGDMPCCSSTFQSREHFCRDTSLEENPGPSWTDWPGPTLLEKPESSGHRRGGHSWKSKGVKIIKCCKKSK", "length": 345, "header": "tr|A0A4X1VMM4-1|F1SIW4_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase PHF7 OS=Sus scrofa OX=9823 GN=PHF7 PE=4 SV=1 CANONICAL=F1SIW4-1" }, "locus": { "chromosome": "13", "start_pos": 34565309, "end_pos": 34555705, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078122.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078122.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073824.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073824.1" } ] } }, { "isoform_ac": "F1SIW4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIW4/entry#F1SIW4-1", "sequence": { "sequence": "MKTIKEKKKKRQRLRKSAKTRRVTQRKPSSGPVCRLCLREPGDPEKLGEFLQKDNLSVHYFCLILSSKLPQRGQSNRGFHGFLPEDIKKEAARASRKICFVCKKKGAAINCQKDHCVRNFHLPCGQERGCLSQFFGEYKSFCGKHRPTQNIQRGNMGEESCVLCCEDLSQASVENIQSPCCSQTIYHRKCIQKYAHTSAKHFFKCPQCNNRDEFPQEMLRMGIHIPDRDAAWELEPGAFSELYQRYQHCDAPICLYEQGRDSFEDEGRWRLILCTTCGSHGTHRDCSSLRSNCKKWECKECAPSAEATDYTPENSGDMPCCSSTFQSREHFCRDTSLEENPGPSWTDWPGPTLLEKPESSGHRRGGHSWKSKGVKIIKCCKKSK", "length": 384, "header": "tr|F1SIW4-1|F1SIW4_PIG Isoform 1 of E3 ubiquitin-protein ligase PHF7 OS=Sus scrofa OX=9823 GN=PHF7 PE=4 SV=1 CANONICAL=F1SIW4-1" }, "locus": { "chromosome": "13", "start_pos": 34565309, "end_pos": 34555705, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012519.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012519.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012191.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012191.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VMM4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VMM4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152414", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152414", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QNT5-1", "protein_name": "E3 ubiquitin-protein ligase PHF7", "gene_name": "Phf7", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKTIKEKKKLPRLRKTSRTKKVIQKKLSSSGPVCLLCLQEPGDPEKLGEFLQKESLCVHYFCLILSSKLPQKGQPNRGLHGFMPEDIKKEAVRASKKMCFVCKKKGAAIKCQNDQCVKNFHLPCGQERGCLSQFFGEYKSYCGKHRPTQDIQQGSQREESCVLCCEDLSQTSVENIRSPCCSQAIYHRKCIQKYAHTSAKHFFKCPQCNNREEFPQEMLRMGIHIPDRDAAWELEPGAFSELYQRYQHCDAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRPNSKKWECDECSPASTKDYVCEDSSDIPCCSSTFHPQEHFFRASNLEGNPDSSWTEWLQPSLLEKPESSGGRRSHSWRSKGIRIAKNCKKSK", "length": 382 }, "evidence": [ { "id": "F1SIW4", "url": "https://omabrowser.org/oma/group/F1SIW4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3N059-1", "protein_name": "PHD finger protein 7", "gene_name": "PHF7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKSIKEKKKEYQRLRRSAKTKRVTQRKRSSGPVCRLCLQEPGDPEKLGEFLQKDNLSVHYFCLILSSKLPQRGQSNRGFHGFLPEDIRKEAARASRKICFVCKRKGAAINCQKDQCARNFHLPCGLERGCLSQFFGEYKSFCGEHRPTQNIRRRNVGEESCILCCEDLSQISVENIQSPCCSQAIYHRKCIQKYAHTSAKHFFKCPQCNNREEFPQEMLRMGIHIPDRDAAWELEPGAFSELYQRYQHCDAPICLYERGRDSSEEEGKWRLILCATCGSHGTHRNCSSLRSNCKKWECMECAPAAKVIEYTLENSGDIPCCSSTFLSRGHFYRDTGLEENPGPSWTNWPGSSLLENPESSGPRRSQSWGSKGVTISKSCKKSE", "length": 383 }, "evidence": [ { "id": "F1SIW4", "url": "https://omabrowser.org/oma/group/F1SIW4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AXW4-1", "protein_name": "E3 ubiquitin-protein ligase PHF7", "gene_name": "PHD finger protein 7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRTIKEKKEHPRLRKTARTKKVTHRKLSSGPVCLLCFQEPGDPEKLGEFLQKDNLCVHYFCLILSSKLPQKGQPNRGLHGFMPEDIKKEAARASRKVCFVCKRKGAAIRCQKDQCVQNFHLPCGQERGCLSQFFGEYKSYCGKHRPTQNIHQRSFGESCVLCCEDLSRASVENIRSPCCSQAIYHRKCIQKYAHTSAKHFFKCPQCNNREEFPQEMLRMGIHIPDRDAAWELEPGAFSELYQRYQHCDAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRPNSKKWECNECLPASTEDSVSENLGDTPCCSSTFCPHEPFLRATSLEENPGSSWTNWLQPSLLEKPESSSGSSCQSWRSKGIKVTKDCKKSK", "length": 380 }, "evidence": [ { "id": "F1SIW4", "url": "https://omabrowser.org/oma/group/F1SIW4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BWX1-1", "protein_name": "E3 ubiquitin-protein ligase PHF7", "gene_name": "PHF7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKTVKEKKECQRLRKSAKTRRVTQRKPSSGPVCWLCLREPGDPEKLGEFLQKDNISVHYFCLILSSKLPQRGQSNRGFHGFLPEDIKKEAARASRKICFVCKKKGAAINCQKDQCLRNFHLPCGQERGCLSQFFGEYKSFCDKHRPTQNIQHGHVGEESCILCCEDLSQQSVENIQSPCCSQAIYHRKCIQKYAHTSAKHFFKCPQCNNRKEFPQEMLRMGIHIPDRDAAWELEPGAFSDLYQRYQHCDAPICLYEQGRDSFEDEGRWCLILCATCGSHGTHRDCSSLRSNSKKWECEECSPAAATDYIPENSGDIPCCSSTFHPEEHFCRDNTLEENPGLSWTDWPEPSLLEKPESSRGRRSYSWRSKGVRITNSCKKSK", "length": 381 }, "evidence": [ { "id": "F1SIW4", "url": "https://omabrowser.org/oma/group/F1SIW4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DAG9-1", "protein_name": "E3 ubiquitin-protein ligase PHF7", "gene_name": "Phf7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLKEKNKHPRLRKTIRTKKVTQRKLSSSPVCLLCLQEPGDPEKLGEFLQKDNLCVHYFCLILSSRLPQKGQPNRGLHGFMPEDIKREAVRASKKICFVCKKKGAAIRCQNDQCVQNFHLPCGQERGCLSQFFGEYKSYCRKHRPTQNIHQGSLGEESCVLCCENLSRTSVENIQSPCCSQAIYHRKCIQKYAHTSAKHFFKCPQCNNREEFPQEMLRMGIHIPDRDAAWELEPGAFSELYQRYRHCDAPICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRPNSKKWECNECLPASTTS", "length": 307 }, "evidence": [ { "id": "F1SIW4", "url": "https://omabrowser.org/oma/group/F1SIW4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIW4", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SIW4", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SIW4", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" } ], "pmid": "" }, { "name": "transferase activity", "id": "GO:0016740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016740", "evidence": [ { "database": "UniProtKB", "id": "F1SIW4", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" } ], "pmid": "" }, { "name": "histone H3K14 ubiquitin ligase activity", "id": "GO:0140851", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140851", "evidence": [ { "database": "UniProtKB", "id": "F1SIW4", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of osteoclast proliferation", "id": "GO:0090291", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090291", "evidence": [ { "database": "UniProtKB", "id": "F1SIW4", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" }, { "id": "PS51805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 146, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW4" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 161, "end_pos": 209, "start_aa": "Cys", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 55, "end_pos": 57 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLY4-1", "uniprot_ac": "F1SLY4", "uniprot_id": "F1SLY4_PIG", "mass": { "chemical_mass": 61906.0, "monoisotopic_mass": 61906.0 }, "refseq": { "ac": "XP_003134774", "name": "leiomodin-2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134774" }, "gene_names": [ { "name": "LMOD2", "type": "recommended", "evidence": [ { "id": "F1SLY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ] }, { "name": "LMOD2", "type": "synonym", "evidence": [ { "id": "XP_003134774", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134774" } ] } ], "protein_names": [ { "name": "Leiomodin-2", "type": "recommended", "evidence": [ { "id": "F1SLY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLY4/entry#names_and_taxonomy" } ] }, { "name": "Cardiac leiomodin", "type": "synonym", "evidence": [ { "id": "F1SLY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLY4/entry#names_and_taxonomy" } ] }, { "name": "Leiomodin", "type": "synonym", "evidence": [ { "id": "F1SLY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLY4/entry#names_and_taxonomy" } ] }, { "name": "leiomodin-2", "type": "synonym", "evidence": [ { "id": "XP_003134774", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134774" } ] } ], "function": [ { "annotation": "Mediates nucleation of actin filaments and thereby promotes actin polymerization. Plays a role in the regulation of actin filament length. Required for normal sarcomere organization in the heart, and for normal heart function.", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4#function" }, { "database": "UniProtKB", "id": "ARBA00056797", "url": "https://www.uniprot.org/uniprotkb/ARBA00056797#function" }, { "database": "UniProtKB", "id": "A0A8W4FLT3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLT3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LMOD2", "url": "https://www.uniprot.org/uniprotkb/F1SLY4", "locus": { "chromosome": "18", "start_pos": 23803682, "end_pos": 23812479, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016605", "url": "https://www.ensembl.org/id/ENSSSCG00000016605" } ] } } ], "crossref": [ { "id": "F1SLY4", "url": "https://alphafold.ebi.ac.uk/entry/F1SLY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016605", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016605", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525195", "url": "https://www.ncbi.nlm.nih.gov/gene/100525195", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004934", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004934", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525195", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525195", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EECFTES", "url": "https://omabrowser.org/oma/group/EECFTES/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLY4", "url": "https://www.orthodb.org/?gene=F1SLY4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10901", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10901", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10901:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10901:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03250", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03250", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27087", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27087", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134774", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134774", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1W249", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W249", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W249-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W249-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLT3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLY4-1", "url": "https://www.uniprot.org/uniprotkb/F1SLY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTFGYRRGLSKYESIDEDELLASLSAEELKELERELEDIEPDRSLPVGMRQKSLTEKTPTGTFSREALMAYWEKESQKLLEKERLGECGKVAEDDKEESEEELIFTESNSEVSEEVYTEEEEEEEEEDEDEDSEEEERTVENEKGINGAVHYGSVNSDNARPKTFTSQIENIQLTNGHTPRNTESPAAATHPCGNPTVIEDVLEKIKNNDPDTTEVNLNNIENITSQTLARFAQALKDNTVVKTFSLANTRADDSAATAIAEMLRVNQHITNVNIESNFITGKGILAIMRALQHNTVLTELRFHNQRHIMGSQVEMELVKLLRENTTLLRLGYHFELPGPRMSMTSLLTRNMDKQRQKRMQEQKQQEGSEGGATLRTKVWQRGTPGSSPYASPRHSPWSSPKVPKKVQTGRSRPMSPAAPPPPPPPPPPPPPPPLPPQRLPPPPPPPPPPPPEKKLITRNIAEVIKQQESAQRALQNGQKKKKGKKAKKQPNNILKEIKNSLRSVQEKKTEDSSRPSTPQRSAHENLMEAIRGSSIRQLRRVEVPEALR", "length": 550, "header": "tr|F1SLY4-1|F1SLY4_PIG Isoform 1 of Leiomodin-2 OS=Sus scrofa OX=9823 GN=LMOD2 PE=3 SV=1 CANONICAL=F1SLY4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W249-1", "url": "https://www.uniprot.org/uniprotkb/F1SLY4/entry#A0A4X1W249-1", "sequence": { "sequence": "MSTFGYRRGLSKYESIDEDELLASLSAEELKELERELEDIEPDRSLPVGMRQKSLTEKTPTGTFSREALMAYWEKESQKLLEKERLGECGKAKKQPNNILKEIKNSLRSVQEKKTEDSSRPSTPQRSAHENLMEAIRGSSIRQLRRVSNRAEAGQALQ", "length": 158, "header": "tr|A0A4X1W249-1|F1SLY4_PIG Computationally mapped isoform of Leiomodin-2 OS=Sus scrofa OX=9823 GN=LMOD2 PE=3 SV=1 CANONICAL=F1SLY4-1" }, "locus": { "chromosome": "18", "start_pos": 23812324, "end_pos": 23804994, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091124.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091124.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069649.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069649.1" } ] } }, { "isoform_ac": "A0A8W4FLT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SLY4/entry#A0A8W4FLT3-1", "sequence": { "sequence": "MSTFGYRRGLSKYESIDEDELLASLSAEELKELERELEDIEPDRSLPVGMRQKSLTEKTPTGTFSREALMAYWEKESQKLLEKERLGECGKVAEDDKEESEEELIFTEMIEDVLEKIKNNDPDTTEVNLNNIENITSQTLARFAQALKDNTVVKTFSLANTRADDSAATAIAEMLRVNQHITNVNIESNFITGKGILAIMRALQHNTVLTELRFHNQRHIMGSQVEMELVKLLRENTTLLRLGYHFELPGPRMSMTSLLTRNMDKQRQKRMQEQKQQEGSEGGATLRTKVWQRGTPGSSPYASPRHSPWSSPKVPKKVQTGRSRPMSPAAPPPPPPPPPPPPPPPLPPQRLPPPPPPPPPPPPEKKLITRNIAEVIKQQESAQRALQNGQKKKKGKKAKKQPNNILKEIKNSLRSVQEKKTEDSSRPSTPQRSAHENLMEAIRGSSIRQLRRVEVPEALR", "length": 460, "header": "tr|A0A8W4FLT3-1|F1SLY4_PIG Computationally mapped isoform of Leiomodin-2 OS=Sus scrofa OX=9823 GN=LMOD2 PE=3 SV=1 CANONICAL=F1SLY4-1" }, "locus": { "chromosome": "18", "start_pos": 23812324, "end_pos": 23804374, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100434.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100434.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080172.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080172.1" } ] } }, { "isoform_ac": "F1SLY4-1", "url": "https://www.uniprot.org/uniprotkb/F1SLY4/entry#F1SLY4-1", "sequence": { "sequence": "MSTFGYRRGLSKYESIDEDELLASLSAEELKELERELEDIEPDRSLPVGMRQKSLTEKTPTGTFSREALMAYWEKESQKLLEKERLGECGKVAEDDKEESEEELIFTESNSEVSEEVYTEEEEEEEEEDEDEDSEEEERTVENEKGINGAVHYGSVNSDNARPKTFTSQIENIQLTNGHTPRNTESPAAATHPCGNPTVIEDVLEKIKNNDPDTTEVNLNNIENITSQTLARFAQALKDNTVVKTFSLANTRADDSAATAIAEMLRVNQHITNVNIESNFITGKGILAIMRALQHNTVLTELRFHNQRHIMGSQVEMELVKLLRENTTLLRLGYHFELPGPRMSMTSLLTRNMDKQRQKRMQEQKQQEGSEGGATLRTKVWQRGTPGSSPYASPRHSPWSSPKVPKKVQTGRSRPMSPAAPPPPPPPPPPPPPPPLPPQRLPPPPPPPPPPPPEKKLITRNIAEVIKQQESAQRALQNGQKKKKGKKAKKQPNNILKEIKNSLRSVQEKKTEDSSRPSTPQRSAHENLMEAIRGSSIRQLRRVEVPEALR", "length": 550, "header": "tr|F1SLY4-1|F1SLY4_PIG Isoform 1 of Leiomodin-2 OS=Sus scrofa OX=9823 GN=LMOD2 PE=3 SV=1 CANONICAL=F1SLY4-1" }, "locus": { "chromosome": "18", "start_pos": 23812324, "end_pos": 23804374, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018078.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018078.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017589.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017589.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W249", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W249" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525195", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525195", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X363-1", "protein_name": "Leiomodin-2", "gene_name": "LMOD2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSTFGYRRELSKYEDIDEDELLASLTEEELKELERELEDIEPDRNLPVGQRQKSLTEKTPTGTFSREALMAYWERETRKLLEKERLGACEKDSEQEEDNSEDIQEECFTESNSEVSEEAYTEEDDEEEEEEEEEEEDEDDSDDEDEEKQNSAASERPVNCEDGRSSSHVRHKKCSNAKNSENLFNGHDGKDTENLSFKSSAIHPCGNPTVIEDALEKVRSNDPETTEVNLNNIENITSQMLIQFSQALRDNTVVKSFSLANTHADDNVAIAIAGMLKVNQHITSLNIESNFITGKGVLAIMRALQHNKVLTELRFHNQRHIMGSQVEMDIVKLLKENTTLVKLGYHFDLAGPRMSMTSILTRNMDKQRQKRMQEQRQQEYGCDGAINPKTKVLQKGTPRSSPYTSPKSSPWSSPKLPRKSAPAKSQPPAPAPPPPPPPPPPPPPPPPPVIPDKKAPTRNIAEVIKQQESSRKALQNGQKKKKGKKGKKHENSILKEIKDSLKSVSDRKSEEGSRPSTRPSTPQRSLHDNLMEAIRASSIKQLRRVSRRSYFSNWLWIRYRTSSINFRT", "length": 568 }, "evidence": [ { "id": "F1SLY4", "url": "https://omabrowser.org/oma/group/F1SLY4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3UHZ5-1", "protein_name": "Leiomodin-2", "gene_name": "Lmod2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTFGYRRGLSKYESIDEDELLASLSPEELKELERELEDIEPDRNLPVGLRQKSLTEKTPTGNFSREALMAYWEKESQKLLEKERLGECGKVAEEDKEESEEELIFTESNSEVSEEVCTEDEEESQEEEEDSEEEEDSEEEEETTEATKHINGTVSYNSVNTDNSKPKTFKSQIENINLTNGNSGRTQRNSESPAAIHPCGNPTVIEDALEKIRNNDPDTTEVNLNNIENITTQTLSRFAEALKENTVVKTFSLANTHADDAAAIAIADMLKVNEHITSVNVESNFITGKGILAIMRALQHNTVLTELRFHNQRHIMGSQVEMEIVKLLKENTTLLRLGYHFELPGPRMSMTSILTRNMDKQRQKRMQEQKQQEGHDGGAALRTKVWQRGTPGSSPYASPRQSPWSSPKVSKKVHTGRSRPPSPVAPPPPPPPPPLPPHMLPPPPPPPAPPLPEKKLITRNIAEVIKQQESAQRALQNGQRKKKGKKVKKQPNNILKEIKNSLRSVQEKKMEDSSRPSTPQRSVHENLMEAIRGSSIRQLRRVEVPEALR", "length": 550 }, "evidence": [ { "id": "F1SLY4", "url": "https://omabrowser.org/oma/group/F1SLY4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6P5Q4-1", "protein_name": "Leiomodin-2", "gene_name": "LMOD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSTFGYRRGLSKYESIDEDELLASLSAEELKELERELEDIEPDRNLPVGLRQKSLTEKTPTGTFSREALMAYWEKESQKLLEKERLGECGKVAEDKEESEEELIFTESNSEVSEEVYTEEEEEESQEEEEEEDSDEEERTIETAKGINGTVNYDSVNSDNSKPKIFKSQIENINLTNGSNGRNTESPAAIHPCGNPTVIEDALDKIKSNDPDTTEVNLNNIENITTQTLTRFAEALKDNTVVKTFSLANTHADDSAAMAIAEMLKVNEHITNVNVESNFITGKGILAIMRALQHNTVLTELRFHNQRHIMGSQVEMEIVKLLKENTTLLRLGYHFELPGPRMSMTSILTRNMDKQRQKRLQEQKQQEGYDGGPNLRTKVWQRGTPSSSPYVSPRHSPWSSPKLPKKVQTVRSRPLSPVATPPPPPPPPPPPPPSSQRLPPPPPPPPPPLPEKKLITRNIAEVIKQQESAQRALQNGQKKKKGKKVKKQPNSILKEIKNSLRSVQEKKMEDSSRPSTPQRSAHENLMEAIRGSSIKQLKRVEVPEALR", "length": 547 }, "evidence": [ { "id": "F1SLY4", "url": "https://omabrowser.org/oma/group/F1SLY4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "M band", "id": "GO:0031430", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031430", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "actin filament", "id": "GO:0005884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005884", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "striated muscle thin filament", "id": "GO:0005865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005865", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "myofibril", "id": "GO:0030016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030016", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "tropomyosin binding", "id": "GO:0005523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005523", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "actin monomer binding", "id": "GO:0003785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003785", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "pointed-end actin filament capping", "id": "GO:0051694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051694", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "sarcomere organization", "id": "GO:0045214", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045214", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "muscle contraction", "id": "GO:0006936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006936", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "actin filament polymerization", "id": "GO:0030041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030041", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "actin nucleation", "id": "GO:0045010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045010", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "positive regulation of actin filament polymerization", "id": "GO:0030838", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030838", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" }, { "name": "myofibril assembly", "id": "GO:0030239", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030239", "evidence": [ { "database": "UniProtKB", "id": "F1SLY4", "url": "https://www.uniprot.org/uniprotkb/F1SLY4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 326, "end_pos": 328, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLY4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 550, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLY4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLY4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 224, "end_pos": 226 }, { "start_pos": 326, "end_pos": 328 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPI9-1", "uniprot_ac": "F1SPI9", "uniprot_id": "F1SPI9_PIG", "mass": { "chemical_mass": 67533.0, "monoisotopic_mass": 67533.0 }, "refseq": {}, "gene_names": [ { "name": "PMEL", "type": "recommended", "evidence": [ { "id": "F1SPI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ] } ], "protein_names": [ { "name": "Premelanosome protein", "type": "synonym", "evidence": [ { "id": "F1SPI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PMEL", "url": "https://www.uniprot.org/uniprotkb/F1SPI9", "locus": { "chromosome": "5", "start_pos": 21355619, "end_pos": 21364987, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000371", "url": "https://www.ensembl.org/id/ENSSSCG00000000371" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000371", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000371", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00146", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00146", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000601", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000601", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035986", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RDQDWLG", "url": "https://omabrowser.org/oma/group/RDQDWLG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11861", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11861", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11861:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11861:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00801", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00801", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20433", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20433", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W9C7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W9C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9C7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WAY8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WAY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WAY8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAL1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QAL1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QAL1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPI9-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLVLRKCLLHVAVMGAFLAVGATEGPRGRDWLGVSRQLRTKAWNSQLYPEWTEIRAPDCWRGGRVSLKVSNDGPTLIGANASFSIALHFPKSQKVLPDGQVIWANNTIINGSQVWGGQPVYPQEPNATCIFPDGAACPPGPSSQRRSFVYVWKAWGQYWQVLGGPVSGLSIGTGKAVLGTHTMEVTVYHRRGSQSYVPLAHSRSAFTVTDQVPFSVSVSQLQALDRGNKRFLRKQPLTFALQLHDPSGYLAGADLSYTWDFGDNTGTLISRALVVTHTYLESGPVTAQVVLQAAIPLTSCGSSPVPGTTDGPVPTAETPGTTAKQVPTTEVVGTTPGQMPTAEPSGTTAVQVPTAEGMGTTPDQAPTSEVRGTTPAVMPTVEPSGTTVAQVTTTELVETTAGEVPTPEPESPDVSPFMPTEGLTGSQSPLLDGTATLILVKRQVPLDCVLYRYGSFSLTLDIVQGIESAEILQAVPSSEGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQPVSPSPACQLVLHQVLKGGSGTYCLNVSLADTNSLAMVSTQLVMPGQESGLGQAPLFVGILLVLIALLLASLIYRRRLMKQDSALPLPQLPHGRSPWLRLPWGFRSCPVGENSPLLSGQQV", "length": 637, "header": "tr|F1SPI9-1|F1SPI9_PIG Isoform 1 of Premelanosome protein OS=Sus scrofa OX=9823 GN=PMEL PE=1 SV=3 CANONICAL=F1SPI9-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W9C7-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI9/entry#A0A4X1W9C7-1", "sequence": { "sequence": "MDLVLRKCLLHVAVMGAFLAVGATEGGRVSLKVSNDGPTLIGANASFSIALHFPKSQKVLPDGQVIWANNTIINGSQVWGGQPVYPQEPNATCIFPDGAACPPGPSSQRRSFVYVWKAWEGIESAEILQAVPSSEGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQPVSPSPACQLVLHQVLKGGSGTYCLNVSLADTNSLAMVSTQLVMPGQESGLGQAPLFVGILLVLIALLLASLIYRRRLMKQDSALPLPQLPHGRSPWLRLPWGFRSCPVGENSPLLSGQQV", "length": 292, "header": "tr|A0A4X1W9C7-1|F1SPI9_PIG Computationally mapped isoform of Premelanosome protein OS=Sus scrofa OX=9823 GN=PMEL PE=1 SV=1 CANONICAL=F1SPI9-1" }, "locus": { "chromosome": "5", "start_pos": 21364962, "end_pos": 21355729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080617.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080617.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063257.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063257.1" } ] } }, { "isoform_ac": "A0A4X1WAY8-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI9/entry#A0A4X1WAY8-1", "sequence": { "sequence": "MDLVLRKCLLHVAVMGAFLAVGATEGSQVWGGQPVYPQEPNATCIFPDGAACPPGPSSQRRSFVYVWKAWGQYWQVLGGPVSGLSIGTGKAVLGTHTMEVTVYHRRGSQSYVPLAHSRSAFTVTDQVPFSVSVSQLQALDRGNKRFLRKQPLTFALQLHDPSGYLAGADLSYTWDFGDNTGTLISRALVVTHTYLESGPVTAQVVLQAAIPLTSCGSSPVPGTTDGPVPTAETPGTTAKQVPTTEVVGTTPGQMPTAEPSGTTAVQVPTAEGMGTTPDQAPTSEVRGTTPAVMPTVEPSGTTVAQVTTTELVETTAGEVPTPEPESPDVSPFMPTEGLTGSQSPLLDGTATLILVKRQVPLDCVLYRYGSFSLTLDIVQGIESAEILQAVPSSEGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQPVSPSPACQLVLHQVLKGGSGTYCLNVSLADTNSLAMVSTQLVMPGQESGLGQAPLFVGILLVLIALLLASLIYRRRLMKQDSALPLPQLPHGRSPWLRLPWGFRSCPVGENSPLLSGQQV", "length": 551, "header": "tr|A0A4X1WAY8-1|F1SPI9_PIG Computationally mapped isoform of Premelanosome protein OS=Sus scrofa OX=9823 GN=PMEL PE=1 SV=1 CANONICAL=F1SPI9-1" }, "locus": { "chromosome": "5", "start_pos": 21364962, "end_pos": 21355729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078236.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078236.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073568.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073568.1" } ] } }, { "isoform_ac": "A0A5G2QAL1-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI9/entry#A0A5G2QAL1-1", "sequence": { "sequence": "MDLVLRKCLLHVAVMGAFLAVGATEGEGRNGLNVKSQLMQLSFPGGRVSLKVSNDGPTLIGANASFSIALHFPKSQKVLPDGQVIWANNTIINGSQVWGGQPVYPQEPNATCIFPDGAACPPGPSSQRRSFVYVWKAWGQYWQVLGGPVSGLSIGTGKAVLGTHTMEVTVYHRRGSQSYVPLAHSRSAFTVTDQVPFSVSVSQLQALDRGNKRFLRKQPLTFALQLHDPSGYLAGADLSYTWDFGDNTGTLISRALVVTHTYLESGPVTAQVVLQAAIPLTSCGSSPVPGTTDGPVPTAETPGTTAKQVPTTEVVGTTPGQMPTAEPSGTTAVQVPTAEGMGTTPDQAPTSEVRGTTPAVMPTVEPSGTTVAQVTTTELVETTAGEVPTPEPESPDVSPFMPTEGLTGSQSPLLDGTATLILVKRQVPLDCVLYRYGSFSLTLDIVQGIESAEILQAVPSSEGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQPVSPSPACQLVLHQVLKGGSGTYCLNVSLADTNSLAMVSTQLVMPGQESGLGQAPLFVGILLVLIALLLASLIYRRRLMKQDSALPLPQLPHGRSPWLRLPWGFRSCPVGENSPLLSGQQV", "length": 619, "header": "tr|A0A5G2QAL1-1|F1SPI9_PIG Computationally mapped isoform of Premelanosome protein OS=Sus scrofa OX=9823 GN=PMEL PE=1 SV=1 CANONICAL=F1SPI9-1" }, "locus": { "chromosome": "5", "start_pos": 21364962, "end_pos": 21355729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069189.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069189.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061432.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061432.1" } ] } }, { "isoform_ac": "F1SPI9-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI9/entry#F1SPI9-1", "sequence": { "sequence": "MDLVLRKCLLHVAVMGAFLAVGATEGPRGRDWLGVSRQLRTKAWNSQLYPEWTEIRAPDCWRGGRVSLKVSNDGPTLIGANASFSIALHFPKSQKVLPDGQVIWANNTIINGSQVWGGQPVYPQEPNATCIFPDGAACPPGPSSQRRSFVYVWKAWGQYWQVLGGPVSGLSIGTGKAVLGTHTMEVTVYHRRGSQSYVPLAHSRSAFTVTDQVPFSVSVSQLQALDRGNKRFLRKQPLTFALQLHDPSGYLAGADLSYTWDFGDNTGTLISRALVVTHTYLESGPVTAQVVLQAAIPLTSCGSSPVPGTTDGPVPTAETPGTTAKQVPTTEVVGTTPGQMPTAEPSGTTAVQVPTAEGMGTTPDQAPTSEVRGTTPAVMPTVEPSGTTVAQVTTTELVETTAGEVPTPEPESPDVSPFMPTEGLTGSQSPLLDGTATLILVKRQVPLDCVLYRYGSFSLTLDIVQGIESAEILQAVPSSEGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQPVSPSPACQLVLHQVLKGGSGTYCLNVSLADTNSLAMVSTQLVMPGQESGLGQAPLFVGILLVLIALLLASLIYRRRLMKQDSALPLPQLPHGRSPWLRLPWGFRSCPVGENSPLLSGQQV", "length": 637, "header": "tr|F1SPI9-1|F1SPI9_PIG Isoform 1 of Premelanosome protein OS=Sus scrofa OX=9823 GN=PMEL PE=1 SV=3 CANONICAL=F1SPI9-1" }, "locus": { "chromosome": "5", "start_pos": 21364962, "end_pos": 21355729, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000394.3", "url": "https://www.ensembl.org/id/ENSSSCT00000000394.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000388.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000388.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 336, "start_aa": "Thr", "end_pos": 336, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr336", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 407, "start_aa": "Thr", "end_pos": 407, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr407", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W9C7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W9C7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3ZED8-1", "protein_name": "Premelanosome protein", "gene_name": "Pmel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKSVPALSFFPGFPSSGGRGGRPMQMSIPFYIGAHSHPLVPLAAERRTSMGVQRRCFLPVLVLGALLALGSIEGSRNQNWHGVSRQLVTKVWNKQLYPEWTEVQGSNCWRGGQVSLKVRNDGPTLVGANTSFSIALHFPGSQKVLPDGQVIWVNNTIINGSQVWGGQPVYPREPDDACIFPDGGPCPSGPKPPRRSFVYVWKTWGQYWQVLGGPESKLSIPTGHARLGTHTMEVTVYHRRGSQSYVPLAHSSSTFTITDQVPFSVSVSQLQALDGENKRFLRNHPLIFALQLHDPSGYLAEADLSYTWDFGDSTGTLISRAPDVTHTYLEPGSVTAHVVLQAAIPLVSCGSSPVPGTTDGYVPTAEPPGTTPRQGATTKGQMPTTEPPGTTVVPTTEVTATTSEQMLTSAVTDTTLAEMSTPESTTPARPSGTTVAQATITELVRTTAEELPTPKPEGSDASPLLPTPSSTGSVSRLLDDTDTIMLVKRQVPLDCVLYRYGSFSLTLDIVQGIESAEILQAVPSSEGDAFELTVSCRGGLPKEACMDISSPGCQPPAQRLCQPVPPSPDCQLVLHQILKGGLGTYCLNVSLADANSLAVASTQLVVPGQEGSLGQAPLLVGVLLVLVAVVLASLIYRHRLKKQDSVSQTPHGSTHWLRLPPVFCARRLGESSPLLSGQQV", "length": 680 }, "evidence": [ { "id": "F1SPI9", "url": "https://omabrowser.org/oma/group/F1SPI9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P40967-1", "protein_name": "Melanocyte protein PMEL", "gene_name": "PMEL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDLVLKRCLLHLAVIGALLAVGATKVPRNQDWLGVSRQLRTKAWNRQLYPEWTEAQRLDCWRGGQVSLKVSNDGPTLIGANASFSIALNFPGSQKVLPDGQVIWVNNTIINGSQVWGGQPVYPQETDDACIFPDGGPCPSGSWSQKRSFVYVWKTWGQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRSYVPLAHSSSAFTITDQVPFSVSVSQLRALDGGNKHFLRNQPLTFALQLHDPSGYLAEADLSYTWDFGDSSGTLISRALVVTHTYLEPGPVTAQVVLQAAIPLTSCGSSPVPGTTDGHRPTAEAPNTTAGQVPTTEVVGTTPGQAPTAEPSGTTSVQVPTTEVISTAPVQMPTAESTGMTPEKVPVSEVMGTTLAEMSTPEATGMTPAEVSIVVLSGTTAAQVTTTEWVETTARELPIPEPEGPDASSIMSTESITGSLGPLLDGTATLRLVKRQVPLDCVLYRYGSFSVTLDIVQGIESAEILQAVPSGEGDAFELTVSCQGGLPKEACMEISSPGCQPPAQRLCQPVLPSPACQLVLHQILKGGSGTYCLNVSLADTNSLAVVSTQLIMPGQEAGLGQVPLIVGILLVLMAVVLASLIYRRRLMKQDFSVPQLPHSSSHWLRLPRIFCSCPIGENSPLLSGQQV", "length": 661 }, "evidence": [ { "id": "F1SPI9", "url": "https://omabrowser.org/oma/group/F1SPI9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q60696-1", "protein_name": "Melanocyte protein PMEL", "gene_name": "Pmel", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVQRRSFLPVLVLSALLAVGALEGSRNQDWLGVPRQLVTKTWNRQLYPEWTEVQGSNCWRGGQVSLRVINDGPTLVGANASFSIALHFPGSQKVLPDGQVIWANNTIINGSQVWGGQPVYPQEPDDACVFPDGGPCPSGPKPPKRSFVYVWKTWGKYWQVLGGPVSRLSIATGHAKLGTHTMEVTVYHRRGSQSYVPLAHASSTFTITDQVPFSVSVSQLQALDGETKHFLRNHPLIFALQLHDPSGYLAEADLSYTWDFGDGTGTLISRALDVTHTYLESGSVTAQVVLQAAIPLVSCGSSPVPGTTDGYMPTAEAPGTTSRQGTTTKVVGTTPGQMPTTQPSGTTVVQMPTTEVTATTSEQMLTSAVIDTTLAEVSTTEGTGTTPTRPSGTTVAQATTTEGPDASPLLPTQSSTGSISPLLDDTDTIMLVKRQVPLDCVLYRYGSFSLALDIVQGIESAEILQAVPFSEGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQSVPPSPDCQLVLHQVLKGGSGTYCLNVSLADANSLAVASTQLVVPGQDGGLGQAPLLVGILLVLVAVVLASLIHRHRLKKQGSVSQMPHGSTHWLRLPPVFRARGLGENSPLLSGQQV", "length": 626 }, "evidence": [ { "id": "F1SPI9", "url": "https://omabrowser.org/oma/group/F1SPI9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" }, { "name": "extracellular exosome", "id": "GO:0070062", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070062", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" }, { "name": "melanosome", "id": "GO:0042470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042470", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" }, { "name": "multivesicular body membrane", "id": "GO:0032585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032585", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" }, { "name": "multivesicular body, internal vesicle", "id": "GO:0097487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097487", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" }, { "name": "melanosome membrane", "id": "GO:0033162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033162", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" }, { "name": "cis-Golgi network membrane", "id": "GO:0033106", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033106", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "melanosome organization", "id": "GO:0032438", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032438", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" }, { "name": "positive regulation of melanin biosynthetic process", "id": "GO:0048023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048023", "evidence": [ { "database": "UniProtKB", "id": "F1SPI9", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI9" }, { "id": "PS50093", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PKD", "eco_id": "ECO_0000259", "start_pos": 252, "end_pos": 292, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 336, 407 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 111, "end_pos": 113 }, { "start_pos": 127, "end_pos": 129 }, { "start_pos": 542, "end_pos": 544 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGG0-1", "uniprot_ac": "F1SGG0", "uniprot_id": "F1SGG0_PIG", "mass": { "chemical_mass": 146315.0, "monoisotopic_mass": 146315.0 }, "refseq": {}, "gene_names": [ { "name": "TNS2", "type": "recommended", "evidence": [ { "id": "F1SGG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ] } ], "protein_names": [ { "name": "Tensin 2", "type": "synonym", "evidence": [ { "id": "F1SGG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGG0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TNS2", "url": "https://www.uniprot.org/uniprotkb/F1SGG0", "locus": { "chromosome": "5", "start_pos": 18320781, "end_pos": 18300167, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000263", "url": "https://www.ensembl.org/id/ENSSSCG00000000263" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000263", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000263", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01213", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09927", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09927", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20887", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20887", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033929", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033929", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051484", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051484", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IVQREEM", "url": "https://omabrowser.org/oma/group/IVQREEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45734", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45734", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45734:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45734:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08416", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08416", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10409", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10409", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q6Z1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q6Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCD7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCD7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFS5", "url": "https://www.uniprot.org/uniprotkb/F1SFS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFS5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGG0-1", "url": "https://www.uniprot.org/uniprotkb/F1SGG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSSGPVERLLRALGRRDSSRATSRPRKAEPHSFREKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVGTWPRPLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHGDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDRLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVAAELQPSQRRYISYFSGLLSGSIRMNSSPLFLHYVLVPVLPAFEPGTGFQPFLKIYQSMQLVYTSGIYHIAGPSPQQLCISLEPALLLKGDVMVTCYHKGSRGTDRTLVFRVQFHTCTIHGPRLAFPKDQLDEAWTDERFPFQASVEFVFSSSPEKIKGSTPRNEASVSVDYNTAEPAVRWDSYENFNLHHEDSVDDSLTHTRGPLDGSPYAQVQRGLRQTPPAPSPEPPAPPLLSVSSDSGHSSTLTTEPARQELDRLLGGCGVASGGRGAGRETAILDDEEQPPVGGGPPLGLYSGHRPGLSRHCSCRQGYREPCGVPNGGYYRPEGTLERRRLAYGGYEGPPQGYAEASVEKRRLCRSLSEGPYPYPPELGKPASGDFGYRPPGYREVVILEDPGLPALCSCPACEEKLALPTAALYGLRLEREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPLPDYSCLKPPKAGEEGHEGCSYAMCPEGRYGHPGYPALVTYSYGGAVPSYCPAYGRVPHGEGRGYPSSGAHSPRAGSVSPGSPPYPQSRKLSYEIPAEEGGDRYPLPGHLAPAGPLASAESPEPVSWREGPSGHSTLPRSPRDAQGSASSELSGPSTPLHTSSPVQGKESSRRQDTRSPMLAPTQRLSPGEALPPVLQGGAEKASELPARSGPEPAAPGPFSPASPPGSPDWPQERSPGGRSESASPRGPVPTTLPGLRHAPWQGLRDPPDSPDGSPLTPVPTQMPWLVANPEPPQSSPTPAFPLATSYDVSGPTQPPLPEKRHLLGAGQQSGPWARSTSHHVTFAPLLPDTQSPPVLEPPMQESQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPSEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPLSLPCCLRIPSKDPLEEAPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAIVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPADAIVTFITKVLLGQRK", "length": 1350, "header": "tr|F1SGG0-1|F1SGG0_PIG Isoform 1 of Tensin 2 OS=Sus scrofa OX=9823 GN=TNS2 PE=1 SV=3 CANONICAL=F1SGG0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q6Z1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGG0/entry#A0A5G2Q6Z1-1", "sequence": { "sequence": "MGGLAFSHPPASPKRSFGRGKLCCSPPSCSNLPVGQYTLCPQPGDPPLEAALPLPPTLPGSQSPNPPLKFPGPLPARTVHTLNAFLLESPTPRICAHKVTGMGSPPTRKEEVEPSMPRWAPLCIVKPRKAEPHSFREKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSSCQALPPAELRRNTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHGDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDRLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVAAELQPSQRRYISYFSGLLSGSIRMNSSPLFLHYVLVPVLPAFEPGTGFQPFLKIYQSMQLVYTSGIYHIAGPSPQQLCISLEPALLLKGDVMVTCYHKGSRGTDRTLVFRVQFHTCTIHGPRLAFPKDQLDEAWTDERFPFQASVEFVFSSSPEKIKGSTPRNEASVSVDYNTAEPAVRWDSYENFNLHHEDSVDGVWGAPRAGQGWGLWGHTPSSQAQPPPQRPPPQLPRAGWSLQCWPLTNTHTPAFSLSLSLPVLPACPPTLILLSTPRLPHPHPGTPGWQSLCAGAARSPPDPAGALSGTACPAAALRQQRLWPLIHADHRAGGRVPRPAPPTAAERQELDRLLGGCGVASGGRGAGRETAILDDEEQPPVGGGPPLGLYSGHRPGLSRHCSCRQGYREPCGVPNGGYYRPEGTLERRRLAYGGYEGPPQGYAEASVEKRRLCRSLSEGPYPYPPELGKPASGDFGYRPPGYREVVILEDPGLPALCSCPACEEKLALPTAALYGLRLEREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPLPDYSCLKPPKAGEEGHEGCSYAMCPEGRYGHPGYPALVTYSYGGAVPSYCPAYGRVPHGEGRGYPSSGAHSPRAGSVSPGSPPYPQSRKLSYEIPAEEGGDRYPLPGHLAPAGPLASAGEGTGVGSAQGRGGFWKMVGKAQSEKELSQTEGVFLAHSPSSHLPCRVARTSVVAGGPQWAQYPASVSPRCPGQCLL", "length": 1121, "header": "tr|A0A5G2Q6Z1-1|F1SGG0_PIG Computationally mapped isoform of Tensin 2 OS=Sus scrofa OX=9823 GN=TNS2 PE=1 SV=1 CANONICAL=F1SGG0-1" }, "locus": { "chromosome": "5", "start_pos": 18316969, "end_pos": 18300167, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083292.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083292.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059803.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059803.1" } ] } }, { "isoform_ac": "A0A8W4FCD7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGG0/entry#A0A8W4FCD7-1", "sequence": { "sequence": "EGRMGGETGCLPRGPRKAEPHSFREKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVGTWPRPLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHGDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDRLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVAAELQPSQRRYISYFSGLLSGSIRMNSSPLFLHYVLVPVLPAFEPGTGFQPFLKIYQSMQLVYTSGIYHIAGPSPQQLCISLEPALLLKGDVMVTCYHKGSRGTDRTLVFRVQFHTCTIHGPRLAFPKDQLDEAWTDERFPFQASVEFVFSSSPEKIKGSTPRNEASVSVDYNTAEPAVRWDSYENFNLHHEDSVDGVWGAPRAGQGWGLWGHTPSSQAQPPPQRPPPQLPRAGWSLQCWPLTNTHTPAFSLSLSLPVLPACPPTLILLSTPRLPHPHPGTPGWQSLCAGAARSPPDPAGALSGTACPAAALRQQRLWPLIHADHRAGGRVPRPAPPTAAERQELDRLLGGCGVASGGRGAGRETAILDDEEQPPVGGGPPLGLYSGHRPGLSRHCSCRQGYREPCGVPNGGYYRPEGTLERRRLAYGGYEGPPQGYAEASVEKRRLCRSLSEGPYPYPPELGKPASGDFGYRPPGYREVVILEDPGLPALCSCPACEEKLALPTAALYGLRLEREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPLPDYSCLKPPKAGEEGHEGCSYAMCPEGRYGHPGYPALVTYSYGGAVPSYCPAYGRVPHGEGRGYPSSGAHSPRAGSVSPGSPPYPQSRKLSYEIPAEEGGDRYPLPGHLAPAGPLASAGEGTGVGSAQGRGGFWKMVGKAQSEKELSQTEGVFLAHSPSSHLPCRVARTSVVAGGPQWAQYPASVSPRCPGQCLL", "length": 976, "header": "tr|A0A8W4FCD7-1|F1SGG0_PIG Computationally mapped isoform of Tensin 2 OS=Sus scrofa OX=9823 GN=TNS2 PE=1 SV=1 CANONICAL=F1SGG0-1" }, "locus": { "chromosome": "5", "start_pos": 18316969, "end_pos": 18307763, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102742.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102742.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075963.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075963.1" } ] } }, { "isoform_ac": "F1SFS5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGG0/entry#F1SFS5-1", "sequence": { "sequence": "MGWPGGSPCCCPAPPRPRPAGRPPQPRKAEPHSFREKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSSCQALPPAELRRNTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHGDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDRLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVAAELQPSQRRYISYFSGLLSGSIRMNSSPLFLHYVLVPVLPAFEPGTGFQPFLKIYQSMQLVYTSGIYHIAGPSPQQLCISLEPALLLKGDVMVTCYHKGSRGTDRTLVFRVQFHTCTIHGPRLAFPKDQLDEAWTDERFPFQASVEFVFSSSPEKIKGSTPRNEASVSVDYNTAEPAVRWDSYENFNLHHEDSVDGVWGAPRAGQGWGLWGHTPSSQAQPPPQRPPPQLPRAGWSLQCWPLTNTHTPAFSLSLSLPVLPACPPTLILLSTPRLPHPHPGTPGWQSLCAGAARSPPDPAGALSGTACPAAALRQQRLWPLIHADHRAGGRVPRPAPPTAAERQELDRLLGGCGVASGGRGAGRETAILDDEEQPPVGGGPPLGLYSGHRPGLSRHCSCRQGYREPCGVPNGGYYRPEGTLERRRLAYGGYEGPPQGYAEASVEKRRLCRSLSEGPYPYPPELGKPASGDFGYRPPGYREVVILEDPGLPALCSCPACEEKLALPTAALYGLRLEREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPLPDYSCLKPPKAGEEGHEGCSYAMCPEGRYGHPGYPALVTYSYGGAVPSYCPAYGRVPHGEGRGYPSSGAHSPRAGSVSPGSPPYPQSRKLSYEIPAEEGGDRYPLPGHLAPAGPLASAGEGTGVGSAQGRGGFWKMVGKAQSEKELSQTEGVFLAHSPSSHLPCRVARTSVVAGGPQWAQYPASVSPRCPGQCLL", "length": 1020, "header": "tr|F1SFS5-1|F1SGG0_PIG Computationally mapped isoform of Tensin 2 OS=Sus scrofa OX=9823 GN=TNS2 PE=1 SV=4 CANONICAL=F1SGG0-1" }, "locus": { "chromosome": "5", "start_pos": 18316969, "end_pos": 18303435, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000282.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000282.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000278.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000278.4" } ] } }, { "isoform_ac": "F1SGG0-1", "url": "https://www.uniprot.org/uniprotkb/F1SGG0/entry#F1SGG0-1", "sequence": { "sequence": "MKSSGPVERLLRALGRRDSSRATSRPRKAEPHSFREKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVGTWPRPLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHGDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDRLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVAAELQPSQRRYISYFSGLLSGSIRMNSSPLFLHYVLVPVLPAFEPGTGFQPFLKIYQSMQLVYTSGIYHIAGPSPQQLCISLEPALLLKGDVMVTCYHKGSRGTDRTLVFRVQFHTCTIHGPRLAFPKDQLDEAWTDERFPFQASVEFVFSSSPEKIKGSTPRNEASVSVDYNTAEPAVRWDSYENFNLHHEDSVDDSLTHTRGPLDGSPYAQVQRGLRQTPPAPSPEPPAPPLLSVSSDSGHSSTLTTEPARQELDRLLGGCGVASGGRGAGRETAILDDEEQPPVGGGPPLGLYSGHRPGLSRHCSCRQGYREPCGVPNGGYYRPEGTLERRRLAYGGYEGPPQGYAEASVEKRRLCRSLSEGPYPYPPELGKPASGDFGYRPPGYREVVILEDPGLPALCSCPACEEKLALPTAALYGLRLEREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPLPDYSCLKPPKAGEEGHEGCSYAMCPEGRYGHPGYPALVTYSYGGAVPSYCPAYGRVPHGEGRGYPSSGAHSPRAGSVSPGSPPYPQSRKLSYEIPAEEGGDRYPLPGHLAPAGPLASAESPEPVSWREGPSGHSTLPRSPRDAQGSASSELSGPSTPLHTSSPVQGKESSRRQDTRSPMLAPTQRLSPGEALPPVLQGGAEKASELPARSGPEPAAPGPFSPASPPGSPDWPQERSPGGRSESASPRGPVPTTLPGLRHAPWQGLRDPPDSPDGSPLTPVPTQMPWLVANPEPPQSSPTPAFPLATSYDVSGPTQPPLPEKRHLLGAGQQSGPWARSTSHHVTFAPLLPDTQSPPVLEPPMQESQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPSEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPLSLPCCLRIPSKDPLEEAPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAIVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPADAIVTFITKVLLGQRK", "length": 1350, "header": "tr|F1SGG0-1|F1SGG0_PIG Isoform 1 of Tensin 2 OS=Sus scrofa OX=9823 GN=TNS2 PE=1 SV=3 CANONICAL=F1SGG0-1" }, "locus": { "chromosome": "5", "start_pos": 18320267, "end_pos": 18306453, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000273.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000273.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000269.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000269.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1002, "start_aa": "Thr", "end_pos": 1002, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1002", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1017, "start_aa": "Thr", "end_pos": 1017, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1017", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1251, "start_aa": "Thr", "end_pos": 1251, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1251", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q6Z1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q6Z1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AQ81-1", "protein_name": "Tensin 2", "gene_name": "Tns2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLALSSARRSASEVGATPYPILLLLVPRAQCSSSQESPTLSRSTSKNPVHPSVMGMRSQAVEEGVPPSVPRWTSFCIVKPRKAEPHSFREKVFRKKAPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSSCQALPPAELRRNTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVHDFGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKAAMELQPSQHRYVGYFSGLLSGSIRMNSSPLFLHYVFVPVLPAFEPNTGFQPFLKIYQSMQLVYTSGVYHITGPGPRQICISLEPALLLKGDVMVTCYHKGGQGTDRTLVFRVQFHTCTIHGPRLNFPKDQLDEAWADERFPFQASVEFVFSSSPEKVKGNTPRNDPSVSVDYNMTEPAVRWDSYENFNQHHEDSVDGSLAHTRGPLDGSPYAQVQRVPRQTPPAPSPELPPPPMLSVSSDSGHSSTLTTEHTAESPGRPPPTAAERQELDRLLGGCGVASAGRGAGRETAILDDEEQPSVGGGLHLGMYPGHRPGLSRRCSCRQGLREPCGVPNGGYYRPEGTLERRRPPYGGYEGHPQGYTEASVEKRRLCRSLSEGPYPYAPELGKPANGDFGYRPAGYREVVILEDPGVPALCSCPACEEKMALPTAALYGLRLEREAGEGWSSEVGKPLLHPVRPGHPLPLLVPACGHHHAPVPDYGCLKSPKVGEEGHEGCSYAVCPEGRYGHPGYPALVTYGYGGAVPSYCPAYGRAPHSCGSPSEGRGYPSPGAHSPQAGSVSPGSPPYLQSRKLGYEAPAEDGRDKYSLPGPLASAGPLASTESPEPSWRDGSSGHSTLPRSPRDAQCSASSELSGPSTPLHTSSPVQGKESTRRQDTTRSPSLAPTQRLSPGEALPSVVQGVTEKTPELLASSRPEPLDPSPFSQTSTPSSPNGWPQERSPGGHTNSASPRSPVPTTLPGLRHAPWQGPQGPSDSPDGSPLTPVPTQMPWLVGSPEPPQSSPTPAFPLATSYETNGPTQPPLPEKRHLPGSGQQSSPPARGTNQHVTFASPLPDVTQPPEHPLQENQSSVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPSEQLVRHFLIETGPKGVKIKGCPTEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETSEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPVPVPAIVHFKVSAQGITLTDNQRKVFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPASAIVTFITKVLLGQRK", "length": 1454 }, "evidence": [ { "id": "F1SGG0", "url": "https://omabrowser.org/oma/group/F1SGG0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63HR2-1", "protein_name": "Tensin-2", "gene_name": "TNS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKSSGPVERLLRALGRRDSSRAASRPRKAEPHSFREKVFRKKPPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSACQALPPVELRRNTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGNKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQRRYISYFSGLLSGSIRMNSSPLFLHYVLIPMLPAFEPGTGFQPFLKIYQSMQLVYTSGVYHIAGPGPQQLCISLEPALLLKGDVMVTCYHKGGRGTDRTLVFRVQFHTCTIHGPQLTFPKDQLDEAWTDERFPFQASVEFVFSSSPEKIKGSTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGSLTHTRGPLDGSPYAQVQRPPRQTPPAPSPEPPPPPMLSVSSDSGHSSTLTTEPAAESPGRPPPTAAERQELDRLLGGCGVASGGRGAGRETAILDDEEQPTVGGGPHLGVYPGHRPGLSRHCSCRQGYREPCGVPNGGYYRPEGTLERRRLAYGGYEGSPQGYAEASMEKRRLCRSLSEGLYPYPPEMGKPATGDFGYRAPGYREVVILEDPGLPALYPCPACEEKLALPTAALYGLRLEREAGEGWASEAGKPLLHPVRPGHPLPLLLPACGHHHAPMPDYSCLKPPKAGEEGHEGCSYTMCPEGRYGHPGYPALVTYSYGGAVPSYCPAYGRVPHSCGSPGEGRGYPSPGAHSPRAGSISPGSPPYPQSRKLSYEIPTEEGGDRYPLPGHLASAGPLASAESLEPVSWREGPSGHSTLPRSPRDAPCSASSELSGPSTPLHTSSPVQGKESTRRQDTRSPTSAPTQRLSPGEALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHSDGASPRSPVPTTLPGLRHAPWQGPRGPPDSPDGSPLTPVPSQMPWLVASPEPPQSSPTPAFPLAASYDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQASSPARGISHHVTFAPLLSDNVPQTPEPPTQESQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPVEQLVRHFLIETGPKGVKIKGCPSEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPRPTPAVVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPAGAIVTFITKVLLGQRK", "length": 1409 }, "evidence": [ { "id": "F1SGG0", "url": "https://omabrowser.org/oma/group/F1SGG0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CGB6-1", "protein_name": "Tensin-2", "gene_name": "Tns2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSGPVERLLRALGRRDSSRATSRPRKAEPHSFREKVFRKKTPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSSCQALPPAELRRSTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQRRYVSYFSGLLSGSIRMNSSPLFLHYVFVPVLPAFEPNTGFQPFLKIYQSMQLVYTSGVYRIAGPGPQQLCISLEPALLLKGDVMVTCYHKGGQGTDRTLVFRVQFHTCTIHGSRLTFPKDQLDEAWADERFPFQASVEFVFSSSPEKVKGNTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGALAHTRGPLDGSPYAQVQRVPRQTPPAPSPELPPPPMLSVSSDSGHSSTLTTEHTAESPGRPPPTAAERQELDRLLGGCGVASAGRGAGRETAILDDEEQPSVGGGLHLGMYSGHRPGLSRRCSCRQGFREPCGVPNGSYYRPEGTLERRRPPYGGYEGHPQGYAEASVEKRRLCRSLSEGPYPYAPELGKPANGDFGYRPAGYREVVILEDPGVPALCSCPACEEKLALPTAALYGLRLEREAAEGWSSEVGKPLLHPVRPGHPLPLLVPACGHHHAPMPDYGCLKPPKVGEEGHEGCSYAVCSEGRYGHSGYPALVTYGYGGAVPSYCPAYGRAPHSCGSPSEGRGYPSPGAHSPRAGSVSPGSPPYLQPRKLGYEISAEDGRDKYPLSGHLASTGPLASTESPEPSWRDGSSGHSTLPRSPRDPQCSASSELSGPSTPLHTSSPVQGKESNRRQDTTRSPSLAPTQRLSPGEALPSVVQGVAEKTPELLTSSRPEQLDPSPFSQTSAPGSPNGWPQERSPGGHTNSASPRSPVPTTLPGLRHAPWQGPRGTSDSPDGSPLTPVPTQMPWLVGSPEPPQSSPTPAFPLATSYDANGPIQPPLPEKRHLPGSGQQPSPPARSTNQHVTFASPLPDVTQPPEHPLQENQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPWKGDPSEQLVRHFLIETGPKGVKIKGCPTEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVAKASSAALSCSPVPVPAIVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGATSKIFGFVAKKPGSPWENVCHLFAELDPDQPASAIVTFITKVLLGQRK", "length": 1400 }, "evidence": [ { "id": "F1SGG0", "url": "https://omabrowser.org/oma/group/F1SGG0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ], "pmid": "" }, { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ], "pmid": "" }, { "name": "kinase binding", "id": "GO:0019900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019900", "evidence": [ { "database": "UniProtKB", "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ], "pmid": "" }, { "name": "protein tyrosine phosphatase activity", "id": "GO:0004725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004725", "evidence": [ { "database": "UniProtKB", "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of insulin receptor signaling pathway", "id": "GO:0046627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046627", "evidence": [ { "database": "UniProtKB", "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ], "pmid": "" }, { "name": "negative regulation of cell population proliferation", "id": "GO:0008285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008285", "evidence": [ { "database": "UniProtKB", "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "F1SGG0", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1203, "end_pos": 1205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 144, "end_pos": 146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" }, { "id": "PS51182", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51182" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 tensin-type", "eco_id": "ECO_0000259", "start_pos": 266, "end_pos": 392, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" }, { "id": "PS50081", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50081" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phorbol-ester/DAG-type", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 79, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" }, { "id": "PS51181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphatase tensin-type", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 261, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGG0" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 1081, "end_pos": 1188, "start_aa": "Trp", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1002, 1017, 1251 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1203, "end_pos": 1205 }, { "start_pos": 144, "end_pos": 146 }, { "start_pos": 265, "end_pos": 267 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLS0-1", "uniprot_ac": "F1SLS0", "uniprot_id": "F1SLS0_PIG", "mass": { "chemical_mass": 113063.0, "monoisotopic_mass": 113063.0 }, "refseq": {}, "gene_names": [ { "name": "MORC1", "type": "recommended", "evidence": [ { "id": "F1SLS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLS0" } ] } ], "protein_names": [ { "name": "MORC family CW-type zinc finger protein 1", "type": "recommended", "evidence": [ { "id": "F1SLS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLS0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLS0", "url": "https://www.uniprot.org/uniprotkb/F1SLS0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MORC1", "url": "https://www.uniprot.org/uniprotkb/F1SLS0", "locus": { "chromosome": "13", "start_pos": 150560867, "end_pos": 150268234, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011937", "url": "https://www.ensembl.org/id/ENSSSCG00000011937" } ] } } ], "crossref": [ { "id": "F1SLS0", "url": "https://alphafold.ebi.ac.uk/entry/F1SLS0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011937", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011937", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16931", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16931", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR011124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23337", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23337", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23337:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23337:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07496", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07496", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13589", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13589", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17942", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17942", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8G9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8G9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLS0", "url": "https://www.uniprot.org/uniprotkb/F1SLS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLS0-1", "url": "https://www.uniprot.org/uniprotkb/F1SLS0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDKYAALRRAQLHLDFIHANSTTHSFLFGALAELLDNARDAGATRLDVFSVDNEKLQGGFMLCFLDDGCGMSPEEASDIIYFGTSKKRLSALKFIGQYGNGLKSGSMRIGKDFILFTKKEETMTCVFFSQTFCEREGLSEVVVPIPSWLTKTRESVTDNLQKFSTELSIIYKYSPFKTEAELMQQFDVIYGKCGTLLVIYNLKLLLSGEPELDVKTDKEDILMAGALEDFPERWSFRAYTSVLYFDPWMRIFIQAKKVKTKYLCYCLYRPRKYLYVTSSFKETFKNEVKKAEEAVKIAEFILKEAQIKVNYTDGTSLSSPTKDVLQKALEDVKAKHKILQEKRRELKKARTLSLFFGVNIENRSQAGMFIYSNNRLIKMHEKVGPQLKLKSLLGAGVVGIVNIPLEIMEPSHNKQEFLNVKEYNHLLKVMGQYLVQYCKDTGISNRNLTLFWNEFGYQNNKDTERSLDSVQYQRRQAMAIPFIIQCDLCLKWRILPPSTDYEEKECFDIWICANNPNLLENSCHQTEHLPSIPLGTMSTVSPSKNEKEKQLQESVQRYQNRLAEQHRQPQFIPTSRITEFTTTCQTSAPKENTKTQRIRPSGNDLKHESLLSFELSDNPRGGKRSTEGSDSDIEYVSETKITKKSMQKKVKPQQWRHPAALLENVKLAKRPQKSQIANISTESILKIWASSWEMKRKKSQNLMQECKTLTEVKTVNSDLNIIQVLDKSDTDVSLKQENKEASLMKKEKQELCCDILEIKRNSSSPNWESLFSPSMPVEDLNPSSGNKARVSVSGGCKVASSLTESSQRASVKETVRKLTSNLREILLYFFPEYQVPSELGHTSLEELIGNSELEQCPEKTNKKLKMCFNQIQDVYMAQYEKKLKRKMQSIIYDANRRGVVNEVSLVQCEEKRKTTEDKLNNLRIKLAVLLKKLQLGGPAGDLEQIDSYLEVLLKEDNLFQKSLNRETTDIGHNLPLQKRENMPQN", "length": 986, "header": "tr|F1SLS0-1|F1SLS0_PIG Isoform 1 of MORC family CW-type zinc finger protein 1 OS=Sus scrofa OX=9823 GN=MORC1 PE=4 SV=4 CANONICAL=F1SLS0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8G9-1", "url": "https://www.uniprot.org/uniprotkb/F1SLS0/entry#A0A5G2Q8G9-1", "sequence": { "sequence": "MGDKYAALRRAQLHLDFIHANSTTHSFLFGALAELLDNARDAGATRLDVFSVDNEKLQGGFMLCFLDDGCGMSPEEASDIIYFGTSKKRLSALKFIGQYGNGLKSGSMRIGKDFILFTKKEETMTCVFFSQTFCEREGLSEVVVPIPSWLTKTRESVTDNLQKFSTELSIIYKYSPFKTEAELMQQFDVIYGKCGTLLVIYNLKLLLSGEPELDVKTDKEDILMAGALEDFPERWSFRAYTSVLYFDPWMRIFIQAKKVKTKYLCYCLYRPRKYLYVTSSFKETFKNEVKKAEEAVKIAEFILKEAQIKVNYTDGTSLSSPTKDVLQKALEDVKAKHKILQEKRRELKKARTLSLFFGVNIENRSQAGMFIYSNNRLIKMHEKVGPQLKLKSLLGAGVVGIVNIPLEIMEPSHNKQEFLNVKEYNHLLKVMGQYLVQYCKDTGISNRNLTLFWNEFGYQNNKDTERSLDSVQYQRRQAMAIPFIIQCDLCLKWRILPPSTDYEEKECFDIWICANNPNLLENSCHQTEHLPSIPLGTMSTVSPSKNEKEKQLQESVQRYQNRLAEQHRQENTKTQRIRPSGNDLKHESLLSFELSDNPRGGKRSTEGSDSDIEYVSETKITKKSMQKKVKPQQWRHPAALLENVKLAKRPQKSQIANISTESILKIWASSWEMKRKKSQNLMQECKTLTEVKTVNSDLNIIQVLDKSDTDVSLKQENKEASLMKKEKQELCCDILEIKRNSSSPNWESLFSPSMPVEDLNPSSGNKARVSVSGGCKVASSLTESSQRASVKETVRKLTSNLREILLYFFPEYQVPSELGHTSLEELIGNSELEQCPEKTNKKLKMCFNQIQDVYMAQYEKKLKRKMQSIIYDANRRGVVNEVSLVQCEEKRKTTEDKLNNLRIKLAVLLKKLQLGGPAGDLEQIDSYLEVLLKEDNLFQKSLNRETTDIGHNLPLQKRENMPQN", "length": 964, "header": "tr|A0A5G2Q8G9-1|F1SLS0_PIG Computationally mapped isoform of MORC family CW-type zinc finger protein 1 OS=Sus scrofa OX=9823 GN=MORC1 PE=4 SV=1 CANONICAL=F1SLS0-1" }, "locus": { "chromosome": "13", "start_pos": 150560864, "end_pos": 150388004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082514.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082514.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060176.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060176.1" } ] } }, { "isoform_ac": "F1SLS0-1", "url": "https://www.uniprot.org/uniprotkb/F1SLS0/entry#F1SLS0-1", "sequence": { "sequence": "MGDKYAALRRAQLHLDFIHANSTTHSFLFGALAELLDNARDAGATRLDVFSVDNEKLQGGFMLCFLDDGCGMSPEEASDIIYFGTSKKRLSALKFIGQYGNGLKSGSMRIGKDFILFTKKEETMTCVFFSQTFCEREGLSEVVVPIPSWLTKTRESVTDNLQKFSTELSIIYKYSPFKTEAELMQQFDVIYGKCGTLLVIYNLKLLLSGEPELDVKTDKEDILMAGALEDFPERWSFRAYTSVLYFDPWMRIFIQAKKVKTKYLCYCLYRPRKYLYVTSSFKETFKNEVKKAEEAVKIAEFILKEAQIKVNYTDGTSLSSPTKDVLQKALEDVKAKHKILQEKRRELKKARTLSLFFGVNIENRSQAGMFIYSNNRLIKMHEKVGPQLKLKSLLGAGVVGIVNIPLEIMEPSHNKQEFLNVKEYNHLLKVMGQYLVQYCKDTGISNRNLTLFWNEFGYQNNKDTERSLDSVQYQRRQAMAIPFIIQCDLCLKWRILPPSTDYEEKECFDIWICANNPNLLENSCHQTEHLPSIPLGTMSTVSPSKNEKEKQLQESVQRYQNRLAEQHRQPQFIPTSRITEFTTTCQTSAPKENTKTQRIRPSGNDLKHESLLSFELSDNPRGGKRSTEGSDSDIEYVSETKITKKSMQKKVKPQQWRHPAALLENVKLAKRPQKSQIANISTESILKIWASSWEMKRKKSQNLMQECKTLTEVKTVNSDLNIIQVLDKSDTDVSLKQENKEASLMKKEKQELCCDILEIKRNSSSPNWESLFSPSMPVEDLNPSSGNKARVSVSGGCKVASSLTESSQRASVKETVRKLTSNLREILLYFFPEYQVPSELGHTSLEELIGNSELEQCPEKTNKKLKMCFNQIQDVYMAQYEKKLKRKMQSIIYDANRRGVVNEVSLVQCEEKRKTTEDKLNNLRIKLAVLLKKLQLGGPAGDLEQIDSYLEVLLKEDNLFQKSLNRETTDIGHNLPLQKRENMPQN", "length": 986, "header": "tr|F1SLS0-1|F1SLS0_PIG Isoform 1 of MORC family CW-type zinc finger protein 1 OS=Sus scrofa OX=9823 GN=MORC1 PE=4 SV=4 CANONICAL=F1SLS0-1" }, "locus": { "chromosome": "13", "start_pos": 150560864, "end_pos": 150388004, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013062.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013062.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012718.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012718.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8G9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8G9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SLS0", "url": "https://www.uniprot.org/uniprotkb/F1SLS0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SLS0", "url": "https://www.uniprot.org/uniprotkb/F1SLS0" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SLS0", "url": "https://www.uniprot.org/uniprotkb/F1SLS0" } ], "pmid": "" }, { "name": "regulatory ncRNA-mediated gene silencing", "id": "GO:0031047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031047", "evidence": [ { "database": "UniProtKB", "id": "F1SLS0", "url": "https://www.uniprot.org/uniprotkb/F1SLS0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SLS0", "url": "https://www.uniprot.org/uniprotkb/F1SLS0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" }, { "start_pos": 679, "end_pos": 681, "annotation": "n_glycosylation_sequon" }, { "start_pos": 762, "end_pos": 764, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLS0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 986, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLS0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLS0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLS0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLS0" }, { "id": "PS51050", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51050" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CW-type", "eco_id": "ECO_0000259", "start_pos": 478, "end_pos": 532, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 21, "end_pos": 23 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 363, "end_pos": 365 }, { "start_pos": 448, "end_pos": 450 }, { "start_pos": 679, "end_pos": 681 }, { "start_pos": 762, "end_pos": 764 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFL9-1", "uniprot_ac": "F1SFL9", "uniprot_id": "F1SFL9_PIG", "mass": { "chemical_mass": 47605.0, "monoisotopic_mass": 47605.0 }, "refseq": {}, "gene_names": [ { "name": "IL5RA", "type": "recommended", "evidence": [ { "id": "F1SFL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ] } ], "protein_names": [ { "name": "Interleukin-5 receptor subunit alpha", "type": "recommended", "evidence": [ { "id": "F1SFL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Cell surface receptor that plays an important role in the survival, differentiation, and chemotaxis of eosinophils. Acts by forming a heterodimeric receptor with CSF2RB subunit and subsequently binding to interleukin-5. In unstimulated conditions, interacts constitutively with JAK2. Heterodimeric receptor activation leads to JAK2 stimulation and subsequent activation of the JAK-STAT pathway.", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9#function" }, { "database": "UniProtKB", "id": "ARBA00057788", "url": "https://www.uniprot.org/uniprotkb/ARBA00057788#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IL5RA", "url": "https://www.uniprot.org/uniprotkb/F1SFL9", "locus": { "chromosome": "13", "start_pos": 59652271, "end_pos": 59690176, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011528", "url": "https://www.ensembl.org/id/ENSSSCG00000011528" } ] } } ], "crossref": [ { "id": "F1SFL9", "url": "https://alphafold.ebi.ac.uk/entry/F1SFL9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011528", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011528", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003532", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003532", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015321", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015321", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23037", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23037", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23037:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23037:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-512988", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-512988", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-912526", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-912526", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QCD8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFL9-1", "url": "https://www.uniprot.org/uniprotkb/F1SFL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VSSMAPALLILLGATVILQTDSLPNKNAVLLPPVSFTIKVIDLAQVLLHWEPNPDQEQRNVQLGYHVKINAPEEKDYETRNTESRRVTILHKGFSASVRTILWNNHSFPASSWVSAELKVPPGSPGTSIVNLTCTTNTEAYNYTHERPYQVSLHCTWLVGKDAPEDTQYFLYYRYGSVTEECREYSKDTQQRNIACRFPRTVINSKGRDWLAVYVNGSSKEEAIKPFDQLFALHAIDRVNSPVNVTAEIEGTCLSIQWEKPVSAFPIHCFDYEVKICNTRKGYFQTEKMKTNTFISIIDDISKYSVQVRAAVSSVCRPVGLWSEWSQPIYVGNDKQKPWMEWLLIVLTAAACFILLIVSLICRICHLWTKLFPPVPAPKTNIKDFFVSINHEKTGSSETEVEVISYVEEAGLETLEDSVF", "length": 420, "header": "tr|F1SFL9-1|F1SFL9_PIG Isoform 1 of Interleukin-5 receptor subunit alpha OS=Sus scrofa OX=9823 GN=IL5RA PE=4 SV=4 CANONICAL=F1SFL9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCD8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFL9/entry#A0A5G2QCD8-1", "sequence": { "sequence": "VSSMAPALLILLGATVILQTDSLPNKNAVLLPPVSFTIKVIDLAQVLLHWEPNPDQEQRNVQLGYHVKINAPEEKDYETRNTESRRVTILHKGFSASVRTILWNNHSFPASSWVSAELKVPPGSPGTSIVNLTCTTNTEAYNYTHERPYQVSLHCTWLVGKDAPEDTQYFLYYRYGSVTEECREYSKDTQQRNIACRFPRTVINSKGRDWLAVYVNGSSKEEAIKPFDQLFALHAIGNDKQKPWMEWLLIVLTAAACFILLIVSLICRICHLWTKLFPPVPAPKTNIKDFFVSINHEKTGSSETEVEVISYVEEAGLETLEDSVF", "length": 325, "header": "tr|A0A5G2QCD8-1|F1SFL9_PIG Computationally mapped isoform of Interleukin-5 receptor subunit alpha OS=Sus scrofa OX=9823 GN=IL5RA PE=4 SV=1 CANONICAL=F1SFL9-1" }, "locus": { "chromosome": "13", "start_pos": 59684758, "end_pos": 59652758, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079386.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079386.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061209.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061209.1" } ] } }, { "isoform_ac": "F1SFL9-1", "url": "https://www.uniprot.org/uniprotkb/F1SFL9/entry#F1SFL9-1", "sequence": { "sequence": "VSSMAPALLILLGATVILQTDSLPNKNAVLLPPVSFTIKVIDLAQVLLHWEPNPDQEQRNVQLGYHVKINAPEEKDYETRNTESRRVTILHKGFSASVRTILWNNHSFPASSWVSAELKVPPGSPGTSIVNLTCTTNTEAYNYTHERPYQVSLHCTWLVGKDAPEDTQYFLYYRYGSVTEECREYSKDTQQRNIACRFPRTVINSKGRDWLAVYVNGSSKEEAIKPFDQLFALHAIDRVNSPVNVTAEIEGTCLSIQWEKPVSAFPIHCFDYEVKICNTRKGYFQTEKMKTNTFISIIDDISKYSVQVRAAVSSVCRPVGLWSEWSQPIYVGNDKQKPWMEWLLIVLTAAACFILLIVSLICRICHLWTKLFPPVPAPKTNIKDFFVSINHEKTGSSETEVEVISYVEEAGLETLEDSVF", "length": 420, "header": "tr|F1SFL9-1|F1SFL9_PIG Isoform 1 of Interleukin-5 receptor subunit alpha OS=Sus scrofa OX=9823 GN=IL5RA PE=4 SV=4 CANONICAL=F1SFL9-1" }, "locus": { "chromosome": "13", "start_pos": 59684758, "end_pos": 59652758, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012617.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012617.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012287.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012287.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCD8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCD8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-512988", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-512988", "resource": "Reactome", "description": "Interleukin-3, Interleukin-5 and GM-CSF signaling" }, { "id": "R-SSC-5673001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "resource": "Reactome", "description": "RAF/MAP kinase cascade" }, { "id": "R-SSC-912526", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-912526", "resource": "Reactome", "description": "Interleukin receptor SHC signaling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "pmid": "" }, { "name": "receptor complex", "id": "GO:0043235", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043235", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "cytokine receptor activity", "id": "GO:0004896", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004896", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "pmid": "" }, { "name": "interleukin-5 receptor activity", "id": "GO:0004914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004914", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "pmid": "" }, { "name": "cytokine binding", "id": "GO:0019955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019955", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "pmid": "" }, { "name": "cytokine-mediated signaling pathway", "id": "GO:0019221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019221", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "pmid": "" }, { "name": "cell surface receptor signaling pathway via JAK-STAT", "id": "GO:0007259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007259", "evidence": [ { "database": "UniProtKB", "id": "F1SFL9", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFL9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 420, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFL9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFL9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL9" }, { "id": "PF09240", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Type I cytokine receptor cytokine-binding", "eco_id": "ECO_0000259", "start_pos": 131, "end_pos": 236, "start_aa": "Asn", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 }, { "start_pos": 131, "end_pos": 133 }, { "start_pos": 142, "end_pos": 144 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 244, "end_pos": 246 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ89-1", "uniprot_ac": "F1SQ89", "uniprot_id": "F1SQ89_PIG", "mass": { "chemical_mass": 134938.0, "monoisotopic_mass": 134938.0 }, "refseq": { "ac": "XP_020925016", "name": "cullin-associated NEDD8-dissociated protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925016" }, "gene_names": [ { "name": "CAND2", "type": "recommended", "evidence": [ { "id": "F1SQ89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ89" } ] }, { "name": "CAND2", "type": "synonym", "evidence": [ { "id": "XP_020925016", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925016" } ] } ], "protein_names": [ { "name": "Cullin associated and neddylation dissociated 2 (putative)", "type": "synonym", "evidence": [ { "id": "F1SQ89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ89/entry#names_and_taxonomy" } ] }, { "name": "cullin-associated NEDD8-dissociated protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020925016", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925016" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ89", "url": "https://www.uniprot.org/uniprotkb/F1SQ89" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAND2", "url": "https://www.uniprot.org/uniprotkb/F1SQ89", "locus": { "chromosome": "13", "start_pos": 68787192, "end_pos": 68758734, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011582", "url": "https://www.ensembl.org/id/ENSSSCG00000011582" } ] } } ], "crossref": [ { "id": "F1SQ89", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ89", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011582", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011582", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525717", "url": "https://www.ncbi.nlm.nih.gov/gene/100525717", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039852", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039852", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WKLRMWA", "url": "https://omabrowser.org/oma/group/WKLRMWA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQ89", "url": "https://www.orthodb.org/?gene=F1SQ89", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12696", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12696", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08623", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08623", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13513", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13513", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020925016", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925016", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QG48", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QG48-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG48-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ89", "url": "https://www.uniprot.org/uniprotkb/F1SQ89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ89-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTAAFHISSLLEKMTSSDKDFRFMATSDLMSELQKDSIQLDEDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVGKVKEYQVETIVDALCANMRSDKEQLRDIAGIGLKTVLSELPPAATGSGLATNVCRKITGQLTSAIAQQEDVAVQLEALDILSDMLSRLGAPLGAFHASLLHCLLPQLSSPRLAVRKRAVGALGHLAAACSTDLFTELADHLLDRLPGPRAPTSPAALRTVIQCLGSVGRQAGHRLGAHLDRLVPLVEEFCNLDDDELRESCLQAFEAFLRKCPKEMGPHVPNVTSLCLQYIKHDPNYNYDSDEDEEQMETEDSEFSEQESEDEYSDDDDMSWKVRRAAAKCLAALIGSRPDLLHDFHCTLAPVLIRRFKEREENVKADVFGAYIVLLRQTRPPKGWLEGVEEPTQTGSNLHILRGQVPLVIKALQRQLKDRSIRARQGCFSLLTELAGVLPGSLAEHMPVLVAGIVFSLADRSSSSTIRMDALAFLQGLLGTEPAEAFHTHLPTLLPPVMACVADPFYKIAAEALLVLQELVKALWPLDRPRTLDPEPYIGEMSAATLARLRATDLDQEVKERAISCMGHLVGHLGDRLGDDLEPSLLLLLDRLRNEITRLSAVKALTLVAVSPLRIDLQLILAEALPILASFLRKNQRALRLATLAALDALARSQGLSLPPPAVRTVLAELPALVSESDMHVAQLAVDFLATVTHAQPASLAEVSGPVLSELLRLLRSPLLPAGVLAAAEGFLQALVGTRPPCVNYAELISLLTAPVYNQPVDSGPGLHKQVFHSLARCVAALAAACPQEAAGTAKRLVCDARSPSSSTGVKVLAFLSLAEVGQVAGPGPQRELKAVLLEALGSPSEDVRAAASYALGRVGAGNLPDFLPFLLGQIEAEPRRQYLLLHSLREALGAAPPDSLKPYAEDIWALLFQRCEGAEEGTRGVVAECIGKLVLVNPPFLLPRFRKQLAAGQPHTRSTVITAVKFLISDQPHPIDPLLKSFIGEFMESLQDPDLNVRRATLAFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFLNHLEDGLKDHYDIRMLTFIMLARLATLCPVPVLQRVDRLIEPLRATCTAKVKAGSVKQEFEKQDELKRSAMRAVAALLTIPEVGKSPIMADFSSQIRSNPELTTLFESIQKDSASAPSTDSMELS", "length": 1236, "header": "tr|F1SQ89-1|F1SQ89_PIG Isoform 1 of Cullin associated and neddylation dissociated 2 (putative) OS=Sus scrofa OX=9823 GN=CAND2 PE=1 SV=1 CANONICAL=F1SQ89-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QG48-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ89/entry#A0A5G2QG48-1", "sequence": { "sequence": "MSTAAFHISSLLEKMTSSDKDFRFMATSDLMSELQKDSIQLDEDSERKVVKMLLRLLEDKNGEVQNLAVKWLGAPLGAFHASLLHCLLPQLSSPRLAVRKRAVGALGHLAAACSTDLFTELADHLLDRLPGPRAPTSPAALRTVIQCLGSVGRQAGHRLGAHLDRLVPLVEEFCNLDDDELRESCLQAFEAFLRKCPKEMGPHVPNVTSLCLQYIKHDPNYNYDSDEDEEQMETEDSEFSEQESEDEYSDDDDMSWKVRRAAAKCLAALIGSRPDLLHDFHCTLAPVLIRRFKEREENVKADVFGAYIVLLRQTRPPKGWLEGVEEPTQTGSNLHILRGQVPLVIKALQRQLKDRSIRARQGCFSLLTELAGVLPGSLAEHMPVLVAGIVFSLADRSSSSTIRMDALAFLQGLLGTEPAEAFHTHLPTLLPPVMACVADPFYKIAAEALLVLQELVKALWPLDRPRTLDPEPYIGEMSAATLARLRATDLDQEVKERAISCMGHLVGHLGDRLGDDLEPSLLLLLDRLRNEITRLSAVKALTLVAVSPLRIDLQLILAEALPILASFLRKNQRALRLATLAALDALARSQGLSLPPPAVRTVLAELPALVSESDMHVAQLAVDFLATVTHAQPASLAEVSGPVLSELLRLLRSPLLPAGVLAAAEGFLQALVGTRPPCVNYAELISLLTAPVYNQPVDSGPGLHKQVFHSLARCVAALAAACPQEAAGTAKRLVCDARSPSSSTGVKVLAFLSLAEVGQVAGPGPQRELKAVLLEALGSPSEDVRAAASYALGRVGAGNLPDFLPFLLGQIEAEPRRQYLLLHSLREALGAAPPDSLKPYAEDIWALLFQRCEGAEEGTRGVVAECIGKLVLVNPPFLLPRFRKQLAAGQPHTRSTVITAVKFLISDQPHPIDPLLKSFIGEHTSPLPPPPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFLNHLEDGLKDHYDIRMLTFIMLARLATLCPVPVLQRVDRLIEPLRATCTAKVKAGSVKQEFEKQDELKRSAMRAVAALLTIPEVGKSPIMADFSSQIRSNPELTTLFESIQKDSASAPSTDSMELS", "length": 1124, "header": "tr|A0A5G2QG48-1|F1SQ89_PIG Computationally mapped isoform of Cullin associated and neddylation dissociated 2 (putative) OS=Sus scrofa OX=9823 GN=CAND2 PE=1 SV=2 CANONICAL=F1SQ89-1" }, "locus": { "chromosome": "13", "start_pos": 68786396, "end_pos": 68758834, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090284.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090284.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063722.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063722.2" } ] } }, { "isoform_ac": "A0A5G2QRG1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ89/entry#A0A5G2QRG1-1", "sequence": { "sequence": "MSTAAFHISSLLEKMTSSDKDFRFMATSDLMSELQKDSIQLDEDSERKVVKMLLRLLEDKNGEVQNLAVKCSSSLSVYQGPWVCHKGEEARSWWEGRCLAQVAHWVSPA", "length": 109, "header": "tr|A0A5G2QRG1-1|F1SQ89_PIG Computationally mapped isoform of Cullin associated and neddylation dissociated 2 (putative) OS=Sus scrofa OX=9823 GN=CAND2 PE=1 SV=1 CANONICAL=F1SQ89-1" }, "locus": { "chromosome": "13", "start_pos": 68770064, "end_pos": 68758834, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090453.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090453.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067508.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067508.1" } ] } }, { "isoform_ac": "F1SQ89-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ89/entry#F1SQ89-1", "sequence": { "sequence": "MSTAAFHISSLLEKMTSSDKDFRFMATSDLMSELQKDSIQLDEDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVGKVKEYQVETIVDALCANMRSDKEQLRDIAGIGLKTVLSELPPAATGSGLATNVCRKITGQLTSAIAQQEDVAVQLEALDILSDMLSRLGAPLGAFHASLLHCLLPQLSSPRLAVRKRAVGALGHLAAACSTDLFTELADHLLDRLPGPRAPTSPAALRTVIQCLGSVGRQAGHRLGAHLDRLVPLVEEFCNLDDDELRESCLQAFEAFLRKCPKEMGPHVPNVTSLCLQYIKHDPNYNYDSDEDEEQMETEDSEFSEQESEDEYSDDDDMSWKVRRAAAKCLAALIGSRPDLLHDFHCTLAPVLIRRFKEREENVKADVFGAYIVLLRQTRPPKGWLEGVEEPTQTGSNLHILRGQVPLVIKALQRQLKDRSIRARQGCFSLLTELAGVLPGSLAEHMPVLVAGIVFSLADRSSSSTIRMDALAFLQGLLGTEPAEAFHTHLPTLLPPVMACVADPFYKIAAEALLVLQELVKALWPLDRPRTLDPEPYIGEMSAATLARLRATDLDQEVKERAISCMGHLVGHLGDRLGDDLEPSLLLLLDRLRNEITRLSAVKALTLVAVSPLRIDLQLILAEALPILASFLRKNQRALRLATLAALDALARSQGLSLPPPAVRTVLAELPALVSESDMHVAQLAVDFLATVTHAQPASLAEVSGPVLSELLRLLRSPLLPAGVLAAAEGFLQALVGTRPPCVNYAELISLLTAPVYNQPVDSGPGLHKQVFHSLARCVAALAAACPQEAAGTAKRLVCDARSPSSSTGVKVLAFLSLAEVGQVAGPGPQRELKAVLLEALGSPSEDVRAAASYALGRVGAGNLPDFLPFLLGQIEAEPRRQYLLLHSLREALGAAPPDSLKPYAEDIWALLFQRCEGAEEGTRGVVAECIGKLVLVNPPFLLPRFRKQLAAGQPHTRSTVITAVKFLISDQPHPIDPLLKSFIGEFMESLQDPDLNVRRATLAFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFLNHLEDGLKDHYDIRMLTFIMLARLATLCPVPVLQRVDRLIEPLRATCTAKVKAGSVKQEFEKQDELKRSAMRAVAALLTIPEVGKSPIMADFSSQIRSNPELTTLFESIQKDSASAPSTDSMELS", "length": 1236, "header": "tr|F1SQ89-1|F1SQ89_PIG Isoform 1 of Cullin associated and neddylation dissociated 2 (putative) OS=Sus scrofa OX=9823 GN=CAND2 PE=1 SV=1 CANONICAL=F1SQ89-1" }, "locus": { "chromosome": "13", "start_pos": 68786396, "end_pos": 68758834, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012675.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012675.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012342.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012342.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QG48", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QG48" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1BNE2-1", "protein_name": "Cullin associated and neddylation dissociated 2 (putative)", "gene_name": "CAND2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSTAAFHISSLLEKMTSSDKDFRFMATSDLMSELQKDSIQLDEDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVGKVKEYQVETIVDVLCANMRSDKEQLRDIAGIGLKTVLSELPTAATGSSLASNVCRKITGQLTSAIAQQEDVAVQLEALDILSDMLSRLGAPLGAFHASLLHCLLPQLSSPRLAVRKRAVGALGHLAAACSTDLFVELADHLLDQLPGPRAPASPTAIRTLIQCLGSIGRQAGHRLGAHLDRLVPLVEEFCNLDDDELRESCLQAFEAFLRKCPKEMGPHVPNVTSLCLQYVKHDPNYNYDSDEDEEQMETEDSEFSEQESEEEYSDDDDMSWKVRRAAAKCLAALIDSRPDLLPDFHCALAPALIQRFKEREENVKADVFGAYIVLLRQTRPPKGWLEVMEEPTQTSSNLQMLRGQVPLVMKALQRQLKDRSARARQGCFSLLTELAGVLPGSLAEHMPVLVAGIVFSLADRSSSSTIRMDALAFLQGLLGTEPAEAFQPHLPTLLPPVMACVADPFYKIAAEALLVLQELVRALWPLDGPRKLDPEPYVGEMSAATLARLRATDLDQEVKERAISCMGHLVGHLGDRLGGDLEPSLSLLLDRLRNEITRLSAVKALTLVAMSPLKISLQPILAEALPILASFLRKNQRALRLTTLAALAALAQSQGPGLPPSAVRAVLAELPALVSESDMHVAQLAVDFLATVTRAQPASMAEVSGPVLAELLRLLRSPLLPAGVLAATEGFLQALVGTRPPCVDYAKLIGLLTAPVYEQAAEGGPGLHKQVFHSLARCVAALAAACPQEAAGTANRLVGEARSPSSSPGVKVLAFLSLAEVGQVAGPGPQRELKAVLLEALGSPSEDVRAAASYALGRVGAGNLPDFLPFLLGQMEAEPRRQYLLLHSLREALGAAQPDSLKPYAEDIWALLFQRCEGAEEGTRGVVAECIGKLVLVNPPFLLPRFRKQLAAGRPHTRCTVITAVKYLISDQPHPIDPLLKTFIGEFMESLQDPDLNVRRATLAFFNSAVHNKPSLVRDLLDDILPFLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDVCEFLNHVEDGLKDHYDIRMLTFIMLARLATLCPVPVLQRVDRLIEPLRATCTAKVKAGSVKQEFEKQDELKRSAMRAVAALLTIPEVGKSPIMADFSSQIRSNPELAALFESIQKDSVSAPSTDSMELS", "length": 1236 }, "evidence": [ { "id": "F1SQ89", "url": "https://omabrowser.org/oma/group/F1SQ89/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O75155-1", "protein_name": "Cullin-associated NEDD8-dissociated protein 2", "gene_name": "CAND2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSTAAFHISSLLEKMTSSDKDFRFMATSDLMSELQKDSIQLDEDSERKVVKMLLRLLEDKNGEVQNLAVKCLGPLVVKVKEYQVETIVDTLCTNMRSDKEQLRDIAGIGLKTVLSELPPAATGSGLATNVCRKITGQLTSAIAQQEDVAVQLEALDILSDMLSRLGVPLGAFHASLLHCLLPQLSSPRLAVRKRAVGALGHLAAACSTDLFVELADHLLDRLPGPRVPTSPTAIRTLIQCLGSVGRQAGHRLGAHLDRLVPLVEDFCNLDDDELRESCLQAFEAFLRKCPKEMGPHVPNVTSLCLQYIKHDPNYNYDSDEDEEQMETEDSEFSEQESEDEYSDDDDMSWKVRRAAAKCIAALISSRPDLLPDFHCTLAPVLIRRFKEREENVKADVFTAYIVLLRQTQPPKGWLEAMEEPTQTGSNLHMLRGQVPLVVKALQRQLKDRSVRARQGCFSLLTELAGVLPGSLAEHMPVLVSGIIFSLADRSSSSTIRMDALAFLQGLLGTEPAEAFHPHLPILLPPVMACVADSFYKIAAEALVVLQELVRALWPLHRPRMLDPEPYVGEMSAVTLARLRATDLDQEVKERAISCMGHLVGHLGDRLGDDLEPTLLLLLDRLRNEITRLPAIKALTLVAVSPLQLDLQPILAEALHILASFLRKNQRALRLATLAALDALAQSQGLSLPPSAVQAVLAELPALVNESDMHVAQLAVDFLATVTQAQPASLVEVSGPVLSELLRLLRSPLLPAGVLAAAEGFLQALVGTRPPCVDYAKLISLLTAPVYEQAVDGGPGLHKQVFHSLARCVAALSAACPQEAASTASRLVCDARSPHSSTGVKVLAFLSLAEVGQVAGPGHQRELKAVLLEALGSPSEDVRAAASYALGRVGAGSLPDFLPFLLEQIEAEPRRQYLLLHSLREALGAAQPDSLKPYAEDIWALLFQRCEGAEEGTRGVVAECIGKLVLVNPSFLLPRLRKQLAAGRPHTRSTVITAVKFLISDQPHPIDPLLKSFIGEFMESLQDPDLNVRRATLAFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFLNHVEDGLKDHYDIRMLTFIMVARLATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQEFEKQDELKRSAMRAVAALLTIPEVGKSPIMADFSSQIRSNPELAALFESIQKDSASAPSTDSMELS", "length": 1236 }, "evidence": [ { "id": "F1SQ89", "url": "https://omabrowser.org/oma/group/F1SQ89/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6ZQ73-1", "protein_name": "Cullin-associated NEDD8-dissociated protein 2", "gene_name": "Cand2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTGAFYISSLLEKMTSSDKDFRFMATSDLMSELQKDSIQLDEDSERKVVRTLLRLLEDRSGEVQNLAVKCLGPLVGKVKEYQVENIVDTLCANMRSDKEQLRDIAGIGLKTVLSELPPAATGSGLAINVCRKITGQLTSAIAQQEDVAVQLEALDILSDMLSRLGAPLGTFHASLLHCLLPQLSSPRLAVRKRTVVALGHLAAACSTDLFVELADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLVPMVEEFCNLDDDELRESCLQAFEAFLRKCPKEMDPHVPNVTSLCLQYMKHDPNYDHDSDDEEQMETEDSEFSEQESEDEYSDDDDMSWKVRRAAAKCMAALISSRPDLLPDFHCTLAPALIRRFKEREENVKADIFGAYIMLLRHTRPPKGWLEAVEEPTQTGRNLNMLRAQVPLVIKALQRQLKDRNVRTRQGCFNLFTELAGVLPGSLAEHMAVLVSGIVFSLADYSSSSTIRMDALAFLQGLLGTEPAEAFHPHLPTLLPPVMACVADPFYKVAAEALLVLQELVRTLWPLDRPRLLDPEPYVGEMSTATLARLRATDLDQEVKERAISCVGHLVGHLGDRLGDDLEPTLMLLLDRLRNEITRLPAVKALTLVAMSPLRLDLQPILAEALPILASFLRKNQRALRLATLAALDALAQSQGLGLPPPAVRTVLTELPALVSENDMHVAQLAVDFLTTVTQTQPSSLVEVSGPVLGELLQLLHSPLLPAGVLAATEGFLQALVGTRPPCVEYSELISLLTAPVYNQVGDGGPGLHKQVFHSLARCVAALSAACPQEAAGTASRLVCDAKSPHSSTGVKVLAFLSLAEVGQVAGPGPQRELKTVLLEALGSPSEDVRAAAAYALGRVGAGNLPDFLPFLLAQIEAQPRRQYLLLHALREALGAAQPDNLKPYVEDVWALLFQRCESPEEGTRCVVAECIGKLVFVNPPYLLPRFRKQLAAGQPYTRSTVITAVKFLISDQPHSIDPLLKSFIAEFMESLQDPDLNVRRATLTFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDMCEFLNHVEDGLKDHYDIRMLTFIMLARLATLCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQEELKRSAMRAVAALLTNPEVRKSPTVADFSAQIRSNPELTTLFESIQKDTASGPSTDSMELS", "length": 1235 }, "evidence": [ { "id": "F1SQ89", "url": "https://omabrowser.org/oma/group/F1SQ89/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9R0L4-1", "protein_name": "Cullin-associated NEDD8-dissociated protein 2", "gene_name": "Cand2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSTGAFYISSLLEKMTSSDKDFSPKSLGGSRVLDPLPWLQILAAITDWISGDRTQDLALPRFMATSDLMSELQKDSIQLDEDSERKVVRTLLRLLEDRSGEVQNLAVKCLGPLVGKVKEYQVENIVDTLCANMRSDKEQLRDIAGIGLKTVLSELPPAATGSGLAISVCRKITGQLTSAIAQQEDVAVQLEALDILSDMLSRLGAPLGTFHASLLHCLLPQLSSPRLAVRKRTVVALGHLAAACSTDLFVELADHLVDRLPGPRAPASPAAIRTLIQCLGSVGRQAGHRLGAHLDRLMPLVEEFCNLDDDELRESCLQAFEAFLRKCPKEMDPHVPNVTSLCLQYMKHDPNYNHDSDEEEQMETEDSEFSEQESEDEYSDDDDMSWKVRRAAAKCMAALISSRPDLLPDFHCTLAPALIRCFKEREENVKADIFGAYIMLLRHTRPPKGWLEAVEEPTQTGRNLNMLRAQVPLVMKALQRQLKDRNVRTRQGCFNLFTELAGVLPGCLAEHMTVLVSGIVFSLADYSSSSTIRMDALAFLQGLLGTEPAEAFHPHLPTLLPPVMACVADPFYKVAAEALLVLQELVRTLWPLDRPRLLDPEPYVGEMSTATLARLRATDLDQEVKERAISCVGHLVGHLGDRLGDDLEPTLLLLLDRLRNEITRLPAVKALTLVAVSPLRLDLQPILAEALPILASFLRKNQRALRLATLAALDALAQSQGLGLPPPAVRSVLAELPALVSENDMHVAQLAVDFLTTVTQTQPASLVEVSGPVLEELLQLLHSPLLPAGVLAATEGFLQALVGTRPPCVEYSELISLLTAPVYNQVGDGGPGLHKQVFHSLARCVAALSAACPQEAAGTASRLVCDARSPHSSTGVKVLAFLSLAEVGQVAGPGPQRELKTVLLEALGSPSEDVRAAAAYALGRVGAGNLPDFLPFLLAQIEAQPRRQYLLLHALREALGAAQPDNLKPYVEDVWALLFQRCESPEEGTRCVVAECIGKLVFVNPPFLLPRFRKQLAAGQPYTRSTVITAVKFLISDQPHSIDPLLKSFIAEFMESLQDPDLNVRRATLTFFNSAVHNKPSLVRDLLDDILPLLYQETKIRRDLIREVEMGPFKHTVDDGLDVRKAAFECMYSLLESCLGQLDICEFLNHVEDGLKDHYDIRMLTFIMLARLAALCPAPVLQRVDRLIEPLRATCTAKVKAGSVKQELEKQDELKRSAMRAVAALMTNPEVRKSPSVADFSTQIRSNPELATLFESIQKDTASGPSMDSMELS", "length": 1273 }, "evidence": [ { "id": "F1SQ89", "url": "https://omabrowser.org/oma/group/F1SQ89/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "SCF complex assembly", "id": "GO:0010265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010265", "evidence": [ { "database": "UniProtKB", "id": "F1SQ89", "url": "https://www.uniprot.org/uniprotkb/F1SQ89" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SQ89", "url": "https://www.uniprot.org/uniprotkb/F1SQ89" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQ89", "url": "https://www.uniprot.org/uniprotkb/F1SQ89" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SQ89", "url": "https://www.uniprot.org/uniprotkb/F1SQ89" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "TBP-class protein binding", "id": "GO:0017025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017025", "evidence": [ { "database": "UniProtKB", "id": "F1SQ89", "url": "https://www.uniprot.org/uniprotkb/F1SQ89" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ89-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1236, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ89-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ89" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ89", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ89" }, { "id": "PF08623", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08623" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TATA-binding protein interacting (TIP20)", "eco_id": "ECO_0000259", "start_pos": 1045, "end_pos": 1207, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 299, "end_pos": 301 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMY0-1", "uniprot_ac": "F1SMY0", "uniprot_id": "F1SMY0_PIG", "mass": { "chemical_mass": 86798.0, "monoisotopic_mass": 86798.0 }, "refseq": { "ac": "XP_003121743", "name": "cadherin-19 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121743" }, "gene_names": [ { "name": "CDH19", "type": "recommended", "evidence": [ { "id": "F1SMY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ] }, { "name": "CDH19", "type": "synonym", "evidence": [ { "id": "XP_003121743", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121743" } ] } ], "protein_names": [ { "name": "Cadherin 19", "type": "synonym", "evidence": [ { "id": "F1SMY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMY0/entry#names_and_taxonomy" } ] }, { "name": "cadherin-19 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003121743", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121743" } ] } ], "function": [ { "annotation": "Cadherins are calcium-dependent cell adhesion proteins.", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0#function" }, { "database": "UniProtKB", "id": "RU004357", "url": "https://www.uniprot.org/uniprotkb/RU004357#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDH19", "url": "https://www.uniprot.org/uniprotkb/F1SMY0", "locus": { "chromosome": "1", "start_pos": 155758548, "end_pos": 155669420, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004885", "url": "https://www.ensembl.org/id/ENSSSCG00000004885" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004885", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004885", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518408", "url": "https://www.ncbi.nlm.nih.gov/gene/100518408", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518408", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518408", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NAAMDYF", "url": "https://omabrowser.org/oma/group/NAAMDYF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMY0", "url": "https://www.orthodb.org/?gene=F1SMY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF323", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF323", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003121743", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121743", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QGW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SMY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNCCLLLTFMLGIPLLWPFLIATENSETEEVKPPEGIHFRVKRGWMWNQFFVPEEMNKSSHHIGQLRSDLDNGNNSFQYKLLGAGAGNIFVIDERTGDIYAVQKLDREEQSLYTLRAQVIDTTTGRAVEPESEFVIRVSDINDNEPKFLDEPYEAIVPEMSPEGTLVIQVTASDADDPSSGNNARLLYSLLQGQPYFSIEPTTGVIRISSKMDRELQDEYWVIIQAKDMIGLPGALSGTTSVLITLSDINDNKPIFKDSLYRLTVSESVPIGTSIGKIMAYDNDIGENAEMDYSIEDDSKTFDIITNNETQEGIVILRKKVDFEHQNYYHIRAKVKNRQVDEQLRIYHSEASTTFIKIQVEDVDEPPVFLLPYYIFEIFEGSPLGSFVGVVSAIDPDQRNSPIGYSVTRSKMFSIDDNGTIFTSNPLDREISAWYNLSVTATEKYDVEQISSVPVYVQVLNINDHAPEFSEYYEIYVCENAASGQVIQTISAVDRDESVEDHHFYFNLSMEEKNSSFIIIDNQDNTAVILTNRTGFSLQEEPVFYVSILITDNGIPPLTSTNTLTIHICDCDDNGSTQTCSNKDLMLSMGFKAEVIIAILICIIIIFGFIFLILGLKQRRKETLFPEKGEDFRENIFRYDDEGGGEEDTEAFDIVELRSSAAMRERKARRTPRAEIRSLCRQSLQVGPDSAIFRKFILEKLEEADTDPCAPPFDSLQTYAFEGTGSLAGSLSSLGSVVSDQDENYDYLNELGPRFKRLACMFGSAMQSNN", "length": 770, "header": "tr|F1SMY0-1|F1SMY0_PIG Isoform 1 of Cadherin 19 OS=Sus scrofa OX=9823 GN=CDH19 PE=4 SV=3 CANONICAL=F1SMY0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGW0-1", "url": "https://www.uniprot.org/uniprotkb/F1SMY0/entry#A0A5G2QGW0-1", "sequence": { "sequence": "MNCCLLLTFMLGIPLLWPFLIATENSETEEVKPPEGIHFRVKRGWMWNQFFVPEEMNKSSHHIGQLRSDLDNGNNSFQYKLLGAGAGNIFVIDERTGDIYAVQKLDREEQSLYTLRAQVIDTTTGRAVEPESEFVIRVSDINDNEPKFLDEPYEAIVPEMSPEGTLVIQVTASDADDPSSGNNARLLYSLLQGQPYFSIEPTTGVIRISSKMDRELQDEYWVIIQAKDMIGLPGALSGTTSVLITLSDINDNKPIFKDSLYRLTVSESVPIGTSIGKIMAYDNDIGENAEMDYSIEDDSKTFDIITNNETQEGIVILRKKVDFEHQNYYHIRAKVKNRQVDEQLRIYHSEASTTFIKIQVEDVDEPPVFLLPYYIFEIFEGSPLGSFVGVVSAIDPDQRNSPIGYSVTRSKMFSIDDNGTIFTSNPLDREISAWYNLSVTATEKYDVEQISSVPVYVQVLNINDHAPEFSEYYEIYVCENAASGQGLFF", "length": 489, "header": "tr|A0A5G2QGW0-1|F1SMY0_PIG Computationally mapped isoform of Cadherin 19 OS=Sus scrofa OX=9823 GN=CDH19 PE=4 SV=1 CANONICAL=F1SMY0-1" }, "locus": { "chromosome": "1", "start_pos": 155757154, "end_pos": 155697372, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088433.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088433.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064013.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064013.1" } ] } }, { "isoform_ac": "F1SMY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SMY0/entry#F1SMY0-1", "sequence": { "sequence": "MNCCLLLTFMLGIPLLWPFLIATENSETEEVKPPEGIHFRVKRGWMWNQFFVPEEMNKSSHHIGQLRSDLDNGNNSFQYKLLGAGAGNIFVIDERTGDIYAVQKLDREEQSLYTLRAQVIDTTTGRAVEPESEFVIRVSDINDNEPKFLDEPYEAIVPEMSPEGTLVIQVTASDADDPSSGNNARLLYSLLQGQPYFSIEPTTGVIRISSKMDRELQDEYWVIIQAKDMIGLPGALSGTTSVLITLSDINDNKPIFKDSLYRLTVSESVPIGTSIGKIMAYDNDIGENAEMDYSIEDDSKTFDIITNNETQEGIVILRKKVDFEHQNYYHIRAKVKNRQVDEQLRIYHSEASTTFIKIQVEDVDEPPVFLLPYYIFEIFEGSPLGSFVGVVSAIDPDQRNSPIGYSVTRSKMFSIDDNGTIFTSNPLDREISAWYNLSVTATEKYDVEQISSVPVYVQVLNINDHAPEFSEYYEIYVCENAASGQVIQTISAVDRDESVEDHHFYFNLSMEEKNSSFIIIDNQDNTAVILTNRTGFSLQEEPVFYVSILITDNGIPPLTSTNTLTIHICDCDDNGSTQTCSNKDLMLSMGFKAEVIIAILICIIIIFGFIFLILGLKQRRKETLFPEKGEDFRENIFRYDDEGGGEEDTEAFDIVELRSSAAMRERKARRTPRAEIRSLCRQSLQVGPDSAIFRKFILEKLEEADTDPCAPPFDSLQTYAFEGTGSLAGSLSSLGSVVSDQDENYDYLNELGPRFKRLACMFGSAMQSNN", "length": 770, "header": "tr|F1SMY0-1|F1SMY0_PIG Isoform 1 of Cadherin 19 OS=Sus scrofa OX=9823 GN=CDH19 PE=4 SV=3 CANONICAL=F1SMY0-1" }, "locus": { "chromosome": "1", "start_pos": 155757630, "end_pos": 155697372, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005391.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005391.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005256.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005256.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGW0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGW0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518408", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518408", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0KZW0-1", "protein_name": "Cadherin 19", "gene_name": "Cdh19", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNHYFLKYWILMVPLIWPCLKVAETLKIEKAQRAVPSLGRAKRGWVWKQFVVPEEMDTIQHVGRLRSDLDNGNNSFQYKLLGTGDGSFSIDEKTGDIFAMQKLDREKQSLYILRAQVIDTTIGKAVEPESEFVIRVSDVNDNEPRFLDEPYEAIVPEMSPEGTFVIKVTANDADDPTSGYHARILYNLEQGQPYFSVEPTTGVIRISSKMDRELQDTYCVIIQAKDMLGQPGALSGTTTISIKLSDINDNKPIFKESFYRFTISESAPSGTTIGKIMAYDDDIGENAEMDYSIEDDESQIFDIVIDNETQEGIVILKKKVDFEHQNHYGIRVKVKNCHVDEELAPAHVNASTTYIKVQVEDEDEPPTFLLPYYIFEIPEGKPYGTMVGTVSAVDPDRRQSPMRYSLIGSKMFDINGNGTIVTTNLLDREVSAWYNLSVTATETLQIMSLNRPNIAYNVQQISSAHVYVQVLNINDHAPEFSQLYETYVCENAESGEIIQTISAIDRDESIEDHHFYFNHSVEDTNNSSFILTDNQDNTAVILSNRAGFSLKEETVFYMIILIADNGIPPLTSTNTLTIQVCDCGDSRSTETCTSKELLFIMGFKAEAIIAIVICVMVIFGFIFLILALKQRRKETLFPEKTEDFRENIFCYDDEGGGEEDSEAFDIIELRQSTVMRERKPRKSRSAEIRSLYRQSLQVGPDSAIFRKFILEKLEEANTDSSAPPFDSLQTFAYEGTGSSAGSLSSLGSSVTDQEDDFDYLNDLGPCFKRLANMFGSAVQPDN", "length": 782 }, "evidence": [ { "id": "F1SMY0", "url": "https://omabrowser.org/oma/group/F1SMY0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q3A7-1", "protein_name": "Cadherin 19, type 2", "gene_name": "Cdh19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNYCFLKHWILMIPLLWPCLKVSETLKAEKARRTVPSTWRAKRAWVWRPFVVLEEMDDIQCVGKLRSDLDNGNNSFQYKLLGIGAGSFSINERTGEICAIQKLDREEKSLYILRAQVIDTTIGKAVETESEFVIRVLDINDNEPRFLDEPYEAIVPEMSPEGTFVIKVTANDADDPSTGYHARILYNLERGQPYFSVEPTTGVIRISSKMDRELQDTYCVIIQAKDMLGQPGALSGTTTVSIKLSDINDNKPIFKESFYRFTISESAPIGTSIGKIMAYDDDIGENAEMEYSIEDDDSKIFDIIIDNDTQEGIVILKKKVDFEQQSYYGIRAKVKNCHVDEELAPAHVNASTTYIKVQVEDEDEPPVFLLPYYILEIPEGKPYGTIVGTVSATDPDRRQSPMRYYLTGSKMFDINDNGTIITTNMLDREVSAWYNLTVTATETYNVQQISSAHVYVQVFNINDNAPEFSQFYETYVCENAESGEIVQIISAIDRDESIEDHHFYFNHSLEDTNNSSFMLTDNQDNTAVILSNRTGFNLKEEPVFYMIILIADNGIPSLTSTNTLTIQVCDCGDSRNTETCANKGLLFIMGFRTEAIIAIMICVMVIFGFFFLILALKQRRKETLFPEKTEDFRENIFCYDDEGGGEEDSEAFDIVELRQSTVMRERKPQRSKSAEIRSLYRQSLQVGPDSAIFRKFILEKLEEANTDPCAPPFDSLQTFAYEGTGSSAGSLSSLASRDTDQEDDFDYLNDLGPRFKRLASMFGSAVQPNN", "length": 770 }, "evidence": [ { "id": "F1SMY0", "url": "https://omabrowser.org/oma/group/F1SMY0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H159-1", "protein_name": "Cadherin-19", "gene_name": "CDH19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNCYLLLRFMLGIPLLWPCLGATENSQTKKVKQPVRSHLRVKRGWVWNQFFVPEEMNTTSHHIGQLRSDLDNGNNSFQYKLLGAGAGSTFIIDERTGDIYAIQKLDREERSLYILRAQVIDIATGRAVEPESEFVIKVSDINDNEPKFLDEPYEAIVPEMSPEGTLVIQVTASDADDPSSGNNARLLYSLLQGQPYFSVEPTTGVIRISSKMDRELQDEYWVIIQAKDMIGQPGALSGTTSVLIKLSDVNDNKPIFKESLYRLTVSESAPTGTSIGTIMAYDNDIGENAEMDYSIEEDDSQTFDIITNHETQEGIVILKKKVDFEHQNHYGIRAKVKNHHVPEQLMKYHTEASTTFIKIQVEDVDEPPLFLLPYYVFEVFEETPQGSFVGVVSATDPDNRKSPIRYSITRSKVFNINDNGTITTSNSLDREISAWYNLSITATEKYNIEQISSIPLYVQVLNINDHAPEFSQYYETYVCENAGSGQVIQTISAVDRDESIEEHHFYFNLSVEDTNNSSFTIIDNQDNTAVILTNRTGFNLQEEPVFYISILIADNGIPSLTSTNTLTIHVCDCGDSGSTQTCQYQELVLSMGFKTEVIIAILICIMIIFGFIFLTLGLKQRRKQILFPEKSEDFRENIFQYDDEGGGEEDTEAFDIAELRSSTIMRERKTRKTTSAEIRSLYRQSLQVGPDSAIFRKFILEKLEEANTDPCAPPFDSLQTYAFEGTGSLAGSLSSLESAVSDQDESYDYLNELGPRFKRLACMFGSAVQSNN", "length": 772 }, "evidence": [ { "id": "F1SMY0", "url": "https://omabrowser.org/oma/group/F1SMY0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "catenin complex", "id": "GO:0016342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016342", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "cell-cell junction assembly", "id": "GO:0007043", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007043", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "adherens junction organization", "id": "GO:0034332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034332", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules", "id": "GO:0016339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016339", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" }, { "name": "cell-cell adhesion mediated by cadherin", "id": "GO:0044331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044331", "evidence": [ { "database": "UniProtKB", "id": "F1SMY0", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 418, "end_pos": 420, "annotation": "n_glycosylation_sequon" }, { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" }, { "start_pos": 507, "end_pos": 509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 514, "end_pos": 516, "annotation": "n_glycosylation_sequon" }, { "start_pos": 532, "end_pos": 534, "annotation": "n_glycosylation_sequon" }, { "start_pos": 574, "end_pos": 576, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMY0" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 148, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 308, "end_pos": 310 }, { "start_pos": 418, "end_pos": 420 }, { "start_pos": 436, "end_pos": 438 }, { "start_pos": 507, "end_pos": 509 }, { "start_pos": 514, "end_pos": 516 }, { "start_pos": 532, "end_pos": 534 }, { "start_pos": 574, "end_pos": 576 }, { "start_pos": 57, "end_pos": 59 }, { "start_pos": 74, "end_pos": 76 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIK6-1", "uniprot_ac": "F1SIK6", "uniprot_id": "F1SIK6_PIG", "mass": { "chemical_mass": 42238.0, "monoisotopic_mass": 42238.0 }, "refseq": {}, "gene_names": [ { "name": "NPSR1", "type": "recommended", "evidence": [ { "id": "F1SIK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ] } ], "protein_names": [ { "name": "Neuropeptide S receptor", "type": "recommended", "evidence": [ { "id": "F1SIK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIK6/entry#names_and_taxonomy" } ] }, { "name": "G-protein coupled receptor 154", "type": "synonym", "evidence": [ { "id": "F1SIK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIK6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "G-protein coupled receptor for neuropeptide S (NPS). Receptor activation by NPS initiates a G(q)/GNAQ-dependent phospholipase C-activating signaling pathway, resulting in Ca(2+) mobilization from intracellular stores and increased intracellular Ca(2+) levels. In addition to this pathway, NPS binding to its receptor activates cAMP/PKA signal transduction. Finally, both pathways converge to activate ERK1/ERK2 phosphorylation and signaling cascade. Inhibits cell growth in response to NPS binding.", "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6#function" }, { "database": "UniProtKB", "id": "ARBA00094235", "url": "https://www.uniprot.org/uniprotkb/ARBA00094235#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NPSR1", "url": "https://www.uniprot.org/uniprotkb/F1SIK6", "locus": { "chromosome": "18", "start_pos": 38942487, "end_pos": 39085754, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016664", "url": "https://www.ensembl.org/id/ENSSSCG00000016664" } ] } } ], "crossref": [ { "id": "F1SIK6", "url": "https://alphafold.ebi.ac.uk/entry/F1SIK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016664", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016664", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15197", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15197", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027294", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027294", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24244", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24244", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24244:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24244:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-375276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QH35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH35-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH35-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA10", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RA10-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RA10-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIK6-1", "url": "https://www.uniprot.org/uniprotkb/F1SIK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPASLTEDSPVTNGEQAPDSPVLCTATVTFTAVAEGEEWGSFYYSFKTEQLITLWVLFVFTIVGNAVVLFSTWRRKRKSRMTFFVTQLAITDSFTGLVNILTDIIWRFTGDFMAPDLVCRVVRYLQVVLLYASTYVLVSLSIDRYHAIVYPMKFLQGEKQAKILIAIAWSLSFLFSIPTLIIFGKRELSNGEVQCWALWPDDSYWTPYMTIVAFLVYFIPLTIISIIYAIVIRTIWIKSKAHETVISNCSDGKLCTSYNRGLISKAKIKAIKYSIVIILAFICCWSPYFLFDILDNFSLLPNTKDRFYASVIIQNLPALNSAINPLIYCVFSSSICFPCGEQRSRDSRMTCRERIERHEMQVLSKPEFM", "length": 369, "header": "tr|F1SIK6-1|F1SIK6_PIG Isoform 1 of Neuropeptide S receptor OS=Sus scrofa OX=9823 GN=NPSR1 PE=3 SV=3 CANONICAL=F1SIK6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH35-1", "url": "https://www.uniprot.org/uniprotkb/F1SIK6/entry#A0A5G2QH35-1", "sequence": { "sequence": "MPASLTEDSPVTNGEQAPDSPVLCTATVTFTAVAEGEEWGSFYYSFKTEQLITLWVLFVFTIVGNAVVLFSTWRRKRKSRMTFFVTQLAITEKQAKILIAIAWSLSFLFSIPTLIIFGKRELSNGEVQCWALWPDDSYWTPYMTIVAFLVYFIPLTIISIIYAIVIRTIWIKSKAHETVISNCSDGKLCTSYNRGLISKAKIKAIKYSIVIILAFICCWSPYFLFDILDNFSLLPNTKDRFYASVIIQNLPALNSAINPLIYCVFSSSICFPCGEQRSRDSRMTCRERIERHEMQVLSKPEFM", "length": 303, "header": "tr|A0A5G2QH35-1|F1SIK6_PIG Computationally mapped isoform of Neuropeptide S receptor OS=Sus scrofa OX=9823 GN=NPSR1 PE=3 SV=1 CANONICAL=F1SIK6-1" }, "locus": { "chromosome": "18", "start_pos": 39085754, "end_pos": 38942890, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089116.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089116.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063134.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063134.1" } ] } }, { "isoform_ac": "A0A5G2RA10-1", "url": "https://www.uniprot.org/uniprotkb/F1SIK6/entry#A0A5G2RA10-1", "sequence": { "sequence": "MPASLTEDSPVTNGEQAPDSPVLCTATVTFTAVAEGEEWGSFYYSFKTEQLITLWVLFVFTIVGNAVVLFSTWRRKRKSRMTFFVTQLAITDSFTGLVNILTDIIWRFTGDFMAPDLVCRVVRYLQILIMELFHLQKTNRE", "length": 141, "header": "tr|A0A5G2RA10-1|F1SIK6_PIG Computationally mapped isoform of Neuropeptide S receptor OS=Sus scrofa OX=9823 GN=NPSR1 PE=3 SV=1 CANONICAL=F1SIK6-1" }, "locus": { "chromosome": "18", "start_pos": 39085754, "end_pos": 38980195, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075070.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075070.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067445.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067445.1" } ] } }, { "isoform_ac": "F1SIK6-1", "url": "https://www.uniprot.org/uniprotkb/F1SIK6/entry#F1SIK6-1", "sequence": { "sequence": "MPASLTEDSPVTNGEQAPDSPVLCTATVTFTAVAEGEEWGSFYYSFKTEQLITLWVLFVFTIVGNAVVLFSTWRRKRKSRMTFFVTQLAITDSFTGLVNILTDIIWRFTGDFMAPDLVCRVVRYLQVVLLYASTYVLVSLSIDRYHAIVYPMKFLQGEKQAKILIAIAWSLSFLFSIPTLIIFGKRELSNGEVQCWALWPDDSYWTPYMTIVAFLVYFIPLTIISIIYAIVIRTIWIKSKAHETVISNCSDGKLCTSYNRGLISKAKIKAIKYSIVIILAFICCWSPYFLFDILDNFSLLPNTKDRFYASVIIQNLPALNSAINPLIYCVFSSSICFPCGEQRSRDSRMTCRERIERHEMQVLSKPEFM", "length": 369, "header": "tr|F1SIK6-1|F1SIK6_PIG Isoform 1 of Neuropeptide S receptor OS=Sus scrofa OX=9823 GN=NPSR1 PE=3 SV=3 CANONICAL=F1SIK6-1" }, "locus": { "chromosome": "18", "start_pos": 39085754, "end_pos": 38942890, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018143.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018143.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017653.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017653.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QH35", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-375276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375276", "resource": "Reactome", "description": "Peptide ligand-binding receptors" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "neuropeptide receptor activity", "id": "GO:0008188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008188", "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ], "pmid": "" }, { "name": "vasopressin receptor activity", "id": "GO:0005000", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005000", "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of ERK1 and ERK2 cascade", "id": "GO:0070374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070374", "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ], "pmid": "" }, { "name": "phospholipase C-activating G protein-coupled receptor signaling pathway", "id": "GO:0007200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007200", "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ], "pmid": "" }, { "name": "positive regulation of release of sequestered calcium ion into cytosol", "id": "GO:0051281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051281", "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ], "pmid": "" }, { "name": "positive regulation of cAMP/PKA signal transduction", "id": "GO:0141163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141163", "evidence": [ { "database": "UniProtKB", "id": "F1SIK6", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIK6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 369, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIK6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIK6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIK6" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 328, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 248, "end_pos": 250 }, { "start_pos": 296, "end_pos": 298 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIF5-1", "uniprot_ac": "F1SIF5", "uniprot_id": "F1SIF5_PIG", "mass": { "chemical_mass": 29901.0, "monoisotopic_mass": 29901.0 }, "refseq": {}, "gene_names": [ { "name": "PTPMT1", "type": "recommended", "evidence": [ { "id": "F1SIF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ] } ], "protein_names": [ { "name": "Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1", "type": "recommended", "evidence": [ { "id": "F1SIF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIF5/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.16", "type": "synonym", "evidence": [ { "id": "F1SIF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIF5/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.27", "type": "synonym", "evidence": [ { "id": "F1SIF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIF5/entry#names_and_taxonomy" } ] }, { "name": "Protein-tyrosine phosphatase mitochondrial 1", "type": "synonym", "evidence": [ { "id": "F1SIF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIF5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). PGP is an essential intermediate in the biosynthetic pathway of cardiolipin, a mitochondrial-specific phospholipid regulating the membrane integrity and activities of the organelle. Has also been shown to display phosphatase activity toward phosphoprotein substrates, specifically mediates dephosphorylation of mitochondrial proteins, thereby playing an essential role in ATP production. Has probably a preference for proteins phosphorylated on Ser and/or Thr residues compared to proteins phosphorylated on Tyr residues. Probably involved in regulation of insulin secretion in pancreatic beta cells. Prevents intrinsic apoptosis, by regulating mitochondrial membrane integrity.", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5#function" }, { "database": "UniProtKB", "id": "ARBA00094371", "url": "https://www.uniprot.org/uniprotkb/ARBA00094371#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTPMT1", "url": "https://www.uniprot.org/uniprotkb/F1SIF5", "locus": { "chromosome": "2", "start_pos": 15043613, "end_pos": 15052831, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013226", "url": "https://www.ensembl.org/id/ENSSSCG00000013226" } ] } } ], "crossref": [ { "id": "F1SIF5", "url": "https://alphafold.ebi.ac.uk/entry/F1SIF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013226", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013226", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14524", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14524", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044596", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044596", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46712", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46712", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46712:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46712:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "20629", "url": "https://www.rhea-db.org/rhea/20629", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "33751", "url": "https://www.rhea-db.org/rhea/33751", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "42304", "url": "https://www.rhea-db.org/rhea/42304", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "42308", "url": "https://www.rhea-db.org/rhea/42308", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "42320", "url": "https://www.rhea-db.org/rhea/42320", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "42584", "url": "https://www.rhea-db.org/rhea/42584", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47004", "url": "https://www.rhea-db.org/rhea/47004", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QLX6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIF5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPVPGGPGCPDVSPESWPKVSALEGPAPAAKPTREAAEDSQSSASSPSWPSSRPPTAGVGRSSLRWAGWGGMAAGTLLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYNRIDSTVLLGALPLRSMTRRLVQDENVRGVITMNEEYETRFLCNSSKEWKNLGVEQLRLSTVDMTGVPTLANLQKGVQFALKYQSQGQSVYVHCKAGRSRSATMVAAYLIQMYNWTPEEAVRAITKIRSHIYIRPGQLEVLKEFHKVITAGAAKNDTCHTLQS", "length": 273, "header": "tr|F1SIF5-1|F1SIF5_PIG Isoform 1 of Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Sus scrofa OX=9823 GN=PTPMT1 PE=1 SV=3 CANONICAL=F1SIF5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QLX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SIF5/entry#A0A5G2QLX6-1", "sequence": { "sequence": "MGPVPGGPGCPDVSPESWPKVSALEGPAPAAKPTREAAEDSQSSASSPSWPSSRPPTAGVGRSSLRWAGWGGMAAGTLLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYNRIDSTVLLGALPLRSMTRRLVQDENVRGVITMNEEYETRFLCNSSKMYNWTPEEAVRAITKIRSHIYIRPGQLEVLKEFHKVITAGAAKNDTCHTLQS", "length": 209, "header": "tr|A0A5G2QLX6-1|F1SIF5_PIG Computationally mapped isoform of Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Sus scrofa OX=9823 GN=PTPMT1 PE=1 SV=1 CANONICAL=F1SIF5-1" }, "locus": { "chromosome": "2", "start_pos": 15052824, "end_pos": 15044617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087744.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087744.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065025.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065025.1" } ] } }, { "isoform_ac": "F1SIF5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIF5/entry#F1SIF5-1", "sequence": { "sequence": "MGPVPGGPGCPDVSPESWPKVSALEGPAPAAKPTREAAEDSQSSASSPSWPSSRPPTAGVGRSSLRWAGWGGMAAGTLLEAGLARVLFYPTLLYTLFRGKVPGRAHRDWYNRIDSTVLLGALPLRSMTRRLVQDENVRGVITMNEEYETRFLCNSSKEWKNLGVEQLRLSTVDMTGVPTLANLQKGVQFALKYQSQGQSVYVHCKAGRSRSATMVAAYLIQMYNWTPEEAVRAITKIRSHIYIRPGQLEVLKEFHKVITAGAAKNDTCHTLQS", "length": 273, "header": "tr|F1SIF5-1|F1SIF5_PIG Isoform 1 of Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1 OS=Sus scrofa OX=9823 GN=PTPMT1 PE=1 SV=3 CANONICAL=F1SIF5-1" }, "locus": { "chromosome": "2", "start_pos": 15052824, "end_pos": 15044617, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014446.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014446.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014054.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014054.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QLX6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLX6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "phosphoprotein phosphatase activity", "id": "GO:0004721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004721", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "pmid": "" }, { "name": "protein serine/threonine phosphatase activity", "id": "GO:0004722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004722", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "pmid": "" }, { "name": "phosphatidylglycerophosphatase activity", "id": "GO:0008962", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008962", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "pmid": "" }, { "name": "phosphatidylinositol-5-phosphate phosphatase activity", "id": "GO:0102091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0102091", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of intrinsic apoptotic signaling pathway", "id": "GO:2001242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001242", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "pmid": "" }, { "name": "mitochondrial fragmentation involved in apoptotic process", "id": "GO:0043653", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043653", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "pmid": "" }, { "name": "cardiolipin biosynthetic process", "id": "GO:0032049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032049", "evidence": [ { "database": "UniProtKB", "id": "F1SIF5", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20629", "name": "", "equation": "O-phospho-L-seryl-[protein] + H2O = L-seryl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20629", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20629" } ] }, { "id": "33751", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero-3'-phosphate) + H2O = a 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "33751", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/33751" } ] }, { "id": "42304", "name": "", "equation": "1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-sn-glycerol-3'-phosphate) + H2O = 1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-sn-glycerol) + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "42304", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/42304" } ] }, { "id": "42308", "name": "", "equation": "1,2-dioctanoyl-sn-glycero-3-phospho-(1D-myo-inositol-5-phosphate) + H2O = 1,2-dioctanoyl-sn-glycero-3-phospho-(1D-myo-inositol) + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "42308", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/42308" } ] }, { "id": "42320", "name": "", "equation": "a 1-acyl-2-hexanoyl-sn-glycero-3-phospho-(1D-myo-inositol-5-phosphate) + H2O = a 1-acyl-2-hexanoyl-sn-glycero-3-phospho-(1D-myo-inositol) + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "42320", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/42320" } ] }, { "id": "42584", "name": "", "equation": "1,2-dibutyryl-sn-glycero-3-phospho-(1D-myo-inositol-5-phosphate) + H2O = 1,2-dibutyryl-sn-glycero-3-phospho-(1D-myo-inositol) + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "42584", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/42584" } ] }, { "id": "47004", "name": "", "equation": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47004", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47004" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIF5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 273, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIF5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIF5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" }, { "id": "PS50056", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50056" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine specific protein phosphatases", "eco_id": "ECO_0000259", "start_pos": 181, "end_pos": 249, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIF5" }, { "id": "PS50054", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50054" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine-protein phosphatase", "eco_id": "ECO_0000259", "start_pos": 109, "end_pos": 260, "start_aa": "Trp", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 154, "end_pos": 156 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 265, "end_pos": 267 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK81-1", "uniprot_ac": "F1SK81", "uniprot_id": "F1SK81_PIG", "mass": { "chemical_mass": 97406.0, "monoisotopic_mass": 97406.0 }, "refseq": {}, "gene_names": [ { "name": "IQSEC3", "type": "recommended", "evidence": [ { "id": "F1SK81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ] } ], "protein_names": [ { "name": "IQ motif and SEC7 domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "F1SK81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK81/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Acts as a guanine nucleotide exchange factor (GEF) for ARF1.", "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81#function" }, { "database": "UniProtKB", "id": "ARBA00056967", "url": "https://www.uniprot.org/uniprotkb/ARBA00056967#function" }, { "database": "UniProtKB", "id": "A0A5G2QME1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IQSEC3", "url": "https://www.uniprot.org/uniprotkb/F1SK81", "locus": { "chromosome": "5", "start_pos": 67540485, "end_pos": 67445838, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000748", "url": "https://www.ensembl.org/id/ENSSSCG00000000748" } ] } } ], "crossref": [ { "id": "F1SK81", "url": "https://alphafold.ebi.ac.uk/entry/F1SK81", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000748", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000748", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00171", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00171", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13318", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13318", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QALTCYA", "url": "https://omabrowser.org/oma/group/QALTCYA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10663:SF318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10663:SF318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01369", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01369", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16453", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16453", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QME1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QME1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK81-1", "url": "https://www.uniprot.org/uniprotkb/F1SK81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEHKYGGHLVSRRAACTIQTAFRQYQLSKNFEKIRNSLLESRLPRRISLRKVRAPTAESLAAERALLEGCGLAGLPLVRSPSLPPTFAGTLTELEDSFTEQVQSLAKSIDDALSTWSLKTMCSLQESGAYQIHQALRAGAGPPGLEAEVREPEGVHPGAGPEPTEPTGPPQGHGSTLMMAFRDVTVQIASQNISVSSSTALSVANCLGAQTAPAPAESAAGKVEQGEAGGQAGPEAPSASQGGAPAEDVRAEARARGALSASPPGAAGQVAAAAAAEEEEDEEEEAEEARKGAEAEVEAEAVDNSEQLSSSSTSTKSAKSGSEASASASKEALQAMILSLPRYHCENPASCKSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSAMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVVQQFHNPDTIFILAFAIILLNTDMYSPNIKPDRKMMLEDFIRNLRGVDDGADIPRELVVGIYERIQQKELKSNEDHVTYVTKVEKSIVGMKTVLSVPHRRLVCCSRLFEVTDVNKLQKQAAHQREVFLFNDLLVILKLCPKKKSASTYTFCKAVGLLGMQFHLFENEYYSHGITLVTPLSGSEKKQVLHFCALGLDEMQKFVEDLKESIAEVTELEQIRIEWELEKQQGAKTLSFKASGAQVDPQSKQGSPTAKREAAPGEKAAESSVEVSGGLAAQVSIHNRLQTSQHNFGLGAERGAPAPDLQPSPLREQPPPLPLPPPTPPGTLVQCQQIVKVIVLDKPCLARMEPLLSQALSCYASSSSDSCSSTPLGGPGSPVKVIHQPPLPPPPPPYNHPHQFCPPGSLLHRRRCSSGARSLV", "length": 900, "header": "tr|F1SK81-1|F1SK81_PIG Isoform 1 of IQ motif and SEC7 domain-containing protein 3 OS=Sus scrofa OX=9823 GN=IQSEC3 PE=1 SV=2 CANONICAL=F1SK81-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QME1-1", "url": "https://www.uniprot.org/uniprotkb/F1SK81/entry#A0A5G2QME1-1", "sequence": { "sequence": "MLEHKYGGHLVSRRAACTIQTAFRQYQLSKNFEKIRNSLLESRLPRRISLRKVRAPTAESLAAERALLEGCGLAGLPLVRSPSLPPTFAGTLTELEDSFTEQVQSLAKSIDDALSTWSLKTMCSLQESGAYQIHQALRAGAGPPGLEAEVREPEGVHPGAGPEPTEPTGPPQGHGSTLMMAFRDVTVQIASQNISVSSSTALSVANCLGAQTAPAPAESAAGKVEQGEAGGQAGPEAPSASQGGAPAEDVRAEARARGALSASPPGAAGQVAAAAAAEEEEDEEEEAEEARKGAEAEVEAEAVDNSEQLSSSSTSTKSAKSGSEASASASKEALQAMILSLPRYHCENPASCKSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSAMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVVQQFHNPDTIFILAFAIILLNTDMYSPNIKPDRKMMLEDFIRNLRGVDDGADIPRELVVGIYERIQQKELKSNEDHVTYVTKVEKSIVGMKTVLSVPHRRLVCCSRLFEVTDVNKLQKQAAHQREVFLFNDLLVILKLCPKKKSASTYTFCKAVGLLGMQFHLFENEYYSHGITLVTPLSGSEKKQVLHFCALGLDEMQKFVEDLKESIAEVTELEQIRIEWELEKQQGAKTLSFKASGAQVDPQSKQGSPTGECQTPGLLLQEGHSAPLAVGAWGTGVGRRHSPASSPGPQQWACGGGGRQTCPLTNCTEAQGCVRRHWPPWGSQAKAPTSRPVPAPGHLCTHTPSL", "length": 829, "header": "tr|A0A5G2QME1-1|F1SK81_PIG Computationally mapped isoform of IQ motif and SEC7 domain-containing protein 3 OS=Sus scrofa OX=9823 GN=IQSEC3 PE=1 SV=1 CANONICAL=F1SK81-1" }, "locus": { "chromosome": "5", "start_pos": 67532160, "end_pos": 67500789, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085918.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085918.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065788.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065788.1" } ] } }, { "isoform_ac": "F1SK81-1", "url": "https://www.uniprot.org/uniprotkb/F1SK81/entry#F1SK81-1", "sequence": { "sequence": "MLEHKYGGHLVSRRAACTIQTAFRQYQLSKNFEKIRNSLLESRLPRRISLRKVRAPTAESLAAERALLEGCGLAGLPLVRSPSLPPTFAGTLTELEDSFTEQVQSLAKSIDDALSTWSLKTMCSLQESGAYQIHQALRAGAGPPGLEAEVREPEGVHPGAGPEPTEPTGPPQGHGSTLMMAFRDVTVQIASQNISVSSSTALSVANCLGAQTAPAPAESAAGKVEQGEAGGQAGPEAPSASQGGAPAEDVRAEARARGALSASPPGAAGQVAAAAAAEEEEDEEEEAEEARKGAEAEVEAEAVDNSEQLSSSSTSTKSAKSGSEASASASKEALQAMILSLPRYHCENPASCKSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSAMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVVQQFHNPDTIFILAFAIILLNTDMYSPNIKPDRKMMLEDFIRNLRGVDDGADIPRELVVGIYERIQQKELKSNEDHVTYVTKVEKSIVGMKTVLSVPHRRLVCCSRLFEVTDVNKLQKQAAHQREVFLFNDLLVILKLCPKKKSASTYTFCKAVGLLGMQFHLFENEYYSHGITLVTPLSGSEKKQVLHFCALGLDEMQKFVEDLKESIAEVTELEQIRIEWELEKQQGAKTLSFKASGAQVDPQSKQGSPTAKREAAPGEKAAESSVEVSGGLAAQVSIHNRLQTSQHNFGLGAERGAPAPDLQPSPLREQPPPLPLPPPTPPGTLVQCQQIVKVIVLDKPCLARMEPLLSQALSCYASSSSDSCSSTPLGGPGSPVKVIHQPPLPPPPPPYNHPHQFCPPGSLLHRRRCSSGARSLV", "length": 900, "header": "tr|F1SK81-1|F1SK81_PIG Isoform 1 of IQ motif and SEC7 domain-containing protein 3 OS=Sus scrofa OX=9823 GN=IQSEC3 PE=1 SV=2 CANONICAL=F1SK81-1" }, "locus": { "chromosome": "5", "start_pos": 67537538, "end_pos": 67500789, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000812.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000812.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000796.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000796.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 165, "start_aa": "Thr", "end_pos": 165, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr165", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 803, "start_aa": "Thr", "end_pos": 803, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr803", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QME1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QME1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "Q3TES0-1", "protein_name": "IQ motif and SEC7 domain-containing protein 3", "gene_name": "Iqsec3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESLLENPVRAVLYLKELTAIVQNQQSLIHTQRQRIDELERRLDELSAENRSLWEHQQLLQAQPPPGLVPPPPSAPLPAPAVTAPAAAAAQEPLQDHGQLIPASPEPPLQHHGQLLAQPQPAPSSRVQTPQSPHQHPVAPGAIADKEKERPSSCCAAAGALLQHASPAALGKGVLSRRPENETVLHQFCCPAADTEQKPACSDLASQSDGSCAQAGGGMEDSVVAAVAAGRPSAHAPKAQAPELQQEEERPGAVGSPRAGPLRAASPGRQQPALATALCSHTPAASEYELSLDLKNKQIEMLEHKYGGHLVSRRAACTIQTAFRQYQLSKNFEKIRNSLLESRLPRRISLRKVRAPTAESLVAEKALLEGCGLLGLPLGRSPSLPPTFAGSLTELEDSFTEQVQSLAKSIDDALSTWSLKTMCSLQESGAYQLHQALHPSAGQPGLETEAAAREPESGPGSGDEAGGLPQGHSGTLMMAFRDVTVQIANQNISVSSSTALSVANCLGAQTAQATAEPAAAQAEQEDTADQEVSEVPASEQMDPPSEDSEAAESRAQSAQEPAVAQAVVEEAVATEAEEEEEGAKQAGKGAEAEGGDNSEQLSSSSASTKSAKSSSEASAAASKEALQAVILSLPRYHCENPASCRSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSNMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVVQQFHNPDTIFILAFAIILLNTDMYSPNIKPDRKMMLEDFIRNLRGVDDGADIPRELVVGIYERIQQKELKSNEDHVTYVTKVEKSIVGMKTVLSMPHRRLVCCSRLFEVTDVNKLQKQAAHQREVFLFNDLLVILKLCPKKKSSFTYTFCKAVGLLGMRFHLFENEYYSHGITLATPLSGSEKKQVLHFCALGSDEMQKFVEDLKESIAEVTELEQIRIEWELEKQQGTKTLSVRSAGAQGDPQSKQGSPTAKREAMAGEKAAESSGEVSIHNRLQTSQHSPKLGVERGAPAPSPPTSPPPLPPDPQPSPLREQPPPLPLPPPTPPGTLVQCQQIVKVIVLDKPCLARMEPLLSQALSCYASSSSDSCGSTPLRGPGSPVKVIHQPPLPPPPPPYNHPHQFCPPGSMLLRRRYSSGSRSLV", "length": 1195 }, "evidence": [ { "id": "F1SK81", "url": "https://omabrowser.org/oma/group/F1SK81/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q76M68-1", "protein_name": "IQ motif and SEC7 domain-containing protein 3", "gene_name": "Iqsec3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESLLENPVRAVLYLKELTAIVQNQQSLIHTQRQRIDELERRLDELSAENRSLWEHQQLLQAQPPPGLVPPPSAPLPAPAATAPAATAAQEPLQDHGQLIPATPEPPLQHHGQLLAQPQPAPSSRVQTPQSPHQHPVAPGAVADKEKERPSSCCAAAGALLQHASPAALGKGVLSRRPKNETVLHQFCCPATDTEQKPACSDLASQSDGSCAQAGGGMEDSVVAAVAAGRPSAHAPKAQAPELQQEEERPGAVGSPRAGPLRAASPGQQQPALATALCSHTPAASEYELSLDLKNKQIEMLEHKYGGHLVSRRAACTIQTAFRQYQLSKNFEKIRNSLLESRLPRRISLRKVRAPTAESLVAEKALLESCGLLGLPLGRSPSLPPTFAGSLTELEDSFTEQVQSLAKSIDDALSTWSLKTMCSLQESGAYQLHQALHPSAGQPGLETEAAREPDSGPGSGDEAGSLPQGHSGTLMMAFRDVTVQIANQNISVSSSTALSVANCLGAQTAQATAEPAAVQTEQGDAATQEVSEVPASELMDPPVEDSEAAESGAQSAHEPTVAEAVVEEAVATEAEEEEEGAGQAGKGAEAEVGDNSEQLSSSSASTKSAKSGSEVSAAASKEALQAVILSLPRYHCENPASCRSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSNMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVVQQFHNPDTIFILAFAIILLNTDMYSPNIKPDRKMMLEDFIRNLRGVDDGADIPRELVVGIYERIQQKELKSNEDHVTYVTKVEKSIVGMKTVLSMPHRRLVCCSRLFEVTDVNKLQKQAAHQREVFLFNDLLVILKLCPKKKSSFTYTFCKAVGLLGMRFHLFENEYYSHGITLATPLSGSEKKQVLHFCALGSDEMQKFVEDLKESIAEVTELEQIRIEWELERQQGTKTLSARSAGAQGDPQSKQGSPTAKREAMAGEKATESSGEVSIHNRLQTFQHSPKLGVERGAPAPSPPTSPPPPLPPDPQPSPLREQPPPLPLPPPTPPGTLVQCQQIVKVIVLDKPCLARMEPLLSQALSCYASSSSDSCGSTPLRGPGSPVKVIHQPPLPPPPPPYNHPHQFCPPGSLLLRRRYSSGSRSLV", "length": 1194 }, "evidence": [ { "id": "F1SK81", "url": "https://omabrowser.org/oma/group/F1SK81/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9UPP2-1", "protein_name": "IQ motif and SEC7 domain-containing protein 3", "gene_name": "IQSEC3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESLLENPVRAVLYLKELTAIVQNQQSLIHTQRERIDELERRLDELSAENRSLWEHQQLLQAQPPPGLVPPSSAPLPAAPATAPAAAARAQEPLQDQGQRSAAAPHPAPDRPPRQHHGQLLEQPQRGPGSRAHTPQSPHKHLGTQGAVTDKEKERPPSCCAAAGALLQHKSPSALGKGVLSRRPENETVLHQFCCPAADACSDLASQSDGSCTQAGGGMEDSVVAAAAVAAGRPSAHAPKAQAQELQEEEERPGAGAASPRAGPQHKASPGRQQPALATALCPHAPAASDYELSLDLKNKQIEMLEHKYGGHLVSRRAACTIQTAFRQYQLSKNFEKIRNSLLESRLPRRISLRKVRSPTAESLAAEKALMEGYGLVGLPLVRSPSLPPTFAGTLTELEDSFTEQVQSLAKSIDDALSTWSLKTMCSLRESGAYQLHQALQAAAGPPGLEAEGRAPESAGPGPGDDAAETPGLPPAHSGTLMMAFRDVTVQIANQNISVSSSTALSVANCLGAQTVQAPAEPAAGKAEQGETSGREAPEAPAVGREDASAEDSCAEAAASGAADGATAPKTEEEEEEEETAEVGRGAEAEAGDLEQLSSSSTSTKSAKSGSEASASASKDALQAMILSLPRYHCENPASCKSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGLSRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSSMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCNPEVVQQFHNPDTIFILAFAIILLNTDMYSPNIKPDRKMMLEDFIRNLRGVDDGADIPRELVVGIYERIQQKELKSNEDHVTYVTKVEKSIVGMKTVLSVPHRRLVCCSRLFEVTDVNKLQKQAAHQREVFLFNDLLVILKLCPKKKSSSTYTFCKSVGLLGMQFQLFENEYYSHGITLVTPLSGSEKKQVLHFCALGSDEMQKFVEDLKESIAEVTELEQIRIEWELEKQQGTKTLSFKPCGAQGDPQSKQGSPTAKREAALRERPAESTVEVSIHNRLQTSQHNSGLGAERGAPVPPPDLQPSPPRQQTPPLPPPPPTPPGTLVQCQQIVKVIVLDKPCLARMEPLLSQALSCYTSSSSDSCGSTPLGGPGSPVKVTHQPPLPPPPPPYNHPHQFCPPGSLLHGHRYSSGSRSLV", "length": 1182 }, "evidence": [ { "id": "F1SK81", "url": "https://omabrowser.org/oma/group/F1SK81/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ], "pmid": "" }, { "name": "postsynaptic density membrane", "id": "GO:0098839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098839", "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of ARF protein signal transduction", "id": "GO:0032012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032012", "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ], "pmid": "" }, { "name": "regulation of postsynaptic neurotransmitter receptor internalization", "id": "GO:0099149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099149", "evidence": [ { "database": "UniProtKB", "id": "F1SK81", "url": "https://www.uniprot.org/uniprotkb/F1SK81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 193, "end_pos": 195, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SK81-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 900, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SK81-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SK81" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK81" }, { "id": "PS50190", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50190" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SEC7", "eco_id": "ECO_0000259", "start_pos": 356, "end_pos": 549, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 165, 803 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 193, "end_pos": 195 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMW1-1", "uniprot_ac": "F1SMW1", "uniprot_id": "F1SMW1_PIG", "mass": { "chemical_mass": 180779.0, "monoisotopic_mass": 180779.0 }, "refseq": {}, "gene_names": [ { "name": "PHLPP1", "type": "recommended", "evidence": [ { "id": "F1SMW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ] } ], "protein_names": [ { "name": "protein-serine/threonine phosphatase", "type": "recommended", "evidence": [ { "id": "F1SMW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW1/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.16", "type": "synonym", "evidence": [ { "id": "F1SMW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW1/entry#names_and_taxonomy" } ] }, { "name": "Pleckstrin homology domain-containing family E member 1", "type": "synonym", "evidence": [ { "id": "F1SMW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW1/entry#names_and_taxonomy" } ] }, { "name": "Suprachiasmatic nucleus circadian oscillatory protein", "type": "synonym", "evidence": [ { "id": "F1SMW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PHLPP1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1", "locus": { "chromosome": "1", "start_pos": 158642818, "end_pos": 158862106, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004896", "url": "https://www.ensembl.org/id/ENSSSCG00000004896" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004896", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004896", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00143", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00143", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13322", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13322", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17240", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17240", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00481", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00481", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "20629", "url": "https://www.rhea-db.org/rhea/20629", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47004", "url": "https://www.rhea-db.org/rhea/47004", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QMV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMW1-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPAAAATAQRLPETSREDQAPAAAAAAAAAAGAGGGRSTEPALTLAAPSGGARDEAPGEAQPGPLPSRAGGTGRRRRRGAPQPTASGAAPVPGAGGGANSLLLRRGRLKRNLSAAAAASSSSSSSSSSSAAGLPASCSASASLCTRSLDRKTLLLKHRQMLQLQPSDRDWVRHQLQRGCVHVFDRHMASTYLRPVLCTLDTTAGEVAARLLQVGHKGGGVVKVLGKGPPDAGSRLPTAEPRDLGLQRGRNGLAAVGGSSRAPPADLPLPSARDGWESHASRASPAPSDSSPGEPGASRPLDCAATGRSSDTESFSLSPSAESVSDRLDPYSSGGGSSSSSEELEIDSAPALMGAPGQPRLPGRSAHPRHGAGARPPSPLVSPPPSQPKASRGVEGPVAAALDPPREENVVAAAALGRPQSTSGGDGATSEKAPPPPTLYVQLHGETTRRLEADEKPLQIQNDYLFQLGFGELWRVQEEGMDSEIGCLIRFYAGKPHSIGSSERIQLSGMYNVRKGKMQLPVNRWTRRQVILCGTCLIVSSVKDSLTGKMHVLPLIGGKVEEVKKHQHCLAFSSSGPQSQTYYICFDTFTEYLRWLRQVSKVASQRISSVDLSCCSLEHLPANLFYSQDLTHLNLKQNFLRQNPSLPTARGLSELQRFTKLKSLNLSNNHLGDFPLAVCNIPTLAELNVSCNALQTVPAAVGVMHNLQTFLLDGNFLQTLPAELENIHQLSYLGLSFNEFTDIPEVLEKLTAVDKLCMSGNCMETLRLQALRKMPHIKHVDLRLNLIRKLIADEVDFLPHVTQLDLRDNKLGDLDAMVFNNIEVLHCERNQLVTLNICGYFLKALYASSNELVQLDVYPVPNYLSYMDVSRNRLENVPEWVCEGRKLEVLDIGHNQICELPASLFCNSSLRKLLAGHNQLTRLPERLERTSVEVLDVQHNQLLELPPNLLMKADSLRFLNASANKLETLPPATLSEETNSILQELYLTNNNLTDKCVHLLTGHPRLKILHMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTIMNCRRMHTVIAHSNCIEVFPEVMQLPEIKCVDLSCNELSEVTLPENLPPKLQELDLTGNPRLALDHKTLELLNNIRCFKIDQPSAGDASGAPAVWSHGYTEASGVKNKLCVAALSVNNFCDNREALYGVFDGDRNVEVPYLLQCTMSDILAEELQKTKNEEEYMVNTFIVMQRKLGTAGQKLGGAAVLCHIKHDPVDPGGPFTLTSANVGKCQTVLCRNGKPLPLSRSYLMSSEEELKRIKRHKAIITEDGKVNGVTESTRILGYTFLHPSVVPRPHVQSVPLTPQDEFFILGSKGLWDSLSIEEAVGAVRNVPDALAAAKKLCTLAQSYGCHDSISAVVVQLSVTEDSFCCCELSAGGAPPPSPGIFPPSVSMVIKDRPADGLGVPSSSSGMASEISSELSTSEMSSEVGSTASDEPPGALAESGPAYPSEPRCTLHPVCLSNSFQRQLSSATFSSAFSDNGLDSDDEEPIEGVFSNGSRVEVEVDIHCGRAKEKQQHLLQVPAEASDEGIVISANEDESGLPRKADLATVGTMGRRRANGSVAPQERSHNVIEVATDAPLRKPGGYFAAPAQPDPDDQFIIPPELEEEVKEIMKHHQQQQPPPQLHLQQPQRQCPVDQLPDYCDTPL", "length": 1676, "header": "tr|F1SMW1-1|F1SMW1_PIG Isoform 1 of protein-serine/threonine phosphatase OS=Sus scrofa OX=9823 GN=PHLPP1 PE=4 SV=3 CANONICAL=F1SMW1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMV9-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1/entry#A0A5G2QMV9-1", "sequence": { "sequence": "MASTYLRPVLCTLDTPGEPGASRPLDCAATGRSSDTESFSLSPSAESVSDRLDPYSSGGGSSSSSEELEIDSAPALMGAPGQPRLPGRSAHPRHGAGARPPSPLVSPPPSQPKASRGVEGPVAAALDPPREENVVAAAALGRPQSTSGGDGATSEKAPPPPTLYVQLHGETTRRLEADEKPLQIQNDYLFQLGFGELWRVQEEGMDSEIGCLIRFYAGKPHSIGSSERIQLSGMYNVRKGKMQLPVNRWTRRQVILCGTCLIVSSVKDSLTGKMHVLPLIGGKVEEVKKHQHCLAFSSSGPQSQTYYICFDTFTEYLRWLRQVSKVASQRISSVDLSCCSLEHLPANLFYSQDLTHLNLKQNFLRQNPSLPTLKSLNLSNNHLGDFPLAVCNIPTLAELNVSCNALQTVPAAVGVMHNLQTFLLDGNFLQTLPAELENIHQLSYLGLSFNEFTDIPEVLEKLTAVDKLCMSGNCMETLRLQALRKMPHIKHVDLRLNLIRKLIADEVDFLPHVTQLDLRDNKLGDLDAMVFNNIEVLHCERNQLVTLNICGYFLKALYASSNELVQLDVYPVPNYLSYMDVSRNRLENVPEWVCEGRKLEVLDIVLQIHSLRKLLAGHNQLTRLPERLERTSVEVLDVQHNQLLELPPNLLMKADSLRFLNASANKLETLPPATLSEETNSILQELYLTNNNLTDKCVHLLTGHPRLKILHMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTIMNCRRMHTVIAHSNCIEVFPEVMQLPEIKCVDLSCNELSEVTLPENLPPKLQELDLTGNPRLALDHKTLDNIRCFKIDQPSAGDASGAPAVWSHGYTEASGVKNKLCVAALSVNNFCDNREALYGVFDGDRNVEVPYLLQCTMSDILAEELQKTKNEEEYMVNTFIVMQRKLGTAGQKLGGAAVLCHIKHDPVDPGGPFTLTSANVGKCQTVLCRNGKPLPLSRSYLMSSEEELKRIKRHKAIITEDGKVNGVTESTRILGYTFLHPSVVPRPHVQSVPLTPQDEFFILGSKGLWDSLSIEEAVGAVRNVPDALAAAKKLCTLAQSYGCHDSISAVVVQLSVTEDSFCCCELSAGGAPPPSPGIFPPSVSMVIKDRPADGLGVPSSSSGMASEISSELSTSEMSSEVGSTASDEPPGALAESGPAYPSEPRCTLHPVCLSNSFQRQLSSATFSSAFSDNGLDSDDEEPIEGVFSNGSRVEVEVDIHCGRAKEKQQHLLQVPAEASDEGIVISANEDESGLPRKADLATVGTMGRRRANGSVAPQERSHNVIEVATDAPLRKPGGYFAAPAQPDPDDQFIIPPELEEEVKEIMKHHQQQNLYLRGLCTFFLPFLFPPSLLTFADTF", "length": 1373, "header": "tr|A0A5G2QMV9-1|F1SMW1_PIG Computationally mapped isoform of protein-serine/threonine phosphatase OS=Sus scrofa OX=9823 GN=PHLPP1 PE=4 SV=2 CANONICAL=F1SMW1-1" }, "locus": { "chromosome": "1", "start_pos": 158861509, "end_pos": 158642955, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090801.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090801.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065383.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065383.2" } ] } }, { "isoform_ac": "F1SMW1-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1/entry#F1SMW1-1", "sequence": { "sequence": "MEPAAAATAQRLPETSREDQAPAAAAAAAAAAGAGGGRSTEPALTLAAPSGGARDEAPGEAQPGPLPSRAGGTGRRRRRGAPQPTASGAAPVPGAGGGANSLLLRRGRLKRNLSAAAAASSSSSSSSSSSAAGLPASCSASASLCTRSLDRKTLLLKHRQMLQLQPSDRDWVRHQLQRGCVHVFDRHMASTYLRPVLCTLDTTAGEVAARLLQVGHKGGGVVKVLGKGPPDAGSRLPTAEPRDLGLQRGRNGLAAVGGSSRAPPADLPLPSARDGWESHASRASPAPSDSSPGEPGASRPLDCAATGRSSDTESFSLSPSAESVSDRLDPYSSGGGSSSSSEELEIDSAPALMGAPGQPRLPGRSAHPRHGAGARPPSPLVSPPPSQPKASRGVEGPVAAALDPPREENVVAAAALGRPQSTSGGDGATSEKAPPPPTLYVQLHGETTRRLEADEKPLQIQNDYLFQLGFGELWRVQEEGMDSEIGCLIRFYAGKPHSIGSSERIQLSGMYNVRKGKMQLPVNRWTRRQVILCGTCLIVSSVKDSLTGKMHVLPLIGGKVEEVKKHQHCLAFSSSGPQSQTYYICFDTFTEYLRWLRQVSKVASQRISSVDLSCCSLEHLPANLFYSQDLTHLNLKQNFLRQNPSLPTARGLSELQRFTKLKSLNLSNNHLGDFPLAVCNIPTLAELNVSCNALQTVPAAVGVMHNLQTFLLDGNFLQTLPAELENIHQLSYLGLSFNEFTDIPEVLEKLTAVDKLCMSGNCMETLRLQALRKMPHIKHVDLRLNLIRKLIADEVDFLPHVTQLDLRDNKLGDLDAMVFNNIEVLHCERNQLVTLNICGYFLKALYASSNELVQLDVYPVPNYLSYMDVSRNRLENVPEWVCEGRKLEVLDIGHNQICELPASLFCNSSLRKLLAGHNQLTRLPERLERTSVEVLDVQHNQLLELPPNLLMKADSLRFLNASANKLETLPPATLSEETNSILQELYLTNNNLTDKCVHLLTGHPRLKILHMAYNRLQSFPASKMAKLEELEEIDISGNKLKAIPTTIMNCRRMHTVIAHSNCIEVFPEVMQLPEIKCVDLSCNELSEVTLPENLPPKLQELDLTGNPRLALDHKTLELLNNIRCFKIDQPSAGDASGAPAVWSHGYTEASGVKNKLCVAALSVNNFCDNREALYGVFDGDRNVEVPYLLQCTMSDILAEELQKTKNEEEYMVNTFIVMQRKLGTAGQKLGGAAVLCHIKHDPVDPGGPFTLTSANVGKCQTVLCRNGKPLPLSRSYLMSSEEELKRIKRHKAIITEDGKVNGVTESTRILGYTFLHPSVVPRPHVQSVPLTPQDEFFILGSKGLWDSLSIEEAVGAVRNVPDALAAAKKLCTLAQSYGCHDSISAVVVQLSVTEDSFCCCELSAGGAPPPSPGIFPPSVSMVIKDRPADGLGVPSSSSGMASEISSELSTSEMSSEVGSTASDEPPGALAESGPAYPSEPRCTLHPVCLSNSFQRQLSSATFSSAFSDNGLDSDDEEPIEGVFSNGSRVEVEVDIHCGRAKEKQQHLLQVPAEASDEGIVISANEDESGLPRKADLATVGTMGRRRANGSVAPQERSHNVIEVATDAPLRKPGGYFAAPAQPDPDDQFIIPPELEEEVKEIMKHHQQQQPPPQLHLQQPQRQCPVDQLPDYCDTPL", "length": 1676, "header": "tr|F1SMW1-1|F1SMW1_PIG Isoform 1 of protein-serine/threonine phosphatase OS=Sus scrofa OX=9823 GN=PHLPP1 PE=4 SV=3 CANONICAL=F1SMW1-1" }, "locus": { "chromosome": "1", "start_pos": 158862106, "end_pos": 158643824, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005402.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005402.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005267.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005267.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 85, "start_aa": "Thr", "end_pos": 85, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr85", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMV9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" }, { "name": "protein serine/threonine phosphatase activity", "id": "GO:0004722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004722", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" }, { "name": "regulation of p38MAPK cascade", "id": "GO:1900744", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900744", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" }, { "name": "regulation of T cell anergy", "id": "GO:0002667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002667", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" }, { "name": "regulation of apoptotic process", "id": "GO:0042981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042981", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" }, { "name": "negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction", "id": "GO:0051898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051898", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" }, { "name": "regulation of JNK cascade", "id": "GO:0046328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046328", "evidence": [ { "database": "UniProtKB", "id": "F1SMW1", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1525, "end_pos": 1527, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1588, "end_pos": 1590, "annotation": "n_glycosylation_sequon" }, { "start_pos": 665, "end_pos": 667, "annotation": "n_glycosylation_sequon" }, { "start_pos": 688, "end_pos": 690, "annotation": "n_glycosylation_sequon" }, { "start_pos": 907, "end_pos": 909, "annotation": "n_glycosylation_sequon" }, { "start_pos": 960, "end_pos": 962, "annotation": "n_glycosylation_sequon" }, { "start_pos": 991, "end_pos": 993, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20629", "name": "", "equation": "O-phospho-L-seryl-[protein] + H2O = L-seryl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20629", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20629" } ] }, { "id": "47004", "name": "", "equation": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47004", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47004" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 504, "end_pos": 604, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SMW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW1" }, { "id": "PS51746", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PPM-type phosphatase", "eco_id": "ECO_0000259", "start_pos": 1143, "end_pos": 1390, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 85 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 1525, "end_pos": 1527 }, { "start_pos": 1588, "end_pos": 1590 }, { "start_pos": 665, "end_pos": 667 }, { "start_pos": 688, "end_pos": 690 }, { "start_pos": 907, "end_pos": 909 }, { "start_pos": 960, "end_pos": 962 }, { "start_pos": 991, "end_pos": 993 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKP3-1", "uniprot_ac": "F1SKP3", "uniprot_id": "F1SKP3_PIG", "mass": { "chemical_mass": 58754.0, "monoisotopic_mass": 58754.0 }, "refseq": { "ac": "XP_003126103", "name": "brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126103" }, "gene_names": [ { "name": "BAIAP2L2", "type": "recommended", "evidence": [ { "id": "F1SKP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ] }, { "name": "BAIAP2L2", "type": "synonym", "evidence": [ { "id": "XP_003126103", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126103" } ] } ], "protein_names": [ { "name": "BAR/IMD domain-containing adapter protein 2-like 2", "type": "recommended", "evidence": [ { "id": "F1SKP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP3/entry#names_and_taxonomy" } ] }, { "name": "Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 2", "type": "synonym", "evidence": [ { "id": "F1SKP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP3/entry#names_and_taxonomy" } ] }, { "name": "Planar intestinal- and kidney-specific BAR domain protein", "type": "synonym", "evidence": [ { "id": "F1SKP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP3/entry#names_and_taxonomy" } ] }, { "name": "brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 2", "type": "synonym", "evidence": [ { "id": "XP_003126103", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126103" } ] } ], "function": [ { "annotation": "Phosphoinositides-binding protein that induces the formation of planar or gently curved membrane structures. Binds to phosphoinositides, including to phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) headgroups. There seems to be no clear preference for a specific phosphoinositide.", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3#function" }, { "database": "UniProtKB", "id": "ARBA00054355", "url": "https://www.uniprot.org/uniprotkb/ARBA00054355#function" }, { "database": "UniProtKB", "id": "A0A5G2QPD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BAIAP2L2", "url": "https://www.uniprot.org/uniprotkb/F1SKP3", "locus": { "chromosome": "5", "start_pos": 9799703, "end_pos": 9778727, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000111", "url": "https://www.ensembl.org/id/ENSSSCG00000000111" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000111", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000111", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07644", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07644", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11914", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11914", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515261", "url": "https://www.ncbi.nlm.nih.gov/gene/100515261", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515261", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515261", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QNLMEHF", "url": "https://omabrowser.org/oma/group/QNLMEHF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKP3", "url": "https://www.orthodb.org/?gene=F1SKP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14206:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14206:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08397", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08397", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14604", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14604", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9035034", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126103", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126103", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QPD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKP3-1", "url": "https://www.uniprot.org/uniprotkb/F1SKP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPEMDQFYRSTMAIYKSIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFNAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSRQHYEMEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESQRAAELEEKRRYRFLAEKHLLLSNTFLQFFGRARGMLQNRVLLWKEQSEASRSPSRAHSPGLLGPVLGPPYPSGRLTPTRLDMPQRPLGEFGSPRSRHGSGSYGPEPTEARSLPRTPSASSLYGSSTQRSRSNSFGERPGGGGGGGGARRVRALVSHSEGANHTLLRFSAGDVVEVLVPEAQNGWLYGKLEGSSTSGWFPEAYVKPLEELPMNPMKPLNPVTSMKPMNAVNPVASTNPVSPMNALPSRSYPLRGSQSLDDLLDRPGNSTAPSEYWDGQSRSRTPSGVPSRTPSPVPTPLPGSRRGSMGSMGAASDGKKLTSWEQQPPELFPRGTNPFATVKLRPTVTNDRSAPLIR", "length": 528, "header": "tr|F1SKP3-1|F1SKP3_PIG Isoform 1 of BAR/IMD domain-containing adapter protein 2-like 2 OS=Sus scrofa OX=9823 GN=BAIAP2L2 PE=1 SV=3 CANONICAL=F1SKP3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SKP3/entry#A0A5G2QPD0-1", "sequence": { "sequence": "MPLRWLLAAQSSMASIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFNAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSRQHYEMEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESQRAAELEEKRRYRFLAEKHLLLSNTFLQFFGRARGMLQNRVLLWKEQSEASRSPSRAHSPGLLGPVLGPPYPSGRLTPTRLDMPQRPLGEFGSPRSRHGSGSYGPEPTEARSLPRTPSASSLYGSSTQRSRSNSFGERPGGGGGGGGARRVRALVSHSEGANHTLLRFSAGDVVEVLVPEAQNGWLYGKLEGSSTSGWFPEAYVKPLEELPMNPMKPLNPVTSMKPMNAVNPVASTNPVSPMNALPSRSYPLRGSQSLDDLLDRPGNSTAPSEYWDGQSRSRTPSGVPSRTPSPVPTPLPGSRRGSMGSMGAASDGKVSPSPSPPSPLGGTNPFATVKLRPTVTNDRSAPLIR", "length": 522, "header": "tr|A0A5G2QPD0-1|F1SKP3_PIG Computationally mapped isoform of BAR/IMD domain-containing adapter protein 2-like 2 OS=Sus scrofa OX=9823 GN=BAIAP2L2 PE=1 SV=2 CANONICAL=F1SKP3-1" }, "locus": { "chromosome": "5", "start_pos": 9799287, "end_pos": 9779777, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087609.1", "url": "https://www.ensembl.org/id/ENSSSCT00000087609.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060142.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060142.1" } ] } }, { "isoform_ac": "F1SKP3-1", "url": "https://www.uniprot.org/uniprotkb/F1SKP3/entry#F1SKP3-1", "sequence": { "sequence": "MAPEMDQFYRSTMAIYKSIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFNAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSRQHYEMEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESQRAAELEEKRRYRFLAEKHLLLSNTFLQFFGRARGMLQNRVLLWKEQSEASRSPSRAHSPGLLGPVLGPPYPSGRLTPTRLDMPQRPLGEFGSPRSRHGSGSYGPEPTEARSLPRTPSASSLYGSSTQRSRSNSFGERPGGGGGGGGARRVRALVSHSEGANHTLLRFSAGDVVEVLVPEAQNGWLYGKLEGSSTSGWFPEAYVKPLEELPMNPMKPLNPVTSMKPMNAVNPVASTNPVSPMNALPSRSYPLRGSQSLDDLLDRPGNSTAPSEYWDGQSRSRTPSGVPSRTPSPVPTPLPGSRRGSMGSMGAASDGKKLTSWEQQPPELFPRGTNPFATVKLRPTVTNDRSAPLIR", "length": 528, "header": "tr|F1SKP3-1|F1SKP3_PIG Isoform 1 of BAR/IMD domain-containing adapter protein 2-like 2 OS=Sus scrofa OX=9823 GN=BAIAP2L2 PE=1 SV=3 CANONICAL=F1SKP3-1" }, "locus": { "chromosome": "5", "start_pos": 9799287, "end_pos": 9778827, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000117.3", "url": "https://www.ensembl.org/id/ENSSSCT00000000117.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000115.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000115.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 280, "start_aa": "Thr", "end_pos": 280, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr280", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPD0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPD0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515261", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515261", "resource": "KEGG Pathway" }, { "id": "R-SSC-9035034", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9035034", "resource": "Reactome", "description": "RHOF GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0M0Z8-1", "protein_name": "BAR/IMD domain containing adaptor protein 2 like 2", "gene_name": "Baiap2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLLGWWLSRDTEGHEVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAAELEEKRRYRFLAEKHLLLSNTFLQFLGRARGMLQNRVLLWKEQSEASRSPSRAHSPGLLGPALGPPYPSGRLTPTRLDMPPRPLGEYGSPRSRHGSGSYGPEPSEARSASQLEPDRRSLPRTPSASSLYASNTQRSRSNSFGERLGGGGARRVRALVSHSEGANHTLLRFSAGDVVEVLVPEAQNGWLYGKLEGSSASGWFPEAYVKPLEEMPMNPMNPVAPMNSMAPMSPMNELPSRSYPLRGSHSLDDLLDRPGNPAASSDYWDSQSRSRTPSRVPSRAPSPAPPPLPNRRSSVGSMGAATDVKGYQSLCHREAASHCHQRPLSTPHPLRRSSPLGPEVAQHTHPELFQPTAAAVDLRCQAPTQGTILTPLPQPRISLRLGLATWSRQKWVEAQSSWLFLGPKDSSRDPASCLPSSFCLCPDRKHPFSHLCPSCTPA", "length": 538 }, "evidence": [ { "id": "F1SKP3", "url": "https://omabrowser.org/oma/group/F1SKP3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BFE9-1", "protein_name": "BAR/IMD domain-containing adapter protein 2-like 2", "gene_name": "BAIAP2L2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPEMDQFYRSTMAIYKSILEQFNPALENLVYLGNNYLRAFHALSEAAEVYFNAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSRQHYEMEYRHRAANLEKSMSQLWRMERKRDKNAREMKESVNRLHAQMQAFVSESQRAAELEEKRRYRFLAEKHLLLSNTFLQFFGRARGMLQNRVLLWKEQSEASRSPSRAHSPGLLGPVLGPPYPSGRLTPTRLDMPQRALGEFGSPRSRHGSGSYGPEPAEARSASQLEPDHRRSLPRTPSASSLYSSSTQRSRSNSFGERPGGGGGGGGARRVRALVSHSEGANHTLLRFSAGDVVEVLVPEAQNGWLYGKLEGSSSSGWFPEAYVKPLDELPVNPMNPLNPVTSMNPRSPVNELPSRLRSYPLRGSHSLDDLLDRPGNSTASSDYWDGQSRSRTPSHIPSRTPSPAPTPLPSSRRSSMGSMGVASDVKKLASWEQQPPELFPRGTNPFATVKLRPTVTNDRSAPLIR", "length": 529 }, "evidence": [ { "id": "F1SKP3", "url": "https://omabrowser.org/oma/group/F1SKP3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NBU7-1", "protein_name": "BAR/IMD domain containing adaptor protein 2 like 2", "gene_name": "BAIAP2L2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDLSYRSTISIYKSILEQFNPALENLVYLGNNYLRAFHALSKAAEVYFKAVEKIGERALQSSTSHVLGEILMQMSDTQRLLSSDLEVVAQTFHVDLLQHMEKNSKMDVQFISESQKQYELEYRRKANNLEKCTTELWRMERARDKNVREMKENVMRLRSEMQAFLSNSQREAELEEKRRYRFLAEKHQMLYNTLLQFYSRARGMIQTKAPQWKEQLEASRNPSNSHVQGLLPSSHSQGYPSGRLTPTHLEMRPLGDFASSLAGSRSSIFSQEPSETRLSPQPEVPRRPLQRTPSASLLPAGRVSRSGSFGEASSSSEGRRRSGTVRVQAIAPHTTGANRTLLRFDPGDVITVLMPEAQNGWLYGKLEGSSTCGWFPEAYVKPLEDARDMEEPPVRSFPLRSSHSMDDILDHPSVSSSSWSAAAQAAVPNPPPPPVGASSHQSGSVTSGGSKKPGVFDQPPELFPRGTNPFATVKLRPTVTNDRSAPIIR", "length": 489 }, "evidence": [ { "id": "F1SKP3", "url": "https://omabrowser.org/oma/group/F1SKP3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6UXY1-1", "protein_name": "BAR/IMD domain-containing adapter protein 2-like 2", "gene_name": "BAIAP2L2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPEMDQFYRSTMAIYKSIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGERALQSPTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGGLLQHMEKNTKLDMQFIKDSRQHYELEYRHRAANLEKCMSELWRMERKRDKNVREMKESVNRLHAQMQAFVSESQRAAELEEKRRYRFLAEKHLLLSNTFLQFFGRARGMLQNRVLLWKEQSEASRSPSRAHSPGLLGPALGPPYPSGRLTPTCLDMPPRPLGEFSSPRSRHGSGSYGTEPDARPASQLEPDRRSLPRTPSASSLYSGSAQSSRSNSFGERPGGGGGARRVRALVSHSEGANHTLLRFSAGDVVEVLVPEAQNGWLYGKLEGSSASGWFPEAYVKALEEGPVNPMTPVTPMTSMTSMSPMTPMNPGNELPSRSYPLRGSHSLDDLLDRPGNSIAPSEYWDGQSRSRTPSRVPSRAPSPAPPPLPSSRRSSMGSTAVATDVKKLMSSEQYPPQELFPRGTNPFATVKLRPTITNDRSAPLIR", "length": 529 }, "evidence": [ { "id": "F1SKP3", "url": "https://omabrowser.org/oma/group/F1SKP3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80Y61-1", "protein_name": "BAR/IMD domain-containing adapter protein 2-like 2", "gene_name": "Baiap2l2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPEMDQFYRSTMAIYKSIMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFVSESKRAAELEEKRRYRFLAEKHLLLSNTFLQFLGRARGMLQNRVLLWKEQSEASRSPSRAHSPGLLGPALGPPYPSGRLTPTRLDMPPRPLGEYGSPRSRHGSGSYGPEPAEARSASQLEPDRRSLPRTPSASSLYASSTQRSRSNSFGERLGGGGARRVRALVSHSEGANHTLLRFSAGDVVEVLVPEAQNGWLYGKLEGSSASGWFPEAYVKPVEEIPVNPMNPVAPMNSMAPMSPMNELPSRSYPLRGSHSLDDLLDRPGNPTASSEYWDSQSRSRTPSRVPSRAPSPAPPPLPSSRRSSVGSMGAATDVKKLMSWEQNPPELFPRGTNPFATVKLRPTVTNDRSAPLIR", "length": 522 }, "evidence": [ { "id": "F1SKP3", "url": "https://omabrowser.org/oma/group/F1SKP3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "plasma membrane organization", "id": "GO:0007009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007009", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" }, { "name": "actin filament bundle assembly", "id": "GO:0051017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051017", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" }, { "name": "actin crosslink formation", "id": "GO:0051764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051764", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" }, { "name": "positive regulation of actin filament polymerization", "id": "GO:0030838", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030838", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phospholipid binding", "id": "GO:0005543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005543", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" }, { "name": "cell-cell contact zone", "id": "GO:0044291", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044291", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" }, { "name": "clathrin complex", "id": "GO:0071439", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071439", "evidence": [ { "database": "UniProtKB", "id": "F1SKP3", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 439, "end_pos": 441, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" }, { "id": "PS51338", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51338" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IMD", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 239, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP3" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 318, "end_pos": 381, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 280 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 334, "end_pos": 336 }, { "start_pos": 439, "end_pos": 441 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLC7-1", "uniprot_ac": "F1SLC7", "uniprot_id": "F1SLC7_PIG", "mass": { "chemical_mass": 25327.0, "monoisotopic_mass": 25327.0 }, "refseq": { "ac": "XP_003354830", "name": "max dimerization protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354830" }, "gene_names": [ { "name": "MXD1", "type": "recommended", "evidence": [ { "id": "F1SLC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ] }, { "name": "MXD1", "type": "synonym", "evidence": [ { "id": "XP_003354830", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354830" } ] } ], "protein_names": [ { "name": "MAX dimerization protein 1", "type": "synonym", "evidence": [ { "id": "F1SLC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLC7/entry#names_and_taxonomy" } ] }, { "name": "max dimerization protein 1", "type": "synonym", "evidence": [ { "id": "XP_003354830", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354830" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MXD1", "url": "https://www.uniprot.org/uniprotkb/F1SLC7", "locus": { "chromosome": "3", "start_pos": 72517837, "end_pos": 72545247, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008334", "url": "https://www.ensembl.org/id/ENSSSCG00000008334" } ] } } ], "crossref": [ { "id": "F1SLC7", "url": "https://alphafold.ebi.ac.uk/entry/F1SLC7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008334", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008334", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18931", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18931", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100625349", "url": "https://www.ncbi.nlm.nih.gov/gene/100625349", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625349", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625349", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SSTHNEM", "url": "https://omabrowser.org/oma/group/SSTHNEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLC7", "url": "https://www.orthodb.org/?gene=F1SLC7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11969", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11969", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11969:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11969:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003354830", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354830", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QPI9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLC7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAVRMNIQMLLEAADYLERREREAEHGYASMLPYNNKDRDALKRRSKSKKNNSSSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRAIHQIDQLQREQRHLKRQLEKLGIERIRMDSTGSTVSSERSDSDREEIDVDVESTDYLTGDLDWSSSSVSDSDERGSMQSLGSDEGYSSSSIQRIKLQDNHQTCLGL", "length": 221, "header": "tr|F1SLC7-1|F1SLC7_PIG Isoform 1 of MAX dimerization protein 1 OS=Sus scrofa OX=9823 GN=MXD1 PE=4 SV=2 CANONICAL=F1SLC7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPI9-1", "url": "https://www.uniprot.org/uniprotkb/F1SLC7/entry#A0A5G2QPI9-1", "sequence": { "sequence": "MAAAVRMNIQMLLEAADYLERREREAEHGYASMLPYNNKDRDALKRRSKSKKNNSSSRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRAIHQIDQLQREQRHLKRQLEKLGIERIRMDSTGSTVSSERSDSDREEIDVDVESTDYLTGDLDWSSSSVSDSDERGSMQSLGSDEGYSSSSIQRIKLQDNHQTCLGL", "length": 211, "header": "tr|A0A5G2QPI9-1|F1SLC7_PIG Computationally mapped isoform of MAX dimerization protein 1 OS=Sus scrofa OX=9823 GN=MXD1 PE=4 SV=1 CANONICAL=F1SLC7-1" }, "locus": { "chromosome": "3", "start_pos": 72545054, "end_pos": 72522633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068336.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068336.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065981.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065981.1" } ] } }, { "isoform_ac": "F1SLC7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLC7/entry#F1SLC7-1", "sequence": { "sequence": "MAAAVRMNIQMLLEAADYLERREREAEHGYASMLPYNNKDRDALKRRSKSKKNNSSSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRRAIHQIDQLQREQRHLKRQLEKLGIERIRMDSTGSTVSSERSDSDREEIDVDVESTDYLTGDLDWSSSSVSDSDERGSMQSLGSDEGYSSSSIQRIKLQDNHQTCLGL", "length": 221, "header": "tr|F1SLC7-1|F1SLC7_PIG Isoform 1 of MAX dimerization protein 1 OS=Sus scrofa OX=9823 GN=MXD1 PE=4 SV=2 CANONICAL=F1SLC7-1" }, "locus": { "chromosome": "3", "start_pos": 72545054, "end_pos": 72522633, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009126.3", "url": "https://www.ensembl.org/id/ENSSSCT00000009126.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008896.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008896.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPI9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPI9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625349", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625349", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2BFZ1-1", "protein_name": "Max dimerization protein 1", "gene_name": "mxd1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTAIEKLQMLIEAAEYLDRREREAEHGYASMLPFTSNKERDGLKRKIKSKKNCSSRSTHNEMEKNRRAHLRLCLERLKSLVPLGPESNRHTTLSLLMRAKEHIKRLEDSERKAQHTIDQLQREQRHLRRRLEQLGVERTRMDSMGSTISSDKSDSDQEEVDVDVEGTDYLLGDLEWSTSSVSDSDERGSLRSSCSDEGYSSASLRRLANSQENSLVLACSL", "length": 221 }, "evidence": [ { "id": "F1SLC7", "url": "https://omabrowser.org/oma/group/F1SLC7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1B8Z7-1", "protein_name": "MAX dimerization protein 1", "gene_name": "MXD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAVRMNIQMLLEAADYLERREREAEHGYASMLPYNNKDRDALKRRSKSKKNNSSSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESNRHTTLSLLTKAKLHIKKLEDCDRKAIHQIDQLQREQRHLKRQLEKLGIERIRMDSTGSTVSSERSDSDREEIDVDVESTDYLTGDLDWSCSSVSDSDERGSMQSLGSDEGYSSSSVKRIKLQDSHKTTCLGL", "length": 222 }, "evidence": [ { "id": "F1SLC7", "url": "https://omabrowser.org/oma/group/F1SLC7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1LRY0-1", "protein_name": "Max dimerization protein 1", "gene_name": "Mxd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATAVGMNIQLLLEAADYLERREREAEHGYASMLPYSSKDRDAFKRRNKPKKNSTSSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRRLEKLGAERTRMDSVGSVVSSERSDSDREELDVDVDVDVDVDVDVDVESTDYLNGDLGWSSSVSDSDERGSMQSLGSDEGYSSASVKRAKLQDGHKAGPGL", "length": 232 }, "evidence": [ { "id": "F1SLC7", "url": "https://omabrowser.org/oma/group/F1SLC7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q05195-1", "protein_name": "Max dimerization protein 1", "gene_name": "MXD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAVRMNIQMLLEAADYLERREREAEHGYASMLPYNNKDRDALKRRNKSKKNNSSSRSTHNEMEKNRRAHLRLCLEKLKGLVPLGPESSRHTTLSLLTKAKLHIKKLEDCDRKAVHQIDQLQREQRHLKRQLEKLGIERIRMDSIGSTVSSERSDSDREEIDVDVESTDYLTGDLDWSSSSVSDSDERGSMQSLGSDEGYSSTSIKRIKLQDSHKACLGL", "length": 221 }, "evidence": [ { "id": "F1SLC7", "url": "https://omabrowser.org/oma/group/F1SLC7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" }, { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SLC7", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLC7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 221, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLC7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLC7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLC7" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 108, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 53, "end_pos": 55 }, { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFJ2-1", "uniprot_ac": "F1SFJ2", "uniprot_id": "F1SFJ2_PIG", "mass": { "chemical_mass": 84060.0, "monoisotopic_mass": 84060.0 }, "refseq": { "ac": "XP_020948582", "name": "transcription factor SOX-5 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948582" }, "gene_names": [ { "name": "SOX5", "type": "recommended", "evidence": [ { "id": "F1SFJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ] }, { "name": "SOX5", "type": "synonym", "evidence": [ { "id": "XP_020948582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948582" } ] } ], "protein_names": [ { "name": "SRY-box transcription factor 5", "type": "synonym", "evidence": [ { "id": "F1SFJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2/entry#names_and_taxonomy" } ] }, { "name": "transcription factor SOX-5 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020948582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948582" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SOX5", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2", "locus": { "chromosome": "5", "start_pos": 50161558, "end_pos": 49504551, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000567", "url": "https://www.ensembl.org/id/ENSSSCG00000000567" } ] } } ], "crossref": [ { "id": "F1SFJ2", "url": "https://alphafold.ebi.ac.uk/entry/F1SFJ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000567", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000567", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22042", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627965", "url": "https://www.ncbi.nlm.nih.gov/gene/100627965", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45789", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45789", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45789:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45789:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948582", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ61-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R039", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R039", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R039-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R039-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3G2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3G2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3G2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFJ1", "url": "https://www.uniprot.org/uniprotkb/F1SFJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SFJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFJ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPASLASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDYGSDSENHIAGQAN", "length": 763, "header": "tr|F1SFJ2-1|F1SFJ2_PIG Isoform 1 of SRY-box transcription factor 5 OS=Sus scrofa OX=9823 GN=SOX5 PE=4 SV=4 CANONICAL=F1SFJ2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQ61-1", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2/entry#A0A5G2QQ61-1", "sequence": { "sequence": "MSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDYGSDSENHIAGQAN", "length": 642, "header": "tr|A0A5G2QQ61-1|F1SFJ2_PIG Computationally mapped isoform of SRY-box transcription factor 5 OS=Sus scrofa OX=9823 GN=SOX5 PE=4 SV=1 CANONICAL=F1SFJ2-1" }, "locus": { "chromosome": "5", "start_pos": 50161025, "end_pos": 49813302, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087945.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087945.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060423.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060423.1" } ] } }, { "isoform_ac": "A0A5G2R039-1", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2/entry#A0A5G2R039-1", "sequence": { "sequence": "MYSGIQNQQRQLPLWNYILAGREIKKMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQVSEN", "length": 229, "header": "tr|A0A5G2R039-1|F1SFJ2_PIG Computationally mapped isoform of SRY-box transcription factor 5 OS=Sus scrofa OX=9823 GN=SOX5 PE=4 SV=2 CANONICAL=F1SFJ2-1" }, "locus": { "chromosome": "5", "start_pos": 49953584, "end_pos": 49704729, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072220.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072220.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069755.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069755.2" } ] } }, { "isoform_ac": "A0A5G2R3G2-1", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2/entry#A0A5G2R3G2-1", "sequence": { "sequence": "MSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPASLASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDYGSDSENHIAGQAN", "length": 715, "header": "tr|A0A5G2R3G2-1|F1SFJ2_PIG Computationally mapped isoform of SRY-box transcription factor 5 OS=Sus scrofa OX=9823 GN=SOX5 PE=4 SV=1 CANONICAL=F1SFJ2-1" }, "locus": { "chromosome": "5", "start_pos": 50161025, "end_pos": 49813302, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071491.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071491.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065084.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065084.1" } ] } }, { "isoform_ac": "F1SFJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2/entry#F1SFJ1-1", "sequence": { "sequence": "VSVMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPASLASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDYGSDSENHIAGQAN", "length": 753, "header": "tr|F1SFJ1-1|F1SFJ2_PIG Computationally mapped isoform of SRY-box transcription factor 5 OS=Sus scrofa OX=9823 GN=SOX5 PE=4 SV=4 CANONICAL=F1SFJ2-1" }, "locus": { "chromosome": "5", "start_pos": 50161025, "end_pos": 49756741, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000610.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000610.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000596.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000596.4" } ] } }, { "isoform_ac": "F1SFJ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2/entry#F1SFJ2-1", "sequence": { "sequence": "MLTDPDLPQEFERMSSKRPASPYGEADGEVAMVTSRQKVEEEESDGLPAFHLPLHVSFPNKPHSEEFQPVSLLTQETCGHRTPTSQHNTMEVDGNKVMSSFAPHNSSTSPQKAEEGGRQSGESLSSTALGTPERRKGSLADVVDTLKQRKMEELIKNEPEETPSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMELAKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLLPPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQLYAAQLAAMQVSPGGKLPGIPQGNLGAAVSPTSIHTDKSTNSPPPKSKDEVAQPLNLSAKPKTSDGKSPTSPTSPHMPALRINSGAGPLKASVPASLASPSARVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQVLDGKVAVVNSLGLNNCRTEKEKTTLESLTQQLAVKQNEEGKFSHAMMDFNMSGDSDGSAGVSESRIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYFNVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEPHIKEEIQAEDINGEIYDEYDEEEDDPDVDYGSDSENHIAGQAN", "length": 763, "header": "tr|F1SFJ2-1|F1SFJ2_PIG Isoform 1 of SRY-box transcription factor 5 OS=Sus scrofa OX=9823 GN=SOX5 PE=4 SV=4 CANONICAL=F1SFJ2-1" }, "locus": { "chromosome": "5", "start_pos": 50161025, "end_pos": 49758021, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000609.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000609.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000595.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000595.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 330, "start_aa": "Thr", "end_pos": 330, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr330", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQ61", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ61" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "positive regulation of chondrocyte differentiation", "id": "GO:0032332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032332", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "cellular response to transforming growth factor beta stimulus", "id": "GO:0071560", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071560", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "asymmetric neuroblast division", "id": "GO:0055059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055059", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "positive regulation of mesenchymal stem cell differentiation", "id": "GO:2000741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000741", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "cell fate commitment", "id": "GO:0045165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045165", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SFJ2", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 526, "end_pos": 528, "annotation": "n_glycosylation_sequon" }, { "start_pos": 585, "end_pos": 587, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFJ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 763, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFJ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFJ2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFJ2" }, { "id": "PS50118", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMG box", "eco_id": "ECO_0000259", "start_pos": 556, "end_pos": 624, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 330 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 }, { "start_pos": 396, "end_pos": 398 }, { "start_pos": 526, "end_pos": 528 }, { "start_pos": 585, "end_pos": 587 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ16-1", "uniprot_ac": "F1SQ16", "uniprot_id": "F1SQ16_PIG", "mass": { "chemical_mass": 377536.0, "monoisotopic_mass": 377536.0 }, "refseq": {}, "gene_names": [ { "name": "GOLGB1", "type": "recommended", "evidence": [ { "id": "F1SQ16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ16" } ] } ], "protein_names": [ { "name": "Golgin B1", "type": "synonym", "evidence": [ { "id": "F1SQ16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ16/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ16", "url": "https://www.uniprot.org/uniprotkb/F1SQ16" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GOLGB1", "url": "https://www.uniprot.org/uniprotkb/F1SQ16", "locus": { "chromosome": "13", "start_pos": 138847245, "end_pos": 138754789, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011882", "url": "https://www.ensembl.org/id/ENSSSCG00000011882" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011882", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011882", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR026202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18887", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18887", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18887:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18887:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-432722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807878", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QR43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPD6", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPD6-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ16", "url": "https://www.uniprot.org/uniprotkb/F1SQ16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ16-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSRLSGLANVVLHELSGDDTAENMRTSLEPELPQESDMEFNDRTQEDVLERLAYAEQLVVELKEIIRQKDAQLQQKDEVLQEERKAADNKIKKLKLHAKAKLTSLNKHIEEMKAQGGSVVSAESQSEEQLSKHDKSSTEEEMEVEKIKHKLQEKEALISSLQAQLTQAQAEQSTKSSAEMEEFFTMKKQLQEKEELISTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQADVETEMQQKLRVLQRKLEEHEEALLGRAQVVDLLQQELTAAEQRNQILSQQLQQMEAEHNTLRNTIEKERQESKILMEKMELEVAERKLSFHNLQEEMHHLLEQLEQAGQAQAELQSRYSALEQKHETEIEEKTSHILNLQKTEQELHSACDALKDQNSKLLQDKSEQAVRSAQTIQQLEDQLQQKSEEISQFLNKLPLEKLETASQTSSPDVSNEGTQAVTEESIAFLQKRVVELENEKGALLLNSTELEELKAENEKLSSQITLLEAQKRTSEADREVSEISMVDITRLNKSSCSAEESEPDVLENTFSQKHKELSVLLLEMKEAQEEIAFLKSQLQGKRAEGDPEVIDQKEMKQIESEGIPPVKMTVLLEDTGQHFPPVPDEESSLPITEKEEQMSTKYQHRTSEEIPLSDARMELKSAKQDDEDKAPSAVPAICQCHQDELERLKCQILELETNLHKAEEIHEKNLDEKAKEIGSLTQLIEEFKKNAENTNSAFTALSQERDQLLSQVKELSVVTELRSQVQQLEVNLAEAERQRRLDYENQTAHQNLLTEQIHSLSIETKSKDVKIEVLQNELDDVQVQFSEQTTLIKSLQSQLQKKESEVLEGAERVRDISNKVEELSQALSQKELEIATMDQLLLQKKKDVETLQQTIEEKDQQVTEISFSMTEKMVQLNEEKFSLGVEIKTLKEQLNLLSRAEESKKEQVEEDKEIVSGLKQNYDELTAGLISKEELQHELDLVKKESEQRKRKLQAALINRKELLQRVSRLEEELAKVKDEPRKEIPLNESERREMEEDKEGKEDVEKYVTSKCQEVERSLKQVISEKEVELEHVRKDLEEKAAAEEQLQAVVKQMNQNLQEKTSQIDLLQAEIIENQAVIHKLTTGTKDAGDGDSAAPVKEAVAISPLVAGSGEHWKPELEEKIADLEKEKEQLQKKLQEVLTSRKAILKKAQEKERHLREELKQQKDDFNHLQEQFDEQSKENKDIGDQLRQLQVQIRESMDRKLPGHGQQETGSPTQGLEEPLYKATEQQPAHPVSESDLCSDWPPRPGNTDVLQGNTAVIAQIKAQLKEIGAEKEELELKLSSTTGELTKKAEEVFQLQEQINKQDLEIQSLKAASHEAEAHAESLRQKLESSQLEIAGLEHLKELQPELDELQKLISKKEEEVKYLSGQLSEKEMALTKVQAEIRDQEDLMKALRTQLEMQAKEHDERLKQLQLELCEMKQKPDETGEETKAKQQIQRKLQAALISRKEALKENKGLQEELSLAREAIEHLTKSLADLENQVSAQNTEKDTFLGKLALLQEERDKLIAEMDRSLMENQSLNGSCESLKLALEGLTEDKENLVKEIESLKCSKIAESTEWQEKHKELQKEYEILLQSYENVSNEAERIQHVVETVRQEKQELYGKLRSLEANKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEVPPAGGIPKDSMEALLSSNSDMKEELERVKTEYKTLSKEFEVLMTEKDSLSKEVQDLKHQIEGNVSKQASQEATEKHGNQIDVVEKATQSVPEEADEQDSPSMSTRPENSESILFEDNAKPDVSENISLHDEINNYLQQIDQLKERITELEEDKQKDKEFNQTLENERDALLSQISAKDGDLKMLQEEVTKINLLNQQIQEELVRVTKLKETAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCVSELEEEKQQLVKEKTKVESEIRKEYMEKIQGAQKGPGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALERTVKALEFVQAESQKDLEITKENLAHAKEDRRKAETELASFKVLLDDTQSEAARVLADNLKLKKELQSNKESVKSQMKQKDEDLERRLEQVEEKHLKEKKNMQEKLDALRREKIHLEETFGEMQVTLTKKDKEVKQLQENLDSTVAQLAAFTKSMSSLQDDRDRVIDEAKKWERKFSDAIQTKEEEIRLKEENCSVLKDQLRQMSIHMEELKINISRLEHDKQTWESKAKTEVQLQQKVCDTLQGENKELLSQLEETRHLYHSSQGELAKLESEFKILRDQSTDLNNSLEKYKENKEHLEGIIKQQEADIQNCKFNYEQLETDLQASRQLTSRLHEEINMKEQKIISLLSDKEQAIQVAVAELHQQHDKEIKELENLLSQEEEENTVLEEENKKAVDKTNQLMESLKNMKKENMQQKAQLNSFVKSMSSLQDDRDRIVSDYQQLEERHLSVILEKDQLIQDAATENNKLKEEIRCLRSHMDDLNSENAKLDAELIQYREDLNQVIARKDCQQKQLLEAQLQQTKELKSEYTKLEEKLKESEEAKEELKRSSLALQEEKQGLSKEIESLKGSISQLKKQLTALQEEGTLGIFQAQLKVKEEEVQKLSTTLSSSQKRITELEEELVRVQKEAAKKVDEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLAVTKENKDLTAQIQSFGKSMSSLQNSRDHANEELEGLKRKYEASLKELAQLREEQGLSGREREVLVSKAAFPVHSTGDDSSPHLERLNQQLLSKDEQLLHLSSQLEDSYNQVQSFSRAMASLQNERDRLLNELEKFRKTEEGKQRSAAPPTTSPAEVQSLKKAMSSLQNDRDRLLKELKNLQQQYLQINQEITELRPLKAQLQEYQDKTKTFQIMQEELRQENLSWQHELHQLRMEKSSWEMHERRMKEQYLMAIADKDQQLSHLQNLMRELRSSSSQTETLKVQYQRQVSPETSTSLDGSQNLVYETERLRTQLNDSLKEIHQKELRIQQLNSKFSQLLEEKNTLSIQLCDTSQSLRENQQHYSNLFNHCALLEKQVQELQAVNEKGPPNIDVAPGAPQEKNGAHRKGDAEELREPQISFSEAQQQLCNTKQEMNELRKLLEDEREQRVAAETALSAAEEQIRRLEHGEWDSARSPIIGSCGSQEQALLIDLTGNSCRRTRSGAGWKRVLRSLCHSRTRVPLLAAIYFLMVHVLLVLCFTGHL", "length": 3271, "header": "tr|F1SQ16-1|F1SQ16_PIG Isoform 1 of Golgin B1 OS=Sus scrofa OX=9823 GN=GOLGB1 PE=1 SV=6 CANONICAL=F1SQ16-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR43-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ16/entry#A0A5G2QR43-1", "sequence": { "sequence": "MLSRLSGLANVVLHELSGDDTAENMRTSLEPELPQESDMEFNDRTQEDVLERLAYAEQLVVELKEIIRQKDAQLQQKDEVLQEERKAADNKIKKLKLHAKAKLTSLNKHIEEMKAQGGSVVSAESQSEEQLSKHDKSSTEEEMEVEKIKHKLQEKEALISSLQAQLTQAQAEQSTKSSAEMEEFFTMKKQLQEKEELISTLQTQLSQTQAEQAAQKLRVLQRKLEEHEEALLGRAQVVDLLQQELTAAEQRNQILSQQLQQMEAEHNTLRNTIEKERQESKILMEKMELEVAERKLSFHNLQEEMHHLLEQLEQAGQAQAELQSRYSALEQKHETEIEEKTSHILNLQKTEQELHSACDALKDQNSKLLQDKSEQAVRSAQTIQQLEDQLQQKSEEISQFLNKLPLEKLETASQTSSPDVSNEGTQAVTEESIAFLQKRVVELENEKGALLLNSTELEELKAENEKLSSQITLLEAQKRTSEADREVSEISMVDITRLNKSSCSAEESEPDVLENTFSQKHKELSVLLLEMKEAQEEIAFLKSQLQGKRAEGDPEVIDQKEMKQIESEGIPPVKMTVLLEDTGQHFPPVPDEESSLPITEKEEQMSTKYQHRTSEEIPLSDARMELKSAKQDDEDKAPSAVPAICQCHQDELERLKCQILELETNLHKAEEIHEKNLDEKAKEIGSLTQLIEEFKKNAENTNSAFTALSQERDQLLSQVKELSVVTELRSQVQQLEVNLAEAERQRRLDYENQTAHQNLLTEQIHSLSIETKSKDVKIEVLQNELDDVQVQFSEQTTLIKSLQSQLQKKESEVLEGAERVRDISNKVEELSQALSQKELEIATMDQLLLQKKKDVETLQQTIEEKDQQVTEISFSMTEKMVQLNEEKFSLGVEIKTLKEQLNLLSRAEESKKEQVEEDKEIVSGLKQNYDELTAGLISKEELQHELDLVKKESEQRKRKLQAALINRKELLQRVSRLEEELAKVKDEPRKEIPLNESERREMEEDKEGKEDVEKYVTSKCQEVERSLKQVISEKEVELEHVRKDLEEKAAAEEQLQAVVKQMNQNLQEKTSQIDLLQAEIIENQAVIHKLTTGTKDAGDGDSAAPVKEAVAISPLVAGSGEHWKPELEEKIADLEKEKEQLQKKLQEVLTSRKAILKKAQEKERHLREELKQQKDDFNHLQEQFDEQSKENKDIGDQLRQLQVQIRESMDRKLPGHGQQETGSPTQGLEEPLYKATEQQPAHPVSESDLCSDWPPRPGNTDVLQGNTAVIAQIKAQLKEIGAEKEELELKLSSTTGELTKKAEEVFQLQEQINKQDLEIQSLKAASHEAEAHAESLRQKLESSQLEIAGLEHLKELQPELDELQKLISKKEEEVKYLSGQLSEKEMALTKVQAEIRDQEDLMKALRTQLEMQAKEHDERLKQLQLELCEMKQKPDETGEETKAKQQIQRKLQAALISRKEALKENKGLQEELSLAREAIEHLTKSLADLENQVSAQNTEKDTFLGKLALLQEERDKLIAEMDRSLMENQSLNGSCESLKLALEGLTEDKENLVKEIESLKCSKIAESTEWQEKHKELQKEYEILLQSYENVSNEAERIQHVVETVRQEKQELYGKLRSLEANKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEVPPAGGIPKDSMEALLSSNSDMKEELERVKTEYKTLSKEFEVLMTEKDSLSKEVQDLKHQIEGNVSKQASQEATEKHGNQIDVVEKATQSVPEEADEQDSPSMSTRPENSESILFEDNAKPDVSENISLHDEINNYLQQIDQLKERITELEEDKQKDKEFNQTLENERDALLSQISAKDGDLKMLQEEVTKINLLNQQIQEELVRVTKLKETAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCVSELEEEKQQLVKEKTKVESEIRKEYMEKIQGAQKGPGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALERTVKALEFVQAESQKDLEITKENLAHAKEDRRKAETELASFKVLLDDTQSEAARVLADNLKLKKELQSNKESVKSQMKQKDEDLERRLEQVEEKHLKEKKNMQEKLDALRREKIHLEETFGEMQVTLTKKDKEVKQLQENLDSTVAQLAAFTKSMSSLQDDRDRVIDEAKKWERKFSDAIQTKEEEIRLKEENCSVLKDQLRQMSIHMEELKINISRLEHDKQTWESKAKTEVQLQQKVCDTLQGENKELLSQLEETRHLYHSSQGELAKLESEFKILRDQSTDLNNSLEKYKENKEHLEGIIKQQEADIQNCKFNYEQLETDLQASRQLTSRLHEEINMKEQKIISLLSDKEQAIQVAVAELHQQHDKEIKELENLLSQEEEENTVLEEENKKAVDKTNQLMESLKNMKKENMQQKAQLNSFVKSMSSLQDDRDRIVSDYQQLEERHLSVILEKDQLIQDAATENNKLKEEIRCLRSHMDDLNSENAKLDAELIQYREDLNQVIARKDCQQKQLLEAQLQQTKELKSEYTKLEEKLKESEEAKEELKRSSLALQEEKQGLSKEIESLKGSISQLKKQLTALQEEGTLGIFQAQLKVKEEEVQKLSTTLSSSQKRITELEEELVRVQKEAAKKVDEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLAVTKENKDLTAQIQSFGKSMSSLQNSRDHANEELEGLKRKYEASLKELAQLREEQGLSGREREVLVSKAAFPVHSTGDDSSPHLERLNQQLLSKDEQLLHLSSQLEDSYNQVQSFSRAMASLQNERDRLLNELEKFRKTEEGKQRSAAPPTTSPAEVQSLKKAMSSLQNDRDRLLKELKNLQQQYLQINQEITELRPLKAQLQEYQDKTKTFQIMQEELRQENLSWQHELHQLRMEKSSWEMHERRMKEQYLMAIADKDQQLSHLQNLMRELRSSSSQTETLKVQYQRQVSPETSTSLDGSQNLVYETERLRTQLNDSLKEIHQKELRIQQLNSKFSQLLEEKNTLSIQLCDTSQSLRENQQHYSNLFNHCALLEKQVQELQAGPPNIDVAPGAPQEKNGAHRKGDAEELREPQISFSEAQQQLCNTKQEMNELRKLLEDEREQRVAAETALSAAEEQIRRLEHGEWDSARSPIIGSCGSQEQALLIDLTGNSCRRTRSGAGWKRVLRSLCHSRTRVPLLAAIYFLMVHVLLVLCFTGHL", "length": 3226, "header": "tr|A0A5G2QR43-1|F1SQ16_PIG Computationally mapped isoform of Golgin B1 OS=Sus scrofa OX=9823 GN=GOLGB1 PE=1 SV=3 CANONICAL=F1SQ16-1" }, "locus": { "chromosome": "13", "start_pos": 138845992, "end_pos": 138771381, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070193.3", "url": "https://www.ensembl.org/id/ENSSSCT00000070193.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064521.3", "url": "https://www.ensembl.org/id/ENSSSCP00000064521.3" } ] } }, { "isoform_ac": "A0ABB5UPD6-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ16/entry#A0ABB5UPD6-1", "sequence": { "sequence": "MLSRLSGLANVVLHELSGDDTAENMRTSLEPELPQESDMEFNDRTQEDVLERLAYAEQLVVELKEIIRQKDAQLQQKDEVLQEERKAADNKIKKLKLHAKAKLTSLNKHIEEMKAQGGSVVSAESQSEEQLSKHDKSSTEEEMEVEKIKHKLQEKEALISSLQAQLTQAQAEQSTKSSAEMEEFFTMKKQLQEKEELISTLQTQLSQTQAEQAAQKLRVLQRKLEEHEEALLGRAQVVDLLQQELTAAEQRNQILSQQLQQMEAEHNTLRNTIEKERQESKILMEKMELEVAERKLSFHNLQEEMHHLLEQLEQAGQAQAELQSRYSALEQKHETEIEEKTSHILNLQKTEQELHSACDALKDQNSKLLQDKSEQAVRSAQTIQQLEDQLQQKSEEISQFLNKLPLEKLETASQTSSPDVSNEGTQAVTEESIAFLQKRVVELENEKGALLLNSTELEELKAENEKLSSQITLLEAQKRTSEADREVSEISMVDITRLNKSSCSAEESEPDVLENTFSQKHKELSVLLLEMKEAQEEIAFLKSQLQGKRAEGDPEVIDQKEMKQIESEGIPPVKMTVLLEDTGQHFPPVPDEESSLPITEKEEQMSTKYQHRTSEEIPLSDARMELKSAKQDDEDKAPSAVPAICQCHQDELERLKCQILELETNLHKAEEIHEKNLDEKAKEIGSLTQLIEEFKKNAENTNSAFTALSQERDQLLSQVKELSVVTELRSQVQQLEVNLAEAERQRRLDYENQTAHQNLLTEQIHSLSIETKSKDVKIEVLQNELDDVQVQFSEQTTLIKSLQSQLQKKESEVLEGAERVRDISNKVEELSQALSQKELEIATMDQLLLQKKKDVETLQQTIEEKDQQVTEISFSMTEKMVQLNEEKFSLGVEIKTLKEQLNLLSRAEESKKEQVEEDKEIVSGLKQNYDELTAGLISKEELQHELDLVKKESEQRKRKLQAALINRKELLQRVSRLEEELAKVKDEPRKEIPLNESERREMEEDKEGKEDVEKYVTSKCQEVERSLKQVISEKEVELEHVRKDLEEKAAAEEQLQAVVKQMNQNLQEKTSQIDLLQAEIIENQAVIHKLTTGTKDAGDGDSAAPVKEAVAISPLVAGSGEHWKPELEEKIADLEKEKEQLQKKLQEVLTSRKAILKKAQEKERHLREELKQQKDDFNHLQEQFDEQSKENKDIGDQLRQLQVQIRESMDRKLPGHGQQETGSPTQGLEEPLYKATEQQPAHPVSESDLCSDWPPRPGNTDVLQGNTAVIAQIKAQLKEIGAEKEELELKLSSTTGELTKKAEEVFQLQEQINKQDLEIQSLKAASHEAEAHAESLRQKLESSQLEIAGLEHLKELQPELDELQKLISKKEEEVKYLSGQLSEKEMALTKVQAEIRDQEDLMKALRTQLEMQAKEHDERLKQLQLELCEMKQKPDETGEETKAKQQIQRKLQAALISRKEALKENKGLQEELSLAREAIEHLTKSLADLENQVSAQNTEKDTFLGKLALLQEERDKLIAEMDRSLMENQSLNGSCESLKLALEGLTEDKENLVKEIESLKCSKIAESTEWQEKHKELQKEYEILLQSYENVSNEAERIQHVVETVRQEKQELYGKLRSLEANKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEVPPAGGIPKDSMEALLSSNSDMKEELERVKTEYKTLSKEFEVLMTEKDSLSKEVQDLKHQIEGNVSKQASQEATEKHGNQIDVVEKATQSVPEEADEQDSPSMSTRPENSESILFEDNAKPDVSENISLHDEINNYLQQIDQLKERITELEEDKQKDKEFNQTLENERDALLSQISAKDGDLKMLQEEVTKINLLNQQIQEELVRVTKLKETAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCVSELEEEKQQLVKEKTKVESEIRKEYMEKIQGAQKGPGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALERTVKALEFVQAESQKDLEITKENLAHAKEDRRKAETELASFKVLLDDTQSEAARVLADNLKLKKELQSNKESVKSQMKQKDEDLERRLEQVEEKHLKEKKNMQEKLDALRREKIHLEETFGEMQVTLTKKDKEVKQLQENLDSTVAQLAAFTKSMSSLQDDRDRVIDEAKKWERKFSDAIQTKEEEIRLKEENCSVLKDQLRQMSIHMEELKINISRLEHDKQTWESKAKTEVQLQQKVCDTLQGENKELLSQLEETRHLYHSSQGELAKLESEFKILRDQSTDLNNSLEKYKENKEHLEGIIKQQEADIQNCKFNYEQLETDLQASRQLTSRLHEEINMKEQKIISLLSDKEQAIQVAVAELHQQHDKEIKELENLLSQEEEENTVLEEENKKAVDKTNQLMESLKNMKKENMQQKAQLNSFVKSMSSLQDDRDRIVSDYQQLEERHLSVILEKDQLIQDAATENNKLKEEIRCLRSHMDDLNSENAKLDAELIQYREDLNQVIARKDCQQKQLLEAQLQQTKELKSEYTKLEEKLKESEEAKEELKRSSLALQEEKQGLSKEIESLKGSISQLKKQLTALQEEGTLGIFQAQLKVKEEEVQKLSTTLSSSQKRITELEEELVRVQKEAAKKVDEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLAVTKENKDLTAQIQSFGKSMSSLQNSRDHANEELEGLKRKYEASLKELAQLREEQGLSGREREVLVSKAAFPVHSTGDDSSPHLERLNQQLLSKDEQLLHLSSQLEDSYNQVQSFSRAMASLQNERDRLLNELEKFRKTEEGKQRSAAPPTTSPAEVQSLKKAMSSLQNDRDRLRYLMLLIAEPFEDSED", "length": 2876, "header": "tr|A0ABB5UPD6-1|A0ABB5UPD6_PIG Computationally mapped isoform of Golgin B1 OS=Sus scrofa OX=9823 GN=GOLGB1 PE=1 SV=1 CANONICAL=F1SQ16-1" }, "locus": { "chromosome": "13", "start_pos": 138827163, "end_pos": 138771381, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107667.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107667.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082061.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082061.1" } ] } }, { "isoform_ac": "F1SQ16-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ16/entry#F1SQ16-1", "sequence": { "sequence": "MLSRLSGLANVVLHELSGDDTAENMRTSLEPELPQESDMEFNDRTQEDVLERLAYAEQLVVELKEIIRQKDAQLQQKDEVLQEERKAADNKIKKLKLHAKAKLTSLNKHIEEMKAQGGSVVSAESQSEEQLSKHDKSSTEEEMEVEKIKHKLQEKEALISSLQAQLTQAQAEQSTKSSAEMEEFFTMKKQLQEKEELISTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQADVETEMQQKLRVLQRKLEEHEEALLGRAQVVDLLQQELTAAEQRNQILSQQLQQMEAEHNTLRNTIEKERQESKILMEKMELEVAERKLSFHNLQEEMHHLLEQLEQAGQAQAELQSRYSALEQKHETEIEEKTSHILNLQKTEQELHSACDALKDQNSKLLQDKSEQAVRSAQTIQQLEDQLQQKSEEISQFLNKLPLEKLETASQTSSPDVSNEGTQAVTEESIAFLQKRVVELENEKGALLLNSTELEELKAENEKLSSQITLLEAQKRTSEADREVSEISMVDITRLNKSSCSAEESEPDVLENTFSQKHKELSVLLLEMKEAQEEIAFLKSQLQGKRAEGDPEVIDQKEMKQIESEGIPPVKMTVLLEDTGQHFPPVPDEESSLPITEKEEQMSTKYQHRTSEEIPLSDARMELKSAKQDDEDKAPSAVPAICQCHQDELERLKCQILELETNLHKAEEIHEKNLDEKAKEIGSLTQLIEEFKKNAENTNSAFTALSQERDQLLSQVKELSVVTELRSQVQQLEVNLAEAERQRRLDYENQTAHQNLLTEQIHSLSIETKSKDVKIEVLQNELDDVQVQFSEQTTLIKSLQSQLQKKESEVLEGAERVRDISNKVEELSQALSQKELEIATMDQLLLQKKKDVETLQQTIEEKDQQVTEISFSMTEKMVQLNEEKFSLGVEIKTLKEQLNLLSRAEESKKEQVEEDKEIVSGLKQNYDELTAGLISKEELQHELDLVKKESEQRKRKLQAALINRKELLQRVSRLEEELAKVKDEPRKEIPLNESERREMEEDKEGKEDVEKYVTSKCQEVERSLKQVISEKEVELEHVRKDLEEKAAAEEQLQAVVKQMNQNLQEKTSQIDLLQAEIIENQAVIHKLTTGTKDAGDGDSAAPVKEAVAISPLVAGSGEHWKPELEEKIADLEKEKEQLQKKLQEVLTSRKAILKKAQEKERHLREELKQQKDDFNHLQEQFDEQSKENKDIGDQLRQLQVQIRESMDRKLPGHGQQETGSPTQGLEEPLYKATEQQPAHPVSESDLCSDWPPRPGNTDVLQGNTAVIAQIKAQLKEIGAEKEELELKLSSTTGELTKKAEEVFQLQEQINKQDLEIQSLKAASHEAEAHAESLRQKLESSQLEIAGLEHLKELQPELDELQKLISKKEEEVKYLSGQLSEKEMALTKVQAEIRDQEDLMKALRTQLEMQAKEHDERLKQLQLELCEMKQKPDETGEETKAKQQIQRKLQAALISRKEALKENKGLQEELSLAREAIEHLTKSLADLENQVSAQNTEKDTFLGKLALLQEERDKLIAEMDRSLMENQSLNGSCESLKLALEGLTEDKENLVKEIESLKCSKIAESTEWQEKHKELQKEYEILLQSYENVSNEAERIQHVVETVRQEKQELYGKLRSLEANKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEVPPAGGIPKDSMEALLSSNSDMKEELERVKTEYKTLSKEFEVLMTEKDSLSKEVQDLKHQIEGNVSKQASQEATEKHGNQIDVVEKATQSVPEEADEQDSPSMSTRPENSESILFEDNAKPDVSENISLHDEINNYLQQIDQLKERITELEEDKQKDKEFNQTLENERDALLSQISAKDGDLKMLQEEVTKINLLNQQIQEELVRVTKLKETAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCVSELEEEKQQLVKEKTKVESEIRKEYMEKIQGAQKGPGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALERTVKALEFVQAESQKDLEITKENLAHAKEDRRKAETELASFKVLLDDTQSEAARVLADNLKLKKELQSNKESVKSQMKQKDEDLERRLEQVEEKHLKEKKNMQEKLDALRREKIHLEETFGEMQVTLTKKDKEVKQLQENLDSTVAQLAAFTKSMSSLQDDRDRVIDEAKKWERKFSDAIQTKEEEIRLKEENCSVLKDQLRQMSIHMEELKINISRLEHDKQTWESKAKTEVQLQQKVCDTLQGENKELLSQLEETRHLYHSSQGELAKLESEFKILRDQSTDLNNSLEKYKENKEHLEGIIKQQEADIQNCKFNYEQLETDLQASRQLTSRLHEEINMKEQKIISLLSDKEQAIQVAVAELHQQHDKEIKELENLLSQEEEENTVLEEENKKAVDKTNQLMESLKNMKKENMQQKAQLNSFVKSMSSLQDDRDRIVSDYQQLEERHLSVILEKDQLIQDAATENNKLKEEIRCLRSHMDDLNSENAKLDAELIQYREDLNQVIARKDCQQKQLLEAQLQQTKELKSEYTKLEEKLKESEEAKEELKRSSLALQEEKQGLSKEIESLKGSISQLKKQLTALQEEGTLGIFQAQLKVKEEEVQKLSTTLSSSQKRITELEEELVRVQKEAAKKVDEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLAVTKENKDLTAQIQSFGKSMSSLQNSRDHANEELEGLKRKYEASLKELAQLREEQGLSGREREVLVSKAAFPVHSTGDDSSPHLERLNQQLLSKDEQLLHLSSQLEDSYNQVQSFSRAMASLQNERDRLLNELEKFRKTEEGKQRSAAPPTTSPAEVQSLKKAMSSLQNDRDRLLKELKNLQQQYLQINQEITELRPLKAQLQEYQDKTKTFQIMQEELRQENLSWQHELHQLRMEKSSWEMHERRMKEQYLMAIADKDQQLSHLQNLMRELRSSSSQTETLKVQYQRQVSPETSTSLDGSQNLVYETERLRTQLNDSLKEIHQKELRIQQLNSKFSQLLEEKNTLSIQLCDTSQSLRENQQHYSNLFNHCALLEKQVQELQAVNEKGPPNIDVAPGAPQEKNGAHRKGDAEELREPQISFSEAQQQLCNTKQEMNELRKLLEDEREQRVAAETALSAAEEQIRRLEHGEWDSARSPIIGSCGSQEQALLIDLTGNSCRRTRSGAGWKRVLRSLCHSRTRVPLLAAIYFLMVHVLLVLCFTGHL", "length": 3271, "header": "tr|F1SQ16-1|F1SQ16_PIG Isoform 1 of Golgin B1 OS=Sus scrofa OX=9823 GN=GOLGB1 PE=1 SV=6 CANONICAL=F1SQ16-1" }, "locus": { "chromosome": "13", "start_pos": 138845992, "end_pos": 138771381, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012998.6", "url": "https://www.ensembl.org/id/ENSSSCT00000012998.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012656.6", "url": "https://www.ensembl.org/id/ENSSSCP00000012656.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QR43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-432722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432722", "resource": "Reactome", "description": "Golgi Associated Vesicle Biogenesis" }, { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SQ16", "url": "https://www.uniprot.org/uniprotkb/F1SQ16" } ], "pmid": "" }, { "name": "cis-Golgi network", "id": "GO:0005801", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005801", "evidence": [ { "database": "UniProtKB", "id": "F1SQ16", "url": "https://www.uniprot.org/uniprotkb/F1SQ16" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "F1SQ16", "url": "https://www.uniprot.org/uniprotkb/F1SQ16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1036, "end_pos": 1038, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1569, "end_pos": 1571, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1573, "end_pos": 1575, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1631, "end_pos": 1633, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1773, "end_pos": 1775, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1835, "end_pos": 1837, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1870, "end_pos": 1872, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1941, "end_pos": 1943, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2010, "end_pos": 2012, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2239, "end_pos": 2241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2260, "end_pos": 2262, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2332, "end_pos": 2334, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2703, "end_pos": 2705, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2950, "end_pos": 2952, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3043, "end_pos": 3045, "annotation": "n_glycosylation_sequon" }, { "start_pos": 494, "end_pos": 496, "annotation": "n_glycosylation_sequon" }, { "start_pos": 540, "end_pos": 542, "annotation": "n_glycosylation_sequon" }, { "start_pos": 793, "end_pos": 795, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1036, "end_pos": 1038 }, { "start_pos": 1569, "end_pos": 1571 }, { "start_pos": 1573, "end_pos": 1575 }, { "start_pos": 1631, "end_pos": 1633 }, { "start_pos": 1773, "end_pos": 1775 }, { "start_pos": 1835, "end_pos": 1837 }, { "start_pos": 1870, "end_pos": 1872 }, { "start_pos": 1941, "end_pos": 1943 }, { "start_pos": 2010, "end_pos": 2012 }, { "start_pos": 2239, "end_pos": 2241 }, { "start_pos": 2260, "end_pos": 2262 }, { "start_pos": 2332, "end_pos": 2334 }, { "start_pos": 2703, "end_pos": 2705 }, { "start_pos": 2950, "end_pos": 2952 }, { "start_pos": 3043, "end_pos": 3045 }, { "start_pos": 494, "end_pos": 496 }, { "start_pos": 540, "end_pos": 542 }, { "start_pos": 793, "end_pos": 795 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP04-1", "uniprot_ac": "F1SP04", "uniprot_id": "F1SP04_PIG", "mass": { "chemical_mass": 109263.0, "monoisotopic_mass": 109263.0 }, "refseq": {}, "gene_names": [ { "name": "RAI14", "type": "recommended", "evidence": [ { "id": "F1SP04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP04" } ] } ], "protein_names": [ { "name": "Retinoic acid induced 14", "type": "synonym", "evidence": [ { "id": "F1SP04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP04/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP04", "url": "https://www.uniprot.org/uniprotkb/F1SP04" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAI14", "url": "https://www.uniprot.org/uniprotkb/F1SP04", "locus": { "chromosome": "16", "start_pos": 20435845, "end_pos": 20268793, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016824", "url": "https://www.ensembl.org/id/ENSSSCG00000016824" } ] } } ], "crossref": [ { "id": "F1SP04", "url": "https://alphafold.ebi.ac.uk/entry/F1SP04", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016824", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016824", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042420", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042420", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24129:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24129:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QRR7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHB3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKP2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKP2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKP2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP04", "url": "https://www.uniprot.org/uniprotkb/F1SP04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP04-1", "url": "https://www.uniprot.org/uniprotkb/F1SP04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSLKAKFRKSDTNEWNKNDDRLLQAVEHGDAEKVASLLGKKGASATKHDSEGKTAFHLAATKGHVECLRVMVTHGVDVTAQDTAGHSALHLAAKNSHHECVKKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQVLCEHKSPINLKDLDGNIPLLLAVQNSHSEVCRFLLDHGADVNSRDKNGRTALMLACEIGSSNIVEALITKGADLSLVDSLGHNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQELLVLLQAKVASLTLHNKELQDKLQAKAPREAEADLSFDSYHSTHTDLTPSLGKPRETSPPDSKSSPSVLPHPSSQSSLDGDVRIQQLQEVLQDLQKRLENSEAERRQLEAELQARRTEPVCVNNAEISENGSDLSQKLKETQSKYEEAMKEVLSVQKQMKLGLVSLESVDSYSHLRERRIPEKEIEVLKRDLRCALEESERHQEKVRELEEKLVEREKGAMKPPAEEVEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIAKLKDTLKSQTSPEAGDEAGDMREAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEEVTAEYIHKAEHEKLMHETRLSGAKAEEALSEMKSQYAKVLTELTQLKQLVDAQKDNSVSITEHLQVVTALRTAAKEMEGKISSLQEHLASKEGDVAKLEKQLLEEKAAVIDAMVPRSAYEKLQSSWESEVSVLSSKLKESVKEKEKAHSEVAQLKSEVSQMKKDKENVQALLKSKEQEVSELGKFQHAQEELVEMKRHSESSSKMDEDKDKKINEMSKEVIKLKEALNSLSQLSYSASSSKRQSQQLEVLQQQVKQLQNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILTMCKNQSQKK", "length": 978, "header": "tr|F1SP04-1|F1SP04_PIG Isoform 1 of Retinoic acid induced 14 OS=Sus scrofa OX=9823 GN=RAI14 PE=1 SV=3 CANONICAL=F1SP04-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SP04/entry#A0A5G2QRR7-1", "sequence": { "sequence": "MKSLKAKFRKSDTNEWNKNDDRLLQAVEHGDAEKVASLLGKKGASATKHDSEGKTAFHLAATKGHVECLRVMVTHGVDVTAQDTAGHSALHLAAKNSHHECVKKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQVLCEHKSPINLKDLDGNIPLLLAVQNSHSEVCRFLLDHGADVNSRDKNGRTALMLACEIGSSNIVEALITKGADLSLVDSLGHNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQELLVLLQAKVASLTLHNKELQDKLQAKAPREAEADLSFDSYHSTHTDLTPSLGKPRETSPPDSKSSPSVLPHPSSQSSLDGDVRIQQLQEVLQDLQKRLENSEAERRQLEAELQARRTEPVCVNNAEISENGSDLSQKLKETQSKYEEAMKEVLSVQKQMKLGLVSLESVDSYSHLRERRIPEKEIEVLKRDLRCALEESERHQEKVRELEEKLVEREKVAMKPPAEEVEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIAKLKDTLKSQTSPEAGDEAGDMREAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEEVTAEYIHKAEHEKLMHETRLSGAKAEEALSEMKSQYAKVLTELTQLKQLVDAQKDNSVSITEHLQVVTALRTAAKEMEGKISSLQEHLASKEGDVAKLEKQLLEEKAAVIDAMVPRSAYEKLQSSWESEVSVLSSKLKESVKEKEKAHSEVAQLKSEVSQMKKDKENVQALLKSKEQEVSELGKFQHAQEELVEMKRHSESSSKMDEDKDKKINEMSKEVIKLKEALNSLSQLSYSASSSKRQSQQLEVLQQQVKQLQNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILTMCKNQSQKK", "length": 949, "header": "tr|A0A5G2QRR7-1|F1SP04_PIG Computationally mapped isoform of Retinoic acid induced 14 OS=Sus scrofa OX=9823 GN=RAI14 PE=1 SV=1 CANONICAL=F1SP04-1" }, "locus": { "chromosome": "16", "start_pos": 20434122, "end_pos": 20297242, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070420.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070420.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064722.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064722.1" } ] } }, { "isoform_ac": "A0A8W4FHB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SP04/entry#A0A8W4FHB3-1", "sequence": { "sequence": "DTPLSTNEWNKNDDRLLQAVEHGDAEKVASLLGKKGASATKHDSEGKTGSFARHSALHLAAKNSHHECVKKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQVLCEHKSPINLKDLDGNIPLLLAVQNSHSEVCRFLLDHGADVNSRDKNGRTALMLACEIGSSNIVEALITKGADLSLVDSLGHNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQELLVLLQAKVASLTLHNKELQDKLQAKAPREAEADLSFDSYHSTHTDLTPSLGKPRETSPPDSKSSPSVLPHPSSQSSLDGDVRIQQLQEVLQDLQKRLENSEAERRQLEAELQARRTEPVCVNNAEISENGSDLSQKLKETQSKYEEAMKEVLSVQKQMKLGLVSLESVDSYSHLRERRIPEKEIEVLKRDLRCALEESERHQEKVRELEEKLVEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIAKLKDTLKSQTSPEAGDEAGDMREAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEEVTAEYIHKAEHEKLMHETRLSGAKAEEALSEMKSQYAKVLTELTQLKQLVDAQKDNSVSITEHLQVVTALRTAAKEMEGKISSLQEHLASKEGDVAKLEKQLLEEKAAVIDAMVPRSAYEKLQSSWESEVSVLSSKLKESVKEKEKAHSEVAQLKSEVSQMKKDKENVQALLKSKEQEEELVEMKRHSESSSKMDEDKDKKINEMSKEVIKLKEALNSLSQLSYSASSSKRQSQQLEVLQQQVKQLQNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILTMCKNQSQKK", "length": 891, "header": "tr|A0A8W4FHB3-1|F1SP04_PIG Computationally mapped isoform of Retinoic acid induced 14 OS=Sus scrofa OX=9823 GN=RAI14 PE=1 SV=1 CANONICAL=F1SP04-1" }, "locus": { "chromosome": "16", "start_pos": 20434122, "end_pos": 20373213, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104265.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104265.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078627.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078627.1" } ] } }, { "isoform_ac": "A0A8W4FKP2-1", "url": "https://www.uniprot.org/uniprotkb/F1SP04/entry#A0A8W4FKP2-1", "sequence": { "sequence": "MEAQTNEWNKNDDRLLQAVEHGDAEKVASLLGKKGASATKHDSEGKTAFHLAATKGHVECLRVMVTHGVDVTAQDTAGHSALHLAAKNSHHECVKKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQVLCEHKSPINLKDLDGNIPLLLAVQNSHSEVCRFLLDHGADVNSRDKNGRTALMLACEIGSSNIVEALITKGADLSLVDSLGHNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQELLVLLQAKVASLTLHNKELQDKLQAKAPREAEADLSFDSYHSTHTDLTPSLGKPRETSPPDSKSSPSVLPHPSSQSSLDGDVRIQQLQEVLQDLQKRLENSEAERRQLEAELQARRTEPVCVNNAEISENGSDLSQKLKETQSKYEEAMKEVLSVQKQMKLGLVSLESVDSYSHLRERRIPEKEIEVLKRDLRCALEESERHQEKVRELEEKLVEREKVAMKPPAEEVEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIAKLKDTLKSQTSPEAGDEAGDMREAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEEVTAEYIHKAEHEKLMHETRLSGAKAEEALSEMKSQYAKVLTELTQLKQLVDAQKDNSVSITEHLQVVTALRTAAKEMEGKISSLQEHLASKEGDVAKLEKQLLEEKAAVIDAMVPRSAYEKLQSSWESEVSVLSSKLKESVKEKEKAHSEVAQLKSEVSQMKKDKENVQALLKSKEQEVSELGKFQHAQEELVEMKRHSESSSKMDEDKDKKINEMSKEVIKLKEALNSLSQLSYSASSSKRQSQQLEVLQQQVKQLQNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILTMCKNQSQKK", "length": 970, "header": "tr|A0A8W4FKP2-1|F1SP04_PIG Computationally mapped isoform of Retinoic acid induced 14 OS=Sus scrofa OX=9823 GN=RAI14 PE=1 SV=1 CANONICAL=F1SP04-1" }, "locus": { "chromosome": "16", "start_pos": 20434122, "end_pos": 20298268, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105691.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105691.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079787.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079787.1" } ] } }, { "isoform_ac": "F1SP04-1", "url": "https://www.uniprot.org/uniprotkb/F1SP04/entry#F1SP04-1", "sequence": { "sequence": "MKSLKAKFRKSDTNEWNKNDDRLLQAVEHGDAEKVASLLGKKGASATKHDSEGKTAFHLAATKGHVECLRVMVTHGVDVTAQDTAGHSALHLAAKNSHHECVKKLLQSKCPAESVDSSGKTALHYAAAQGCLQAVQVLCEHKSPINLKDLDGNIPLLLAVQNSHSEVCRFLLDHGADVNSRDKNGRTALMLACEIGSSNIVEALITKGADLSLVDSLGHNALHYSKLSENAGIQSLLLSKISQDADLKTPTKPKQHDQVSKISSERSGTPKKRKAPPPPISPTQLSDVSSPRSITSTPLSGKESVFFAEPPFKAEISSIRENKDRLSDSTTGADSLLDISSEADQQELLVLLQAKVASLTLHNKELQDKLQAKAPREAEADLSFDSYHSTHTDLTPSLGKPRETSPPDSKSSPSVLPHPSSQSSLDGDVRIQQLQEVLQDLQKRLENSEAERRQLEAELQARRTEPVCVNNAEISENGSDLSQKLKETQSKYEEAMKEVLSVQKQMKLGLVSLESVDSYSHLRERRIPEKEIEVLKRDLRCALEESERHQEKVRELEEKLVEREKGAMKPPAEEVEEMKSSYCSVIENMNKEKAFLFEKYQEAQEEIAKLKDTLKSQTSPEAGDEAGDMREAMNRMIDELNKQVSELSQLYKEAQAELEDYRKRKSLEEVTAEYIHKAEHEKLMHETRLSGAKAEEALSEMKSQYAKVLTELTQLKQLVDAQKDNSVSITEHLQVVTALRTAAKEMEGKISSLQEHLASKEGDVAKLEKQLLEEKAAVIDAMVPRSAYEKLQSSWESEVSVLSSKLKESVKEKEKAHSEVAQLKSEVSQMKKDKENVQALLKSKEQEVSELGKFQHAQEELVEMKRHSESSSKMDEDKDKKINEMSKEVIKLKEALNSLSQLSYSASSSKRQSQQLEVLQQQVKQLQNQLAECKKQHQEVISVYRMHLLYAVQGQMDEDVQKVLKQILTMCKNQSQKK", "length": 978, "header": "tr|F1SP04-1|F1SP04_PIG Isoform 1 of Retinoic acid induced 14 OS=Sus scrofa OX=9823 GN=RAI14 PE=1 SV=3 CANONICAL=F1SP04-1" }, "locus": { "chromosome": "16", "start_pos": 20434122, "end_pos": 20297242, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018317.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018317.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017821.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017821.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRR7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRR7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1SP04", "url": "https://www.uniprot.org/uniprotkb/F1SP04" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SP04", "url": "https://www.uniprot.org/uniprotkb/F1SP04" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SP04", "url": "https://www.uniprot.org/uniprotkb/F1SP04" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SP04", "url": "https://www.uniprot.org/uniprotkb/F1SP04" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SP04", "url": "https://www.uniprot.org/uniprotkb/F1SP04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" }, { "start_pos": 973, "end_pos": 975, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP04-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 978, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP04-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP04" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 477, "end_pos": 479 }, { "start_pos": 973, "end_pos": 975 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHL4-1", "uniprot_ac": "F1SHL4", "uniprot_id": "F1SHL4_PIG", "mass": { "chemical_mass": 28275.0, "monoisotopic_mass": 28275.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "RRM domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SHL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SHL4", "locus": {} } ], "crossref": [ { "id": "F1SHL4", "url": "https://alphafold.ebi.ac.uk/entry/F1SHL4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001932", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001932", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012956", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012956", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QNTHAIN", "url": "https://omabrowser.org/oma/group/QNTHAIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48033", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48033", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48033:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48033:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08143", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08143", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QU70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QU70-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHL4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SEEQPWETTGATENRHEAAPEGESLPGSAPAPGSLPQRDWAPPRGNQNRIEGEQIKVSKNVEEEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQKEHRLNGDVIDPEKAKVMKNDPVKKIFVGPRRRTGIFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTISGRKCEIKVAQPKEDYQQQHTNYRKSQQRCGHQNNYKPY", "length": 247, "header": "tr|F1SHL4-1|F1SHL4_PIG Isoform 1 of RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=F1SHL4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QU70-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL4/entry#A0A5G2QU70-1", "sequence": { "sequence": "SEEQPWETTGATENRHEAAPEGESLPGSAPAPGSLPQRALKNRIEGEQIKVSKNVEEEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQKEHRLNGDVIDPEKAKVMKNDPPRRRTGIFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTISGRKCEIKVAQPKEDYQQQHTNYRKSQQRCGHQNNYKPY", "length": 234, "header": "tr|A0A5G2QU70-1|F1SHL4_PIG Computationally mapped isoform of RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=1 CANONICAL=F1SHL4-1" }, "locus": { "chromosome": "7", "start_pos": 61108699, "end_pos": 61098949, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068991.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068991.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068481.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068481.1" } ] } }, { "isoform_ac": "F1SHL4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL4/entry#F1SHL4-1", "sequence": { "sequence": "SEEQPWETTGATENRHEAAPEGESLPGSAPAPGSLPQRDWAPPRGNQNRIEGEQIKVSKNVEEEGKMFVGDLSWSNRKKDLKNYFTKFGEVIDCTIKMDPNTGRSRGFGFVLIKDAASVEKILDQKEHRLNGDVIDPEKAKVMKNDPVKKIFVGPRRRTGIFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEEPVKKVLEKKFHTISGRKCEIKVAQPKEDYQQQHTNYRKSQQRCGHQNNYKPY", "length": 247, "header": "tr|F1SHL4-1|F1SHL4_PIG Isoform 1 of RRM domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=3 CANONICAL=F1SHL4-1" }, "locus": { "chromosome": "7", "start_pos": 61108699, "end_pos": 61098949, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002164.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002164.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002113.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002113.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QU70", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QU70" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of RNA metabolic process", "id": "GO:0051252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051252", "evidence": [ { "database": "UniProtKB", "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" } ], "pmid": "" }, { "name": "positive regulation of macromolecule biosynthetic process", "id": "GO:0010557", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010557", "evidence": [ { "database": "UniProtKB", "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SHL4", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHL4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 247, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHL4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHL4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL4" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 65, "end_pos": 147, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SN77-1", "uniprot_ac": "F1SN77", "uniprot_id": "F1SN77_PIG", "mass": { "chemical_mass": 109802.0, "monoisotopic_mass": 109802.0 }, "refseq": { "ac": "XP_003133952", "name": "oncostatin-M-specific receptor subunit beta isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133952" }, "gene_names": [ { "name": "OSMR", "type": "recommended", "evidence": [ { "id": "F1SN77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ] }, { "name": "OSMR", "type": "synonym", "evidence": [ { "id": "XP_003133952", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133952" } ] } ], "protein_names": [ { "name": "Oncostatin-M-specific receptor subunit beta", "type": "recommended", "evidence": [ { "id": "F1SN77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN77/entry#names_and_taxonomy" } ] }, { "name": "Interleukin-31 receptor subunit beta", "type": "synonym", "evidence": [ { "id": "F1SN77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN77/entry#names_and_taxonomy" } ] }, { "name": "oncostatin-M-specific receptor subunit beta isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003133952", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133952" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OSMR", "url": "https://www.uniprot.org/uniprotkb/F1SN77", "locus": { "chromosome": "16", "start_pos": 24102177, "end_pos": 24041567, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016851", "url": "https://www.ensembl.org/id/ENSSSCG00000016851" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016851", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016851", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519398", "url": "https://www.ncbi.nlm.nih.gov/gene/100519398", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003529", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003529", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048497", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048497", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052672", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052672", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519398", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519398", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKMMQYN", "url": "https://omabrowser.org/oma/group/GKMMQYN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SN77", "url": "https://www.orthodb.org/?gene=F1SN77", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48423", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48423", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48423:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48423:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17971", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17971", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21177", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21177", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25552", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25552", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6788467", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6788467", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003133952", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133952", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QV00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QV00-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN77-1", "url": "https://www.uniprot.org/uniprotkb/F1SN77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALYTVFPTVFLLALLSLSTYQSKVLSKPLPLTPESLKVSINSAHQCLHLQWMVHSLAYHQELKMVFQIQISRFTTSNVIWTESYSTTVKGNQVLRWSWESELPLECATHFVRVRSMVDDARIPEPKFWSNWSRWEEADAQNSLGQDLLFLFPKDKLVEEGSDVTICYTSRNPQHNISCYLEGAQIHGKQLDPRVSAFELKNVSFIRRTGTNIFCEDPGVAMKGTVLFVSKILEEPKDFSCETQDFKNLNCTWDPGSDTALPKQPSQSYTLFESFSGKKILCEHRNFCNWQVAQDSQEMYNFTLVAENYLRKRSVNILFNLTHRVHPMIPYNLFFKNISATNATVTWKVHSAGNDSTLLCQLELFGEGKVIQQQNVSVKVNGEYLFNELEPDTKYVAQVRCAYADHFWKWSEPISQKFNTPEAAPSEALDVWRNVRLVSGHPTVNLFWKPLSKSHANGKILFYKVFVENLDNPSGLEDLSIPAPANSTELPLDRGSYQIHVTAHNSVGASPASVIVISGDSENREVEEGRVNGTEDGFSMSWKPQARDTVGYIVEWCDRPQDLPCDPQWKNVGPNTTSTVISSDTFRPGVRYNFRIYGISTDWTAHLLERKTGYVEELAPSDNPRVVTSNLTSHSFTLSWKDYSTESQPGFIQGYYLYLKSKAGEQCLPGFKKTGLLTGDSVCCKHRIDDPEQKTFVVENLQPESIYEFLVTPYTSAGEGPLGAFTKVTTPDEYSHILIRILLPMIFCVLLIMIVCYLKSQWLKEKCYPDIPDPYKSSVLSVIKSKENPHLTIMNVNDCVPDAIEVLNKPEGSKKQFVDARKSLTEAEFTKPTYLYLLPTEKNYPGSGPCICFENFTYNQAASGSGSCGPFPVTPQVPPGQPGPLTSPGNLLKALEKNYMSSLGEIPAGEASLNYVSQLASPMSGDKDNLPTNPPEPALCSEYKMQMAIPLGLASPPPSEKSRLSSPTFLDQGEHHR", "length": 977, "header": "tr|F1SN77-1|F1SN77_PIG Isoform 1 of Oncostatin-M-specific receptor subunit beta OS=Sus scrofa OX=9823 GN=OSMR PE=3 SV=3 CANONICAL=F1SN77-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QV00-1", "url": "https://www.uniprot.org/uniprotkb/F1SN77/entry#A0A5G2QV00-1", "sequence": { "sequence": "MVHSLAYHQELKMVFQIQISRFTTSNVIWTESYSTTVKGNQVLRWSWESELPLECATHFVRVRSMVDDARIPEPKFWSNWSRWEEADAQNSLGQDLLFLFPKDKLVEEGSDVTICYTSRNPQHNISCYLEGAQIHGKQLDPRVSAFELKNVSFIRRTGTNIFCEDPGVAMKGTVLFVSKILEEPKDFSCETQDFKNLNCTWDPGSDTALPKQPSQSYTLFESFSGKKILCEHRNFCNWQVAQDSQEMYNFTLVAENYLRKRSVNILFNLTHRVHPMIPYNLFFKNISATNATVTWKVHSAGNDSTLLCQLELFGEGKVIQQQNVSVKVNGEYLFNELEPDTKYVAQVRCAYADHFWKWSEPISQKFNTPEAAPSEALDVWRNVRLVSGHPTVNLFWKPLSKSHANGKILFYKVFVENLDNPSGLEDLSIPAPANSTELPLDRGSYQIHVTAHNSVGASPASVIVISGDSENREVEEGRVNGTEDGFSMSWKPQARDTVGYIVEWCDRPQDLPCDPQWKNVGPNTTSTVISSDTFRPGVRYNFRIYGISTDWTAHLLERKTGYVEELAPSDNPRVVTSNLTSHSFTLSWKDYSTESQPGFIQGYYLYLKSKAGEQCLPGFKKTGLLTGDSVCCKHRIDDPEQKTFVVENLQPESIYEFLVTPYTSAGEGPLGAFTKVTTPDEYSHILIRILLPMIFCVLLIMIVCYLKSQWLKEKCYPDIPDPYKSSVLSVIKSKENPHLTIMNVNDCVPDAIEVLNKPEGSKKQFVDARKSLTEAEFTKPTYLYLLPTEKNYPGSGPCICFENFTYNQAASGSGSCGPFPVTPQVPPGQPGPLTSPGNLLKALEKNYMSSLGEIPAGEASLNYVSQLASPMSGDKDNLPTNPPEPALCSEYKMQMAIPLGLASPPPSEKSRLSSPTFLDQGEHHR", "length": 925, "header": "tr|A0A5G2QV00-1|F1SN77_PIG Computationally mapped isoform of Oncostatin-M-specific receptor subunit beta OS=Sus scrofa OX=9823 GN=OSMR PE=3 SV=1 CANONICAL=F1SN77-1" }, "locus": { "chromosome": "16", "start_pos": 24100192, "end_pos": 24067679, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089392.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089392.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067964.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067964.1" } ] } }, { "isoform_ac": "F1SN77-1", "url": "https://www.uniprot.org/uniprotkb/F1SN77/entry#F1SN77-1", "sequence": { "sequence": "MALYTVFPTVFLLALLSLSTYQSKVLSKPLPLTPESLKVSINSAHQCLHLQWMVHSLAYHQELKMVFQIQISRFTTSNVIWTESYSTTVKGNQVLRWSWESELPLECATHFVRVRSMVDDARIPEPKFWSNWSRWEEADAQNSLGQDLLFLFPKDKLVEEGSDVTICYTSRNPQHNISCYLEGAQIHGKQLDPRVSAFELKNVSFIRRTGTNIFCEDPGVAMKGTVLFVSKILEEPKDFSCETQDFKNLNCTWDPGSDTALPKQPSQSYTLFESFSGKKILCEHRNFCNWQVAQDSQEMYNFTLVAENYLRKRSVNILFNLTHRVHPMIPYNLFFKNISATNATVTWKVHSAGNDSTLLCQLELFGEGKVIQQQNVSVKVNGEYLFNELEPDTKYVAQVRCAYADHFWKWSEPISQKFNTPEAAPSEALDVWRNVRLVSGHPTVNLFWKPLSKSHANGKILFYKVFVENLDNPSGLEDLSIPAPANSTELPLDRGSYQIHVTAHNSVGASPASVIVISGDSENREVEEGRVNGTEDGFSMSWKPQARDTVGYIVEWCDRPQDLPCDPQWKNVGPNTTSTVISSDTFRPGVRYNFRIYGISTDWTAHLLERKTGYVEELAPSDNPRVVTSNLTSHSFTLSWKDYSTESQPGFIQGYYLYLKSKAGEQCLPGFKKTGLLTGDSVCCKHRIDDPEQKTFVVENLQPESIYEFLVTPYTSAGEGPLGAFTKVTTPDEYSHILIRILLPMIFCVLLIMIVCYLKSQWLKEKCYPDIPDPYKSSVLSVIKSKENPHLTIMNVNDCVPDAIEVLNKPEGSKKQFVDARKSLTEAEFTKPTYLYLLPTEKNYPGSGPCICFENFTYNQAASGSGSCGPFPVTPQVPPGQPGPLTSPGNLLKALEKNYMSSLGEIPAGEASLNYVSQLASPMSGDKDNLPTNPPEPALCSEYKMQMAIPLGLASPPPSEKSRLSSPTFLDQGEHHR", "length": 977, "header": "tr|F1SN77-1|F1SN77_PIG Isoform 1 of Oncostatin-M-specific receptor subunit beta OS=Sus scrofa OX=9823 GN=OSMR PE=3 SV=3 CANONICAL=F1SN77-1" }, "locus": { "chromosome": "16", "start_pos": 24100192, "end_pos": 24058725, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018351.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018351.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017855.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017855.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QV00", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QV00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519398", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519398", "resource": "KEGG Pathway" }, { "id": "R-SSC-6788467", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6788467", "resource": "Reactome", "description": "IL-6-type cytokine receptor ligand interactions" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YLX6-1", "protein_name": "Leptin receptor", "gene_name": "OSMR", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMNHFVFLAVLLHLRTWCTAYSQQESLVFPVTYLNVHKDLPLQRLLVEWDVDKSARDAELVMSFEIQVRRAEEAIVWREFLNATLDKSGKPLHWMWNSDLPLECMSHSVRIRSKAEVSKTWSQWSPWETIQGLDTSNISEPRIFPDEKIIEEGSDISLCCIGRKGQIIKEFFLNSPIPYFNRTNSQVGLLIAKNVKFKGVPHVLCRESCSEDNCFAHAVFFVGRPPDTPRDFSCQTRNMREITCTWDQGRDTYLYGSHSSKYKLSEQFSKTSVPCTVNCSERCSCSWNVGKQRIYNITLTVENPLGQRTTMDVFDVAHRIHPLPPFQQWEEHTETEIELHWEQKEKEIELFCQAEVWQPNGKAKLYNSSDTQLYHNSITLGGLQPYTSYTSRVRCGAAKHFWRWSEWSKAHSFRTKEKAPSGKLDVWRKITPALQGRNVTLFWKQEAGFRANGEIISYEVTWEKVVDRFKPEHISLSSDRNSTRIFIDNHPYRISIMARNSVGYSHPSVLIIPGATDIEKKLNSSELKEEHVNGTDGGILISWKPRDKSDSYIIDWCNFPMLQPCDLQWRRFGPNTSSALIKSAAFVPGVRYNFHVYASAANRASLLEKKTGYLKELPPRFDPDVKKIELSYHEVTLYWDPYPTDEIHPGFLRGYHVYVSPVQEGCNLKGSKKHVLEGGSVVCKFTIENPEEKTYTVKHLTSNTKYKLAIKAYTGGGENSATNFRYIDTPLDSDMLYLLVLLVVVPSLIMAVCLWKMKWVKDCCCPVIPSPNKSKVLSFKEFKIGSEKVLKLSDCIPDTLSLDNKAEAKKLHPQSLMSSTPTEDKTDDQNLSSVYHNKSEERSFTSTPTPQTHTWFENFAYSSHLAVETNPSEAPETLQSCKGELSAVSYQPQYYLNILNDASTSSPGEAAGRKTNLRYISQTDVHCIGRRL", "length": 932 }, "evidence": [ { "id": "F1SN77", "url": "https://omabrowser.org/oma/group/F1SN77/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7JFG1-1", "protein_name": "Oncostatin-M-specific receptor subunit beta", "gene_name": "Osmr", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSYRLQTIRPMAFSVALHPAFLLVVLSLKTSRSEVLGEPFQLTPEILTVSTESKLQQVNLQWTVPNLTHQELKMAFQIEISRINTSNIVWVENYSTTVKWNQLLHWNWKSEIPLECVTHFIRIRAMVDDAKYLPQNSWSNWSSWKEVSVQVSVAPNTLLIFPDNKLLEEGSNVTICLLYGQYLYNVSCMLQKEPIHGEQLDSHVSLIKLNNVVFHSVSGTNIHCKAMNATKMIFGTVLFVSKVLEEPKNFSCETQDFKTLKCSWEPGVDTALVWSQQDSQSYTLYESFSGRRELCDHRNSHNWQITDDSQETYNFTLTTENNLRKRSVNLIFNLTHRVHQKAPHDVTLENIDARKANMTWKVLSRGNNYILLCQIELQHEREVIHEHNVSVHMSASYLFSDLEPDTKYKARVRCADANHFWKWSDWAQKEFCTPEAAPSQALDVWRQVRSENGSYVVTLFWKPLLKSQANGKIVSYNIVVENQDRLSESEHYSVPAPALGTQLSLDPCSYKIHITANNSVGVSPESVMVLSNDSGHEEVHEKRIKGTKDGFHISWEPTSGDALGYVVDWCVHSRDQHCDLQWKNLGPNTTSTNITSGAFKPGVRYNFRIFEKSMQQKAQLLEKQTGYTQELAPLENPEVTINNFTSNSFILSWPSYDSDFQSAFIEGYHVYLKSKEMQCHPKGKRMTLPDYWVLCEYEIKDPEQKAFTVENLRPESHYEFLVTPYTSAGQGPNETFTKVMTPDENSNMLLKIILPMTLCVLLIIIACYWKSQWVKEKCYPDIPNPYKSSILSLIKSKKNAHLIMNVKDCIPDVLEVINKVEGPKTQCIVSGNPHNEDVSMKPPSSVPTEDGSSGSVPFFFFENFTYDQSAFDSGSHGLIPGPLKDTPCQLGLLTPPEKLLNVLEKDYMKSLAESPTEETSLIYVSQLASPMGGDKDSLATNPPMPGHCSEYKMQMAVPGRLPSLALSENNSLTSEILLGQGEQ", "length": 984 }, "evidence": [ { "id": "F1SN77", "url": "https://omabrowser.org/oma/group/F1SN77/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O70458-1", "protein_name": "Oncostatin-M-specific receptor subunit beta", "gene_name": "Osmr", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFSVVLHPAFLLAVLSLRASRSEVLEEPLPLTPEIHKVSFQLKLQEVNLEWTVPALTHEELNMIFQIEISRLNISNTIWVENYSTTVKREEAVRWNWTSDIPLECVKHFIRIRALVDDTKSLPQSSWGNWSSWKEVNAKVSVEPDKSLIFPKDKVLEEGSNVTICLMYGQNVYNVSCKLQDEPIHGEQLDSHVSLLKLNNVVFLSDTGTNINCQATKGPKRIFGTVLFVSKVLEEPKNVSCETRDFKTLDCSWEPGVDTTLTWRKQRFQNYTLCESFSKRCEVSNYRNSYTWQITEGSQEMYNFTLTAENQLRKRSVNINFNLTHRVHPKAPQDVTLKIIGATKANMTWKVHSHGNNYTLLCQVKLQYGEVIHEHNVSVHMSANYLFSDLDPDTKYKAFVRCASANHFWKWSDWTQKEFSTPETAPSQALDVWRQVWSENGRRIVTLFWKPLLKSQANGKIISYNIVVENEAKPTESEHYCVWAPALSTNLSLDLQPYKIRITTNNSMGASPESLMVLSNDSGHEEVKEKTIKGIKDAFNISWEPVSGDTMGYVVDWCAHSQDQRCDLQWKNLGPNTTSTTITSDDFKPGVRYNFRIFERSVEHKARLVEKQRGYTQELAPLVNPKVEIPYSTPNSFVLRWPDYDSDFQAGFIKGYLVYVKSKEMQCNQPWERTLLPDNSVLCKYDINGSETKTLTVENLQPESLYEFFVTPYTSAGPGPNETFTKVTTPDARSHMLLQIILPMTLCVLLSIIVCYWKSQWVKEKCYPDIPNPYKSSILSLIKSKKNPHLIMNVKDCIPDVLEVINKAEGSKTQCVGSGKLHIEDVPTKPPIVPTEKDSSGPVPCIFFENFTYDQSAFDSGSHGLIPGPLKDTAHQLGLLAPPNKFQNVLKNDYMKPLVESPTEETSLIYVSQLASPMCGDKDTLATEPPVPVHGSEYKRQMVVPGSLASPSLKEDNSLTSTVLLGQGEQ", "length": 971 }, "evidence": [ { "id": "F1SN77", "url": "https://omabrowser.org/oma/group/F1SN77/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q65Z14-1", "protein_name": "Oncostatin-M-specific receptor subunit beta", "gene_name": "Osmr", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAFSVVLHQVTFLLAVLSLRTSQSKVLGEPLQLTPEIHTVSLQSALQEANLEWTVPTFSHQELNIVFQIEISRMRTSNTIWVGNYSTTVKHEETVHWKWTSDIPLECATHFIRIRAMVDDAQYPPQSSWSNWSSWKEVNAQVSVPPDTLLIFPEDRLLEEGSNVTICLMIGQNLYNVSCKLQEEPIRGEQLDSHLSLIKLNNVVFLNNAGTNINCKAMNGTKNTFGTVLFVSKVLEEPKNFSCETRDFKTLNCLWEPGIDTTLSWHKQRSQHYTLYESFSGRREVSNHRNSHTWQITEDSQETYNFTLTAENNLRKRSVSISFNLTHRVHPKAPHDVTLKTVGATKAHMTWKVPSRGDYTLLCQVELQCEGEVIHEHNVSVHTSANYLFSDLEPDTEYKACVRCASANHFWKWSDWMQKKFRTPEAAPSEALDVWRDVRTENGRHVVTLFWKPLLKSQANGKIISYNIVVENEANPTESEQYSVRAPALGTNLSLDLHPYKIHISANNSAGASPESLVVLSSHSGHEEVHEKTIKGIKNGFNISWEPVSGDAIGYVVDWCAHSQTQRCDLQWKNVGPNITSTIITSDAFEPGVRYNFRIFERSVEENVRLVEKQRGYTQELAPSVNPGVTIHNLTPNSFSLKWQDYASDFQSGFIKGYLVYLKSKELQCNPNWERTVLSDKSVLCKYDVDDPETKTLTVENLRPESLYEFLVTPYTSAGQGPNETYTKVTTPDVRSHMLLQIILPMTLGVFLSIIVCYWKSQWVKEKCYPDIPNPYKSSILSLIKSKKNPHLIMNVKDCIPDVLEVINKAEGSKTQCVGSGKLHTEDVPTKPPLVPTEKDSSGPMPFVFLENFTYDQSAFDSGSHGFIPGPLKNTPHQLGLLAPPNKLQNVLENDYMKSLVESPTEETSLIYVSQLASPICGDKDSLVTNPPMPVHGSEYKKQMALPGSLTSASLKENNLTS", "length": 962 }, "evidence": [ { "id": "F1SN77", "url": "https://omabrowser.org/oma/group/F1SN77/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99650-1", "protein_name": "Oncostatin-M-specific receptor subunit beta", "gene_name": "OSMR", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALFAVFQTTFFLTLLSLRTYQSEVLAERLPLTPVSLKVSTNSTRQSLHLQWTVHNLPYHQELKMVFQIQISRIETSNVIWVGNYSTTVKWNQVLHWSWESELPLECATHFVRIKSLVDDAKFPEPNFWSNWSSWEEVSVQDSTGQDILFVFPKDKLVEEGTNVTICYVSRNIQNNVSCYLEGKQIHGEQLDPHVTAFNLNSVPFIRNKGTNIYCEASQGNVSEGMKGIVLFVSKVLEEPKDFSCETEDFKTLHCTWDPGTDTALGWSKQPSQSYTLFESFSGEKKLCTHKNWCNWQITQDSQETYNFTLIAENYLRKRSVNILFNLTHRVYLMNPFSVNFENVNATNAIMTWKVHSIRNNFTYLCQIELHGEGKMMQYNVSIKVNGEYFLSELEPATEYMARVRCADASHFWKWSEWSGQNFTTLEAAPSEAPDVWRIVSLEPGNHTVTLFWKPLSKLHANGKILFYNVVVENLDKPSSSELHSIPAPANSTKLILDRCSYQICVIANNSVGASPASVIVISADPENKEVEEERIAGTEGGFSLSWKPQPGDVIGYVVDWCDHTQDVLGDFQWKNVGPNTTSTVISTDAFRPGVRYDFRIYGLSTKRIACLLEKKTGYSQELAPSDNPHVLVDTLTSHSFTLSWKDYSTESQPGFIQGYHVYLKSKARQCHPRFEKAVLSDGSECCKYKIDNPEEKALIVDNLKPESFYEFFITPFTSAGEGPSATFTKVTTPDEHSSMLIHILLPMVFCVLLIMVMCYLKSQWIKETCYPDIPDPYKSSILSLIKFKENPHLIIMNVSDCIPDAIEVVSKPEGTKIQFLGTRKSLTETELTKPNYLYLLPTEKNHSGPGPCICFENLTYNQAASDSGSCGHVPVSPKAPSMLGLMTSPENVLKALEKNYMNSLGEIPAGETSLNYVSQLASPMFGDKDSLPTNPVEAPHCSEYKMQMAVSLRLALPPPTENSSLSSITLLDPGEHYC", "length": 979 }, "evidence": [ { "id": "F1SN77", "url": "https://omabrowser.org/oma/group/F1SN77/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "oncostatin-M-mediated signaling pathway", "id": "GO:0038165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038165", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "cytokine-mediated signaling pathway", "id": "GO:0019221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019221", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "oncostatin-M receptor complex", "id": "GO:0005900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005900", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "receptor complex", "id": "GO:0043235", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043235", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "cytokine receptor activity", "id": "GO:0004896", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004896", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "growth factor binding", "id": "GO:0019838", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019838", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "cytokine binding", "id": "GO:0019955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019955", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "oncostatin-M receptor activity", "id": "GO:0004924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004924", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" }, { "name": "ciliary neurotrophic factor receptor binding", "id": "GO:0005127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005127", "evidence": [ { "database": "UniProtKB", "id": "F1SN77", "url": "https://www.uniprot.org/uniprotkb/F1SN77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 320, "end_pos": 322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 532, "end_pos": 534, "annotation": "n_glycosylation_sequon" }, { "start_pos": 575, "end_pos": 577, "annotation": "n_glycosylation_sequon" }, { "start_pos": 630, "end_pos": 632, "annotation": "n_glycosylation_sequon" }, { "start_pos": 855, "end_pos": 857, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SN77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN77" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 329, "end_pos": 423, "start_aa": "Ile", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 131, "end_pos": 133 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 202, "end_pos": 204 }, { "start_pos": 250, "end_pos": 252 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 320, "end_pos": 322 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 342, "end_pos": 344 }, { "start_pos": 354, "end_pos": 356 }, { "start_pos": 375, "end_pos": 377 }, { "start_pos": 486, "end_pos": 488 }, { "start_pos": 532, "end_pos": 534 }, { "start_pos": 575, "end_pos": 577 }, { "start_pos": 630, "end_pos": 632 }, { "start_pos": 855, "end_pos": 857 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG40-1", "uniprot_ac": "F1SG40", "uniprot_id": "F1SG40_PIG", "mass": { "chemical_mass": 135402.0, "monoisotopic_mass": 135402.0 }, "refseq": {}, "gene_names": [ { "name": "WASHC4", "type": "recommended", "evidence": [ { "id": "F1SG40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG40" } ] } ], "protein_names": [ { "name": "WASH complex subunit 4", "type": "synonym", "evidence": [ { "id": "F1SG40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG40/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG40", "url": "https://www.uniprot.org/uniprotkb/F1SG40" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WASHC4", "url": "https://www.uniprot.org/uniprotkb/F1SG40", "locus": { "chromosome": "5", "start_pos": 79417130, "end_pos": 79474609, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000840", "url": "https://www.ensembl.org/id/ENSSSCG00000000840" } ] } } ], "crossref": [ { "id": "F1SG40", "url": "https://alphafold.ebi.ac.uk/entry/F1SG40", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000840", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000840", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027307", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027307", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31409", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31409", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31409:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31409:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14745", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14745", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14746", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14746", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QZV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG40", "url": "https://www.uniprot.org/uniprotkb/F1SG40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG40-1", "url": "https://www.uniprot.org/uniprotkb/F1SG40-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFNLDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYGEGATDSSMVEGDCQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIETTGVHFQTMYEHLGELLTILLTLDEIIDNHITLKDHWTMYKRLLKSVHHNPSKFGIQEEKLKPFEKFLLKLEGQLLDGMIFQACIEQQFDSLNGGISVSKNSTFAEEFAHSIRSIFANVEAKLEGKYVGICGLFVLHFQIFRTVDKKFYKSLLDICKKVPAITLTANIIWFPDNFLIQKIPAAAKMLDKKSLQAIKAYRDTFLQQKAQSLTKDVQSYYVFVSSWMMKMESILSKEQRMDKFAEDLTNRCNVFIQGFLYAYSISTIIKTTMNLYMSMQKPMTKTSVKALCRLVELLKAIEHMFYRRSMVVADSVSHITQHLQHQALNSISVAKKRVISDKKYSEQRLDVLSALVLAENTLNGPSTKQRRLIVSLALSVGTQMKTFKDEELFPLQVVLKKLDLISELRERVQTQCDCCFLYWHRAVFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMNARHLESYEILLDCYDKEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLALFFSLNPIRFFNRFIDIRAYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQGLDVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTVNFTYQFLKKKFYIFSQFMYDEHIKSRLIKDIRFFREIKDQNDHKYPFERAEKFNRGIRKLGITPEGQSYLDQFRQLISQIGNAMGYVRMIRSGGLHCSSNAIRFVPDLEDIVNFEELVKEEGLAEETLKAARHLDSVLSDHTRNSAEGTEYFKMLVDVFAPEFRRPKNIHLRNFYIIVPPLTLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYQEFDSLHWFQSVREKYLKEIRAVAKQQNVQSTSQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKTAAEENQEKKEKEEETKASNGDLSDSTVSADPVVK", "length": 1165, "header": "tr|F1SG40-1|F1SG40_PIG Isoform 1 of WASH complex subunit 4 OS=Sus scrofa OX=9823 GN=WASHC4 PE=1 SV=4 CANONICAL=F1SG40-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZV1-1", "url": "https://www.uniprot.org/uniprotkb/F1SG40/entry#A0A5G2QZV1-1", "sequence": { "sequence": "MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFNLDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYGEGELQILAWWKVIAKFKWGDLFHSYRRSLQFLEDFHSIFSGISYQNKFLCIILIMDNFSPCLLKYVKFCTW", "length": 191, "header": "tr|A0A5G2QZV1-1|F1SG40_PIG Computationally mapped isoform of WASH complex subunit 4 OS=Sus scrofa OX=9823 GN=WASHC4 PE=1 SV=1 CANONICAL=F1SG40-1" }, "locus": { "chromosome": "5", "start_pos": 79474561, "end_pos": 79468018, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067256.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067256.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063780.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063780.1" } ] } }, { "isoform_ac": "F1SG40-1", "url": "https://www.uniprot.org/uniprotkb/F1SG40/entry#F1SG40-1", "sequence": { "sequence": "MAVETLSPDWEFDRVDDGSQKIHAEVQLKNYGKFLEEYTSQLRRIEDALDDSIGDVWDFNLDPIALKLLPYEQSSLLELIKTENKVLNKVITVYAALCCEIKKLKYEAETKFYNGLLFYGEGATDSSMVEGDCQIQMGRFISFLQELSCFVTRCYEVVMNVVHQLAALYISNKIAPKIIETTGVHFQTMYEHLGELLTILLTLDEIIDNHITLKDHWTMYKRLLKSVHHNPSKFGIQEEKLKPFEKFLLKLEGQLLDGMIFQACIEQQFDSLNGGISVSKNSTFAEEFAHSIRSIFANVEAKLEGKYVGICGLFVLHFQIFRTVDKKFYKSLLDICKKVPAITLTANIIWFPDNFLIQKIPAAAKMLDKKSLQAIKAYRDTFLQQKAQSLTKDVQSYYVFVSSWMMKMESILSKEQRMDKFAEDLTNRCNVFIQGFLYAYSISTIIKTTMNLYMSMQKPMTKTSVKALCRLVELLKAIEHMFYRRSMVVADSVSHITQHLQHQALNSISVAKKRVISDKKYSEQRLDVLSALVLAENTLNGPSTKQRRLIVSLALSVGTQMKTFKDEELFPLQVVLKKLDLISELRERVQTQCDCCFLYWHRAVFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMNARHLESYEILLDCYDKEIMEILNEHLLDKLCKEIEKDLRLSVHTHLKLDDRNPFKVGMKDLALFFSLNPIRFFNRFIDIRAYVTHYLDKTFYNLTTVALHDWATYSEMRNLATQRYGLVMTEAHLPSQTLEQGLDVLEIMRNIHIFVSRYLYNLNNQIFIERTSNNKHLNTINIRHIANSIRTHGTGIMNTTVNFTYQFLKKKFYIFSQFMYDEHIKSRLIKDIRFFREIKDQNDHKYPFERAEKFNRGIRKLGITPEGQSYLDQFRQLISQIGNAMGYVRMIRSGGLHCSSNAIRFVPDLEDIVNFEELVKEEGLAEETLKAARHLDSVLSDHTRNSAEGTEYFKMLVDVFAPEFRRPKNIHLRNFYIIVPPLTLNFVEHSISCKEKLNKKNKIGAAFTDDGFAMGVAYILKLLDQYQEFDSLHWFQSVREKYLKEIRAVAKQQNVQSTSQDEKLLQTMNLTQKRLDVYLQEFELLYFSLSSARIFFRADKTAAEENQEKKEKEEETKASNGDLSDSTVSADPVVK", "length": 1165, "header": "tr|F1SG40-1|F1SG40_PIG Isoform 1 of WASH complex subunit 4 OS=Sus scrofa OX=9823 GN=WASHC4 PE=1 SV=4 CANONICAL=F1SG40-1" }, "locus": { "chromosome": "5", "start_pos": 79474561, "end_pos": 79419473, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000914.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000914.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000894.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000894.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZV1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZV1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "WASH complex", "id": "GO:0071203", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071203", "evidence": [ { "database": "UniProtKB", "id": "F1SG40", "url": "https://www.uniprot.org/uniprotkb/F1SG40" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SG40", "url": "https://www.uniprot.org/uniprotkb/F1SG40" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SG40", "url": "https://www.uniprot.org/uniprotkb/F1SG40" } ], "pmid": "" }, { "name": "BLOC-1 complex", "id": "GO:0031083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031083", "evidence": [ { "database": "UniProtKB", "id": "F1SG40", "url": "https://www.uniprot.org/uniprotkb/F1SG40" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endosome organization", "id": "GO:0007032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007032", "evidence": [ { "database": "UniProtKB", "id": "F1SG40", "url": "https://www.uniprot.org/uniprotkb/F1SG40" } ], "pmid": "" }, { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "F1SG40", "url": "https://www.uniprot.org/uniprotkb/F1SG40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1099, "end_pos": 1101, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" }, { "start_pos": 731, "end_pos": 733, "annotation": "n_glycosylation_sequon" }, { "start_pos": 828, "end_pos": 830, "annotation": "n_glycosylation_sequon" }, { "start_pos": 832, "end_pos": 834, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG40-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1165, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG40-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG40" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG40" }, { "id": "PF14745", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14745" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WASH complex subunit 4 N-terminal", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 595, "start_aa": "Gly", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SG40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG40" }, { "id": "PF14746", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14746" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WASH complex subunit 7 C-terminal", "eco_id": "ECO_0000259", "start_pos": 958, "end_pos": 1127, "start_aa": "Thr", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SG40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG40" }, { "id": "PF14744", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14744" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WASH complex subunit 7 central", "eco_id": "ECO_0000259", "start_pos": 597, "end_pos": 940, "start_aa": "Phe", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1099, "end_pos": 1101 }, { "start_pos": 281, "end_pos": 283 }, { "start_pos": 731, "end_pos": 733 }, { "start_pos": 828, "end_pos": 830 }, { "start_pos": 832, "end_pos": 834 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP14-1", "uniprot_ac": "F1SP14", "uniprot_id": "F1SP14_PIG", "mass": { "chemical_mass": 71428.0, "monoisotopic_mass": 71428.0 }, "refseq": {}, "gene_names": [ { "name": "SLC45A2", "type": "recommended", "evidence": [ { "id": "F1SP14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ] } ], "protein_names": [ { "name": "Solute carrier family 45 member 2", "type": "synonym", "evidence": [ { "id": "F1SP14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP14/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC45A2", "url": "https://www.uniprot.org/uniprotkb/F1SP14", "locus": { "chromosome": "16", "start_pos": 19956366, "end_pos": 20023289, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016821", "url": "https://www.ensembl.org/id/ENSSSCG00000016821" } ] } } ], "crossref": [ { "id": "F1SP14", "url": "https://alphafold.ebi.ac.uk/entry/F1SP14", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016821", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016821", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17313", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17313", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "606748", "url": "https://www.ncbi.nlm.nih.gov/gene/606748", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003673", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003673", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023606", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023606", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050509", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:606748", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:606748", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LSMPYAM", "url": "https://omabrowser.org/oma/group/LSMPYAM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R2W6", "url": "https://www.orthodb.org/?gene=A0A5G2R2W6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19432", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19432", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19432:SF88", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19432:SF88", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19432:SF95", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19432:SF95", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48228:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48228:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02515", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02515", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13347", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13347", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5662702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5662702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R2W6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2W6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2W6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAQ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RE90", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RE90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RE90-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RE90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFV6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP14-1", "url": "https://www.uniprot.org/uniprotkb/F1SP14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP15", "url": "https://www.uniprot.org/uniprotkb/F1SP15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP15-1", "url": "https://www.uniprot.org/uniprotkb/F1SP15-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGARPLQGVRVVELAGLAPAPFCGMVLADFGAQVVRVDRPGSPGDPSPLARGKRSLVVNLKLPQGPAVMRRLCALADVVLEPFRPGVMEKLQLGPETLLRENPKLIYARLSGFGQSGRFFQVAGHDINYLALSGVLSRIGRSGENPQPPMNLLADFGGGSLMCALGIMMALFERTRSGKGQIIDASMVEGTAYLSSFLWKTQLTGLWDQPRGQNMLDGGAPFYTTYKTADGGFMAVGAIEQKFYELLVKALIADPRRKPIWAISITMTGVVLFDFAADFIDGPIKAYLFDVCTHQDKERGLHYHALFTGLGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSSLVLTLCFIIHLCSIPEAPLRDTAKDTPPRQAPQDPASSSDRMYEYGSIEKVKNSYVNPELALQGGKTKNPPAEQTQRTMTIKSLLRALMSMPAHYRCLCISHLIGWTAFLSNMLFFTDFMGQIVYHGDPYSAHNSTEFLIYQRGVEVGCWGLCINSVFSSLYSYFQKALVPYVGLKGLYFMGYLLFGLGTGFIGLFPNVYSTLVMCTSFGVMSSTLYTVPFNLIAMYHREEQEEQRQQAQGGGLDSSRRGQGLDCAALTCMVQLAQILVGGGLGFLVNVVGSVVVVVITASAAALIGCCFVALFVRYID", "length": 654, "header": "tr|F1SP14-1|F1SP14_PIG Isoform 1 of Solute carrier family 45 member 2 OS=Sus scrofa OX=9823 GN=SLC45A2 PE=1 SV=4 CANONICAL=F1SP14-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R2W6-1", "url": "https://www.uniprot.org/uniprotkb/F1SP14/entry#A0A5G2R2W6-1", "sequence": { "sequence": "MDESSGQPDVHTYKSLAEDGPFCSVEPPKRPTGSLVMHSMAMFGREFCYAVEAAYVTPVLLSVGLPKSLYSVVWLLSPVLGFLLQPVVGSASDHCRARWGRRRPYILALGVMMLLGMALYLNGDTIISALIADPRRKPIWAISITMTGVVLFDFAADFIDGPIKAYLFDVCTHQDKERGLHYHALFTGLGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSSLVLTLCFIIHLCSIPEAPLRDTAKDTPPRQAPQDPASSSDRMYEYGSIEKVKNSYVNPELALQGGKTKNPPAEQTQRTMTIKSLLRALMSMPAHYRCLCISHLIGWTAFLSNMLFFTDFMGQIVYHGDPYSAHNSTEFLIYQRGVEVGCWGLCINSVFSSLYSYFQKALVPYVGLKGLYFMGYLLFGLGTGFIGLFPNVYSTLVMCTSFGVMSSTLYTVPFNLIAMYHREEQEEQRQQAQGGGLDSSRRGQGLDCAALTCMVQLAQILVGGGLGFLVNVVGSVVVVVITASAAALIGCCFVALFVRYID", "length": 532, "header": "tr|A0A5G2R2W6-1|F1SP14_PIG Computationally mapped isoform of Solute carrier family 45 member 2 OS=Sus scrofa OX=9823 GN=SLC45A2 PE=1 SV=1 CANONICAL=F1SP14-1" }, "locus": { "chromosome": "16", "start_pos": 19999301, "end_pos": 19958340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072187.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072187.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071434.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071434.1" } ] } }, { "isoform_ac": "A0A5G2RAQ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SP14/entry#A0A5G2RAQ1-1", "sequence": { "sequence": "MRGARPLQGVRVVELAGLAPAPFCGMVLADFGAQVVRVDRPGSPGDPSPLARGKRSLVVNLKLPQGPAVMRRLCALADVVLEPFRPGVMEKLQLGPETLLRENPKLIYARLSGFGQSGRFFQVAGHDINYLALSGVLSRIGRSGENPQPPMNLLADFGGGSLMCALGIMMALFERTRSGKGQIIDASMVEGTAYLSSFLWKTQLTGLWDQPRGQNMLDGGAPFYTTYKTADGGFMAVGAIEQKFYELLVKGLGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSSLVLTLCFIIHLCSIPEAPLRDTAKDTPPRQAPQDPASSSDRMYEYGSIEKVKNSYVNPELALQGGKTKNPPAEQTQRTMTIKSLLRALMSMPAHYRCLCISHLIGWTAFLSNMLFFTDFMGQIVYHGDPYSAHNSTEFLIYQRGVEVGCWGLCINSVFSSLYSYFQKALVPYVGLKGLYFMGYLLFGLGTGFIGLFPNVYSTLVMCTSFGVMSSTLYTVPFNLIAMYHREEQEEQRQQAQGGGLDSSRRGQGLDCAALTCMVQLAQILVGGGLGFLVNVVGSVVVVVITASAAALIGCCFVALFVRYID", "length": 595, "header": "tr|A0A5G2RAQ1-1|F1SP14_PIG Computationally mapped isoform of Solute carrier family 45 member 2 OS=Sus scrofa OX=9823 GN=SLC45A2 PE=1 SV=2 CANONICAL=F1SP14-1" }, "locus": { "chromosome": "16", "start_pos": 20023223, "end_pos": 19958340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086392.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086392.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073410.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073410.2" } ] } }, { "isoform_ac": "A0A5G2RE90-1", "url": "https://www.uniprot.org/uniprotkb/F1SP14/entry#A0A5G2RE90-1", "sequence": { "sequence": "MDESSGQPDVHTYKSLAEDGPFCSVEPPKRPTGSLVMHSMAMFGREFCYAVEAAYVTPVLLSVGLPKSLYSVVWLLSPVLGFLLQPVVGSASDHCRARWGRRRPYILALGVMMLLGMALYLNGDTIISALIADPRRKPIWAISITMTGVVLFDFAADFIDGPIKAYLFDVCTHQDKERGLHYHALFTGLGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSSLVLTLCFIIHLCSIPEAPLRDTAKDTPPRQAPQDPASSSDRMYEYGSIEKVKNSYVNPELALQGGKTKNPPAEQTQRTMTIKSLLRALMSMPAHYRCLCISHLIGWTAFLSNMLFFTDFMGQIVYHGDPYSAHNSTEFLIYQRGVEVGCWGLCINSVLRRKALVPYVGLKGLYFMGYLLFGLGTGFIGLFPNVYSTLVMCTSFGVMSSTLYTVPFNLIAMYHREEQEEQRQQAQGGGLDSSRRGQGLDCAALTCMVQLAQILVGGGLGFLVNVVGSVVVVVITASAAALIGCCFVALFVRYID", "length": 526, "header": "tr|A0A5G2RE90-1|F1SP14_PIG Computationally mapped isoform of Solute carrier family 45 member 2 OS=Sus scrofa OX=9823 GN=SLC45A2 PE=1 SV=1 CANONICAL=F1SP14-1" }, "locus": { "chromosome": "16", "start_pos": 19999301, "end_pos": 19958340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075169.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075169.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072911.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072911.1" } ] } }, { "isoform_ac": "A0A5G2RFV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SP14/entry#A0A5G2RFV6-1", "sequence": { "sequence": "MRGARPLQGVRVVELAGLAPAPFCGMVLADFGAQVVRVDRPGSPGDPSPLARGKRSLVVNLKLPQGPAVMRRLCALADVVLEPFRPGVMEKLQLGPETLLRENPKLIYARLSGFGQSGRFFQVAGHDINYLALSGVLSRIGRSGENPQPPMNLLADFGGGSLMCALGIMMALFERTRSGKGQIIDASMVEGTAYLSSFLWKTQLTGLWDQPRGQNMLDGGAPFYTTYKTADGGFMAVGAIEQKFYELLVKGLGLKSDELPHQMSIRDWPEMKKKFADVFDFAADFIDGPIKAYLFDVCTHQDKERGLHYHALFTGLGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSSLVLTLCFIIHLCSIPEAPLRDTAKDTPPRQAPQDPASSSDRMYEYGSIEKVKNSYVNPELALQGGKTKNPPAEQVKMQNILVLAFCSYFQKVFFVSVLLACLM", "length": 453, "header": "tr|A0A5G2RFV6-1|F1SP14_PIG Computationally mapped isoform of Solute carrier family 45 member 2 OS=Sus scrofa OX=9823 GN=SLC45A2 PE=1 SV=2 CANONICAL=F1SP14-1" }, "locus": { "chromosome": "16", "start_pos": 20023223, "end_pos": 19971664, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075922.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075922.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069979.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069979.2" } ] } }, { "isoform_ac": "F1SP14-1", "url": "https://www.uniprot.org/uniprotkb/F1SP14/entry#F1SP14-1", "sequence": { "sequence": "MRGARPLQGVRVVELAGLAPAPFCGMVLADFGAQVVRVDRPGSPGDPSPLARGKRSLVVNLKLPQGPAVMRRLCALADVVLEPFRPGVMEKLQLGPETLLRENPKLIYARLSGFGQSGRFFQVAGHDINYLALSGVLSRIGRSGENPQPPMNLLADFGGGSLMCALGIMMALFERTRSGKGQIIDASMVEGTAYLSSFLWKTQLTGLWDQPRGQNMLDGGAPFYTTYKTADGGFMAVGAIEQKFYELLVKALIADPRRKPIWAISITMTGVVLFDFAADFIDGPIKAYLFDVCTHQDKERGLHYHALFTGLGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSSLVLTLCFIIHLCSIPEAPLRDTAKDTPPRQAPQDPASSSDRMYEYGSIEKVKNSYVNPELALQGGKTKNPPAEQTQRTMTIKSLLRALMSMPAHYRCLCISHLIGWTAFLSNMLFFTDFMGQIVYHGDPYSAHNSTEFLIYQRGVEVGCWGLCINSVFSSLYSYFQKALVPYVGLKGLYFMGYLLFGLGTGFIGLFPNVYSTLVMCTSFGVMSSTLYTVPFNLIAMYHREEQEEQRQQAQGGGLDSSRRGQGLDCAALTCMVQLAQILVGGGLGFLVNVVGSVVVVVITASAAALIGCCFVALFVRYID", "length": 654, "header": "tr|F1SP14-1|F1SP14_PIG Isoform 1 of Solute carrier family 45 member 2 OS=Sus scrofa OX=9823 GN=SLC45A2 PE=1 SV=4 CANONICAL=F1SP14-1" }, "locus": { "chromosome": "16", "start_pos": 20023223, "end_pos": 19958340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018315.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018315.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017819.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017819.4" } ] } }, { "isoform_ac": "F1SP15-1", "url": "https://www.uniprot.org/uniprotkb/F1SP14/entry#F1SP15-1", "sequence": { "sequence": "MDESSGQPDVHTYKSLAEDGPFCSVEPPKRPTGSLVMHSMAMFGREFCYAVEAAYVTPVLLSVGLPKSLYSVVWLLSPVLGFLLQPVVGSASDHCRARWGRRRPYILALGVMMLLGMALYLNGDTIISALIADPRRKPIWAISITMTGVVLFDFAADFIDGPIKAYLFDVCTHQDKERGLHYHALFTDSEDNDHKVTAEGTDEHACPLPLPLHQSPHWMDCLPVQHALLHRLHGPDCVPWGPLQCTQLYRVPHLPKRGRGWVLGLVHQLRVFLTLLLLSESFGSLRRIKGSLLHGVFAVWPGDGIYRALPKCLLHPGHVHLVWRDVQHPVHRAL", "length": 334, "header": "tr|F1SP15-1|F1SP14_PIG Computationally mapped isoform of Solute carrier family 45 member 2 OS=Sus scrofa OX=9823 GN=SLC45A2 PE=1 SV=3 CANONICAL=F1SP14-1" }, "locus": { "chromosome": "16", "start_pos": 19999301, "end_pos": 19961281, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018314.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018314.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017818.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017818.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R2W6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2W6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:606748", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:606748", "resource": "KEGG Pathway" }, { "id": "R-SSC-5662702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5662702", "resource": "Reactome", "description": "Melanin biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A3QW63-1", "protein_name": "Solute carrier family 45 member 2", "gene_name": "SLC45A2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTLTEQHFQESPPPPSEVAKADMDSTGGKEKAAQPSTARTGALVRKQQATGRLIMHSMAMFGREFCYAVEAAFVTPVLLSVGLPKSLYSLVWLISPILGFVLQPVVGSASDHCACSWGRRRPYILGLGIIMLVGMALYLNGDEMISAFIGEREKQRTWAIVITMLGVVLFDFAADFIDGPIKAYLFDVCSHEDKEKGLHYHALFTGLGGALGYLTGAVDWGETVLGYSLTSEFQVIFLLSALVFLICLIVHLRSIPEVPLRYGNKETKLLLEVTEPYKYRSIEEIKNGYSSCTDLNATSKTKKGTDASCSEAQRRMTLKSLLKTLLSMPSHYRCLCVSHLFGWMAFMSNMLFFTDFMGQVVYQGSPYASHNSTLYHTYRRGVEVGCWGLCINAIASSAYSYLQKVLLPYIGLKGLYFIGYLLFGLGTGLIGLFPNVYSTLVLCSLFGVMSSTLYTVPFQLIAEYHKEEEDLNLQQKEQGTEHGRGKGIDCAALTCMVQLAQIILGVGLGLLVSVAGSAVTVISASMVALIGCCFVAFCVRYVG", "length": 543 }, "evidence": [ { "id": "F1SP14", "url": "https://omabrowser.org/oma/group/F1SP14/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZR99-1", "protein_name": "Solute carrier family 45, member 2", "gene_name": "Slc45a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGSNGPTDTRAYQSLAEDCPFGSAEQPKRSTGRLVMHSMAMFGREFCYAVEAAYVTPVLLSVGLPKSLYSMVWLLSPILGFLLQPVVGSASDHCRARWGRRRPYILTLGVMMLLGMALYLNGDAAVSALVANPRQKLVWAISITMIGVVLFDFSADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGGALGYLLGAIDWMHLELGKLLGTEFQVMFFFSALVLTLCFITHLCSIPEDPLRDDATDPPLQPDPQGSSLSADGMPRYGSIEKVKNGDADTGLPVQGGKNKKPSGQSQRTMSMKSLLRALVNMPSHYRCLCISHLIGWTAFLSNMLFFTDFMGQIVYHGDPYGAHNSTEFLIYERGVEVGCWGLCINSVFSSVYSYFQKVMVSYIGLKGLYFMGYLLFGLGTGFIGLFPNVYSTLVLCSMFGVMSSTLYTVPFNLIAEYHREEEKEKQQEVPGGPDNHGRGKGVDCAALTCMVQLAQILVGGGLGFLVNMAGSVVVVVITASAVALIGCCFVALFVRYVD", "length": 530 }, "evidence": [ { "id": "F1SP14", "url": "https://omabrowser.org/oma/group/F1SP14/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MCN8-1", "protein_name": "Solute carrier family 45 member 2", "gene_name": "AMACR", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALRGITVVELAGLAPVPFCGMVLADFGAQVVRVDRPAARSGPSRLARGKRSLVVDLKQPRGAAVLRRLCARADVMLEPFRPGVMEKLQLGPEILQKENPRLIYARLSGFGQSGRFSKMAGHDINYLALSGVLSRIGRSGENPYAPLNLLADFGGGGLMCAMGIIMALFERTRSGKGQVIDASMVEGTAYLSSFMWKTQETGLWEQPRGQNMLDGGAPFYTTYRTADGGFMAVGAIEPQFYELLIKGLGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSSLVLTLCFIIHLCSIPEAPLRDVAKDIPPQQAPQDLALSSDKMYEYGSIEKVKNGYVNQELVLQGGKTKNPAEQTQRTMTLRSLLRALRSMPPHYRCLCISHLIGWTAFLSNMLFFTDFMGQIVYHGDPYGAHNSTEFLIYQRGVEVGCWGLCINSMFSSLYSYFQKVLVPCIGLKGLYFMGYLLFGLGTGFIGLFPNVYSTLAMCTLFGVMSSTLYTVPFTLIAVYHHEEQKQRALGGGPDGSSRGQGLDCAALTSMVQLAQILVGGGLGLLVNTAGSVVVVVITASAVALIGCCFVALFVRYVD", "length": 587 }, "evidence": [ { "id": "F1SP14", "url": "https://omabrowser.org/oma/group/F1SP14/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P58355-1", "protein_name": "Membrane-associated transporter protein", "gene_name": "Slc45a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGSNGPTDTHTYQSLAEDCPFGSVEQPKRSTGRLVMHSMAMFGREFCYAVEAAYVTPVLLSVGLPKSLYSMVWLLSPILGFLLQPVVGSASDHCRARWGRRRPYILTLAIMMLLGMALYLNGDAVVSALVANPRQKLIWAISITMVGVVLFDFSADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGGALGYILGAIDWVHLDLGRLLGTEFQVMFFFSALVLILCFITHLCSIPEAPLRDAATDPPSQQDPQGSSLSASGMHEYGSIEKVKNGGADTEQPVQEWKNKKPSGQSQRTMSMKSLLRALVNMPSHYRCLCVSHLIGWTAFLSNMLFFTDFMGQIVYHGDPYGAHNSTEFLIYERGVEVGCWGLCINSVFSSVYSYFQKAMVSYIGLKGLYFMGYLLFGLGTGFIGLFPNVYSTLVLCSMFGVMSSTLYTVPFNLIAEYHREEEKEKGQEAPGGPDNQGRGKGVDCAALTCMVQLAQILVGGGLGFLVNMAGSVVVVVITASAVSLIGCCFVALFVRYVD", "length": 530 }, "evidence": [ { "id": "F1SP14", "url": "https://omabrowser.org/oma/group/F1SP14/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q55GN9-1", "protein_name": "Major facilitator superfamily (MFS) profile domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGEQKYDRLNESESINVKVQDIKEYEEASSDNMRAQDINYQTQHNTDTTGSLIKFMFWLFCVCFSLAGVQFVYSIQFALGTPLFINKFKLSNSTTSIIQSIAGPVSGFLVQPIIGVYSDSCKSKWGRRKPYIVFGAVFVVIGLLVIAFSPQIGELFGDKADGATSSDHKSGLAIAIAGFVVMNLSVNIMQGPTRSLVSDVCPMDKQNLANSMAVNVMGFASIIANVIGSFFATNENSYRDLFVIGAGFVAFSVVPTIIVAKEKQLDSSIKSPSSPLEAFIRIKRAFATIPKELALISLVFFVSWFGFSPFMVTNTSYFQQNVFNGESEGLKFGFYGQAVFSAVSFFFSFFLSGLCNIFGEKIIYSASQLIAGASLILFLVFDHAQPWLAILLTGVVGINFCVFNAIPFAMMVKVISSKDIGLYMGVLNSSAVVSQTISIFTSGRVEAAKNQNVAWGIAYGGLFTLLGVFLAFILPKSKKVTEQINEESPLIK", "length": 492 }, "evidence": [ { "id": "F1SP14", "url": "https://omabrowser.org/oma/group/F1SP14/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9FE59-1", "protein_name": "Sucrose transport protein SUC4", "gene_name": "SUC4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATSDQDRRHRVTRNRPPIARPSTSSSRPVVSPPRSKVSKRVLLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSSDRCTSKYGRRRPFIVAGAVAISISVMVIGHAADIGWAFGDREGKIKPRAIVAFVLGFWILDVANNMTQGPCRALLADLTENDNRRTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFTKTVACNVECANLKSAFYIDVVFIAITTILSVSAAHEVPLASLASEAHGQTSGTDEAFLSEIFGTFRYFPGNVWIILLVTALTWIGWFPFILFDTDWMGREIYGGEPNIGTSYSAGVSMGALGLMLNSVFLGITSVLMEKLCRKWGAGFVWGISNILMAICFLGMIITSFVASHLGYIGHEQPPASIVFAAVLIFTILGIPLAITYSVPYALISIRIESLGLGQGLSLGVLNLAIVIPQVIVSVGSGPWDQLFGGGNSPALAVGAATGFIGGIVAILALPRTRIQKPIPLP", "length": 510 }, "evidence": [ { "id": "F1SP14", "url": "https://omabrowser.org/oma/group/F1SP14/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9UMX9-1", "protein_name": "Membrane-associated transporter protein", "gene_name": "SLC45A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVLLSVGLPSSLYSIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALYLNGATVVAALIANPRRKLVWAISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTGFGGALGYLLGAIDWAHLELGRLLGTEFQVMFFFSALVLTLCFTVHLCSISEAPLTEVAKGIPPQQTPQDPPLSSDGMYEYGSIEKVKNGYVNPELAMQGAKNKNHAEQTRRAMTLKSLLRALVNMPPHYRYLCISHLIGWTAFLSNMLFFTDFMGQIVYRGDPYSAHNSTEFLIYERGVEVGCWGLCINSVFSSLYSYFQKVLVSYIGLKGLYFTGYLLFGLGTGFIGLFPNVYSTLVLCSLFGVMSSTLYTVPFNLITEYHREEEKERQQAPGGDPDNSVRGKGMDCATLTCMVQLAQILVGGGLGFLVNTAGTVVVVVITASAVALIGCCFVALFVRYVD", "length": 530 }, "evidence": [ { "id": "F1SP14", "url": "https://omabrowser.org/oma/group/F1SP14/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "pmid": "" }, { "name": "melanosome membrane", "id": "GO:0033162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033162", "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "pmid": "" }, { "name": "catalytic activity", "id": "GO:0003824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003824", "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "pmid": "" }, { "name": "sucrose:proton symporter activity", "id": "GO:0008506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008506", "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "pmid": "" }, { "name": "D-glucose:proton symporter activity", "id": "GO:0005356", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005356", "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "developmental pigmentation", "id": "GO:0048066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048066", "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "pmid": "" }, { "name": "lysosomal lumen pH elevation", "id": "GO:0035752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035752", "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "pmid": "" }, { "name": "melanin biosynthetic process from tyrosine", "id": "GO:0006583", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006583", "evidence": [ { "database": "UniProtKB", "id": "F1SP14", "url": "https://www.uniprot.org/uniprotkb/F1SP14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 479, "end_pos": 481, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP14-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 654, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP14-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP14" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 479, "end_pos": 481 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJT1-1", "uniprot_ac": "F1SJT1", "uniprot_id": "F1SJT1_PIG", "mass": { "chemical_mass": 50767.0, "monoisotopic_mass": 50767.0 }, "refseq": { "ac": "XP_003132153", "name": "nuclease EXOG, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132153" }, "gene_names": [ { "name": "EXOG", "type": "recommended", "evidence": [ { "id": "F1SJT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ] }, { "name": "EXOG", "type": "synonym", "evidence": [ { "id": "XP_003132153", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132153" } ] } ], "protein_names": [ { "name": "Nuclease EXOG, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SJT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJT1/entry#names_and_taxonomy" } ] }, { "name": "Endonuclease G-like 1", "type": "synonym", "evidence": [ { "id": "F1SJT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJT1/entry#names_and_taxonomy" } ] }, { "name": "nuclease EXOG, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003132153", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132153" } ] } ], "function": [ { "annotation": "Endo/exonuclease with nicking activity towards supercoiled DNA, a preference for single-stranded DNA and 5'-3' exonuclease activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R308", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R308#function" }, { "database": "UniProtKB", "id": "ARBA00053281", "url": "https://www.uniprot.org/uniprotkb/ARBA00053281#function" }, { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EXOG", "url": "https://www.uniprot.org/uniprotkb/F1SJT1", "locus": { "chromosome": "13", "start_pos": 23307566, "end_pos": 23278932, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011258", "url": "https://www.ensembl.org/id/ENSSSCG00000011258" } ] } } ], "crossref": [ { "id": "F1SJT1", "url": "https://alphafold.ebi.ac.uk/entry/F1SJT1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011258", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011258", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00091", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00091", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515859", "url": "https://www.ncbi.nlm.nih.gov/gene/100515859", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040255", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040255", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044925", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044925", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044929", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044929", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515859", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515859", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJT1", "url": "https://www.orthodb.org/?gene=F1SJT1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13966", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13966", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13966:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13966:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01223", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01223", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18026", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18026", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132153", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132153", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R308", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R308", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R308-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R308-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7T7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7T7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7T7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7T7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJT1-1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHILSLQGIMLLLSVIQQTKDGDRMPLGLQVCHQGAREGLVGKARPCAPGEAQGQVTPGGACVSWPQGSDWLSGFRGAHALRRKAGAAGKMVVKSFASRFRGSRRFLSGFVAGAVVGAAGAGLTAVQFLRSRDAEPALAVKEPDGSSEKALLEQFGFPLTGTETRCYTNHALSYDQSKRVPRWVLEHISKSKITGDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQNFDNNAGYWNRIEMYCRELTERFEDVWIVSGPLTLPQTGSDGKKNVSYQVIGKDNVAVPSHLYKVILARRSPESAEPLALGAFVVPNEAIGFQPQLSEFQVSLRDLEKLSGLVFFPHLDRTSDIRNICEVDTCKLLDFREFTLYLSTRKIEGARSVLRLEKVMENLRSSGIEPDEYFMTRYKKKLEELRALEQSEVLERKPS", "length": 458, "header": "tr|F1SJT1-1|F1SJT1_PIG Isoform 1 of Nuclease EXOG, mitochondrial OS=Sus scrofa OX=9823 GN=EXOG PE=1 SV=4 CANONICAL=F1SJT1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R308-1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1/entry#A0A5G2R308-1", "sequence": { "sequence": "MVVKSFASRFRGSRRFLSGFVAGAVVGAAGAGLTAVQFLRSRDAEPALAVKEPDGDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQNFDNNAGYWNRIEMYCRELTERFEDVWIVSGPLTLPQTGSDGKKNVSYQVIGKDNVAVPSHLYKVILARRSPESAEPLALGAFVVPNEAIGFQPQLSEFQVSLRDLEKLSGLVFFPHLDRTSDIRNICEVDTCKLLDFREFTLYLSTRKIEGARSVLRLEKVMENLRSSGIEPDEYFMTRYKKKLEELRALEQSEVLERKPS", "length": 318, "header": "tr|A0A5G2R308-1|F1SJT1_PIG Computationally mapped isoform of Nuclease EXOG, mitochondrial OS=Sus scrofa OX=9823 GN=EXOG PE=1 SV=1 CANONICAL=F1SJT1-1" }, "locus": { "chromosome": "13", "start_pos": 23307537, "end_pos": 23279202, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069830.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069830.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071470.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071470.1" } ] } }, { "isoform_ac": "A0A5G2R7T7-1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1/entry#A0A5G2R7T7-1", "sequence": { "sequence": "MVVKSFASRFRGSRRFLSGFVAGAVVGAAGAGLTAVQFLRSRDAEPALAVKEPDDC", "length": 56, "header": "tr|A0A5G2R7T7-1|F1SJT1_PIG Computationally mapped isoform of Nuclease EXOG, mitochondrial OS=Sus scrofa OX=9823 GN=EXOG PE=1 SV=1 CANONICAL=F1SJT1-1" }, "locus": { "chromosome": "13", "start_pos": 23279622, "end_pos": 23279202, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084183.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084183.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073140.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073140.1" } ] } }, { "isoform_ac": "F1SJT1-1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1/entry#F1SJT1-1", "sequence": { "sequence": "MHILSLQGIMLLLSVIQQTKDGDRMPLGLQVCHQGAREGLVGKARPCAPGEAQGQVTPGGACVSWPQGSDWLSGFRGAHALRRKAGAAGKMVVKSFASRFRGSRRFLSGFVAGAVVGAAGAGLTAVQFLRSRDAEPALAVKEPDGSSEKALLEQFGFPLTGTETRCYTNHALSYDQSKRVPRWVLEHISKSKITGDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQNFDNNAGYWNRIEMYCRELTERFEDVWIVSGPLTLPQTGSDGKKNVSYQVIGKDNVAVPSHLYKVILARRSPESAEPLALGAFVVPNEAIGFQPQLSEFQVSLRDLEKLSGLVFFPHLDRTSDIRNICEVDTCKLLDFREFTLYLSTRKIEGARSVLRLEKVMENLRSSGIEPDEYFMTRYKKKLEELRALEQSEVLERKPS", "length": 458, "header": "tr|F1SJT1-1|F1SJT1_PIG Isoform 1 of Nuclease EXOG, mitochondrial OS=Sus scrofa OX=9823 GN=EXOG PE=1 SV=4 CANONICAL=F1SJT1-1" }, "locus": { "chromosome": "13", "start_pos": 23307537, "end_pos": 23278932, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012326.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012326.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012004.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012004.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 57, "start_aa": "Thr", "end_pos": 57, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr57", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R308", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R308" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515859", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515859", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" }, { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" }, { "name": "RNA endonuclease activity", "id": "GO:0004521", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004521", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" }, { "name": "single-stranded DNA endodeoxyribonuclease activity", "id": "GO:0000014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000014", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" }, { "name": "5'-3' exonuclease activity", "id": "GO:0008409", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008409", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "apoptotic DNA fragmentation", "id": "GO:0006309", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006309", "evidence": [ { "database": "UniProtKB", "id": "F1SJT1", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJT1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 458, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJT1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJT1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" }, { "id": "SM00892", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00892" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA/RNA non-specific endonuclease/pyrophosphatase/phosphodiesterase", "eco_id": "ECO_0000259", "start_pos": 166, "end_pos": 377, "start_aa": "Cys", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SJT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" }, { "id": "SM00477", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00477" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ENPP1-3/EXOG-like endonuclease/phosphodiesterase", "eco_id": "ECO_0000259", "start_pos": 167, "end_pos": 377, "start_aa": "Tyr", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "A0A5G2R308", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R308#function" }, { "id": "A0A5G2R308", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R308" }, { "id": "PIRSR640255-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR640255-2" } ], "binding_site_uniprot": 121, "amino_acid": "Ala", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 121, "end_pos": 121, "start_aa": "Ala", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SJT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJT1#function" }, { "id": "F1SJT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJT1" }, { "id": "PIRSR640255-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR640255-2" } ], "binding_site_uniprot": 261, "amino_acid": "Asn", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 261, "end_pos": 261, "start_aa": "Asn", "end_aa": "Asn", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 57 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 301, "end_pos": 303 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFW4-1", "uniprot_ac": "F1SFW4", "uniprot_id": "F1SFW4_PIG", "mass": { "chemical_mass": 117854.0, "monoisotopic_mass": 117854.0 }, "refseq": { "ac": "NP_001230251", "name": "integrator complex subunit 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230251" }, "gene_names": [ { "name": "INTS3", "type": "recommended", "evidence": [ { "id": "F1SFW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ] }, { "name": "INTS3", "type": "synonym", "evidence": [ { "id": "NP_001230251", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230251" } ] } ], "protein_names": [ { "name": "Integrator complex subunit 3", "type": "synonym", "evidence": [ { "id": "F1SFW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW4/entry#names_and_taxonomy" } ] }, { "name": "integrator complex subunit 3", "type": "synonym", "evidence": [ { "id": "NP_001230251", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230251" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "INTS3", "url": "https://www.uniprot.org/uniprotkb/F1SFW4", "locus": { "chromosome": "4", "start_pos": 95905150, "end_pos": 95944809, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006571", "url": "https://www.ensembl.org/id/ENSSSCG00000006571" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006571", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006571", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152330", "url": "https://www.ncbi.nlm.nih.gov/gene/100152330", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056518", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056518", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152330", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152330", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FEQYCLW", "url": "https://omabrowser.org/oma/group/FEQYCLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFW4", "url": "https://www.orthodb.org/?gene=F1SFW4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13587", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13587", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13587:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13587:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10189", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10189", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6807505", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230251", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230251", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R467", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R467", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R467-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R467-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1D695", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D695", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1D695-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D695-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D2ABX4", "url": "https://www.uniprot.org/uniprotkb/A0A8D2ABX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D2ABX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D2ABX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFW4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELQKGKGAAAAAASGAAGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTTGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTTPLLALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFEQLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNAAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1040, "header": "tr|F1SFW4-1|F1SFW4_PIG Isoform 1 of Integrator complex subunit 3 OS=Sus scrofa OX=9823 GN=INTS3 PE=1 SV=2 CANONICAL=F1SFW4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R467-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW4/entry#A0A5G2R467-1", "sequence": { "sequence": "MELQKGKGAAAAAASGAAGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTTGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTTPLLALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFEQLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEETLSSPPISPSRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNAAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1036, "header": "tr|A0A5G2R467-1|F1SFW4_PIG Computationally mapped isoform of Integrator complex subunit 3 OS=Sus scrofa OX=9823 GN=INTS3 PE=1 SV=2 CANONICAL=F1SFW4-1" }, "locus": { "chromosome": "4", "start_pos": 95944241, "end_pos": 95905523, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086359.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086359.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071128.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071128.2" } ] } }, { "isoform_ac": "A0A8D1D695-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW4/entry#A0A8D1D695-1", "sequence": { "sequence": "LEIKKTFGARSTRLERCMSIVTSMTTGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTTPLLALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFEQLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEETLSSPPISPSRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNAAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1000, "header": "tr|A0A8D1D695-1|F1SFW4_PIG Computationally mapped isoform of Integrator complex subunit 3 OS=Sus scrofa OX=9823 GN=INTS3 PE=1 SV=1 CANONICAL=F1SFW4-1" }, "locus": { "chromosome": "4", "start_pos": 95935335, "end_pos": 95905523, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088667.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088667.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070403.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070403.1" } ] } }, { "isoform_ac": "A0A8D2ABX4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW4/entry#A0A8D2ABX4-1", "sequence": { "sequence": "MELQKGKGAAAAAASGAAGGGGGAGAGAPGGGRLLLSTSLDAKDELEEVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTTPLLALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFEQLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNAAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1012, "header": "tr|A0A8D2ABX4-1|F1SFW4_PIG Computationally mapped isoform of Integrator complex subunit 3 OS=Sus scrofa OX=9823 GN=INTS3 PE=1 SV=1 CANONICAL=F1SFW4-1" }, "locus": { "chromosome": "4", "start_pos": 95944241, "end_pos": 95905523, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094783.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094783.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077358.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077358.1" } ] } }, { "isoform_ac": "F1SFW4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW4/entry#F1SFW4-1", "sequence": { "sequence": "MELQKGKGAAAAAASGAAGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTTGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTTPLLALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFEQLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNAAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1040, "header": "tr|F1SFW4-1|F1SFW4_PIG Isoform 1 of Integrator complex subunit 3 OS=Sus scrofa OX=9823 GN=INTS3 PE=1 SV=2 CANONICAL=F1SFW4-1" }, "locus": { "chromosome": "4", "start_pos": 95944241, "end_pos": 95905523, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007199.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007199.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007005.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007005.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R467", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R467" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152330", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152330", "resource": "KEGG Pathway" }, { "id": "R-SSC-6807505", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "resource": "Reactome", "description": "RNA polymerase II transcribes snRNA genes" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AI04-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEMQKGKGGAAGGGGGKLLLSTLLDAKDELEERLERCVGIVTSLTNGLSEREANDALNAHICKGTPQHEEICLGLFTLVLTEPTQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLMWLLRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAENVLEILTEQREWVLKSSLLIAMAVYTYLRLIVDHHGTAPLQALRQKEVDFCISLLRERFMDCFMIGRDLVRLLQNVARIPEFEQLWKDIIHNPQVLSTQFTGVLQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRLYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTPWLCCALDPLGSAFPASPSSSSRPFALRAVQILDASKSNVAASNAKLALFYDWLFFNPEKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEAHVRQGVFNSLTHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPIEVKIEEPVSMEMDNHMSDKDDSCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETIVEEPVDITPFLDQLDESLKDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSGFSLLLDLLSELYQKQPKIGYHLLYYLKASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCYLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCTWQLFLAHSIPLEAIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWGLKHDDLLAEHIKALLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDSLRLNLANTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSSKPPHSVFPPISPPPPPRRHRCADFQTRDVNKGVSTKGWG", "length": 1039 }, "evidence": [ { "id": "F1SFW4", "url": "https://omabrowser.org/oma/group/F1SFW4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7F730-1", "protein_name": "Integrator complex subunit 3 isoform X1", "gene_name": "Ints3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MELQKGKGTVAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTTGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQTLRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHLSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDVTPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEMREDFDSEQLSVLASCLQELFKAHFRGEVLPEEVTEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKALLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLANTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNTAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1043 }, "evidence": [ { "id": "F1SFW4", "url": "https://omabrowser.org/oma/group/F1SFW4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZUT9-1", "protein_name": "Integrator complex subunit 3", "gene_name": "Ints3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELQKGKGTVAAASSGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQLLMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQTLRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRSMLREKFPEFCSSPSPPVEASFPEASGILGSTRGYQESFFLYSQVKIEEPVSMEMDNHLSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDVTPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEVTEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETVIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKALLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLANTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNAAQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1066 }, "evidence": [ { "id": "F1SFW4", "url": "https://omabrowser.org/oma/group/F1SFW4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BN70-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MELQKGKGAAAAAASGAAGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTTGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILMEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLLRERFMECLMVGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKGHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1040 }, "evidence": [ { "id": "F1SFW4", "url": "https://omabrowser.org/oma/group/F1SFW4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q1LXC9-1", "protein_name": "Integrator complex subunit 3", "gene_name": "ints3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEPSPAKGKAQGRLLVSTSLDAKDELEERLERCMSITTSITNGLSEREANDALTAHVCKGPQQHEEVCLGLFTLLLTEPPQAQRCYRDLTLVNRDGMNVVLMKINQILMEKFLKLQDVCRTQLVWLVRELVKSGVIGADGVLMTLMKQIAGGDISSKNLWLAENVLDILVDQREWVLKSGMLVAMSLYTYLRLIVDHGTTSLLPLRQREVDFCIGLLRERFMECFIIGRDLVRLLQNVARIPEMELVWRDLLHSPQTLSPQFTGILQLLTSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTAESQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFNPEKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPHFFPPLEGQVRQGVFNSLNFIMEKRVLAHLAPLFDNPKLDRELRSMLRERFPEFCSSPSPPTEVKMEESVPLEMDNHVLDKEDGCYDNTDATFSDDEEELNNKGKKREFRFHQLKETYIDEPSDITPFVDQLDEALKERVLQLQKGSDTETHCEVMQEIVDLILEEDFDSEQMSTLASCLAELFKSHFRGDVLPEEITEESLEESVCKPVCLIFRNLCQMQEDNSGFSVLLDLLAELYQKQPKIGYHLLYYLKASKAASGKMSLYESFAQATALGDLHTCLMMDMKACQEDDVRLLCYLTPSIYSEFPDETLRSGELLNMIVAVIDSAQLQELMCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYSTWQLFLAHSIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPYHQEDQFTTSILRHWTAKHDDLLGEHIKALLIKNNNMPRKRQSLRSSSSKLAQLTLEQMLEHLDSLRLSLSNTKNNFFSQTPILQALQHVQASCDEAHKMRFSDLFSLAEEYEDSSKPPKSRRKAPASSPRSRKGAAPQPCNEEESVSSSASEEEDSKPKASKRKRKGSAVGSDSD", "length": 1017 }, "evidence": [ { "id": "F1SFW4", "url": "https://omabrowser.org/oma/group/F1SFW4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q68E01-1", "protein_name": "Integrator complex subunit 3", "gene_name": "INTS3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MELQKGKGAAAAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREANDALNAYVCKGLPQHEEICLGLFTLILTEPAQAQKCYRDLALVSRDGMNIVLNKINQILMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQALRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPDKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRAMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHMSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDITPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEITEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKSLLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLTNTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1043 }, "evidence": [ { "id": "F1SFW4", "url": "https://omabrowser.org/oma/group/F1SFW4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7PLS8-1", "protein_name": "Integrator complex subunit 3", "gene_name": "IntS3", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEQQQSKNNAHVSKLFICTAVDCKDDIEEKFERSFVTLQMQISGLSDKEMHDMLSQAVCKEKQHEEISIGFLYIMLTDPSMASKTYRDVTLVSRDGMNGIVTNLTFLVAEKYTKLTEVARRQLIWLLREFVKHQVLSVENVIWNCLRQAGGGDVSSRNLFLIESLLDIFIEFRTWLETNPFLVQSTVYSFVRLIEDHANPALLSLRQKEVKFTISLIRERFHDIIPLGRDFVRLLQNVARIPEFEQLWRDILFNPKMLHQTFNGIWQLLHIRTSRRFLQCRLLPEMERKISFLASSVKFGNQKRYQDWFQDKYFATPESHSLRSDLIRFIINVIHPTNDMLCSDIIPRWAIIGWLISSCTNPIASANAKLSLFYDWLFFDPAKDNIMNIEPGILVMYHSIRNHPFVSSTLLDFLCRITKNFFVKHEDKIRIGVYNSLKLILEKQVIPNLQPLFESPKLDRELRNLIRDNFREFLSPPANHGQLLFTSLHPVQGHILKKESDQRILHCENMDLHETGLINISGTIDEDKKILLVPTDQEIESVFSDETAENLRRVHNIEDNTDDDDDLPLSEVRLKEKPKVELAEAIAESFDAFVTKRNSYTWEAFLKDFRPLPASAFEEFQLNYVISNTVLILRETLPQQNIFSESKTEEKHLAKSISYPLYGLFRFLYENDEKSKKPFQTLLSEICEGIPEIGYLLLYFMKIYCKLQTRKNSQQSYQFKTTIYRQICDAADEKIGNCLLRDLDLLEKENTNIFLWLLPDIYREFKSIATNNTDLLRITLRCIDAKNVRDILYSIAQGKLTIFKQDGLIDCIRQSLEFETYEQFCLWQIVQAHDVPLRCIQDILPELEAGSHPEALSHFLLLLKNEEPTNEIIRLMLSRESKSKGDPFVTSALRFWCQRYEEKLSEIIASLLTSKYPSSSPNKRKRPPKGISVSTSTPSADQVLNHLEHYRRSCRHGTGTGLYVHDMMQRALQSAYSHSNDSTKKQFCDLFALAAEEDTTVGRRGGSGRGRKQPGSKKDVNNHGTSKKNPEMVKTIYSSDDNSSEEDWSKSKILQTAKRRKKANNDSD", "length": 1068 }, "evidence": [ { "id": "F1SFW4", "url": "https://omabrowser.org/oma/group/F1SFW4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7TPD0-1", "protein_name": "Integrator complex subunit 3", "gene_name": "Ints3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELQKGKGTVAAAASGAAGGGGGGAGAGAPGGGRLLLSTSLDAKDELEERLERCMSIVTSMTAGVSEREANDALNAYVCKGPPQHEEICLGLFTLVLTEPAQAQKCYRDLALVSRDGMNIVLNKINQLLMEKYLKLQDTCRTQLVWLVRELVKSGVLGADGVCMTFMKQIAGGDVTAKNIWLAESVLDILTEQREWVLKSSILIAMAVYTYLRLIVDHHGTAQLQTLRQKEVDFCISLLRERFMECLMIGRDLVRLLQNVARIPEFELLWKDIIHNPQALSPQFTGILQLLQSRTSRKFLACRLTPDMETKLLFMTSRVRFGQQKRYQDWFQRQYLSTPDSQSLRCDLIRYICGVVHPSNEVLSSDILPRWAIIGWLLTTCTSNVAASNAKLALFYDWLFFSPEKDSIMNIEPAILVMHHSMKPHPAITATLLDFMCRIIPNFYPPLEGHVRQGVFSSLNHIVEKRVLAHLAPLFDNPKLDKELRSMLREKFPEFCSSPSPPVEVKIEEPVSMEMDNHLSDKDESCYDNAEAAFSDDEEDLNSKGKKREFRFHPIKETVVEEPVDVTPYLDQLDESLRDKVLQLQKGSDTEAQCEVMQEIVDQVLEEDFDSEQLSVLASCLQELFKAHFRGEVLPEEVTEESLEESVGKPLYLIFRNLCQMQEDNSSFSLLLDLLSELYQKQPKIGYHLLYYLRASKAAAGKMNLYESFAQATQLGDLHTCLMMDMKACQEDDVRLLCHLTPSIYTEFPDETLRSGELLNMIVAVIDSAQLQELVCHVMMGNLVMFRKDSVLNILIQSLDWETFEQYCAWQLFLAHNIPLETIIPILQHLKYKEHPEALSCLLLQLRREKPSEEMVKMVLSRPCHPDDQFTTSILRHWCMKHDELLAEHIKALLIKNNSLPRKRQSLRSSSSKLAQLTLEQILEHLDNLRLNLANTKQNFFSQTPILQALQHVQASCDEAHKMKFSDLFSLAEEYEDSSTKPPKSRRKAALSSPRSRKNATQPPNAEEESGSSSASEEEDTKPKPTKRKRKGSSAVGSDSD", "length": 1041 }, "evidence": [ { "id": "F1SFW4", "url": "https://omabrowser.org/oma/group/F1SFW4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "integrator complex", "id": "GO:0032039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032039", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "SOSS complex", "id": "GO:0070876", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070876", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "INTAC complex", "id": "GO:0160232", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160232", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of transcription elongation by RNA polymerase II", "id": "GO:0034243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034243", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "response to ionizing radiation", "id": "GO:0010212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010212", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "double-strand break repair via homologous recombination", "id": "GO:0000724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000724", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "snRNA processing", "id": "GO:0016180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016180", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "mitotic G2/M transition checkpoint", "id": "GO:0044818", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044818", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" }, { "name": "RNA polymerase II transcription initiation surveillance", "id": "GO:0160240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160240", "evidence": [ { "database": "UniProtKB", "id": "F1SFW4", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 664, "end_pos": 666, "annotation": "n_glycosylation_sequon" }, { "start_pos": 896, "end_pos": 898, "annotation": "n_glycosylation_sequon" }, { "start_pos": 931, "end_pos": 933, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" }, { "id": "PF10189", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10189" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrator complex subunit 3 N-terminal", "eco_id": "ECO_0000259", "start_pos": 83, "end_pos": 489, "start_aa": "Gln", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFW4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW4" }, { "id": "PF24566", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24566" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ints3-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 580, "end_pos": 971, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 664, "end_pos": 666 }, { "start_pos": 896, "end_pos": 898 }, { "start_pos": 931, "end_pos": 933 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP82-1", "uniprot_ac": "F1SP82", "uniprot_id": "F1SP82_PIG", "mass": { "chemical_mass": 42584.0, "monoisotopic_mass": 42584.0 }, "refseq": { "ac": "XP_001928336", "name": "leucine-rich repeat-containing protein 19", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928336" }, "gene_names": [ { "name": "LRRC19", "type": "recommended", "evidence": [ { "id": "F1SP82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ] }, { "name": "LRRC19", "type": "synonym", "evidence": [ { "id": "XP_001928336", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928336" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat-containing protein 19", "type": "recommended", "evidence": [ { "id": "F1SP82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP82/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 19", "type": "synonym", "evidence": [ { "id": "XP_001928336", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928336" } ] } ], "function": [ { "annotation": "Pathogen-recognition receptor which mediates the activation of TRAF2- and TRAF6 NF-kappa-B signaling pathways and induces the expression of pro-inflammatory cytokines. In kidney, prevents infection by uropathogenic bacteria by inducing the production of cytokines, chemokines and antimicrobial substances. In gut, involved in host-microbiota interactions, plays a critical role in promoting the recruitment of immune cells and intestinal inflammation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4I5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4I5#function" }, { "database": "UniProtKB", "id": "ARBA00055634", "url": "https://www.uniprot.org/uniprotkb/ARBA00055634#function" }, { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC19", "url": "https://www.uniprot.org/uniprotkb/F1SP82", "locus": { "chromosome": "1", "start_pos": 196142701, "end_pos": 196129905, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005125", "url": "https://www.ensembl.org/id/ENSSSCG00000005125" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005125", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005125", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157858", "url": "https://www.ncbi.nlm.nih.gov/gene/100157858", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157858", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157858", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EVKCNFT", "url": "https://omabrowser.org/oma/group/EVKCNFT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SP82", "url": "https://www.orthodb.org/?gene=F1SP82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31450", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31450", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31450:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31450:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15176", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15176", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928336", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928336", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R4I5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4I5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4I5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP82-1", "url": "https://www.uniprot.org/uniprotkb/F1SP82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTISITILFWLLSILLLSDESQTSKIEVTYNYTAKNYTLIPENINKDVTILDLSYNQITLNITDTRVLQTYFLLTELYLIENNVIILHNNSFGKLSNLEILNICRNSIHIIQHNAFIGLNKLKQLHLCQNKILQLNSDIFIPLKNLILLNLQGNLISYFDVPQLFHLEFIILYGNPWNCSCSLLSLQNWLNTSNVTLENENITMCSYPDILNRYNIKMVPYEANCYSKFPSPITADLYHFQSVRDSTFNSSLNNLTSNSEHESHGKSWTLLIGVVVTVLVTSLLISIAIKCPVWYNFLLSYNHHRLEEHEAETYEDSFTGNPSSPSQIQDTNSEETTVIFEQLHSFVVDDDGFIEDKYIDTHELHEEN", "length": 369, "header": "tr|F1SP82-1|F1SP82_PIG Isoform 1 of Leucine-rich repeat-containing protein 19 OS=Sus scrofa OX=9823 GN=LRRC19 PE=4 SV=1 CANONICAL=F1SP82-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R4I5-1", "url": "https://www.uniprot.org/uniprotkb/F1SP82/entry#A0A5G2R4I5-1", "sequence": { "sequence": "KKESRFLTYRDKRKKAKEVTYNYTAKNYTLIPENINKDVTILDLSYNQITLNITDTRVLQTYFLLTELYLIENNVIILHNNSFGKLSNLEILNICRNSIHIIQHNAFIGLNKLKQLHLCQNKILQLNSDIFIPLKNLILLNLQGNLISYFDVPQLFHLEFIILYGNPWNCSCSLLSLQNWLNTSNVTLENENITMCSYPDILNRYNIKMVPYEANCYSKFPSPITADLYHFQSVRDSTFNSSLNNLTSNSEHESHGKSWTLLIGVVVTVLVTSLLISIAIKCPVWYNFLLSYNHHRLEEHEAETYEDSFTGNPSSPSQIQDTNSEETTVIFEQLHSFVVDDDGFIEDKYIDTHELHEEN", "length": 359, "header": "tr|A0A5G2R4I5-1|F1SP82_PIG Computationally mapped isoform of Leucine-rich repeat-containing protein 19 OS=Sus scrofa OX=9823 GN=LRRC19 PE=4 SV=1 CANONICAL=F1SP82-1" }, "locus": { "chromosome": "1", "start_pos": 196140679, "end_pos": 196129908, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071440.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071440.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071248.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071248.1" } ] } }, { "isoform_ac": "F1SP82-1", "url": "https://www.uniprot.org/uniprotkb/F1SP82/entry#F1SP82-1", "sequence": { "sequence": "MKTISITILFWLLSILLLSDESQTSKIEVTYNYTAKNYTLIPENINKDVTILDLSYNQITLNITDTRVLQTYFLLTELYLIENNVIILHNNSFGKLSNLEILNICRNSIHIIQHNAFIGLNKLKQLHLCQNKILQLNSDIFIPLKNLILLNLQGNLISYFDVPQLFHLEFIILYGNPWNCSCSLLSLQNWLNTSNVTLENENITMCSYPDILNRYNIKMVPYEANCYSKFPSPITADLYHFQSVRDSTFNSSLNNLTSNSEHESHGKSWTLLIGVVVTVLVTSLLISIAIKCPVWYNFLLSYNHHRLEEHEAETYEDSFTGNPSSPSQIQDTNSEETTVIFEQLHSFVVDDDGFIEDKYIDTHELHEEN", "length": 369, "header": "tr|F1SP82-1|F1SP82_PIG Isoform 1 of Leucine-rich repeat-containing protein 19 OS=Sus scrofa OX=9823 GN=LRRC19 PE=4 SV=1 CANONICAL=F1SP82-1" }, "locus": { "chromosome": "1", "start_pos": 196140679, "end_pos": 196136301, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005650.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005650.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005509.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005509.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4I5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4I5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157858", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157858", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IKD5-1", "protein_name": "Leucine-rich repeat-containing protein 19", "gene_name": "Lrrc19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRVTCLMTLFWPFSTLLLFDKSQASETEVKYNFTGRNYSLIPEDISNNVTILDLSYNQITLNASDIRVLQMYSLLTELYLMENNITVIYNNSFSNLSNLQILNICGNAISVIEQGSFVGLNEVKELYLCQNKILQLNPNTFVPLNNLKVLNLQGNLISHFAAPQLFHLELLTLDGNPWNCTCSLLELQNWLNKSHVTLENESITMCSYPDDLKHYSIKSAPFSTECHSKFISTITEDLYIDFQSIGNSTSNSPLNNLTKKSEHEPLGKSWALLVGVVITVLITSLLIFIAIKCPVWYNILLSYNHHRLEEHEAEIYETDLTRNPSSLSQITDTNSEDTTVIFEQLHSFVVDDDGFIEDRYIDINEVHEEK", "length": 370 }, "evidence": [ { "id": "F1SP82", "url": "https://omabrowser.org/oma/group/F1SP82/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0XQR6-1", "protein_name": "Leucine rich repeat containing 19", "gene_name": "LRRC19", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLHDTISCQCTEKSVWVYGAPRSNRKTLNMKLSWLIIWAGMLLLNQVTADCNITSQTVICDESGKNLTSIPTDLLPNVTKLNLKNNKITLKYDRKILIRLSNLTELYLNENTITLLYNNSFYSLTKLVILDISNNCINTIHQAAFAGLYQLIVLNLSYNRITQLDSDVLSSLKNLRVLNLQNNLLEYFHIKPSFKLTTITLDGNPWNCSCSLLDLQIWLTASNVTMENENNTTCTFPNIKQKFSIKTATIQLVDCETEKLSSETTIPSTYAIKHQSTDFLTALTSNITGNNETHAEFPVLGKSWTFLVGVLGFVLSTTLLIFTAIKCPTWYQYLMSYRHRRLEENDPEMFAREFSADMSSFPAISDINNEDPIVIFDKTNAFEPEEDGFIEDKYIDTYVTEQS", "length": 403 }, "evidence": [ { "id": "F1SP82", "url": "https://omabrowser.org/oma/group/F1SP82/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A6K7-1", "protein_name": "Leucine-rich repeat-containing protein 19", "gene_name": "Lrrc19", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKVTRFMFWLFSMLLSDKSQASETEVKCNFTRKNYALIPEGISSNVTILDLSYNQITLNASDTRTLQMYSLLTELYLMENNITALYNNTFSNLLNLEILNICGNSISVIQQGSFVGLNELKQLFLCQNKILQLTPDTLVPLNNLKVLDLRGNLISLFHAPRLSHLELLTLDGNPWNCTCGLLDLQNWLNTSNVTLENESITTCNYPDDLKHYSIKSAPFTTECHSKFISTIAEDLYIDFNRSLKNLTWNSEHEPLGKSWAFLVGVVATVLLTSLLIFIAIKCPIWYNILLSYNHHRLEEHEAETYDQGLTRNPSSLSQITDTNSEDNTVIFEQLHSFVVDDDGFIEDRYIDINEVHEEK", "length": 359 }, "evidence": [ { "id": "F1SP82", "url": "https://omabrowser.org/oma/group/F1SP82/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BZT5-1", "protein_name": "Leucine-rich repeat-containing protein 19", "gene_name": "Lrrc19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKVTRFMFWLFSMLLPSVKSQASETEVPCNFSRRNYTLIPEGISTNVTILDLSYNRITLNAADSRVLQMYSLLTELYLMENNIIALYNSSFRNLLNLEILNICGNSISVIQQGSFVGLNELKQLFLCQNKILQLNPDTFVPLNNLKVLNLQGNLIRLFDAPQLPHLEILTLDGNPWNCTCGLLELHNWLNTSNVTLENENMTMCSYPDELKHDSIKSAPFTTECHSTFISTITEDFQSTRNSSFNSSSHNLTWTSEHEPLGKSWAFLVGVVATVLLTSLLIFIAIKCPVWYNILLSYNHHRLEEHEAETYENGLTRNPSSLSQITDTNSEDTTVIFEQLHAFVVDDDGFIEDRYIDINEVHEEK", "length": 364 }, "evidence": [ { "id": "F1SP82", "url": "https://omabrowser.org/oma/group/F1SP82/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H756-1", "protein_name": "Leucine-rich repeat-containing protein 19", "gene_name": "LRRC19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKVTGITILFWPLSMILLSDKIQSSKREVQCNFTEKNYTLIPADIKKDVTILDLSYNQITLNGTDTRVLQTYFLLTELYLIENKVTILHNNGFGNLSSLEILNICRNSIYVIQQGAFLGLNKLKQLYLCQNKIEQLNADVFVPLRSLKLLNLQGNLISYLDVPPLFHLELITLYGNLWNCSCSLFNLQNWLNTSNVTLENENITMCSYPNSLQSYNIKTVPHKAECHSKFPSSVTEDLYIHFQPISNSIFNSSSNNLTRNSEHEPLGKSWAFLVGVVVTVLTTSLLIFIAIKCPIWYNILLSYNHHRLEEHEAETYEDGFTGNPSSLSQIPETNSEETTVIFEQLHSFVVDDDGFIEDKYIDIHELCEEN", "length": 370 }, "evidence": [ { "id": "F1SP82", "url": "https://omabrowser.org/oma/group/F1SP82/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of non-canonical NF-kappaB signal transduction", "id": "GO:1901224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901224", "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "pmid": "" }, { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "pmid": "" }, { "name": "regulation of cytokine production", "id": "GO:0001817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001817", "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "pmid": "" }, { "name": "toll-like receptor signaling pathway", "id": "GO:0002224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002224", "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "pmid": "" }, { "name": "host-mediated modulation of intestinal microbiota composition", "id": "GO:0048874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048874", "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1SP82", "url": "https://www.uniprot.org/uniprotkb/F1SP82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 192, "end_pos": 194, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP82" }, { "id": "SM00082", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00082" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRCT", "eco_id": "ECO_0000259", "start_pos": 176, "end_pos": 227, "start_aa": "Asn", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 179, "end_pos": 181 }, { "start_pos": 192, "end_pos": 194 }, { "start_pos": 195, "end_pos": 197 }, { "start_pos": 202, "end_pos": 204 }, { "start_pos": 250, "end_pos": 252 }, { "start_pos": 255, "end_pos": 257 }, { "start_pos": 32, "end_pos": 34 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 62, "end_pos": 64 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK11-1", "uniprot_ac": "F1SK11", "uniprot_id": "F1SK11_PIG", "mass": { "chemical_mass": 43599.0, "monoisotopic_mass": 43599.0 }, "refseq": {}, "gene_names": [ { "name": "PTCD2", "type": "recommended", "evidence": [ { "id": "F1SK11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK11" } ] } ], "protein_names": [ { "name": "Pentatricopeptide repeat-containing protein 2, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SK11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK11/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Involved in mitochondrial RNA maturation and mitochondrial respiratory chain function.", "evidence": [ { "database": "UniProtKB", "id": "F1SK11", "url": "https://www.uniprot.org/uniprotkb/F1SK11#function" }, { "database": "UniProtKB", "id": "ARBA00057704", "url": "https://www.uniprot.org/uniprotkb/ARBA00057704#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK11", "url": "https://www.uniprot.org/uniprotkb/F1SK11" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTCD2", "url": "https://www.uniprot.org/uniprotkb/F1SK11", "locus": { "chromosome": "16", "start_pos": 48636181, "end_pos": 48605012, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016975", "url": "https://www.ensembl.org/id/ENSSSCG00000016975" } ] } } ], "crossref": [ { "id": "F1SK11", "url": "https://alphafold.ebi.ac.uk/entry/F1SK11", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016975", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016975", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14700", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14700", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14700:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14700:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R4K0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4K0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4K0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCA0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK11", "url": "https://www.uniprot.org/uniprotkb/F1SK11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK11-1", "url": "https://www.uniprot.org/uniprotkb/F1SK11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAFRSSQQVLLLRSLVWPGVLDSGSTCCRCPLGAKRYLLTENIMKLKEFQHKKVAVACNLPGTKETYLRNLEEKLTQNKLILKEELRTLLHLCESRDDMELAKNVIYRYHAENRNMTVGEYKFGPLFMRLCYELDLEESAVELIKDQHLRGFFSDCTSFNILMDTLFIKGKYKSALEVMIEMKNQDVKFSKDTYVLAFAVCYKLNSPESFKICTTLREEALIKGEVLSRRASCFAVALALNQNQPAKALSIFSQIMKPESIICTNLNIMIHVQSNMLKALIEILKDATEGNLSRFVKKHVFSEEVLVKVREKVKHVPALLAKFDELYGKLHVNGQVTTYSLDALLCHTPRDVKSHMGLLNKRTVSRRTFQPLSQSLWAE", "length": 381, "header": "tr|F1SK11-1|F1SK11_PIG Isoform 1 of Pentatricopeptide repeat-containing protein 2, mitochondrial OS=Sus scrofa OX=9823 GN=PTCD2 PE=3 SV=4 CANONICAL=F1SK11-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R4K0-1", "url": "https://www.uniprot.org/uniprotkb/F1SK11/entry#A0A5G2R4K0-1", "sequence": { "sequence": "AALDNMAAAFRSSQQVLLLRSLVWPGVLDSGSTCCRCPLGAKRYLLTENIMKLKEFQHKKVAVACNLPGTKGALEVMIEMKNQDVKFSKDTYVLAFAVCYKLNSPESFKICTTLREEALIKGEVLSRRASCFAVALALNQNQPAKALSIFSQIMKPESIICTNLNIMIHVQSNMLKALIEILKDATEGNLSRFVKKHVFSEEVLVKVREKVKHVPALLAKFDELYGKLHVNGQVTTYSLDALLCHTPRDVKSHMGLLNKRTVSRRTFQPLSQSLWAE", "length": 277, "header": "tr|A0A5G2R4K0-1|F1SK11_PIG Computationally mapped isoform of Pentatricopeptide repeat-containing protein 2, mitochondrial OS=Sus scrofa OX=9823 GN=PTCD2 PE=3 SV=1 CANONICAL=F1SK11-1" }, "locus": { "chromosome": "16", "start_pos": 48635403, "end_pos": 48605025, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085059.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085059.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071263.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071263.1" } ] } }, { "isoform_ac": "A0A5G2RCA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SK11/entry#A0A5G2RCA0-1", "sequence": { "sequence": "TWSWLKTSFTGALEVMIEMKNQDVKFSKDTYVLAFAVCYKLNSPESFKICTTLREEALIKGEVLSRRASCFAVALALNQNQPAKALSIFSQIMKPESIICTNLNIMIHVQSNMLKALIEILKDATEGNLSRFVKKHVFSEEVLVKVREKVKHVPALLAKFDELYGKLHVNGQVTTYSLDALLCHTPRDVKSHMGLLNKRTVSRRTFQPLSQSLWAE", "length": 216, "header": "tr|A0A5G2RCA0-1|F1SK11_PIG Computationally mapped isoform of Pentatricopeptide repeat-containing protein 2, mitochondrial OS=Sus scrofa OX=9823 GN=PTCD2 PE=3 SV=1 CANONICAL=F1SK11-1" }, "locus": { "chromosome": "16", "start_pos": 48635403, "end_pos": 48611920, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091334.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091334.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068254.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068254.1" } ] } }, { "isoform_ac": "F1SK11-1", "url": "https://www.uniprot.org/uniprotkb/F1SK11/entry#F1SK11-1", "sequence": { "sequence": "MAAAFRSSQQVLLLRSLVWPGVLDSGSTCCRCPLGAKRYLLTENIMKLKEFQHKKVAVACNLPGTKETYLRNLEEKLTQNKLILKEELRTLLHLCESRDDMELAKNVIYRYHAENRNMTVGEYKFGPLFMRLCYELDLEESAVELIKDQHLRGFFSDCTSFNILMDTLFIKGKYKSALEVMIEMKNQDVKFSKDTYVLAFAVCYKLNSPESFKICTTLREEALIKGEVLSRRASCFAVALALNQNQPAKALSIFSQIMKPESIICTNLNIMIHVQSNMLKALIEILKDATEGNLSRFVKKHVFSEEVLVKVREKVKHVPALLAKFDELYGKLHVNGQVTTYSLDALLCHTPRDVKSHMGLLNKRTVSRRTFQPLSQSLWAE", "length": 381, "header": "tr|F1SK11-1|F1SK11_PIG Isoform 1 of Pentatricopeptide repeat-containing protein 2, mitochondrial OS=Sus scrofa OX=9823 GN=PTCD2 PE=3 SV=4 CANONICAL=F1SK11-1" }, "locus": { "chromosome": "16", "start_pos": 48635403, "end_pos": 48605040, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018485.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018485.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017985.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017985.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4K0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4K0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SK11", "url": "https://www.uniprot.org/uniprotkb/F1SK11" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of mRNA processing", "id": "GO:0050684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050684", "evidence": [ { "database": "UniProtKB", "id": "F1SK11", "url": "https://www.uniprot.org/uniprotkb/F1SK11" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SK11", "url": "https://www.uniprot.org/uniprotkb/F1SK11" } ], "pmid": "" }, { "name": "mitochondrion organization", "id": "GO:0007005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007005", "evidence": [ { "database": "UniProtKB", "id": "F1SK11", "url": "https://www.uniprot.org/uniprotkb/F1SK11" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SK11-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 381, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SK11-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SK11" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 293, "end_pos": 295 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLM7-1", "uniprot_ac": "F1SLM7", "uniprot_id": "F1SLM7_PIG", "mass": { "chemical_mass": 18266.0, "monoisotopic_mass": 18266.0 }, "refseq": { "ac": "XP_013840227", "name": "probable glutathione peroxidase 8 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840227" }, "gene_names": [ { "name": "GPX8", "type": "recommended", "evidence": [ { "id": "F1SLM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLM7" } ] }, { "name": "GPX8", "type": "synonym", "evidence": [ { "id": "XP_013840227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840227" } ] } ], "protein_names": [ { "name": "Glutathione peroxidase", "type": "recommended", "evidence": [ { "id": "F1SLM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLM7/entry#names_and_taxonomy" } ] }, { "name": "probable glutathione peroxidase 8 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_013840227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840227" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLM7", "url": "https://www.uniprot.org/uniprotkb/F1SLM7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPX8", "url": "https://www.uniprot.org/uniprotkb/F1SLM7", "locus": { "chromosome": "16", "start_pos": 34342403, "end_pos": 34336073, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021973", "url": "https://www.ensembl.org/id/ENSSSCG00000021973" } ] } } ], "crossref": [ { "id": "F1SLM7", "url": "https://alphafold.ebi.ac.uk/entry/F1SLM7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00340", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00340", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519691", "url": "https://www.ncbi.nlm.nih.gov/gene/100519691", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013376", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013376", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2R5V6", "url": "https://www.orthodb.org/?gene=A0A5G2R5V6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SLM7", "url": "https://www.orthodb.org/?gene=F1SLM7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11592", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11592", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11592:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11592:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00255", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00255", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3299685", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3299685", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013840227", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840227", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16833", "url": "https://www.rhea-db.org/rhea/16833", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R5V6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5V6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLM7", "url": "https://www.uniprot.org/uniprotkb/F1SLM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPLTAYPLRCSGPKAKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVLSFARNNYGVTFPIFHKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKYWRPEEPIEVIRPEIAALIRQMIIKKKEDL", "length": 158, "header": "tr|F1SLM7-1|F1SLM7_PIG Isoform 1 of Glutathione peroxidase OS=Sus scrofa OX=9823 GN=GPX8 PE=1 SV=2 CANONICAL=F1SLM7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R5V6-1", "url": "https://www.uniprot.org/uniprotkb/F1SLM7/entry#A0A5G2R5V6-1", "sequence": { "sequence": "MEPLTAYPLRCSGPKAKVFAVLLSMVLCTVMLFLLQLKFLKPKINSFYNFEVKDAKGRTVSLEKFKGKILQRRNQGGISGSIWSTLRVKL", "length": 90, "header": "tr|A0A5G2R5V6-1|F1SLM7_PIG Computationally mapped isoform of Glutathione peroxidase OS=Sus scrofa OX=9823 GN=GPX8 PE=1 SV=1 CANONICAL=F1SLM7-1" }, "locus": { "chromosome": "16", "start_pos": 34341353, "end_pos": 34336377, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089414.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089414.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069525.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069525.1" } ] } }, { "isoform_ac": "F1SLM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLM7/entry#F1SLM7-1", "sequence": { "sequence": "MEPLTAYPLRCSGPKAKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVLSFARNNYGVTFPIFHKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKYWRPEEPIEVIRPEIAALIRQMIIKKKEDL", "length": 158, "header": "tr|F1SLM7-1|F1SLM7_PIG Isoform 1 of Glutathione peroxidase OS=Sus scrofa OX=9823 GN=GPX8 PE=1 SV=2 CANONICAL=F1SLM7-1" }, "locus": { "chromosome": "16", "start_pos": 34341448, "end_pos": 34336377, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030961.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030961.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027275.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027275.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R5V6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5V6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3299685", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3299685", "resource": "Reactome", "description": "Detoxification of Reactive Oxygen Species" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "F1SLM7", "url": "https://www.uniprot.org/uniprotkb/F1SLM7" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SLM7", "url": "https://www.uniprot.org/uniprotkb/F1SLM7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular response to oxidative stress", "id": "GO:0034599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034599", "evidence": [ { "database": "UniProtKB", "id": "F1SLM7", "url": "https://www.uniprot.org/uniprotkb/F1SLM7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "peroxidase activity", "id": "GO:0004601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004601", "evidence": [ { "database": "UniProtKB", "id": "F1SLM7", "url": "https://www.uniprot.org/uniprotkb/F1SLM7" } ], "pmid": "" }, { "name": "glutathione peroxidase activity", "id": "GO:0004602", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004602", "evidence": [ { "database": "UniProtKB", "id": "F1SLM7", "url": "https://www.uniprot.org/uniprotkb/F1SLM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16833", "name": "", "equation": "2 glutathione + H2O2 = glutathione disulfide + 2 H2O", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16833", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16833" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLM7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 158, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLM7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLM7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SL61-1", "uniprot_ac": "F1SL61", "uniprot_id": "F1SL61_PIG", "mass": { "chemical_mass": 51051.0, "monoisotopic_mass": 51051.0 }, "refseq": { "ac": "XP_003481684", "name": "nuclear envelope integral membrane protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481684" }, "gene_names": [ { "name": "NEMP1", "type": "recommended", "evidence": [ { "id": "F1SL61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL61" } ] }, { "name": "NEMP1", "type": "synonym", "evidence": [ { "id": "XP_003481684", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481684" } ] } ], "protein_names": [ { "name": "Nuclear envelope integral membrane protein 1", "type": "synonym", "evidence": [ { "id": "F1SL61", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL61/entry#names_and_taxonomy" } ] }, { "name": "nuclear envelope integral membrane protein 1", "type": "synonym", "evidence": [ { "id": "XP_003481684", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481684" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SL61", "url": "https://www.uniprot.org/uniprotkb/F1SL61" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NEMP1", "url": "https://www.uniprot.org/uniprotkb/F1SL61", "locus": { "chromosome": "5", "start_pos": 22366539, "end_pos": 22390102, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025542", "url": "https://www.ensembl.org/id/ENSSSCG00000025542" } ] } } ], "crossref": [ { "id": "ENSSSCG00000025542", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025542", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100739342", "url": "https://www.ncbi.nlm.nih.gov/gene/100739342", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019358", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019358", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739342", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739342", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MAGCMKM", "url": "https://omabrowser.org/oma/group/MAGCMKM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SL61", "url": "https://www.orthodb.org/?gene=F1SL61", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13598", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13598", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13598:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13598:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481684", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481684", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R7V8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7V8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R7V8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7V8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL61", "url": "https://www.uniprot.org/uniprotkb/F1SL61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL61-1", "url": "https://www.uniprot.org/uniprotkb/F1SL61-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGGMKVAVLPAVGSGPWSWRSGGCGAVWLLLVLSGCLVCGSAGIDLKVVMLQESKVYCMNTSQQSCYKNVLIPKWHDVWTRIQIRVNSSKLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEEDTKYSVTVTRRFDPKLFLIFLLGLMLFFCGDLLSRSQIFYYSTGMSVGIVASLLIIIFILSKFMPKKSPIYIILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLAVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSSIQIPQISLAIIITALCTKNLEYPIHWLYITYRKMCKAAEKTVPPRLLTEEEYRIQGEVETRKALEKLREYCNSPDCAAWKTVSRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIIAQDELYEETSSEEGDTDSRYPAITQQNNFLT", "length": 445, "header": "tr|F1SL61-1|F1SL61_PIG Isoform 1 of Nuclear envelope integral membrane protein 1 OS=Sus scrofa OX=9823 GN=NEMP1 PE=3 SV=3 CANONICAL=F1SL61-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R7V8-1", "url": "https://www.uniprot.org/uniprotkb/F1SL61/entry#A0A5G2R7V8-1", "sequence": { "sequence": "MAGGMKVAVLPAVGSGPWSWRSGGCGAVWLLLVLSGCLVCGSAGIDLKVVMLQESKVYCMNTSQQSCYKNVLIPKWHDVWTRIQIRVNSSKLVRVTQVENEEKLKELEQSQIFYYSTGMSVGIVASLLIIIFILSKFMPKKSPIYIILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLAVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSSIQIPQISLAIIITALCTKNLEYPIHWLYITYRKMCKAAEKTVPPRLLTEEEYRIQGEVETRKALEKLREYCNSPDCAAWKTVSRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIIAQDELYEETSSEEGDTDSRYPAITQQNNFLT", "length": 372, "header": "tr|A0A5G2R7V8-1|F1SL61_PIG Computationally mapped isoform of Nuclear envelope integral membrane protein 1 OS=Sus scrofa OX=9823 GN=NEMP1 PE=3 SV=1 CANONICAL=F1SL61-1" }, "locus": { "chromosome": "5", "start_pos": 22390082, "end_pos": 22371326, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067321.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067321.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073348.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073348.1" } ] } }, { "isoform_ac": "F1SL61-1", "url": "https://www.uniprot.org/uniprotkb/F1SL61/entry#F1SL61-1", "sequence": { "sequence": "MAGGMKVAVLPAVGSGPWSWRSGGCGAVWLLLVLSGCLVCGSAGIDLKVVMLQESKVYCMNTSQQSCYKNVLIPKWHDVWTRIQIRVNSSKLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEEDTKYSVTVTRRFDPKLFLIFLLGLMLFFCGDLLSRSQIFYYSTGMSVGIVASLLIIIFILSKFMPKKSPIYIILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLAVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSSIQIPQISLAIIITALCTKNLEYPIHWLYITYRKMCKAAEKTVPPRLLTEEEYRIQGEVETRKALEKLREYCNSPDCAAWKTVSRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIIAQDELYEETSSEEGDTDSRYPAITQQNNFLT", "length": 445, "header": "tr|F1SL61-1|F1SL61_PIG Isoform 1 of Nuclear envelope integral membrane protein 1 OS=Sus scrofa OX=9823 GN=NEMP1 PE=3 SV=3 CANONICAL=F1SL61-1" }, "locus": { "chromosome": "5", "start_pos": 22390082, "end_pos": 22371326, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000446.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000446.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000440.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000440.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R7V8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R7V8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739342", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739342", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A9X4-1", "protein_name": "Nuclear envelope integral membrane protein 1", "gene_name": "NEMP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTSDGPRSLIGCCLVLLCRRRALCCEDVKEKVTALQEGSACCCAASHHFCYTNVHSPCWRDIWTRMQIQVNSDRVIRVTQVGSEEELRELEESKVWNFLSSLLKEKLNSTNIDVDLYSNKTCLKVELLEDGTKYCIVLSRWFDPKLFLVFFLGLLLFFCGDMLSRSQLFFYSAGISIGLLASLLILIYVMSKAMPKKSPVYFLLVGGWSFSLYLLQLVFKNLREICKSYWQYLLGYLLLMGFVSFGVCYRYGPLENERSINLLSWALQLLGLALMYLGIQIRPIALALVVIAVCTKNMDYPLQWVYGVYKRVQSARLGPSPPRLLTEEEYRIQGEVETRKALEELRNYCRSPDFSAWTAVSRIQSPKRFAEFVGGASHLTASEVSFHEQEYGLGGVFLEEQLFEEDEEEDFLHEETARAARGPTTLLTAD", "length": 430 }, "evidence": [ { "id": "F1SL61", "url": "https://omabrowser.org/oma/group/F1SL61/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A7MBC7-1", "protein_name": "Nuclear envelope integral membrane protein 1", "gene_name": "NEMP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGGMKVAVLPAVGAGPWSWGAGGCGAVRLLLVLFGCFVCGSAGIDLNVVTLRESEILFMNTSRQSCYKNVLIPKWHDIWTRIQIRVNSSKLVRVTQVENEDKLKELEQFSIWNFFSSFLKEKLNDTYINVGLYSTKTCLKVEILEEDTKYSVIVTRRFDPKLFLIFLLGLTLFFCGDLLSRSQIFYYSTGMSVGIVASLLIIIFIVSKFMPKKSPIYIILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLAVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLCFMYSSIQIPHIALAIVVIALCTKNLDYPIHWLYITYRKMCKATEKTVPPRLLTEEEYRLQGEVETRKALEQLREYCNSPDCSAWKTVSRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIIAQDELSEETSSEEEDSDSRYPLVVQQNSFLT", "length": 445 }, "evidence": [ { "id": "F1SL61", "url": "https://omabrowser.org/oma/group/F1SL61/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7FE40-1", "protein_name": "Nuclear envelope integral membrane protein 1", "gene_name": "nemp1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAGFMKYKSVSTTIETVRLKLILTAVLFLFPFSQTSGASRPIIEIKDGQEIKVQAAQHFCYNNTIIPGWRETWTRIQVRVWSTTKLKVTVVNDEQDLKELEHFSIWKLVQYFVREQTNETTISVSLFNNKTCFRVDPSESRTLYTVQPSRHFDIYLFLVFLAGVLLFFYADVLSRSQVFHYSAGMSTGMIASLLILIFIVYRFLPKKSPFYMLVVGGWSFSLYIIQLVFRNLQVILTDHWHLAIGYVFVVGFISFAVCYRYGPLVEERSINILSWALQIFGLLLVYAGIQVQQVAFAIMIAAFCSKNLEYPFNTAFMLYHKLKPKKLEPRRLLTEEEFQRQSEVETQKALEELRKYCGSPDFNTWKTVSRLQSPKRFADFIEGSPHLLSNEVSVHMQEYGLGGSFFEDELFSTDEEDKEEEEDGWETEDDIKPEVTSPRMNNTRGK", "length": 446 }, "evidence": [ { "id": "F1SL61", "url": "https://omabrowser.org/oma/group/F1SL61/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "M0R7R7-1", "protein_name": "Nuclear envelope integral membrane protein 1", "gene_name": "Nemp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGIKVAVWSAVGPGPGCCGAGGGGAAWLLLVVAGCVVGCSAGIDVNVVMLQESQVDMNSSQQFCYKNVLIPKWHDIWTRIQVRVNSSKLVRVTQVDSEERLKELEQFSVWNSLSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVTRRFDPKLFLVFLLGLTLFFCGDLLSRSQIFYYSTGMSVGIVASLLIVIFMISKLMPKRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWHYLLSYILTVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLGFMYSGIQIPHVAFALIVIALCTKNLEYPIYWLYSTYRRMCKASEKPVPPRLLTEEEYRIQGEVETQKALQELREFCNSPECSAWKTISRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSILAQDEELSSEEEGSEDLPLTQNSFLT", "length": 438 }, "evidence": [ { "id": "F1SL61", "url": "https://omabrowser.org/oma/group/F1SL61/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O14524-1", "protein_name": "Nuclear envelope integral membrane protein 1", "gene_name": "NEMP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGGMKVAVSPAVGPGPWGSGVGGGGTVRLLLILSGCLVYGTAETDVNVVMLQESQVCEKRASQQFCYTNVLIPKWHDIWTRIQIRVNSSRLVRVTQVENEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEIIEKDTKYSVIVIRRFDPKLFLVFLLGLMLFFCGDLLSRSQIFYYSTGMTVGIVASLLIIIFILSKFMPKKSPIYVILVGGWSFSLYLIQLVFKNLQEIWRCYWQYLLSYVLTVGFMSFAVCYKYGPLENERSINLLTWTLQLMGLCFMYSGIQIPHIALAIIIIALCTKNLEHPIQWLYITCRKVCKGAEKPVPPRLLTEEEYRIQGEVETRKALEELREFCNSPDCSAWKTVSRIQSPKRFADFVEGSSHLTPNEVSVHEQEYGLGSIIAQDEIYEEASSEEEDSYSRCPAITQNNFLT", "length": 444 }, "evidence": [ { "id": "F1SL61", "url": "https://omabrowser.org/oma/group/F1SL61/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6ZQE4-1", "protein_name": "Nuclear envelope integral membrane protein 1", "gene_name": "Nemp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGGIKVSVWSAVGPGPRCWGAGGGGGATWLLLVVAGCVVCGSADVNVVMLQESQVDMNSSQQFCYKNVLIPKWHDIWTRIQVRVNSSKLVRVTQVDNEEKLKELEQFSIWNFFSSFLKEKLNDTYVNVGLYSTKTCLKVEMIEKDTTYSVTVTRRFDPKLFLVFLLGLTLFFCGDLLSRSQIFYYSTGMSVGIVASLLIVIFMISKFMPKRSPIYVILVGGWSFSLYLIQLVFKNLQEIWRSYWHYLLSYILTVGFMSFAVCYKYGPLENERSINLLTWTLQLLGLGLMYSSIQIPHVAFALIVIALCTKNLEYPIHWLCSTYRRMCKASGKPVPPRLLTEEEYRIQGEVETQKALQELREFCNSPECSAWKTISRIQSPKRFADFVEGSFHLTPNEVSVHEQEYGLGSIFTQDEELSSEEEGSEYPTFTQNNFLT", "length": 437 }, "evidence": [ { "id": "F1SL61", "url": "https://omabrowser.org/oma/group/F1SL61/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear inner membrane", "id": "GO:0005637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005637", "evidence": [ { "database": "UniProtKB", "id": "F1SL61", "url": "https://www.uniprot.org/uniprotkb/F1SL61" } ], "pmid": "" }, { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "F1SL61", "url": "https://www.uniprot.org/uniprotkb/F1SL61" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "nuclear membrane organization", "id": "GO:0071763", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071763", "evidence": [ { "database": "UniProtKB", "id": "F1SL61", "url": "https://www.uniprot.org/uniprotkb/F1SL61" } ], "pmid": "" }, { "name": "erythrocyte enucleation", "id": "GO:0043131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043131", "evidence": [ { "database": "UniProtKB", "id": "F1SL61", "url": "https://www.uniprot.org/uniprotkb/F1SL61" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 61, "end_pos": 63 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SN94-1", "uniprot_ac": "F1SN94", "uniprot_id": "F1SN94_PIG", "mass": { "chemical_mass": 73560.0, "monoisotopic_mass": 73560.0 }, "refseq": { "ac": "XP_020932620", "name": "WD repeat-containing protein 70 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932620" }, "gene_names": [ { "name": "WDR70", "type": "recommended", "evidence": [ { "id": "F1SN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN94" } ] }, { "name": "WDR70", "type": "synonym", "evidence": [ { "id": "XP_020932620", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932620" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 70", "type": "recommended", "evidence": [ { "id": "F1SN94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN94/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 70 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020932620", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932620" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SN94", "url": "https://www.uniprot.org/uniprotkb/F1SN94" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR70", "url": "https://www.uniprot.org/uniprotkb/F1SN94", "locus": { "chromosome": "16", "start_pos": 22895796, "end_pos": 22599936, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016846", "url": "https://www.ensembl.org/id/ENSSSCG00000016846" } ] } } ], "crossref": [ { "id": "F1SN94", "url": "https://alphafold.ebi.ac.uk/entry/F1SN94", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016846", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016846", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517617", "url": "https://www.ncbi.nlm.nih.gov/gene/100517617", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517617", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517617", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SN94", "url": "https://www.orthodb.org/?gene=F1SN94", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16017:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16017:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020932620", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932620", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R8L5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8L5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8L5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN94", "url": "https://www.uniprot.org/uniprotkb/F1SN94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN94-1", "url": "https://www.uniprot.org/uniprotkb/F1SN94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSGCPIMERPGPSDVTGSDTSGPDPQLAVTMGFTGFGKKARTFDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRRQTEDIEPTPSGSNVARDCSKPSSRGTSSSESEESSDSSDDELIGPPLPLKMVEEPVNHLEEDILGPLPAPLGEEAEDDDDDDGDSEEEENPVQKIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIKGDQYIVDMANTKGHTAMLHTGSWHPKIKGEFVTCSNDATVRTWEVENPKKQKSVFKPRTMQGKKVVPTTCTYSRDGNLIAAACQNGSIQIWDRNLTVHPKFHYKQAHDPGTDTSCVTFSYDGTVLASRGGDDTLKLWDIRQFNKPLFSASGLPTMFPMTDCCFSPDDKLIVTGTSVQRGCGSGKLVFFERRTFQRVYEIDITDASVVRCLWHPKLNQIMVGTGNGLAKVYYDPNKSQRGAKLCVVKTQRKAKQAETLTQDYIITPHALPMFREPRQRSTRKQLEKDRLDPLKSHKPEPPVAGPGRGGRVGTHGGTLSSYIVKNIALDKTDDSNPREAILRHAKAAEDNPYWVSPAYSKTQPKTMFAQVESDDEETKNEPEWKKRKI", "length": 661, "header": "tr|F1SN94-1|F1SN94_PIG Isoform 1 of WD repeat-containing protein 70 OS=Sus scrofa OX=9823 GN=WDR70 PE=3 SV=4 CANONICAL=F1SN94-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R8L5-1", "url": "https://www.uniprot.org/uniprotkb/F1SN94/entry#A0A5G2R8L5-1", "sequence": { "sequence": "MERPGPSDVTGSDTSGPDPQLAVTMGFTGFGKKARTFDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRRQTEDIEPTPSGSNVARDCSKPSSRGTSSSESEESSDSSDDELIGPPLPLKMVEEPVNHLEEDILGPLPAPLGEEAEDDDDDDGDSEEEENPVQKIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIKGDQYIVDMANTKGHTAMLHTGSWHPKIKGEFVTCSNDATVRTWEVENPKKQKSVFKPRTMQGKKVVPTTCTYSRDGNLIAAACQNGSIQIWDRNLTVSQGHLSPLFLEENHLIKTNMC", "length": 386, "header": "tr|A0A5G2R8L5-1|F1SN94_PIG Computationally mapped isoform of WD repeat-containing protein 70 OS=Sus scrofa OX=9823 GN=WDR70 PE=3 SV=2 CANONICAL=F1SN94-1" }, "locus": { "chromosome": "16", "start_pos": 22789124, "end_pos": 22600023, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084384.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084384.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070468.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070468.2" } ] } }, { "isoform_ac": "F1SN94-1", "url": "https://www.uniprot.org/uniprotkb/F1SN94/entry#F1SN94-1", "sequence": { "sequence": "MRSGCPIMERPGPSDVTGSDTSGPDPQLAVTMGFTGFGKKARTFDLEAMFEQTRRTAVERSRKTLEAREKEEEMNREKELRRQTEDIEPTPSGSNVARDCSKPSSRGTSSSESEESSDSSDDELIGPPLPLKMVEEPVNHLEEDILGPLPAPLGEEAEDDDDDDGDSEEEENPVQKIPDSHEITLKHGTKTVSALGLDPSGARLVTGGYDYDVKFWDFAGMDASFKAFRSLQPCECHQIKSLQYSNTGDMILVVSGSSQAKVIDRDGFEVMECIKGDQYIVDMANTKGHTAMLHTGSWHPKIKGEFVTCSNDATVRTWEVENPKKQKSVFKPRTMQGKKVVPTTCTYSRDGNLIAAACQNGSIQIWDRNLTVHPKFHYKQAHDPGTDTSCVTFSYDGTVLASRGGDDTLKLWDIRQFNKPLFSASGLPTMFPMTDCCFSPDDKLIVTGTSVQRGCGSGKLVFFERRTFQRVYEIDITDASVVRCLWHPKLNQIMVGTGNGLAKVYYDPNKSQRGAKLCVVKTQRKAKQAETLTQDYIITPHALPMFREPRQRSTRKQLEKDRLDPLKSHKPEPPVAGPGRGGRVGTHGGTLSSYIVKNIALDKTDDSNPREAILRHAKAAEDNPYWVSPAYSKTQPKTMFAQVESDDEETKNEPEWKKRKI", "length": 661, "header": "tr|F1SN94-1|F1SN94_PIG Isoform 1 of WD repeat-containing protein 70 OS=Sus scrofa OX=9823 GN=WDR70 PE=3 SV=4 CANONICAL=F1SN94-1" }, "locus": { "chromosome": "16", "start_pos": 22891840, "end_pos": 22600002, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018344.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018344.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017848.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017848.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 90, "start_aa": "Thr", "end_pos": 90, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr90", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R8L5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8L5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517617", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517617", "resource": "KEGG Pathway" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SN94", "url": "https://www.uniprot.org/uniprotkb/F1SN94" } ], "pmid": "" }, { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "F1SN94", "url": "https://www.uniprot.org/uniprotkb/F1SN94" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "F1SN94", "url": "https://www.uniprot.org/uniprotkb/F1SN94" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SN94-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 661, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SN94-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SN94" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 90 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 360, "end_pos": 362 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 509, "end_pos": 511 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKL6-1", "uniprot_ac": "F1SKL6", "uniprot_id": "F1SKL6_PIG", "mass": { "chemical_mass": 32438.0, "monoisotopic_mass": 32438.0 }, "refseq": { "ac": "XP_003126080", "name": "ankyrin repeat domain-containing protein 54", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126080" }, "gene_names": [ { "name": "ANKRD54", "type": "recommended", "evidence": [ { "id": "F1SKL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKL6" } ] }, { "name": "ANKRD54", "type": "synonym", "evidence": [ { "id": "XP_003126080", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126080" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain-containing protein 54", "type": "recommended", "evidence": [ { "id": "F1SKL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKL6/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 54", "type": "synonym", "evidence": [ { "id": "XP_003126080", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126080" } ] } ], "function": [ { "annotation": "Plays an important role in regulating intracellular signaling events associated with erythroid terminal differentiation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R8P6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8P6#function" }, { "database": "UniProtKB", "id": "ARBA00037385", "url": "https://www.uniprot.org/uniprotkb/ARBA00037385#function" }, { "database": "UniProtKB", "id": "F1SKL6", "url": "https://www.uniprot.org/uniprotkb/F1SKL6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKL6", "url": "https://www.uniprot.org/uniprotkb/F1SKL6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKRD54", "url": "https://www.uniprot.org/uniprotkb/F1SKL6", "locus": { "chromosome": "5", "start_pos": 10017734, "end_pos": 10003891, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000120", "url": "https://www.ensembl.org/id/ENSSSCG00000000120" } ] } } ], "crossref": [ { "id": "F1SKL6", "url": "https://alphafold.ebi.ac.uk/entry/F1SKL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000120", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000120", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525518", "url": "https://www.ncbi.nlm.nih.gov/gene/100525518", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525518", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525518", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IQMRPSG", "url": "https://omabrowser.org/oma/group/IQMRPSG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKL6", "url": "https://www.orthodb.org/?gene=F1SKL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24197", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24197", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24197:SF44", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24197:SF44", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126080", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126080", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R8P6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8P6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8P6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8P6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9U7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9U7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9U7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKL6", "url": "https://www.uniprot.org/uniprotkb/F1SKL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAGGADDEPRSGRSSSDGECAVAPEPLTGPEGLFSFADFGSALGSGAGLSGRASGGAQSPLRYLHVLWQQDAEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLSILQEGHSHCLEAVRLEVKQIIQMLREYLERLGRHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQDMEKR", "length": 299, "header": "tr|F1SKL6-1|F1SKL6_PIG Isoform 1 of Ankyrin repeat domain-containing protein 54 OS=Sus scrofa OX=9823 GN=ANKRD54 PE=4 SV=3 CANONICAL=F1SKL6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R8P6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKL6/entry#A0A5G2R8P6-1", "sequence": { "sequence": "MAAAAGGADDEPRSGRSSSDGECAVAPEPLTGPEGLFSFADFGSALGSGAGLSGRASGGAQSPLRYLHVLWQQDAEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLSILQEGHSHCLEAVRLEVKQIIQMLREYLERLGRHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQDMEKR", "length": 283, "header": "tr|A0A5G2R8P6-1|F1SKL6_PIG Computationally mapped isoform of Ankyrin repeat domain-containing protein 54 OS=Sus scrofa OX=9823 GN=ANKRD54 PE=4 SV=1 CANONICAL=F1SKL6-1" }, "locus": { "chromosome": "5", "start_pos": 10016718, "end_pos": 10004019, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091584.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091584.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072688.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072688.1" } ] } }, { "isoform_ac": "A0A5G2R9U7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKL6/entry#A0A5G2R9U7-1", "sequence": { "sequence": "MPMTWKQCSCSWTTELTPTSEMGWGTHHCTWRPAPTTSLSSPLCCEEIIQMLREYLERLGRHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQDMEKR", "length": 107, "header": "tr|A0A5G2R9U7-1|F1SKL6_PIG Computationally mapped isoform of Ankyrin repeat domain-containing protein 54 OS=Sus scrofa OX=9823 GN=ANKRD54 PE=4 SV=1 CANONICAL=F1SKL6-1" }, "locus": { "chromosome": "5", "start_pos": 10016718, "end_pos": 10006760, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071715.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071715.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074074.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074074.1" } ] } }, { "isoform_ac": "F1SKL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKL6/entry#F1SKL6-1", "sequence": { "sequence": "MAAAAGGADDEPRSGRSSSDGECAVAPEPLTGPEGLFSFADFGSALGSGAGLSGRASGGAQSPLRYLHVLWQQDAEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLSILQEGHSHCLEAVRLEVKQIIQMLREYLERLGRHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQDMEKR", "length": 299, "header": "tr|F1SKL6-1|F1SKL6_PIG Isoform 1 of Ankyrin repeat domain-containing protein 54 OS=Sus scrofa OX=9823 GN=ANKRD54 PE=4 SV=3 CANONICAL=F1SKL6-1" }, "locus": { "chromosome": "5", "start_pos": 10016718, "end_pos": 10004019, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000126.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000126.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000124.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000124.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R8P6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8P6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525518", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525518", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q1LZC5-1", "protein_name": "Ankyrin repeat domain-containing protein 54", "gene_name": "ANKRD54", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAAGGADDESRSGRSSSDGECAVAPEPLTGPEGLFSFADFGSALGGGAGLPGRASGGAQSPLRYLHVLWQQDAEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANANDVETVQQLLEEGTDPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPLHLAACTNHAPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGHSQCLEAVRLEVKQIIQMLREYLERLGRHEQRERLDDLCTRLQKTSTREQVDEVTDLLASFTSLSLQMQNMEKR", "length": 299 }, "evidence": [ { "id": "F1SKL6", "url": "https://omabrowser.org/oma/group/F1SKL6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q566C8-1", "protein_name": "Ankyrin repeat domain-containing protein 54", "gene_name": "Ankrd54", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAATGGGAEDESRSGRSSSEGECAVAPEPLAEAGGLFSFADLGAALGSGAGLPGRAVGRAQSPLRYLQVLWQQDVEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANANDIETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQQDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGHSQCLEAVRLEVKQIIHMLREYLERLGRHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQSMEKR", "length": 299 }, "evidence": [ { "id": "F1SKL6", "url": "https://omabrowser.org/oma/group/F1SKL6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DGX3-1", "protein_name": "Ankyrin repeat domain-containing protein 54", "gene_name": "ankrd54", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDGSSPLLAAAGSDGDRSSSEGEYTLAGGPSAGDTEKREGESPMEAAGAGTVGFSISRLDTLSALRLNRTRPAADTELRYLHLLWKPGELLQAGRSTPGKITSSRVRRLARARRNMGPIGKDLHAVKRLREAANSNDIDTVRRLLEDDTDPCAADDKGRTALHFSSCNGNETIVQLLLSYGADPNQRDSLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLARSKLNILQEGDSRSLETLRGEVTQIIQMLREYLNIMGQSEEREKLEHISTQLQNTRTREQVDEVTDLLASFTSLSIQMQNMGDR", "length": 315 }, "evidence": [ { "id": "F1SKL6", "url": "https://omabrowser.org/oma/group/F1SKL6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6NXT1-1", "protein_name": "Ankyrin repeat domain-containing protein 54", "gene_name": "ANKRD54", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAGDADDEPRSGHSSSEGECAVAPEPLTDAEGLFSFADFGSALGGGGAGLSGRASGGAQSPLRYLHVLWQQDAEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQRDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGHAQCLEAVRLEVKQIIHMLREYLERLGQHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQSMEKR", "length": 300 }, "evidence": [ { "id": "F1SKL6", "url": "https://omabrowser.org/oma/group/F1SKL6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91WK7-1", "protein_name": "Ankyrin repeat domain-containing protein 54", "gene_name": "Ankrd54", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAATGGGADDESRSGRSSSDGECAVAPEPLAEAGGLVSFADFGVSLGSGAGLPGRSVGRAQSSLRYLQVLWQQDVEPRDELRCKIPAGRLRRAARPHRRLGPTGKEVHALKRLRDSANANDVETVQQLLEDGADPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPNQQDGLGNTPLHLAACTNHVPVITTLLRGGARVDALDRAGRTPLHLAKSKLNILQEGHSQCLEAVRLEVKQIIHMLREYLERLGRHEQRERLDDLCTRLQMTSTKEQVDEVTDLLASFTSLSLQMQSMEKR", "length": 299 }, "evidence": [ { "id": "F1SKL6", "url": "https://omabrowser.org/oma/group/F1SKL6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SKL6", "url": "https://www.uniprot.org/uniprotkb/F1SKL6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SKL6", "url": "https://www.uniprot.org/uniprotkb/F1SKL6" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "F1SKL6", "url": "https://www.uniprot.org/uniprotkb/F1SKL6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "F1SKL6", "url": "https://www.uniprot.org/uniprotkb/F1SKL6" } ], "pmid": "" }, { "name": "protein kinase regulator activity", "id": "GO:0019887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019887", "evidence": [ { "database": "UniProtKB", "id": "F1SKL6", "url": "https://www.uniprot.org/uniprotkb/F1SKL6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of intracellular signal transduction", "id": "GO:1902531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902531", "evidence": [ { "database": "UniProtKB", "id": "F1SKL6", "url": "https://www.uniprot.org/uniprotkb/F1SKL6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKL6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 299, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKL6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKL6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ40-1", "uniprot_ac": "F1SQ40", "uniprot_id": "F1SQ40_PIG", "mass": { "chemical_mass": 64544.0, "monoisotopic_mass": 64544.0 }, "refseq": { "ac": "XP_003132681", "name": "protein disulfide-isomerase A5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132681" }, "gene_names": [ { "name": "PDIA5", "type": "recommended", "evidence": [ { "id": "F1SQ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ40" } ] }, { "name": "PDIA5", "type": "synonym", "evidence": [ { "id": "XP_003132681", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132681" } ] } ], "protein_names": [ { "name": "Protein disulfide-isomerase A5", "type": "recommended", "evidence": [ { "id": "F1SQ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ40/entry#names_and_taxonomy" } ] }, { "name": "5.3.4.1", "type": "synonym", "evidence": [ { "id": "F1SQ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ40/entry#names_and_taxonomy" } ] }, { "name": "protein disulfide-isomerase A5", "type": "synonym", "evidence": [ { "id": "XP_003132681", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132681" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ40", "url": "https://www.uniprot.org/uniprotkb/F1SQ40" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PDIA5", "url": "https://www.uniprot.org/uniprotkb/F1SQ40", "locus": { "chromosome": "13", "start_pos": 137296883, "end_pos": 137398628, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011870", "url": "https://www.ensembl.org/id/ENSSSCG00000011870" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011870", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011870", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02961", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02961", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02997", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02997", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03067", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03067", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518582", "url": "https://www.ncbi.nlm.nih.gov/gene/100518582", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518582", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518582", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FCKKMKP", "url": "https://omabrowser.org/oma/group/FCKKMKP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQ40", "url": "https://www.orthodb.org/?gene=F1SQ40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45672:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45672:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00085", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132681", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132681", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R9R6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9R6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ40", "url": "https://www.uniprot.org/uniprotkb/F1SQ40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ40-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ40-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLWQTWHRELGGGERLGSGGGCCTRRCCGRGSPRGDRSRPWAAAAGMARVGPAWLLLLAVWVVLPAWLSSTKVSSLIEKISDPKDLKKLLRTRNNVLVLYSKSEAAAESHLRLLSTVAQAVKGQGTICWVDCGDAESRKLCKKMKVDLSAKDKKVELFHYQDGAFHTEYNRAVTFKSIVAFLKDPKGPPLWEEDPGAKDVVHIDSEKDFRRLLKKEEKPILMMFYASWCSVCKRIMPHFQKAATQLRGQFVLAGMNVYSSEFENIKEEYGVRGYPTICYFEKGRFLFQYDSYGSTAEDIVEWLKNPQPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFENAAEVLHGEADSSGVLAAVDATVHKALAERFHISEFPTLKYFKNGEKYAVPALRTKKNFVEWMRNPEAPPPPDPTWEEQQTSVLHLSGDNFRETLKRKKHTLVMFYAPWCPHCKKVIPHFTATADVFKDDRKIACAAVDCIKEKNQDLCQQEAVKAYPTFHYYHYGKLAEKYDSDRTELGFTSFIRTLREGDHERLGKKKEEL", "length": 566, "header": "tr|F1SQ40-1|F1SQ40_PIG Isoform 1 of Protein disulfide-isomerase A5 OS=Sus scrofa OX=9823 GN=PDIA5 PE=1 SV=3 CANONICAL=F1SQ40-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R9R6-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ40/entry#A0A5G2R9R6-1", "sequence": { "sequence": "MLWQTWHRELGGGERLGSGGGCCTRRCCGRGSPRGDRSRPWAAAAGMARVGPAWLLLLAVWVVLPAWLSSTKVSSLIEKISDPKDLKKLLRTRNNVLVLYSKSEAAAESHLRLLSTVAQAVKGQGTICWVDCGDAESRKLCKKMKVDLSAKDKKVELFHYQDGAFHTEYNRAVTFKSIVAFLKDPKGPPLWEEDPGAKDVVHIDSEKDFRRLLKKEEKPILMMFYASWCSVCKRIMPHFQKAATQLRGQFVLAGMNVYSSEFENIKEEYGVRGYPTICYFEKGRFLFQYDSYGSTAEDIVEWLKNPQPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPCCRAWLASPLSQSSGVLAAVDATVHKALAERFHISEFPTLKYFKNGEKYAVPALRTKKNFVEWMRNPEAPPPPDPTWEEQQTSVLHLSGDNFRETLKRKKHTLVMFYAPWCPHCKKVIPHFTATADVFKDDRKIACAAVDCIKEKNQDLCQQEAVKAYPTFHYYHYGKLAEKYDSDRTELGFTSFIRTLREGDHERLGKKKEEL", "length": 554, "header": "tr|A0A5G2R9R6-1|F1SQ40_PIG Computationally mapped isoform of Protein disulfide-isomerase A5 OS=Sus scrofa OX=9823 GN=PDIA5 PE=1 SV=1 CANONICAL=F1SQ40-1" }, "locus": { "chromosome": "13", "start_pos": 137398429, "end_pos": 137300237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087595.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087595.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067340.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067340.1" } ] } }, { "isoform_ac": "F1SQ40-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ40/entry#F1SQ40-1", "sequence": { "sequence": "MLWQTWHRELGGGERLGSGGGCCTRRCCGRGSPRGDRSRPWAAAAGMARVGPAWLLLLAVWVVLPAWLSSTKVSSLIEKISDPKDLKKLLRTRNNVLVLYSKSEAAAESHLRLLSTVAQAVKGQGTICWVDCGDAESRKLCKKMKVDLSAKDKKVELFHYQDGAFHTEYNRAVTFKSIVAFLKDPKGPPLWEEDPGAKDVVHIDSEKDFRRLLKKEEKPILMMFYASWCSVCKRIMPHFQKAATQLRGQFVLAGMNVYSSEFENIKEEYGVRGYPTICYFEKGRFLFQYDSYGSTAEDIVEWLKNPQPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFENAAEVLHGEADSSGVLAAVDATVHKALAERFHISEFPTLKYFKNGEKYAVPALRTKKNFVEWMRNPEAPPPPDPTWEEQQTSVLHLSGDNFRETLKRKKHTLVMFYAPWCPHCKKVIPHFTATADVFKDDRKIACAAVDCIKEKNQDLCQQEAVKAYPTFHYYHYGKLAEKYDSDRTELGFTSFIRTLREGDHERLGKKKEEL", "length": 566, "header": "tr|F1SQ40-1|F1SQ40_PIG Isoform 1 of Protein disulfide-isomerase A5 OS=Sus scrofa OX=9823 GN=PDIA5 PE=1 SV=3 CANONICAL=F1SQ40-1" }, "locus": { "chromosome": "13", "start_pos": 137398429, "end_pos": 137300237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012984.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012984.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012642.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012642.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R9R6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9R6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518582", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518582", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q14554-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "PDIA5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARAGPAWLLLAIWVVLPSWLSSAKVSSLIERISDPKDLKKLLRTRNNVLVLYSKSEVAAENHLRLLSTVAQAVKGQGTICWVDCGDAESRKLCKKMKVDLSPKDKKVELFHYQDGAFHTEYNRAVTFKSIVAFLKDPKGPPLWEEDPGAKDVVHLDSEKDFRRLLKKEEKPLLIMFYAPWCSMCKRMMPHFQKAATQLRGHAVLAGMNVYSSEFENIKEEYSVRGFPTICYFEKGRFLFQYDNYGSTAEDIVEWLKNPQPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFEKAAEALHGEADSSGVLAAVDATVNKALAERFHISEFPTLKYFKNGEKYAVPVLRTKKKFLEWMQNPEAPPPPEPTWEEQQTSVLHLVGDNFRETLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQEAVKGYPTFHYYHYGKFAEKYDSDRTELGFTNYIRALREGDHERLGKKKEEL", "length": 519 }, "evidence": [ { "id": "F1SQ40", "url": "https://omabrowser.org/oma/group/F1SQ40/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2KIL5-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "PDIA5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARVVPAWLLLPLAVWVVLPTWLSSAKFSSLIERISDPKDLKKLLRTRNNVLVLYSKSEAAAESHLKLLSTVAQAVKGQGTICWVDCGDAESRKLCKKMKVDLSAKDKKVELFHYQDGAFHTEYNRAVTFKSIVAFLKDPKGPPLWEEDPGAKDVVHIDNEKDFRRLLKKEEKPILMMFYAPWCSVCKRIMPHFQKAATQLRGQFVLAGMNVYPSEFENIKEEYSVRGYPTICYFEKGRFLFQYDSYGSTAEDIVEWLKNPQPPQPQVPETPWADEGGSVYHLSDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGEGDSSGVLAAVDATVNKALAERFHIAEFPTLKYFKNGEKYAVPALRTKKSFIEWMRNPESPPPPDPAWEEQQTSVLHLSGDNFRETLKRKKHALVMFYAPWCPHCKKAIPHFTAAADAFKDDRKIACAAIDCVKENNKDLCQQEAVKAYPTFHYYHYGKFVEKYDTNPTELGFTSFIRTLREGDHERLGKKKEEL", "length": 521 }, "evidence": [ { "id": "F1SQ40", "url": "https://omabrowser.org/oma/group/F1SQ40/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5I0H9-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "Pdia5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARAWGLLLAIGVILPTWLSSTKVSSLIERISDPKDLKKLLRTRNNVLVLYSESEVAAESHLKLLSTVAQAVKGQGTICWVDCGDAESRKLCKKMKVDLSPKDKKIELFHYQDGAFHMQYDRAVTLKSIVAFLKDPKGPPLWEEDPGAKDVVHIDSEKDFRRLLKKEEKPLLMMFYAPWCSMCKRIMPHFQKAATQVRGHTVLAGMNVYPPEFENIKEEYNVRGYPTICYFEKGRFLFQYENYGSTAEDIVEWLKNPQPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATINEALAERFHISAFPTLKYFKNGEQQAVPALRTKKKFIEWMQNPEAPPPPEPTWEEQQTSVLHLVGDNFRETLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKDDRKIACAAVDCVKDKNQDLCQQESVKAYPTFHYYHYGKLVEKYESDRTELGFTSFIRTLREGDLKRLEKRREDL", "length": 517 }, "evidence": [ { "id": "F1SQ40", "url": "https://omabrowser.org/oma/group/F1SQ40/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q921X9-1", "protein_name": "Protein disulfide-isomerase A5", "gene_name": "Pdia5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARAWGLLLAIGVVLPTWLSSTKVSSLIERISDPKDLKKLLRTRNNVLVLYSESEVAAESHLKLLSTVAQAVKGQGTVCWVDCGDAESRKLCKKMKVDLSPKDKKIELFHYQDGAFHMQYDRAVTLKSIVAFLKDPKGPPLWEEDPGAKDVVHIDSEKDFRRLLKREEKPLLMMFYAPWCSMCKRIMPHFQKAATQVRGHIVLAGMNVYPSEFENIKEEYNVRGYPTICYFEKGRFLFPYENYGSTAEDIVEWLKNPLPPQPQVPETPWADEGGSVYHLTDEDFDQFVKEHSSVLVMFHAPWCGHCKKMKPEFESAAEVLHGDAESSGVLAAVDATVNEALAGRFHISAFPTLKYFKNGEQQAVPALRTKKKFIEWMQNPEAPPPPEPTWEEQQTSVLHLVGDNFRDTLKKKKHTLVMFYAPWCPHCKKVIPHFTATADAFKEDRKIACAAVDCVKDKNQDLCQQEAVKAYPTFHYYHYGKLVEKYESDRTELGFTSFIRTLREGDLKRLEKRREEL", "length": 517 }, "evidence": [ { "id": "F1SQ40", "url": "https://omabrowser.org/oma/group/F1SQ40/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VJZ1-1", "protein_name": "Thioredoxin domain-containing protein", "gene_name": "anon-WO0118547.80", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MWITGQFVFLLLVALVAAKSKTSAVQDDIAEYKDFKKLLRTKNNVLALYVTSAKSAAAELKIFREAAEAIRGTGTMLLLDCGQQDRKKLCKKLKVSPDPYAIKHYKDGDFHKDYDRQLSVSSMITFMRDPSGDLPWEEDPAGKDVLHFSDAASFTKHLRKDIRPMLVMFYVPWCGFCKKMKPEYGKASTELKTKGGYILAAMNVERQENAPIRKMFNITGFPTLIYFENGKLRFTYEGENNKEALVSFMLNPNAKPTPKPKEPEWSADTNSEIVHLTSQGFEPALKDEKSALVMFYAPWCGHCKRMKPEYEKAALEMKQKKIPGLLAALDATKEPSIAEKYKVKGYPTVKFFSNGVFKFEVNVREASKIVEFMRDPKEPPPPPPPEKSWEEEEDSKEVLFLDDDNFSSTLKRKKHALVMFYAPWCGHCKHTKPEFTAAATALQDDPRIAFVAIDCTKLAALCAKYNVRGYPTILYFSYLKTKLDYNGGRTSKDFIAYMNNPPTSADRTEL", "length": 510 }, "evidence": [ { "id": "F1SQ40", "url": "https://omabrowser.org/oma/group/F1SQ40/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein disulfide isomerase activity", "id": "GO:0003756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003756", "evidence": [ { "database": "UniProtKB", "id": "F1SQ40", "url": "https://www.uniprot.org/uniprotkb/F1SQ40" } ], "pmid": "" }, { "name": "protein-disulfide reductase activity", "id": "GO:0015035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015035", "evidence": [ { "database": "UniProtKB", "id": "F1SQ40", "url": "https://www.uniprot.org/uniprotkb/F1SQ40" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SQ40", "url": "https://www.uniprot.org/uniprotkb/F1SQ40" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F1SQ40", "url": "https://www.uniprot.org/uniprotkb/F1SQ40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ40" }, { "id": "PS51352", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51352" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioredoxin", "eco_id": "ECO_0000259", "start_pos": 181, "end_pos": 308, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM15-1", "uniprot_ac": "F1SM15", "uniprot_id": "F1SM15_PIG", "mass": { "chemical_mass": 127629.0, "monoisotopic_mass": 127629.0 }, "refseq": {}, "gene_names": [ { "name": "TRPM8", "type": "recommended", "evidence": [ { "id": "F1SM15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ] } ], "protein_names": [ { "name": "Transient receptor potential cation channel subfamily M member 8", "type": "synonym", "evidence": [ { "id": "F1SM15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM15/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRPM8", "url": "https://www.uniprot.org/uniprotkb/F1SM15", "locus": { "chromosome": "15", "start_pos": 134267970, "end_pos": 134145943, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016314", "url": "https://www.ensembl.org/id/ENSSSCG00000016314" } ] } } ], "crossref": [ { "id": "F1SM15", "url": "https://alphafold.ebi.ac.uk/entry/F1SM15", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016314", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016314", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR005821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041491", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041491", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057366", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057366", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13800", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13800", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13800:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13800:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18139", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18139", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23317", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23317", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25508", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25508", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3295583", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3295583", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R9Z2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Z2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Z2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDG2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDG2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFC8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FFC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FFC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM15-1", "url": "https://www.uniprot.org/uniprotkb/F1SM15-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFKGARLSMRNRRNGMLDSTRTLYSSASRSTDVSYSESDLVNFIQANFKKRECVFFTKDSKATENVCKCGYAQSQHIEGTQINQNEKWNYKKHTKEFPTDAFGDIQFETLGKRGKYIRLSCDTDAETLYELLTQHWHLKTPHLVISVTGGAKNFALKPRMRKIVSRLIYIAQSKGAWILTGGTHYGLMKYIGEVVRDNTISRNSEENIVAIGIAAWGMVSNRDTLIRTCDVEGYFSAQYIMDDFKRDPLYILDNNHTHLLLVDNGGHGHPTVEAKLRNQLEKYISERTIQDSNYGGKIPIVCFAQGGGKETLKAINTSIKSKIPCVVVEGSGQIADVIASLVEVEDALTSSVIKEKLVRFLPRTVSRLPEEETESWIKWLKEILESSHLLTVIKIEEAGDEIVSNAISYALYKAFSTNEQDKDNWNGQLKLLLEWNQLDLANDEIFTNDRRWESADLQEVMFTALIKDRPKFVRLFLENGLNLRKFLTNDVLTELFSNHFSTLVYRNLQIAKNSYNDALLTFVWKLVANFRRGFRKEDRNSRDELDIELHDVSPITRHPLQALFIWAILQNKKELSKVIWEQTRGCTLAALGASKLLKTLAKVKNDINAAGESEELANEYETRAVELFTECYSSDEDLAEQLLVYSCEAWGGSNCLELAVEATDQHFIAQPGVQNFLSKQWYGEISRDTKNWKIILCLFIIPLVGCGFVSFRKKPLDKRRQLLWSYVAFFTSPFVVFSWNVVFYIAFLLLFAYVLLMDFHSVPHPPELVLYALVFVLFCDEVRQWYMNGVNYFTDLWNVMDTLGLFYFIAGIVFRLHPSNRTSLYSGRVIFCLDYIIFTLRLIHIFTVSRNLGPKIIMLQRMLIDVFFFLFLFAVWMVAFGVARQGILRQNEHRWRWIFRSVIYEPYLAMFGQVPSDVDGTTYDFSHCTFTGNESKPLCVELDEHNLPRFPEWITIPLVCIYMLSTNILLVNLLVAMFGYTVGTVQENNDQVWKFQRYFLVQEYCSRLNIPFPFVVFAYFYMVVKKCFRCCCKERSTESSACCFKNEDNKTLAWEGVMKENYLVKINTKANDTSEEMRHRFRQLDTKLNDLKGLLKEIANKIK", "length": 1104, "header": "tr|F1SM15-1|F1SM15_PIG Isoform 1 of Transient receptor potential cation channel subfamily M member 8 OS=Sus scrofa OX=9823 GN=TRPM8 PE=4 SV=3 CANONICAL=F1SM15-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R9Z2-1", "url": "https://www.uniprot.org/uniprotkb/F1SM15/entry#A0A5G2R9Z2-1", "sequence": { "sequence": "MKSLPPVNLTLLRENVCKCGYAQSQHIEGTQINQNEKWNYKKHTKEFPTDAFGDIQFETLGKRGKYIRLSCDTDAETLYELLTQHWHLKTPHLVISVTGGAKNFALKPRMRKIVSRLIYIAQSKGAWILTGGTHYGLMKYIGEVVRDNTISRNSEENIVAIGIAAWGMVSNRDTLIRTCDVEVQAGRDGVC", "length": 191, "header": "tr|A0A5G2R9Z2-1|F1SM15_PIG Computationally mapped isoform of Transient receptor potential cation channel subfamily M member 8 OS=Sus scrofa OX=9823 GN=TRPM8 PE=4 SV=1 CANONICAL=F1SM15-1" }, "locus": { "chromosome": "15", "start_pos": 134198063, "end_pos": 134192997, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067067.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067067.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070955.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070955.1" } ] } }, { "isoform_ac": "A0A5G2RDG2-1", "url": "https://www.uniprot.org/uniprotkb/F1SM15/entry#A0A5G2RDG2-1", "sequence": { "sequence": "MKYIGEVVRDNTISRNSEENIVAIGIAAWGMVSNRDTLIRTCDVEGYFSAQYIMDDFKRDPLYILDNNHTHLLLVDNGGHGHPTVEAKLRNQLEKYISERTIQDSNYGGKIPIVCFAQGGGKETLKAINTSIKSKIPCVVVEGSGQIADVIASLVEVEDALTSSVIKEKLVRFLPRTVSRLPEEETESWIKWLKEILESSHLLTVIKIEEAGDEIVSNAISYALYKAFSTNEQDKDNWNGQLKLLLEWNQLDLANDEIFTNDRRWESADLQEVMFTALIKDRPKFVRLFLENGLNLRKFLTNDVLTELFSNHFSTLVYRNLQIAKNSYNDALLTFVWKLVANFRRGFRKEDRNSRDELDIELHDVSPITRHPLQALFIWAILQNKKELSKVIWEQTRGCTLAALGASKLLKTLAKVKNDINAAGESEELANEYETRAVELFTECYSSDEDLAEQLLVYSCEAWGGSNCLELAVEATDQHFIAQPGVQWYMNGVNYFTDLWNVMDTLGLFYFIAGIVFRLHPSNRTSLYSGRVIFCLDYIIFTLRLIHIFTVSRNLGPKIIMLQRMLIDVFFFLFLFAVWMVAFGVARQGILRQNEHRWRWIFRSVIYEPYLAMFGQVPSDVDGTTYDFSHCTFTGNESKPLCVELDEHNLPRFPEWITIPLVCIYMLSTNILLVNLLVAMFGYTVGTVQENNDQVWKFQRYFLVQEYCSRLNIPFPFVVFAYFYMVVKKCFRCCCKERSTESSACCFKNEDNKTLAWEGVMKENYLVKINTKANDTSEEMRHRFRQLDTKLNDLKGLLKEIANKIK", "length": 806, "header": "tr|A0A5G2RDG2-1|F1SM15_PIG Computationally mapped isoform of Transient receptor potential cation channel subfamily M member 8 OS=Sus scrofa OX=9823 GN=TRPM8 PE=4 SV=2 CANONICAL=F1SM15-1" }, "locus": { "chromosome": "15", "start_pos": 134261951, "end_pos": 134197902, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084582.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084582.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072418.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072418.2" } ] } }, { "isoform_ac": "A0A8W4FFC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SM15/entry#A0A8W4FFC8-1", "sequence": { "sequence": "MREEMSFKGARLSMRNRRNGMLDSTRTLYSSASRSTDVSYSESDLVNFIQANFKKRECVFFTKDSKATENVCKCGYAQSQHIEGTQINQNEKWNYKKHTKEFPTDAFGDIQFETLGKRGKYIRLSCDTDAETLYELLTQHWHLKTPHLVISVTGGAKNFALKPRMRKIVSRLIYIAQSKGAWILTGGTHYGLMKYIGEVVRDNTISRNSEENIVAIGIAAWGMVSNRDTLIRTCDVEVQAGRDGVC", "length": 246, "header": "tr|A0A8W4FFC8-1|F1SM15_PIG Computationally mapped isoform of Transient receptor potential cation channel subfamily M member 8 OS=Sus scrofa OX=9823 GN=TRPM8 PE=4 SV=1 CANONICAL=F1SM15-1" }, "locus": { "chromosome": "15", "start_pos": 134198063, "end_pos": 134156436, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097164.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097164.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077945.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077945.1" } ] } }, { "isoform_ac": "F1SM15-1", "url": "https://www.uniprot.org/uniprotkb/F1SM15/entry#F1SM15-1", "sequence": { "sequence": "MSFKGARLSMRNRRNGMLDSTRTLYSSASRSTDVSYSESDLVNFIQANFKKRECVFFTKDSKATENVCKCGYAQSQHIEGTQINQNEKWNYKKHTKEFPTDAFGDIQFETLGKRGKYIRLSCDTDAETLYELLTQHWHLKTPHLVISVTGGAKNFALKPRMRKIVSRLIYIAQSKGAWILTGGTHYGLMKYIGEVVRDNTISRNSEENIVAIGIAAWGMVSNRDTLIRTCDVEGYFSAQYIMDDFKRDPLYILDNNHTHLLLVDNGGHGHPTVEAKLRNQLEKYISERTIQDSNYGGKIPIVCFAQGGGKETLKAINTSIKSKIPCVVVEGSGQIADVIASLVEVEDALTSSVIKEKLVRFLPRTVSRLPEEETESWIKWLKEILESSHLLTVIKIEEAGDEIVSNAISYALYKAFSTNEQDKDNWNGQLKLLLEWNQLDLANDEIFTNDRRWESADLQEVMFTALIKDRPKFVRLFLENGLNLRKFLTNDVLTELFSNHFSTLVYRNLQIAKNSYNDALLTFVWKLVANFRRGFRKEDRNSRDELDIELHDVSPITRHPLQALFIWAILQNKKELSKVIWEQTRGCTLAALGASKLLKTLAKVKNDINAAGESEELANEYETRAVELFTECYSSDEDLAEQLLVYSCEAWGGSNCLELAVEATDQHFIAQPGVQNFLSKQWYGEISRDTKNWKIILCLFIIPLVGCGFVSFRKKPLDKRRQLLWSYVAFFTSPFVVFSWNVVFYIAFLLLFAYVLLMDFHSVPHPPELVLYALVFVLFCDEVRQWYMNGVNYFTDLWNVMDTLGLFYFIAGIVFRLHPSNRTSLYSGRVIFCLDYIIFTLRLIHIFTVSRNLGPKIIMLQRMLIDVFFFLFLFAVWMVAFGVARQGILRQNEHRWRWIFRSVIYEPYLAMFGQVPSDVDGTTYDFSHCTFTGNESKPLCVELDEHNLPRFPEWITIPLVCIYMLSTNILLVNLLVAMFGYTVGTVQENNDQVWKFQRYFLVQEYCSRLNIPFPFVVFAYFYMVVKKCFRCCCKERSTESSACCFKNEDNKTLAWEGVMKENYLVKINTKANDTSEEMRHRFRQLDTKLNDLKGLLKEIANKIK", "length": 1104, "header": "tr|F1SM15-1|F1SM15_PIG Isoform 1 of Transient receptor potential cation channel subfamily M member 8 OS=Sus scrofa OX=9823 GN=TRPM8 PE=4 SV=3 CANONICAL=F1SM15-1" }, "locus": { "chromosome": "15", "start_pos": 134261951, "end_pos": 134186122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017767.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017767.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017286.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017286.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R9Z2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9Z2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3295583", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3295583", "resource": "Reactome", "description": "TRP channels" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "monoatomic cation transmembrane transport", "id": "GO:0098655", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098655", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" }, { "name": "calcium ion transmembrane transport", "id": "GO:0070588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070588", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" }, { "name": "positive regulation of cold-induced thermogenesis", "id": "GO:0120162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120162", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" }, { "name": "thermoception", "id": "GO:0050955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050955", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "monoatomic ion channel activity", "id": "GO:0005216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005216", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" }, { "name": "ligand-gated calcium channel activity", "id": "GO:0099604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099604", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" }, { "name": "membrane raft", "id": "GO:0045121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045121", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SM15", "url": "https://www.uniprot.org/uniprotkb/F1SM15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1050, "end_pos": 1052, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1072, "end_pos": 1074, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 821, "end_pos": 823, "annotation": "n_glycosylation_sequon" }, { "start_pos": 934, "end_pos": 936, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SM15-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1104, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SM15-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SM15" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SM15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM15" }, { "id": "PF23317", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23317" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calcium channel YVC1-like C-terminal transmembrane", "eco_id": "ECO_0000259", "start_pos": 745, "end_pos": 892, "start_aa": "Tyr", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SM15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM15" }, { "id": "PF18139", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18139" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRPM SLOG", "eco_id": "ECO_0000259", "start_pos": 116, "end_pos": 366, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SM15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM15" }, { "id": "PF25508", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25508" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRPM-like", "eco_id": "ECO_0000259", "start_pos": 445, "end_pos": 513, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1050, "end_pos": 1052 }, { "start_pos": 1072, "end_pos": 1074 }, { "start_pos": 256, "end_pos": 258 }, { "start_pos": 317, "end_pos": 319 }, { "start_pos": 821, "end_pos": 823 }, { "start_pos": 934, "end_pos": 936 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHY0-1", "uniprot_ac": "F1SHY0", "uniprot_id": "F1SHY0_PIG", "mass": { "chemical_mass": 153118.0, "monoisotopic_mass": 153118.0 }, "refseq": { "ac": "XP_020957098", "name": "son of sevenless homolog 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957098" }, "gene_names": [ { "name": "SOS2", "type": "recommended", "evidence": [ { "id": "F1SHY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" } ] }, { "name": "SOS2", "type": "synonym", "evidence": [ { "id": "XP_020957098", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957098" } ] } ], "protein_names": [ { "name": "SOS Ras/Rho guanine nucleotide exchange factor 2", "type": "synonym", "evidence": [ { "id": "F1SHY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY0/entry#names_and_taxonomy" } ] }, { "name": "son of sevenless homolog 2", "type": "synonym", "evidence": [ { "id": "XP_020957098", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957098" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHY0", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SOS2", "url": "https://www.uniprot.org/uniprotkb/F1SHY0", "locus": { "chromosome": "1", "start_pos": 179907590, "end_pos": 180015220, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005015", "url": "https://www.ensembl.org/id/ENSSSCG00000005015" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005015", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005015", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00155", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00155", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01261", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01261", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06224", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06224", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22914", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22914", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22915", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22915", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156602", "url": "https://www.ncbi.nlm.nih.gov/gene/100156602", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156602", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156602", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KNTHRED", "url": "https://omabrowser.org/oma/group/KNTHRED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHY0", "url": "https://www.orthodb.org/?gene=F1SHY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23113:SF150", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23113:SF150", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00617", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00618", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00618", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193648", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416482", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8983432", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8983432", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020957098", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957098", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2REF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHY0", "url": "https://www.uniprot.org/uniprotkb/F1SHY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQQAPQPYEFFSEENSPKWRGLLVSALRKVQEQVHPNLSANEESLYYIEELIFQLLNKLCLAQPRTVQDVEERVQKTFPHPIDKWAIADAQSAIEKRKRRNPLLLPVDKIHPSLKEVLGYKVDYHVSLYIVAVLEYISADILKLAGNYVFNIRHYEISQQDIKVSMCADKVLMDMFDQDDIGLVSLCEDEPSSSGELNYYDLVRTEIAEERQYLRELNMIIKVFREAFLSDRKLFKPSDIEKIFSNILDIHELTVKLLGLVEDTVEMTDESSPHPLAGSCFEDLAEEQAFDPYETLSQDILSPEFNEHFSKLMARPAVALHFQSIADGFKEAVRYVLPRLMLVPVYHCWHYFELLKQLKACSEEQEDRECLNQAITALLNLQGSMDRIYKQHSPRRRPGDPVCPFYNRQLRSKHLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGPLTRVGAKHERHIFLFDGLMISCKPNHSQSRLPGYSNAEYRLKEKFVMRKIQICDKEDTCEYKHAFELVSKDENSIIFAAKSAEEKSNWMAALISLHYRSTLDRMLDSVLLKEENEQPLRLPSPEVYRFVVKDSEENIVFEDNLQSRSGIPIIKGGTVVKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLLIERFEIPEPEPTEADKLAVEKGEQPISADLKRFRKEYVQPVQLRILNVFRHWVEHHFYDFERDLELLERLESFISSVRGKAMKKWVESIAKIIKRKKQAQANGISHNITFESPPPPIEWHISRPGQFETFDLMTLHPIEIARQLTLLESDLYRKVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVEAENFEERVAVLSRIIEILQVFQDLNNFNGVLEIVSAVNSVSVYRLDHTFEALQERKRKILDEAVELSQDHFKKYLVKLKSINPPCVPFFGIYLTNILKTEEGNNDFLKKKGKDLINFSKRRKVAEITGEIQQYQNQPYCLRIEPEMRRFFENLNPMGNSSEKEFTDYLFNKSLEIEPRNCKQPPRFPRKSTFSLKSPGIRPNTGRHGSTSGTLRGHPTPLEREPCKISFSRIAETDLESTVSAPTSPNTPSTPPVSASSDLSVFLDVDLNSSCGSNSIFAPVLLPHSKSFFSSCGSLHKLSEEPLIPPPLPPRKKFDHDASNSKGNMKSDDDPPAIPPRQPPPPKVKPRVPAPTGVFDGPLPSPPLPPPRDPLPDTPPPVPLRPPEHFINCPFTLQPPPLGHLHRDPDWFRDVSMCPNSPNTPPSTPSPRVPRRCYVLSSSQNNLAHPQAPPIPPRQNSSPHLPKLPPKTYKRELSHPPLYRLPLLENAETPQ", "length": 1332, "header": "tr|F1SHY0-1|F1SHY0_PIG Isoform 1 of SOS Ras/Rho guanine nucleotide exchange factor 2 OS=Sus scrofa OX=9823 GN=SOS2 PE=4 SV=3 CANONICAL=F1SHY0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2REF4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHY0/entry#A0A5G2REF4-1", "sequence": { "sequence": "MQQAPQPYEFFSEENSPKWRGLLVSALRKVQEQVHPNLSANEESLYYIEELIFQLLNKLCLAQPRTVQDVEERVQKTFPHPIDKWAIADAQSAIEKRKRRNPLLLPVDKIHPSLKEVLGYKVDYHVSLYIVAVLEYISADILKLAGNYVFNIRHYEISQQDIKVSMCADKVLMDMFDQDDIGLVSLCEDEPSSSGELNYYDLVRTEIAEERQYLRELNMIIKVFREAFLSDRKLFKPSDIEKIFSNILDIHELTVKLLGLVEDTVEMTDESSPHPLAGSCFEDLAEEQAFDPYETLSQDILSPEFNEHFSKLMARPAVALHFQQLKACSEEQEDRECLNQAITALLNLQGSMDRIYKQHSPRRRPGDPVCPFYNRQLRSKHLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGPLTRVGAKHERHIFLFDGLMISCKPNHSQSRLPGYSNAEYRLKEKFVMRKIQICDKEDTCEYKHAFELVSKDENSIIFAAKSAEEKSNWMAALISLHYRSTLDRMLDSVLLKEENEQPLRLPSPEVYRFVVKDSEENIVFEDNLQSRSGIPIIKGGTVVKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLLIERFEIPEPEPTEADKLAVEKGEQPISADLKRFRKEYVQPVQLRILNVFRHWVEHHFYDFERDLELLERLESFISSVRGKAMKKWVESIAKIIKRKKQAQANGISHNITFESPPPPIEWHISRPGQFETFDLMTLHPIEIARQLTLLESDLYRKVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVEAENFEERVAVLSRIIEILQVFQDLNNFNGVLEIVSAVNSVSVYRLDHTFEALQERKRKILDEAVELSQDHFKKYLVKLKSINPPCVPFFGIYLTNILKTEEGNNDFLKKKGKDLINFSKRRKVAEITGEIQQYQNQPYCLRIEPEMRRFFENLNPMGNSSEKEFTDYLFNKSLEIEPRNCKQPPRFPRKSTFSLKSPGIRPNTGRHGSTSGTLRGHPTPLEREPCKISFSRIAETDLESTVSAPTSPNTPSTPPVSASSDLSVFLDVDLNSSCGSNSIFAPVLLPHSKSFFSSCGSLHKLSEEPLIPPPLPPRKKFDHDASNSKGNMKSDDDPPAIPPRQPPPPKVKPRVPAPTGVFDGPLPSPPLPPPRDPLPDTPPPVPLRPPEHFINCPFTLQPPPLGHLHRDPDWFRDVSMCPNSPNTPPSTPSPRVPRRCYVLSSSQNNLAHPQAPPIPPRQNSSPHLPKLPPKTYKRELSHPPLYRLPLLENAETPQ", "length": 1299, "header": "tr|A0A5G2REF4-1|F1SHY0_PIG Computationally mapped isoform of SOS Ras/Rho guanine nucleotide exchange factor 2 OS=Sus scrofa OX=9823 GN=SOS2 PE=4 SV=1 CANONICAL=F1SHY0-1" }, "locus": { "chromosome": "1", "start_pos": 180014616, "end_pos": 179908799, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081566.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081566.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073001.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073001.1" } ] } }, { "isoform_ac": "F1SHY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHY0/entry#F1SHY0-1", "sequence": { "sequence": "MQQAPQPYEFFSEENSPKWRGLLVSALRKVQEQVHPNLSANEESLYYIEELIFQLLNKLCLAQPRTVQDVEERVQKTFPHPIDKWAIADAQSAIEKRKRRNPLLLPVDKIHPSLKEVLGYKVDYHVSLYIVAVLEYISADILKLAGNYVFNIRHYEISQQDIKVSMCADKVLMDMFDQDDIGLVSLCEDEPSSSGELNYYDLVRTEIAEERQYLRELNMIIKVFREAFLSDRKLFKPSDIEKIFSNILDIHELTVKLLGLVEDTVEMTDESSPHPLAGSCFEDLAEEQAFDPYETLSQDILSPEFNEHFSKLMARPAVALHFQSIADGFKEAVRYVLPRLMLVPVYHCWHYFELLKQLKACSEEQEDRECLNQAITALLNLQGSMDRIYKQHSPRRRPGDPVCPFYNRQLRSKHLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGPLTRVGAKHERHIFLFDGLMISCKPNHSQSRLPGYSNAEYRLKEKFVMRKIQICDKEDTCEYKHAFELVSKDENSIIFAAKSAEEKSNWMAALISLHYRSTLDRMLDSVLLKEENEQPLRLPSPEVYRFVVKDSEENIVFEDNLQSRSGIPIIKGGTVVKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLLIERFEIPEPEPTEADKLAVEKGEQPISADLKRFRKEYVQPVQLRILNVFRHWVEHHFYDFERDLELLERLESFISSVRGKAMKKWVESIAKIIKRKKQAQANGISHNITFESPPPPIEWHISRPGQFETFDLMTLHPIEIARQLTLLESDLYRKVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVEAENFEERVAVLSRIIEILQVFQDLNNFNGVLEIVSAVNSVSVYRLDHTFEALQERKRKILDEAVELSQDHFKKYLVKLKSINPPCVPFFGIYLTNILKTEEGNNDFLKKKGKDLINFSKRRKVAEITGEIQQYQNQPYCLRIEPEMRRFFENLNPMGNSSEKEFTDYLFNKSLEIEPRNCKQPPRFPRKSTFSLKSPGIRPNTGRHGSTSGTLRGHPTPLEREPCKISFSRIAETDLESTVSAPTSPNTPSTPPVSASSDLSVFLDVDLNSSCGSNSIFAPVLLPHSKSFFSSCGSLHKLSEEPLIPPPLPPRKKFDHDASNSKGNMKSDDDPPAIPPRQPPPPKVKPRVPAPTGVFDGPLPSPPLPPPRDPLPDTPPPVPLRPPEHFINCPFTLQPPPLGHLHRDPDWFRDVSMCPNSPNTPPSTPSPRVPRRCYVLSSSQNNLAHPQAPPIPPRQNSSPHLPKLPPKTYKRELSHPPLYRLPLLENAETPQ", "length": 1332, "header": "tr|F1SHY0-1|F1SHY0_PIG Isoform 1 of SOS Ras/Rho guanine nucleotide exchange factor 2 OS=Sus scrofa OX=9823 GN=SOS2 PE=4 SV=3 CANONICAL=F1SHY0-1" }, "locus": { "chromosome": "1", "start_pos": 180014616, "end_pos": 179908799, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005531.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005531.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005393.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005393.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1265, "start_aa": "Thr", "end_pos": 1265, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1265", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2REF4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REF4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156602", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156602", "resource": "KEGG Pathway" }, { "id": "R-SSC-193648", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193648", "resource": "Reactome", "description": "NRAGE signals death through JNK" }, { "id": "R-SSC-416482", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416482", "resource": "Reactome", "description": "G alpha (12/13) signalling events" }, { "id": "R-SSC-8983432", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8983432", "resource": "Reactome", "description": "Interleukin-15 signaling" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0M1M3-1", "protein_name": "SOS Ras/Rho guanine nucleotide exchange factor 2", "gene_name": "Sos2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFSPHIRVLPSRAAVTAPGSPRAARIRFVCRDSDAAAECVWNSRPAPAHVPRRDRLPSRPPGPAPGAWARSAARMLGAGLLPRLGRASAGPSRAAAAGTRRSAAARGAGGAASAVHAGHARPLGPEGPLEVQEQVHPTLSANEESLYYIEELIFQLLNKLCLAQPRTVQDVEERVQKTFPHPIDKWAIADAQSAIEKRKRRNPLLLPVDKIHPSLKEVLGYKVDYHVSLYIVAVLEYISADILKLAGNYVFNIRHYEISQQDIKVSMCADKVLMDMFDQDDDIGLVSLCEEEPCSSGELNYYDLVRTEIAEERQYLRELNMIIKVFREAFLSDKKLFKSSEIEKIFSNISDIHELTVKLLGLIEDTVEMTDESSPHPLAGSCFEDLAEEQAFDPYETLSQDILAPEFNDHFSKLMARPAVALHFQSIADGFKEAVRYVLPRLMLVPVYHCWHYFELLKQLKACSEEQEDRECLNQAITALMNLQGSMDRIYKQHSPRRRPGDPVCLFYNRQLRSKHLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGPLTRIGAKHERHIFLFDGLMISCKPNHCQTRLPGYSSAEYRLKEKFVMRKIQICDKEDACEYKHAFELVSKDENSVIFAAKSAEEKNNWMAALISLHYRSTLDRMLDSVLLKEENEQPLRLPRPDVYRFVVTDSEENIVFEDNLQSRSGIPIIKGGTVVKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLLIERFEIPDPEPTEADKLALEKGEQPISADLKRFRKEYVQPVQLRVLNVFRHWVEHHFYDFERDLELLERLEAFISSVRGKAMKKWVESIAKIIKRKKQAQANGVSHNITFESPPPPVEWHISRAGQSETFDLMTLHPIEIARQLTLLESDLYRRVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVEAENFEERVAVLSRIVEILQVFQDLNNFNGVLEIVSAVNSVSVYRLDHTFEALQERKRRVLDDAVELSQDHFKKYLVKLKSINPPCVPFFGIYLTNILKTEEGNSDFLKRKGKDLINFSKRRKVAEITGEIQQYQNQPYCLRTEPEMRRFFENLNPMGLLSEKEFTDYLFNKSHEIEPRNCKQPPRFPRKSTFSLKSPGIRPNASRHGSTSGTFRGHPTPLEREPYKISFSRIAETELESTVSAPTSPNTPSTPPVSASSDHSVFLDVDLNSSCGSNTIFAPVLLPHSKSFFSSCGSLHKLSEEPLVPPPLPPRKKFDHDAPNSKGAMKSDDDPPAIPPRQPPPPKVKPRAPVLTGTFEGPVPSPPPPPPRDPLPDTPPPVPLRPPEHFINCPFNLQPPPLGHPHRDPDWLRDVSTCPNSPSTPPPTPSPRIPRRCHLPSPSHNNLAHPPAPPVPPRQNSSPHLPKLPPKTYKRELSHPPLYRLPLFENAETPQ", "length": 1435 }, "evidence": [ { "id": "F1SHY0", "url": "https://omabrowser.org/oma/group/F1SHY0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A7MBI3-1", "protein_name": "L-2-hydroxyglutarate dehydrogenase, mitochondrial", "gene_name": "L2HGDH", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVPALRYLGSVCGRARGIFPGGFSAAHTPASGKSRLLCQGGRRASTSSFDIVIIGGGIVGLASARALILRHPALSIGVLEKEKNLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALIYEYCNQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNGVQGLRLIQQEDIKKKEPYCRGLMAIDCPYTGIVDYRQVAFSFAKDFQEAGGSVLTNFEVEDIEMARESPSRSKDGMKYPIVIRNTKGEEVRCQYVVTCAGLYSDRISELSGCNPNPRIVPFRGDYLVLKPEKRYLVKGNIYPVPDSRFPFLGVHFTPRMDGNIWLGPNAILAFKREGYRPFDFSARDIMDIIIKSGLIKLVFQNFSYGVNEMYKACFLSATVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLIEDFVFDGGVGDIGNRILHVRNAPSPAATSSLAISGMIADEVQQRFKL", "length": 463 }, "evidence": [ { "id": "F1SHY0", "url": "https://omabrowser.org/oma/group/F1SHY0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1N8Q9-1", "protein_name": "SOS Ras/Rho guanine nucleotide exchange factor 2", "gene_name": "SOS2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQPPPQPYEFFGEENGPKWRGLFVPALRKVQQQVHPNLSAKEDSLYYIEELILQLLNKLCIAQPRTVQDVEERVQKTFPHPIDKWAIADAQSAIEKRKRRNPLLLPVDKIHPLLKEVLGYKVDYHVSLYIVAVLEYISADILKLAGNYVFNIRHFEISQQDIKVSMCADKVLMDMFDQDDIGLVSLCEDEPSSSGELNYYDLVRNEIAEERQYLRELNLIIKVFREAFLSNRKLFTPNDIDVVFSNISDIHELTVKLLGLIEDTVEMTDESSPHPLAGSCFEDLAEEQAFDPYETLSQDILSPQFHEHFNNLMAKPAVALYFQSTAEGFKEAVRYVLPRLMLIPVYHCLHYFELLQQLQECSEDEEDRECLKQAITALLNLQCSMERIYSKHSPRRRPGEPVCRFYNRQIRSKHLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTKIGAKHERHIFLFDGLMISCKTNHGQSRLPGYSNAEYRLKEKIIMRKIQIIDKDDTSEYKHAFELVSKDENSILFAAKSAEEKSNWMAALISLQYRSTLDRMLDSVLLQEENEQPLRLPSPNVYRFVVEDSEDNIVFEDNLQSRNGIPIIKGGTVVKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLLIERFEIPEPEPTEADRLAIEKGEQPISADLKRFRKEYVQPVQLRILNVFRHWVEHHFYDFERDLELLERLETFISSVRGKSMKKWVESIAKIIKRKKAQANGISHNITFESPPPPIEWHIWRVGHSEMLDLMTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENFEERVAVLSRIIEILQVFQDLNNFNGVLEIVSAMNSVSVYRLDHTFEALQERKKRVLDEAVELSQDHFKKYLAKLKSINPPCVPFFGIYLTNILKTEEGNPDFLKRQGKELINFSKRRKVAEITGEIQQYQNQPYCLRIEPEIRKFFENLNPMGKIPEKEFTDYLFNKSLEIEPRNCKQPPRFPRKTTYPLKSPGIRPNAGRHGSTSGTLRSHPLPLEKEPSKICFSRITEAEHESAVSAPTSPNTPSTPPVSASSEFSVFLDIDLNSSYGNNSIFAPVSLPQSKTFFSSWGSFPKLSDEPQNPPPLPPRKKMDQDVSNAKGSLKSDDDPPAIPPRQPPPPKIQPRAPAYSPFEQPLHSPPPPPPRDPLPDTPPPVPHRPPEHFINCPLNLQPPPVGRMHRDADWFREAGPGPSSPGTPPSTPSPRVLRRCCVIGAAHNSPGHPPAPPVPPRQNSSPQLPKLPPKTYKRELSHPPLHRLSLLENAEAPQ", "length": 1330 }, "evidence": [ { "id": "F1SHY0", "url": "https://omabrowser.org/oma/group/F1SHY0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1R019-1", "protein_name": "Son of sevenless homolog 2", "gene_name": "sos2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MQHDFSSSEENSARWRGLFVQGLRKVQVQVHPNLSAKEDALQHIEALILQLLNKLCVTQPRTIADVEDRVQKTFPNPIDKWAMGDAQNAIEKRKRRNPLLLPVDKIHPLLKEVLGYKIDYNVCLYIVAVLEYISADILKLAGNYVSNIRHYEISQQDITVSMCADKVLMDMFDQEEEMGLLSQSVEEVSSSGVLTYDDLVRLEIAEERQYLRELDLIIKVFRQAFMSNSKLFSAQDVELAFSNILEVQELTVKLLGLIEDAVEMTADGSPHPLVGSCFEDLAEEQAFDPYETLSQDILSKEFCQHFNTLMSRPTVALHFQSIAEGFKEAVQYVLPQLMMVPVYHCIHYFELLQQLQECSEEQDDRECLKQAQTALINLQCSIERIYAKHQPRRKQGEPLYRLYSRASRSKQAAIKRMNDIQKSIDGWEGKDIGQCCSQFILEGALLRAGAKHERHNFLFDGLMISCKANQSSRLPGAGSGAEFRLKEKFVLRKYRIVDREDSPEFRHAFELVGREESGAVFSARSAEEKSAWMAALVTLQYRPTLDRMLDTVLHREEQAQPLRLPSPDVYRFAIQDSEENIVFEEGAQSKTGIPIIKAGTVVKLIERLTYHMYADPNFVRTFLTTYRSFCKPQDLLTLLIERIEIPEPEPSEADREALWNGEQPMAAELQRFRREYVQPVQLRVLNVFRQWVEHHFYDFENDPELYERLEGYLISTTQLRGKSMRKWVESISKIMRRKIQMQSNGISHNITFESPPPPIEWHISRPGQVDTFDLMTLHPIEIARQLTLLESDLYRAVRPSELVGSVWTKEDKEKNSPNLLRMIRHTTNLTLWFEKCIVEAENVDERVAVFSRIIEILQVFQELNNFNGVLEIVSAINSVPVYRLDHTFEAVPERKRRILEEAVELSQDHFKKYLAKLKSINPPCVPFFGIYLTNILKTEEGNPDFLKRDGKELINFSKRRKVAEITGEIQQYQNQPYCLKVEHDIKRFFENLNPMGNMNEKDFSDYLFNKSLEIEPRNSKQPPRFPRKTTYSLKSPGVRPVRQAVGGGGTLKGHPVPLEREPPHKITFRSIAETEPETPPSLPTSPNTPTPPQSASSDFNSVFEQDFMPYGNNTIFAPVFLPQSKFQSVSCGSLHQLMSDEPLKPPPLPPRRKDTSSDKNSRSDSPPAIPPRLPPPPRLQPRVPVINGPTDGPLPSPPPPLPRDPLPDTPPPVPQRPPEIFINYPVNMQPSPGGRFHWDFTTSPSTPNTPPGTPSPRAVLPGTPSPRVPRRPCTPSVSQPILVHLPPPTPAPPIPPRHNSTSALPKLPPKTYKRELSQSSHTLSQPSLHTLSLVDNRDSNE", "length": 1341 }, "evidence": [ { "id": "F1SHY0", "url": "https://omabrowser.org/oma/group/F1SHY0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P26675-1", "protein_name": "Protein son of sevenless", "gene_name": "Sos", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFSGPSGHAHTISYGGGIGLGTGGGGGSGGSGSGSQGGGGGIGIGGGGVAGLQDCDGYDFTKCENAARWRGLFTPSLKKVLEQVHPRVTAKEDALLYVEKLCLRLLAMLCAKPLPHSVQDVEEKVNKSFPAPIDQWALNEAKEVINSKKRKSVLPTEKVHTLLQKDVLQYKIDSSVSAFLVAVLEYISADILKMAGDYVIKIAHCEITKEDIEVVMNADRVLMDMLNQSEAHILPSPLSLPAQRASATYEETVKELIHDEKQYQRDLHMIIRVFREELVKIVSDPRELEPIFSNIMDIYEVTVTLLGSLEDVIEMSQEQSAPCVGSCFEELAEAEEFDVYKKYAYDVTSQASRDALNNLLSKPGASSLTTAGHGFRDAVKYYLPKLLLVPICHAFVYFDYIKHLKDLSSSQDDIESFEQVQGLLHPLHCDLEKVMASLSKERQVPVSGRVRRQLAIERTRELQMKVEHWEDKDVGQNCNEFIREDSLSKLGSGKRIWSERKVFLFDGLMVLCKANTKKQTPSAGATAYDYRLKEKYFMRRVDINDRPDSDDLKNSFELAPRMQPPIVLTAKNAQHKHDWMADLLMVITKSMLDRHLDSILQDIERKHPLRMPSPEIYKFAVPDSGDNIVLEERESAGVPMIKGATLCKLIERLTYHIYADPTFVRTFLTTYRYFCSPQQLLQLLVERFNIPDPSLVYQDTGTAGAGGMGGVGGDKEHKNSHREDWKRYRKEYVQPVQFRVLNVLRHWVDHHFYDFEKDPMLLEKLLNFLEHVNGKSMRKWVDSVLKIVQRKNEQEKSNKKIVYAYGHDPPPIEHHLSVPNDEITLLTLHPLELARQLTLLEFEMYKNVKPSELVGSPWTKKDKEVKSPNLLKIMKHTTNVTRWIEKSITEAENYEERLAIMQRAIEVMMVMLELNNFNGILSIVAAMGTASVYRLRWTFQGLPERYRKFLEECRELSDDHLKKYQERLRSINPPCVPFFGRYLTNILHLEEGNPDLLANTELINFSKRRKVAEIIGEIQQYQNQPYCLNEESTIRQFFEQLDPFNGLSDKQMSDYLYNESLRIEPRGCKTVPKFPRKWPHIPLKSPGIKPRRQNQTNSSSKLSNSTSSVAAAAAASSTATSIATASAPSLHASSIMDAPTAAAANAGSGTLAGEQSPQHNPHAFSVFAPVIIPERNTSSWSGTPQHTRTDQNNGEVSVPAPHLPKKPGAHVWANNNSTLASASAMDVVFSPALPEHLPPQSLPDSNPFASDTEAPPSPLPKLVVSPRHETGNRSPFHGRMQNSPTHSTASTVTLTGMSTSGGEEFCAGGFYFNSAHQGQPGAVPISPHVNVPMATNMEYRAVPPPLPPRRKERTESCADMAQKRQAPDAPTLPPRDGELSPPPIPPRLNHSTGISYLRQSHGKSKEFVGNSSLLLPNTSSIMIRRNSAIEKRAAATSQPNQAAAGPISTTLVTVSQAVATDEPLPLPISPAASSSTTTSPLTPAMSPMSPNIPSHPVESTSSSYAHQLRMRQQQQQQTHPAIYSQHHQHHATHLPHHPHQHHSNPTQSRSSPKEFFPIATSLEGTPKLPPKPSLSANFYNNPDKGTMFLYPSTNEE", "length": 1596 }, "evidence": [ { "id": "F1SHY0", "url": "https://omabrowser.org/oma/group/F1SHY0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q02384-1", "protein_name": "Son of sevenless homolog 2", "gene_name": "Sos2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQQAPQPYEFFSEENSPKWRGLLVPALRKVQEQVHPTLSANEESLYYIEELIFQLLNKLCMAQPRTVQDVEERVQKTFPHPIDKWAIADAQSAIEKRKRRNPLLLPVDKIHPSLKEVLGYKVDYHVSLYIVAVLEYISADILKLAGNYVFNIRHYEISQQDIKVSMCADKVLMDMFDQDDDIGLVSLCEDEPCSSGELNYYDLVRTEIAEERQYLRELNMIIKVFREAFLLDRKLFKPSEIEKIFSNISDIHELTVKLLGLIEDTVEMTDESSPHPLAGSCFEDLAEEQAFDPYETLSQDILAPEFNDHFSKLMARPAVALHFQSIADGFKEAVRYVLPRLMLVPVYHCWHYFELLKQLKACSEEQEDKECLNQAITALMNLQGSMDRIYKQHSPRRRPGDPVCLFYNRQLRSKHLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGPLTRIGAKHERHIFLFDGLMISCKPNHGQTRLPGYSSAEYRLKEKFVMRKIQICDKEDACEYRHAFELVSKDENSVIFAAKSAEEKNNWMAALISLHYRSTLDRMLDSVLLKEENEQPLRLPSPDMYRFVVTDSEENIVFEDNLQSRSGIPIIKGGTVVKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLNLLIERFEIPEPEPTEADKLALEKGEQPISADLKRFRKEYVQPVQLRVLNVFRHWVEHHYYDFERDLELLERLESFISSVRGKAMKKWVESIAKIIKRKKQAQANGISHNITFESSPPPVEWHISRTGQFETFDLMTLHPIEIARQLTLLESDLYRKVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVEAENFEERVAVLSRIVEILQVFQDLNNFNGVLEIVSAVNSVSVYRLDHTFEALQERKRRILDDAVELSQDHFKKYLVKLKSINPPCVPFFGIYLTNILKTEEGNSDFLKRKGKDLINFSKRRKVAEITGEIQQYQNQPYCLRTEPEMRRFFENLNPMGILSEKEFTDYLFNKSLEIEPRNCKQPPRFPRKSTFSLKSPGIRPNAGRHGSTSGTLRGHPTPLEREPYKISFSRIAETELESTVSAPTSPNTPSTPPVSASSDHSVFLDVDLNSSCGSNTIFAPVLLPHSKTFFSSCGSLHKLSEEPLIPPPLPPRKKFDHDALNSKGAVKSDDDPPAIPPRQPPPPKVKPRVPVLMGTFDGPVPSPPPPPPRDPLPDTPPPVPLRPPEHFINCPFNLQPPPLGHPHRDPDWLRDVSTCPNSPSTPPTTPSPRIPRSCHLLSSSHSSLAHLPAPPVPPRQNSSPLLPKLPPKTYKRELSHPPLYRLPLLENAETPQ", "length": 1333 }, "evidence": [ { "id": "F1SHY0", "url": "https://omabrowser.org/oma/group/F1SHY0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q07890-1", "protein_name": "Son of sevenless homolog 2", "gene_name": "SOS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQAPQPYEFFSEENSPKWRGLLVSALRKVQEQVHPTLSANEESLYYIEELIFQLLNKLCMAQPRTVQDVEERVQKTFPHPIDKWAIADAQSAIEKRKRRNPLLLPVDKIHPSLKEVLGYKVDYHVSLYIVAVLEYISADILKLAGNYVFNIRHYEISQQDIKVSMCADKVLMDMFDQDDIGLVSLCEDEPSSSGELNYYDLVRTEIAEERQYLRELNMIIKVFREAFLSDRKLFKPSDIEKIFSNISDIHELTVKLLGLIEDTVEMTDESSPHPLAGSCFEDLAEEQAFDPYETLSQDILSPEFHEHFNKLMARPAVALHFQSIADGFKEAVRYVLPRLMLVPVYHCWHYFELLKQLKACSEEQEDRECLNQAITALMNLQGSMDRIYKQYSPRRRPGDPVCPFYSHQLRSKHLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGPLTRIGAKHERHIFLFDGLMISCKPNHGQTRLPGYSSAEYRLKEKFVMRKIQICDKEDTCEHKHAFELVSKDENSIIFAAKSAEEKNNWMAALISLHYRSTLDRMLDSVLLKEENEQPLRLPSPEVYRFVVKDSEENIVFEDNLQSRSGIPIIKGGTVVKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLLIERFEIPEPEPTDADKLAIEKGEQPISADLKRFRKEYVQPVQLRILNVFRHWVEHHFYDFERDLELLERLESFISSVRGKAMKKWVESIAKIIRRKKQAQANGVSHNITFESPPPPIEWHISKPGQFETFDLMTLHPIEIARQLTLLESDLYRKVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVEAENFEERVAVLSRIIEILQVFQDLNNFNGVLEIVSAVNSVSVYRLDHTFEALQERKRKILDEAVELSQDHFKKYLVKLKSINPPCVPFFGIYLTNILKTEEGNNDFLKKKGKDLINFSKRRKVAEITGEIQQYQNQPYCLRIEPDMRRFFENLNPMGSASEKEFTDYLFNKSLEIEPRNCKQPPRFPRKSTFSLKSPGIRPNTGRHGSTSGTLRGHPTPLEREPCKISFSRIAETELESTVSAPTSPNTPSTPPVSASSDLSVFLDVDLNSSCGSNSIFAPVLLPHSKSFFSSCGSLHKLSEEPLIPPPLPPRKKFDHDASNSKGNMKSDDDPPAIPPRQPPPPKVKPRVPVPTGAFDGPLHSPPPPPPRDPLPDTPPPVPLRPPEHFINCPFNLQPPPLGHLHRDSDWLRDISTCPNSPSTPPSTPSPRVPRRCYVLSSSQNNLAHPPAPPVPPRQNSSPHLPKLPPKTYKRELSHPPLYRLPLLENAETPQ", "length": 1332 }, "evidence": [ { "id": "F1SHY0", "url": "https://omabrowser.org/oma/group/F1SHY0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F1SHY0", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1SHY0", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "F1SHY0", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" } ], "pmid": "" }, { "name": "Ras protein signal transduction", "id": "GO:0007265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007265", "evidence": [ { "database": "UniProtKB", "id": "F1SHY0", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" } ], "pmid": "" }, { "name": "insulin receptor signaling pathway", "id": "GO:0008286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008286", "evidence": [ { "database": "UniProtKB", "id": "F1SHY0", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SHY0", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1009, "end_pos": 1011, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1109, "end_pos": 1111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1297, "end_pos": 1299, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 472, "end_pos": 474, "annotation": "n_glycosylation_sequon" }, { "start_pos": 749, "end_pos": 751, "annotation": "n_glycosylation_sequon" }, { "start_pos": 828, "end_pos": 830, "annotation": "n_glycosylation_sequon" }, { "start_pos": 955, "end_pos": 957, "annotation": "n_glycosylation_sequon" }, { "start_pos": 997, "end_pos": 999, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 198, "end_pos": 388, "start_aa": "Asn", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" }, { "id": "PS50212", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50212" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "N-terminal Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 595, "end_pos": 739, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 441, "end_pos": 544, "start_aa": "Glu", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY0" }, { "id": "PS50009", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50009" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ras-GEF", "eco_id": "ECO_0000259", "start_pos": 778, "end_pos": 1017, "start_aa": "His", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1265 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1009, "end_pos": 1011 }, { "start_pos": 1109, "end_pos": 1111 }, { "start_pos": 1297, "end_pos": 1299 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 472, "end_pos": 474 }, { "start_pos": 749, "end_pos": 751 }, { "start_pos": 828, "end_pos": 830 }, { "start_pos": 955, "end_pos": 957 }, { "start_pos": 997, "end_pos": 999 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKV2-1", "uniprot_ac": "F1SKV2", "uniprot_id": "F1SKV2_PIG", "mass": { "chemical_mass": 67053.0, "monoisotopic_mass": 67053.0 }, "refseq": { "ac": "XP_013840263", "name": "E3 ubiquitin-protein ligase RNF180 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840263" }, "gene_names": [ { "name": "RNF180", "type": "recommended", "evidence": [ { "id": "F1SKV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ] }, { "name": "RNF180", "type": "synonym", "evidence": [ { "id": "XP_013840263", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840263" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase RNF180", "type": "recommended", "evidence": [ { "id": "F1SKV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV2/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1SKV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV2/entry#names_and_taxonomy" } ] }, { "name": "E3 ubiquitin-protein ligase RNF180 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013840263", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840263" } ] }, { "name": "RING finger protein 180", "type": "synonym", "evidence": [ { "id": "F1SKV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV2/entry#names_and_taxonomy" } ] }, { "name": "RING-type E3 ubiquitin transferase RNF180", "type": "synonym", "evidence": [ { "id": "F1SKV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "E3 ubiquitin-protein ligase which promotes polyubiquitination and degradation by the proteasome pathway of ZIC2.", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2#function" }, { "database": "UniProtKB", "id": "ARBA00058659", "url": "https://www.uniprot.org/uniprotkb/ARBA00058659#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF180", "url": "https://www.uniprot.org/uniprotkb/F1SKV2", "locus": { "chromosome": "16", "start_pos": 42953592, "end_pos": 42723065, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016941", "url": "https://www.ensembl.org/id/ENSSSCG00000016941" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016941", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016941", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16554", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16554", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100526254", "url": "https://www.ncbi.nlm.nih.gov/gene/100526254", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033263", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033263", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526254", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526254", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CETQTQR", "url": "https://omabrowser.org/oma/group/CETQTQR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKV2", "url": "https://www.orthodb.org/?gene=F1SKV2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46717", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46717", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46717:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46717:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19332", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19332", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013840263", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013840263", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D0VY27", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VY27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0VY27-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VY27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKV2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRSKELITKNHNQEEISILRCWKCRKCIASSDCFMEYLEDQVIKDRNDSADDQNICHVWHMNIEALPEWITCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRTDYQPTRADRLMRPSLKYLSHPRVQSGCDKETLLTGGTSKNRNHRLLNMAQNNNGPGRLTEALCLEARSTYFEMKKEKLLFNASDPKYRLFVPQLVSGRCTTRAFHRKSHSLDLNISERLTLLPTLYEIHRKSTAYPRLNETQPIDLSGLPLESSKNNCSFQISSSFDPNMLLQRFSVAPSETQTQRGEFQCGLEASTVYTDHAGSNSLTFLVDLPSAGRSMLEASDQEEHLSPLDFLHSGSFSLGAINQRLSKRERSKLKNLRRKQRRHERWLQKQTLDNDMSTDDDNEYAEEKESYICAVCLDIYFNPYMCYPCHHIFCEPCLRTLAKDNPASTPCPLCRTIISRVFFQTELNNATKTFFTKEYLKRKQSFQKSSSAKWPLPSCRKAFHLFGGFHRHAAPVTRRQFPHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF", "length": 579, "header": "tr|F1SKV2-1|F1SKV2_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF180 OS=Sus scrofa OX=9823 GN=RNF180 PE=4 SV=3 CANONICAL=F1SKV2-1" }, "isoforms": [ { "isoform_ac": "A0A8D0VY27-1", "url": "https://www.uniprot.org/uniprotkb/F1SKV2/entry#A0A8D0VY27-1", "sequence": { "sequence": "MKRSKELITKNHNQEEISILRCWKCRKCIASSDCFMEYLEDQVIKDRNDSADDQNICHVWHMNIEALPEWITCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRTDYQPTRADRLMRPSLKYLSHPRVQSGCDKETLLTGGTSKNRNHRLLNMAQNNNGPGRLTEALCLEARSTYFEMKKEKLLFNASDPKYRLFVPQLVSGRCTTRAFHRKSHSLDLNISERLTLLPTLYEIHRKSTAYPRLNETQPIDLSGLPLESSKNNCSFQISSSFDPNMLLQRFSVAPSETQTQRGEFQCGLEASTVYTDHAGSNSLTFLVDLPSAGRSMLEASDQEEHLSPLDFLHSGSFSLGAINQRLSKRERSKLKNLRRKQRRHERWLQKQSKRSEVGLLGHMLRVYLVL", "length": 415, "header": "tr|A0A8D0VY27-1|F1SKV2_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase RNF180 OS=Sus scrofa OX=9823 GN=RNF180 PE=4 SV=1 CANONICAL=F1SKV2-1" }, "locus": { "chromosome": "16", "start_pos": 42752281, "end_pos": 42723100, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076947.2", "url": "https://www.ensembl.org/id/ENSSSCT00000076947.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071387.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071387.1" } ] } }, { "isoform_ac": "F1SKV2-1", "url": "https://www.uniprot.org/uniprotkb/F1SKV2/entry#F1SKV2-1", "sequence": { "sequence": "MKRSKELITKNHNQEEISILRCWKCRKCIASSDCFMEYLEDQVIKDRNDSADDQNICHVWHMNIEALPEWITCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRTDYQPTRADRLMRPSLKYLSHPRVQSGCDKETLLTGGTSKNRNHRLLNMAQNNNGPGRLTEALCLEARSTYFEMKKEKLLFNASDPKYRLFVPQLVSGRCTTRAFHRKSHSLDLNISERLTLLPTLYEIHRKSTAYPRLNETQPIDLSGLPLESSKNNCSFQISSSFDPNMLLQRFSVAPSETQTQRGEFQCGLEASTVYTDHAGSNSLTFLVDLPSAGRSMLEASDQEEHLSPLDFLHSGSFSLGAINQRLSKRERSKLKNLRRKQRRHERWLQKQTLDNDMSTDDDNEYAEEKESYICAVCLDIYFNPYMCYPCHHIFCEPCLRTLAKDNPASTPCPLCRTIISRVFFQTELNNATKTFFTKEYLKRKQSFQKSSSAKWPLPSCRKAFHLFGGFHRHAAPVTRRQFPHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF", "length": 579, "header": "tr|F1SKV2-1|F1SKV2_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF180 OS=Sus scrofa OX=9823 GN=RNF180 PE=4 SV=3 CANONICAL=F1SKV2-1" }, "locus": { "chromosome": "16", "start_pos": 42951110, "end_pos": 42723100, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018449.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018449.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017949.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017949.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0VY27", "url": "https://www.uniprot.org/uniprotkb/A0A8D0VY27" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100526254", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526254", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MEM4-1", "protein_name": "E3 ubiquitin-protein ligase RNF180", "gene_name": "RNF180", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKRSKELVTKNHNQEDISILRCWKCRKCIASSGCFMEYLENQVTKNTNDSADDENICHVWHMNIEALPEWIHCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRTDYQPTRSGRLMRPSLKYLSHPRVQSGCDKETLLTGGASRNRNHRFLNMGPNNNGPGRLTEALCLEVRSTYFKMKNEKLLFKASDPKYQLFVPQLVTTRCAPRAFHRKSHSLDLSISEKLTLLPTLYEIHSKTTVYPGLNETQTVDLPSLPLESNKNNCSFQISSSFDPNMLLQRFSVAPRETQTQRGGEFQRGLEASAVYSGHGSPNSLTFLMDLPAAGRSTLEAEDQEEHLSPLNFLHSGSFSLGAINQRLSKREKSKLKNLRRKQRRHERWLQKQGKCPGVGLPDCMTLDNEMSTDDDNEYAEEKESYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPASTPCPLCRTIISRVFFQTELNNATKTFFTKEYLKRKQSFQKSSSAKWPLPNCRKAFHLFGGFHRRAAPVTRRQFPHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF", "length": 592 }, "evidence": [ { "id": "F1SKV2", "url": "https://omabrowser.org/oma/group/F1SKV2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I5ZZU5-1", "protein_name": "E3 ubiquitin-protein ligase RNF180", "gene_name": "Rnf180", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSSEVHLDPVEPRVPGVEVIMSMMRRSEESTGTQSSEEQTGALRCWRCRKCIASSGCFMSPLETQAVEDRHESVDAQNTCHLWHMNAEALPEWISCLVQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLCKSRTEHQATQAGRLTRPAPKCLPHPGVPSGCDKETLLTGGGSKTRSHRLLSMARNNNGLGRLTEALCLEVRATYFEMKNEKLLFKTSDPKCQPFVPQPDTGRCTSRASHRKSHSLDLNISEKLILLPTLYEIHSKPAAYPRVNETGPIDLSGLALPCSKSNCSFQNPPSFDPSMLLHRLSVAPHETQAQRGREFQCGLEASSVYSDHAHANSLPFLMDLPSAGRSMLEASDQEEHLSPLDFLRSASFPLGTINHRLNNRERNKLRTLRRQQRRRERWLQKQGKYSGVGLLDHMTLSNEMSTDDEPEFTEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPASTPCPLCRTIISRVFLQTELNNATKTFFTKEYLKIKQSFQKSSSAKWPLPSCRKGFHLFGGFHRRAAPVTRRQFPHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFVVFCFLCYFFFPF", "length": 616 }, "evidence": [ { "id": "F1SKV2", "url": "https://omabrowser.org/oma/group/F1SKV2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3U827-1", "protein_name": "E3 ubiquitin-protein ligase RNF180", "gene_name": "Rnf180", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRSEESTSTQSPEEQTGTLHCWRCRKCIASSGCFMTPLETQVVEQDRHESVDAQNTCHLWHMNVDALPEWISCLLQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLCKSRTDHQAAQGGRLMRPALKHLPHPGVPSGCDKETLLTGGGSKTRNHWLLSMARNSNGLGRLTEALCLEVRATYFEMKNEKLLFKASDPKCQPFVPQPDTGRCPSRASHRKSHSLDLNISEKLILLPTLYEIHRKPTAYPRLNETGPIDLSGLALPCSNSSCSFQSPPSFDPNMLLHRLSVAPHETQAQRGRECQCGLEASSVYSDHANANSLPFLMDLPSAGRSVLEASDQEEHLSQLDFLRSASFPLGTINHRLNNRERSKLRTLRRQQRRERWLQKQGKYSGVGLLDHMTVSNEMSTDEETEFPEEKDSYMCAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPASTPCPLCRTIISRVFLQTELNNATKTFFTKEYLKIKQSFQKSSSAKWPLPSCRKGFHLFGGFHRRAAPVTRRQFPHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFVVFCFLCYFFFPF", "length": 592 }, "evidence": [ { "id": "F1SKV2", "url": "https://omabrowser.org/oma/group/F1SKV2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86T96-1", "protein_name": "E3 ubiquitin-protein ligase RNF180", "gene_name": "RNF180", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKRSKELITKNHSQEETSILRCWKCRKCIASSGCFMEYLENQVIKDKDDSVDAQNICHVWHMNVEALPEWISCLIQKAQWTVGKLNCPFCGARLGGFNFVSTPKCSCGQLAAVHLSKSRTDYQPTQAGRLMRPSVKYLSHPRVQSGCDKEALLTGGGSENRNHRLLNMARNNNDPGRLTEALCLEVRPTYFEMKNEKLLSKASEPKYQLFVPQLVTGRCATRAFHRKSHSLDLNISEKLTLLPTLYEIHSKTTAYSRLNETQPIDLSGLPLQSSKNSYSFQNPSSFDPSMLLQRFSVAPHETQTQRGGEFQCGLEAASVYSDHTNTNNLTFLMDLPSAGRSMPEASDQEEHLSPLDFLHSANFSLGSINQRLNKRERSKLKNLRRKQRRRERWLQKQGKYSGVGLLDHMTLNNEMSTDEDNEYAEEKDSYICAVCLDVYFNPYMCYPCHHIFCEPCLRTLAKDNPSSTPCPLCRTIISRVFFQTELNNATKTFFTKEYLKIKQSFQKSNSAKWPLPSCRKAFHLFGGFRRHAAPVTRRQFPHGAHRMDYLHFEDDSRGWWFDMDMVIIYIYSVNWVIGFIVFCFLCYFFFPF", "length": 592 }, "evidence": [ { "id": "F1SKV2", "url": "https://omabrowser.org/oma/group/F1SKV2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "pmid": "" }, { "name": "ubiquitin conjugating enzyme binding", "id": "GO:0031624", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031624", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "pmid": "" }, { "name": "serotonin metabolic process", "id": "GO:0042428", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042428", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "pmid": "" }, { "name": "norepinephrine metabolic process", "id": "GO:0042415", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042415", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "pmid": "" }, { "name": "positive regulation of proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0032436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032436", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SKV2", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV2" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 419, "end_pos": 461, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 }, { "start_pos": 234, "end_pos": 236 }, { "start_pos": 259, "end_pos": 261 }, { "start_pos": 277, "end_pos": 279 }, { "start_pos": 475, "end_pos": 477 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFR7-1", "uniprot_ac": "F1SFR7", "uniprot_id": "F1SFR7_PIG", "mass": { "chemical_mass": 68801.0, "monoisotopic_mass": 68801.0 }, "refseq": { "ac": "XP_003358539", "name": "kelch repeat and BTB domain-containing protein 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358539" }, "gene_names": [ { "name": "KBTBD8", "type": "recommended", "evidence": [ { "id": "F1SFR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ] }, { "name": "KBTBD8", "type": "synonym", "evidence": [ { "id": "XP_003358539", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358539" } ] } ], "protein_names": [ { "name": "Kelch repeat and BTB domain-containing protein 8", "type": "recommended", "evidence": [ { "id": "F1SFR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR7/entry#names_and_taxonomy" } ] }, { "name": "kelch repeat and BTB domain-containing protein 8 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003358539", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358539" } ] } ], "function": [ { "annotation": "Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a regulator of neural crest specification. The BCR(KBTBD8) complex acts by mediating monoubiquitination of NOLC1 and TCOF1: monoubiquitination promotes the formation of a NOLC1-TCOF1 complex that acts as a platform to connect RNA polymerase I with enzymes responsible for ribosomal processing and modification, leading to remodel the translational program of differentiating cells in favor of neural crest specification.", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7#function" }, { "database": "UniProtKB", "id": "ARBA00053690", "url": "https://www.uniprot.org/uniprotkb/ARBA00053690#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KBTBD8", "url": "https://www.uniprot.org/uniprotkb/F1SFR7", "locus": { "chromosome": "13", "start_pos": 48501345, "end_pos": 48486978, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011500", "url": "https://www.ensembl.org/id/ENSSSCG00000011500" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011500", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011500", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18274", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18274", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18483", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18483", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100623982", "url": "https://www.ncbi.nlm.nih.gov/gene/100623982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028764", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028764", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623982", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623982", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FWMYDHA", "url": "https://omabrowser.org/oma/group/FWMYDHA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFR7", "url": "https://www.orthodb.org/?gene=F1SFR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF433", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF433", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46375", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46375", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46375:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46375:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003358539", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358539", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D0XP88", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XP88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0XP88-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XP88-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASADLNKSSPTPNGIPSSDTASEAMDPFHACSILKQLKTMYDEGQLTDIVVEVDHGKTFSCHRNVLAAISPYFRSMFTSGLTESTQKEVRIVGVEAESMDLVLNYAYTSRIVLTEANVQALFTAASIFQIPSIQDQCAKYMISHLDPQNSIGVFIFADHYGHQELGDRSKEYIRKKFLCVTKEQEFLQLTKDQLISILNSDDLNVDREEHVYESIIRWFEHEQSEREVHLPEIFAKCIRFPLMEDTFVEKIPPQFAQAIAKSSGEKGPLSTNGCTQRLGMTASEMIICFDAAHKHSGKKQTVPCLDIFTGKVFKLCKPPNDLREVGILVSPDNDIYIAGGYRPSSSEVSIDHKAENDFWMYDHSTNRWLAKPSLLRARIGCKLVYCCGKMYAIGGRVYEGDGRNSLKSVECYDSRENCWTTVCAMPVAMEFHNAVEYKEKIYVLQGEFFLFYEPQKDYWGFLTPMTVPRIQGLAAVYKNSIYYIAGTCGNHQRMFTVEAYDIELNKWTRKKDFPCDESINPYLKLVLFQNKLHLFVRATQVTVEEHVFRTSRKNSLYQYDDITDQWMKVYETPDRLWDLGRHFECAVAKLYPQCLQKVL", "length": 601, "header": "tr|F1SFR7-1|F1SFR7_PIG Isoform 1 of Kelch repeat and BTB domain-containing protein 8 OS=Sus scrofa OX=9823 GN=KBTBD8 PE=3 SV=2 CANONICAL=F1SFR7-1" }, "isoforms": [ { "isoform_ac": "A0A8D0XP88-1", "url": "https://www.uniprot.org/uniprotkb/F1SFR7/entry#A0A8D0XP88-1", "sequence": { "sequence": "MAASAGEFFLFYEPQKDYWGFLTPMTVPRIQGLAAVYKNSIYYIAGTCGNHQRMFTVEAYDIELNKWTRKKDFPCDESINPYLKLVLFQNKLHLFVRATQVTVEEHVFRTSRKNSLYQYDDITDQWMKVYETPDRLWDLGRHFECAVAKLYPQCLQKVL", "length": 159, "header": "tr|A0A8D0XP88-1|F1SFR7_PIG Computationally mapped isoform of Kelch repeat and BTB domain-containing protein 8 OS=Sus scrofa OX=9823 GN=KBTBD8 PE=3 SV=1 CANONICAL=F1SFR7-1" }, "locus": { "chromosome": "13", "start_pos": 48497175, "end_pos": 48487026, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096344.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096344.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078338.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078338.1" } ] } }, { "isoform_ac": "F1SFR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFR7/entry#F1SFR7-1", "sequence": { "sequence": "MAASADLNKSSPTPNGIPSSDTASEAMDPFHACSILKQLKTMYDEGQLTDIVVEVDHGKTFSCHRNVLAAISPYFRSMFTSGLTESTQKEVRIVGVEAESMDLVLNYAYTSRIVLTEANVQALFTAASIFQIPSIQDQCAKYMISHLDPQNSIGVFIFADHYGHQELGDRSKEYIRKKFLCVTKEQEFLQLTKDQLISILNSDDLNVDREEHVYESIIRWFEHEQSEREVHLPEIFAKCIRFPLMEDTFVEKIPPQFAQAIAKSSGEKGPLSTNGCTQRLGMTASEMIICFDAAHKHSGKKQTVPCLDIFTGKVFKLCKPPNDLREVGILVSPDNDIYIAGGYRPSSSEVSIDHKAENDFWMYDHSTNRWLAKPSLLRARIGCKLVYCCGKMYAIGGRVYEGDGRNSLKSVECYDSRENCWTTVCAMPVAMEFHNAVEYKEKIYVLQGEFFLFYEPQKDYWGFLTPMTVPRIQGLAAVYKNSIYYIAGTCGNHQRMFTVEAYDIELNKWTRKKDFPCDESINPYLKLVLFQNKLHLFVRATQVTVEEHVFRTSRKNSLYQYDDITDQWMKVYETPDRLWDLGRHFECAVAKLYPQCLQKVL", "length": 601, "header": "tr|F1SFR7-1|F1SFR7_PIG Isoform 1 of Kelch repeat and BTB domain-containing protein 8 OS=Sus scrofa OX=9823 GN=KBTBD8 PE=3 SV=2 CANONICAL=F1SFR7-1" }, "locus": { "chromosome": "13", "start_pos": 48497175, "end_pos": 48487026, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012585.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012585.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012256.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012256.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0XP88", "url": "https://www.uniprot.org/uniprotkb/A0A8D0XP88" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623982", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623982", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [ { "uniprot_canonical_ac": "B1H285-1", "protein_name": "Kelch repeat and BTB domain-containing protein 8", "gene_name": "Kbtbd8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDPFHACSILKQLKTMYDEGQLTDIVVEVDHGKTFSCHRNVLAAISPYFRSMFTSGLTESTQKEVRIIGVEAESMGLVLNYAYTSRVILTEANVQALFTTASIFQIPSIQDQCAKYMISHLDPQNSIGVFIFADHYGHQELGDRSKEYIRKKFLCVTKEQEFLQLTKDQLISILDSDDLNVDREEHVYESIIRWFEHEQNEREVHLPEIFAKCIRFPLMEDAFIEKIPPRFAQAIVKSCGEKGPSNTNGCTQRLGMTASEMIICFDAAHKHSGKKQTVPCLDIVTGRVFKLCKPPNDLREVGILVSPDNDIYIAGGYRPSSSEVSIDHKAENDFWMYDHSTNRWLSKPSLLRARIGCKLVYCCGKMYAIGGRVYEGDGRNSLKSVECYDSRENCWMTVCAMPVAMEFHNAVEHKEKIYVLQGEFFLFYEPQKDYWGFLTPMTVPRIQGLAAVYKDSIYYIAGTCGNHQRVFTVEAYDIELNKWTRKKDFPCDQSINPYLKLVLFQNKLHLFVRATQVTVEEHIFRTSRKNSLYQYDDIADQWMKVYETPDRLWDLGRHFECAVAKLYPQCLQKVL", "length": 575 }, "evidence": [ { "id": "F1SFR7", "url": "https://omabrowser.org/oma/group/F1SFR7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3UQV5-1", "protein_name": "Kelch repeat and BTB domain-containing protein 8", "gene_name": "Kbtbd8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASADLSKSSPTPNGIPSSDTANDTMDPFHACSILKQLKTMYDEGQLTDIVVEVDHGKTFSCHRNVLAAISPYFRSMFTSGLTESTQKEVRIIGVEAESMDLVLNYAYTSRVILTEANVQALFTTASIFQIPSIQDQCAKYMISHLDPQNSIGVFIFADHYGHQELGDRSKEYIRKKFLCVTKEQEFLQLTKDQLISILDSDDLNVDREEHVYESIIRWFEHEQSEREVHLPEIFAKCIRFPLMEDTFIEKIPPQFAQAIVKSCGEPSNTSGCTQRLGMTASEMIICFDAAHKHSGKKQTVPCLDIVTGRVFKLCKPPNDLREVGILVSPDNDIYIAGGYRPSSSEVSIDHKAENDFWMYDHSTNRWLSKPSLLRARIGCKLVYCCGKMYAIGGRVYEGDGRNSLKSVECYDSRENCWMTVCAMPVAMEFHNAVEHKEKIYVLQGEFFLFYEPQKDYWGFLTPMTVPRIQGLAAVYKDSIYYIAGTCGNHQRVFTVEAYDIELNKWTRKKDFPCDQSINPYLKLVLFQNKLHLFVRATQVTVEEHIFRTSRKNSLYQYDDIADQWMKVYETPDRLWDLGRHFECAVAKLYPQCLQKVL", "length": 599 }, "evidence": [ { "id": "F1SFR7", "url": "https://omabrowser.org/oma/group/F1SFR7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NFY9-1", "protein_name": "Kelch repeat and BTB domain-containing protein 8", "gene_name": "KBTBD8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASADLSKSSPTPNGIPSSDPASDAMDPFHACSILKQLKTMYDEGQLTDIVVEVDHGKTFSCHRNVLAAISPYFRSMFTSGLTESTQKEVRIVGVEAESMDLVLNYAYTSRVILTEANVQALFTAASIFQIPSIQDQCAKYMISHLDPQNSIGVFIFADHYGHQELGDRSKEYIRKKFLCVTKEQEFLQLTKDQLISILDSDDLNVDREEHVYESIIRWFEHEQNEREVHLPEIFAKCIRFPLMEDTFIEKIPPQFAQAIAKSCVEKGPSNTNGCTQRLGMTASEMIICFDAAHKHSGKKQTVPCLDIVTGRVFKLCKPPNDLREVGILVSPDNDIYIAGGYRPSSSEVSIDHKAENDFWMYDHSTNRWLSKPSLLRARIGCKLVYCCGKMYAIGGRVYEGDGRNSLKSVECYDSRENCWTTVCAMPVAMEFHNAVEYKEKIYVLQGEFFLFYEPQKDYWGFLTPMTVPRIQGLAAVYKDSIYYIAGTCGNHQRMFTVEAYDIELNKWTRKKDFPCDQSINPYLKLVLFQNKLHLFVRATQVTVEEHVFRTSRKNSLYQYDDIADQWMKVYETPDRLWDLGRHFECAVAKLYPQCLQKVL", "length": 601 }, "evidence": [ { "id": "F1SFR7", "url": "https://omabrowser.org/oma/group/F1SFR7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "neural crest formation", "id": "GO:0014029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014029", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" }, { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" }, { "name": "neural crest cell development", "id": "GO:0014032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014032", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" }, { "name": "protein monoubiquitination", "id": "GO:0006513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006513", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" }, { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "F1SFR7", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR7" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 49, "end_pos": 117, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMR1-1", "uniprot_ac": "F1SMR1", "uniprot_id": "F1SMR1_PIG", "mass": { "chemical_mass": 76821.0, "monoisotopic_mass": 76821.0 }, "refseq": {}, "gene_names": [ { "name": "TTC39B", "type": "recommended", "evidence": [ { "id": "F1SMR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMR1" } ] } ], "protein_names": [ { "name": "Tetratricopeptide repeat protein 39B", "type": "recommended", "evidence": [ { "id": "F1SMR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMR1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMR1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTC39B", "url": "https://www.uniprot.org/uniprotkb/F1SMR1", "locus": { "chromosome": "1", "start_pos": 207495965, "end_pos": 207347360, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005186", "url": "https://www.ensembl.org/id/ENSSSCG00000005186" } ] } } ], "crossref": [ { "id": "F1SMR1", "url": "https://alphafold.ebi.ac.uk/entry/F1SMR1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005186", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005186", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31859", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31859", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31859:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31859:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10300", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10300", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13174", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13174", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8D1D079", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D079", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1D079-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D079-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1NVH8", "url": "https://www.uniprot.org/uniprotkb/A0A8D1NVH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1NVH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1NVH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMR1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMR1-1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDALSVCRRPGQGACWPRPRPGGRTGPPLSSLADAGLRPEPRNRVGSELPVWLLGGGSLRRNMALVGNGTELEADEDIFEDALETLSMASRIDMATSSQHCSSFDTKQASGQHRTSAVKRSPSTKVDLRSCLEECTVALNLFLSNRFTDALELLRPWAKDSMYHALGYSTIVVMQAVMTFEQQDIQNGISAMKDALQTCQKYRKKCTVVESFSSLLSRGSLDQLTEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHVIQKNKGGQQFLNEFEGGVKLGIGAFNLMLSLLPARIIRLLEFIGFSGNRELGIQQLREGALGKSMRSPLCCLTILAFHTYISLILGTGEVNVVEAESLLEPYLQQFPNGSLMLFYHGRIELLKGNVEEAQEIFRKCISVQEEWKQFHHLCYWELMWIFVFQQNWMEAYYCSDLLCKESKWSKATYVFLKAAILSMLPEDDVEATKEDVVTLFRQVDGLKQRIAGKSIPTEKFAVRKSRRYSPSLPAPVKLVLPALEMMYVWNGFPLVSKRKDLSENLLVTVEKAEAALQSEDSSDYSIDDECLVKLLKGCCLKNLQRPLQAELCFNHVIQSEKLLKYDHYLVPFTLFELAFLYKNQGEIDKAIKVLETARNNYKDYSLESRLHFRIQAALHLWRKSSSD", "length": 678, "header": "tr|F1SMR1-1|F1SMR1_PIG Isoform 1 of Tetratricopeptide repeat protein 39B OS=Sus scrofa OX=9823 GN=TTC39B PE=3 SV=4 CANONICAL=F1SMR1-1" }, "isoforms": [ { "isoform_ac": "A0A8D1D079-1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1/entry#A0A8D1D079-1", "sequence": { "sequence": "MDALSVCRRPGQGACWPRPRPGGRTGPPLSSLADAGLRPEPRNRVGSELPVWLLGGGSLRRNMALVGNGTELEADEDIFEDALETLSMAKDSMYHALGYSTIVVMQAVMTFEQQDIQNGISAMKDALQTCQKYRKKCTVVESFSSLLSRGSLDQLTEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHVIQKNKGGQQFLNEFEGGVKLGIGAFNLMLSLLPARIIRLLEFIGFSGNRELGIQQLREGALGKSMRSPLCCLTILAFHTYISLILGTGEVNVVEAESLLEPYLQQFPNGSLMLFYHGRIELLKGNVEEAQEIFRKCISVQEEWKQFHHLCYWELMWIFVFQQNWMEAYYCSDLLCKESKWSKATYVFLKAAILSMLPEDDVEATKEDVVTLFRQVDGLKQRIAGKSIPTEKFAVRKSRRYSPSLPAPVKLVLPALEMMYVWNGFPLVSKRKDLSENLLVTVEKAEAALQSEDSSDYSIDDECLVKLLKGCCLKNLQRPLQAELCFNHVIQSEKLLKYDHYLVPFTLFELAFLYKNQGEIDKAIKVLETARNNYKDYSLESRLHFRIQAALHLWRKSSSD", "length": 609, "header": "tr|A0A8D1D079-1|F1SMR1_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 39B OS=Sus scrofa OX=9823 GN=TTC39B PE=3 SV=1 CANONICAL=F1SMR1-1" }, "locus": { "chromosome": "1", "start_pos": 207488639, "end_pos": 207347360, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095285.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095285.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079208.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079208.1" } ] } }, { "isoform_ac": "A0A8D1NVH8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1/entry#A0A8D1NVH8-1", "sequence": { "sequence": "MDALSVCRRPGQGACWPRPRPGGRTGPPLSSLADAGLRPEPRNRVGSELPVWLLGGGSLRRNMALVGNGTELEADEDIFEDALETLSMASRIDMATSSQHCSSFDTKQASGQHRTSAVKRSPSTKVDLRSCLEECTVALNLFLSNRFTDALELLRPWAKDSMYHALGYSTIVVMQAVMTFEQQDIQNGISAMKDALQTCQKYRKKCTVVESFSSLLSRGSLDQLTEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHVIQKNKGGQQFLNEFEGGVKLGIGAFNLMLSLLPARIIRLLEFIGFSGNRELGIQQLREGALGKSMRSPLCCLTILAFHTYISLILGTGEVNVVEAESLLEPYLQQFPNVCLEIVAQEIFRKCISVQEEWKQFHHLCYWELMWIFVFQQNWMEAYYCSDLLCKESKWSKATYVFLKAAILSMLPEDDVEATKEDVVTLFRQVDGLKQRIAGKSIPTEKFAVRKSRRYSPSLPAPVKLVLPALEMMYVWNGFPLVSKRKDLSENLLVTVEKAEAALQSEDSSDYSIDDECLVKLLKGCCLKNLQRPLQAELCFNHVIQSEKLLKYDHYLVPFTLFELAFLYKNQGEIDKAIKVLETARNNYKDYSLESRLHFRIQAALHLWRKSSSD", "length": 664, "header": "tr|A0A8D1NVH8-1|F1SMR1_PIG Computationally mapped isoform of Tetratricopeptide repeat protein 39B OS=Sus scrofa OX=9823 GN=TTC39B PE=3 SV=1 CANONICAL=F1SMR1-1" }, "locus": { "chromosome": "1", "start_pos": 207488639, "end_pos": 207347360, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098626.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098626.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077878.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077878.1" } ] } }, { "isoform_ac": "F1SMR1-1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1/entry#F1SMR1-1", "sequence": { "sequence": "MDALSVCRRPGQGACWPRPRPGGRTGPPLSSLADAGLRPEPRNRVGSELPVWLLGGGSLRRNMALVGNGTELEADEDIFEDALETLSMASRIDMATSSQHCSSFDTKQASGQHRTSAVKRSPSTKVDLRSCLEECTVALNLFLSNRFTDALELLRPWAKDSMYHALGYSTIVVMQAVMTFEQQDIQNGISAMKDALQTCQKYRKKCTVVESFSSLLSRGSLDQLTEEEMHAEICYAECLLQKAALTFVQDENMINFIKGGLKIRTSYQIYKECLSILHVIQKNKGGQQFLNEFEGGVKLGIGAFNLMLSLLPARIIRLLEFIGFSGNRELGIQQLREGALGKSMRSPLCCLTILAFHTYISLILGTGEVNVVEAESLLEPYLQQFPNGSLMLFYHGRIELLKGNVEEAQEIFRKCISVQEEWKQFHHLCYWELMWIFVFQQNWMEAYYCSDLLCKESKWSKATYVFLKAAILSMLPEDDVEATKEDVVTLFRQVDGLKQRIAGKSIPTEKFAVRKSRRYSPSLPAPVKLVLPALEMMYVWNGFPLVSKRKDLSENLLVTVEKAEAALQSEDSSDYSIDDECLVKLLKGCCLKNLQRPLQAELCFNHVIQSEKLLKYDHYLVPFTLFELAFLYKNQGEIDKAIKVLETARNNYKDYSLESRLHFRIQAALHLWRKSSSD", "length": 678, "header": "tr|F1SMR1-1|F1SMR1_PIG Isoform 1 of Tetratricopeptide repeat protein 39B OS=Sus scrofa OX=9823 GN=TTC39B PE=3 SV=4 CANONICAL=F1SMR1-1" }, "locus": { "chromosome": "1", "start_pos": 207488639, "end_pos": 207347360, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005717.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005717.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005575.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005575.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1D079", "url": "https://www.uniprot.org/uniprotkb/A0A8D1D079" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F1SMR1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1" } ], "pmid": "" }, { "name": "regulation of cholesterol metabolic process", "id": "GO:0090181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090181", "evidence": [ { "database": "UniProtKB", "id": "F1SMR1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1" } ], "pmid": "" }, { "name": "negative regulation of cholesterol storage", "id": "GO:0010887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010887", "evidence": [ { "database": "UniProtKB", "id": "F1SMR1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1" } ], "pmid": "" }, { "name": "cholesterol homeostasis", "id": "GO:0042632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042632", "evidence": [ { "database": "UniProtKB", "id": "F1SMR1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1" } ], "pmid": "" }, { "name": "regulation of cholesterol efflux", "id": "GO:0010874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010874", "evidence": [ { "database": "UniProtKB", "id": "F1SMR1", "url": "https://www.uniprot.org/uniprotkb/F1SMR1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMR1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 678, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMR1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMR1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 387, "end_pos": 389 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKI6-1", "uniprot_ac": "F1SKI6", "uniprot_id": "F1SKI6_PIG", "mass": { "chemical_mass": 20589.0, "monoisotopic_mass": 20589.0 }, "refseq": { "ac": "NP_001230535", "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230535" }, "gene_names": [ { "name": "NDUFAF3", "type": "recommended", "evidence": [ { "id": "F1SKI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKI6" } ] }, { "name": "NDUFAF3", "type": "synonym", "evidence": [ { "id": "NP_001230535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230535" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "type": "recommended", "evidence": [ { "id": "F1SKI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKI6/entry#names_and_taxonomy" } ] }, { "name": "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3", "type": "synonym", "evidence": [ { "id": "NP_001230535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230535" } ] }, { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "type": "synonym", "evidence": [ { "id": "NP_001230535", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230535" } ] } ], "function": [ { "annotation": "Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).", "evidence": [ { "database": "UniProtKB", "id": "F1SKI6", "url": "https://www.uniprot.org/uniprotkb/F1SKI6#function" }, { "database": "UniProtKB", "id": "ARBA00004069", "url": "https://www.uniprot.org/uniprotkb/ARBA00004069#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKI6", "url": "https://www.uniprot.org/uniprotkb/F1SKI6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFAF3", "url": "https://www.uniprot.org/uniprotkb/F1SKI6", "locus": { "chromosome": "13", "start_pos": 31659220, "end_pos": 31656948, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011371", "url": "https://www.ensembl.org/id/ENSSSCG00000011371" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011371", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011371", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05125", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05125", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156018", "url": "https://www.ncbi.nlm.nih.gov/gene/100156018", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034095", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034095", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156018", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156018", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FSKAYDH", "url": "https://omabrowser.org/oma/group/FSKAYDH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKI6", "url": "https://www.orthodb.org/?gene=F1SKI6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21192:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21192:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04430", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04430", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6799198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230535", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230535", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D1LLR4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LLR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1LLR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LLR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKI6", "url": "https://www.uniprot.org/uniprotkb/F1SKI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKI6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVFVLRSLYRARHILRWPLAQLSWAPGRGHRLTPTDDELYQRTRISLLQRESPQAMYIDSYSSRGFVVNGNRVLGPCALLPHSVVQWNVGSHQDITEGSFSLFWMLEPRIEIVVVGTGDRTERLQPQVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGAALTSLAQVSKK", "length": 185, "header": "tr|F1SKI6-1|F1SKI6_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Sus scrofa OX=9823 GN=NDUFAF3 PE=1 SV=1 CANONICAL=F1SKI6-1" }, "isoforms": [ { "isoform_ac": "A0A8D1LLR4-1", "url": "https://www.uniprot.org/uniprotkb/F1SKI6/entry#A0A8D1LLR4-1", "sequence": { "sequence": "MAAVFVLRSLYRARHILRWPLAQLSWAPGRGHRLTPTDDELYQRTRISLLQRESPQAMYIDSYSSRGFVVNGNRVLGPCALLPHSVVQWNVGSHQDITEGSFSLFWMLEPRIEKTLLIPVGRRTSCEGEGRKTEAWETPQPQGQRNGKGWSLTNEGCGRHLQPELKMFSFQT", "length": 172, "header": "tr|A0A8D1LLR4-1|F1SKI6_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Sus scrofa OX=9823 GN=NDUFAF3 PE=1 SV=1 CANONICAL=F1SKI6-1" }, "locus": { "chromosome": "13", "start_pos": 31658874, "end_pos": 31656970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079232.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079232.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068085.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068085.1" } ] } }, { "isoform_ac": "F1SKI6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKI6/entry#F1SKI6-1", "sequence": { "sequence": "MAAVFVLRSLYRARHILRWPLAQLSWAPGRGHRLTPTDDELYQRTRISLLQRESPQAMYIDSYSSRGFVVNGNRVLGPCALLPHSVVQWNVGSHQDITEGSFSLFWMLEPRIEIVVVGTGDRTERLQPQVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGAALTSLAQVSKK", "length": 185, "header": "tr|F1SKI6-1|F1SKI6_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Sus scrofa OX=9823 GN=NDUFAF3 PE=1 SV=1 CANONICAL=F1SKI6-1" }, "locus": { "chromosome": "13", "start_pos": 31657956, "end_pos": 31656970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012449.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012449.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012124.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012124.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1LLR4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LLR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156018", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156018", "resource": "KEGG Pathway" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A1L1F1-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "gene_name": "ndufaf3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAVRHLCQRTAIRLRLTCSPQSRVCVVRGHRLGPFDDEQYRKTSVSIMQKEASAGTVIYSYSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGARTERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAAAALIPPPAGSR", "length": 174 }, "evidence": [ { "id": "F1SKI6", "url": "https://omabrowser.org/oma/group/F1SKI6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O08776-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "gene_name": "Ndufaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATALGFRCLYRTRPATLGRYVDRLWRSPSRGHRLSPADDELYQRTRISLLQNEFPQAVYIDSYNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGNKTERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGAALIPPPGETALASSGQTTE", "length": 185 }, "evidence": [ { "id": "F1SKI6", "url": "https://omabrowser.org/oma/group/F1SKI6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2HJI2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "gene_name": "NDUFAF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAFVLRNLYRARPALRSPPSELPWAPRRGHRLTPADDELYQRTRISLLQRESPLAMYIDSYSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGDRTERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTALTSQAQAAE", "length": 184 }, "evidence": [ { "id": "F1SKI6", "url": "https://omabrowser.org/oma/group/F1SKI6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8RUX8-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAMRLKSMATLPKLIQSMRKEVPKHSNPVLPSLRRAFSLYDQINLIDNVPEDQLRFQEFNDTSFTVNGVKYEGSLLCVGNLLMSWSPRKFSEITTDSLSIFQTVRPIPELLIVGCGRDIHPVTPEVRQFVKSLGMKLETVDSRNAASTYNILNEEGRVVAAALLPYGVTS", "length": 170 }, "evidence": [ { "id": "F1SKI6", "url": "https://omabrowser.org/oma/group/F1SKI6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9BU61-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "gene_name": "NDUFAF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATALALRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ", "length": 184 }, "evidence": [ { "id": "F1SKI6", "url": "https://omabrowser.org/oma/group/F1SKI6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JKL4-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "gene_name": "Ndufaf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATALGFRCLFRTRPAPLCRHVDRLWRNPRRGHRLSPADDELYQRTRISLLQSEFPQAVYIDSYSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGNKTERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGETALASLGQASE", "length": 185 }, "evidence": [ { "id": "F1SKI6", "url": "https://omabrowser.org/oma/group/F1SKI6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W1H9-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3", "gene_name": "NdufAF3", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MIARTLRTVGRQGRNLLLPRITACRPLHAIPANFSKAYDHDGKTKVTIFNTETDLGLMVTGYSQYGFRLNNDMVLIGPISVFPRSVLSWNVNSFEDINEDSLSLFPTLEPKIDVLIIGIGDQAPPPALSKRIIEFMKKYKINVEILRTEQACATFNFLNAENRMVACALIPPLHLSYNENDILQAKLRKKELYETE", "length": 196 }, "evidence": [ { "id": "F1SKI6", "url": "https://omabrowser.org/oma/group/F1SKI6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SKI6", "url": "https://www.uniprot.org/uniprotkb/F1SKI6" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SKI6", "url": "https://www.uniprot.org/uniprotkb/F1SKI6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial respiratory chain complex I assembly", "id": "GO:0032981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032981", "evidence": [ { "database": "UniProtKB", "id": "F1SKI6", "url": "https://www.uniprot.org/uniprotkb/F1SKI6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJH6-1", "uniprot_ac": "F1SJH6", "uniprot_id": "F1SJH6_PIG", "mass": { "chemical_mass": 96578.0, "monoisotopic_mass": 96578.0 }, "refseq": {}, "gene_names": [ { "name": "SKOR1", "type": "recommended", "evidence": [ { "id": "F1SJH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ] } ], "protein_names": [ { "name": "SKI family transcriptional corepressor 1", "type": "synonym", "evidence": [ { "id": "F1SJH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJH6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SKOR1", "url": "https://www.uniprot.org/uniprotkb/F1SJH6", "locus": { "chromosome": "1", "start_pos": 165762299, "end_pos": 165751321, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004956", "url": "https://www.ensembl.org/id/ENSSSCG00000004956" } ] } } ], "crossref": [ { "id": "F1SJH6", "url": "https://alphafold.ebi.ac.uk/entry/F1SJH6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004956", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004956", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21080", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21080", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003380", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003380", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10005", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10005", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10005:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10005:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02437", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02437", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4F7A9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7A9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7A9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7A9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJH6-1", "url": "https://www.uniprot.org/uniprotkb/F1SJH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALLCGLGSGGMEALTTQLGPGREGSSSPNSKQELQPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLSDKSATDELSHAWEDVKAMFNGGTRKRTFSLQGGSGGANGGSGGQGKGGAGGGGSGGPGCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLAAGAGGPGGPGGPGGGTGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYSFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGAGTGAGAGGPGTGHLPPGAGAGPGSGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPPYPAAQSQAKAVAAAVAAAAAAAAAAAGGGGPEPLDGAEPAKEGSLVAEDRCPSALSRGPLDEDGAEDALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDAESIAKLYGSARDAYGGGPARGPGPGAGSGGGYVSPDFLSEGSSSYHSASPDVDTADEPEVDVESNRFPDDEGTPDEAEPSAPGTGDVPDGDQPAGPPSATSSSADGPTDSPDGGSPHPRRRPGLLPTSRSAFGDPAADDMVRRSERSSPSGGYELREPCGPLGGPAPAKVYAPERDEHVKSAAAALGPAASYLCTPEAHEPDKEDNHSTADDLETRKSYPDQRSISQPSPANTDRGEDGLTLDVTGTQLVEKDIENLARDELQKLLLEQMELRKKLEREFQSLKDNFQDQMKRELAYREEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHHFSCKMLTPRHCTGNCSFKPPLLP", "length": 934, "header": "tr|F1SJH6-1|F1SJH6_PIG Isoform 1 of SKI family transcriptional corepressor 1 OS=Sus scrofa OX=9823 GN=SKOR1 PE=3 SV=4 CANONICAL=F1SJH6-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F7A9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJH6/entry#A0A8W4F7A9-1", "sequence": { "sequence": "MEALTTQLGPGREGSSSPNSKQELQPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLSDKSATDELSHAWEDVKAMFNGGTRKRTFSLQGGSGGANGGSGGQGKGGAGGGGSGGPGCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLAAGAGGPGGPGGPGGGTGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYSFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGAGTGAGAGGPGTGHLPPGAGAGPGSGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPPYPAAQSQAKAVAAAVAAAAAAAAAAAGGGGPEPLDGAEPAKEGSLVAEDRCPSALSRGPLDEDGAEDALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDAESIAKLYGSARDAYGGGPARGPGPGAGSGGGYVSPDFLSEGSSSYHSASPDVDTADEPEVDVESNRFPDDEGTPDEAEPSAPGTGDVPDGDQPAGPPSATSSSADGPTDSPDGGSPHPRRRPGLLPTSRSAFGDPAADDMVRRSERSSPSGGYELREPCGPLGGPAPAKVYAPERDEHVKSAAAALGPAASYLCTPEAHEPDKEDNHSTADDLETRKSYPDQRSISQPSPANTDRGEDGLTLDVTGTQLVEKDIENLARDELQKLLLEQMELRKKLEREFQSLKDNFQDQMKRELAYREEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHHFSCKMLTPRHCTGNCSFKPPLLP", "length": 923, "header": "tr|A0A8W4F7A9-1|F1SJH6_PIG Computationally mapped isoform of SKI family transcriptional corepressor 1 OS=Sus scrofa OX=9823 GN=SKOR1 PE=3 SV=1 CANONICAL=F1SJH6-1" }, "locus": { "chromosome": "1", "start_pos": 165761617, "end_pos": 165753859, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103610.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103610.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075099.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075099.1" } ] } }, { "isoform_ac": "F1SJH6-1", "url": "https://www.uniprot.org/uniprotkb/F1SJH6/entry#F1SJH6-1", "sequence": { "sequence": "MALLCGLGSGGMEALTTQLGPGREGSSSPNSKQELQPYSGSSALKPNQVGETSLYGVPIVSLVIDGQERLCLAQISNTLLKNYSYNEIHNRRVALGITCVQCTPVQLEILRRAGAMPISSRRCGMITKREAERLCKSFLGEHKPPKLPENFAFDVVHECAWGSRGSFIPARYNSSRAKCIKCGYCSMYFSPNKFIFHSHRTPDAKYTQPDAANFNSWRRHLKLSDKSATDELSHAWEDVKAMFNGGTRKRTFSLQGGSGGANGGSGGQGKGGAGGGGSGGPGCGAEMAPGPPPHKSLRCGEDEAAGPPGPPPPHPQRGLGLAAGAGGPGGPGGPGGGTGVRSYPVIPVPSKGFGLLQKLPPPLFPHPYSFPTAFGLCPKKDDPVLGAGEPKGGPGTGSGGGAGTGAGAGGPGTGHLPPGAGAGPGSGAMFWGHQPSGAAKDAAAVAAAAAAATVYPTFPMFWPAAGSLPVPPYPAAQSQAKAVAAAVAAAAAAAAAAAGGGGPEPLDGAEPAKEGSLVAEDRCPSALSRGPLDEDGAEDALPPPLAPLPPPPPPPARKGSYVSAFRPVVKDAESIAKLYGSARDAYGGGPARGPGPGAGSGGGYVSPDFLSEGSSSYHSASPDVDTADEPEVDVESNRFPDDEGTPDEAEPSAPGTGDVPDGDQPAGPPSATSSSADGPTDSPDGGSPHPRRRPGLLPTSRSAFGDPAADDMVRRSERSSPSGGYELREPCGPLGGPAPAKVYAPERDEHVKSAAAALGPAASYLCTPEAHEPDKEDNHSTADDLETRKSYPDQRSISQPSPANTDRGEDGLTLDVTGTQLVEKDIENLARDELQKLLLEQMELRKKLEREFQSLKDNFQDQMKRELAYREEMVQQLQIVRDTLCNELDQERKARYAIQQKLKEAHDALHHFSCKMLTPRHCTGNCSFKPPLLP", "length": 934, "header": "tr|F1SJH6-1|F1SJH6_PIG Isoform 1 of SKI family transcriptional corepressor 1 OS=Sus scrofa OX=9823 GN=SKOR1 PE=3 SV=4 CANONICAL=F1SJH6-1" }, "locus": { "chromosome": "1", "start_pos": 165761617, "end_pos": 165753522, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005468.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005468.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005331.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005331.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 680, "start_aa": "Thr", "end_pos": 680, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr680", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F7A9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7A9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" }, { "name": "negative regulation of BMP signaling pathway", "id": "GO:0030514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030514", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "SMAD binding", "id": "GO:0046332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046332", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SJH6", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 778, "end_pos": 780, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" }, { "start_pos": 925, "end_pos": 927, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJH6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 934, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJH6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJH6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJH6" }, { "id": "SM01046", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01046" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "c-SKI SMAD4-binding", "eco_id": "ECO_0000259", "start_pos": 152, "end_pos": 244, "start_aa": "Ala", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 680 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 173, "end_pos": 175 }, { "start_pos": 778, "end_pos": 780 }, { "start_pos": 82, "end_pos": 84 }, { "start_pos": 925, "end_pos": 927 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPI5-1", "uniprot_ac": "F1SPI5", "uniprot_id": "F1SPI5_PIG", "mass": { "chemical_mass": 160900.0, "monoisotopic_mass": 160900.0 }, "refseq": {}, "gene_names": [ { "name": "FGD5", "type": "recommended", "evidence": [ { "id": "F1SPI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" } ] } ], "protein_names": [ { "name": "FYVE, RhoGEF and PH domain containing 5", "type": "synonym", "evidence": [ { "id": "F1SPI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPI5", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FGD5", "url": "https://www.uniprot.org/uniprotkb/F1SPI5", "locus": { "chromosome": "13", "start_pos": 69594223, "end_pos": 69724056, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011598", "url": "https://www.ensembl.org/id/ENSSSCG00000011598" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011598", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011598", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13237", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13237", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15742", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15742", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15792", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15792", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000306", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000306", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051092", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051092", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12673", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12673", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12673:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12673:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01363", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01363", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4F9P6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9P6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9P6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9P6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKR4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLB9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPT8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPI5", "url": "https://www.uniprot.org/uniprotkb/F1SPI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPI5-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRADSPKPPLAPKPKTASPLTPVTAPKFPSARPESLHSPNSMSRGPKPPIAPKPRLATPSEWRASVYMINSLNKCSNGKLPCADKGLCEERRSNPECSESEADEDYILAPGAVPQEDGPRAGGSAEDKVSVPLEASGEETGQEGGKECEQEGTATAEDLVSPAEAVQSGESDEDLTPEFEGAEEQRFMSEEEAKLVEEYSECILEDGGPRDGEAAFLSNMSLLDLHVEDPAARGEEPGTPGEAEEDGEESCANTEPGALDACLDSNSPIERNAEDAEEEPLEDEGLVTGIPEAEAATLSPETSLEVCGDTPGSGGEDADDEPCDPEETAALAQGAGGDPGGDEDAVPDEAAEESCQIIPFESDCLDDFVAPLSESPYEFFPTESTSFCSESYTPLPESVEGPESEQVLQSGQQAEQDPGAGAGCGQHGSRPSGAEERPCVPNVVVLSEDDDALDDALTNPYEMGVGLVCREDQGDGAMLEAQASLDAPSGYDVKDEVSSDAEGGSLPVDRKNVIVRARPHSGKVAGYVPETVPEETGPEAGSSAVGVAGATQEARKTVLPLEGKPLDISRALPAKPRAFTLYPRSFSVEGREIPMSLYREPEACSLDDHRIKRKDDNLSLPCMIGSSGSFSQRGHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLVESEPPDKHSKKKKPSFKRFLALTFKKKTDSKVHVDVNVSSSRSSSESSYHGPARLLEMDRRSLSNSPQLRARTGKPRACDSPSSLIFYRDGKRKGVPFSRTVSRVESFEDRSRPPFLPLPLTKPRSISFPNADTSDYENIPAMNSDYENIQLPPRRPARAGTFTKLFEEQSRALSAANENDGYVDMSSFNAFESKPQSADQEAESAYTEPYKVCPISAAAPKEDLTSDDEQGSSDEEDTAPRDPSLTQKVEGQSRAHVILPVALSLWGFQDFYGAVTRALDETDQEGKDVPAREELRRGLSELPAIRDLHQGILEELEERLLDGQQKVADVFLAREQGFDHHATHILQFDRSLSLLSESCLHCPRLAAAVREFEQSQQGGGQNVKHRLLRVVQRLFQYQVLLTGRPRGRSGCTRAVGKRRQGEKMWPGENLQKLVHIEHSVRGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLMSDVLLYTYPQKDGKYRLKNTLAVASMKVSRPVMEKVPYALKIETSESCLTLSASSCAERDEWHSCLSRALPEDYKAQALAAFQHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCYAELKKRGGDIPGLMKERPVSMSFPLSSPRFSSSAFSSVFHSINPSAFKKQKKVSSALTEVAASGEGCTISGYLSRCKKGKRHWKKLWFVIKGKVLYTYMASEDTAAMESIPLLGFTIAPEKEEGSSEVGPIFHLYHKKTLFYSFKAEDTKSAQRWIEAMEDASVL", "length": 1476, "header": "tr|F1SPI5-1|F1SPI5_PIG Isoform 1 of FYVE, RhoGEF and PH domain containing 5 OS=Sus scrofa OX=9823 GN=FGD5 PE=4 SV=4 CANONICAL=F1SPI5-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F9P6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI5/entry#A0A8W4F9P6-1", "sequence": { "sequence": "MVEGQGLRDGDCKECEQEGTATAEDLVSPAEAVQSGESDEDLTPEFEGAEEQRFMSEEEAKLVEEYSECILEDGGPRDGEAAFLSNMSLLDLHVEDPAARGEEPGTPGEAEEDGEESCANTEPGALDACLDSNSPIERNAEDAEEEPLEDEGLVTGIPEAEAATLSPETSLEVCGDTPGSGGEDADDEPCDPEETAALAQGAGGDPGGDEDAVPDEAAEESCQIIPFESDCLDDFVAPLSESPYEFFPTESTSFCSESYTPLPESVEGPESEQVLQSGQQAEQDPGAGAGCGQHGSRPSGAEERPCVPNVVVLSEDDDALDDALTNPYEMGVGLVCREDQGDGAMLEAQASLDAPSGYDVKDEVSSDAEGGSLPVDRKNVIVRARPHSGKVAGYVPETVPEETGPEAGSSAVGVAGATQEARKTVLPLEGKPLDISRALPAKPRAFTLYPRSFSVEGREIPMSLYREPEACSLDDHRIKRKDDNLSLPCMIGSSGSFSQRGHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLVESEPPDKHSKKKKPSFKRFLALTFKKKTDSKVHVDVNVSSSRSSSESSYHGPARLLEMDRRSLSNSPQLRARTGKPRACDSPSSLIFYRDGKRKGVPFSRTVSRVESFEDRSRPPFLPLPLTKPRSISFPNADTSDYENIPAMNSDYENIQLPPRRPARAGTFTKLFEEQSRALSAANENDGYVDMSSFNAFESKPQSADQEAESAYTEPYKVCPISAAAPKEDLTSDDEQGSSDEEDTAPRDPSLTQKVEGQSRAHVILPVALSLWGFQDFYGAVTRALDETDQEGKDVPAREELRRGLSELPAIRDLHQGILEELEERLLDGQQKVADVFLAREQGFDHHATHILQFDRSLSLLSESCLHCPRLAAAVREFEQSQQGGGQNVKHRLLRVVQRLFQYQVLLTGRPRALTISSPCSHLQENLQKLVHIEHSVRGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLMSDVLLYTYPQKDGKYRLKNTLAVASMKVSRPVMEKVPYALKIETSESCLTLSASSCAERDEWHSCLSRALPEDYKAQALAAFQHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCYAELKKRGGDIPGLMKERPVSMSFPLSSPRFSSSAFSSVFHSINPSAFKKQKKVSSALTEVAASGEGCTISGYLSRCKKGKRHWKKLWFVIKGKVLYTYMASEDTAAMESIPLLGFTIAPEKEEGSSEVGPIFHLYHKKTLFYSFKAEDTKSAQRWIEAMEDASVL", "length": 1333, "header": "tr|A0A8W4F9P6-1|F1SPI5_PIG Computationally mapped isoform of FYVE, RhoGEF and PH domain containing 5 OS=Sus scrofa OX=9823 GN=FGD5 PE=4 SV=1 CANONICAL=F1SPI5-1" }, "locus": { "chromosome": "13", "start_pos": 69716068, "end_pos": 69595376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094521.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094521.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075556.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075556.1" } ] } }, { "isoform_ac": "A0A8W4FKR4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI5/entry#A0A8W4FKR4-1", "sequence": { "sequence": "MGRNAEDAEEEPLEDEGLVTGIPEAEAATLSPETSLEVCGDTPGSGGEDADDEPCDPEETAALAQGAGGDPGGDEDAVPDEAAEESCQIIPFESDCLDDFVAPLSESPYEFFPTESTSFCSESYTPLPESVEGPESEQVLQSGQQAEQDPGAGAGCGQHGSRPSGAEERPCVPNVVVLSEDDDALDDALTNPYEMGVGLVCREDQGDGAMLEAQASLDAPSGYDVKDEVSSDAEGGSLPVDRKNVIVRARPHSGKVAGYVPETVPEETGPEAGSSAVGVAGATQEARKTVLPLEGKPLDISRALPAKPRAFTLYPRSFSVEGREIPMSLYREPEACSLDDHRIKRKDDNLSLPCMIGSSGSFSQRGHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLVESEPPDKHSKKKKPSFKRFLALTFKKKTDSKVHVDVNVSSSRSSSESSYHGPARLLEMDRRSLSNSPQLRARTGKPRACDSPSSLIFYRDGKRKGVPFSRTVSRVESFEDRSRPPFLPLPLTKPRSISFPNADTSDYENIPAMNSDYENIQLPPRRPARAGTFTKLFEEQSRALSAANENDGYVDMSSFNAFESKPQSADQEAESAYTEPYKVCPISAAAPKEDLTSDDEQGSSDEEDTAPRDPSLTQKVEGQSRAHVILPVALSLWGFQDFYGAVTRALDETDQEGKDVPAREELRRGLSELPAIRDLHQGILEELEERLLHWDGQQKVADVFLAREQGFDHHATHILQFDRSLSLLSESCLHCPRLAAAVREFEQSQQGGGQNVKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDDTQGALSLISKVTDHANDSMEQGENLQKLVHIEHSVRGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLMSDVLLYTYPQKDGKYRLKNTLAVASMKVSRPVMEKVPYALKIETSESCLTLSASSCAERDEWHSCLSRALPEDYKAQALAAFQHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCYAELKKRGGDIPGLMKERPVSMSFPLSSPRFSSSAFSSVFHSINPSAFKKQKKVSSALTEDTAAMESIPLLGFTIAPEKEEGSSEVGPIFHLYHKKTLFYSFKAEDTKSAQRWIEAMEDASVL", "length": 1178, "header": "tr|A0A8W4FKR4-1|F1SPI5_PIG Computationally mapped isoform of FYVE, RhoGEF and PH domain containing 5 OS=Sus scrofa OX=9823 GN=FGD5 PE=4 SV=1 CANONICAL=F1SPI5-1" }, "locus": { "chromosome": "13", "start_pos": 69715049, "end_pos": 69595376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101387.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101387.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079924.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079924.1" } ] } }, { "isoform_ac": "A0A8W4FLB9-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI5/entry#A0A8W4FLB9-1", "sequence": { "sequence": "MGRNAEDAEEEPLEDEGLVTGIPEAEAATLSPETSLEVCGDTPGSGGEDADDEPCDPEETAALAQGAGGDPGGDEDAVPDEAAEESCQIIPFESDCLDDFVAPLSESPYEFFPTESTSFCSESYTPLPESVEGPESEQVLQSGQQAEQDPGAGAGCGQHGSRPSGAEERPCVPNVVVLSEDDDALDDALTNPYEMGVGLVCREDQGDGAMLEAQASLDAPSGYDVKDEVSSDAEGGSLPVDRKNVIVRARPHSGKVAGYVPETVPEETGPEAGSSAVGVAGATQEARKTVLPLEGKPLDISRALPAKPRAFTLYPRSFSVEGREIPMSLYREPEACSLDDHRIKRKDDNLSLPCMIGSSGSFSQRGHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLVESEPPDKHSKKKKPSFKRFLALTFKKKTDSKVHVDVNVSSSRSSSESSYHGPARLLEMDRRSLSNSPQLRARTGKPRACDSPSSLIFYRDGKRKGVPFSRTVSRVESFEDRSRPPFLPLPLTKPRSISFPNADTSDYENIPAMNSDYENIQLPPRRPARAGTFTKLFEEQSRALSAANENDGYVDMSSFNAFESKPQSADQEAESAYTEPYKVCPISAAAPKEDLTSDDEQGSSDEEDTAPRDPSLTQKVEGQSRAHVILPVALSLWGFQDFYGAVTRALDETDQEGKDVPAREELRRGLSELPAIRDLHQGILEELEERLLHWDGQQKVADVFLAREQGFDHHATHILQFDRSLSLLSESCLHCPRLAAAVREFEQSQQGGGQNVKHRLLRVVQRLFQYQVLLTDYLNNLCPDSAEYDDTQGALSLISKVTDHANDSMEQGENLQKLVHIEHSVRGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLMSDVLLYTYPQKDGKYRLKNTLAVASMKVSRPVMEKVPYALKIETSESCLTLSASSCAERDEWHSCLSRALPEDYKAQALAAFQHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCYAELKKRGGDIPGLMKERPVSMSFPLSSPRFSSSAFSSVFHSINPSAFKKQKKVSSALTEVAASGEGCTISGYLSRCKKGKRHWKKLWFVIKGKVLYTYMASEDTAAMESIPLLGFTIAPEKEEGSSEVGPIFHLYHKKTLFYSFKAEDTKSAQRWIEAMEDASVL", "length": 1221, "header": "tr|A0A8W4FLB9-1|F1SPI5_PIG Computationally mapped isoform of FYVE, RhoGEF and PH domain containing 5 OS=Sus scrofa OX=9823 GN=FGD5 PE=4 SV=1 CANONICAL=F1SPI5-1" }, "locus": { "chromosome": "13", "start_pos": 69715049, "end_pos": 69595376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102982.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102982.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080271.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080271.1" } ] } }, { "isoform_ac": "A0A8W4FPT8-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI5/entry#A0A8W4FPT8-1", "sequence": { "sequence": "MINSLNKCSNGKLPCADKGLCEERRSNPECSESEADEDYILAPGAVPQEDGPRAGGSAEDKVSVPLEANTPGSGGEDADDEPCDPEETAALAQGAGGDPGGDEDAVPDEAAEESCQIIPFESDCLDDFVAPLSESPYEFFPTESTSFCSESYTPLPESVEGPESEQVLQSGQQAEQDPGAGAGCGQHGSRPSGAEERPCVPNVVVLSEDDDALDDALTNPYEMGVGLVCREDQGDGAMLEAQASLDAPSGYDVKDEVSSDAEGGSLPVDRKNVIVRARPHSGKVAGYVPETVPEETGPEAGSSAVGVAGATQEARKTVLPLEGKPLDISRALPAKPRAFTLYPRSFSVEGREIPMSLYREPEACSLDDHRIKRKDDNLSLPCMIGSSGSFSQRGHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLVESEPPDKHSKKKKPSFKRFLALTFKKKTDSKVHVDVNVSSSRSSSESSYHGPARLLEMDRRSLSNSPQLRARTGKPRACDSPSSLIFYRDGKRKGVPFSRTVSRVESFEDRSRPPFLPLPLTKPRSISFPNADTSDYENIPAMNSDYENIQLPPRRPARAGTFTKLFEEQSRALSAANENDGYVDMSSFNAFESKPQSADQEAESAYTEPYKVCPISAAAPKEDLTSDDEQGSSDEEDTAPRDPSLTQKVEGQSRAHVILPVALSLWGFQDFYGAVTRALDETDQEGKDVPAREELRRGLSELPAIRDLHQGILEELEERLLDGQQKVADVFLAREQGFDHHATHILQFDRSLSLLSESCLHCPRLAAAVREFEQSQQGGGQNVKHRLLRVVQRLFQYQVLLTGRPRALTISSPCSHLQENLQKLVHIEHSVRGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLMSDVLLYTYPQKDGKYRLKNTLAVASMKVSRPVMEKVPYALKIETSESCLTLSASSCAERDEWHSCLSRALPEDYKAQALAAFQHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCYAELKKRGGDIPGLMKERPVSMSFPLSSPRFSSSAFSSVFHSINPSAFKKQKKVSSALTEVAASGEGCTISGYLSRCKKGKRHWKKLWFVIKGKVLYTYMASEDTAAMESIPLLGFTIAPEKEEGSSEVGPIFHLYHKKTLFYSFKAEDTKSAQRWIEAMEDASVL", "length": 1226, "header": "tr|A0A8W4FPT8-1|F1SPI5_PIG Computationally mapped isoform of FYVE, RhoGEF and PH domain containing 5 OS=Sus scrofa OX=9823 GN=FGD5 PE=4 SV=1 CANONICAL=F1SPI5-1" }, "locus": { "chromosome": "13", "start_pos": 69715464, "end_pos": 69595376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097074.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097074.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080335.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080335.1" } ] } }, { "isoform_ac": "F1SPI5-1", "url": "https://www.uniprot.org/uniprotkb/F1SPI5/entry#F1SPI5-1", "sequence": { "sequence": "MNRADSPKPPLAPKPKTASPLTPVTAPKFPSARPESLHSPNSMSRGPKPPIAPKPRLATPSEWRASVYMINSLNKCSNGKLPCADKGLCEERRSNPECSESEADEDYILAPGAVPQEDGPRAGGSAEDKVSVPLEASGEETGQEGGKECEQEGTATAEDLVSPAEAVQSGESDEDLTPEFEGAEEQRFMSEEEAKLVEEYSECILEDGGPRDGEAAFLSNMSLLDLHVEDPAARGEEPGTPGEAEEDGEESCANTEPGALDACLDSNSPIERNAEDAEEEPLEDEGLVTGIPEAEAATLSPETSLEVCGDTPGSGGEDADDEPCDPEETAALAQGAGGDPGGDEDAVPDEAAEESCQIIPFESDCLDDFVAPLSESPYEFFPTESTSFCSESYTPLPESVEGPESEQVLQSGQQAEQDPGAGAGCGQHGSRPSGAEERPCVPNVVVLSEDDDALDDALTNPYEMGVGLVCREDQGDGAMLEAQASLDAPSGYDVKDEVSSDAEGGSLPVDRKNVIVRARPHSGKVAGYVPETVPEETGPEAGSSAVGVAGATQEARKTVLPLEGKPLDISRALPAKPRAFTLYPRSFSVEGREIPMSLYREPEACSLDDHRIKRKDDNLSLPCMIGSSGSFSQRGHLPSSGTSTPSSVVDIPPPFDLACITKKPITKSSPSLLVESEPPDKHSKKKKPSFKRFLALTFKKKTDSKVHVDVNVSSSRSSSESSYHGPARLLEMDRRSLSNSPQLRARTGKPRACDSPSSLIFYRDGKRKGVPFSRTVSRVESFEDRSRPPFLPLPLTKPRSISFPNADTSDYENIPAMNSDYENIQLPPRRPARAGTFTKLFEEQSRALSAANENDGYVDMSSFNAFESKPQSADQEAESAYTEPYKVCPISAAAPKEDLTSDDEQGSSDEEDTAPRDPSLTQKVEGQSRAHVILPVALSLWGFQDFYGAVTRALDETDQEGKDVPAREELRRGLSELPAIRDLHQGILEELEERLLDGQQKVADVFLAREQGFDHHATHILQFDRSLSLLSESCLHCPRLAAAVREFEQSQQGGGQNVKHRLLRVVQRLFQYQVLLTGRPRGRSGCTRAVGKRRQGEKMWPGENLQKLVHIEHSVRGQGDLLQPGREFLKEGTLMKVTGKNRRPRHLFLMSDVLLYTYPQKDGKYRLKNTLAVASMKVSRPVMEKVPYALKIETSESCLTLSASSCAERDEWHSCLSRALPEDYKAQALAAFQHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCYAELKKRGGDIPGLMKERPVSMSFPLSSPRFSSSAFSSVFHSINPSAFKKQKKVSSALTEVAASGEGCTISGYLSRCKKGKRHWKKLWFVIKGKVLYTYMASEDTAAMESIPLLGFTIAPEKEEGSSEVGPIFHLYHKKTLFYSFKAEDTKSAQRWIEAMEDASVL", "length": 1476, "header": "tr|F1SPI5-1|F1SPI5_PIG Isoform 1 of FYVE, RhoGEF and PH domain containing 5 OS=Sus scrofa OX=9823 GN=FGD5 PE=4 SV=4 CANONICAL=F1SPI5-1" }, "locus": { "chromosome": "13", "start_pos": 69723915, "end_pos": 69595376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012695.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012695.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012362.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012362.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 59, "start_aa": "Thr", "end_pos": 59, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr59", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 951, "start_aa": "Thr", "end_pos": 951, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr951", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F9P6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9P6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SPI5", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SPI5", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SPI5", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SPI5", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1SPI5", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1288, "end_pos": 1290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 220, "end_pos": 222, "annotation": "n_glycosylation_sequon" }, { "start_pos": 618, "end_pos": 620, "annotation": "n_glycosylation_sequon" }, { "start_pos": 711, "end_pos": 713, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 974, "end_pos": 1076, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" }, { "id": "PS50178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FYVE-type", "eco_id": "ECO_0000259", "start_pos": 1262, "end_pos": 1315, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPI5" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 1127, "end_pos": 1221, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 59, 951 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1288, "end_pos": 1290 }, { "start_pos": 220, "end_pos": 222 }, { "start_pos": 618, "end_pos": 620 }, { "start_pos": 711, "end_pos": 713 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGY7-1", "uniprot_ac": "F1SGY7", "uniprot_id": "F1SGY7_PIG", "mass": { "chemical_mass": 80492.0, "monoisotopic_mass": 80492.0 }, "refseq": { "ac": "XP_001924942", "name": "pseudouridylate synthase 7 homolog-like protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924942" }, "gene_names": [ { "name": "PUS7L", "type": "recommended", "evidence": [ { "id": "F1SGY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGY7" } ] }, { "name": "PUS7L", "type": "synonym", "evidence": [ { "id": "XP_001924942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924942" } ] } ], "protein_names": [ { "name": "Pseudouridylate synthase PUS7L", "type": "recommended", "evidence": [ { "id": "F1SGY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGY7/entry#names_and_taxonomy" } ] }, { "name": "Pseudouridylate synthase 7 homolog-like protein", "type": "synonym", "evidence": [ { "id": "F1SGY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGY7/entry#names_and_taxonomy" } ] }, { "name": "pseudouridylate synthase 7 homolog-like protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001924942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924942" } ] } ], "function": [ { "annotation": "Pseudouridine synthase that catalyzes pseudouridylation of mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FAM2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAM2#function" }, { "database": "UniProtKB", "id": "ARBA00057241", "url": "https://www.uniprot.org/uniprotkb/ARBA00057241#function" }, { "database": "UniProtKB", "id": "F1SGY7", "url": "https://www.uniprot.org/uniprotkb/F1SGY7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGY7", "url": "https://www.uniprot.org/uniprotkb/F1SGY7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PUS7L", "url": "https://www.uniprot.org/uniprotkb/F1SGY7", "locus": { "chromosome": "5", "start_pos": 74806152, "end_pos": 74834428, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000800", "url": "https://www.ensembl.org/id/ENSSSCG00000000800" } ] } } ], "crossref": [ { "id": "F1SGY7", "url": "https://alphafold.ebi.ac.uk/entry/F1SGY7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000800", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000800", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02576", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02576", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155187", "url": "https://www.ncbi.nlm.nih.gov/gene/100155187", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155187", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155187", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FPNNKVH", "url": "https://omabrowser.org/oma/group/FPNNKVH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGY7", "url": "https://www.orthodb.org/?gene=F1SGY7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13326", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13326", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13326:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13326:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01142", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01142", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23943", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23943", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001924942", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924942", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "56644", "url": "https://www.rhea-db.org/rhea/56644", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FAM2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGY7", "url": "https://www.uniprot.org/uniprotkb/F1SGY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGY7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEDTDFRIRFNSLCFITDHVGFHGTIKSSPSDFVVIEIDEQGQLVNKASDEHVYKVHKVLPEPNNLAKKPKLDLQNVSFEERSNQEVKTSAGCSDDDQNYEPASEKADTIKDGILRGEKEHLDVFGSLLDEKTNELLNQYAGDIKEKWNSKTELIGPSPEFSLGRILDKNQRATLHSAVRQKFPFLITVGKNSEIVVKPNLECKELCHLVSEEEAFGFFKYLDARKENSKFTFKSDTDKEHRKAVHHFVNKKFGNLVETKSFPELNYGADNPNVVITVRFREKAHKHKKRSLHECPERKVIHTAFTLRKENLEMFEAVGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKELEKKRMNILNIRSVDDSLRLGQLKGNHFDIVIRNLKNQINDSTSLRERILEAIENVKNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSEMVKAVKLFLTPEDSDDPVNRAKKYFLQTDDAKGTLSLMPEFKVRERALLESLHRFGMTEEGCVQAWFSFPHSMRIFYVHAYSSKIWNEAASYRLATYGSRVVEGDLVCLEEDVDDEHLPSSKVHLVTEEDESANTYAIHQVVLPVLGYNIQYPKNKVGQWYQEVLSRDGLQTCRFKIPPLKLNVPGCYRKILKHPHNLSYQLIEDADIDVKKDGSHIDEATVSLLISFDLDASCYATVCLREIMKHDF", "length": 702, "header": "tr|F1SGY7-1|F1SGY7_PIG Isoform 1 of Pseudouridylate synthase PUS7L OS=Sus scrofa OX=9823 GN=PUS7L PE=3 SV=2 CANONICAL=F1SGY7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FAM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SGY7/entry#A0A8W4FAM2-1", "sequence": { "sequence": "MEEDTDFRIRFNSLCFITDHVGFHGTIKSSPSDFVVIEIDEQGQLVNKASDEHVYKVHKVLPEPNNLAKKPKLDLQNVSFEERSNQEVKTSAGCSDDDQNYEPASEKADTIKDGILRGEKEHLDVFGSLLDEKTNELLNQYAGDIKEKWNSKTELIGPSPEFSLGRILDKNQRATLHSAVRQKFPFLITVGKNSEIVVKPNLECKELCHLVSEEEAFGFFKYLDARKENSKFTFKSDTDKEHRKAVHHFVNKKFGNLVETKSFPELNYGADNPNVVITVRFREKAHKHKKRSLHECPERKVIHTAFTLRKENLEMFEAVGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKELEKKRMNILNIRSVDDSLRLGQLKGNHFDIVIRNLKNQINDSTSLRERILEAIENVKVKAVKLFLTPEDSDDPVNRAKKYFLQTDDAKGTLSLMPEFKVRERALLESLHRFGMTEEGCVQAWFSFPHSMRIFYVHAYSSKIWNEAASYRLATYGSRVVEGDLVCLEEDVDDEHLPSSKVHLVTEEDESANTYAIHQVVLPVLGYNIQYPKNKVGQWYQEVLSRDGLQTCRFKIPPLKLNVPGCYRKILKHPHNLSYQLIEDADIDVKKDGSHIDEATVSLLISFDLDASCYATVCLREIMKHDF", "length": 669, "header": "tr|A0A8W4FAM2-1|F1SGY7_PIG Computationally mapped isoform of Pseudouridylate synthase PUS7L OS=Sus scrofa OX=9823 GN=PUS7L PE=3 SV=1 CANONICAL=F1SGY7-1" }, "locus": { "chromosome": "5", "start_pos": 74831029, "end_pos": 74806179, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103658.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103658.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075890.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075890.1" } ] } }, { "isoform_ac": "F1SGY7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGY7/entry#F1SGY7-1", "sequence": { "sequence": "MEEDTDFRIRFNSLCFITDHVGFHGTIKSSPSDFVVIEIDEQGQLVNKASDEHVYKVHKVLPEPNNLAKKPKLDLQNVSFEERSNQEVKTSAGCSDDDQNYEPASEKADTIKDGILRGEKEHLDVFGSLLDEKTNELLNQYAGDIKEKWNSKTELIGPSPEFSLGRILDKNQRATLHSAVRQKFPFLITVGKNSEIVVKPNLECKELCHLVSEEEAFGFFKYLDARKENSKFTFKSDTDKEHRKAVHHFVNKKFGNLVETKSFPELNYGADNPNVVITVRFREKAHKHKKRSLHECPERKVIHTAFTLRKENLEMFEAVGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKELEKKRMNILNIRSVDDSLRLGQLKGNHFDIVIRNLKNQINDSTSLRERILEAIENVKNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSEMVKAVKLFLTPEDSDDPVNRAKKYFLQTDDAKGTLSLMPEFKVRERALLESLHRFGMTEEGCVQAWFSFPHSMRIFYVHAYSSKIWNEAASYRLATYGSRVVEGDLVCLEEDVDDEHLPSSKVHLVTEEDESANTYAIHQVVLPVLGYNIQYPKNKVGQWYQEVLSRDGLQTCRFKIPPLKLNVPGCYRKILKHPHNLSYQLIEDADIDVKKDGSHIDEATVSLLISFDLDASCYATVCLREIMKHDF", "length": 702, "header": "tr|F1SGY7-1|F1SGY7_PIG Isoform 1 of Pseudouridylate synthase PUS7L OS=Sus scrofa OX=9823 GN=PUS7L PE=3 SV=2 CANONICAL=F1SGY7-1" }, "locus": { "chromosome": "5", "start_pos": 74831029, "end_pos": 74806179, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065568.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065568.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036173.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036173.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FAM2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155187", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155187", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X3V2-1", "protein_name": "Pseudouridylate synthase PUS7L", "gene_name": "PUS7L", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGPGTADGRGKAVAAGRAAMLRSLSYVTDHTGFRGTIKKAPADFVVRELELPQRPAAPRDVSPPAGGPPAASATASAGAGSTVGPARCDPVTYPEQSRCAAGLKSGPEAAALLDSLLGKPASERLTKFACDLKEAWDSETGCDAGAGEFSLGAVVDKRDRADLHGAIRQRFPFLVTVTKDNEMVVKGNADYRELCQLVTEKETSDFFKFLDAKLENSTFSFEPDGNKEHRKIVHHFINKKFGKILETKSFTVADVGCEPNMSIIVRFRGRSCSRKRSADGFQIKQDLYTAFTLQKENLETLEAISFLAAELGVLPSDFSYSGIKDKKAITYQLMVVKKVTPERLKEIESKLEKKGMRIHNIHSAQQHLRLGQLRGNHFDIVVRDLKHHSHDSPVDLKERISEAMENIEAKGFVNYYGPQRFGQGQNVQTDQIGLALLNEKMVKAVKLFFTPEDTDDPVNNAKRYFLQTEDAKGTLTMLPEFKVREKMLLRALHRYGVNQEGCIKGWLSIPHSVRIFYVHAYCSQIWNEATSYRLKTYGSKVVEGDLVFSEENDESLSLNDKVHVVTALEESASKYSMHQVVLPMVGHSIKYPSNKVGQWYRERLSKDELQMCKFRVPPLQLNIPGCYRHILKNVQNLSYFLEGNEEGSKIEDNHLNESKVSLHISFDLDPSCYATVCLREIMKCDF", "length": 687 }, "evidence": [ { "id": "F1SGY7", "url": "https://omabrowser.org/oma/group/F1SGY7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LC41-1", "protein_name": "Pseudouridylate synthase PUS7L", "gene_name": "Pus7l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGYPWVQDWWTREEGVVVVAEEAGWGGSGGSLRILRSPCGAEEELLPPSSHVPAFAVCLFTSCLAARHLSCTVSTSSPESLPVDFVFLQSLGFRRPLWTWSELPLETPPRDRCQSLTGCSLPFLAPLIMEEDADDGIRSGSLCFINDHVGFQGSIKTSPGDFIVTEIDEQGRLVSKATDEPLREFSKTQPEPSNCQVKKPKLNTQTVDLDCENNKEAAKSPGHSPAGRSEGDRVQPAGSDRDSEKENSVRCATSKCEVESVGLLSSLLDESTHTSLDHFARDVKEMWNSSTELTEPSPELSLGRILDKRQRAALHSAVRQTFPFLITVGNNSEVVVKPSLEYKELSHLVSEEEALGFFRYLDAKKENSKFTFQPDPNKDHRKAVHHFLNKKFGNLVETKSFPGQSHSAGNPNTAITVRFREKAHGKRAHPEGKRRRAVYTAFTLQKENLEMFEAIGFLAIQLGVIPSDFSYAGLKDKKAITYQSMVVRKVTPERLKTIEEEIKKKRMNVFNVRSVDDSLRLGQLKGNHFEIIIRNLRNQPNDSANLRERVLEAIENVKNKGFVNYYGPQRFGKGKKIQTDRIGLALLKNEMVKAIKLFLTPEDADDPVNKAKKYFLQTEDAKGTLSLMPEFRVRERALLESLHRFGVTEEGCVQAWFSFPHSMRIFYIHAYSSRIWNEAASYRLAAYGPKVVKGDLVCLDEDADEHLPSSKVHLVTEEEESADTYALHQVVLPVLGYNVQYPENKVGRWYQGVLGRDGLQACRFRVPALKLNVPGCYRHIVKHPHNVSHRLVHPDPAELRAEGPHADDTASSLALSFDLDASCYATVCLREMMKDDI", "length": 838 }, "evidence": [ { "id": "F1SGY7", "url": "https://omabrowser.org/oma/group/F1SGY7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BGT6-1", "protein_name": "Pseudouridylate synthase PUS7L", "gene_name": "PUS7L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEEDTDFRIRFSSLCFITDHVGFCGTIKSSPSDFIVIEIDEQGELVNKESDKLVYEVSKVLPEPNTLAKKAKLDLQILSFEETSNQEVSTLAGSSSDDHNFVPCSEKEDTIKYRTYKGEEENVDVLGSLLDEKTNELLNQFACNIKEKWDSKTELIGPSPEFSLGRILDKNQRATLHSAIRQKFPFLITVGKNSEIVVRPNLEYKELCHLVSEEEAFDFFKYLDAKKENSKFTFKPDTNKEHRKAVHHFVNKKFGNLVETKSFPELNDSADNPNVVITVRFRVKAHKHCKRSLLECQGRKDIYTAFTLRKENLEMFEAVGFLAVKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEVEKKRMNVFNIRSVEDSLRLGQLKGNHFDIVIRNLKNQINDSANLRERILEAIENVKNKGFVNYYGPQRFGMGRKVHTDQIGLALLKSETVKAVKLFFTPEDLDDPVNRAKKYFLQTEDAKGTLALMPEFKVRERALLESLHRFGVTEEGYIQAWFSFPHSLRIFYVHAYSSKIWNEAVSYRLETYGSRVVEGDLVCLDEDADNEQLPSSKVHLVTEEEESANTYAIHQVVLPVLGCNIQYPKNKVGQWYQEVLSRDGLQTCKFKIPTLKLNVPGCYRKILKHPCNLSYQLMEDHGIDVKKEGSHIDEATLSLLISFDLDASCYATVCLREIMKHDF", "length": 702 }, "evidence": [ { "id": "F1SGY7", "url": "https://omabrowser.org/oma/group/F1SGY7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q1L8I0-1", "protein_name": "Pseudouridylate synthase PUS7L", "gene_name": "pus7l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MERNTLSCFISDHEGFNGTIKNSPQDFVVIEIDTNGQFVNSVNTEEEERPCQTTKRIGKLKPSKPDDTDSLIQDCFDLNLILGLSVNRELEHFTNKLKVKPCSDDQEKVELSLGTFPDKHMRAVVHKAVRFNFPFLQTLTNQSEIRVREDPDFQELAGLASEGEAEDFFRFIDAKTPGSVFTFLPDDSKEHRTSVHHFVSRRFGKLVETKSFVDQQKTCITVRLRERGKQAKKRTMADCQMQEESLYTAFTLRKENLETLEAISYMAAVLGVLPSDFTYAGIKDKRAITYQAMVVKKISPERLLEKGSEFERRGMEISRVRPAFEALKLGRLQGNHFELVIRDLKHHGKHGLAELPKVIEEAVENVKNKGFVNYYGPQRFGSGSCVQADQVGLALLKENMEASVKLFFTPEDDDDLQNKAKRHFLHTGNAKESLVLMPAYKARERLMLRALHRYGSGQEGCTRGWLSLPHSMRVFYLHSYCSRVWNQAAKYRLQKLGFKPVQGDLVWAEPVKGLKDATEELSAPQIHVVTSDEEKNEVFSLDQVILPMPGNSVKYPENLLGQWYQDRLAQDGLESCRFRVTPLKLNVPGCYRPLLAKPQNITYSLQTSSSDESNTHCLSLNFDLEASCYATVCLGEIMKTNLS", "length": 643 }, "evidence": [ { "id": "F1SGY7", "url": "https://omabrowser.org/oma/group/F1SGY7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8CE46-1", "protein_name": "Pseudouridylate synthase PUS7L", "gene_name": "Pus7l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEDTDGGIRFNSLCFINDHVGFQGSIKTSPSDFIVIEIDEQGQLVSKATDGSLYEISKIQSEPSNSVKKPKLNIQNVSLEHKNSEGAADLPGCSDGDRSHQSDSEKENSVNSVTSKCEEESVDLLRSLLDEKTHTSLGQFACDIKRMWNSQTELTEPSPELSLGKILDKNRRAVLHSAVRQAFPFLITVGNQGEVVVKPNRECKELCRLVSEEEALGFFKYLDAKKENSKFTFKPDPNKDHRKAVHHFLNKKFGNLVETKSFPGQHHSAGNPDSAITVRFREKARGKRSHPEGCERGKAVYTAFTLQKENLETFEAIGLLAVKLGVIPSDFSYAGLKDKRAITYQSMVVKKVTPERLKSIKEEIEKKRMNVFNIRSVGDCLRLGQLKGNHFEIIIRHLRNQLNDSANLTERILEAIENVKNKGFVNYYGPQRFGKGQKIQTDQIGLALLKNEMVKAIKLFLTPEDVDDPVNKAKQYFLRTEDAKGTLSLMPEFRVRERALLESLHRFGVTEEGCVRAWFSFPHSMRIFYIHAYSSRIWNEAASYRLAAYGPKVVEGDLICSDEDADKHFPSSKVHLVTKEEESAHTYALHQVVLPVLGYNVQYPENQVGRWYQEALSRDGLQACRFRVPALKLNVPGCYRHIVKHPRNVSHRLVHPDPATEEARVEGPHSDDTASSLSLSFDLDASCYATVCLREMMKGDI", "length": 702 }, "evidence": [ { "id": "F1SGY7", "url": "https://omabrowser.org/oma/group/F1SGY7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H0K6-1", "protein_name": "Pseudouridylate synthase PUS7L", "gene_name": "PUS7L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDTDYRIRFSSLCFFNDHVGFHGTIKSSPSDFIVIEIDEQGQLVNKTIDEPIFKISEIQLEPNNFPKKPKLDLQNLSLEDGRNQEVHTLIKYTDGDQNHQSGSEKEDTIVDGTSKCEEKADVLSSFLDEKTHELLNNFACDVREKWLSKTELIGLPPEFSIGRILDKNQRASLHSAIRQKFPFLVTVGKNSEIVVKPNLEYKELCHLVSEEEAFDFFKYLDAKKENSKFTFKPDTNKDHRKAVHHFVNKKFGNLVETKSFSKMNCSAGNPNVVVTVRFREKAHKRGKRPLSECQEGKVIYTAFTLRKENLEMFEAIGFLAIKLGVIPSDFSYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVDDSLRLGQLKGNHFDIVIRNLKKQINDSANLRERIMEAIENVKKKGFVNYYGPQRFGKGRKVHTDQIGLALLKNEMMKAIKLFLTPEDLDDPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEEGCIQAWFSLPHSMRIFYVHAYTSKIWNEAVSYRLETYGARVVQGDLVCLDEDIDDENFPNSKIHLVTEEEGSANMYAIHQVVLPVLGYNIQYPKNKVGQWYHDILSRDGLQTCRFKVPTLKLNIPGCYRQILKHPCNLSYQLMEDHDIDVKTKGSHIDETALSLLISFDLDASCYATVCLKEIMKHDV", "length": 701 }, "evidence": [ { "id": "F1SGY7", "url": "https://omabrowser.org/oma/group/F1SGY7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SGY7", "url": "https://www.uniprot.org/uniprotkb/F1SGY7" } ], "pmid": "" }, { "name": "pseudouridine synthase activity", "id": "GO:0009982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009982", "evidence": [ { "database": "UniProtKB", "id": "F1SGY7", "url": "https://www.uniprot.org/uniprotkb/F1SGY7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SGY7", "url": "https://www.uniprot.org/uniprotkb/F1SGY7" } ], "pmid": "" }, { "name": "pseudouridine synthesis", "id": "GO:0001522", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001522", "evidence": [ { "database": "UniProtKB", "id": "F1SGY7", "url": "https://www.uniprot.org/uniprotkb/F1SGY7" } ], "pmid": "" }, { "name": "mRNA pseudouridine synthesis", "id": "GO:1990481", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990481", "evidence": [ { "database": "UniProtKB", "id": "F1SGY7", "url": "https://www.uniprot.org/uniprotkb/F1SGY7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGY7", "url": "https://www.uniprot.org/uniprotkb/F1SGY7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 651, "end_pos": 653, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "56644", "name": "", "equation": "a uridine in mRNA = a pseudouridine in mRNA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "56644", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/56644" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGY7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 702, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGY7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGY7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGY7" }, { "id": "PS50984", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50984" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRUD", "eco_id": "ECO_0000259", "start_pos": 425, "end_pos": 648, "start_aa": "Gly", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 405, "end_pos": 407 }, { "start_pos": 651, "end_pos": 653 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM16-1", "uniprot_ac": "F1SM16", "uniprot_id": "F1SM16_PIG", "mass": { "chemical_mass": 79667.0, "monoisotopic_mass": 79667.0 }, "refseq": { "ac": "XP_001925760", "name": "Holliday junction recognition protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925760" }, "gene_names": [ { "name": "HJURP", "type": "recommended", "evidence": [ { "id": "F1SM16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ] }, { "name": "HJURP", "type": "synonym", "evidence": [ { "id": "XP_001925760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925760" } ] } ], "protein_names": [ { "name": "Holliday junction recognition protein", "type": "synonym", "evidence": [ { "id": "XP_001925760", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925760" }, { "id": "F1SM16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM16/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HJURP", "url": "https://www.uniprot.org/uniprotkb/F1SM16", "locus": { "chromosome": "15", "start_pos": 134106578, "end_pos": 134123140, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016313", "url": "https://www.ensembl.org/id/ENSSSCG00000016313" } ] } } ], "crossref": [ { "id": "F1SM16", "url": "https://alphafold.ebi.ac.uk/entry/F1SM16", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016313", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016313", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154630", "url": "https://www.ncbi.nlm.nih.gov/gene/100154630", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154630", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154630", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SFIAHSW", "url": "https://omabrowser.org/oma/group/SFIAHSW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SM16", "url": "https://www.orthodb.org/?gene=F1SM16", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15992", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15992", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15992:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15992:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10384", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10384", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12346", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12346", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12347", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12347", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-606279", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925760", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FB81", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FB81-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM16-1", "url": "https://www.uniprot.org/uniprotkb/F1SM16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGEVCGEDELLQKLRDSRRRFQRRMQQLIEKYDQPFEDGPVVQMSTLTYETPQGFRIWGGGLVKERNPGQIQGFPAKADGGDNGHLQVTTRGPELSSPCTRVEDSKSSDVATTFYEEDIIAGSIMPAVPRSPLKDELRRKYLTQVDVLLREEGCLEGAGSGEGRDTCVTPVASLASPTRSAHGNCGVSEESLDGPVQPPSSPREGSALRPRPASVALVPRSDSISFPGTSGGSFSSSRCSEAEDICNATLSDLYAGMLHSMSRLLGARPCCIISTKTFIGQNWSSRRRHRCKSRMNRTSCRGGGRSRRSPRESRPPASEPRKHTAVLRDCENLLDVSGHKTGLEEGPSFLGVSKPHPPAFAPSWKGLQRTPPKLSSLTYLDSNAVYHLDQENRFMTLRWLISPVKITSRPRILQGQGRNRYREIELKFDKLHQEYCSSPQKQPGLTKLPSSSAVDVYRGRPAPPGGPWGLEACRLSSPLLRAKAKRLSEAFENLGQRSIKAGSCPPKSSAFPPLSKTDPTHSPGRSEHTADLVCRGQDLGRLRSVSPSKAISVPRVQPPGRAKDRYDDIKEKFDKLHQKYCPKSPQRTQVPSSPGAAPGEASVGVQYQKEFLGKFDPDSGSHGLPKPSPSPQWNIKSPLGSIAIEAPPSAGFALATRGRHEVPTKRRRLSEPLEGRRWSIPWDFSPVDRTTLRPGEEVGASQSDWEKKQRKEQHIFQDGREK", "length": 723, "header": "tr|F1SM16-1|F1SM16_PIG Isoform 1 of Holliday junction recognition protein OS=Sus scrofa OX=9823 GN=HJURP PE=4 SV=2 CANONICAL=F1SM16-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FB81-1", "url": "https://www.uniprot.org/uniprotkb/F1SM16/entry#A0A8W4FB81-1", "sequence": { "sequence": "MEGEVCGEDELLQKLRDSRRRFQRRMQQLIEKYDQPFEDGPVVQMSTLTYETPQGFRIWGGGLVKERNPGQIQGFPAKADGGDNGHLQVTTRGPELSSPCTRVEDSKSSDVATTFYEEDIIAGSIMPAVPRSPLKDELRRKYLTQVDVLLREEGCLEGAGSGEGRDTCVTPVASLASPTRSAHGNCGVSEESLDGPVQPPSSPREGSALRPRPASVALVPRSDSISFPGTSGGSFSSSRCSEAEDICNATLSDLYAGMLHSMSRLLGARPCCIISTKTFIGQNWSSRRRHRCKSRMNRTSCRGGGRSRRSPRESRPPASEPRKHTAVLRDCENLLDVSGHKTGLEEGPSFLGVSKPHPPAFAPSWKGLQRTPPKLSSLTYLDSNAVYHLDQENRFMTLRWLISPVKITSRPRILQGQGRNRYREIELKFDKLHQEYCSSPQKQPGLTKLPSSSAVDVYRGRPAPPGGPWGLEACRLSSPLLRAKAKRLSEAFENLGQRSIKAGSCPPKSSAFPPLSKTDPTHSPGRSEHTADLVCRGQDLGRLRSVSPSKAISVPRVQPPGRAKDRYDDIKEKFDKLHQKYCPKSPQRTQVPSSPGAAPGEASVGVQYQKEFLGKFDPDSGSHGLPKPSPSPQWNIKSPLGSIAIEAPPSAGFALATRGRHEVPTKRRRLSEPLEGRRWSIPWDFSPVDRTTLRPGEEVGASQSDWEKKQVRFCLLDMGVL", "length": 721, "header": "tr|A0A8W4FB81-1|F1SM16_PIG Computationally mapped isoform of Holliday junction recognition protein OS=Sus scrofa OX=9823 GN=HJURP PE=4 SV=1 CANONICAL=F1SM16-1" }, "locus": { "chromosome": "15", "start_pos": 134123099, "end_pos": 134108277, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093222.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093222.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076579.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076579.1" } ] } }, { "isoform_ac": "F1SM16-1", "url": "https://www.uniprot.org/uniprotkb/F1SM16/entry#F1SM16-1", "sequence": { "sequence": "MEGEVCGEDELLQKLRDSRRRFQRRMQQLIEKYDQPFEDGPVVQMSTLTYETPQGFRIWGGGLVKERNPGQIQGFPAKADGGDNGHLQVTTRGPELSSPCTRVEDSKSSDVATTFYEEDIIAGSIMPAVPRSPLKDELRRKYLTQVDVLLREEGCLEGAGSGEGRDTCVTPVASLASPTRSAHGNCGVSEESLDGPVQPPSSPREGSALRPRPASVALVPRSDSISFPGTSGGSFSSSRCSEAEDICNATLSDLYAGMLHSMSRLLGARPCCIISTKTFIGQNWSSRRRHRCKSRMNRTSCRGGGRSRRSPRESRPPASEPRKHTAVLRDCENLLDVSGHKTGLEEGPSFLGVSKPHPPAFAPSWKGLQRTPPKLSSLTYLDSNAVYHLDQENRFMTLRWLISPVKITSRPRILQGQGRNRYREIELKFDKLHQEYCSSPQKQPGLTKLPSSSAVDVYRGRPAPPGGPWGLEACRLSSPLLRAKAKRLSEAFENLGQRSIKAGSCPPKSSAFPPLSKTDPTHSPGRSEHTADLVCRGQDLGRLRSVSPSKAISVPRVQPPGRAKDRYDDIKEKFDKLHQKYCPKSPQRTQVPSSPGAAPGEASVGVQYQKEFLGKFDPDSGSHGLPKPSPSPQWNIKSPLGSIAIEAPPSAGFALATRGRHEVPTKRRRLSEPLEGRRWSIPWDFSPVDRTTLRPGEEVGASQSDWEKKQRKEQHIFQDGREK", "length": 723, "header": "tr|F1SM16-1|F1SM16_PIG Isoform 1 of Holliday junction recognition protein OS=Sus scrofa OX=9823 GN=HJURP PE=4 SV=2 CANONICAL=F1SM16-1" }, "locus": { "chromosome": "15", "start_pos": 134123099, "end_pos": 134106811, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017766.6", "url": "https://www.ensembl.org/id/ENSSSCT00000017766.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017285.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017285.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FB81", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FB81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154630", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154630", "resource": "KEGG Pathway" }, { "id": "R-SSC-606279", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "resource": "Reactome", "description": "Deposition of new CENPA-containing nucleosomes at the centromere" }, { "id": "R-SSC-69273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69273", "resource": "Reactome", "description": "Cyclin A/B1/B2 associated events during G2/M transition" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A1W1-1", "protein_name": "Holliday junction recognition protein", "gene_name": "Hjurp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESMNLRDRPLDQRLKESSRRFQTYMQRLIAKYNQPFEDDPLVQMATLTYETPQGLRVWGGKLIKEEDEEHTQDPSVEVIGGLSEQAPGGDSDSSGADTSLEEAEWPSCNLTREASGDTGKHQLTVPGNTLKTDLRRKYLTQVDILLQDAEYFKNTQKGDGKDTVTTCFPSWTSPVTPAPGCQDGIPAKSFGGPEGSASSCGDQASSYPCPADMTIVTRNDSFSLLGASSNSVSNQCPEVDDISNVTISDLYEGMMHSMSRLLRSKPSCIISTKTSINRNWKLKRRLSRKHGVHKNTTYCHRSKPFQRSSRKGPLHCSEPRKEARVLRDSKNLPHVDPHKTDKTGLELESVPLEGSKLQVHKLSPAWKELQGLPQKYLGLSTVNHLGREDRVKALQWLISPVKMAPRLRVPPGQVENWYREVKIKFEKLHQECCPSPEKRLRLTGPTQSWAADMYRGGSKSPGSRQSVETHKLSSPLSREKTERPGEAFEDLRGRSVKTNSCLLRRGPSPEDSPSQSPGHSQQRSGHLQEHNSEPIRKAAWPSTAISAPDFPDCGGHYDELKKEFNRLYQKYCLVSPRHAKVTLCGRLSPVKAAAAVPGQTEHLKRLNPDSPLQSSQKWSPSPDWRIRIPQDSTAVEGHRSAQTASAVVRGPWLSTKRRKLSYPAKSPDSSGAAGRL", "length": 677 }, "evidence": [ { "id": "F1SM16", "url": "https://omabrowser.org/oma/group/F1SM16/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BB33-1", "protein_name": "Holliday junction recognition protein", "gene_name": "HJURP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGEVLSEDELLMKLRDSRCRFQRRMQQLIEKYNQPFEDGPVIQMSTLTYQTPQGLRIWGGGLVKRSTGHMQGSPMKMDGRTDGSVRVPAGDLELPPPDTPANDSKSSDADTTFFQGEVIAGNLMPAVPWSPSKNELRRKYLTQVDILLQDEGCLEFQCAGYGEGKDTHVTLAPSLASPARPAQGYCKDISEDRPGGPLQPPPSPREGDASHSCSAGQAMMPRGDGIPLHGTGGGSFSSSPCSKGEDVCNATLSDLYAGMLHSMSRLLGARPSCIISTKTLIGQNWSFRRRHRCKGRMNRTSCRGGGRSRQSPQERRPPCSEPLEDAGTLRDRGNLPDVSVPKTDLKSGRALLKVNKPQIHTFTPPWKELQGMPQKHSSLTYLDSKVLSPLDQENRFVTLKWLISPVKIASRPRILRGQAGSRFKEIEIKFDKLHQEYCLSPGKQLSLTYPPGSAVDVYRGGPMSPGSPQGLEAHRLSSPLCKSKAKRLSEASEGLGRRSIRVGSCLPESESFPSLSKTNPTCSAGRPEHTVDLVCLGSDSGKFQESVSFSKAISVPRVQPLGFARDRYDDIKEKFDKLHRQYCQKSPQQTQAPSDKARAGVRYQKEGFSVKFNPDSGCRGPPSLSSSPQQSVKSPLASNTVGAPPSMDVALAAGSGHQVPTKRCRLSDPQVCGEGARPWSFSPVGRAMPRPGEEVDS", "length": 698 }, "evidence": [ { "id": "F1SM16", "url": "https://omabrowser.org/oma/group/F1SM16/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3IET5-1", "protein_name": "Holliday junction recognition protein isoform X1", "gene_name": "Hjurp", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDPKDQPDNRLLRHLQESRNRFQTFMHRLIAKYNQPFEDDPLVQMSTLTYETPQGLRVWGGKLIKEKSKEQTQDSSMRMITRLNRQAPDSSEHLQPCIQVPGDDSESSGADTSADEEERLPGALMPTVPGSPLKNDLRWKYLTQVDILLQDEEYFKNAEKRNGKDTLMTFVSSSRVTPPPGCQDGISEKSFGSPQVSASSSRDWSTSNPCQADMTIMPRNDSFSFLGTSSSSLSSQPLEVDNICDVTVSDMYEGMMYSMSRLLSLKPSCIISTKTYINQNWNPRRRLSQKSRVHMNRTYSHRSKPFQRSSKKGPSSKPGKEVLRDCKNLLHTAPKTDLKLERGSLEGSKLQVYKFNPAWKELQVMPQKYLDLNTANYHEQENRVKTLQWLISPVKIVPRPGMLPSQAEKWYKEIEMKFDKLHQECSLSSEKQLPLAGPTESWAVDVYRGTSRSPGSPQGIKTHRLSSPFNRGKKRSSEAFEDISEMSVKADSCLPSGHPTLLPLGGNTSAGLFLQRHNFGPIRKAVSPSTANSVPWTSPWGHGRNRYDEIKEEFDKLYQKYCLMSPPQQVKMTSCVTVSSKKAGAAVPSQTEDLRKLNPDSGFQSSPKLSASGWNIRKPQDSIPVEAQMSARTAGAVMRDPRFPTKRRKLSYPPTCAH", "length": 658 }, "evidence": [ { "id": "F1SM16", "url": "https://omabrowser.org/oma/group/F1SM16/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6PG16-1", "protein_name": "Holliday junction recognition protein", "gene_name": "Hjurp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESMGRQDRRLHQQLKESSSRFQTLMKRLIAKYNQPFEDDPLVEMRTLTYETPQGLRVWGGKLMKKEDKEYTQVIDRLNGQAPEGDSESSGADTSLEENWPSCSSAMREASGDPRQRQPAVPGNTLETDLRRKYLTQVDILPQDEEYFKNAEKRGGKDTVMTWVPSVTSSVTPASGCQDAISAKSSGGPEVSALSSRGQGPSYPCPADMAIVARSDGLSLLGTSSNSVSSQSFEVDDLCNVTISDLYEGMMHSMSRLLRSKPSCIISTKTYINQSWKLRRRPSRKQGLHKNRTHCPRSKPSQRSARKGPASCSEPGKEAGILRDYGNLLHVAPHKTGLELKSVSLEGSKRQVHKSSPAWKELQMMPQKDLDLNRERENRVMTLQWLISPVKVVPRPRMLPSQVEKWYREIKIKFDKLHQEYCLSSGKQPRLTDPTESWAVDVYRSGSKSPGSRQDVETCRPSSPFGREKTERPGEALEDLRGNGKSVKTKSCLLRSCPSPEGSPSRSPSHSQLSSGLQEHNSEPTGKAVWPSTAISAPSIGSPGCGKDNYYELKKEFNRLYQKYCLSPQRAKVTSCGRVSPMKAAAALPCQSEHLKRLNPDSPQQSSQKRSISPGCHRRVLQDSTAQTASTLVRDSWLPTKRCKLSYPVACAHQAKFHDTSGASGWP", "length": 667 }, "evidence": [ { "id": "F1SM16", "url": "https://omabrowser.org/oma/group/F1SM16/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NCD3-1", "protein_name": "Holliday junction recognition protein", "gene_name": "HJURP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLGTLRAMEGEDVEDDQLLQKLRASRRRFQRRMQRLIEKYNQPFEDTPVVQMATLTYETPQGLRIWGGRLIKERNEGEIQDSSMKPADRTDGSVQAAAWGPELPSHRTVLGADSKSGEVDATSDQEESVAWALAPAVPQSPLKNELRRKYLTQVDILLQGAEYFECAGNRAGRDVRVTPLPSLASPAVPAPGYCSRISRKSPGDPAKPASSPREWDPLHPSSTDMALVPRNDSLSLQETSSSSFLSSQPFEDDDICNVTISDLYAGMLHSMSRLLSTKPSSIISTKTFIMQNWNSRRRHRYKSRMNKTYCKGARRSQRSSKENFIPCSEPVKGTGALRDCKNVLDVSCRKTGLKLEKAFLEVNRPQIHKLDPSWKERKVTPSKYSSLIYFDSSATYNLDEENRFRTLKWLISPVKIVSRPTIRQGHGENRQREIEIRFDQLHREYCLSPRNQPRRMCLPDSWAMNMYRGGPASPGGLQGLETRRLSLPSSKAKAKSLSEAFENLGKRSLEAGRCLPKSDSSSSLPKTNPTHSATRPQQTSDLHVQGNSSGIFRKSVSPSKTLSVPDKEVPGHGRNRYDEIKEEFDKLHQKYCLKSPGQMTVPLCIGVSTDKASMEVRYQTEGFLGKLNPDPHFQGFQKLPSSPLGCRKSLLGSTAIEAPSSTCVARAITRDGTRDHQFPAKRPRLSEPQGSGRQGNSLGASDGVDNTVRPGDQGSSSQPNSEERGENTSYRMEEKSDFMLEKLETKSV", "length": 748 }, "evidence": [ { "id": "F1SM16", "url": "https://omabrowser.org/oma/group/F1SM16/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" }, { "name": "chromosome, centromeric region", "id": "GO:0000775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000775", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "chromosome segregation", "id": "GO:0007059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007059", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" }, { "name": "regulation of protein-containing complex assembly", "id": "GO:0043254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043254", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" }, { "name": "CENP-A containing chromatin assembly", "id": "GO:0034080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034080", "evidence": [ { "database": "UniProtKB", "id": "F1SM16", "url": "https://www.uniprot.org/uniprotkb/F1SM16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SM16-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 723, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SM16-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SM16" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SM16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM16" }, { "id": "PF12346", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12346" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Holliday junction recognition protein HJURP central", "eco_id": "ECO_0000259", "start_pos": 262, "end_pos": 376, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SM16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM16" }, { "id": "PF12347", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12347" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Holliday junction regulator protein family C-terminal", "eco_id": "ECO_0000259", "start_pos": 400, "end_pos": 460, "start_aa": "Trp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 248, "end_pos": 250 }, { "start_pos": 283, "end_pos": 285 }, { "start_pos": 297, "end_pos": 299 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI05-1", "uniprot_ac": "F1SI05", "uniprot_id": "F1SI05_PIG", "mass": { "chemical_mass": 44964.0, "monoisotopic_mass": 44964.0 }, "refseq": {}, "gene_names": [ { "name": "MTERF4", "type": "recommended", "evidence": [ { "id": "F1SI05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ] }, { "name": "PASK", "type": "recommended", "evidence": [ { "id": "F1SI05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ] }, { "name": "MTERF4", "type": "synonym", "evidence": [ { "id": "F1SI05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ] } ], "protein_names": [ { "name": "Transcription termination factor 4, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SI05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI05/entry#names_and_taxonomy" } ] }, { "name": "Mitochondrial transcription termination factor 4", "type": "synonym", "evidence": [ { "id": "F1SI05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI05/entry#names_and_taxonomy" } ] }, { "name": "mTERF domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "F1SI05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI05/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI05", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PASK", "url": "https://www.uniprot.org/uniprotkb/F1SI05", "locus": { "chromosome": "15", "start_pos": 139890178, "end_pos": 139917069, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016378", "url": "https://www.ensembl.org/id/ENSSSCG00000016378" } ] } } ], "crossref": [ { "id": "F1SI05", "url": "https://alphafold.ebi.ac.uk/entry/F1SI05", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016378", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016378", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512374", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512374", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CWRSCQF", "url": "https://omabrowser.org/oma/group/CWRSCQF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SI05", "url": "https://www.orthodb.org/?gene=F1SI05", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13068:SF203", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13068:SF203", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FDM6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDM6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDM6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI05", "url": "https://www.uniprot.org/uniprotkb/F1SI05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI05-1", "url": "https://www.uniprot.org/uniprotkb/F1SI05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAALGRQVFQWHRLTPVTGTVVAGHTPQLGEQKRMVAFLLRKLTTVSDGGGLEEPSFVEPGKRVQEPEHRTGLTRCLLEKQRTAVEPETVVRSLRDLGFSDVHAHELLRLQPGTRPQQLLDIISELMLLGLNPEPVCVALKRSPQLLDLPVMQMKKRSSYLRKLGLGEGRLKRVLQCCPEIFTMRQRDLESIVGVLRERCLFTVKQVTEVLHRCPHVLREDPAELEYKFQYAYFRMGLRPADVVRTDFLQYPMAKIKQRHVFLERLGRYQTPDKKGQTQVPNPLLKGILRVSEAEFLARTACASAEEFEVFKKLLAREEEETEERGAADDSRAGEEGEEDEAGEEGGRRGSGSRDGRTGGQEPRETEAEFHFLTAFGNCILDLLGLFFILELVFEE", "length": 396, "header": "tr|F1SI05-1|F1SI05_PIG Isoform 1 of Transcription termination factor 4, mitochondrial OS=Sus scrofa OX=9823 GN=PASK PE=3 SV=4 CANONICAL=F1SI05-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FDM6-1", "url": "https://www.uniprot.org/uniprotkb/F1SI05/entry#A0A8W4FDM6-1", "sequence": { "sequence": "VFQWHRLTPVTGTVVAGHTPQLGEQKRMVAFLLRKLTTVSDGGGLEEPSFVEPGKRVQEPEHRTGLTRCLLEKQRTAVEPETVVRSLRDLGFSDVHAHELLRLQPGTRPQQLLDIISELMLLGLNPEPVCVALKRSPQLLDLPVMQMKKRSSYLRKLGLGEGRLKRVLQCCPEIFTMRQRDLESIVGVLRERCLFTVKQVTEVLHRCPHVLREDPAELEYKFQVSTTAGASSWE", "length": 234, "header": "tr|A0A8W4FDM6-1|F1SI05_PIG Computationally mapped isoform of Transcription termination factor 4, mitochondrial OS=Sus scrofa OX=9823 GN=PASK PE=3 SV=1 CANONICAL=F1SI05-1" }, "locus": { "chromosome": "15", "start_pos": 139885866, "end_pos": 139883407, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101870.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101870.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076410.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076410.1" } ] } }, { "isoform_ac": "F1SI05-1", "url": "https://www.uniprot.org/uniprotkb/F1SI05/entry#F1SI05-1", "sequence": { "sequence": "MAALGRQVFQWHRLTPVTGTVVAGHTPQLGEQKRMVAFLLRKLTTVSDGGGLEEPSFVEPGKRVQEPEHRTGLTRCLLEKQRTAVEPETVVRSLRDLGFSDVHAHELLRLQPGTRPQQLLDIISELMLLGLNPEPVCVALKRSPQLLDLPVMQMKKRSSYLRKLGLGEGRLKRVLQCCPEIFTMRQRDLESIVGVLRERCLFTVKQVTEVLHRCPHVLREDPAELEYKFQYAYFRMGLRPADVVRTDFLQYPMAKIKQRHVFLERLGRYQTPDKKGQTQVPNPLLKGILRVSEAEFLARTACASAEEFEVFKKLLAREEEETEERGAADDSRAGEEGEEDEAGEEGGRRGSGSRDGRTGGQEPRETEAEFHFLTAFGNCILDLLGLFFILELVFEE", "length": 396, "header": "tr|F1SI05-1|F1SI05_PIG Isoform 1 of Transcription termination factor 4, mitochondrial OS=Sus scrofa OX=9823 GN=PASK PE=3 SV=4 CANONICAL=F1SI05-1" }, "locus": { "chromosome": "15", "start_pos": 139887021, "end_pos": 139881801, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017835.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017835.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017354.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017354.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FDM6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDM6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512374", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512374", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F1SI05", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ], "pmid": "" }, { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "F1SI05", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ], "pmid": "" }, { "name": "protein-RNA adaptor activity", "id": "GO:0140517", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140517", "evidence": [ { "database": "UniProtKB", "id": "F1SI05", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ], "pmid": "" }, { "name": "RNA folding chaperone", "id": "GO:0140691", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140691", "evidence": [ { "database": "UniProtKB", "id": "F1SI05", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SI05", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F1SI05", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ], "pmid": "" }, { "name": "mitochondrial large ribosomal subunit assembly", "id": "GO:1902775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902775", "evidence": [ { "database": "UniProtKB", "id": "F1SI05", "url": "https://www.uniprot.org/uniprotkb/F1SI05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SI05-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 396, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SI05-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SI05" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLT0-1", "uniprot_ac": "F1SLT0", "uniprot_id": "F1SLT0_PIG", "mass": { "chemical_mass": 30310.0, "monoisotopic_mass": 30310.0 }, "refseq": { "ac": "XP_005652669", "name": "PILR alpha-associated neural protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652669" }, "gene_names": [ { "name": "PIANP", "type": "recommended", "evidence": [ { "id": "F1SLT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLT0" } ] }, { "name": "PIANP", "type": "synonym", "evidence": [ { "id": "XP_005652669", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652669" } ] } ], "protein_names": [ { "name": "PILR alpha associated neural protein", "type": "synonym", "evidence": [ { "id": "F1SLT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLT0/entry#names_and_taxonomy" } ] }, { "name": "PILR alpha-associated neural protein", "type": "synonym", "evidence": [ { "id": "XP_005652669", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652669" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLT0", "url": "https://www.uniprot.org/uniprotkb/F1SLT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PIANP", "url": "https://www.uniprot.org/uniprotkb/F1SLT0", "locus": { "chromosome": "5", "start_pos": 63999438, "end_pos": 63992685, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000692", "url": "https://www.ensembl.org/id/ENSSSCG00000000692" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000692", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000692", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519150", "url": "https://www.ncbi.nlm.nih.gov/gene/100519150", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039628", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039628", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519150", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519150", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MEPSACR", "url": "https://omabrowser.org/oma/group/MEPSACR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLT0", "url": "https://www.orthodb.org/?gene=F1SLT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32023:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32023:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15298", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15298", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005652669", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005652669", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FIP9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLT0", "url": "https://www.uniprot.org/uniprotkb/F1SLT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SLT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESRMWPALLLSHLLPLWPLLLLPLPPPAQGSSFSPQTPPAPARPPCARGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSANPGFLPLDYGFAAPHGLATPHPNSDSMRGDGDGLILGEAPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPQPKGAPAFQLNRIPLVNL", "length": 284, "header": "tr|F1SLT0-1|F1SLT0_PIG Isoform 1 of PILR alpha associated neural protein OS=Sus scrofa OX=9823 GN=PIANP PE=4 SV=1 CANONICAL=F1SLT0-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FIP9-1", "url": "https://www.uniprot.org/uniprotkb/F1SLT0/entry#A0A8W4FIP9-1", "sequence": { "sequence": "MESRMWPALLLSHLLPLWPLLLLPLPPPAQGSSFSPQTPPAPARPPCARGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSANPGFLPLDYGFAAPHGLATPHPNSDSMRGDGDGLILGEAPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPQPKGAPAFQLNR", "length": 278, "header": "tr|A0A8W4FIP9-1|F1SLT0_PIG Computationally mapped isoform of PILR alpha associated neural protein OS=Sus scrofa OX=9823 GN=PIANP PE=4 SV=1 CANONICAL=F1SLT0-1" }, "locus": { "chromosome": "5", "start_pos": 63997916, "end_pos": 63995006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098203.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098203.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079206.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079206.1" } ] } }, { "isoform_ac": "F1SLT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SLT0/entry#F1SLT0-1", "sequence": { "sequence": "MESRMWPALLLSHLLPLWPLLLLPLPPPAQGSSFSPQTPPAPARPPCARGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSANPGFLPLDYGFAAPHGLATPHPNSDSMRGDGDGLILGEAPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPQPKGAPAFQLNRIPLVNL", "length": 284, "header": "tr|F1SLT0-1|F1SLT0_PIG Isoform 1 of PILR alpha associated neural protein OS=Sus scrofa OX=9823 GN=PIANP PE=4 SV=1 CANONICAL=F1SLT0-1" }, "locus": { "chromosome": "5", "start_pos": 63998228, "end_pos": 63995006, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000754.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000754.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000738.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000738.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 111, "start_aa": "Thr", "end_pos": 111, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr111", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 249, "start_aa": "Thr", "end_pos": 249, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr249", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 251, "start_aa": "Thr", "end_pos": 251, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr251", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 89, "start_aa": "Thr", "end_pos": 89, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr89", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FIP9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIP9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519150", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519150", "resource": "KEGG Pathway" }, { "id": "R-SSC-198933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "resource": "Reactome", "description": "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5U2P6-1", "protein_name": "PILR alpha-associated neural protein", "gene_name": "Pianp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWPAQLLSQLLPLWPLLLLPLSLPAQGSSHRSPPAPARPPCVRGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSVNPGFLPLDYGFAAPHGLATPHPNSDSMRDDGDGLILGETPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPQPKGAPAFQLNR", "length": 272 }, "evidence": [ { "id": "F1SLT0", "url": "https://omabrowser.org/oma/group/F1SLT0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P1B3-1", "protein_name": "PILR alpha-associated neural protein", "gene_name": "Pianp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWSAQLLSQLLPLWPLLLLSVLPPAQGSSHRSPPAPARPPCVRGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVVPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSVNPGFLPLDYGFAAPHGLATPHPNSDSMRDDGDGLILGETPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPQPKGAPAFQLNRIPLVNL", "length": 278 }, "evidence": [ { "id": "F1SLT0", "url": "https://omabrowser.org/oma/group/F1SLT0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IYJ0-1", "protein_name": "PILR alpha-associated neural protein", "gene_name": "PIANP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESRMWPALLLSHLLPLWPLLLLPLPPPAQGSSSSPRTPPAPARPPCARGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSANPGFLDYGFAAPHGLATPHPNSDSMRGDGDGLILGEAPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPHPKGAPAFQLNRIPLVNL", "length": 282 }, "evidence": [ { "id": "F1SLT0", "url": "https://omabrowser.org/oma/group/F1SLT0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SLT0", "url": "https://www.uniprot.org/uniprotkb/F1SLT0" } ], "pmid": "" }, { "name": "presynapse", "id": "GO:0098793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098793", "evidence": [ { "database": "UniProtKB", "id": "F1SLT0", "url": "https://www.uniprot.org/uniprotkb/F1SLT0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of immune response", "id": "GO:0050776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050776", "evidence": [ { "database": "UniProtKB", "id": "F1SLT0", "url": "https://www.uniprot.org/uniprotkb/F1SLT0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "F1SLT0", "url": "https://www.uniprot.org/uniprotkb/F1SLT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLT0" }, { "id": "PF15298", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15298" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AJAP1/PANP C-terminal", "eco_id": "ECO_0000259", "start_pos": 182, "end_pos": 238, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 89, 111, 249, 251 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SF91-1", "uniprot_ac": "F1SF91", "uniprot_id": "F1SF91_PIG", "mass": { "chemical_mass": 42517.0, "monoisotopic_mass": 42517.0 }, "refseq": { "ac": "XP_020952583", "name": "N-acetylaspartylglutamate synthase A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952583" }, "gene_names": [ { "name": "RIMKLA", "type": "recommended", "evidence": [ { "id": "F1SF91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF91" } ] }, { "name": "RIMKLA", "type": "synonym", "evidence": [ { "id": "XP_020952583", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952583" } ] } ], "protein_names": [ { "name": "N-acetylaspartylglutamate synthase", "type": "recommended", "evidence": [ { "id": "F1SF91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF91/entry#names_and_taxonomy" } ] }, { "name": "6.3.2.41", "type": "synonym", "evidence": [ { "id": "F1SF91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF91/entry#names_and_taxonomy" } ] }, { "name": "N-acetylaspartylglutamate synthase A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020952583", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952583" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF91", "url": "https://www.uniprot.org/uniprotkb/F1SF91" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RIMKLA", "url": "https://www.uniprot.org/uniprotkb/F1SF91", "locus": { "chromosome": "6", "start_pos": 168916725, "end_pos": 168950046, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000055268", "url": "https://www.ensembl.org/id/ENSSSCG00000055268" } ] } } ], "crossref": [ { "id": "F1SF91", "url": "https://alphafold.ebi.ac.uk/entry/F1SF91", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003968", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003968", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522878", "url": "https://www.ncbi.nlm.nih.gov/gene/100522878", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013815", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013815", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522878", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522878", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EKHGVMV", "url": "https://omabrowser.org/oma/group/EKHGVMV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SF91", "url": "https://www.orthodb.org/?gene=F1SF91", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21621", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21621", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21621:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21621:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8964539", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964539", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020952583", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952583", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "40035", "url": "https://www.rhea-db.org/rhea/40035", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SF91", "url": "https://www.uniprot.org/uniprotkb/F1SF91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF91-1", "url": "https://www.uniprot.org/uniprotkb/F1SF91-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSQLWFLTDRRIREDYPQVQILRALRQRCSEQDVRFRAVLMDQIAVTIVGGNLGLQLNQKALTTFPDVVLVRVPTPSVQSDSDITVLRHLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDVCHLVRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCSLGGVGVMCPLTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFVVCEANANVGFLAFDQACNLDVGSIIADYTMTLLPSRPTGHMAVLPGLSGPREQKEPDGCGSAQGIGAESGYAVNSGSTSSESEPELGESRASAAGSAGAPAPVLPEPGYNMNTRIAAELKLK", "length": 392, "header": "tr|F1SF91-1|F1SF91_PIG Isoform 1 of N-acetylaspartylglutamate synthase OS=Sus scrofa OX=9823 GN=RIMKLA PE=3 SV=2 CANONICAL=F1SF91-1" }, "isoforms": [ { "isoform_ac": "F1SF91-1", "url": "https://www.uniprot.org/uniprotkb/F1SF91/entry#F1SF91-1", "sequence": { "sequence": "MCSQLWFLTDRRIREDYPQVQILRALRQRCSEQDVRFRAVLMDQIAVTIVGGNLGLQLNQKALTTFPDVVLVRVPTPSVQSDSDITVLRHLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDVCHLVRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCSLGGVGVMCPLTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFVVCEANANVGFLAFDQACNLDVGSIIADYTMTLLPSRPTGHMAVLPGLSGPREQKEPDGCGSAQGIGAESGYAVNSGSTSSESEPELGESRASAAGSAGAPAPVLPEPGYNMNTRIAAELKLK", "length": 392, "header": "tr|F1SF91-1|F1SF91_PIG Isoform 1 of N-acetylaspartylglutamate synthase OS=Sus scrofa OX=9823 GN=RIMKLA PE=3 SV=2 CANONICAL=F1SF91-1" }, "locus": { "chromosome": "6", "start_pos": 168949850, "end_pos": 168919765, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104953.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104953.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075484.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075484.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SF91", "url": "https://www.uniprot.org/uniprotkb/F1SF91" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522878", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522878", "resource": "KEGG Pathway" }, { "id": "R-SSC-8964539", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964539", "resource": "Reactome", "description": "Glutamate and glutamine metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A7C3-1", "protein_name": "N-acetylaspartylglutamate synthase", "gene_name": "Rimkla", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCAQVWLLTDRLIREDYPQVQILRALRQRCSEQDVGFRAVFLDQIAVTVVGGHLGLQLSQKPLTTFPDVVVVRVSTPSVQSDSEITILRHLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDICHLVRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCFLGGVGVKCSLTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFMVCEANANVGFLAFDQACNLDVGAIIADYAMSLLPNRQTGKMAILPGLASPREKSEPNGCVSAQGVAESVYTITNGSTSSESEPELGEARDSSAKTMGAPPAHVTRAWLQH", "length": 380 }, "evidence": [ { "id": "F1SF91", "url": "https://omabrowser.org/oma/group/F1SF91/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N0M1-1", "protein_name": "N-acetylaspartylglutamate synthase", "gene_name": "RIMKLA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MCSQLWFLTDRRIREDYPQVQILRALRQRCSEQDVRFRAVLMDQIAVTIVGGNLGLQLNQKALTTFPDVVLVRVPTPSVQSDSDITVLRHLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKGVFLARDKHHLSDICHLIRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCSLGGVGVMCPLTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFVVCEANANVGFLAFDQACNLDVGGIIADYTMSLLPNRQTGKMAVLPGLASPREKKEPDGCASAQGVAESVYAINSGSTSSESEPELGEIRASSASTAGAPAPMLPDPSYNINTRIASELKLK", "length": 391 }, "evidence": [ { "id": "F1SF91", "url": "https://omabrowser.org/oma/group/F1SF91/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PFX8-1", "protein_name": "N-acetylaspartylglutamate synthase A", "gene_name": "Rimkla", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAQVWLLTDRLIREDYPQVQILRALRQRCSEQDVGFRAVFLDQIAVTVVGGHLGLQLSQKPLTTFPDVVVVRVSTPSVQSDSEITILRHLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDICHLVRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCFLGGVGVKCPLTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFTVCEANANVGFLAFDQACNLDVGAIIADYAMSLLPNRQTGKMAILPGLASPREKNEPNGCVSAQGVAESVYAITNGSTSSESEPELGEARDSSVKTMGAPPAHVAQAWLQH", "length": 380 }, "evidence": [ { "id": "F1SF91", "url": "https://omabrowser.org/oma/group/F1SF91/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IXN7-1", "protein_name": "N-acetylaspartylglutamate synthase A", "gene_name": "RIMKLA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MCSQLWFLTDRRIREDYPQVQILRALRQRCSEQDVRFRAVLMDQIAVTIVGGHLGLQLNQKALTTFPDVVLVRVPTPSVQSDSDITVLRHLEKLGCRLVNRPQSILNCINKFWTFQELAGHGVPMPDTFSYGGHEDFSKMIDEAEPLGYPVVVKSTRGHRGKAVFLARDKHHLSDICHLIRHDVPYLFQKYVKESHGKDIRVVVVGGQVIGSMLRCSTDGRMQSNCSLGGVGVKCPLTEQGKQLAIQVSNILGMDFCGIDLLIMDDGSFVVCEANANVGFLAFDQACNLDVGGIIADYTMSLLPNRQTGKMAVLPGLSSPREKNEPDGCASAQGVAESVYTINSGSTSSESEPELGEIRDSSASTMGAPPSMLPEPGYNINNRIASELKLK", "length": 391 }, "evidence": [ { "id": "F1SF91", "url": "https://omabrowser.org/oma/group/F1SF91/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SF91", "url": "https://www.uniprot.org/uniprotkb/F1SF91" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SF91", "url": "https://www.uniprot.org/uniprotkb/F1SF91" } ], "pmid": "" }, { "name": "N-acetyl-L-aspartate-L-glutamate ligase activity", "id": "GO:0072590", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072590", "evidence": [ { "database": "UniProtKB", "id": "F1SF91", "url": "https://www.uniprot.org/uniprotkb/F1SF91" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SF91", "url": "https://www.uniprot.org/uniprotkb/F1SF91" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "40035", "name": "", "equation": "N-acetyl-L-aspartate + L-glutamate + ATP = N-acetyl-L-aspartyl-L-glutamate + ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40035", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40035" } ] }, { "id": "R-SSC-8942575", "name": "N-acetylaspartylglutamate synthase A ligates NAA, L-Glu forming NAAG", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-5693772" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8942575", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8942575" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-5693772", "participant_name": "NAASP [cytosol]", "crossref": [ { "id": "16953", "database": "ChEBI", "url": "" }, { "id": "C01042", "database": "COMPOUND", "url": "" }, { "id": "ZINC000002446417", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SF91-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 392, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SF91-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SF91" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SF91", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF91" }, { "id": "PS50975", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50975" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ATP-grasp", "eco_id": "ECO_0000259", "start_pos": 115, "end_pos": 300, "start_aa": "Phe", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 225, "end_pos": 227 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SF93-1", "uniprot_ac": "F1SF93", "uniprot_id": "F1SF93_PIG", "mass": { "chemical_mass": 33966.0, "monoisotopic_mass": 33966.0 }, "refseq": { "ac": "XP_003128149", "name": "phosphopantothenate--cysteine ligase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128149" }, "gene_names": [ { "name": "PPCS", "type": "recommended", "evidence": [ { "id": "F1SF93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ] }, { "name": "PPCS", "type": "synonym", "evidence": [ { "id": "XP_003128149", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128149" } ] } ], "protein_names": [ { "name": "Phosphopantothenate--cysteine ligase", "type": "recommended", "evidence": [ { "id": "F1SF93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF93/entry#names_and_taxonomy" } ] }, { "name": "6.3.2.51", "type": "synonym", "evidence": [ { "id": "F1SF93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF93/entry#names_and_taxonomy" } ] }, { "name": "Phosphopantothenoylcysteine synthetase", "type": "synonym", "evidence": [ { "id": "F1SF93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF93/entry#names_and_taxonomy" } ] }, { "name": "phosphopantothenate--cysteine ligase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003128149", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128149" } ] } ], "function": [ { "annotation": "Catalyzes the second step in the biosynthesis of coenzyme A from vitamin B5, where cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. Has a preference for ATP over CTP as a cosubstrate.", "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93#function" }, { "database": "UniProtKB", "id": "ARBA00060296", "url": "https://www.uniprot.org/uniprotkb/ARBA00060296#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPCS", "url": "https://www.uniprot.org/uniprotkb/F1SF93", "locus": { "chromosome": "6", "start_pos": 168870869, "end_pos": 168876779, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000058636", "url": "https://www.ensembl.org/id/ENSSSCG00000058636" } ] } } ], "crossref": [ { "id": "F1SF93", "url": "https://alphafold.ebi.ac.uk/entry/F1SF93", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003966", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003966", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523850", "url": "https://www.ncbi.nlm.nih.gov/gene/100523850", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035929", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035929", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523850", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523850", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LERYQHH", "url": "https://omabrowser.org/oma/group/LERYQHH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SF93", "url": "https://www.orthodb.org/?gene=F1SF93", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12290", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12290", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04127", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04127", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-196783", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196783", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003128149", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128149", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19397", "url": "https://www.rhea-db.org/rhea/19397", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "25156", "url": "https://www.rhea-db.org/rhea/25156", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SF93-1", "url": "https://www.uniprot.org/uniprotkb/F1SF93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVDLVAEFPQPAGATRWAEVMARFAAGLGSQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPFAHRFPPQTWLSALRPSGRAPPGLLSLEAEEKSLPGFAAALRSYQEAEAAGTFLAVEFTTLADYLHLLQAAAQALNPLGSSAMFYLAAAVSDFYVPASEMPKHKIQSSGGPLQITMKMVPKMLSPLVKDWAPQAFIISFKLETDPAIVIDRARNALEIYRHQVVVANILDSRRSFVVIITKDSETELLLSEEEVEKGIEIEEKLVDDLQSRHTAFIRDKN", "length": 311, "header": "tr|F1SF93-1|F1SF93_PIG Isoform 1 of Phosphopantothenate--cysteine ligase OS=Sus scrofa OX=9823 GN=PPCS PE=1 SV=1 CANONICAL=F1SF93-1" }, "isoforms": [ { "isoform_ac": "F1SF93-1", "url": "https://www.uniprot.org/uniprotkb/F1SF93/entry#F1SF93-1", "sequence": { "sequence": "MAAVDLVAEFPQPAGATRWAEVMARFAAGLGSQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPFAHRFPPQTWLSALRPSGRAPPGLLSLEAEEKSLPGFAAALRSYQEAEAAGTFLAVEFTTLADYLHLLQAAAQALNPLGSSAMFYLAAAVSDFYVPASEMPKHKIQSSGGPLQITMKMVPKMLSPLVKDWAPQAFIISFKLETDPAIVIDRARNALEIYRHQVVVANILDSRRSFVVIITKDSETELLLSEEEVEKGIEIEEKLVDDLQSRHTAFIRDKN", "length": 311, "header": "tr|F1SF93-1|F1SF93_PIG Isoform 1 of Phosphopantothenate--cysteine ligase OS=Sus scrofa OX=9823 GN=PPCS PE=1 SV=1 CANONICAL=F1SF93-1" }, "locus": { "chromosome": "6", "start_pos": 168876737, "end_pos": 168873252, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106532.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106532.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078725.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078725.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523850", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523850", "resource": "KEGG Pathway" }, { "id": "R-SSC-196783", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196783", "resource": "Reactome", "description": "Coenzyme A biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3S5ZP75-1", "protein_name": "Phosphopantothenate--cysteine ligase", "gene_name": "PPCS", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAVDLVAEFPQPAGAARWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGASSAEAFLAAGYGVLFLYRARSAFPFAHRFPPQTWLSVLRPSSQAPSGLLSLEAEEKALPGFAAALRSYQEAEAAGTFLAIEFTTLADYLHLLQAAAQALNPLGSSAMFYLAAAVSDFYVPASEMPEHKIQSSGGPLQITMKMVPKMLSPLVKDWAPKAFIISFKLETDPSIIIDRARNALEVYRHQVVVANILDSRRSSVVIITKDSETKLLLSEEEVEKGIEIEEKIVDDLQSRHTAFIHDKN", "length": 311 }, "evidence": [ { "id": "F1SF93", "url": "https://omabrowser.org/oma/group/F1SF93/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A6X7-1", "protein_name": "Phosphopantothenate--cysteine ligase", "gene_name": "Ppcs", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEMDLVAELPRPEGAARWAEVMARFAARLGEQGRRVVLVTSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLAAGYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQGYQEAAAAGTFLAVEFTTLADYLHLLQAAALALNPLGSSAMFYLAAAVSDFYIPVSEMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFIVSFKLETDPDIIISRARNALEVYQHQVVVANILESIKSFVIIVTKDSETKLLLSEDEVARGMVIEEKIVDDLRSRHTAFICDRN", "length": 311 }, "evidence": [ { "id": "F1SF93", "url": "https://omabrowser.org/oma/group/F1SF93/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3IEX5-1", "protein_name": "Phosphopantothenate--cysteine ligase", "gene_name": "Ppcs", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEMDLAADLPPPEGAARWADVMARFAASLGAQGRRVVLVTSGGTKVPLEARAVRFLDNFSSGRRGAKSVEVFLAAGYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLRLEAEENALPGFAAALQSYQEAAAAGTFLAIEFTTLADYLHLLQAAAQALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFIVSFKLETDPSIIINRARNALEVYQHQVVVANILESIQSFVIIVTKDSETKLLLSEDEIAKGMVIEEKIVEDLRSRHTAFICDKN", "length": 311 }, "evidence": [ { "id": "F1SF93", "url": "https://omabrowser.org/oma/group/F1SF93/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P40506-1", "protein_name": "Phosphopantothenate--cysteine ligase CAB2", "gene_name": "CAB2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MPPLPVLNRPQIHTSVTEISHAIDRTIKEELFPVAYTTEEEQYFKTNPKPAYIDELIKDAKEFIDLQYSLKRNKIVLITSGGTTVPLENNTVRFIDNFSAGTRGASSAEQFLANGYSVIFLHREFSLTPYNRSFSHSINTLFLDYIDSEGKIKPEFAENVLKNKKLYDKYMEKEEKLLLLPFTTVNQYLWSLKSIAKLLNNSGCLFYLAAAVSDFFVPYSRLPQHKIQSGDNGKMGANNDTEGTTRTTPDGKLIVNLDPVPKFLRRLVESWATQAMIVSFKLETDESMLLYKCTQALDRYNHQLVIGNLLQTRNKQVIFVSPENRKGDWVRLDEKHHSIEEMIIPEVIARHDKWVAHSKTKLATK", "length": 365 }, "evidence": [ { "id": "F1SF93", "url": "https://omabrowser.org/oma/group/F1SF93/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54S85-1", "protein_name": "Phosphopantothenatecysteine ligase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVEENFFKSVDLHKDFSEDLNRVKNFKERAIKNNAKVILITSGGTIVPFEKNMVRFLDNFSGGNRGATTAEYFLQKGYYVLFLSRKNSLQPFVKNLMLHETNFFTYLGINENDGGNGRNNNNNNNENEFKNDNDTILSPSLDVIKNHVCIGEDYYYEVSKEYLKWKKFCENGSLERVNFETVGEYLYLLKNISTELSILKSNLIVYAAAAVSDFYIPLDMMAQHKIQSKNQSLTITLDPVPKMIKFLVDNWCPNSYIVTFKLETDQTILNEKCLASLSNYNHQLVIGNLLSDYRNWVIFHQQQSKPIIVKRELTQFQIQQQQKLSPSSSYSLKNDNHDHHHDHHHDHHDHDHQHQQKQPIGVDHPIEYNIGEKLIELHNEFINKNSN", "length": 389 }, "evidence": [ { "id": "F1SF93", "url": "https://omabrowser.org/oma/group/F1SF93/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8GXR5-1", "protein_name": "Phosphopantothenate--cysteine ligase 1", "gene_name": "PPCS1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISGLVEDEISSFFESSPPLKNKEEIVANLNQFIELNSSCQGGMRRIVCVTSGGTTVPLEQRCVRYIDNFSSGNRGAASTENFVKAGYAVIFLYRRGTCQPYCRYLPDDPFLECFEFPDAKNIQVHGSHSGAVKMAVMDQQAAVAEGRLLKLPFSTIYEYLQMLRLIATILKDVGPCSMFYLAAAVSDFYVPWLSMTEHKIESGSGPLDIRLAQVPKMLSILRSNWAPKAFCISFKLETDSKILLEKATKALQKYKVHAVVANELLTRKEEVVVVSSSGNVVVRRDSNKPESIVEDNLIRLLVDRHSTYIKESLT", "length": 317 }, "evidence": [ { "id": "F1SF93", "url": "https://omabrowser.org/oma/group/F1SF93/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VDG5-1", "protein_name": "Phosphopantothenate--cysteine ligase", "gene_name": "Ppcs", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEMDLVAELPRPAGAARWAEVMARFAARLGEQGRRVVLITSGGTKVPLEARAVRFLDNFSSGRRGAASAEVFLAAGYGVLFLYRARSAFPYAHRFPPQAWLSALRPSGPAQSGKLSLEAEENALPGFAAALQSYQEAAAAGTFLAVEFTTLADYLHLLQAAALALSPLGSSAMFYLAAAVSDFYIPVSEMPEHKIHSSGGPLQITMKMVPKMLSPLVKDWAPKAFVVSFKLETDPDIIISRARNALEVYQHQVVVANILESIKSFVIIVTKDSETELLLSEEEVAKGLVIEEKIVDDLRSRHTAFICDKN", "length": 311 }, "evidence": [ { "id": "F1SF93", "url": "https://omabrowser.org/oma/group/F1SF93/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HAB8-1", "protein_name": "Phosphopantothenate--cysteine ligase", "gene_name": "PPCS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEMDPVAEFPQPPGAARWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQSRHTAFIGDRN", "length": 311 }, "evidence": [ { "id": "F1SF93", "url": "https://omabrowser.org/oma/group/F1SF93/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphopantothenate--cysteine ligase activity", "id": "GO:0004632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004632", "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "acetyl-CoA biosynthetic process", "id": "GO:0006085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006085", "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ], "pmid": "" }, { "name": "coenzyme A biosynthetic process", "id": "GO:0015937", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015937", "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ], "pmid": "" }, { "name": "heart process", "id": "GO:0003015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003015", "evidence": [ { "database": "UniProtKB", "id": "F1SF93", "url": "https://www.uniprot.org/uniprotkb/F1SF93" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19397", "name": "", "equation": "(R)-4'-phosphopantothenate + L-cysteine + CTP = N-[(R)-4-phosphopantothenoyl]-L-cysteine + CMP + diphosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19397", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19397" } ] }, { "id": "25156", "name": "", "equation": "(R)-4'-phosphopantothenate + L-cysteine + ATP = N-[(R)-4-phosphopantothenoyl]-L-cysteine + AMP + diphosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "25156", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25156" } ] }, { "id": "R-SSC-196753", "name": "2xPPCS ligates PPanK with Cys", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-196786" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-196753", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196753" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-196786", "participant_name": "PPanK [cytosol]", "crossref": [ { "id": "10986", "database": "ChEBI", "url": "" }, { "id": "ZINC000001529671", "database": "ZINC", "url": "" }, { "id": "C03492", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SF93-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SF93-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SF93" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SF93", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SF93" }, { "id": "PF04127", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04127" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA/pantothenate metabolism flavoprotein C-terminal", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 82, "start_aa": "Arg", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 59, "end_pos": 61 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFA0-1", "uniprot_ac": "F1SFA0", "uniprot_id": "F1SFA0_PIG", "mass": { "chemical_mass": 35051.0, "monoisotopic_mass": 35051.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Olfactory receptor family 10 subfamily AK member 7H", "type": "synonym", "evidence": [ { "id": "F1SFA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFA0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SFA0", "url": "https://www.uniprot.org/uniprotkb/F1SFA0#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFA0", "url": "https://www.uniprot.org/uniprotkb/F1SFA0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SFA0", "locus": {} } ], "crossref": [ { "id": "F1SFA0", "url": "https://alphafold.ebi.ac.uk/entry/F1SFA0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000039458", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000039458", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15946", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15946", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SFA0", "url": "https://www.uniprot.org/uniprotkb/F1SFA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LPGQNQSCWVSEFILRGFSCDPMSNRILFIAFLLLYLSSVLGNGLIVILICLDVNLHTPMYFFLCILSLLDVGCVTTTVPQMLVHLLAQSQTIAFAGCWLQMYVFGTLGLTECLLFVVMAYDRYVAICYPLRYTVLLSWGLCTRLAAGTWACGFFSSLIHTFSTMRLPYCGPNVVNHYFCEGPSVRSLACTDTHLIAMVDLVISVFMVVVPLSLILASYISIVQAILKIKSTQARCKAFSTCASHLTVVTFFYAPATYIYMRPNSSYSPERDKQISLFYNVFTALLNPVVYSLRNKDIKGAFFKEGPGVEHPVL", "length": 314, "header": "tr|F1SFA0-1|F1SFA0_PIG Isoform 1 of Olfactory receptor family 10 subfamily AK member 7H OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SFA0-1" }, "isoforms": [ { "isoform_ac": "F1SFA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFA0/entry#F1SFA0-1", "sequence": { "sequence": "LPGQNQSCWVSEFILRGFSCDPMSNRILFIAFLLLYLSSVLGNGLIVILICLDVNLHTPMYFFLCILSLLDVGCVTTTVPQMLVHLLAQSQTIAFAGCWLQMYVFGTLGLTECLLFVVMAYDRYVAICYPLRYTVLLSWGLCTRLAAGTWACGFFSSLIHTFSTMRLPYCGPNVVNHYFCEGPSVRSLACTDTHLIAMVDLVISVFMVVVPLSLILASYISIVQAILKIKSTQARCKAFSTCASHLTVVTFFYAPATYIYMRPNSSYSPERDKQISLFYNVFTALLNPVVYSLRNKDIKGAFFKEGPGVEHPVL", "length": 314, "header": "tr|F1SFA0-1|F1SFA0_PIG Isoform 1 of Olfactory receptor family 10 subfamily AK member 7H OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SFA0-1" }, "locus": { "chromosome": "6", "start_pos": 168283118, "end_pos": 168259459, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004380.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004380.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004280.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004280.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFA0", "url": "https://www.uniprot.org/uniprotkb/F1SFA0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SFA0", "url": "https://www.uniprot.org/uniprotkb/F1SFA0" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SFA0", "url": "https://www.uniprot.org/uniprotkb/F1SFA0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFA0", "url": "https://www.uniprot.org/uniprotkb/F1SFA0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SFA0", "url": "https://www.uniprot.org/uniprotkb/F1SFA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFA0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 314, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFA0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFA0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFA0" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 291, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 264, "end_pos": 266 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFB2-1", "uniprot_ac": "F1SFB2", "uniprot_id": "F1SFB2_PIG", "mass": { "chemical_mass": 35400.0, "monoisotopic_mass": 35400.0 }, "refseq": { "ac": "XP_003482161", "name": "olfactory receptor 2D3-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482161" }, "gene_names": [ { "name": "LOC100737983", "type": "recommended", "evidence": [ { "id": "F1SFB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB2" } ] }, { "name": "LOC100737983", "type": "synonym", "evidence": [ { "id": "XP_003482161", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482161" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SFB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB2/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 2D3-like", "type": "synonym", "evidence": [ { "id": "XP_003482161", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482161" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SFB2", "url": "https://www.uniprot.org/uniprotkb/F1SFB2#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFB2", "url": "https://www.uniprot.org/uniprotkb/F1SFB2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100737983", "url": "https://www.uniprot.org/uniprotkb/F1SFB2", "locus": {} } ], "crossref": [ { "id": "F1SFB2", "url": "https://alphafold.ebi.ac.uk/entry/F1SFB2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100737983", "url": "https://www.ncbi.nlm.nih.gov/gene/100737983", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737983", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737983", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LHYRVKM", "url": "https://omabrowser.org/oma/group/LHYRVKM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFB2", "url": "https://www.orthodb.org/?gene=F1SFB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003482161", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482161", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFB2", "url": "https://www.uniprot.org/uniprotkb/F1SFB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFB2-1", "url": "https://www.uniprot.org/uniprotkb/F1SFB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHSRGWKNHSSVTEFILLGFSRSPRTNWILFFLFLFLYLLTVLGNGLIVTLIRVDAHLHTPMYFFLSILSLLDLSYATTTVPQMLIHLVSDSKTISYVGCVVQMYVFLTLGITETWIFAAMAYDRYVAICYPLHYGVKMSQTLCVLLAVSSAFCGITCALVYTVFAMNLPYCGPNEINHFFCEIPAVLKLACADTTLNDQVDFILGFILLLIPLSLILASYVRIFVAILKIRSTQGRIKAFSTCASHITVVTMFCIPCMVMYMRPGSEASPEGDKKLALFYNVISAFLNPIIYSLRNKDVKRAFLKLVGMSEDAQ", "length": 315, "header": "tr|F1SFB2-1|F1SFB2_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100737983 PE=3 SV=1 CANONICAL=F1SFB2-1" }, "isoforms": [ { "isoform_ac": "F1SFB2-1", "url": "https://www.uniprot.org/uniprotkb/F1SFB2/entry#F1SFB2-1", "sequence": { "sequence": "MHSRGWKNHSSVTEFILLGFSRSPRTNWILFFLFLFLYLLTVLGNGLIVTLIRVDAHLHTPMYFFLSILSLLDLSYATTTVPQMLIHLVSDSKTISYVGCVVQMYVFLTLGITETWIFAAMAYDRYVAICYPLHYGVKMSQTLCVLLAVSSAFCGITCALVYTVFAMNLPYCGPNEINHFFCEIPAVLKLACADTTLNDQVDFILGFILLLIPLSLILASYVRIFVAILKIRSTQGRIKAFSTCASHITVVTMFCIPCMVMYMRPGSEASPEGDKKLALFYNVISAFLNPIIYSLRNKDVKRAFLKLVGMSEDAQ", "length": 315, "header": "tr|F1SFB2-1|F1SFB2_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100737983 PE=3 SV=1 CANONICAL=F1SFB2-1" }, "locus": { "chromosome": "6", "start_pos": 168146473, "end_pos": 168145529, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004378.3", "url": "https://www.ensembl.org/id/ENSSSCT00000004378.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004278.1", "url": "https://www.ensembl.org/id/ENSSSCP00000004278.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFB2", "url": "https://www.uniprot.org/uniprotkb/F1SFB2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737983", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737983", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HFI3-1", "protein_name": "Olfactory receptor 2A5", "gene_name": "LOC100770820", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHNRGWKNHSSVTEFILLGFSRNPRTNWILFFLFFFLYLFTVLGNGLIVTLIRIDARLHTPMYFFLSILSMLDLSYATTTVPQMLAHLVSKNKTISYTGCVIQMYIFLTLGITETWIFAAMAYDRYVAICYPLHYGVKMSQTLCITLVASSALCGLICALVYTVFAMNLPYCGPNEINHFFCEIPAVLKLACADTSLNDQVDFILGFILLLIPLSLILASYVRIFIAILRIRSTQGRMKAFSTCASHITVVTMFCIPCMVMYMRPGSEATPEDDKKLALFYNVISAFLNPIIYSLRNKDVKRAFFKLIGRGEDTP", "length": 315 }, "evidence": [ { "id": "F1SFB2", "url": "https://omabrowser.org/oma/group/F1SFB2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "M0R571-1", "protein_name": "Olfactory receptor family 13 subfamily P member 8B", "gene_name": "Or13p8b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHSRGWRNHSFVTEFILLGFSRNPKTNWILFFLFLFLFLYLFTVLGNGLIVTLIRIDARLHTPMYFFLSILSLLDLSYATTTVPQMLVHLVSKNKAISYTGCVIQMYIFLTLGITETWIFAAMAYDRYVAICYPLHYGVKMSQTLCIALVTSSALCGLICALVYTVFAMTLPYCGPNEINHFFCEIPAVLKLACADTSLNDQVDFILGFILLLIPLSLILASYVRIFIAILRIRSTQGRMKAFSTCASHITVVTMFCVPCMVMYMRPGSEASPEDDKKLALFYNVISAFLNPIIYSLRNKDVKRAFLKLIGRGEDTQ", "length": 317 }, "evidence": [ { "id": "F1SFB2", "url": "https://omabrowser.org/oma/group/F1SFB2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SFB2", "url": "https://www.uniprot.org/uniprotkb/F1SFB2" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SFB2", "url": "https://www.uniprot.org/uniprotkb/F1SFB2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFB2", "url": "https://www.uniprot.org/uniprotkb/F1SFB2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SFB2", "url": "https://www.uniprot.org/uniprotkb/F1SFB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFB2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 315, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFB2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFB2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB2" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 293, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFB3-1", "uniprot_ac": "F1SFB3", "uniprot_id": "F1SFB3_PIG", "mass": { "chemical_mass": 34854.0, "monoisotopic_mass": 34854.0 }, "refseq": { "ac": "XP_020953289", "name": "olfactory receptor 2A12-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953289" }, "gene_names": [ { "name": "LOC100737941", "type": "recommended", "evidence": [ { "id": "F1SFB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB3" } ] }, { "name": "LOC100737941", "type": "synonym", "evidence": [ { "id": "XP_020953289", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953289" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SFB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB3/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 2A12-like", "type": "synonym", "evidence": [ { "id": "XP_020953289", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953289" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SFB3", "url": "https://www.uniprot.org/uniprotkb/F1SFB3#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFB3", "url": "https://www.uniprot.org/uniprotkb/F1SFB3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100737941", "url": "https://www.uniprot.org/uniprotkb/F1SFB3", "locus": {} } ], "crossref": [ { "id": "F1SFB3", "url": "https://alphafold.ebi.ac.uk/entry/F1SFB3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003958", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003958", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737941", "url": "https://www.ncbi.nlm.nih.gov/gene/100737941", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737941", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737941", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YMKPGSE", "url": "https://omabrowser.org/oma/group/YMKPGSE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFB3", "url": "https://www.orthodb.org/?gene=F1SFB3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020953289", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953289", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFB3", "url": "https://www.uniprot.org/uniprotkb/F1SFB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFB3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGSNQSSVTEFILLGFSFSPGTTPLFFSAFLITYLLIILGNSLITSLIFLDSHLHIPMYFFIGVLSMLDLGYTTTTMPQMLAHMASQKTTISFASCVAQMYIFLVLGITESWLFAIMSIDRYVAICHPLRYKVIMSPWLCWVLVIFCGLWGIISALVYTVFAMRLPYCGPNKINHFFCEVPAVLKLACADTSLNDQVDFILGFSVILVPLSLILVVYINIFIAVGRIRSAHGRRKAFSTCASHITVVTMFCVPAMVMYMKPGSEASPEEDKMLALFYNVISAFLNPIIYSLRNKDVKKAFLKVMGWGRAPG", "length": 312, "header": "tr|F1SFB3-1|F1SFB3_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100737941 PE=3 SV=1 CANONICAL=F1SFB3-1" }, "isoforms": [ { "isoform_ac": "F1SFB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFB3/entry#F1SFB3-1", "sequence": { "sequence": "MQGSNQSSVTEFILLGFSFSPGTTPLFFSAFLITYLLIILGNSLITSLIFLDSHLHIPMYFFIGVLSMLDLGYTTTTMPQMLAHMASQKTTISFASCVAQMYIFLVLGITESWLFAIMSIDRYVAICHPLRYKVIMSPWLCWVLVIFCGLWGIISALVYTVFAMRLPYCGPNKINHFFCEVPAVLKLACADTSLNDQVDFILGFSVILVPLSLILVVYINIFIAVGRIRSAHGRRKAFSTCASHITVVTMFCVPAMVMYMKPGSEASPEEDKMLALFYNVISAFLNPIIYSLRNKDVKKAFLKVMGWGRAPG", "length": 312, "header": "tr|F1SFB3-1|F1SFB3_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100737941 PE=3 SV=1 CANONICAL=F1SFB3-1" }, "locus": { "chromosome": "6", "start_pos": 168133177, "end_pos": 168132242, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004377.3", "url": "https://www.ensembl.org/id/ENSSSCT00000004377.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004277.1", "url": "https://www.ensembl.org/id/ENSSSCP00000004277.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFB3", "url": "https://www.uniprot.org/uniprotkb/F1SFB3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737941", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737941", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZMZ6-1", "protein_name": "Olfactory receptor family 13 subfamily P member 3", "gene_name": "Or13p3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQGSNQTFVTEFILLGFSLSPRTTPLLFSAFLTLYMLILLGNGLIFILICLDSRLHTPMYFFIGVLSMLDLGYTTTTVPQMLAHLASQKKTISYSNCVTQMFIFLVLGVTESWLFAIMSIDRYVAICHPLRYKVIMSPCLCGVMAIFCGLCGVTAALVYTIFAMRLPYCGPNKINHFFCEVPAVLKLACADTSVNDHVDFILGFSVILIPLSLILVIYVNIFTSILKIRSAQGRLKAFSTCASHITVVTMFCVPAMVMYMKPGSKASPEEDKKLALFYNVISAFLNPVIYSLRNKDVKRAFLKVTGWGRSPE", "length": 312 }, "evidence": [ { "id": "F1SFB3", "url": "https://omabrowser.org/oma/group/F1SFB3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HFI2-1", "protein_name": "Olfactory receptor 2A2", "gene_name": "LOC100770537", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQSPNQTFVTEFILLGFSLSPRNTPLLFSAFLMIYLLIIVGNGLIFILICLDSHLHTPMYFFIGILSMLDLGYTTTTVPQMLAHLASQKKTISYSSCVAQMYIFLVLGVTESWLFAIMSIDRYVAICHPLRYRVIMSPCLCGGMVIFCGLCGVTSALVYTIFAMRLPYCGPNKINHFFCEVPAVLKLACADTSVNDQVDFILGFSVILIPLSLILVIYVNIFISILKIRSAQGRLKAFSTCASHITVVTMFCVPAMVMYMKPGSKASPEEDKKLALFYNVISAFLNPVIYSLRNKDVKRAFLKVTGWGRPPE", "length": 312 }, "evidence": [ { "id": "F1SFB3", "url": "https://omabrowser.org/oma/group/F1SFB3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q7TQV4-1", "protein_name": "Olfactory receptor family 13 subfamily P member 3", "gene_name": "Or13p3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQGPNQTFVTEFILLGFSLSPRTTPLLFSAFLIIYLLIILGNGLIFILICLDSHLHTPMYFFIGVLSMLDLGYTTTTVPQMLAHLASQKKTISYSNCVAQMYIFLVLGVTESWLFAIMSIDRYVAICHPLRYKVIMSPCLCGVMAIFCGLCGVTAALVYTIFAMRLPYCGPNKINHFFCEVPAVLKLACADTSVNDHVDFILGFSVILIPLSLILVIYINIFTSILKIRSAQGRLKAFSTCASHITVVTMFCVPAMVMYMKPGSKASPEEDKKLALFYNVISAFLNPVIYSLRNKDVKRAFLKVTGCGRPPE", "length": 312 }, "evidence": [ { "id": "F1SFB3", "url": "https://omabrowser.org/oma/group/F1SFB3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SFB3", "url": "https://www.uniprot.org/uniprotkb/F1SFB3" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SFB3", "url": "https://www.uniprot.org/uniprotkb/F1SFB3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFB3", "url": "https://www.uniprot.org/uniprotkb/F1SFB3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SFB3", "url": "https://www.uniprot.org/uniprotkb/F1SFB3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFB3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFB3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFB3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB3" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFB4-1", "uniprot_ac": "F1SFB4", "uniprot_id": "F1SFB4_PIG", "mass": { "chemical_mass": 35471.0, "monoisotopic_mass": 35471.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100522147", "type": "recommended", "evidence": [ { "id": "F1SFB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB4" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SFB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SFB4", "url": "https://www.uniprot.org/uniprotkb/F1SFB4#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFB4", "url": "https://www.uniprot.org/uniprotkb/F1SFB4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100522147", "url": "https://www.uniprot.org/uniprotkb/F1SFB4", "locus": {} } ], "crossref": [ { "id": "F1SFB4", "url": "https://alphafold.ebi.ac.uk/entry/F1SFB4", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SFB4", "url": "https://www.uniprot.org/uniprotkb/F1SFB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSLSKENRSSVSEFILLGFSTESQVRMALFTFFLLLYLITLVGNGLIVALTYLDARLHTPMYFLLSTLSLVDVSYVSTTVPQMLVNLVYPRRTISWGACVAQMFIFLVLGIAECVLYAAMAYDRYIAICFPLRYTLLLSGPICVKMVTACCSIGIAGALIYTVFTMRLPYCGPYKINHFFCEVPAVLKLACADTSLNDRLDFILGFILLLVPLSCILASYICIFASILRIRSSQGRLKSFSTCASHITVVTMFYGPAMVMYMRPGSWYDPERDKKLALFYNVVSAFLNPIIYSLRNKRVKRAFLKVLGDRGTAPE", "length": 316, "header": "tr|F1SFB4-1|F1SFB4_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100522147 PE=3 SV=2 CANONICAL=F1SFB4-1" }, "isoforms": [ { "isoform_ac": "F1SFB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFB4/entry#F1SFB4-1", "sequence": { "sequence": "MQSLSKENRSSVSEFILLGFSTESQVRMALFTFFLLLYLITLVGNGLIVALTYLDARLHTPMYFLLSTLSLVDVSYVSTTVPQMLVNLVYPRRTISWGACVAQMFIFLVLGIAECVLYAAMAYDRYIAICFPLRYTLLLSGPICVKMVTACCSIGIAGALIYTVFTMRLPYCGPYKINHFFCEVPAVLKLACADTSLNDRLDFILGFILLLVPLSCILASYICIFASILRIRSSQGRLKSFSTCASHITVVTMFYGPAMVMYMRPGSWYDPERDKKLALFYNVVSAFLNPIIYSLRNKRVKRAFLKVLGDRGTAPE", "length": 316, "header": "tr|F1SFB4-1|F1SFB4_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100522147 PE=3 SV=2 CANONICAL=F1SFB4-1" }, "locus": { "chromosome": "6", "start_pos": 168120007, "end_pos": 168107850, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004376.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004376.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004276.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004276.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFB4", "url": "https://www.uniprot.org/uniprotkb/F1SFB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SFB4", "url": "https://www.uniprot.org/uniprotkb/F1SFB4" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SFB4", "url": "https://www.uniprot.org/uniprotkb/F1SFB4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFB4", "url": "https://www.uniprot.org/uniprotkb/F1SFB4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SFB4", "url": "https://www.uniprot.org/uniprotkb/F1SFB4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFB4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFB4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFB4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB4" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 293, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFB6-1", "uniprot_ac": "F1SFB6", "uniprot_id": "F1SFB6_PIG", "mass": { "chemical_mass": 37199.0, "monoisotopic_mass": 37199.0 }, "refseq": { "ac": "XP_003128137", "name": "olfactory receptor 2A12-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128137" }, "gene_names": [ { "name": "LOC100521802", "type": "recommended", "evidence": [ { "id": "F1SFB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB6" } ] }, { "name": "LOC100521802", "type": "synonym", "evidence": [ { "id": "XP_003128137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128137" } ] } ], "protein_names": [ { "name": "G-protein coupled receptors family 1 profile domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SFB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB6/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 2A12-like", "type": "synonym", "evidence": [ { "id": "XP_003128137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128137" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SFB6", "url": "https://www.uniprot.org/uniprotkb/F1SFB6#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFB6", "url": "https://www.uniprot.org/uniprotkb/F1SFB6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100521802", "url": "https://www.uniprot.org/uniprotkb/F1SFB6", "locus": {} } ], "crossref": [ { "id": "F1SFB6", "url": "https://alphafold.ebi.ac.uk/entry/F1SFB6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15946", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15946", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521802", "url": "https://www.ncbi.nlm.nih.gov/gene/100521802", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521802", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521802", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGFWGIS", "url": "https://omabrowser.org/oma/group/CGFWGIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFB6", "url": "https://www.orthodb.org/?gene=F1SFB6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003128137", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128137", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFB6", "url": "https://www.uniprot.org/uniprotkb/F1SFB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFB6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFB6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQDFLLRNHSSLAEFILLGFSSNTEINVILFSVFLFLYLITLSGNGLIFTLIRMDSRLHTPMYFFLSVLSILDMGYVTTTVPQMLVHLVCKKKTISYVGCVAQMYIFLMLGITESWLFAIMAYDRYVAICHPLRYKVIMSPLLCGSMVAFCGFWGISCALIYTVSAMVLPYCGPNEINHFFCEVPAVLKLACADTSLNDRVDFILGFILLLVPLSLIVIVYINIFTAVLRIRSSQGRLKAFSTCASHITVVTMFSVPCMVMYMRPGSEASPEEDKKLALFYNVISAFLNPIIYSLRNKDVKGAFLKATGWGNAPARSQRSMGTSSKPRTRPT", "length": 332, "header": "tr|F1SFB6-1|F1SFB6_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100521802 PE=3 SV=3 CANONICAL=F1SFB6-1" }, "isoforms": [ { "isoform_ac": "F1SFB6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFB6/entry#F1SFB6-1", "sequence": { "sequence": "MQDFLLRNHSSLAEFILLGFSSNTEINVILFSVFLFLYLITLSGNGLIFTLIRMDSRLHTPMYFFLSVLSILDMGYVTTTVPQMLVHLVCKKKTISYVGCVAQMYIFLMLGITESWLFAIMAYDRYVAICHPLRYKVIMSPLLCGSMVAFCGFWGISCALIYTVSAMVLPYCGPNEINHFFCEVPAVLKLACADTSLNDRVDFILGFILLLVPLSLIVIVYINIFTAVLRIRSSQGRLKAFSTCASHITVVTMFSVPCMVMYMRPGSEASPEEDKKLALFYNVISAFLNPIIYSLRNKDVKGAFLKATGWGNAPARSQRSMGTSSKPRTRPT", "length": 332, "header": "tr|F1SFB6-1|F1SFB6_PIG Isoform 1 of G-protein coupled receptors family 1 profile domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100521802 PE=3 SV=3 CANONICAL=F1SFB6-1" }, "locus": { "chromosome": "6", "start_pos": 168102467, "end_pos": 168101472, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004374.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004374.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004274.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004274.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFB6", "url": "https://www.uniprot.org/uniprotkb/F1SFB6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521802", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521802", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "L7MU75-1", "protein_name": "Olfactory receptor family 13 subfamily P member 10", "gene_name": "Or13p10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQDFLWRNRSSLTEFVLLGFSSNTQINGILFGIFLLLYLTTLLGNGLIITLIHMDSRLHTPMYFFLSVLSILDMGYVTTTVPQMLVHLVCKKKTISYVGCVAQMYIFLMLGITESWLFAIMAYDRYVAICHPLRYKVIMSPLLRGSLVAFCGFWGITCALIYTVSAMILPYCGPNEINHFFCEVPAVLKLACADTSLNDQVDFILGFILLLVPLSLIIVVYINIFAAILRIRSTQGRIKAFSTCVSHIIVVTMFSIPCMVMYMRPGSESSPEEDKKLALFYNVISAFLNPIIYSLRNKDVKRAFLKVVGSRKGSE", "length": 315 }, "evidence": [ { "id": "F1SFB6", "url": "https://omabrowser.org/oma/group/F1SFB6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R4F0-1", "protein_name": "Olfactory receptor family 13 subfamily P member 10", "gene_name": "Or13p10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQDFLWRNRSSLTEFVLLGFSSDTRINGTLFGVFLLLYLSTLLGNGLIITLIHMDSRLHTPMYFFLSILSILDMGYVTTTVPQMLVHLVCEKKTISYVGCVAQMYIFLMLGITESWLFAIMAYDRYVAICHPLRYKVIMSPLLRGSLVAFCGFWGITCALIYTVSAMILPYCGPNEINHFFCEVPAVLKLACTDTSLNDQVDFILGFILLLVPLSLIIVVYINIFAAILRIRSTQGRIKAFSTCVSHITVVTMFSIPCMVMYMRPGSESSPEEDKKLALFYNVISAFLNPIIYSLRNKDVKRAFLKVVGSSKGSG", "length": 315 }, "evidence": [ { "id": "F1SFB6", "url": "https://omabrowser.org/oma/group/F1SFB6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SFB6", "url": "https://www.uniprot.org/uniprotkb/F1SFB6" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SFB6", "url": "https://www.uniprot.org/uniprotkb/F1SFB6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFB6", "url": "https://www.uniprot.org/uniprotkb/F1SFB6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SFB6", "url": "https://www.uniprot.org/uniprotkb/F1SFB6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFB6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 332, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFB6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFB6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFB6" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 293, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFC8-1", "uniprot_ac": "F1SFC8", "uniprot_id": "F1SFC8_PIG", "mass": { "chemical_mass": 41701.0, "monoisotopic_mass": 41701.0 }, "refseq": {}, "gene_names": [ { "name": "RBM48", "type": "recommended", "evidence": [ { "id": "F1SFC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFC8" } ] } ], "protein_names": [ { "name": "RNA-binding protein 48", "type": "recommended", "evidence": [ { "id": "F1SFC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFC8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs.", "evidence": [ { "database": "UniProtKB", "id": "F1SFC8", "url": "https://www.uniprot.org/uniprotkb/F1SFC8#function" }, { "database": "UniProtKB", "id": "ARBA00035004", "url": "https://www.uniprot.org/uniprotkb/ARBA00035004#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFC8", "url": "https://www.uniprot.org/uniprotkb/F1SFC8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBM48", "url": "https://www.uniprot.org/uniprotkb/F1SFC8", "locus": { "chromosome": "9", "start_pos": 72456397, "end_pos": 72444828, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015315", "url": "https://www.ensembl.org/id/ENSSSCG00000015315" } ] } } ], "crossref": [ { "id": "F1SFC8", "url": "https://alphafold.ebi.ac.uk/entry/F1SFC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015315", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015315", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12442", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12442", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR034264", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034264", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR20957", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20957", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20957:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20957:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28333", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28333", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SFC8", "url": "https://www.uniprot.org/uniprotkb/F1SFC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALSGGQLGGLFDHHVQRAVCDSRAKYREGRRPRAVRVYTINLESRYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFLNLQSARIAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQERNAYIARTTKNKDHYMTKKKLDTAHKHERDFRQDFHSKTSGFSAATLNTSTGNSDLCLPYSCELPLCFFSPKCMCSSGTHVDRASDSCQEGRNCDGTLELCNRNDALQKMQVKTCKNSLGCPGAQKAVTSSEAVDRFMPRTTQLQERKRRREDDRKLGAFLEASTSSNEVMIGPLLPDIPKVDMHDDSLNTTANLIRNKLKEVISSVPKPPENKLEDVHRSHPLKQRRRI", "length": 367, "header": "tr|F1SFC8-1|F1SFC8_PIG Isoform 1 of RNA-binding protein 48 OS=Sus scrofa OX=9823 GN=RBM48 PE=3 SV=4 CANONICAL=F1SFC8-1" }, "isoforms": [ { "isoform_ac": "F1SFC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFC8/entry#F1SFC8-1", "sequence": { "sequence": "MALSGGQLGGLFDHHVQRAVCDSRAKYREGRRPRAVRVYTINLESRYLLIQGVPAVGAMKELVERFALYGAIEQYNALDEYPAEDFTEVYLIKFLNLQSARIAKRKMDEQSFFGGLLHVCYAPEFETVEETRKKLQERNAYIARTTKNKDHYMTKKKLDTAHKHERDFRQDFHSKTSGFSAATLNTSTGNSDLCLPYSCELPLCFFSPKCMCSSGTHVDRASDSCQEGRNCDGTLELCNRNDALQKMQVKTCKNSLGCPGAQKAVTSSEAVDRFMPRTTQLQERKRRREDDRKLGAFLEASTSSNEVMIGPLLPDIPKVDMHDDSLNTTANLIRNKLKEVISSVPKPPENKLEDVHRSHPLKQRRRI", "length": 367, "header": "tr|F1SFC8-1|F1SFC8_PIG Isoform 1 of RNA-binding protein 48 OS=Sus scrofa OX=9823 GN=RBM48 PE=3 SV=4 CANONICAL=F1SFC8-1" }, "locus": { "chromosome": "9", "start_pos": 72452042, "end_pos": 72444844, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016688.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016688.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016242.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016242.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFC8", "url": "https://www.uniprot.org/uniprotkb/F1SFC8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SFC8", "url": "https://www.uniprot.org/uniprotkb/F1SFC8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SFC8", "url": "https://www.uniprot.org/uniprotkb/F1SFC8" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "F1SFC8", "url": "https://www.uniprot.org/uniprotkb/F1SFC8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SFC8", "url": "https://www.uniprot.org/uniprotkb/F1SFC8" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F1SFC8", "url": "https://www.uniprot.org/uniprotkb/F1SFC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 327, "end_pos": 329, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFC8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 367, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFC8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFC8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFC8" }, { "id": "PF28333", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28333" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNA-binding protein 48 helix", "eco_id": "ECO_0000259", "start_pos": 128, "end_pos": 163, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 185, "end_pos": 187 }, { "start_pos": 327, "end_pos": 329 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFF0-1", "uniprot_ac": "F1SFF0", "uniprot_id": "F1SFF0_PIG", "mass": { "chemical_mass": 40158.0, "monoisotopic_mass": 40158.0 }, "refseq": { "ac": "XP_003353536", "name": "prostaglandin E2 receptor EP2 subtype", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353536" }, "gene_names": [ { "name": "PTGER2", "type": "recommended", "evidence": [ { "id": "F1SFF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" } ] }, { "name": "PTGER2", "type": "synonym", "evidence": [ { "id": "XP_003353536", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353536" } ] } ], "protein_names": [ { "name": "Prostaglandin E2 receptor EP2 subtype", "type": "recommended", "evidence": [ { "id": "F1SFF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF0/entry#names_and_taxonomy" } ] }, { "name": "Prostanoid EP2 receptor", "type": "synonym", "evidence": [ { "id": "F1SFF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF0/entry#names_and_taxonomy" } ] }, { "name": "prostaglandin E2 receptor EP2 subtype", "type": "synonym", "evidence": [ { "id": "XP_003353536", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353536" } ] } ], "function": [ { "annotation": "Receptor for prostaglandin E2 (PGE2). The activity of this receptor is mediated by G(s) proteins that stimulate adenylate cyclase. The subsequent raise in intracellular cAMP is responsible for the relaxing effect of this receptor on smooth muscle.", "evidence": [ { "database": "UniProtKB", "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0#function" }, { "database": "UniProtKB", "id": "ARBA00055790", "url": "https://www.uniprot.org/uniprotkb/ARBA00055790#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTGER2", "url": "https://www.uniprot.org/uniprotkb/F1SFF0", "locus": { "chromosome": "1", "start_pos": 182009953, "end_pos": 181994560, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021862", "url": "https://www.ensembl.org/id/ENSSSCG00000021862" } ] } } ], "crossref": [ { "id": "F1SFF0", "url": "https://alphafold.ebi.ac.uk/entry/F1SFF0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021862", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021862", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15139", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15139", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100127164", "url": "https://www.ncbi.nlm.nih.gov/gene/100127164", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001923", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001923", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100127164", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100127164", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFF0", "url": "https://www.orthodb.org/?gene=F1SFF0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11866", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11866", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11866:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11866:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-391908", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-391908", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003353536", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353536", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFF0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFF0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNTSSESRRRESCDTREWLLSGESPAISSVMFSAGVLGNLIALALLARRWRGDLGRGAGHGNSISLFHVLVTELVFTDLLGTCFISPVVLASYARNQTLVALAPQRRVCTYFAFSMTFFSLATMLMLFAMALERYLAIGHPYFYQRWITHRGGLAVLPAIYTVSLLFCSLPLLDHQDYVQYCPGTWCFIGHEQSTYLRLYATLLLLLIIAVLACNFSVILNLIRMHRRGRNSRCGPSLGSSRAGPGSRRRGERVSVAEEMDHLILLAIMTITFAVCSLPFTIFAYMNETFSREEKWDLQALRFLSINSIIDPWVFAILRPPVLRLMRSVLCCRASLRTQDATLTSCSTHSNASKSADL", "length": 359, "header": "tr|F1SFF0-1|F1SFF0_PIG Isoform 1 of Prostaglandin E2 receptor EP2 subtype OS=Sus scrofa OX=9823 GN=PTGER2 PE=3 SV=1 CANONICAL=F1SFF0-1" }, "isoforms": [ { "isoform_ac": "F1SFF0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFF0/entry#F1SFF0-1", "sequence": { "sequence": "MGNTSSESRRRESCDTREWLLSGESPAISSVMFSAGVLGNLIALALLARRWRGDLGRGAGHGNSISLFHVLVTELVFTDLLGTCFISPVVLASYARNQTLVALAPQRRVCTYFAFSMTFFSLATMLMLFAMALERYLAIGHPYFYQRWITHRGGLAVLPAIYTVSLLFCSLPLLDHQDYVQYCPGTWCFIGHEQSTYLRLYATLLLLLIIAVLACNFSVILNLIRMHRRGRNSRCGPSLGSSRAGPGSRRRGERVSVAEEMDHLILLAIMTITFAVCSLPFTIFAYMNETFSREEKWDLQALRFLSINSIIDPWVFAILRPPVLRLMRSVLCCRASLRTQDATLTSCSTHSNASKSADL", "length": 359, "header": "tr|F1SFF0-1|F1SFF0_PIG Isoform 1 of Prostaglandin E2 receptor EP2 subtype OS=Sus scrofa OX=9823 GN=PTGER2 PE=3 SV=1 CANONICAL=F1SFF0-1" }, "locus": { "chromosome": "1", "start_pos": 182006481, "end_pos": 181995454, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025684.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025684.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027548.1", "url": "https://www.ensembl.org/id/ENSSSCP00000027548.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100127164", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100127164", "resource": "KEGG Pathway" }, { "id": "R-SSC-391908", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-391908", "resource": "Reactome", "description": "Prostanoid ligand receptors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" } ], "pmid": "" }, { "name": "adenylate cyclase-activating G protein-coupled receptor signaling pathway", "id": "GO:0007189", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007189", "evidence": [ { "database": "UniProtKB", "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" } ], "pmid": "" }, { "name": "positive regulation of cytosolic calcium ion concentration", "id": "GO:0007204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007204", "evidence": [ { "database": "UniProtKB", "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" } ], "pmid": "" }, { "name": "cellular response to prostaglandin E stimulus", "id": "GO:0071380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071380", "evidence": [ { "database": "UniProtKB", "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "prostaglandin E receptor activity", "id": "GO:0004957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004957", "evidence": [ { "database": "UniProtKB", "id": "F1SFF0", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFF0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 359, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFF0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFF0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFF0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFF0" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 316, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 216, "end_pos": 218 }, { "start_pos": 288, "end_pos": 290 }, { "start_pos": 352, "end_pos": 354 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFL5-1", "uniprot_ac": "F1SFL5", "uniprot_id": "F1SFL5_PIG", "mass": { "chemical_mass": 34145.0, "monoisotopic_mass": 34145.0 }, "refseq": { "ac": "NP_001422085", "name": "histone-lysine N-methyltransferase SETMAR", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422085" }, "gene_names": [ { "name": "LOC100514009", "type": "recommended", "evidence": [ { "id": "F1SFL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ] }, { "name": "LOC100514009", "type": "synonym", "evidence": [ { "id": "NP_001422085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422085" } ] }, { "name": "SETMAR", "type": "synonym", "evidence": [ { "id": "NP_001422085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422085" } ] } ], "protein_names": [ { "name": "Histone-lysine N-methyltransferase SETMAR", "type": "recommended", "evidence": [ { "id": "F1SFL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL5/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.357", "type": "synonym", "evidence": [ { "id": "F1SFL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL5/entry#names_and_taxonomy" } ] }, { "name": "SET domain and mariner transposase fusion", "type": "synonym", "evidence": [ { "id": "NP_001422085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422085" } ] }, { "name": "histone-lysine N-methyltransferase SETMAR", "type": "synonym", "evidence": [ { "id": "NP_001422085", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422085" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100514009", "url": "https://www.uniprot.org/uniprotkb/F1SFL5", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000011531", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011531", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10544", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10544", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514009", "url": "https://www.ncbi.nlm.nih.gov/gene/100514009", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003616", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003616", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050973", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050973", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514009", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514009", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFL5", "url": "https://www.orthodb.org/?gene=F1SFL5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46223", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46223", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46223:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46223:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00856", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00856", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001422085", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001422085", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "60308", "url": "https://www.rhea-db.org/rhea/60308", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFL5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAESGKVPEALMERPDVARGLENLPVSVWPSGAGPEPFQYTPDHVAGPGADIDPSQITFPGCICLKTPCLPGTCSCLRREKNYDDNLCLRDIGSGAKCAEPVFECNALCRCSDHCRNRVVQRGLHFHLQVFKTDHKGWGLRTLDFIPKGRFVCEYAGEVLGVSEVQRRIQLQTIHDSNYIIAIREHVYNGQVIETFVDPAYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDILPGEELSYDYSGRFLNPADSEDKERLDNEKLRKSCYCGAKSCAAFLPYDSSLYCPLEKPNTREEGKV", "length": 306, "header": "tr|F1SFL5-1|F1SFL5_PIG Isoform 1 of Histone-lysine N-methyltransferase SETMAR OS=Sus scrofa OX=9823 GN=LOC100514009 PE=4 SV=3 CANONICAL=F1SFL5-1" }, "isoforms": [ { "isoform_ac": "F1SFL5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFL5/entry#F1SFL5-1", "sequence": { "sequence": "MAESGKVPEALMERPDVARGLENLPVSVWPSGAGPEPFQYTPDHVAGPGADIDPSQITFPGCICLKTPCLPGTCSCLRREKNYDDNLCLRDIGSGAKCAEPVFECNALCRCSDHCRNRVVQRGLHFHLQVFKTDHKGWGLRTLDFIPKGRFVCEYAGEVLGVSEVQRRIQLQTIHDSNYIIAIREHVYNGQVIETFVDPAYIGNIGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDILPGEELSYDYSGRFLNPADSEDKERLDNEKLRKSCYCGAKSCAAFLPYDSSLYCPLEKPNTREEGKV", "length": 306, "header": "tr|F1SFL5-1|F1SFL5_PIG Isoform 1 of Histone-lysine N-methyltransferase SETMAR OS=Sus scrofa OX=9823 GN=LOC100514009 PE=4 SV=3 CANONICAL=F1SFL5-1" }, "locus": { "chromosome": "13", "start_pos": 60925339, "end_pos": 60916251, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012621.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012621.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012291.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012291.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514009", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514009", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ], "pmid": "" }, { "name": "double-stranded DNA binding", "id": "GO:0003690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003690", "evidence": [ { "database": "UniProtKB", "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ], "pmid": "" }, { "name": "histone methyltransferase activity", "id": "GO:0042054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042054", "evidence": [ { "database": "UniProtKB", "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ], "pmid": "" }, { "name": "histone H3K36 dimethyltransferase activity", "id": "GO:0140954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140954", "evidence": [ { "database": "UniProtKB", "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "F1SFL5", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "60308", "name": "", "equation": "L-lysyl(36)-[histone H3] + 2 S-adenosyl-L-methionine = N(6),N(6)-dimethyl-L-lysyl(36)-[histone H3] + 2 S-adenosyl-L-homocysteine + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "60308", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60308" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" }, { "id": "PS50868", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50868" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Post-SET", "eco_id": "ECO_0000259", "start_pos": 270, "end_pos": 286, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" }, { "id": "PS50867", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50867" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pre-SET", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 123, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL5" }, { "id": "PS50280", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50280" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SET", "eco_id": "ECO_0000259", "start_pos": 126, "end_pos": 250, "start_aa": "Phe", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 210, "end_pos": 212 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFL7-1", "uniprot_ac": "F1SFL7", "uniprot_id": "F1SFL7_PIG", "mass": { "chemical_mass": 49954.0, "monoisotopic_mass": 49954.0 }, "refseq": { "ac": "XP_020924926", "name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924926" }, "gene_names": [ { "name": "TRNT1", "type": "recommended", "evidence": [ { "id": "F1SFL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ] }, { "name": "TRNT1", "type": "synonym", "evidence": [ { "id": "XP_020924926", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924926" } ] } ], "protein_names": [ { "name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SFL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL7/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.72", "type": "synonym", "evidence": [ { "id": "F1SFL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL7/entry#names_and_taxonomy" } ] }, { "name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_020924926", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924926" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRNT1", "url": "https://www.uniprot.org/uniprotkb/F1SFL7", "locus": { "chromosome": "13", "start_pos": 59735400, "end_pos": 59710995, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011529", "url": "https://www.ensembl.org/id/ENSSSCG00000011529" } ] } } ], "crossref": [ { "id": "F1SFL7", "url": "https://alphafold.ebi.ac.uk/entry/F1SFL7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011529", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011529", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05398", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05398", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153838", "url": "https://www.ncbi.nlm.nih.gov/gene/100153838", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002646", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002646", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050264", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050264", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153838", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153838", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NLCPKPM", "url": "https://omabrowser.org/oma/group/NLCPKPM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFL7", "url": "https://www.orthodb.org/?gene=F1SFL7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46173:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46173:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01743", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01743", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12627", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12627", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020924926", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924926", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "14433", "url": "https://www.rhea-db.org/rhea/14433", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "76235", "url": "https://www.rhea-db.org/rhea/76235", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRCLDPWRRPLLSCSWSRLCLVKQYLFTMKLQSPEFQSLFTEGLKTLTELFVKENHELRIAGGAVRDLLSGVKPQDVDFATTATPVQMKELFQSVGIRMINNKGEKHGTITARLHEENFEITTLRVDVATDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGQAKQRIQEDYLRILRYFRFYGKIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILTGNHVNHLIHLMYDLDVAPYIGLPANASLEEFNKVSKNVEGFSPKPMTLLTSLFRVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKAKDSSEPLKPYQDFIIDCRESDATARVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT", "length": 434, "header": "tr|F1SFL7-1|F1SFL7_PIG Isoform 1 of CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Sus scrofa OX=9823 GN=TRNT1 PE=1 SV=1 CANONICAL=F1SFL7-1" }, "isoforms": [ { "isoform_ac": "F1SFL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFL7/entry#F1SFL7-1", "sequence": { "sequence": "MLRCLDPWRRPLLSCSWSRLCLVKQYLFTMKLQSPEFQSLFTEGLKTLTELFVKENHELRIAGGAVRDLLSGVKPQDVDFATTATPVQMKELFQSVGIRMINNKGEKHGTITARLHEENFEITTLRVDVATDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGQAKQRIQEDYLRILRYFRFYGKIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILTGNHVNHLIHLMYDLDVAPYIGLPANASLEEFNKVSKNVEGFSPKPMTLLTSLFRVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKAKDSSEPLKPYQDFIIDCRESDATARVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT", "length": 434, "header": "tr|F1SFL7-1|F1SFL7_PIG Isoform 1 of CCA tRNA nucleotidyltransferase 1, mitochondrial OS=Sus scrofa OX=9823 GN=TRNT1 PE=1 SV=1 CANONICAL=F1SFL7-1" }, "locus": { "chromosome": "13", "start_pos": 59731999, "end_pos": 59712115, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012619.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012619.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012289.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012289.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153838", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153838", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5P668-1", "protein_name": "tRNA nucleotidyl transferase 1", "gene_name": "TRNT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWAEVLLLPCRARLLPPLRLRHRAARAMRLQSPQFQALFTPGLRSVAELFEKKNYELRIAGGAVRDLLSGMTPQDVDFATTATPEQMKDMFTSAGVRLINNKGEKHGTITARLHEQNFEITTLRIDIVTDGRHAEVEFTTDWEKDAERRDLTVNSMFLGLDGMLYDFFNGYEDLKNKKIRFVGKASARIQEDYLRILRYFRFYGRIAEKPGDHEPSTLQAIKDNAKGLAGISGERIWVELKKILIGNHVNHLVRLLYELDVAQYIGLPVNGSLDELDRVSKNTESLCPKPMTVLTSLFRGKDDVTNLDLRLKISKEEKNLGFFLLKHREELTKATGPEPLKPYQDFIMDSRETNTISKILELLKYQGEEQLLKEMQQWTVPTFPVSGHDLRKMGITCGKEIGSALQQLREEWKKSGYRMDKEELLSCMQKV", "length": 431 }, "evidence": [ { "id": "F1SFL7", "url": "https://omabrowser.org/oma/group/F1SFL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F6NXI9-1", "protein_name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "gene_name": "trnt1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MWAKLFLRPSFVNRVHLTWSCRALLTMQLKTKEFESLFTDGLVGLAEIFQKNQFELRIAGGAVRDLLSGKRPEDVDFATTATPEEMKSMFQTAGVRMINNKGEKHGTITARLHEENFEVTTLRVDVQTDGRHAEVEFTTDWQKDAERRDLTINSMFLGLDGTLYDYFQGYEDLKNRKVRFVGSASLRIQEDYLRILRYFRFYGRVAAEPGQHEPETLEAIRENARGLAGISGERIWVELKKMLVGNHAGHLLELVYELGLAQYTGLPADGDVEEMKQVWQRAHVSSPKPMTVLAALFRKQADVENLDQRLKVSREEKNLGLFLVKYRRDLVKGHDEHDTMKPYTDFITDSREPDTQSKVLELLKYQGENKLLDELRRWSIPRFPVSGHDLRKLGYTSGKEIGTILQELRDMWKKSRYQMSKDELLSTLSQS", "length": 431 }, "evidence": [ { "id": "F1SFL7", "url": "https://omabrowser.org/oma/group/F1SFL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8K1J6-1", "protein_name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "gene_name": "Trnt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQSVLYPWHRQVLRCSWSRLCLLKRYLFTMKLQSPEFQSLFTEGLKSLTELFAKENHELRIAGGAVRDLLNGVKPQDVDFATTATPTQMKEMFQSAGIRMINNKGEKHGTITARLHEENFEVTTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYADLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDRPGDHDHETLEAIAENAKGLAGISGERIWVELKKILTGDHVNHLIHLIYDLGVAPHIGLPANANLEEFNKVSKNVEGFSPKPMTLLASLFKVQDDVTKLDLRLKISKEEKNLGLFIVKNRKDLIKATDSSEPLKPYQDFVIDSREPDATARVCELLKYQGEHGLLKEMQQWSVPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYRMEKDELLSYIKKT", "length": 434 }, "evidence": [ { "id": "F1SFL7", "url": "https://omabrowser.org/oma/group/F1SFL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96Q11-1", "protein_name": "CCA tRNA nucleotidyltransferase 1, mitochondrial", "gene_name": "TRNT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRCLYHWHRPVLNRRWSRLCLPKQYLFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFATTATPTQMKEMFQSAGIRMINNRGEKHGTITARLHEENFEITTLRIDVTTDGRHAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFNGYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNVDGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSREPDATTRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKT", "length": 434 }, "evidence": [ { "id": "F1SFL7", "url": "https://omabrowser.org/oma/group/F1SFL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "rescue of stalled ribosome", "id": "GO:0072344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072344", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "tRNA 3'-terminal CCA addition", "id": "GO:0001680", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001680", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "mitochondrial tRNA 3'-end processing", "id": "GO:1990180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990180", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "tRNA surveillance", "id": "GO:0106354", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106354", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "CCA tRNA nucleotidyltransferase activity", "id": "GO:0004810", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004810", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "CCACCA tRNA nucleotidyltransferase activity", "id": "GO:0160016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160016", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SFL7", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14433", "name": "", "equation": "a tRNA precursor + 2 CTP + ATP = a tRNA with a 3' CCA end + 3 diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14433", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14433" } ] }, { "id": "76235", "name": "", "equation": "a tRNA with a 3' CCA end + 2 CTP + ATP = a tRNA with a 3' CCACCA end + 3 diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "76235", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/76235" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFL7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 434, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFL7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFL7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" }, { "id": "PF01743", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01743" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Poly A polymerase head", "eco_id": "ECO_0000259", "start_pos": 59, "end_pos": 182, "start_aa": "Leu", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFL7" }, { "id": "PF12627", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12627" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "tRNA nucleotidyltransferase/poly(A) polymerase RNA and SrmB- binding", "eco_id": "ECO_0000259", "start_pos": 216, "end_pos": 267, "start_aa": "Asp", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 272, "end_pos": 274 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFM8-1", "uniprot_ac": "F1SFM8", "uniprot_id": "F1SFM8_PIG", "mass": { "chemical_mass": 51020.0, "monoisotopic_mass": 51020.0 }, "refseq": { "ac": "XP_005669783", "name": "glucoside xylosyltransferase 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669783" }, "gene_names": [ { "name": "GXYLT2", "type": "recommended", "evidence": [ { "id": "F1SFM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFM8" } ] }, { "name": "GXYLT2", "type": "synonym", "evidence": [ { "id": "XP_005669783", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669783" } ] } ], "protein_names": [ { "name": "UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase", "type": "recommended", "evidence": [ { "id": "F1SFM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFM8/entry#names_and_taxonomy" } ] }, { "name": "2.4.2.42", "type": "synonym", "evidence": [ { "id": "F1SFM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFM8/entry#names_and_taxonomy" } ] }, { "name": "glucoside xylosyltransferase 2", "type": "synonym", "evidence": [ { "id": "XP_005669783", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669783" } ] } ], "function": [ { "annotation": "Glycosyltransferase which elongates the O-linked glucose attached to EGF-like repeats in the extracellular domain of Notch proteins by catalyzing the addition of xylose.", "evidence": [ { "database": "UniProtKB", "id": "F1SFM8", "url": "https://www.uniprot.org/uniprotkb/F1SFM8#function" }, { "database": "UniProtKB", "id": "ARBA00037301", "url": "https://www.uniprot.org/uniprotkb/ARBA00037301#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFM8", "url": "https://www.uniprot.org/uniprotkb/F1SFM8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GXYLT2", "url": "https://www.uniprot.org/uniprotkb/F1SFM8", "locus": { "chromosome": "13", "start_pos": 54302215, "end_pos": 54205383, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011519", "url": "https://www.ensembl.org/id/ENSSSCG00000011519" } ] } } ], "crossref": [ { "id": "F1SFM8", "url": "https://alphafold.ebi.ac.uk/entry/F1SFM8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011519", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011519", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06430", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06430", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511227", "url": "https://www.ncbi.nlm.nih.gov/gene/100511227", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002495", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002495", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511227", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511227", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFM8", "url": "https://www.orthodb.org/?gene=F1SFM8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46012:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46012:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005669783", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669783", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "56064", "url": "https://www.rhea-db.org/rhea/56064", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFM8", "url": "https://www.uniprot.org/uniprotkb/F1SFM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFM8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFM8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLRSKAAALLLLALAALLLALLSLRTGRAAPPAPLARPASVLPRRPVPAPARLPGLGALPGAGQGPRRRSPPRLRPRAGRRGAASLKKLVRRPVESRSFQVVLPHELWIHLAVVACGNRLEETLVMLKSAVLFSHRKMQFHIFTEESLKPEFDKQLRQWPDSYTKKFEHRIYPITFSVGNPQEWKKLFKPCAAQRLFLPVILKDVDSLLYVDTDVLFLRPVDDIWKLLRQFNSTQLAAMAPEHEIPKIGWYSRFARHPFYGSAGVNSGVMLMNLTRIRSAQFKNSMIPTGLAWEDMLYPLYQKYKNAITWGDQDLLNIIFYFNPECLYVFPCQWNYRPDHCMYGSNCREAEQEGVSVLHGNRGVYHDEKQPTFKALYEAIRDFPFQDNLFQSMYYPLQLKFLETVHTLCGRIPQVFLKQIEKTMKRAYEKHVIIRVGPNQMH", "length": 443, "header": "tr|F1SFM8-1|F1SFM8_PIG Isoform 1 of UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase OS=Sus scrofa OX=9823 GN=GXYLT2 PE=3 SV=3 CANONICAL=F1SFM8-1" }, "isoforms": [ { "isoform_ac": "F1SFM8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFM8/entry#F1SFM8-1", "sequence": { "sequence": "MKLRSKAAALLLLALAALLLALLSLRTGRAAPPAPLARPASVLPRRPVPAPARLPGLGALPGAGQGPRRRSPPRLRPRAGRRGAASLKKLVRRPVESRSFQVVLPHELWIHLAVVACGNRLEETLVMLKSAVLFSHRKMQFHIFTEESLKPEFDKQLRQWPDSYTKKFEHRIYPITFSVGNPQEWKKLFKPCAAQRLFLPVILKDVDSLLYVDTDVLFLRPVDDIWKLLRQFNSTQLAAMAPEHEIPKIGWYSRFARHPFYGSAGVNSGVMLMNLTRIRSAQFKNSMIPTGLAWEDMLYPLYQKYKNAITWGDQDLLNIIFYFNPECLYVFPCQWNYRPDHCMYGSNCREAEQEGVSVLHGNRGVYHDEKQPTFKALYEAIRDFPFQDNLFQSMYYPLQLKFLETVHTLCGRIPQVFLKQIEKTMKRAYEKHVIIRVGPNQMH", "length": 443, "header": "tr|F1SFM8-1|F1SFM8_PIG Isoform 1 of UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase OS=Sus scrofa OX=9823 GN=GXYLT2 PE=3 SV=3 CANONICAL=F1SFM8-1" }, "locus": { "chromosome": "13", "start_pos": 54297363, "end_pos": 54205582, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012607.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012607.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012278.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012278.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFM8", "url": "https://www.uniprot.org/uniprotkb/F1SFM8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511227", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511227", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SFM8", "url": "https://www.uniprot.org/uniprotkb/F1SFM8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein O-linked glycosylation via N-acetyl-galactosamine", "id": "GO:0016266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016266", "evidence": [ { "database": "UniProtKB", "id": "F1SFM8", "url": "https://www.uniprot.org/uniprotkb/F1SFM8" } ], "pmid": "" }, { "name": "protein O-linked glycosylation via glucose", "id": "GO:0180059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0180059", "evidence": [ { "database": "UniProtKB", "id": "F1SFM8", "url": "https://www.uniprot.org/uniprotkb/F1SFM8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "UDP-xylosyltransferase activity", "id": "GO:0035252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035252", "evidence": [ { "database": "UniProtKB", "id": "F1SFM8", "url": "https://www.uniprot.org/uniprotkb/F1SFM8" } ], "pmid": "" }, { "name": "UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase activity", "id": "GO:0140563", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140563", "evidence": [ { "database": "UniProtKB", "id": "F1SFM8", "url": "https://www.uniprot.org/uniprotkb/F1SFM8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "56064", "name": "", "equation": "3-O-(beta-D-glucosyl)-L-seryl-[EGF-like domain protein] + UDP-alpha-D-xylose = 3-O-[alpha-D-xylosyl-(1->3)-beta-D-glucosyl]-L-seryl-[EGF-like domain protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "56064", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/56064" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFM8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 443, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFM8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFM8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G01629YL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26821XH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41179DF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61224OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82156OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86535WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98229SM", "type": "Other", "subtype": "Other" } ], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 233, "end_pos": 235 }, { "start_pos": 274, "end_pos": 276 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFN0-1", "uniprot_ac": "F1SFN0", "uniprot_id": "F1SFN0_PIG", "mass": { "chemical_mass": 65333.0, "monoisotopic_mass": 65333.0 }, "refseq": { "ac": "XP_003132372", "name": "protein SHQ1 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132372" }, "gene_names": [ { "name": "SHQ1", "type": "recommended", "evidence": [ { "id": "F1SFN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFN0" } ] }, { "name": "SHQ1", "type": "synonym", "evidence": [ { "id": "XP_003132372", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132372" } ] } ], "protein_names": [ { "name": "Protein SHQ1 homolog", "type": "recommended", "evidence": [ { "id": "F1SFN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFN0/entry#names_and_taxonomy" } ] }, { "name": "protein SHQ1 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003132372", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132372" } ] } ], "function": [ { "annotation": "Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs), including telomerase, probably through the stabilization of DKC1, from the time of its synthesis until its association with NOP10, NHP2, and NAF1 at the nascent H/ACA RNA.", "evidence": [ { "database": "UniProtKB", "id": "F1SFN0", "url": "https://www.uniprot.org/uniprotkb/F1SFN0#function" }, { "database": "UniProtKB", "id": "ARBA00056843", "url": "https://www.uniprot.org/uniprotkb/ARBA00056843#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFN0", "url": "https://www.uniprot.org/uniprotkb/F1SFN0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SHQ1", "url": "https://www.uniprot.org/uniprotkb/F1SFN0", "locus": { "chromosome": "13", "start_pos": 54071659, "end_pos": 54180750, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011518", "url": "https://www.ensembl.org/id/ENSSSCG00000011518" } ] } } ], "crossref": [ { "id": "F1SFN0", "url": "https://alphafold.ebi.ac.uk/entry/F1SFN0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011518", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011518", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511045", "url": "https://www.ncbi.nlm.nih.gov/gene/100511045", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511045", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511045", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HNIESAW", "url": "https://omabrowser.org/oma/group/HNIESAW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFN0", "url": "https://www.orthodb.org/?gene=F1SFN0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12967", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12967", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12967:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12967:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04925", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04925", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21413", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21413", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-171319", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171319", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003132372", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132372", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFN0", "url": "https://www.uniprot.org/uniprotkb/F1SFN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFN0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFN0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGLDFKFYAKPYFLRLTLPGRIVENGREQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRTAKLLVEEIGVSEVSEEGVEDDDEEFDWEIEQSPYEEVPESALNPECRYGFGNLRSGVFQRLQDELSEVIDIKDPDFTPAAERRQKRLAAELAKFDPDHYLADFFEDEAVKQVLEYIPWWTDLYSKIMPSSKRNQEPEDFTALVSFSEEEKYQLRNFVNKSYLLDKRAHRQVYYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFETWSNVHEILVSFGRRVLCYPLHRHFKLVMEAYRDTIKILQLGKSAVLKCLLDIHKIFQENDPAYILNDLYISDYCVWIQKAKSKKLSALADALREASLTKAQLGLELEELEAAALLVQEEETASTAGAQSVSGQQEAASSSDTSDSEESDSTFSSETDDSDSEEEEPRDSESGAVNSLLGPFVENSHAALLLDNGLICRDKAPPKSDVCQGQLPAPSLAPGASGPLIQELGEQLETTVYISEPEGSTAGKQGSIQEKDGQQTLED", "length": 579, "header": "tr|F1SFN0-1|F1SFN0_PIG Isoform 1 of Protein SHQ1 homolog OS=Sus scrofa OX=9823 GN=SHQ1 PE=3 SV=2 CANONICAL=F1SFN0-1" }, "isoforms": [ { "isoform_ac": "F1SFN0-1", "url": "https://www.uniprot.org/uniprotkb/F1SFN0/entry#F1SFN0-1", "sequence": { "sequence": "MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGLDFKFYAKPYFLRLTLPGRIVENGREQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRTAKLLVEEIGVSEVSEEGVEDDDEEFDWEIEQSPYEEVPESALNPECRYGFGNLRSGVFQRLQDELSEVIDIKDPDFTPAAERRQKRLAAELAKFDPDHYLADFFEDEAVKQVLEYIPWWTDLYSKIMPSSKRNQEPEDFTALVSFSEEEKYQLRNFVNKSYLLDKRAHRQVYYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFETWSNVHEILVSFGRRVLCYPLHRHFKLVMEAYRDTIKILQLGKSAVLKCLLDIHKIFQENDPAYILNDLYISDYCVWIQKAKSKKLSALADALREASLTKAQLGLELEELEAAALLVQEEETASTAGAQSVSGQQEAASSSDTSDSEESDSTFSSETDDSDSEEEEPRDSESGAVNSLLGPFVENSHAALLLDNGLICRDKAPPKSDVCQGQLPAPSLAPGASGPLIQELGEQLETTVYISEPEGSTAGKQGSIQEKDGQQTLED", "length": 579, "header": "tr|F1SFN0-1|F1SFN0_PIG Isoform 1 of Protein SHQ1 homolog OS=Sus scrofa OX=9823 GN=SHQ1 PE=3 SV=2 CANONICAL=F1SFN0-1" }, "locus": { "chromosome": "13", "start_pos": 54180622, "end_pos": 54073888, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012605.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012605.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012276.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012276.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFN0", "url": "https://www.uniprot.org/uniprotkb/F1SFN0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511045", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511045", "resource": "KEGG Pathway" }, { "id": "R-SSC-171319", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171319", "resource": "Reactome", "description": "Telomere Extension By Telomerase" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZCP4-1", "protein_name": "Protein SHQ1 homolog", "gene_name": "SHQ1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MITPDFELSQDPDFLTVIIRVPYVRVSELDLFFEGEDFKFYAKPYFLRLTLPGRVVEDGREKASYDTDKGVFTIQLPKESPGQYFEGLDMLTSLLAPKKSRTAKPLVEEIGVPAEEEEEEEEEFDWEIEQTLYKEAAEGPVPLQCYYGFGNLRSGVFQRLQDELSDVIDVKDPDQTPTDERKMKRLEAEAAKFDPDHYLADFFEDEAIQHILKYKPWWVDAHKKMMALQGESQNHGSHTLVIFSDEEREQLRKFTNKSYLLDKTSRHLVYLGLIDILLAYCYEIRVNEGDKNVESSWNVRKLSATLCWLECFTSIHDVLVSFGRRVVCYPLYRHFGLVTRAFNDTVMILQLGRAAVLKCLLDIHRIFRESDPAYILNDLFITDYCIWIQKIKSKKLAALSESLQKTTLAKSHLGFELEELEAAAVLVLEEESKLTAAGMVSRQQLPSSESETSDSEESSSTSSSETEGSDSNERESSTAEDGKINPLQGMLQEERTAPLIDCNGLRQGTNALTFEASDEKSKASLQSTSVPGKLIEELEKQMHTAMRLSEQPEGLASASGFALREQEENHVSEPVRFSKVTTGKGDFLEVPSKTNPLLFLCSTNEDED", "length": 608 }, "evidence": [ { "id": "F1SFN0", "url": "https://omabrowser.org/oma/group/F1SFN0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A1L1R0-1", "protein_name": "Protein SHQ1 homolog", "gene_name": "shq1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MITPAFELSQDADFLIVVIRVPYTRTSDFDIYIQEEEFKFYAKPYFLRLTLPGRIVEDGREKASFDIDKGLFTLHVPKETAGQHFEGLEMLTSLLAPKGSRSAKPLVEDSEACGEGCEEEDEEFDWQIEQEVYTEAPADTLKEYHKYGFGNLRSGVFSRLQEELNEVIDMKDPDNTNAELRRRNRLDTETAVFCADHYLVNLYEDKEEIRNLLKFKPWWRKLNPDPSAGYDISMTFTEEEREQMRRFTNRSYLLDKKARFHVWLGLVDIILAYVYDVRTTEGEHNVESAWTIRKLSGTLSWLETYHSVQDVLVSFGRRTYCYPLYRHFSLVTLAVKDAACIFQAGKACILKCLLAIHKIFRENDPAYILNDLYITDYCIWIQRVKSKHVLALAEPLNNAKLQKNHLELELEIIEQAAELAVKEEEEKDTESDTDDSSSSSGDSDDEDDSDEECPEKAAEKKQTAFKAHAEAVTEAFCVELQRGDGRLIEELGKRLEEELTIEEDVPQERRSASEGEGERRREHYHPHAAESERDTTKAATGKELLDVCLQRKPLRILNTEELDSDDDDDDDDDGDLRITVVDERG", "length": 585 }, "evidence": [ { "id": "F1SFN0", "url": "https://omabrowser.org/oma/group/F1SFN0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3GS48-1", "protein_name": "Protein SHQ1 homolog", "gene_name": "Shq1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLTPAFELSQDSEFLTVAIRIPHARASEFDVYFEGVDFKFYAKPYFLRLTLPGRIVENGSEQGTYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRSAKPLVEEIGASGVSEEGADDEDSEFDWEIEQTPYEEVSESALLSQCHYGFGNLRAGVVQRLQDELSEVIDIKDPDFTPATERRQKRLAAELAKFDSDHYLADFFEDEAVEQILKYSPWWNDAHAEMMASLGKSQEKGDDAALVSFSEEEKYQLRKFVNKSYLLDKTAHRQVYYSLVDILLAYCYEIRVTEGEHNVESAWTIRKLSPTLCWFETWTDVHEILVSFGRRVLCYPLYRHFKLVMKAYRDTIKILQLGKSAVLKCLLDVHKIFQENDPAFILNDLYISDYCVWIQKAKSKKLAALAEAMKAVSLSKAQLGLELQELEAAALLVQEEETAEKAAQCNPMQPAPGSSPETSDSDSTTSSDTEDSASEQEELVGMQPSLLTSLQVPLLEEDSSALLIKESGLCRNVAGQECEVSQGQTRAPLIEEVGDELRTMLQISTPPDVSAGSHSGMQDGEERGQVPHD", "length": 567 }, "evidence": [ { "id": "F1SFN0", "url": "https://omabrowser.org/oma/group/F1SFN0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P40486-1", "protein_name": "Protein SHQ1", "gene_name": "SHQ1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MITPRFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLSPYYLRLRFPHELIDDERSTAQYDSKDECINVKVAKLNKNEYFEDLDLPTKLLARQGDLAGADALTENTDAKKTQKPLIQEVETDGVSNNIKDDVKTIGQMGEGFNWEIEQKMDSSTNNGILKTKYGFDNLYDTVISVSTSNGNDINELDDPEHTDANDRVIERLRKENLKFDPEYYVSEYMTHKYGNEEDLEINGIKELLKFTPSIVKQYLQWYKDSTNPNLVMPIEFTDEEQKQMQDNLPKKSYLVEDIKPLYVTILSVLFSYVFEQIENEGTHTTESAWTMGKLCPQISFLDQQLKQVNELQDGMKEISKVNKDSSLIKIAIITGIRRALSYPLHRNYDLAMKAWTFVYYILRGGKRLVIRALLDIHETFRFHDVYYVYDKVLLDDLTAWFISQGSENVIRSLALEMRKEQESLSKQDIEFECIASFNEQTGEPEWETLNIREMEILAESEYREQQQNPQ", "length": 507 }, "evidence": [ { "id": "F1SFN0", "url": "https://omabrowser.org/oma/group/F1SFN0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3MHH1-1", "protein_name": "Protein SHQ1 homolog", "gene_name": "SHQ1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLTPAFDLSQDPDFLTVAIRVPYARVSEFDVYFEGVDFKFYAKPYFLRLTLPGRIVENGNEQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRTAKPLVEEIGASEVSEGGVEDDDDEFDWEIEQSPYEEVPESALNPNCRYGFGNLRSGVFQRLQDELSDVIDIKDPDFTSAAERRQKRLAAELAKFDPDHYLADFMEDEAVKQVLEYNPWWSDLYSEMMTSLGKSQEEENLAALVSFSEEEKYQLRKFVNKSYLLDKKAHRQVYYSLIDILLAYCYETRVTEGERNVESAWNIRKLSPTLCWFETWTNVHEILVSFGRRVLCYPLYRHFKLVMKTYRDTIKILQLGKSAVLKCLLDIHKIFQENDPAYILNDLYISDYCVWIQKAKSKKLAALAEALKKASLTKAQLGLELEELEAAAFLVQEEEATSKAGVHSTSRQQTPSSSSETSGSEESEGSASLETEESDSEQEEPGGGESETGHSLLGPFVEESSMALLLNDGGMCRSTTFLGSDGGRGQPLASPGAPIAFGPLIQELGEQLETSVQISEPKDSAAGQQDSVLERESRQTPED", "length": 579 }, "evidence": [ { "id": "F1SFN0", "url": "https://omabrowser.org/oma/group/F1SFN0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q55EC4-1", "protein_name": "CS domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIIPKFSVDQNDEFIIVVAITPYIKASEADFYLLENQFKFYCKPYFLRLTFSHNIVENGKEKASFNVNTQEFTFYLPKEINGQKFNDLDLITKLLEKKSTTNTSKIQVLNGESNQDDQDEDEEGEDYEDEEWEFEQIVEPEPSLDELKNKIKYGFNDGYSDFFQGLQQDISDIIDIPIIDSITKQERTKVRTEFEDLKFDPERFMENHFFNDDIKELLHYKCYWEDLIEKKLKLKNEKNQKQSSEQESNEIINKKEEEKQEEKQEEKVEEIKEKVEEIKQIDPSNLEDYDEGNDEVTNETTIESNEISDELLEKINSTLSKKISIVNDESDIKNSLIEKEDSTTTTTTTTTTTTTTTKSTTTNNNKYSKKLITFSDEEKDIMKNLPNKEYMISNEKSILLGLVDIIYSYAYNERVNMGYENIESAWNICKLSGTLSCLDNFYNLSSVLECCFKRSLTFPLYRSWLLSERVLRDTKQIFQLGKRSLLKCLLDIKKKLESSEFKYYLNRLYIDDYCIWLQHASKKKLKSLRNKLSEYEMKKSMISWPLEEYEKLVEEEGMVFGEEEEDEDNKEEQFEYENQDESD", "length": 583 }, "evidence": [ { "id": "F1SFN0", "url": "https://omabrowser.org/oma/group/F1SFN0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6PI26-1", "protein_name": "Protein SHQ1 homolog", "gene_name": "SHQ1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTPAFDLSQDPDFLTIAIRVPYARVSEFDVYFEGSDFKFYAKPYFLRLTLPGRIVENGSEQGSYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRTAKPLVEEIGASEIPEEVVDDEEFDWEIEQTPCEEVSESALNPQCHYGFGNLRSGVLQRLQDELSDVIDIKDPDFTPAAERRQKRLAAELAKFDPDHYLADFFEDEAIEQILKYNPWWTDKYSKMMAFLEKSQEQENHATLVSFSEEEKYQLRKFVNKSYLLDKRACRQVCYSLIDILLAYCYETRVTEGEKNVESAWNIRKLSPTLCWFETWTNVHDIMVSFGRRVLCYPLYRHFKLVMKAYRDTIKILQLGKSAVLKCLLDIHKIFQENDPAYILNDLYISDYCVWIQKVKSKKLAALAEALKEVSLTKAQLGLELEELEAAALLVQEEETALKAAHSVSGQQTLCSSSEASDSEDSDSSVSSGNEDSGSDSEQDELKDSPSETVSSLQGPFLEESSAFLIVDGGVRRNTAIQESDASQGKPLASSWPLGVSGPLIEELGEQLKTTVQVSEPKGTTAVNRSNIQERDGCQTPNN", "length": 577 }, "evidence": [ { "id": "F1SFN0", "url": "https://omabrowser.org/oma/group/F1SFN0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMX5-1", "protein_name": "Protein SHQ1 homolog", "gene_name": "Shq1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLTPAFELTQDCDFLTVAIRVPHARASEFDVYFEGVDFKFYAKPYFLRLTLPGRIVENGSEQGTYDADKGIFTIRLPKETPGQHFEGLNMLTALLAPRKSRSAKPLVEEIGASGVAEEGADDEDEEFDWEIEQTPYEEVSESTLQSQCHYGFGNLRAGVVQRLQDELSEVIDIKDPDFTPVTERRQKRLAAELAKFDPDHYLADFFEDEAVEQILKYSPWWNDAHAEMVASLGKNQEQGDSAALVSFSEEEKYQLRKFVNKSYLLDKTAHRQVYYGLVDILLAYCYEVRVTEGEHSVESAWTIRKLSPTLCWFETWTDVHEILVSFGRRVLCYPLYRHFKLVLKAYRDTIKILQLGKSAVLKCLLDVHKVFQENDPAYILNDLYISDYCVWIQKAKSKKLAALTEALKAVSLSKAQLGLELPELEAAALLVQEEEGAGRAAQCNPSHQAPHSSPEPSDSDSTSSSGTEDSASEQEEPAGTQPSLLTSLQAPLLEEDSALIIRESGLCRNMASQGCEVSQGQPLASARAPLIEELGDALKMLRVSTPHGVSAGSHGSVEDAEERGQVPCD", "length": 569 }, "evidence": [ { "id": "F1SFN0", "url": "https://omabrowser.org/oma/group/F1SFN0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SFN0", "url": "https://www.uniprot.org/uniprotkb/F1SFN0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SFN0", "url": "https://www.uniprot.org/uniprotkb/F1SFN0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SFN0", "url": "https://www.uniprot.org/uniprotkb/F1SFN0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "F1SFN0", "url": "https://www.uniprot.org/uniprotkb/F1SFN0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "box H/ACA snoRNP assembly", "id": "GO:0000493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000493", "evidence": [ { "database": "UniProtKB", "id": "F1SFN0", "url": "https://www.uniprot.org/uniprotkb/F1SFN0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFN0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 579, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFN0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFN0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFN0" }, { "id": "PS51203", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51203" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CS", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 89, "start_aa": "Met", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 260, "end_pos": 262 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFN7-1", "uniprot_ac": "F1SFN7", "uniprot_id": "F1SFN7_PIG", "mass": { "chemical_mass": 30286.0, "monoisotopic_mass": 30286.0 }, "refseq": { "ac": "XP_003126245", "name": "homeobox protein Hox-C12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126245" }, "gene_names": [ { "name": "HOXC12", "type": "recommended", "evidence": [ { "id": "F1SFN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFN7" } ] }, { "name": "HOXC12", "type": "synonym", "evidence": [ { "id": "XP_003126245", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126245" } ] } ], "protein_names": [ { "name": "Homeobox C12", "type": "synonym", "evidence": [ { "id": "F1SFN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFN7/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein Hox-C12", "type": "synonym", "evidence": [ { "id": "XP_003126245", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126245" } ] } ], "function": [ { "annotation": "Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.", "evidence": [ { "database": "UniProtKB", "id": "F1SFN7", "url": "https://www.uniprot.org/uniprotkb/F1SFN7#function" }, { "database": "UniProtKB", "id": "ARBA00003263", "url": "https://www.uniprot.org/uniprotkb/ARBA00003263#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFN7", "url": "https://www.uniprot.org/uniprotkb/F1SFN7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HOXC12", "url": "https://www.uniprot.org/uniprotkb/F1SFN7", "locus": { "chromosome": "5", "start_pos": 19169795, "end_pos": 19167157, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000281", "url": "https://www.ensembl.org/id/ENSSSCG00000000281" } ] } } ], "crossref": [ { "id": "F1SFN7", "url": "https://alphafold.ebi.ac.uk/entry/F1SFN7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000281", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000281", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518782", "url": "https://www.ncbi.nlm.nih.gov/gene/100518782", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518782", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518782", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SYYREPC", "url": "https://omabrowser.org/oma/group/SYYREPC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFN7", "url": "https://www.orthodb.org/?gene=F1SFN7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46440", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46440", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46440:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46440:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126245", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126245", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFN7", "url": "https://www.uniprot.org/uniprotkb/F1SFN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFN7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFN7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLPWPSAEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDSKGYYREPCAEGGGGGLKREERGRDPGPGVGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLAASGAPWYPIHSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF", "length": 282, "header": "tr|F1SFN7-1|F1SFN7_PIG Isoform 1 of Homeobox C12 OS=Sus scrofa OX=9823 GN=HOXC12 PE=3 SV=2 CANONICAL=F1SFN7-1" }, "isoforms": [ { "isoform_ac": "F1SFN7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFN7/entry#F1SFN7-1", "sequence": { "sequence": "MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLPWPSAEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDSKGYYREPCAEGGGGGLKREERGRDPGPGVGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLAASGAPWYPIHSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF", "length": 282, "header": "tr|F1SFN7-1|F1SFN7_PIG Isoform 1 of Homeobox C12 OS=Sus scrofa OX=9823 GN=HOXC12 PE=3 SV=2 CANONICAL=F1SFN7-1" }, "locus": { "chromosome": "5", "start_pos": 19168791, "end_pos": 19167174, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000302.3", "url": "https://www.ensembl.org/id/ENSSSCT00000000302.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000297.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000297.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFN7", "url": "https://www.uniprot.org/uniprotkb/F1SFN7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518782", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518782", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4ACL4-1", "protein_name": "Homeo box C12", "gene_name": "Hoxc12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLPWPSAEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDSKGYYREPCAEGGGGGLKREERGREPGAGPGAALLQLEPSGPPALGFKYDYPAGGGGGDGNTGPPHDPPSCQSLESDSSSSLLNEGNKGASAGDPGSLVSPLNPGGGLSASGAPWYPIHSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF", "length": 280 }, "evidence": [ { "id": "F1SFN7", "url": "https://omabrowser.org/oma/group/F1SFN7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BEV3-1", "protein_name": "Homeobox C12", "gene_name": "HOXC12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLPWPSAEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDSKGYYREPCAEGGGGLKREERGRDPGPGVGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLAASGAPWYPIHSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF", "length": 281 }, "evidence": [ { "id": "F1SFN7", "url": "https://omabrowser.org/oma/group/F1SFN7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P31275-1", "protein_name": "Homeobox protein Hox-C12", "gene_name": "HOXC12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLSWPSAEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKREERGRDPGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESDSSSSLLNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF", "length": 282 }, "evidence": [ { "id": "F1SFN7", "url": "https://omabrowser.org/oma/group/F1SFN7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K5B8-1", "protein_name": "Homeobox protein Hox-C12", "gene_name": "Hoxc12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPRRDNVCSLPWPSAEPCNGYPQPYLGSPVSLNPPFGRTCELARVEDSKGYYREPCAEGGGGGLKREERGREPGAGPGAALLQLEPSGPPALGFKYDYTASGGGGDGSTGPPHDPPSCQSLESDSSSSLLNEGNKSASAGDPGSLVSPLNPGGGLSASGAPWYPIHSRSRKKRKPYSKLQLAELEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF", "length": 280 }, "evidence": [ { "id": "F1SFN7", "url": "https://omabrowser.org/oma/group/F1SFN7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFN7", "url": "https://www.uniprot.org/uniprotkb/F1SFN7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SFN7", "url": "https://www.uniprot.org/uniprotkb/F1SFN7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SFN7", "url": "https://www.uniprot.org/uniprotkb/F1SFN7" } ], "pmid": "" }, { "name": "sequence-specific double-stranded DNA binding", "id": "GO:1990837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990837", "evidence": [ { "database": "UniProtKB", "id": "F1SFN7", "url": "https://www.uniprot.org/uniprotkb/F1SFN7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFN7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 282, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFN7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFN7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFN7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFN7" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 212, "end_pos": 272, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 252, "end_pos": 254 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFN9-1", "uniprot_ac": "F1SFN9", "uniprot_id": "F1SFN9_PIG", "mass": { "chemical_mass": 35464.0, "monoisotopic_mass": 35464.0 }, "refseq": { "ac": "XP_003355469", "name": "homeobox protein Hox-C13", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355469" }, "gene_names": [ { "name": "HOXC13", "type": "recommended", "evidence": [ { "id": "F1SFN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ] }, { "name": "HOXC13", "type": "synonym", "evidence": [ { "id": "XP_003355469", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355469" } ] } ], "protein_names": [ { "name": "Homeobox C13", "type": "synonym", "evidence": [ { "id": "F1SFN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFN9/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein Hox-C13", "type": "synonym", "evidence": [ { "id": "XP_003355469", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355469" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HOXC13", "url": "https://www.uniprot.org/uniprotkb/F1SFN9", "locus": { "chromosome": "5", "start_pos": 19158646, "end_pos": 19151084, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000279", "url": "https://www.ensembl.org/id/ENSSSCG00000000279" } ] } } ], "crossref": [ { "id": "F1SFN9", "url": "https://alphafold.ebi.ac.uk/entry/F1SFN9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000279", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000279", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518969", "url": "https://www.ncbi.nlm.nih.gov/gene/100518969", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518969", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518969", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFN9", "url": "https://www.orthodb.org/?gene=F1SFN9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45804", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45804", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45804:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45804:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003355469", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355469", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFN9-1", "url": "https://www.uniprot.org/uniprotkb/F1SFN9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTSLLLHPRWPESLMYVYEDSAAESGSGGGGGGGGGGGGAGGAGGGCSGASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVNSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPHLHST", "length": 332, "header": "tr|F1SFN9-1|F1SFN9_PIG Isoform 1 of Homeobox C13 OS=Sus scrofa OX=9823 GN=HOXC13 PE=3 SV=4 CANONICAL=F1SFN9-1" }, "isoforms": [ { "isoform_ac": "F1SFN9-1", "url": "https://www.uniprot.org/uniprotkb/F1SFN9/entry#F1SFN9-1", "sequence": { "sequence": "MTTSLLLHPRWPESLMYVYEDSAAESGSGGGGGGGGGGGGAGGAGGGCSGASPGKAPSMDGLGSSCPASHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPTSSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGDKYPEPSGALPGDDLSSRAKEFAFYPSFASSYQAMPGYLDVSVVPGISGHPEPRHDALIPVEGYQHWALSNGWDSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVNSYRRGRKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPHLHST", "length": 332, "header": "tr|F1SFN9-1|F1SFN9_PIG Isoform 1 of Homeobox C13 OS=Sus scrofa OX=9823 GN=HOXC13 PE=3 SV=4 CANONICAL=F1SFN9-1" }, "locus": { "chromosome": "5", "start_pos": 19157642, "end_pos": 19151169, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000300.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000300.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000295.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000295.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518969", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518969", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor binding", "id": "GO:0140297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140297", "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SFN9", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFN9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 332, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFN9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFN9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFN9" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 260, "end_pos": 320, "start_aa": "Arg", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 300, "end_pos": 302 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFR3-1", "uniprot_ac": "F1SFR3", "uniprot_id": "F1SFR3_PIG", "mass": { "chemical_mass": 230126.0, "monoisotopic_mass": 230126.0 }, "refseq": {}, "gene_names": [ { "name": "ESPL1", "type": "recommended", "evidence": [ { "id": "F1SFR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ] } ], "protein_names": [ { "name": "separase", "type": "recommended", "evidence": [ { "id": "F1SFR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR3/entry#names_and_taxonomy" } ] }, { "name": "3.4.22.49", "type": "synonym", "evidence": [ { "id": "F1SFR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ESPL1", "url": "https://www.uniprot.org/uniprotkb/F1SFR3", "locus": { "chromosome": "5", "start_pos": 18509913, "end_pos": 18487052, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000265", "url": "https://www.ensembl.org/id/ENSSSCG00000000265" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000265", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000265", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR005314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12792", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12792", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12792:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12792:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03568", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03568", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSFKGVNFGTLLSSPKEAEELLPDLKEFLSKLPVGSPSCRSDAERRQTCDAVLRACNQQLTVRLACPEHLGSLLELAELACDGYLRSTPQRPPLYLERILFIFLRNVAAQGIPEATLRLAQPLHACMVQCSRQAAPQDYEAVARGSFSLLWKGAEALVEPRVAFSARLKALSFLVLLEDESTPCEVPHFASPTACRVVAAHQLFDTSGHGLNEADADFLDDLLSRHVVRALVGEGGDSPGPLSSQKALCLLELTLEHCRRFSWSHHYAKATRAVEKAHDYLKNTSLAPSLQLCQLAVELLQVGEGGPQAVAKLLIKASAVLKNCMEAPSPPLRALCDSCQFFLSALERGTKRCYGPDAVLSLFAFLGSYCSLIRQLQDGVCGDSSKQQQALVQMHFQGLHLYTVVVYDFAQGCQVADMSDLAQLVESCRSAVVWMLEALKSLSGQELTDYLGMTASHTSNLAYSFYSHKLYAEACAISEPLCQHLGLAKPGTYPEVPPEKLHRCFRLHVESLKKLGKQAQGCKMVTLWLAALQPSGPEHMTEPVTFWVRVKMDAARAGDKELQLKTLRDSLSGWDPETLALLLREELQAYKAVRADTGQERFNVICDLMELSPEETPAGAWARATHLVELAQVLCYHDFAQQTDCSALDAIREALQLLESVRPEPQAKDRLLDDKAQALLWLYICTLEAKMQEGIERDRRAQAPSNLEEFEVNDLNYEDKLQEDRFLYSNIAFNLAADAAQSKCLDQALALWKEVLTKGQAPAVRCLQQTAASLQILAALYQLVAKPLQALEVLLLVRMVSQRLEDHGKAAGTSCRITQLLLTLRCPSYAQVYLAEAESSLKLLDRTTDTYLLLSLTCDLLRSQVYCACQKVAEGVSLLLSVLRNPALQRSSKAWYLLRVQALQLVAVCLSLSSDSLPAPLWEQLCAQGWQTPEIALIDSHKLLRSIILLLMGSDVLSIQKTAVETPFLDYGENLVQKWQVLTEVLSCSEKLVCRLGRLGSVSEAKAFCLEALKLTMKLQIPRQCALFLVLKGELELARNDVDLCQSDLQQVLFLLESCTEFVGLGQQPDSVKKVHLQKGKQQARVPRPPELPEEELVLRGPALELVATVAKEPGPIAPSTNSSPVLKTKPQPSPGFLTHLPTCDCSLCASPVLSMVCLRWASVTAGVKLAVGHQAQGLDLLQVVLKGCPAATERLTQALQASLNREACPSPVPGLFDEILAQAHTQLALEGLSQPSNKSLGKVLESGLKFVAARIPHLEPWRASLLWVQALAKLAGLSCCTAQLFASSWGWQPPSVKTPTGSEPSKPRSQKHSGRGRQQAVSATLPLSNTSLKGLEGGGPPCTPKAGRVRQAGPRVPFTVFEEVLLTKSKPEVPKAPRVQQRVQTRLKVNFSDDSDLEDPVAVEAQCAEGPKKRSTASRGRGRARKVLSVKTHAEAAPASGPEHPILSGRSRRAKKVASGHCEELGPEMMRTIPEEELMDNQMEMSFEILRGSDGEDSASGGKTPAPGPDTAIGECEVLRRDAGKEELPVPCPDKALGPRHRLPSAPMAISLSTLDSICASLSIAFRGVSHCPPSGLYAHLCRLLALCLGHRDPYATACLVTESVSITCRHQLLIHLHRRLSKAQKRQGSLEIADQLQELSLQERPGDTPLAHIQHLFSFRALGSGHFPQPEKERFQERLALIPGGVTVCVLALATLQPGTVGNTLLLTRLEKDNPPVTMQIPTAQNKLSLSSALKEFDAIQKEQKENSSCTDKREWWTGRLELDHRMEVLTTSLEKHVLGCWRGLLLPSSEDPGPSQEASRLQELLQECGWKYPDPTLLKIILSSASTLTPQDIQALAYGLCPARPERAQELLSEAVGRLQHQTVASSRHLVLVLDKDLQKLPWESMPSLRALPVTRLPSFRFLLSYSIIKECGASSVLSQGVNPRSTFYVLNPHNNLSSTEEQFRAHFSSEAGWKGVVGEVPSPEQVQAALTEHDLYIYAGHGAGARFLDGQAVLRLSCRAVALLFGCSSAALAVHGNLEGAGIVLKYIMAGCPLFLGNLWDVTDRDIDRYTEALLQGWLGAGSGAPLLYYVNQARQAPRLKYLIGAAPVAYGLPVSLR", "length": 2103, "header": "tr|F1SFR3-1|F1SFR3_PIG Isoform 1 of separase OS=Sus scrofa OX=9823 GN=ESPL1 PE=4 SV=3 CANONICAL=F1SFR3-1" }, "isoforms": [ { "isoform_ac": "F1SFR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFR3/entry#F1SFR3-1", "sequence": { "sequence": "MRSFKGVNFGTLLSSPKEAEELLPDLKEFLSKLPVGSPSCRSDAERRQTCDAVLRACNQQLTVRLACPEHLGSLLELAELACDGYLRSTPQRPPLYLERILFIFLRNVAAQGIPEATLRLAQPLHACMVQCSRQAAPQDYEAVARGSFSLLWKGAEALVEPRVAFSARLKALSFLVLLEDESTPCEVPHFASPTACRVVAAHQLFDTSGHGLNEADADFLDDLLSRHVVRALVGEGGDSPGPLSSQKALCLLELTLEHCRRFSWSHHYAKATRAVEKAHDYLKNTSLAPSLQLCQLAVELLQVGEGGPQAVAKLLIKASAVLKNCMEAPSPPLRALCDSCQFFLSALERGTKRCYGPDAVLSLFAFLGSYCSLIRQLQDGVCGDSSKQQQALVQMHFQGLHLYTVVVYDFAQGCQVADMSDLAQLVESCRSAVVWMLEALKSLSGQELTDYLGMTASHTSNLAYSFYSHKLYAEACAISEPLCQHLGLAKPGTYPEVPPEKLHRCFRLHVESLKKLGKQAQGCKMVTLWLAALQPSGPEHMTEPVTFWVRVKMDAARAGDKELQLKTLRDSLSGWDPETLALLLREELQAYKAVRADTGQERFNVICDLMELSPEETPAGAWARATHLVELAQVLCYHDFAQQTDCSALDAIREALQLLESVRPEPQAKDRLLDDKAQALLWLYICTLEAKMQEGIERDRRAQAPSNLEEFEVNDLNYEDKLQEDRFLYSNIAFNLAADAAQSKCLDQALALWKEVLTKGQAPAVRCLQQTAASLQILAALYQLVAKPLQALEVLLLVRMVSQRLEDHGKAAGTSCRITQLLLTLRCPSYAQVYLAEAESSLKLLDRTTDTYLLLSLTCDLLRSQVYCACQKVAEGVSLLLSVLRNPALQRSSKAWYLLRVQALQLVAVCLSLSSDSLPAPLWEQLCAQGWQTPEIALIDSHKLLRSIILLLMGSDVLSIQKTAVETPFLDYGENLVQKWQVLTEVLSCSEKLVCRLGRLGSVSEAKAFCLEALKLTMKLQIPRQCALFLVLKGELELARNDVDLCQSDLQQVLFLLESCTEFVGLGQQPDSVKKVHLQKGKQQARVPRPPELPEEELVLRGPALELVATVAKEPGPIAPSTNSSPVLKTKPQPSPGFLTHLPTCDCSLCASPVLSMVCLRWASVTAGVKLAVGHQAQGLDLLQVVLKGCPAATERLTQALQASLNREACPSPVPGLFDEILAQAHTQLALEGLSQPSNKSLGKVLESGLKFVAARIPHLEPWRASLLWVQALAKLAGLSCCTAQLFASSWGWQPPSVKTPTGSEPSKPRSQKHSGRGRQQAVSATLPLSNTSLKGLEGGGPPCTPKAGRVRQAGPRVPFTVFEEVLLTKSKPEVPKAPRVQQRVQTRLKVNFSDDSDLEDPVAVEAQCAEGPKKRSTASRGRGRARKVLSVKTHAEAAPASGPEHPILSGRSRRAKKVASGHCEELGPEMMRTIPEEELMDNQMEMSFEILRGSDGEDSASGGKTPAPGPDTAIGECEVLRRDAGKEELPVPCPDKALGPRHRLPSAPMAISLSTLDSICASLSIAFRGVSHCPPSGLYAHLCRLLALCLGHRDPYATACLVTESVSITCRHQLLIHLHRRLSKAQKRQGSLEIADQLQELSLQERPGDTPLAHIQHLFSFRALGSGHFPQPEKERFQERLALIPGGVTVCVLALATLQPGTVGNTLLLTRLEKDNPPVTMQIPTAQNKLSLSSALKEFDAIQKEQKENSSCTDKREWWTGRLELDHRMEVLTTSLEKHVLGCWRGLLLPSSEDPGPSQEASRLQELLQECGWKYPDPTLLKIILSSASTLTPQDIQALAYGLCPARPERAQELLSEAVGRLQHQTVASSRHLVLVLDKDLQKLPWESMPSLRALPVTRLPSFRFLLSYSIIKECGASSVLSQGVNPRSTFYVLNPHNNLSSTEEQFRAHFSSEAGWKGVVGEVPSPEQVQAALTEHDLYIYAGHGAGARFLDGQAVLRLSCRAVALLFGCSSAALAVHGNLEGAGIVLKYIMAGCPLFLGNLWDVTDRDIDRYTEALLQGWLGAGSGAPLLYYVNQARQAPRLKYLIGAAPVAYGLPVSLR", "length": 2103, "header": "tr|F1SFR3-1|F1SFR3_PIG Isoform 1 of separase OS=Sus scrofa OX=9823 GN=ESPL1 PE=4 SV=3 CANONICAL=F1SFR3-1" }, "locus": { "chromosome": "5", "start_pos": 18509750, "end_pos": 18487563, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000284.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000284.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000280.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000280.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "meiotic chromosome separation", "id": "GO:0051307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051307", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "pmid": "" }, { "name": "mitotic sister chromatid segregation", "id": "GO:0000070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000070", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "pmid": "" }, { "name": "mitotic spindle", "id": "GO:0072686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072686", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cysteine-type endopeptidase activity", "id": "GO:0004197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004197", "evidence": [ { "database": "UniProtKB", "id": "F1SFR3", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1123, "end_pos": 1125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1239, "end_pos": 1241, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1331, "end_pos": 1333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1392, "end_pos": 1394, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1750, "end_pos": 1752, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1940, "end_pos": 1942, "annotation": "n_glycosylation_sequon" }, { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-2467775", "name": "Autocleavage of ESPL1 (Separase)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2467775", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467775" } ] }, { "id": "R-SSC-2467798", "name": "PTTG1 (Securin) sequesters ESPL1 (Separase)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2467798", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467798" } ] }, { "id": "R-SSC-2467809", "name": "ESPL1 (Separase) cleaves centromeric cohesin", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "chromosome, centromeric region, cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2467809", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467809" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR3" }, { "id": "PS51700", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51700" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase C50", "eco_id": "ECO_0000259", "start_pos": 1928, "end_pos": 2023, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1123, "end_pos": 1125 }, { "start_pos": 1239, "end_pos": 1241 }, { "start_pos": 1331, "end_pos": 1333 }, { "start_pos": 1392, "end_pos": 1394 }, { "start_pos": 1750, "end_pos": 1752 }, { "start_pos": 1940, "end_pos": 1942 }, { "start_pos": 284, "end_pos": 286 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFR8-1", "uniprot_ac": "F1SFR8", "uniprot_id": "F1SFR8_PIG", "mass": { "chemical_mass": 120741.0, "monoisotopic_mass": 120741.0 }, "refseq": {}, "gene_names": [ { "name": "LRIG1", "type": "recommended", "evidence": [ { "id": "F1SFR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR8" } ] } ], "protein_names": [ { "name": "Leucine rich repeats and immunoglobulin like domains 1", "type": "synonym", "evidence": [ { "id": "F1SFR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFR8", "url": "https://www.uniprot.org/uniprotkb/F1SFR8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRIG1", "url": "https://www.uniprot.org/uniprotkb/F1SFR8", "locus": { "chromosome": "13", "start_pos": 47909011, "end_pos": 48027384, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011499", "url": "https://www.ensembl.org/id/ENSSSCG00000011499" } ] } } ], "crossref": [ { "id": "F1SFR8", "url": "https://alphafold.ebi.ac.uk/entry/F1SFR8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011499", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011499", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05763", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05763", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45842", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45842", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45842:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45842:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01463", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01463", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-177929", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-177929", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6807004", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807004", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFR8", "url": "https://www.uniprot.org/uniprotkb/F1SFR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFR8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARPVRGALGAPRSSPCPLLRLLLLLLLLGLEPASAAAGPRAPCTAACACAGDSLDCGGRGLAALPGDLPAWTRSLNLSYNKLSEIDPAGFEDLPNLQEVYLSNNELAAIPSLGPASSHIVSLFLQHNRIRSVEGSQLKAYLSLEVLDLSSNNITEIRKVLVWLLTTAFCLPNHSRNLASNRISTLESGAFDGLSRSLLTLRLSKNRITQLPVKAFKLPRLTQLDLNRNRIRLIEGLTFQGLDSLEVLKLQRNNISKLTDGAFWGLARMHVLHLEFNSLAEVNSGSLYGLTALHQLHLSNNSISRINRDGWSFCQRLHELILSFNNLTRLDEESLADLSSLSILRLSHNSISHIAEGAFRGLKSLRVLELDHNEISGTIEDTSGAFTGLDSLSKLTLFGNKIKSVAKRAFSGLEGLEHLNLGENAIRSVQFDAFVKMKNLKELHISSDSFLCDCQLKWLPPWLLGRMLQGFVTATCAHPESLKGQSIFSVPPESFVCDDLPKPQIITQPETTTAVVGRDIRFTCSAASSSSSPMTFAWKKDSEVLANADMENFAHVRAQDGEVMEYTTILHLRRVTFGHEGRYQCVITNHFGSTYSHKARLTVNVLPSFTKMPHDIAIRTGTMARLECAATGHPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKVDDMGVYSCTAQNSAGSISANATLTVLETPSLAVPLEDRVVSVGETVALQCKATGSPPPRITWLKGGRPLSLTERHHFTPGNQLLVVQNVVAEDAGRYTCEMSNALGTARAHSQLSILPTPGCRKDGTTVGIFTIAVVCSIVLTSLVWVCIIYQTRKKSEEYSVTNTDETIVPPDVPSYLSSQGTLSDRQETVVRTEGGHQANGHIESNGVCPRDAGLFPEVETRGIACRQPKLCVGYTKEPWKMVEKVDGTPAPQKMTEHSSPAVVCGDGSTDTDSHSKEEVFYPQPVSRDSAQPGTPSSQEPSQRDHQNAAQPLSSGPTDGSRSSCRASVYPSNHDRMLTAQKQQPVTPLDGKGASSWTLARLCELDSLDLQPPSTLAPGKSELTEATSGLPDVPGEGQHLLLSNGHLPQAHDPSPECPPLTGQLPGTQSARLLFAPQS", "length": 1112, "header": "tr|F1SFR8-1|F1SFR8_PIG Isoform 1 of Leucine rich repeats and immunoglobulin like domains 1 OS=Sus scrofa OX=9823 GN=LRIG1 PE=1 SV=4 CANONICAL=F1SFR8-1" }, "isoforms": [ { "isoform_ac": "F1SFR8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFR8/entry#F1SFR8-1", "sequence": { "sequence": "MARPVRGALGAPRSSPCPLLRLLLLLLLLGLEPASAAAGPRAPCTAACACAGDSLDCGGRGLAALPGDLPAWTRSLNLSYNKLSEIDPAGFEDLPNLQEVYLSNNELAAIPSLGPASSHIVSLFLQHNRIRSVEGSQLKAYLSLEVLDLSSNNITEIRKVLVWLLTTAFCLPNHSRNLASNRISTLESGAFDGLSRSLLTLRLSKNRITQLPVKAFKLPRLTQLDLNRNRIRLIEGLTFQGLDSLEVLKLQRNNISKLTDGAFWGLARMHVLHLEFNSLAEVNSGSLYGLTALHQLHLSNNSISRINRDGWSFCQRLHELILSFNNLTRLDEESLADLSSLSILRLSHNSISHIAEGAFRGLKSLRVLELDHNEISGTIEDTSGAFTGLDSLSKLTLFGNKIKSVAKRAFSGLEGLEHLNLGENAIRSVQFDAFVKMKNLKELHISSDSFLCDCQLKWLPPWLLGRMLQGFVTATCAHPESLKGQSIFSVPPESFVCDDLPKPQIITQPETTTAVVGRDIRFTCSAASSSSSPMTFAWKKDSEVLANADMENFAHVRAQDGEVMEYTTILHLRRVTFGHEGRYQCVITNHFGSTYSHKARLTVNVLPSFTKMPHDIAIRTGTMARLECAATGHPNPQIAWQKDGGTDFPAARERRMHVMPDDDVFFITDVKVDDMGVYSCTAQNSAGSISANATLTVLETPSLAVPLEDRVVSVGETVALQCKATGSPPPRITWLKGGRPLSLTERHHFTPGNQLLVVQNVVAEDAGRYTCEMSNALGTARAHSQLSILPTPGCRKDGTTVGIFTIAVVCSIVLTSLVWVCIIYQTRKKSEEYSVTNTDETIVPPDVPSYLSSQGTLSDRQETVVRTEGGHQANGHIESNGVCPRDAGLFPEVETRGIACRQPKLCVGYTKEPWKMVEKVDGTPAPQKMTEHSSPAVVCGDGSTDTDSHSKEEVFYPQPVSRDSAQPGTPSSQEPSQRDHQNAAQPLSSGPTDGSRSSCRASVYPSNHDRMLTAQKQQPVTPLDGKGASSWTLARLCELDSLDLQPPSTLAPGKSELTEATSGLPDVPGEGQHLLLSNGHLPQAHDPSPECPPLTGQLPGTQSARLLFAPQS", "length": 1112, "header": "tr|F1SFR8-1|F1SFR8_PIG Isoform 1 of Leucine rich repeats and immunoglobulin like domains 1 OS=Sus scrofa OX=9823 GN=LRIG1 PE=1 SV=4 CANONICAL=F1SFR8-1" }, "locus": { "chromosome": "13", "start_pos": 48026763, "end_pos": 47910420, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012584.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012584.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012255.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012255.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 791, "start_aa": "Thr", "end_pos": 791, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr791", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 969, "start_aa": "Thr", "end_pos": 969, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr969", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 992, "start_aa": "Thr", "end_pos": 992, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr992", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFR8", "url": "https://www.uniprot.org/uniprotkb/F1SFR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-177929", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-177929", "resource": "Reactome", "description": "Signaling by EGFR" }, { "id": "R-SSC-6807004", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807004", "resource": "Reactome", "description": "Negative regulation of MET activity" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFR8", "url": "https://www.uniprot.org/uniprotkb/F1SFR8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sensory perception of sound", "id": "GO:0007605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007605", "evidence": [ { "database": "UniProtKB", "id": "F1SFR8", "url": "https://www.uniprot.org/uniprotkb/F1SFR8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1SFR8", "url": "https://www.uniprot.org/uniprotkb/F1SFR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 326, "end_pos": 328, "annotation": "n_glycosylation_sequon" }, { "start_pos": 692, "end_pos": 694, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFR8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1112, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFR8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFR8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFR8" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 503, "end_pos": 602, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 791, 969, 992 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 153, "end_pos": 155 }, { "start_pos": 173, "end_pos": 175 }, { "start_pos": 254, "end_pos": 256 }, { "start_pos": 300, "end_pos": 302 }, { "start_pos": 326, "end_pos": 328 }, { "start_pos": 692, "end_pos": 694 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFS6-1", "uniprot_ac": "F1SFS6", "uniprot_id": "F1SFS6_PIG", "mass": { "chemical_mass": 81686.0, "monoisotopic_mass": 81686.0 }, "refseq": { "ac": "XP_020923477", "name": "arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923477" }, "gene_names": [ { "name": "ACAP1", "type": "recommended", "evidence": [ { "id": "F1SFS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFS6" } ] }, { "name": "ACAP1", "type": "synonym", "evidence": [ { "id": "XP_020923477", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923477" } ] } ], "protein_names": [ { "name": "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SFS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFS6/entry#names_and_taxonomy" } ] }, { "name": "Centaurin-beta", "type": "synonym", "evidence": [ { "id": "F1SFS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFS6/entry#names_and_taxonomy" } ] }, { "name": "Cnt-b", "type": "synonym", "evidence": [ { "id": "F1SFS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFS6/entry#names_and_taxonomy" } ] }, { "name": "arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "XP_020923477", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923477" } ] } ], "function": [ { "annotation": "GTPase-activating protein (GAP) for ADP ribosylation factor 6 (ARF6) required for clathrin-dependent export of proteins from recycling endosomes to trans-Golgi network and cell surface. Required for regulated export of ITGB1 from recycling endosomes to the cell surface and ITGB1-dependent cell migration.", "evidence": [ { "database": "UniProtKB", "id": "F1SFS6", "url": "https://www.uniprot.org/uniprotkb/F1SFS6#function" }, { "database": "UniProtKB", "id": "ARBA00056671", "url": "https://www.uniprot.org/uniprotkb/ARBA00056671#function" }, { "database": "UniProtKB", "id": "F1SFT6", "url": "https://www.uniprot.org/uniprotkb/F1SFT6#function" } ] }, { "annotation": "GTPase-activating protein for the ADP ribosylation factor family.", "evidence": [ { "database": "UniProtKB", "id": "F1SFS6", "url": "https://www.uniprot.org/uniprotkb/F1SFS6#function" }, { "database": "UniProtKB", "id": "RU369028", "url": "https://www.uniprot.org/uniprotkb/RU369028#function" }, { "database": "UniProtKB", "id": "F1SFT6", "url": "https://www.uniprot.org/uniprotkb/F1SFT6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFS6", "url": "https://www.uniprot.org/uniprotkb/F1SFS6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACAP1", "url": "https://www.uniprot.org/uniprotkb/F1SFS6", "locus": { "chromosome": "12", "start_pos": 52697459, "end_pos": 52685045, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017943", "url": "https://www.ensembl.org/id/ENSSSCG00000017943" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017943", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017943", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08852", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08852", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13250", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13250", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100623422", "url": "https://www.ncbi.nlm.nih.gov/gene/100623422", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038508", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038508", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045258", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045258", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623422", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623422", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QYCAHSK", "url": "https://omabrowser.org/oma/group/QYCAHSK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFS6", "url": "https://www.orthodb.org/?gene=F1SFS6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23180", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23180", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23180:SF197", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23180:SF197", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16746", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16746", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020923477", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923477", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFS6", "url": "https://www.uniprot.org/uniprotkb/F1SFS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFT6", "url": "https://www.uniprot.org/uniprotkb/F1SFT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFT6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFT6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVKLDFEECLKDSPRFRASVELVEAEVSELETRLEKLLKLGNGLLESGRHYLAASRAFIVGICDLAHLGPPEPMMAECLDKFTQSLSHKLDSHAELLDTTHQTLQQQIQTLVKEGLRGFREARRDFWRGAESLEAALAHNAEVPRRRAQEAEEAGAALKVARAGYRGRALDYALQINVIEDKRKFDIMEFVLRLVEAQATHFQQGHEELSRLAQYRKELGGQLHRLVLNSAREKRDMEQRHVLLKQKELGGEEPEPSLKEGPGGLVMEGHLFKRASNAFKTWSRRWFTIQSNQLVYQKKYKDPVTVVVDDLRLCTVKLCPDSERRFCFEVVSPSKSCLLQADSERLLQLWVSAVQSSIATAFSQARLDDSPRGPGQSSGHLAAGSAATLGCGGMARGREPGGVSHVAAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVVMNQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGPPRGQPPVPPKPGNIRPRPGSFRSKPEPPSEDLGSLHPGALLFRAAGHPPSLPTMADALAHGADVNWVNASQENATPLIQATAANSLLACEFLLQNGASVNQADNQGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAVEKANADIVTLLRLAKMREADAAQGQAGDETYLDIFRDFSLMASDDPEKLRRRSHDLHTL", "length": 741, "header": "tr|F1SFS6-1|F1SFS6_PIG Isoform 1 of Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein OS=Sus scrofa OX=9823 GN=ACAP1 PE=4 SV=2 CANONICAL=F1SFS6-1" }, "isoforms": [ { "isoform_ac": "F1SFS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFS6/entry#F1SFS6-1", "sequence": { "sequence": "MTVKLDFEECLKDSPRFRASVELVEAEVSELETRLEKLLKLGNGLLESGRHYLAASRAFIVGICDLAHLGPPEPMMAECLDKFTQSLSHKLDSHAELLDTTHQTLQQQIQTLVKEGLRGFREARRDFWRGAESLEAALAHNAEVPRRRAQEAEEAGAALKVARAGYRGRALDYALQINVIEDKRKFDIMEFVLRLVEAQATHFQQGHEELSRLAQYRKELGGQLHRLVLNSAREKRDMEQRHVLLKQKELGGEEPEPSLKEGPGGLVMEGHLFKRASNAFKTWSRRWFTIQSNQLVYQKKYKDPVTVVVDDLRLCTVKLCPDSERRFCFEVVSPSKSCLLQADSERLLQLWVSAVQSSIATAFSQARLDDSPRGPGQSSGHLAAGSAATLGCGGMARGREPGGVSHVAAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVVMNQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGPPRGQPPVPPKPGNIRPRPGSFRSKPEPPSEDLGSLHPGALLFRAAGHPPSLPTMADALAHGADVNWVNASQENATPLIQATAANSLLACEFLLQNGASVNQADNQGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAVEKANADIVTLLRLAKMREADAAQGQAGDETYLDIFRDFSLMASDDPEKLRRRSHDLHTL", "length": 741, "header": "tr|F1SFS6-1|F1SFS6_PIG Isoform 1 of Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein OS=Sus scrofa OX=9823 GN=ACAP1 PE=4 SV=2 CANONICAL=F1SFS6-1" }, "locus": { "chromosome": "12", "start_pos": 52697382, "end_pos": 52685502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029870.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029870.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020781.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020781.2" } ] } }, { "isoform_ac": "F1SFT6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFS6/entry#F1SFT6-1", "sequence": { "sequence": "MTVKLDFEECLKDSPRFRASVELVEAEVSELETRLEKLLKLGNGLLESGRHYLAASRAFIVGICDLAHLGPPEPMMAECLDKFTQSLSHKLDSHAELLDTTHQTLQQQIQTLVKEGLRGFREARRDFWRGAESLEAALAHNAEVPRRRAQEAEEAGAALKVARAGYRGRALDYALQINVIEDKRKFDIMEFLHRLVLNSAREKRDMEQRHVLLKQKELGGEEPEPSLKEGPGGLVMEGHLFKRASNAFKTWSRRWFTIQSNQLVYQKKYKDPVTVVVDDLRLCTVKLCPDSERRFCFEVVSPSKSCLLQADSERLLQLWVSAVQSSIATAFSQARLDDSPRGPGQSSGHLAAGSAATLGCGGMARGREPGGVSHVAAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVVMNQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGPPRGQPPVPPKPGNIRPRPGSFRSKPEPPSEDLGSLHPGALLFRAAGHPPSLPTMADALAHGADVNWVNASQENATPLIQATAANSLLACEFLLQNGASVNQADNQGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAVEKANADIVTLLRLAKMREADAAQGQAGDETYLDIFRDFSLMASDDPEKLRRRSHDLHTL", "length": 709, "header": "tr|F1SFT6-1|F1SFT6_PIG Computationally mapped isoform of Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein OS=Sus scrofa OX=9823 GN=ACAP1 PE=4 SV=5 CANONICAL=F1SFS6-1" }, "locus": { "chromosome": "12", "start_pos": 52697382, "end_pos": 52685502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019527.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019527.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019009.5", "url": "https://www.ensembl.org/id/ENSSSCP00000019009.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFS6", "url": "https://www.uniprot.org/uniprotkb/F1SFS6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623422", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623422", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4ABD3-1", "protein_name": "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein", "gene_name": "Acap1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVKLDFEECLKDSPRFRASIELVEAEVSELETRLEKLLKLGSCLLESGHHYLAASRAFVVGICDLAHLGPPEPMMAECLEKFTESLNHKLDSHAELLDATQHTLQQQIQTLVKEGLRGFREARRDFWRGAESLEAALSHNAEVPRRRVQEAEDAGTALRTARAVYRSRALDYALQVNVIEDKRKFDIMEFILRLVEAQATYFQQGHEELNQLAQYRKELGAQLHNLVLNSARERRDMEQRHVLLKQKELGGEEPEPSLKEGSSGLVMEGHLFKRASNAFKTWSRRWFTIQNNQLVYQKKYKDPVTVVVDDLRLCTVKLCPDSERRFCFEVVSTSKSCLLQADSERLLQLWVSAVQSSIASAFSQAHLENSPRGPGQVSGYHSPGSAATLSCGGPARGREPGGVGQVAAQVQSVDGNAQCCDCKEPAPEWASINLGITLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVVINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGPPRGHPPVPPKPSIRPQSGIVRSKSESPSEDIGSLHPGALLFQAAGYPPSLPTMADALAHGADVNWVNAGQGNATPLIRATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTEGRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQTGDETYLDIFRDFSLMASDDPEKLSRRSHDLHTL", "length": 740 }, "evidence": [ { "id": "F1SFS6", "url": "https://omabrowser.org/oma/group/F1SFS6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q15027-1", "protein_name": "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1", "gene_name": "ACAP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTVKLDFEECLKDSPRFRASIELVEAEVSELETRLEKLLKLGTGLLESGRHYLAASRAFVVGICDLARLGPPEPMMAECLEKFTVSLNHKLDSHAELLDATQHTLQQQIQTLVKEGLRGFREARRDFWRGAESLEAALTHNAEVPRRRAQEAEEAGAALRTARAGYRGRALDYALQINVIEDKRKFDIMEFVLRLVEAQATHFQQGHEELSRLSQYRKELGAQLHQLVLNSAREKRDMEQRHVLLKQKELGGEEPEPSLREGPGGLVMEGHLFKRASNAFKTWSRRWFTIQSNQLVYQKKYKDPVTVVVDDLRLCTVKLCPDSERRFCFEVVSTSKSCLLQADSERLLQLWVSAVQSSIASAFSQARLDDSPRGPGQGSGHLAIGSAATLGSGGMARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLHTL", "length": 740 }, "evidence": [ { "id": "F1SFS6", "url": "https://omabrowser.org/oma/group/F1SFS6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K2H4-1", "protein_name": "Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1", "gene_name": "Acap1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTVKLDFEECLKDSPRFRASIELVETEVSELETRLEKLLKLGSCLLESGQHYLAAGRAFVVGICDLARLGPPEPMMAECLEKFTVSLNHKLDSHAELLDATQHTLQQQIQTLVKEGLRGFREARRDFWRGAENLEAALTHNAEVPRRRVQEAEEAGTALRTARAGYRSRALDYALQVNVIEDKRKFDIMEFVLRLVEAQATYFQQGHEELNRLAQYRKELGTQLHNLVLNSARQKRDMEQRHVLLKQKELGGEEPEPSLKEGPSGLVMEGHLFKRASNAFKTWSRRWFTIQNNQLVYQKKYKDPVTVVVDDLRLCTVKLCPDSERRFCFEVVSTSKSCFLQADSERLLQLWVSAVQSSIASAFSQAHLENSPRGPGQVSGYHAPGSAATLACGGAARGRESGGVGQVAAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGRRGGRGPPRGHPPVPPKPPIRPHSGIVRSKSECPSDDMGSLHPGALLFQAAGHPPSLPTMADALAHGADVNWVNVGQGNATPLIRATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDTEGRDPLTIAMETTNADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLHTL", "length": 740 }, "evidence": [ { "id": "F1SFS6", "url": "https://omabrowser.org/oma/group/F1SFS6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1SFS6", "url": "https://www.uniprot.org/uniprotkb/F1SFS6" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SFS6", "url": "https://www.uniprot.org/uniprotkb/F1SFS6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "recycling endosome membrane", "id": "GO:0055038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055038", "evidence": [ { "database": "UniProtKB", "id": "F1SFS6", "url": "https://www.uniprot.org/uniprotkb/F1SFS6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 603, "end_pos": 605, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFS6" }, { "id": "PS50115", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50115" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Arf-GAP", "eco_id": "ECO_0000259", "start_pos": 405, "end_pos": 527, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFS6" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 265, "end_pos": 360, "start_aa": "Gly", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 603, "end_pos": 605 }, { "start_pos": 608, "end_pos": 610 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFV3-1", "uniprot_ac": "F1SFV3", "uniprot_id": "F1SFV3_PIG", "mass": { "chemical_mass": 11444.0, "monoisotopic_mass": 11444.0 }, "refseq": { "ac": "NP_001177097", "name": "protein S100-A14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177097" }, "gene_names": [ { "name": "S100A14", "type": "recommended", "evidence": [ { "id": "F1SFV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ] }, { "name": "S100A14", "type": "synonym", "evidence": [ { "id": "NP_001177097", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177097" } ] } ], "protein_names": [ { "name": "Protein S100-A14", "type": "recommended", "evidence": [ { "id": "F1SFV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV3/entry#names_and_taxonomy" } ] }, { "name": "S100 calcium-binding protein A14", "type": "synonym", "evidence": [ { "id": "F1SFV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV3/entry#names_and_taxonomy" } ] }, { "name": "protein S100-A14", "type": "synonym", "evidence": [ { "id": "NP_001177097", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177097" } ] } ], "function": [ { "annotation": "Modulates P53/TP53 protein levels, and thereby plays a role in the regulation of cell survival and apoptosis. Depending on the context, it can promote cell proliferation or apoptosis. Plays a role in the regulation of cell migration by modulating the levels of MMP2, a matrix protease that is under transcriptional control of P53/TP53. Does not bind calcium.", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3#function" }, { "database": "UniProtKB", "id": "ARBA00054538", "url": "https://www.uniprot.org/uniprotkb/ARBA00054538#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "S100A14", "url": "https://www.uniprot.org/uniprotkb/F1SFV3", "locus": { "chromosome": "4", "start_pos": 96029869, "end_pos": 96027639, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006582", "url": "https://www.ensembl.org/id/ENSSSCG00000006582" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006582", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006582", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05022", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05022", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153930", "url": "https://www.ncbi.nlm.nih.gov/gene/100153930", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "F1SFV3", "url": "https://www.ebi.ac.uk/intact/interactors/id:F1SFV3*", "database": "IntAct", "categories": [ "Other" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153930", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153930", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NFHQYSA", "url": "https://omabrowser.org/oma/group/NFHQYSA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFV3", "url": "https://www.orthodb.org/?gene=F1SFV3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11639", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11639", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11639:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11639:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001177097", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001177097", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFV3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS", "length": 104, "header": "tr|F1SFV3-1|F1SFV3_PIG Isoform 1 of Protein S100-A14 OS=Sus scrofa OX=9823 GN=S100A14 PE=1 SV=1 CANONICAL=F1SFV3-1" }, "isoforms": [ { "isoform_ac": "F1SFV3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFV3/entry#F1SFV3-1", "sequence": { "sequence": "MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS", "length": 104, "header": "tr|F1SFV3-1|F1SFV3_PIG Isoform 1 of Protein S100-A14 OS=Sus scrofa OX=9823 GN=S100A14 PE=1 SV=1 CANONICAL=F1SFV3-1" }, "locus": { "chromosome": "4", "start_pos": 96029209, "end_pos": 96028229, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007211.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007211.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007017.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007017.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153930", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153930", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A7N5-1", "protein_name": "Protein S100-A14", "gene_name": "S100a14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQCRSANAEDAQELSDVERAIETLIKNFHNYSVEGKKETLTPAELRDLVTQQLPHLMPSNCGLEEKIANLGNCNDSKLEFGSFWELIGEAAKSVKMERPVARS", "length": 104 }, "evidence": [ { "id": "F1SFV3", "url": "https://omabrowser.org/oma/group/F1SFV3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3MHP3-1", "protein_name": "Protein S100-A14", "gene_name": "S100A14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGQCRSANAEDAQELSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIANLGNCNDSKLEFGSFWELIGEAAKSVKLENAVQGS", "length": 104 }, "evidence": [ { "id": "F1SFV3", "url": "https://omabrowser.org/oma/group/F1SFV3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9D2Q8-1", "protein_name": "Protein S100-A14", "gene_name": "S100a14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQCRSANAEDAQEFSDVERAIETLIKNFHKYSVAGKKETLTPAELRDLVTQQLPHLMPSNCGLEEKIANLGNCNDSKLEFGSFWELIGEAAKSVKMERPVTRS", "length": 104 }, "evidence": [ { "id": "F1SFV3", "url": "https://omabrowser.org/oma/group/F1SFV3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HCY8-1", "protein_name": "Protein S100-A14", "gene_name": "S100A14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIANLGSCNDSKLEFRSFWELIGEAAKSVKLERPVRGH", "length": 104 }, "evidence": [ { "id": "F1SFV3", "url": "https://omabrowser.org/oma/group/F1SFV3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "response to lipopolysaccharide", "id": "GO:0032496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032496", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" }, { "name": "positive regulation of monocyte chemotaxis", "id": "GO:0090026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090026", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" }, { "name": "defense response to bacterium", "id": "GO:0042742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042742", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" }, { "name": "toll-like receptor 4 signaling pathway", "id": "GO:0034142", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034142", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" }, { "name": "positive regulation of granulocyte chemotaxis", "id": "GO:0071624", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071624", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium-dependent protein binding", "id": "GO:0048306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048306", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" }, { "name": "chemokine receptor binding", "id": "GO:0042379", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042379", "evidence": [ { "database": "UniProtKB", "id": "F1SFV3", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 75, "end_pos": 77, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV3" }, { "id": "SM01394", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01394" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "S100/CaBP-9k-type calcium binding subdomain", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 59, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 75, "end_pos": 77 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFV6-1", "uniprot_ac": "F1SFV6", "uniprot_id": "F1SFV6_PIG", "mass": { "chemical_mass": 11565.0, "monoisotopic_mass": 11565.0 }, "refseq": { "ac": "XP_001927371", "name": "protein S100-A3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927371" }, "gene_names": [ { "name": "S100A3", "type": "recommended", "evidence": [ { "id": "F1SFV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" } ] }, { "name": "S100A3", "type": "synonym", "evidence": [ { "id": "XP_001927371", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927371" } ] } ], "protein_names": [ { "name": "Protein S100", "type": "recommended", "evidence": [ { "id": "F1SFV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV6/entry#names_and_taxonomy" } ] }, { "name": "S100 calcium-binding protein", "type": "synonym", "evidence": [ { "id": "F1SFV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV6/entry#names_and_taxonomy" } ] }, { "name": "protein S100-A3", "type": "synonym", "evidence": [ { "id": "XP_001927371", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927371" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFV6", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "S100A3", "url": "https://www.uniprot.org/uniprotkb/F1SFV6", "locus": { "chromosome": "4", "start_pos": 96086827, "end_pos": 96084088, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006579", "url": "https://www.ensembl.org/id/ENSSSCG00000006579" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006579", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006579", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00213", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157925", "url": "https://www.ncbi.nlm.nih.gov/gene/100157925", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034325", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034325", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157925", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157925", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CVYCHEY", "url": "https://omabrowser.org/oma/group/CVYCHEY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFV6", "url": "https://www.orthodb.org/?gene=F1SFV6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11639", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11639", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11639:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11639:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927371", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927371", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFV6", "url": "https://www.uniprot.org/uniprotkb/F1SFV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFV6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPLEQGLAAVLCTFQEYSGRCGDKHKLCQAELKELLQKELPTWTPTELRECDYNKFMSVLDSDKDGEVDFVEYVRSLACLCTYCHEYFKDCPPEPPCSQ", "length": 101, "header": "tr|F1SFV6-1|F1SFV6_PIG Isoform 1 of Protein S100 OS=Sus scrofa OX=9823 GN=S100A3 PE=3 SV=1 CANONICAL=F1SFV6-1" }, "isoforms": [ { "isoform_ac": "F1SFV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFV6/entry#F1SFV6-1", "sequence": { "sequence": "MASPLEQGLAAVLCTFQEYSGRCGDKHKLCQAELKELLQKELPTWTPTELRECDYNKFMSVLDSDKDGEVDFVEYVRSLACLCTYCHEYFKDCPPEPPCSQ", "length": 101, "header": "tr|F1SFV6-1|F1SFV6_PIG Isoform 1 of Protein S100 OS=Sus scrofa OX=9823 GN=S100A3 PE=3 SV=1 CANONICAL=F1SFV6-1" }, "locus": { "chromosome": "4", "start_pos": 96086517, "end_pos": 96085759, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007207.3", "url": "https://www.ensembl.org/id/ENSSSCT00000007207.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007013.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007013.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFV6", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157925", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157925", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7IGK8-1", "protein_name": "Protein S100-A3", "gene_name": "S100a3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDTNKDCEVDFGEYVRALASLCLYCHEYFKDCPPEPPCPQ", "length": 101 }, "evidence": [ { "id": "F1SFV6", "url": "https://omabrowser.org/oma/group/F1SFV6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P33764-1", "protein_name": "Protein S100-A3", "gene_name": "S100A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARPLEQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFVEYVRSLACLCLYCHEYFKDCPSEPPCSQ", "length": 101 }, "evidence": [ { "id": "F1SFV6", "url": "https://omabrowser.org/oma/group/F1SFV6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P62818-1", "protein_name": "Protein S100-A3", "gene_name": "S100a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDTNKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ", "length": 101 }, "evidence": [ { "id": "F1SFV6", "url": "https://omabrowser.org/oma/group/F1SFV6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P62819-1", "protein_name": "Protein S100-A3", "gene_name": "S100a3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTRPLEQAVAAIVCTFQEYAGRCGDKYKICQSELKELLQKELPTWTPSEFRECDYNKFMSVLDTNKDCEVDFGEYVRSLASLCLYCHEYFKECPPEPPCPQ", "length": 101 }, "evidence": [ { "id": "F1SFV6", "url": "https://omabrowser.org/oma/group/F1SFV6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SFV6", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SFV6", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFV6", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transition metal ion binding", "id": "GO:0046914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046914", "evidence": [ { "database": "UniProtKB", "id": "F1SFV6", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" } ], "pmid": "" }, { "name": "calcium-dependent protein binding", "id": "GO:0048306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048306", "evidence": [ { "database": "UniProtKB", "id": "F1SFV6", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SFV6", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV6" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 85, "start_aa": "Asp", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFV8-1", "uniprot_ac": "F1SFV8", "uniprot_id": "F1SFV8_PIG", "mass": { "chemical_mass": 15369.0, "monoisotopic_mass": 15369.0 }, "refseq": {}, "gene_names": [ { "name": "S100A5", "type": "recommended", "evidence": [ { "id": "F1SFV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ] } ], "protein_names": [ { "name": "Protein S100", "type": "recommended", "evidence": [ { "id": "F1SFV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV8/entry#names_and_taxonomy" } ] }, { "name": "S100 calcium-binding protein", "type": "synonym", "evidence": [ { "id": "F1SFV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "S100A5", "url": "https://www.uniprot.org/uniprotkb/F1SFV8", "locus": { "chromosome": "4", "start_pos": 96096870, "end_pos": 96094147, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006577", "url": "https://www.ensembl.org/id/ENSSSCG00000006577" } ] } } ], "crossref": [ { "id": "F1SFV8", "url": "https://alphafold.ebi.ac.uk/entry/F1SFV8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006577", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006577", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00213", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034325", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034325", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11639", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11639", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11639:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11639:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPTQESEPSPLGAAALPALAVPSLPWVLLPPVRIHQGLLGLHPVMETPLEKALTTMVTTFHKYSGREGSKLTLSRRELKELIKKELCLGEMKESSVDDLMKSLDKNSDQEIDFKEYSVFLTTLCMAYNDFFLEDNQ", "length": 137, "header": "tr|F1SFV8-1|F1SFV8_PIG Isoform 1 of Protein S100 OS=Sus scrofa OX=9823 GN=S100A5 PE=3 SV=4 CANONICAL=F1SFV8-1" }, "isoforms": [ { "isoform_ac": "F1SFV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SFV8/entry#F1SFV8-1", "sequence": { "sequence": "MSPTQESEPSPLGAAALPALAVPSLPWVLLPPVRIHQGLLGLHPVMETPLEKALTTMVTTFHKYSGREGSKLTLSRRELKELIKKELCLGEMKESSVDDLMKSLDKNSDQEIDFKEYSVFLTTLCMAYNDFFLEDNQ", "length": 137, "header": "tr|F1SFV8-1|F1SFV8_PIG Isoform 1 of Protein S100 OS=Sus scrofa OX=9823 GN=S100A5 PE=3 SV=4 CANONICAL=F1SFV8-1" }, "locus": { "chromosome": "4", "start_pos": 96096760, "end_pos": 96094366, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007205.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007205.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007011.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007011.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "pmid": "" }, { "name": "calcium-dependent protein binding", "id": "GO:0048306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048306", "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "pmid": "" }, { "name": "copper ion binding", "id": "GO:0005507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005507", "evidence": [ { "database": "UniProtKB", "id": "F1SFV8", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFV8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 137, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFV8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFV8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFV8" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 127, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFW5-1", "uniprot_ac": "F1SFW5", "uniprot_id": "F1SFW5_PIG", "mass": { "chemical_mass": 72922.0, "monoisotopic_mass": 72922.0 }, "refseq": { "ac": "XP_013852550", "name": "long-chain fatty acid transport protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852550" }, "gene_names": [ { "name": "SLC27A3", "type": "recommended", "evidence": [ { "id": "F1SFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ] }, { "name": "SLC27A3", "type": "synonym", "evidence": [ { "id": "XP_013852550", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852550" } ] } ], "protein_names": [ { "name": "long-chain-fatty-acid--CoA ligase", "type": "recommended", "evidence": [ { "id": "F1SFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW5/entry#names_and_taxonomy" } ] }, { "name": "6.2.1.3", "type": "synonym", "evidence": [ { "id": "F1SFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW5/entry#names_and_taxonomy" } ] }, { "name": "Long-chain-fatty-acid--CoA ligase", "type": "synonym", "evidence": [ { "id": "F1SFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW5/entry#names_and_taxonomy" } ] }, { "name": "long-chain fatty acid transport protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013852550", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852550" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC27A3", "url": "https://www.uniprot.org/uniprotkb/F1SFW5", "locus": { "chromosome": "4", "start_pos": 95898804, "end_pos": 95903604, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006569", "url": "https://www.ensembl.org/id/ENSSSCG00000006569" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006569", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006569", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157568", "url": "https://www.ncbi.nlm.nih.gov/gene/100157568", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020845", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020845", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157568", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157568", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RDTRGHC", "url": "https://omabrowser.org/oma/group/RDTRGHC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFW5", "url": "https://www.orthodb.org/?gene=F1SFW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43107", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43107", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43107:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43107:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13193", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13193", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013852550", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852550", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "33639", "url": "https://www.rhea-db.org/rhea/33639", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "54536", "url": "https://www.rhea-db.org/rhea/54536", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAFLLLPLLLLLPLLLLLPKLRLWPQLRWLAADLAFTVRALRCKRVLRARALAAAAANPEGPEGGCSLAWRLAQLAQQRPAHTFLIHGARRFSYAEAESQSNRAARAFLRARGWDRGSGGGGGPRGAGESQWAAAGSGAARAGREGDGAAPLAPGATVALLLPACPEFLWLWFGLAKAGLRTAFVPTALRRGPLLHCLRSCGARALVLAAEFLESLEPDLPALRAMGLHLWAAGSETYPAGISDLLAEVSAEVDAPVPGYLSAPENIMDTCLYIFTSGTTGLPKAARISHLKVLQCQGFYQLCGARQEDVIYLALPLYHMSGSLLGIVGCLGIGATVVLKSKFSAGQFWEDCQQHRVTVFQYIGELCRYLVNQPPNQAEHGHKVRMAVGSGLRPDTWERFVRRFGPLRVLETYGLTEGNVATFNYTGQRGAVGRASWLYKHVFPFSLIRYDVTTGEPVRNTRGHCVATSPGEPGLLVAPVSQQSPFLGYAGGPELAQGKLLKDVFRPGDIFFNTGDLLVCDDQGFLRFHDRTGDTFRWKGENVATTEVAEALEALHFLQEVNVYGVAVPGHEGRAGMAALVLRPPHSLDLVQLYTHVSENLPPYAQPRFLRLQESLATTETFKQQKVRMAKEGFDPSTLSDPLYILDQAGGAYLPLTPARYSALLAGDLRI", "length": 672, "header": "tr|F1SFW5-1|F1SFW5_PIG Isoform 1 of long-chain-fatty-acid--CoA ligase OS=Sus scrofa OX=9823 GN=SLC27A3 PE=1 SV=3 CANONICAL=F1SFW5-1" }, "isoforms": [ { "isoform_ac": "F1SFW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SFW5/entry#F1SFW5-1", "sequence": { "sequence": "MAAFLLLPLLLLLPLLLLLPKLRLWPQLRWLAADLAFTVRALRCKRVLRARALAAAAANPEGPEGGCSLAWRLAQLAQQRPAHTFLIHGARRFSYAEAESQSNRAARAFLRARGWDRGSGGGGGPRGAGESQWAAAGSGAARAGREGDGAAPLAPGATVALLLPACPEFLWLWFGLAKAGLRTAFVPTALRRGPLLHCLRSCGARALVLAAEFLESLEPDLPALRAMGLHLWAAGSETYPAGISDLLAEVSAEVDAPVPGYLSAPENIMDTCLYIFTSGTTGLPKAARISHLKVLQCQGFYQLCGARQEDVIYLALPLYHMSGSLLGIVGCLGIGATVVLKSKFSAGQFWEDCQQHRVTVFQYIGELCRYLVNQPPNQAEHGHKVRMAVGSGLRPDTWERFVRRFGPLRVLETYGLTEGNVATFNYTGQRGAVGRASWLYKHVFPFSLIRYDVTTGEPVRNTRGHCVATSPGEPGLLVAPVSQQSPFLGYAGGPELAQGKLLKDVFRPGDIFFNTGDLLVCDDQGFLRFHDRTGDTFRWKGENVATTEVAEALEALHFLQEVNVYGVAVPGHEGRAGMAALVLRPPHSLDLVQLYTHVSENLPPYAQPRFLRLQESLATTETFKQQKVRMAKEGFDPSTLSDPLYILDQAGGAYLPLTPARYSALLAGDLRI", "length": 672, "header": "tr|F1SFW5-1|F1SFW5_PIG Isoform 1 of long-chain-fatty-acid--CoA ligase OS=Sus scrofa OX=9823 GN=SLC27A3 PE=1 SV=3 CANONICAL=F1SFW5-1" }, "locus": { "chromosome": "4", "start_pos": 95903381, "end_pos": 95898944, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007197.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007197.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007004.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007004.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157568", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157568", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZJA9-1", "protein_name": "long-chain-fatty-acid--CoA ligase", "gene_name": "Slc27a3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALLLLLPLLLLLPLLLKLDLWPQLRWLRADLAFTVRALRCKRALRARALAAAAADPESPEGGCSLAWRLAHLAREQPTRTFLIYGARCFSYAEAESESNRIARAFLRARGWTAGGRGSGRGSTEEDARVAPAAGDPAAGGTTAPPLAPGATVALLLPAGPEFLWLWFGLAKAGLRTAFVPSALRRGPLLHCLRSCGASAVVLATEFLESLEPDLPALRAMGLHLWATGPGTNLAGISNLLSEAATQVDEPVPGYLSAPQNIMDTCLYIFTSGTTGLPKAARVSHLKVLQCQGFYQLCGVHQEDVIYLALPLYHMSGSLLGIVGCLGIGATVVLKPKFSASQFWEDCQRHGVTVFQYIGELCRYLVNQPPSKAECGHKVRLAVGSGLRPDTWDRFVRRFGPLQILETYGATEGNVATFNYTGQQGAVGRASWLYKHIFPFSLIRYDVMTGEPIRNAQGHCMAASPGEPGLLVAPVSQESPFLGYAGAPELAQEKLLKDVFRPGDIFFNTGDLLVCDEQGFLHFHDRTGDTFRWKGENVATTEVAEVLEALDFLQEVNIYGVTVPGHEGRAGMAALALRPPQALDLVQLYTHVSENLPPYARPRFLRLQESLATTETFKQQKVRMANEGFDPSALSDPLYVLDQDKGAYLPLTPARYNALLSGDLRI", "length": 667 }, "evidence": [ { "id": "F1SFW5", "url": "https://omabrowser.org/oma/group/F1SFW5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MIU7-1", "protein_name": "long-chain-fatty-acid--CoA ligase", "gene_name": "SLC27A3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASLLLLLLLLLLLPLLLLPLRIWSRLRWLAADLAFTMRALRCKRALRARALAAAAADPEGPEGGCSLAWRLAQLARQRPAHTFLIHGAQRFSYAEAERHSNRAARAFLRARGWDGGLGGGGTGGAGEGERAAHCARDQAAGSGAARAVREGDGAAPLAPGATVALLLPACPEFLWLWFGLAKAGLRTAFVPTALRRGPLQHCLRSCGARALVLAPEFLESLEPDLPALRAMGLHLWTVGSDTRPAGISDFLAEASAEVDGPVPGYLSAPQNMTDTCLYIFTSGTTGLPKAARISHLKILQCQAFYQLCGAHQEDVIYLALPLYHMSGSLLGIVGCLGIGATVVLKSKFSAGQFWEDCQQHRVTVFQYIGELCRYLVNQPPNKAERGHKVRLVVGSGLRPDTWERFVRRFGPLQVLETYGLTEGNVATFNYTGQQGAVGRASWLYKHVFPFSLIRYDVTTGEPVRDTQGHCVATSPGEPGLLVAPVSQQSPFLGYAGGPELARGKLLKHVFQPGDVFFNTGDLLVCDNQGFLRFHDRTGDTFRWKGENVATTEVAEALEALDFLQEVNVYGVTVPGHEGRAGMAALALRPPHSLDLVQLYAHVSENLPPYARPRFLRLQESLATTETFKQQKVRMAKEGFDPSTLSDPLYILDQAGGAYLPLTPARYSALLAGDLRI", "length": 677 }, "evidence": [ { "id": "F1SFW5", "url": "https://omabrowser.org/oma/group/F1SFW5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HC13-1", "protein_name": "long-chain-fatty-acid--CoA ligase", "gene_name": "Slc27a3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVLLLLLPLLLLLPLLLKLDLWPQLRWLLADLAFTVRALRCKRALRDRALAAAAADPESPEGGCSLAWRLTHLARERPTHTFLIHGARRFSYADAERESNRAARAFLLARGWAGGRGGSGTGSTEEGAHAAASAVGDSAAGGGTTAPALVPGATVALLLPAGPEFLWLWFGLAKAGLRTAFVPTSLRRGPLLHCLRSCCASALVLAPEFLESLEPDLPAMRAMGLHLWATGPETHLAGISNFLSEAAAQVDEPVPGYLSAPQSIMDTCLYIFTSGTTGLPKAARISHLKVLQCQGFYQLCGVHQEDVIYLALPLYHMSGSLLGIVGCLGIGATVVLKPKFSASQFWEDCQKHGVTVFQYIGELCRYLVNQPPSQAEHGHKVRLAVGSGLRPDTWERFVRRFGPLQILETYGMTEGNVATFNYTGQQGAVGRASWLYKHVFPFSLIRYDVMTGEPIRNAQGHCVATSPDEPGLLVAPVSQQSPFLGYAGAPELAQGKLLKDVFRPGDVFFNTGDLLVCDKQGFLHFHDRTGDTFRWKGENVATTEVAEVLEALDFLQEVNVYGVTVPGHEGRAGMAALALRPPQALDLVQLYVHVSDNLPPYARPRFLRLQETLATTETFKQQKVRMAAEGFDPSVLSDPLYILDQDVGAYLPLTPARFNALLSGDIRI", "length": 669 }, "evidence": [ { "id": "F1SFW5", "url": "https://omabrowser.org/oma/group/F1SFW5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O88561-1", "protein_name": "Long-chain fatty acid transport protein 3", "gene_name": "Slc27a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAALLLLLPLLLLLPLLLKLDVWPQLRWLPADLAFTVRALRCKRALRARALAAAAADPESSESGCSLAWRLAYLAREQPTHTFLIHGAQRFSYAEAERESNRIARAFLRARGWTGGRRGSGRGSTEEGARVAPPAGDAAARGTTAPPLAPGATVALLLPAGPDFLWIWFGLAKAGLRTAFVPTALRRGPLLHCLRSCGASALVLATEFLESLEPDLPALRAMGLHLWATGPETNVAGISNLLSEAADQVDEPVPGYLSAPQNIMDTCLYIFTSGTTGLPKAARISHLKVLQCQGFYHLCGVHQEDVIYLALPLYHMSGSLLGIVGCLGIGATVVLKPKFSASQFWDDCQKHRVTVFQYIGELCRYLVNQPPSKAECDHKVRLAVGSGLRPDTWERFLRRFGPLQILETYGMTEGNVATFNYTGRQGAVGRASWLYKHIFPFSLIRYDVMTGEPIRNAQGHCMTTSPGEPGLLVAPVSQQSPFLGYAGAPELAKDKLLKDVFWSGDVFFNTGDLLVCDEQGFLHFHDRTGDTIRWKGENVATTEVAEVLETLDFLQEVNIYGVTVPGHEGRAGMAALALRPPQALNLVQLYSHVSENLPPYARPRFLRLQESLATTETFKQQKVRMANEGFDPSVLSDPLYVLDQDIGAYLPLTPARYSALLSGDLRI", "length": 667 }, "evidence": [ { "id": "F1SFW5", "url": "https://omabrowser.org/oma/group/F1SFW5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5K4L6-1", "protein_name": "Long-chain fatty acid transport protein 3", "gene_name": "SLC27A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAALLLLPLLLLLPLLLLKLHLWPQLRWLPADLAFAVRALCCKRALRARALAAAAADPEGPEGGCSLAWRLAELAQQRAAHTFLIHGSRRFSYSEAERESNRAARAFLRALGWDWGPDGGDSGEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGGGAAAPLSPGATVALLLPAGPEFLWLWFGLAKAGLRTAFVPTALRRGPLLHCLRSCGARALVLAPEFLESLEPDLPALRAMGLHLWAAGPGTHPAGISDLLAEVSAEVDGPVPGYLSSPQSITDTCLYIFTSGTTGLPKAARISHLKILQCQGFYQLCGVHQEDVIYLALPLYHMSGSLLGIVGCMGIGATVVLKSKFSAGQFWEDCQQHRVTVFQYIGELCRYLVNQPPSKAERGHKVRLAVGSGLRPDTWERFVRRFGPLQVLETYGLTEGNVATINYTGQRGAVGRASWLYKHIFPFSLIRYDVTTGEPIRDPQGHCMATSPGEPGLLVAPVSQQSPFLGYAGGPELAQGKLLKDVFRPGDVFFNTGDLLVCDDQGFLRFHDRTGDTFRWKGENVATTEVAEVFEALDFLQEVNVYGVTVPGHEGRAGMAALVLRPPHALDLMQLYTHVSENLPPYARPRFLRLQESLATTETFKQQKVRMANEGFDPSTLSDPLYVLDQAVGAYLPLTTARYSALLAGNLRI", "length": 683 }, "evidence": [ { "id": "F1SFW5", "url": "https://omabrowser.org/oma/group/F1SFW5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "long-chain fatty acid metabolic process", "id": "GO:0001676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001676", "evidence": [ { "database": "UniProtKB", "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ], "pmid": "" }, { "name": "fatty acid transport", "id": "GO:0015908", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015908", "evidence": [ { "database": "UniProtKB", "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "long-chain fatty acid-CoA ligase activity", "id": "GO:0004467", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004467", "evidence": [ { "database": "UniProtKB", "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ], "pmid": "" }, { "name": "very long-chain fatty acid-CoA ligase activity", "id": "GO:0031957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031957", "evidence": [ { "database": "UniProtKB", "id": "F1SFW5", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 425, "end_pos": 427, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "33639", "name": "", "equation": "tetracosanoate + ATP + CoA = tetracosanoyl-CoA + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "33639", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/33639" } ] }, { "id": "54536", "name": "", "equation": "a very long-chain fatty acid + ATP + CoA = a very long-chain fatty acyl-CoA + AMP + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "54536", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/54536" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" }, { "id": "PF13193", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13193" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AMP-binding enzyme C-terminal", "eco_id": "ECO_0000259", "start_pos": 548, "end_pos": 624, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SFW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFW5" }, { "id": "PF00501", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00501" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AMP-dependent synthetase/ligase", "eco_id": "ECO_0000259", "start_pos": 154, "end_pos": 435, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 425, "end_pos": 427 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFX3-1", "uniprot_ac": "F1SFX3", "uniprot_id": "F1SFX3_PIG", "mass": { "chemical_mass": 26440.0, "monoisotopic_mass": 26440.0 }, "refseq": { "ac": "XP_003122978", "name": "lysoplasmalogenase-like protein TMEM86A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122978" }, "gene_names": [ { "name": "TMEM86A", "type": "recommended", "evidence": [ { "id": "F1SFX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFX3" } ] }, { "name": "TMEM86A", "type": "synonym", "evidence": [ { "id": "XP_003122978", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122978" } ] } ], "protein_names": [ { "name": "lysoplasmalogenase", "type": "recommended", "evidence": [ { "id": "F1SFX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFX3/entry#names_and_taxonomy" } ] }, { "name": "3.3.2.2", "type": "synonym", "evidence": [ { "id": "F1SFX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFX3/entry#names_and_taxonomy" } ] }, { "name": "lysoplasmalogenase-like protein TMEM86A", "type": "synonym", "evidence": [ { "id": "XP_003122978", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122978" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFX3", "url": "https://www.uniprot.org/uniprotkb/F1SFX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM86A", "url": "https://www.uniprot.org/uniprotkb/F1SFX3", "locus": { "chromosome": "2", "start_pos": 40545776, "end_pos": 40550843, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013360", "url": "https://www.ensembl.org/id/ENSSSCG00000013360" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013360", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013360", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523718", "url": "https://www.ncbi.nlm.nih.gov/gene/100523718", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012506", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012506", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523718", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523718", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LMFGITH", "url": "https://omabrowser.org/oma/group/LMFGITH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFX3", "url": "https://www.orthodb.org/?gene=F1SFX3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31885", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31885", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31885:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31885:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07947", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07947", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122978", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16905", "url": "https://www.rhea-db.org/rhea/16905", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "22544", "url": "https://www.rhea-db.org/rhea/22544", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFX3", "url": "https://www.uniprot.org/uniprotkb/F1SFX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSPVTVVKSEGPKLVPFFKAICVYFVLWLPTSSPSWISALIKCLPIFCLWLFLLAHGLGFLLAHPSATRIFVGLVFSALGDAFLIWQDQGYFVHGLLMFAVTHMFYTSAFGMRPLALRTGLVMAVLACLCYAFLYPGLSGAFTYLVGIYVALIGFMGWRAMAGLQLVGAAWRWTELAAGSGALLFIISDLIIALNKFCFPVPYSRALIMSTYYAAQMLIALSAVESREPVEDYRLSKAE", "length": 240, "header": "tr|F1SFX3-1|F1SFX3_PIG Isoform 1 of lysoplasmalogenase OS=Sus scrofa OX=9823 GN=TMEM86A PE=3 SV=1 CANONICAL=F1SFX3-1" }, "isoforms": [ { "isoform_ac": "F1SFX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SFX3/entry#F1SFX3-1", "sequence": { "sequence": "MVSPVTVVKSEGPKLVPFFKAICVYFVLWLPTSSPSWISALIKCLPIFCLWLFLLAHGLGFLLAHPSATRIFVGLVFSALGDAFLIWQDQGYFVHGLLMFAVTHMFYTSAFGMRPLALRTGLVMAVLACLCYAFLYPGLSGAFTYLVGIYVALIGFMGWRAMAGLQLVGAAWRWTELAAGSGALLFIISDLIIALNKFCFPVPYSRALIMSTYYAAQMLIALSAVESREPVEDYRLSKAE", "length": 240, "header": "tr|F1SFX3-1|F1SFX3_PIG Isoform 1 of lysoplasmalogenase OS=Sus scrofa OX=9823 GN=TMEM86A PE=3 SV=1 CANONICAL=F1SFX3-1" }, "locus": { "chromosome": "2", "start_pos": 40550643, "end_pos": 40546912, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014591.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014591.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014196.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014196.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFX3", "url": "https://www.uniprot.org/uniprotkb/F1SFX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523718", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523718", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U4R3-1", "protein_name": "lysoplasmalogenase", "gene_name": "TMEM86A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVSPVTVVKSEGPKLVPFFKATCVYFVLWLPTSSPSWFSALIKCLPIFCLWVFLLAHGINFLVAHRSASRILAGLIFSAVGDAFLIWQEQGYFIHGLLMFAITHILYSSAFGMKPLDLKAGLMMGLISSSCYAFLYSYLSGPFTYLVAVYIALIGFMGWRAVAGMQLCNDLWTWTKLSACIGAMLFMVSDLTIAVNKFCFPVPYSRVIIMATYYAAQMLIALSAVESRDEEDFKKRS", "length": 237 }, "evidence": [ { "id": "F1SFX3", "url": "https://omabrowser.org/oma/group/F1SFX3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZI62-1", "protein_name": "lysoplasmalogenase", "gene_name": "Tmem86a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSPVTVVKSEGPKLVPFFKATCVYFVLWLPSSSPSWFSALIKCLPIFCLWLFLLAHGFRFLLAHPSASLIFAGLVFSAVGDAFLIWQDSGYFEHGLLMFAVAHILYALAFGMRPLALRTGLVIGVLSGLCYALLYPRLSGAFTYLVGVYVTLISFMGWRAMAGLRLGGAAWRWTELAAGVGALLFILSDLTIALNKFCFPVPYSRALIMSTYYAAQMFIALSAVESREPVEDYRLSKAA", "length": 240 }, "evidence": [ { "id": "F1SFX3", "url": "https://omabrowser.org/oma/group/F1SFX3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N2M4-1", "protein_name": "Lysoplasmalogenase TMEM86A", "gene_name": "TMEM86A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVSPVTVVKSEGPKLVPFFKATCVYFVLWLPSSSPSWVSTLIKCLPIFCLWLFLLAHGLGFLLAHPSATRIFVGLVFSAVGDAFLIWQDQGYFVHGLLMFAVTHMFYASAFGMQPLALRTGLVMAALSGLCYALLYPCLSGAFTYLVGVYVALIGFMGWRAMAGLRLAGADWRWTELAAGSGALFFIISDLTIALNKFCFPVPYSRALIMSTYYVAQMLVALSAVESREPVEHYRLTKAN", "length": 240 }, "evidence": [ { "id": "F1SFX3", "url": "https://omabrowser.org/oma/group/F1SFX3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D8N3-1", "protein_name": "Lysoplasmalogenase TMEM86A", "gene_name": "Tmem86a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSPVTVVKSEGPKLVPFFKATCVYFVLWLPSSSPSWVSALIKCLPIFCLWLFLLAHGVRFLLAHPSASLIFVGLVFSAVGDAFLIWQDHGYFEHGLLMFAVAHILYAAAFGMRPLALRTGLVIGVLSGLCYALLYPGLSGAFTYLVGVYVALISFMGWRAMAGLRLVGAAWRWTELAAGGGALLFILSDLTIALNKFCFPVPYSRALIMSTYYAAQMLIALSAVESREPVGEDYRLSKAD", "length": 241 }, "evidence": [ { "id": "F1SFX3", "url": "https://omabrowser.org/oma/group/F1SFX3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "alkenylglycerophosphocholine hydrolase activity", "id": "GO:0047408", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047408", "evidence": [ { "database": "UniProtKB", "id": "F1SFX3", "url": "https://www.uniprot.org/uniprotkb/F1SFX3" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SFX3", "url": "https://www.uniprot.org/uniprotkb/F1SFX3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SFX3", "url": "https://www.uniprot.org/uniprotkb/F1SFX3" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SFX3", "url": "https://www.uniprot.org/uniprotkb/F1SFX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16905", "name": "", "equation": "a 1-O-(1Z-alkenyl)-sn-glycero-3-phosphoethanolamine + H2O = a 2,3-saturated aldehyde + sn-glycero-3-phosphoethanolamine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16905", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16905" } ] }, { "id": "22544", "name": "", "equation": "a 1-O-(1Z-alkenyl)-sn-glycero-3-phosphocholine + H2O = a 2,3-saturated aldehyde + sn-glycerol 3-phosphocholine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "22544", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/22544" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFY4-1", "uniprot_ac": "F1SFY4", "uniprot_id": "F1SFY4_PIG", "mass": { "chemical_mass": 37396.0, "monoisotopic_mass": 37396.0 }, "refseq": { "ac": "XP_003122964", "name": "homeobox protein DBX1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122964" }, "gene_names": [ { "name": "DBX1", "type": "recommended", "evidence": [ { "id": "F1SFY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFY4" } ] }, { "name": "DBX1", "type": "synonym", "evidence": [ { "id": "XP_003122964", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122964" } ] } ], "protein_names": [ { "name": "Homeobox protein DBX1", "type": "recommended", "evidence": [ { "id": "F1SFY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFY4/entry#names_and_taxonomy" } ] }, { "name": "Developing brain homeobox protein 1", "type": "synonym", "evidence": [ { "id": "F1SFY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFY4/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein DBX1", "type": "synonym", "evidence": [ { "id": "XP_003122964", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122964" } ] } ], "function": [ { "annotation": "Could have a role in patterning the central nervous system during embryogenesis. Has a key role in regulating the distinct phenotypic features that distinguish two major classes of ventral interneurons, V0 and V1 neurons. Regulates the transcription factor profile, neurotransmitter phenotype, intraspinal migratory path and axonal trajectory of V0 neurons, features that differentiate them from an adjacent set of V1 neurons.", "evidence": [ { "database": "UniProtKB", "id": "F1SFY4", "url": "https://www.uniprot.org/uniprotkb/F1SFY4#function" }, { "database": "UniProtKB", "id": "ARBA00057624", "url": "https://www.uniprot.org/uniprotkb/ARBA00057624#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFY4", "url": "https://www.uniprot.org/uniprotkb/F1SFY4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DBX1", "url": "https://www.uniprot.org/uniprotkb/F1SFY4", "locus": { "chromosome": "2", "start_pos": 39234969, "end_pos": 39229356, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013350", "url": "https://www.ensembl.org/id/ENSSSCG00000013350" } ] } } ], "crossref": [ { "id": "F1SFY4", "url": "https://alphafold.ebi.ac.uk/entry/F1SFY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013350", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013350", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520887", "url": "https://www.ncbi.nlm.nih.gov/gene/100520887", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051662", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051662", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520887", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520887", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RHSLAYH", "url": "https://omabrowser.org/oma/group/RHSLAYH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SFY4", "url": "https://www.orthodb.org/?gene=F1SFY4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24331", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24331", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24331:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24331:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122964", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122964", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFY4", "url": "https://www.uniprot.org/uniprotkb/F1SFY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFY4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMSPPRQGAAAALTDSGASDLGSPGPGSRRGGASQTAVSPASEPTFLKFGVNAILSSAPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGDDEEDDEGRGSPRHRLVYHASPDPRHLRVERLEGPLPPSPAHSGSPDKPSDFSDSEEDEEGEEEEITVS", "length": 343, "header": "tr|F1SFY4-1|F1SFY4_PIG Isoform 1 of Homeobox protein DBX1 OS=Sus scrofa OX=9823 GN=DBX1 PE=3 SV=1 CANONICAL=F1SFY4-1" }, "isoforms": [ { "isoform_ac": "F1SFY4-1", "url": "https://www.uniprot.org/uniprotkb/F1SFY4/entry#F1SFY4-1", "sequence": { "sequence": "MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMSPPRQGAAAALTDSGASDLGSPGPGSRRGGASQTAVSPASEPTFLKFGVNAILSSAPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGDDEEDDEGRGSPRHRLVYHASPDPRHLRVERLEGPLPPSPAHSGSPDKPSDFSDSEEDEEGEEEEITVS", "length": 343, "header": "tr|F1SFY4-1|F1SFY4_PIG Isoform 1 of Homeobox protein DBX1 OS=Sus scrofa OX=9823 GN=DBX1 PE=3 SV=1 CANONICAL=F1SFY4-1" }, "locus": { "chromosome": "2", "start_pos": 39233601, "end_pos": 39229584, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014579.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014579.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014184.1", "url": "https://www.ensembl.org/id/ENSSSCP00000014184.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFY4", "url": "https://www.uniprot.org/uniprotkb/F1SFY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520887", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520887", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A5PKG8-1", "protein_name": "Homeobox protein DBX1", "gene_name": "DBX1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRGSVPTPSMSPPRPGAPAALTDTGASDLGSPGPGSRRGGSPQTAVSPASEPTFLKFGVNAILSSAPRTETSPTLLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGDDDDEEDEGPGSPRPRLVYHAAPADPRHLRDPRLEAPLPTSPARSGSPDKASDFSDSEDDEEGEEEITVS", "length": 345 }, "evidence": [ { "id": "F1SFY4", "url": "https://omabrowser.org/oma/group/F1SFY4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A6NMT0-1", "protein_name": "Homeobox protein DBX1", "gene_name": "DBX1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNAILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEEEEGEEQEEITVS", "length": 343 }, "evidence": [ { "id": "F1SFY4", "url": "https://omabrowser.org/oma/group/F1SFY4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P52950-1", "protein_name": "Homeobox protein DBX1", "gene_name": "Dbx1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPTYLSRSIPAASLSPPSQEAPAALADSGTSDLGSPGSGSRRGSSPQTALSPASEPTFLKFGVNAILSSAPRRETSPALLQSPPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKTFQKQKYISKPDRKKLASKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGDEEEDNPGARLAYHAPADPRHLLEGPLPASPAHSSSPGKPSDFSDSDEDEEGEEDEEITVS", "length": 335 }, "evidence": [ { "id": "F1SFY4", "url": "https://omabrowser.org/oma/group/F1SFY4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5NSW5-1", "protein_name": "Homeobox protein DBX1", "gene_name": "Dbx1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMFPGLLAPPAGYPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPTYLPRSIPTASLSPPRQEAPTALADSGTSDLGSPGSGSRRGSSPQTALSPASEPTFLKFGVNAILSSAPRRETSPALLQSPPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKTFQKQKYISKPDRKKLASKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGDEEEDSPGASLAYHAPPDPRHLLEGPLPASPAHSSSPGKPSDFSDSDEDEEGEEDEEITVS", "length": 335 }, "evidence": [ { "id": "F1SFY4", "url": "https://omabrowser.org/oma/group/F1SFY4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SFY4", "url": "https://www.uniprot.org/uniprotkb/F1SFY4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SFY4", "url": "https://www.uniprot.org/uniprotkb/F1SFY4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SFY4", "url": "https://www.uniprot.org/uniprotkb/F1SFY4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SFY4", "url": "https://www.uniprot.org/uniprotkb/F1SFY4" } ], "pmid": "" }, { "name": "cell differentiation in spinal cord", "id": "GO:0021515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021515", "evidence": [ { "database": "UniProtKB", "id": "F1SFY4", "url": "https://www.uniprot.org/uniprotkb/F1SFY4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFY4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 343, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFY4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFY4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SFY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFY4" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 179, "end_pos": 239, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SFZ7-1", "uniprot_ac": "F1SFZ7", "uniprot_id": "F1SFZ7_PIG", "mass": { "chemical_mass": 67957.0, "monoisotopic_mass": 67957.0 }, "refseq": { "ac": "XP_003122956", "name": "sodium-coupled monocarboxylate transporter 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122956" }, "gene_names": [ { "name": "SLC5A12", "type": "recommended", "evidence": [ { "id": "F1SFZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7" } ] }, { "name": "SLC5A12", "type": "synonym", "evidence": [ { "id": "XP_003122956", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122956" } ] } ], "protein_names": [ { "name": "Solute carrier family 5 member 12", "type": "synonym", "evidence": [ { "id": "F1SFZ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7/entry#names_and_taxonomy" } ] }, { "name": "sodium-coupled monocarboxylate transporter 2", "type": "synonym", "evidence": [ { "id": "XP_003122956", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122956" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SFZ7", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC5A12", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7", "locus": { "chromosome": "2", "start_pos": 33613549, "end_pos": 33561008, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013338", "url": "https://www.ensembl.org/id/ENSSSCG00000013338" } ] } } ], "crossref": [ { "id": "F1SFZ7", "url": "https://alphafold.ebi.ac.uk/entry/F1SFZ7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013338", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013338", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519011", "url": "https://www.ncbi.nlm.nih.gov/gene/100519011", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519011", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519011", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SFZ7", "url": "https://www.orthodb.org/?gene=F1SFZ7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR42985", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42985", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42985:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42985:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00474", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00474", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-428643", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-428643", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003122956", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122956", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SFZ7", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFZ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVKNFAVWDYVVFAALFIVSSGIGVFFAIKERKKATSREFLVGGRQMSFGPVALSLTASFMSAVTVLGTPSEVYRFGASFSLFFIPYAIVIIFTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVIYILQTILYTGVVVYAPALALNQVTGFDLWGSVFATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSARAGGLSNVLEQSANGSRLKLFDFDVDPLRRHTFWTISVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYFNLLGLWIILLCAVFSGLIMYSYFKDCDPWTSGTISAPDQLMPYFVLEIFPTMPGLPGLFVACAFSGTLSTVAASINALATVTFEDFVKIWFPHLSDKLSTWISKGLCVLFGVLCTTMAVVASFMGSVVQAALSIHGMCGGPMLGLFSLGILFPFVNWKGALGGLLTGVTLSFWVTIGAFIYPAPDSKTWPLPLSTEQCDLSNVTESVPLALSRRPAIAETWYSLSYLYYSAVGCLGCMAAGVIISFLTGRQRGKDVQPLLIRPVCNLFCFWSKKYKTLCWCGVQHDSGTEQENLENGNAWKQGAESVLQNGLRRESLVPVPGYDPNSKSYDNVALEKITHF", "length": 619, "header": "tr|F1SFZ7-1|F1SFZ7_PIG Isoform 1 of Solute carrier family 5 member 12 OS=Sus scrofa OX=9823 GN=SLC5A12 PE=3 SV=1 CANONICAL=F1SFZ7-1" }, "isoforms": [ { "isoform_ac": "F1SFZ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7/entry#F1SFZ7-1", "sequence": { "sequence": "MEVKNFAVWDYVVFAALFIVSSGIGVFFAIKERKKATSREFLVGGRQMSFGPVALSLTASFMSAVTVLGTPSEVYRFGASFSLFFIPYAIVIIFTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVIYILQTILYTGVVVYAPALALNQVTGFDLWGSVFATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSARAGGLSNVLEQSANGSRLKLFDFDVDPLRRHTFWTISVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYFNLLGLWIILLCAVFSGLIMYSYFKDCDPWTSGTISAPDQLMPYFVLEIFPTMPGLPGLFVACAFSGTLSTVAASINALATVTFEDFVKIWFPHLSDKLSTWISKGLCVLFGVLCTTMAVVASFMGSVVQAALSIHGMCGGPMLGLFSLGILFPFVNWKGALGGLLTGVTLSFWVTIGAFIYPAPDSKTWPLPLSTEQCDLSNVTESVPLALSRRPAIAETWYSLSYLYYSAVGCLGCMAAGVIISFLTGRQRGKDVQPLLIRPVCNLFCFWSKKYKTLCWCGVQHDSGTEQENLENGNAWKQGAESVLQNGLRRESLVPVPGYDPNSKSYDNVALEKITHF", "length": 619, "header": "tr|F1SFZ7-1|F1SFZ7_PIG Isoform 1 of Solute carrier family 5 member 12 OS=Sus scrofa OX=9823 GN=SLC5A12 PE=3 SV=1 CANONICAL=F1SFZ7-1" }, "locus": { "chromosome": "2", "start_pos": 33610866, "end_pos": 33561313, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014566.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014566.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014171.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014171.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFZ7", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519011", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519011", "resource": "KEGG Pathway" }, { "id": "R-SSC-428643", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-428643", "resource": "Reactome", "description": "Organic anion transport by SLC5/17/25 transporters" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SFZ7", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "symporter activity", "id": "GO:0015293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015293", "evidence": [ { "database": "UniProtKB", "id": "F1SFZ7", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7" } ], "pmid": "" }, { "name": "lactate transmembrane transporter activity", "id": "GO:0015129", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015129", "evidence": [ { "database": "UniProtKB", "id": "F1SFZ7", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sodium ion transport", "id": "GO:0006814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006814", "evidence": [ { "database": "UniProtKB", "id": "F1SFZ7", "url": "https://www.uniprot.org/uniprotkb/F1SFZ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SFZ7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 619, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SFZ7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SFZ7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 219, "end_pos": 221 }, { "start_pos": 256, "end_pos": 258 }, { "start_pos": 480, "end_pos": 482 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG06-1", "uniprot_ac": "F1SG06", "uniprot_id": "F1SG06_PIG", "mass": { "chemical_mass": 31471.0, "monoisotopic_mass": 31471.0 }, "refseq": { "ac": "NP_001230559", "name": "ciliary microtubule inner protein 2B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230559" }, "gene_names": [ { "name": "CIMIP2B", "type": "recommended", "evidence": [ { "id": "F1SG06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG06" } ] }, { "name": "CIMIP2B", "type": "synonym", "evidence": [ { "id": "NP_001230559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230559" } ] }, { "name": "FAM166B", "type": "synonym", "evidence": [ { "id": "NP_001230559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230559" } ] } ], "protein_names": [ { "name": "Ciliary microtubule inner protein 2B", "type": "recommended", "evidence": [ { "id": "F1SG06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG06/entry#names_and_taxonomy" } ] }, { "name": "ciliary microtubule inner protein 2B", "type": "synonym", "evidence": [ { "id": "NP_001230559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230559" } ] }, { "name": "family with sequence similarity 166 member B", "type": "synonym", "evidence": [ { "id": "NP_001230559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230559" } ] } ], "function": [ { "annotation": "Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia axoneme, which is required for motile cilia beating.", "evidence": [ { "database": "UniProtKB", "id": "F1SG06", "url": "https://www.uniprot.org/uniprotkb/F1SG06#function" }, { "database": "UniProtKB", "id": "ARBA00035003", "url": "https://www.uniprot.org/uniprotkb/ARBA00035003#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG06", "url": "https://www.uniprot.org/uniprotkb/F1SG06" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CIMIP2B", "url": "https://www.uniprot.org/uniprotkb/F1SG06", "locus": { "chromosome": "1", "start_pos": 236322897, "end_pos": 236324981, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005309", "url": "https://www.ensembl.org/id/ENSSSCG00000005309" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005309", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005309", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156839", "url": "https://www.ncbi.nlm.nih.gov/gene/100156839", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "9CPC", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CPC&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR018902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156839", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156839", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CCGQDLT", "url": "https://omabrowser.org/oma/group/CCGQDLT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SG06", "url": "https://www.orthodb.org/?gene=F1SG06", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22146", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22146", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22146:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22146:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00009cpc", "url": "https://www.rcsb.org/structure/pdb_00009cpc", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CPC", "url": "https://www.rcsb.org/structure/9CPC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF10629", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10629", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230559", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230559", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SG06", "url": "https://www.uniprot.org/uniprotkb/F1SG06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG06-1", "url": "https://www.uniprot.org/uniprotkb/F1SG06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMASTFIPGLNPKNPHYIPGYTGHCPLLRFSMGQTYGQTTGQLLRGSPGLAWPPAHRTLLPPIRSPRSPEIPRRSLPVRRGHERLSSSMIPGYTGFVPQAQFIFAKNCNQVWAEALNDFTQWYGGQGSQELPKEAKGEKDMEKDQQPKLEAEVEAENEPELGQEVEQASPYSMDDRDPRKFFMSGFTGYVPRARFLFGSSFPVLSNQALQEFDQMKSQGRSQKDPKHLPPLSRTYPHNLGLLPKYGGYVPGYKFQFGRTYGHLTHDALGLSTLQKQLLA", "length": 280, "header": "tr|F1SG06-1|F1SG06_PIG Isoform 1 of Ciliary microtubule inner protein 2B OS=Sus scrofa OX=9823 GN=CIMIP2B PE=1 SV=2 CANONICAL=F1SG06-1" }, "isoforms": [ { "isoform_ac": "F1SG06-1", "url": "https://www.uniprot.org/uniprotkb/F1SG06/entry#F1SG06-1", "sequence": { "sequence": "MTMASTFIPGLNPKNPHYIPGYTGHCPLLRFSMGQTYGQTTGQLLRGSPGLAWPPAHRTLLPPIRSPRSPEIPRRSLPVRRGHERLSSSMIPGYTGFVPQAQFIFAKNCNQVWAEALNDFTQWYGGQGSQELPKEAKGEKDMEKDQQPKLEAEVEAENEPELGQEVEQASPYSMDDRDPRKFFMSGFTGYVPRARFLFGSSFPVLSNQALQEFDQMKSQGRSQKDPKHLPPLSRTYPHNLGLLPKYGGYVPGYKFQFGRTYGHLTHDALGLSTLQKQLLA", "length": 280, "header": "tr|F1SG06-1|F1SG06_PIG Isoform 1 of Ciliary microtubule inner protein 2B OS=Sus scrofa OX=9823 GN=CIMIP2B PE=1 SV=2 CANONICAL=F1SG06-1" }, "locus": { "chromosome": "1", "start_pos": 236324943, "end_pos": 236323069, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005847.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005847.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005702.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005702.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SG06", "url": "https://www.uniprot.org/uniprotkb/F1SG06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural diversity of axonemes across mammalian motile cilia.", "journal": "Nature", "date": "2025", "authors": "Leung Miguel Ricardo, Sun Chen, Zeng Jianwei, Anderson Jacob R, Niu Qingwei, Huang Wei, Noteborn Willem E M, Brown Alan, Zeev-Ben-Mordehai Tzviya, Zhang Rui", "evidence": [ { "database": "UniProtKB", "id": "F1SG06", "url": "https://www.uniprot.org/uniprotkb/F1SG06" } ], "reference": [ { "type": "PubMed", "id": "39743588", "url": "https://glygen.org/publication/PubMed/39743588" } ] } ], "pathway": [ { "id": "ssc:100156839", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156839", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QIP5-1", "protein_name": "Ciliary microtubule inner protein 2B", "gene_name": "Fam166b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVVNTCIPGLNSQNPHYIPGYTGHCPLLRFSMGQTYGQVTGQLLQGSPGLAWPPAHRTLLPPIQSPRSPVTPRGRLPPRRGHERLSSSIIPGYTGFIPQAQFIFAKNCNQVWAEAMNDFTQRHGQQECHELSKEVKGGKEREKDQEPEAEEPELKQVSPYSMDDRDPQKFFMSGFTGYVPRARFLFGSSFPVLTNQALQEFGQTCSRSRVQKDPKPLSPLPKPNLENLGLLPHYGGYVPGYKFQFGGTFGHLTHDALGLSTTQKQLLA", "length": 269 }, "evidence": [ { "id": "F1SG06", "url": "https://omabrowser.org/oma/group/F1SG06/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6AEA7-1", "protein_name": "Ciliary microtubule inner protein 2B", "gene_name": "Cimip2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMVNTFIPGLSPQNPHYIPGAKAGGRDTQAEGSGVRVPGLGRSSCSDHTGPVPSRYTGHCPLLRFSVGQTYGQVTGQLLRGPPGLAWPPAHRTLLPPIRSPRSPVISRRRPPPRRGHERLSSSVVPGYTGFIPQARFIFAKNCNQVWAEAMSDFTQRRGAQESPELQEAKGEEEVERDQGPEAEEPQLKHELAQTSPYSMDDTDPQKFFMSGFTGYVPRARFLFGSSFPVLTNQALQEFGQMCSGGRVQKDPKPLSPLPRPNFQNLGLLPHYGGYVPGYKFQFGGTFGHLTHDALGLSITQKQLLA", "length": 307 }, "evidence": [ { "id": "F1SG06", "url": "https://omabrowser.org/oma/group/F1SG06/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2AIP0-1", "protein_name": "Ciliary microtubule inner protein 2B", "gene_name": "Cimip2b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVVNTSIPGLSGENPHYIPGYTGHCPLLRFSMGQTYGQVTGQLLRGPPGLAWPPAHRTLLPPIQSPRSPVISKGRLPPRRGHERLSSSIIPGYTGFIPRAQFIFAKNCNQVWAEAMSEFTRRHGEQESHQLPDGAKGEREVEEDQLREAEEPPLKQELAHASPYSMDDTDPHKFFMSGFTGYVPRARFLFGSSFPVLTNQALQEFGQMCSRGRAHKDPKPLSPLPRPTFQNLGLLPHYGGYVPGYKFQFGGTFGHLTHDALGLSITQKQLPA", "length": 273 }, "evidence": [ { "id": "F1SG06", "url": "https://omabrowser.org/oma/group/F1SG06/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2RRW4-1", "protein_name": "Ciliary microtubule inner protein 2B", "gene_name": "cimip2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLFPPKFSKVLVTPDPQYIPGYAGYCPQLKYHVGQTYGQLTAKLLTSPEVSHSQRLVLQTSPLSSTEKETASRSQIWWSRHGASRNLETMIPGYTGFVPLRQNYICKTYAETCRDALSEFNQGQAKRLHNASADLSFPVINSVPDFRPRRSNSPLIALSKDPAPYKAPDPWKPPGSPYFMEDSSPHKYFISGFTGYVPKARFLFGTGYPTITNKALIQFSKEMKAGPASLQKYSLQEEDSSNLPLIPTIYPSKTGLLPSYTGHIPGYRFQYGHTFGKLTHNALGHTASQKNAGAIRLS", "length": 299 }, "evidence": [ { "id": "F1SG06", "url": "https://omabrowser.org/oma/group/F1SG06/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A8MTA8-1", "protein_name": "Ciliary microtubule inner protein 2B", "gene_name": "CIMIP2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVASTFIPGLNPQNPHYIPGYTGHCPLLRFSVGQTYGQVTGQLLRGPPGLAWPPVHRTLLPPIRPPRSPEVPRESLPVRRGQERLSSSMIPGYTGFVPRAQFIFAKNCSQVWAEALSDFTHLHEKQGSEELPKEAKGRKDTEKDQVPEPEGQLEEPTLEVVEQASPYSMDDRDPRKFFMSGFTGYVPCARFLFGSSFPVLTNQALQEFGQKHSPGSAQDPKHLPPLPRTYPQNLGLLPNYGGYVPGYKFQFGHTFGHLTHDALGLSTFQKQLLA", "length": 275 }, "evidence": [ { "id": "F1SG06", "url": "https://omabrowser.org/oma/group/F1SG06/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2TBR5-1", "protein_name": "Ciliary microtubule inner protein 2B", "gene_name": "CIMIP2B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASTFIPGLNPQNPHYIPGYTGHCPLLRFSMGQTYGQMTGQLLRGSPGLAWPPAHRTLLPPIQPPRSPEPRRRSLPVRPGHERLSSSMVPGYTGFVPQAQFIFAKNCSQVWAEALNGFTQRNGGQGSQELPKEAKGEKDVEKDQEPKPEVEKEPELGQEAEQASPYSMDDRDPRKFFMSGFTGYVPRARFLFGSSFPVLSNQALQEFGEMKSPGRSQKDPKHLPALSRTYPQHLGLLPKYGGYVPGYKFQFGRTYGHLTQDALGLSTLQKQLLV", "length": 274 }, "evidence": [ { "id": "F1SG06", "url": "https://omabrowser.org/oma/group/F1SG06/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7JRP4-1", "protein_name": "CIMIP2 protein CG18335", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDHAITPEPHLVPGYTGHCAQNRDRVGRTYGRQTHKLLIDPCIYHAPELIVAPIHAKRGLKDYPTEQELKILRTREGLVDSVYRHPILPGYAGFVPNKVSQIGKRYVAAASAGVARHETLMELYRCENRTLRHRDLLESGNGLFDRKINERLLPQTYYRSPLILVTGVSKGIKDETCPPKTEKLCYSKFTSPHFLEDEDADKFIINGYSGHIPMSVTRFGESNKVLTNRALCSFSDYMYKRKRDTWCCGQDLSRPSITCPPVGHFVVYHEDSGMVPNYAGHVPGETYKFGRTYAKTTYDAKRWLEVHKNLTVLPEVANLDYAY", "length": 323 }, "evidence": [ { "id": "F1SG06", "url": "https://omabrowser.org/oma/group/F1SG06/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "axonemal microtubule", "id": "GO:0005879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005879", "evidence": [ { "database": "UniProtKB", "id": "F1SG06", "url": "https://www.uniprot.org/uniprotkb/F1SG06" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG06" }, { "id": "PF10629", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10629" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ciliary microtubule inner protein 2A-C-like", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 45, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG22-1", "uniprot_ac": "F1SG22", "uniprot_id": "F1SG22_PIG", "mass": { "chemical_mass": 44039.0, "monoisotopic_mass": 44039.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "G-protein coupled receptor 143", "type": "recommended", "evidence": [ { "id": "F1SG22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG22/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Receptor for tyrosine, L-DOPA and dopamine. After binding to L-DOPA, stimulates Ca(2+) influx into the cytoplasm, increases secretion of the neurotrophic factor SERPINF1 and relocalizes beta arrestin at the plasma membrane; this ligand-dependent signaling occurs through a G(q)-mediated pathway in melanocytic cells. Its activity is mediated by G proteins which activate the phosphoinositide signaling pathway. Also plays a role as an intracellular G protein-coupled receptor involved in melanosome biogenesis, organization and transport.", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22#function" }, { "database": "UniProtKB", "id": "ARBA00054755", "url": "https://www.uniprot.org/uniprotkb/ARBA00054755#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SG22", "locus": {} } ], "crossref": [ { "id": "F1SG22", "url": "https://alphafold.ebi.ac.uk/entry/F1SG22", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012103", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012103", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15177:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15177:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02101", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02101", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-375280", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375280", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG22-1", "url": "https://www.uniprot.org/uniprotkb/F1SG22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASPRLGTFCCPTRDAATELVLSFQPRAFHALCLGSGALRLALGLLQLLPRRRPAGPGVPSASPPASACILRAAAACDLLGCLGIIVRSSVWLGFPSFVDHISDVNGTDVWPAAFCVGTATWIQLLYSACFWWLFCYAVDAYLVIRRAGLSTILLYHMMAWGLAALLCVEGAFMLYYPSMARCDRGLEHAIPHYVTTYFPLLLVLVANPILFRKTVTAVASLLKGRQGVYTENERRMGAVIKTRFFKIMLVFIICWMSNIINESLLFYLEMQPDISGASLKQVRIAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSVDFQSPRKEIQWDSMTTSAAERAQPSPGGSREPRESPAGGKVRTGGHTSDEALSLLSEGSDASTIEIHITGVSRNGNDVGSVPKAQGDL", "length": 405, "header": "tr|F1SG22-1|F1SG22_PIG Isoform 1 of G-protein coupled receptor 143 OS=Sus scrofa OX=9823 GN= PE=3 SV=5 CANONICAL=F1SG22-1" }, "isoforms": [ { "isoform_ac": "F1SG22-1", "url": "https://www.uniprot.org/uniprotkb/F1SG22/entry#F1SG22-1", "sequence": { "sequence": "MASPRLGTFCCPTRDAATELVLSFQPRAFHALCLGSGALRLALGLLQLLPRRRPAGPGVPSASPPASACILRAAAACDLLGCLGIIVRSSVWLGFPSFVDHISDVNGTDVWPAAFCVGTATWIQLLYSACFWWLFCYAVDAYLVIRRAGLSTILLYHMMAWGLAALLCVEGAFMLYYPSMARCDRGLEHAIPHYVTTYFPLLLVLVANPILFRKTVTAVASLLKGRQGVYTENERRMGAVIKTRFFKIMLVFIICWMSNIINESLLFYLEMQPDISGASLKQVRIAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSVDFQSPRKEIQWDSMTTSAAERAQPSPGGSREPRESPAGGKVRTGGHTSDEALSLLSEGSDASTIEIHITGVSRNGNDVGSVPKAQGDL", "length": 405, "header": "tr|F1SG22-1|F1SG22_PIG Isoform 1 of G-protein coupled receptor 143 OS=Sus scrofa OX=9823 GN= PE=3 SV=5 CANONICAL=F1SG22-1" }, "locus": { "chromosome": "X", "start_pos": 6276639, "end_pos": 6242635, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013238.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013238.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012884.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012884.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-375280", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375280", "resource": "Reactome", "description": "Amine ligand-binding receptors" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" }, { "name": "melanosome membrane", "id": "GO:0033162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033162", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" }, { "name": "melanosome organization", "id": "GO:0032438", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032438", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "L-DOPA receptor activity", "id": "GO:0035643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035643", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" }, { "name": "dopamine binding", "id": "GO:0035240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035240", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" }, { "name": "L-DOPA binding", "id": "GO:0072544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072544", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" }, { "name": "L-tyrosine binding", "id": "GO:0072545", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072545", "evidence": [ { "database": "UniProtKB", "id": "F1SG22", "url": "https://www.uniprot.org/uniprotkb/F1SG22" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG22-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 405, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG22-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG22" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 262, "end_pos": 264 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG25-1", "uniprot_ac": "F1SG25", "uniprot_id": "F1SG25_PIG", "mass": { "chemical_mass": 75564.0, "monoisotopic_mass": 75564.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Anosmin-1", "type": "recommended", "evidence": [ { "id": "F1SG25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG25/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG25", "url": "https://www.uniprot.org/uniprotkb/F1SG25" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SG25", "locus": {} } ], "crossref": [ { "id": "F1SG25", "url": "https://alphafold.ebi.ac.uk/entry/F1SG25", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012101", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012101", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00199", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00199", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042447", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042447", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14131", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14131", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14131:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14131:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00095", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00095", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17869", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17869", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28407", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28407", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SG25", "url": "https://www.uniprot.org/uniprotkb/F1SG25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG25-1", "url": "https://www.uniprot.org/uniprotkb/F1SG25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPGASGAALTLCLWLAASGGCLAAGPGAGAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKASWDLRNQQCQSFCEPLFPKKNYECLTSCEFLKYILSVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATPWQTIAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPAAPPAPANLRLANSTVNSDGSVSVTMVWDLPEEPDIPHHYKVFWSWTVSSKSLVPTKKKRRKTTEGSQNSVTLERLLPNCEYTVELQAIAYWGQTRLKSAKVSLQFTSTHAAHNKQQLGKTRKRVTPIQPPFQRRRPTSLLEMGAPFQDNQLQAKVYWKKTEDPGVSRYHVQWSPEVCAHNESASLEASSALTQENYMILQDLSFACKYKVTVQPTRPKGRLKAETVFFTTPPCSALKGKSHKHVSCPGEAGHIHSRVQAKPENLSASFVVQDVSITGHFSWKMAKATLYQPTGFQVTWAEVTTESRQNSLPNSIISQSQILPADHYVLTVPSLRPATLYRLEVQVLTAAGEGPATIRTFRTPDLPPSAAAAHRPHLKHQHAHHYKPPPERY", "length": 679, "header": "tr|F1SG25-1|F1SG25_PIG Isoform 1 of Anosmin-1 OS=Sus scrofa OX=9823 GN= PE=4 SV=5 CANONICAL=F1SG25-1" }, "isoforms": [ { "isoform_ac": "F1SG25-1", "url": "https://www.uniprot.org/uniprotkb/F1SG25/entry#F1SG25-1", "sequence": { "sequence": "MVPGASGAALTLCLWLAASGGCLAAGPGAGAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQCSKCLEPCKASWDLRNQQCQSFCEPLFPKKNYECLTSCEFLKYILSVKQGDCPAPEKASGFAAACVESCEVDNECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATPWQTIAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPAAPPAPANLRLANSTVNSDGSVSVTMVWDLPEEPDIPHHYKVFWSWTVSSKSLVPTKKKRRKTTEGSQNSVTLERLLPNCEYTVELQAIAYWGQTRLKSAKVSLQFTSTHAAHNKQQLGKTRKRVTPIQPPFQRRRPTSLLEMGAPFQDNQLQAKVYWKKTEDPGVSRYHVQWSPEVCAHNESASLEASSALTQENYMILQDLSFACKYKVTVQPTRPKGRLKAETVFFTTPPCSALKGKSHKHVSCPGEAGHIHSRVQAKPENLSASFVVQDVSITGHFSWKMAKATLYQPTGFQVTWAEVTTESRQNSLPNSIISQSQILPADHYVLTVPSLRPATLYRLEVQVLTAAGEGPATIRTFRTPDLPPSAAAAHRPHLKHQHAHHYKPPPERY", "length": 679, "header": "tr|F1SG25-1|F1SG25_PIG Isoform 1 of Anosmin-1 OS=Sus scrofa OX=9823 GN= PE=4 SV=5 CANONICAL=F1SG25-1" }, "locus": { "chromosome": "X", "start_pos": 5363002, "end_pos": 5165701, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013235.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013235.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012881.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012881.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SG25", "url": "https://www.uniprot.org/uniprotkb/F1SG25" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1SG25", "url": "https://www.uniprot.org/uniprotkb/F1SG25" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SG25", "url": "https://www.uniprot.org/uniprotkb/F1SG25" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SG25", "url": "https://www.uniprot.org/uniprotkb/F1SG25" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SG25", "url": "https://www.uniprot.org/uniprotkb/F1SG25" } ], "pmid": "" }, { "name": "neuron differentiation", "id": "GO:0030182", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030182", "evidence": [ { "database": "UniProtKB", "id": "F1SG25", "url": "https://www.uniprot.org/uniprotkb/F1SG25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 468, "end_pos": 470, "annotation": "n_glycosylation_sequon" }, { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG25-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 679, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG25-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG25" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG25" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 186, "end_pos": 287, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SG25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG25" }, { "id": "PS51390", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51390" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WAP", "eco_id": "ECO_0000259", "start_pos": 127, "end_pos": 176, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 209, "end_pos": 211 }, { "start_pos": 300, "end_pos": 302 }, { "start_pos": 468, "end_pos": 470 }, { "start_pos": 551, "end_pos": 553 }, { "start_pos": 71, "end_pos": 73 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG26-1", "uniprot_ac": "F1SG26", "uniprot_id": "F1SG26_PIG", "mass": { "chemical_mass": 28335.0, "monoisotopic_mass": 28335.0 }, "refseq": { "ac": "XP_005673446", "name": "patatin-like phospholipase domain-containing protein 4 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673446" }, "gene_names": [ { "name": "PNPLA4", "type": "recommended", "evidence": [ { "id": "F1SG26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ] }, { "name": "PNPLA4", "type": "synonym", "evidence": [ { "id": "XP_005673446", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673446" } ] } ], "protein_names": [ { "name": "Patatin like phospholipase domain containing 4", "type": "synonym", "evidence": [ { "id": "F1SG26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG26/entry#names_and_taxonomy" } ] }, { "name": "patatin-like phospholipase domain-containing protein 4 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_005673446", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673446" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PNPLA4", "url": "https://www.uniprot.org/uniprotkb/F1SG26", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000012100", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012100", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07222", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07222", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100294680", "url": "https://www.ncbi.nlm.nih.gov/gene/100294680", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002641", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002641", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033562", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033562", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KGEKWID", "url": "https://omabrowser.org/oma/group/KGEKWID/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SG26", "url": "https://www.orthodb.org/?gene=F1SG26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3LD73", "url": "https://www.orthodb.org/?gene=I3LD73", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12406", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12406", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12406:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12406:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01734", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01734", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-163560", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163560", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005673446", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673446", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG26-1", "url": "https://www.uniprot.org/uniprotkb/F1SG26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LD73", "url": "https://www.uniprot.org/uniprotkb/I3LD73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LD73-1", "url": "https://www.uniprot.org/uniprotkb/I3LD73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKHINLSFAACGFLGIYHLGAASALCKHGKKLLKDVQAFAGASAGSLVASVLLTAPEKIEECNAFTYNFAEEIRRQWFGAVTPGYDFMGRLRSGMESILPPNAHELAHHRLHVSITSTRTRENYLVSSFPSREDLIQVLLASSFVPIYAGLRPVAYRGQKWIDGGFTDSLPILPGGRTVTISPFSGRLDISPQDKGQLGLYVGIANQHILLSMANLVRLHQALFPPNKRIMESLYQRGFDDAVKFLLKESWFEQNA", "length": 256, "header": "tr|F1SG26-1|F1SG26_PIG Isoform 1 of Patatin like phospholipase domain containing 4 OS=Sus scrofa OX=9823 GN=PNPLA4 PE=4 SV=4 CANONICAL=F1SG26-1" }, "isoforms": [ { "isoform_ac": "F1SG26-1", "url": "https://www.uniprot.org/uniprotkb/F1SG26/entry#F1SG26-1", "sequence": { "sequence": "MKHINLSFAACGFLGIYHLGAASALCKHGKKLLKDVQAFAGASAGSLVASVLLTAPEKIEECNAFTYNFAEEIRRQWFGAVTPGYDFMGRLRSGMESILPPNAHELAHHRLHVSITSTRTRENYLVSSFPSREDLIQVLLASSFVPIYAGLRPVAYRGQKWIDGGFTDSLPILPGGRTVTISPFSGRLDISPQDKGQLGLYVGIANQHILLSMANLVRLHQALFPPNKRIMESLYQRGFDDAVKFLLKESWFEQNA", "length": 256, "header": "tr|F1SG26-1|F1SG26_PIG Isoform 1 of Patatin like phospholipase domain containing 4 OS=Sus scrofa OX=9823 GN=PNPLA4 PE=4 SV=4 CANONICAL=F1SG26-1" }, "locus": { "chromosome": "Y", "start_pos": 3367671, "end_pos": 3334296, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062219.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062219.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056829.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056829.2" } ] } }, { "isoform_ac": "I3LD73-1", "url": "https://www.uniprot.org/uniprotkb/F1SG26/entry#I3LD73-1", "sequence": { "sequence": "MKHINLSFAACGFLGIYHLGAASALCKHGKKLLKDVQAFAGASAGSLVASVLLTAPEKIEECNAFTYNFAEEIRRQWFGAVTPGYDFMGRLRSGMESILPPNAHELAHHRLHVSITSTRTRENYLVSSFPSREDLIQKWIDGGFTDSLPILPGGRTVTISPFSGRLDISPQDKGQLGLYVGIANQHILLSMANLVRLHQALFPPNKRIMESLYQRGFDDAVKFLLKESWFEQNA", "length": 234, "header": "tr|I3LD73-1|F1SG26_PIG Computationally mapped isoform of Patatin like phospholipase domain containing 4 OS=Sus scrofa OX=9823 GN=PNPLA4 PE=4 SV=3 CANONICAL=F1SG26-1" }, "locus": { "chromosome": "Y", "start_pos": 3367671, "end_pos": 3334296, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058071.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058071.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049052.3", "url": "https://www.ensembl.org/id/ENSSSCP00000049052.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 82, "start_aa": "Thr", "end_pos": 82, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr82", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LD73", "url": "https://www.uniprot.org/uniprotkb/I3LD73" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-163560", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163560", "resource": "Reactome", "description": "Triglyceride catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D6UPU4-1", "protein_name": "Patatin like phospholipase domain containing 4", "gene_name": "PNPLA4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWTARSLCTAQILLLELKEGRLCSCFLSKKQQFWTGILNYCTLRAPYDRAKYQVSKINEKKSVIGTAVAINAGGIKRTSGHSPSGEYDGRQDTLEAKMKRVNLSFASCGFLGIYHLGAAAALYRHGKKLLKVVKDFAGASAGSLAATVLLAVPENIEKCQQFTYEFAEEVRKLDFGAVTPGYDFMKRLREGIESILPSNAHEIAENRLYVSVTNVRNGKNYLFSNFASREDLIKVLLASSFVPVYAGMKPVEYKGEKWVDGGITNGLPILPFGRTITISPFSGRLDICPQDKGRVDLYVKFAKQDIMLSLANLVRFNQAMFPPNQEKMESLYQNGFDDAVHFLLKENWFE", "length": 350 }, "evidence": [ { "id": "F1SG26", "url": "https://omabrowser.org/oma/group/F1SG26/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A227-1", "protein_name": "Patatin like phospholipase domain containing 4", "gene_name": "Pnpla4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLLAATTMKQVHLSFSSCGFLGIYHLGAATVLSKRGRGLLCNVTGFAGASAGALVATLLLTAPERIEACTRFTFAFAEEVRMQALGPLTPGYDFMARLRGGIDEILPQHAHELARERLHVSVTSAVGQNYLVSNFTCRDNLITVLLASCFIPFYAGLKPMDCAGQLCVDGGLTNSLPVLPTGRTVTFSPFSGRADVSPRDLGWPGIYVRVAKQDVMVSMANLVRVQQALFPPSRGMMEAIYGMGMTDTALAGPLQGSVLLPSCLSVQHGISNDSQRNTFNSHMDTICLLPHTVHVEIAGHVG", "length": 302 }, "evidence": [ { "id": "F1SG26", "url": "https://omabrowser.org/oma/group/F1SG26/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P41247-1", "protein_name": "Patatin-like phospholipase domain-containing protein 4", "gene_name": "PNPLA4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKHINLSFAACGFLGIYHLGAASALCRHGKKLVKDVKAFAGASAGSLVASVLLTAPEKIEECNQFTYKFAEEIRRQSFGAVTPGYDFMARLRSGMESILPPSAHELAQNRLHVSITNAKTRENHLVSTFSSREDLIKVLLASSFVPIYAGLKLVEYKGQKWVDGGLTNALPILPVGRTVTISPFSGRLDISPQDKGQLDLYVNIAKQDIMLSLANLVRLNQALFPPSKRKMESLYQCGFDDTVKFLLKENWFE", "length": 253 }, "evidence": [ { "id": "F1SG26", "url": "https://omabrowser.org/oma/group/F1SG26/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ], "pmid": "" }, { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "lipid homeostasis", "id": "GO:0055088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055088", "evidence": [ { "database": "UniProtKB", "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ], "pmid": "" }, { "name": "triglyceride catabolic process", "id": "GO:0019433", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019433", "evidence": [ { "database": "UniProtKB", "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ], "pmid": "" }, { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "triacylglycerol lipase activity", "id": "GO:0004806", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004806", "evidence": [ { "database": "UniProtKB", "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ], "pmid": "" }, { "name": "retinyl-palmitate esterase activity", "id": "GO:0050253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050253", "evidence": [ { "database": "UniProtKB", "id": "F1SG26", "url": "https://www.uniprot.org/uniprotkb/F1SG26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG26" }, { "id": "PS51635", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51635" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PNPLA", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 176, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 82 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG30-1", "uniprot_ac": "F1SG30", "uniprot_id": "F1SG30_PIG", "mass": { "chemical_mass": 19835.0, "monoisotopic_mass": 19835.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SG30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG30/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG30", "url": "https://www.uniprot.org/uniprotkb/F1SG30" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SG30", "locus": {} } ], "crossref": [ { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FECINNC", "url": "https://omabrowser.org/oma/group/FECINNC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SG30", "url": "https://www.uniprot.org/uniprotkb/F1SG30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG30-1", "url": "https://www.uniprot.org/uniprotkb/F1SG30-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKILLLSLVLGLACAQEPQTEQDPTQGSRISGKWKTLYVAASNREKTSENGPFHAYMHWIHFENGNNKIFFKFFVKVKGKCTEISAKRRKVAPNVYEDAGKNELHFVHVSKNALILYNINVDKDKKTISTELNSRGDKAEEQDFKKFKEVMRQKGIPEENVMNVPETDDCPMQ", "length": 173, "header": "tr|F1SG30-1|F1SG30_PIG Isoform 1 of Lipocalin/cytosolic fatty-acid binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=F1SG30-1" }, "isoforms": [ { "isoform_ac": "F1SG30-1", "url": "https://www.uniprot.org/uniprotkb/F1SG30/entry#F1SG30-1", "sequence": { "sequence": "MKILLLSLVLGLACAQEPQTEQDPTQGSRISGKWKTLYVAASNREKTSENGPFHAYMHWIHFENGNNKIFFKFFVKVKGKCTEISAKRRKVAPNVYEDAGKNELHFVHVSKNALILYNINVDKDKKTISTELNSRGDKAEEQDFKKFKEVMRQKGIPEENVMNVPETDDCPMQ", "length": 173, "header": "tr|F1SG30-1|F1SG30_PIG Isoform 1 of Lipocalin/cytosolic fatty-acid binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=F1SG30-1" }, "locus": { "chromosome": "X", "start_pos": 1928038, "end_pos": 1922584, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013228.2", "url": "https://www.ensembl.org/id/ENSSSCT00000013228.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012875.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012875.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SG30", "url": "https://www.uniprot.org/uniprotkb/F1SG30" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TC69-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "LOC101904044", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASIQKICWFKSVFPRCKKTHLNLIMTYSNLFTGRWLTHFIAAENIDKITEGAPFHIFMRYIEFDEENGTIHFHFYIKKNGECIEKYVSGLKEENFYAVDYSGHNEFQVISGDKNTLITHNLNVDEDGRETEMVGLFGLSDVVDPNRIEEFKNVVREKGIPEENIRNFIYNDNCPRE", "length": 177 }, "evidence": [ { "id": "F1SG30", "url": "https://omabrowser.org/oma/group/F1SG30/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P08937-1", "protein_name": "Odorant-binding protein", "gene_name": "Obp1f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVKFLLIVLALGVSCAHHENLDISPSEVNGDWRTLYIVADNVEKVAEGGSLRAYFQHMECGDECQELKIIFNVKLDSECQTHTVVGQKHEDGRYTTDYSGRNYFHVLKKTDDIIFFHNVNVDESGRRQCDLVAGKREDLNKAQKQELRKLAEEYNIPNENTQHLVPTDTCNQ", "length": 172 }, "evidence": [ { "id": "F1SG30", "url": "https://omabrowser.org/oma/group/F1SG30/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SG30", "url": "https://www.uniprot.org/uniprotkb/F1SG30" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small molecule binding", "id": "GO:0036094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036094", "evidence": [ { "database": "UniProtKB", "id": "F1SG30", "url": "https://www.uniprot.org/uniprotkb/F1SG30" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SG30", "url": "https://www.uniprot.org/uniprotkb/F1SG30" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG30" }, { "id": "PF00061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipocalin/cytosolic fatty-acid binding", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 168, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG31-1", "uniprot_ac": "F1SG31", "uniprot_id": "F1SG31_PIG", "mass": { "chemical_mass": 19411.0, "monoisotopic_mass": 19411.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SG31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG31/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG31", "url": "https://www.uniprot.org/uniprotkb/F1SG31" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SG31", "locus": {} } ], "crossref": [ { "id": "IPR000566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012674", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012674", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TAENAYI", "url": "https://omabrowser.org/oma/group/TAENAYI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11430:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11430:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00061", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SG31", "url": "https://www.uniprot.org/uniprotkb/F1SG31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG31-1", "url": "https://www.uniprot.org/uniprotkb/F1SG31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKILLLSLILGLVWATEPQPDQDASQISGDWNTLYVASTNPEKTSENGTLKPYLRSITFENGKSKIIFTFFIKVNGKCRASSAEGRKIAPNVYEIDYSGKNEFHIDHVSKNSMIVYDINVDEEGKKSIITALNGKGKKAEEQDLKKFKELTRKKGIPEENIVNVIETDNCPTQ", "length": 173, "header": "tr|F1SG31-1|F1SG31_PIG Isoform 1 of Lipocalin/cytosolic fatty-acid binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=F1SG31-1" }, "isoforms": [ { "isoform_ac": "F1SG31-1", "url": "https://www.uniprot.org/uniprotkb/F1SG31/entry#F1SG31-1", "sequence": { "sequence": "MKILLLSLILGLVWATEPQPDQDASQISGDWNTLYVASTNPEKTSENGTLKPYLRSITFENGKSKIIFTFFIKVNGKCRASSAEGRKIAPNVYEIDYSGKNEFHIDHVSKNSMIVYDINVDEEGKKSIITALNGKGKKAEEQDLKKFKELTRKKGIPEENIVNVIETDNCPTQ", "length": 173, "header": "tr|F1SG31-1|F1SG31_PIG Isoform 1 of Lipocalin/cytosolic fatty-acid binding domain-containing protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=F1SG31-1" }, "locus": { "chromosome": "Y", "start_pos": 1030198, "end_pos": 1023718, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035684.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035684.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030672.1", "url": "https://www.ensembl.org/id/ENSSSCP00000030672.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SG31", "url": "https://www.uniprot.org/uniprotkb/F1SG31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F1SG31", "url": "https://omabrowser.org/oma/group/F1SG31/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIN1-1", "protein_name": "Major urinary protein 10", "gene_name": "Mup10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMMLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SG31", "url": "https://omabrowser.org/oma/group/F1SG31/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3X799-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "OBP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKVLFLTLLLGVVCAAQEEEAEQNLSELSGSWRTVYIGSTNPEKIQENGPFRTYFRELVFDDEKGTVDFYFSVKRDGKWKNVHVKATKQDDGTYVADYEGQNVFKIVSLSRTHLVAHNINVDKHGQKTELTGLFVKLNVEDEDLEKFWKLTEDKGIDKKNVVIPLLSSHIKLLFGWLIHPEQL", "length": 183 }, "evidence": [ { "id": "F1SG31", "url": "https://omabrowser.org/oma/group/F1SG31/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SG31", "url": "https://www.uniprot.org/uniprotkb/F1SG31" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "small molecule binding", "id": "GO:0036094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036094", "evidence": [ { "database": "UniProtKB", "id": "F1SG31", "url": "https://www.uniprot.org/uniprotkb/F1SG31" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SG31", "url": "https://www.uniprot.org/uniprotkb/F1SG31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG31" }, { "id": "PF00061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipocalin/cytosolic fatty-acid binding", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 168, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG48-1", "uniprot_ac": "F1SG48", "uniprot_id": "F1SG48_PIG", "mass": { "chemical_mass": 125681.0, "monoisotopic_mass": 125681.0 }, "refseq": { "ac": "XP_020926671", "name": "PR domain zinc finger protein 15 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926671" }, "gene_names": [ { "name": "PRDM15", "type": "recommended", "evidence": [ { "id": "F1SG48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ] }, { "name": "PRDM15", "type": "synonym", "evidence": [ { "id": "XP_020926671", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926671" } ] } ], "protein_names": [ { "name": "PR domain zinc finger protein 15", "type": "recommended", "evidence": [ { "id": "F1SG48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG48/entry#names_and_taxonomy" } ] }, { "name": "PR domain zinc finger protein 15 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020926671", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926671" } ] }, { "name": "PR domain-containing protein 15", "type": "synonym", "evidence": [ { "id": "F1SG48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG48/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRDM15", "url": "https://www.uniprot.org/uniprotkb/F1SG48", "locus": { "chromosome": "13", "start_pos": 205173517, "end_pos": 205241490, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012084", "url": "https://www.ensembl.org/id/ENSSSCG00000012084" } ] } } ], "crossref": [ { "id": "F1SG48", "url": "https://alphafold.ebi.ac.uk/entry/F1SG48", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012084", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012084", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19199", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19199", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518450", "url": "https://www.ncbi.nlm.nih.gov/gene/100518450", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515:SF34", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515:SF34", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21549", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21549", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23573", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23573", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020926671", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926671", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG48-1", "url": "https://www.uniprot.org/uniprotkb/F1SG48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRAGPRGHGQRLLCAQQARSSLPSNLEIRRLEDGAEGVFAVTQLVKRTQFGPFESRRVAKWEKESAFPLKVFQKDGHPVCFDTSNEDDCNWMMLVRPAAEPGHQNLTAFQHGSDVYFTTSRDIPPGTELRVWYAAFYAKRMDKPMLRQACPGLHAAGTPENSTPVESEPSQWVCKVCSATFPELQLLNEHLLGHLEQTKNVPPASQQESAPEKEAEAPRGEPPAVPKSVSAAKEQKKKPRRGRKPKASKPEQPLVIVEGEEPAEHVAEIMTEVEPVTSTTTDERIMELVLGKLATTPTDASSVPKFPHHQGSTITLKRSLILSGRPGIRRKLVRQLGEHRRVYQCSLCSKIFQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESLKQHVSYKHSRNEVDGEYRYRCGTCEKTFRIESALEFHNCRTDDKTFQCEMCFRFFSTNSNLSKHKKKHGDKKFACEVCNKMFYRKDVMLDHQRRHLEGVRRVKREDAEAGGNLLRYRKEPSGCPVCGKVFSCRSNMNKHLLTHGDKKYTCEICGRKFFRVDVLRDHIHVHFKDIALMDDHQRAEFIGKIGISSEENDDNSDESADSEPHKYSCKRCQLTFGRGKEYLKHIMETHKEKGYGCSICNRRFALKATYHAHMVIHRENLPDPNVQKYIHPCEICGRIFNSIGNLERHKLIHTGVKSHACEQCGKSFARKDMLKEHMRVHDNIREYLCAECGKGMKTKHALRHHMKLHKGIKEYECRECHRKFAQKVNMLKHYKRHTGIKDFMCELCGKTFSERNTMETHKLIHTVGKQWTCSVCDKKYVTEYMLQKHVQLTHDKVEAQSCQLCGTKVSTRASMSRHMRRKHPEVLAVRIDDLDHLPETTTIDASSIGIVQPELSLEQEDLAEGKHAKGARRTHKRKQKPEEEAGAAGAEDASFSEFSEKEAPFPGGVGDETDSAVQSIQQVVVTLGDPNVTAPSSSVGLTNITVTPITTTAGTQFTNLQPVAVGHLTTPERQLQLDNSILTVTFDTVSGSAMLHNRQNDLQIHPQPEASNPQSVAHFINLTTLVNSITPLGSQLGEQHPLTWRAVPQTDVLPPPQPQAPPPQAPQPQGPAEQQPQMYSY", "length": 1111, "header": "tr|F1SG48-1|F1SG48_PIG Isoform 1 of PR domain zinc finger protein 15 OS=Sus scrofa OX=9823 GN=PRDM15 PE=4 SV=4 CANONICAL=F1SG48-1" }, "isoforms": [ { "isoform_ac": "F1SG48-1", "url": "https://www.uniprot.org/uniprotkb/F1SG48/entry#F1SG48-1", "sequence": { "sequence": "MPRAGPRGHGQRLLCAQQARSSLPSNLEIRRLEDGAEGVFAVTQLVKRTQFGPFESRRVAKWEKESAFPLKVFQKDGHPVCFDTSNEDDCNWMMLVRPAAEPGHQNLTAFQHGSDVYFTTSRDIPPGTELRVWYAAFYAKRMDKPMLRQACPGLHAAGTPENSTPVESEPSQWVCKVCSATFPELQLLNEHLLGHLEQTKNVPPASQQESAPEKEAEAPRGEPPAVPKSVSAAKEQKKKPRRGRKPKASKPEQPLVIVEGEEPAEHVAEIMTEVEPVTSTTTDERIMELVLGKLATTPTDASSVPKFPHHQGSTITLKRSLILSGRPGIRRKLVRQLGEHRRVYQCSLCSKIFQNSSNLSRHVRSHGDKLFKCEECAKLFSRKESLKQHVSYKHSRNEVDGEYRYRCGTCEKTFRIESALEFHNCRTDDKTFQCEMCFRFFSTNSNLSKHKKKHGDKKFACEVCNKMFYRKDVMLDHQRRHLEGVRRVKREDAEAGGNLLRYRKEPSGCPVCGKVFSCRSNMNKHLLTHGDKKYTCEICGRKFFRVDVLRDHIHVHFKDIALMDDHQRAEFIGKIGISSEENDDNSDESADSEPHKYSCKRCQLTFGRGKEYLKHIMETHKEKGYGCSICNRRFALKATYHAHMVIHRENLPDPNVQKYIHPCEICGRIFNSIGNLERHKLIHTGVKSHACEQCGKSFARKDMLKEHMRVHDNIREYLCAECGKGMKTKHALRHHMKLHKGIKEYECRECHRKFAQKVNMLKHYKRHTGIKDFMCELCGKTFSERNTMETHKLIHTVGKQWTCSVCDKKYVTEYMLQKHVQLTHDKVEAQSCQLCGTKVSTRASMSRHMRRKHPEVLAVRIDDLDHLPETTTIDASSIGIVQPELSLEQEDLAEGKHAKGARRTHKRKQKPEEEAGAAGAEDASFSEFSEKEAPFPGGVGDETDSAVQSIQQVVVTLGDPNVTAPSSSVGLTNITVTPITTTAGTQFTNLQPVAVGHLTTPERQLQLDNSILTVTFDTVSGSAMLHNRQNDLQIHPQPEASNPQSVAHFINLTTLVNSITPLGSQLGEQHPLTWRAVPQTDVLPPPQPQAPPPQAPQPQGPAEQQPQMYSY", "length": 1111, "header": "tr|F1SG48-1|F1SG48_PIG Isoform 1 of PR domain zinc finger protein 15 OS=Sus scrofa OX=9823 GN=PRDM15 PE=4 SV=4 CANONICAL=F1SG48-1" }, "locus": { "chromosome": "13", "start_pos": 205217025, "end_pos": 205176755, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013218.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013218.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012866.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012866.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "positive regulation of canonical Wnt signaling pathway", "id": "GO:0090263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090263", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "negative regulation of MAPK cascade", "id": "GO:0043409", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043409", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "regulation of stem cell division", "id": "GO:2000035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000035", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "methyltransferase activity", "id": "GO:0008168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008168", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" }, { "name": "promoter-specific chromatin binding", "id": "GO:1990841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990841", "evidence": [ { "database": "UniProtKB", "id": "F1SG48", "url": "https://www.uniprot.org/uniprotkb/F1SG48" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1051, "end_pos": 1053, "annotation": "n_glycosylation_sequon" }, { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 162, "end_pos": 164, "annotation": "n_glycosylation_sequon" }, { "start_pos": 355, "end_pos": 357, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 446, "end_pos": 448, "annotation": "n_glycosylation_sequon" }, { "start_pos": 961, "end_pos": 963, "annotation": "n_glycosylation_sequon" }, { "start_pos": 973, "end_pos": 975, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SG48-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1111, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SG48-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SG48" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SG48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG48" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 344, "end_pos": 366, "start_aa": "Tyr", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SG48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG48" }, { "id": "PS50280", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50280" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SET", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 135, "start_aa": "Ser", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1051, "end_pos": 1053 }, { "start_pos": 106, "end_pos": 108 }, { "start_pos": 162, "end_pos": 164 }, { "start_pos": 355, "end_pos": 357 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 446, "end_pos": 448 }, { "start_pos": 961, "end_pos": 963 }, { "start_pos": 973, "end_pos": 975 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SG80-1", "uniprot_ac": "F1SG80", "uniprot_id": "F1SG80_PIG", "mass": { "chemical_mass": 15567.0, "monoisotopic_mass": 15567.0 }, "refseq": { "ac": "NP_001230459", "name": "mediator of RNA polymerase II transcription subunit 21", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230459" }, "gene_names": [ { "name": "MED21", "type": "recommended", "evidence": [ { "id": "F1SG80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG80" } ] }, { "name": "MED21", "type": "synonym", "evidence": [ { "id": "NP_001230459", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230459" } ] } ], "protein_names": [ { "name": "Mediator of RNA polymerase II transcription subunit 21", "type": "recommended", "evidence": [ { "id": "F1SG80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SG80/entry#names_and_taxonomy" } ] }, { "name": "mediator of RNA polymerase II transcription subunit 21", "type": "synonym", "evidence": [ { "id": "NP_001230459", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230459" } ] } ], "function": [ { "annotation": "Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.", "evidence": [ { "database": "UniProtKB", "id": "F1SG80", "url": "https://www.uniprot.org/uniprotkb/F1SG80#function" }, { "database": "UniProtKB", "id": "ARBA00025687", "url": "https://www.uniprot.org/uniprotkb/ARBA00025687#function" }, { "database": "UniProtKB", "id": "RU366036", "url": "https://www.uniprot.org/uniprotkb/RU366036#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SG80", "url": "https://www.uniprot.org/uniprotkb/F1SG80" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MED21", "url": "https://www.uniprot.org/uniprotkb/F1SG80", "locus": { "chromosome": "5", "start_pos": 46725568, "end_pos": 46736388, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000041972", "url": "https://www.ensembl.org/id/ENSSSCG00000041972" } ] } } ], "crossref": [ { "id": "ENSSSCG00000041972", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000041972", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155076", "url": "https://www.ncbi.nlm.nih.gov/gene/100155076", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037212", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037212", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155076", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155076", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DSFPIEA", "url": "https://omabrowser.org/oma/group/DSFPIEA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SG80", "url": "https://www.orthodb.org/?gene=F1SG80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13381:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13381:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230459", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230459", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SG80", "url": "https://www.uniprot.org/uniprotkb/F1SG80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SG80-1", "url": "https://www.uniprot.org/uniprotkb/F1SG80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTTINKDQPANPTEEYAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRSGTHSQSLPDS", "length": 144, "header": "tr|F1SG80-1|F1SG80_PIG Isoform 1 of Mediator of RNA polymerase II transcription subunit 21 OS=Sus scrofa OX=9823 GN=MED21 PE=3 SV=1 CANONICAL=F1SG80-1" }, "isoforms": [ { "isoform_ac": "F1SG80-1", "url": "https://www.uniprot.org/uniprotkb/F1SG80/entry#F1SG80-1", "sequence": { "sequence": "MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTTINKDQPANPTEEYAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRSGTHSQSLPDS", "length": 144, "header": "tr|F1SG80-1|F1SG80_PIG Isoform 1 of Mediator of RNA polymerase II transcription subunit 21 OS=Sus scrofa OX=9823 GN=MED21 PE=3 SV=1 CANONICAL=F1SG80-1" }, "locus": { "chromosome": "5", "start_pos": 46736365, "end_pos": 46730710, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080104.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080104.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073425.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073425.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SG80", "url": "https://www.uniprot.org/uniprotkb/F1SG80" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155076", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155076", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4AA11-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "Med21", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRSVTHSQSLPDS", "length": 144 }, "evidence": [ { "id": "F1SG80", "url": "https://omabrowser.org/oma/group/F1SG80/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3I0W6-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "Med21", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRSVTRSQSLPDS", "length": 144 }, "evidence": [ { "id": "F1SG80", "url": "https://omabrowser.org/oma/group/F1SG80/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q13503-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "MED21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFNNIQTAINKDQPANPTEEYAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRSGTHSQSLPDS", "length": 144 }, "evidence": [ { "id": "F1SG80", "url": "https://omabrowser.org/oma/group/F1SG80/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2TBU8-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "MED21", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATSLEDVVYRGDMLLEKIQSALADIAQSQLKTRSGTHSQSLPDS", "length": 144 }, "evidence": [ { "id": "F1SG80", "url": "https://omabrowser.org/oma/group/F1SG80/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7ZTI5-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "med21", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNIQTAINKDQPSNPTEEYAQLFAALIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDALLEKIQTALADIAQSQLRTRSGAPSQQTPPES", "length": 145 }, "evidence": [ { "id": "F1SG80", "url": "https://omabrowser.org/oma/group/F1SG80/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9CQ39-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "Med21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNIQTAINKDQPANPTEEYAQLFAALIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADIAQSQLKTRSVTHSHSLPDS", "length": 144 }, "evidence": [ { "id": "F1SG80", "url": "https://omabrowser.org/oma/group/F1SG80/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W5P1-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 21", "gene_name": "MED21", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPIPCPPQEDYAQLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQGTARDLEEVVQKGELLLEKMQYSLECIAQAQLDMQITLKHDLQ", "length": 142 }, "evidence": [ { "id": "F1SG80", "url": "https://omabrowser.org/oma/group/F1SG80/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SG80", "url": "https://www.uniprot.org/uniprotkb/F1SG80" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F1SG80", "url": "https://www.uniprot.org/uniprotkb/F1SG80" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SG80", "url": "https://www.uniprot.org/uniprotkb/F1SG80" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SG80", "url": "https://www.uniprot.org/uniprotkb/F1SG80" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mediator complex", "id": "GO:0016592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016592", "evidence": [ { "database": "UniProtKB", "id": "F1SG80", "url": "https://www.uniprot.org/uniprotkb/F1SG80" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGC7-1", "uniprot_ac": "F1SGC7", "uniprot_id": "F1SGC7_PIG", "mass": { "chemical_mass": 29836.0, "monoisotopic_mass": 29836.0 }, "refseq": {}, "gene_names": [ { "name": "MRPL47", "type": "recommended", "evidence": [ { "id": "F1SGC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein uL29m", "type": "recommended", "evidence": [ { "id": "F1SGC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGC7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRPL47", "url": "https://www.uniprot.org/uniprotkb/F1SGC7", "locus": { "chromosome": "13", "start_pos": 117625330, "end_pos": 117656389, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011763", "url": "https://www.ensembl.org/id/ENSSSCG00000011763" } ] } } ], "crossref": [ { "id": "F1SGC7", "url": "https://alphafold.ebi.ac.uk/entry/F1SGC7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011763", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011763", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "4CE4", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=4CE4&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "4V19", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=4V19&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GAW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GB2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR010729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21183", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21183", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21183:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21183:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00004ce4", "url": "https://www.rcsb.org/structure/pdb_00004ce4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00004v19", "url": "https://www.rcsb.org/structure/pdb_00004v19", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gaw", "url": "https://www.rcsb.org/structure/pdb_00006gaw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gb2", "url": "https://www.rcsb.org/structure/pdb_00006gb2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydp", "url": "https://www.rcsb.org/structure/pdb_00006ydp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydw", "url": "https://www.rcsb.org/structure/pdb_00006ydw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nqh", "url": "https://www.rcsb.org/structure/pdb_00007nqh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nql", "url": "https://www.rcsb.org/structure/pdb_00007nql", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsh", "url": "https://www.rcsb.org/structure/pdb_00007nsh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsi", "url": "https://www.rcsb.org/structure/pdb_00007nsi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsj", "url": "https://www.rcsb.org/structure/pdb_00007nsj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oin", "url": "https://www.rcsb.org/structure/pdb_00008oin", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oiq", "url": "https://www.rcsb.org/structure/pdb_00008oiq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4CE4", "url": "https://www.rcsb.org/structure/4CE4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4V19", "url": "https://www.rcsb.org/structure/4V19", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.rcsb.org/structure/6GAW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.rcsb.org/structure/6GB2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.rcsb.org/structure/6YDP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.rcsb.org/structure/6YDW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.rcsb.org/structure/7NQH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.rcsb.org/structure/7NQL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.rcsb.org/structure/7NSH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.rcsb.org/structure/7NSI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.rcsb.org/structure/7NSJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.rcsb.org/structure/8OIN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIQ", "url": "https://www.rcsb.org/structure/8OIQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF06984", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06984", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5389840", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5419276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9937383", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGC7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAGLAVFCRRVSAALKACRLLIRPQAPPSTRFSPSLLPKNTPNVTSFHQFRIFHTTFSRRGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDALDKVVQEREDALRLLQTGQEKARPGAWRRDIFGRIIWHKFKQWPIPWYLNKKYNRKRFFAMPYVERFVRMRIEKQARIKARKRSLERKKEKFLQEKFPHLSETQKSSHV", "length": 250, "header": "tr|F1SGC7-1|F1SGC7_PIG Isoform 1 of Large ribosomal subunit protein uL29m OS=Sus scrofa OX=9823 GN=MRPL47 PE=1 SV=4 CANONICAL=F1SGC7-1" }, "isoforms": [ { "isoform_ac": "F1SGC7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGC7/entry#F1SGC7-1", "sequence": { "sequence": "MAAAGLAVFCRRVSAALKACRLLIRPQAPPSTRFSPSLLPKNTPNVTSFHQFRIFHTTFSRRGLEEFFDDPKNWGEEKVKSGASWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDALDKVVQEREDALRLLQTGQEKARPGAWRRDIFGRIIWHKFKQWPIPWYLNKKYNRKRFFAMPYVERFVRMRIEKQARIKARKRSLERKKEKFLQEKFPHLSETQKSSHV", "length": 250, "header": "tr|F1SGC7-1|F1SGC7_PIG Isoform 1 of Large ribosomal subunit protein uL29m OS=Sus scrofa OX=9823 GN=MRPL47 PE=1 SV=4 CANONICAL=F1SGC7-1" }, "locus": { "chromosome": "13", "start_pos": 117656335, "end_pos": 117627759, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012874.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012874.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012533.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012533.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Architecture of the large subunit of the mammalian mitochondrial ribosome.", "journal": "Nature", "date": "2014", "authors": "Greber Basil J, Boehringer Daniel, Leitner Alexander, Bieri Philipp, Voigts-Hoffmann Felix, Erzberger Jan P, Leibundgut Marc, Aebersold Ruedi, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "reference": [ { "type": "PubMed", "id": "24362565", "url": "https://glygen.org/publication/PubMed/24362565" } ] }, { "title": "The complete structure of the large subunit of the mammalian mitochondrial ribosome.", "journal": "Nature", "date": "2014", "authors": "Greber Basil J, Boehringer Daniel, Leibundgut Marc, Bieri Philipp, Leitner Alexander, Schmitz Nikolaus, Aebersold Ruedi, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "reference": [ { "type": "PubMed", "id": "25271403", "url": "https://glygen.org/publication/PubMed/25271403" } ] }, { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. Cell", "date": "2021", "authors": "Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "reference": [ { "type": "PubMed", "id": "33878294", "url": "https://glygen.org/publication/PubMed/33878294" } ] }, { "title": "Molecular basis of translation termination at noncanonical stop codons in human mitochondria.", "journal": "Science", "date": "2023", "authors": "Saurer Martin, Leibundgut Marc, Nadimpalli Hima Priyanka, Scaiola Alain, Sch\u00f6nhut Tanja, Lee Richard G, Siira Stefan J, Rackham Oliver, Dreos Ren\u00e9, Lenar\u010di\u010d Tea, Kummer Eva, Gatfield David, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "reference": [ { "type": "PubMed", "id": "37141370", "url": "https://glygen.org/publication/PubMed/37141370" } ] } ], "pathway": [ { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial large ribosomal subunit", "id": "GO:0005762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005762", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial translation", "id": "GO:0032543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032543", "evidence": [ { "database": "UniProtKB", "id": "F1SGC7", "url": "https://www.uniprot.org/uniprotkb/F1SGC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGC7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 250, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGC7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGC7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 45, "end_pos": 47 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGD3-1", "uniprot_ac": "F1SGD3", "uniprot_id": "F1SGD3_PIG", "mass": { "chemical_mass": 59145.0, "monoisotopic_mass": 59145.0 }, "refseq": { "ac": "XP_001927051", "name": "synaptotagmin-10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927051" }, "gene_names": [ { "name": "SYT10", "type": "recommended", "evidence": [ { "id": "F1SGD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ] }, { "name": "SYT10", "type": "synonym", "evidence": [ { "id": "XP_001927051", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927051" } ] } ], "protein_names": [ { "name": "Synaptotagmin 10", "type": "synonym", "evidence": [ { "id": "F1SGD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGD3/entry#names_and_taxonomy" } ] }, { "name": "synaptotagmin-10", "type": "synonym", "evidence": [ { "id": "XP_001927051", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927051" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYT10", "url": "https://www.uniprot.org/uniprotkb/F1SGD3", "locus": { "chromosome": "5", "start_pos": 40934326, "end_pos": 40872283, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000527", "url": "https://www.ensembl.org/id/ENSSSCG00000000527" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000527", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000527", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08385", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08385", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08403", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08403", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100158038", "url": "https://www.ncbi.nlm.nih.gov/gene/100158038", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158038", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158038", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IWKDIHC", "url": "https://omabrowser.org/oma/group/IWKDIHC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGD3", "url": "https://www.orthodb.org/?gene=F1SGD3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10024", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10024", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10024:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10024:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927051", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927051", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGD3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFHKEDGVSSLCQKALHIVTELCFAGQVEWEKCSSIFPPDRGSQGESSTDISVSLLAVVVSFCGLALLVVSLFVFWKLCWPCWKSKPVTSNVTTLPQSISSAPTEVFETEEKKEVKENGKPALKAIEPAIKISHTSPDIPAEVQTALKEHLIKHARVQRQTTEPTSSSRHNSFRRHLPRQMQVSSVDFGMGTEPVLQRRETTTSIGRIKPELYKQKSVDSEGNRKEDVKTCGKLNFTLQYDYENELLVVKIIKALDLPAKDFTGTSDPYVKMYLLPDRKKKYQTRVHRKTLNPLFDETFQFPVAYDQLSNRKLHFSVYDFDRFSRHDMIGEVILDNLFEASDLSREATVWKDIHCATTESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRRLKKRKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLSIAVMDYDRVGHNEVIGVCRTGLDAEGLGRDHWNEMLAYHRKPITHWHPLLELPGRATSFDSQGSCPSPKPPSTP", "length": 523, "header": "tr|F1SGD3-1|F1SGD3_PIG Isoform 1 of Synaptotagmin 10 OS=Sus scrofa OX=9823 GN=SYT10 PE=3 SV=1 CANONICAL=F1SGD3-1" }, "isoforms": [ { "isoform_ac": "F1SGD3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGD3/entry#F1SGD3-1", "sequence": { "sequence": "MSFHKEDGVSSLCQKALHIVTELCFAGQVEWEKCSSIFPPDRGSQGESSTDISVSLLAVVVSFCGLALLVVSLFVFWKLCWPCWKSKPVTSNVTTLPQSISSAPTEVFETEEKKEVKENGKPALKAIEPAIKISHTSPDIPAEVQTALKEHLIKHARVQRQTTEPTSSSRHNSFRRHLPRQMQVSSVDFGMGTEPVLQRRETTTSIGRIKPELYKQKSVDSEGNRKEDVKTCGKLNFTLQYDYENELLVVKIIKALDLPAKDFTGTSDPYVKMYLLPDRKKKYQTRVHRKTLNPLFDETFQFPVAYDQLSNRKLHFSVYDFDRFSRHDMIGEVILDNLFEASDLSREATVWKDIHCATTESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRRLKKRKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLSIAVMDYDRVGHNEVIGVCRTGLDAEGLGRDHWNEMLAYHRKPITHWHPLLELPGRATSFDSQGSCPSPKPPSTP", "length": 523, "header": "tr|F1SGD3-1|F1SGD3_PIG Isoform 1 of Synaptotagmin 10 OS=Sus scrofa OX=9823 GN=SYT10 PE=3 SV=1 CANONICAL=F1SGD3-1" }, "locus": { "chromosome": "5", "start_pos": 40934293, "end_pos": 40872601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000569.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000569.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000557.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000557.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158038", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158038", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C2V4-1", "protein_name": "Synaptotagmin 10", "gene_name": "SYT10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSFPAEDGVGSLCHKALQIISELCLGGQVEREKCAGIFPLETARQGIGGTDISVSLLAVVVSFCGLALLVVSLFVFWKLCWPCWRSKPLTSNASNVPQSTSSAPTEVLETSEKKEVKENGKPTTKVLEAALKISHTSPDIPAEVQNALKEHLIRHARMQRQITEPTSSSRHNSFRRHLPRQMQVSSVDFNMGTDPILQRGETTTSIGRIKPELYKQKSVDSDGQQEDVKTCGKLNFTLRYDYENELLAVTIVKALDLPAKDFTGTSDPYVKIYLLPDRKKKFQTRVHRKTLNPVFDETFQFPVAYDQLSNRKLHFSVYDFDRFSRHDMIGEVILDNLFEVSDLSREANVWKDIHCATTESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGASDPYVKVSLMCEGRRLKKRKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLSIAVMDYDRVGHNEVIGVCRTGIDAEGLGRDHWNEMLAYPRKPITHWHPLVELPGRATSFDSQGSCSSPKPPLTP", "length": 522 }, "evidence": [ { "id": "F1SGD3", "url": "https://omabrowser.org/oma/group/F1SGD3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MRP4-1", "protein_name": "Synaptotagmin 10", "gene_name": "SYT10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSFHKEDGVSSLCQKALHIVTELCFAGQVEWEKCSSIFPPDGGSQGGSNTDISVSLLAVVVSFCGLALLVVSLFVFWKLCWPFWKSKPMTFNVSTLPQSMSSAPTEVFETEEKKEIKENGEPAPKVIEPAIKISHTSPDIPAEVQTAVKEHVIKHARVQRQTTEPTSSSRHNSFRRHLPRQMQVSSVDFGMGTEPILQRGETTTSIGRIKPELYKQKSVDSEDNRKEDVKTCGKLNFTLQYDYENELLVVKIIKALDLPAKDFIGTSDPYVKMYLLPDRKKKFQTRVHRKTLNPLFDETFQFPVAYDQLSNRKLHFSVYDFDRFSRHDMIGEVIFDNLFEASDLSREATVWKDIHCATTESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDVTGSSDPYVKVSLMCEGRRLKKKKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLSIAVMDYDRVGHNEVIGVCRTGLDAKGLGRDHWNEMLTYHRKPITHWHPLLELPGRATSFDSQGSCPSPKPTSTP", "length": 523 }, "evidence": [ { "id": "F1SGD3", "url": "https://omabrowser.org/oma/group/F1SGD3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O08625-1", "protein_name": "Synaptotagmin-10", "gene_name": "Syt10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFRKEDGVSSLCQKALHIITELCFAGQVEWDKCSGIFPADRSGQGGGGTDISVSLLAVVVSFCGLALLVVSLFVFWKLCWPCWKSKLVAPNVSTLPQSISSAPTEVFETEEKKEVEENEKPAPKAIEPAIKISHTSPDIPAEVQTALKEHLIKHARVQRQTTDPTSSSRHNSFRRHLPRQMNVSSVDFSMGTEPVLQRGETRTSIGRIKPELYKQKSVDSEGNRKDDVKTCGKLNFALQYDYENELLVVKIIKALDLPAKDFTGTSDPYVKIYLLPDRKKKFQTRVHRKTLNPLFDELFQFPVVYDQLSNRKLHFSIYDFDRFSRHDMIGEVILDNLFEVSDLSREATVWKDIHCATTESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRRLKKRKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLCIAVMDYDRVGHNEVIGVCRTGLDAEGLGRDHWNEMLAYHRKPITHWHPLLELPGRATSFDSQGSCSSPRPPSTP", "length": 523 }, "evidence": [ { "id": "F1SGD3", "url": "https://omabrowser.org/oma/group/F1SGD3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6XYQ8-1", "protein_name": "Synaptotagmin-10", "gene_name": "SYT10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSFHKEDGVNSLCQKALHIVTELCFAGQVEWEKCSGIFPRDRGSQGGSSTDISVSLLAVVVSFCGLALLVVSLFVFWKLCWPCWKSKPVTSNITTLPQSISSAPTEVFETEEKKEIKENEKPAVKAIEPAIKISHTSPDIPAEVQTALKEHLIKHARVQRQITEPTSSTRHSSFRRHLPRQMQVSSVDFSMGTEPVLQRGETTTSIGRIKPELYKQKSVDSEGNQNEDVKICGKLNFTLQYDYENELLVVKIIKALDLPAKDFTGTSDPYVKMYLLPDRKKKFQTRVHRKTLNPLFDETFQFPVAYDQLSNRKLHFSVYDFDRFSRHDMIGEVILDNLFEVSDLSREATVWKDIHCATTESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRRLKKRKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLSIAVMDYDRVGHNEVIGVCRTGLDAEGLGRDHWNEMLAYHRKPITHWHPLLELPGRATSFDSQGSCPSPKPPSTP", "length": 523 }, "evidence": [ { "id": "F1SGD3", "url": "https://omabrowser.org/oma/group/F1SGD3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9R0N4-1", "protein_name": "Synaptotagmin-10", "gene_name": "Syt10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSFRKEDGVSSLCQKALHIITELCFAGQVEWDKCSGIFPADRSGQGGGGTDISVSLLAVVVSFCGLALLVVSLFVFWKLCWPCWKSKLVAPNLSVLPQSISSAPTEVFETEEKKEVEENEKPAPKAIEPAIKISHTSPDIPAEVQTALKEHLIKHARVQRQTTEPTSSSRHNSFRRHLPRQMNVSSVDFSVGTEPILQRGETRTSIGRIKPELYKQKSVDSEGNRKDDVKTCGKLNFALQYDYENELLVVKIIKALDLPAKDFTGTSDPYVKIYLLPDRKKKFQTRVHRKTLNPLFDELFQFPVVYDQLSNRKLHFSIYDFDRFSRHDMIGEVILDNLFEVSDLSREATVWKDIHCATTESIDLGEIMFSLCYLPTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRRLKKRKTTTKKNTLNPVYNEAIIFDIPPENVDQVSLCIAVMDYDRVGHNEVIGVCRTGLDAEGLGRDHWNEMLAYHRKPITHWHPLLELPGRATSFDSQGSCSSPRPPSTP", "length": 523 }, "evidence": [ { "id": "F1SGD3", "url": "https://omabrowser.org/oma/group/F1SGD3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" }, { "name": "transport vesicle membrane", "id": "GO:0030658", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030658", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" }, { "name": "exocytic vesicle", "id": "GO:0070382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070382", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" }, { "name": "SNARE binding", "id": "GO:0000149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000149", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" }, { "name": "calcium ion sensor activity", "id": "GO:0061891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061891", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "chemical synaptic transmission", "id": "GO:0007268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007268", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" }, { "name": "regulation of calcium ion-dependent exocytosis", "id": "GO:0017158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017158", "evidence": [ { "database": "UniProtKB", "id": "F1SGD3", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGD3" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 352, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 236, "end_pos": 238 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGF1-1", "uniprot_ac": "F1SGF1", "uniprot_id": "F1SGF1_PIG", "mass": { "chemical_mass": 52206.0, "monoisotopic_mass": 52206.0 }, "refseq": { "ac": "XP_020924841", "name": "26S proteasome non-ATPase regulatory subunit 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924841" }, "gene_names": [ { "name": "PSMD6", "type": "recommended", "evidence": [ { "id": "F1SGF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGF1" } ] }, { "name": "PSMD6", "type": "synonym", "evidence": [ { "id": "XP_020924841", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924841" } ] } ], "protein_names": [ { "name": "26S proteasome non-ATPase regulatory subunit 6", "type": "recommended", "evidence": [ { "id": "F1SGF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGF1/entry#names_and_taxonomy" } ] }, { "name": "26S proteasome non-ATPase regulatory subunit 6", "type": "synonym", "evidence": [ { "id": "XP_020924841", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924841" } ] }, { "name": "26S proteasome regulatory subunit RPN7", "type": "synonym", "evidence": [ { "id": "F1SGF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGF1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair.", "evidence": [ { "database": "UniProtKB", "id": "F1SGF1", "url": "https://www.uniprot.org/uniprotkb/F1SGF1#function" }, { "database": "UniProtKB", "id": "ARBA00002362", "url": "https://www.uniprot.org/uniprotkb/ARBA00002362#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGF1", "url": "https://www.uniprot.org/uniprotkb/F1SGF1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMD6", "url": "https://www.uniprot.org/uniprotkb/F1SGF1", "locus": { "chromosome": "13", "start_pos": 45496362, "end_pos": 45527530, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011494", "url": "https://www.ensembl.org/id/ENSSSCG00000011494" } ] } } ], "crossref": [ { "id": "F1SGF1", "url": "https://alphafold.ebi.ac.uk/entry/F1SGF1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011494", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011494", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519870", "url": "https://www.ncbi.nlm.nih.gov/gene/100519870", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019585", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019585", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049549", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049549", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519870", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519870", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RLHCKVD", "url": "https://omabrowser.org/oma/group/RLHCKVD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGF1", "url": "https://www.orthodb.org/?gene=F1SGF1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14145", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14145", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14145:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14145:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01399", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01399", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21154", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21154", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169091", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1234176", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1236978", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174084", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174154", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174184", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-187577", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-349425", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-350562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-382556", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4608870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641258", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5358346", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607761", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607764", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610780", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610785", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5632684", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5658442", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5668541", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5676590", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5687128", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68867", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68949", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69017", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69601", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75815", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8852276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854050", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939902", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8941858", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948751", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9020702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9755511", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9766229", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9907900", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9931269", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9932298", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020924841", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924841", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGF1", "url": "https://www.uniprot.org/uniprotkb/F1SGF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGF1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGF1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSRGRCGRRRTRDRKPGWRRMRALTGSSHFRRSCYLRGSGLSFSLGRTCAAAAAAAAAAEMPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDAAVREELMAAVRDNNMAPYYEALCKSLDWQMDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM", "length": 450, "header": "tr|F1SGF1-1|F1SGF1_PIG Isoform 1 of 26S proteasome non-ATPase regulatory subunit 6 OS=Sus scrofa OX=9823 GN=PSMD6 PE=1 SV=3 CANONICAL=F1SGF1-1" }, "isoforms": [ { "isoform_ac": "F1SGF1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGF1/entry#F1SGF1-1", "sequence": { "sequence": "MSSRGRCGRRRTRDRKPGWRRMRALTGSSHFRRSCYLRGSGLSFSLGRTCAAAAAAAAAAEMPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDAAVREELMAAVRDNNMAPYYEALCKSLDWQMDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM", "length": 450, "header": "tr|F1SGF1-1|F1SGF1_PIG Isoform 1 of 26S proteasome non-ATPase regulatory subunit 6 OS=Sus scrofa OX=9823 GN=PSMD6 PE=1 SV=3 CANONICAL=F1SGF1-1" }, "locus": { "chromosome": "13", "start_pos": 45527331, "end_pos": 45506451, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012577.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012577.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012248.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012248.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGF1", "url": "https://www.uniprot.org/uniprotkb/F1SGF1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519870", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519870", "resource": "KEGG Pathway" }, { "id": "R-SSC-1169091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "resource": "Reactome", "description": "Activation of NF-kappaB in B cells" }, { "id": "R-SSC-1234176", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "resource": "Reactome", "description": "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha" }, { "id": "R-SSC-1236978", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "resource": "Reactome", "description": "Cross-presentation of soluble exogenous antigens (endosomes)" }, { "id": "R-SSC-174084", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "resource": "Reactome", "description": "Autodegradation of Cdh1 by Cdh1:APC/C" }, { "id": "R-SSC-174154", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of Securin" }, { "id": "R-SSC-174178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "resource": "Reactome", "description": "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1" }, { "id": "R-SSC-174184", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "resource": "Reactome", "description": "Cdc20:Phospho-APC/C mediated degradation of Cyclin A" }, { "id": "R-SSC-187577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "resource": "Reactome", "description": "SCF(Skp2)-mediated degradation of p27/p21" }, { "id": "R-SSC-202424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "resource": "Reactome", "description": "Downstream TCR signaling" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-349425", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "resource": "Reactome", "description": "Autodegradation of the E3 ubiquitin ligase COP1" }, { "id": "R-SSC-350562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "resource": "Reactome", "description": "Regulation of ornithine decarboxylase (ODC)" }, { "id": "R-SSC-382556", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "resource": "Reactome", "description": "ABC-family protein mediated transport" }, { "id": "R-SSC-450408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "resource": "Reactome", "description": "AUF1 (hnRNP D0) binds and destabilizes mRNA" }, { "id": "R-SSC-4608870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "resource": "Reactome", "description": "Asymmetric localization of PCP proteins" }, { "id": "R-SSC-4641257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "resource": "Reactome", "description": "Degradation of AXIN" }, { "id": "R-SSC-4641258", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "resource": "Reactome", "description": "Degradation of DVL" }, { "id": "R-SSC-5358346", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "resource": "Reactome", "description": "Hedgehog ligand biogenesis" }, { "id": "R-SSC-5607761", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "resource": "Reactome", "description": "Dectin-1 mediated noncanonical NF-kB signaling" }, { "id": "R-SSC-5607764", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "resource": "Reactome", "description": "CLEC7A (Dectin-1) signaling" }, { "id": "R-SSC-5610780", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "resource": "Reactome", "description": "Degradation of GLI1 by the proteasome" }, { "id": "R-SSC-5610785", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "resource": "Reactome", "description": "GLI3 is processed to GLI3R by the proteasome" }, { "id": "R-SSC-5632684", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "resource": "Reactome", "description": "Hedgehog 'on' state" }, { "id": "R-SSC-5658442", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "resource": "Reactome", "description": "Regulation of RAS by GAPs" }, { "id": "R-SSC-5668541", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "resource": "Reactome", "description": "TNFR2 non-canonical NF-kB pathway" }, { "id": "R-SSC-5676590", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "resource": "Reactome", "description": "NIK-->noncanonical NF-kB signaling" }, { "id": "R-SSC-5687128", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "resource": "Reactome", "description": "MAPK6/MAPK4 signaling" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-68867", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "resource": "Reactome", "description": "Assembly of the pre-replicative complex" }, { "id": "R-SSC-68949", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "resource": "Reactome", "description": "Orc1 removal from chromatin" }, { "id": "R-SSC-69017", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "resource": "Reactome", "description": "CDK-mediated phosphorylation and removal of Cdc6" }, { "id": "R-SSC-69481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "resource": "Reactome", "description": "G2/M Checkpoints" }, { "id": "R-SSC-69601", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "resource": "Reactome", "description": "Ubiquitin-Mediated Degradation of Phosphorylated Cdc25A" }, { "id": "R-SSC-75815", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "resource": "Reactome", "description": "Ubiquitin-dependent degradation of Cyclin D" }, { "id": "R-SSC-8852276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "resource": "Reactome", "description": "The role of GTSE1 in G2/M progression after G2 checkpoint" }, { "id": "R-SSC-8854050", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "resource": "Reactome", "description": "FBXL7 down-regulates AURKA during mitotic entry and in early mitosis" }, { "id": "R-SSC-8939236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "resource": "Reactome", "description": "RUNX1 regulates transcription of genes involved in differentiation of HSCs" }, { "id": "R-SSC-8939902", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "resource": "Reactome", "description": "Regulation of RUNX2 expression and activity" }, { "id": "R-SSC-8941858", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "resource": "Reactome", "description": "Regulation of RUNX3 expression and activity" }, { "id": "R-SSC-8948751", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "resource": "Reactome", "description": "Regulation of PTEN stability and activity" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-9020702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "resource": "Reactome", "description": "Interleukin-1 signaling" }, { "id": "R-SSC-9755511", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "resource": "Reactome", "description": "KEAP1-NFE2L2 pathway" }, { "id": "R-SSC-9766229", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "resource": "Reactome", "description": "Degradation of CDH1" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" }, { "id": "R-SSC-9907900", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "resource": "Reactome", "description": "Proteasome assembly" }, { "id": "R-SSC-9931269", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "resource": "Reactome", "description": "AMPK-induced ERAD and lysosome mediated degradation of PD-L1(CD274)" }, { "id": "R-SSC-9932298", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "resource": "Reactome", "description": "Degradation of CRY and PER proteins" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z6E1-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6", "gene_name": "PSMD6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPLENLEEEGLPKNPDLRITQLRFLLSLRPRAPDPAARDELMAAVRLHNMAPYYEALCKSLEWQIDTELLNKMKKANEEELKRLDNELEDAEKILGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNIEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALDRPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYAAFFQSLAIVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVSVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM", "length": 389 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0M4M7-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6", "gene_name": "Psmd6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDTAVREELMAAVRENNMAPYYEALCKSLDWQMDMDLLSKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM", "length": 389 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MXE4-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6", "gene_name": "PSMD6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDAAVRDELMAAVRDNNMAPYYEALCKSLEWQMDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRRTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEVVETNRARQFQEEDIYVEVNHVAVHPKQLDTGTVSTTQETLTFKRNQM", "length": 400 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HIS0-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6", "gene_name": "Psmd6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGNAAVREELMAAVRENNMAPYYEALCKSLDWQMDMDLLSKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCLIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM", "length": 389 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q06103-1", "protein_name": "26S proteasome regulatory subunit RPN7", "gene_name": "RPN7", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVDVEEKSQEVEYVDPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAVRLTGSDRV", "length": 429 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q15008-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6", "gene_name": "PSMD6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDAAVRDELMAAVRDNNMAPYYEALCKSLDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM", "length": 389 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q55C75-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6", "gene_name": "psmD6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDESIKKLPDLAIADLIFTVKLEGKTGTESYNKLIKEIETHKMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREAYLAKSDFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHDIVTRNLEKAQSLVEEGGDWDRKNRLKTYEAVYKMSIRQFKEASDLYLETVASFTSTEFIDYSRFIQYLIFTSLLHLDRVSLKQKVIDSPDVLSVINDTPKLQDLLQSFYNGDYANFFGALAHFSDSIKGDRYLAEHSRFFTREMRILAYNQFLESYSSVKLESMSNQFGVSYDFIDRELSRFVAAGRLNCKIDKVSGVIETTRSDAKNHLYKTTLQQGDNLLNRVQKLSRVINV", "length": 382 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q93Y35-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6 homolog", "gene_name": "RPN7", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGGAEGSQQPHLILANKLFLLTHPDVPDIEKVQLKSEVLDFIRSHGMAPLYETLIASSVLDLDQSLLESMRAANEEELKKLDEKIADAEENLGESEVREAHLAKALYFIRISDKEKALEQLKLTEGKTVAVGQKMDVVFYTLQLAFFYMDFDLVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYEIFPYETFIFYTVLTSIITLDRVSLKQKVVDAPEILTVLGKIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL", "length": 387 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q99JI4-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6", "gene_name": "Psmd6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDAAVREELMAAVRENNMAPYYEALCKSLDWQMDVDLLSKMKKANEEELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCQIGDKEGALTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRLKVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKVIKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAIVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRVINM", "length": 389 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9V3G7-1", "protein_name": "26S proteasome non-ATPase regulatory subunit 6", "gene_name": "Rpn7", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPAENLEEQGLEKNPNLELAQTKFLLTLAEYKQDAALKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNLGEMEVREANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHDLITRNIDKAKYLIEEGGDWDRRNRLKVYQGVYSVAVRDFKAAATFFLDTVSTFTSYELMDYPTFVRYTVYVAMIALPRNELRDKVIKGSEIQEVLHGLPDVKQFLFSLYNCQYENFYVHLAGVEKQLRLDYLIHPHYRYYVREMRILGYTQLLESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRVINI", "length": 389 }, "evidence": [ { "id": "F1SGF1", "url": "https://omabrowser.org/oma/group/F1SGF1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F1SGF1", "url": "https://www.uniprot.org/uniprotkb/F1SGF1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "proteasome regulatory particle", "id": "GO:0005838", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005838", "evidence": [ { "database": "UniProtKB", "id": "F1SGF1", "url": "https://www.uniprot.org/uniprotkb/F1SGF1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGF1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 450, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGF1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGF1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGF1" }, { "id": "PS50250", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50250" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PCI", "eco_id": "ECO_0000259", "start_pos": 254, "end_pos": 422, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGI2-1", "uniprot_ac": "F1SGI2", "uniprot_id": "F1SGI2_PIG", "mass": { "chemical_mass": 63809.0, "monoisotopic_mass": 63809.0 }, "refseq": { "ac": "XP_003355445", "name": "keratin, type II cuticular Hb4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355445" }, "gene_names": [ { "name": "KRT84", "type": "recommended", "evidence": [ { "id": "F1SGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" } ] }, { "name": "KRT84", "type": "synonym", "evidence": [ { "id": "XP_003355445", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355445" } ] } ], "protein_names": [ { "name": "Keratin 84", "type": "synonym", "evidence": [ { "id": "F1SGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGI2/entry#names_and_taxonomy" } ] }, { "name": "keratin, type II cuticular Hb4", "type": "synonym", "evidence": [ { "id": "XP_003355445", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355445" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGI2", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRT84", "url": "https://www.uniprot.org/uniprotkb/F1SGI2", "locus": { "chromosome": "5", "start_pos": 17698336, "end_pos": 17707023, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000241", "url": "https://www.ensembl.org/id/ENSSSCG00000000241" } ] } } ], "crossref": [ { "id": "F1SGI2", "url": "https://alphafold.ebi.ac.uk/entry/F1SGI2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000241", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000241", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100622023", "url": "https://www.ncbi.nlm.nih.gov/gene/100622023", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622023", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622023", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EQKCARS", "url": "https://omabrowser.org/oma/group/EQKCARS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGI2", "url": "https://www.orthodb.org/?gene=F1SGI2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003355445", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355445", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGI2", "url": "https://www.uniprot.org/uniprotkb/F1SGI2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGI2-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCRSYRVSSGRRVGNFSSCSAMTHQNLNRFRTSSVSCRSGPSFRGLGGFGSRSVISFGSCSPRIAAVGPRPIRCGVGFGVGSGMAFGYGDGSGAGLGFGSGSCVGLGFGAGSGLGYGFGGPGFGYRVGGIGVPAAPSITAVTVNQSLLTPLNLEIDPNAQRVKRDEKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWSFLQEQKGTRSNLEPLFENYITNLRHQLDVVSSDRARLEAERNNMQDVLEGFKKKYEEEVVLRANAENEFVALKKDVDSAFLNKSDMEANVDSLTQEIDFLKTLYMAEIQLLQSHISETSVIVKMDNSRDLNVDGIIADIKAQYEEIARRSRADAESWYQTKYEEMRVTAGQHCDNLRSTRDEINELNRLIQRLKAEIEHAKAQRAKLEAAVAQAEQQGEAALNDAKSKLADLEGALQQAKQDMARQLREYQELMNVKLALDIEIATYRRLLEGEEIRICEGVGPVDISVSSSRGGVVCGPDALVTSSGLSRGGVAFSGGSSIRTSGFCSSSVGGSRVSAGCGGGSVLVGEACAPSVPCPLPTEGGFSSCSGGRSSRGASVRFVSTTTSHRTKY", "length": 593, "header": "tr|F1SGI2-1|F1SGI2_PIG Isoform 1 of Keratin 84 OS=Sus scrofa OX=9823 GN=KRT84 PE=1 SV=3 CANONICAL=F1SGI2-1" }, "isoforms": [ { "isoform_ac": "F1SGI2-1", "url": "https://www.uniprot.org/uniprotkb/F1SGI2/entry#F1SGI2-1", "sequence": { "sequence": "MSCRSYRVSSGRRVGNFSSCSAMTHQNLNRFRTSSVSCRSGPSFRGLGGFGSRSVISFGSCSPRIAAVGPRPIRCGVGFGVGSGMAFGYGDGSGAGLGFGSGSCVGLGFGAGSGLGYGFGGPGFGYRVGGIGVPAAPSITAVTVNQSLLTPLNLEIDPNAQRVKRDEKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWSFLQEQKGTRSNLEPLFENYITNLRHQLDVVSSDRARLEAERNNMQDVLEGFKKKYEEEVVLRANAENEFVALKKDVDSAFLNKSDMEANVDSLTQEIDFLKTLYMAEIQLLQSHISETSVIVKMDNSRDLNVDGIIADIKAQYEEIARRSRADAESWYQTKYEEMRVTAGQHCDNLRSTRDEINELNRLIQRLKAEIEHAKAQRAKLEAAVAQAEQQGEAALNDAKSKLADLEGALQQAKQDMARQLREYQELMNVKLALDIEIATYRRLLEGEEIRICEGVGPVDISVSSSRGGVVCGPDALVTSSGLSRGGVAFSGGSSIRTSGFCSSSVGGSRVSAGCGGGSVLVGEACAPSVPCPLPTEGGFSSCSGGRSSRGASVRFVSTTTSHRTKY", "length": 593, "header": "tr|F1SGI2-1|F1SGI2_PIG Isoform 1 of Keratin 84 OS=Sus scrofa OX=9823 GN=KRT84 PE=1 SV=3 CANONICAL=F1SGI2-1" }, "locus": { "chromosome": "5", "start_pos": 17706941, "end_pos": 17699118, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000260.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000260.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000256.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000256.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGI2", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622023", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622023", "resource": "KEGG Pathway" }, { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K0I4-1", "protein_name": "Keratin 84", "gene_name": "Krt84", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSCRSYRVSSGRRVGNFSSCSAMTPQHLNRFRASSVSCRSGPGFRGLGGFGSRSVINFGSSSPRIAVGCSRPIRYGVGFGAGNGIAFGSGDGSGICLGYRAGSGVGLGFGAGSCLGYGFGGPGFGGPGFGGPGFGYRIGGIGGPSAPAITAVTVNQSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWSFLQDQKCARSNLEPLFDNYITSLRRQLDVLVSDQARLQAERNHMQDILEGFKKKYEEEVVFRANAENEFVALKKDVDAAFLNKSDLEANVDALAQEIEFLKALYLEEIQLLQSHISETSVIVKMDNSRDLNLDGIIAEVKAQYEEVARRSRADVESWYQTKYEEMRVTAGQHCDNLRNTRDEINELTRLIQRLKTEIEHTKAQCAKLEAAVAEAEQQGEAALNDAKCKLTDLEGALQQAKQDMARQLREYQELMNAKLALDIEIVTYRKLLEGEEIRICEGVGPVNISVSSSRGGVLCGPESLVCGSGLSHSGGVTFSSSSGIRATGGILASSSLRAGGDLLSSGTRGGSVLVGDACAPSIPCALPTEGGFSSCSGGRGNRSSSIRFSSTTTSRRSRY", "length": 608 }, "evidence": [ { "id": "F1SGI2", "url": "https://omabrowser.org/oma/group/F1SGI2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N362-1", "protein_name": "Keratin 84", "gene_name": "KRT84", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSCRSYRVSSGRCVGNFSSCSAVTPQNLNRFRASSVSCRSGPSFRGLSSFGSRSVISFGSCSPRIAAVCPRPSCYGVGFGDGSGAGLGFGVGSCVGLGFGARSGLGYGFCNPGFGYRVGGIGGPAAPSITAVTVNQSLLTPLNLEIDPNAQRVKRDEKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWNFLQEQKCAKSNLEPLFENYITNLRRQLDVVNSDQARLEAERNHMQDVLEGFKKKYEEEVGLRASAENEFVALKKDVDTAFLSKADLEANVDTLIQEIDFLKTLYEAEIQLLQSHISETSVIVKMDNSRDLNVDGIIADIKAQYEEIARRSRADAEAWYQTKYEEMRVTAGQHCDNLRNTRDEMNELNRLIQRLKAEIEHAKAQRCKLEAAVAEAEQQGEAALNDAKCKLAELEGALQQAKQDMARQLKEYQELMNVKLALDIEIATYRRLLEGEEIRICEGVGPVDIAVSSSRGGLVCGPESLYSSSSLCRGGVIISGSGSSSNIRSSGFCSSSVGGARVVGGGDLLGAGSRGGSVLVGEVCAPSVPCPLPTEGGFSSCSGGRSSRSSTVRFVSTTTSHRTKH", "length": 593 }, "evidence": [ { "id": "F1SGI2", "url": "https://omabrowser.org/oma/group/F1SGI2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3IIF3-1", "protein_name": "Keratin, type II cuticular Hb4", "gene_name": "Krt84", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSCRSYRVSSGHRVGSFSSCSAMTPQNLNRFQASSVSCRSGSGFRGLGCFGSRSVNFGSSSPRIAVGCSRPIRYGVGFGAGNGMAFGSGDGCGVGLGFRASSGVGLGFGAGSSLGYGFGGPAFGGPGFGYRIGGIGGPSAPSITTVTVNQSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWSFLQDQKCARSNLDPLFDNYITSLRRQLEVLVSDQARLQAERNHMQDILEGFKKKYEEEVGCRANAENEFVALKKDVDTAFLNKSDLEANVDALAQEVEFLKALYLEEIQLLQSHISETSVIVKMDNSRDLNLDGIIAEVKAQYEEVARRSRADVEAWYQTKYEEMRVTAGQHCDNLRNTRDEINELTRLIQRLKTEIEHSKAQCAKLEAAVAEAEQQGEAALNDAKCKLADLEGALQQAKQDMARQLREYQELMNAKLGLDIEIATYRQLLEGEEIRICEGVGPVNISVSSSRGGVLCGPESLVSGSSLSRNCGVTFSSSSGIRTTGGVLTSSCLRAGGDLLSSGARGGSVLVSDTCAPSIPCPLPTEGGFSSCSGGRGNRSSSVRFSSTTTSRRTRY", "length": 602 }, "evidence": [ { "id": "F1SGI2", "url": "https://omabrowser.org/oma/group/F1SGI2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q99M73-1", "protein_name": "Keratin, type II cuticular Hb4", "gene_name": "Krt84", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCRSYRVSSGRRVGSFSSCSAMAPQHLNRFRSSSVSCRSGPGFRGLGGFGSRSVINFGSSSPRIAVGCSRPVRCGVGFGAGSGMAFGSGDGLGFRASSGVGLGFGAGGCPSYGFGGPGFGGPGFGGPGFGYRIGGIGGPSAPAITAVTVNQSLLTPLNLEIDPNAQRVKRDEKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWSFLQEQKCARSNLEPLFDNYITNLRRQLDVLSSDQARLQAERNHLQDILEGFKKKYEEEVVFRANAENEFVALKKDVDAAFLNKSDLEANVDTLIQETEFLKALYHEEIEMLQSHISETSVIVKMDNSRDLNLDGIIAEVKAQYEEVARRSRADVESWYQTKYEEMRVTAGQHCDNLRSTRDEINELTRLIQRLKAEIEHTKAQCAKLEAAVAEAEQQGEAALNDAKCKLADLEGALQQAKQDMARQLREYQELMNVKLALDIEIVTYRRLLEGEEIRICEGVGPVNISVSSSRGGVLCGPELVSGSSLSHNGGVTFSTSSSIRATGGVLASSSLRAGGDLLSSGSRGGSVLVGDACAPSIPCALPTEGGFSSCSGGRGNRSSSVRFSSTTTSRRTRY", "length": 603 }, "evidence": [ { "id": "F1SGI2", "url": "https://omabrowser.org/oma/group/F1SGI2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NSB2-1", "protein_name": "Keratin, type II cuticular Hb4", "gene_name": "KRT84", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSCRSYRVSSGHRVGNFSSCSAMTPQNLNRFRANSVSCWSGPGFRGLGSFGSRSVITFGSYSPRIAAVGSRPIHCGVRFGAGCGMGFGDGRGVGLGPRADSCVGLGFGAGSGIGYGFGGPGFGYRVGGVGVPAAPSITAVTVNKSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDKVRFLEQQNKLLETKWSFLQEQKCIRSNLEPLFESYITNLRRQLEVLVSDQARLQAERNHLQDVLEGFKKKYEEEVVCRANAENEFVALKKDVDAAFMNKSDLEANVDTLTQEIDFLKTLYMEEIQLLQSHISETSVIVKMDNSRDLNLDGIIAEVKAQYEEVARRSRADAEAWYQTKYEEMQVTAGQHCDNLRNIRNEINELTRLIQRLKAEIEHAKAQRAKLEAAVAEAEQQGEATLSDAKCKLADLECALQQAKQDMARQLCEYQELMNAKLGLDIEIATYRRLLEGEESRLCEGVGPVNISVSSSRGGLVCGPEPLVAGSTLSRGGVTFSGSSSVCATSGVLASCGPSLGGARVAPATGDLLSTGTRSGSMLISEACVPSVPCPLPTQGGFSSCSGGRSSSVRFVSTTTSCRTKY", "length": 600 }, "evidence": [ { "id": "F1SGI2", "url": "https://omabrowser.org/oma/group/F1SGI2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGI2", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "F1SGI2", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "keratinization", "id": "GO:0031424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031424", "evidence": [ { "database": "UniProtKB", "id": "F1SGI2", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "F1SGI2", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" } ], "pmid": "" }, { "name": "regulation of keratinocyte differentiation", "id": "GO:0045616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045616", "evidence": [ { "database": "UniProtKB", "id": "F1SGI2", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "F1SGI2", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGI2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 593, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGI2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGI2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGI2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGI2" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 167, "end_pos": 478, "start_aa": "Glu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 16, "end_pos": 18 }, { "start_pos": 282, "end_pos": 284 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGK9-1", "uniprot_ac": "F1SGK9", "uniprot_id": "F1SGK9_PIG", "mass": { "chemical_mass": 67038.0, "monoisotopic_mass": 67038.0 }, "refseq": { "ac": "XP_001926497", "name": "2',5'-phosphodiesterase 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926497" }, "gene_names": [ { "name": "PDE12", "type": "recommended", "evidence": [ { "id": "F1SGK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ] }, { "name": "PDE12", "type": "synonym", "evidence": [ { "id": "XP_001926497", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926497" } ] } ], "protein_names": [ { "name": "2',5'-phosphodiesterase 12", "type": "recommended", "evidence": [ { "id": "F1SGK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGK9/entry#names_and_taxonomy" } ] }, { "name": "2',5'-phosphodiesterase 12", "type": "synonym", "evidence": [ { "id": "XP_001926497", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926497" } ] }, { "name": "3.1.13.4", "type": "synonym", "evidence": [ { "id": "F1SGK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGK9/entry#names_and_taxonomy" } ] }, { "name": "Mitochondrial deadenylase", "type": "synonym", "evidence": [ { "id": "F1SGK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGK9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PDE12", "url": "https://www.uniprot.org/uniprotkb/F1SGK9", "locus": { "chromosome": "13", "start_pos": 39402650, "end_pos": 39395541, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011465", "url": "https://www.ensembl.org/id/ENSSSCG00000011465" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011465", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011465", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157651", "url": "https://www.ncbi.nlm.nih.gov/gene/100157651", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036691", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036691", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157651", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157651", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FRLKSAC", "url": "https://omabrowser.org/oma/group/FRLKSAC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGK9", "url": "https://www.orthodb.org/?gene=F1SGK9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12121", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12121", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12121:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12121:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03372", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8983711", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8983711", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001926497", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926497", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGK9-1", "url": "https://www.uniprot.org/uniprotkb/F1SGK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWRLPGARAALRGVRTAVERHSRAEAATETAAGVMERAVVRCVPSEPKLSLSFALADGSHKNMQRDQSEPLGRALSRIATNALKGHAKAAAARKSRKNRPNAGGGGACAGSGPEPAAACEPVVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPSLTELQLPRYIMAGFPVCPKLGLEFGDPAGSLFRWYKETKPTAVEPEGGGPSSLSPSSPSPGWTETGVNERVYTPSNADIGLRLKLHCTPGNGQRFGPSRELESVCSVEAGPGTCTFDHRHLYTKKVTDDALIRTVSYNLLADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRDVFTDSLVPALEAFGLEGVFRIKQHEGLATFYRKSKFSLLSQHDIAFHEALQSDPLHKELLEKLVLYPAAQEKVLQRSSVLQVSVLQSTKDSSKKICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVVFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEERCNMSLTHFFKLKSACGEPAYTNYVGGFHGCLDYIFIDLNTLEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVCDLKWK", "length": 609, "header": "tr|F1SGK9-1|F1SGK9_PIG Isoform 1 of 2',5'-phosphodiesterase 12 OS=Sus scrofa OX=9823 GN=PDE12 PE=1 SV=1 CANONICAL=F1SGK9-1" }, "isoforms": [ { "isoform_ac": "F1SGK9-1", "url": "https://www.uniprot.org/uniprotkb/F1SGK9/entry#F1SGK9-1", "sequence": { "sequence": "MWRLPGARAALRGVRTAVERHSRAEAATETAAGVMERAVVRCVPSEPKLSLSFALADGSHKNMQRDQSEPLGRALSRIATNALKGHAKAAAARKSRKNRPNAGGGGACAGSGPEPAAACEPVVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPSLTELQLPRYIMAGFPVCPKLGLEFGDPAGSLFRWYKETKPTAVEPEGGGPSSLSPSSPSPGWTETGVNERVYTPSNADIGLRLKLHCTPGNGQRFGPSRELESVCSVEAGPGTCTFDHRHLYTKKVTDDALIRTVSYNLLADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRDVFTDSLVPALEAFGLEGVFRIKQHEGLATFYRKSKFSLLSQHDIAFHEALQSDPLHKELLEKLVLYPAAQEKVLQRSSVLQVSVLQSTKDSSKKICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVVFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEERCNMSLTHFFKLKSACGEPAYTNYVGGFHGCLDYIFIDLNTLEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVCDLKWK", "length": 609, "header": "tr|F1SGK9-1|F1SGK9_PIG Isoform 1 of 2',5'-phosphodiesterase 12 OS=Sus scrofa OX=9823 GN=PDE12 PE=1 SV=1 CANONICAL=F1SGK9-1" }, "locus": { "chromosome": "13", "start_pos": 39398945, "end_pos": 39395641, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012546.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012546.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012217.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012217.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157651", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157651", "resource": "KEGG Pathway" }, { "id": "R-SSC-8983711", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8983711", "resource": "Reactome", "description": "OAS antiviral response" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A6Z8-1", "protein_name": "2',5'-phosphodiesterase 12", "gene_name": "PDE12", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWRGLRAALGWLSRLGGGGVPPGAMEPAERAVVRCVPSEPKLSLQLVLPDGSARYMQRDQAEPLGRALARLATNAAKGRAKAGKKSKKPRAEDGEAGEAELPEVRLFSRDGRAVSEEVPNAAAWQDGAVLQVGAARYRVERNPPALTELRLPRSLLAGFPVCPKVSAEFAAPQHCLFRWYRERRPRGDGEGPAWEEEREPEGGERVFTPSNALVGLRLKLRCTPGDGTRRFGAPREVESSGPVEAGPGVCTFDARHLYTRKVCGRGSVRAVSYNILADAYAQTEFSRTVLYPYCAPYALEVDYRQNLLKKELAGYNADLICLQEVDKSVFADSLAPALDAFGLEGLFKIKEKQHEGLATFYRRDKFSLLSRHDITFSEALLSEPLHAELRDRLGRYPAVRDKVLQRSSVLQVSVLQSETDPSRKLCVANTHLYWHPKGGNIRLIQIAVALSHIKYVACDLYPNIPLIFCGDFNSTPSSGTYGFINTGGIAEDHEDWASNGEEERCNMPLSHPFKLQSACGEPAYTNYVGGFYGCLDYVFIDQNALEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVCDLKWK", "length": 584 }, "evidence": [ { "id": "F1SGK9", "url": "https://omabrowser.org/oma/group/F1SGK9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q08DF7-1", "protein_name": "2',5'-phosphodiesterase 12", "gene_name": "PDE12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWRLPGVRAALRGVRTAVERRSRTEAASETSVGAMERAVVRCVPSEPKLSLSFALADGSHKNMQRDQSEPLGRALSRIATNALKGHAKVAAAKKSRKNRPNAGSGVACAGPGPEPAAACEPVVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPAFTELQLPRYIMAGFPVCPKLGVEFGDPTGSLFRWYKETKPRAAEPEGGGPSSSSPSSPSPGWTETGVDERVYTPSNADIGLRLKLHCTPGNGQRFGPSRELESVCPVEAGPGTCTFDHRHLYTKKVTDDALIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRCVFTDSLMPALEAFGLEGVFRIKQHEGLATFYRKSKFSLLSQHDIAFHEALQSDPLHKELLEKLALYPSAQERVLQRSSVVQVSVLQSTKDSSKKICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSIAEDHEDWTSNGEEERCNMSLSHFFKLKSACGEPAYTNYVGGFHGCLDYIFIDLHALEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVCDLKWK", "length": 609 }, "evidence": [ { "id": "F1SGK9", "url": "https://omabrowser.org/oma/group/F1SGK9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3TIU4-1", "protein_name": "2',5'-phosphodiesterase 12", "gene_name": "Pde12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRLPGRSALRGVRSVVERRSRAEAGTHEAVRAMERAVVRCVPSEPKLSLSFALADGSHKNMQRDQSEPLGRALSRIATNALKGHAKVAAAKKSRKNRAHSSGGAACEATGPEPVATCEPVVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPTFTELQLPRYIMAGFPVCPKLGVEFGDPASSVFRWYKEVKPGAAEPGDSGPASSSHSSQPSAWIETGVDERVYTPCNADIGLRLRLHCTPGNGQRFGPSRELESLCPVEAGPGTCTFDHRHLYTKKVTEDSFIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIKQHEGLATFYRKSKFRLLSQHDISFQEALKSDPLHKELLEKLALNPLAQEKVLQRSSVLQISVLQSTTDSSKKICVANTHLYWHPKGGYIRLIQMEVALVHIRHVSRDLYPGIPVIFCGDFNSTPSTGMYHFVISGSIAEDHEDWASNGEEERCSMPLSHCFKLKSACGEPAYTNYVGGFHGCLDYIFIDLNTLEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVCDLKWK", "length": 608 }, "evidence": [ { "id": "F1SGK9", "url": "https://omabrowser.org/oma/group/F1SGK9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6AXQ5-1", "protein_name": "2',5'-phosphodiesterase 12", "gene_name": "Pde12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWRLPGRAALRGVRSVVEQRSPAEATTHEAVRAMERAVVRCVPSEPKLSLSFALADGSHKNMQRDQSEPLGRALSRIATNALKGHAKVAAAKKSRKNRAHSSGGAACAATGSEPAATCEPVVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPAFTELQLPRYIMAGFPVCPKLGLEFGDPASSVFRWYKEVKPGAAEPGDSGLASSSHSLQSSAWIETGVDERVYTPCNADIGLRLKLHCTPGNGQRFGPSRELESVCPVEAGPGTCTFDHRHLYTKKVTEDSFIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIKQHEGLATFYRKSKFRLLSQHDISFQEALKSDPLHKELLEKLALNPLAQEKVLQRSSVLQISVLQSTTDSSKKICVANTHLYWHPKGGYIRLIQMAAALVHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSVPEDHEDWASNGEEERCGMSLTHCFKLKSACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVCDLKWK", "length": 608 }, "evidence": [ { "id": "F1SGK9", "url": "https://omabrowser.org/oma/group/F1SGK9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6L8Q7-1", "protein_name": "2',5'-phosphodiesterase 12", "gene_name": "PDE12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWRLPGARAALRVIRTAVEKLSRAEAGSQTAAGAMERAVVRCVPSEPKLSLSFALADGSHKNMQRDQSEPLGRVLSRIATNALKGHAKAAAAKKSRKSRPNASGGAACSGPGPEPAVFCEPVVKLYYREEAVAEDVLNVDAWQDGAVLQIGDVKYKVERNPPAFTELQLPRYIMAGFPVCPKLSLEFGDPASSLFRWYKEAKPGAAEPEVGVPSSLSPSSPSSSWTETDVEERVYTPSNADIGLRLKLHCTPGDGQRFGHSRELESVCVVEAGPGTCTFDHRHLYTKKVTEDALIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQKELTGYNADVICLQEVDRAVFSDSLVPALEAFGLEGVFRIKQHEGLATFYRKSKFSLLSQHDISFYEALESDPLHKELLEKLVLYPSAQEKVLQRSSVLQVSVLQSTKDSSKRICVANTHLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSIPEDHEDWASNGEEERCNMSLTHFFKLKSACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVCDLKWK", "length": 609 }, "evidence": [ { "id": "F1SGK9", "url": "https://omabrowser.org/oma/group/F1SGK9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8W0Z9-1", "protein_name": "Carbon catabolite repressor protein 4 homolog 1", "gene_name": "CCR4-1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYRWFRVQSDKKVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAASAATEGNDEEELPRLNSSGSGSGVLSTSVSLTNGSSSVYPSAITQKTGAGGETLVEVGRSKTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLISISGTDVTGHLDSNGRPLSMGTFTVLSYNILSDTYASSDIYSYCPTWALAWTYRRQNLLREIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTEAIIPVSQKKNALNRLVKDNVALIVVLEAKFGSQAADNPGKRQLLCVANTHVNVPHELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASAPHTLLAVGKVDPLHPDLMVDPLGILRPHSKLTHQLPLVSAYSQFAKMGGNVITEQQRRRLDPASSEPLFTNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCMPRARRNNIL", "length": 602 }, "evidence": [ { "id": "F1SGK9", "url": "https://omabrowser.org/oma/group/F1SGK9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "cellular response to interferon-alpha", "id": "GO:0035457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035457", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "cellular response to dsRNA", "id": "GO:0071359", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071359", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "cellular response to type II interferon", "id": "GO:0071346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071346", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "positive regulation of viral genome replication", "id": "GO:0045070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045070", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay", "id": "GO:0000288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000288", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "mitochondrial mRNA catabolic process", "id": "GO:0000958", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000958", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "regulation of mitochondrial mRNA stability", "id": "GO:0044528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044528", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "antiviral innate immune response", "id": "GO:0140374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140374", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "3'-5'-RNA exonuclease activity", "id": "GO:0000175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000175", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" }, { "name": "poly(A)-specific ribonuclease activity", "id": "GO:0004535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004535", "evidence": [ { "database": "UniProtKB", "id": "F1SGK9", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 498, "end_pos": 500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 511, "end_pos": 513, "annotation": "n_glycosylation_sequon" }, { "start_pos": 531, "end_pos": 533, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-9009950", "name": "PDE12 cleaves 2'-5' oligoadenylates", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-HSA-8983696" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9009950", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9009950" } ] } ], "reaction_participants": [ { "participant_id": "R-HSA-8983696", "participant_name": "2'-5' oligoadenylate [cytosol]", "crossref": [ { "id": "107918", "database": "PubChem Compound", "url": "" }, { "id": "7754", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" }, { "id": "PF21171", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21171" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "2',5'-phosphodiesterase 12-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 161, "end_pos": 271, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGK9" }, { "id": "PF03372", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03372" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Endonuclease/exonuclease/phosphatase", "eco_id": "ECO_0000259", "start_pos": 299, "end_pos": 599, "start_aa": "Ser", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 498, "end_pos": 500 }, { "start_pos": 511, "end_pos": 513 }, { "start_pos": 531, "end_pos": 533 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGL1-1", "uniprot_ac": "F1SGL1", "uniprot_id": "F1SGL1_PIG", "mass": { "chemical_mass": 81939.0, "monoisotopic_mass": 81939.0 }, "refseq": { "ac": "XP_020924655", "name": "interleukin-17 receptor D", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924655" }, "gene_names": [ { "name": "IL17RD", "type": "recommended", "evidence": [ { "id": "F1SGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL1" } ] }, { "name": "IL17RD", "type": "synonym", "evidence": [ { "id": "XP_020924655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924655" } ] } ], "protein_names": [ { "name": "Interleukin-17 receptor D", "type": "recommended", "evidence": [ { "id": "F1SGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL1/entry#names_and_taxonomy" } ] }, { "name": "Interleukin-17 receptor-like protein", "type": "synonym", "evidence": [ { "id": "F1SGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL1/entry#names_and_taxonomy" } ] }, { "name": "Sef homolog", "type": "synonym", "evidence": [ { "id": "F1SGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL1/entry#names_and_taxonomy" } ] }, { "name": "interleukin-17 receptor D", "type": "synonym", "evidence": [ { "id": "XP_020924655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924655" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGL1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IL17RD", "url": "https://www.uniprot.org/uniprotkb/F1SGL1", "locus": { "chromosome": "13", "start_pos": 38939316, "end_pos": 39006690, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011463", "url": "https://www.ensembl.org/id/ENSSSCG00000011463" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011463", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011463", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513377", "url": "https://www.ncbi.nlm.nih.gov/gene/100513377", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031951", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031951", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513377", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513377", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KNCKEDQ", "url": "https://omabrowser.org/oma/group/KNCKEDQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGL1", "url": "https://www.orthodb.org/?gene=F1SGL1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15583", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15583", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15583:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15583:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08357", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08357", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16742", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16742", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5674135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020924655", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924655", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGL1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGL1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPWLQLCSVFFTVNACLNGSQLAVAAGGSSRARGGDTCGWRGVGPASRNSGLHNITFRYDNCTTYLSPVGKHVIADAQNITISQYACHDQVAVTILWSPGALGIEFLKGFRVILEELKSEGRQCQQLILKDPKQLNSSFKRAGMESQPFLNMKFETDYFVKIVPFPSIKNESNYHPFFFRTRTCDLLLQPDNLACKPFWKPRNLNITQHGSDMQVSFDHAPHTFGFRFFYLHYKLKHEGLFKRKTCKQEQNTETTSCLLQNVSPGDYIIELVDDTNTTRKVMHYALKPVHSPWAGPIRAIAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESSESSTYTTALPRERLRPRPKVFLCYSSKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWVIQKIHESQFIIVVCSKGMKYFVDKKNYKHKGCGRSSGKGELFLVAVSAIAEKLRQAKQSSSGALSKFIAVYFDYSCEGDVPGVLDLSTKYKLMDNLPQLCSHLHSQGRRPQEPGPLPGRVSRRNYFRSKSGRSLYVAICNMHQFIDEEPDWFEKQFVPFHPTPLRHREPVLEKFDSGLVLNDVTGKPGPESDFGLKAEATGPGALADAHSEGLQFGPEEEGEAGPVAGAGSVLRPLLHTVKAASPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEDPPALPSKLLAPVTCKAEPGCCSYTGELHTVAPL", "length": 737, "header": "tr|F1SGL1-1|F1SGL1_PIG Isoform 1 of Interleukin-17 receptor D OS=Sus scrofa OX=9823 GN=IL17RD PE=4 SV=3 CANONICAL=F1SGL1-1" }, "isoforms": [ { "isoform_ac": "F1SGL1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1/entry#F1SGL1-1", "sequence": { "sequence": "MAPWLQLCSVFFTVNACLNGSQLAVAAGGSSRARGGDTCGWRGVGPASRNSGLHNITFRYDNCTTYLSPVGKHVIADAQNITISQYACHDQVAVTILWSPGALGIEFLKGFRVILEELKSEGRQCQQLILKDPKQLNSSFKRAGMESQPFLNMKFETDYFVKIVPFPSIKNESNYHPFFFRTRTCDLLLQPDNLACKPFWKPRNLNITQHGSDMQVSFDHAPHTFGFRFFYLHYKLKHEGLFKRKTCKQEQNTETTSCLLQNVSPGDYIIELVDDTNTTRKVMHYALKPVHSPWAGPIRAIAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESSESSTYTTALPRERLRPRPKVFLCYSSKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWVIQKIHESQFIIVVCSKGMKYFVDKKNYKHKGCGRSSGKGELFLVAVSAIAEKLRQAKQSSSGALSKFIAVYFDYSCEGDVPGVLDLSTKYKLMDNLPQLCSHLHSQGRRPQEPGPLPGRVSRRNYFRSKSGRSLYVAICNMHQFIDEEPDWFEKQFVPFHPTPLRHREPVLEKFDSGLVLNDVTGKPGPESDFGLKAEATGPGALADAHSEGLQFGPEEEGEAGPVAGAGSVLRPLLHTVKAASPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEDPPALPSKLLAPVTCKAEPGCCSYTGELHTVAPL", "length": 737, "header": "tr|F1SGL1-1|F1SGL1_PIG Isoform 1 of Interleukin-17 receptor D OS=Sus scrofa OX=9823 GN=IL17RD PE=4 SV=3 CANONICAL=F1SGL1-1" }, "locus": { "chromosome": "13", "start_pos": 39006618, "end_pos": 38942342, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012544.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012544.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012215.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012215.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGL1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513377", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513377", "resource": "KEGG Pathway" }, { "id": "R-SSC-5674135", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "resource": "Reactome", "description": "MAP2K and MAPK activation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A9F2-1", "protein_name": "Interleukin-17 receptor D", "gene_name": "IL17RD", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPGRELGAFLLALLAFCGGRRLAEAAGGPGGRRGAAADACGGRGLSSVTKSNGLLNITFKYDNCTPYLNSVGKHVIGDVQNITISQYACYEQVAVTILWTANAIGIEYLRGFRVILEELKSEGRQCQQMVLRDPKQLSPSFKRTGMESNPFANLKFETDYFVKIVPFPSIKNESNYHPFFFRTRPCELLLQPENLICKPYWKPRNLNVTQQGFNMQVSFDHAPHNFGFRYYFLHYKLKHEGPFKQKTCKQDQNTDTTSCILQNVTPGDYIIELVDDTNTTRKTMHYALKPVHSPWAGPIRAIAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESSESSAYGAGLPVERLRPRPKVFICYSSKDCQKHINVIQCFAYFLQDFCGCEVALDLWEDLKICKESQKEWLIKKINESQFIIIVCSKGMKYFVEKKNWKHRGVTKDTGKGELFLFAVFTVAEKLRQAKQNSNDLCKFIAVYFDYSCEGDIPGILDLSTKYKLMDNLPQLYSHLHSRDLSVQDSEVFPVNVSKRNYFRSKSGRSLYVAICNMHQFIDQEPDWFEKQFIPFLPHPLHYSEPVMEKFDSGLVLNDLVNKQAADDDFYLKTDVNIISAGSSDSHCIIQHLNLGEDVETQDIQSGSSSVLRPLLHAVKASNLKDMPRDSGIYDSSVPSSELSLPLMEGLLTDQTETSSITGSVSSSSGLGEEEPPVITSTKFLLPGICKAELHCHIHTDELQAIAPL", "length": 741 }, "evidence": [ { "id": "F1SGL1", "url": "https://omabrowser.org/oma/group/F1SGL1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZGQ0-1", "protein_name": "Interleukin-17 receptor D", "gene_name": "Il17rd", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPWLQLCSFFFTVNACLNGSQLAVAAGGSGRARGADTCGWRGVGPASRNSGLYNITFRYDNCTTYLSPVGKHMIADAQNITISQYACNDQVAVTILWSPGALGIEFLKGFRVILEELRSEGRLCQQLVLKDPKQLNSSFKRTGMESQPFLNMKFETDYFVKIVPFPSIKNESDYHPFFFRTRACDLLLQPDNLACKPFWKPRNLNITQYGSDMQVSFHHAPQNFGFRGFHVHYKLKHEGPFRRRTCRQDQNTETTSCLLQNVSPGDYVIELVDDSNTTRKAAQYVVKPVQSPWAGPIRAVAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESPESSTYAAVLPRDRLRPRPKVFLCYSSKDGQNHMNVVQCFAYFLQEFCGCEVALDLWEDFSHCIEGQREWVIQKIHESQFIIVVCSKGMKYFVDKKSYRHKGGSRGGTGQGELFLVAVAAIAEKLRQAKQSSSAALSKFITVYFDYSCEGDVPCTLDLSTKYKLMDNLPELCSHLHSGEQEELGQHPGHSSRRNYFRSKAGRSLYVAICNMHQFIDEEPDWFEKQFVPFHPPPVRYQEPVLEKFDSGLVLNDVISKPGPESDFCLKVEASILGATGPADSYSYLENQHAGLDQDTEAQPACDGGPALQPLLHAVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSPDQIETSSLTESVSSSSGLGEEDPPTFPSKLLASGVSKGEHGFHSYTDELQAAAPL", "length": 740 }, "evidence": [ { "id": "F1SGL1", "url": "https://omabrowser.org/oma/group/F1SGL1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8JZL1-1", "protein_name": "Interleukin-17 receptor D", "gene_name": "Il17rd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPWLQLCSFFFTVNACLNGSQLAVAAGGSGRARGADTCGWRGVGPASRNSGLHNITFRYDNCTTYLNPGGKHAIADAQNITISQYACHDQVAVTILWSPGALGIEFLKGFRVILEELKSEGRQCQQLILKDPKQLNSSFRRTGMESQPFLNMKFETDYFVKIVPFPSIKNESNYHPFFFRTRACDLLLQPDNLACKPFWKPRNLNISQHGSDMHVSFDHAPQNFGFRGFHVLYKLKHEGPFRRRTCRQDQNTETTSCLLQNVSPGDYIIELVDDSNTTRKAAQYVVKSVQSPWAGPIRAVAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESPESSTYAAALPRDRLRPQPKVFLCYSNKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWAIQKIHESQFIIVVCSKGMKYFVDKKNFRHKGGSRGEAQGEFFLVAVAAIAEKLRQAKQSSSAALRKFIAVYFDYSCEGDVPCSLDLSTKYKLMDHLPELCAHLHSGEQEVLGQHPGHSSRRNYFRSKSGRSLYVAICNMHQFIDEEPDWFEKQFIPFQHPPVRYQEPVLEKFDSGLVLNDVISKPGPESDFCRKVEACVLGAAGPADSYSYLESQHVGLDQDTEAQPSCDSAPALQPLLHAVKAGSPSEMPRDSGIYDSSVPSSELSLPLMEGLSPDQIETSSLTESVSSSSGLGEEDPPTLPSKLLASGVSREHGCHSHTDELQALAPL", "length": 738 }, "evidence": [ { "id": "F1SGL1", "url": "https://omabrowser.org/oma/group/F1SGL1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NFM7-1", "protein_name": "Interleukin-17 receptor D", "gene_name": "IL17RD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPWLQLCSVFFTVNACLNGSQLAVAAGGSGRARGADTCGWRGVGPASRNSGLYNITFKYDNCTTYLNPVGKHVIADAQNITISQYACHDQVAVTILWSPGALGIEFLKGFRVILEELKSEGRQCQQLILKDPKQLNSSFKRTGMESQPFLNMKFETDYFVKVVPFPSIKNESNYHPFFFRTRACDLLLQPDNLACKPFWKPRNLNISQHGSDMQVSFDHAPHNFGFRFFYLHYKLKHEGPFKRKTCKQEQTTETTSCLLQNVSPGDYIIELVDDTNTTRKVMHYALKPVHSPWAGPIRAVAITVPLVVISAFATLFTVMCRKKQQENIYSHLDEESSESSTYTAALPRERLRPRPKVFLCYSSKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWVIQKIHESQFIIVVCSKGMKYFVDKKNYKHKGGGRGSGKGELFLVAVSAIAEKLRQAKQSSSAALSKFIAVYFDYSCEGDVPGILDLSTKYRLMDNLPQLCSHLHSRDHGLQEPGQHTRQGSRRNYFRSKSGRSLYVAICNMHQFIDEEPDWFEKQFVPFHPPPLRYREPVLEKFDSGLVLNDVMCKPGPESDFCLKVEAAVLGATGPADSQHESQHGGLDQDGEARPALDGSAALQPLLHTVKAGSPSDMPRDSGIYDSSVPSSELSLPLMEGLSTDQTETSSLTESVSSSSGLGEEEPPALPSKLLSSGSCKADLGCRSYTDELHAVAPL", "length": 739 }, "evidence": [ { "id": "F1SGL1", "url": "https://omabrowser.org/oma/group/F1SGL1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SGL1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SGL1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transforming growth factor beta receptor signaling pathway", "id": "GO:0030512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030512", "evidence": [ { "database": "UniProtKB", "id": "F1SGL1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1" } ], "pmid": "" }, { "name": "negative regulation of epithelial to mesenchymal transition", "id": "GO:0010719", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010719", "evidence": [ { "database": "UniProtKB", "id": "F1SGL1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "interleukin-17 receptor activity", "id": "GO:0030368", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030368", "evidence": [ { "database": "UniProtKB", "id": "F1SGL1", "url": "https://www.uniprot.org/uniprotkb/F1SGL1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" }, { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL1" }, { "id": "PS51534", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51534" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SEFIR", "eco_id": "ECO_0000259", "start_pos": 355, "end_pos": 509, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 171, "end_pos": 173 }, { "start_pos": 19, "end_pos": 21 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 262, "end_pos": 264 }, { "start_pos": 277, "end_pos": 279 }, { "start_pos": 55, "end_pos": 57 }, { "start_pos": 62, "end_pos": 64 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGL3-1", "uniprot_ac": "F1SGL3", "uniprot_id": "F1SGL3_PIG", "mass": { "chemical_mass": 38599.0, "monoisotopic_mass": 38599.0 }, "refseq": { "ac": "XP_020924637", "name": "leucine-rich repeat and transmembrane domain-containing protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924637" }, "gene_names": [ { "name": "LRTM1", "type": "recommended", "evidence": [ { "id": "F1SGL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL3" } ] }, { "name": "LRTM1", "type": "synonym", "evidence": [ { "id": "XP_020924637", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924637" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat and transmembrane domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1SGL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL3/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat and transmembrane domain-containing protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020924637", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924637" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGL3", "url": "https://www.uniprot.org/uniprotkb/F1SGL3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRTM1", "url": "https://www.uniprot.org/uniprotkb/F1SGL3", "locus": { "chromosome": "13", "start_pos": 36869494, "end_pos": 36881013, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011461", "url": "https://www.ensembl.org/id/ENSSSCG00000011461" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011461", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011461", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106505617", "url": "https://www.ncbi.nlm.nih.gov/gene/106505617", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ITAKYHR", "url": "https://omabrowser.org/oma/group/ITAKYHR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45773", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45773", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45773:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45773:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020924637", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924637", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGL3", "url": "https://www.uniprot.org/uniprotkb/F1SGL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGL3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGELSLLSSMIFLFPVVCGCPESCRCHSPSNSVDCSRQGLAEIPPGLPPQTLTLHLQDNQIHELPAFAFKSVPKLTTLNLYNNSLSNLTPGVFHGLQHLRILNLTQNSLHSLESRLFHSLPQLRELYLSSNNISHLPTSLGEHWENLTVFAIQQNRLQQLDRALLESMPRVRRLSLRDNLWKCNCYLLSLKLWLETFIYKGGIMDSVICASPDIWKGKDLLKIPHELYQPCPFPSPDLESSQVQQPGAVHQVVPRPPESHGVGERDHWKCEIKPKLRPANLRHAMATIVITGVVCGIVCLMMLAAAIYGCTYAAITAQYREGRLAQANEPVKTEGKELFDSSPA", "length": 345, "header": "tr|F1SGL3-1|F1SGL3_PIG Isoform 1 of Leucine-rich repeat and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=LRTM1 PE=4 SV=3 CANONICAL=F1SGL3-1" }, "isoforms": [ { "isoform_ac": "F1SGL3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL3/entry#F1SGL3-1", "sequence": { "sequence": "MEGELSLLSSMIFLFPVVCGCPESCRCHSPSNSVDCSRQGLAEIPPGLPPQTLTLHLQDNQIHELPAFAFKSVPKLTTLNLYNNSLSNLTPGVFHGLQHLRILNLTQNSLHSLESRLFHSLPQLRELYLSSNNISHLPTSLGEHWENLTVFAIQQNRLQQLDRALLESMPRVRRLSLRDNLWKCNCYLLSLKLWLETFIYKGGIMDSVICASPDIWKGKDLLKIPHELYQPCPFPSPDLESSQVQQPGAVHQVVPRPPESHGVGERDHWKCEIKPKLRPANLRHAMATIVITGVVCGIVCLMMLAAAIYGCTYAAITAQYREGRLAQANEPVKTEGKELFDSSPA", "length": 345, "header": "tr|F1SGL3-1|F1SGL3_PIG Isoform 1 of Leucine-rich repeat and transmembrane domain-containing protein 1 OS=Sus scrofa OX=9823 GN=LRTM1 PE=4 SV=3 CANONICAL=F1SGL3-1" }, "locus": { "chromosome": "13", "start_pos": 36880801, "end_pos": 36870498, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052800.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052800.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035674.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035674.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGL3", "url": "https://www.uniprot.org/uniprotkb/F1SGL3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A2N8-1", "protein_name": "Leucine-rich repeat and transmembrane domain-containing protein 1", "gene_name": "ENSRNOG00000067759", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLDEGICCRAAMKGALLLVSSVGILLPGVGSCPKKCLCHPSSNSVDCSGQGLSTIPPELPPWTVTLLLQDNRIHWLPALAFKSVSLLTTLNLSNNSLSNLAAEAFYGLAHLQVLNVTQNSLLSIESSFAQVMPGLRELDLSSNSLSVLPTSLGKPWENLTMFAVQQNHLLHLDRELLEAMPKLRLVLLKGNPWKCDCHLLGLKLWLERFIFEGGETDGAICRLPEPWKGKDLLSIPHELYKPCPLRHQNLVPSLVQQPGSVPQDAQKSPENNSGQHDPLECENRPKPKPTNLRHAVATVVITGVVCGIVCLMMLAAAIYGCTYAAITAQYQGRPLAPTRKSEKMGSEEPMDSSPA", "length": 355 }, "evidence": [ { "id": "F1SGL3", "url": "https://omabrowser.org/oma/group/F1SGL3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58G627-1", "protein_name": "Leucine-rich repeat and transmembrane domain-containing protein 1 isoform X1", "gene_name": "lrtm1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRRSPLTCIRGMTTDSVSGDLLCCSAGGRSSPASVMAGAGDAQHKRTDLEFGCDQTCWTDSGSADRRNAPETMTGLVFAFSSLLLLHTASSCPKECSCDAKTVDCRGRGLYDIPRKLHQDTLELYLQNNRLRGLSSMSFRDTPNLQTLDLANNSISMLSPTSFLGLRSLKVLSLANNSIREVDRRLLVSIRNLTTLDLSFNTINSLPGALADSFHYLTHLFLHNNRLTKLDRIHLEALGSLKVLHLKGNPWRCDCHLIGLKLWLETFAFKGGVVDSITCVQPHLMLERDLRLVPYELFHACMITSYSYLFANIHYMDSKHRTLSGQLYPSPRAPSGGDFSPAGDPILPECEAKQRSRPANYRHAIATVVITGVVCGIVCLMMLAAAVYGCAYAAITAKYQRELKKKAKETAGEEQKNIERDQDKEPLE", "length": 428 }, "evidence": [ { "id": "F1SGL3", "url": "https://omabrowser.org/oma/group/F1SGL3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BXQ3-1", "protein_name": "Leucine-rich repeat and transmembrane domain-containing protein 1", "gene_name": "Lrtm1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNEGLCCGAWAMKGTLLLVSSVGLLLPGVGSCPMKCLCHPSSNSVDCSGQGLSKVPRDLPPWTVTLLLQDNRIHWLPALAFQSVSLLSTLNLSNNSLSNLAAEAFYGLPHLRVLNVTQNSLLSIESSFAHALPGLRELDLSSNSLRILPTSLGKPWENLTVFAVQQNHLLHLDRELLEAMPKVRLVLLKDNPWICDCHLLGLKLWLERFTFQGGETDGAICRLPEPWQGKALLSIPHELYQPCSLPSQDLAPSLVQQPGSAPQDAQKSHENSSGQQDPLECEAKPKPKPTNLRHAVATVVITGVVCGIVCLMMLAAAIYGCTYAAITAQYQGRPLASARKSEKMGSKELMDSSSA", "length": 356 }, "evidence": [ { "id": "F1SGL3", "url": "https://omabrowser.org/oma/group/F1SGL3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HBL6-1", "protein_name": "Leucine-rich repeat and transmembrane domain-containing protein 1", "gene_name": "LRTM1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGELLLFSSVIVLLQVVCSCPDKCYCQSSTNFVDCSQQGLAEIPSHLPPQTRTLHLQDNQIHHLPAFAFRSVPWLMTLNLSNNSLSNLAPGAFHGLQHLQVLNLTQNSLLSLESRLFHSLPQLRELDLSSNNISHLPTSLGETWENLTILAVQQNQLQQLDRALLESMPSVRLLLLKDNLWKCNCHLLGLKLWLEKFVYKGGLTDGIICESPDTWKGKDLLRIPHELYQPCPLPAPDPVSSQAQWPGSAHGVVLRPPENHNAGERELLECELKPKPRPANLRHAIATVIITGVVCGIVCLMMLAAAIYGCTYAAITAQYHGGPLAQTNDPGKVEEKERFDSSPA", "length": 345 }, "evidence": [ { "id": "F1SGL3", "url": "https://omabrowser.org/oma/group/F1SGL3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SGL3", "url": "https://www.uniprot.org/uniprotkb/F1SGL3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGL3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL3" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 54, "start_aa": "Gly", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 133, "end_pos": 135 }, { "start_pos": 147, "end_pos": 149 }, { "start_pos": 83, "end_pos": 85 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGL5-1", "uniprot_ac": "F1SGL5", "uniprot_id": "F1SGL5_PIG", "mass": { "chemical_mass": 149623.0, "monoisotopic_mass": 149623.0 }, "refseq": {}, "gene_names": [ { "name": "CARMIL3", "type": "recommended", "evidence": [ { "id": "F1SGL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ] } ], "protein_names": [ { "name": "Capping protein, Arp2/3 and myosin-I linker protein 3", "type": "recommended", "evidence": [ { "id": "F1SGL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL5/entry#names_and_taxonomy" } ] }, { "name": "Capping protein regulator and myosin 1 linker protein 3", "type": "synonym", "evidence": [ { "id": "F1SGL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL5/entry#names_and_taxonomy" } ] }, { "name": "Leucine-rich repeat-containing protein 16B", "type": "synonym", "evidence": [ { "id": "F1SGL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CARMIL3", "url": "https://www.uniprot.org/uniprotkb/F1SGL5", "locus": { "chromosome": "7", "start_pos": 75222521, "end_pos": 75241277, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002012", "url": "https://www.ensembl.org/id/ENSSSCG00000002012" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002012", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002012", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051279", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051279", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24112:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24112:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16000", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16000", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17888", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17888", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0ABB5UPG7", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPG7-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPG9", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPG9-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPG9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGL5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKSSAELTRELQDSIRRCLSQGAVLQQHRVKLETKPKKFEDRVLALTSWRLHIFPLKVPAKVESSFNVLEIRAFNTLSQNQILVETERGMVSLRLPSAESVDQVTRHVSSALSKVCPGPGSLIRRGNADTPEGPRDTSPNSETSTSTTHSVCGGFSETYAALCDYNGLHCREEVQWDVDTIYHAEDNREFNLLDFSHLESRDLALMVAALAYNQWFTKLYCKDLRLGSEVLEQVLHTLSKSGSLEELVLDNAGLKTDFVQKLAGVFGENGSCVLHALTLSHNPIEDKGFLSLSQQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANPAFASSLRYLDLSKNPGLLATDEANALYSFLAQPNALVHLDLAGTDCAIDSLLGALLHGCCSHLTYLNLARNSCSHRKGREAPAAFKQFFSSAYTLSHVNLSATRLPLEALRALLQGLSLNSHLSDLHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGFDSDLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEILHKLVQLIQEEDCSLQSLSVADSRLKLRTSILINALGSNTCLAKVDLSGNGMEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFMSFPVSDISQAYRSAPERTEDVWQKIQWCLVRNNHSQTCPQEQAFRLQQGLVTSSAEQMLQRLCGRVQEEVRALRLCPLEPVQDELLYARDLIKDAKNSRALFPSLYELGHMLANDGPVRQRLESVASEVSKAVDKELQVILESMVSLTQELCPVAMRVAEGHNKMLSNVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNSIVDEILQELYHSHKSLARHLAQLRTLSDPPGGTGQGQDLSSRGRGRNHDLEETTDDELGTNIDTMAIKKQKRCRKIRPVSAFISGSPQDMESQLGSLGIPPGWFSGLGSSQPTASGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPGPGRPSVPVPGSRQENGMATRLDEGLEDFFSRRVMDESSSYPRTLRTLRPGLSEPPLPPLQKKRRRGLFHFRRPRSFKGDRGPGSPTTGLLLPPPPPPPPTQESPSPDPPSLGNNSSPCWSPEEDSSLVPTFGGGQGPSFRRKMGTEGAEPGEGGQAPATAQQPRVHGVALPGLGRAKGWSFDGKREGTGPDLEGSVQAWQKRRSSDDAGPGAWKPPPPPQSTKPSFSAMRRAEATWHIAEESAPNPSCKSPSPASQDGEEEREGALFAERPAPANTKLQDPPLAPRPPKPVAVPRGRRPPQEPGSREEAEAGGAAPGMNKPRLRLGSQQDQEEPEVQGPPDPGRRTAPLKPKRTRRAQSCDKLEPDRRRPPDSTGTSEPGTD", "length": 1370, "header": "tr|F1SGL5-1|F1SGL5_PIG Isoform 1 of Capping protein, Arp2/3 and myosin-I linker protein 3 OS=Sus scrofa OX=9823 GN=CARMIL3 PE=3 SV=3 CANONICAL=F1SGL5-1" }, "isoforms": [ { "isoform_ac": "A0ABB5UPG7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL5/entry#A0ABB5UPG7-1", "sequence": { "sequence": "MAKSSAELTRELQDSIRRCLSQGAVLQQHRVKLETKPKKFEDRVLALTSWRLHIFPLKVPAKVESSFNVLEIRAFNTLSQNQILVETERGMVSLRLPSAESVDQVTRHVSSALSKVCPGPGSLIRRGNADTPEGPRDTSPNSETSTSTTHSVCGGFSETYAALCDYNGLHCREEVQWDVDTIYHAEDNREFNLLDFSHLESRDLALMVAALAYNQWFTKLYCKDLRLGSEVLEQVLHTLSKSGSLEELVLDNAGLKTDFVQKLAGVFGENGSCVLHALTLSHNPIEDKGFLSLSQQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANPAFASSLRYLDLSKNPGLLATDEANALYSFLAQPNALVHLDLAGTDCAIDSLLGALLHGCCSHLTYLNLARNSCSHRKGREAPAAFKQFFSSAYTLSHVNLSATRLPLEALRALLQGLSLNSHLSDLHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGFDSDLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEILHKLVQLIQEEDCSLQSLSVADSRLKLRTSILINALGSNTCLAKVDLSGNGMEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFMSFPVSDISQAYRSAPERTEDVWQKIQWCLVRNNHSQTCPQEQAFRLQQGLVTSSAEQMLQRLCGRVQEEVRALRLCPLEPVQDELLYARDLIKDAKNSRALFPSLYELGHMLANDGPVRQRLESVASEVSKAVDKELQVILESMVSLTQELCPVAMRVAEGHNKMLSNVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNSIVDEILQELYHSHKSLARHLAQLRTLSDPPGGTGQGQDLSSRGRGRNHDLEETTDDELGTNIDTMAIKKQKRCRKIRPVSAFISGSPQDMESQLGSLGIPPGWFSGLGSSQPTASGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPGPGRPSQVPVPGSRQENGMATRLDEGLEDFFSRRVMDESSSYPRTLRTLRPGLSEPPLPPLQKKRRRGLFHFRRPRSFKGDRGPGSPTTGLLLPPPPPPPPTQESPPAQIPRVLAITPPPAGAQRRTAALSPHLAGARGLPSAGRWALRGQSLGRGARPLQQHSSQGSMVSPFLGWEEPKVGASTGNERAQAQTWRAASRLGRNGALRTMQGLEPGSPPHRPKAPSRASVPCAARRPRGT", "length": 1227, "header": "tr|A0ABB5UPG7-1|A0ABB5UPG7_PIG Computationally mapped isoform of Capping protein, Arp2/3 and myosin-I linker protein 3 OS=Sus scrofa OX=9823 GN=CARMIL3 PE=3 SV=1 CANONICAL=F1SGL5-1" }, "locus": { "chromosome": "7", "start_pos": 75241097, "end_pos": 75225433, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107713.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107713.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082102.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082102.1" } ] } }, { "isoform_ac": "A0ABB5UPG9-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL5/entry#A0ABB5UPG9-1", "sequence": { "sequence": "MAKSSAELTRELQDSIRRCLSQGAVLQQHRVKLETKPKKFEDRVLALTSWRLHIFPLKVPAKVESSFNVLEIRAFNTLSQNQILVETERGMVSLRLPSAESVDQVTRHVSSALSKVCPGPGSLIRRGNADTPEGPRDTSPNSETSTSTTHSVCGGFSETYAALCDYNGLHCREEVQWDVDTIYHAEDNREFNLLDFSHLESRDLALMVAALAYNQWFTKLYCKDLRLGSEVLEQVLHTLSKSGSLEELVLDNAGLKTDFVQKLAGVFGENGSCVLHALTLSHNPIEDKGFLSLSQQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANPAFASSLRYLDLSKNPGLLATDEANALYSFLAQPNALVHLDLAGTDCAIDSLLGALLHGCCSHLTYLNLARNSCSHRKGREAPAAFKQFFSSAYTLSHVNLSATRLPLEALRALLQGLSLNSHLSDLHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGFDSDLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEILHKLVQLIQEEDCSLQSLSVADSRLKLRTSILINALGSNTCLAKVDLSGNGMEDIGAKMLSKALQINSSLSNHTLRFMSFPVSDISQAYRSAPERTEDVWQKIQWCLVRNNHSQTCPQEQAFRLQQGLVTSSAEQMLQRLCGRVQEEVRALRLCPLEPVQDELLYARDLIKDAKNSRALFPSLYELGHMLANDGPVRQRLESVASEVSKAVDKELQVILESMVSLTQELCPVAMRVAEGHNKMLSNVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNSIVDEILQELYHSHKSLARHLAQLRTLSDPPGGTGQGQDLSSRGRGRNHDLEETTDDELGTNIDTMAIKKQKRCRKIRPVSAFISGSPQDMESQLGSLGIPPGWFSGLGSSQPTASGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPGPGRPSVPVPGSRQENGMATRLDEGLEDFFSRRVMDESSSYPRTLRTLRPGLSEPPLPPLQKKRRRGLFHFRRPRSFKGDRGPGSPTTGLLLPPPPPPPPTQESPSPDPPSLGNNSSPCWSPEEDSSLVPTFGGGQGPSFRRKMGTEGAEPGEGGQAPATAQQPRVHGVALPGLGRAKGWSFDGKREGTGPDLEGSVQAWQKRRSSDDAGPGAWKPPPPPQSTKPSFSAMRRAEATWHIAEESAPNPSCKSPSPASQDGEEEREGALFAERPAPANTKLQDPPLAPRPPKPVAVPRGRRPPQEPGSREEAEAGGAAPGMNKPRLRLGSQQDQEEPEVQGPPDPGRRTAPLKPKRTRRAQSCDKLEPDRRRPPDSTGTSEPGTD", "length": 1347, "header": "tr|A0ABB5UPG9-1|A0ABB5UPG9_PIG Computationally mapped isoform of Capping protein, Arp2/3 and myosin-I linker protein 3 OS=Sus scrofa OX=9823 GN=CARMIL3 PE=3 SV=1 CANONICAL=F1SGL5-1" }, "locus": { "chromosome": "7", "start_pos": 75241097, "end_pos": 75222852, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107711.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107711.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082101.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082101.1" } ] } }, { "isoform_ac": "F1SGL5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL5/entry#F1SGL5-1", "sequence": { "sequence": "MAKSSAELTRELQDSIRRCLSQGAVLQQHRVKLETKPKKFEDRVLALTSWRLHIFPLKVPAKVESSFNVLEIRAFNTLSQNQILVETERGMVSLRLPSAESVDQVTRHVSSALSKVCPGPGSLIRRGNADTPEGPRDTSPNSETSTSTTHSVCGGFSETYAALCDYNGLHCREEVQWDVDTIYHAEDNREFNLLDFSHLESRDLALMVAALAYNQWFTKLYCKDLRLGSEVLEQVLHTLSKSGSLEELVLDNAGLKTDFVQKLAGVFGENGSCVLHALTLSHNPIEDKGFLSLSQQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANPAFASSLRYLDLSKNPGLLATDEANALYSFLAQPNALVHLDLAGTDCAIDSLLGALLHGCCSHLTYLNLARNSCSHRKGREAPAAFKQFFSSAYTLSHVNLSATRLPLEALRALLQGLSLNSHLSDLHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGFDSDLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEILHKLVQLIQEEDCSLQSLSVADSRLKLRTSILINALGSNTCLAKVDLSGNGMEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFMSFPVSDISQAYRSAPERTEDVWQKIQWCLVRNNHSQTCPQEQAFRLQQGLVTSSAEQMLQRLCGRVQEEVRALRLCPLEPVQDELLYARDLIKDAKNSRALFPSLYELGHMLANDGPVRQRLESVASEVSKAVDKELQVILESMVSLTQELCPVAMRVAEGHNKMLSNVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNSIVDEILQELYHSHKSLARHLAQLRTLSDPPGGTGQGQDLSSRGRGRNHDLEETTDDELGTNIDTMAIKKQKRCRKIRPVSAFISGSPQDMESQLGSLGIPPGWFSGLGSSQPTASGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPGPGRPSVPVPGSRQENGMATRLDEGLEDFFSRRVMDESSSYPRTLRTLRPGLSEPPLPPLQKKRRRGLFHFRRPRSFKGDRGPGSPTTGLLLPPPPPPPPTQESPSPDPPSLGNNSSPCWSPEEDSSLVPTFGGGQGPSFRRKMGTEGAEPGEGGQAPATAQQPRVHGVALPGLGRAKGWSFDGKREGTGPDLEGSVQAWQKRRSSDDAGPGAWKPPPPPQSTKPSFSAMRRAEATWHIAEESAPNPSCKSPSPASQDGEEEREGALFAERPAPANTKLQDPPLAPRPPKPVAVPRGRRPPQEPGSREEAEAGGAAPGMNKPRLRLGSQQDQEEPEVQGPPDPGRRTAPLKPKRTRRAQSCDKLEPDRRRPPDSTGTSEPGTD", "length": 1370, "header": "tr|F1SGL5-1|F1SGL5_PIG Isoform 1 of Capping protein, Arp2/3 and myosin-I linker protein 3 OS=Sus scrofa OX=9823 GN=CARMIL3 PE=3 SV=3 CANONICAL=F1SGL5-1" }, "locus": { "chromosome": "7", "start_pos": 75241097, "end_pos": 75222852, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002251.6", "url": "https://www.ensembl.org/id/ENSSSCT00000002251.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002199.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002199.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1088, "start_aa": "Thr", "end_pos": 1088, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1088", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "pmid": "" }, { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "pmid": "" }, { "name": "regulation of Arp2/3 complex-mediated actin nucleation", "id": "GO:0034315", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034315", "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "pmid": "" }, { "name": "regulation of postsynapse assembly", "id": "GO:0150052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150052", "evidence": [ { "database": "UniProtKB", "id": "F1SGL5", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1101, "end_pos": 1103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1102, "end_pos": 1104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 429, "end_pos": 431, "annotation": "n_glycosylation_sequon" }, { "start_pos": 507, "end_pos": 509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 596, "end_pos": 598, "annotation": "n_glycosylation_sequon" }, { "start_pos": 607, "end_pos": 609, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 624, "end_pos": 626, "annotation": "n_glycosylation_sequon" }, { "start_pos": 663, "end_pos": 665, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" }, { "id": "PF16000", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16000" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CARMIL C-terminal", "eco_id": "ECO_0000259", "start_pos": 778, "end_pos": 1065, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL5" }, { "id": "PF17888", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CARMIL pleckstrin homology", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 118, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1088 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1101, "end_pos": 1103 }, { "start_pos": 1102, "end_pos": 1104 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 429, "end_pos": 431 }, { "start_pos": 507, "end_pos": 509 }, { "start_pos": 596, "end_pos": 598 }, { "start_pos": 607, "end_pos": 609 }, { "start_pos": 608, "end_pos": 610 }, { "start_pos": 624, "end_pos": 626 }, { "start_pos": 663, "end_pos": 665 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGL6-1", "uniprot_ac": "F1SGL6", "uniprot_id": "F1SGL6_PIG", "mass": { "chemical_mass": 61670.0, "monoisotopic_mass": 61670.0 }, "refseq": {}, "gene_names": [ { "name": "CPNE6", "type": "recommended", "evidence": [ { "id": "F1SGL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ] } ], "protein_names": [ { "name": "Copine-6", "type": "recommended", "evidence": [ { "id": "F1SGL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL6/entry#names_and_taxonomy" } ] }, { "name": "Copine VI", "type": "synonym", "evidence": [ { "id": "F1SGL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Calcium-dependent phospholipid-binding protein that plays a role in calcium-mediated intracellular processes. Binds phospholipid membranes in a calcium-dependent manner. Plays a role in dendrite formation by melanocytes.", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6#function" }, { "database": "UniProtKB", "id": "ARBA00055337", "url": "https://www.uniprot.org/uniprotkb/ARBA00055337#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CPNE6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6", "locus": { "chromosome": "7", "start_pos": 75213644, "end_pos": 75219031, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002011", "url": "https://www.ensembl.org/id/ENSSSCG00000002011" } ] } } ], "crossref": [ { "id": "F1SGL6", "url": "https://alphafold.ebi.ac.uk/entry/F1SGL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002011", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002011", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01459", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01459", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04047", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04047", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04048", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04048", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037768", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037768", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10857", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10857", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10857:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10857:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1483206", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483206", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDPEMAWVPEPPAMTGASRVELRVSCHGLLDRDTLTKPHPCVLLKLHSDEQWVEVDRTEVLRSCSSPVFSRVLALEYFFEEKQPLQFHVFDAEDGATSPRNDTFLGSTECTLGQIVSQTKVTKPLILKNGKNAGKSTITIVAEEVSGTNDYVQLTFRAHKLDNKDLFSKSDPFMEIYKTNGDQSDQLVWRTEVVKNNLNPSWEPFRLSLHSLCSCDVHRPLKFLVYDYDSSGKHDFIGEFTSTFQEMQEGTAKPGQEMQWDCINPKYRDKKKNYKSSGTVVLAQCTVEKVHTFLDYIMGGCQISFTVAIDFTASNGDPRSSQSLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVITSYRRCLPQIQLYGPTNVAPIINRVAGPAQREQSTGQATKYSVLLVLTDGVVSDMAETRAAIVRASHLPMSIIIVGVGNADFSDMRLLDGDDGPLRCPRGVPAARDIVQFVPFRDFKDAPPSALAKCVLAEVPRQVVEYYASQGISPGAPRPCTPATTPSPSP", "length": 556, "header": "tr|F1SGL6-1|F1SGL6_PIG Isoform 1 of Copine-6 OS=Sus scrofa OX=9823 GN=CPNE6 PE=1 SV=4 CANONICAL=F1SGL6-1" }, "isoforms": [ { "isoform_ac": "F1SGL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL6/entry#F1SGL6-1", "sequence": { "sequence": "MSDPEMAWVPEPPAMTGASRVELRVSCHGLLDRDTLTKPHPCVLLKLHSDEQWVEVDRTEVLRSCSSPVFSRVLALEYFFEEKQPLQFHVFDAEDGATSPRNDTFLGSTECTLGQIVSQTKVTKPLILKNGKNAGKSTITIVAEEVSGTNDYVQLTFRAHKLDNKDLFSKSDPFMEIYKTNGDQSDQLVWRTEVVKNNLNPSWEPFRLSLHSLCSCDVHRPLKFLVYDYDSSGKHDFIGEFTSTFQEMQEGTAKPGQEMQWDCINPKYRDKKKNYKSSGTVVLAQCTVEKVHTFLDYIMGGCQISFTVAIDFTASNGDPRSSQSLHCLSPRQPNHYLQALRAVGGICQDYDSDKRFPAFGFGARIPPNFEVSHDFAINFDPENPECEEISGVITSYRRCLPQIQLYGPTNVAPIINRVAGPAQREQSTGQATKYSVLLVLTDGVVSDMAETRAAIVRASHLPMSIIIVGVGNADFSDMRLLDGDDGPLRCPRGVPAARDIVQFVPFRDFKDAPPSALAKCVLAEVPRQVVEYYASQGISPGAPRPCTPATTPSPSP", "length": 556, "header": "tr|F1SGL6-1|F1SGL6_PIG Isoform 1 of Copine-6 OS=Sus scrofa OX=9823 GN=CPNE6 PE=1 SV=4 CANONICAL=F1SGL6-1" }, "locus": { "chromosome": "7", "start_pos": 75219031, "end_pos": 75213989, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002250.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002250.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002198.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002198.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1483206", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483206", "resource": "Reactome", "description": "Glycerophospholipid biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of dendrite extension", "id": "GO:1903861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903861", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "cellular response to calcium ion", "id": "GO:0071277", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071277", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "postsynaptic actin cytoskeleton organization", "id": "GO:0098974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098974", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "perikaryon", "id": "GO:0043204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043204", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "clathrin-coated endocytic vesicle", "id": "GO:0045334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045334", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" }, { "name": "phosphatidylserine binding", "id": "GO:0001786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001786", "evidence": [ { "database": "UniProtKB", "id": "F1SGL6", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGL6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 556, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGL6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGL6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL6" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 126, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGL7-1", "uniprot_ac": "F1SGL7", "uniprot_id": "F1SGL7_PIG", "mass": { "chemical_mass": 25877.0, "monoisotopic_mass": 25877.0 }, "refseq": {}, "gene_names": [ { "name": "NRL", "type": "recommended", "evidence": [ { "id": "F1SGL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ] } ], "protein_names": [ { "name": "Neural retina-specific leucine zipper protein", "type": "recommended", "evidence": [ { "id": "F1SGL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Acts as a transcriptional activator which regulates the expression of several rod-specific genes, including RHO and PDE6B. Also functions as a transcriptional coactivator, stimulating transcription mediated by the transcription factor CRX and NR2E3. Binds to the rhodopsin promoter in a sequence-specific manner.", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7#function" }, { "database": "UniProtKB", "id": "ARBA00055281", "url": "https://www.uniprot.org/uniprotkb/ARBA00055281#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NRL", "url": "https://www.uniprot.org/uniprotkb/F1SGL7", "locus": { "chromosome": "7", "start_pos": 75210529, "end_pos": 75206719, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002010", "url": "https://www.ensembl.org/id/ENSSSCG00000002010" } ] } } ], "crossref": [ { "id": "F1SGL7", "url": "https://alphafold.ebi.ac.uk/entry/F1SGL7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002010", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002010", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14718", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14718", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013592", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013592", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10129:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10129:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03131", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03131", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALPPSPLAMEYVNDFDLMKFEVKREPSEGQSGPPTASLGSTPYSSVPPSPTFSEPGTVGATEGPRPGLEELYWLATLQQQLGAGEALGLSPEEAAELLQCQGPVPVEGPHAYYPGSPEETGAQHAQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLAPSGGAGGHAHFFLR", "length": 237, "header": "tr|F1SGL7-1|F1SGL7_PIG Isoform 1 of Neural retina-specific leucine zipper protein OS=Sus scrofa OX=9823 GN=NRL PE=3 SV=4 CANONICAL=F1SGL7-1" }, "isoforms": [ { "isoform_ac": "F1SGL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGL7/entry#F1SGL7-1", "sequence": { "sequence": "MALPPSPLAMEYVNDFDLMKFEVKREPSEGQSGPPTASLGSTPYSSVPPSPTFSEPGTVGATEGPRPGLEELYWLATLQQQLGAGEALGLSPEEAAELLQCQGPVPVEGPHAYYPGSPEETGAQHAQLAERFSDAALVSMSVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLARERDLYKARCDRLAPSGGAGGHAHFFLR", "length": 237, "header": "tr|F1SGL7-1|F1SGL7_PIG Isoform 1 of Neural retina-specific leucine zipper protein OS=Sus scrofa OX=9823 GN=NRL PE=3 SV=4 CANONICAL=F1SGL7-1" }, "locus": { "chromosome": "7", "start_pos": 75210529, "end_pos": 75208878, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002249.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002249.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002197.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002197.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" }, { "name": "retinal rod cell development", "id": "GO:0046548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046548", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "leucine zipper domain binding", "id": "GO:0043522", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043522", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" }, { "name": "promoter-specific chromatin binding", "id": "GO:1990841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990841", "evidence": [ { "database": "UniProtKB", "id": "F1SGL7", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGL7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 237, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGL7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGL7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGL7" }, { "id": "PS50217", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50217" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BZIP", "eco_id": "ECO_0000259", "start_pos": 159, "end_pos": 222, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGP8-1", "uniprot_ac": "F1SGP8", "uniprot_id": "F1SGP8_PIG", "mass": { "chemical_mass": 46602.0, "monoisotopic_mass": 46602.0 }, "refseq": { "ac": "XP_003353965", "name": "reticulocalbin-1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353965" }, "gene_names": [ { "name": "RCN1", "type": "recommended", "evidence": [ { "id": "F1SGP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGP8" } ] }, { "name": "RCN1", "type": "synonym", "evidence": [ { "id": "XP_003353965", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353965" } ] } ], "protein_names": [ { "name": "Reticulocalbin-1", "type": "recommended", "evidence": [ { "id": "F1SGP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGP8/entry#names_and_taxonomy" } ] }, { "name": "reticulocalbin-1", "type": "synonym", "evidence": [ { "id": "XP_003353965", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353965" } ] } ], "function": [ { "annotation": "May regulate calcium-dependent activities in the endoplasmic reticulum lumen or post-ER compartment.", "evidence": [ { "database": "UniProtKB", "id": "F1SGP8", "url": "https://www.uniprot.org/uniprotkb/F1SGP8#function" }, { "database": "UniProtKB", "id": "ARBA00058209", "url": "https://www.uniprot.org/uniprotkb/ARBA00058209#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGP8", "url": "https://www.uniprot.org/uniprotkb/F1SGP8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RCN1", "url": "https://www.uniprot.org/uniprotkb/F1SGP8", "locus": { "chromosome": "2", "start_pos": 28696661, "end_pos": 28709672, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013318", "url": "https://www.ensembl.org/id/ENSSSCG00000013318" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013318", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013318", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16229", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16229", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516484", "url": "https://www.ncbi.nlm.nih.gov/gene/100516484", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027241", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027241", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516484", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516484", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TELKRWI", "url": "https://omabrowser.org/oma/group/TELKRWI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGP8", "url": "https://www.orthodb.org/?gene=F1SGP8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10827", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10827", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10827:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10827:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13202", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13202", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003353965", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353965", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGP8", "url": "https://www.uniprot.org/uniprotkb/F1SGP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SGP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARERGRPELPCPPPGARPSALARGGRWLRGRPVPSLPAPAPAPPLPRALRSPIPELPPSSLARCFPAGRALLPTMACGGRGRRLGLALGLLLALVLAPPTLRAKPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARHLVYESDKNKDEKLTKEEILDNWNMFVGSQATNYGEDLTKNHDEL", "length": 406, "header": "tr|F1SGP8-1|F1SGP8_PIG Isoform 1 of Reticulocalbin-1 OS=Sus scrofa OX=9823 GN=RCN1 PE=1 SV=3 CANONICAL=F1SGP8-1" }, "isoforms": [ { "isoform_ac": "F1SGP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SGP8/entry#F1SGP8-1", "sequence": { "sequence": "MARERGRPELPCPPPGARPSALARGGRWLRGRPVPSLPAPAPAPPLPRALRSPIPELPPSSLARCFPAGRALLPTMACGGRGRRLGLALGLLLALVLAPPTLRAKPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTSEESKERLGKIVDRIDSDGDGFVTAEELKTWIKRVQKRYIYDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPTEFHDTSDHQTFKKMLPRDERRFKAADLDGDQTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQDEYIADMFSHEEGGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARHLVYESDKNKDEKLTKEEILDNWNMFVGSQATNYGEDLTKNHDEL", "length": 406, "header": "tr|F1SGP8-1|F1SGP8_PIG Isoform 1 of Reticulocalbin-1 OS=Sus scrofa OX=9823 GN=RCN1 PE=1 SV=3 CANONICAL=F1SGP8-1" }, "locus": { "chromosome": "2", "start_pos": 28709587, "end_pos": 28697726, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014544.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014544.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014150.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014150.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGP8", "url": "https://www.uniprot.org/uniprotkb/F1SGP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516484", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516484", "resource": "KEGG Pathway" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [ { "uniprot_canonical_ac": "Q15293-1", "protein_name": "Reticulocalbin-1", "gene_name": "RCN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARGGRGRRLGLALGLLLALVLAPRVLRAKPTVRKERVVRPDSELGERPPEDNQSFQYDHEAFLGKEDSKTFDQLTPDESKERLGKIVDRIDNDGDGFVTTEELKTWIKRVQKRYIFDNVAKVWKDYDRDKDDKISWEEYKQATYGYYLGNPAEFHDSSDHHTFKKMLPRDERRFKAADLNGDLTATREEFTAFLHPEEFEHMKEIVVLETLEDIDKNGDGFVDQDEYIADMFSHEENGPEPDWVLSEREQFNEFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARHLVYESDKNKDEKLTKEEILENWNMFVGSQATNYGEDLTKNHDEL", "length": 331 }, "evidence": [ { "id": "F1SGP8", "url": "https://omabrowser.org/oma/group/F1SGP8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SGP8", "url": "https://www.uniprot.org/uniprotkb/F1SGP8" } ], "pmid": "" }, { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "F1SGP8", "url": "https://www.uniprot.org/uniprotkb/F1SGP8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SGP8", "url": "https://www.uniprot.org/uniprotkb/F1SGP8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGP8" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 154, "end_pos": 189, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGQ1-1", "uniprot_ac": "F1SGQ1", "uniprot_id": "F1SGQ1_PIG", "mass": { "chemical_mass": 69464.0, "monoisotopic_mass": 69464.0 }, "refseq": { "ac": "XP_001927753", "name": "nucleolar protein 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927753" }, "gene_names": [ { "name": "NOP9", "type": "recommended", "evidence": [ { "id": "F1SGQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ] }, { "name": "NOP9", "type": "synonym", "evidence": [ { "id": "XP_001927753", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927753" } ] } ], "protein_names": [ { "name": "NOP9 nucleolar protein", "type": "synonym", "evidence": [ { "id": "F1SGQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1/entry#names_and_taxonomy" } ] }, { "name": "nucleolar protein 9", "type": "synonym", "evidence": [ { "id": "XP_001927753", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927753" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NOP9", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1", "locus": { "chromosome": "7", "start_pos": 74985753, "end_pos": 74992946, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001990", "url": "https://www.ensembl.org/id/ENSSSCG00000001990" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001990", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001990", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154880", "url": "https://www.ncbi.nlm.nih.gov/gene/100154880", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154880", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154880", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HHLVRNF", "url": "https://omabrowser.org/oma/group/HHLVRNF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGQ1", "url": "https://www.orthodb.org/?gene=F1SGQ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13102", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13102", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13102:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13102:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22493", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22493", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927753", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927753", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGQ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLGPRSCHPAGRGFPAGGKRGRGAKGSGRPASSRQQPCPPPEGRSEPATDAHPHLSSEALGYFRRALSALKEAPEAGEERELMVHNVLKEVEAQALALATNRTGSEMLQELLGFSPLKPLCRVWAVLRPNLRFVACHRCGVHVLQSALLQLPRLLGSPAEEEEEEEEEENGKDDSLETVEELVLGLAAEVCDDFLFYCGDTHGSFVVRTLLQVLGGTLLDSERARHRGSQSPEAQRAPSRECKPTDFEVPETFLNCLQDLSSCFVKDIAVFITDKISSFCLQMALQILHRKLPQFCAHLCSAVIGYLSSRNSSADGSPLLLFLRDQTSSRLLEQVLLVSEPARLQSLFEDHFQGHLQTLAAHPIANFPLQRFLDAITTTELLSPVFEELSPALEAVLAQGHPGVVIALVGACRRVGTHQAQVLQLLLEAFHCAEPASRQVACVPLFAALMAYEVYYGLVEEEGAVPAEHQVEMATARDLGEVTVIGSLLLQHLLHFSSPSLVLRSLGALTGPQLLTLAQSPAGSHVLDAVLASPAVTRKQRRRVLKTLKGQYVALACSRHGSRVLDAIWNGAALGARKEIAAELGERNQELIRDPFGHHVARNVALTTFLKRREAWEQQQGAVAKRRRALSSILED", "length": 637, "header": "tr|F1SGQ1-1|F1SGQ1_PIG Isoform 1 of NOP9 nucleolar protein OS=Sus scrofa OX=9823 GN=NOP9 PE=4 SV=1 CANONICAL=F1SGQ1-1" }, "isoforms": [ { "isoform_ac": "F1SGQ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1/entry#F1SGQ1-1", "sequence": { "sequence": "MGLGPRSCHPAGRGFPAGGKRGRGAKGSGRPASSRQQPCPPPEGRSEPATDAHPHLSSEALGYFRRALSALKEAPEAGEERELMVHNVLKEVEAQALALATNRTGSEMLQELLGFSPLKPLCRVWAVLRPNLRFVACHRCGVHVLQSALLQLPRLLGSPAEEEEEEEEEENGKDDSLETVEELVLGLAAEVCDDFLFYCGDTHGSFVVRTLLQVLGGTLLDSERARHRGSQSPEAQRAPSRECKPTDFEVPETFLNCLQDLSSCFVKDIAVFITDKISSFCLQMALQILHRKLPQFCAHLCSAVIGYLSSRNSSADGSPLLLFLRDQTSSRLLEQVLLVSEPARLQSLFEDHFQGHLQTLAAHPIANFPLQRFLDAITTTELLSPVFEELSPALEAVLAQGHPGVVIALVGACRRVGTHQAQVLQLLLEAFHCAEPASRQVACVPLFAALMAYEVYYGLVEEEGAVPAEHQVEMATARDLGEVTVIGSLLLQHLLHFSSPSLVLRSLGALTGPQLLTLAQSPAGSHVLDAVLASPAVTRKQRRRVLKTLKGQYVALACSRHGSRVLDAIWNGAALGARKEIAAELGERNQELIRDPFGHHVARNVALTTFLKRREAWEQQQGAVAKRRRALSSILED", "length": 637, "header": "tr|F1SGQ1-1|F1SGQ1_PIG Isoform 1 of NOP9 nucleolar protein OS=Sus scrofa OX=9823 GN=NOP9 PE=4 SV=1 CANONICAL=F1SGQ1-1" }, "locus": { "chromosome": "7", "start_pos": 74991990, "end_pos": 74985874, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002228.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002228.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002176.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002176.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154880", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154880", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZKI9-1", "protein_name": "NOP9 nucleolar protein", "gene_name": "Nop9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLGPRSAHKARRQFSGAGRRGRAARGSGRPPPGRDGCPQLPAAARAEQAPEALPHLSPEALGYFRRALSALKVAPDAAEERELMARNILKEVEAQALALATNRTGSEMLQELLGFSPLKPLCRVWIALRPNLRFVACHRCGVHVLQSALLQLPRLLRSPAEADEEEEGEDGPSQTLEELVLGLAAEVCDDFLFFCGDTHGSFVVRTLLQVLGGTLLESERVKPRGSQSSETQRTSARECKPTDFEVPKTFLNRLQDLSACFLKDIAVFITDKISSFCLQVALQVLHHKLPQHCAHLCDAVIDYLSSRNSSAGGSPLLLFLRDQTSSRLLEQVLLVLEPERLQRLFKNHFQGQLYSLAEHPIANFPLQRLLDAVTSPELLSLVFEELSPALEAVLARGHPGVVVALVEACRRVGAHQAQVLQLLFEAFHCAEPPSRQVACVPLFASLLAYEVYYELMEEEGAVPAEHQVEMASARPLREVTVLGSLLLQHLLYFSNPGLVLRSLSALTGPQLLTLAQSPAGSHVFDAILTSPSVTHKQRRRVLKTLKGQYVALACSRHGSRVFDAIWSGAALGARKEIAAELGEQNQELIQDPFGHHVARNVALTTFLKRRQAWEQQQNSVAKRRRALNSILGD", "length": 634 }, "evidence": [ { "id": "F1SGQ1", "url": "https://omabrowser.org/oma/group/F1SGQ1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7EZJ0-1", "protein_name": "Nucleolar protein 9 isoform X1", "gene_name": "nop9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLEKMQAAGGQRSSKNDQRARKRPQQASSGAGQLKRERLDGTTVGYFRRVTERLNEGFTDPEEKALFVENVLSEVKGKARLVALDMTGSVALERLLSLADAGQVAEMMSELGGEAGSEFRGVSCDQCGGHVMESALRQAHRWTEETPAEENPEEEHCGMLETQVQSLSRAVREKITEFCTDPYGSHVLRTLIHVLSGCRSVETTAPHAKKDRKSKSELMDFEIPTSFWWELKHLADCLMVNIKVCVSNQCAGVALQTLLTVCHRKRPILCRKLNKSIMGYLTSLSSAPGVSPLLVFLKDPSSSHLLQSVFSCSHDALLRNFYKKHLKTHMMTLALHPIANYTVQSLIAAAAGAGSRVLPKILDELLEGFEAVLAAGHMGVVVQMVESCVHCVEKQSEMMQRLLQAFHCSEPASLQLCCLPLFLSLLTHEVYYNTETAEGDTAAQPPQRPLSVSYHGSRLVQALCGFRDRSILMNSLHSLSSADLLSLGCDRSGSHALQALMTSGSDKGRAKILRKMQDMYVDLACSACGSRLLEAVWSSATVSQKQSIAEKLVPSESRLRSDQFARHIWAKFGLMNFLKRRSDWLEAQSGESRKRKMFSELLKD", "length": 604 }, "evidence": [ { "id": "F1SGQ1", "url": "https://omabrowser.org/oma/group/F1SGQ1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P47077-1", "protein_name": "Nucleolar protein 9", "gene_name": "NOP9", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGKTKTRGRRHQDKQRKDEFEPSSNSAKEHIQQEESTYNDEAEIKETQPQMFFGVLDREELEYFKQAESTLQLDAFEAPEEKFQFVTSIIEEAKGKELKLVTSQITSKLMERVILECDETQLKDIFQSFNGVFFGLSCHKYASHVLETLFVRSAALVERELLTPSFDNNEKEGPYVTMENMFLFMLNELKPHLKTMMNHQYASHVLRLLILILSSKTLPNSTKANSTLRSKKSKIARKMIDIKDNDDFNKVYQTPESFKSELRDIITTLYKGFTNGAESRSDISQSTITKFREYSVDKVASPVIQLIIQVEGIFDRDRSFWRLVFNTADEKDPKEESFLEYLLSDPVGSHFLENVIGSARLKYVERLYRLYMKDRIVKLAKRDTTGAFVVRALLEHLKEKDVKQILDAVVPELSMLLNSNMDFGTAIINASNKQGGYLRDDVIAQLIQKYYPEKSDAKNILESCLLLSASTLGNTRDDWPTAEERRRSVFLEQLIDYDDKFLNITIDSMLALPEERLIQMCYHGVFSHVVEHVLQTTRVDIIKRKMLLNILSKESVNLACNVYGSHIMDKLWEFTAKLTLYKERIARALVLETEKVKNSIYGRQVWKNWKLELYVRKMWDWKKLIKEQEFEIFPNSKPLQPKPEKHSRERNNSKEGSAFKKQKHYR", "length": 666 }, "evidence": [ { "id": "F1SGQ1", "url": "https://omabrowser.org/oma/group/F1SGQ1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q551Y5-1", "protein_name": "PUM-HD domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSYNKKSNYEGGYGGGYKKSWNNEGGDGGYGGGYKKSWNNEGGDGGNYKKSWNNQGGDGGNYKKSWNNEGGDDGNYKKSWNNNRDYNNDQSNGGGFYIDKVGSRNSGGSGRYNDRDNGGRDYNNGGGRYGDRNGDSRNGDSRYGDRNGSGGRGGGRGGGRGGRFNDRNGDRNSENNRRPNKQEDEEFVVEDATNPSAPQLDLDTRSYFTRIESLINKQEEAVDQEEIEIMIENAYKEIEGKESLVACDKKTSLVLESMFQKCKDPKVIVKFFESFGKEFEKLINDANGSRVIEGLLRSTPKIVNRSDKETLNKFNEILFNLCDLLLKDILKTVTDRYASYVFSSIILILSGTVKEKKLPNGGDQPGQGNGQGNGQGGGKKKPYKERMLELERQQEKPESNEYPVSKEFTDKLKEILEKIKDPIKSNMVKYSTQKEPIETIKSIFQVLSNAPIEIYRSWLEAFIKMSNEEFSKKQLIKAMKNQFGSVFCEIIVKTAPEVIFLELIQLCKHDLLDLSEDFYANHVVQQLIDHCHCEGHFLTLIQEFKDSFKQLFKMGRGLIVQKLIEQSLKWSAYEKEIIKHLNEALLPNYKTDQKEIAKYLLGLEGNVSHNQMYSACGAVILQLLFKFPNDYNKTTIESFLSLDIEYLLSLATNVIGSKVLDGFLDSQNVPLPKKNQLITKFNGNFVTIGEDRYGSYSIEKMYKIADFKQKDVIAVELMKEEERLFARPCGRYVLMICQINKYKKKKDSWANDVTSKDKKRKLFSDLLNDNENEKDTTTTATSTNNKKSNKKQEIEKVDQDEEQDQNTDDEKPKKKSKKSNDKHDEIDDIFNSKSSSKNKKK", "length": 841 }, "evidence": [ { "id": "F1SGQ1", "url": "https://omabrowser.org/oma/group/F1SGQ1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86U38-1", "protein_name": "Nucleolar protein 9", "gene_name": "NOP9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQGPRSPHKVGRRFPAGGKRGRGAKGSGRPLPGRKRQPWPPPDGRSEPAPDSHPHLSPEALGYFRRALSALKEAPETGEERDLMVHNIMKEVETQALALSTNRTGSEMLQELLGFSPLKPLCRVWAALRSNLRTVACHRCGVHVLQSALLQLPRLLGSAAEEEEEEEEDGKDGPTETLEELVLGLAAEVCDDFLVYCGDTHGSFVVRTLLQVLGGTILESERARPRGSQSSEAQKTPAQECKPADFEVPETFLNRLQDLSSSFLKDIAVFITDKISSFCLQVALQVLHRKLPQFCAHLCNAVIGYLSTRGSSVDGSPLLLFLRDQTSSRLLEQVLLVLEPPRLQSLFEEHLQGQLQTLAAHPIANFPLQRLLDAVTTPELLSPVFEELSPVLEAVLAQGHPGVVIALVGACRRVGAYQAKVLQLLLEAFHCAEPSSRQVACVPLFATLMAYEVYYGLTEEEGAVPAEHQVAMAAARALGDVTVLGSLLLQHLLHFSTPGLVLRSLGALTGPQLLSLAQSPAGSHVLDAILTSPSVTRKLRRRVLQNLKGQYVALACSRHGSRVLDAIWSGAALRARKEIAAELGEQNQELIRDPFGHHVARNVALTTFLKRREAWEQQQGAVAKRRRALNSILED", "length": 636 }, "evidence": [ { "id": "F1SGQ1", "url": "https://omabrowser.org/oma/group/F1SGQ1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BMC4-1", "protein_name": "Nucleolar protein 9", "gene_name": "Nop9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLGPRSAHKARRQFSGAGRRGRAARGSGRPPPGRDGYPRLPAAARAEQAPEALPHLSPEALGYFRRALSALKVAPDAAEERELMARNILKEVEAQALALATNRTGSEMLQELLGFSPLKPLCRVWAALRPNLRFVACHRCGVHVLQSALLQLPRLLRRPAEAEEEEEEEEEGGPSQTLEELVLGLAAEVCDDFLFFCGDTHGSFVVRTLLQVLGGTLLESERGKPRGSQSSETQRTSARECKPTDFEVPKTFLNRLQDLSACFLKDIAVFITDKISSFCLQVALQVLHQKLPQHCAHLCDAVIDYLSSRNSSADGSPLLLFLRDQTSSRLLEQVLLVLEAERLQRLYKDHFQGQLCSLAEHPIANFPLQRLLDAITSPELLSLVFEELSPALEMVLAQGHPGVVVALVEACRRVGTHQAQVLQLLFEAFHCAEPPSRQAACVPLFAALLAYEVYYELMEEEGAVPAEHQVEMATARALREVTVLGSLLLQHLLYFSNPGLVLRSLSALTGPQLLTLAQSPAGSHVFDAILSSPSVTHKQRRRVLKTLKGQYVALACSRHGSRVLDAIWSGAALGARKEIAAELGEKNQELIQDPFGHHVARNVALTTFLKRREAWEQQQSTVAKRRRALSSILED", "length": 636 }, "evidence": [ { "id": "F1SGQ1", "url": "https://omabrowser.org/oma/group/F1SGQ1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "pmid": "" }, { "name": "preribosome, small subunit precursor", "id": "GO:0030688", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030688", "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "pmid": "" }, { "name": "90S preribosome", "id": "GO:0030686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030686", "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000447", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000447", "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "pmid": "" }, { "name": "endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000472", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000472", "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "pmid": "" }, { "name": "endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000480", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000480", "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "pmid": "" }, { "name": "ribosomal small subunit export from nucleus", "id": "GO:0000056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000056", "evidence": [ { "database": "UniProtKB", "id": "F1SGQ1", "url": "https://www.uniprot.org/uniprotkb/F1SGQ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 312, "end_pos": 314 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGR9-1", "uniprot_ac": "F1SGR9", "uniprot_id": "F1SGR9_PIG", "mass": { "chemical_mass": 25647.0, "monoisotopic_mass": 25647.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Peptidase S1 domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SGR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGR9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGR9", "url": "https://www.uniprot.org/uniprotkb/F1SGR9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SGR9", "locus": {} } ], "crossref": [ { "id": "F1SGR9", "url": "https://alphafold.ebi.ac.uk/entry/F1SGR9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001982", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001982", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SGR9", "url": "https://www.uniprot.org/uniprotkb/F1SGR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGR9-1", "url": "https://www.uniprot.org/uniprotkb/F1SGR9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "REAAPALGSLSEKMCRLPLPLLLFLLCSRAKAGEGIIGGPKSKPHSRPCMAHLETVTPQDKLPARGGFLIRRGFVRTAAHCAGRSVTVTLGAHTIKKKEDTWPKLEVVKQFPHPKHDTTVDHDSMVLRLKEKATLTLAMGMLPLPPQFSIVPPGRLCRGLEGKLRLVEPQACRHFTAFDYSLQLCVGNPQKAKPGDSGASSVLWGVSYGPSDAKPPAVFTRISHDGPWTAKVLKEN", "length": 236, "header": "tr|F1SGR9-1|F1SGR9_PIG Isoform 1 of Peptidase S1 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1SGR9-1" }, "isoforms": [ { "isoform_ac": "F1SGR9-1", "url": "https://www.uniprot.org/uniprotkb/F1SGR9/entry#F1SGR9-1", "sequence": { "sequence": "REAAPALGSLSEKMCRLPLPLLLFLLCSRAKAGEGIIGGPKSKPHSRPCMAHLETVTPQDKLPARGGFLIRRGFVRTAAHCAGRSVTVTLGAHTIKKKEDTWPKLEVVKQFPHPKHDTTVDHDSMVLRLKEKATLTLAMGMLPLPPQFSIVPPGRLCRGLEGKLRLVEPQACRHFTAFDYSLQLCVGNPQKAKPGDSGASSVLWGVSYGPSDAKPPAVFTRISHDGPWTAKVLKEN", "length": 236, "header": "tr|F1SGR9-1|F1SGR9_PIG Isoform 1 of Peptidase S1 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1SGR9-1" }, "locus": { "chromosome": "7", "start_pos": 74830014, "end_pos": 74826875, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002218.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002218.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002166.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002166.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGR9", "url": "https://www.uniprot.org/uniprotkb/F1SGR9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1SGR9", "url": "https://www.uniprot.org/uniprotkb/F1SGR9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SGR9", "url": "https://www.uniprot.org/uniprotkb/F1SGR9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SGR9", "url": "https://www.uniprot.org/uniprotkb/F1SGR9" } ], "pmid": "" }, { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "F1SGR9", "url": "https://www.uniprot.org/uniprotkb/F1SGR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGR9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 236, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGR9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGR9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGR9" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 234, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGS5-1", "uniprot_ac": "F1SGS5", "uniprot_id": "F1SGS5_PIG", "mass": { "chemical_mass": 24775.0, "monoisotopic_mass": 24775.0 }, "refseq": { "ac": "XP_005661082", "name": "rhombotin-2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661082" }, "gene_names": [ { "name": "LMO2", "type": "recommended", "evidence": [ { "id": "F1SGS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ] }, { "name": "LMO2", "type": "synonym", "evidence": [ { "id": "XP_005661082", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661082" } ] } ], "protein_names": [ { "name": "Rhombotin-2", "type": "recommended", "evidence": [ { "id": "F1SGS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGS5/entry#names_and_taxonomy" } ] }, { "name": "LIM domain only protein 2", "type": "synonym", "evidence": [ { "id": "F1SGS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGS5/entry#names_and_taxonomy" } ] }, { "name": "rhombotin-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005661082", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661082" } ] } ], "function": [ { "annotation": "Acts with TAL1/SCL to regulate red blood cell development. Also acts with LDB1 to maintain erythroid precursors in an immature state.", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5#function" }, { "database": "UniProtKB", "id": "ARBA00053511", "url": "https://www.uniprot.org/uniprotkb/ARBA00053511#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LMO2", "url": "https://www.uniprot.org/uniprotkb/F1SGS5", "locus": { "chromosome": "2", "start_pos": 27055453, "end_pos": 27044763, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013307", "url": "https://www.ensembl.org/id/ENSSSCG00000013307" } ] } } ], "crossref": [ { "id": "F1SGS5", "url": "https://alphafold.ebi.ac.uk/entry/F1SGS5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013307", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013307", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09384", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09384", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09385", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09385", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512825", "url": "https://www.ncbi.nlm.nih.gov/gene/100512825", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050945", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050945", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512825", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512825", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MCGGCQQ", "url": "https://omabrowser.org/oma/group/MCGGCQQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGS5", "url": "https://www.orthodb.org/?gene=F1SGS5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45787", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45787", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45787:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45787:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8939236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005661082", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661082", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGS5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGS5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGSAVTVLERGGASSPPERRSKRRRRSGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI", "length": 223, "header": "tr|F1SGS5-1|F1SGS5_PIG Isoform 1 of Rhombotin-2 OS=Sus scrofa OX=9823 GN=LMO2 PE=4 SV=3 CANONICAL=F1SGS5-1" }, "isoforms": [ { "isoform_ac": "F1SGS5-1", "url": "https://www.uniprot.org/uniprotkb/F1SGS5/entry#F1SGS5-1", "sequence": { "sequence": "MEGSAVTVLERGGASSPPERRSKRRRRSGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI", "length": 223, "header": "tr|F1SGS5-1|F1SGS5_PIG Isoform 1 of Rhombotin-2 OS=Sus scrofa OX=9823 GN=LMO2 PE=4 SV=3 CANONICAL=F1SGS5-1" }, "locus": { "chromosome": "2", "start_pos": 27054645, "end_pos": 27044962, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014533.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014533.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014139.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014139.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 60, "start_aa": "Thr", "end_pos": 60, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr60", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512825", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512825", "resource": "KEGG Pathway" }, { "id": "R-SSC-8939236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "resource": "Reactome", "description": "RUNX1 regulates transcription of genes involved in differentiation of HSCs" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0M849-1", "protein_name": "Rhombotin-2", "gene_name": "Lmo2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VIRSLSLAFEGSAVTVLERGGASSPAERPSKRRRRSGGARAPEGVRVQAASQPRATKGAPPPPGTPPPSPMSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGII", "length": 228 }, "evidence": [ { "id": "F1SGS5", "url": "https://omabrowser.org/oma/group/F1SGS5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P25791-1", "protein_name": "Rhombotin-2", "gene_name": "LMO2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI", "length": 158 }, "evidence": [ { "id": "F1SGS5", "url": "https://omabrowser.org/oma/group/F1SGS5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P25801-1", "protein_name": "Rhombotin-2", "gene_name": "Lmo2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGII", "length": 158 }, "evidence": [ { "id": "F1SGS5", "url": "https://omabrowser.org/oma/group/F1SGS5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q1LZ94-1", "protein_name": "Rhombotin-2", "gene_name": "LMO2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSAIERKSLDPSEEPVDEVLQMPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI", "length": 158 }, "evidence": [ { "id": "F1SGS5", "url": "https://omabrowser.org/oma/group/F1SGS5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9PTJ3-1", "protein_name": "Rhombotin-2", "gene_name": "lmo2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASTIERKTLEANEEPVDEVLQMPPSLLTCGGCQQSIGDRFFLKAIEQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCEKRIRAFEMTMRVRDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIFEWTKLNGSIV", "length": 159 }, "evidence": [ { "id": "F1SGS5", "url": "https://omabrowser.org/oma/group/F1SGS5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "embryonic hemopoiesis", "id": "GO:0035162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035162", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "pmid": "" }, { "name": "RNA polymerase II-specific DNA-binding transcription factor binding", "id": "GO:0061629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061629", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "pmid": "" }, { "name": "bHLH transcription factor binding", "id": "GO:0043425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043425", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "pmid": "" }, { "name": "transcription coregulator binding", "id": "GO:0001221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001221", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "F1SGS5", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGS5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 223, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGS5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGS5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGS5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGS5" }, { "id": "PS50023", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50023" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LIM zinc-binding", "eco_id": "ECO_0000259", "start_pos": 93, "end_pos": 155, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 60 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGU1-1", "uniprot_ac": "F1SGU1", "uniprot_id": "F1SGU1_PIG", "mass": { "chemical_mass": 33956.0, "monoisotopic_mass": 33956.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100517094", "type": "recommended", "evidence": [ { "id": "F1SGU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGU1" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SGU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGU1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SGU1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGU1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100517094", "url": "https://www.uniprot.org/uniprotkb/F1SGU1", "locus": {} } ], "crossref": [ { "id": "F1SGU1", "url": "https://alphafold.ebi.ac.uk/entry/F1SGU1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034094", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034094", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15229", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15229", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TDLHFCG", "url": "https://omabrowser.org/oma/group/TDLHFCG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SGU1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TTMNNFTFFTEFILLGLSDDPHSRALLFALFLGIYLLTLIGNLVMILVIRGDSHLHIPMYFFLGHLSFIDICFSSVTMPKMLQNFLSQKKSISVWGCITQSFFFLLNGCTEASLLSAMAYDRYAAVCHPLLYTMVMNRTLCNAMVSAAWVMGFLNSLVNNIFIHKLHFCGSNIISHFCCELPSLFPLSCTDPAANEFLLSGTSAFLGLLTLPLILFSYSRIIPAILNIHSSEGQGKAFSTCSSHLTVVLLFYGTALFRYISPASGSVLEQMVSIQYGVITSLLNPLIYSLKNQEVKAALQRMLRQ", "length": 305, "header": "tr|F1SGU1-1|F1SGU1_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100517094 PE=3 SV=3 CANONICAL=F1SGU1-1" }, "isoforms": [ { "isoform_ac": "F1SGU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1/entry#F1SGU1-1", "sequence": { "sequence": "TTMNNFTFFTEFILLGLSDDPHSRALLFALFLGIYLLTLIGNLVMILVIRGDSHLHIPMYFFLGHLSFIDICFSSVTMPKMLQNFLSQKKSISVWGCITQSFFFLLNGCTEASLLSAMAYDRYAAVCHPLLYTMVMNRTLCNAMVSAAWVMGFLNSLVNNIFIHKLHFCGSNIISHFCCELPSLFPLSCTDPAANEFLLSGTSAFLGLLTLPLILFSYSRIIPAILNIHSSEGQGKAFSTCSSHLTVVLLFYGTALFRYISPASGSVLEQMVSIQYGVITSLLNPLIYSLKNQEVKAALQRMLRQ", "length": 305, "header": "tr|F1SGU1-1|F1SGU1_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100517094 PE=3 SV=3 CANONICAL=F1SGU1-1" }, "locus": { "chromosome": "5", "start_pos": 78790238, "end_pos": 78789324, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000895.3", "url": "https://www.ensembl.org/id/ENSSSCT00000000895.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000875.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000875.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGU1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MY61-1", "protein_name": "Olfactory receptor", "gene_name": "OR8S26", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALGNHSTITEFILLGLSADPHVQALSFVFFLAIYLLTLLGNLTMMLVIRTDSHLHTPMYFFLSHLSFLDFCFSSATVPKMLEILLSQKKTVSVEACLAQVFFVFDLGGTEACLLSVMAYDRYAAICHPLLYGKKMSNQLCKGLVLGSWSLGFLDAFINILLAMDFDFCRDQFIPYYSCELPSLFPLSCSDVSTSFTILLCSSLLHGLGTCFLIILSYTLIVSTILNIRSSSYRSKAFSTCSSHLTAVLLFYCSAFLRHIVPTLGSPQELIFSVQYSVITPLMNPLIYSLKNNEVKAAMQRTFRKYLHC", "length": 309 }, "evidence": [ { "id": "F1SGU1", "url": "https://omabrowser.org/oma/group/F1SGU1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SGU1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SGU1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SGU1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SGU1", "url": "https://www.uniprot.org/uniprotkb/F1SGU1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGU1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 305, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGU1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGU1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGU1" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGU7-1", "uniprot_ac": "F1SGU7", "uniprot_id": "F1SGU7_PIG", "mass": { "chemical_mass": 35679.0, "monoisotopic_mass": 35679.0 }, "refseq": { "ac": "XP_020948282", "name": "olfactory receptor 8S1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948282" }, "gene_names": [ { "name": "LOC100516735", "type": "recommended", "evidence": [ { "id": "F1SGU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGU7" } ] }, { "name": "LOC100516735", "type": "synonym", "evidence": [ { "id": "XP_020948282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948282" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SGU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGU7/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 8S1-like", "type": "synonym", "evidence": [ { "id": "XP_020948282", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948282" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SGU7", "url": "https://www.uniprot.org/uniprotkb/F1SGU7#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGU7", "url": "https://www.uniprot.org/uniprotkb/F1SGU7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100516735", "url": "https://www.uniprot.org/uniprotkb/F1SGU7", "locus": {} } ], "crossref": [ { "id": "F1SGU7", "url": "https://alphafold.ebi.ac.uk/entry/F1SGU7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15229", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15229", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516735", "url": "https://www.ncbi.nlm.nih.gov/gene/100516735", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516735", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516735", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PNKMILF", "url": "https://omabrowser.org/oma/group/PNKMILF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGU7", "url": "https://www.orthodb.org/?gene=F1SGU7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948282", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948282", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGU7", "url": "https://www.uniprot.org/uniprotkb/F1SGU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGU7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGU7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNVSIITEFVFLGLSSDPHIQTMLFVLFLWIYLLTLMGNLMMILIIKADLQLHTPMYFFLGHLSFLDLSFSSVTVPKMIENFLSQKKSISVWGCLTQSFFFTLSGGTEACLLSAMAYDRYAAICHPLVYTIIINRPLCIVTVSIAWAVGFLISLMNSLFIHKLHFCGSNIIPHFSCELPPLFPLSCTDPTVNEILLAVSCAFLGVLTLPLILFSYSKIISVILNIHSSDGQGKAFSTCSSHLTVVLLFYGTALFRYIGPASGSVWEQVVSIQYGVITSLLNPLIYSLKNQEVKAALQRMLRQQVCHRVRKSCVILLRK", "length": 319, "header": "tr|F1SGU7-1|F1SGU7_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100516735 PE=3 SV=2 CANONICAL=F1SGU7-1" }, "isoforms": [ { "isoform_ac": "F1SGU7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGU7/entry#F1SGU7-1", "sequence": { "sequence": "MKNVSIITEFVFLGLSSDPHIQTMLFVLFLWIYLLTLMGNLMMILIIKADLQLHTPMYFFLGHLSFLDLSFSSVTVPKMIENFLSQKKSISVWGCLTQSFFFTLSGGTEACLLSAMAYDRYAAICHPLVYTIIINRPLCIVTVSIAWAVGFLISLMNSLFIHKLHFCGSNIIPHFSCELPPLFPLSCTDPTVNEILLAVSCAFLGVLTLPLILFSYSKIISVILNIHSSDGQGKAFSTCSSHLTVVLLFYGTALFRYIGPASGSVWEQVVSIQYGVITSLLNPLIYSLKNQEVKAALQRMLRQQVCHRVRKSCVILLRK", "length": 319, "header": "tr|F1SGU7-1|F1SGU7_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100516735 PE=3 SV=2 CANONICAL=F1SGU7-1" }, "locus": { "chromosome": "5", "start_pos": 78743286, "end_pos": 78742330, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000891.3", "url": "https://www.ensembl.org/id/ENSSSCT00000000891.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000872.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000872.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGU7", "url": "https://www.uniprot.org/uniprotkb/F1SGU7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516735", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516735", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MRF0-1", "protein_name": "Olfactory receptor", "gene_name": "OR5BJ2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKNLSTIDEFVLLGLSTDPDIQTMLFVLFLGIYLLTLMGNLMMILVIRADPHLHTPMYFFLGHLSFLDICHSSITIPKMLQNFLSQRKTISVWGCITQSFFFIFSGGTESCLLSAMAYDRYAAICHPLLYTMIMNGPLCTAMVSAAWVMGFLNSLVNNLCTQNLQFCGPNIISHFSCELPSLFPLSCSDTMPNTILLAGSTAFLGLVTLPPILFSYSKIILAILSISSSKGQGKAFSTCSSHLTVVLSFYGTALFRYISPSSGSVLEQVVSIQYGVITSLINPLIYSFKNQEVKAALQRILRQQICVSG", "length": 309 }, "evidence": [ { "id": "F1SGU7", "url": "https://omabrowser.org/oma/group/F1SGU7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SGU7", "url": "https://www.uniprot.org/uniprotkb/F1SGU7" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SGU7", "url": "https://www.uniprot.org/uniprotkb/F1SGU7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SGU7", "url": "https://www.uniprot.org/uniprotkb/F1SGU7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SGU7", "url": "https://www.uniprot.org/uniprotkb/F1SGU7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGU7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 319, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGU7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGU7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGU7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGU7" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 286, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGV3-1", "uniprot_ac": "F1SGV3", "uniprot_id": "F1SGV3_PIG", "mass": { "chemical_mass": 42569.0, "monoisotopic_mass": 42569.0 }, "refseq": { "ac": "XP_005670395", "name": "ATP-sensitive inward rectifier potassium channel 15", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670395" }, "gene_names": [ { "name": "KCNJ15", "type": "recommended", "evidence": [ { "id": "F1SGV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGV3" } ] }, { "name": "KCNJ15", "type": "synonym", "evidence": [ { "id": "XP_005670395", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670395" } ] } ], "protein_names": [ { "name": "ATP-sensitive inward rectifier potassium channel 15", "type": "synonym", "evidence": [ { "id": "XP_005670395", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670395" } ] }, { "name": "Potassium inwardly rectifying channel subfamily J member 15", "type": "synonym", "evidence": [ { "id": "F1SGV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGV3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGV3", "url": "https://www.uniprot.org/uniprotkb/F1SGV3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNJ15", "url": "https://www.uniprot.org/uniprotkb/F1SGV3", "locus": { "chromosome": "13", "start_pos": 201939789, "end_pos": 201894420, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012066", "url": "https://www.ensembl.org/id/ENSSSCG00000012066" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012066", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012066", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152071", "url": "https://www.ncbi.nlm.nih.gov/gene/100152071", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003270", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003270", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013518", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013518", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152071", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152071", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LPMHRST", "url": "https://omabrowser.org/oma/group/LPMHRST/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGV3", "url": "https://www.orthodb.org/?gene=F1SGV3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11767", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11767", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11767:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11767:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01007", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01007", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17655", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17655", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1296041", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296041", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-997272", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-997272", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005670395", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670395", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29463", "url": "https://www.rhea-db.org/rhea/29463", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SGV3", "url": "https://www.uniprot.org/uniprotkb/F1SGV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGV3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGV3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAVHVGMASAPLVKHAAGAGLRTRRPRVMSKSGHSNVRIDKVDGIFLLYLQDLWTTVIDMKWRYKLTLFAATFVMTWFLFGVIYYGIAFIHGDLEHGEDTSSPTPCIMKVDSLTGAFLFSLESQTTIGYGVRFITEECPHAIFLLVAQLVITTLIEIFITGTFLAKIARPKKRAETIKFSHCAVITKQNGKLCLVIQVANMRKSLLIQCQLSGKLLQTHVTKEGERILLNQATVKFHVDSSSESPFLILPMTFYHVLDETSPLRDLTPQNLKEKEFELVVLLNATVESTSAVCQSRTSYIPEEIYWGFEFVPVVSLSKTGKYVADFSQFEQIRKSPDCTFYCADSEKQKLEEKYRQEDQRERELRTLLLQQSNV", "length": 375, "header": "tr|F1SGV3-1|F1SGV3_PIG Isoform 1 of Potassium inwardly rectifying channel subfamily J member 15 OS=Sus scrofa OX=9823 GN=KCNJ15 PE=3 SV=3 CANONICAL=F1SGV3-1" }, "isoforms": [ { "isoform_ac": "F1SGV3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGV3/entry#F1SGV3-1", "sequence": { "sequence": "MDAVHVGMASAPLVKHAAGAGLRTRRPRVMSKSGHSNVRIDKVDGIFLLYLQDLWTTVIDMKWRYKLTLFAATFVMTWFLFGVIYYGIAFIHGDLEHGEDTSSPTPCIMKVDSLTGAFLFSLESQTTIGYGVRFITEECPHAIFLLVAQLVITTLIEIFITGTFLAKIARPKKRAETIKFSHCAVITKQNGKLCLVIQVANMRKSLLIQCQLSGKLLQTHVTKEGERILLNQATVKFHVDSSSESPFLILPMTFYHVLDETSPLRDLTPQNLKEKEFELVVLLNATVESTSAVCQSRTSYIPEEIYWGFEFVPVVSLSKTGKYVADFSQFEQIRKSPDCTFYCADSEKQKLEEKYRQEDQRERELRTLLLQQSNV", "length": 375, "header": "tr|F1SGV3-1|F1SGV3_PIG Isoform 1 of Potassium inwardly rectifying channel subfamily J member 15 OS=Sus scrofa OX=9823 GN=KCNJ15 PE=3 SV=3 CANONICAL=F1SGV3-1" }, "locus": { "chromosome": "13", "start_pos": 201936966, "end_pos": 201935842, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071956.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071956.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062567.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062567.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 105, "start_aa": "Thr", "end_pos": 105, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr105", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGV3", "url": "https://www.uniprot.org/uniprotkb/F1SGV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152071", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152071", "resource": "KEGG Pathway" }, { "id": "R-SSC-1296041", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296041", "resource": "Reactome", "description": "Activation of G protein gated Potassium channels" }, { "id": "R-SSC-997272", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-997272", "resource": "Reactome", "description": "Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M4T8-1", "protein_name": "ATP-sensitive inward rectifier potassium channel 15 isoform X1", "gene_name": "Kcnj15", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVARWVKGSEDQPLALQKIADLQSDPRSLKMDTIHIGMSSAPLVKHSNGVGLKAHRPRVMSKSGHSNVRIDKVDGIYLLYLQDLWTTVIDMKWRYKLTLFAATFVMTWFLFGVVYYAIAFIHGDLELGESNSNHTPCIMKVDSLTGAFLFSLESQTTIGYGVRSITEECPHAIFLLVAQLVITTLIEIFITGTFLAKIARPKKRAETIKFSHCAVISKQNGKLCLVIQVANMRKSLLIQCQLSGKLLQTHVTKEGERILLNQATVKFHVDSSSESPFLILPMTFYHVLDETSPLRDLTPQNLKEKEFELVVLLNATVESTSAVCQSRTSYIPEEIYWGFEFVPVVSLSKNGKYVADFSQFEQIRKSPDCTFYCADSEKQKLEEQYRQEDQRERELRSLLLQQSNV", "length": 405 }, "evidence": [ { "id": "F1SGV3", "url": "https://omabrowser.org/oma/group/F1SGV3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "B7YZX2-1", "protein_name": "Inwardly rectifying potassium channel 3, isoform D", "gene_name": "Irk3", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MQSDASPLGAAATDSLTMHRSTSMPVKPKPLEQKPLLRSSEKETVNASDYYPESPGFVRRRRSKAAGDHLETRSEQNPTFSFPYAHDWAGSTIELTPDLGSGPRTSSSDGLRRSLNRVMEKNGKENVVFRRIPEKSWRYMRDLVTTLMELEWKYMLTLFLGSYFLSWLLFAALCYVVAYSHGDFIFDPVSGKRMGEGVDPCIYGVHSWVAMIIYSVETQTTLGFGEKYASEECPETIFLFVMQMLSAALIEGCMVSVIYAKTARPARQLTKLKFSDKAVICYRDGRLCLLFRVCDPREQQSIESKIRVYIIVDKRTREGETIKSHVELKLEGNGEQIILWPDVVCHVIDETSPLSQFTTAKLFNAAQFELYVSIVGTSPATAQMTEAKTSYLPREIFWGQRFVNIIHYDAQNERYIVDYENFNRTISVDMPMTNPKNDHLKLEYRK", "length": 446 }, "evidence": [ { "id": "F1SGV3", "url": "https://omabrowser.org/oma/group/F1SGV3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O88932-1", "protein_name": "ATP-sensitive inward rectifier potassium channel 15", "gene_name": "Kcnj15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDAIHLGMSSAPLVKHTNGVGLKAHRPRVMSKSGHSNVRIDKVDGIYLLYLQDLWTTVIDMKWRYKLTLFAATFVMTWFLFGVVYYAIAFIHGDLQLGESNSNHTPCIMKVDSLTGAFLFSLESQTTIGYGVRSITEECPHAIFLLVAQLVITTLIEIFITGTFLAKIARPKKRAETIKFSHCAVISKQNGKLCLVIQVANMRKSLLIQCQLSGKLLQTHVTKEGERILLNQATVKFHVDSSSESPFLILPMTFYHVLDETSPLRDLTPQNLKEKEFELVVLLNATVESTSAVCQSRTSYIPEEIYWGFEFVPVVSLSKNGKYVADFSQFEQIRKSPDCTFYCADSEKQKLEEQYRQEDQRERELRSLLLQQSNV", "length": 375 }, "evidence": [ { "id": "F1SGV3", "url": "https://omabrowser.org/oma/group/F1SGV3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q91ZF1-1", "protein_name": "ATP-sensitive inward rectifier potassium channel 15", "gene_name": "Kcnj15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVARWVKGSEDAPLALQKIPDLQSGPRSLRMEAIHIGMSSAPLVKHSNGVGLKAHRPRVMSKSGHSNVRIDKVDGIYLLYLQDLWTTVIDMKWRYKLTLFAATFVMTWFLFGVVYYAIAFIHGDLELGESNSNHTPCIMKVDSLTGAFLFSLESQTTIGYGVRSITEECPHAIFLLVAQLVITTLIEIFITGTFLAKIARPKKRAETIKFSHCAVISKQNGKLCLVIQVANMRKSLLIQCQLSGKLLQTHVTKEGERILLNQATVKFHVDSSSESPFLILPMTFYHVLDETSPLRDLTPQNLKEKEFELVVLLNATVESTSAVCQSRTSYIPEEIYWGFEFVPVVSLSKNGKYVADFSQFEQIRKSPDCTFYCADSEKQKLEEQYRQEDQRERELRSLLLQQSNV", "length": 405 }, "evidence": [ { "id": "F1SGV3", "url": "https://omabrowser.org/oma/group/F1SGV3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99712-1", "protein_name": "ATP-sensitive inward rectifier potassium channel 15", "gene_name": "KCNJ15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDAIHIGMSSTPLVKHTAGAGLKANRPRVMSKSGHSNVRIDKVDGIYLLYLQDLWTTVIDMKWRYKLTLFAATFVMTWFLFGVIYYAIAFIHGDLEPGEPISNHTPCIMKVDSLTGAFLFSLESQTTIGYGVRSITEECPHAIFLLVAQLVITTLIEIFITGTFLAKIARPKKRAETIKFSHCAVITKQNGKLCLVIQVANMRKSLLIQCQLSGKLLQTHVTKEGERILLNQATVKFHVDSSSESPFLILPMTFYHVLDETSPLRDLTPQNLKEKEFELVVLLNATVESTSAVCQSRTSYIPEEIYWGFEFVPVVSLSKNGKYVADFSQFEQIRKSPDCTFYCADSEKQQLEEKYRQEDQRERELRTLLLQQSNV", "length": 375 }, "evidence": [ { "id": "F1SGV3", "url": "https://omabrowser.org/oma/group/F1SGV3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SGV3", "url": "https://www.uniprot.org/uniprotkb/F1SGV3" } ], "pmid": "" }, { "name": "monoatomic ion channel complex", "id": "GO:0034702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034702", "evidence": [ { "database": "UniProtKB", "id": "F1SGV3", "url": "https://www.uniprot.org/uniprotkb/F1SGV3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "potassium ion import across plasma membrane", "id": "GO:1990573", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990573", "evidence": [ { "database": "UniProtKB", "id": "F1SGV3", "url": "https://www.uniprot.org/uniprotkb/F1SGV3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "inward rectifier potassium channel activity", "id": "GO:0005242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005242", "evidence": [ { "database": "UniProtKB", "id": "F1SGV3", "url": "https://www.uniprot.org/uniprotkb/F1SGV3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29463", "name": "", "equation": "K(+)(in) = K(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29463", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29463" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGV3" }, { "id": "PF17655", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17655" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Inward rectifier potassium channel C-terminal", "eco_id": "ECO_0000259", "start_pos": 178, "end_pos": 348, "start_aa": "Ile", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGV3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGV3" }, { "id": "PF01007", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01007" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Potassium channel inwardly rectifying transmembrane", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 171, "start_aa": "Met", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 105 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 284, "end_pos": 286 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGW7-1", "uniprot_ac": "F1SGW7", "uniprot_id": "F1SGW7_PIG", "mass": { "chemical_mass": 58302.0, "monoisotopic_mass": 58302.0 }, "refseq": { "ac": "XP_005664218", "name": "amphoterin-induced protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664218" }, "gene_names": [ { "name": "AMIGO2", "type": "recommended", "evidence": [ { "id": "F1SGW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ] }, { "name": "AMIGO2", "type": "synonym", "evidence": [ { "id": "XP_005664218", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664218" } ] } ], "protein_names": [ { "name": "Amphoterin-induced protein 2", "type": "recommended", "evidence": [ { "id": "F1SGW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGW7/entry#names_and_taxonomy" } ] }, { "name": "AMIGO-2", "type": "synonym", "evidence": [ { "id": "F1SGW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGW7/entry#names_and_taxonomy" } ] }, { "name": "amphoterin-induced protein 2", "type": "synonym", "evidence": [ { "id": "XP_005664218", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664218" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AMIGO2", "url": "https://www.uniprot.org/uniprotkb/F1SGW7", "locus": { "chromosome": "5", "start_pos": 77642195, "end_pos": 77645753, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000810", "url": "https://www.ensembl.org/id/ENSSSCG00000000810" } ] } } ], "crossref": [ { "id": "F1SGW7", "url": "https://alphafold.ebi.ac.uk/entry/F1SGW7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000810", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000810", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152349", "url": "https://www.ncbi.nlm.nih.gov/gene/100152349", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152349", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152349", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DFVWVGP", "url": "https://omabrowser.org/oma/group/DFVWVGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGW7", "url": "https://www.orthodb.org/?gene=F1SGW7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24365", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24365", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24365:SF541", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24365:SF541", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013149", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005664218", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005664218", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLRLRALPTLPRVVRPGCRELLCLLVITVTVSRGTSGVCPTACICATDIVSCTNKNLSKVPGNLFRLIKRLDLSYNRIGLLDSEWLPVSFVKLNTLIIRHNNITSISTDSFSTTPNLKCLDLSSNKLKTVKSAVFQELKVLEVLLLYNNHISYLDPSAFGGLPHLQKLYLSGNFLMQFPMDLYLGRFKLAELMFLDVSYNRISSLPMHHINLVPGKQLRGIYLHGNPFVCDCSLYSLLIFWYRRHFSSVMDFKNDYTCRLWSDTRHFHQVLLLQDSFLNCSDSIVNGSFRALGFIHEAQVGERLIVHCDSKTGNSNTDFMWVGPDNRVLEPEKEMKNFHVFPNGSLVIESPRFEDAGVYSCIAMNRQRLLNETVDVTINVSNFTMNRSHAHEAFNTAFTTLAACVASIVLVLLYLYLTPCPCKCKPKRQKHMLNQSSVQASILAPGPDSDAPADERKASAGKRVVFLEPLKDTAAGQNGKVRLFPSETVIAEGILKSSRVKSDSDSVNSVFSDTPFVAST", "length": 521, "header": "tr|F1SGW7-1|F1SGW7_PIG Isoform 1 of Amphoterin-induced protein 2 OS=Sus scrofa OX=9823 GN=AMIGO2 PE=3 SV=3 CANONICAL=F1SGW7-1" }, "isoforms": [ { "isoform_ac": "F1SGW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SGW7/entry#F1SGW7-1", "sequence": { "sequence": "MSLRLRALPTLPRVVRPGCRELLCLLVITVTVSRGTSGVCPTACICATDIVSCTNKNLSKVPGNLFRLIKRLDLSYNRIGLLDSEWLPVSFVKLNTLIIRHNNITSISTDSFSTTPNLKCLDLSSNKLKTVKSAVFQELKVLEVLLLYNNHISYLDPSAFGGLPHLQKLYLSGNFLMQFPMDLYLGRFKLAELMFLDVSYNRISSLPMHHINLVPGKQLRGIYLHGNPFVCDCSLYSLLIFWYRRHFSSVMDFKNDYTCRLWSDTRHFHQVLLLQDSFLNCSDSIVNGSFRALGFIHEAQVGERLIVHCDSKTGNSNTDFMWVGPDNRVLEPEKEMKNFHVFPNGSLVIESPRFEDAGVYSCIAMNRQRLLNETVDVTINVSNFTMNRSHAHEAFNTAFTTLAACVASIVLVLLYLYLTPCPCKCKPKRQKHMLNQSSVQASILAPGPDSDAPADERKASAGKRVVFLEPLKDTAAGQNGKVRLFPSETVIAEGILKSSRVKSDSDSVNSVFSDTPFVAST", "length": 521, "header": "tr|F1SGW7-1|F1SGW7_PIG Isoform 1 of Amphoterin-induced protein 2 OS=Sus scrofa OX=9823 GN=AMIGO2 PE=3 SV=3 CANONICAL=F1SGW7-1" }, "locus": { "chromosome": "5", "start_pos": 77644592, "end_pos": 77643030, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000879.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000879.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000862.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000862.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 42, "start_aa": "Thr", "end_pos": 42, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr42", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152349", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152349", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013149", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013149", "resource": "Reactome", "description": "RAC1 GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YUJ7-1", "protein_name": "Amphoterin-induced protein 2", "gene_name": "AMIGO2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSLNCRTLPIQLGACKVNCRALVCLLVFAVSVSGSAPGMCPTTCICASDIISCTNKNLSRVPGNLYRSMKRLDLSYNRIGFLEPEWVPVLFEKLNTLIINHNSISSIITGSFSTTPNLKYLDLSSNSLKTLGSPVFQELGTLEVLLLYNNQITHIESSAFGGLYKLQKLYLSYNFLLHFPLDLFVGKHKLTELILLDISFNHIQSMPIQRLSSVPAKHLSGVYLHGNPFYCDCTLYSMLIFWYQRHFSSVVDFKSEYTCLLRSDPRGYNKQPLLHDNFLNCSESTINSSFQAFGFIHDAQVGDRLIVHCDSRISDAGTHFVWVSPENKLLEPDMETDKFRVFHNGSLEITDAQLEDSGLYSCTAINKRRLLNETIEVRINVSNFTVNRPHAHEAFNTAFTTLAACVASIVLVLLYLYLTPCPCQCKTKRKKRKLNQSSAHTSILNSTPPQELPADEKKASTGKRVVFLEPVHEPKHSQNGKVKLFPNDNVIAESILKTTRTKSDSDSVNSVFSDTPFMPST", "length": 521 }, "evidence": [ { "id": "F1SGW7", "url": "https://omabrowser.org/oma/group/F1SGW7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1N348-1", "protein_name": "Amphoterin-induced protein 2", "gene_name": "AMIGO2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLRLHALPTLPGVVRPGCKQLLCLLVITMTVSRGASGVCPTACICATDIVSCTNKNLSRVPGNLFRLIKRLDLSYNRIGLLDSEWIPVSLVKLNTLIIRHNNITSISTDSFSTTPNLKCLDLSSNKLKTVKSAVFQELKVLEVLLLYNNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPMDLYVGRFKLAELMFLDVSYNRISSLPMHHINLVPGKQLRGIFLHGNPFVCDCSLYSLLIFWYRRHFSSVMDFKNDYTCRLWSDTRHFHQVLLLQDSFLNCSDSIINSSFRALGFIHEAQVGERLMVHCDGKTGRANTDFMWVGPDNRVLEPDKEMENFHVFPNGSLVIESPRFEDAGVYSCVAMNRQRLLNETVDVTINVSNFTINKSHAHEAFNTAFTTLAACVASIVLVLLYLYLTPCPCKCKHKRRKNMLNQSNVHASILTSGPDSDAPTDERKAGAGKRVVFLEPLKDTAAGQNGKVRLFPSETVIAEGILKSTRVKSDSDSVNSVFSDTPFVAST", "length": 521 }, "evidence": [ { "id": "F1SGW7", "url": "https://omabrowser.org/oma/group/F1SGW7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7TNJ4-1", "protein_name": "Amphoterin-induced protein 2", "gene_name": "Amigo2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLRFHTLPTLPRAVKPGCRELLCLLVIAVMVSPSSSGLCPTACICATDIVSCTNKNLSKVPGNLFRLIKRLDLSYNRIGLLDADWIPVSFVKLSTLIVRHNNITSISTGSFSTTPNLKCLDLSSNRLKSVKSAMFQELKVLEVLLLYNNHISYLDPAAFGGLSHLQKLYLSGNFLTKFPMDLYVGRFKLADLTFLDVSYNQIASIPMHHINLVPGKQLRGIFLHGNPFVCDCSLYSLLTFWYRRHFNSVTDFKHDYTCRLWLDSRHSHQLLLLQDSFLNCSHSVINGSFHALGFIHEAQVGERAIVHCDGKTGNGNTDFIWVGPDNRLLEPDKDTGNFRVFYNGSLVIENPGFEDAGVYSCIAMNRQRLLNETVDIMINVSNFTINRSHHAHEAFNTAFTTLAACVVSIVLVLLYLYLTPCPCKCRDKRQKNALNQSNAHSSILSPGPTRDASAEDRKAGKRVVFLEPLKDPAVGQNGKVKLVPSKTVIAEGILKSSRAKSDSDSVNSVFSDTPFVAST", "length": 520 }, "evidence": [ { "id": "F1SGW7", "url": "https://omabrowser.org/oma/group/F1SGW7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80ZD9-1", "protein_name": "Amphoterin-induced protein 2", "gene_name": "Amigo2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLRFHTLPTLPRAVKPGCRELLCLLVIAVMVSPSASGMCPTACICATDIVSCTNKNLSKVPGNLFRLIKRLDLSYNRIGLLDADWIPVSFVKLSTLILRHNNITSISTGSFSTTPNLKCLDLSSNRLKSVKSATFQELKALEVLLLYNNHISYLDPAAFGGLSHLQKLYLSGNFLTQFPMDLYTGRFKLADLTFLDVSYNRIPSIPMHHINLVPGRQLRGIYLHGNPFVCDCSLYSLLIFWYRRHFSSVMDFKNDYTCRLWSDSRHSHQLQLLQESFLNCSYSVINGSFHALGFIHEAQVGERAIVHCDSKTGNGNTDFIWVGPDNRLLEPDKDMGNFRVFYNGSLVIENPGFEDAGVYSCIAMNRQRLLNETVDIMINVSNFTINRSHAHEAFNTAFTTLAACVASIVLVLLYLYLTPCPCKCKAKRQKNTLSQSSAHSSILSPGPTGDASADDRKAGKRVVFLEPLKDTAAGQNGKVKLFPSETVIAEGILKSTRAKSDSDSVNSVFSDTPFVAST", "length": 519 }, "evidence": [ { "id": "F1SGW7", "url": "https://omabrowser.org/oma/group/F1SGW7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86SJ2-1", "protein_name": "Amphoterin-induced protein 2", "gene_name": "AMIGO2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLRVHTLPTLLGAVVRPGCRELLCLLMITVTVGPGASGVCPTACICATDIVSCTNKNLSKVPGNLFRLIKRLDLSYNRIGLLDSEWIPVSFAKLNTLILRHNNITSISTGSFSTTPNLKCLDLSSNKLKTVKNAVFQELKVLEVLLLYNNHISYLDPSAFGGLSQLQKLYLSGNFLTQFPMDLYVGRFKLAELMFLDVSYNRIPSMPMHHINLVPGKQLRGIYLHGNPFVCDCSLYSLLVFWYRRHFSSVMDFKNDYTCRLWSDSRHSRQVLLLQDSFMNCSDSIINGSFRALGFIHEAQVGERLMVHCDSKTGNANTDFIWVGPDNRLLEPDKEMENFYVFHNGSLVIESPRFEDAGVYSCIAMNKQRLLNETVDVTINVSNFTVSRSHAHEAFNTAFTTLAACVASIVLVLLYLYLTPCPCKCKTKRQKNMLHQSNAHSSILSPGPASDASADERKAGAGKRVVFLEPLKDTAAGQNGKVRLFPSEAVIAEGILKSTRGKSDSDSVNSVFSDTPFVAST", "length": 522 }, "evidence": [ { "id": "F1SGW7", "url": "https://omabrowser.org/oma/group/F1SGW7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "pmid": "" }, { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "pmid": "" }, { "name": "positive regulation of synapse assembly", "id": "GO:0051965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051965", "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "pmid": "" }, { "name": "heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules", "id": "GO:0007157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007157", "evidence": [ { "database": "UniProtKB", "id": "F1SGW7", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 435, "end_pos": 437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGW7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 521, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGW7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGW7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGW7" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 302, "end_pos": 378, "start_aa": "Gly", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 42 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 280, "end_pos": 282 }, { "start_pos": 287, "end_pos": 289 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 372, "end_pos": 374 }, { "start_pos": 380, "end_pos": 382 }, { "start_pos": 383, "end_pos": 385 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 435, "end_pos": 437 }, { "start_pos": 57, "end_pos": 59 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGX1-1", "uniprot_ac": "F1SGX1", "uniprot_id": "F1SGX1_PIG", "mass": { "chemical_mass": 60686.0, "monoisotopic_mass": 60686.0 }, "refseq": {}, "gene_names": [ { "name": "CHAF1B", "type": "recommended", "evidence": [ { "id": "F1SGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ] } ], "protein_names": [ { "name": "Chromatin assembly factor 1 subunit B", "type": "recommended", "evidence": [ { "id": "F1SGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX1/entry#names_and_taxonomy" } ] }, { "name": "Chromatin assembly factor I p60 subunit", "type": "synonym", "evidence": [ { "id": "F1SGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Acts as a component of the histone chaperone complex chromatin assembly factor 1 (CAF-1), which assembles histone octamers onto DNA during replication and repair. CAF-1 performs the first step of the nucleosome assembly process, bringing newly synthesized histones H3 and H4 to replicating DNA; histones H2A/H2B can bind to this chromatin precursor subsequent to DNA replication to complete the histone octamer.", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1#function" }, { "database": "UniProtKB", "id": "ARBA00055488", "url": "https://www.uniprot.org/uniprotkb/ARBA00055488#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHAF1B", "url": "https://www.uniprot.org/uniprotkb/F1SGX1", "locus": { "chromosome": "13", "start_pos": 200072556, "end_pos": 200048149, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012056", "url": "https://www.ensembl.org/id/ENSSSCG00000012056" } ] } } ], "crossref": [ { "id": "F1SGX1", "url": "https://alphafold.ebi.ac.uk/entry/F1SGX1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012056", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012056", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001632", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001632", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045145", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045145", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15271:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15271:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15512", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15512", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24105", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24105", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGX1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTTVRIWKVEKGPDGKAIVEFLSNLARHTKAVNVVRFSPNGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWTVVKTLRGHLEDVYDICWAADGNVMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWDPLGQYVATLSCDRILRVYSTQKKRVAFNVSKMLSGVGAEGEARSYRMFHDDSMKSFFRRLSFTPDGSLLLTPAGCVESGENVTNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFALRPAVEAGVELVSLPYRLVFAVASEDSVLLYDTQQLFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPLKEKPVLSVRTPDTAKKTKSQTQSLPGPRLVEGTPTSRAQDPSSPSATPPPGKQSLAPAAAKDTPAATPAARGFWAAPSEEKTLQASSQNVKGHPPRRVTLNTLQAWSKSTPRRINLIPKTDSPPNSIPTPLASSPSTEEIQSEVPGDPQGSPLELKRPRLSEPKEGQGLDP", "length": 555, "header": "tr|F1SGX1-1|F1SGX1_PIG Isoform 1 of Chromatin assembly factor 1 subunit B OS=Sus scrofa OX=9823 GN=CHAF1B PE=3 SV=3 CANONICAL=F1SGX1-1" }, "isoforms": [ { "isoform_ac": "F1SGX1-1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1/entry#F1SGX1-1", "sequence": { "sequence": "MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTTVRIWKVEKGPDGKAIVEFLSNLARHTKAVNVVRFSPNGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWTVVKTLRGHLEDVYDICWAADGNVMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWDPLGQYVATLSCDRILRVYSTQKKRVAFNVSKMLSGVGAEGEARSYRMFHDDSMKSFFRRLSFTPDGSLLLTPAGCVESGENVTNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFALRPAVEAGVELVSLPYRLVFAVASEDSVLLYDTQQLFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPLKEKPVLSVRTPDTAKKTKSQTQSLPGPRLVEGTPTSRAQDPSSPSATPPPGKQSLAPAAAKDTPAATPAARGFWAAPSEEKTLQASSQNVKGHPPRRVTLNTLQAWSKSTPRRINLIPKTDSPPNSIPTPLASSPSTEEIQSEVPGDPQGSPLELKRPRLSEPKEGQGLDP", "length": 555, "header": "tr|F1SGX1-1|F1SGX1_PIG Isoform 1 of Chromatin assembly factor 1 subunit B OS=Sus scrofa OX=9823 GN=CHAF1B PE=3 SV=3 CANONICAL=F1SGX1-1" }, "locus": { "chromosome": "13", "start_pos": 200072553, "end_pos": 200048945, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013188.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013188.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012836.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012836.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 431, "start_aa": "Thr", "end_pos": 431, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr431", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 451, "start_aa": "Thr", "end_pos": 451, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr451", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "pmid": "" }, { "name": "CAF-1 complex", "id": "GO:0033186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033186", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "pmid": "" }, { "name": "DNA replication", "id": "GO:0006260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006260", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "pmid": "" }, { "name": "nucleosome assembly", "id": "GO:0006334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006334", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "pmid": "" }, { "name": "DNA replication-dependent chromatin assembly", "id": "GO:0006335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006335", "evidence": [ { "database": "UniProtKB", "id": "F1SGX1", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 118, "end_pos": 120, "annotation": "n_glycosylation_sequon" }, { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SGX1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 555, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SGX1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SGX1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" }, { "id": "PF24105", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CAF1B/HIR1 beta-propeller", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 380, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX1" }, { "id": "PF15512", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15512" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Chromatin assembly factor 1 subunit B C-terminal", "eco_id": "ECO_0000259", "start_pos": 409, "end_pos": 546, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 431, 451 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 118, "end_pos": 120 }, { "start_pos": 208, "end_pos": 210 }, { "start_pos": 261, "end_pos": 263 }, { "start_pos": 264, "end_pos": 266 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGX3-1", "uniprot_ac": "F1SGX3", "uniprot_id": "F1SGX3_PIG", "mass": { "chemical_mass": 243703.0, "monoisotopic_mass": 243703.0 }, "refseq": {}, "gene_names": [ { "name": "DOP1B", "type": "recommended", "evidence": [ { "id": "F1SGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ] } ], "protein_names": [ { "name": "DOP1 leucine zipper like protein B", "type": "synonym", "evidence": [ { "id": "F1SGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DOP1B", "url": "https://www.uniprot.org/uniprotkb/F1SGX3", "locus": { "chromosome": "13", "start_pos": 199982512, "end_pos": 199848044, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012054", "url": "https://www.ensembl.org/id/ENSSSCG00000012054" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012054", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012054", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056458", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056458", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056459", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056459", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14042", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14042", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14042:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14042:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24597", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24597", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24601", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24601", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26706", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26706", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPEEQELLNDYRYRSYSSVIEKALRNFESSSEWADLISSLGKLNKALQSNLRYSLLPRRLVISKRLAQCLHPALPSGVHLKALETYEIIFKIVGTKWLAKLFLYSCGLFPLLAHAAMSVRPVLLGLYEKYFLPLQKLLLPSLQAFIVGLLPGLEEGSEIYDRTDTLLLRLSLVVGKEVFYAALWGSVLASPAIRLPASLFVVGHISRGSPGKEQKYMLGTDYQLTVKSLCASLLDSNVLVQRNNLEIVLFFFPFYTCLDSEERAIPLLRSDIVHILSAATQTLLRRDMSLNRRLYAWLLGSDIKGNTIVPEPETTNSYEDQSLYFFEKYSKDLLVEGLAEILHQKFPDADTEERHHAYLRPFRILVSLLDKPEIGPQVVENLFLEVIRAFYSYCRDALGSDLKLSYTQSGNSLISTIKENRNASEIVKTVNLLITSLSTDFLWDYMMRCFEDCFRPAKQSYTASRSVGPPTTVSELCTLLVFLLDVIPLELYSEVQTQYLPQVLGCLVQPLAEGMEALSLAELTHALKTCFKVLSKVQMPPSYLDTEPTSGSSSPVRGDNTEIIVDTGMVPPGEEDASFPPLKSEDSGIGLSASSPELSEHLRVPRVSPEKDDVWKKGGSMQRTLLCIQELIANFAHKNIFGVQPLASGEEAKSEEHAGPRDEGRTRGVEASDLSRKNSWEAKPISVPQFKQMLSDLFTVRGSPFKMKSTESPSPLPSSPGRRTKEEWTVDQVVVDLGSSRESCREAFAAACHLLLDCATFPVYLSQEEERLCDTLFRLPGAGDPSFPSWLKSLMTICCCVTDCYLQNVAISTLLEVINHSQSLALVIEDKMKRYKSSGHNPFFGRLQMVTVPPIAPGVLKVVAEKTDFYQRVARVLWNQLNKETREHHITSVELFYRLHCLAPSANICEDIICHALLDPDKGTRLEALFRFSVIWHLTREIQGSRVTSHNRSFDRSLFVVLDSLACTDGAIGAAAQGWLVRALSLGDVARILEPVLLLLLQPKTQRTSIHCLKQENSADWHRWINRKQTSFKEAWGAPELQEGGSEDNAPLSQLTTVDREAIWAEVEKEPEKGPPDCMLAEEDLPCYADLLDQTAGGAADSSEHTESADTSSGPTDSENTSTFSSPSHDPQELSSGERCCVPISAVARAHPRQAAGLKSNAKLSLTRVDSDKTQASESLSSDEEADAELQALTAARLLKQERERRETIEALFKHILLYLQPYDSRRVLYAFSVLEAVLKTNPKEFVEAVSRTSMDTSSTAHLNLISNLLARHQEALSGQSFYGKLQTQAPNVCPHSLLIELLTYLCLSFLRSYYPCYLKVSHRDLLGNRDVQVKSVEVLIRLMTQLVSVAKSAEGRNVEFIHSLLQRCRVQEFVLLSLSASMYTSQKRYGLATAERGRVLREDGFFEERLINLGQDQIWSEHPLQIELLKLLQVLIVLEHHLGQVLEEAEHPPDLSLEWRRALNFQQAISAMQYVQPHPLTSQGLLVAAVVRGLQPAYGYGMHPAWVSLVTHSLPYFGKSLGWTVTPFLVQICKNLDELVRQYESESVKLSVSITSKRENVSPDYPLTLLEGLTTISHFCLLEQPNHNKKATAVSDPTNLKNAKNAILEELPRIVNTMALLWNVLRKEETQKRPVDLLGATKGSSSVYFKTTKTIRQKILDFLNPLTAHLGVQLTAAVAAVWSRKKVKRHSKTKIVPAASTSQLTLVDLICALSTLQTDTVLHLVKEVVKRPPQVRGDEKSPLVDVPVLQFCYAFIQRLPVTALQENFPSLLGVLKESVQLNLAPPGYFLLLSMLNDFVTRTPNLESKKDQRDLQAATAASAMVSSSAPSVYSVQALSLLAEVLASLLDMVYRSDEKEKAVPLISRLLYYVFPYLRNHSAYNTPSFRAGSQLLSSLSGYAYTKRAWKKEVLELFLDPAFFQMDTSCVHWKSIIDHLLTHEKAMFKDLMNMQSSSLKLFSSFEQKAMLLKRQAFAVFSGELDQYHLYLPLIQNGNKVNRMKVAVSDGNGPSGGELPQSELILYLSACKFLDTALSFPPDKMPLFQIYRWAFVPEVDTEGPACPSDLEENHQEYKPHIVRILELLKLKYGEISSSDEISMKSELPLLRQRSLSSIRQLMPFFTTLNCAFKSQSKLPADTRAPPLFEFPVEETPRVLKQLEECVEYDFLEHLEC", "length": 2173, "header": "tr|F1SGX3-1|F1SGX3_PIG Isoform 1 of DOP1 leucine zipper like protein B OS=Sus scrofa OX=9823 GN=DOP1B PE=3 SV=5 CANONICAL=F1SGX3-1" }, "isoforms": [ { "isoform_ac": "F1SGX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SGX3/entry#F1SGX3-1", "sequence": { "sequence": "MDPEEQELLNDYRYRSYSSVIEKALRNFESSSEWADLISSLGKLNKALQSNLRYSLLPRRLVISKRLAQCLHPALPSGVHLKALETYEIIFKIVGTKWLAKLFLYSCGLFPLLAHAAMSVRPVLLGLYEKYFLPLQKLLLPSLQAFIVGLLPGLEEGSEIYDRTDTLLLRLSLVVGKEVFYAALWGSVLASPAIRLPASLFVVGHISRGSPGKEQKYMLGTDYQLTVKSLCASLLDSNVLVQRNNLEIVLFFFPFYTCLDSEERAIPLLRSDIVHILSAATQTLLRRDMSLNRRLYAWLLGSDIKGNTIVPEPETTNSYEDQSLYFFEKYSKDLLVEGLAEILHQKFPDADTEERHHAYLRPFRILVSLLDKPEIGPQVVENLFLEVIRAFYSYCRDALGSDLKLSYTQSGNSLISTIKENRNASEIVKTVNLLITSLSTDFLWDYMMRCFEDCFRPAKQSYTASRSVGPPTTVSELCTLLVFLLDVIPLELYSEVQTQYLPQVLGCLVQPLAEGMEALSLAELTHALKTCFKVLSKVQMPPSYLDTEPTSGSSSPVRGDNTEIIVDTGMVPPGEEDASFPPLKSEDSGIGLSASSPELSEHLRVPRVSPEKDDVWKKGGSMQRTLLCIQELIANFAHKNIFGVQPLASGEEAKSEEHAGPRDEGRTRGVEASDLSRKNSWEAKPISVPQFKQMLSDLFTVRGSPFKMKSTESPSPLPSSPGRRTKEEWTVDQVVVDLGSSRESCREAFAAACHLLLDCATFPVYLSQEEERLCDTLFRLPGAGDPSFPSWLKSLMTICCCVTDCYLQNVAISTLLEVINHSQSLALVIEDKMKRYKSSGHNPFFGRLQMVTVPPIAPGVLKVVAEKTDFYQRVARVLWNQLNKETREHHITSVELFYRLHCLAPSANICEDIICHALLDPDKGTRLEALFRFSVIWHLTREIQGSRVTSHNRSFDRSLFVVLDSLACTDGAIGAAAQGWLVRALSLGDVARILEPVLLLLLQPKTQRTSIHCLKQENSADWHRWINRKQTSFKEAWGAPELQEGGSEDNAPLSQLTTVDREAIWAEVEKEPEKGPPDCMLAEEDLPCYADLLDQTAGGAADSSEHTESADTSSGPTDSENTSTFSSPSHDPQELSSGERCCVPISAVARAHPRQAAGLKSNAKLSLTRVDSDKTQASESLSSDEEADAELQALTAARLLKQERERRETIEALFKHILLYLQPYDSRRVLYAFSVLEAVLKTNPKEFVEAVSRTSMDTSSTAHLNLISNLLARHQEALSGQSFYGKLQTQAPNVCPHSLLIELLTYLCLSFLRSYYPCYLKVSHRDLLGNRDVQVKSVEVLIRLMTQLVSVAKSAEGRNVEFIHSLLQRCRVQEFVLLSLSASMYTSQKRYGLATAERGRVLREDGFFEERLINLGQDQIWSEHPLQIELLKLLQVLIVLEHHLGQVLEEAEHPPDLSLEWRRALNFQQAISAMQYVQPHPLTSQGLLVAAVVRGLQPAYGYGMHPAWVSLVTHSLPYFGKSLGWTVTPFLVQICKNLDELVRQYESESVKLSVSITSKRENVSPDYPLTLLEGLTTISHFCLLEQPNHNKKATAVSDPTNLKNAKNAILEELPRIVNTMALLWNVLRKEETQKRPVDLLGATKGSSSVYFKTTKTIRQKILDFLNPLTAHLGVQLTAAVAAVWSRKKVKRHSKTKIVPAASTSQLTLVDLICALSTLQTDTVLHLVKEVVKRPPQVRGDEKSPLVDVPVLQFCYAFIQRLPVTALQENFPSLLGVLKESVQLNLAPPGYFLLLSMLNDFVTRTPNLESKKDQRDLQAATAASAMVSSSAPSVYSVQALSLLAEVLASLLDMVYRSDEKEKAVPLISRLLYYVFPYLRNHSAYNTPSFRAGSQLLSSLSGYAYTKRAWKKEVLELFLDPAFFQMDTSCVHWKSIIDHLLTHEKAMFKDLMNMQSSSLKLFSSFEQKAMLLKRQAFAVFSGELDQYHLYLPLIQNGNKVNRMKVAVSDGNGPSGGELPQSELILYLSACKFLDTALSFPPDKMPLFQIYRWAFVPEVDTEGPACPSDLEENHQEYKPHIVRILELLKLKYGEISSSDEISMKSELPLLRQRSLSSIRQLMPFFTTLNCAFKSQSKLPADTRAPPLFEFPVEETPRVLKQLEECVEYDFLEHLEC", "length": 2173, "header": "tr|F1SGX3-1|F1SGX3_PIG Isoform 1 of DOP1 leucine zipper like protein B OS=Sus scrofa OX=9823 GN=DOP1B PE=3 SV=5 CANONICAL=F1SGX3-1" }, "locus": { "chromosome": "13", "start_pos": 199982233, "end_pos": 199855659, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013186.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013186.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012834.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012834.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1117, "start_aa": "Thr", "end_pos": 1117, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1117", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "pmid": "" }, { "name": "early endosome membrane", "id": "GO:0031901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031901", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "pmid": "" }, { "name": "cognition", "id": "GO:0050890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050890", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "pmid": "" }, { "name": "Golgi to endosome transport", "id": "GO:0006895", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006895", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "pmid": "" }, { "name": "embryonic pattern specification", "id": "GO:0009880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009880", "evidence": [ { "database": "UniProtKB", "id": "F1SGX3", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1121, "end_pos": 1123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1562, "end_pos": 1564, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1879, "end_pos": 1881, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 820, "end_pos": 822, "annotation": "n_glycosylation_sequon" }, { "start_pos": 952, "end_pos": 954, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" }, { "id": "PF04118", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DOP1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 303, "start_aa": "Tyr", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" }, { "id": "PF24598", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24598" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DOP1-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 1786, "end_pos": 1994, "start_aa": "Ala", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" }, { "id": "PF24601", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24601" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DOP1-like TPR", "eco_id": "ECO_0000259", "start_pos": 1212, "end_pos": 1585, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SGX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX3" }, { "id": "PF24597", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24597" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DOP1-like middle TPR", "eco_id": "ECO_0000259", "start_pos": 326, "end_pos": 517, "start_aa": "Phe", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1117 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1121, "end_pos": 1123 }, { "start_pos": 1562, "end_pos": 1564 }, { "start_pos": 1879, "end_pos": 1881 }, { "start_pos": 423, "end_pos": 425 }, { "start_pos": 820, "end_pos": 822 }, { "start_pos": 952, "end_pos": 954 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGX4-1", "uniprot_ac": "F1SGX4", "uniprot_id": "F1SGX4_PIG", "mass": { "chemical_mass": 30663.0, "monoisotopic_mass": 30663.0 }, "refseq": { "ac": "NP_001231661", "name": "carbonyl reductase [NADPH] 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231661" }, "gene_names": [ { "name": "CBR3", "type": "recommended", "evidence": [ { "id": "F1SGX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ] }, { "name": "CBR3", "type": "synonym", "evidence": [ { "id": "NP_001231661", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231661" } ] } ], "protein_names": [ { "name": "Carbonyl reductase (NADPH)", "type": "recommended", "evidence": [ { "id": "F1SGX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX4/entry#names_and_taxonomy" } ] }, { "name": "1.1.1.184", "type": "synonym", "evidence": [ { "id": "F1SGX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGX4/entry#names_and_taxonomy" } ] }, { "name": "carbonyl reductase [NADPH] 3", "type": "synonym", "evidence": [ { "id": "NP_001231661", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231661" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CBR3", "url": "https://www.uniprot.org/uniprotkb/F1SGX4", "locus": { "chromosome": "13", "start_pos": 199840442, "end_pos": 199830668, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012053", "url": "https://www.ensembl.org/id/ENSSSCG00000012053" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012053", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012053", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05324", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05324", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512990", "url": "https://www.ncbi.nlm.nih.gov/gene/100512990", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512990", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512990", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MAGDYGS", "url": "https://omabrowser.org/oma/group/MAGDYGS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGX4", "url": "https://www.orthodb.org/?gene=F1SGX4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43963", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43963", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43963:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43963:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-211945", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211945", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231661", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231661", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "11636", "url": "https://www.rhea-db.org/rhea/11636", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "15937", "url": "https://www.rhea-db.org/rhea/15937", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "19257", "url": "https://www.rhea-db.org/rhea/19257", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "20744", "url": "https://www.rhea-db.org/rhea/20744", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "24508", "url": "https://www.rhea-db.org/rhea/24508", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "63476", "url": "https://www.rhea-db.org/rhea/63476", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "63480", "url": "https://www.rhea-db.org/rhea/63480", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "63492", "url": "https://www.rhea-db.org/rhea/63492", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "63500", "url": "https://www.rhea-db.org/rhea/63500", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "63504", "url": "https://www.rhea-db.org/rhea/63504", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "70215", "url": "https://www.rhea-db.org/rhea/70215", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "70219", "url": "https://www.rhea-db.org/rhea/70219", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGX4-1", "url": "https://www.uniprot.org/uniprotkb/F1SGX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSYTRVALVTGANKGIGFAIARDLCRQFSGDVVLTSRDAARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKIDDPTPFDIQAEMTLKTNFFGTRNVCIELLPIIKPHGRVVNISSLLGSKALENCSEDLQEKFRCEALTEEDLVDLMKKFVEDAKNEVHEREGWPSSAYGVSKLGVTVLSRILAQRLDEKRKADRILLNACCPGWVKTDMTGGQGFETVEEGAVTPVYLALLPPDATEPQGQLVRDKVIQNW", "length": 277, "header": "tr|F1SGX4-1|F1SGX4_PIG Isoform 1 of Carbonyl reductase (NADPH) OS=Sus scrofa OX=9823 GN=CBR3 PE=1 SV=1 CANONICAL=F1SGX4-1" }, "isoforms": [ { "isoform_ac": "F1SGX4-1", "url": "https://www.uniprot.org/uniprotkb/F1SGX4/entry#F1SGX4-1", "sequence": { "sequence": "MSSYTRVALVTGANKGIGFAIARDLCRQFSGDVVLTSRDAARGRAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKIDDPTPFDIQAEMTLKTNFFGTRNVCIELLPIIKPHGRVVNISSLLGSKALENCSEDLQEKFRCEALTEEDLVDLMKKFVEDAKNEVHEREGWPSSAYGVSKLGVTVLSRILAQRLDEKRKADRILLNACCPGWVKTDMTGGQGFETVEEGAVTPVYLALLPPDATEPQGQLVRDKVIQNW", "length": 277, "header": "tr|F1SGX4-1|F1SGX4_PIG Isoform 1 of Carbonyl reductase (NADPH) OS=Sus scrofa OX=9823 GN=CBR3 PE=1 SV=1 CANONICAL=F1SGX4-1" }, "locus": { "chromosome": "13", "start_pos": 199840391, "end_pos": 199830838, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013185.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013185.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012833.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012833.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512990", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512990", "resource": "KEGG Pathway" }, { "id": "R-SSC-211945", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-211945", "resource": "Reactome", "description": "Phase I - Functionalization of compounds" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8K354-1", "protein_name": "Carbonyl reductase [NADPH] 3", "gene_name": "Cbr3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFHQLDIDDPQSIRALRDFLRKEYGGLNVLVNNAGIAFRMDDPTPFDIQAEVTLKTNFFATRNVCTELLPIMKPHGRVVNISSLQGLKALENCREDLQEKFRCDTLTEVDLVDLMKKFVEDTKNEVHEREGWPDSAYGVSKLGVTVLTRILARQLDEKRKADRILLNACCPGWVKTDMARDQGSRTVEEGAETPVYLALLPPDATEPHGQLVRDKVVQTW", "length": 277 }, "evidence": [ { "id": "F1SGX4", "url": "https://omabrowser.org/oma/group/F1SGX4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cognition", "id": "GO:0050890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050890", "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "15-hydroxyprostaglandin-D dehydrogenase (NADP+) activity", "id": "GO:0047020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047020", "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "pmid": "" }, { "name": "NADPH dehydrogenase (quinone) activity", "id": "GO:0008753", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008753", "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "pmid": "" }, { "name": "NADPH binding", "id": "GO:0070402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070402", "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "pmid": "" }, { "name": "carbonyl reductase (NADPH) activity", "id": "GO:0004090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004090", "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "pmid": "" }, { "name": "15-hydroxyprostaglandin dehydrogenase (NADP+) activity", "id": "GO:0047021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047021", "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "pmid": "" }, { "name": "prostaglandin E2 9-reductase activity", "id": "GO:0050221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050221", "evidence": [ { "database": "UniProtKB", "id": "F1SGX4", "url": "https://www.uniprot.org/uniprotkb/F1SGX4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "11636", "name": "", "equation": "prostaglandin E1 + NADP(+) = 15-oxoprostaglandin E1 + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11636", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11636" } ] }, { "id": "15937", "name": "", "equation": "a primary alcohol + NADP(+) = an aldehyde + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15937", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15937" } ] }, { "id": "19257", "name": "", "equation": "a secondary alcohol + NADP(+) = a ketone + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19257", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19257" } ] }, { "id": "20744", "name": "", "equation": "prostaglandin D2 + NADP(+) = 15-oxoprostaglandin D2 + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20744", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20744" } ] }, { "id": "24508", "name": "", "equation": "prostaglandin F2alpha + NADP(+) = prostaglandin E2 + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "24508", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/24508" } ] }, { "id": "63476", "name": "", "equation": "prostaglandin E2 + NADP(+) = 15-oxoprostaglandin E2 + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "63476", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/63476" } ] }, { "id": "63480", "name": "", "equation": "prostaglandin F2alpha + NADP(+) = 15-oxoprostaglandin F2alpha + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "63480", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/63480" } ] }, { "id": "63492", "name": "", "equation": "menadione + NADPH + H(+) = menadiol + NADP(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "63492", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/63492" } ] }, { "id": "63500", "name": "", "equation": "S-nitrosoglutathione + NADPH + H(+) = S-(hydroxysulfenamide)glutathione + NADP(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "63500", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/63500" } ] }, { "id": "63504", "name": "", "equation": "daunorubicin + NADPH + H(+) = 13-dihydrodaunorubicin + NADP(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "63504", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/63504" } ] }, { "id": "70215", "name": "", "equation": "cortisol + NADPH + H(+) = 20beta-dihydrocortisol + NADP(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70215", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70215" } ] }, { "id": "70219", "name": "", "equation": "corticosterone + NADPH + H(+) = 20beta-dihydrocorticosterone + NADP(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70219", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70219" } ] }, { "id": "R-SSC-8937419", "name": "CBR3 reduces DOX to DOXOL", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-9659674" ], "output_participant_list": [ "R-ALL-8937418" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8937419", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8937419" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-8937418", "participant_name": "DOXOL [cytosol]", "crossref": [ { "id": "ZINC000060183860", "database": "ZINC", "url": "" }, { "id": "83970", "database": "COMPOUND", "url": "" }, { "id": "133817", "database": "ChEBI", "url": "" }, { "id": "HMDB0041884", "database": "HMDB Metabolite", "url": "" }, { "id": "2677", "database": "Guide to Pharmacology - Ligands", "url": "" } ] }, { "participant_id": "R-ALL-9659674", "participant_name": "doxorubicin [cytosol]", "crossref": [ { "id": "7069", "database": "Guide to Pharmacology - Ligands", "url": "" }, { "id": "28748", "database": "ChEBI", "url": "" }, { "id": "FA7PVTGAWGXF", "database": "Pharos - Ligands", "url": "" }, { "id": "0004992", "database": "Mondo", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 137, "end_pos": 139 }, { "start_pos": 149, "end_pos": 151 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SGZ6-1", "uniprot_ac": "F1SGZ6", "uniprot_id": "F1SGZ6_PIG", "mass": { "chemical_mass": 27625.0, "monoisotopic_mass": 27625.0 }, "refseq": { "ac": "XP_005670384", "name": "oligodendrocyte transcription factor 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670384" }, "gene_names": [ { "name": "OLIG1", "type": "recommended", "evidence": [ { "id": "F1SGZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ] }, { "name": "OLIG1", "type": "synonym", "evidence": [ { "id": "XP_005670384", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670384" } ] } ], "protein_names": [ { "name": "Oligodendrocyte transcription factor 1", "type": "synonym", "evidence": [ { "id": "F1SGZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6/entry#names_and_taxonomy" } ] }, { "name": "oligodendrocyte transcription factor 1", "type": "synonym", "evidence": [ { "id": "XP_005670384", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670384" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OLIG1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6", "locus": { "chromosome": "13", "start_pos": 196646403, "end_pos": 196644059, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012040", "url": "https://www.ensembl.org/id/ENSSSCG00000012040" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012040", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012040", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18942", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18942", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620095", "url": "https://www.ncbi.nlm.nih.gov/gene/100620095", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620095", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620095", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CKFPHLF", "url": "https://omabrowser.org/oma/group/CKFPHLF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SGZ6", "url": "https://www.orthodb.org/?gene=F1SGZ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19290", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19290", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19290:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19290:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005670384", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670384", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SGZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYYAVSQARVNAAPATMLRPQRPGDVQLGTSLYELVGYRQPPSSSSSSSTSSSTTGPLLPKAAREKLEAPAEPPGTGSGPGAHTGGSSRADAKEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEGAGPAAPRLLLAGLPLLAAAPGSVLLAPGAVGPPDALRPAKYLSLALDEPPCGQFALPGGGPGGGAGSPGLCTCAVCKFPHLVPAGLGLAAVQAQFSK", "length": 269, "header": "tr|F1SGZ6-1|F1SGZ6_PIG Isoform 1 of Oligodendrocyte transcription factor 1 OS=Sus scrofa OX=9823 GN=OLIG1 PE=4 SV=3 CANONICAL=F1SGZ6-1" }, "isoforms": [ { "isoform_ac": "F1SGZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6/entry#F1SGZ6-1", "sequence": { "sequence": "MYYAVSQARVNAAPATMLRPQRPGDVQLGTSLYELVGYRQPPSSSSSSSTSSSTTGPLLPKAAREKLEAPAEPPGTGSGPGAHTGGSSRADAKEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEGAGPAAPRLLLAGLPLLAAAPGSVLLAPGAVGPPDALRPAKYLSLALDEPPCGQFALPGGGPGGGAGSPGLCTCAVCKFPHLVPAGLGLAAVQAQFSK", "length": 269, "header": "tr|F1SGZ6-1|F1SGZ6_PIG Isoform 1 of Oligodendrocyte transcription factor 1 OS=Sus scrofa OX=9823 GN=OLIG1 PE=4 SV=3 CANONICAL=F1SGZ6-1" }, "locus": { "chromosome": "13", "start_pos": 196645004, "end_pos": 196644198, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013172.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013172.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012821.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012821.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620095", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620095", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1N3Q1-1", "protein_name": "Oligodendrocyte transcription factor 1", "gene_name": "OLIG1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MYYAVSQARVNAAPASMLRPPRPGDVPVGASLYELVGYRQPPSSSSSSSPTGAALLPKAAREKPEAPADTPGTGPGTGAHAGGGPRADAKEEQQQQLRRKINSRERKRMHDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEGAGPAAPRLLLAGLPLLAAAPGSVLLAPGAVGPPDALRPAKYLSLALEEPPCGQFALPGGGPGGGAGGPGLCTCAVCKFPHLVPAGLGLAAVPAQFSK", "length": 266 }, "evidence": [ { "id": "F1SGZ6", "url": "https://omabrowser.org/oma/group/F1SGZ6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8TAK6-1", "protein_name": "Oligodendrocyte transcription factor 1", "gene_name": "OLIG1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYYAVSQARVNAVPGTMLRPQRPGDLQLGASLYELVGYRQPPSSSSSSTSSTSSTSSSSTTAPLLPKAAREKPEAPAEPPGPGPGSGAHPGGSARPDAKEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEGAGPAAPRLLLAGLPLLAAAPGSVLLAPGAVGPPDALRPAKYLSLALDEPPCGQFALPGGGAGGPGLCTCAVCKFPHLVPASLGLAAVQAQFSK", "length": 271 }, "evidence": [ { "id": "F1SGZ6", "url": "https://omabrowser.org/oma/group/F1SGZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JKN5-1", "protein_name": "Oligodendrocyte transcription factor 1", "gene_name": "Olig1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MYYAISQARVNAAPATMLRPQRPGDVQLGASLYELVGYRQPPISSSSSSSSSTASLLPKPAREKAEAPLAEPRGPAPESGGARADAKEEQQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGDGAGPAAPRLLLAGLPLLAAAPGSVLLAPGAVGPPETLRPTKYLSLALDEPPCGQFSLPAGGAGSPGLCSCAVCKFPHLVPAGLGLAAVQAQFSK", "length": 260 }, "evidence": [ { "id": "F1SGZ6", "url": "https://omabrowser.org/oma/group/F1SGZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9WUQ3-1", "protein_name": "Oligodendrocyte transcription factor 1", "gene_name": "Olig1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYYAVSQARVNAAPATMLRPQRPGDVQLGASLYELVGYRQPPISSSSSTSSSSTASLLPKPAREKPEAPLAEPRGPAPESGGARADAKEEQQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGDGAGPAAPRLLLAGLPLLAAAPGSVLLAPGAVGPPETLRPTKYLSLALDEPPCGQFALPAGGAGSPGLCSCAVCKFPHLVPAGLGLAAVQAQFSK", "length": 261 }, "evidence": [ { "id": "F1SGZ6", "url": "https://omabrowser.org/oma/group/F1SGZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "pmid": "" }, { "name": "oligodendrocyte development", "id": "GO:0014003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014003", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "pmid": "" }, { "name": "axon development", "id": "GO:0061564", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061564", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "pmid": "" }, { "name": "sensory organ development", "id": "GO:0007423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007423", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "pmid": "" }, { "name": "E-box binding", "id": "GO:0070888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070888", "evidence": [ { "database": "UniProtKB", "id": "F1SGZ6", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SGZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SGZ6" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 99, "end_pos": 158, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SH07-1", "uniprot_ac": "F1SH07", "uniprot_id": "F1SH07_PIG", "mass": { "chemical_mass": 104833.0, "monoisotopic_mass": 104833.0 }, "refseq": { "ac": "XP_003132801", "name": "PAX3- and PAX7-binding protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132801" }, "gene_names": [ { "name": "PAXBP1", "type": "recommended", "evidence": [ { "id": "F1SH07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH07" } ] }, { "name": "PAXBP1", "type": "synonym", "evidence": [ { "id": "XP_003132801", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132801" } ] } ], "protein_names": [ { "name": "PAX3 and PAX7 binding protein 1", "type": "synonym", "evidence": [ { "id": "F1SH07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH07/entry#names_and_taxonomy" } ] }, { "name": "PAX3- and PAX7-binding protein 1", "type": "synonym", "evidence": [ { "id": "XP_003132801", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132801" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SH07", "url": "https://www.uniprot.org/uniprotkb/F1SH07" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PAXBP1", "url": "https://www.uniprot.org/uniprotkb/F1SH07", "locus": { "chromosome": "13", "start_pos": 196336959, "end_pos": 196371174, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012037", "url": "https://www.ensembl.org/id/ENSSSCG00000012037" } ] } } ], "crossref": [ { "id": "F1SH07", "url": "https://alphafold.ebi.ac.uk/entry/F1SH07", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012037", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012037", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525128", "url": "https://www.ncbi.nlm.nih.gov/gene/100525128", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525128", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525128", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MKNICLW", "url": "https://omabrowser.org/oma/group/MKNICLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SH07", "url": "https://www.orthodb.org/?gene=F1SH07", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12214", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12214", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12214:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12214:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07842", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07842", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132801", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SH07", "url": "https://www.uniprot.org/uniprotkb/F1SH07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH07-1", "url": "https://www.uniprot.org/uniprotkb/F1SH07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPGTGEEPGPGDRAPGGESLLGPGLPPPPSALAPGPGTEAGGCFPGGAEPGNGLKPRKRPRENKEVPRASLLSFQDEDEENEEVFKVKKSSYSKKIVKLLKKEYKEDLEKSKIKTELNSLADNELPLDKTGHVKDASQEDGVIISEHGEDEMDMESEKEEEKPKAGGTFSNALSSLNVLRPGEIPDAAFIHAARKKRQMARELGDFTPHDNEPGKGRLVREDENDASDDEDDDEKRRIVFSVKEKSQRQKIAEEIGIEGSDDDALVAGEQDEELSRWEQEQIRKGINIPQVQASQPTEVNMYYPNTYQTMPYGSSYGIPYSYTAYGSSDAKSQKTDNTVPFKTPSNEMTPVTIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQSRVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGKMADHLEGLSSDDEETSTDITNFNLEKDRISKESSKVFEDVLESFYSIDCIKSQFEAWRSKYYMSYKDAYIGLCLPKLFNPLIRLQLLTWTPLEAKCRDFENMLWFESLLFYGCEEREQEKDDVDVALLPTIVEKVILPKLTVIAENMWDPFSTTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIKKAQNVINCFPKQWFMNLKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHALSVASDHNVKEFKSLIEGK", "length": 916, "header": "tr|F1SH07-1|F1SH07_PIG Isoform 1 of PAX3 and PAX7 binding protein 1 OS=Sus scrofa OX=9823 GN=PAXBP1 PE=3 SV=2 CANONICAL=F1SH07-1" }, "isoforms": [ { "isoform_ac": "F1SH07-1", "url": "https://www.uniprot.org/uniprotkb/F1SH07/entry#F1SH07-1", "sequence": { "sequence": "MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPGTGEEPGPGDRAPGGESLLGPGLPPPPSALAPGPGTEAGGCFPGGAEPGNGLKPRKRPRENKEVPRASLLSFQDEDEENEEVFKVKKSSYSKKIVKLLKKEYKEDLEKSKIKTELNSLADNELPLDKTGHVKDASQEDGVIISEHGEDEMDMESEKEEEKPKAGGTFSNALSSLNVLRPGEIPDAAFIHAARKKRQMARELGDFTPHDNEPGKGRLVREDENDASDDEDDDEKRRIVFSVKEKSQRQKIAEEIGIEGSDDDALVAGEQDEELSRWEQEQIRKGINIPQVQASQPTEVNMYYPNTYQTMPYGSSYGIPYSYTAYGSSDAKSQKTDNTVPFKTPSNEMTPVTIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQSRVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGKMADHLEGLSSDDEETSTDITNFNLEKDRISKESSKVFEDVLESFYSIDCIKSQFEAWRSKYYMSYKDAYIGLCLPKLFNPLIRLQLLTWTPLEAKCRDFENMLWFESLLFYGCEEREQEKDDVDVALLPTIVEKVILPKLTVIAENMWDPFSTTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIKKAQNVINCFPKQWFMNLKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHALSVASDHNVKEFKSLIEGK", "length": 916, "header": "tr|F1SH07-1|F1SH07_PIG Isoform 1 of PAX3 and PAX7 binding protein 1 OS=Sus scrofa OX=9823 GN=PAXBP1 PE=3 SV=2 CANONICAL=F1SH07-1" }, "locus": { "chromosome": "13", "start_pos": 196371117, "end_pos": 196338045, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013169.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013169.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012819.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012819.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SH07", "url": "https://www.uniprot.org/uniprotkb/F1SH07" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525128", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525128", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A8C8-1", "protein_name": "PAX3 and PAX7 binding protein 1", "gene_name": "Paxbp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPASGEEPGPGGGDRAPAGESLLGPGPPPPPSAHTPGLGAEAGGGIPGGAEPGNGLKQRKRPRENKEVPRASLLSFQDEEEENEEVFKVKKSSYSKKIVKLLKKEYKEDLEKSKIKTELSAAADSDQPLDKMCHAKDTNPEDGVVISEHGEDEMDMESEKEEEKPKAGGAFSNALSSLNVLRPGEIPDAAFIHAARKKRQLARELGDFTPHDSEPGKGRLVREDENDASDDEDDDEKRRIVFSVKEKSQRQKIAEEIGIEGSDDDALVTGEQDEELSRWEQEQIRKGINIPQVQASQPTEVNMYYQNTYQTMPYGASYGVPYSYTAYGSSDAKSQKSDNTVPFKTPSNEAAPITIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQSRVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEEAGIPYLNPPINLLSRTRRRQAREQTGQMADHLEGLSSDDEETSTDITNFNLERDRILKESSKVFEDVLESFCSIDCIKAQFEAWRSKYYMSYKDAYIGLCLPKLFNPLIRLQLLTWTPLEAKCRDFENMLWFESLLFYGCEEREQEKDDVDVALLPTIVEKVILPKLTVIAENMWDPFSTTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIRKAQNVINCFPKQWFVNLKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHAVSVASDHNVKEVKSLIEGK", "length": 929 }, "evidence": [ { "id": "F1SH07", "url": "https://omabrowser.org/oma/group/F1SH07/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9QDJ4-1", "protein_name": "PAX3- and PAX7-binding protein 1", "gene_name": "paxbp1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFKKAKRCNFRRRNDSEDEEKEEQQQSGGPGAEDSASPSESGSGPAPGANVLNNHGNGFQPGAVKAVKEKKKRKEIREEPKASLLSFQDDEDEAEVFRVKKSNHSKKIVKQLKKEYKEDLEKTVPEQSTRIGGQNLTIKEEPLEGSRASSEQGEEEMEVDSNEDQEEEGDQKSAGGAFKENLSALSLLRPGEIPDAAFIHAARKRRQMARELGGDTPLVENDPTNKRLVHEDENGDMDDDEDEKRIVFSGVNTKSQRQKIAEEIGIEGSDDEALDNGQDEEVSRWEQEQIRKGISIPQVQTQPEDTSMYYQGSYDAQPYGASYAMPFNYATAVAGVDNSKPLKAEPSVPYPIPSCELTPITTDLVKKRLQDRLSFMRQGHNTNARRYQQIQEDLEASKKAIRVLEGSSVEAADKYRFLQEMRGYVGDLLECLSEKVPVILELEAAMHQLLRQRASRLVQRRQDDIKDESSEFSSLSSKAVMAPNLDSFGRDRTAYLELAKQRRIAEREARRTRRRQAREQNDKRAEHKEGLSSDDEETSTDITSFDSERERILKESKKVFEDVVEDFHSLDNIKSHFETWRKLYYSCYRDAYIGLCLPKLFNPLIRLQLISWSPLEVECSNFEYMLWFESLLFYGCGEQSALKKEEDVDNNLLPAIVERVLLPKLAVLTDQIWDPLSNSQTYRLVAFMKRLVKDYPTVLHGENRNTQELLRTVIMRIRRTLDDDIFLPLFPKNVMENKNSGAYLFSQRQFWSCVKFLGNILMWDGILSLSVLKDLAIDSTLNRYILSALQTTDASEEHVEKCRRVVECFPVQWFSSLKGQQTLPPLENFCRFLKHLSSSLYRSCVAGSDVEKRNVREHIKEVIRLLGRLNALDHVITVASEHGIKDIKTLLEKK", "length": 894 }, "evidence": [ { "id": "F1SH07", "url": "https://omabrowser.org/oma/group/F1SH07/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1MBJ4-1", "protein_name": "PAX3 and PAX7 binding protein 1", "gene_name": "PAXBP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPPGTGEEPGPGGGGGDRAPAGESLLGPGPPPPPPPPAALTSGTEAGGCLPGGLEPGNGLKPRKRPRENKEVPRASLLSFQDEDEENEEVFKVKKSSYSKKIVKLLKKEYKEDLEKSKIKTELNSSADNEPPLDKAGHVKDTSLEDGVIISEHGEDEMDMESEKEEEKPKAGGAFSNALSSLNVLRPGEIPDAAFIHAARKKRQMARELGDFTPHDSEPGKGRLVREDENDASDDEDDDEKRRIVFSVKEKSQRQKIAEEIGIEGSDDDALVTGEQDEELSRWEQEQIRKGINIPQVQASQPTEVNMYYQNTYQTMPYGSSYGIPYSYSAYGSSDAKSQKTDNTVPFKTPSNEMTPVTIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQSRADSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGKMADHLEGLSSDDEETSTDITNFNLEKDRISKESSKVFEDVLESFYSIDCIKSQFEAWRSKYYTSYKHAYIGLCLPKLLNPLIRLQLLTWTPLEAKCRDFENMLWFESLLFYGCEEREQEKDDVDVALLPTIVEKVILPKLTVIAENMWDPFSTTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIKKAQNVINCFPKQWFVNLKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHAMSVASDHNVKEFKSLIEGK", "length": 922 }, "evidence": [ { "id": "F1SH07", "url": "https://omabrowser.org/oma/group/F1SH07/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P58501-1", "protein_name": "PAX3- and PAX7-binding protein 1", "gene_name": "Paxbp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPASGEEPGPGGGDRAPAGESLLGPGPLPPPPSAHHPGLGAEAGGGISGGAEPGNGLKPRKRPRENKEVPRASLLSFQDEEEENEEVFKVKKSSYSKKIVKLLKKEYKEDLEKSKIKTELNTAADSDQPLDKTCHAKDTNPEDGVVISEHGEDEMDMESEKEEEKPKAGGAFSNALSSLNVLRPGEIPDAAFIHAARKKRQLARELGDFTPHDSEPGKGRLVREDENDASDDEDDDEKRRIVFSVKEKSQRQKIAEEIGIEGSDDDALVTGEQDEELSRWEQEQIRKGINIPQVQASQPSEVNVYYQNTYQTMPYGASYGIPYSYTAYGSSDAKSQKTDNTVPFKTPSNEMAPVTIDLVKRQLKDRLDSMKELHKTNQQQHEKHLQSRVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGQMADHLEGLSSDDEETSTDITNFNLEKDRILKESSKVFEDVLESFYSIDCIKAQFEAWRSKYYMSYKDAYIGLCLPKLFNPLIRLQLLTWTPLEAKCRDFETMLWFESLLFYGCEDREQEKDEADVALLPTIVEKVILPKLTVIAETMWDPFSTTQTSRMVGITMKLINGYPSVVNADNKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIRKAQNVINCFPKQWFVNLKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHAISVASDHNVKEVKSLIEGK", "length": 919 }, "evidence": [ { "id": "F1SH07", "url": "https://omabrowser.org/oma/group/F1SH07/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54JF1-1", "protein_name": "GC-rich sequence DNA-binding factor-like protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFSSINKNKQRQIRKKVIETEENNEDDEKKKLENENENGNENEQTIKSIVVEQAKKKKGANTFSTKNKIAKKATLNLFSFGEDEENGEQEQDSEQQQQQQFNSSIKFNPISVRKNDSIFEDSKTTTINNESLGQYTTEMINSLKKNTSSKPTKSSSNDNNHNDNNHNDNNDIDYKMDIDHQQFKDDHDDKENTTSSSSSSFTIPTVEQIKLAKEKRQRVRDGKWQDTTEKSSSSSTSTSKSLSKDFLPLKVSANNGNDKDDNDNGSRLIREEDDDDEMEEYNIKPSNTIKFGDPGKSNKRDEVGQAVNIENSKNKNDDQDEDEDEDEEIIRWRLEQIKKGGGLKDSQLQSIEFQKRKMEKELLLLGPSSENSLSPYYKSSSYLINSPKLSNNSNNNNNNNNNNQQQHSFIESICKDLNSILIQLNEVKHNHESEFEKVQEALRDSVIQLSIMESEKHVSHDQYIYYDEIKSYCNNMIDCLSEKIPQIEQLDDKYIELLKDYAYDIRKQFKQTLHDQINDIQDNELSNNNKISFNNKEGEDKEDLDEFGRDRSHYEKSSRKKRLEQYKQLIVSLNNTDGNDDFKLHQISDENFYKNEKEKILNSIKSIMDDVDPDFCDINYIADKFKHWKSKDLKSYQKAQMPFIMPSILAPFIRLQMIDWSPLDDIYFDTMSWYNQLFSYGGGGGDDDDILIPKLVEKIIIPKVETFITYIWNPLSKSQTTNLKNTIDEILIYINDENHQNNNNNNNNNNNNNNNNNNNNNNNNVNQEVKFLFSQILSTLNYSISNGNLLIPYSNRDLTFSIKMYMYSLTMLDSIKIWSSNYQYIQLDSLMNLSDDIIDFQILPFLHKIYSLQHHHNYQQHQQQQQQQQQQQQQSFNIDNLFYLFELFYQYLLTLPWSNKKYKSSVISLLLKLKNDHENENGGLLNVENFSKLNNLYIPYFT", "length": 943 }, "evidence": [ { "id": "F1SH07", "url": "https://omabrowser.org/oma/group/F1SH07/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9FNN3-1", "protein_name": "Transcriptional repressor ILP1", "gene_name": "ILP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGSNRPKNFRRRGDDGGDEIDGKVATPSSKPTSTLSSSKPKTLSASAPKKKLLSFADDEEEEEDGAPRVTIKPKNGRDRVKSSSRLGVSGSSHRHSSTKERRPASSNVLPQAGSYSKEALLELQKNTRTLPYSRSSANAEPKVVLKGLIKPPQDHEQQSLKDVVKQVSDLDFDEEGEEEQHEDAFADQAAIIRAKKERMRQSRSAPAPDYISLDGGIVNHSAVEGVSDEDADFQGIFVGPRPQKDDKKGVFDFGDENPTAKETTTSSIYEDEDEEDKLWEEEQFKKGIGKRMDEGSHRTVTSNGIGVPLHSKQQTLPQQQPQMYAYHAGTPMPNVSVAPTIGPATSVDTLPMSQQAELAKKALKDNVKKLKESHAKTLSSLTKTDENLTASLMSITALESSLSAAGDKYVFMQKLRDFISVICDFMQNKGSLIEEIEDQMKELNEKHALSILERRIADNNDEMIELGAAVKAAMTVLNKHGSSSSVIAAATGAALAASTSIRQQMNQPVKLDEFGRDENLQKRREVEQRAAARQKRRARFENKRASAMEVDGPSLKIEGESSTDESDTETSAYKETRDSLLQCADKVFSDASEEYSQLSKVKARFERWKRDYSSTYRDAYMSLTVPSIFSPYVRLELLKWDPLHQDVDFFDMKWHGLLFDYGKPEDGDDFAPDDTDANLVPELVEKVAIPILHHQIVRCWDILSTRETRNAVAATSLVTNYVSASSEALAELFAAIRARLVEAIAAISVPTWDPLVLKAVPNTPQVAAYRFGTSVRLMRNICMWKDILALPVLENLALSDLLFGKVLPHVRSIASNIHDAVTRTERIVASLSGVWTGPSVTRTHSRPLQPLVDCTLTLRRILEKRLGSGLDDAETTGLARRLKRILVELHEHDHAREIVRTFNLKEAV", "length": 908 }, "evidence": [ { "id": "F1SH07", "url": "https://omabrowser.org/oma/group/F1SH07/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VI54-1", "protein_name": "GCF C-terminal domain-containing protein", "gene_name": "Dmel\\CG1965", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSLFRKPKKIQRRVFSSNADEEEDGASLDPDAEMEAPPPPIISGKREKEKSRKAIKPQEDNSKPKALLSFADDEDDGEVFQVRKSSHSKKVMRMLDKERRKKKREERAENSGHPGGENGSTQHLESSGGPSSGPPNSNSNPANAGRYKSASDQSKSKKSDNHMIQTEIRTDDFVLVVKKSETPEAILNGRAALCAGREDMSDEEDQQSEDGGHDKTRHRFSKPEHLKQMLESGSIPDAAMIHAARKRRQRAREQGAGDYIPIEEPKEPAKLSNRLPCEDVEGDQSDDEERMDMNDITGRKEREERREQFYAVENDSTDGDSDREMNEWENQQIRKGVTAAQLVHSQHETVLSRFMIKPAPSGIGTGMDDGDSTAAQSTSTLLEQAYAKNALERTNLAAAVRSSVKTKKEKAKATALRTPQEILAAIQSRLSELKERSADHSASMARISTELKALKLQQLECQQNAPTAAAKYKFYQEIKCYVNDLVDCLSEKAPVIYDLEKRALQQYGKNQRYLVNRRRQDVRDQAKEIAESAKPITAASRRTPDYEEQVRRAAEREGRRTRRRCERERNDLLSSHLDGMSSDDEIADQQQELSVTTMAQIESQSVDALEDVTDDFSKIELILMKFFAWRKTDMSSYQDAFVSLCLPKVLAPLVRHELVLWSPLLDVYADIENMRWYQACMLYASQADETVEQLKIDPDINLVPALIEKIVLPKVTALVTECWDPLSTTQTLRLVGFINRLGREFPLSGTNKQLNKLFESIMERMRLALENDVFIPIFPKQVQEAKTSFFQRQFCSGLKLFRNFLSWQGILADKLLRELAIGALLNRYLLLAMRVCTPNDAINKAYIIVNTLPTVWLLPNSETLKNMELFIGYIKQTLENCDASNPIFMQSSDKAKQILQRLHSL", "length": 905 }, "evidence": [ { "id": "F1SH07", "url": "https://omabrowser.org/oma/group/F1SH07/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y5B6-1", "protein_name": "PAX3- and PAX7-binding protein 1", "gene_name": "PAXBP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFRKARRVNVRKRNDSEEEERERDEEQEPPPLLPPPGTGEEAGPGGGDRAPGGESLLGPGPSPPSALTPGLGAEAGGGFPGGAEPGNGLKPRKRPRENKEVPRASLLSFQDEEEENEEVFKVKKSSYSKKIVKLLKKEYKEDLEKSKIKTELNSSAESEQPLDKTGHVKDTNQEDGVIISEHGEDEMDMESEKEEEKPKTGGAFSNALSSLNVLRPGEIPDAAFIHAARKKRQMARELGDFTPHDNEPGKGRLVREDENDASDDEDDDEKRRIVFSVKEKSQRQKIAEEIGIEGSDDDALVTGEQDEELSRWEQEQIRKGINIPQVQASQPAEVNMYYQNTYQTMPYGSSYGIPYSYTAYGSSDAKSQKTDNTVPFKTPSNEMTPVTIDLVKKQLKDRLDSMKELHKTNRQQHEKHLQSRVDSTRAIERLEGSSGGIGERYKFLQEMRGYVQDLLECFSEKVPLINELESAIHQLYKQRASRLVQRRQDDIKDESSEFSSHSNKALMAPNLDSFGRDRALYQEHAKRRIAEREARRTRRRQAREQTGKMADHLEGLSSDDEETSTDITNFNLEKDRISKESGKVFEDVLESFYSIDCIKSQFEAWRSKYYTSYKDAYIGLCLPKLFNPLIRLQLLTWTPLEAKCRDFENMLWFESLLFYGCEEREQEKDDVDVALLPTIVEKVILPKLTVIAENMWDPFSTTQTSRMVGITLKLINGYPSVVNAENKNTQVYLKALLLRMRRTLDDDVFMPLYPKNVLENKNSGPYLFFQRQFWSSVKLLGNFLQWYGIFSNKTLQELSIDGLLNRYILMAFQNSEYGDDSIKKAQNVINCFPKQWFMNLKGERTISQLENFCRYLVHLADTIYRNSIGCSDVEKRNARENIKQIVKLLASVRALDHAMSVASDHNVKEFKSLIEGK", "length": 917 }, "evidence": [ { "id": "F1SH07", "url": "https://omabrowser.org/oma/group/F1SH07/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SH07", "url": "https://www.uniprot.org/uniprotkb/F1SH07" } ], "pmid": "" }, { "name": "histone methyltransferase binding", "id": "GO:1990226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990226", "evidence": [ { "database": "UniProtKB", "id": "F1SH07", "url": "https://www.uniprot.org/uniprotkb/F1SH07" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SH07", "url": "https://www.uniprot.org/uniprotkb/F1SH07" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SH07", "url": "https://www.uniprot.org/uniprotkb/F1SH07" } ], "pmid": "" }, { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F1SH07", "url": "https://www.uniprot.org/uniprotkb/F1SH07" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 791, "end_pos": 793, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SH07-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 916, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SH07-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SH07" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SH07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH07" }, { "id": "PF07842", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GCF C-terminal", "eco_id": "ECO_0000259", "start_pos": 595, "end_pos": 806, "start_aa": "Asp", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 }, { "start_pos": 791, "end_pos": 793 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SH22-1", "uniprot_ac": "F1SH22", "uniprot_id": "F1SH22_PIG", "mass": { "chemical_mass": 55993.0, "monoisotopic_mass": 55993.0 }, "refseq": { "ac": "XP_020947662", "name": "tryptophan 5-hydroxylase 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947662" }, "gene_names": [ { "name": "TPH2", "type": "recommended", "evidence": [ { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22" } ] }, { "name": "TPH2", "type": "synonym", "evidence": [ { "id": "XP_020947662", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947662" } ] } ], "protein_names": [ { "name": "Tryptophan 5-hydroxylase 2", "type": "recommended", "evidence": [ { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22/entry#names_and_taxonomy" } ] }, { "name": "1.14.16.4", "type": "synonym", "evidence": [ { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22/entry#names_and_taxonomy" } ] }, { "name": "Tryptophan 5-monooxygenase 2", "type": "synonym", "evidence": [ { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22/entry#names_and_taxonomy" } ] }, { "name": "tryptophan 5-hydroxylase 2", "type": "synonym", "evidence": [ { "id": "XP_020947662", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947662" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SH22", "url": "https://www.uniprot.org/uniprotkb/F1SH22" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TPH2", "url": "https://www.uniprot.org/uniprotkb/F1SH22", "locus": { "chromosome": "5", "start_pos": 36017509, "end_pos": 35918370, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021122", "url": "https://www.ensembl.org/id/ENSSSCG00000021122" } ] } } ], "crossref": [ { "id": "F1SH22", "url": "https://alphafold.ebi.ac.uk/entry/F1SH22", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021122", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021122", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03346", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03346", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627725", "url": "https://www.ncbi.nlm.nih.gov/gene/100627725", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019774", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019774", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036329", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036329", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036951", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036951", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627725", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627725", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VHFNPYT", "url": "https://omabrowser.org/oma/group/VHFNPYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SH22", "url": "https://www.orthodb.org/?gene=F1SH22", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11473", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11473", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11473:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11473:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00351", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00351", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-209931", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209931", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020947662", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947662", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16709", "url": "https://www.rhea-db.org/rhea/16709", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SH22", "url": "https://www.uniprot.org/uniprotkb/F1SH22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH22-1", "url": "https://www.uniprot.org/uniprotkb/F1SH22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQPAMMMFSSKYWARRGLSLDSAVPEEHQLLGSLTLNKSNSGKNDDKKGNKGSGKSDTATESGKTAVVFSLKNEVGGLVKALKLFQEKHVNMVHIESRKSRRRSSEVEIFVDCECGKTEFNELIQSLKFQTTIVTLNPPENIWTEEEELEDVPWFPRKISELDKCSHRVLMYGSELDADHPGFKDNVYRQRRKYFVDLAMGYKYGQPIPRVEYTEEETKTWGIVFRELSKLYPTHACREYLKNFPLLTKYCGYREDNVPQLEDVSVFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYVRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYFVSESFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALNKMNQYLGI", "length": 491, "header": "tr|F1SH22-1|F1SH22_PIG Isoform 1 of Tryptophan 5-hydroxylase 2 OS=Sus scrofa OX=9823 GN=TPH2 PE=3 SV=3 CANONICAL=F1SH22-1" }, "isoforms": [ { "isoform_ac": "F1SH22-1", "url": "https://www.uniprot.org/uniprotkb/F1SH22/entry#F1SH22-1", "sequence": { "sequence": "MQPAMMMFSSKYWARRGLSLDSAVPEEHQLLGSLTLNKSNSGKNDDKKGNKGSGKSDTATESGKTAVVFSLKNEVGGLVKALKLFQEKHVNMVHIESRKSRRRSSEVEIFVDCECGKTEFNELIQSLKFQTTIVTLNPPENIWTEEEELEDVPWFPRKISELDKCSHRVLMYGSELDADHPGFKDNVYRQRRKYFVDLAMGYKYGQPIPRVEYTEEETKTWGIVFRELSKLYPTHACREYLKNFPLLTKYCGYREDNVPQLEDVSVFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYVRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYFVSESFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALNKMNQYLGI", "length": 491, "header": "tr|F1SH22-1|F1SH22_PIG Isoform 1 of Tryptophan 5-hydroxylase 2 OS=Sus scrofa OX=9823 GN=TPH2 PE=3 SV=3 CANONICAL=F1SH22-1" }, "locus": { "chromosome": "5", "start_pos": 36015771, "end_pos": 35918569, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000553.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000553.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000543.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000543.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SH22", "url": "https://www.uniprot.org/uniprotkb/F1SH22" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627725", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627725", "resource": "KEGG Pathway" }, { "id": "R-SSC-209931", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209931", "resource": "Reactome", "description": "Serotonin and melatonin biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YNZ0-1", "protein_name": "Tryptophan 5-hydroxylase 2", "gene_name": "TPH2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQPAMMMFSSKYWARRGFSLDSALPEERPGGLTINRSSSGKNEDKKGNKGNGKGESVSEGGKTAVVFSLKNEVGGLVKALRLFQEKHVSMVHIESRKSKRRNSEVEIFVDCDCSKKEFNELIQLLKFQTNIVSLNPPENIWTDEEDLDCVPWFPRKISELDKCSQRVLMYGSELDADHPGFKDNVYRQRRKYFVDVAMSYKYGQPIPRVEYTAEEIKTWGVVFRELSKLYPTHACREYLKNFPLLTKYCGYREDNVPQLEDVSIFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYVRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKAKVKTFDPKTTCLQECLITTFQEAYFVSESFEEAKEKMRDFAKSINRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTSMTSSLLLQKGSSLLADFWEMFCDEMTDSTPTFTRLPKHKQLAHILHCWTFPSTGICNAPSKP", "length": 538 }, "evidence": [ { "id": "F1SH22", "url": "https://omabrowser.org/oma/group/F1SH22/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BGX6-1", "protein_name": "Tryptophan 5-hydroxylase 2", "gene_name": "TPH2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQPAMMMFSSKYWARRGLSLDSAVPEEHQLLTSLTLNKTNSGKNDDKKGNKGSSKNDTATESGKTAVVFSLKNEVGGLVKALKLFQEKHVNMIHIESRKSRRRSSEVEIFVDCECGKTEFNELIQSLKFQTTIVTLNPPENIWTEEEELEDVPWFPRKISELDRCSHRVLMYGSELDADHPGFKDNVYRQRRKYFVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYLKNFPLLTKHCGYREDNVPQLEDVAAFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYVRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYFVSESFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALNKMNQYLGI", "length": 491 }, "evidence": [ { "id": "F1SH22", "url": "https://omabrowser.org/oma/group/F1SH22/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8CGU9-1", "protein_name": "Tryptophan 5-hydroxylase 2", "gene_name": "Tph2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQPAMMMFSSKYWARRGLSLDSAVPEEHQILGGLTQNKATASKSEDKRSGKDTSESSKTAVVFSLKNEVGGLVRALRLFQEKHVNMLHIESRRSRRRSSEVEIFVDCECGKTEFNELIQLLKFQTTIVTLNPPDNIWTEEEELEDVPWFPRKISELDRCSHRVLMYGTELDADHPGFKDNVYRQRRKYFVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYLKNFPLLTKYCGYREDNVPQLEDVSMFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYVRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQDAYFVSESFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALNKMNQYLGI", "length": 485 }, "evidence": [ { "id": "F1SH22", "url": "https://omabrowser.org/oma/group/F1SH22/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CGV2-1", "protein_name": "Tryptophan 5-hydroxylase 2", "gene_name": "Tph2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQPAMMMFSSKYWARRGLSLDSAVPEDHQLLGSLTQNKAIKSEDKKSGKEPGKGDTTESSKTAVVFSLKNEVGGLVKALRLFQEKHVNMLHIESRRSRRRSSEVEIFVDCECGKTEFNELIQLLKFQTTIVTLNPPESIWTEEEDLEDVPWFPRKISELDRCSHRVLMYGTELDADHPGFKDNVYRQRRKYFVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYLKNLPLLTKYCGYREDNVPQLEDVSMFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYVRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKSFDPKTTCLQECLITTFQDAYFVSDSFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALNKMNQYLGI", "length": 488 }, "evidence": [ { "id": "F1SH22", "url": "https://omabrowser.org/oma/group/F1SH22/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IWU9-1", "protein_name": "Tryptophan 5-hydroxylase 2", "gene_name": "TPH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQPAMMMFSSKYWARRGFSLDSAVPEEHQLLGSSTLNKPNSGKNDDKGNKGSSKREAATESGKTAVVFSLKNEVGGLVKALRLFQEKRVNMVHIESRKSRRRSSEVEIFVDCECGKTEFNELIQLLKFQTTIVTLNPPENIWTEEEELEDVPWFPRKISELDKCSHRVLMYGSELDADHPGFKDNVYRQRRKYFVDVAMGYKYGQPIPRVEYTEEETKTWGVVFRELSKLYPTHACREYLKNFPLLTKYCGYREDNVPQLEDVSMFLKERSGFTVRPVAGYLSPRDFLAGLAYRVFHCTQYIRHGSDPLYTPEPDTCHELLGHVPLLADPKFAQFSQEIGLASLGASDEDVQKLATCYFFTIEFGLCKQEGQLRAYGAGLLSSIGELKHALSDKACVKAFDPKTTCLQECLITTFQEAYFVSESFEEAKEKMRDFAKSITRPFSVYFNPYTQSIEILKDTRSIENVVQDLRSDLNTVCDALNKMNQYLGI", "length": 490 }, "evidence": [ { "id": "F1SH22", "url": "https://omabrowser.org/oma/group/F1SH22/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "tryptophan 5-monooxygenase activity", "id": "GO:0004510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004510", "evidence": [ { "database": "UniProtKB", "id": "F1SH22", "url": "https://www.uniprot.org/uniprotkb/F1SH22" } ], "pmid": "" }, { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1SH22", "url": "https://www.uniprot.org/uniprotkb/F1SH22" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "F1SH22", "url": "https://www.uniprot.org/uniprotkb/F1SH22" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "serotonin biosynthetic process", "id": "GO:0042427", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042427", "evidence": [ { "database": "UniProtKB", "id": "F1SH22", "url": "https://www.uniprot.org/uniprotkb/F1SH22" } ], "pmid": "" }, { "name": "aromatic amino acid metabolic process", "id": "GO:0009072", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009072", "evidence": [ { "database": "UniProtKB", "id": "F1SH22", "url": "https://www.uniprot.org/uniprotkb/F1SH22" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16709", "name": "", "equation": "(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin + L-tryptophan + O2 = 5-hydroxy-L-tryptophan + (4aS,6R)-4a-hydroxy-L-erythro-5,6,7,8-tetrahydrobiopterin", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16709", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16709" } ] }, { "id": "R-SSC-209828", "name": "Tryptophan is hydroxylated", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-29500" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-209828", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209828" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-29500", "participant_name": "L-Trp [cytosol]", "crossref": [ { "id": "57912", "database": "ChEBI", "url": "" }, { "id": "ZINC000000083315", "database": "ZINC", "url": "" }, { "id": "C00078", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SH22-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 491, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SH22-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SH22" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22" }, { "id": "PS51671", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51671" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ACT", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 141, "start_aa": "Ala", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22" }, { "id": "PS51410", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51410" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Biopterin-dependent aromatic amino acid hydroxylase family profile", "eco_id": "ECO_0000259", "start_pos": 140, "end_pos": 486, "start_aa": "Glu", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22#function" }, { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22" }, { "id": "PIRSR000336-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000336-1" } ], "binding_site_uniprot": 319, "amino_acid": "His", "chebi_lig_id": "CHEBI_24875", "ligand": "Fe cation", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 319, "end_pos": 319, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22#function" }, { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22" }, { "id": "PIRSR000336-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000336-1" } ], "binding_site_uniprot": 324, "amino_acid": "His", "chebi_lig_id": "CHEBI_24875", "ligand": "Fe cation", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 324, "end_pos": 324, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22#function" }, { "id": "F1SH22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH22" }, { "id": "PIRSR000336-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000336-1" } ], "binding_site_uniprot": 364, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_24875", "ligand": "Fe cation", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 364, "end_pos": 364, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SH26-1", "uniprot_ac": "F1SH26", "uniprot_id": "F1SH26_PIG", "mass": { "chemical_mass": 84260.0, "monoisotopic_mass": 84260.0 }, "refseq": { "ac": "NP_001230390", "name": "solute carrier family 7 member 14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230390" }, "gene_names": [ { "name": "SLC7A14", "type": "recommended", "evidence": [ { "id": "F1SH26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH26" } ] }, { "name": "SLC7A14", "type": "synonym", "evidence": [ { "id": "NP_001230390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230390" } ] } ], "protein_names": [ { "name": "Solute carrier family 7 member 14", "type": "synonym", "evidence": [ { "id": "F1SH26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH26/entry#names_and_taxonomy" } ] }, { "name": "probable cationic amino acid transporter", "type": "synonym", "evidence": [ { "id": "NP_001230390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230390" } ] }, { "name": "solute carrier family 7 (orphan transporter), member 14", "type": "synonym", "evidence": [ { "id": "NP_001230390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230390" } ] }, { "name": "solute carrier family 7 member 14", "type": "synonym", "evidence": [ { "id": "NP_001230390", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230390" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SH26", "url": "https://www.uniprot.org/uniprotkb/F1SH26" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC7A14", "url": "https://www.uniprot.org/uniprotkb/F1SH26", "locus": { "chromosome": "13", "start_pos": 109115006, "end_pos": 109231433, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011748", "url": "https://www.ensembl.org/id/ENSSSCG00000011748" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011748", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011748", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153975", "url": "https://www.ncbi.nlm.nih.gov/gene/100153975", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029485", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029485", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153975", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153975", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GFVMYFY", "url": "https://omabrowser.org/oma/group/GFVMYFY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SH26", "url": "https://www.orthodb.org/?gene=F1SH26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43243", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43243", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43243:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43243:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13906", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13906", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230390", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230390", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SH26", "url": "https://www.uniprot.org/uniprotkb/F1SH26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH26-1", "url": "https://www.uniprot.org/uniprotkb/F1SH26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGFLTSLDPRRVQWGAAWYAMYSRILRTKPVESMLEGTGTTTAHGTKLAQVLTTMDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAALASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMVDSVGTLNGLGKGEQSYPDLLALVIAIIVTVIVALGVKNSVGFNNVLNVLNLAVWVFIMIAGFFFINGKYWAEGRFLPHGWSGVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLIICLTAYVSVSMILTLMVPYDAIDTESPLMEMFVARGFYAAKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLSLLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKEVCSPVSEGEEFSGPATNTCGAKNLPSLGDNEMLIGKSDKSTYNVNHPNYGTVDMTTGIEADESENIYLIKLKKLIGPRYYTMRIRLGLPGKMDRPTAATGHTVTICVLLLFILMFIFCSFIIFGSDYISEQSWWAILLVILMVLLISALVFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFVGMLIYFGYGIWNSTLEISAREEALHQSMYQRYDVDDPFSVEEGFSYATEGESQENWGGPAEDKGFYYQQMSDAQANTRTSSKAKSKSKHKQNSEALIANDELDYSPE", "length": 771, "header": "tr|F1SH26-1|F1SH26_PIG Isoform 1 of Solute carrier family 7 member 14 OS=Sus scrofa OX=9823 GN=SLC7A14 PE=1 SV=1 CANONICAL=F1SH26-1" }, "isoforms": [ { "isoform_ac": "F1SH26-1", "url": "https://www.uniprot.org/uniprotkb/F1SH26/entry#F1SH26-1", "sequence": { "sequence": "MSGFLTSLDPRRVQWGAAWYAMYSRILRTKPVESMLEGTGTTTAHGTKLAQVLTTMDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAALASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMVDSVGTLNGLGKGEQSYPDLLALVIAIIVTVIVALGVKNSVGFNNVLNVLNLAVWVFIMIAGFFFINGKYWAEGRFLPHGWSGVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLIICLTAYVSVSMILTLMVPYDAIDTESPLMEMFVARGFYAAKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLSLLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKEVCSPVSEGEEFSGPATNTCGAKNLPSLGDNEMLIGKSDKSTYNVNHPNYGTVDMTTGIEADESENIYLIKLKKLIGPRYYTMRIRLGLPGKMDRPTAATGHTVTICVLLLFILMFIFCSFIIFGSDYISEQSWWAILLVILMVLLISALVFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFVGMLIYFGYGIWNSTLEISAREEALHQSMYQRYDVDDPFSVEEGFSYATEGESQENWGGPAEDKGFYYQQMSDAQANTRTSSKAKSKSKHKQNSEALIANDELDYSPE", "length": 771, "header": "tr|F1SH26-1|F1SH26_PIG Isoform 1 of Solute carrier family 7 member 14 OS=Sus scrofa OX=9823 GN=SLC7A14 PE=1 SV=1 CANONICAL=F1SH26-1" }, "locus": { "chromosome": "13", "start_pos": 109168859, "end_pos": 109115222, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012859.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012859.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012519.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012519.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 126, "start_aa": "Thr", "end_pos": 126, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr126", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SH26", "url": "https://www.uniprot.org/uniprotkb/F1SH26" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153975", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153975", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z1U2-1", "protein_name": "Solute carrier family 7 member 14", "gene_name": "SLC7A14", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSILSRLDPRRVPWGAAGHALRSRVLRTKPVESMLEGTGTAGGQGTRLAKVLTTLDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMINSVGTLNGLGKGEESYPDLLALVIAIIVTIIVAMGVKNSVGLNNVLNVINLAVWVFIMIAGLFFIKSDNWSEGQFLPFGWPGVLKGAATCFYAFIGFDIIATTGEEAKSPNTSIPYAITASLVACLTAYVSVSIILTLMVPYDAIDTESPLMEMFVARGFYAAKFIVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLSHVSSYTETPVVACIVSGFLAALLSLLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKEACSPGSEGEEFTGPPTNTCGAKNLPSLGDNEMLIGKSDKSTYNVNHPNYGTVDMTSGIEADESENIYLIKLKKLIGPRYYTMRIHLGLPGKMDRPTVATGHTVTTCVLLLFVLMFIFCSFIIFGSDYIYEQSWWAILLVVLMILLIVVLVFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTVTWIRFAVWCFVGLLIYFGYGMWNSTLEISAREEALHQSTYQRYDVDVDPFSVDDGFSYATEGESYPDWGPPEDKGFSYQQMAGAKESHRTSSRSKSKGRHKPSSEALIANDELDYSPE", "length": 771 }, "evidence": [ { "id": "F1SH26", "url": "https://omabrowser.org/oma/group/F1SH26/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0JNI9-1", "protein_name": "Solute carrier family 7 member 14", "gene_name": "SLC7A14", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGFLTSLDPRRVQWGAAWYAMHSRILRTKPVESMLEGTGATTAHGTKLAQVLTTMDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMVDSVGTLNGLGKGEQSYPDLLALVIAIIVTIIVALGVKNSVGFNNVLNVLNLAVWVFIMIAGFFFINGKYWAEGQFLPYGWSGVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLVICLTAYVSVSMILTLMVPYDTIDTESPLMEMFVARGFYAAKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLSLLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKEVCSPVSEGEEFSGPATNTCGAKNLPSLGDNEMLIGKSDKSTYNVNHPNYGTVDMTTGIEADESENIYLIKLKKLIGPRYYTMRIQLGLPGKMDRPTAATGHTVTICVLLLFILMFVFCSFIIFGSDYISEQSWWAILLVVLMVLLISALVFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFVGMLIYFGYGIWNSTLEISAREEALHQSTYQRYDVDDPFSVEEGFSYATEGESQENWGGPAEDKGFYYQQMSDTQPNTRTSSKAKSKSKHKQNSEALIANDELDYSPE", "length": 771 }, "evidence": [ { "id": "F1SH26", "url": "https://omabrowser.org/oma/group/F1SH26/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B0UYF2-1", "protein_name": "Probable cationic amino acid transporter", "gene_name": "slc7a14a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSGLFAKLDPRRVQWGANWFAFRSRVLRTKPVESMLETSGGTGAHGTKLARVLSTVDLVSLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHSISGFMINHIGTLNGLGKGEQSYPDILALVIGILVTVIVALGVKNSVGFNNVLNVINLVVWVFIMIAGLFFVSGSNWDEGRFLPYGWSGVMQGAATCFYAFIGFDIIATTGEEAKSPNTSIPYAITASLVTCLTAYVSVSVILTLMVPYTEIDSDAPLMEMFSLHGFQTAKYIVAIGSIAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSTYTETPAVACVVSGFLSALLALLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPEGDIHGFVNFLSEQNSKRKEGVLAECEKEACSPVSEGDDYGGVPTNTCGAKNLPSLGDNEMLIGKPDKSTYTASHPNYGTVDMSSGIESDETDSAYLLKLKKLLGPRYYTMRIRLGLPGKMDRPTVATGRIVTRCVVLLFILIFCFCSLIIFGSGQIADGQWWAVLLLVVLLLVLTLLVFIIIQQPENPKRLPYMAPCVPFVPASAMLVNVYLMLKLSTITWIRFGVWCFVGVLIYFGYGMWNSTLEITAREEEAHASTYQRYDMGVDDNFAVDDDLYPSGDQGPFQNWGKGGQQKQPQQEQSEPQSDGLDRLDNHRTSSSSSHSRAKSKASKPSPGFEALVVDDDLDDPLE", "length": 785 }, "evidence": [ { "id": "F1SH26", "url": "https://omabrowser.org/oma/group/F1SH26/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZSU3-1", "protein_name": "Solute carrier family 7, member 14", "gene_name": "Slc7a14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGFLSSLDPRRVQWGAAWYAMHSRILRTKPVESMLEGTGATSAHGTKLAQVLTTVDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMVDTVGTLNGLGKGEESYPDLLALVIAVIVTIIVALGVKNSVGFNNVLNVLNLAVWVFIMIAGLFFVNGKYWAEGQFLPHGWSGVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLVICLTAYVSVSMILTLMVPYYAIDTESPLMEMFVAHGFYAAKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLSLLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKETCSPVSEGEEFSSPATNTCGAKNLPSLGDNEMLIGKSDKSAYNVNHPNYGTVDMTTGIEADESENIYLIKLKKLIGPRYYTMRIRLGLPGKMDRPTAATGHTVTICVLLLFILMFIFCSFVIFGSEYISGQSWWAILLVVLMLLLITVLVFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFVGMLIYFGYGIWNSTLEISAREQALHQSTYQRYDVDDPFSVEEGFSYATEGESQEDWGGPAEDKGFYYQQMSDAKANSRTSSKAKSKSKHKQNSEALIENDELDCSPE", "length": 771 }, "evidence": [ { "id": "F1SH26", "url": "https://omabrowser.org/oma/group/F1SH26/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HI31-1", "protein_name": "Probable cationic amino acid transporter", "gene_name": "Slc7a14", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGFLASLDPRRVQWGAAWYAMHSRILRTKPVESMLEGTGTTTAHGTKLAQVLTTVDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMVDTVGTLNGLGKGEESYPDLLALVIAVIVTIIVALGVKNSVGFNNVLNVLNLAVWVFIMIAGFFFVNGKYWAEGQFLPHGWSGVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLVICLTAYVTVSMILTLMVPYYAIDTESPLMEMFVAHGFYAAKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLASLLSLLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKETCSPVSEGEEFSSPATNTCGAKNLPSLGDNEMLIGKSDKSTYNVSHPNYGTVDMTTGIEADESENIYLIKLKKLIGPRYYTMRIRLGLPGKMDRPTAATGHTVTICVLLLFILMFVFCSFIIFGSDYISGQSWWAILLVVLMVLLISALVFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFVGMLIYFGYGIWNSTLEISAREQALHQSMYQRYDVDDPFSVEEGFSYATEGESQEDWGGPAEDKGFYYQQMSDAKASTRTSSKAKSKSKHKQNSEALIANDELDCSPE", "length": 771 }, "evidence": [ { "id": "F1SH26", "url": "https://omabrowser.org/oma/group/F1SH26/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BXR1-1", "protein_name": "Solute carrier family 7 member 14", "gene_name": "Slc7a14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGFLASLDPRRVQWGAAWYAMHSRILRTKPVESMLEGTGTTSAHGTKLAQVLTTVDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHSISRWMVDTVGTLNGLGKGEESYPDLLALVIAVIVTIIVALGVKNSVGFNNVLNVLNLAVWVFIMIAGLFFINGKYWAEGQFLPHGWSGVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLVICLTAYVSVSMILTLMVPYYAIDTESPLMEMFVAHGFYAAKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLSLLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKETCSPVSEGEEFSSPATNTCGAKNLPSLGDNEMLIGKSDKSAYNVNHPNYGTVDMTTGIEADESENIYLIKLKKLIGPRYYTMRIRLGLPGKMDRPTAATGHTVTICVLLLFILMFIFCSFIIFGSEYISGQSWWAILLVVLMMLLISVLVFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFVGMLIYFGYGIWNSTLEISAREQALHQSTYQRYDVDDPFSVEEGFSYATEGESQEDWGGPAEDKGFYYQQMSDAKANSRTSSKAKSKSKHKQNSEALIANDELDCSPE", "length": 771 }, "evidence": [ { "id": "F1SH26", "url": "https://omabrowser.org/oma/group/F1SH26/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TBB6-1", "protein_name": "Solute carrier family 7 member 14", "gene_name": "SLC7A14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGFFTSLDPRRVQWGAAWYAMHSRILRTKPVESMLEGTGTTTAHGTKLAQVLTTVDLISLGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSLANHTISRWMADSVGTLNGLGKGEESYPDLLALLIAVIVTIIVALGVKNSIGFNNVLNVLNLAVWVFIMIAGLFFINGKYWAEGQFLPHGWSGVLQGAATCFYAFIGFDIIATTGEEAKNPNTSIPYAITASLVICLTAYVSVSVILTLMVPYYTIDTESPLMEMFVAHGFYAAKFVVAIGSVAGLTVSLLGSLFPMPRVIYAMAGDGLLFRFLAHVSSYTETPVVACIVSGFLAALLALLVSLRDLIEMMSIGTLLAYTLVSVCVLLLRYQPESDIDGFVKFLSEEHTKKKEGILADCEKEACSPVSEGDEFSGPATNTCGAKNLPSLGDNEMLIGKSDKSTYNVNHPNYGTVDMTTGIEADESENIYLIKLKKLIGPHYYTMRIRLGLPGKMDRPTAATGHTVTICVLLLFILMFIFCSFIIFGSDYISEQSWWAILLVVLMVLLISTLVFVILQQPENPKKLPYMAPCLPFVPAFAMLVNIYLMLKLSTITWIRFAVWCFVGLLIYFGYGIWNSTLEISAREEALHQSTYQRYDVDDPFSVEEGFSYATEGESQEDWGGPTEDKGFYYQQMSDAKANGRTSSKAKSKSKHKQNSEALIANDELDYSPE", "length": 771 }, "evidence": [ { "id": "F1SH26", "url": "https://omabrowser.org/oma/group/F1SH26/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VWD3-1", "protein_name": "Cationic amino acid transporter C-terminal domain-containing protein", "gene_name": "Dmel\\CG12531", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKPSDLLLVLEKVKFRVPLPPGVSSTTLLPKLIRTKDVKQLQDGNAQPQKPKLTKCLNTLDLTSLGIGSCCGTGMYLVAGMVAQKIAGPGVIISFIIAAIASIFSGACYAEFGVRVPHTSGSAYMYSYVAVGEFVAFIIGWNMILEYLIGTSACACALSSSFDSLTGNAIARTISESIGTIFGKPPDFIAFGITLLMTCVLAMGASKSVIFNHSLNAVNLATWVFVMAAGLFYVDTKTWSEHQGFLPYGWSGVFSGAATCFYAFIGFDIIATTGEEAHNPQKSIPKAIVGSLVVVLIAYVSVSLVLTLVVPYDHINTGAALVQMWSYVNAPKCRAVVAIGATAGLSVAMFGSMFPMPRVIYAMAQDGLIFRQLSQLWHRTNVPGLATIGSGLAAALVALTVRLEILVEMMSIGTLLAYTLVSTCVLVLRYQPHSTSLVELLPAQLRTPVAHGTASDSRSHVTPAEVLEVPGKLTIKRVTRGMSDSDDSFIDDSPEGFLGGRDDQFLVSDRSENKFYGSVHGAPTGPTGQATAFDAMGLNFVTRKIHDYAYLCPGFFPWINPGQATAESGMYVTKLVGIMFGLIFFLDLFAAIGWSGGLAAFIYFILFIGIFVILLIISRQPQNRYALAFLTPGLPFIPAIAITVNIYLIFKLSILTLVRFTVWMSLGFIMYFYYGITHSSLEQASDDLELHVDYSKNVEEKAVWDQQSYNQTHEPVWASKEVKQPSTEQRYNYGKTTSSSSSAQGSSRSGQGSAPEKPAGRSTAGLNRPVPPPPIAGQAKGSGSGSGPPMERQYTGQFSMFVDEGQFPTWDD", "length": 812 }, "evidence": [ { "id": "F1SH26", "url": "https://omabrowser.org/oma/group/F1SH26/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SH26", "url": "https://www.uniprot.org/uniprotkb/F1SH26" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "amino acid transport", "id": "GO:0006865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006865", "evidence": [ { "database": "UniProtKB", "id": "F1SH26", "url": "https://www.uniprot.org/uniprotkb/F1SH26" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "amino acid transmembrane transporter activity", "id": "GO:0015171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015171", "evidence": [ { "database": "UniProtKB", "id": "F1SH26", "url": "https://www.uniprot.org/uniprotkb/F1SH26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SH26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH26" }, { "id": "PF13906", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13906" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cationic amino acid transporter C-terminal", "eco_id": "ECO_0000259", "start_pos": 627, "end_pos": 677, "start_aa": "Tyr", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 126 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 282, "end_pos": 284 }, { "start_pos": 676, "end_pos": 678 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SH46-1", "uniprot_ac": "F1SH46", "uniprot_id": "F1SH46_PIG", "mass": { "chemical_mass": 109372.0, "monoisotopic_mass": 109372.0 }, "refseq": { "ac": "XP_005657152", "name": "SLIT and NTRK-like protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657152" }, "gene_names": [ { "name": "SLITRK3", "type": "recommended", "evidence": [ { "id": "F1SH46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ] }, { "name": "SLITRK3", "type": "synonym", "evidence": [ { "id": "XP_005657152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657152" } ] } ], "protein_names": [ { "name": "SLIT and NTRK like family member 3", "type": "synonym", "evidence": [ { "id": "F1SH46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH46/entry#names_and_taxonomy" } ] }, { "name": "SLIT and NTRK-like protein 3", "type": "synonym", "evidence": [ { "id": "XP_005657152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657152" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLITRK3", "url": "https://www.uniprot.org/uniprotkb/F1SH46", "locus": { "chromosome": "13", "start_pos": 104449973, "end_pos": 104461119, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011736", "url": "https://www.ensembl.org/id/ENSSSCG00000011736" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011736", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011736", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106504067", "url": "https://www.ncbi.nlm.nih.gov/gene/106504067", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504067", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504067", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TLHKGRM", "url": "https://omabrowser.org/oma/group/TLHKGRM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SH46", "url": "https://www.orthodb.org/?gene=F1SH46", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45773", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45773", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45773:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45773:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005657152", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657152", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH46-1", "url": "https://www.uniprot.org/uniprotkb/F1SH46-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSKGFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDVFRNETFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPMLPTNLFKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIRKTELCPLLSDSEVEASLGIPHLSSGKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQWIETISSVSVVGDVLCRSPENLTHRDVRTIELEVLCPEMLHIAPAGASPAQPRDSHLAEGPTSESPYEFSSPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQCHRLFDDGGGGGGGSGGAGRPTISSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAVSSVQEVGSAECGAPGTQPHGMGEVLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSSSQLNTIVTMNHHHPHPHHPAVGVSGVVAGTGGDLAGFRHHEKNGGVVLFPPGGGCGGSSMLLDRERPQPAPCTVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTQKSDYLELRAKLQTKPDYLEVLEKTTYRF", "length": 978, "header": "tr|F1SH46-1|F1SH46_PIG Isoform 1 of SLIT and NTRK like family member 3 OS=Sus scrofa OX=9823 GN=SLITRK3 PE=3 SV=2 CANONICAL=F1SH46-1" }, "isoforms": [ { "isoform_ac": "F1SH46-1", "url": "https://www.uniprot.org/uniprotkb/F1SH46/entry#F1SH46-1", "sequence": { "sequence": "MKPSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSKGFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDVFRNETFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPMLPTNLFKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIRKTELCPLLSDSEVEASLGIPHLSSGKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQWIETISSVSVVGDVLCRSPENLTHRDVRTIELEVLCPEMLHIAPAGASPAQPRDSHLAEGPTSESPYEFSSPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQCHRLFDDGGGGGGGSGGAGRPTISSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAVSSVQEVGSAECGAPGTQPHGMGEVLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSSSQLNTIVTMNHHHPHPHHPAVGVSGVVAGTGGDLAGFRHHEKNGGVVLFPPGGGCGGSSMLLDRERPQPAPCTVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTQKSDYLELRAKLQTKPDYLEVLEKTTYRF", "length": 978, "header": "tr|F1SH46-1|F1SH46_PIG Isoform 1 of SLIT and NTRK like family member 3 OS=Sus scrofa OX=9823 GN=SLITRK3 PE=3 SV=2 CANONICAL=F1SH46-1" }, "locus": { "chromosome": "13", "start_pos": 104455190, "end_pos": 104452257, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083284.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083284.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067647.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067647.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 637, "start_aa": "Thr", "end_pos": 637, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr637", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504067", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504067", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IMU6-1", "protein_name": "SLIT and NTRK-like protein 3", "gene_name": "Slitrk3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MMKLSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSKGFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDVFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPVLPTNLFKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIKKTELCPLLSDSEVEASLGIPHLSSSKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQWIETISSVSVVGDVLCRTPENLTHRDVRTIELEVLCPEMLHIAPPGPSPPQPGDYHPNGGPTNASPYEFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQCHRLFEDSGGNGGGSGGGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAASATQETGAAERGCPGTQPPGMGEGLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSNSQLNTIVTVNHHHPHPHHSTIGGVSGVGGGTGADLAGFRHHEKNGGVVLFPPGGGCGGGSMLLDRERPQPAPCTVGFVDCLYGTVPKLKELHVHPPGMHYPDLQQDARLKETLLFSAGKGFTDHQTPKSDYLDLRAKLQTKPDYLEVLEKTAYRF", "length": 980 }, "evidence": [ { "id": "F1SH46", "url": "https://omabrowser.org/oma/group/F1SH46/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0X2S4-1", "protein_name": "SLIT and NTRK like family member 3", "gene_name": "LOC107054133", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMKPSSAETLHRGRMWWIILLSTIALAWTTPIPLIEDSEELDEPCFDPCYCEVKESLFHIHCDNKGFINISQITESWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLRVLKRLYLHENKLDIFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPMLPTNLFKSVSLTHLDLRGNRLKVLSYRGMLDHIGRSLMEIQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIKRSKLCPMLSDSEVEASLGIPQLSSSKENAWPTKPSSMLSSFHFTASSVEYKTSNKQPKPTKQPRAPRPPPTPRGLYPGPNQPPVAAYQTRPPIPIICPTGCSCSLHINDLGLTVNCKERGFHNISELLPRPLNAKKLYLSGNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLYLNGNDIERLTPGMFRGLQSLHYLYFEYNLIREIQPAAFSLMPNLKLLFLNDNLLRTLPTDAFAGTSLARLNLRNNHFLALPVAGVLEHLHAIVQIDLKLNPWDCTCELVPLKQWLEALSSVSVVGEVLCASPERLARRDLRALELAALCPAALRPAAAAAASPPAAAAPPPPAATGAAAYELPPPGAAVPLSVLILSLLVLFFSAVLVAAGLFAFVLRRRRRKLPFRGPRAEAADLGGVPLRCPRLCEEGGGGGGGGGGGGGGGERSPEKAPPAGHVYDYIPHPVTQMCNNPIYKPREEEEEAAGGGGGGGVEAAELLRGGGERFSHAAAAGAAQEPGTNYRTLLEKEQEWSLAVSSSQLNTIVAVHPQHPAGGGLAVGPGAPGGAAAGGCGGGGGGGGTPRDRERPPCAVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFAAGKGFSDHQTPTSEYLELRAKLQTKPDYLEVLEKTTYRF", "length": 954 }, "evidence": [ { "id": "F1SH46", "url": "https://omabrowser.org/oma/group/F1SH46/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A062-1", "protein_name": "SLIT and NTRK-like family, member 3", "gene_name": "Slitrk3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKPTITEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSKGFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDVFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPVLPTNLFKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIKKTELCPLLSDSEVEASLGIPHLSSSKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQWIETISSVSVVGDVLCRTPENLTHRDVRTIELEVLCPEMLHIAQPGPSPPQSGDYHPNGGPTSASPYDFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQCHRLFEDSGGSGGGSGSGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAASAAQDTGATDRGGPGTQPPGMGEVLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSNSQLNTIVTVNHHHPHPHHSAVGGVSGVGGGTGGDLAGFRHHEKNGGVVLFPPGGGCGGGSLLLERERPQPAPCTVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTPKSDYLDLRAKLQTKPDYLEVLEKTAYRF", "length": 979 }, "evidence": [ { "id": "F1SH46", "url": "https://omabrowser.org/oma/group/F1SH46/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N513-1", "protein_name": "SLIT and NTRK like family member 3", "gene_name": "SLITRK3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMKPSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSKGFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDIFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPMLPTNLFKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIRKTELCPLLSDSEVEASLGIPHLSSNKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQWIETISSVSVVGDVLCRSPENLTHRDVRTIELEVLCPEMLHIAPAGASPAQPGDAHLAGGPTSASPYEFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQCHRLFEDGGGGGGGNGGGGRPTISSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVVVSSGPEAGGAERGAPVTQPPGMGEVLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSSSQLNTIVTMNHHHPHPHHSAVGGVSGVVAGTGGDLVGFRHHEKNGGVVLFPPGGGCGGSSMLLDRERPQPAPCTVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTQKSDYLELRAKLQTKPDYLEVLEKTTYRF", "length": 980 }, "evidence": [ { "id": "F1SH46", "url": "https://omabrowser.org/oma/group/F1SH46/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O94933-1", "protein_name": "SLIT and NTRK-like protein 3", "gene_name": "SLITRK3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKPSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSKGFTNISQITEFWSRPFKLYLQRNSMRKLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDVFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPMLPTNLFKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIRKTELCPLLSDSEVEASLGIPHSSSSKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQWIETISSVSVVGDVLCRSPENLTHRDVRTIELEVLCPEMLHVAPAGESPAQPGDSHLIGAPTSASPYEFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQCHRLFEDGGGGGGGSGGGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAVSSAQEAGSAERGGPGTQPPGMGEALLGSEQFAETPKENHSNYRTLLEKEKEWALAVSSSQLNTIVTVNHHHPHHPAVGGVSGVVGGTGGDLAGFRHHEKNGGVVLFPPGGGCGSGSMLLDRERPQPAPCTVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTQKSDYLELRAKLQTKPDYLEVLEKTTYRF", "length": 977 }, "evidence": [ { "id": "F1SH46", "url": "https://omabrowser.org/oma/group/F1SH46/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q810B9-1", "protein_name": "SLIT and NTRK-like protein 3", "gene_name": "Slitrk3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMKPSIAEMLHRGRMLWIILLSTIALGWTTPIPLIEDSEEIDEPCFDPCYCEVKESLFHIHCDSKGFTNISQITEFWSRPFKLYLQRNSMRRLYTNSFLHLNNAVSINLGNNALQDIQTGAFNGLKILKRLYLHENKLDVFRNDTFLGLESLEYLQADYNVIKRIESGAFRNLSKLRVLILNDNLIPVLPTNLFKAVSLTHLDLRGNRLKVLFYRGMLDHIGRSLMELQLEENPWNCTCEIVQLKSWLERIPYTALVGDITCETPFHFHGKDLREIKKTELCPLLSDSEVEASLGIPHLSSSKENAWPTKPSSMLSSVHFTASSVEYKSSNKQPKPTKQPRTPRPPSTSQALYPGPNQPPIAPYQTRPPIPIICPTGCTCNLHINDLGLTVNCKERGFNNISELLPRPLNAKKLYLSSNLIQKIYRSDFWNFSSLDLLHLGNNRISYVQDGAFINLPNLKSLFLNGNDIEKLTPGMFRGLQSLHYLYFEFNVIREIQPAAFSLMPNLKLLFLNNNLLRTLPTDAFAGTSLARLNLRKNYFLYLPVAGVLEHLNAIVQIDLNENPWDCTCDLVPFKQWIETISSVSVVGDVLCRTPENLTHRDVRTIELEVLCPEMLHIAQPGPSPPQPGDYHPNGGPTSASPYEFSPPGGPVPLSVLILSLLVLFFSAVFVAAGLFAYVLRRRRKKLPFRSKRQEGVDLTGIQMQCHRLFEDSGGNSGGSGGGGRPTLSSPEKAPPVGHVYEYIPHPVTQMCNNPIYKPREEEEVAASAAQDTGATDRGGPGTQPTGMAEVLLGSEQFAETPKENHSNYRTLLEKEKEWALAVSNSQLNTIVTVNHHHPHPHHSAVGGVSGVGGGTGGDLAGFRHHEKNGGVVLFPPGGGCGGGSLLLDRERPQPAPCTVGFVDCLYGTVPKLKELHVHPPGMQYPDLQQDARLKETLLFSAGKGFTDHQTPKSDYLDLRAKLQTKPDYLEVLEKTAYRF", "length": 980 }, "evidence": [ { "id": "F1SH46", "url": "https://omabrowser.org/oma/group/F1SH46/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "GABA-ergic synapse", "id": "GO:0098982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098982", "evidence": [ { "database": "UniProtKB", "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ], "pmid": "" }, { "name": "postsynaptic density membrane", "id": "GO:0098839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098839", "evidence": [ { "database": "UniProtKB", "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "axonogenesis", "id": "GO:0007409", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007409", "evidence": [ { "database": "UniProtKB", "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ], "pmid": "" }, { "name": "positive regulation of synapse assembly", "id": "GO:0051965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051965", "evidence": [ { "database": "UniProtKB", "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ], "pmid": "" }, { "name": "synaptic membrane adhesion", "id": "GO:0099560", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099560", "evidence": [ { "database": "UniProtKB", "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ], "pmid": "" }, { "name": "regulation of presynapse assembly", "id": "GO:1905606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905606", "evidence": [ { "database": "UniProtKB", "id": "F1SH46", "url": "https://www.uniprot.org/uniprotkb/F1SH46" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 142, "end_pos": 144, "annotation": "n_glycosylation_sequon" }, { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 430, "end_pos": 432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 596, "end_pos": 598, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" }, { "start_pos": 804, "end_pos": 806, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SH46", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH46" }, { "id": "SM00082", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00082" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRCT", "eco_id": "ECO_0000259", "start_pos": 232, "end_pos": 282, "start_aa": "Asn", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 637 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 142, "end_pos": 144 }, { "start_pos": 171, "end_pos": 173 }, { "start_pos": 235, "end_pos": 237 }, { "start_pos": 399, "end_pos": 401 }, { "start_pos": 430, "end_pos": 432 }, { "start_pos": 596, "end_pos": 598 }, { "start_pos": 68, "end_pos": 70 }, { "start_pos": 804, "end_pos": 806 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SH50-1", "uniprot_ac": "F1SH50", "uniprot_id": "F1SH50_PIG", "mass": { "chemical_mass": 47168.0, "monoisotopic_mass": 47168.0 }, "refseq": { "ac": "XP_005670011", "name": "tripartite motif-containing protein 59", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670011" }, "gene_names": [ { "name": "TRIM59", "type": "recommended", "evidence": [ { "id": "F1SH50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH50" } ] }, { "name": "TRIM59", "type": "synonym", "evidence": [ { "id": "XP_005670011", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670011" } ] } ], "protein_names": [ { "name": "Tripartite motif-containing protein 59", "type": "recommended", "evidence": [ { "id": "F1SH50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH50/entry#names_and_taxonomy" } ] }, { "name": "tripartite motif-containing protein 59", "type": "synonym", "evidence": [ { "id": "XP_005670011", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670011" } ] } ], "function": [ { "annotation": "E3 ubiquitin ligase involved in different processes such as development and immune response. Serves as a negative regulator for innate immune signaling pathways by suppressing RLR-induced activation of IRF3/7 and NF-kappa-B via interaction with adapter ECSIT. Regulates autophagy through modulating both the transcription and the ubiquitination of BECN1. On the one hand, regulates the transcription of BECN1 through negatively modulating the NF-kappa-B pathway. On the other hand, regulates TRAF6-mediated 'Lys-63'-linked ubiquitination of BECN1, thus affecting the formation of the BECN1-PIK3C3 complex. In addition, mediates 'Lys-48'-linked ubiquitination of TRAF6 and thereby promotes TRAF6 proteasomal degradation. Also acts as a critical regulator for early embryo development from blastocyst stage to gastrula through modulating F-actin assembly and WASH1 'Lys-63'-linked ubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50#function" }, { "database": "UniProtKB", "id": "ARBA00055104", "url": "https://www.uniprot.org/uniprotkb/ARBA00055104#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRIM59", "url": "https://www.uniprot.org/uniprotkb/F1SH50", "locus": { "chromosome": "13", "start_pos": 100118826, "end_pos": 100132967, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011732", "url": "https://www.ensembl.org/id/ENSSSCG00000011732" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011732", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011732", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16763", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16763", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19790", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19790", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152755", "url": "https://www.ncbi.nlm.nih.gov/gene/100152755", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152755", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152755", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QEYTPHI", "url": "https://omabrowser.org/oma/group/QEYTPHI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SH50", "url": "https://www.orthodb.org/?gene=F1SH50", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24098", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24098", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24098:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24098:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005670011", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670011", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH50-1", "url": "https://www.uniprot.org/uniprotkb/F1SH50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHNFEDELTCPICYSIFEDPRVLPCSHTFCRNCLEDILQASGNFYIWRPLRIPLKCPNCRSIIEIAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHHGHPIDDLQSAYIKEKDTPQKLLDQLTDTHWTDLTHLIEKLEEQRSHLEKMVQGDKEVVLQYFKELSDTLEQKKKNFLTALCDVDNLINQECTPQIERMKEMREQQLELMTMTASLQEESPLKFLEKVDDIRQRVQLLKQRPLPEVQPVEIYPRVSQVFKEDWSRTEIGQIKELLIPEMKISSKRMPCSWPDKDVKEVEFFKILNLVIVTLISVILMLTLFFNQHVITFLNEVTSTCFAEVSLSVYQSLSNNLHDLKNILCHTLYLLKEFMSKIISH", "length": 403, "header": "tr|F1SH50-1|F1SH50_PIG Isoform 1 of Tripartite motif-containing protein 59 OS=Sus scrofa OX=9823 GN=TRIM59 PE=3 SV=1 CANONICAL=F1SH50-1" }, "isoforms": [ { "isoform_ac": "F1SH50-1", "url": "https://www.uniprot.org/uniprotkb/F1SH50/entry#F1SH50-1", "sequence": { "sequence": "MHNFEDELTCPICYSIFEDPRVLPCSHTFCRNCLEDILQASGNFYIWRPLRIPLKCPNCRSIIEIAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHHGHPIDDLQSAYIKEKDTPQKLLDQLTDTHWTDLTHLIEKLEEQRSHLEKMVQGDKEVVLQYFKELSDTLEQKKKNFLTALCDVDNLINQECTPQIERMKEMREQQLELMTMTASLQEESPLKFLEKVDDIRQRVQLLKQRPLPEVQPVEIYPRVSQVFKEDWSRTEIGQIKELLIPEMKISSKRMPCSWPDKDVKEVEFFKILNLVIVTLISVILMLTLFFNQHVITFLNEVTSTCFAEVSLSVYQSLSNNLHDLKNILCHTLYLLKEFMSKIISH", "length": 403, "header": "tr|F1SH50-1|F1SH50_PIG Isoform 1 of Tripartite motif-containing protein 59 OS=Sus scrofa OX=9823 GN=TRIM59 PE=3 SV=1 CANONICAL=F1SH50-1" }, "locus": { "chromosome": "13", "start_pos": 100122382, "end_pos": 100121174, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086841.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086841.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067479.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067479.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152755", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152755", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9PIB6-1", "protein_name": "Tripartite motif-containing protein 59 isoform X1", "gene_name": "trim59", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSDYHILQAVKRLNNCCWRKNCLKLVMDSLEEDLTCSVCYALFTDPRVLPCSHTFCKSCLESVLQVSVNFSIWRPLRLPLKCPNCRSVVELPTNGLDALPVNVCLRAIVEKYQRESRPRSPSCPEHPGQPLNVYCVQDRKLICGFCLTIGQHQGHKIDDLQTAYVKERTDQPTFIQSLRGERWEEMNRLAEQLQMEKTRSEALVQKDREVALVFFQGLELTLAQKKEQFMQALERANVLLNQAYEPLMEQLKGLQEEHSQLQILISSMEEDQESPLEYLEKVHQLRERINTLNCTPMPTVPSLQMSPRAERFIEKHWTDVTLRDLRDGPLPEISWHSESCSTSRAQVSDQTRCWRICVCLCVIMLLLLFCLNRGTHWLSALRQAGENALSGLSQPLRDLGALFCCVLQNTGSKLQAFISTVGEHTHQRLLRFLKELHWC", "length": 440 }, "evidence": [ { "id": "F1SH50", "url": "https://omabrowser.org/oma/group/F1SH50/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B5DF13-1", "protein_name": "Tripartite motif-containing protein 59", "gene_name": "Trim59", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHNFEDELTCPICYSIFDDPRVLPCSHTFCRNCLENVLQASGNFYIWRPLRIPLKCPNCRSIIEIASTGIESLPVNFALRAIIEKYQQEDHPDVVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHHGHPIDDLQSAYLKEKDTPQKLFKQLTDTHWTDITRLIEKLEEQKCHSEKIVQSDKEVVLQYFKELTDTLEQKKKFFLAALCDVGKMINQEYTPQIERMKEIREQQLELMTMTTSLQDESPLKFLEKIDDVRQRVQMLKQRPLPEVQPVEIYPRVSNVLKEEWSRTEIGRIKKAVIPEMRISSKRMPCSWPDKDEKEMECFKILNIAIVSLISVILMLILLFNHHIITFLNEITSICFSEVFLSVYQSLSKNLYDLKNTVCYTLYLLKEFMWKIVSC", "length": 403 }, "evidence": [ { "id": "F1SH50", "url": "https://omabrowser.org/oma/group/F1SH50/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3IAU3-1", "protein_name": "Tripartite motif-containing protein 59", "gene_name": "Trim59", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENVLQASGNFYIWRPLRIPLKCPNCRSIIEIASTGIESLPVNFALRAIIEKYQQEDHPDVVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHHGHPIDDLQSAYLKEKDTPQKLFKQLTDTHWTDITRLIEKLEEQKCHSEKMLQGDKEVVLQYFKELTDALEQKKKKFLAALCDVGKLINQEYTPQIERVKEIREQQLELMTVTTSLQDESPLKFLEKIDDVRQRVQMLKRRPLPEAKPVEIYPRVSKVLKEEWSRTEIGHIKKAVIPEMRISSRRMPCSWPDKDEKEIEFFKILNIVIVSLISVILMLILLFNQHIITFLNEITSICFSEVSLSVYQSLSNNLCDLKNMVCYPLYLLKEFMWKIVSR", "length": 403 }, "evidence": [ { "id": "F1SH50", "url": "https://omabrowser.org/oma/group/F1SH50/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5ZMD4-1", "protein_name": "Tripartite motif-containing protein 59", "gene_name": "TRIM59", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MHQFEEELTCSICYSLFEDPRVLPCSHTFCRSCLEGVIQLSSNFSIWRPLRVPLKCPNCRSIVEIPASGTESLPINFALKAIIEKYRQEDHSDVATCSEHYRQPLNVYCLLDKKLVCGHCLTIGKHNGHPIDDLHSAYLKEKESSGKILEQLTDKHWSDVCLLIEKLKEQKAQCESIVQDDKKVVVQYFKKLSETLEHKKQVLLAALDEINRQILEEYEPHIEKLKKIREEQLELMSLNTSIQKEESPLVFLEKVDNVHQRIKALKEKELPDVKPVEVYPRVGHLLKDVWSKTEIGQINKILTPKIKLVPKRKLHSKNSEKERGKPEELLQAANPLSVTFIFTVIIAIAVLSFHKPISSVVIESIPTHISDFFGFLYQDFCTCMQNTVDVVCHKLNSLAEFLGGIVPF", "length": 408 }, "evidence": [ { "id": "F1SH50", "url": "https://omabrowser.org/oma/group/F1SH50/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8IWR1-1", "protein_name": "Tripartite motif-containing protein 59", "gene_name": "TRIM59", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCRSITEIAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEKMIQGDKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELMALTISLQEESPLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIGQIKNVLIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITFLSEITLIWFSEASLSVYQSLSNSLHKVKNILCHIFYLLKEFVWKIVSH", "length": 403 }, "evidence": [ { "id": "F1SH50", "url": "https://omabrowser.org/oma/group/F1SH50/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q922Y2-1", "protein_name": "Tripartite motif-containing protein 59", "gene_name": "Trim59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENVLQASGNFYIWRPLRIPLKCPNCRSIIEIASTGIESLPVNFALRAIIEKYQQEDHPDVVTCPEHYRQPLNVYCLLDKKLVCGHCLTIGQHHGHPIDDLQSAYLKEKDTPQKLLKQLTDTHWTDITRLIEKLEEQKCHSEKIVQGDKEVVLQYFKELIDTLEQKKKYFLAALCDVGKMINQEYTPQIQGMKEIREQQLELMTITTSLQDESPLKFLEKIDEVRQRVQMLKQRPLPEVQPVEIYPRVSNVLKEEWSRIEIGRIKKAVIPEMRVSSKRTPCSWSDNDEKEMELFKILNIAIVSLISVILMLILLFNHHIITFLNEITSICFSEVFLSVYQSLSKNLYDLNNTVCYTLYLLKEFMWKIVSR", "length": 403 }, "evidence": [ { "id": "F1SH50", "url": "https://omabrowser.org/oma/group/F1SH50/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50" } ], "pmid": "" }, { "name": "negative regulation of canonical NF-kappaB signal transduction", "id": "GO:0043124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043124", "evidence": [ { "database": "UniProtKB", "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50" } ], "pmid": "" }, { "name": "host-mediated suppression of symbiont invasion", "id": "GO:0046597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046597", "evidence": [ { "database": "UniProtKB", "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SH50", "url": "https://www.uniprot.org/uniprotkb/F1SH50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SH50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH50" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 134, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SH50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH50" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 60, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SH86-1", "uniprot_ac": "F1SH86", "uniprot_id": "F1SH86_PIG", "mass": { "chemical_mass": 63037.0, "monoisotopic_mass": 63037.0 }, "refseq": { "ac": "XP_020937381", "name": "POU domain, class 6, transcription factor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937381" }, "gene_names": [ { "name": "POU6F1", "type": "recommended", "evidence": [ { "id": "F1SH86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH86" } ] }, { "name": "POU6F1", "type": "synonym", "evidence": [ { "id": "XP_020937381", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937381" } ] } ], "protein_names": [ { "name": "POU domain protein", "type": "recommended", "evidence": [ { "id": "F1SH86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH86/entry#names_and_taxonomy" } ] }, { "name": "POU domain, class 6, transcription factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020937381", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937381" } ] } ], "function": [ { "annotation": "Transcription factor that binds preferentially to a variant of the octamer motif (5'-ATGATAAT-3').", "evidence": [ { "database": "UniProtKB", "id": "F1SH86", "url": "https://www.uniprot.org/uniprotkb/F1SH86#function" }, { "database": "UniProtKB", "id": "ARBA00053673", "url": "https://www.uniprot.org/uniprotkb/ARBA00053673#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SH86", "url": "https://www.uniprot.org/uniprotkb/F1SH86" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POU6F1", "url": "https://www.uniprot.org/uniprotkb/F1SH86", "locus": {} } ], "crossref": [ { "id": "F1SH86", "url": "https://alphafold.ebi.ac.uk/entry/F1SH86", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000220", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000220", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102158970", "url": "https://www.ncbi.nlm.nih.gov/gene/102158970", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010982", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010982", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013847", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013847", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050255", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050255", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102158970", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158970", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SH86", "url": "https://www.orthodb.org/?gene=F1SH86", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11636", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11636", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11636:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11636:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00157", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00157", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020937381", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937381", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SH86", "url": "https://www.uniprot.org/uniprotkb/F1SH86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SH86-1", "url": "https://www.uniprot.org/uniprotkb/F1SH86-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPGAGPDSSLTVNEQVIVMSGHETIRVLEVGVDAPIPAEEEGKALEGVAAEGSLSGGPAQAGEAAGGDAGPDTPDSSAEATVKSLPGMPPSPAPAVATFSQAPCQPQASQTLTPLAVQAAPQVLTQENLATVLTGVMVPAGAVTQPLLIPISIAGQVAGQQGLAVWTIPTATVAALPGLTAASPTGGIFKPPLAGLQAAAVLNAAALPAPVQAAPPAQASSPAQPRPPAQPQTLLQTQPLLQTAPAILPQPTAAAAAATAPTPKPVDTPPQITVQPAGFAFSPGIISAASLGGQTQILGSLTTTPVIANAIPSVPGISSQILTNAQGQVIGALPWVVNSASVAAPAPAPSLQVQAVTPQLLLNAQGQVIATLASSTLTPTVAVRKPSTPESPAKSEVQPIQPTPAVSQPAVVIASPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNVFQIP", "length": 615, "header": "tr|F1SH86-1|F1SH86_PIG Isoform 1 of POU domain protein OS=Sus scrofa OX=9823 GN=POU6F1 PE=3 SV=4 CANONICAL=F1SH86-1" }, "isoforms": [ { "isoform_ac": "F1SH86-1", "url": "https://www.uniprot.org/uniprotkb/F1SH86/entry#F1SH86-1", "sequence": { "sequence": "MDPGAGPDSSLTVNEQVIVMSGHETIRVLEVGVDAPIPAEEEGKALEGVAAEGSLSGGPAQAGEAAGGDAGPDTPDSSAEATVKSLPGMPPSPAPAVATFSQAPCQPQASQTLTPLAVQAAPQVLTQENLATVLTGVMVPAGAVTQPLLIPISIAGQVAGQQGLAVWTIPTATVAALPGLTAASPTGGIFKPPLAGLQAAAVLNAAALPAPVQAAPPAQASSPAQPRPPAQPQTLLQTQPLLQTAPAILPQPTAAAAAATAPTPKPVDTPPQITVQPAGFAFSPGIISAASLGGQTQILGSLTTTPVIANAIPSVPGISSQILTNAQGQVIGALPWVVNSASVAAPAPAPSLQVQAVTPQLLLNAQGQVIATLASSTLTPTVAVRKPSTPESPAKSEVQPIQPTPAVSQPAVVIASPAPAAKPSASAPIPITCSETPTVSQLVSKPHTPSLDEDGINLEEIREFAKNFKIRRLSLGLTQTQVGQALTATEGPAYSQSAICRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEIAKELNYDREVVRVWFCNRRQTLKNTSKLNVFQIP", "length": 615, "header": "tr|F1SH86-1|F1SH86_PIG Isoform 1 of POU domain protein OS=Sus scrofa OX=9823 GN=POU6F1 PE=3 SV=4 CANONICAL=F1SH86-1" }, "locus": { "chromosome": "AEMK02000258.1", "start_pos": 214970, "end_pos": 199260, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000236.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000236.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000232.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000232.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 253, "start_aa": "Thr", "end_pos": 253, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr253", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 358, "start_aa": "Thr", "end_pos": 358, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr358", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 404, "start_aa": "Thr", "end_pos": 404, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr404", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SH86", "url": "https://www.uniprot.org/uniprotkb/F1SH86" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102158970", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102158970", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SH86", "url": "https://www.uniprot.org/uniprotkb/F1SH86" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SH86", "url": "https://www.uniprot.org/uniprotkb/F1SH86" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SH86", "url": "https://www.uniprot.org/uniprotkb/F1SH86" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SH86", "url": "https://www.uniprot.org/uniprotkb/F1SH86" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SH86", "url": "https://www.uniprot.org/uniprotkb/F1SH86" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 605, "end_pos": 607, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SH86-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 615, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SH86-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SH86" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SH86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH86" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 546, "end_pos": 606, "start_aa": "Ser", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SH86", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SH86" }, { "id": "PS51179", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51179" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "POU-specific", "eco_id": "ECO_0000259", "start_pos": 453, "end_pos": 527, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 253, 358, 404 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 605, "end_pos": 607 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHB8-1", "uniprot_ac": "F1SHB8", "uniprot_id": "F1SHB8_PIG", "mass": { "chemical_mass": 24998.0, "monoisotopic_mass": 24998.0 }, "refseq": { "ac": "XP_003126157", "name": "complement C1q-like protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126157" }, "gene_names": [ { "name": "C1QL4", "type": "recommended", "evidence": [ { "id": "F1SHB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" } ] }, { "name": "C1QL4", "type": "synonym", "evidence": [ { "id": "XP_003126157", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126157" } ] } ], "protein_names": [ { "name": "Complement C1q like 4", "type": "synonym", "evidence": [ { "id": "F1SHB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHB8/entry#names_and_taxonomy" } ] }, { "name": "complement C1q-like protein 4", "type": "synonym", "evidence": [ { "id": "XP_003126157", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126157" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHB8", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C1QL4", "url": "https://www.uniprot.org/uniprotkb/F1SHB8", "locus": { "chromosome": "5", "start_pos": 15308210, "end_pos": 15311915, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000197", "url": "https://www.ensembl.org/id/ENSSSCG00000000197" } ] } } ], "crossref": [ { "id": "F1SHB8", "url": "https://alphafold.ebi.ac.uk/entry/F1SHB8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000197", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000197", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512604", "url": "https://www.ncbi.nlm.nih.gov/gene/100512604", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050822", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050822", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512604", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512604", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPTHYEM", "url": "https://omabrowser.org/oma/group/GPTHYEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHB8", "url": "https://www.orthodb.org/?gene=F1SHB8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22923", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22923", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22923:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22923:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00386", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00386", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126157", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126157", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHB8", "url": "https://www.uniprot.org/uniprotkb/F1SHB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHB8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHB8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLLLLVAIPLLVHSSRGPAHYEMLGRCRMVCDPHGQRGPGPDGAPASVPPFPPGAKGEMGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPGGVAPPAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYPD", "length": 238, "header": "tr|F1SHB8-1|F1SHB8_PIG Isoform 1 of Complement C1q like 4 OS=Sus scrofa OX=9823 GN=C1QL4 PE=4 SV=1 CANONICAL=F1SHB8-1" }, "isoforms": [ { "isoform_ac": "F1SHB8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHB8/entry#F1SHB8-1", "sequence": { "sequence": "MVLLLLVAIPLLVHSSRGPAHYEMLGRCRMVCDPHGQRGPGPDGAPASVPPFPPGAKGEMGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPGGVAPPAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYPD", "length": 238, "header": "tr|F1SHB8-1|F1SHB8_PIG Isoform 1 of Complement C1q like 4 OS=Sus scrofa OX=9823 GN=C1QL4 PE=4 SV=1 CANONICAL=F1SHB8-1" }, "locus": { "chromosome": "5", "start_pos": 15311716, "end_pos": 15308986, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000210.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000210.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000208.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000208.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHB8", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512604", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512604", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7IB05-1", "protein_name": "Complement C1q-like protein 4", "gene_name": "C1ql4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVLLLLVAIPLLVHSSRGPTHYEMLGRCRMVCDPHAPRGQGTDGAPTSVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPGGAVPPAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYPD", "length": 238 }, "evidence": [ { "id": "F1SHB8", "url": "https://omabrowser.org/oma/group/F1SHB8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZMN4-1", "protein_name": "Complement C1q like 4", "gene_name": "C1ql4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVLLLLVAIPLLVHSSRGPTHYEMLGRCRMVCDPHASRGQGSDGAPSSVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPGGAAPPAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYPD", "length": 238 }, "evidence": [ { "id": "F1SHB8", "url": "https://omabrowser.org/oma/group/F1SHB8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MFA0-1", "protein_name": "Complement C1q like 4", "gene_name": "C1QL4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVLLLLVAIPLLVHSSQGPAHYEMLGRCRMVCDPHGPRGPGPDGAPASVPPFPPGAKGEAGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPGGVAPPAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYPD", "length": 238 }, "evidence": [ { "id": "F1SHB8", "url": "https://omabrowser.org/oma/group/F1SHB8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4ZJM9-1", "protein_name": "Complement C1q-like protein 4", "gene_name": "C1ql4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLLLLVAIPLLVHSSRGPTHYEMLGRCRMVCDPHASRGQGPDGAPASVPSLPPGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPGGAAPPAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYPD", "length": 238 }, "evidence": [ { "id": "F1SHB8", "url": "https://omabrowser.org/oma/group/F1SHB8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86Z23-1", "protein_name": "Complement C1q-like protein 4", "gene_name": "C1QL4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVLLLLVAIPLLVHSSRGPAHYEMLGRCRMVCDPHGPRGPGPDGAPASVPPFPPGAKGEVGRRGKAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPGGVAPAAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVGNAYEAASGKFTCPMPGVYFFAYHVLMRGGDGTSMWADLMKNGQVRASAIAQDADQNYDYASNSVILHLDVGDEVFIKLDGGKVHGGNTNKYSTFSGFIIYPD", "length": 238 }, "evidence": [ { "id": "F1SHB8", "url": "https://omabrowser.org/oma/group/F1SHB8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SHB8", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SHB8", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" } ], "pmid": "" }, { "name": "synaptic cleft", "id": "GO:0043083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043083", "evidence": [ { "database": "UniProtKB", "id": "F1SHB8", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SHB8", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "maintenance of synapse structure", "id": "GO:0099558", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099558", "evidence": [ { "database": "UniProtKB", "id": "F1SHB8", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" } ], "pmid": "" }, { "name": "trans-synaptic signaling, modulating synaptic transmission", "id": "GO:0099550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099550", "evidence": [ { "database": "UniProtKB", "id": "F1SHB8", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHB8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 238, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHB8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHB8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHB8" }, { "id": "PS50871", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50871" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C1q", "eco_id": "ECO_0000259", "start_pos": 105, "end_pos": 238, "start_aa": "Gly", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHC0-1", "uniprot_ac": "F1SHC0", "uniprot_id": "F1SHC0_PIG", "mass": { "chemical_mass": 53594.0, "monoisotopic_mass": 53594.0 }, "refseq": { "ac": "XP_003126153", "name": "peripherin isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126153" }, "gene_names": [ { "name": "PRPH", "type": "recommended", "evidence": [ { "id": "F1SHC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" } ] }, { "name": "PRPH", "type": "synonym", "evidence": [ { "id": "XP_003126153", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126153" } ] } ], "protein_names": [ { "name": "Peripherin", "type": "synonym", "evidence": [ { "id": "F1SHC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC0/entry#names_and_taxonomy" } ] }, { "name": "peripherin isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003126153", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126153" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHC0", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRPH", "url": "https://www.uniprot.org/uniprotkb/F1SHC0", "locus": { "chromosome": "5", "start_pos": 15288798, "end_pos": 15285294, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000195", "url": "https://www.ensembl.org/id/ENSSSCG00000000195" } ] } } ], "crossref": [ { "id": "F1SHC0", "url": "https://alphafold.ebi.ac.uk/entry/F1SHC0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000195", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000195", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152434", "url": "https://www.ncbi.nlm.nih.gov/gene/100152434", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050405", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050405", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152434", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152434", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MSHHPAG", "url": "https://omabrowser.org/oma/group/MSHHPAG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHC0", "url": "https://www.orthodb.org/?gene=F1SHC0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45652", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45652", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45652:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45652:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04732", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04732", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126153", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126153", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHC0", "url": "https://www.uniprot.org/uniprotkb/F1SHC0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHC0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHC0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHPSGLRSSVSSTSYRRTFGPPPSLSPGAFSYSSSSRFSSSRLLGSASPGSSVRLGSFRGPRAGAGSLLRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQQFEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKTTVPEVEPPQEIHSRKMVLIKTIETRDGEVVTESQKEQRSELDKSSTHSY", "length": 469, "header": "tr|F1SHC0-1|F1SHC0_PIG Isoform 1 of Peripherin OS=Sus scrofa OX=9823 GN=PRPH PE=1 SV=3 CANONICAL=F1SHC0-1" }, "isoforms": [ { "isoform_ac": "F1SHC0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHC0/entry#F1SHC0-1", "sequence": { "sequence": "MSHPSGLRSSVSSTSYRRTFGPPPSLSPGAFSYSSSSRFSSSRLLGSASPGSSVRLGSFRGPRAGAGSLLRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQMSVESQQVQQFEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAAKLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKTTVPEVEPPQEIHSRKMVLIKTIETRDGEVVTESQKEQRSELDKSSTHSY", "length": 469, "header": "tr|F1SHC0-1|F1SHC0_PIG Isoform 1 of Peripherin OS=Sus scrofa OX=9823 GN=PRPH PE=1 SV=3 CANONICAL=F1SHC0-1" }, "locus": { "chromosome": "5", "start_pos": 15288460, "end_pos": 15285350, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000208.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000208.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000206.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000206.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHC0", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152434", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152434", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A6QQJ3-1", "protein_name": "Peripherin", "gene_name": "PRPH", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSHPSGLRSSVSSTSYRRTFGPPPSLSPGAFSYSSSSRFSSSRLLGSASPGSSVRLGSFRGPRAGTGALLRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELNQARGQEPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQLSVESQQVQHVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSIKTTVPEVEPPQETHSRKMVLIRTIETRDGEQVVTESQKEQHSELDKSPQSY", "length": 469 }, "evidence": [ { "id": "F1SHC0", "url": "https://omabrowser.org/oma/group/F1SHC0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3IJR3-1", "protein_name": "Peripherin isoform X1", "gene_name": "Prph", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSSATMSHHSSGLRSNISSTSYRRTFGPPPSLSPGAYSYSSSTRFSSSRLLGSASPSSSARLGSFRAPRAGALRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELRDLRRELELLGRERDRVQVERDALAEDLAALKQRLEEESRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSMESQQVQQVEVEATVKPELTAALRDIRMQYENIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSLKTTVPEVEPPQDSHSRKMVLIRTIETRDGEQVVTESQKEQHSELDKSSIHSY", "length": 474 }, "evidence": [ { "id": "F1SHC0", "url": "https://omabrowser.org/oma/group/F1SHC0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P15331-1", "protein_name": "Peripherin", "gene_name": "Prph", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPSSASMSHHHSSGLRSSISSTSYRRTFGPPPSLSPGAFSYSSSSRFSSSRLLGSGSPSSSARLGSFRAPRAGALRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEATVKPELTAALRDIRAQYENIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLSLKTTVPEMEPLQDSHSKKMVLIRTIETRDGEKVVTESQKEQHSDLDKSSIHSY", "length": 475 }, "evidence": [ { "id": "F1SHC0", "url": "https://omabrowser.org/oma/group/F1SHC0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P41219-1", "protein_name": "Peripherin", "gene_name": "PRPH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSHHPSGLRAGFSSTSYRRTFGPPPSLSPGAFSYSSSSRFSSSRLLGSASPSSSVRLGSFRSPRAGAGALLRLPSERLDFSMAEALNQEFLATRSNEKQELQELNDRFANFIEKVRFLEQQNAALRGELSQARGQEPARADQLCQQELRELRRELELLGRERDRVQVERDGLAEDLAALKQRLEEETRKREDAEHNLVLFRKDVDDATLSRLELERKIESLMDEIEFLKKLHEEELRDLQVSVESQQVQQVEVEATVKPELTAALRDIRAQYESIAAKNLQEAEEWYKSKYADLSDAANRNHEALRQAKQEMNESRRQIQSLTCEVDGLRGTNEALLRQLRELEEQFALEAGGYQAGAARLEEELRQLKEEMARHLREYQELLNVKMALDIEIATYRKLLEGEESRISVPVHSFASLNIKTTVPEVEPPQDSHSRKTVLIKTIETRNGEVVTESQKEQRSELDKSSAHSY", "length": 470 }, "evidence": [ { "id": "F1SHC0", "url": "https://omabrowser.org/oma/group/F1SHC0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of cytoskeleton", "id": "GO:0005200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005200", "evidence": [ { "database": "UniProtKB", "id": "F1SHC0", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SHC0", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SHC0", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1SHC0", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" } ], "pmid": "" }, { "name": "type III intermediate filament", "id": "GO:0045098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045098", "evidence": [ { "database": "UniProtKB", "id": "F1SHC0", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "F1SHC0", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHC0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 469, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHC0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHC0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHC0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC0" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 406, "start_aa": "Glu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 312, "end_pos": 314 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHC9-1", "uniprot_ac": "F1SHC9", "uniprot_id": "F1SHC9_PIG", "mass": { "chemical_mass": 78210.0, "monoisotopic_mass": 78210.0 }, "refseq": { "ac": "XP_005672181", "name": "FAST kinase domain-containing protein 2, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672181" }, "gene_names": [ { "name": "FASTKD2", "type": "recommended", "evidence": [ { "id": "F1SHC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ] }, { "name": "FASTKD2", "type": "synonym", "evidence": [ { "id": "XP_005672181", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672181" } ] } ], "protein_names": [ { "name": "FAST kinase domain-containing protein 2, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_005672181", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672181" } ] }, { "name": "FAST kinase domains 2", "type": "synonym", "evidence": [ { "id": "F1SHC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FASTKD2", "url": "https://www.uniprot.org/uniprotkb/F1SHC9", "locus": { "chromosome": "15", "start_pos": 110043116, "end_pos": 110021469, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016134", "url": "https://www.ensembl.org/id/ENSSSCG00000016134" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016134", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016134", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517314", "url": "https://www.ncbi.nlm.nih.gov/gene/100517314", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517314", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517314", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FEIRMDS", "url": "https://omabrowser.org/oma/group/FEIRMDS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHC9", "url": "https://www.orthodb.org/?gene=F1SHC9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21228:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21228:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06743", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06743", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005672181", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672181", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNRTGSFLWNLRQFSSLVPSGRTVRLYPLGFCRRQIVYLNWNQRSLLNNFGNRMQSSIRCLFQNALIFKSGGDDFQTKGISTATVFTVDRPLCSRRLSFDSNHPLAADNGLKKNFQHKASKEDVLTKGTKPARISCSTLSQECNSLSDVLDIFSKAPRFPSSNYFSAMWIVAKRMSSDQKRFEKQLMFNHPVFSQLCEQAMREAKIMHYDDLLFSLHAIVKLGIPQNTLLVQTLLRVVQERINECDEKCLSVLSTVLEAMEPCKNVDVLRAGFRMLVDQQVWKIERVFTLQTVMKCIGKDAPVGLKRKLEMKALKELDQFSVLNSQHMFKVLAAMNHRSIILLNECSKTVTSNIHGCPFKILISILQSCRDLRYFNIDLLKGIADYVTTTFDIWKLKQVLFLLILFESFGFRPVGLMDLFMKKAADESGSLNVKNLVCILYVYSSLNHVYKCQTHRFLEIMATALTGSLHHISSENLLNVVCSFCLLNHFPLALINQLFQKDTISDLLTSGDVEKHVLKLCTVTACLKLDDAPYPKNIDLVLPEPPSTVLCPNAKVAKVLSSLLGEGCFSKSVQLPHNYYIDFEIRMDTNRSQVLPFSEVDVVTSDTDIQRVAILCIPKSAYCLDSTHPKGNLALKMRHLKAMGFRVILVHNWEMEKLDMKDAVMLLKTKIYSTEALAPADKNLQSTC", "length": 689, "header": "tr|F1SHC9-1|F1SHC9_PIG Isoform 1 of FAST kinase domains 2 OS=Sus scrofa OX=9823 GN=FASTKD2 PE=4 SV=2 CANONICAL=F1SHC9-1" }, "isoforms": [ { "isoform_ac": "F1SHC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHC9/entry#F1SHC9-1", "sequence": { "sequence": "MNNRTGSFLWNLRQFSSLVPSGRTVRLYPLGFCRRQIVYLNWNQRSLLNNFGNRMQSSIRCLFQNALIFKSGGDDFQTKGISTATVFTVDRPLCSRRLSFDSNHPLAADNGLKKNFQHKASKEDVLTKGTKPARISCSTLSQECNSLSDVLDIFSKAPRFPSSNYFSAMWIVAKRMSSDQKRFEKQLMFNHPVFSQLCEQAMREAKIMHYDDLLFSLHAIVKLGIPQNTLLVQTLLRVVQERINECDEKCLSVLSTVLEAMEPCKNVDVLRAGFRMLVDQQVWKIERVFTLQTVMKCIGKDAPVGLKRKLEMKALKELDQFSVLNSQHMFKVLAAMNHRSIILLNECSKTVTSNIHGCPFKILISILQSCRDLRYFNIDLLKGIADYVTTTFDIWKLKQVLFLLILFESFGFRPVGLMDLFMKKAADESGSLNVKNLVCILYVYSSLNHVYKCQTHRFLEIMATALTGSLHHISSENLLNVVCSFCLLNHFPLALINQLFQKDTISDLLTSGDVEKHVLKLCTVTACLKLDDAPYPKNIDLVLPEPPSTVLCPNAKVAKVLSSLLGEGCFSKSVQLPHNYYIDFEIRMDTNRSQVLPFSEVDVVTSDTDIQRVAILCIPKSAYCLDSTHPKGNLALKMRHLKAMGFRVILVHNWEMEKLDMKDAVMLLKTKIYSTEALAPADKNLQSTC", "length": 689, "header": "tr|F1SHC9-1|F1SHC9_PIG Isoform 1 of FAST kinase domains 2 OS=Sus scrofa OX=9823 GN=FASTKD2 PE=4 SV=2 CANONICAL=F1SHC9-1" }, "locus": { "chromosome": "15", "start_pos": 110041648, "end_pos": 110022308, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017567.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017567.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017094.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017094.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517314", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517314", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BSE6-1", "protein_name": "FAST kinase domains 2", "gene_name": "FASTKD2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNSKMGYLLNAVRYLRRCSPVPRPSAPTSRHVVWTGRHRDCLDNTNCRTLFLNAFPSLRGSPLRFLSHKADAFGVGDEVQQEKSREAAVSEQAPQSSLELEKLEGDAQSFRVKAALDENEQFFNRLHTCACPSDVLDLASESAVSIKQFTNCLTTIWKLLRSMSDDQRRYEKRLVFEHPAFVRLCQQLLRDSRRMTRGDLVFSLHAVVNLGVPQNTLLVQTLLRVCQEKLNQLDNRCMSVLATTLAGMDEDKNVSALQAGLQLLVEQRLPSIRDIFILQNLMKCMGKDAPVFLKKKLEMAVLREIDHLTYPNAHRVFLGLVAMNYCSIPVLNACSKKIQENIHDAPYWQLILILEACHSLQYRNIKLFSAVADYVNSIVCLLDKRQIILFLSAFETLGFQPSELMGVLAEKVTEDSEFLDLKSFLIVLRVYSRLNYVPRGQHLLFYETLHSCLNKYLPQISNAELLKAVYSLCILGYLPHLALNQLLKKDSFEELMSGDLYKEKREMMLHCVRTCMELDSPSFMKPAFVPTEIFSSLVSVTLRKAREALLELLGDENMFRQNVQLPYEYRIDFEIWMDSDTKKVLPITATDSYADRSVQRLAFLFVPPSAFCLGTTHPQGKLAMKKRHLSKLGYHVIPVLNKKFQELTNEGAIEFLKGKIYSENVSPFSEVNLCDNN", "length": 677 }, "evidence": [ { "id": "F1SHC9", "url": "https://omabrowser.org/oma/group/F1SHC9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1N1T6-1", "protein_name": "FAST kinase domains 2", "gene_name": "FASTKD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNNRAGSFLWNLRQLSTLVPTGRTVRLYPLAFCRPNIAYSNWNRRNLLNTFGNKMHSSTRYLFQDALIFKSEGDGCQTKGISTATVFTVDKLLCPRRLSFDSKHFLVSVSELKKSFHQEASDEDVLTKRRKPALISSTKLSQECNSLSDVLDIFSKAPTFPSSNYFSAMWTIAKRMSEDQKRFEKQLMFNHPAFNQLCEHVMREAKIMYFGDLLFSLHAIVKLGIPQNTLLVQTLLRVVQERINECDEKCLSVLSTILNTMEPCKNVDVLLAGLRMLVDEQVCKIKHVFTLQTVMRSIGKDAPIGLKRKLEMKALKELDQFSVLNCQHMFAVLAAMNHRSIILLNECSKRVTSNIHGCPFKILINILQSCRDLQYINIDLFKGIADYVATTFDIWKLKKVLFLLILFENFGFRPVGLMDLFIKKAADEPGFLNVKSLVGILNVYSSLNHFYKCQTHEFLEVMASALTGSLHHISSENLLNAVCSFCWMNYFPLALINQLLQKDIIDDLLTSGDVERNVHRLHVVATCLKLDDAPCHKDLDLVLPQLPPMTFCPQPKVAAVLSDLLGEGCFSQSVQLPHNYFIDFEIRMDANRSQVLPFSDVDVVTSTDIQRVAVLCVPKSAYCLDSTHPKGYLAMKMRHLKIMGFHVILVNNWEVEKLEMKDAVAFLKTKIYSPKALSSADIHLQSTC", "length": 688 }, "evidence": [ { "id": "F1SHC9", "url": "https://omabrowser.org/oma/group/F1SHC9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HDK4-1", "protein_name": "FAST kinase domain-containing protein 2, mitochondrial", "gene_name": "Fastkd2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSNKAYSLLWNTRQLSTLVPRSRFLRIYPPGFCRPEVIPSKWNPRNCLLNGFGEGLQPSVRYLFQGVLKSVDCCTQTKGTGCAAVFKLDRVLCPRRLSSDSEHFLVSDGASDHDLMKINSHHASSEDVLSKKMRPTPVNHDKLVQECNSLSDVLDTFSKAPKFPSSSYFSAMWTIAKRISEDKRRFEIQLMFNHSAFSQLCEQMMRESMIMHYNHLLFSLNAVIKLGVPQNTLMVQTLLRVIQERINECDERCLSILSTVLDTLEPSMNVNALRAGFRILVDQQVWKIEHIFTLQTVMKFIGKDTPLALKKKLEMKTLKELDRFSALNSQHMFEVLAAMDYRSVVLLNECSKKVIDNIHGCPSKVLISILQSCKALRYQNKDLFKRIADYVATTFEIWKLNQVIFFLLGFENLGFRPSALMDKLMEKVMEDPDSLNKKNIVSILHVYSSLNHAHKDQNREFLEAMASALTVYLHHISSENLLSAVYSFCLMNYFPQNLINQLIKKNIINELLTSGDTEKNIPKLHVLNTCLKLDESAYYKAVHIPLPQLPLPLPYPSDRVAEVLSHLLKGEGCFSRNVQLPHNYHIDFEIRMDNNRTQVFSFSDVDATSGTNMQRVAVLCVPKSAYCLDSNHPRGLLAMKIRHLNTMGFHVILINNWELRKLRMEDAVAFVKMKIYSDGAFPTTDTTV", "length": 688 }, "evidence": [ { "id": "F1SHC9", "url": "https://omabrowser.org/oma/group/F1SHC9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5M7V7-1", "protein_name": "FAST kinase domain-containing protein 2, mitochondrial", "gene_name": "Fastkd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNNRAHTFLWGIRQFRTSIPRSRALRTYSLVFCKPEVIHSKRNPRNHLLNGFDEGLQPSVRYLFQDIFISKSVAGCTQTRGIIHAAGFKLDRILCPRRLSFDAKHSFVSDGTSDHDLMKTNFHHTSTEDVLTKKMRPTPVNYKKLAQECNSLSDVLDTFSKAPTFPGSNYFLAMWIIAKRISEDKRRFEKQLMFSHPAFNQLCEQMMREAKIMRYDHLLFSLNAIVKLGVPQNSLMVQTLLRTIQERISECDERCLSILSTALVTMEPCMNVNALRAGLRILVDQQVWNINDIFTLQTVMRCIGKDMKALKELGRFSVLNSRHMFEVLAAMDHRSVVLLNECSKIVIDNIHGCPFKVLISILQSCRDLRYQNEDLFKSIADYVATTFDIWKLKHVIFFLLSFETLGFRPPGLMDKLLEKVVQEPGSLTVKNIVSVLHVYSSLNHVHNVQNREFLEALASALTGCLHQISSESLLNAVHSFCMMNYFPLAPINQLIKENIIHELLTSGDTEKNIHKLHVLNTCLKLDESTYKCIHIPLPQLPLTASHPNEKLAEVLSRLLEGDGCFSRNVQLPHNYHIDFEIRMDTNRTQVFSFSEGDASSATNMQRVAVLCVPKSAYCLNSNHLRGLMAMKIRHLNVMGFHVILIHNWELKKLKMEDAVTFVRKKIYSDEALATTDESV", "length": 679 }, "evidence": [ { "id": "F1SHC9", "url": "https://omabrowser.org/oma/group/F1SHC9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q922E6-1", "protein_name": "FAST kinase domain-containing protein 2, mitochondrial", "gene_name": "Fastkd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSKARSLLWTIRRFSTLLPRSRALRIDPLGTCRPEVIHSKWNPRNHRLNVFDEGLQPSVRYLFQDIFISKSVDGCIQTKGISHSAVFKPDRLLCPRRLSFDAKHSFVSDGTSDHDLKKINFHHTSSEDVFTKKVRPTPVNYKKLAQECNSLSDVLDTFSKAPTFPGSNYFLAMWIIAKRISEDKRRFERQLMFSHPAFNQLCEQMMREAKIMHYDHLLFSLNAIVKLGIPQNTLMVQTLLRTIQERINECDERCLSILSTALVSMEPCMNVNALRAGLRILVDQQVWNIKHVFTLQTVMKCIGKDAPSALKKKLEMKALKELGRFSILNSQHMFEVLAAMDLRSVVLLNECSKVVIDNVHGCPFKVLISILQSCRDLRYQNEDLFKSIAEYVATTFDIWKLKQVIFFLLLFETLGFRPPGLMDKLMEKVVQEPGSLNVKNIVSILHVYSSLNHVHKIHNREFLEALASALTGCLHHISSESLLNAVHSFCMMNYFPLAPINQLIKENIINELLTSGDTEKNIHKLHVLNTCLKLDESTYKSVHIPLPQLPLSASQPNEKLAEVLSRLLEGEGRFSRNVPLPHNYHIDFEIRMDTNRTQVFSFSDVDASSATNMQRVAVLCVPKSVYCLNSCHPRGLMAMKIRHLNVMGFHVILIHNWELKKLKMEDAVTFVRKKIYSDEVLPTADTTV", "length": 689 }, "evidence": [ { "id": "F1SHC9", "url": "https://omabrowser.org/oma/group/F1SHC9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NYY8-1", "protein_name": "FAST kinase domain-containing protein 2, mitochondrial", "gene_name": "FASTKD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTTLKPFGSVSVESKMNNKAGSFFWNLRQFSTLVSTSRTMRLCCLGLCKPKIVHSNWNILNNFHNRMQSTDIIRYLFQDAFIFKSDVGFQTKGISTLTALRIERLLYAKRLFFDSKQSLVPVDKSDDELKKVNLNHEVSNEDVLTKETKPNRISSRKLSEECNSLSDVLDAFSKAPTFPSSNYFTAMWTIAKRLSDDQKRFEKRLMFSHPAFNQLCEHMMREAKIMQYKYLLFSLHAIVKLGIPQNTILVQTLLRVTQERINECDEICLSVLSTVLEAMEPCKNVHVLRTGFRILVDQQVWKIEDVFTLQVVMKCIGKDAPIALKRKLEMKALRELDRFSVLNSQHMFEVLAAMNHRSLILLDECSKVVLDNIHGCPLRIMINILQSCKDLQYHNLDLFKGLADYVAATFDIWKFRKVLFILILFENLGFRPVGLMDLFMKRIVEDPESLNMKNILSILHTYSSLNHVYKCQNKEQFVEVMASALTGYLHTISSENLLDAVYSFCLMNYFPLAPFNQLLQKDIISELLTSDDMKNAYKLHTLDTCLKLDDTVYLRDIALSLPQLPRELPSSHTNAKVAEVLSSLLGGEGHFSKDVHLPHNYHIDFEIRMDTNRNQVLPLSDVDTTSATDIQRVAVLCVSRSAYCLGSSHPRGFLAMKMRHLNAMGFHVILVNNWEMDKLEMEDAVTFLKTKIYSVEALPVAAVNVQSTQ", "length": 710 }, "evidence": [ { "id": "F1SHC9", "url": "https://omabrowser.org/oma/group/F1SHC9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "mitochondrial RNA processing", "id": "GO:0000963", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000963", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" }, { "name": "mitochondrial large ribosomal subunit assembly", "id": "GO:1902775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902775", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" }, { "name": "mitochondrial translation", "id": "GO:0032543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032543", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" }, { "name": "regulation of mitochondrial mRNA stability", "id": "GO:0044528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044528", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" }, { "name": "mitochondrial RNA modification", "id": "GO:1900864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900864", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" }, { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" }, { "name": "mitochondrial nucleoid", "id": "GO:0042645", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042645", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" }, { "name": "ribonucleoprotein granule", "id": "GO:0035770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035770", "evidence": [ { "database": "UniProtKB", "id": "F1SHC9", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 591, "end_pos": 593, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHC9" }, { "id": "PS51286", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51286" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RAP", "eco_id": "ECO_0000259", "start_pos": 613, "end_pos": 670, "start_aa": "Val", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 }, { "start_pos": 591, "end_pos": 593 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHE0-1", "uniprot_ac": "F1SHE0", "uniprot_id": "F1SHE0_PIG", "mass": { "chemical_mass": 113386.0, "monoisotopic_mass": 113386.0 }, "refseq": { "ac": "XP_020931699", "name": "INO80 complex subunit D isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931699" }, "gene_names": [ { "name": "INO80D", "type": "recommended", "evidence": [ { "id": "F1SHE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ] }, { "name": "INO80D", "type": "synonym", "evidence": [ { "id": "XP_020931699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931699" } ] } ], "protein_names": [ { "name": "INO80 complex subunit D isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020931699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931699" } ] }, { "name": "INO80 complex subunit D", "type": "synonym", "evidence": [ { "id": "F1SHE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHE0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "INO80D", "url": "https://www.uniprot.org/uniprotkb/F1SHE0", "locus": { "chromosome": "15", "start_pos": 109307166, "end_pos": 109376463, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016125", "url": "https://www.ensembl.org/id/ENSSSCG00000016125" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016125", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016125", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157743", "url": "https://www.ncbi.nlm.nih.gov/gene/100157743", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157743", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157743", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SWRPQNG", "url": "https://omabrowser.org/oma/group/SWRPQNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHE0", "url": "https://www.orthodb.org/?gene=F1SHE0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16198:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16198:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13891", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13891", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020931699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931699", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHE0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPKKERKKKNDPIDEVKVRHQMDTMAFSLTVPTLALKMPNGLDGMSLSPPGARVPLHYLETELEDPFAFNEEDDDLKKGATVKKKLQSKLAQNRQRQRETEILKVRQEHFSPPPAPSQQQPQPPQQHSHLSPLSTLKPPAPPQGLVCKSPQPQNTSLPMQGVAPTTHTIAQARQLSHKRPLPLLPSSRAPVVDPPRTDQVLMKATAFSPHFSCISRLQRLVKLCTQKHQLDTDLFPHLGLDWSEESGEEPEDSEQASPYQVAWSIRETLRYDRHMSDDDDMESRSSRVTQLCTYFQQKYKHLCRLERAESRQKKCRHTFRKALLQAASREPECTGQLIQELQRAACSRTSLSRTKLKEVEPAACSGTVKGEQCTNKALPFTRHCFQHILLNRSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKKMDNFLRGDSSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLSMPASVSLPVEASQIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFSDVLPRLPDDLQDFDFFEGKNGDLLPTTEEAEELERALQAVTSLECLSTIGVLTQSDGVPVQELSDRGIGVFATGTGASGIQSLSREVNTDLGELLNGRIVHDNFSSLELDENLLRSATLSNPPTPLAGQIQGQFSAPANVGLTSATLISQSALGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSEHVPSPYSDHITSPHTTSYSGDNMAATFSAEMPIMAQHLLPTQLEVPLGGVVNPRTHWGNLPVNLGDPSPFSNLLGADGHLLSTSLSTPPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAELLASTSPKQQLPQFSAAFGHQLSSHSGIPKDLQPSHSSIAPPTGFTVTGATATSTNNASSPFTSPN", "length": 1028, "header": "tr|F1SHE0-1|F1SHE0_PIG Isoform 1 of INO80 complex subunit D OS=Sus scrofa OX=9823 GN=INO80D PE=4 SV=3 CANONICAL=F1SHE0-1" }, "isoforms": [ { "isoform_ac": "F1SHE0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHE0/entry#F1SHE0-1", "sequence": { "sequence": "MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPKKERKKKNDPIDEVKVRHQMDTMAFSLTVPTLALKMPNGLDGMSLSPPGARVPLHYLETELEDPFAFNEEDDDLKKGATVKKKLQSKLAQNRQRQRETEILKVRQEHFSPPPAPSQQQPQPPQQHSHLSPLSTLKPPAPPQGLVCKSPQPQNTSLPMQGVAPTTHTIAQARQLSHKRPLPLLPSSRAPVVDPPRTDQVLMKATAFSPHFSCISRLQRLVKLCTQKHQLDTDLFPHLGLDWSEESGEEPEDSEQASPYQVAWSIRETLRYDRHMSDDDDMESRSSRVTQLCTYFQQKYKHLCRLERAESRQKKCRHTFRKALLQAASREPECTGQLIQELQRAACSRTSLSRTKLKEVEPAACSGTVKGEQCTNKALPFTRHCFQHILLNRSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKKMDNFLRGDSSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLSMPASVSLPVEASQIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFSDVLPRLPDDLQDFDFFEGKNGDLLPTTEEAEELERALQAVTSLECLSTIGVLTQSDGVPVQELSDRGIGVFATGTGASGIQSLSREVNTDLGELLNGRIVHDNFSSLELDENLLRSATLSNPPTPLAGQIQGQFSAPANVGLTSATLISQSALGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSEHVPSPYSDHITSPHTTSYSGDNMAATFSAEMPIMAQHLLPTQLEVPLGGVVNPRTHWGNLPVNLGDPSPFSNLLGADGHLLSTSLSTPPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAELLASTSPKQQLPQFSAAFGHQLSSHSGIPKDLQPSHSSIAPPTGFTVTGATATSTNNASSPFTSPN", "length": 1028, "header": "tr|F1SHE0-1|F1SHE0_PIG Isoform 1 of INO80 complex subunit D OS=Sus scrofa OX=9823 GN=INO80D PE=4 SV=3 CANONICAL=F1SHE0-1" }, "locus": { "chromosome": "15", "start_pos": 109353952, "end_pos": 109311834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050436.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050436.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047357.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047357.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 939, "start_aa": "Thr", "end_pos": 939, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr939", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157743", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157743", "resource": "KEGG Pathway" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4INH3-1", "protein_name": "INO80 complex subunit Da", "gene_name": "ino80da", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKAEERRYCNSHLQVLGFIPKKERKKKQDGLEEVRSRAHVESVALNITVPSLALRDTNGLPASPPCSRLTPMPLLDSDLLDPFAFYEEDSDVEESLLQRPAQRSSSKRKASSTPVIGLRVTARDLEPDIEHFSAVTESCTLPSSPPPPPPSPPQPSQHTERPTYAPLGTVQTLLCKPAPPESASSVPLPPAGLQNQPVIWRPASPRPLSAHDCPQPRSVALRPAAFTAPPVCLLRLQHLVQLYANRQREHGDLFPHLGLDWSEDSADDEDTEELVPLLPQAWRLQERSPHQSSSSDKPLSRRARLAQLCSYLQERYKHLCRRDRAASRHSRYRYAFRKALLHAASKDPDCTAQLIQKLSRSSQTSSCSRSAAPHKYERTACTGSTKGQSCSNTALPFSRHCFQHILLNRSQQLFSSCTARFADGQQCSVPVFDITHQTPLCDEHAKKMDNFLRGDGHRRSQQQQQRRPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLLMPSLSLPTHHAHVRSPSTPELSADELPDDIANEMPDIPNDLELNQEDFSDVLPRLPDDLQDFDLFEGKNGELLPTTEEAEELVRALQAMGSYPDSLVCLSSIGELTQADGVDHRTMATVFSGSGVTPAGIGDLLNGRITSETFPNLDLLHAQTDHHFPSSPSPQPTQSSASSTSPSSGLTERTFPRAPKPDSSPPGSHYSSEHVPSPYRDHISPPHGASFQTDPPLLLEVPLSGAPGPPRTSWNNLPLSLTDPAQFGNLLTAETHLLSTALSTPPSTSHCSAILQPSSSSPSSREPKLQLPQFSAAFGHQLASHSGIPKDLQPSHSSTAPPTGFSITSATAATPPFPQSN", "length": 922 }, "evidence": [ { "id": "F1SHE0", "url": "https://omabrowser.org/oma/group/F1SHE0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A1D5P5H5-1", "protein_name": "INO80 complex subunit D", "gene_name": "INO80D", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPKKERKKKNDPIEEVKVRHQMDTMALSLTMPTLALKMPNGLDGMSLSPPGARLPLHYLEAELEDPFAFNEEDDDLKKGATVRKKLQSKLAQNRQRQRETEILKVRQEHFSPLPAPLQQQPLQQQQHSHLPPSSALLKPTGLPQGIVCKSPQPPNTSLPMQGVAPTTHTIAQARQLSNKRPLPLLPPARAPVTDPPRTDRVLMKATAFSPHSSCMSRLQRLVKLCTRKQQLDTDLFPHLGLDWSEDSGEELEDSEQTSPYQVAWSVRESLGYERHESDDDNADDRSSRVTRLCTYFQQKYKHLCRLERAESRQKKCRHTLRKALLQAASREPERAGQLIQELRRATCARSSTSQARQRDAEPTTCSGTSKGEPCTNKALPFTRHCFQHILLNRSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKKMDNFLRGDSSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLTMPASVSLPVEMPHIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFSDVLPRLPDDLQDFDFFEGKNGDLLPTTEEAEELERALQAVTSLECLSTIGVLTQTDGVPVQELSDRGIGVFSTGAGAPGMQSLSREVNTDLGELLNGRIVHDNFSGLELDENLLRSATLSNPPTPLAGQIQGQFSAPANVGLTSATLISQSGLGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSEHVPSPYSDHITSPHTTSFSGDNLAATFSAEMPMMAQHLLPTQLDVPLSGVVNPRTHWGSLPVNLGDPSPFSNLLGADGHLLSTSLSTPPTTSHSETTQPAFATVTPNSSSVLPGLPQTSFSGMGPASAELMASTSPKQQLPQFSAAFGHQLSSHSGIPKDLQPSHSSIAPPTGFAVTGATATSTNNASAPFTTSN", "length": 1030 }, "evidence": [ { "id": "F1SHE0", "url": "https://omabrowser.org/oma/group/F1SHE0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZTM2-1", "protein_name": "INO80 complex subunit D", "gene_name": "Ino80d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPKKERKKKNDPVDEVKVRHQMDAMAFSLTVPTLALKMPNGLDSMSLSPPGARVPLHYLETELEDPFAFNEEDDDLKKGVTVRKKLQSKLAQNRQRQRETEILKVRQEHFSTPPTPPQQHAHLSPLPTSLKPPAPPQGSVCKSPQPQSTSLPMQGVAPTTHSIAQTRQASHKRPLPLLPSSRAPVSDTPRTDRILMKATAFSPHFSCISRLQRLVKLCTQKHQLDADLFPHLGLDWSEESGEELEDSDQASPYQVAWSVRETLRQERHTSDDDDAESRSSRVTQLCTYFQQKYKHLCRLERAESRQKKCRHTFRKALLQAASKEPECTGQLIQELRRAACSRDSLSQTKLKEVEPAACSGTVKGEQCTNQALPFTRHCFQHILLNRSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKKMDNFLRGDNSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLSMPTSVSLPVQASQIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFADVLPRLPDDLQDFDFFEGKNGDLLPTTEEAEELERALQAVTSLECLSTIGVLSQSDGVPVQGLSDRGMGVFSTGTDASGIQSLSREVNTDLGELLNGRIVHDSFSSLELDENLLHSATLSNPPTPLAGQIQGQFSAPASVGLTSATLLSQSALGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSEHVPSPYSDHITSPHTSYSGDNMAATFSAEMPIMAQHLLPTQLEVPLGGVVNPRTHWGNLPVNLGDPSAFSNLLGADGHLLSTSLSTPPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAELMASTSPKQQLPQFSAAFGHQLSSHSGIPKDLQPSHSSIAPPTGFTVTGATATSTNNASPPFPTPN", "length": 1021 }, "evidence": [ { "id": "F1SHE0", "url": "https://omabrowser.org/oma/group/F1SHE0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BBU9-1", "protein_name": "INO80 complex subunit D", "gene_name": "INO80D", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPKKERKKKNDPIDEVKVRHQMDTMAFSLTVPTLALKMPNGLDGMSLSPPGARVPVHYLETELEDPFAFNEEDDDLKKGATVRKKLQSKLAQNRQRQRETEILKVRQEHFSPPSAPSQQQPPQQHSHLSPLPTLKPPAPPQGVVCKSPQPQNTSLPMQGVAPTTHTIAQARQLSHKRPLPLLPSSRAPAVDPPRTDRVLMKATAFSPHFSCISRLQRLVKLCTQKHQLDTDLFPHLGLDWSEESGEELEDSEQASPYQVAWSIRETLRYERHTSDDDDMESRSSRVTQLCTYFQQKYKHLCRLERAESRQKKCRHTLRKALLQAASREPECAGQLIQELQRAACSRASVSRTTLKEMEAAACSGTVKGEQCTNKALPFTRHCFQHILLNRSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKKMDNFLRGDSSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLSMPTSVSLPVEASRIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFSDVLPRLPDDLQDFDFFEGKNGDLLPTTEEAEELERALQAVTSLECLSTIGVLTQSDGVPVQELSDRGIGVFSTGTGASGIPSLSREVNTDLGELLNGRIVHDNFSSLELDESLLRSATLSNPPTPLAGQIQGQFSAPASVSLTSATLMSQSALGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSEHVPSPYSDHITSPHTTSYSGDNMAATFSAEMPVMAQHLLPTPLEVPLGGVVNPRTHWGNLPVNLGDPSPFSNLLVADGHLLSTSLSTPPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAELLASTSPKQQLPQFSAAFGHQLSSHSGIPKDLQPSHSSIAPPTGFTVTGATATSTNNASSPFTSPN", "length": 1026 }, "evidence": [ { "id": "F1SHE0", "url": "https://omabrowser.org/oma/group/F1SHE0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q53TQ3-1", "protein_name": "INO80 complex subunit D", "gene_name": "INO80D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPKKERKKKNDPIDEVKVRHQMDTMAFSLTVPTLALKMPNGLDGMSLSPPGARVPLHYLETELEDPFAFNEEDDDLKKGATVRKKLQSKLAQNRQRQRETEILKVRQEHFSPPPAPSQQQPPQQHSHLSPLSTSLKPPAPPQGSVCKSPQPQNTSLPMQGVAPTTHTIAQARQLSHKRPLPLLPSSRAPTVDPPRTDRILMKATAFSPHFSCISRLQRLVKLCTQKHQLDTDLFPHLGLDWSEESGEEPEDSEQASPYQVAWSIRETLRYQRHASDDDDAESRSSRVTQLCTYFQQKYKHLCRLERAESRQKKCRHTFRKALLQAASKEPECTGQLIQELRRAACSRTSISRTKLREVEPAACSGTVKGEQCANKALPFTRHCFQHILLNHSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKKMDNFLRGDNSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLSMPASVSLPVEASHIRSPSTPELSADELPDDIANEITDIPHDLELNQEDFSDVLPRLPDDLQDFDFFEGKNGDLLPTTEEAEELERALQAVTSLECLSTIGVLAQSDGVPVQELSDRGIGVFSTGTGASGIQSLSREVNTDLGELLNGRIVHDNFSSLELDENLLRSATLSNPPTPLAGQIQGQFSAPANVGLTSATLISQSALGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSEHVPSPYSDHITSPHTTSYSGDNMAATFSAEMPIMAQHLLPTQLEVPLGGVVNPRTHWGNLPVNLGDPSPFSNLLGADGHLLSTSLSTPPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAELMASTSPKQQLPQFSAAFGHQLSSHSGIPKDLQPSHSSIAPPTGFTVTGATATSTNNASSPFPSPN", "length": 1027 }, "evidence": [ { "id": "F1SHE0", "url": "https://omabrowser.org/oma/group/F1SHE0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q66JY2-3", "protein_name": "INO80 complex subunit D", "gene_name": "Ino80d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPKKERKKKTDPVDEVKARHQMDAMAFSLTVPTLALKMPNGLDSMSLSPPGARVPLHYLDTELEDPFAFNEEDDDLKKGVTVRKKLQSKLAQNRQRQRETEILKVRQEHFSTPPTPPQQHTHLSPLSTSLKPPAPPQGSVCKSPQPQNTSLPMQGVAPTTHSIAQIRQASHKRPLPLLPSSRAPISDAPRTDRILMKAAAFSPHLSCISRLQRLVKLCTQKRQLDADLFPHLGLDWSEESGEELEDADQASPYQVAWSIRETLRHERHTSDDDDMESRSSRVTQLCTYFQQKYKHLCRLERAESRQKKCRHTFRKALLQAASKEPECTGQLIQELRRAACSRASLRQTKLKEVEPAACSGTVKGEQCTKQALPFTRHCFQHILLNRSQQLFSSCTAKFADGQQCSVPVFDITHQTPLCEEHAKKMDNFLRGDNSRKVQHQQQRKPRKKTKPPALTKKHKKKRRRGPRRPQKPIPPAVPQGNLSMPTSVSLPVEASQMRSPSTPELSADELPDDIANEITDIPHDLELNQEDFADVLPRLPDDLQDFDFFEGKNGDLLPTTEEAEELERALQAVTSLECLSTIGVLSQSDGVPVQGLSDRGMGVFSTGTDASGIQSLSREVNTDLGELLNGRIVHDSFSSLELDENLLHSAPLSSPPTALAGQIQGQFSAPASAGLTSATLLSQSALGERAFPGQFHGLHDGSHASQRPHPAQLLSKADDLITSRQQYSSDHSHSSPHGSHYDSEHVPSPYSDHITSPHTSYSGDNMAATFSAEMPIMAQHLLPTQLEVPLGGVVNPRTHWGNLPVNLGDPSAFSNLLGADGHLLSTSLSTPPTTSNSETTQPAFATVTPSSSSVLPGLPQTSFSGMGPSAELMASTSPKQQLPQFSAAFGHQLSSHSGIPKDLQPSHSSIAPPTGFTATGATATSTNNASPPFPSPN", "length": 1021 }, "evidence": [ { "id": "F1SHE0", "url": "https://omabrowser.org/oma/group/F1SHE0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "regulation of DNA strand elongation", "id": "GO:0060382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060382", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" }, { "name": "telomere maintenance", "id": "GO:0000723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000723", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" }, { "name": "positive regulation of DNA repair", "id": "GO:0045739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045739", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" }, { "name": "regulation of DNA replication", "id": "GO:0006275", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006275", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" }, { "name": "regulation of embryonic development", "id": "GO:0045995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045995", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" }, { "name": "positive regulation of telomere maintenance in response to DNA damage", "id": "GO:1904507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904507", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SHE0", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1019, "end_pos": 1021, "annotation": "n_glycosylation_sequon" }, { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 571, "end_pos": 573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 726, "end_pos": 728, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHE0" }, { "id": "PF13891", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13891" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KANL2-like probable zinc-finger", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 78, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 939 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1019, "end_pos": 1021 }, { "start_pos": 238, "end_pos": 240 }, { "start_pos": 475, "end_pos": 477 }, { "start_pos": 571, "end_pos": 573 }, { "start_pos": 726, "end_pos": 728 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHH6-1", "uniprot_ac": "F1SHH6", "uniprot_id": "F1SHH6_PIG", "mass": { "chemical_mass": 71950.0, "monoisotopic_mass": 71950.0 }, "refseq": { "ac": "XP_020940920", "name": "leucine-rich repeat-containing protein 4C", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940920" }, "gene_names": [ { "name": "LRRC4C", "type": "recommended", "evidence": [ { "id": "F1SHH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ] }, { "name": "LRRC4C", "type": "synonym", "evidence": [ { "id": "XP_020940920", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940920" } ] } ], "protein_names": [ { "name": "Leucine rich repeat containing 4C", "type": "synonym", "evidence": [ { "id": "F1SHH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHH6/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 4C", "type": "synonym", "evidence": [ { "id": "XP_020940920", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940920" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC4C", "url": "https://www.uniprot.org/uniprotkb/F1SHH6", "locus": { "chromosome": "2", "start_pos": 21634161, "end_pos": 21457984, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013286", "url": "https://www.ensembl.org/id/ENSSSCG00000013286" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013286", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013286", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106509370", "url": "https://www.ncbi.nlm.nih.gov/gene/106509370", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106509370", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106509370", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NVDEDCG", "url": "https://omabrowser.org/oma/group/NVDEDCG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHH6", "url": "https://www.orthodb.org/?gene=F1SHH6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020940920", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940920", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHH6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLVKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVIDWETTNVTTSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI", "length": 640, "header": "tr|F1SHH6-1|F1SHH6_PIG Isoform 1 of Leucine rich repeat containing 4C OS=Sus scrofa OX=9823 GN=LRRC4C PE=4 SV=1 CANONICAL=F1SHH6-1" }, "isoforms": [ { "isoform_ac": "F1SHH6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHH6/entry#F1SHH6-1", "sequence": { "sequence": "MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLVKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVIDWETTNVTTSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI", "length": 640, "header": "tr|F1SHH6-1|F1SHH6_PIG Isoform 1 of Leucine rich repeat containing 4C OS=Sus scrofa OX=9823 GN=LRRC4C PE=4 SV=1 CANONICAL=F1SHH6-1" }, "locus": { "chromosome": "2", "start_pos": 21633506, "end_pos": 21631587, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086689.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086689.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062574.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062574.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 479, "start_aa": "Thr", "end_pos": 479, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr479", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106509370", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106509370", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M0G8-1", "protein_name": "Leucine-rich repeat-containing protein 4C", "gene_name": "LOC100765202", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVIDWETTNVTTSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDELTGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI", "length": 640 }, "evidence": [ { "id": "F1SHH6", "url": "https://omabrowser.org/oma/group/F1SHH6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZXT1-1", "protein_name": "Leucine rich repeat containing 4C", "gene_name": "Lrrc4c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVIDWETTNVTTSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI", "length": 640 }, "evidence": [ { "id": "F1SHH6", "url": "https://omabrowser.org/oma/group/F1SHH6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MXH5-1", "protein_name": "Leucine rich repeat containing 4C", "gene_name": "LRRC4C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLRDVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVIDWETTNVTTSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI", "length": 640 }, "evidence": [ { "id": "F1SHH6", "url": "https://omabrowser.org/oma/group/F1SHH6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NTY3-1", "protein_name": "Leucine rich repeat containing 4C", "gene_name": "LRRC4C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLRDVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLVKLDELDLSGNHLTAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLRLERIHLHHNPWNCNCDILWLSWWIKDKAPSNTACCARCHTPPSLKGRYIGELDLNYFTCYAPVIVEPPADLNVTEGMAAEMKCRASTSLTSVSWITPNGSVMTHGAYRVRIAVLSDGTLNFTKVTVQDTGLYTCMVSNSVGNTTASATLNVTALDNPGYTYFSTVTVETVEPSQDEAQTTEQVGPTPVTSWETTNMTTSLTPQSTRSTEKTFTIPVTDANNGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDELTGDTPIESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI", "length": 638 }, "evidence": [ { "id": "F1SHH6", "url": "https://omabrowser.org/oma/group/F1SHH6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8C031-1", "protein_name": "Leucine-rich repeat-containing protein 4C", "gene_name": "Lrrc4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIRDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVIDWETTNVTTSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI", "length": 640 }, "evidence": [ { "id": "F1SHH6", "url": "https://omabrowser.org/oma/group/F1SHH6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HCJ2-1", "protein_name": "Leucine-rich repeat-containing protein 4C", "gene_name": "LRRC4C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLNKMTLHPQQIMIGPRFNRALFDPLLVVLLALQLLVVAGLVRAQTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVVDWETTNVTTSLTPQSTRSTEKTFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHHAPTRTVEIINVDDEITGDTPMESHLPMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVHEPLLIRMNSKDNVQETQI", "length": 640 }, "evidence": [ { "id": "F1SHH6", "url": "https://omabrowser.org/oma/group/F1SHH6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "pmid": "" }, { "name": "postsynaptic density membrane", "id": "GO:0098839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098839", "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "pmid": "" }, { "name": "Schaffer collateral - CA1 synapse", "id": "GO:0098685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098685", "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of axonogenesis", "id": "GO:0050770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050770", "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "pmid": "" }, { "name": "modulation of chemical synaptic transmission", "id": "GO:0050804", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050804", "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "pmid": "" }, { "name": "synaptic membrane adhesion", "id": "GO:0099560", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099560", "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cell-cell adhesion mediator activity", "id": "GO:0098632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098632", "evidence": [ { "database": "UniProtKB", "id": "F1SHH6", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" }, { "start_pos": 415, "end_pos": 417, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 488, "end_pos": 490, "annotation": "n_glycosylation_sequon" }, { "start_pos": 606, "end_pos": 608, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHH6" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 354, "end_pos": 442, "start_aa": "Pro", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 479 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 }, { "start_pos": 278, "end_pos": 280 }, { "start_pos": 364, "end_pos": 366 }, { "start_pos": 390, "end_pos": 392 }, { "start_pos": 412, "end_pos": 414 }, { "start_pos": 415, "end_pos": 417 }, { "start_pos": 434, "end_pos": 436 }, { "start_pos": 442, "end_pos": 444 }, { "start_pos": 488, "end_pos": 490 }, { "start_pos": 606, "end_pos": 608 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHI1-1", "uniprot_ac": "F1SHI1", "uniprot_id": "F1SHI1_PIG", "mass": { "chemical_mass": 20433.0, "monoisotopic_mass": 20433.0 }, "refseq": {}, "gene_names": [ { "name": "EXT2", "type": "recommended", "evidence": [ { "id": "F1SHI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHI1" } ] } ], "protein_names": [ { "name": "Glycosyl transferase 64 domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SHI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHI1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHI1", "url": "https://www.uniprot.org/uniprotkb/F1SHI1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EXT2", "url": "https://www.uniprot.org/uniprotkb/F1SHI1", "locus": {} } ], "crossref": [ { "id": "F1SHI1", "url": "https://alphafold.ebi.ac.uk/entry/F1SHI1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013281", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013281", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004263", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004263", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48261", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48261", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48261:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48261:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09258", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09258", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SHI1", "url": "https://www.uniprot.org/uniprotkb/F1SHI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHI1-1", "url": "https://www.uniprot.org/uniprotkb/F1SHI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTSDELQFGYEVWREFPDRLVGYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIKNWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFAVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIGSL", "length": 175, "header": "tr|F1SHI1-1|F1SHI1_PIG Isoform 1 of Glycosyl transferase 64 domain-containing protein OS=Sus scrofa OX=9823 GN=EXT2 PE=3 SV=4 CANONICAL=F1SHI1-1" }, "isoforms": [ { "isoform_ac": "F1SHI1-1", "url": "https://www.uniprot.org/uniprotkb/F1SHI1/entry#F1SHI1-1", "sequence": { "sequence": "MLTSDELQFGYEVWREFPDRLVGYPGRLHLWDHEMSKWKYESEWTNEVSMVLTGAAFYHKYFNYLYTYKMPGDIKNWVDAHMNCEDIAMNFLVANVTGKAVIKVTPRKKFKCPECTAIDGLSLDQTHMVERSECINKFAVFGTMPLKVVEHRADPVLYKDDFPEKLKSFPNIGSL", "length": 175, "header": "tr|F1SHI1-1|F1SHI1_PIG Isoform 1 of Glycosyl transferase 64 domain-containing protein OS=Sus scrofa OX=9823 GN=EXT2 PE=3 SV=4 CANONICAL=F1SHI1-1" }, "locus": { "chromosome": "2", "start_pos": 18140539, "end_pos": 18100382, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014505.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014505.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014113.5", "url": "https://www.ensembl.org/id/ENSSSCP00000014113.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHI1", "url": "https://www.uniprot.org/uniprotkb/F1SHI1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SHI1", "url": "https://www.uniprot.org/uniprotkb/F1SHI1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glycoprotein biosynthetic process", "id": "GO:0009101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009101", "evidence": [ { "database": "UniProtKB", "id": "F1SHI1", "url": "https://www.uniprot.org/uniprotkb/F1SHI1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "F1SHI1", "url": "https://www.uniprot.org/uniprotkb/F1SHI1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHI1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 175, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHI1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHI1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHI1" }, { "id": "PF09258", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09258" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl transferase 64", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 158, "start_aa": "Leu", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHI4-1", "uniprot_ac": "F1SHI4", "uniprot_id": "F1SHI4_PIG", "mass": { "chemical_mass": 27680.0, "monoisotopic_mass": 27680.0 }, "refseq": { "ac": "XP_003122898", "name": "tetraspanin-18", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122898" }, "gene_names": [ { "name": "TSPAN18", "type": "recommended", "evidence": [ { "id": "F1SHI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHI4" } ] }, { "name": "TSPAN18", "type": "synonym", "evidence": [ { "id": "XP_003122898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122898" } ] } ], "protein_names": [ { "name": "Tetraspanin", "type": "recommended", "evidence": [ { "id": "F1SHI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHI4/entry#names_and_taxonomy" } ] }, { "name": "tetraspanin-18", "type": "synonym", "evidence": [ { "id": "XP_003122898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122898" } ] } ], "function": [ { "annotation": "Plays a role in the cell surface localization of ORAI1 and may participate in the regulation of Ca(2+) signaling and the VWF release in response to inflammatory stimuli.", "evidence": [ { "database": "UniProtKB", "id": "F1SHI4", "url": "https://www.uniprot.org/uniprotkb/F1SHI4#function" }, { "database": "UniProtKB", "id": "ARBA00057431", "url": "https://www.uniprot.org/uniprotkb/ARBA00057431#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHI4", "url": "https://www.uniprot.org/uniprotkb/F1SHI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TSPAN18", "url": "https://www.uniprot.org/uniprotkb/F1SHI4", "locus": { "chromosome": "2", "start_pos": 17465633, "end_pos": 17634715, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013278", "url": "https://www.ensembl.org/id/ENSSSCG00000013278" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013278", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013278", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03156", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03156", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520775", "url": "https://www.ncbi.nlm.nih.gov/gene/100520775", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018503", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018503", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520775", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520775", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ACCQREP", "url": "https://omabrowser.org/oma/group/ACCQREP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHI4", "url": "https://www.orthodb.org/?gene=F1SHI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282:SF249", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282:SF249", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122898", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122898", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHI4", "url": "https://www.uniprot.org/uniprotkb/F1SHI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGDCLSCMKYLMFVFNFFIFLGGACLLGVGIWVMVDPTGFREIVAANPLLITGAYILLAMGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFTKELTKHYQGNNDTDVFSATWNSVMITFGCCGVNGPEDFKFASVFRLLTLDSDEVPEACCRREPQSRDGVLLSREECLLGRELFLNKQGCYTVILNAFETYVYLAGALAIGVLAIELFAMIFAMCLFRGIQ", "length": 248, "header": "tr|F1SHI4-1|F1SHI4_PIG Isoform 1 of Tetraspanin OS=Sus scrofa OX=9823 GN=TSPAN18 PE=1 SV=2 CANONICAL=F1SHI4-1" }, "isoforms": [ { "isoform_ac": "F1SHI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHI4/entry#F1SHI4-1", "sequence": { "sequence": "MEGDCLSCMKYLMFVFNFFIFLGGACLLGVGIWVMVDPTGFREIVAANPLLITGAYILLAMGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFTKELTKHYQGNNDTDVFSATWNSVMITFGCCGVNGPEDFKFASVFRLLTLDSDEVPEACCRREPQSRDGVLLSREECLLGRELFLNKQGCYTVILNAFETYVYLAGALAIGVLAIELFAMIFAMCLFRGIQ", "length": 248, "header": "tr|F1SHI4-1|F1SHI4_PIG Isoform 1 of Tetraspanin OS=Sus scrofa OX=9823 GN=TSPAN18 PE=1 SV=2 CANONICAL=F1SHI4-1" }, "locus": { "chromosome": "2", "start_pos": 17492227, "end_pos": 17468732, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014502.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014502.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014110.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014110.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHI4", "url": "https://www.uniprot.org/uniprotkb/F1SHI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520775", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520775", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M5C9-1", "protein_name": "Tetraspanin", "gene_name": "Tspan18", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGDCLSCMKYLMFVFNFFVFLGGACLLGVGIWVLVDPTGFREIVATNPLLTTGAYIVLAMGGLLFLLGFLGCCGAVRENRCLLLFFFLFILIIFLVELSAAILAFIFREHLTREFFTKELTKHYQGNNDTDVFSATWNSVMITFGCCGVNGPEDFKTASVFRLLTLDSEEVPKACCRREPQTRDGMLLSREECQLGRSPFINKQGCYTVILNTFETYVYLAGAFAIGVLAIELFLMIFAMCLFRGIQ", "length": 248 }, "evidence": [ { "id": "F1SHI4", "url": "https://omabrowser.org/oma/group/F1SHI4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A3U2-1", "protein_name": "Tetraspanin", "gene_name": "Tspan18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGDCLSCMKYLMFVFNFFVFLGGACLLGVGIWVLVDPTGFREIVATNPLLTTGAYVVLAMGGLLFLLGFLGCCGAVRENRCLLLFFFLFILIIFLVELSAAILAFIFREHLTREFFTKELTKHYQGDNDTDVFSATWNSVMITFGCCGVNGPEDFKLASVFRLLTLDTEEVPKACCRREPQTRDGVVLSREECQLGRNPFINKQGCYTVILNTFETYVYLAGAFAIGVLAIELFLMVFAMCLFRGIQ", "length": 248 }, "evidence": [ { "id": "F1SHI4", "url": "https://omabrowser.org/oma/group/F1SHI4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q58CY8-1", "protein_name": "Tetraspanin-18", "gene_name": "TSPAN18", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGDCLSCMKYLMFVFNFFIFLGGACLLGIGIWVMVDPTGFREIVAANPLLITGAYILLAMGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRGNLTREFFTKELTKHYQGSNDTDVFSATWNSVMITFGCCGVNGPEDFKYASVFRLLTLDSDEVPEACCRREPQSRDGVLLSREECLLGRDLFLNKQGCYTVILNAFETYVYLAGALAIGVLAIELFAMIFAMCLFRGIIQ", "length": 249 }, "evidence": [ { "id": "F1SHI4", "url": "https://omabrowser.org/oma/group/F1SHI4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q80WR1-1", "protein_name": "Tetraspanin-18", "gene_name": "Tspan18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGDCLSCMKYLMFVFNFFVFLGGACLLGVGIWVLVDPTGFREIVATNPLLTTGAYIVLAMGGLLFLLGFLGCCGAVRENRCLLLFFFLFILIIFLVELSAAILAFIFREHLTREFFTKELTKHYQGDNDTDVFSATWNSVMITFGCCGVNGPEDFKLASVFRLLTLDTEEVPKACCRREPQTRDGVVLSREECQLGRNPFINKQGCYTVILNTFETYVYLAGAFAIGVLAIELFLMVFAMCLFRGIQ", "length": 248 }, "evidence": [ { "id": "F1SHI4", "url": "https://omabrowser.org/oma/group/F1SHI4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96SJ8-1", "protein_name": "Tetraspanin-18", "gene_name": "TSPAN18", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGDCLSCMKYLMFVFNFFIFLGGACLLAIGIWVMVDPTGFREIVAANPLLLTGAYILLAMGGLLFLLGFLGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFTKELTKHYQGNNDTDVFSATWNSVMITFGCCGVNGPEDFKFASVFRLLTLDSEEVPEACCRREPQSRDGVLLSREECLLGRSLFLNKQGCYTVILNTFETYVYLAGALAIGVLAIELFAMIFAMCLFRGIQ", "length": 248 }, "evidence": [ { "id": "F1SHI4", "url": "https://omabrowser.org/oma/group/F1SHI4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SHI4", "url": "https://www.uniprot.org/uniprotkb/F1SHI4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "F1SHI4", "url": "https://www.uniprot.org/uniprotkb/F1SHI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of sprouting angiogenesis", "id": "GO:1903670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903670", "evidence": [ { "database": "UniProtKB", "id": "F1SHI4", "url": "https://www.uniprot.org/uniprotkb/F1SHI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 129, "end_pos": 131 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHJ6-1", "uniprot_ac": "F1SHJ6", "uniprot_id": "F1SHJ6_PIG", "mass": { "chemical_mass": 46739.0, "monoisotopic_mass": 46739.0 }, "refseq": { "ac": "XP_005661026", "name": "carbohydrate sulfotransferase 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661026" }, "gene_names": [ { "name": "CHST1", "type": "recommended", "evidence": [ { "id": "F1SHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ] }, { "name": "CHST1", "type": "synonym", "evidence": [ { "id": "XP_005661026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661026" } ] } ], "protein_names": [ { "name": "Sulfotransferase", "type": "recommended", "evidence": [ { "id": "F1SHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6/entry#names_and_taxonomy" } ] }, { "name": "2.8.2.-", "type": "synonym", "evidence": [ { "id": "F1SHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6/entry#names_and_taxonomy" } ] }, { "name": "carbohydrate sulfotransferase 1", "type": "synonym", "evidence": [ { "id": "XP_005661026", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661026" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHST1", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6", "locus": { "chromosome": "2", "start_pos": 16789027, "end_pos": 16772262, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013273", "url": "https://www.ensembl.org/id/ENSSSCG00000013273" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013273", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013273", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519885", "url": "https://www.ncbi.nlm.nih.gov/gene/100519885", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016469", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016469", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519885", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519885", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NVKHWIR", "url": "https://omabrowser.org/oma/group/NVKHWIR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHJ6", "url": "https://www.orthodb.org/?gene=F1SHJ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10704", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10704", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10704:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10704:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00685", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022854", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022854", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005661026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005661026", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHJ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLAEAGLAERLCEEGPTFAYNLSRKTHILILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLYDCDLYFLENYIKPPPVNHTTDRIFRRGASRVLCSRPVCDPPGSADLVLEEGDCVRKCGLLNLTLAAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLDVTQLTTVCEDFSNSVSTGLMRPAWLKGKYMLVRYEDLARNPMKKTEEIYGFLGIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQRVLAQLGYKMASSEEELKNPSISLVEERDFRPFS", "length": 411, "header": "tr|F1SHJ6-1|F1SHJ6_PIG Isoform 1 of Sulfotransferase OS=Sus scrofa OX=9823 GN=CHST1 PE=3 SV=1 CANONICAL=F1SHJ6-1" }, "isoforms": [ { "isoform_ac": "F1SHJ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6/entry#F1SHJ6-1", "sequence": { "sequence": "MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLAEAGLAERLCEEGPTFAYNLSRKTHILILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLYDCDLYFLENYIKPPPVNHTTDRIFRRGASRVLCSRPVCDPPGSADLVLEEGDCVRKCGLLNLTLAAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLDVTQLTTVCEDFSNSVSTGLMRPAWLKGKYMLVRYEDLARNPMKKTEEIYGFLGIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQRVLAQLGYKMASSEEELKNPSISLVEERDFRPFS", "length": 411, "header": "tr|F1SHJ6-1|F1SHJ6_PIG Isoform 1 of Sulfotransferase OS=Sus scrofa OX=9823 GN=CHST1 PE=3 SV=1 CANONICAL=F1SHJ6-1" }, "locus": { "chromosome": "2", "start_pos": 16788167, "end_pos": 16786935, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078007.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078007.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062861.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062861.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519885", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519885", "resource": "KEGG Pathway" }, { "id": "R-SSC-2022854", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022854", "resource": "Reactome", "description": "Keratan sulfate biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "G3GYH5-1", "protein_name": "Sulfotransferase", "gene_name": "Chst1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGMTETGLAERLCEEGPTFSYNLSRKIHVLILATTRSGSSFVGQLFNQHMDVFYLFEPLYHVQNTLIPRFTQGKSSADRRVMLGASRDLLRSLYDCDLYFLENYIKPPPINHTTDRVFRRGASRVLCSRPVCDPPGSPDLVLEEGDCVRKCGLLNLTLAAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLDVTQLTTVCEDFSSSVSTGLMRPSWLKGKYMLVRYEDLARNPMKKTEEIYEFLGIPLDGHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQQVLAQLGYKMANSEEELKNPAISLVEERDFRPFL", "length": 411 }, "evidence": [ { "id": "F1SHJ6", "url": "https://omabrowser.org/oma/group/F1SHJ6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O43916-1", "protein_name": "Carbohydrate sulfotransferase 1", "gene_name": "CHST1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLAEAGLAERLCEESPTFAYNLSRKTHILILATTRSGSSFVGQLFNQHLDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLYDCDLYFLENYIKPPPVNHTTDRIFRRGASRVLCSRPVCDPPGPADLVLEEGDCVRKCGLLNLTVAAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLDVTQLTTVCEDFSNSVSTGLMRPPWLKGKYMLVRYEDLARNPMKKTEEIYGFLGIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQQVLAQLGYKIAASEEELKNPSVSLVEERDFRPFS", "length": 411 }, "evidence": [ { "id": "F1SHJ6", "url": "https://omabrowser.org/oma/group/F1SHJ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5RJQ0-1", "protein_name": "Carbohydrate sulfotransferase 1", "gene_name": "Chst1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLTETGLAERLCEEGPTFSYNLSRKTHVLILATTRSGSSFVGQLFNQHMDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLYDCDLYFLENYIKPPPVNHTTDRVFRRGASRVLCSRPVCDPPGASDLILEEGDCVRKCGLLNLTLAAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLDVTQLTTVCEDFSSSVSTGLMRPSWLKGKYMLVRYEDLARNPMKKTEEIYEFLGIPLDSHVARWIQNNTRGDPTLGKHKYGTVRNSAATAEKWRFRLSYDIVAFAQNACQHVLAQLGYKMATSEEELKNPAISLVEERDFRPFL", "length": 411 }, "evidence": [ { "id": "F1SHJ6", "url": "https://omabrowser.org/oma/group/F1SHJ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9EQC0-1", "protein_name": "Carbohydrate sulfotransferase 1", "gene_name": "Chst1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQCSWKAVLLLALASIAIQYTAIRTFTAKSFHTCPGLTDTGLAERLCEEGPTFSYNLSRKTHVLILATTRSGSSFVGQLFNQHMDVFYLFEPLYHVQNTLIPRFTQGKSPADRRVMLGASRDLLRSLYDCDLYFLENYIKPPPVNHTTNRVFRRGASRVLCSRPVCDPPGSSDLILEEGDCVRMCGLLNLTLAAEACRERSHVAIKTVRVPEVNDLRALVEDPRLNLKVIQLVRDPRGILASRSETFRDTYRLWRLWYGTGRKPYNLDVTQLTTVCEDFSSSVSTGLMRPSWLKGKYMLVRYEDLARNPMKKTEEIYEFLGIPLDSHVAHWIQNNTRGDPTLGKHKYSTVRNSAATAEKWRFRLSYDIVAFAQNACQQVLAQLGYKMANSEEELKNPAISLVEERDFRPFL", "length": 411 }, "evidence": [ { "id": "F1SHJ6", "url": "https://omabrowser.org/oma/group/F1SHJ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "N-acetylglucosamine 6-O-sulfotransferase activity", "id": "GO:0001517", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001517", "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "pmid": "" }, { "name": "keratan sulfotransferase activity", "id": "GO:0045130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045130", "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "N-acetylglucosamine metabolic process", "id": "GO:0006044", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006044", "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "pmid": "" }, { "name": "sulfur compound metabolic process", "id": "GO:0006790", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006790", "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "pmid": "" }, { "name": "keratan sulfate proteoglycan biosynthetic process", "id": "GO:0018146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018146", "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "pmid": "" }, { "name": "galactose metabolic process", "id": "GO:0006012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006012", "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "pmid": "" }, { "name": "keratan sulfate proteoglycan metabolic process", "id": "GO:0042339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042339", "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SHJ6", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-2046175", "name": "CHST1 transfers sulfate to Gal on keratan chain", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2046175", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2046175" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHJ6" }, { "id": "PF00685", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sulfotransferase", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 383, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 189, "end_pos": 191 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHK4-1", "uniprot_ac": "F1SHK4", "uniprot_id": "F1SHK4_PIG", "mass": { "chemical_mass": 37468.0, "monoisotopic_mass": 37468.0 }, "refseq": { "ac": "XP_001925375", "name": "homeobox protein Nkx-2.8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925375" }, "gene_names": [ { "name": "NKX2-8", "type": "recommended", "evidence": [ { "id": "F1SHK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ] }, { "name": "NKX2-8", "type": "synonym", "evidence": [ { "id": "XP_001925375", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925375" } ] } ], "protein_names": [ { "name": "NK2 homeobox 8", "type": "synonym", "evidence": [ { "id": "F1SHK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHK4/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein Nkx-2.8", "type": "synonym", "evidence": [ { "id": "XP_001925375", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925375" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NKX2-8", "url": "https://www.uniprot.org/uniprotkb/F1SHK4", "locus": { "chromosome": "7", "start_pos": 63426514, "end_pos": 63423403, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001944", "url": "https://www.ensembl.org/id/ENSSSCG00000001944" } ] } } ], "crossref": [ { "id": "F1SHK4", "url": "https://alphafold.ebi.ac.uk/entry/F1SHK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001944", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001944", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155618", "url": "https://www.ncbi.nlm.nih.gov/gene/100155618", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155618", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155618", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SHK4", "url": "https://www.orthodb.org/?gene=F1SHK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24340", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24340", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24340:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24340:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001925375", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925375", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHK4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPPPFPALPRGQAWCQPWRRRKLGRAGGGHRSPPKMLFFGNNPHYLPPLCANQTESLMPRTASCCLWEPVHGVRLPRPLIRTASPAAPRFPACPAPASFLSSAMANPGRLSFTVRRLLDLPEQDAQHLRRGEPEQRAPGLGSCASWLESERSHYPSSDESSPEASPRDSSQRPSAGPASPSSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAAASEVRAAPGLLRRVVVPVLVRDGQPCGGGGGGGSEVGSAAARNKNGVAPAAACPLPGYAAFGPGSAFGLFPAYQHLATPALVSWNW", "length": 345, "header": "tr|F1SHK4-1|F1SHK4_PIG Isoform 1 of NK2 homeobox 8 OS=Sus scrofa OX=9823 GN=NKX2-8 PE=3 SV=2 CANONICAL=F1SHK4-1" }, "isoforms": [ { "isoform_ac": "F1SHK4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHK4/entry#F1SHK4-1", "sequence": { "sequence": "MPPPPFPALPRGQAWCQPWRRRKLGRAGGGHRSPPKMLFFGNNPHYLPPLCANQTESLMPRTASCCLWEPVHGVRLPRPLIRTASPAAPRFPACPAPASFLSSAMANPGRLSFTVRRLLDLPEQDAQHLRRGEPEQRAPGLGSCASWLESERSHYPSSDESSPEASPRDSSQRPSAGPASPSSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLARLLRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAAASEVRAAPGLLRRVVVPVLVRDGQPCGGGGGGGSEVGSAAARNKNGVAPAAACPLPGYAAFGPGSAFGLFPAYQHLATPALVSWNW", "length": 345, "header": "tr|F1SHK4-1|F1SHK4_PIG Isoform 1 of NK2 homeobox 8 OS=Sus scrofa OX=9823 GN=NKX2-8 PE=3 SV=2 CANONICAL=F1SHK4-1" }, "locus": { "chromosome": "7", "start_pos": 63425510, "end_pos": 63423602, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002176.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002176.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002125.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002125.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155618", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155618", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ], "pmid": "" }, { "name": "transcription by RNA polymerase II", "id": "GO:0006366", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006366", "evidence": [ { "database": "UniProtKB", "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SHK4", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHK4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 345, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHK4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHK4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHK4" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 186, "end_pos": 246, "start_aa": "Glu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHL0-1", "uniprot_ac": "F1SHL0", "uniprot_id": "F1SHL0_PIG", "mass": { "chemical_mass": 51976.0, "monoisotopic_mass": 51976.0 }, "refseq": { "ac": "XP_005666250", "name": "C-type lectin domain family 14 member A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666250" }, "gene_names": [ { "name": "CLEC14A", "type": "recommended", "evidence": [ { "id": "F1SHL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ] }, { "name": "CLEC14A", "type": "synonym", "evidence": [ { "id": "XP_005666250", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666250" } ] } ], "protein_names": [ { "name": "C-type lectin domain family 14 member A", "type": "recommended", "evidence": [ { "id": "F1SHL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL0/entry#names_and_taxonomy" } ] }, { "name": "C-type lectin domain family 14 member A", "type": "synonym", "evidence": [ { "id": "XP_005666250", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666250" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CLEC14A", "url": "https://www.uniprot.org/uniprotkb/F1SHL0", "locus": { "chromosome": "7", "start_pos": 61832808, "end_pos": 61826015, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023760", "url": "https://www.ensembl.org/id/ENSSSCG00000023760" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023760", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023760", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157365", "url": "https://www.ncbi.nlm.nih.gov/gene/100157365", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157365", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157365", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ELPNCLD", "url": "https://omabrowser.org/oma/group/ELPNCLD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHL0", "url": "https://www.orthodb.org/?gene=F1SHL0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14789", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14789", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14789:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14789:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_005666250", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666250", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHL0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPTLALCLFWQAFWPRPGGGEHPTADRAVCLASGACYSLHHATFKRQMAEEACNLRGGVLSTVRGGAELRAVLTLLRAGPGPGGGSKDLLFWVALERRRSHCTLENEPLRGFSWLSPDDVGESESDTLQWVEEPQRSCTARSCAGLQATGGIEPAGWKEMRCHGRANGYLCKYQFEGLCPAPRPGAASNLSYRAPFQLYSAALDFSPPGTEVSALCPGQLSITATCRVDGVGARWDGIPSGAVLCPCPGRYLRAGKCSELPDCLDDLGGFACECAAGFMLGKDGRSCVTKGEGQPGPGGTRVPTWHPQATAASAVPKRTWSPSVQEKPGELPHAPEQGSSATSIPEEIPRWGAQSTTSTLHMSPLTESKADNTSSGTVIPKFNSTSYSDNPQAFDASSTVVFILVSIAVVVLVILTVTVLGLFKLCFHKSPSPQPRKGPLAPQGTDSDAEATAPSSTSAHCTENGVKVEDCGLWNRVEGASRPGSSLGSGDT", "length": 493, "header": "tr|F1SHL0-1|F1SHL0_PIG Isoform 1 of C-type lectin domain family 14 member A OS=Sus scrofa OX=9823 GN=CLEC14A PE=1 SV=1 CANONICAL=F1SHL0-1" }, "isoforms": [ { "isoform_ac": "F1SHL0-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL0/entry#F1SHL0-1", "sequence": { "sequence": "MRPTLALCLFWQAFWPRPGGGEHPTADRAVCLASGACYSLHHATFKRQMAEEACNLRGGVLSTVRGGAELRAVLTLLRAGPGPGGGSKDLLFWVALERRRSHCTLENEPLRGFSWLSPDDVGESESDTLQWVEEPQRSCTARSCAGLQATGGIEPAGWKEMRCHGRANGYLCKYQFEGLCPAPRPGAASNLSYRAPFQLYSAALDFSPPGTEVSALCPGQLSITATCRVDGVGARWDGIPSGAVLCPCPGRYLRAGKCSELPDCLDDLGGFACECAAGFMLGKDGRSCVTKGEGQPGPGGTRVPTWHPQATAASAVPKRTWSPSVQEKPGELPHAPEQGSSATSIPEEIPRWGAQSTTSTLHMSPLTESKADNTSSGTVIPKFNSTSYSDNPQAFDASSTVVFILVSIAVVVLVILTVTVLGLFKLCFHKSPSPQPRKGPLAPQGTDSDAEATAPSSTSAHCTENGVKVEDCGLWNRVEGASRPGSSLGSGDT", "length": 493, "header": "tr|F1SHL0-1|F1SHL0_PIG Isoform 1 of C-type lectin domain family 14 member A OS=Sus scrofa OX=9823 GN=CLEC14A PE=1 SV=1 CANONICAL=F1SHL0-1" }, "locus": { "chromosome": "7", "start_pos": 61827534, "end_pos": 61826056, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025386.5", "url": "https://www.ensembl.org/id/ENSSSCT00000025386.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021680.1", "url": "https://www.ensembl.org/id/ENSSSCP00000021680.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157365", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157365", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XKL8-1", "protein_name": "C-type lectin domain containing 14A", "gene_name": "CLEC14A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWRWRAGLCCLLLAAVCALDRSPPPSVVRCQPAGACFSAHLANATYDEARRACSSWGGGLAWVSTESDLGVLLALLAEVAAGPALFLVGLKRNASACTDAGQPLRGFSWEERDEAAPREVPAALGRWAKEPVRTCTATRCAGLHLTGADSPRWGWRELPCQRKGQGYACRYRKEDACPELRPDGALSLDYRLPFGKGSAAPGFSPPGTELAVTCPGGEVLLRCRHGPGGFAWEGAEELDCPCKERCAPTPSAAPGAPADRRLSAPAPGGSTGPPSTLPAGRGGTAAPPPFSSSNYVFILVTVAVVVLVILVMTVLGVFKLCFNAKATSGGDKEPAAGGGEAETGGAEPRGAAGAE", "length": 355 }, "evidence": [ { "id": "F1SHL0", "url": "https://omabrowser.org/oma/group/F1SHL0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q642B4-1", "protein_name": "C-type lectin domain family 14 member A", "gene_name": "Clec14a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRPALALCLLCPAFWPRPGNGEHPTADRAVCSVPGACYSLHHAAMKRRAAEEACSLRGGTLSTVQSGSELQAVLKLFRAGPGPGGGSKDLMFWVALERDRSQCTQEREPLRGFSWLYTDSEDSENRTLPWVEEPQLSCTVRKCAVLQATGGVEPAGWKEMRCQQRADGYLCKYQFEALCPAPRPGAASNLSFQAPFRLSSSALDFSPPGTEVSAMCPRDFSVSSICVQEETGARWDGLFPGSLLCPCSGRYLLAGKCVELADCLDYLGNFACECAVGFELGKDKRSCETKAEGQLTLEGTKLPTRNVSATPASPVTNKSWPGQVYDKPGEMPQVTGQDRIATSVPEILQWGTQSTLPTVQTSPQTKPKVTITPSGSMMPTLNFASSPPVSLTFDSSSTVVFVLVSIAVIVLVLLTITVLGLFKLCFHKSPSSRTRKGALDSQGVECDAEATSLRHNSAQCTDTGGKGA", "length": 468 }, "evidence": [ { "id": "F1SHL0", "url": "https://omabrowser.org/oma/group/F1SHL0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86T13-1", "protein_name": "C-type lectin domain family 14 member A", "gene_name": "CLEC14A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPAFALCLLWQALWPGPGGGEHPTADRAGCSASGACYSLHHATMKRQAAEEACILRGGALSTVRAGAELRAVLALLRAGPGPGGGSKDLLFWVALERRRSHCTLENEPLRGFSWLSSDPGGLESDTLQWVEEPQRSCTARRCAVLQATGGVEPAGWKEMRCHLRANGYLCKYQFEVLCPAPRPGAASNLSYRAPFQLHSAALDFSPPGTEVSALCRGQLPISVTCIADEIGARWDKLSGDVLCPCPGRYLRAGKCAELPNCLDDLGGFACECATGFELGKDGRSCVTSGEGQPTLGGTGVPTRRPPATATSPVPQRTWPIRVDEKLGETPLVPEQDNSVTSIPEIPRWGSQSTMSTLQMSLQAESKATITPSGSVISKFNSTTSSATPQAFDSSSAVVFIFVSTAVVVLVILTMTVLGLVKLCFHESPSSQPRKESMGPPGLESDPEPAALGSSSAHCTNNGVKVGDCDLRDRAEGALLAESPLGSSDA", "length": 490 }, "evidence": [ { "id": "F1SHL0", "url": "https://omabrowser.org/oma/group/F1SHL0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VCP9-1", "protein_name": "C-type lectin domain family 14 member A", "gene_name": "Clec14a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRPALALCLLCPAFWPRPGNGEHPTADRAACSASGACYSLHHATFKRRAAEEACSLRGGTLSTVHSGSEFQAVLLLLRAGPGPGGGSKDLLFWVALERSISQCTQEKEPLRGFSWLHPDSEDSEDSPLPWVEEPQRSCTVRKCAALQATRGVEPAGWKEMRCHLRTDGYLCKYQFEVLCPAPRPGAASNLSFQAPFRLSSSALDFSPPGTEVSAMCPGDLSVSSTCIQEETSAHWDGLFPGTVLCPCSGRYLLAGKCVELPDCLDHLGDFTCECAVGFELGKDGRSCETKVEEQLTLEGTKLPTRNVTATPAGAVTNRTWPGQVYDKPGEMPQVTEILQWGTQSTLPTIQKTPQTKPKVTGTPSGSVVLNYTSSPPVSLTFDTSSTVVFILVSIAVIVLVVLTITVLGLFKLCFHKSRSSRTGKGALDSPGVECDAEATSLHHSSTQCTDIGVKSGTVA", "length": 459 }, "evidence": [ { "id": "F1SHL0", "url": "https://omabrowser.org/oma/group/F1SHL0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "extracellular matrix protein binding", "id": "GO:1990430", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990430", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "pmid": "" }, { "name": "extracellular matrix binding", "id": "GO:0050840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050840", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "pmid": "" }, { "name": "vascular endothelial growth factor receptor-2 signaling pathway", "id": "GO:0036324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036324", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "pmid": "" }, { "name": "cell migration involved in sprouting angiogenesis", "id": "GO:0002042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002042", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "pmid": "" }, { "name": "vascular endothelial growth factor receptor-3 signaling pathway", "id": "GO:0036325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036325", "evidence": [ { "database": "UniProtKB", "id": "F1SHL0", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL0" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 163, "start_aa": "Ala", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 190, "end_pos": 192 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 384, "end_pos": 386 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHL6-1", "uniprot_ac": "F1SHL6", "uniprot_id": "F1SHL6_PIG", "mass": { "chemical_mass": 35531.0, "monoisotopic_mass": 35531.0 }, "refseq": { "ac": "XP_013833567", "name": "GRAM domain-containing protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833567" }, "gene_names": [ { "name": "GRAMD2A", "type": "recommended", "evidence": [ { "id": "F1SHL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL6" } ] }, { "name": "GRAMD2A", "type": "synonym", "evidence": [ { "id": "XP_013833567", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833567" } ] } ], "protein_names": [ { "name": "GRAM domain containing 2A", "type": "synonym", "evidence": [ { "id": "F1SHL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL6/entry#names_and_taxonomy" } ] }, { "name": "GRAM domain-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_013833567", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833567" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHL6", "url": "https://www.uniprot.org/uniprotkb/F1SHL6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GRAMD2A", "url": "https://www.uniprot.org/uniprotkb/F1SHL6", "locus": {} } ], "crossref": [ { "id": "F1SHL6", "url": "https://alphafold.ebi.ac.uk/entry/F1SHL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001931", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001931", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13220", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13220", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100158151", "url": "https://www.ncbi.nlm.nih.gov/gene/100158151", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042624", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042624", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SHL6", "url": "https://www.orthodb.org/?gene=F1SHL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46973", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46973", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46973:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46973:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02893", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02893", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013833567", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013833567", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHL6", "url": "https://www.uniprot.org/uniprotkb/F1SHL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAVSRGEAAESCSNQQMHGKTASLKSTEKPGRVQTPPDSSLRWPRALKGEDIKKCSQGGTLLTKYNQQYHKLFKDIPLEEVVLKVCSCALQRDLLLQGRLYISPNWLCFHASLFGKDIKVVIPVVSVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSLSVREFPEEPECESLEVLIPEMKWRKVCPASRSLSLPDNIPCIPRASVDSADGLFPSRKPPGSENAVCEDKLEEEARSDRELRLWDYRLLKIFFVLICFLVMSSSYLAFRISQLEQQLCSLTWDGSVPGHR", "length": 314, "header": "tr|F1SHL6-1|F1SHL6_PIG Isoform 1 of GRAM domain containing 2A OS=Sus scrofa OX=9823 GN=GRAMD2A PE=4 SV=3 CANONICAL=F1SHL6-1" }, "isoforms": [ { "isoform_ac": "F1SHL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SHL6/entry#F1SHL6-1", "sequence": { "sequence": "MTAVSRGEAAESCSNQQMHGKTASLKSTEKPGRVQTPPDSSLRWPRALKGEDIKKCSQGGTLLTKYNQQYHKLFKDIPLEEVVLKVCSCALQRDLLLQGRLYISPNWLCFHASLFGKDIKVVIPVVSVQMIKKHKMARLLPNGLAITTNTSQKYVFVSLLSRDSVYDMLRRVCTHLQPSSKKSLSVREFPEEPECESLEVLIPEMKWRKVCPASRSLSLPDNIPCIPRASVDSADGLFPSRKPPGSENAVCEDKLEEEARSDRELRLWDYRLLKIFFVLICFLVMSSSYLAFRISQLEQQLCSLTWDGSVPGHR", "length": 314, "header": "tr|F1SHL6-1|F1SHL6_PIG Isoform 1 of GRAM domain containing 2A OS=Sus scrofa OX=9823 GN=GRAMD2A PE=4 SV=3 CANONICAL=F1SHL6-1" }, "locus": { "chromosome": "7", "start_pos": 61076616, "end_pos": 61033914, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002162.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002162.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002111.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002111.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHL6", "url": "https://www.uniprot.org/uniprotkb/F1SHL6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "organelle membrane contact site", "id": "GO:0044232", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044232", "evidence": [ { "database": "UniProtKB", "id": "F1SHL6", "url": "https://www.uniprot.org/uniprotkb/F1SHL6" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SHL6", "url": "https://www.uniprot.org/uniprotkb/F1SHL6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidylinositol-4,5-bisphosphate binding", "id": "GO:0005546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005546", "evidence": [ { "database": "UniProtKB", "id": "F1SHL6", "url": "https://www.uniprot.org/uniprotkb/F1SHL6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of store-operated calcium entry", "id": "GO:2001256", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001256", "evidence": [ { "database": "UniProtKB", "id": "F1SHL6", "url": "https://www.uniprot.org/uniprotkb/F1SHL6" } ], "pmid": "" }, { "name": "endoplasmic reticulum-plasma membrane tethering", "id": "GO:0061817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061817", "evidence": [ { "database": "UniProtKB", "id": "F1SHL6", "url": "https://www.uniprot.org/uniprotkb/F1SHL6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHL6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 314, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHL6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHL6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHL6" }, { "id": "SM00568", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00568" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GRAM", "eco_id": "ECO_0000259", "start_pos": 68, "end_pos": 135, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 149, "end_pos": 151 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHM7-1", "uniprot_ac": "F1SHM7", "uniprot_id": "F1SHM7_PIG", "mass": { "chemical_mass": 24888.0, "monoisotopic_mass": 24888.0 }, "refseq": {}, "gene_names": [ { "name": "CLDN8", "type": "recommended", "evidence": [ { "id": "F1SHM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ] } ], "protein_names": [ { "name": "Claudin", "type": "recommended", "evidence": [ { "id": "F1SHM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHM7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Claudins function as major constituents of the tight junction complexes that regulate the permeability of epithelia.", "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7#function" }, { "database": "UniProtKB", "id": "RU060637", "url": "https://www.uniprot.org/uniprotkb/RU060637#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CLDN8", "url": "https://www.uniprot.org/uniprotkb/F1SHM7", "locus": { "chromosome": "13", "start_pos": 193562074, "end_pos": 193564168, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012030", "url": "https://www.ensembl.org/id/ENSSSCG00000012030" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012030", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012030", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NPIVDIA", "url": "https://omabrowser.org/oma/group/NPIVDIA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SHM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASNALQIAGLVLGGVGMVGTVAVTVMPQWRVSAFIGSNIVVFENLWEGLWMNCMRHANIRMQCKIYDSLLALSPDLQASRGLMCTASVLSFLAFMTAILGMKCTRCTGDDEKVKSYILLTAGVLFVLTGFVVLIPVSWVANSIIRDFYNPIVDIAQKRELGEALYIGWTAALVLIAAGALFCCIFCCSERSHSYRYSIPSHRTTQRSYHMEKKSPSVYSRSQYV", "length": 225, "header": "tr|F1SHM7-1|F1SHM7_PIG Isoform 1 of Claudin OS=Sus scrofa OX=9823 GN=CLDN8 PE=3 SV=1 CANONICAL=F1SHM7-1" }, "isoforms": [ { "isoform_ac": "F1SHM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SHM7/entry#F1SHM7-1", "sequence": { "sequence": "MASNALQIAGLVLGGVGMVGTVAVTVMPQWRVSAFIGSNIVVFENLWEGLWMNCMRHANIRMQCKIYDSLLALSPDLQASRGLMCTASVLSFLAFMTAILGMKCTRCTGDDEKVKSYILLTAGVLFVLTGFVVLIPVSWVANSIIRDFYNPIVDIAQKRELGEALYIGWTAALVLIAAGALFCCIFCCSERSHSYRYSIPSHRTTQRSYHMEKKSPSVYSRSQYV", "length": 225, "header": "tr|F1SHM7-1|F1SHM7_PIG Isoform 1 of Claudin OS=Sus scrofa OX=9823 GN=CLDN8 PE=3 SV=1 CANONICAL=F1SHM7-1" }, "locus": { "chromosome": "13", "start_pos": 193564032, "end_pos": 193563358, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013162.3", "url": "https://www.ensembl.org/id/ENSSSCT00000013162.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012812.1", "url": "https://www.ensembl.org/id/ENSSSCP00000012812.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3GT11-1", "protein_name": "Claudin", "gene_name": "Cldn8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MATSVLQMAGLVLGGVGMVGTVAVTIMPQWRVSAFIESNIVVFENLWEGLWMNCMRHANIRMQCKVYDSLLALTPDLQASRGLMCAASVLSFLAFMTAILGMKCTRCTGDEENVKSRILLTAGIVFIVTGLVVLIPVSWVANSIIRDFYNPLVDVAQKRELGEALYIGWTTALVLIAGGMLFSCVFCCTEKRNSYRYSVPSHRTTQRSFHAEKTSPSIYSKSQYV", "length": 225 }, "evidence": [ { "id": "F1SHM7", "url": "https://omabrowser.org/oma/group/F1SHM7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P56748-1", "protein_name": "Claudin-8", "gene_name": "CLDN8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATHALEIAGLFLGGVGMVGTVAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANIRMQCKIYDSLLALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGIIFIITGMVVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGALFCCVFCCNEKSSSYRYSIPSHRTTQKSYHTGKKSPSVYSRSQYV", "length": 225 }, "evidence": [ { "id": "F1SHM7", "url": "https://omabrowser.org/oma/group/F1SHM7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ], "pmid": "" }, { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ], "pmid": "" }, { "name": "apicolateral plasma membrane", "id": "GO:0016327", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016327", "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ], "pmid": "" }, { "name": "paracellular tight junction channel activity", "id": "GO:0160187", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160187", "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "paracellular transport", "id": "GO:0160184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160184", "evidence": [ { "database": "UniProtKB", "id": "F1SHM7", "url": "https://www.uniprot.org/uniprotkb/F1SHM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHN8-1", "uniprot_ac": "F1SHN8", "uniprot_id": "F1SHN8_PIG", "mass": { "chemical_mass": 70402.0, "monoisotopic_mass": 70402.0 }, "refseq": { "ac": "XP_020948193", "name": "proton myo-inositol cotransporter", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948193" }, "gene_names": [ { "name": "SLC2A13", "type": "recommended", "evidence": [ { "id": "F1SHN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ] }, { "name": "SLC2A13", "type": "synonym", "evidence": [ { "id": "XP_020948193", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948193" } ] } ], "protein_names": [ { "name": "Proton myo-inositol cotransporter", "type": "recommended", "evidence": [ { "id": "F1SHN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHN8/entry#names_and_taxonomy" } ] }, { "name": "H(+)-myo-inositol symporter", "type": "synonym", "evidence": [ { "id": "F1SHN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHN8/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 2 member 13", "type": "synonym", "evidence": [ { "id": "F1SHN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHN8/entry#names_and_taxonomy" } ] }, { "name": "proton myo-inositol cotransporter", "type": "synonym", "evidence": [ { "id": "XP_020948193", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948193" } ] } ], "function": [ { "annotation": "H(+)-myo-inositol cotransporter. Can also transport related stereoisomers.", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8#function" }, { "database": "UniProtKB", "id": "ARBA00056971", "url": "https://www.uniprot.org/uniprotkb/ARBA00056971#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC2A13", "url": "https://www.uniprot.org/uniprotkb/F1SHN8", "locus": { "chromosome": "5", "start_pos": 71295008, "end_pos": 71673785, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000783", "url": "https://www.ensembl.org/id/ENSSSCG00000000783" } ] } } ], "crossref": [ { "id": "F1SHN8", "url": "https://alphafold.ebi.ac.uk/entry/F1SHN8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000783", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000783", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17360", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17360", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106504075", "url": "https://www.ncbi.nlm.nih.gov/gene/106504075", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003663", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003663", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005829", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005829", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050814", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050814", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106504075", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504075", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ETGWRWM", "url": "https://omabrowser.org/oma/group/ETGWRWM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHN8", "url": "https://www.orthodb.org/?gene=F1SHN8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48020", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48020", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48020:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48020:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00083", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00083", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-429593", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429593", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020948193", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948193", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "60364", "url": "https://www.rhea-db.org/rhea/60364", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHN8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRKASENVEYTLRSLSSLMGERRRKQQEPDAASAAGERSLLAAAESSASLQGAGAGGGGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVSSTVGAAAVSALAGGALNGAFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPPITLKPVAPLGQNTTCTRYSYCDECMLDPDCGFCYKMNKSAIIDSSCVPVNKASTNEAAWGRCENETKFKTEEIFWAYNFCPTPYSWTALLGLILYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAMGLLFIYGCLPETKGKKLEEIESLFDNRLCTCGASDSDEGRYIEYIRVKGSNYHLSDNDASDVE", "length": 649, "header": "tr|F1SHN8-1|F1SHN8_PIG Isoform 1 of Proton myo-inositol cotransporter OS=Sus scrofa OX=9823 GN=SLC2A13 PE=3 SV=3 CANONICAL=F1SHN8-1" }, "isoforms": [ { "isoform_ac": "F1SHN8-1", "url": "https://www.uniprot.org/uniprotkb/F1SHN8/entry#F1SHN8-1", "sequence": { "sequence": "MSRKASENVEYTLRSLSSLMGERRRKQQEPDAASAAGERSLLAAAESSASLQGAGAGGGGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVSSTVGAAAVSALAGGALNGAFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPPITLKPVAPLGQNTTCTRYSYCDECMLDPDCGFCYKMNKSAIIDSSCVPVNKASTNEAAWGRCENETKFKTEEIFWAYNFCPTPYSWTALLGLILYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAMGLLFIYGCLPETKGKKLEEIESLFDNRLCTCGASDSDEGRYIEYIRVKGSNYHLSDNDASDVE", "length": 649, "header": "tr|F1SHN8-1|F1SHN8_PIG Isoform 1 of Proton myo-inositol cotransporter OS=Sus scrofa OX=9823 GN=SLC2A13 PE=3 SV=3 CANONICAL=F1SHN8-1" }, "locus": { "chromosome": "5", "start_pos": 71673586, "end_pos": 71299957, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000848.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000848.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000831.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000831.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106504075", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106504075", "resource": "KEGG Pathway" }, { "id": "R-SSC-429593", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429593", "resource": "Reactome", "description": "Inositol transporters" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XY55-1", "protein_name": "Proton myo-inositol cotransporter", "gene_name": "SLC2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSRKAGDNVEYTLRSLSNLMGEKRRRQAEGAAGSGAAAAGERSLIAAESCSSLNSAASGAELERAARRQFQRDETPGFVYVVSVFSALGGFLFGYDTGVVSGALLLLKRELNLDALWQELLVSGTVGAAALSALAGGVLNGLCGRRPCILLASGLFTAGAGVLAAARDKETLLGGRVVVGLGIGVASMTVPVYIAEVAPPHLRGRLVTINTLFITGGQFFASVVDGLFSYLVKDGWRYMLGLSAVPAVIQFFGFLFLPESPRWLIQKGQTQRARRILSQMRGNQAIDEEYDSIKNNIEEEEKEVGAAGPVICRMLTYPPTRRALIVGCGLQMFQQLSGINTVMYYSATILQMSGVEDDRLAIWLAALTAFINFIFTLVGVWLVERMGRRKLTLGSLAGTAVALIILASGFLLSAQVSPRVTLNPPDPSHQNSTCTKYSYCNGCMLDPDCGLCYKLNKSSVVESSCIPVDKHSTMKAAWGRCSNETIFKKEDLFWAYNFCPTPYSWTALLGLILYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGVNWVFNVLVSLTFLHTAEYLTYYGAFFLYAGFAGLGLLFIYGCLPETKGKKLEEIESLFESRLCTCGMSDSDEGRYIEYIRVKGSNYHLSDNDASDVE", "length": 646 }, "evidence": [ { "id": "F1SHN8", "url": "https://omabrowser.org/oma/group/F1SHN8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BML6-1", "protein_name": "Proton myo-inositol cotransporter", "gene_name": "SLC2A13", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRKASENVEYTLRSLSSLMGERRRKQQEPDAASTAGERSLLAAAESSASLQGAGAGGGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDAMWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPPITFKPIPPLGQNTTCTRYSYCNECMLDPDCGFCYQMNKSTVIDSSCVPVNKASTNEAAWGRCENETKFKTEEIFWAYNFCPTPYSWTALLGLILYLIFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFASMGLLFIYGCLPETKGKKLEEIESLFDNRLCTCGASDSDEGRYIEYIRVKGSNYHLSDNDASDVE", "length": 648 }, "evidence": [ { "id": "F1SHN8", "url": "https://omabrowser.org/oma/group/F1SHN8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P30606-1", "protein_name": "Myo-inositol transporter 2", "gene_name": "ITR2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MKNSTAASSRWTKSRLSHFFPSYTNSSGMGAASTDQSSTQGEELHHRKHCEEDNDGQKPKKSPVSTSTMQIKSRQDEDEDDGRIVIKPVNDEDDTSVIITFNQSISPFIITLTFVASISGFMFGYDTGYISSALISINRDLDNKVLTYGEKELITAATSLGALITSVGAGTAADVFGRRPCLMFSNLMFLIGAILQITAHKFWQMAAGRLIMGFGVGIGSLISPLFISEIAPKMIRGRLTVINSLWLTGGQLIAYGCGAGLNHVKNGWRILVGLSLIPTVLQFSFFCFLPDTPRYYVMKGDLKRAKMVLKRSYVNTEDEIIDQKVEELSSLNQSIPGKNPITKFWNMVKELHTVPSNFRALIIGCGLQAIQQFTGWNSLMYFSGTIFETVGFKNSSAVSIIVSGTNFVFTLIAFFCIDKIGRRYILLIGLPGMTVALVICAIAFHFLGIKFNGADAVVASDGFSSWGIVIIVFIIVYAAFYALGIGTVPWQQSELFPQNVRGVGTSYATATNWAGSLVIASTFLTMLQNITPTGTFSFFAGVACLSTIFCYFCYPELSGLELEEVQTILKDGFNIKASKALAKKRKQQVAEGAAHHKLKFEPTQEIVES", "length": 609 }, "evidence": [ { "id": "F1SHN8", "url": "https://omabrowser.org/oma/group/F1SHN8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3UHK1-1", "protein_name": "Proton myo-inositol cotransporter", "gene_name": "Slc2a13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRKASEDVEYTLRSLSSLMGERRRRQPEPGAPGGERSLLAAESAASLQGAELERAARRQFQRDETPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEATAAGPIICRMLSYPPTRRALVVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFLLSAQVSPRVTFRPTTPSDQNTTCTGYSYCNECMLDPDCGFCYKINGSAVIDSSCVPVNKASTTEAAWGRCDNETKFKAEGAHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGKKLEEIESLFDHRLCSCGAADSDEGRYIEYIRVKGSNYHLSDNDASDVE", "length": 637 }, "evidence": [ { "id": "F1SHN8", "url": "https://omabrowser.org/oma/group/F1SHN8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VZR6-1", "protein_name": "Inositol transporter 1", "gene_name": "INT1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTLTIPNAPGSSGYLDMFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLVSTNVLMITGGQFLSYLVNSAFTQVPGTWRWMLGVSGVPAVIQFILMLFMPESPRWLFMKNRKAEAIQVLARTYDISRLEDEIDHLSAAEEEEKQRKRTVGYLDVFRSKELRLAFLAGAGLQAFQQFTGINTVMYYSPTIVQMAGFHSNQLALFLSLIVAAMNAAGTVVGIYFIDHCGRKKLALSSLFGVIISLLILSVSFFKQSETSSDGGLYGWLAVLGLALYIVFFAPGMGPVPWTVNSEIYPQQYRGICGGMSATVNWISNLIVAQTFLTIAEAAGTGMTFLILAGIAVLAVIFVIVFVPETQGLTFSEVEQIWKERAYGNISGWGSSSDSNNMEGLLEQGSQS", "length": 509 }, "evidence": [ { "id": "F1SHN8", "url": "https://omabrowser.org/oma/group/F1SHN8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q921A2-1", "protein_name": "Proton myo-inositol cotransporter", "gene_name": "Slc2a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRKASEDVEYTLRSLSSLMGERRRRQPEPGAPGGERSLLAAESAASLQGAELERAARRQFQRDETPAFVYAAAAFSALGGFLFGYDTGVVSGAMLLLRRQMRLGAMWQELLVSGAVGAAAVAALAGGALNGALGRRSAILLASALCTVGSAVLAAAANKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAIPAVIQFLGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIRNSIEEEEKEASAAGPIICRMLSYPPTRRALAVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASITAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALTILALGFLLSAQVSPRVTFRPTAPSGQNATCTEYSYCNECMLDPDCGFCYKINSSAVIDSSCVPVNKASTNEAAWGRCENETKFKAEDVHWAYSFCPTPYSWTALVGLVLYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSAGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFVYGCLPETKGKKLEEIESLFDHRLCTCGTADSDEGRYIEYIRVKGSNYHLSDNDASDVE", "length": 637 }, "evidence": [ { "id": "F1SHN8", "url": "https://omabrowser.org/oma/group/F1SHN8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96QE2-1", "protein_name": "Proton myo-inositol cotransporter", "gene_name": "SLC2A13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRKASENVEYTLRSLSSLMGERRRKQPEPDAASAAGECSLLAAAESSTSLQSAGAGGGGVGDLERAARRQFQQDETPAFVYVVAVFSALGGFLFGYDTGVVSGAMLLLKRQLSLDALWQELLVSSTVGAAAVSALAGGALNGVFGRRAAILLASALFTAGSAVLAAANNKETLLAGRLVVGLGIGIASMTVPVYIAEVSPPNLRGRLVTINTLFITGGQFFASVVDGAFSYLQKDGWRYMLGLAAVPAVIQFFGFLFLPESPRWLIQKGQTQKARRILSQMRGNQTIDEEYDSIKNNIEEEEKEVGSAGPVICRMLSYPPTRRALIVGCGLQMFQQLSGINTIMYYSATILQMSGVEDDRLAIWLASVTAFTNFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALIILALGFVLSAQVSPRITFKPIAPSGQNATCTRYSYCNECMLDPDCGFCYKMNKSTVIDSSCVPVNKASTNEAAWGRCENETKFKTEDIFWAYNFCPTPYSWTALLGLILYLVFFAPGMGPMPWTVNSEIYPLWARSTGNACSSGINWIFNVLVSLTFLHTAEYLTYYGAFFLYAGFAAVGLLFIYGCLPETKGKKLEEIESLFDNRLCTCGTSDSDEGRYIEYIRVKGSNYHLSDNDASDVE", "length": 648 }, "evidence": [ { "id": "F1SHN8", "url": "https://omabrowser.org/oma/group/F1SHN8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protease binding", "id": "GO:0002020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002020", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" }, { "name": "ATPase binding", "id": "GO:0051117", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051117", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" }, { "name": "myo-inositol:proton symporter activity", "id": "GO:0005366", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005366", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" }, { "name": "positive regulation of amyloid-beta formation", "id": "GO:1902004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902004", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" }, { "name": "myo-inositol transport", "id": "GO:0015798", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015798", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" }, { "name": "cell body", "id": "GO:0044297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044297", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" }, { "name": "organelle membrane", "id": "GO:0031090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031090", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" }, { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "F1SHN8", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 459, "end_pos": 461, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "60364", "name": "", "equation": "myo-inositol(out) + H(+)(out) = myo-inositol(in) + H(+)(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "60364", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60364" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHN8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 649, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHN8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHN8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHN8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHN8" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 85, "end_pos": 599, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 286, "end_pos": 288 }, { "start_pos": 434, "end_pos": 436 }, { "start_pos": 459, "end_pos": 461 }, { "start_pos": 486, "end_pos": 488 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHP9-1", "uniprot_ac": "F1SHP9", "uniprot_id": "F1SHP9_PIG", "mass": { "chemical_mass": 30479.0, "monoisotopic_mass": 30479.0 }, "refseq": { "ac": "XP_003483391", "name": "chondrolectin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483391" }, "gene_names": [ { "name": "CHODL", "type": "recommended", "evidence": [ { "id": "F1SHP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHP9" } ] }, { "name": "CHODL", "type": "synonym", "evidence": [ { "id": "XP_003483391", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483391" } ] } ], "protein_names": [ { "name": "Chondrolectin", "type": "synonym", "evidence": [ { "id": "F1SHP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHP9/entry#names_and_taxonomy" } ] }, { "name": "chondrolectin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003483391", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483391" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHP9", "url": "https://www.uniprot.org/uniprotkb/F1SHP9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHODL", "url": "https://www.uniprot.org/uniprotkb/F1SHP9", "locus": { "chromosome": "13", "start_pos": 182826753, "end_pos": 182461757, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012018", "url": "https://www.ensembl.org/id/ENSSSCG00000012018" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012018", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012018", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520642", "url": "https://www.ncbi.nlm.nih.gov/gene/100520642", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520642", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520642", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FICKYKS", "url": "https://omabrowser.org/oma/group/FICKYKS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHP9", "url": "https://www.orthodb.org/?gene=F1SHP9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14789", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14789", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14789:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14789:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483391", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483391", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHP9", "url": "https://www.uniprot.org/uniprotkb/F1SHP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHP9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GQJ7", "url": "https://www.uniprot.org/uniprotkb/K7GQJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GQJ7-1", "url": "https://www.uniprot.org/uniprotkb/K7GQJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRVISLLLGAALLCGHGAFGRRVVSGQKVCFADVKHPCYKMAYFHELSSRVSFQEARQACESEDGALLSLENEAEQKLIESMLQNLSKPGTGISDGDFWIGLWRNGEGHTSGACPDLYQWSDGSSSQYRNWYTDEPSCGSEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYEPEIYPTAPVEKTYFTNQPGDTHQNVVVTEAGIIPNLIYVIIPTIPLLLLILVAFGTCCFQMLHKSKGRTKTSPNQSTLWISKSTRKESGMEV", "length": 273, "header": "tr|F1SHP9-1|F1SHP9_PIG Isoform 1 of Chondrolectin OS=Sus scrofa OX=9823 GN=CHODL PE=4 SV=5 CANONICAL=F1SHP9-1" }, "isoforms": [ { "isoform_ac": "F1SHP9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHP9/entry#F1SHP9-1", "sequence": { "sequence": "MSRVISLLLGAALLCGHGAFGRRVVSGQKVCFADVKHPCYKMAYFHELSSRVSFQEARQACESEDGALLSLENEAEQKLIESMLQNLSKPGTGISDGDFWIGLWRNGEGHTSGACPDLYQWSDGSSSQYRNWYTDEPSCGSEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYEPEIYPTAPVEKTYFTNQPGDTHQNVVVTEAGIIPNLIYVIIPTIPLLLLILVAFGTCCFQMLHKSKGRTKTSPNQSTLWISKSTRKESGMEV", "length": 273, "header": "tr|F1SHP9-1|F1SHP9_PIG Isoform 1 of Chondrolectin OS=Sus scrofa OX=9823 GN=CHODL PE=4 SV=5 CANONICAL=F1SHP9-1" }, "locus": { "chromosome": "13", "start_pos": 182825427, "end_pos": 182805034, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013149.6", "url": "https://www.ensembl.org/id/ENSSSCT00000013149.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012800.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012800.5" } ] } }, { "isoform_ac": "K7GQJ7-1", "url": "https://www.uniprot.org/uniprotkb/F1SHP9/entry#K7GQJ7-1", "sequence": { "sequence": "MAYFHELSSRVSFQEARQACESEDGALLSLENEAEQKLIESMLQNLSKPGTGISDGDFWIGLWRNGEGHTSGACPDLYQWSDGSSSQYRNWYTDEPSCGSEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYEPEIYPTAPVEKTYFTNQPGDTHQNVVVTEAVKEEQKLAQISPHCGFQKAPEKKVAWKYKTSLTWLQNRKSFVILDLNTEWHQNLSLEWLEISKDLQVEL", "length": 239, "header": "tr|K7GQJ7-1|F1SHP9_PIG Computationally mapped isoform of Chondrolectin OS=Sus scrofa OX=9823 GN=CHODL PE=4 SV=3 CANONICAL=F1SHP9-1" }, "locus": { "chromosome": "13", "start_pos": 182825554, "end_pos": 182815067, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000034102.4", "url": "https://www.ensembl.org/id/ENSSSCT00000034102.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000030167.3", "url": "https://www.ensembl.org/id/ENSSSCP00000030167.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GQJ7", "url": "https://www.uniprot.org/uniprotkb/K7GQJ7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520642", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520642", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XNQ7-1", "protein_name": "Chondrolectin", "gene_name": "CHODL", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGLGLGLAAVLAVAALYGSGALGGRVLSGQKVCYGGFKRSCYKIAYFQDLSRRVGFQEARQACEMDGGALLSLESEAEQRLIENMLQNLTKSGSGISDGDFWIGLWRSSDGLATSSACPDLYHWADGSISPFRNWYTDEPSCGSEACVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNFICKYGPDNVLEKELGDRAEPDYGIFPTVPAGNPYDTNKPEDQYHVIATETVKEEQKRVRTSPHFGFQRPLGRTVAWRLTSETEVGDTAIKAEHSHRYSVTFCCMRQMAAEEHSDRMVSNMEVWMKQRSVTEFFHVEKMSPTDIH", "length": 323 }, "evidence": [ { "id": "F1SHP9", "url": "https://omabrowser.org/oma/group/F1SHP9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0L9J7-1", "protein_name": "Chondrolectin", "gene_name": "Chodl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIRFASLLLGAALLCAQGAFARRVVSGQKVCFADVKHPCYKMAYFHELSSRVSFQEARLACESEGGVLLSLENEAEQKLIESMLQNLTKPGTGISDGDFWIGLLRSGDGQTSGACPDLYQWSDGSSSQFRNWYTDEPSCGSEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYEPEIHPTEPVEKPYLTNQPEDTHENVVVTEAGIIPNLIYVIIPTIPLLLLILVAFGTCCFQMLHKSKGRTKTSPNQSTLWISKSTRKESGMEV", "length": 273 }, "evidence": [ { "id": "F1SHP9", "url": "https://omabrowser.org/oma/group/F1SHP9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CXM0-1", "protein_name": "Chondrolectin", "gene_name": "Chodl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIRIASLLLGAALLCAQGAFARRVVSGQKVCFADVKHPCYKMAYFHELSSRVSFQEARLACESEGGVLLSLENEAEQKLIESMLQNLTKPGTGISDGDFWIGLLRSGDGQTSGACPDLYQWSDGSSSQFRNWYTDEPSCGSEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYEPEIHPTEPAEKPYLTNQPEETHENVVVTEAGIIPNLIYVIIPTIPLLLLILVALGTCCFQMLHKSKGRSKTSPNQSTLWISKSTRKESGMEV", "length": 273 }, "evidence": [ { "id": "F1SHP9", "url": "https://omabrowser.org/oma/group/F1SHP9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H9P2-1", "protein_name": "Chondrolectin", "gene_name": "CHODL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRVVSLLLGAALLCGHGAFCRRVVSGQKVCFADFKHPCYKMAYFHELSSRVSFQEARLACESEGGVLLSLENEAEQKLIESMLQNLTKPGTGISDGDFWIGLWRNGDGQTSGACPDLYQWSDGSNSQYRNWYTDEPSCGSEKCVVMYHQPTANPGLGGPYLYQWNDDRCNMKHNYICKYEPEINPTAPVEKPYLTNQPGDTHQNVVVTEAGIIPNLIYVVIPTIPLLLLILVAFGTCCFQMLHKSKGRTKTSPNQSTLWISKSTRKESGMEV", "length": 273 }, "evidence": [ { "id": "F1SHP9", "url": "https://omabrowser.org/oma/group/F1SHP9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SHP9", "url": "https://www.uniprot.org/uniprotkb/F1SHP9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SHP9", "url": "https://www.uniprot.org/uniprotkb/F1SHP9" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1SHP9", "url": "https://www.uniprot.org/uniprotkb/F1SHP9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1SHP9", "url": "https://www.uniprot.org/uniprotkb/F1SHP9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of axonogenesis", "id": "GO:0050772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050772", "evidence": [ { "database": "UniProtKB", "id": "F1SHP9", "url": "https://www.uniprot.org/uniprotkb/F1SHP9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHP9" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 179, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 255, "end_pos": 257 }, { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHR9-1", "uniprot_ac": "F1SHR9", "uniprot_id": "F1SHR9_PIG", "mass": { "chemical_mass": 41016.0, "monoisotopic_mass": 41016.0 }, "refseq": { "ac": "XP_013853362", "name": "leucine-rich repeat and transmembrane domain-containing protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853362" }, "gene_names": [ { "name": "LRTM2", "type": "recommended", "evidence": [ { "id": "F1SHR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHR9" } ] }, { "name": "LRTM2", "type": "synonym", "evidence": [ { "id": "XP_013853362", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853362" } ] } ], "protein_names": [ { "name": "Leucine rich repeats and transmembrane domains 2", "type": "synonym", "evidence": [ { "id": "F1SHR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHR9/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat and transmembrane domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "XP_013853362", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853362" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHR9", "url": "https://www.uniprot.org/uniprotkb/F1SHR9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRTM2", "url": "https://www.uniprot.org/uniprotkb/F1SHR9", "locus": { "chromosome": "5", "start_pos": 68836514, "end_pos": 68822539, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000760", "url": "https://www.ensembl.org/id/ENSSSCG00000000760" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000760", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000760", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514647", "url": "https://www.ncbi.nlm.nih.gov/gene/100514647", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514647", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514647", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QISWIAC", "url": "https://omabrowser.org/oma/group/QISWIAC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHR9", "url": "https://www.orthodb.org/?gene=F1SHR9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF175", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF175", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12799", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12799", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013853362", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853362", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHR9", "url": "https://www.uniprot.org/uniprotkb/F1SHR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHR9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHR9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAPGSSPKPRTRLVLQWKPISWLTYWIALCAAEALPACPFSCSCDSRSLEVDCSGLGLTVVPPDVPAATRTLLLQNNRLSSLPSWAFANLSSLQRLDLSNNFLDRLPRAAFGDLANLTELQLRNNSLRALDPELLRHLPRLRHLDLSLNGLARLPPGLFDGLPALRSLSLRANRLQSLDRLTFEPLASLQLLQVGDNPWECDCHLRDFKHWLEWFSYRGGRLDQLACTLPKELRGKDMRVVPMEMFNYCSQLEDENSSAGLEVPGPPCTKASLEPAKPKPGPEPEPEPSTACPQKQRPRPVSVRRAIGTVIIAGVVCGIVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA", "length": 370, "header": "tr|F1SHR9-1|F1SHR9_PIG Isoform 1 of Leucine rich repeats and transmembrane domains 2 OS=Sus scrofa OX=9823 GN=LRTM2 PE=1 SV=3 CANONICAL=F1SHR9-1" }, "isoforms": [ { "isoform_ac": "F1SHR9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHR9/entry#F1SHR9-1", "sequence": { "sequence": "MLAPGSSPKPRTRLVLQWKPISWLTYWIALCAAEALPACPFSCSCDSRSLEVDCSGLGLTVVPPDVPAATRTLLLQNNRLSSLPSWAFANLSSLQRLDLSNNFLDRLPRAAFGDLANLTELQLRNNSLRALDPELLRHLPRLRHLDLSLNGLARLPPGLFDGLPALRSLSLRANRLQSLDRLTFEPLASLQLLQVGDNPWECDCHLRDFKHWLEWFSYRGGRLDQLACTLPKELRGKDMRVVPMEMFNYCSQLEDENSSAGLEVPGPPCTKASLEPAKPKPGPEPEPEPSTACPQKQRPRPVSVRRAIGTVIIAGVVCGIVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA", "length": 370, "header": "tr|F1SHR9-1|F1SHR9_PIG Isoform 1 of Leucine rich repeats and transmembrane domains 2 OS=Sus scrofa OX=9823 GN=LRTM2 PE=1 SV=3 CANONICAL=F1SHR9-1" }, "locus": { "chromosome": "5", "start_pos": 68834827, "end_pos": 68829161, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000824.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000824.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000808.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000808.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHR9", "url": "https://www.uniprot.org/uniprotkb/F1SHR9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514647", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514647", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9Q6C3-1", "protein_name": "Leucine-rich repeat and transmembrane domain-containing protein 2", "gene_name": "lrtm2a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MQLCTAPTVGRRRRGNPDSQGFLGVLSVCATLLQLCAGCPSECVCNSLEANCSGRSLVSVPALTSLPEGTHTLLLANNRLSSLPLSAFANLSTLETLDLSNNYLDNLPSRLFRELSNLSELSLRNNSLTVLDRELFRGLTHLRKLDLSLNGLAAVPLGLLDELQQLTWLSLAGNRLHALERATFEPLVNLQHLELGMNPWECDCNLRDFKHWMEWLIYRGGYVDAVECTLPKDLRGRDIRGVPVEMFNYCLQLEDENGGGTGSTKGGSPPCFRGTAAPSSDSAVVRTEAELPDCVKQRYRPVSVRRAIGTVVIAGVVCGIVCIMMVAAAAYGCIYASLMAKYQRELKKRQPLMGDAEAETDPEEKQISSVA", "length": 371 }, "evidence": [ { "id": "F1SHR9", "url": "https://omabrowser.org/oma/group/F1SHR9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0YUW0-1", "protein_name": "Leucine rich repeats and transmembrane domains 2", "gene_name": "LRTM2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MYPQPRAQPPSPPARSLSLCSLLAGDYSSFPTLPAERAAPRPHVWCGQPGCWPPSPCQLEPSERLPGEKARSAGFALGLPRVRWKSPVSQRSVRPRAGGQAWRSLRTPGLSTGLTGGCEGALERTKMLPMSASHQWRSRSLMRWQEACLLGCWLSLCAAESFFACPSSCKCNSGILEVDCSGLGLSSIPSDIPTNTRTFLFLNNKLSILPGPVFSNLSALQRLDLSNNFLDQLPQNIFSDLGNLTELQLRNNSIRALDKDLLQHTALLRQLDLSINGLAQIPSGIFDDLPALRSLSLRSNRLQSLDRVTFEPLTSLQQLQVGDNPWECDCNLRDFKHWMEWFSYRGGKIDQLACTLPKELKGKDMRMVPMEMFNYCSQLDDENSSTVLDNTGPPCTKGSPTPSKTKSGPEPEVEPSVGCPQKQRYRPVSVRRAIGTVIIAGVVCGIVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDTEGEHEEQKQISSVA", "length": 496 }, "evidence": [ { "id": "F1SHR9", "url": "https://omabrowser.org/oma/group/F1SHR9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZPP7-1", "protein_name": "Leucine-rich repeats and transmembrane domains 2", "gene_name": "Lrtm2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLAPGGGPEQRSKLVLQWRQLSWITCWIALCAVEVLPACPFSCTCDSRSLEVDCSGLGLTTVPPDVPAATQSLLLLNNKLSALPSWAFANLSSLQRLDLSNNFLDQLPRSVFQDLVNLTELQLRNNSIRTLDRDLLQHSPRLRHLDLSINGLAQLPQGLFDGLLALRSLSLRSNRLQSLDRLTFEPLASLQLLQVGDNPWECDCNLREFKHWLEWFSYRGGRLDQLACTLPKELRGKDMRAVPMEMFNYCSQLEDENSAGLDAPGPPCTKASPEPPKPKPGAEPEPEPSTACPQKQRYRPVSVRRAIGTVIIAGVVCGIVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA", "length": 369 }, "evidence": [ { "id": "F1SHR9", "url": "https://omabrowser.org/oma/group/F1SHR9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BKY5-1", "protein_name": "Leucine rich repeats and transmembrane domains 2", "gene_name": "LRTM2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLAPGGSPEPRGTKGHTWLALWRRISWLACWIALCTAEAVPACPFPCTCDGRGLQVDCSGLGLTAPPPDLPAATRSLLLLNNRLSSLPGGAFANLSGLQRLDLSNNFLDRLPRMAFGDLANLTELQLRNNSLRALDATLLRPLPRLRHLDLSLNGLSRLPPGLFDGLPALRSLSLRANRLQSLDRRTFEPLAGLQLLQVADNPWECDCHLRDFKRWLEWFSYRGGRLDQLACTLPKELRGKDMRMVPMEMFNYCSQLEDQNSSAGQEVSGPPCTKASPEPAKPKPGPEPEPEPSTACPQKQRPRPVSVRRAIGTVIIAGVVCGVVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEQEDQKQISSVA", "length": 374 }, "evidence": [ { "id": "F1SHR9", "url": "https://omabrowser.org/oma/group/F1SHR9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BGX3-1", "protein_name": "Leucine-rich repeat and transmembrane domain-containing protein 2", "gene_name": "Lrtm2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLAPGGGPEQRSKLVLQWRQVSWITCWIALCAVEVIPACPFSCTCDSRSLEVDCSGLGLTTVPPDVPAATQSLLLLNNKLSALPSWAFANLSNLQRLDLSNNFLDQLPRSIFEDLVNLTELQLRNNSIRTLDRDLLQHSPLLRHLDLSINGLAQLPPGLFDGLLALRSLSLRSNRLQSLDRLTFEPLASLQLLQVGDNPWECDCNLREFKHWLEWFSYRGGRLDQLACTLPKELRGKDMRAVPMEMFNYCSQLEDENNSAGLDAPGPPCTKASPEPPKPKPGAEPEPEPSTACPQKQRYRPVSVRRAIGTVIIAGVVCGIVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA", "length": 370 }, "evidence": [ { "id": "F1SHR9", "url": "https://omabrowser.org/oma/group/F1SHR9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N967-1", "protein_name": "Leucine-rich repeat and transmembrane domain-containing protein 2", "gene_name": "LRTM2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLAPGSSPGQRGRLALQWRQVSWITCWIALYAVEALPTCPFSCKCDSRSLEVDCSGLGLTTVPPDVPAATRTLLLLNNKLSALPSWAFANLSSLQRLDLSNNFLDRLPRSIFGDLTNLTELQLRNNSIRTLDRDLLRHSPLLRHLDLSINGLAQLPPGLFDGLLALRSLSLRSNRLQNLDRLTFEPLANLQLLQVGDNPWECDCNLREFKHWMEWFSYRGGRLDQLACTLPKELRGKDMRMVPMEMFNYCSQLEDENSSAGLDIPGPPCTKASPEPAKPKPGAEPEPEPSTACPQKQRHRPASVRRAMGTVIIAGVVCGVVCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA", "length": 370 }, "evidence": [ { "id": "F1SHR9", "url": "https://omabrowser.org/oma/group/F1SHR9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SHR9", "url": "https://www.uniprot.org/uniprotkb/F1SHR9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "F1SHR9", "url": "https://www.uniprot.org/uniprotkb/F1SHR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" }, { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHR9" }, { "id": "SM00082", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00082" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRCT", "eco_id": "ECO_0000259", "start_pos": 198, "end_pos": 251, "start_aa": "Asn", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHR9" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 72, "start_aa": "Ala", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 }, { "start_pos": 125, "end_pos": 127 }, { "start_pos": 257, "end_pos": 259 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHT2-1", "uniprot_ac": "F1SHT2", "uniprot_id": "F1SHT2_PIG", "mass": { "chemical_mass": 35252.0, "monoisotopic_mass": 35252.0 }, "refseq": { "ac": "XP_003134889", "name": "homeobox protein Hox-A4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134889" }, "gene_names": [ { "name": "HOXA4", "type": "recommended", "evidence": [ { "id": "F1SHT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ] }, { "name": "HOXA4", "type": "synonym", "evidence": [ { "id": "XP_003134889", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134889" } ] } ], "protein_names": [ { "name": "Homeobox A4", "type": "synonym", "evidence": [ { "id": "F1SHT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHT2/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein Hox-A4", "type": "synonym", "evidence": [ { "id": "XP_003134889", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134889" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HOXA4", "url": "https://www.uniprot.org/uniprotkb/F1SHT2", "locus": {} } ], "crossref": [ { "id": "F1SHT2", "url": "https://alphafold.ebi.ac.uk/entry/F1SHT2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016704", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016704", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519635", "url": "https://www.ncbi.nlm.nih.gov/gene/100519635", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017995", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017995", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519635", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519635", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SHT2", "url": "https://www.orthodb.org/?gene=F1SHT2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45771", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45771", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45771:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45771:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134889", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134889", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHT2-1", "url": "https://www.uniprot.org/uniprotkb/F1SHT2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTMSSFLINSNYIEPKFPPFEEYAQHSGPGGGDGGPGGGPGYQQPPAPAAQHLPPQQPQLPHTGGGREPPASYYAPRAAREPSYPAAALYPAHGAADAAYPYGYRGGASPGRPPQSEQPPAHAKGPAHGLHATHVLPPGRQPPPPPPPPPPQHRAAAPAPPRRCQAAPATPGVPAGGSAPACPLLLADKSPAGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKPQTQSPHPHPHPHPHQGASTPIPSSI", "length": 329, "header": "tr|F1SHT2-1|F1SHT2_PIG Isoform 1 of Homeobox A4 OS=Sus scrofa OX=9823 GN=HOXA4 PE=3 SV=3 CANONICAL=F1SHT2-1" }, "isoforms": [ { "isoform_ac": "F1SHT2-1", "url": "https://www.uniprot.org/uniprotkb/F1SHT2/entry#F1SHT2-1", "sequence": { "sequence": "MTMSSFLINSNYIEPKFPPFEEYAQHSGPGGGDGGPGGGPGYQQPPAPAAQHLPPQQPQLPHTGGGREPPASYYAPRAAREPSYPAAALYPAHGAADAAYPYGYRGGASPGRPPQSEQPPAHAKGPAHGLHATHVLPPGRQPPPPPPPPPPQHRAAAPAPPRRCQAAPATPGVPAGGSAPACPLLLADKSPAGLKGKEPVVYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASASAGPPGKPQTQSPHPHPHPHPHQGASTPIPSSI", "length": 329, "header": "tr|F1SHT2-1|F1SHT2_PIG Isoform 1 of Homeobox A4 OS=Sus scrofa OX=9823 GN=HOXA4 PE=3 SV=3 CANONICAL=F1SHT2-1" }, "locus": { "chromosome": "18", "start_pos": 45444945, "end_pos": 45443407, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018185.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018185.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017694.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017694.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 170, "start_aa": "Thr", "end_pos": 170, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr170", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519635", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519635", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ], "pmid": "" }, { "name": "anterior/posterior pattern specification", "id": "GO:0009952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009952", "evidence": [ { "database": "UniProtKB", "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ], "pmid": "" }, { "name": "embryonic skeletal system morphogenesis", "id": "GO:0048704", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048704", "evidence": [ { "database": "UniProtKB", "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SHT2", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHT2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 329, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHT2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHT2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHT2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHT2" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 220, "end_pos": 280, "start_aa": "Gly", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 170 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHT9-1", "uniprot_ac": "F1SHT9", "uniprot_id": "F1SHT9_PIG", "mass": { "chemical_mass": 42397.0, "monoisotopic_mass": 42397.0 }, "refseq": { "ac": "XP_003134882", "name": "homeobox even-skipped homolog protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134882" }, "gene_names": [ { "name": "EVX1", "type": "recommended", "evidence": [ { "id": "F1SHT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" } ] }, { "name": "EVX1", "type": "synonym", "evidence": [ { "id": "XP_003134882", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134882" } ] } ], "protein_names": [ { "name": "Homeobox even-skipped homolog protein 1", "type": "recommended", "evidence": [ { "id": "F1SHT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHT9/entry#names_and_taxonomy" } ] }, { "name": "EVX-1", "type": "synonym", "evidence": [ { "id": "F1SHT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHT9/entry#names_and_taxonomy" } ] }, { "name": "homeobox even-skipped homolog protein 1", "type": "synonym", "evidence": [ { "id": "XP_003134882", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134882" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHT9", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EVX1", "url": "https://www.uniprot.org/uniprotkb/F1SHT9", "locus": { "chromosome": "18", "start_pos": 45326710, "end_pos": 45331368, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016696", "url": "https://www.ensembl.org/id/ENSSSCG00000016696" } ] } } ], "crossref": [ { "id": "F1SHT9", "url": "https://alphafold.ebi.ac.uk/entry/F1SHT9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016696", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016696", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518282", "url": "https://www.ncbi.nlm.nih.gov/gene/100518282", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052002", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052002", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518282", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518282", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NCISPRP", "url": "https://omabrowser.org/oma/group/NCISPRP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHT9", "url": "https://www.orthodb.org/?gene=F1SHT9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46294", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46294", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46294:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46294:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134882", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134882", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHT9", "url": "https://www.uniprot.org/uniprotkb/F1SHT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHT9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHT9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESRKDMVMFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRSCLSPRAGPPAARERGGGGLEEEPVDGLAGSAAGPGAESRAAGAAVLGPGPPAASADSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHSKGPGSEALASSPNGSSEAPKSNGSGGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPFSGPLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGTAAGGPCSCLACHGGPANGLAPRAAAAAAASDFTCASTSRSDSFLTFAPSVLSKASSVALDQREEVPLTR", "length": 407, "header": "tr|F1SHT9-1|F1SHT9_PIG Isoform 1 of Homeobox even-skipped homolog protein 1 OS=Sus scrofa OX=9823 GN=EVX1 PE=3 SV=1 CANONICAL=F1SHT9-1" }, "isoforms": [ { "isoform_ac": "F1SHT9-1", "url": "https://www.uniprot.org/uniprotkb/F1SHT9/entry#F1SHT9-1", "sequence": { "sequence": "MESRKDMVMFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRSCLSPRAGPPAARERGGGGLEEEPVDGLAGSAAGPGAESRAAGAAVLGPGPPAASADSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHSKGPGSEALASSPNGSSEAPKSNGSGGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPFSGPLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGTAAGGPCSCLACHGGPANGLAPRAAAAAAASDFTCASTSRSDSFLTFAPSVLSKASSVALDQREEVPLTR", "length": 407, "header": "tr|F1SHT9-1|F1SHT9_PIG Isoform 1 of Homeobox even-skipped homolog protein 1 OS=Sus scrofa OX=9823 GN=EVX1 PE=3 SV=1 CANONICAL=F1SHT9-1" }, "locus": { "chromosome": "18", "start_pos": 45331169, "end_pos": 45327714, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018177.3", "url": "https://www.ensembl.org/id/ENSSSCT00000018177.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017686.1", "url": "https://www.ensembl.org/id/ENSSSCP00000017686.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHT9", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518282", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518282", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X641-1", "protein_name": "Even-skipped homeobox 1", "gene_name": "EVX1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MESRKEMVMFLEGTQLGALVGKRVPNLTETVRSPAPEPQEKMIPRNCLSPRPGPLSSRERGGGGGGGGGEDEEEVEVLPGTGTVPESRSAAAALLGAGQQPPGTEPPSSKGQQSSSDTESDFYEEIEVSCTPDCATGSAEYQHSKGPCPEARAGSPGGGGDHPKGGGGGGGGGGSQGPLSCSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAATGNLPYPFPSHLPLPYYSHMGIGATSASAAAPFSTPLRPLDTFRVLSHPYPRPELLCAFRHPSLYPAPSHGLGSAGGSPCSCLACHGSPSNGLAQRSAGSDFTCSATTRTDSFLTFTPSVLSKATSVSIDQREEVPLTR", "length": 408 }, "evidence": [ { "id": "F1SHT9", "url": "https://omabrowser.org/oma/group/F1SHT9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BEL0-1", "protein_name": "Homeobox even-skipped homolog protein 1", "gene_name": "EVX1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESRKDMVMFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAGPPAARERGGGGLEEEPVDGLAGSAAGPGAESRAAGAAVLGPGPPAASADSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHSKGPGSEALASSPNGSSETSKSNGSGGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPFSGPLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGTAAGGPCSCLACHGGPANGLAPRAAAASDFTCASTSRSDSFLSFAPSVLSKASSVALDQREEVPLTR", "length": 404 }, "evidence": [ { "id": "F1SHT9", "url": "https://omabrowser.org/oma/group/F1SHT9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1LQ30-1", "protein_name": "Homeobox even-skipped homolog protein 1", "gene_name": "Evx1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESRKDMVMFLDGGQLGSLVGKRVSNLSEAVSSPLPEPPEKMVPHGCLSPRAGPPTSRERGGGGQEEEPVDGLAGSAAGLGAEPRSAGAAMLGPGPPVPSADSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHSKAPDSDALGSSPNSGSEAPKSNGGSGGSGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPFSGPLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGASAGGPCSCLACHSGPSNGLAPRAAAASDFTCASTSRSDSFLTFAPSVLSKASSVALDQREEVPLTR", "length": 407 }, "evidence": [ { "id": "F1SHT9", "url": "https://omabrowser.org/oma/group/F1SHT9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23683-1", "protein_name": "Homeobox even-skipped homolog protein 1", "gene_name": "Evx1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESRKDMVMFLDGGQLGTLVGKRVSNLSEAVSSPLPEPPEKMVPHGCLSPRAGPPTSRERGGGGQEEEPVDGLAGSAAGLGAEPRSAGAAMLGPGPPVPSADSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHSKAPGSDALGSSPTSGSEAPKSNGGSGGSGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPFSGPLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGASAAAAAAAGPCSCLACHSGPANGLAPRAAAAAAASDFTCASTSRSDSFLTFAPSVLSKASSVAALDQREEVPLTR", "length": 416 }, "evidence": [ { "id": "F1SHT9", "url": "https://omabrowser.org/oma/group/F1SHT9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P49640-1", "protein_name": "Homeobox even-skipped homolog protein 1", "gene_name": "EVX1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESRKDMVVFLDGGQLGTLVGKRVSNLSEAVGSPLPEPPEKMVPRGCLSPRAVPPATRERGGGGPEEEPVDGLAGSAAGPGAEPQVAGAAMLGPGPPAPSVDSLSGQGQPSSSDTESDFYEEIEVSCTPDCATGNAEYQHSKGSGSEALVGSPNGGSETPKSNGGSGGGGSQGTLACSASDQMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRLAMTWPHPADPAFYTYMMSHAAAAGGLPYPFPSHLPLPYYSPVGLGAASAASAAASPFSGSLRPLDTFRVLSQPYPRPELLCAFRHPPLYPGPAHGLGASAGGPCSCLACHSGPANGLAPRAAAASDFTCASTSRSDSFLTFAPSVLSKASSVALDQREEVPLTR", "length": 407 }, "evidence": [ { "id": "F1SHT9", "url": "https://omabrowser.org/oma/group/F1SHT9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SHT9", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1SHT9", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" } ], "pmid": "" }, { "name": "cell body", "id": "GO:0044297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044297", "evidence": [ { "database": "UniProtKB", "id": "F1SHT9", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SHT9", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SHT9", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SHT9", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHT9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 407, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHT9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHT9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHT9" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 178, "end_pos": 238, "start_aa": "Asp", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 154, "end_pos": 156 }, { "start_pos": 163, "end_pos": 165 }, { "start_pos": 26, "end_pos": 28 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHV7-1", "uniprot_ac": "F1SHV7", "uniprot_id": "F1SHV7_PIG", "mass": { "chemical_mass": 40501.0, "monoisotopic_mass": 40501.0 }, "refseq": {}, "gene_names": [ { "name": "MNX1", "type": "recommended", "evidence": [ { "id": "F1SHV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ] } ], "protein_names": [ { "name": "Homeobox protein HB9", "type": "recommended", "evidence": [ { "id": "F1SHV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHV7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MNX1", "url": "https://www.uniprot.org/uniprotkb/F1SHV7", "locus": { "chromosome": "18", "start_pos": 1730878, "end_pos": 1725244, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016410", "url": "https://www.ensembl.org/id/ENSSSCG00000016410" } ] } } ], "crossref": [ { "id": "F1SHV7", "url": "https://alphafold.ebi.ac.uk/entry/F1SHV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016410", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016410", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042768", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042768", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24335", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24335", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24335:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24335:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHV7-1", "url": "https://www.uniprot.org/uniprotkb/F1SHV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKSKNFRIDALLAVDPPRAASAQTAPLALVTSLAAAAAGPGGGGSGGAASGAASGSCSPASSEPPAAPADRLRAKSPSPPRLLAAHCALLPKPGFLGAGGAGSGAGGGARGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALAYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMVLPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGAGKGGGAEDPGDEELLGPPAPGDKGSGRRLRDLRDSDPEEEEDDDDDEDHFPYSNGASTHAASDGSSGADSPPPRPGHQPPPQ", "length": 401, "header": "tr|F1SHV7-1|F1SHV7_PIG Isoform 1 of Homeobox protein HB9 OS=Sus scrofa OX=9823 GN=MNX1 PE=4 SV=3 CANONICAL=F1SHV7-1" }, "isoforms": [ { "isoform_ac": "F1SHV7-1", "url": "https://www.uniprot.org/uniprotkb/F1SHV7/entry#F1SHV7-1", "sequence": { "sequence": "MEKSKNFRIDALLAVDPPRAASAQTAPLALVTSLAAAAAGPGGGGSGGAASGAASGSCSPASSEPPAAPADRLRAKSPSPPRLLAAHCALLPKPGFLGAGGAGSGAGGGARGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPALAYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMVLPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGAGKGGGAEDPGDEELLGPPAPGDKGSGRRLRDLRDSDPEEEEDDDDDEDHFPYSNGASTHAASDGSSGADSPPPRPGHQPPPQ", "length": 401, "header": "tr|F1SHV7-1|F1SHV7_PIG Isoform 1 of Homeobox protein HB9 OS=Sus scrofa OX=9823 GN=MNX1 PE=4 SV=3 CANONICAL=F1SHV7-1" }, "locus": { "chromosome": "18", "start_pos": 1730167, "end_pos": 1725244, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017867.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017867.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017386.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017386.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "spinal cord motor neuron cell fate specification", "id": "GO:0021520", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021520", "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "pmid": "" }, { "name": "neuron projection morphogenesis", "id": "GO:0048812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048812", "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "pmid": "" }, { "name": "central nervous system development", "id": "GO:0007417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007417", "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "pmid": "" }, { "name": "endocrine pancreas development", "id": "GO:0031018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031018", "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "pmid": "" }, { "name": "sequence-specific double-stranded DNA binding", "id": "GO:1990837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990837", "evidence": [ { "database": "UniProtKB", "id": "F1SHV7", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 401, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHV7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHV7" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 239, "end_pos": 299, "start_aa": "Gly", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHY2-1", "uniprot_ac": "F1SHY2", "uniprot_id": "F1SHY2_PIG", "mass": { "chemical_mass": 122819.0, "monoisotopic_mass": 122819.0 }, "refseq": { "ac": "XP_001924665", "name": "nuclear export mediator factor NEMF isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924665" }, "gene_names": [ { "name": "NEMF", "type": "recommended", "evidence": [ { "id": "F1SHY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ] }, { "name": "NEMF", "type": "synonym", "evidence": [ { "id": "XP_001924665", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924665" } ] } ], "protein_names": [ { "name": "Ribosome quality control complex subunit NEMF", "type": "recommended", "evidence": [ { "id": "F1SHY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY2/entry#names_and_taxonomy" } ] }, { "name": "Nuclear export mediator factor", "type": "synonym", "evidence": [ { "id": "F1SHY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY2/entry#names_and_taxonomy" } ] }, { "name": "nuclear export mediator factor NEMF isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001924665", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924665" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NEMF", "url": "https://www.uniprot.org/uniprotkb/F1SHY2", "locus": { "chromosome": "1", "start_pos": 179622755, "end_pos": 179670996, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005011", "url": "https://www.ensembl.org/id/ENSSSCG00000005011" } ] } } ], "crossref": [ { "id": "F1SHY2", "url": "https://alphafold.ebi.ac.uk/entry/F1SHY2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005011", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005011", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156579", "url": "https://www.ncbi.nlm.nih.gov/gene/100156579", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008532", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008532", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156579", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156579", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MFLEFFA", "url": "https://omabrowser.org/oma/group/MFLEFFA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SHY2", "url": "https://www.orthodb.org/?gene=F1SHY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15239", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15239", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15239:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15239:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05670", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05670", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001924665", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924665", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SHY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTRFSTIDLCAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDFKATLLLESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKGRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFRTDESDDVKFAVRERYPVDHARAAEPLLTLERLTEIIASAPKGELLKRVLNPLLPYGPALIEHCLIENGFSGNVKVDEKFESKDIEKVLVCLQKAEECMQTTSSFNGKGYIIQKREVKPSLEVDKPTVDILTYEEFHPFLFSQHSQCPYIEFESFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVANAIKELKLQTNHVTMLLRNPYLLSEEEDDDVDGDINTEKNESEPPKGKKKKQKNKQLQKPQKNRPLLVDVDLSLSAYANAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGEPIPPRTLTEAGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHRGERKVRVQDEDMDTLLGCTSELISEEMEQLDGGESSSEEDKEEFHETPVEVELVTQVDQEDITIQTGGHELNELIQEESSEDEGESEEVVKDQEPVGEMKDEGEETLNYPDTTIDLSHLQSQRSLQKLASKEEPSNMSDSKLQSRRHLSAKERREMKKKKLPSDLGELEMIEGKDKEKENALHIEAHPNTSKNVPAVQPMKRGQKSKMKKMKEKYKDQDEEERELIMKLLGSAGSNKEEKGKKGKKGKMKDEPVKKQPQKPRGGPRVSDSIKKETPSLEVTTHELQDLAVDDSHDDKEEQDLDQQGNEENLFDSLTGQPHPEDVLLFAIPICAPYTTMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLNVKRK", "length": 1076, "header": "tr|F1SHY2-1|F1SHY2_PIG Isoform 1 of Ribosome quality control complex subunit NEMF OS=Sus scrofa OX=9823 GN=NEMF PE=3 SV=3 CANONICAL=F1SHY2-1" }, "isoforms": [ { "isoform_ac": "F1SHY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SHY2/entry#F1SHY2-1", "sequence": { "sequence": "MKTRFSTIDLCAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDFKATLLLESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKGRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFRTDESDDVKFAVRERYPVDHARAAEPLLTLERLTEIIASAPKGELLKRVLNPLLPYGPALIEHCLIENGFSGNVKVDEKFESKDIEKVLVCLQKAEECMQTTSSFNGKGYIIQKREVKPSLEVDKPTVDILTYEEFHPFLFSQHSQCPYIEFESFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVANAIKELKLQTNHVTMLLRNPYLLSEEEDDDVDGDINTEKNESEPPKGKKKKQKNKQLQKPQKNRPLLVDVDLSLSAYANAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGEPIPPRTLTEAGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHRGERKVRVQDEDMDTLLGCTSELISEEMEQLDGGESSSEEDKEEFHETPVEVELVTQVDQEDITIQTGGHELNELIQEESSEDEGESEEVVKDQEPVGEMKDEGEETLNYPDTTIDLSHLQSQRSLQKLASKEEPSNMSDSKLQSRRHLSAKERREMKKKKLPSDLGELEMIEGKDKEKENALHIEAHPNTSKNVPAVQPMKRGQKSKMKKMKEKYKDQDEEERELIMKLLGSAGSNKEEKGKKGKKGKMKDEPVKKQPQKPRGGPRVSDSIKKETPSLEVTTHELQDLAVDDSHDDKEEQDLDQQGNEENLFDSLTGQPHPEDVLLFAIPICAPYTTMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLNVKRK", "length": 1076, "header": "tr|F1SHY2-1|F1SHY2_PIG Isoform 1 of Ribosome quality control complex subunit NEMF OS=Sus scrofa OX=9823 GN=NEMF PE=3 SV=3 CANONICAL=F1SHY2-1" }, "locus": { "chromosome": "1", "start_pos": 179670958, "end_pos": 179624627, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005527.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005527.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005390.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005390.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156579", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156579", "resource": "KEGG Pathway" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ARH7-1", "protein_name": "Ribosome quality control complex subunit NEMF", "gene_name": "Nemf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTESFASTKSMIYYMFRFCSLLGMRVNNVYDVDNKTYLIRLQKPDFKATLLLESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFRTDEADDVKFAVRERYPIDHARAAEPLLTLERLTEVIARAPRGELLKRVLNPLLPYGPALIEHCLIENGFSGNVKVDEKLESKDIEKILVCVQRAEDYLEKTANFNGKGYIIQKREVKPSLDANKPAEDILTYEEFHPFLFSQHLQCPYIEFESFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNLQIVDRAIQVVRSALANQIDWTEIGVIVKEAQAQGDPVASAIKELKLQTNHITMLLRNPYLLSEEEDGDGDGSIENSDAEAPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYANAKKYYDHKRYAAKKTQRTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGDPIPPRTLTEAGTMALCYSAAWDARVITSAWWVHHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHRGERKVRVQDEDMETLTSCTSELMSEEMEQLEGGDSSEEETEELRGTTEEVELRTQADPEDIAAHSGREELSSEDGEAIKTATKDEEPIGEVREEEEEPFEYPDTTIDLSHLQSQRPLQKLTPREESFNSSDSKSQSRRHLSAKERREMKKKKLPCDSGDLEVIEEKDKEKESAVHSEADQNTSKNVAAGQPMKRGQKSKMKKMKEKYKDQDDEDRELIMKLLASAGSNKEEKGKKGKKGKTKDEPVKKNPQKPRGGQRVLDVVKETPSLQASTPDLQDFAVDEPHDDKEEHDLDQQGNEENLFDSLTGQPHPEDVLMFAIPICAPYTIMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLHVKRK", "length": 1065 }, "evidence": [ { "id": "F1SHY2", "url": "https://omabrowser.org/oma/group/F1SHY2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O60524-1", "protein_name": "Ribosome quality control complex subunit NEMF", "gene_name": "NEMF", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKSRFSTIDLRAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDFKATLLLESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYVILNILRFRTDEADDVKFAVRERYPLDHARAAEPLLTLERLTEIVASAPKGELLKRVLNPLLPYGPALIEHCLLENGFSGNVKVDEKLETKDIEKVLVSLQKAEDYMKTTSNFSGKGYIIQKREIKPSLEADKPVEDILTYEEFHPFLFSQHSQCPYIEFESFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLRNPYLLSEEEDDDVDGDVNVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYANAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGEPIPPRTLTEAGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHQGERKVRVQDEDMETLASCTSELISEEMEQLDGGDTSSDEDKEEHETPVEVELMTQVDQEDITLQSGRDELNEELIQEESSEDEGEYEEVRKDQDSVGEMKDEGEETLNYPDTTIDLSHLQPQRSIQKLASKEESSNSSDSKSQSRRHLSAKERREMKKKKLPSDSGDLEALEGKDKEKESTVHIETHQNTSKNVAAVQPMKRGQKSKMKKMKEKYKDQDEEDRELIMKLLGSAGSNKEEKGKKGKKGKTKDEPVKKQPQKPRGGQRVSDNIKKETPFLEVITHELQDFAVDDPHDDKEEQDLDQQGNEENLFDSLTGQPHPEDVLLFAIPICAPYTTMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLNVKRK", "length": 1076 }, "evidence": [ { "id": "F1SHY2", "url": "https://omabrowser.org/oma/group/F1SHY2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q12532-1", "protein_name": "Ribosome quality control complex subunit 2", "gene_name": "RQC2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MKQRISALDLLLLARELKQDLEGYRLSNIYNIADSSKQFLLKFNKPDSKLNVVVDCGLRIYLTEFSRPIPPTPSGFVVKLRKHLKAKRLTALKQVDQDRILVLQFADGHFYLVLEFFSAGNVILLDENRRIMALQRVVLEHENKVGQIYEMFDESLFTTNNESADESIEKNRKAEYTSELVNEWIKAVQAKYESDITVIKQLNIQGKEGAKKKKVKVPSIHKLLLSKVPHLSSDLLSKNLKVFNIDPSESCLNLLEETDSLAELLNSTQLEYNQLLTTTDRKGYILAKRNENYISEKDTADLEFIYDTFHPFKPYINGGDTDSSCIIEVEGPYNRTLDKFFSTIESSKYALRIQNQESQAQKKIDDARAENDRKIQALLDVQELNERKGHLIIENAPLIEEVKLAVQGLIDQQMDWNTIEKLIKSEQKKGNRIAQLLNLPLNLKQNKISVKLDLSSKELNTSSDEDNESEGNTTDSSSDSDSEDMESSKERSTKSMKRKSNEKINVTIDLGLSAYANATEYFNIKKTSAQKQKKVEKNVGKAMKNIEVKIDQQLKKKLKDSHSVLKKIRTPYFFEKYSWFISSEGFLVMMGKSPAETDQIYSKYIEDDDIYMSNSFNSHVWIKNPEKTEVPPNTLMQAGILCMSSSEAWSKKISSSPWWCFAKNVSKFDGSDNSILPEGAFRLKNENDQNHLPPAQLVMGFGFLWKVKTSGNEDNGDDDEEEEEEEEEEEEEEEEEEEEEEEEKEEEEKEEEQQQDEDDSNEVNGLEKGGDSNDSTKNNSFEHDNLEKDIEKHCTISSDTDSDSGNAKAKNDNSSTQRILDEPGVPISLIENINSNVRGKRGKLKKIQKKYADQDETERLLRLEALGTLKGIEKQQQRKKEEIMKREVREDRKNKREKQRRLQALKFTKKEKARVNYDKHKSELKPSLDKGDVVDDIIPVFAPWPALLKYKYKVKIQPGSAKKTKTLTEILHYFKSRPLDGSSTDNEMDWPQEHEMIKGLKEQDLVLLLCVDKLKVTIAGQKSTKNGGNSSKKGKKKR", "length": 1038 }, "evidence": [ { "id": "F1SHY2", "url": "https://omabrowser.org/oma/group/F1SHY2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54HA7-1", "protein_name": "DUF814 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKTRFSSIDIRTTVVNLQKSLIGLRLANLYDLSPRVFLLKFSKPDCKKNLIIESGIRIHSTNFVRDKGDHTPAPFSLNLRKYLKTKRLESVKQLGVDRVVDFTFGSGVAVQHLIVELYSIGNIILTDGEYRILAILRTHQYNQDESVAVGDVYPIDKVKVPTEFTESLIDQIIENTVDKKETLKQVFNKSLDFGPELIEHCLLSAGLQPSTKLEQYDHSKFSKSLRDSFIQGQKIFDNSIQSKGYIVLKDPKQLKPQQQQKQQKQQQQQQSNTLKISNDLSSNNNNNNNNNNNLEEKKEMVIYEEFVPYLYKQYELKKFIEFESFDAAVDQFFSEIESQKVEQQRIAQEQVVLKKLDKVKEDQQRRIDSLFANEVENIRKAQLIEANLQEVDQCILIIRSGVASSMDWETLNQLLKEEKKKNPYSVATKIHRLKLESNQITLSLTDNFLYDDNDGDDDDDDEESDEESDEEDQNTKKSIKKSKTSNQKPNLIDVDISLSAFANARKYYDTKKQSHEKAQKTISQAEFALKAAEKKTRQQLSETKSKNSMIAMRKIFWFEKFHWFISSDNYIVVSGRDAQQNELLYKKYLEKDDIYVHADIFGSTSCVIKNPNGGEIPPNTLIQAGTMTMCYSNAWSAKVVTSAYWVYSHQVSKTAPSGEFLTTGSFMIRGKKNYLPHSQLVMGFGFMFKIDDSCLGNHLNERKPIYGEGDDRLLTTSDSTNTTTEDGTIESSENAEKHLRKFERTKLKKEQKEQKELEELEKLSLKDQNNDSTTTTTTTTTTTTTTSPIKPQTTTTTNKYKIQLVSSFKDDEDDDDEDDDEDDEENKKEEGRTKGYVSAHQRKLMKKEGISLEEAAQLEQQLKKEKDEKEKKKQETKSEEKVKSEPQKHLLPSQKNKLKKIKEKYGHQDEEERQERMEILGSAGSKKENKKKDKKGKKGGKSTNNNNNNKDNKDKKPINSNVVADKQKVEEIIKLKEDQNKKPTPTTTNQTTTTATTTTTTTTTTEKSQPKVEEKESDSEEEEEKEDKEEEESSESESESEGEGEESEEKKEKRKSRKEKREDKIKEEQEIKRLLEEENSSKAVDDQKDITNIDTLTGQPRDDDILHFAIPVVAPYSVFNNYKFKVKLTPGHLKRGKAAKQAAQVILTNPQLTKREKELIKHVKDEDLTSNMLADVRLHAPNLLQAQKKEKKERKEKAKEKANELKENYKDKDNNNNNSSTTTSTTTSTTATTTTSNNNNNNNNNNNNNNNNNNNNNNNNNNNNKSKK", "length": 1268 }, "evidence": [ { "id": "F1SHY2", "url": "https://omabrowser.org/oma/group/F1SHY2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8CCP0-1", "protein_name": "Ribosome quality control complex subunit NEMF", "gene_name": "Nemf", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSRFSTVDLRAVLAELNASLLGMRVNNVYDVDNKTYLIRLQKPDFKATLLLESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYLILNILRFRTDEADDVKFAVRERYPIDHARAAEPLLTLERLTEVIAAAPKGEVLKRVLNPLLPYGPALIEHCLIESGFSGNAKVDEKLESKDIEKILVCVQRAEDYLRKTSNFNGKGYIIQKREAKPSLDADKPAEDILTYEEFHPFLFSQHLQCPYIEFESFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNLQIVDRAIQVVRSALANQIDWTEIGVIVKEAQAQGDPVACAIKELKLQTNHVTMLLRNPYLLSEEEDGDGDASIENSDAEAPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYANAKKYYDHKRYAAKKTQRTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGEPIPPRTLTEAGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHRGERKVRVQDEDMETLTSCTSELMAEEMEQLEGGDSSEEETEELHGMPGDVELMTQVDQEDIAVHSGRDELSSEDGEAKAVTKDQEPIGEMKEEEEDTFEYPDTTIDLSHLQSQRPLQKLAPREESLNSNDSKSQGRRHLSAKERREMKKKKLPCESGDLEVIEEKDKERESAVHTEAYQNTSKNVAAGQPMKRGQKSKMKKMKEKYKDQDDEDRELIMKLLASAGSNKEEKGKKGKKGKPKDEPVKKPPQKPRGGQRVLDVVKEPPSLQVLAHDLQDLAVDDPHDDKEEHDLDQQGNEENLFDSLTGQPHPEDVLMFAIPICAPYTIMTNYKYKVKLTPGVQKKGKAAKTALNSFMHSKEATAREKDLFRSVKDTDLSRNIPGKVKVSAPNLLHVKRK", "length": 1064 }, "evidence": [ { "id": "F1SHY2", "url": "https://omabrowser.org/oma/group/F1SHY2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LTX7-1", "protein_name": "Zinc knuckle (CCHC-type) family protein", "gene_name": "EMB1441", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVKVRMNTADVAAEVKCLKRLIGMRCSNVYDISPKTYMFKLLNSSGITESGESEKVLLLMESGVRLHTTAYVRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIIVFQFGLGANAHYVILELYAQGNIILTDSEYMIMTLLRSHRDDNKGFAIMSRHRYPIEICRVFERTTVSKLQESLTAFVLKDHDAKQIEPKEQNGGKKGGKSNDSTGAKQYTLKNILGDALGYGPQLSEHIILDAGLVPTTKLSEDKKLDDNEIQLLVQAVIVFEDWLEDIINGQKVPEGYILMQKQILANDTTSESGGVKKMYDEFCSILLNQFKSRVYEKFETFDAALDEFYSKIESQRSEQQQKAKEDSASLKLNKIRQDQENRVQILKKEVNHCVNMAELIEYNLEDVDAAILAVRVALAKGMGWDDLARMVKEEKKLGNPVAGVIDRLYLEKNCMTLLLCNNLDEMDDDEKTVPVEKVEVDLSLSAHGNARRWYEMKKKQETKQEKTVSAHEKAFRAAEKKTRHQLSQEKVVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHAELHGASSTVIKNHKPEQNVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVTKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGAHLNERRVRGEEEGMNDVVMETHAPDEHSDTESENEAVNEVVSASGEVDLQESSTALSQDTSSLDMSSSGITEENVASATSQLEDLLDRTLGLGAATVAGKKDTIETSKDDMEEKMKQEEKNAVVRDKPYMSKAERRKLKMGQSGNTAADGNTGQEKQQRKEKDVSSLSQATKSIPDNKPAGEKVSRGQRGKLKKMKEKYADQDEDERKIRMALLASSGKPQKTDVESQNAKTAVTEVKKPSEETDDAVKICYRCKKVGHLARDCHGKETSDMDKVVMEEDDIHEVGDEEKEKLIDVDYLTGNPLPTDILLYAVPVCGPYNALQSYKYRVKAIPGSMKKGKAAKTAMNLFTHMSEASVREKELMKACTDPELMAALVGNVKITAAGLTQLKQKQKKGKKSGKQQHS", "length": 1080 }, "evidence": [ { "id": "F1SHY2", "url": "https://omabrowser.org/oma/group/F1SHY2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VBX1-1", "protein_name": "Ribosome quality control complex subunit NEMF homolog", "gene_name": "Clbn", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKTRFNTFDIICGVAELQKLVGWRVNQIYDVDNKTYLFRMQGTGAVEKVTLLIESGTRFHTTRFEWPKNMAPSGFSMKLRKHLKNKRLEKVQQMGSDRIVDFQFGTGDAAYHVILELYDRGNVILTDYELTTLYILRPHTEGENLRFAMREKYPVERAKQPTKELELEALVKLLENARNGDYLRQILTPNLDCGPAVIEHVLLSHGLDNHVIKKETTEETPEAEDKPEKGGKKQRKKQQNTKLEQKPFDMVNDLPILQQAVKDAQELIAEGNSGKSKGYIIQVKEEKPTENGTVEFFFRNIEFHPYLFIQFKNFEKATFESFMEAVDEFYSTQESQKIDMKTLQQEREALKKLSNVKNDHAKRLEELTKVQDVDRKKAELITSNQSLVDNAIRAVQSAIASQLSWPDIHELVKEAQANGDAVASSIKQLKLETNHISLMLSDPYDNDEDDDLKDPEVTVVDVDLALSAWANARRYYDMKRSAAQKEKKTVDASQKALKSAERKTQQTLKEVRTISNIVKARKVFWFEKFYWFISSENYLVIGGRDAQQNELIVKRYMRPKDIYVHAEIQGASSVIIQNPTGEEIPPKTLLEAGSMAISYSVAWDAKVVTNSYWVTSDQVSKTAPTGEYLATGSFMIRGKKNFLPSCHLTMGLSLLFKLEDSFIERHLGERKVRSLEDDQIDPNVKENEVEHDLLSDNEDADSNINLSEPSSNTEITAFPNTEVKIEHDTGRIIVRSDSVNPEIEETKESEVVLDKILKKTDDEETTIILAGPSRKKQVSAKKTKEDKARAKQEAAKQEVPPVSSEPKNPSQVKRGQKGKLKKMKQKYKDQDDEEREIRMMILKSSGKEKPQASADKVVEKSESTKEYVKPEKSAAPKNPVELDDADEVPVGGDVDVLNSLTGQPHEGDELLFAIPVVAPYQALQNYKFKVKLTPGTGKRGKAAKLALNIFAKEKSCSAREKDLLKSIKEESLARNIPGKVKLSAPQLQKYHK", "length": 992 }, "evidence": [ { "id": "F1SHY2", "url": "https://omabrowser.org/oma/group/F1SHY2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "rescue of stalled ribosome", "id": "GO:0072344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072344", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" }, { "name": "nuclear export", "id": "GO:0051168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051168", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" }, { "name": "ribosome-associated ubiquitin-dependent protein catabolic process", "id": "GO:1990116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990116", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" }, { "name": "protein-containing complex assembly", "id": "GO:0065003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0065003", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" }, { "name": "CAT tailing", "id": "GO:0140708", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140708", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" }, { "name": "cytosolic ribosome", "id": "GO:0022626", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022626", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" }, { "name": "RQC complex", "id": "GO:1990112", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990112", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" }, { "name": "ribosomal large subunit binding", "id": "GO:0043023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043023", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" }, { "name": "alpha-aminoacyl-tRNA binding", "id": "GO:1904678", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904678", "evidence": [ { "database": "UniProtKB", "id": "F1SHY2", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" }, { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" }, { "start_pos": 804, "end_pos": 806, "annotation": "n_glycosylation_sequon" }, { "start_pos": 857, "end_pos": 859, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHY2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1076, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHY2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHY2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" }, { "id": "PF05670", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05670" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NFACT RNA-binding", "eco_id": "ECO_0000259", "start_pos": 529, "end_pos": 639, "start_aa": "Lys", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SHY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY2" }, { "id": "PF11923", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11923" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NFACT protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 975, "end_pos": 1066, "start_aa": "Asn", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 34, "end_pos": 36 }, { "start_pos": 433, "end_pos": 435 }, { "start_pos": 804, "end_pos": 806 }, { "start_pos": 857, "end_pos": 859 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHY4-1", "uniprot_ac": "F1SHY4", "uniprot_id": "F1SHY4_PIG", "mass": { "chemical_mass": 25046.0, "monoisotopic_mass": 25046.0 }, "refseq": {}, "gene_names": [ { "name": "CFC1B", "type": "recommended", "evidence": [ { "id": "F1SHY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ] } ], "protein_names": [ { "name": "EGF-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SHY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFC1B", "url": "https://www.uniprot.org/uniprotkb/F1SHY4", "locus": {} } ], "crossref": [ { "id": "F1SHY4", "url": "https://alphafold.ebi.ac.uk/entry/F1SHY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016393", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016393", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14949", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14949", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14949:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14949:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHY4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTQSHPVRLLFMISLALQIIDLGNSYQREKYQDSREEINNATAQLQQKTLNWTLNNFREEHDRTQGWRPQGSFPYSWAFQERAPPRPRCCKNGGTCVLGSFCVCPAHFTGRYCEHDLRHSECGAVMHGAWTFRGCRLCRCVFATLHCLPRQTTGRCDLKDFLASHSSGPSTRCTWSVLLFLPCVLLKSILSEGAPDFSKWVREAALCGEPGFVLPLALSML", "length": 221, "header": "tr|F1SHY4-1|F1SHY4_PIG Isoform 1 of EGF-like domain-containing protein OS=Sus scrofa OX=9823 GN=CFC1B PE=3 SV=4 CANONICAL=F1SHY4-1" }, "isoforms": [ { "isoform_ac": "F1SHY4-1", "url": "https://www.uniprot.org/uniprotkb/F1SHY4/entry#F1SHY4-1", "sequence": { "sequence": "MTQSHPVRLLFMISLALQIIDLGNSYQREKYQDSREEINNATAQLQQKTLNWTLNNFREEHDRTQGWRPQGSFPYSWAFQERAPPRPRCCKNGGTCVLGSFCVCPAHFTGRYCEHDLRHSECGAVMHGAWTFRGCRLCRCVFATLHCLPRQTTGRCDLKDFLASHSSGPSTRCTWSVLLFLPCVLLKSILSEGAPDFSKWVREAALCGEPGFVLPLALSML", "length": 221, "header": "tr|F1SHY4-1|F1SHY4_PIG Isoform 1 of EGF-like domain-containing protein OS=Sus scrofa OX=9823 GN=CFC1B PE=3 SV=4 CANONICAL=F1SHY4-1" }, "locus": { "chromosome": "15", "start_pos": 56951893, "end_pos": 56943287, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017849.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017849.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017368.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017368.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "heart development", "id": "GO:0007507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007507", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "pmid": "" }, { "name": "blood vessel development", "id": "GO:0001568", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001568", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "pmid": "" }, { "name": "anterior/posterior pattern specification", "id": "GO:0009952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009952", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "pmid": "" }, { "name": "nodal signaling pathway", "id": "GO:0038092", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038092", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "pmid": "" }, { "name": "determination of left/right symmetry", "id": "GO:0007368", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007368", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nodal binding", "id": "GO:0038100", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038100", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "pmid": "" }, { "name": "activin receptor binding", "id": "GO:0070697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070697", "evidence": [ { "database": "UniProtKB", "id": "F1SHY4", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHY4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 221, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHY4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHY4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY4" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 85, "end_pos": 114, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 }, { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SHY5-1", "uniprot_ac": "F1SHY5", "uniprot_id": "F1SHY5_PIG", "mass": { "chemical_mass": 40179.0, "monoisotopic_mass": 40179.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100515176", "type": "recommended", "evidence": [ { "id": "F1SHY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY5" } ] } ], "protein_names": [ { "name": "tryptase", "type": "recommended", "evidence": [ { "id": "F1SHY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY5/entry#names_and_taxonomy" } ] }, { "name": "3.4.21.59", "type": "synonym", "evidence": [ { "id": "F1SHY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Tryptase is the major neutral protease present in mast cells and is secreted upon the coupled activation-degranulation response of this cell type.", "evidence": [ { "database": "UniProtKB", "id": "F1SHY5", "url": "https://www.uniprot.org/uniprotkb/F1SHY5#function" }, { "database": "UniProtKB", "id": "ARBA00054350", "url": "https://www.uniprot.org/uniprotkb/ARBA00054350#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SHY5", "url": "https://www.uniprot.org/uniprotkb/F1SHY5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100515176", "url": "https://www.uniprot.org/uniprotkb/F1SHY5", "locus": {} } ], "crossref": [ { "id": "F1SHY5", "url": "https://alphafold.ebi.ac.uk/entry/F1SHY5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016392", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016392", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CFQKSHE", "url": "https://omabrowser.org/oma/group/CFQKSHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SHY5", "url": "https://www.uniprot.org/uniprotkb/F1SHY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SHY5-1", "url": "https://www.uniprot.org/uniprotkb/F1SHY5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEIAGPGGSGAGWWGACTLAVVVLCLLSLPLGTEVAGTTTQRSTQPSEEIQPQADTQAECGIPAVTGKIFGGRDAPQKRWPWQASVLYRGMHICGATIVSAYWVISAAHCFQKSHHPDDYQILLGYYRLKSPTQHSLQMSVYRVFVHNDFNKRYFMGSDITLLQLYGPVNFTEYIRPACLPGRNPQVSSSASCWITGWGMVTETTMLGDPYTLQEAQLGIMDSQICTMFFQGPQPGNNTYSVQDDMLCAGDLMTGKSICRGDSGGPFVCNLNNVWFLIGLSSWSLPCQQPVSPSVFTRVSYFSEWITQKQNSSPNPDPSSVPHPPSVPPGVPIFPSLGNIHKPRSVLTLVISQVLVLLLISLWTLQL", "length": 367, "header": "tr|F1SHY5-1|F1SHY5_PIG Isoform 1 of tryptase OS=Sus scrofa OX=9823 GN=LOC100515176 PE=4 SV=5 CANONICAL=F1SHY5-1" }, "isoforms": [ { "isoform_ac": "F1SHY5-1", "url": "https://www.uniprot.org/uniprotkb/F1SHY5/entry#F1SHY5-1", "sequence": { "sequence": "MEIAGPGGSGAGWWGACTLAVVVLCLLSLPLGTEVAGTTTQRSTQPSEEIQPQADTQAECGIPAVTGKIFGGRDAPQKRWPWQASVLYRGMHICGATIVSAYWVISAAHCFQKSHHPDDYQILLGYYRLKSPTQHSLQMSVYRVFVHNDFNKRYFMGSDITLLQLYGPVNFTEYIRPACLPGRNPQVSSSASCWITGWGMVTETTMLGDPYTLQEAQLGIMDSQICTMFFQGPQPGNNTYSVQDDMLCAGDLMTGKSICRGDSGGPFVCNLNNVWFLIGLSSWSLPCQQPVSPSVFTRVSYFSEWITQKQNSSPNPDPSSVPHPPSVPPGVPIFPSLGNIHKPRSVLTLVISQVLVLLLISLWTLQL", "length": 367, "header": "tr|F1SHY5-1|F1SHY5_PIG Isoform 1 of tryptase OS=Sus scrofa OX=9823 GN=LOC100515176 PE=4 SV=5 CANONICAL=F1SHY5-1" }, "locus": { "chromosome": "15", "start_pos": 56983020, "end_pos": 56967423, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017848.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017848.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017367.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017367.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SHY5", "url": "https://www.uniprot.org/uniprotkb/F1SHY5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "O70169-1", "protein_name": "Inactive serine protease 39", "gene_name": "Prss39", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWGSRAQQSGPDRGGACLLAAFLLCFSLLHAQDYTPSQTPPPTSNTSLKPRGRVQKELCGKTKFQGKIYGGQIAKAERWPWQASLIFRGRHICGAVLIDKTWLLSAAHCFQRSLTPSDYRILLGYNQLSNPSNYSRQMTVNKVILHEDYSKLSRLEKNIVLIQLHHPVIYSTHIFPACVPDGTTKVSPNNLCWISGWGMLSADKFLQAPFPLLDAEVSLIDEEECTTFFQTPEVSITEYDVIKDDVLCAGDLTNQKSSCRGDSGGPLVCFLNSFWYVVGLANWNGACLEPIHSPNIFTKVSYFSDWIKQKKANTPAADVSSAPLEEMASSLRGWGNYSAGITLKPRISTTLLSSQALLLQSIWLRIL", "length": 367 }, "evidence": [ { "id": "F1SHY5", "url": "https://omabrowser.org/oma/group/F1SHY5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6AXZ6-1", "protein_name": "Serine protease 40", "gene_name": "Prss40", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWGSRAQQSGPDRGRTCLLAVLLLSFSLFQLHAQDYKPSQTPPPTSDALLKPMGRVQKEICGKTKFQGKIYGGSIAKAERWPWQASLIFRGRHICGAVLIDKNWVASAAHCFKRSLKPSDYRILLGYNELSNPSNYSRQMTLSKVIVHEDYNKLHSQEKDIVLIQLHLPVRYSSHIFPVCVPDQTTKEPSDESCWISGWGMVTDDKFLQAPFPLLDSEVFLMNDQECEAFFQTPQISITEYDAIKDDMICAGDITNQKSTCRGDSGGPLVCLLDSYWYLVGLASWSGACLEPIHSPSIFTRVSHFSDWIEKKKADTPDVDPSLAPLEETAPSLIGWRNYSAGTTLEPRICTTLLSSQVLLLQSIWLRIL", "length": 369 }, "evidence": [ { "id": "F1SHY5", "url": "https://omabrowser.org/oma/group/F1SHY5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1SHY5", "url": "https://www.uniprot.org/uniprotkb/F1SHY5" } ], "pmid": "" }, { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "F1SHY5", "url": "https://www.uniprot.org/uniprotkb/F1SHY5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SHY5", "url": "https://www.uniprot.org/uniprotkb/F1SHY5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "F1SHY5", "url": "https://www.uniprot.org/uniprotkb/F1SHY5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SHY5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 367, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SHY5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SHY5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SHY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SHY5" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 69, "end_pos": 311, "start_aa": "Ile", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 }, { "start_pos": 237, "end_pos": 239 }, { "start_pos": 311, "end_pos": 313 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI00-1", "uniprot_ac": "F1SI00", "uniprot_id": "F1SI00_PIG", "mass": { "chemical_mass": 35557.0, "monoisotopic_mass": 35557.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110258060", "type": "recommended", "evidence": [ { "id": "F1SI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ] } ], "protein_names": [ { "name": "Cyclin-dependent kinase 20", "type": "recommended", "evidence": [ { "id": "F1SI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI00/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.22", "type": "synonym", "evidence": [ { "id": "F1SI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI00/entry#names_and_taxonomy" } ] }, { "name": "Cell cycle-related kinase", "type": "synonym", "evidence": [ { "id": "F1SI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI00/entry#names_and_taxonomy" } ] }, { "name": "Cell division protein kinase 20", "type": "synonym", "evidence": [ { "id": "F1SI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI00/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110258060", "url": "https://www.uniprot.org/uniprotkb/F1SI00", "locus": {} } ], "crossref": [ { "id": "F1SI00", "url": "https://alphafold.ebi.ac.uk/entry/F1SI00", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016385", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016385", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24056", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24056", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24056:SF171", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24056:SF171", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI00-1", "url": "https://www.uniprot.org/uniprotkb/F1SI00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQYCILGRIGEGAHGNFFKAKHVETGEIVALKKVALRRLEDGIPNQALREVKALQEIEDSQYVVQLKAVFPHSAGFVLAFEYMLSDLAEVLRHAQRPLAQVQVKSYLQMLLKGIAFCHAKNNCDLKPANLLISASRQLKIADFGLVATRWYRAPELLYGARQYNQGIDLCAVGWILGELLNGSPLFPGENDIKQLWASPDGPASSPGDDYNKISFKEQVPVPLEEVLLDASPQALVFLGRFLLYPPLQRIAASQALLHQYFFTAPLPAHPSELPIPHCPGGPTPKAHPGSPHVHDFHVDWPLEESLLNPELIWPFILEG", "length": 320, "header": "tr|F1SI00-1|F1SI00_PIG Isoform 1 of Cyclin-dependent kinase 20 OS=Sus scrofa OX=9823 GN=LOC110258060 PE=3 SV=3 CANONICAL=F1SI00-1" }, "isoforms": [ { "isoform_ac": "F1SI00-1", "url": "https://www.uniprot.org/uniprotkb/F1SI00/entry#F1SI00-1", "sequence": { "sequence": "MEQYCILGRIGEGAHGNFFKAKHVETGEIVALKKVALRRLEDGIPNQALREVKALQEIEDSQYVVQLKAVFPHSAGFVLAFEYMLSDLAEVLRHAQRPLAQVQVKSYLQMLLKGIAFCHAKNNCDLKPANLLISASRQLKIADFGLVATRWYRAPELLYGARQYNQGIDLCAVGWILGELLNGSPLFPGENDIKQLWASPDGPASSPGDDYNKISFKEQVPVPLEEVLLDASPQALVFLGRFLLYPPLQRIAASQALLHQYFFTAPLPAHPSELPIPHCPGGPTPKAHPGSPHVHDFHVDWPLEESLLNPELIWPFILEG", "length": 320, "header": "tr|F1SI00-1|F1SI00_PIG Isoform 1 of Cyclin-dependent kinase 20 OS=Sus scrofa OX=9823 GN=LOC110258060 PE=3 SV=3 CANONICAL=F1SI00-1" }, "locus": { "chromosome": "AEMK02000652.1", "start_pos": 22955, "end_pos": 16424, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017840.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017840.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017359.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017359.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 284, "start_aa": "Thr", "end_pos": 284, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr284", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ], "pmid": "" }, { "name": "cyclin-dependent protein serine/threonine kinase activity", "id": "GO:0004693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004693", "evidence": [ { "database": "UniProtKB", "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1SI00", "url": "https://www.uniprot.org/uniprotkb/F1SI00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SI00-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 320, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SI00-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SI00" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SI00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI00" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 262, "start_aa": "Tyr", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 284 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 182, "end_pos": 184 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI10-1", "uniprot_ac": "F1SI10", "uniprot_id": "F1SI10_PIG", "mass": { "chemical_mass": 20244.0, "monoisotopic_mass": 20244.0 }, "refseq": {}, "gene_names": [ { "name": "RPL10L", "type": "recommended", "evidence": [ { "id": "F1SI10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ] } ], "protein_names": [ { "name": "Ribosomal protein L10 like", "type": "synonym", "evidence": [ { "id": "F1SI10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI10/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPL10L", "url": "https://www.uniprot.org/uniprotkb/F1SI10", "locus": { "chromosome": "1", "start_pos": 176603248, "end_pos": 176603892, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005001", "url": "https://www.ensembl.org/id/ENSSSCG00000005001" } ] } } ], "crossref": [ { "id": "F1SI10", "url": "https://alphafold.ebi.ac.uk/entry/F1SI10", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005001", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005001", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01433", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01433", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018255", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018255", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11726", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11726", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00252", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00252", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI10-1", "url": "https://www.uniprot.org/uniprotkb/F1SI10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRRPARCYRYCKNKPYPKSRFCRGVPDAARICANKYMVKSCGKDGYHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNTDEFEDKVAKKCLIPDGCGVKYVPSRGPLDKWRVLHS", "length": 176, "header": "tr|F1SI10-1|F1SI10_PIG Isoform 1 of Ribosomal protein L10 like OS=Sus scrofa OX=9823 GN=RPL10L PE=3 SV=2 CANONICAL=F1SI10-1" }, "isoforms": [ { "isoform_ac": "F1SI10-1", "url": "https://www.uniprot.org/uniprotkb/F1SI10/entry#F1SI10-1", "sequence": { "sequence": "MGRRPARCYRYCKNKPYPKSRFCRGVPDAARICANKYMVKSCGKDGYHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNTDEFEDKVAKKCLIPDGCGVKYVPSRGPLDKWRVLHS", "length": 176, "header": "tr|F1SI10-1|F1SI10_PIG Isoform 1 of Ribosomal protein L10 like OS=Sus scrofa OX=9823 GN=RPL10L PE=3 SV=2 CANONICAL=F1SI10-1" }, "locus": { "chromosome": "1", "start_pos": 176603892, "end_pos": 176603251, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005516.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005516.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005379.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005379.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "pmid": "" }, { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "pmid": "" }, { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "pmid": "" }, { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "pmid": "" }, { "name": "ribosomal large subunit assembly", "id": "GO:0000027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000027", "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "pmid": "" }, { "name": "male meiosis I", "id": "GO:0007141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007141", "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1SI10", "url": "https://www.uniprot.org/uniprotkb/F1SI10" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SI10-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 176, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SI10-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SI10" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI15-1", "uniprot_ac": "F1SI15", "uniprot_id": "F1SI15_PIG", "mass": { "chemical_mass": 78090.0, "monoisotopic_mass": 78090.0 }, "refseq": { "ac": "XP_001927155", "name": "pre-mRNA-processing factor 39 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927155" }, "gene_names": [ { "name": "PRPF39", "type": "recommended", "evidence": [ { "id": "F1SI15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI15" } ] }, { "name": "PRPF39", "type": "synonym", "evidence": [ { "id": "XP_001927155", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927155" } ] } ], "protein_names": [ { "name": "Pre-mRNA-processing factor 39", "type": "recommended", "evidence": [ { "id": "F1SI15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI15/entry#names_and_taxonomy" } ] }, { "name": "PRP39 homolog", "type": "synonym", "evidence": [ { "id": "F1SI15", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI15/entry#names_and_taxonomy" } ] }, { "name": "pre-mRNA-processing factor 39 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001927155", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927155" } ] } ], "function": [ { "annotation": "Involved in pre-mRNA splicing.", "evidence": [ { "database": "UniProtKB", "id": "F1SI15", "url": "https://www.uniprot.org/uniprotkb/F1SI15#function" }, { "database": "UniProtKB", "id": "ARBA00003777", "url": "https://www.uniprot.org/uniprotkb/ARBA00003777#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI15", "url": "https://www.uniprot.org/uniprotkb/F1SI15" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRPF39", "url": "https://www.uniprot.org/uniprotkb/F1SI15", "locus": { "chromosome": "1", "start_pos": 175317298, "end_pos": 175285270, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004997", "url": "https://www.ensembl.org/id/ENSSSCG00000004997" } ] } } ], "crossref": [ { "id": "F1SI15", "url": "https://alphafold.ebi.ac.uk/entry/F1SI15", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004997", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004997", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153928", "url": "https://www.ncbi.nlm.nih.gov/gene/100153928", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153928", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153928", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SI15", "url": "https://www.orthodb.org/?gene=F1SI15", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17204", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17204", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17204:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17204:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927155", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927155", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SI15", "url": "https://www.uniprot.org/uniprotkb/F1SI15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI15-1", "url": "https://www.uniprot.org/uniprotkb/F1SI15-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQNSHMDEYRNSNNGSTGNSSEVVIEQSADFSTEIMNVTEMEQSPDGSPTVTTTTEENETANTVDLPVTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETTSTIKGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVSLERRHGNMEEAERLLQDAIKNAKANNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNYGQYYPPPPT", "length": 666, "header": "tr|F1SI15-1|F1SI15_PIG Isoform 1 of Pre-mRNA-processing factor 39 OS=Sus scrofa OX=9823 GN=PRPF39 PE=3 SV=4 CANONICAL=F1SI15-1" }, "isoforms": [ { "isoform_ac": "F1SI15-1", "url": "https://www.uniprot.org/uniprotkb/F1SI15/entry#F1SI15-1", "sequence": { "sequence": "MQNSHMDEYRNSNNGSTGNSSEVVIEQSADFSTEIMNVTEMEQSPDGSPTVTTTTEENETANTVDLPVTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETTSTIKGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILRTFEECVLGLAMVRLRRVSLERRHGNMEEAERLLQDAIKNAKANNESSFYAIKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTSSSTQMIDGDLQANQAAYNYSAWYQYNYQNPWNYGQYYPPPPT", "length": 666, "header": "tr|F1SI15-1|F1SI15_PIG Isoform 1 of Pre-mRNA-processing factor 39 OS=Sus scrofa OX=9823 GN=PRPF39 PE=3 SV=4 CANONICAL=F1SI15-1" }, "locus": { "chromosome": "1", "start_pos": 175316568, "end_pos": 175300756, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005511.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005511.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005374.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005374.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SI15", "url": "https://www.uniprot.org/uniprotkb/F1SI15" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153928", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153928", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "U1 snRNP", "id": "GO:0005685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005685", "evidence": [ { "database": "UniProtKB", "id": "F1SI15", "url": "https://www.uniprot.org/uniprotkb/F1SI15" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SI15", "url": "https://www.uniprot.org/uniprotkb/F1SI15" } ], "pmid": "" }, { "name": "commitment complex", "id": "GO:0000243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000243", "evidence": [ { "database": "UniProtKB", "id": "F1SI15", "url": "https://www.uniprot.org/uniprotkb/F1SI15" } ], "pmid": "" }, { "name": "U2-type prespliceosome", "id": "GO:0071004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071004", "evidence": [ { "database": "UniProtKB", "id": "F1SI15", "url": "https://www.uniprot.org/uniprotkb/F1SI15" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA 5'-splice site recognition", "id": "GO:0000395", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000395", "evidence": [ { "database": "UniProtKB", "id": "F1SI15", "url": "https://www.uniprot.org/uniprotkb/F1SI15" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" }, { "start_pos": 487, "end_pos": 489, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 642, "end_pos": 644, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SI15-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 666, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SI15-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SI15" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 }, { "start_pos": 19, "end_pos": 21 }, { "start_pos": 364, "end_pos": 366 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 397, "end_pos": 399 }, { "start_pos": 487, "end_pos": 489 }, { "start_pos": 58, "end_pos": 60 }, { "start_pos": 608, "end_pos": 610 }, { "start_pos": 642, "end_pos": 644 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI43-1", "uniprot_ac": "F1SI43", "uniprot_id": "F1SI43_PIG", "mass": { "chemical_mass": 134379.0, "monoisotopic_mass": 134379.0 }, "refseq": {}, "gene_names": [ { "name": "CDAN1", "type": "recommended", "evidence": [ { "id": "F1SI43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI43" } ] } ], "protein_names": [ { "name": "Codanin 1", "type": "synonym", "evidence": [ { "id": "F1SI43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI43/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI43", "url": "https://www.uniprot.org/uniprotkb/F1SI43" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDAN1", "url": "https://www.uniprot.org/uniprotkb/F1SI43", "locus": { "chromosome": "1", "start_pos": 128655554, "end_pos": 128641430, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004719", "url": "https://www.ensembl.org/id/ENSSSCG00000004719" } ] } } ], "crossref": [ { "id": "F1SI43", "url": "https://alphafold.ebi.ac.uk/entry/F1SI43", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004719", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004719", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR028171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR28678", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28678", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28678:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28678:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15296", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15296", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SI43", "url": "https://www.uniprot.org/uniprotkb/F1SI43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI43-1", "url": "https://www.uniprot.org/uniprotkb/F1SI43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVLESLLREELSVAAAVRWIAHSAQSSEDDPGEAAALSSLRPLRKEFVPFLLNFLREQSSRVLPQGPPTPAKAPGSSAALPGRPGGPPRGGRGARSQLFPPTEPSSAAAAEAPSARRGGRRRGPGPARERGGPRGLEEGVSGESLPWAGGRRPKSSGSPSSPSLARSDPPNLSNLEEFPPVGSVPPGSAGTKPSRRINPTPVSEERSLSKPKTCFTSPPINCVPSSQPSVLDTSPWGHGLPSGCRSLQEEREMLRKERSKQLQQSSAPACPTPESGCPHPMRTGNLTAEPADPARVSYRRRLELVALVYSSCIAENLVPNLFLELFFVLQLLTARRMVVAKDSDLEPSPGPIDSLESPLFQSVHDCVFFAVQVLEHQFHILSHLDKGTLKLLAENERLLCFSPVLQGRLRAAYEGSVAKVSLAMPPSAQAVSFQPETDNRANFSSDRAFHTFKKQRDVFYEVLREWEDRHEEPGWDFEKGLGSRIRAMMSQLSAACSHSHFVRLFQKQLLQMCQSPGGAGGTVLGETPDVLNMLGADKLGRLRRLQERLVAPQSSGGPCPPPTFPGCQGFFRDFILSASSFQFNQHLMDSLSLKIRELNSLALPQPEPSDEDGESDVDWQGERRQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTRELQDSILALRSQVPPALDVRALLQQGLRARRAVLTVPWLVEFLSLADHIVPMLDYYRSIFTLLLHLHRSLVLSKESEGEMCFLNKLLLLAVLGWLFQIPTVPEDLFFLGDGQLDAFEVNTVVSEHGLDSMPVVDQHLLYTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTGLGAQPPRTTQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVRQAESLLQEQLVTQGREGGDPAQLLEILCSQLCPHGAQALTLGREFCQKKSPGAVQALLPEETPAAVLSSAENIAVGLATEKACAWLSANITALIRREVKAAVSRTLRAQGPESATRGERRGCSRACEHHAPLPSHLISEIKDVLSLAVGPRDPEEGVSPEHLERLLGQLGETLQCRQFLCPPAEQHLAKCSVELASLLVADQIPVLGPPAQHRLERGQARRLLLMLLSLWKDDFQVPVPLQLLLSPRNVGLLADTRPREWDLLLFLLRELVEKGLMGRMEIEACLGGLHEAQWPGDFVEELATLFNLFPAEPQVPEPQLRACELVQPNRGTLLAQS", "length": 1229, "header": "tr|F1SI43-1|F1SI43_PIG Isoform 1 of Codanin 1 OS=Sus scrofa OX=9823 GN=CDAN1 PE=4 SV=5 CANONICAL=F1SI43-1" }, "isoforms": [ { "isoform_ac": "F1SI43-1", "url": "https://www.uniprot.org/uniprotkb/F1SI43/entry#F1SI43-1", "sequence": { "sequence": "MAAVLESLLREELSVAAAVRWIAHSAQSSEDDPGEAAALSSLRPLRKEFVPFLLNFLREQSSRVLPQGPPTPAKAPGSSAALPGRPGGPPRGGRGARSQLFPPTEPSSAAAAEAPSARRGGRRRGPGPARERGGPRGLEEGVSGESLPWAGGRRPKSSGSPSSPSLARSDPPNLSNLEEFPPVGSVPPGSAGTKPSRRINPTPVSEERSLSKPKTCFTSPPINCVPSSQPSVLDTSPWGHGLPSGCRSLQEEREMLRKERSKQLQQSSAPACPTPESGCPHPMRTGNLTAEPADPARVSYRRRLELVALVYSSCIAENLVPNLFLELFFVLQLLTARRMVVAKDSDLEPSPGPIDSLESPLFQSVHDCVFFAVQVLEHQFHILSHLDKGTLKLLAENERLLCFSPVLQGRLRAAYEGSVAKVSLAMPPSAQAVSFQPETDNRANFSSDRAFHTFKKQRDVFYEVLREWEDRHEEPGWDFEKGLGSRIRAMMSQLSAACSHSHFVRLFQKQLLQMCQSPGGAGGTVLGETPDVLNMLGADKLGRLRRLQERLVAPQSSGGPCPPPTFPGCQGFFRDFILSASSFQFNQHLMDSLSLKIRELNSLALPQPEPSDEDGESDVDWQGERRQFAVVLLSLRLLAKFLGFVAFLPYRGPEPPPTRELQDSILALRSQVPPALDVRALLQQGLRARRAVLTVPWLVEFLSLADHIVPMLDYYRSIFTLLLHLHRSLVLSKESEGEMCFLNKLLLLAVLGWLFQIPTVPEDLFFLGDGQLDAFEVNTVVSEHGLDSMPVVDQHLLYTCCPYIGELRKLLASWVSGSSGRSGGFVRKITPTTTTGLGAQPPRTTQGLQAQLAQAFFHNQPPSLRRTVEFVAERIGSNCVKHIKATLVADLVRQAESLLQEQLVTQGREGGDPAQLLEILCSQLCPHGAQALTLGREFCQKKSPGAVQALLPEETPAAVLSSAENIAVGLATEKACAWLSANITALIRREVKAAVSRTLRAQGPESATRGERRGCSRACEHHAPLPSHLISEIKDVLSLAVGPRDPEEGVSPEHLERLLGQLGETLQCRQFLCPPAEQHLAKCSVELASLLVADQIPVLGPPAQHRLERGQARRLLLMLLSLWKDDFQVPVPLQLLLSPRNVGLLADTRPREWDLLLFLLRELVEKGLMGRMEIEACLGGLHEAQWPGDFVEELATLFNLFPAEPQVPEPQLRACELVQPNRGTLLAQS", "length": 1229, "header": "tr|F1SI43-1|F1SI43_PIG Isoform 1 of Codanin 1 OS=Sus scrofa OX=9823 GN=CDAN1 PE=4 SV=5 CANONICAL=F1SI43-1" }, "locus": { "chromosome": "1", "start_pos": 128654894, "end_pos": 128641452, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005211.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005211.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005085.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005085.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 202, "start_aa": "Thr", "end_pos": 202, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr202", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 274, "start_aa": "Thr", "end_pos": 274, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr274", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 71, "start_aa": "Thr", "end_pos": 71, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr71", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SI43", "url": "https://www.uniprot.org/uniprotkb/F1SI43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SI43", "url": "https://www.uniprot.org/uniprotkb/F1SI43" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SI43", "url": "https://www.uniprot.org/uniprotkb/F1SI43" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SI43", "url": "https://www.uniprot.org/uniprotkb/F1SI43" } ], "pmid": "" }, { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "F1SI43", "url": "https://www.uniprot.org/uniprotkb/F1SI43" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "import into nucleus", "id": "GO:0051170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051170", "evidence": [ { "database": "UniProtKB", "id": "F1SI43", "url": "https://www.uniprot.org/uniprotkb/F1SI43" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "F1SI43", "url": "https://www.uniprot.org/uniprotkb/F1SI43" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" }, { "start_pos": 982, "end_pos": 984, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SI43-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1229, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SI43-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SI43" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SI43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI43" }, { "id": "PF15296", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15296" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Codanin-1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 787, "end_pos": 901, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 71, 202, 274 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 173, "end_pos": 175 }, { "start_pos": 287, "end_pos": 289 }, { "start_pos": 444, "end_pos": 446 }, { "start_pos": 982, "end_pos": 984 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI95-1", "uniprot_ac": "F1SI95", "uniprot_id": "F1SI95_PIG", "mass": { "chemical_mass": 79603.0, "monoisotopic_mass": 79603.0 }, "refseq": { "ac": "XP_020938777", "name": "LARGE xylosyl- and glucuronyltransferase 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938777" }, "gene_names": [ { "name": "LARGE2", "type": "recommended", "evidence": [ { "id": "F1SI95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI95" } ] }, { "name": "LARGE2", "type": "synonym", "evidence": [ { "id": "XP_020938777", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938777" } ] } ], "protein_names": [ { "name": "LARGE xylosyl- and glucuronyltransferase 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020938777", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938777" } ] }, { "name": "LARGE xylosyl- and glucuronyltransferase 2", "type": "synonym", "evidence": [ { "id": "F1SI95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI95/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Bifunctional glycosyltransferase with both alpha-1,3-xylosyltransferase and beta-1,3-glucuronyltransferase activities involved in the maturation of alpha-dystroglycan (DAG1) by glycosylation leading to DAG1 binding to laminin G-like domain-containing extracellular proteins with high affinity and in a phosphorylated-O-mannosyl trisaccharide dependent manner. Elongates the glucuronyl-beta-1,4-xylose-beta disaccharide primer structure by adding repeating units [-3-Xylose-alpha-1,3-GlcA-beta-1-] to produce a heteropolysaccharide. Supports the maturation of DAG1 more effectively than LARGE1. In addition, can modify both heparan sulfate (HS)- and chondroitin/dermatan sulfate (CS/DS)-proteoglycans (PGs), namely GPC4, with a glycosaminoglycan (GAG)-like polysaccharide composed of xylose and glucuronic acid to confer laminin binding.", "evidence": [ { "database": "UniProtKB", "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95#function" }, { "database": "UniProtKB", "id": "ARBA00045795", "url": "https://www.uniprot.org/uniprotkb/ARBA00045795#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LARGE2", "url": "https://www.uniprot.org/uniprotkb/F1SI95", "locus": { "chromosome": "2", "start_pos": 16545448, "end_pos": 16550888, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013266", "url": "https://www.ensembl.org/id/ENSSSCG00000013266" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013266", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013266", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06431", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06431", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517024", "url": "https://www.ncbi.nlm.nih.gov/gene/100517024", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002495", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002495", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051292", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051292", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LPCIWNV", "url": "https://omabrowser.org/oma/group/LPCIWNV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12270", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12270", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12270:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12270:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13896", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13896", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9939291", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9939291", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020938777", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938777", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "57336", "url": "https://www.rhea-db.org/rhea/57336", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "67924", "url": "https://www.rhea-db.org/rhea/67924", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "68368", "url": "https://www.rhea-db.org/rhea/68368", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI95-1", "url": "https://www.uniprot.org/uniprotkb/F1SI95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPRGRPRALGAAALLLLLLLLLIGFFLFGGDLDYGRLRPLGAVALDRDPPADHGGHNRSDCVPPRPLPPKCELLQVAIVCAGHNSSRDVITLVKSMLFYRKNPLHLHLVTDAVARNILETLFHTWMVPAVRVSFYDADELKPQVSWIPNKHYSGLYGLMKLVLPGALPPDLARVIVLDTDVTFASNIAELWALFAHFSDKQVIGLVENQSDWYLGNLWRNHRPWPALGRGFNTGVILLRLDRLRQAGWEQMWKLIATQELLTLPATSLADQDIFNAVIKEHPWLVQPLPCVWNVQLSDHTLAERCYSEASDLKVIHWNSPKKLRVKNKHVESFRNLHLTFLEYDGNLLRRELFGCPCPPPPGAEQLQRALAQLDEEDACFEFRQQQLTVHRVHITFLPHKPPPPQPYDVTLVAQLSMDRLQMLEALCRHWPGPMSLALYLTDAEAQQFLRFVETSAVLSARQNVAYHVVYREGPLYPINQLRNVALAQALTPYVFLSDIDFLPAYSLYHYLRASIEQLELGTGGRKVALVVPAFETLHYRFSFPSSKAELLALLDAGSLYTFRYHEWPRGHAPTDYARWREAQAPYRVQWAADYEPYVVVPRDCPRYDPRFVGFGWNKVAHIVELDAQEYELLVLPEAFIIHLPHAPSLDISRFRSSPTYRDCLQALKDEFHQDLSRHYGAAALKYLTALQQPRGPT", "length": 698, "header": "tr|F1SI95-1|F1SI95_PIG Isoform 1 of LARGE xylosyl- and glucuronyltransferase 2 OS=Sus scrofa OX=9823 GN=LARGE2 PE=3 SV=3 CANONICAL=F1SI95-1" }, "isoforms": [ { "isoform_ac": "F1SI95-1", "url": "https://www.uniprot.org/uniprotkb/F1SI95/entry#F1SI95-1", "sequence": { "sequence": "MLPRGRPRALGAAALLLLLLLLLIGFFLFGGDLDYGRLRPLGAVALDRDPPADHGGHNRSDCVPPRPLPPKCELLQVAIVCAGHNSSRDVITLVKSMLFYRKNPLHLHLVTDAVARNILETLFHTWMVPAVRVSFYDADELKPQVSWIPNKHYSGLYGLMKLVLPGALPPDLARVIVLDTDVTFASNIAELWALFAHFSDKQVIGLVENQSDWYLGNLWRNHRPWPALGRGFNTGVILLRLDRLRQAGWEQMWKLIATQELLTLPATSLADQDIFNAVIKEHPWLVQPLPCVWNVQLSDHTLAERCYSEASDLKVIHWNSPKKLRVKNKHVESFRNLHLTFLEYDGNLLRRELFGCPCPPPPGAEQLQRALAQLDEEDACFEFRQQQLTVHRVHITFLPHKPPPPQPYDVTLVAQLSMDRLQMLEALCRHWPGPMSLALYLTDAEAQQFLRFVETSAVLSARQNVAYHVVYREGPLYPINQLRNVALAQALTPYVFLSDIDFLPAYSLYHYLRASIEQLELGTGGRKVALVVPAFETLHYRFSFPSSKAELLALLDAGSLYTFRYHEWPRGHAPTDYARWREAQAPYRVQWAADYEPYVVVPRDCPRYDPRFVGFGWNKVAHIVELDAQEYELLVLPEAFIIHLPHAPSLDISRFRSSPTYRDCLQALKDEFHQDLSRHYGAAALKYLTALQQPRGPT", "length": 698, "header": "tr|F1SI95-1|F1SI95_PIG Isoform 1 of LARGE xylosyl- and glucuronyltransferase 2 OS=Sus scrofa OX=9823 GN=LARGE2 PE=3 SV=3 CANONICAL=F1SI95-1" }, "locus": { "chromosome": "2", "start_pos": 16550605, "end_pos": 16545711, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014490.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014490.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014098.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014098.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9939291", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9939291", "resource": "Reactome", "description": "Matriglycan biosynthesis on DAG1" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7JZU2-1", "protein_name": "LARGE xylosyl- and glucuronyltransferase 2 isoform X1", "gene_name": "Large2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPRGRPRALGAVTLLLLLLLLVGFFLFGRDPEYGLRAAATLDGDLYGSRNRSAASLQPLLPPKCEVGVPPQLLHVAIVCAGYNSSREVITLVKSLLFYRKNPLHLHLVTDAIARNILETLFRTWMVPAVVIRFYDAEELKPLISWIPNKHYSGLYGLMKLVLPSILPLSLARVIVLDTDVTFSSDIAELWALFAHFSDKQVVGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLWLDRLRQTGWEQMWKLIAKQELLTLMATSLADQDVFNAVIKEHPELVHPLPCVWNVQLSDHTLAERCYLEAADLKVIHWNSPKKLRVKNKHAEFFRNLHLTFLGYDGKLLRRELFGCPNQLPPGAEQLQQALAQLDEEEPCFEFRQQQLSVHRVHITFLPHQPPPPRPHDVTLVAQLSMDRLQMLEALCRHWPGPMSLALYLTDAEAQQFLHFVETSPVLSARKDVAYHIVYREGPLYPVNQLRNVALAQALTPYVFLSDIDFLPAYSLYDYLRASIEQLELGSQRKAALVVPAFETLHYRLSFPNSKAELLTLLDAGSLYTFRYHEWPQGHAPTDYARWREAKAPYHVQWAADYEPYVVVPRDCPRYDPRFVGFGWNKVAHIIELDAQEYELLVLPEAFSIHLPHAPSLDISRFRSSPTYRHCLQTLKEEFHQDLSRRYGAAALKYLTALQQSQSRA", "length": 696 }, "evidence": [ { "id": "F1SI95", "url": "https://omabrowser.org/oma/group/F1SI95/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1NX24-1", "protein_name": "LARGE xylosyl- and glucuronyltransferase 2", "gene_name": "LARGE2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLCSWRVKLKLLLATITLAVLLSWLYLFVGSLEYGRFLLLPPCLGEQPSRDVEREALASQVRRVEEENQQLRMQLGQVQAEGSDGNPQWAASAEDGPPLGGERNNRTACPKQRMVRKCELLHVAIVCAGHNASRDVVTLVKSILFHRKNPLHFHFITDSVAHQILQTLFQSWMVPSIHVSFYNADDLKPEVSWIPNKHYSGIYGLMKLTLTKALPSNLSKVIVLDTDITFATDIAELWAVFGKFSEKQVIGLVENQSDWYLGNLWKNHKPWPALGRGFNTGVILLLLDRLRRLGWEQMWRLTAERELMSMLSTSLADQDIFNAVIKQNPALVYRLPCFWNVQLSDHTRSELCYTEVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELFGCASLPSPPSDQLQQALEELDEDDPCYDFRRQHLTQHRVHLFFLQYEFLALPNPTDVTLVAQLSMDRLQMLEAICKHWAGPISLALYMSDAEAQQFLRYAQASEVLSARRNVAYHIVYKEGQFYPINLLRNVALANTQTPYVFLTDIDFLPMYGLYDYLRNSIQQLELPHRKAALIVPAFETLHYRLTFPKSKAELLSMLDMGSLYTFRYHVWPKGHAPTDYAKWRTATVPYRVAWQPDFEPYVVVRRDCPKYDQRFVGFGWNKVSHIMELDAQEYELLVLPNAFMIHMPHAPSFDISKFRLSAGYRGCLQTLREEFHQDLSRKYGAAALKYLTAERNL", "length": 739 }, "evidence": [ { "id": "F1SI95", "url": "https://omabrowser.org/oma/group/F1SI95/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5XPT3-1", "protein_name": "Xylosyl- and glucuronyltransferase LARGE2", "gene_name": "Large2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPRGRPRAMGAAVLLLLLLLVVGFFLFGRDPDYGLGTTATLDEDPYRSRNLSASSPQLLLPPKCEMLHVAIVCAGYNSSREIITLTKSLLFYRKNPLHLHLITDAVARNILETLFRTWMVPAVVVSFYDAEELKPLVSWIPNKHYSGLYGLMKLVLPSILPPSLARVIVLDTDVTFSSDIVELWALFDHFSDKQVVGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLWLDRLQQTGWEQMWKVTAKRELLTLMATSLADQDIFNAVIKEHPHLVHPLPCVWNVQLSDHTRAERCYLEAADLKVIHWNSPKKLRVKNKHAEFFRNLHLTFLGYDGKLLRRELFGCPNQFPPGAEQLQQALTQLDEEEPCFEFRQQQLTVHRVHITFLPHQPPPPQPHDVTLVAQLSMDRLQMLEALCRHWPGPMSLALYLTDEEAQQFLHFVETSPVLSMRKDVAYHVVYRDGPLYPVNQLRNVALAQALTPYVFLSDIDFLPAYSLYDYLRASIEQLELDSRRKTALVVPAFETLHYRFSFPNSKAELLTLLDAGSLHTFRYHEWPQGHSSTDYSRWREAQAPYSVQWSADYEPYVVVPRDCPRYDPRFVGFGWNKVAHIIELDAQEYEFLVLPEAFSIHLPHAPSLDISRFRSSPTYRNCLQALKEEFHQDLSRRYGSAALKYLTALQQARSRA", "length": 690 }, "evidence": [ { "id": "F1SI95", "url": "https://omabrowser.org/oma/group/F1SI95/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q66PG1-1", "protein_name": "Xylosyl- and glucuronyltransferase LARGE2s", "gene_name": "large2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLCPCRGKLKLLVVSLSFVILFTWLYLLVGNSENGRSLLLSACLVESTEARLLERDVLASRVREVEEENRQIRLQLSQSQGLAGQPAEGNYGNQQWVASADTGPEDVENTAEERANHSECSRSPTAEKCELLHVACVCAGHNASRDVVTLVKSILFHRRNPLHFHFITDTVANQILSTLFQSWMVPSVQVSFYDADELKSEVSWIPNKHYSGIYGLMKLTLTKALPSNLSKVIVLDTDITFATDIAELWAIFRKFTEKQVIGLVENQSDWYLGNLWKNHKPWPALGRGFNTGVILLYLERLRRMGWEQMWRLTAERELMSMLSTSLADQDIFNAFIKQNPVLVHQLPCFWNVQLSDHTRSEQCYTEVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELFGCPSQASSESTVLQQALEELDEDDQCYDFRRERIMLHRVHLYFLQYEYSPTDDGTDITLVAQLSMDRLQMLEAICKHWEGPISLALYMSDAEAQQFLRYAQASEVLKNRKNVGYHIVYKEGQFYPVNLVRNVALRNVNTPYVFLTDVDFLPMYGLYDYLRKSIVQLDMANTKKALVVPAFETLRYRLSFPKSKAELLSMLDMGTLYTFRYHVWTKGHAPTNYAKWRTATTPYKVEWEADFEPYVVVRRDCPEYDQRFVGFGWNKVSHIMELDAQEYDLIVLPNAFMIHMPHAPSFDISKFRSSPSYRYCLTTLKDEFHQDLSRKYGSAALKYLTAQRNI", "length": 750 }, "evidence": [ { "id": "F1SI95", "url": "https://omabrowser.org/oma/group/F1SI95/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6P7A1-1", "protein_name": "Xylosyl- and glucuronyltransferase LARGE2", "gene_name": "Large2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGRPRALGAALLLLLLLVVGFFLFGRDPEYGLGTTATLDGDPYGSRNRSTSSLQLLLPPKCEMLHVAIVCAGYNSSREIITLMKSVLFYRKNPLHLHLITDAVARNILETLFRTWMVPAVVVSFYDAEELKPLVSWIPNKHYSGLYGLMKLVLPSVLPLSLARVIVLDTDVTFSSDIMELWALFGHFSDKQVVGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLWLDRLQQIGWEQMWKLTAKRELLTLTATSLADQDIFNAVIKEHPELVHPLPCVWNVQLSDHTLAERCYLEAADLKVIHWNSPKKLRVKNKHAEFFRDLHLTFLGFDGKLLCRELFGCPNQFPPGVEQLQQALAQLDEEEPCFEFRQQQLTVHRVHITFLSHQPPPPRPHDVTLVAQLSMDRLQMLEALCRHWRGPMSLALYLTDAEAQQFLRFVETSPVLSARKDVAYHVVYRDGPLYPVNQLRNVALAQALTPYVFLSDIDFLPAYSLYDYLRASIEQLALGRRQRKAALVVPAFETLHYRFSFPNSKAELLTLLDAGSLHTFRYHEWPQGHASTDYTRWREAQAPYRVQWSADYEPYVVVPRDCPRYDPRFVGFGWNKVAHIIELDAQEYEFLVLPEAFSIHLPHAPSLDISRFRSSPTYRDCLQALKEEFHQDLSRRYGSAALKYLTALQQSRSRA", "length": 690 }, "evidence": [ { "id": "F1SI95", "url": "https://omabrowser.org/oma/group/F1SI95/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8N3Y3-1", "protein_name": "Xylosyl- and glucuronyltransferase LARGE2", "gene_name": "LARGE2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLPRGRPRALGAAALLLLLLLLGFLLFGGDLGCERREPGGRAGAPGCFPGPLMPRVPPDGRLRRAAALDGDPGAGPGDHNRSDCGPQPPPPPKCELLHVAIVCAGHNSSRDVITLVKSMLFYRKNPLHLHLVTDAVARNILETLFHTWMVPAVRVSFYHADQLKPQVSWIPNKHYSGLYGLMKLVLPSALPAELARVIVLDTDVTFASDISELWALFAHFSDTQAIGLVENQSDWYLGNLWKNHRPWPALGRGFNTGVILLRLDRLRQAGWEQMWRLTARRELLSLPATSLADQDIFNAVIKEHPGLVQRLPCVWNVQLSDHTLAERCYSEASDLKVIHWNSPKKLRVKNKHVEFFRNFYLTFLEYDGNLLRRELFVCPSQPPPGAEQLQQALAQLDEEDPCFEFRQQQLTVHRVHVTFLPHEPPPPRPHDVTLVAQLSMDRLQMLEALCRHWPGPMSLALYLTDAEAQQFLHFVEASPVLAARQDVAYHVVYREGPLYPVNQLRNVALAQALTPYVFLSDIDFLPAYSLYDYLRASIEQLGLGSRRKAALVVPAFETLRYRFSFPHSKVELLALLDAGTLYTFRYHEWPRGHAPTDYARWREAQAPYRVQWAANYEPYVVVPRDCPRYDPRFVGFGWNKVAHIVELDAQEYELLVLPEAFTIHLPHAPSLDISRFRSSPTYRDCLQALKDEFHQDLSRHHGAAALKYLPALQQPQSPARG", "length": 721 }, "evidence": [ { "id": "F1SI95", "url": "https://omabrowser.org/oma/group/F1SI95/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "xylosyltransferase activity", "id": "GO:0042285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042285", "evidence": [ { "database": "UniProtKB", "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95" } ], "pmid": "" }, { "name": "glucuronosyltransferase activity", "id": "GO:0015020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015020", "evidence": [ { "database": "UniProtKB", "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein O-linked glycosylation via mannose", "id": "GO:0035269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035269", "evidence": [ { "database": "UniProtKB", "id": "F1SI95", "url": "https://www.uniprot.org/uniprotkb/F1SI95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "57336", "name": "", "equation": "3-O-[beta-D-GlcA-(1->3)-beta-D-Xyl-(1->4)-Rib-ol-P-Rib-ol-P-3-beta-D-GalNAc-(1->3)-beta-D-GlcNAc-(1->4)-(O-6-P-alpha-D-Man)]-Thr-[protein] + UDP-alpha-D-xylose = 3-O-[alpha-D-Xyl-(1->3)-beta-D-GlcA-(1->4)-beta-D-Xyl-(1->4)-Rib-ol-P-Rib-ol-P-3-beta-D-GalNAc-(1->3)-beta-D-GlcNAc-(1->4)-(O-6-P-alpha-D-Man)]-Thr-[protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "57336", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/57336" } ] }, { "id": "67924", "name": "", "equation": "3-O-{(1->[3)-alpha-D-Xyl-(1->3)-beta-D-GlcA-(1->](n)-4)-beta-D-Xyl-(1->4)-Rib-ol-P-Rib-ol-P-3-beta-D-GalNAc-(1->3)-beta-D-GlcNAc-(1->4)-O-6-P-alpha-D-Man}-L-Thr-[protein] + UDP-alpha-D-glucuronate = 3-O-{beta-D-GlcA-(1->[3)-alpha-D-Xyl-(1->3)-beta-D-GlcA-(1->](n)-4)-beta-D-Xyl-(1->4)-Rib-ol-P-Rib-ol-P-3-beta-D-GalNAc-(1->3)-beta-D-GlcNAc-(1->4)-O-6-P-alpha-D-Man}-L-Thr-[protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67924", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67924" } ] }, { "id": "68368", "name": "", "equation": "3-O-{beta-D-GlcA-(1->[3)-alpha-D-Xyl-(1->3)-beta-D-GlcA-(1->](n)-4)-beta-D-Xyl-(1->4)-Rib-ol-P-Rib-ol-P-3-beta-D-GalNAc-(1->3)-beta-D-GlcNAc-(1->4)-O-6-P-alpha-D-Man}-L-Thr-[protein] + UDP-alpha-D-xylose = 3-O-{(1->[3)-alpha-D-Xyl-(1->3)-beta-D-GlcA-(1->](n+1)-4)-beta-D-Xyl-(1->4)-Rib-ol-P-Rib-ol-P-3-beta-D-GalNAc-(1->3)-beta-D-GlcNAc-(1->4)-O-6-P-alpha-D-Man}-L-Thr-[protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "68368", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/68368" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 209, "end_pos": 211 }, { "start_pos": 58, "end_pos": 60 }, { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SI98-1", "uniprot_ac": "F1SI98", "uniprot_id": "F1SI98_PIG", "mass": { "chemical_mass": 57221.0, "monoisotopic_mass": 57221.0 }, "refseq": { "ac": "XP_003122877", "name": "cyclic AMP-responsive element-binding protein 3-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122877" }, "gene_names": [ { "name": "CREB3L1", "type": "recommended", "evidence": [ { "id": "F1SI98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ] }, { "name": "CREB3L1", "type": "synonym", "evidence": [ { "id": "XP_003122877", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122877" } ] } ], "protein_names": [ { "name": "cAMP responsive element binding protein 3 like 1", "type": "synonym", "evidence": [ { "id": "F1SI98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI98/entry#names_and_taxonomy" } ] }, { "name": "cyclic AMP-responsive element-binding protein 3-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_003122877", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122877" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CREB3L1", "url": "https://www.uniprot.org/uniprotkb/F1SI98", "locus": { "chromosome": "2", "start_pos": 16186206, "end_pos": 16220940, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013263", "url": "https://www.ensembl.org/id/ENSSSCG00000013263" } ] } } ], "crossref": [ { "id": "F1SI98", "url": "https://alphafold.ebi.ac.uk/entry/F1SI98", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013263", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013263", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14689", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14689", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516663", "url": "https://www.ncbi.nlm.nih.gov/gene/100516663", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516663", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516663", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MEHGAWA", "url": "https://omabrowser.org/oma/group/MEHGAWA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SI98", "url": "https://www.orthodb.org/?gene=F1SI98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46004", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46004", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46004:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46004:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00170", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00170", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122877", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122877", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SI98-1", "url": "https://www.uniprot.org/uniprotkb/F1SI98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAVLEPFPADRLFPGSSFLDLGDLNESDFLNNAHFPEHLDHFAENMEDFSNDLFSSFFDDPVLDEKSPLLDMELDSPTPGIQAEHSYSLSGDSAPQSPIVPIKMEDTTQDVEHGAWVLGHKLCSVMVKQEQSPELPVDPLAASSAMAAAAAMATTPLLGLSPLSRLPIPHQAPGEMTQLPVIKAEPQEVNPFLKVTPEDLVQMPPTPPSSHGSDSDGSQSPRSLPPSSPIRPMARSSTAISTSPLLTAPHKLQGTSGPLLLTEEEKRTLIAEGYPIPTKLPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENANRTLLQQLQKLQTLVTNKISRPYKMAATQTGTCLMVAALCFVLVLGSLVPCLPEFSSGSQTVKEDPMATDSVYTASQMPSRSLLFYDEGAGSWEDGRSALLPVEPPDGWEIKPGGPAEQRPQDHLQHDHLDSTHETSKYLSEAWPKDVAGNSTSPDFSHPKEWFHERDLEPNTTIQLS", "length": 520, "header": "tr|F1SI98-1|F1SI98_PIG Isoform 1 of cAMP responsive element binding protein 3 like 1 OS=Sus scrofa OX=9823 GN=CREB3L1 PE=3 SV=3 CANONICAL=F1SI98-1" }, "isoforms": [ { "isoform_ac": "F1SI98-1", "url": "https://www.uniprot.org/uniprotkb/F1SI98/entry#F1SI98-1", "sequence": { "sequence": "MDAVLEPFPADRLFPGSSFLDLGDLNESDFLNNAHFPEHLDHFAENMEDFSNDLFSSFFDDPVLDEKSPLLDMELDSPTPGIQAEHSYSLSGDSAPQSPIVPIKMEDTTQDVEHGAWVLGHKLCSVMVKQEQSPELPVDPLAASSAMAAAAAMATTPLLGLSPLSRLPIPHQAPGEMTQLPVIKAEPQEVNPFLKVTPEDLVQMPPTPPSSHGSDSDGSQSPRSLPPSSPIRPMARSSTAISTSPLLTAPHKLQGTSGPLLLTEEEKRTLIAEGYPIPTKLPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENANRTLLQQLQKLQTLVTNKISRPYKMAATQTGTCLMVAALCFVLVLGSLVPCLPEFSSGSQTVKEDPMATDSVYTASQMPSRSLLFYDEGAGSWEDGRSALLPVEPPDGWEIKPGGPAEQRPQDHLQHDHLDSTHETSKYLSEAWPKDVAGNSTSPDFSHPKEWFHERDLEPNTTIQLS", "length": 520, "header": "tr|F1SI98-1|F1SI98_PIG Isoform 1 of cAMP responsive element binding protein 3 like 1 OS=Sus scrofa OX=9823 GN=CREB3L1 PE=3 SV=3 CANONICAL=F1SI98-1" }, "locus": { "chromosome": "2", "start_pos": 16220483, "end_pos": 16186899, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014487.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014487.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014095.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014095.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 207, "start_aa": "Thr", "end_pos": 207, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr207", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 79, "start_aa": "Thr", "end_pos": 79, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr79", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516663", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516663", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E7FCG3-1", "protein_name": "Cyclic AMP-responsive element-binding protein 3-like protein 1 isoform X1", "gene_name": "creb3l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDTILDNFASDKLFPNSNLLDLEDLNESDFLSNVHFSEQMEDFSNDLFNSFFDDHLLAERNPLLDMDLDPPNPDIQAEHSYSLSEDSAPQSPSIPIKSDDDADSEAMWSFSQDLTAILVKQEPSLMSENCPETAPPLANSSTCSPPLTLAPPPQRNHSGEKGSKGLSSNSVPAIKAEPREANQFLNVPSEEHLRLPPTPPSSHGSDSDGSQSPHSLPPLSPGHLQSPHSLPPSSPARLQARTSTAISSSPLLTAPHKLQGTSGPLMLTEEEKRTLIAEGYPVPNKLPLTKTEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVENYTSENNELWKKVETLENANRSLLQQLQRLQALVSGKVPRSCKIASTQTGTCLMVVALCFVLVLGSLAPCLPELSLYSSSLSSSSSHTVKSAPLPSGDLYTTSQVRSRSLLFYDEGVPVEDGHRGLLSVERTEGVPRHVQDVKDSSHKQDHSALVSRYLSEAQPESASYSNTSAAPLRPPEPHYHSRKRDPEGGAEYF", "length": 526 }, "evidence": [ { "id": "F1SI98", "url": "https://omabrowser.org/oma/group/F1SI98/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q66HA2-1", "protein_name": "Cyclic AMP-responsive element-binding protein 3-like protein 1", "gene_name": "Creb3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDAVLEPFPADRLFPGSSFLDLGDLNESDFLNNAHFPEHLDHFVENMEDFSNDLFSSFFDDPVLDEKSPLLDMELDSPAPGIQAEHSYSLSGDSAPQSPLVPVKMEDTTQDMEHGAWALGNKLCSIMVKQEQSPELPVDPLAASSAMAAATMATPPLLGLSPISRLPIPHQAPGEMTQLPVIKAEPPEMSQFLKVTQEDLVQMPPTPPSSHGSDSDGSQSPRSLPPSSPVRPMARSSTAISTSPLLTAPHKLQGTSGPLLLTEEEKRTLIAEGYPIPTKLPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETYTSENNELWKKVETLETANRTLLQQLQKLQTLVTSKISRPYKMAATQTGTCLMVAALCFVLVLGSLAPCLPAFSSGSKTVKEDPVAADSVYAASQMPSRSLLFYDDGAGSWEDGHRGALLPVEPPEGWELKPGGPAEPRPQDHLRHDHADSIHETTKYLRETWPEDTEDNGASPNFSHPKEWFHDRDLGPNTTIKLS", "length": 520 }, "evidence": [ { "id": "F1SI98", "url": "https://omabrowser.org/oma/group/F1SI98/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96BA8-1", "protein_name": "Cyclic AMP-responsive element-binding protein 3-like protein 1", "gene_name": "CREB3L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDAVLEPFPADRLFPGSSFLDLGDLNESDFLNNAHFPEHLDHFTENMEDFSNDLFSSFFDDPVLDEKSPLLDMELDSPTPGIQAEHSYSLSGDSAPQSPLVPIKMEDTTQDAEHGAWALGHKLCSIMVKQEQSPELPVDPLAAPSAMAAAAAMATTPLLGLSPLSRLPIPHQAPGEMTQLPVIKAEPLEVNQFLKVTPEDLVQMPPTPPSSHGSDSDGSQSPRSLPPSSPVRPMARSSTAISTSPLLTAPHKLQGTSGPLLLTEEEKRTLIAEGYPIPTKLPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENANRTLLQQLQKLQTLVTNKISRPYKMAATQTGTCLMVAALCFVLVLGSLVPCLPEFSSGSQTVKEDPLAADGVYTASQMPSRSLLFYDDGAGLWEDGRSTLLPMEPPDGWEINPGGPAEQRPRDHLQHDHLDSTHETTKYLSEAWPKDGGNGTSPDFSHSKEWFHDRDLGPNTTIKLS", "length": 519 }, "evidence": [ { "id": "F1SI98", "url": "https://omabrowser.org/oma/group/F1SI98/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z125-1", "protein_name": "Cyclic AMP-responsive element-binding protein 3-like protein 1", "gene_name": "Creb3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDAVLEPFPADRLFPGSSFLDLGDLNESDFLNNAHFPEHLDHFVENMEDFSNDLFSSFFDDPVLDEKSALLDMELDSPAPGIQAEHSYSLSGDSAPQSPLVPVKMEDTTQDVEHGAWALGNKLCSIMVKQEQSPELPVDPLAASSAMAAAAAMATPPLLGLSPMPRLPIPHQAPGEMTQLPVIKAEPPEMSQFLKVTPEDLVQMPPTPPSSHGSDSDGSQSPRSLPPSSPVRPMARSSTAISTSPLLTAPHKLQGTSGPLLLTEEEKRTLIAEGYPIPTKLPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETYTSENNELWKKVETLETANRTLLQQLQKLQTLVTSKISRPYKMAATQTGTCLMVAALCFVLVLGSLVPCLPAFSSGSMTVKEDPIAADSVYAASQMPSRSLLFYDDGAGSWEDGRGALLPVEPPEGWELKPGGPAEQRPQDHLRHDRADSIHETTKYLRETWPEDTDDNGTSPNFSHPEWFHDRDLGPNTTIKLS", "length": 519 }, "evidence": [ { "id": "F1SI98", "url": "https://omabrowser.org/oma/group/F1SI98/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "negative regulation of gene expression", "id": "GO:0010629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010629", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "positive regulation of collagen biosynthetic process", "id": "GO:0032967", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032967", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "negative regulation of fibroblast growth factor receptor signaling pathway", "id": "GO:0040037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0040037", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "response to unfolded protein", "id": "GO:0006986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006986", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "negative regulation of sprouting angiogenesis", "id": "GO:1903671", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903671", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "SMAD binding", "id": "GO:0046332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046332", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" }, { "name": "cAMP response element binding", "id": "GO:0035497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035497", "evidence": [ { "database": "UniProtKB", "id": "F1SI98", "url": "https://www.uniprot.org/uniprotkb/F1SI98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 493, "end_pos": 495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 514, "end_pos": 516, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SI98-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 520, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SI98-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SI98" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SI98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SI98" }, { "id": "PS50217", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50217" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BZIP", "eco_id": "ECO_0000259", "start_pos": 290, "end_pos": 353, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 79, 207 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 26, "end_pos": 28 }, { "start_pos": 343, "end_pos": 345 }, { "start_pos": 493, "end_pos": 495 }, { "start_pos": 514, "end_pos": 516 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIA2-1", "uniprot_ac": "F1SIA2", "uniprot_id": "F1SIA2_PIG", "mass": { "chemical_mass": 39159.0, "monoisotopic_mass": 39159.0 }, "refseq": { "ac": "XP_003122875", "name": "putative nuclease HARBI1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122875" }, "gene_names": [ { "name": "HARBI1", "type": "recommended", "evidence": [ { "id": "F1SIA2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" } ] }, { "name": "HARBI1", "type": "synonym", "evidence": [ { "id": "XP_003122875", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122875" } ] } ], "protein_names": [ { "name": "Putative nuclease HARBI1", "type": "recommended", "evidence": [ { "id": "F1SIA2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIA2/entry#names_and_taxonomy" } ] }, { "name": "Harbinger transposase-derived nuclease", "type": "synonym", "evidence": [ { "id": "F1SIA2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIA2/entry#names_and_taxonomy" } ] }, { "name": "putative nuclease HARBI1", "type": "synonym", "evidence": [ { "id": "XP_003122875", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122875" } ] } ], "function": [ { "annotation": "Transposase-derived protein that may have nuclease activity. Does not have transposase activity.", "evidence": [ { "database": "UniProtKB", "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2#function" }, { "database": "UniProtKB", "id": "ARBA00045850", "url": "https://www.uniprot.org/uniprotkb/ARBA00045850#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HARBI1", "url": "https://www.uniprot.org/uniprotkb/F1SIA2", "locus": { "chromosome": "2", "start_pos": 15927157, "end_pos": 15916494, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013258", "url": "https://www.ensembl.org/id/ENSSSCG00000013258" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013258", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013258", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516314", "url": "https://www.ncbi.nlm.nih.gov/gene/100516314", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516314", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516314", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AEPNCKV", "url": "https://omabrowser.org/oma/group/AEPNCKV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIA2", "url": "https://www.orthodb.org/?gene=F1SIA2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22930", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22930", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22930:SF253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22930:SF253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13359", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13359", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122875", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122875", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIA2-1", "url": "https://www.uniprot.org/uniprotkb/F1SIA2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIPITVLDCDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGSSLSRPTQRSRAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVTNVTEALVERASQFIRFPADEASVQALKDEFYGLAGMPGVIGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRSWLMTPLHIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKCSHIILACCVLHNISLEHGMDVWSSPVTGPMEQPPEEEYEHMESLDLEADRIRQELMLTHFS", "length": 349, "header": "tr|F1SIA2-1|F1SIA2_PIG Isoform 1 of Putative nuclease HARBI1 OS=Sus scrofa OX=9823 GN=HARBI1 PE=3 SV=1 CANONICAL=F1SIA2-1" }, "isoforms": [ { "isoform_ac": "F1SIA2-1", "url": "https://www.uniprot.org/uniprotkb/F1SIA2/entry#F1SIA2-1", "sequence": { "sequence": "MAIPITVLDCDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGSSLSRPTQRSRAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVTNVTEALVERASQFIRFPADEASVQALKDEFYGLAGMPGVIGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRSWLMTPLHIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKCSHIILACCVLHNISLEHGMDVWSSPVTGPMEQPPEEEYEHMESLDLEADRIRQELMLTHFS", "length": 349, "header": "tr|F1SIA2-1|F1SIA2_PIG Isoform 1 of Putative nuclease HARBI1 OS=Sus scrofa OX=9823 GN=HARBI1 PE=3 SV=1 CANONICAL=F1SIA2-1" }, "locus": { "chromosome": "2", "start_pos": 15926628, "end_pos": 15917372, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014482.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014482.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014090.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014090.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516314", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516314", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3GYI9-1", "protein_name": "Putative nuclease HARBI1", "gene_name": "Harbi1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVPITVLDCDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGASLSRPTQRSRAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVAHVTEALVERASQFIHFPADEAAVQSLKDEFYGLAGMPGVIGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLIVCDIRGALMTVETSWPGSLQDCAVLQQSSLSSQFETGMHKDSWLLGDSSFFLRTWLMTPLHIAETPAEYRYNRAHSATHSVIEKTLRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHGMDVWSSPGTGPIEQPPEGEYEQMESLDLEADRIRQELMLTHFS", "length": 349 }, "evidence": [ { "id": "F1SIA2", "url": "https://omabrowser.org/oma/group/F1SIA2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q17QR8-1", "protein_name": "Putative nuclease HARBI1", "gene_name": "HARBI1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAIPITVLDCDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGASLSRPTQRSRAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPADEASVQALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRTWLMTPLHIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHGMDVWSSPVTGPVEQPPEEEYEHMESLDLEADRIRQELMLTHFS", "length": 349 }, "evidence": [ { "id": "F1SIA2", "url": "https://omabrowser.org/oma/group/F1SIA2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AZB8-1", "protein_name": "Putative nuclease HARBI1", "gene_name": "harbi1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MALSIAILDCDLLLHGRGHKTLDRFDIETVSDDFLLNTFGFPREFIYYLVELLKDSLLRRTQRSRAISPDVQILAALGFYTSGSFQSKMGDAIGISQASMSRCVSNVTKALIEKAPEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCAHIAIKAPNADDSSYVNKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVAKLFEEQENDDEGWLLGDNRYPLKKWLMTPVQSPESPADYRYNLAHTTTHEIVDRTFRAIQTRFRCLDGAKGYLQYSPEKCSHIIQACCVLHNISLQSGLDAWTFERTEATDQSGEDIDPSDTDDPEALRVRQELIQNHFS", "length": 349 }, "evidence": [ { "id": "F1SIA2", "url": "https://omabrowser.org/oma/group/F1SIA2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BR93-1", "protein_name": "Putative nuclease HARBI1", "gene_name": "Harbi1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIPITVLDCDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYFLVELLGASLSRPTQRSRAISPETQILAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIHFPVDEAAVQSLKDEFYGLAGMPGVIGVADCIHVAIKAPNAEDLSYVNRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLTSQFETGMPKDSWLLGDSSFFLRSWLLTPLPIPETAAEYRYNRAHSATHSVIERTLQTLCCRFRCLDGSKGALQYSPEKCSHIILACCVLHNISLDHGMDVWSSPVPGPIDQPPEGEDEHMESLDLEADRIRQELILTHFS", "length": 349 }, "evidence": [ { "id": "F1SIA2", "url": "https://omabrowser.org/oma/group/F1SIA2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96MB7-1", "protein_name": "Putative nuclease HARBI1", "gene_name": "HARBI1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAIPITVLDCDLLLYGRGHRTLDRFKLDDVTDEYLMSMYGFPRQFIYYLVELLGANLSRPTQRSRAISPETQVLAALGFYTSGSFQTRMGDAIGISQASMSRCVANVTEALVERASQFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYVNRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSFFLRTWLMTPLHIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQYSPEKSSHIILACCVLHNISLEHGMDVWSSPMTGPMEQPPEEEYEHMESLDLEADRIRQELMLTHFS", "length": 349 }, "evidence": [ { "id": "F1SIA2", "url": "https://omabrowser.org/oma/group/F1SIA2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" } ], "pmid": "" }, { "name": "nuclease activity", "id": "GO:0004518", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004518", "evidence": [ { "database": "UniProtKB", "id": "F1SIA2", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIA2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIA2" }, { "id": "PF13359", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13359" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DDE Tnp4", "eco_id": "ECO_0000259", "start_pos": 148, "end_pos": 300, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 300, "end_pos": 302 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIC7-1", "uniprot_ac": "F1SIC7", "uniprot_id": "F1SIC7_PIG", "mass": { "chemical_mass": 31891.0, "monoisotopic_mass": 31891.0 }, "refseq": {}, "gene_names": [ { "name": "INSYN1", "type": "recommended", "evidence": [ { "id": "F1SIC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIC7" } ] } ], "protein_names": [ { "name": "Inhibitory synaptic factor 1", "type": "recommended", "evidence": [ { "id": "F1SIC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIC7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIC7", "url": "https://www.uniprot.org/uniprotkb/F1SIC7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "INSYN1", "url": "https://www.uniprot.org/uniprotkb/F1SIC7", "locus": { "chromosome": "7", "start_pos": 59677104, "end_pos": 59665735, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001916", "url": "https://www.ensembl.org/id/ENSSSCG00000001916" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001916", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001916", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156505", "url": "https://www.ncbi.nlm.nih.gov/gene/100156505", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027997", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027997", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156505", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156505", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HSLLYNC", "url": "https://omabrowser.org/oma/group/HSLLYNC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIC7", "url": "https://www.orthodb.org/?gene=F1SIC7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15917", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15917", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15917:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15917:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15252", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15252", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SIC7", "url": "https://www.uniprot.org/uniprotkb/F1SIC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIC7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNIRGTPDLGQPSDDPSSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKAGAGGPFDLGHLDFMTADILSDSWEFCSFLDVSTPSDSVDGPESVRPGTGTDYRLMNGGMPIPNGPRVETPDSSSEEAFAAGPVKGQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEEETAAAAEEEVGLSPEPPHAEAHAGPVKPSPAPYKPRRSPLTGRRSGPTTAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATRQKATGKN", "length": 295, "header": "tr|F1SIC7-1|F1SIC7_PIG Isoform 1 of Inhibitory synaptic factor 1 OS=Sus scrofa OX=9823 GN=INSYN1 PE=3 SV=1 CANONICAL=F1SIC7-1" }, "isoforms": [ { "isoform_ac": "F1SIC7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIC7/entry#F1SIC7-1", "sequence": { "sequence": "MNIRGTPDLGQPSDDPSSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKAGAGGPFDLGHLDFMTADILSDSWEFCSFLDVSTPSDSVDGPESVRPGTGTDYRLMNGGMPIPNGPRVETPDSSSEEAFAAGPVKGQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEEETAAAAEEEVGLSPEPPHAEAHAGPVKPSPAPYKPRRSPLTGRRSGPTTAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATRQKATGKN", "length": 295, "header": "tr|F1SIC7-1|F1SIC7_PIG Isoform 1 of Inhibitory synaptic factor 1 OS=Sus scrofa OX=9823 GN=INSYN1 PE=3 SV=1 CANONICAL=F1SIC7-1" }, "locus": { "chromosome": "7", "start_pos": 59677043, "end_pos": 59665934, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002145.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002145.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002095.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002095.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 255, "start_aa": "Thr", "end_pos": 255, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr255", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIC7", "url": "https://www.uniprot.org/uniprotkb/F1SIC7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156505", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156505", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZVN3-1", "protein_name": "Inhibitory synaptic factor 1", "gene_name": "INSYN1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDSRSCQDRQPSDPPSSSSSNCSSGKSEGERERIRSRMKMVIGQLEGILQELKEVAKELREVVSQIDRLTSDFEFELEPDDWTTATASSTSSSEKGGVSFELGPLDFTAADILSDSWEFCSFLDTSTPSDQGDGPDPPRPQPPPCRQPDYRLMNGGVPIANGPRGGTPDSSSEEAFVPQQKGPHHRTAGTRERVRFSDKVLYHALCCDDDGDGADEASPNEDSTEERGLKVTPKNQPPVGGNGGGTAGGPPARRLMRNSSTQTVADKSTQTVLPYIPAKQKLKTKN", "length": 286 }, "evidence": [ { "id": "F1SIC7", "url": "https://omabrowser.org/oma/group/F1SIC7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B0BN13-1", "protein_name": "Inhibitory synaptic factor 1", "gene_name": "Insyn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNIRGAPDLGQPSDDPNSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKAGAGGPFDLGHLDFMTADILSDSWEFCSFLDVSTPSDSVDGPEAPRPGTGPDYQLMNGGLPIPNGPRVETPDSSSEEAFSAGPAKGQVPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEEVEEEEAGLAPELPRVEPHTGPLKPSPAPYKTKRSPLTTRRLGPTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATKQKAKGKN", "length": 291 }, "evidence": [ { "id": "F1SIC7", "url": "https://omabrowser.org/oma/group/F1SIC7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HEI7-1", "protein_name": "Inhibitory synaptic factor 1", "gene_name": "Insyn1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNIRGAPDLGQPSDDPNSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKAGVGGPFDLGHLDFMTADILSDSWEFCSFLDVSTPSDSVDGPEAPRPGTGPDYQLMNGGMPIPNGPRVETPDSSSEEAFSAGPAKGQVPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEEEGEEEAGLAPELPHVEPHTGPLKPSPAPYKTRRSPLTTRRLGPTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTSTKQKAKGKN", "length": 291 }, "evidence": [ { "id": "F1SIC7", "url": "https://omabrowser.org/oma/group/F1SIC7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q1L899-1", "protein_name": "Inhibitory synaptic factor 1", "gene_name": "insy1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSQSRAPAREPSETPSQREQIRSHMKMVIQQLEGILKELKDVAHELREVVGQIDKLTSDLELDLDADDWTVATASSTSSSERGLCEAFRLDFLGQDSLSDSWDFCSFLESSSRRSARDDTKPPPTTASVYSQMNGGLPVPNGPLIITPDSSSEEASSSTHSQSQKTSRTAGTRERVRFSDKILYHALCCDDDEDEDEDEDGRDEEEDKLDTDSERSPLAGSPVPPLPELYNCREPPAGGSHTIPRKDALNPGCRKKLLRNSSTQTVSDKSTQTLLPYVPAKHRNKDL", "length": 287 }, "evidence": [ { "id": "F1SIC7", "url": "https://omabrowser.org/oma/group/F1SIC7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2T9L4-1", "protein_name": "Inhibitory synaptic factor 1", "gene_name": "INSYN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNIRGAPDLGQPSDDPSSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKAGMGGPFDLGHLDFMTADILSDSWEFCSFLDVSTPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATRQKARGKN", "length": 293 }, "evidence": [ { "id": "F1SIC7", "url": "https://omabrowser.org/oma/group/F1SIC7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CD60-1", "protein_name": "Inhibitory synaptic factor 1", "gene_name": "Insyn1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNIRGAPDLGQPSDDPNSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKAGVGGPFDLGHLDFMTADILSDSWEFCSFLDVSTPSDSVDGPEAPRPGTGPDYQLMNGGLPIPNGPRVETPDSSSEEAFSAGPAKGQVPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEEGEEEEEGDLAPELPRVEPHTGPLKPSPAPYKTKRSPLTTRRLGPTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATKQKAKGKN", "length": 292 }, "evidence": [ { "id": "F1SIC7", "url": "https://omabrowser.org/oma/group/F1SIC7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "GABA-ergic synapse", "id": "GO:0098982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098982", "evidence": [ { "database": "UniProtKB", "id": "F1SIC7", "url": "https://www.uniprot.org/uniprotkb/F1SIC7" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "F1SIC7", "url": "https://www.uniprot.org/uniprotkb/F1SIC7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "inhibitory postsynaptic potential", "id": "GO:0060080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060080", "evidence": [ { "database": "UniProtKB", "id": "F1SIC7", "url": "https://www.uniprot.org/uniprotkb/F1SIC7" } ], "pmid": "" }, { "name": "postsynaptic specialization organization", "id": "GO:0099084", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099084", "evidence": [ { "database": "UniProtKB", "id": "F1SIC7", "url": "https://www.uniprot.org/uniprotkb/F1SIC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 255 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 267, "end_pos": 269 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIC9-1", "uniprot_ac": "F1SIC9", "uniprot_id": "F1SIC9_PIG", "mass": { "chemical_mass": 64769.0, "monoisotopic_mass": 64769.0 }, "refseq": { "ac": "XP_005666227", "name": "lysyl oxidase homolog 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666227" }, "gene_names": [ { "name": "LOXL1", "type": "recommended", "evidence": [ { "id": "F1SIC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIC9" } ] }, { "name": "LOXL1", "type": "synonym", "evidence": [ { "id": "XP_005666227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666227" } ] } ], "protein_names": [ { "name": "protein-lysine 6-oxidase", "type": "recommended", "evidence": [ { "id": "F1SIC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIC9/entry#names_and_taxonomy" } ] }, { "name": "1.4.3.13", "type": "synonym", "evidence": [ { "id": "F1SIC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIC9/entry#names_and_taxonomy" } ] }, { "name": "lysyl oxidase homolog 1", "type": "synonym", "evidence": [ { "id": "XP_005666227", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666227" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIC9", "url": "https://www.uniprot.org/uniprotkb/F1SIC9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOXL1", "url": "https://www.uniprot.org/uniprotkb/F1SIC9", "locus": { "chromosome": "7", "start_pos": 59481412, "end_pos": 59505149, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001914", "url": "https://www.ensembl.org/id/ENSSSCG00000001914" } ] } } ], "crossref": [ { "id": "F1SIC9", "url": "https://alphafold.ebi.ac.uk/entry/F1SIC9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001914", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001914", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154899", "url": "https://www.ncbi.nlm.nih.gov/gene/100154899", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001695", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001695", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154899", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154899", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SIC9", "url": "https://www.orthodb.org/?gene=F1SIC9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45817", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45817", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45817:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45817:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01186", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01186", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1566948", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1566948", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2243919", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2243919", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005666227", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005666227", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "24544", "url": "https://www.rhea-db.org/rhea/24544", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SIC9", "url": "https://www.uniprot.org/uniprotkb/F1SIC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALAPAGWQLGALVWGACLCVLVHGQQAQPGQGSDPGRWRQLIQWENNGQVYSLLNSGSEYVPAGPQRSEGNSRVLLAGAPQAPQRRSQGGLRRRQAPSLPLPGRVGSDTVRGQARHPFGFGQVPDNWREVAVGDSTGMARVRTSVSQQRHGGSASSVSASAFATTYRQPPSFPQQFPYPQAPFVSQYETYDPASRTYDQGYVYYRGPGGGLGAGAAAVASAGVVYPFQPQPRARYEEYGGGGEEQPEYPPQGFYPALERPPAPQPPPQPADGLDRRYSHSLYHEGTAGLEQAYPDSGPDAAQPNGGTYGGDPRFGWYPPYGNMPPEAYSPPRAVEPQPPFRVLEPPYLPVRSSDAPPPGSERSGAQQGRLSVGSVYRPNQNGRGLPDLVPDPNYVQASTYVQRAHLYSLRCAAEEKCLASTAYAPEATDYDVRVLLRFPQRVKNQGTADFLPNRPRHTWEWHSCHQHYHSMDEFSHYDLLDAATGKKVAEGHKASFCLEDSTCDFGNLKRYACTSHTQGLSPGCYDTYNADIDCQWIDITDVQPGNYILKVHVNPKYIVLESDFTNNVVRCNIHYTGRYVSATNCKIVQS", "length": 591, "header": "tr|F1SIC9-1|F1SIC9_PIG Isoform 1 of protein-lysine 6-oxidase OS=Sus scrofa OX=9823 GN=LOXL1 PE=3 SV=1 CANONICAL=F1SIC9-1" }, "isoforms": [ { "isoform_ac": "F1SIC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIC9/entry#F1SIC9-1", "sequence": { "sequence": "MALAPAGWQLGALVWGACLCVLVHGQQAQPGQGSDPGRWRQLIQWENNGQVYSLLNSGSEYVPAGPQRSEGNSRVLLAGAPQAPQRRSQGGLRRRQAPSLPLPGRVGSDTVRGQARHPFGFGQVPDNWREVAVGDSTGMARVRTSVSQQRHGGSASSVSASAFATTYRQPPSFPQQFPYPQAPFVSQYETYDPASRTYDQGYVYYRGPGGGLGAGAAAVASAGVVYPFQPQPRARYEEYGGGGEEQPEYPPQGFYPALERPPAPQPPPQPADGLDRRYSHSLYHEGTAGLEQAYPDSGPDAAQPNGGTYGGDPRFGWYPPYGNMPPEAYSPPRAVEPQPPFRVLEPPYLPVRSSDAPPPGSERSGAQQGRLSVGSVYRPNQNGRGLPDLVPDPNYVQASTYVQRAHLYSLRCAAEEKCLASTAYAPEATDYDVRVLLRFPQRVKNQGTADFLPNRPRHTWEWHSCHQHYHSMDEFSHYDLLDAATGKKVAEGHKASFCLEDSTCDFGNLKRYACTSHTQGLSPGCYDTYNADIDCQWIDITDVQPGNYILKVHVNPKYIVLESDFTNNVVRCNIHYTGRYVSATNCKIVQS", "length": 591, "header": "tr|F1SIC9-1|F1SIC9_PIG Isoform 1 of protein-lysine 6-oxidase OS=Sus scrofa OX=9823 GN=LOXL1 PE=3 SV=1 CANONICAL=F1SIC9-1" }, "locus": { "chromosome": "7", "start_pos": 59504819, "end_pos": 59481746, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002143.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002143.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002093.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002093.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIC9", "url": "https://www.uniprot.org/uniprotkb/F1SIC9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154899", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154899", "resource": "KEGG Pathway" }, { "id": "R-SSC-1566948", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1566948", "resource": "Reactome", "description": "Elastic fibre formation" }, { "id": "R-SSC-2243919", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2243919", "resource": "Reactome", "description": "Crosslinking of collagen fibrils" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SIC9", "url": "https://www.uniprot.org/uniprotkb/F1SIC9" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SIC9", "url": "https://www.uniprot.org/uniprotkb/F1SIC9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "collagen fibril organization", "id": "GO:0030199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030199", "evidence": [ { "database": "UniProtKB", "id": "F1SIC9", "url": "https://www.uniprot.org/uniprotkb/F1SIC9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "copper ion binding", "id": "GO:0005507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005507", "evidence": [ { "database": "UniProtKB", "id": "F1SIC9", "url": "https://www.uniprot.org/uniprotkb/F1SIC9" } ], "pmid": "" }, { "name": "protein-lysine 6-oxidase activity", "id": "GO:0004720", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004720", "evidence": [ { "database": "UniProtKB", "id": "F1SIC9", "url": "https://www.uniprot.org/uniprotkb/F1SIC9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "24544", "name": "", "equation": "L-lysyl-[protein] + O2 + H2O = (S)-2-amino-6-oxohexanoyl-[protein] + H2O2 + NH4(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "24544", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/24544" } ] }, { "id": "R-SSC-2022141", "name": "Prolysyl oxidase activation", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2022141", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022141" } ] }, { "id": "R-SSC-2129375", "name": "Elastin cross-linking by lysyl oxidase", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2129375", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2129375" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIC9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 591, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIC9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIC9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIH6-1", "uniprot_ac": "F1SIH6", "uniprot_id": "F1SIH6_PIG", "mass": { "chemical_mass": 56406.0, "monoisotopic_mass": 56406.0 }, "refseq": {}, "gene_names": [ { "name": "ATOSB", "type": "recommended", "evidence": [ { "id": "F1SIH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIH6" } ] } ], "protein_names": [ { "name": "Atos homolog protein B", "type": "recommended", "evidence": [ { "id": "F1SIH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIH6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIH6", "url": "https://www.uniprot.org/uniprotkb/F1SIH6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATOSB", "url": "https://www.uniprot.org/uniprotkb/F1SIH6", "locus": { "chromosome": "1", "start_pos": 235895621, "end_pos": 235907113, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005301", "url": "https://www.ensembl.org/id/ENSSSCG00000005301" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005301", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005301", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624931", "url": "https://www.ncbi.nlm.nih.gov/gene/100624931", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025261", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025261", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033473", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033473", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051506", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051506", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100624931", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624931", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SIH6", "url": "https://www.orthodb.org/?gene=F1SIH6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13199", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13199", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13199:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13199:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13889", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13889", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13915", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13915", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SIH6", "url": "https://www.uniprot.org/uniprotkb/F1SIH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIH6-1", "url": "https://www.uniprot.org/uniprotkb/F1SIH6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRHVQAELSSSSEPEPGPSQPAVRQGALQGGLLMGYSPAGGATSSGVYQVSIFSPPAGASEPHRALKRPAPPTEGPRELKRGPGLGAREGLPPEELSTVGLLGPEGLGVASQHFCHHGLHVVEQGGSSTSPWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQTGGKSLVVGVGNRSSPWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEVLDVSSEDEGPAPRRRRGTLGHPPAANSSDAKATPFWSHLLPGPKEPVLDPTDCSPVGRRLKGARRLKLNSLRSLRKGPGLLSPHSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGVVDLNPLGRKGYSVPKVGTIQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNASPTCRLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP", "length": 534, "header": "tr|F1SIH6-1|F1SIH6_PIG Isoform 1 of Atos homolog protein B OS=Sus scrofa OX=9823 GN=ATOSB PE=3 SV=1 CANONICAL=F1SIH6-1" }, "isoforms": [ { "isoform_ac": "F1SIH6-1", "url": "https://www.uniprot.org/uniprotkb/F1SIH6/entry#F1SIH6-1", "sequence": { "sequence": "MRHVQAELSSSSEPEPGPSQPAVRQGALQGGLLMGYSPAGGATSSGVYQVSIFSPPAGASEPHRALKRPAPPTEGPRELKRGPGLGAREGLPPEELSTVGLLGPEGLGVASQHFCHHGLHVVEQGGSSTSPWTSGAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQTGGKSLVVGVGNRSSPWPRESPGTANGHSPEHTPPGPGPPGPCPTKRRLLPAGEVLDVSSEDEGPAPRRRRGTLGHPPAANSSDAKATPFWSHLLPGPKEPVLDPTDCSPVGRRLKGARRLKLNSLRSLRKGPGLLSPHSASPVPTPAVSRTLLGNFEESLLRGRFAPSGHIEGFTAEIGASGSYCPQHVTLPVTVTFFDVSEQNAPAPFLGVVDLNPLGRKGYSVPKVGTIQVTLFNPNQTVVKMFLVTFDFSDMPAAHMTFLRHRLFLVPVGEEGNASPTCRLLCYLLHLRFRSSRSGRLSLHGDIRLLFSRRSLELDTGLPYELQAVTEAPHNPRYSPLP", "length": 534, "header": "tr|F1SIH6-1|F1SIH6_PIG Isoform 1 of Atos homolog protein B OS=Sus scrofa OX=9823 GN=ATOSB PE=3 SV=1 CANONICAL=F1SIH6-1" }, "locus": { "chromosome": "1", "start_pos": 235899192, "end_pos": 235896712, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005839.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005839.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005694.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005694.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 337, "start_aa": "Thr", "end_pos": 337, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr337", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIH6", "url": "https://www.uniprot.org/uniprotkb/F1SIH6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100624931", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100624931", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIH6", "url": "https://www.uniprot.org/uniprotkb/F1SIH6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIH6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIH6" }, { "id": "SM01177", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01177" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Atos-like conserved", "eco_id": "ECO_0000259", "start_pos": 344, "end_pos": 402, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 337 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 145, "end_pos": 147 }, { "start_pos": 203, "end_pos": 205 }, { "start_pos": 272, "end_pos": 274 }, { "start_pos": 431, "end_pos": 433 }, { "start_pos": 469, "end_pos": 471 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SII8-1", "uniprot_ac": "F1SII8", "uniprot_id": "F1SII8_PIG", "mass": { "chemical_mass": 84169.0, "monoisotopic_mass": 84169.0 }, "refseq": {}, "gene_names": [ { "name": "MINDY4", "type": "recommended", "evidence": [ { "id": "F1SII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SII8" } ] } ], "protein_names": [ { "name": "Ubiquitin carboxyl-terminal hydrolase MINDY", "type": "recommended", "evidence": [ { "id": "F1SII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SII8/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "F1SII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SII8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Hydrolase that can remove 'Lys-48'-linked conjugated ubiquitin from proteins.", "evidence": [ { "database": "UniProtKB", "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8#function" }, { "database": "UniProtKB", "id": "RU367088", "url": "https://www.uniprot.org/uniprotkb/RU367088#function" } ] }, { "annotation": "Probable hydrolase that can remove 'Lys-48'-linked conjugated ubiquitin from proteins.", "evidence": [ { "database": "UniProtKB", "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8#function" }, { "database": "UniProtKB", "id": "ARBA00037630", "url": "https://www.uniprot.org/uniprotkb/ARBA00037630#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MINDY4", "url": "https://www.uniprot.org/uniprotkb/F1SII8", "locus": { "chromosome": "18", "start_pos": 42096353, "end_pos": 42200694, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016674", "url": "https://www.ensembl.org/id/ENSSSCG00000016674" } ] } } ], "crossref": [ { "id": "F1SII8", "url": "https://alphafold.ebi.ac.uk/entry/F1SII8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016674", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016674", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR025257", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025257", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039785", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039785", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059022", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059022", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12473", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12473", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12473:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12473:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13898", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13898", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SII8-1", "url": "https://www.uniprot.org/uniprotkb/F1SII8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSLFVEEVAASLVREFLSRKGLKKTCVTMDQERPRSDLSINSRNVLRKVLHLEFLYRENKAKENPLKTNLELITRYFLDHFENTANNFTQETPIPALSVSKKNNKLPLRCSETTLVNIYDLADEDASWRTSLSEGSKARHNNLDGDVLGNFVSSRRPSHQSKPVQTVPGERPPLTPAWEKTDKFQSSEPVLDTKRMGEKIRSKSGLIFRGMMAGPIASSPQDSLRKRSLRRSSASSSSTQPPEEESPPVPDTPACPPQEGLASSTGCIPRNPLGPLSEVPSEEQRTSPSSPPHLPGKGLPQRGSDRWKDLSEDSTAMDSGPEADRTALTFSLSGGNTLTMQERLERAFKRRQGSQLSPLRKNQLPVSNKVDEELAVLQIEDVEDELVKEEVILSPVPSMLKLQVASKPIDLSVAKDIKTLLFGSSLCCFNEEWKLQSFAFNDAASLKYGIVQNKGGPCGVLAAVQGCVLQKLLFEGDSGASCARQLQPSDAHRTHCLALAIADIVWRAGGHERAVVTLASGTQQFSPAGKYKADGILETLILHSLTCYEELVTFLQQSIHQFEAGPYGCVLLTLSAILSRSTELVRQDFDVPTSHLIGSHGYCTQELVNLLLTGKAVSNVFNDVVELDSGDGNITLLKGIATRSDIGFLSLFEHYNVCQVGCFLKTPRFPIWVVCSESHFSVLFSLQLELLRDWRTERLFDLYYYDGLANQQEQIRLTIDTTQTVPEDKDNDLVPPLELCIRTKWKGASVNWNGSDPIL", "length": 760, "header": "tr|F1SII8-1|F1SII8_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase MINDY OS=Sus scrofa OX=9823 GN=MINDY4 PE=3 SV=4 CANONICAL=F1SII8-1" }, "isoforms": [ { "isoform_ac": "F1SII8-1", "url": "https://www.uniprot.org/uniprotkb/F1SII8/entry#F1SII8-1", "sequence": { "sequence": "MDSLFVEEVAASLVREFLSRKGLKKTCVTMDQERPRSDLSINSRNVLRKVLHLEFLYRENKAKENPLKTNLELITRYFLDHFENTANNFTQETPIPALSVSKKNNKLPLRCSETTLVNIYDLADEDASWRTSLSEGSKARHNNLDGDVLGNFVSSRRPSHQSKPVQTVPGERPPLTPAWEKTDKFQSSEPVLDTKRMGEKIRSKSGLIFRGMMAGPIASSPQDSLRKRSLRRSSASSSSTQPPEEESPPVPDTPACPPQEGLASSTGCIPRNPLGPLSEVPSEEQRTSPSSPPHLPGKGLPQRGSDRWKDLSEDSTAMDSGPEADRTALTFSLSGGNTLTMQERLERAFKRRQGSQLSPLRKNQLPVSNKVDEELAVLQIEDVEDELVKEEVILSPVPSMLKLQVASKPIDLSVAKDIKTLLFGSSLCCFNEEWKLQSFAFNDAASLKYGIVQNKGGPCGVLAAVQGCVLQKLLFEGDSGASCARQLQPSDAHRTHCLALAIADIVWRAGGHERAVVTLASGTQQFSPAGKYKADGILETLILHSLTCYEELVTFLQQSIHQFEAGPYGCVLLTLSAILSRSTELVRQDFDVPTSHLIGSHGYCTQELVNLLLTGKAVSNVFNDVVELDSGDGNITLLKGIATRSDIGFLSLFEHYNVCQVGCFLKTPRFPIWVVCSESHFSVLFSLQLELLRDWRTERLFDLYYYDGLANQQEQIRLTIDTTQTVPEDKDNDLVPPLELCIRTKWKGASVNWNGSDPIL", "length": 760, "header": "tr|F1SII8-1|F1SII8_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase MINDY OS=Sus scrofa OX=9823 GN=MINDY4 PE=3 SV=4 CANONICAL=F1SII8-1" }, "locus": { "chromosome": "18", "start_pos": 42200495, "end_pos": 42096744, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018153.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018153.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017662.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017662.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8" } ], "pmid": "" }, { "name": "protein K48-linked deubiquitination", "id": "GO:0071108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071108", "evidence": [ { "database": "UniProtKB", "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8" } ], "pmid": "" }, { "name": "K48-linked deubiquitinase activity", "id": "GO:1990380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990380", "evidence": [ { "database": "UniProtKB", "id": "F1SII8", "url": "https://www.uniprot.org/uniprotkb/F1SII8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 634, "end_pos": 636, "annotation": "n_glycosylation_sequon" }, { "start_pos": 754, "end_pos": 756, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SII8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 760, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SII8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SII8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SII8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SII8" }, { "id": "SM01174", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01174" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Deubiquitinating enzyme MINDY-3/4 conserved", "eco_id": "ECO_0000259", "start_pos": 419, "end_pos": 755, "start_aa": "Lys", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 634, "end_pos": 636 }, { "start_pos": 754, "end_pos": 756 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIK7-1", "uniprot_ac": "F1SIK7", "uniprot_id": "F1SIK7_PIG", "mass": { "chemical_mass": 89571.0, "monoisotopic_mass": 89571.0 }, "refseq": {}, "gene_names": [ { "name": "DPY19L2", "type": "recommended", "evidence": [ { "id": "F1SIK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIK7" } ] } ], "protein_names": [ { "name": "Dpy-19 like 2", "type": "synonym", "evidence": [ { "id": "F1SIK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIK7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIK7", "url": "https://www.uniprot.org/uniprotkb/F1SIK7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DPY19L2", "url": "https://www.uniprot.org/uniprotkb/F1SIK7", "locus": { "chromosome": "18", "start_pos": 38765941, "end_pos": 38694257, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016663", "url": "https://www.ensembl.org/id/ENSSSCG00000016663" } ] } } ], "crossref": [ { "id": "F1SIK7", "url": "https://alphafold.ebi.ac.uk/entry/F1SIK7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016663", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016663", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20179", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20179", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR018732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31488", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31488", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31488:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31488:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10034", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10034", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SIK7", "url": "https://www.uniprot.org/uniprotkb/F1SIK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIK7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRKWSGKRGISSKKLHSPRSTQSRRRRRATGAGEPEFEEEPKEEMKEPELLLSAGRGILPGGARGYSPRRTRNLNARNAQNCMKLEMVTKTVLLGRFQFLSAFVEQLRDKVHLLQRRPFTGRITFGIAAFVSFLHWIHLITLFENDRHFSHLSSLEREMTFRTEMGLYYSYFKTIIEAPSFLEGLWMIMNDRLTEYPLVINTVKRFHLYPEVIIAFWYRSVVGIMNSFGLETKTCWNVTRVEPLNEVQSCEGLGDPACFYVGVIFVLNGMMMGLFFVYGAYLSGTQLGGLITVLCYFFNHGEATRVMWTPPLRESFSYPFLVLQMYILTLILRTSNNSKKHFVALCLSNVAFMLPWQFAQFILFTQIASLFPMYVVGYIEPTKFQKIIYMNMISVLLCFVLMFGNPMYLSSYYSSSLLMTLVIILKRNKIQRFGVSELHFWLIQGCAWFCGTIILKFLTSKILGVSDHIRLSDLIAARILRYTDFDTLIYTCAPEFDFMEKATPLRYTKTLLLPVVMVITYFIFKKAFRDILCVLSANTYLRKQLLEHGELIFHTLQLFAFTSLAILIMRLKLFLTPHMCIMASLICSRRLFGWLFCRLRFENVVFGILTVMSIQGCANLHNQWSIIGEFNNLPQEELIQWVRYNTRPDAVFAGAMPTMASVKLSTLHPIVNHPHYEDADLRARTKTVYSAYSRKSAKEVRDKLLELHVNYYILEEAWCVVRTKPGCSMLEIWDVEDPSNSANPPLCSVLLKDARPYFTTVFQNSMYRVLKVN", "length": 773, "header": "tr|F1SIK7-1|F1SIK7_PIG Isoform 1 of Dpy-19 like 2 OS=Sus scrofa OX=9823 GN=DPY19L2 PE=3 SV=3 CANONICAL=F1SIK7-1" }, "isoforms": [ { "isoform_ac": "F1SIK7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIK7/entry#F1SIK7-1", "sequence": { "sequence": "MRKWSGKRGISSKKLHSPRSTQSRRRRRATGAGEPEFEEEPKEEMKEPELLLSAGRGILPGGARGYSPRRTRNLNARNAQNCMKLEMVTKTVLLGRFQFLSAFVEQLRDKVHLLQRRPFTGRITFGIAAFVSFLHWIHLITLFENDRHFSHLSSLEREMTFRTEMGLYYSYFKTIIEAPSFLEGLWMIMNDRLTEYPLVINTVKRFHLYPEVIIAFWYRSVVGIMNSFGLETKTCWNVTRVEPLNEVQSCEGLGDPACFYVGVIFVLNGMMMGLFFVYGAYLSGTQLGGLITVLCYFFNHGEATRVMWTPPLRESFSYPFLVLQMYILTLILRTSNNSKKHFVALCLSNVAFMLPWQFAQFILFTQIASLFPMYVVGYIEPTKFQKIIYMNMISVLLCFVLMFGNPMYLSSYYSSSLLMTLVIILKRNKIQRFGVSELHFWLIQGCAWFCGTIILKFLTSKILGVSDHIRLSDLIAARILRYTDFDTLIYTCAPEFDFMEKATPLRYTKTLLLPVVMVITYFIFKKAFRDILCVLSANTYLRKQLLEHGELIFHTLQLFAFTSLAILIMRLKLFLTPHMCIMASLICSRRLFGWLFCRLRFENVVFGILTVMSIQGCANLHNQWSIIGEFNNLPQEELIQWVRYNTRPDAVFAGAMPTMASVKLSTLHPIVNHPHYEDADLRARTKTVYSAYSRKSAKEVRDKLLELHVNYYILEEAWCVVRTKPGCSMLEIWDVEDPSNSANPPLCSVLLKDARPYFTTVFQNSMYRVLKVN", "length": 773, "header": "tr|F1SIK7-1|F1SIK7_PIG Isoform 1 of Dpy-19 like 2 OS=Sus scrofa OX=9823 GN=DPY19L2 PE=3 SV=3 CANONICAL=F1SIK7-1" }, "locus": { "chromosome": "18", "start_pos": 38764021, "end_pos": 38694257, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018142.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018142.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017652.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017652.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIK7", "url": "https://www.uniprot.org/uniprotkb/F1SIK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatid development", "id": "GO:0007286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007286", "evidence": [ { "database": "UniProtKB", "id": "F1SIK7", "url": "https://www.uniprot.org/uniprotkb/F1SIK7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mannosyltransferase activity", "id": "GO:0000030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000030", "evidence": [ { "database": "UniProtKB", "id": "F1SIK7", "url": "https://www.uniprot.org/uniprotkb/F1SIK7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear inner membrane", "id": "GO:0005637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005637", "evidence": [ { "database": "UniProtKB", "id": "F1SIK7", "url": "https://www.uniprot.org/uniprotkb/F1SIK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 336, "end_pos": 338, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIK7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 773, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIK7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIK7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 237, "end_pos": 239 }, { "start_pos": 336, "end_pos": 338 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIM7-1", "uniprot_ac": "F1SIM7", "uniprot_id": "F1SIM7_PIG", "mass": { "chemical_mass": 25681.0, "monoisotopic_mass": 25681.0 }, "refseq": { "ac": "XP_003134825", "name": "dnaJ homolog subfamily B member 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134825" }, "gene_names": [ { "name": "DNAJB9", "type": "recommended", "evidence": [ { "id": "F1SIM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIM7" } ] }, { "name": "DNAJB9", "type": "synonym", "evidence": [ { "id": "XP_003134825", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134825" } ] } ], "protein_names": [ { "name": "DnaJ homolog subfamily B member 9", "type": "recommended", "evidence": [ { "id": "F1SIM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIM7/entry#names_and_taxonomy" } ] }, { "name": "Endoplasmic reticulum DNA J domain-containing protein 4", "type": "synonym", "evidence": [ { "id": "F1SIM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIM7/entry#names_and_taxonomy" } ] }, { "name": "dnaJ homolog subfamily B member 9", "type": "synonym", "evidence": [ { "id": "XP_003134825", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134825" } ] } ], "function": [ { "annotation": "Co-chaperone for Hsp70 protein HSPA5/BiP that acts as a key repressor of the ERN1/IRE1-mediated unfolded protein response (UPR). J domain-containing co-chaperones stimulate the ATPase activity of Hsp70 proteins and are required for efficient substrate recognition by Hsp70 proteins. In the unstressed endoplasmic reticulum, interacts with the luminal region of ERN1/IRE1 and selectively recruits HSPA5/BiP: HSPA5/BiP disrupts the dimerization of the active ERN1/IRE1 luminal region, thereby inactivating ERN1/IRE1. Also involved in endoplasmic reticulum-associated degradation (ERAD) of misfolded proteins. Required for survival of B-cell progenitors and normal antibody production.", "evidence": [ { "database": "UniProtKB", "id": "F1SIM7", "url": "https://www.uniprot.org/uniprotkb/F1SIM7#function" }, { "database": "UniProtKB", "id": "ARBA00045428", "url": "https://www.uniprot.org/uniprotkb/ARBA00045428#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIM7", "url": "https://www.uniprot.org/uniprotkb/F1SIM7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNAJB9", "url": "https://www.uniprot.org/uniprotkb/F1SIM7", "locus": { "chromosome": "18", "start_pos": 36579453, "end_pos": 36584130, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016653", "url": "https://www.ensembl.org/id/ENSSSCG00000016653" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016653", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016653", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521593", "url": "https://www.ncbi.nlm.nih.gov/gene/100521593", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051948", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051948", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521593", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521593", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HSQHKRH", "url": "https://omabrowser.org/oma/group/HSQHKRH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIM7", "url": "https://www.orthodb.org/?gene=F1SIM7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44360", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44360", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44360:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44360:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134825", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134825", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SIM7", "url": "https://www.uniprot.org/uniprotkb/F1SIM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATPQSVFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTNGKGQKASGSPFEQSFNFNFDDLFKDFGFFGQNQNTRSKKHFENHFQTRQDGSSRQRHHFQEFSFGGGLFDDMFEDMEKMFSFTGFDTTTSRHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDCSGQ", "length": 223, "header": "tr|F1SIM7-1|F1SIM7_PIG Isoform 1 of DnaJ homolog subfamily B member 9 OS=Sus scrofa OX=9823 GN=DNAJB9 PE=4 SV=1 CANONICAL=F1SIM7-1" }, "isoforms": [ { "isoform_ac": "F1SIM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIM7/entry#F1SIM7-1", "sequence": { "sequence": "MATPQSVFIFAICILMITELILASKSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTNGKGQKASGSPFEQSFNFNFDDLFKDFGFFGQNQNTRSKKHFENHFQTRQDGSSRQRHHFQEFSFGGGLFDDMFEDMEKMFSFTGFDTTTSRHTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDCSGQ", "length": 223, "header": "tr|F1SIM7-1|F1SIM7_PIG Isoform 1 of DnaJ homolog subfamily B member 9 OS=Sus scrofa OX=9823 GN=DNAJB9 PE=4 SV=1 CANONICAL=F1SIM7-1" }, "locus": { "chromosome": "18", "start_pos": 36582335, "end_pos": 36580494, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018131.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018131.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017641.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017641.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIM7", "url": "https://www.uniprot.org/uniprotkb/F1SIM7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521593", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521593", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P97554-1", "protein_name": "DnaJ homolog subfamily B member 9", "gene_name": "Dnajb9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATPQSVFVFAICILMITELILASKNYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDIIGHSAFTNGKGQRSNGSPFEQSFNFNFDDLFKDFNLFGQNQNTRSKKHFENHFQTRQDGSSRQRHHFQEFSFGGGLFDDMFEDMEKMFSFSGFDSTNRRTVQTENRFHGSSKHCRTVTQRRGNMVTTYTDCSGQ", "length": 222 }, "evidence": [ { "id": "F1SIM7", "url": "https://omabrowser.org/oma/group/F1SIM7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SIM7", "url": "https://www.uniprot.org/uniprotkb/F1SIM7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "F1SIM7", "url": "https://www.uniprot.org/uniprotkb/F1SIM7" } ], "pmid": "" }, { "name": "misfolded protein binding", "id": "GO:0051787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051787", "evidence": [ { "database": "UniProtKB", "id": "F1SIM7", "url": "https://www.uniprot.org/uniprotkb/F1SIM7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "F1SIM7", "url": "https://www.uniprot.org/uniprotkb/F1SIM7" } ], "pmid": "" }, { "name": "response to unfolded protein", "id": "GO:0006986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006986", "evidence": [ { "database": "UniProtKB", "id": "F1SIM7", "url": "https://www.uniprot.org/uniprotkb/F1SIM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIM7" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 90, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIN0-1", "uniprot_ac": "F1SIN0", "uniprot_id": "F1SIN0_PIG", "mass": { "chemical_mass": 50010.0, "monoisotopic_mass": 50010.0 }, "refseq": { "ac": "XP_003480586", "name": "glucosaminyl (N-acetyl) transferase 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480586" }, "gene_names": [ { "name": "GCNT1", "type": "recommended", "evidence": [ { "id": "F1SIN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ] }, { "name": "GCNT1", "type": "synonym", "evidence": [ { "id": "XP_003480586", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480586" } ] } ], "protein_names": [ { "name": "Glucosaminyl (N-acetyl) transferase 1", "type": "synonym", "evidence": [ { "id": "F1SIN0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIN0/entry#names_and_taxonomy" } ] }, { "name": "glucosaminyl (N-acetyl) transferase 1, core 2", "type": "synonym", "evidence": [ { "id": "XP_003480586", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480586" } ] }, { "name": "glucosaminyl (N-acetyl) transferase 1", "type": "synonym", "evidence": [ { "id": "XP_003480586", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480586" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GCNT1", "url": "https://www.uniprot.org/uniprotkb/F1SIN0", "locus": { "chromosome": "1", "start_pos": 229468268, "end_pos": 229429066, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005277", "url": "https://www.ensembl.org/id/ENSSSCG00000005277" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005277", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005277", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106508649", "url": "https://www.ncbi.nlm.nih.gov/gene/106508649", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003406", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003406", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106508649", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106508649", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NGKLTNM", "url": "https://omabrowser.org/oma/group/NGKLTNM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIN0", "url": "https://www.orthodb.org/?gene=F1SIN0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19297", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19297", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19297:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19297:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02485", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02485", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-913709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003480586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480586", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIN0-1", "url": "https://www.uniprot.org/uniprotkb/F1SIN0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRKFWKRRLFSYPTKYYFLFFIFSLVTFSVLKIHQKPEFVNIGHLELVEENPSSSINCTKVLQGDVDEIQKVKLEILTVKFRERPRWTAYDYINMTADCPSFIKKRKYITEPLSKEEAEFPIAYSIVVHHKIEMLDRLLRAIYMPQNFYCIHVDKKSEESFLAAVIGIASCFSNVFVASQLESVVYASWSRVQADLNCMQDLYQMNADWKYLINLCGMDFPIKTNLEIVRMLKLLKGGSNLETERMPSNKKERWKKHYTVVNGKLTNMGTDKTHPPLETPLFSGSAYFVVSRSYVEYVLENEKIQKFMEWAKDTYSPDEYLWATIQRIPEVPGSLSLSHKYDMSDMHSIARFVKWQYFEGDVSKGAPYPPCSGIHVRSVCVFGAGDLNWLLRTHHLFANKFDTDIDLFAIQCLDEHLRHKALEALKH", "length": 428, "header": "tr|F1SIN0-1|F1SIN0_PIG Isoform 1 of Glucosaminyl (N-acetyl) transferase 1 OS=Sus scrofa OX=9823 GN=GCNT1 PE=3 SV=1 CANONICAL=F1SIN0-1" }, "isoforms": [ { "isoform_ac": "F1SIN0-1", "url": "https://www.uniprot.org/uniprotkb/F1SIN0/entry#F1SIN0-1", "sequence": { "sequence": "MLRKFWKRRLFSYPTKYYFLFFIFSLVTFSVLKIHQKPEFVNIGHLELVEENPSSSINCTKVLQGDVDEIQKVKLEILTVKFRERPRWTAYDYINMTADCPSFIKKRKYITEPLSKEEAEFPIAYSIVVHHKIEMLDRLLRAIYMPQNFYCIHVDKKSEESFLAAVIGIASCFSNVFVASQLESVVYASWSRVQADLNCMQDLYQMNADWKYLINLCGMDFPIKTNLEIVRMLKLLKGGSNLETERMPSNKKERWKKHYTVVNGKLTNMGTDKTHPPLETPLFSGSAYFVVSRSYVEYVLENEKIQKFMEWAKDTYSPDEYLWATIQRIPEVPGSLSLSHKYDMSDMHSIARFVKWQYFEGDVSKGAPYPPCSGIHVRSVCVFGAGDLNWLLRTHHLFANKFDTDIDLFAIQCLDEHLRHKALEALKH", "length": 428, "header": "tr|F1SIN0-1|F1SIN0_PIG Isoform 1 of Glucosaminyl (N-acetyl) transferase 1 OS=Sus scrofa OX=9823 GN=GCNT1 PE=3 SV=1 CANONICAL=F1SIN0-1" }, "locus": { "chromosome": "1", "start_pos": 229466884, "end_pos": 229465601, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083992.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083992.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062171.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062171.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106508649", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106508649", "resource": "KEGG Pathway" }, { "id": "R-SSC-913709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "resource": "Reactome", "description": "O-linked glycosylation of mucins" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MUW5-1", "protein_name": "Glucosaminyl (N-acetyl) transferase 1", "gene_name": "GCNT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLRKLWRRKLFSFPTKYYFLFLAFSVVTFTVLRIHQKTEFVNFGHLELFEENPSSNINCTKILQGDVDEIQKVKLESLTVKFKKRARWTNYDYINMTGDCASFIKKRKYITEPLSKEEAGFPIAYSIVVHHKIEMLDRLLRAIYMPQNFYCIHVDAKSEKSFLAAAVGIASCFSNVFVASQLESVVYASWSRVQADLNCMQDLYQMNAGWKYLINLCGMDFPIKTNLEIVRKLKLLMGENNLETEKMPSHKKERWKKHYEVVNGKLTNMGTDKIHPPLETPLFSGSAYFVVSREYVEYVLQNQNIQKFMEWAKDTYSPDEYLWATIQRIPEVPGSLSLSYKYDTSDMQAIARFVKWQYFEGDVSKGAPYPPCSGVHVRSVCVFGAGDLNWLLHVHHLFANKFDTDIDLFAIQCLDEHLRHKALETLKP", "length": 428 }, "evidence": [ { "id": "F1SIN0", "url": "https://omabrowser.org/oma/group/F1SIN0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NU59-1", "protein_name": "Glucosaminyl (N-acetyl) transferase 1", "gene_name": "GCNT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLKRKLRFFHNSCFRLFLGLTLILVIISVLKVNQKADFLNRRHLDLTKEDPIGDVNCTKILEGDIEEIQKVKLETLSVSFKKRPKLTTSDYINMTTDCSSFTKMRKYIMEPLSSEEAEFPIAYSIVVYHKIEMLDRLLRSIYAPQNFYCIHVDKKSPESFFTAVKGIVSCFDNVFISSQLESVVYASWSRVQADINCMKDLYRRSSNWKYLINLCGMDFPIKTNREIVEKLKALKGENSLETEKMPVYKEVRWKKHYEIVDGKVKNTGIDKQLPPLSTPIFSGSAYFVVSRRFVEYVLENSKILKFIEWAKDTYSPDEYLWATIQRIPDVPGAVSSSDKYDVSDMNALARFVKWQYFEGDVSKGAPYPPCSGIHVRSVCVFGVGDLNWMLRNHHFFANKFDTDVDPFAVKCLEEYLRHKALYLQKN", "length": 426 }, "evidence": [ { "id": "F1SIN0", "url": "https://omabrowser.org/oma/group/F1SIN0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q02742-1", "protein_name": "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase", "gene_name": "GCNT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRTLLRRRLFSYPTKYYFMVLVLSLITFSVLRIHQKPEFVSVRHLELAGENPSSDINCTKVLQGDVNEIQKVKLEILTVKFKKRPRWTPDDYINMTSDCSSFIKRRKYIVEPLSKEEAEFPIAYSIVVHHKIEMLDRLLRAIYMPQNFYCIHVDTKSEDSYLAAVMGIASCFSNVFVASRLESVVYASWSRVQADLNCMKDLYAMSANWKYLINLCGMDFPIKTNLEIVRKLKLLMGENNLETERMPSHKEERWKKRYEVVNGKLTNTGTVKMLPPLETPLFSGSAYFVVSREYVGYVLQNEKIQKLMEWAQDTYSPDEYLWATIQRIPEVPGSLPASHKYDLSDMQAVARFVKWQYFEGDVSKGAPYPPCDGVHVRSVCIFGAGDLNWMLRKHHLFANKFDVDVDLFAIQCLDEHLRHKALETLKH", "length": 428 }, "evidence": [ { "id": "F1SIN0", "url": "https://omabrowser.org/oma/group/F1SIN0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q09324-1", "protein_name": "Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase", "gene_name": "Gcnt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRNLFRRRLFSCPTKYYFMLLVLSLITFSVLRIHQKPEFFSVRHLELAGDDPYSNVNCTKILQGDPEEIQKVKLEILTVQFKKRPRRTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWSRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYTVVDGKLTNTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLENENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGHVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRHKALENLEH", "length": 428 }, "evidence": [ { "id": "F1SIN0", "url": "https://omabrowser.org/oma/group/F1SIN0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q64165-1", "protein_name": "Glucosaminyl (N-acetyl) transferase 1", "gene_name": "Gcnt1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRNLFRRRLFSYPTKYYFMVLVLSLITFSVVRIHQKPEFVSVSHLELSGDDPNSNVNCTKVLQGDPEEIQKVKLEILTVQFKKRPRRTPHDYINMTRDCASFIRTRKYIMEPLTKEEVGFPIAYSIVVHHKIDMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWSRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKSFTGENSLETEKMPPNKEERWKKRYTVVDGKLTNTGVVKAQPPLKTPLFSGSAYFVVTREYVGYVLENKNIQKFMEWAQDTYSPDEFLWATIQRIPEVPGSLPSSHKYDLSDMNAVARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGVGDLSWMLRKHHFFANKFDMDVDPFALQCLEEHLRHKALETLER", "length": 428 }, "evidence": [ { "id": "F1SIN0", "url": "https://omabrowser.org/oma/group/F1SIN0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity", "id": "GO:0003829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003829", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of leukocyte tethering or rolling", "id": "GO:1903238", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903238", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "pmid": "" }, { "name": "protein O-linked glycosylation via N-acetyl-galactosamine", "id": "GO:0016266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016266", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "pmid": "" }, { "name": "leukocyte tethering or rolling", "id": "GO:0050901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050901", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "pmid": "" }, { "name": "cell adhesion molecule production", "id": "GO:0060352", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060352", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "pmid": "" }, { "name": "Golgi cisterna", "id": "GO:0031985", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031985", "evidence": [ { "database": "UniProtKB", "id": "F1SIN0", "url": "https://www.uniprot.org/uniprotkb/F1SIN0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00027JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00033MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00034MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00034UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00037MO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00038MO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00041MO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G00042MO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G00069YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00079IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00094SE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00112IO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00164QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00196CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00238CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00241VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00287UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00288RP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G00318OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00372ZO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00376RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00394CR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00423TL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00428HK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00430ZK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00464AQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00467QU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00468NI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00496OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00560KG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00653TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00707RC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00728SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00729SA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00754TS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00789VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00803TF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00897BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00901NZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00907IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00932UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00944OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00978GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00979XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00980BE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01056RH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01097FM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01243KR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01282UD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01284WP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01302LF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01357LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01437WY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01453BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01457KB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01471GI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01520KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01532FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01577DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01584VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01608UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01625GQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01643LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01674VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01707KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01744JD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01749YL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01759NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01763RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01769GP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01802HL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01869FL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01877VI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01879FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01912GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01922RI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01923FT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01999VP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02032MW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02033VO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02078ZZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02127XA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02150AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02161CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02230VA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02289NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02370LQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02377RY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02379AH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02393LQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02402NL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02403ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02442MH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02530VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02539TH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02562EQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02563ZC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02594WS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02624KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02642GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02799CL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02844SX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02912JK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02942YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02990AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03003KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03016BW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03035VB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03049NB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03052ZR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03129RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03140AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03168RN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03200OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03266UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03289LB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03304QB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03339IQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03340FG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03412UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03425VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03438WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03462LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03494YC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03520RT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03549GG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03549GS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03574EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03588SZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03591CN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03605AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03605AV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03644PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03670RH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03674DU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03720YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03770XP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03792OA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03840OO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03852KN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03877AD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03900NK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03941EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03975EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04002YJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04014AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04014FP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04043RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04062VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04074KJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04088QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04091CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04114CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04116CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04137HF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04185QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04324CR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04348LJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04421LE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04422XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04428BJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04450CG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04459VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04464LR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04478DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04490OD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04505IS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04527KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04531NI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04534UP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04536JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04564SK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04608YG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04638IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04712IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04734LP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04760XP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04765GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04842IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04949CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04970RV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G04984PI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05028TR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05107KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05128BK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05184IQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05208JP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05252QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05259MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05278GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05324AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05378UG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05380VG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05400IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05402FG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05411CD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05413EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05428SU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05456PR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05490PJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05543BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05562YT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05597SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05620JQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05644LC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05670VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05675LB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05690OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05724WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05767GS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05784LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05784QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05835TV", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G05848DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05918XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05970FR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05994BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06067PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06149AZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06172PE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06187MQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06225LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06317RG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06341YK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06366AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06404BM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06408QU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06435TQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06439PI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06448OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06453RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06460LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G06477WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06503AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06507BB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06523WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06558RX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06563KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06577DG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06593KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06650FN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06654RA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06661NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06662ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06676BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06710OE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06755AP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06783AN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G06786CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06840BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06864JC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06938KF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06969QL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G07061BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07061YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07099ZR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07141OG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07145VL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07191NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07210GE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G07360NF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G07405CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07430HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07435LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07443RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07480TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07570IW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G07578MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07610JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07646UD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G07677VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07680WY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07692KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07695IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07724XN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G07764JS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07789RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07817HH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07819HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07869UA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07898UR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07982LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08016YO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08046LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08055MG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08059ZN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08107SW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G08115PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08131WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08140FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08190JB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G08201TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08244KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08244YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08264JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08306FC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08308ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08358DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08366OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08382XT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08425VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08426DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08566CQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08569VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08670DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08784DO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08892TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08941LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08952PH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09079WY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09125MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09139MX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09147XQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09153LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09154YX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09185DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09198TC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09207SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09224US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09226UP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09287HW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09403AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09424UT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09425PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09441VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09575SG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09583DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09588MX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09640VJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09678FF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09698FP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09761AD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09767ET", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09781FH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09845DR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09921KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09938IH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09941BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09980KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10110YZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G10119AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10174LI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10180QX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10287KB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10302UO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10372YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10388YZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10408DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10425AY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G10453CW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10480CH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G10487BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10514PF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10581YA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10604KJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10608NX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10643IE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10679DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10687EF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10688VV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10705PR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10706IL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10816YX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10818TP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10831FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10924UK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10925II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10954DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10993EM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G11083DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11105TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11120EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11198HA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11201QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11210ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11253PI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11272SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11288UE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11366PY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11411KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11427UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11457RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11466IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11679KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11699WH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11778HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11795BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11819NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11827HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11830CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11846US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11848VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11889PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11907PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11936KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11940TK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11980DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12019PJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G12020PN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G12111NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12114XT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G12124FY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G12133SZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12193VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12230UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12232OT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12350CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12396GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12405JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12428MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12486YB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G12526XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12541EY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12548MD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12573LN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12573WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12604MY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12616PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12627CA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12848QL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12891KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12893IS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G13089IH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13101AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13104VJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13122AV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G13168IS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13179DW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G13260JU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13292XY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13346PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13483MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13496UJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13511YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13520PN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G13610SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13616KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13625HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13684QB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13695SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13717KM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G13761UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13767YY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13782XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13785BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13814UH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13816ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13858YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13863XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13890JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13894RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13968BO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13976VB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14009XM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14014EQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14125ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14138XB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14188TW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14205YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14238UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14296RM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14303LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14317JF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14346JI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14375KO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14392HC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14453LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14514DY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14555ST", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14567YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14623FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14645TH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14646AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14693JJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14722QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14781HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14815WH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14829OL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G14868UU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14919CV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14955CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14965PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14978ZY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15011KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15033WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15050SW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15099DI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15220QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15249CA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15270BO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15307GJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15367TG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15393WU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15484AW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15555MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15577KP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15631KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15633AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15635CJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15648GT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15718TL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15756SW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15772KA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15779LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15849KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15876HU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16040ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16078YI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16079QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16268BN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16270SN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16327YW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16344NR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16365JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16458JH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16503YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16536QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16576OQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16682CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16687RY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16709FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16739XD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16756OS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16768QV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16816IR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G16867VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16943AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16964KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16970LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16984QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17039UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17050CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17055DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17077YF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17218WW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17241OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17251XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17269LY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17280PS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17294JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17300DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17320JG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17331IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17331WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17346NI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17361GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17454VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17457PQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17465GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17488LP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17500FP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17527HL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17650QU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G17673XH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17709UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17733ZN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17740TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17752YB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17766PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17827ZK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G17833GN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17843DM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18117YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18123MJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18132YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18135ML", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18299YA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18347PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18362VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18388QV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18423OV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18427DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18463FK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18519LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18559VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18561AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18603OH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18603ZQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18628GH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G18653BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18695QD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18734SR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18800AB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18814OJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18815VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18837VD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18853HA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18855WX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18878GS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G18878PL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18890KW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18892PE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18924BG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18930SC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18932FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18946TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18950NM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18953GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18963DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18982QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19029ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19043KB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19075LN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19135OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19203SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19212IL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19231UV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G19238ZQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19342EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19382GM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19474IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19555CW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19562CL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19618VN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19664QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19756XC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19793PI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19806ZW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19807JC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19954YX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19957ZD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20016GC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20038KA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20059NZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20064ZN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20169US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20222KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20251UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20310DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20359JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20372QO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20438JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20440GC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20453WS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20557GR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20566UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20713UI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20718YD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20735IM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20739VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20745AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20752RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20828MB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20860NB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20878US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20879UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20887HP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20890FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20988ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20993TP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21029LJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21147BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21227CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21246WW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21297DP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21312EA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G21360BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21385AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21412CQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21557NG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21564HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21654MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21672LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21675EO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21696DT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21740EF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21780GG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21807KQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21827YQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21845NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21880FP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21895BD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21905ZO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21939VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21939WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21989SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22070LE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22171KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22185MF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G22327AZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22343QB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22366MN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22385OT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22498IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22525ER", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22536LR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G22540KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22555FB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22564NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22609VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22611UR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22626SX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22629JM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22668GN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22773YW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22782LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22787WJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22793FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22815DC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22841DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22849VW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22970UG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22988HQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23016AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23021IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23021NE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23048PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23066SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23113ER", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23119MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23126IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23193CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23250OE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23262BU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23262LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23285KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23348CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23404PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23416ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23447MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23463KX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23494UZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23502AY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23560WQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23564VW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23580VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23633EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23674BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23801QI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23866EW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23870PO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23888EZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23893ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23975EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23979XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23999MD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24030QV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24055UV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24120OI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24142JB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24151NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24186OV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24204KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24218RK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24256XU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24283IO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24293BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24296ZA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24303LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24327KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24363HJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24366RG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24371IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24407ZG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24475OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24553WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24646NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24646WV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24650WZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24684JT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24720OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24739SA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24790YU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24798BT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24820LP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24845EE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24856YP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24931MM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24951IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25012OX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G25043OJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25064SU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25065CJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25096GQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25127JU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25146DY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25153GE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25233TU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25322NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25323VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25351JT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25380IT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25382RS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25416CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25421NH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25443TD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25489WW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25498HI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25499LZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25524RD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25529RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25538MM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25612EW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25694MT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25716MV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25726HS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25757VH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25764DO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25795DA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25804XU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25848FU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25865TC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25895SL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25934VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25935VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25937FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25953KD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25955UH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25977RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26021BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26080SE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26099QT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26176JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26185YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26209TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26224UH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26228QQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26301NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26325AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26326PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26341AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26392IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26429CZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26441FH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26452XA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G26472EX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26497EU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26570RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26596ON", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26629OM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26688CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26700PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26712CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26718PT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26754XS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26778RK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26827ST", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26913JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26918XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27000YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27071PO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27236KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27248RA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27263EA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27300OX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G27366LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27384IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27409LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27431EQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G27520PV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27523II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27526RV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27605DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27626TX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27655DO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27721RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27796IG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27866VO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27883TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27888XB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27889FI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27893KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28010TC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28023AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28040SC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28077AI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28116PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28132XE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28136FA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28326EU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28329XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28336JR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G28336ME", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28371PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28384MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28465GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28505XN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G28525CY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28546UC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28561QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28570DO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28582VX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28598IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28665FP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28749YQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28757BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28782ND", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28791JD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28801XY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28877HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28878FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28881KN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28885XK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28898NZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G28915JJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28989XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29014XV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29098XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29144HY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29181KK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29231AT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29260RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29290QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29348ES", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G29348FH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29418HB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29432PD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G29477YV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29495CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29503CE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29524AT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29622NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29624ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29628MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29712MR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29725MK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29818FJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29914BX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29940LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29956GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30011VO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30086CM", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G30090IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30120XC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30182VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30241UB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30255XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30284BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30296PK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30304DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30304IT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30372CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30391YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30392XP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30425ZJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30431XW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30434QC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30443NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30464XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30524AR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30524IG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G30584YH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30591GE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30609WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30614QN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30647NK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30651QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30736BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30739AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30835JV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30871VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30872GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30933VG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30976UY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31061SB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31073HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31087MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31101EW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31118TG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31208LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31288FK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31317BJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G31335UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31372TK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31378RD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31457ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31540HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31601FB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31676DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31686QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31729QS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31776ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31849TV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31884XL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G31911LU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31997DH", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G32026LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32216IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32247GO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32289FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32333NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32405GG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32426JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32460TA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G32556JI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32588AA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32590UP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32624RQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32652KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32660EU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32684NS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32735YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32785BQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32853SP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32863IR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32877EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32910OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32944VN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33018IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33024FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33115WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33149BM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G33159AG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33278DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33287EY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33345BX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33350QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33350UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33368AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33401IN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33418YX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33463NC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33479HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33508VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33569OU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33610ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33633KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33658KS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33669VL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33696UB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33719VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33740YL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33758XE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33772BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33825CM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33858ZT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33860PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33866SM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G33877TL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33886DT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33892UJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33899KJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33908QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33911NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33963JX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34049BA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34068FA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34073UX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G34096TA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34100DU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34143CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34162ZB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34168KI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34180FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34293SQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34449IE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34461YU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34539VP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34596BP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34705QH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34706DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34764BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34854XJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34863TS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34891MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34918NO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34962LY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34988TR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35127VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35199BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35234CM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35243PQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35301YI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35316IV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35343OD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35409SK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35419IZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35432EX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35486FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35528EA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35551AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35632SP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35656YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35679QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35750SU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35799DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35805TC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35815ZB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35825BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35875IX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35884UD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35896AC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35898DT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35910XN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G35941VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35945JK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35946GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35949CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35977FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36046VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36047BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36094GH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36138ZV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36157LL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36184OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36231CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36404TW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36406GU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36410YZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36443XA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36460YS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36479RD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36482YM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36511AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36669SS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36674QY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36774NW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36777IJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36786TD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36793ZF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36807NH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36835IG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36855EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36958OJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36970ZN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36983SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37003XY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37115PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37134CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37137WW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37190OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37239FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37241GG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37282LW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37283DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37325HA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37354FL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37381UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37416IR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37435GT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37510PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37528JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37530LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37597VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37619KE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G37638KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37649DI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37653KL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37689ZA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37716XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37779JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37801HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37843CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37927WZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38002BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38004LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38027UF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38065TJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38075PP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G38189CI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38234JH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38296RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38309TB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38316MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38335CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38361SH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38402DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38418FR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38462TG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38465NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38468XG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38506CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38542FY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38568EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38688TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38702PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38722VX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38754AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38767OS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38773BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38799GI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38812YS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38823IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38877IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38887TM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38975ZC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38979WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39037TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39053QM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39098FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39135DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39136MQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39147LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39162CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39174FJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G39246KD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39247UK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39260NC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39279TA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39283IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39305NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39308RS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39321UZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39326PP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39422JF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G39423SD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39496AZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39516UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39523KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39615UL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39624YQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39643KO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39650IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39676NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39720OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39759RL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39762RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39785OI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39802SS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39865FQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39890DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39893XZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39948NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40088CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40107NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40119MV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40289VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40291QP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40294ED", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40319SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40331VO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40338WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40347YM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40393FZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40397HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40445LE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40455IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40463SB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40539YV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40560AU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40560HO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40565CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40580KO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40606LI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40660XA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40681EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40689UV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40709XS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40737YL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40757HO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40778MP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G40792HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40799GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40834NS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40841KI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40852TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40909HG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40957MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40963HH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G40979HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41037IT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41165PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41196CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41220ZV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41245OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41255BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41257VM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41286JH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41322DV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41330YY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41358UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41372SJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G41384PQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41403QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41424HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41434QN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41451JJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41498BE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41539MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41540NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41545LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41552DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41552FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41581KJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41606JQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41780OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41797KJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41816PJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41836YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41866GK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41896LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41919TD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41925MG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41928NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41964LZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42002WQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42039AA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42089IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42105TS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42120JR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42147XQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42206TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42239FO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42239OO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42245KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42263HE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42300CL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42325VD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42368XT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42393CS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42444RF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42545LJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42603RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42611JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42622BJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42632OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42650PV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42665KV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42667BL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42668PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42752PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42772WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42814RP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42828SU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42829WM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42912TT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42927HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43001RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43027VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43059PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43146HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43167FQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43204BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43211ZC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43220WQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43265YA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43415UJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43438SM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43449ON", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43453MN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43506AH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43572AH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43619YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43629KF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43636EV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43639BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43656YN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43662XM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43668RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43766HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43925AD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43933MN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43972TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43993DD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44127LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44198VS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44233ST", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44236OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44342ZF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44374JT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44409MI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44411RJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44414IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44463UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44495BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44543KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44551BR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44597NW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44809JX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G44886WZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44917UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44980KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45086UC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45095CF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45235OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45291XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45313PF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45333UL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45335XP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45367LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45402WV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45465HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45494FB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45563VS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45565NV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45579IH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45596OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45699QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45707SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45718WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45756EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45849QU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G45911EQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45917UD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45941OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46029TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46039GY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46060BG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46135RN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G46168RR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46174KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46241WB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46304CE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46341RW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46360PG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G46500XL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46501AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46520QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46532VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46627WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46681XX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46748BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46754UT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46760LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46785SS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46822ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46915JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46926OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46935AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46960TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47152AG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47174QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47307MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47451TR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47459CP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47537XW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47560LW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47590GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47652ZE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47690ND", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47709SA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47772RH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47818EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47847UW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47925PB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G47935HW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47947JW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G47952MI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47975LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48064BJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G48089QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48115DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48129FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48192XR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G48256FI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48265KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48265YT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48321FJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48355MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48365EK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48367IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48375OF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48415TJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G48440GN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G48499NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48503ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48533PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48791KW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48809BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48809VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48823WJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48851YP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G48854JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49029NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49077EU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49088AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49104WF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49120XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49221CG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49228QV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49302PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49322HB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49327HI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49332RT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49349BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49390AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49394FL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49418IP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49460YF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49499SW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49508KM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49520ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49567XA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49603LL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49668VU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49671FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49721KD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49747JY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49773DF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49844LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49854OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49915EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49944DR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50001GD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50003EV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50003FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50068TE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G50077VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50165MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50192TG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G50198YU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50215WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50223FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50252SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50362JF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50425IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50558NC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50574FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50613GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50619VO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G50652EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50685MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50762OP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50769VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50802FP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G50808YS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50809LR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50849OF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50896EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50905UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50937OW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50970GU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51018LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51103QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51114IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51116JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51140AE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51184PT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G51192NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51216AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51318YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51340HW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51343UJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51349BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51500KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51554PH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51557QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51566FN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51586EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51678TA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51726CK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51747SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51809TM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51840MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51842SQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51862BI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G51883EC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51914CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51914HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51947OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51963NX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G51992CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52070NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52120GQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52120NK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52144RR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52179YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52232VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52236XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52239LM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G52262VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52316LQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52318OF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52376IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52380IS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52447UD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52515QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52608IK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52639VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52652AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52738OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52794ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52839BU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52960IE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52971SZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53000BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53016WG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53064IK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53066XA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G53084MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53084TQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53151WW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53180NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53188WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53206FD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53219BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53220ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53225BR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53246IE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53251NX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53266MQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53303ZX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53330OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53396TS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53404LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53435KM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53472RQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53490OS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53498KG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53502ZZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53522BA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G53527TY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53557CQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G53682MP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53737KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53778MF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53809VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53827VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53856PB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53861OY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53864RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53880XP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G53931RD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53933PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54029EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54043EU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54060QF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54083SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54125VH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54159GO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54163UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54190AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54212AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54264AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54286RT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54334WY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54371SF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54394ER", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54409FD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54439SD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54458VQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54542VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54561II", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54651DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54706BB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54727BI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54765AR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54795GY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54896JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54938LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54994IG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G55019GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55043JL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55051BJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55104BW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G55144QZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G55174HS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55205VX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55259BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55282VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55331YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55459MJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55464VJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55480NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55492KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55529NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55560NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55567ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55592QU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55636WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55638XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55695AY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55700PF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55870EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55880FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55967EP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55986UN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56011JM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56042JM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56044AQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56067ON", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56111FM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56186MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56194FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56245IE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56293JI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56418NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56427WT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56506GT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56529CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56575BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56657VE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56675EV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G56731XW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56734EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56936OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56961QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56979BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57051HS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57068ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57092PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57130XG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57184TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57247BR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G57249PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57296XM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57385MA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57415BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57471CR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57482YT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57545VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57558XS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57568CV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57591KJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G57592QM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57692HM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57772TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57836JM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57840ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57857CB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57872KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57925NK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57949TL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57971KJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57993RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58066JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58078TR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58106KY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58145JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58195CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58201OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58272ZE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58276QF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58293BE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58325KK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58386YP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58402CL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58414HI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58473ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58489YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58511VX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58577QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58580BP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58582XO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58590MR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58620PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58683GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58806SQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58810QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58878NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58890ZT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58959YB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58972RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59031ZJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59035KA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59103LK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59155GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59332RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59379KN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59417ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59432AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59498PG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59588ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59658KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59659CN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59674PZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59684RH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G59712UJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59740UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59745LP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59746EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59757WP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59804FF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59821JJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G59930AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59944EN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59951KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59969VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59970QL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59973RN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59999BN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60059YM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60067UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60190AL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60231EF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60234BX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60275BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60282OI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60341PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60403CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60426XC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60437DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60457MA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60461BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60558WQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60603HJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60615ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60687DB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60731ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60734PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60740GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60741OC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G60799ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60833BB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G60844ZM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G60884FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60884PS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60890ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60925RS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60949GI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60977LC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61011QL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61072JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61108WE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61119KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61159LY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61238HB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61311ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61339UO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61341GD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61358KS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61367OF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61411XJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61459KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61582HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61724IO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61730RY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G61747RH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G61780GR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61788PW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61833XV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61887VA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61889LW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61929YU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61972DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62001NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62014YU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62044IM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62044ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62055DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62070TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62081IR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62165LJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62189UN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62217NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62218ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62221RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62252OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62278MB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62311FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62382LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62437NU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62469XB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62471ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62574YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62577TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62680UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62741IO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62765JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62824TL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63020KP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63161GM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63193BW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63193FF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63194GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63209WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63213PP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63231BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63241SG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63242HY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63258OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63286MF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G63309YY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63317CA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63324SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63404EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63416WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63427CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63444WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63452MH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63474NY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63570GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63596DU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63628UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63664GB", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G63716UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63727WO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63748AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63754TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63787FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63791WF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63794QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63826DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63845LK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63932ZM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63946SF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63978FG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64002SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64008QI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64029DP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64055WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64165TJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64200LI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64206XB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64239KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64242OD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64305XQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64458EC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64476AV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64482PB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64485VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64563CQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64566OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64575OQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64577HA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64774WV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64852XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64878VD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64899EB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64904FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64904QS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64931FF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64937TE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64996BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65037OI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65085NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65124UZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65135MY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65200OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65237AB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65249DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65262KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65263TV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G65321RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65345RD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G65347HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65348IZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65351EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65363PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65364FS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65365ZJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65369IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65396UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65460ES", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65464AD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G65600KO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65667PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65669BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65796KU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65800DR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65805JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65809MG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65837AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65895VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65933SR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G65955VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65978JH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66030KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66038TP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G66040YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66055IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66166BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66184ZO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66188DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66205CG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66215MG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G66253BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66271TT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66284CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66289YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66301VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66307BZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66349AX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66360FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66405LD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66414OW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66419SM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66421OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66435SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66489LJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66505YL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66512FS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66552NS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66576RC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66651WU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66662KA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66669IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66685LA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66711OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66722AJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66741QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66772SE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66788MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66828DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66830UP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66838AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66867PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66872WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66887YI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66959DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66967KV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66977DX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66991YE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67046QM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67053LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67174VO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67212WQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67255LY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67263AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67265VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67277GK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67281LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67300CR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67306YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67354ZM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67371HE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67384KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67400MO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67407NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67471ND", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67561OD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67586UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67590LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67650WH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67686RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67693JC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67775HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67796SA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67821CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67883AD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67920QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67959IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68038KC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68074JL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68133RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68175FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68190BD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68207KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68210RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68232HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68253RD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68264WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68286QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68384KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68391RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68458SS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68480EG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68529LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68557OH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G68563JG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68614NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68636XD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68639VP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68686HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68713BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68721DM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68733PD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68776NM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68881YW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68893BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68894XH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68924IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68931EB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68951DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68986CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68990TK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69022KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69033GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69052CM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69065FL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69093SL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69096ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69118GP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69137GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69176ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69185XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69229KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69233PF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G69261IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69281GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69327YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69420JU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69443HY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69445ZX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69446XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69479TC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G69500TM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69616MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69627IL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69631DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69683VZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69685RI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69723CB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69735UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69748TK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69762CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69762TP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69765IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69774ND", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69808IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69824GC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69831AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69876CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69890SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69897TU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G70074GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70081ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70097NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70125XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70186NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70332AA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70422TG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70497TX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G70520NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70539LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70579MZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70590VH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G70611DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70631UV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70647PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70648DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70688TC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70783BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70815NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70857WY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G70881GH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71057CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71089OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71091AL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71094KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71121NN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71174VV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71234WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71247WG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71283AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71304WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71306LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71307CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71331ST", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71362YO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71409LF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71414GS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71461JM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71479KG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71502EE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71506JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71511JI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71520GT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71538OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71575PR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71620LJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71680KG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71695GL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71698NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71707QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71713QS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71725KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71767XQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71773FH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71816WC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71835SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71964JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71969OB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71999UY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72070EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72154SP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G72175XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72261BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72279PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72287LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72289FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72303HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72304KR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G72319UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72336LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72379PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72446TS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72526DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72579SX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G72614KG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G72620YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72647JE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72647WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72673RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72693SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72729HN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G72735TB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72790LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72827OW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72828HZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G72830DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73033IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73076IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73184QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73209SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73323VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73328UF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73344QV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73351YM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73382HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73423PD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73440TD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73487DJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73507OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73574DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73609FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73616UE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G73653TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73663RH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73723ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73829NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73913LV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74012IM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74038AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74049SP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74130BZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G74130TT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G74179EL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74225AH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74241QD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74242PX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G74252EK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74286WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74294TP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74340SH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74396CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74426IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74463NF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74471QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74473MP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74484ON", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74489AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74491LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74503BE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74542HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74607VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74632FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74684ZW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74701OU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74702CZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74758HW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74782FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74814JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74855NY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G74917JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74918VW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74941GK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74975UG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75042KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75171WW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75178DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75212LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75339KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75381CL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75389LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75407RU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75500ME", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75518WT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G75547HK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75549SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75586OT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75594JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75599HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75621PH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75637RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75646NW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75648IS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75687SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75704MB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75709RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75726JQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75786FQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75851ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75905JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75936VJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75999PF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76031FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76082SD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76104SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76213KN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76214JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76247UK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76299ZG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76330SV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76362LL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G76387IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76389HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76420FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76459ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76465IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76470HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76481US", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76500NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76505ZE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76544YY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76561LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76703CC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76726PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76748ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76844PH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76863NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76874HM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76876LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76974OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76986FH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77109JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77136XW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77149IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77194JD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G77208XM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77213YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77353TH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77413CE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77503IE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77535NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77550KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77557JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77633IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77674IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77696IB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77740PR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77937PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77938VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77938WM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G77960OV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78011OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78032US", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78056MI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78106KK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78127DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78156NN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78262KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78293EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78315FS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78372JK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78482II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78519JI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78617GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78657XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78695ET", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78734OE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78744AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78757VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78767YD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78789AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78792AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78830IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78880TG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78915OI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78918BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78992FU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79011EQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79017QZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79019WG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79021WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79035QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79039LV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79083TY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79137TM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G79222ND", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79224KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79243QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79301TW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79464QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79492YL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79566BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79600DE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G79745IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79762CW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79764DY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79855KD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79878OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79889QN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79915IB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G79968EZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79976GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80027ER", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80147HT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80176YK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80188JS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80204VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80316IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80343TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80345NV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80403NF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80418BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80425FZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80489MK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80577JZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80618TG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80643JD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80667HT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80678HX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80700YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80719YH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80738PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80903UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80951VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81013HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81041HS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81082JG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81112MA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81115FG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81167HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81213GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81214EK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81221QB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G81303NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81439BR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81473HY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81534KB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G81541IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81628EZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81632WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81680BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81759TU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81797TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81825YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81832XS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81944UV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82054AK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82083TQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82092PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82133EG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82175BQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G82195SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82251ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82264VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82267MT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82285OB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82324DC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82334OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82362HL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82366DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82370DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82393KC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82412EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82427FY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82512PT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82621TY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82638QD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82680KA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82693QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82700SN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G82714WL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82785ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82831RJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G82862JX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82870SE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82881HF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82950HY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82952OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82970CD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G83029ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83092KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83103PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83134ZR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83192EO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83206CA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83232LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83244OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83261UB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83412BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83432YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83434MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83476KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83491LR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83495JN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83514WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83519QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83546KK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G83561CI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G83620XJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83697JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83700KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83736YU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83754KL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83831AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83843GL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83952ID", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G83998HE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84003GC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84064VM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84122DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84168WH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84184XU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84228OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84264WM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84273UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84275GW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84285WO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84332AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84366AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84398ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84504MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84515GE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84571QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84596RP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84641CT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84646MS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84647SC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84818UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84821OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84827GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84853WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84969LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85039TI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85213IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85213NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85284LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85284MK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85302NF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85310SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85313YF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85315VP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85392NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85393KI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85463RK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85493TB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85545QE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85608AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85633MF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85670FA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85734JO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G85736BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85828UH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85851IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85890AG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85907UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85947FY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85971OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85972YO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86002IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86013XY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86083AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86085HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86117ZB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G86167MF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86173MX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86186US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86196JH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86199GK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86239DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86294AN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86372GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86407VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86537AD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86557DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86571PO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86669AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86682HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86733FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86736BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86782PI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G86871XB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G87014UA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87249CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87253VG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87256FP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87280CM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87310ZF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87418QZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87420IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87514QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87574LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87676CC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87699TW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G87756AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87808DX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87847UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87984PA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87996EB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88014YP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G88043PD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88050IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88122BX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88139CF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88188XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88204LN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88263BY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88347ND", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G88366YR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G88432QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88500KL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88505QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88508SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88599FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88609PK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G88624YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88687UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88708RX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88725FA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88780VN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88837PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88856QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88936JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88975RE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89058HG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G89119ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89129AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89137AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89210OT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89233QM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89242LQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89242PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89257WJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89270VP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89315II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89398MH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89603EU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89605NX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G89661WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89748NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89753PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89816MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89870ED", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89897ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89946SW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89990JE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90103MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90135ZJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90146ME", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90153WX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90182FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90205AB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90242XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90251SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90260XX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90295ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90350EB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90402OU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90423CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90439ZM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90575VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90639RS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90684PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90689AW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90724OH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90739UE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90746ZG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90754EO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90767ZX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90771OP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90771UI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90791MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90816KP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90818DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90829NZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90965BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90999PU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90999QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91016QL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91017HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91041PO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91043NZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91069QW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91093AL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G91161VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91166AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91181WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91227PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91313DF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G91368WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91410ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91459EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91474LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91637SF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91659ZV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91669BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91687HB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91731DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91732VA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91756JQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G91788FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91809FZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91863BD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91875JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91883RB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91945VH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G92115RL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92155IO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92175OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92194JK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G92232VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92296LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92302BV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92324IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92332SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92354TO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92378XH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G92399AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92424DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92485YK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92509CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92594CB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G92716MQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92829RR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92933OP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92982UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93000QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93045SX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93088DU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93090IR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93160RG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93195AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93213IL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93239VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93279YE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93296CH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93309ZC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93333OF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93389TU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G93450CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93461HH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93505VZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93526OI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93543SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93592ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93597FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93636BY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93696JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93706QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93774RM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G93801LA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93828IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93861XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93909NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93911DY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93913SP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G93984MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93987XA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93994EV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93996ZB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94005KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94058TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94062FP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94070ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94072JB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94092LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94146NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94161VQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94217FB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94234FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94351CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94416QP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94470EI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G94502LK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94514IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94517VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94541HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94566ZN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G94593TA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94595ZZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94599QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94615OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94618YC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G94621HP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94705OR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94768NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94808XV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94824OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94850KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94855OA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94938LU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G94941PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95003CS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95114RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95151JF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95259QI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95292IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95304AA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G95324VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95329IQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95353IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95397YW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G95415HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95430GC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G95448VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95532JO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95560ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95593KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95615QI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95648NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95740GH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95889EP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95925PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96005ME", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96017QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96066HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96079CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96119TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96142QQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96334ZO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96336FY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96349RY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96373OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96463EY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96464PC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96540EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96568SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96576RP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G96576WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96599KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96622FI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96631UP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96643WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96663HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96691CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96746BC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96758WF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96763TB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96857WY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96915PP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96943FZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96950XO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96971EN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97118EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97213ID", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97271OF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97316FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97345NY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97413OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97436XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97452SL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97473TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97494HI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97529OC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97553OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97585KM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97586IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97595JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97608ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97657WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97777ZK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97793RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97840DJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97841LZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97850YT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G97857BW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97860FK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97863GV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G98003WW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98073MH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98074JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98126OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98166HB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98166ZJ", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G98264BW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98270SB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98308VA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98319WB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98383AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98393IW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98412TA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98437LC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98473NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98518WL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98522DF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98540XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98658WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98745FI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98795OG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98873GM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98891IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98912YW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G98925GS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98940EW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98977CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99039KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99041XF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99137GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99210KI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G99236CU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99244AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99264QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99281CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99354AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99372JL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99435JQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99448MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99466GU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G99507PM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G99517NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99522JL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99567UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99730GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99738HT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99738PW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99772FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99783GX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99785MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99792ZO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G99893CA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G99987ZQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99991DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99998AA", "type": "O-linked", "subtype": "Core 2" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 58, "end_pos": 60 }, { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIP3-1", "uniprot_ac": "F1SIP3", "uniprot_id": "F1SIP3_PIG", "mass": { "chemical_mass": 57591.0, "monoisotopic_mass": 57591.0 }, "refseq": {}, "gene_names": [ { "name": "RNPEPL1", "type": "recommended", "evidence": [ { "id": "F1SIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" } ] } ], "protein_names": [ { "name": "Arginyl aminopeptidase like 1", "type": "synonym", "evidence": [ { "id": "F1SIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIP3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIP3", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNPEPL1", "url": "https://www.uniprot.org/uniprotkb/F1SIP3", "locus": { "chromosome": "15", "start_pos": 139551250, "end_pos": 139542602, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016367", "url": "https://www.ensembl.org/id/ENSSSCG00000016367" } ] } } ], "crossref": [ { "id": "F1SIP3", "url": "https://alphafold.ebi.ac.uk/entry/F1SIP3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016367", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016367", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015211", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015211", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027268", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027268", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034015", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034015", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HRREETW", "url": "https://omabrowser.org/oma/group/HRREETW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45726", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45726", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45726:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45726:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01433", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01433", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09127", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09127", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SIP3", "url": "https://www.uniprot.org/uniprotkb/F1SIP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIP3-1", "url": "https://www.uniprot.org/uniprotkb/F1SIP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSATQSSYVEEEGVYRFHMEHPVPAYLVALVAGDLQPADIGPRSRVWAEPCLLPTATSKLSGAVEQWLSAAERLYGPYLWGRYDIVFLPPSFPIVAMENPCLTFIISSILESDEFLVIDVIHEVAHSWFGNAVTNATWEEMWLSEGLATYAQRRITTETYGAAFTCLETAFRLDALHRQMKLLGEDSPVSKLQVKLEPGVNPSHLMNLFTYEKGYCFVYYLSQLCGDPQRFDDFLRAYVEKYKFTSVVAQDLLDSFLAFFPELKEQSVDCRAGLEFERWLNATGPPLAEPDLSQGSSLTRPVEALFQLWTAEPLDQAAASARAIDISKWRTFQTALFLDRLLDGSPLPQEVVMSLSQCYSSLLDSMNAEIRIRWLQIVVRNDYYPDLHRVRRFLESQMSRMYTLPLYEDLCTGALKSFALEVFYQTQGRLHPNLRRTIQQILSQGLGPGAEPSAEQGAAGADSEAAGRRHASPAARGRGPRQRHLSQGRQRVRLALPPLPPDTTIVPSAPGLP", "length": 513, "header": "tr|F1SIP3-1|F1SIP3_PIG Isoform 1 of Arginyl aminopeptidase like 1 OS=Sus scrofa OX=9823 GN=RNPEPL1 PE=3 SV=3 CANONICAL=F1SIP3-1" }, "isoforms": [ { "isoform_ac": "F1SIP3-1", "url": "https://www.uniprot.org/uniprotkb/F1SIP3/entry#F1SIP3-1", "sequence": { "sequence": "MSATQSSYVEEEGVYRFHMEHPVPAYLVALVAGDLQPADIGPRSRVWAEPCLLPTATSKLSGAVEQWLSAAERLYGPYLWGRYDIVFLPPSFPIVAMENPCLTFIISSILESDEFLVIDVIHEVAHSWFGNAVTNATWEEMWLSEGLATYAQRRITTETYGAAFTCLETAFRLDALHRQMKLLGEDSPVSKLQVKLEPGVNPSHLMNLFTYEKGYCFVYYLSQLCGDPQRFDDFLRAYVEKYKFTSVVAQDLLDSFLAFFPELKEQSVDCRAGLEFERWLNATGPPLAEPDLSQGSSLTRPVEALFQLWTAEPLDQAAASARAIDISKWRTFQTALFLDRLLDGSPLPQEVVMSLSQCYSSLLDSMNAEIRIRWLQIVVRNDYYPDLHRVRRFLESQMSRMYTLPLYEDLCTGALKSFALEVFYQTQGRLHPNLRRTIQQILSQGLGPGAEPSAEQGAAGADSEAAGRRHASPAARGRGPRQRHLSQGRQRVRLALPPLPPDTTIVPSAPGLP", "length": 513, "header": "tr|F1SIP3-1|F1SIP3_PIG Isoform 1 of Arginyl aminopeptidase like 1 OS=Sus scrofa OX=9823 GN=RNPEPL1 PE=3 SV=3 CANONICAL=F1SIP3-1" }, "locus": { "chromosome": "15", "start_pos": 139550631, "end_pos": 139546561, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017822.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017822.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017341.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017341.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIP3", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SIP3", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SIP3", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" } ], "pmid": "" }, { "name": "metalloaminopeptidase activity", "id": "GO:0070006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070006", "evidence": [ { "database": "UniProtKB", "id": "F1SIP3", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIP3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 513, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIP3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIP3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" }, { "id": "SM01263", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01263" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M1 leukotriene A4 hydrolase/aminopeptidase C-terminal", "eco_id": "ECO_0000259", "start_pos": 297, "end_pos": 442, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "F1SIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIP3#function" }, { "id": "F1SIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" }, { "id": "PIRSR634015-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR634015-3" } ], "binding_site_uniprot": 122, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 122, "end_pos": 122, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIP3#function" }, { "id": "F1SIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" }, { "id": "PIRSR634015-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR634015-3" } ], "binding_site_uniprot": 126, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 126, "end_pos": 126, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIP3#function" }, { "id": "F1SIP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIP3" }, { "id": "PIRSR634015-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR634015-3" } ], "binding_site_uniprot": 145, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 145, "end_pos": 145, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 281, "end_pos": 283 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIR7-1", "uniprot_ac": "F1SIR7", "uniprot_id": "F1SIR7_PIG", "mass": { "chemical_mass": 111645.0, "monoisotopic_mass": 111645.0 }, "refseq": { "ac": "XP_020929583", "name": "thrombospondin type-1 domain-containing protein 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929583" }, "gene_names": [ { "name": "THSD4", "type": "recommended", "evidence": [ { "id": "F1SIR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIR7" } ] }, { "name": "THSD4", "type": "synonym", "evidence": [ { "id": "XP_020929583", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929583" } ] } ], "protein_names": [ { "name": "Thrombospondin type-1 domain-containing protein 4", "type": "recommended", "evidence": [ { "id": "F1SIR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIR7/entry#names_and_taxonomy" } ] }, { "name": "A disintegrin and metalloproteinase with thrombospondin motifs-like protein 6", "type": "synonym", "evidence": [ { "id": "F1SIR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIR7/entry#names_and_taxonomy" } ] }, { "name": "thrombospondin type-1 domain-containing protein 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020929583", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929583" } ] } ], "function": [ { "annotation": "Promotes FBN1 matrix assembly. Attenuates TGFB signaling, possibly by accelerating the sequestration of large latent complexes of TGFB or active TGFB by FBN1 microfibril assembly, thereby negatively regulating the expression of TGFB regulatory targets, such as POSTN.", "evidence": [ { "database": "UniProtKB", "id": "F1SIR7", "url": "https://www.uniprot.org/uniprotkb/F1SIR7#function" }, { "database": "UniProtKB", "id": "ARBA00056936", "url": "https://www.uniprot.org/uniprotkb/ARBA00056936#function" }, { "database": "UniProtKB", "id": "F1SIR8", "url": "https://www.uniprot.org/uniprotkb/F1SIR8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIR7", "url": "https://www.uniprot.org/uniprotkb/F1SIR7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "THSD4", "url": "https://www.uniprot.org/uniprotkb/F1SIR7", "locus": { "chromosome": "1", "start_pos": 169323977, "end_pos": 168751582, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004980", "url": "https://www.ensembl.org/id/ENSSSCG00000004980" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004980", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004980", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524417", "url": "https://www.ncbi.nlm.nih.gov/gene/100524417", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010294", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010294", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045371", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045371", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524417", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524417", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SQRRCMH", "url": "https://omabrowser.org/oma/group/SQRRCMH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIR7", "url": "https://www.orthodb.org/?gene=F1SIR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SIR8", "url": "https://www.orthodb.org/?gene=F1SIR8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13723", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13723", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13723:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13723:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05986", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05986", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19236", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19236", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5173214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020929583", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929583", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SIR7", "url": "https://www.uniprot.org/uniprotkb/F1SIR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIR8", "url": "https://www.uniprot.org/uniprotkb/F1SIR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIR8-1", "url": "https://www.uniprot.org/uniprotkb/F1SIR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSCFMGSLSVLGSLVLLGLQLVCPQPSTEHRKVPQRMAVAEGAPEDGGGGAPGVWGAWGPWSACSRSCSGGVMEQTRPCLPGSYRVRGGPRPAAPFTGHVVSAVRTSVPLHRSREEPRGPTGLNASRQGPALRGSRHPQARGREPTAERRSRIRGPIGPGKYGYGKAPYILPLQTDSAHSPQRLRRQRPPSRNSRSQGASGSSHSYNPAAHRTPQHGPLYQSDDGPRSGLQASESSIYQLPLTHNQGFPAASSLFHSQETSSSPGMGAHRAAQSFSQPARSTAISCIGAYRQYKLCNTNVCPESSRSIWEVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQAMGYRFYVRQAEKVIDGTPCDQNGTAICVSGQCKSIGCDDYLGSDKVVDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPQGATKINITEMYKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYVIMGNNAISPQVPPHRRPGEPFNGQLGPEGRSQEEGEEKEGDEPKADTHGGAPEIFTSESAQTFPVRHPDRFSSHRPDNVVPPAPQPPRRSRDHNWKQLGTTECSTTCGKGSQYPIFRCVHRSTHEEVPESYCDSSMKPTPEEEPCNIFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKLRPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPAEATPCDNGPCTGKVEWFAGSWSQCSVECGSGTQQREVICVRKNADTFEVLDPYECSFLERPPSQQSCHLKPCGAKWFNTEWSMCSKSCQGGFRVREVRCLSDDMTLSNLCDPQLKPEEKESCNPQDCVPEVDENCKDRYYNCNVVVQARLCVYNYYKTACCVSCTRVASRHSGFLGSR", "length": 1014, "header": "tr|F1SIR7-1|F1SIR7_PIG Isoform 1 of Thrombospondin type-1 domain-containing protein 4 OS=Sus scrofa OX=9823 GN=THSD4 PE=4 SV=3 CANONICAL=F1SIR7-1" }, "isoforms": [ { "isoform_ac": "F1SIR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SIR7/entry#F1SIR7-1", "sequence": { "sequence": "MVSCFMGSLSVLGSLVLLGLQLVCPQPSTEHRKVPQRMAVAEGAPEDGGGGAPGVWGAWGPWSACSRSCSGGVMEQTRPCLPGSYRVRGGPRPAAPFTGHVVSAVRTSVPLHRSREEPRGPTGLNASRQGPALRGSRHPQARGREPTAERRSRIRGPIGPGKYGYGKAPYILPLQTDSAHSPQRLRRQRPPSRNSRSQGASGSSHSYNPAAHRTPQHGPLYQSDDGPRSGLQASESSIYQLPLTHNQGFPAASSLFHSQETSSSPGMGAHRAAQSFSQPARSTAISCIGAYRQYKLCNTNVCPESSRSIWEVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQAMGYRFYVRQAEKVIDGTPCDQNGTAICVSGQCKSIGCDDYLGSDKVVDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPQGATKINITEMYKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYVIMGNNAISPQVPPHRRPGEPFNGQLGPEGRSQEEGEEKEGDEPKADTHGGAPEIFTSESAQTFPVRHPDRFSSHRPDNVVPPAPQPPRRSRDHNWKQLGTTECSTTCGKGSQYPIFRCVHRSTHEEVPESYCDSSMKPTPEEEPCNIFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKLRPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPAEATPCDNGPCTGKVEWFAGSWSQCSVECGSGTQQREVICVRKNADTFEVLDPYECSFLERPPSQQSCHLKPCGAKWFNTEWSMCSKSCQGGFRVREVRCLSDDMTLSNLCDPQLKPEEKESCNPQDCVPEVDENCKDRYYNCNVVVQARLCVYNYYKTACCVSCTRVASRHSGFLGSR", "length": 1014, "header": "tr|F1SIR7-1|F1SIR7_PIG Isoform 1 of Thrombospondin type-1 domain-containing protein 4 OS=Sus scrofa OX=9823 GN=THSD4 PE=4 SV=3 CANONICAL=F1SIR7-1" }, "locus": { "chromosome": "1", "start_pos": 169322188, "end_pos": 168778447, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005493.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005493.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005356.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005356.3" } ] } }, { "isoform_ac": "F1SIR8-1", "url": "https://www.uniprot.org/uniprotkb/F1SIR7/entry#F1SIR8-1", "sequence": { "sequence": "MFVSYLILTLLHVQTAVLARPGGESIGCDDYLGSDKVVDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPQGATKINITEMYKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYVIMGNNAISPQVPPHRRPGEPFNGQLGPEGRSQEEGEEKEGDEPKADTHGGAPEIFTSESAQTFPVRHPDRFSSHRPDNVVPPAPQPPRRSRDHNWKQLGTTECSTTCGKGSQYPIFRCVHRSTHEEVPESYCDSSMKPTPEEEPCNIFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKLRPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPAEATPCDNGPCTGKVEWFAGSWSQCSVECGSGTQQREVICVRKNADTFEVLDPYECSFLERPPSQQSCHLKPCGAKWFNTEWSMCSKSCQGGFRVREVRCLSDDMTLSNLCDPQLKPEEKESCNPQDCVPEVDENCKDRYYNCNVVVQARLCVYNYYKTACCVSCTRVASRHSGFLGSR", "length": 658, "header": "tr|F1SIR8-1|F1SIR7_PIG Computationally mapped isoform of Thrombospondin type-1 domain-containing protein 4 OS=Sus scrofa OX=9823 GN=THSD4 PE=4 SV=3 CANONICAL=F1SIR7-1" }, "locus": { "chromosome": "1", "start_pos": 169322188, "end_pos": 169127086, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005492.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005492.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005355.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005355.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 839, "start_aa": "Thr", "end_pos": 839, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr839", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIR8", "url": "https://www.uniprot.org/uniprotkb/F1SIR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524417", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524417", "resource": "KEGG Pathway" }, { "id": "R-SSC-5173214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5173214", "resource": "Reactome", "description": "O-glycosylation of TSR domain-containing proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AN95-1", "protein_name": "Thrombospondin type-1 domain-containing protein 4", "gene_name": "Thsd4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSHLTSCLSALGALLLLGSQLVCPQPSTEHRKVPQRMAVAEGTPEDSGGGSPGVWGSWGPWSACSRSCSGGVMEQTRPCLPSSYRAPAGSRPSGPTLSITGHVVSAVRTSVPLHRSHEEQRTLAGSSASRQGPTVVRGSRHPQARSREPSERRSRTRGPIGPGKYGYGKAPYILPLQTDTTHTPQRLRRQRPSSRPSRSQEASASKQGYRPPTHHFSHNRPLYQSDSGPRSGLPPSEASIYQLPLTHDQNYPAASSLFHSPELSSNNGARPHGTSQAFSQHLRSTAISCIGAYRQYKLCNTNACPDSGRSIREVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQATGYRFYVRQAERVIDGTPCDQNGTAICVSGQCKSIGCDDFLGSDKVVDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPQGATKINITEMHKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYVIMGNNAISPQVPPHRRPGEPFNGQLETEDGGQEDREEREKNQEKEDSHVEAPEVFTSESTQTFPVRHPERFPSHRPDNLVPPAPQHPRRNRDHNWKQLGTTECSTTCGKGSQYPIFRCVHRNTHEEVPESYCDSSMKPTPEEEPCNLFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQTRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKLRPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHISSLPLEGCGNNRPAEATPCDNGPCTGKVEWFTGSWSQCSVECGSGTQQREVICVRKNADTFEVLDPYECSFLEKPPSQQACHLKPCGAKWFSTEWSMCSKSCQGGFRVREVRCLSDDMTPGSLCDPQLKPEERESCNPQDCVPEVDENCKDKYYNCNVVVQARLCVYNYYKTACCASCTRVANRHTGFLGSR", "length": 1017 }, "evidence": [ { "id": "F1SIR7", "url": "https://omabrowser.org/oma/group/F1SIR7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZPT8-1", "protein_name": "Thrombospondin type 1 domain containing 4", "gene_name": "THSD4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVDSLIVSLRLLSSLAVLGFQFVIPQPSIEHRKVPQRIEEQRDASEDSGAGIPGMWGSWGPWSACSRSCSGGVMEQTRPCLPAYYRERGYQRPGRQYAASERTLAHQNSRHQDSLTAYPGHIISAIRTSVPLHRNEEQLRAGLRASAPSEGHNNSHMSRGAPRGSRHSQSQRHHPKPEKRSRNRNPIGPGKYGYGKVPYILPLQTDTGQQPQKLRRQRQSSRNNVFHQSPSLMNAYSQPASASLQHGNLYQEESGPQAGHQVLGPSVYQSPSFPASQNLFHSSDSTLHGSASHPMVQGQPQPQRSAAIVCVGTYKQYKLCNTNMCPESSRSIREVQCASYNNKPFMGRFYEWEPFAEVKGSQKCELNCRAIGYRFYVRQAEKVIDGTPCDQNGTSICVAGQCKSIGCDDYLGSDKVIDKCGICGGDNTACKVVSGVFKHTLTNLGYHKIVEIPEGATKINITEMSKSNNYLALRSRSGRSIINGNWAIDRPGRYEGGGTMFTYKRPNEISSTAGESFLADGPTNEVLDVYMIHQQPNPGIHYEYIIPGDNVISPQLLAHRRPGEPLNGQLEMPESTNHNEDDLHRETDTLTGQSVGTFPVIPPGRFPSHQPENQVPAVQLSRQNREYNWKQIGKTECTTTCGKGSQYPVFHCVNRVTHEEVPENYCDSSTKPIPEEEACNIFPCPAFWDIGEWSECSKTCGLGMQHRQILCRQIYANRTLTVQQYRCHHLEKPETTSTCQLKICSEWQIRTEWTSCSVPCGVGQRTRDVKCVSNLGDVVDDEECNMKLRPNDIENCDMGPCAKSWFLTEWSDRCSAECGDGIRTRSVVCMTNHVSSLPLEGCGNNRPSETTPCNNGPCAGKVEWFAGSWSQCSTECGGGTQQREVICVRKTEGNFDVLNPYECSYVERPPSQQSCYLKPCGSKWFHTEWSTCSKSCEGGFRVREVRCLSDDMTTSTHCDPQLKPEEKEPCNTHDCIPEIGKVEELCVLTMELHLVEKEMRTAKINTTIAMWWFRPGFVSTPITKQPVVHPVRVWQIDNLGF", "length": 1041 }, "evidence": [ { "id": "F1SIR7", "url": "https://omabrowser.org/oma/group/F1SIR7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q3UTY6-1", "protein_name": "Thrombospondin type-1 domain-containing protein 4", "gene_name": "Thsd4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSYLTSCLSALSTLLLLLGSQLVCPQPSTEHRKVPQRMAVTEGTPEDSGSGSPGVWGSWGPWSACSRSCSGGVMEQTRPCLPSSYRARGGSRPNGRALSITGHVVSAVRTSVPLHRSQEDQRALAGSNASRQGPAVVRGSRHPQARGREPSERRSRTRGPIGPGKYGYGKAPYILPLQTDTTHTPQRLRRQRPSSRHSRSQEASASKQGYRPPTHQFSHSQPLYQSDSGPRSGLPPSEASIYQLPLTHDQSYPAASSLFHRPELSSHHGARPHGAAQAFPQHLRSTAISCIGAYRQYKLCNTNACPESGRSIREVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQATGYRFYVRQAEKVIDGTPCDQNGTAICVSGQCKSIGCDDFLGSDKVLDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPQGATKINITEMHKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEVSSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYVIMRNNAISPQVPPHRRPGEPFNGQLEEEDRGQEDREEREKNQEKEDSQVEAPEVFTSESTQTFPVRHPERFPSHRPDNLVPPAPQPPRRSRDHNWKQLGTTECSTTCGKGSQYPIFRCVHRNTHEEVPESYCDSSMKPTPEEEPCNLFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDMVHDEECNMKLRPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPVEATPCDNGPCTGKVEWFTGSWSQCSIECGSGTQQREVICVRKNADTFEVLDPYECSFLEKPPSQQACHLKPCGAKWFSTEWSMCSKSCQGGFRVREVRCLSDDMTPSSLCDPQLKPEERESCNTQDCVPEVDENCKDKYYNCNVVVQARLCVYNYYKTACCASCTRVANRHVGFLGSR", "length": 1018 }, "evidence": [ { "id": "F1SIR7", "url": "https://omabrowser.org/oma/group/F1SIR7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMP0-1", "protein_name": "Thrombospondin type-1 domain-containing protein 4", "gene_name": "THSD4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVSHFMGSLSVLCFLLLLGFQFVCPQPSTQHRKVPQRMAAEGAPEDDGGGGAPGVWGAWGPWSACSRSCSGGVMEQTRPCLPRSYRLRGGQRPGAPARAFADHVVSAVRTSVPLHRSRDETPALAGTDASRQGPTVLRGSRHPQPQGLEVTGDRRSRTRGTIGPGKYGYGKAPYILPLQTDTAHTPQRLRRQKLSSRHSRSQGASSARHGYSSPAHQVPQHGPLYQSDSGPRSGLQAAEAPIYQLPLTHDQGYPAASSLFHSPETSNNHGVGTHGATQSFSQPARSTAISCIGAYRQYKLCNTNVCPESSRSIREVQCASYNNKPFMGRFYEWEPFAEVKGNRKCELNCQAMGYRFYVRQAEKVIDGTPCDQNGTAICVSGQCKSIGCDDYLGSDKVVDKCGVCGGDNTGCQVVSGVFKHALTSLGYHRVVEIPEGATKINITEMYKSNNYLALRSRSGRSIINGNWAIDRPGKYEGGGTMFTYKRPNEISSTAGESFLAEGPTNEILDVYMIHQQPNPGVHYEYVIMGTNAISPQVPPHRRPGEPFNGQMVTEGRSQEEGEQKGRNEEKEDLRGEAPEMFTSESAQTFPVRHPDRFSPHRPDNLVPPAPQPPRRSRDHNWKQLGTTECSTTCGKGSQYPIFRCVHRSTHEEAPESYCDSSMKPTPEEEPCNIFPCPAFWDIGEWSECSKTCGLGMQHRQVLCRQVYANRSLTVQPYRCQHLEKPETTSTCQLKICSEWQIRTDWTSCSVPCGVGQRTRDVKCVSNIGDVVDDEECNMKLRPNDIENCDMGPCAKSWFLTEWSERCSAECGAGVRTRSVVCMTNHVSSLPLEGCGNNRPAEATPCDNGPCTGKVEWFAGSWSQCSIECGSGTQQREVICVRKNADTFEVLDPSECSFLEKPPSQQSCHLKPCGAKWFSTEWSMCSKSCQGGFRVREVRCLSDDMTLSNLCDPQLKPEERESCNPQDCVPEVDENCKDKYYNCNVVVQARLCVYNYYKTACCASCTRVANRQTGFLGSR", "length": 1018 }, "evidence": [ { "id": "F1SIR7", "url": "https://omabrowser.org/oma/group/F1SIR7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VKV3-1", "protein_name": "Lonely heart, isoform A", "gene_name": "loh", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAKLLLIFSILTILATIHDSSFVQADLTTKERIKKHQDWLREHRKPKTKKKISINSYYELANLWHTRKDLSSPKQKPNNKEEYLENETTSKISNKSDEKVLKSSTIISLNATNPSTSTFKSVLETTTLPSVTTKDLFESGNVATTRQTPKVEEVFSSPNPPQEATSSTSKKAKKKVYPYPRWDKWSDWSSCSRSCGGGVKYQVRKCINRNLLTNNQLTSNACVGYFKRYQLCNDVPCDEQSPDFRASQCSAYNDKEFHGHRYRWEPYVKDDAECELNCMPFGMKSFATLNESVIDGTPCGHPAEYFRSQFWERAVCVDGACKAVQASGEIDGLYAHSGSVSCGGLLCRPVTGIFTRNPLPEHAYIHVTTLPVGASNISITELKNSINLLVLRTSNELAIFNGENTVSESGSYEAVGAVFDYHRIDGAEDSNGVTEWITSIGPIRDSLQLMVFTKSANNTGVKYEYMLPIVSESEENEMSLESSDGLLRSGMEDTSSSSSSRAGRKRIFNWKVIGFSSCTKSCGGGTQTPIIRCIRKNPLRYYSQRRCTHSVKPVLNENLLHCNTQPCPAYWRFDDWGECRCSSSGGLRRREVSCVQELASGLVIHVDKAACMEDQPPMQKQCECPKNRRRNLSRYRLSGPSESSSNSSQVKRSKIDGSDATAIWLVSDWNQYCSVTCGSGVEYRTVFCDRSKAGEQRCDPSTTPESRRPCEKPACELGDWFTGPWSSCNGDCFDLTRTREVLCIRSQLITEHSECTPELKPQSVEKCSHEEVEYCAARWHYSDWSECTKPCGGGTQRRSVRCLEYDIKMNALRESTHCRYTNREPIYRNCNVQACAEVPKTEVTPVCADKFSNCQWASQAKLCSYDYYRDNCCFSCTGGI", "length": 880 }, "evidence": [ { "id": "F1SIR7", "url": "https://omabrowser.org/oma/group/F1SIR7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SIR7", "url": "https://www.uniprot.org/uniprotkb/F1SIR7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "microfibril", "id": "GO:0001527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001527", "evidence": [ { "database": "UniProtKB", "id": "F1SIR7", "url": "https://www.uniprot.org/uniprotkb/F1SIR7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "microfibril assembly", "id": "GO:0160054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160054", "evidence": [ { "database": "UniProtKB", "id": "F1SIR7", "url": "https://www.uniprot.org/uniprotkb/F1SIR7" } ], "pmid": "" }, { "name": "supramolecular fiber organization", "id": "GO:0097435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097435", "evidence": [ { "database": "UniProtKB", "id": "F1SIR7", "url": "https://www.uniprot.org/uniprotkb/F1SIR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 705, "end_pos": 707, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIR7" }, { "id": "PS50900", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50900" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PLAC", "eco_id": "ECO_0000259", "start_pos": 967, "end_pos": 1004, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 839 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 437, "end_pos": 439 }, { "start_pos": 705, "end_pos": 707 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIT3-1", "uniprot_ac": "F1SIT3", "uniprot_id": "F1SIT3_PIG", "mass": { "chemical_mass": 55170.0, "monoisotopic_mass": 55170.0 }, "refseq": { "ac": "XP_003121812", "name": "la-related protein 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121812" }, "gene_names": [ { "name": "LARP6", "type": "recommended", "evidence": [ { "id": "F1SIT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ] }, { "name": "LARP6", "type": "synonym", "evidence": [ { "id": "XP_003121812", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121812" } ] } ], "protein_names": [ { "name": "La ribonucleoprotein 6, translational regulator", "type": "synonym", "evidence": [ { "id": "F1SIT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIT3/entry#names_and_taxonomy" } ] }, { "name": "la-related protein 6", "type": "synonym", "evidence": [ { "id": "XP_003121812", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121812" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LARP6", "url": "https://www.uniprot.org/uniprotkb/F1SIT3", "locus": { "chromosome": "1", "start_pos": 168507976, "end_pos": 168530239, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004974", "url": "https://www.ensembl.org/id/ENSSSCG00000004974" } ] } } ], "crossref": [ { "id": "F1SIT3", "url": "https://alphafold.ebi.ac.uk/entry/F1SIT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004974", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004974", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08033", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08033", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12289", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12289", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522415", "url": "https://www.ncbi.nlm.nih.gov/gene/100522415", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522415", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522415", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WIGGLWR", "url": "https://omabrowser.org/oma/group/WIGGLWR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIT3", "url": "https://www.orthodb.org/?gene=F1SIT3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792:SF71", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792:SF71", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12901", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12901", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003121812", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121812", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SIT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQPCEEALPTPETAVQIRVAIQEAEDVEELEDEEEGAEARSAGDPARYLSPGWGSASEEEPSRGHSGATTSGGENEREDLEQEWQPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHEFMISESQGKESMKAVLIGMKPPKKKPSKEKNQDEESTSSIHLNKSLNRRVEELQYMGDESSANSSSDPESNPTSPLAGRRHVVTNKLSPSGHQNLFLSPNASPCTSPWNSPLAQRKGISRKSPLAEEGRLNLSASPEIFRKCMDYSSDSSVTPSGSPWVRRRRQAEMGTQEKSPRVSPLLSRKMQTADGLPVGVLRLPRGPDNTRGFHGGHERSRAYV", "length": 492, "header": "tr|F1SIT3-1|F1SIT3_PIG Isoform 1 of La ribonucleoprotein 6, translational regulator OS=Sus scrofa OX=9823 GN=LARP6 PE=4 SV=3 CANONICAL=F1SIT3-1" }, "isoforms": [ { "isoform_ac": "F1SIT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SIT3/entry#F1SIT3-1", "sequence": { "sequence": "MAQPCEEALPTPETAVQIRVAIQEAEDVEELEDEEEGAEARSAGDPARYLSPGWGSASEEEPSRGHSGATTSGGENEREDLEQEWQPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHEFMISESQGKESMKAVLIGMKPPKKKPSKEKNQDEESTSSIHLNKSLNRRVEELQYMGDESSANSSSDPESNPTSPLAGRRHVVTNKLSPSGHQNLFLSPNASPCTSPWNSPLAQRKGISRKSPLAEEGRLNLSASPEIFRKCMDYSSDSSVTPSGSPWVRRRRQAEMGTQEKSPRVSPLLSRKMQTADGLPVGVLRLPRGPDNTRGFHGGHERSRAYV", "length": 492, "header": "tr|F1SIT3-1|F1SIT3_PIG Isoform 1 of La ribonucleoprotein 6, translational regulator OS=Sus scrofa OX=9823 GN=LARP6 PE=4 SV=3 CANONICAL=F1SIT3-1" }, "locus": { "chromosome": "1", "start_pos": 168530192, "end_pos": 168508980, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005486.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005486.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005349.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005349.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522415", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522415", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZCR5-1", "protein_name": "La ribonucleoprotein 6, translational regulator", "gene_name": "Larp6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQLGEQTLPGPETTVQIRVAIQEAEDVEDLEEDDEGTSARAAGDTARYLSPGWGSASEEEPSRGHSATTSGGENDREDLEPEWKPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWSLATPPKNGRVQEKVMEYLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHEFMATESQGKENMKAVLIGMRPPKKKPLKDKNHEDEPAAGTRLSRSLNKRVEELQYMGDESSANSSSDPESNPTSPMAGRRHVASNKLSPSGHQNIFLSPNASPCSSPWSSPLAQRKGVSRKSPLAEEGRLNFSTSPEIFRKCMDYSSDSSITPSGSPWVRRRRQAEMGTQEKSPGASPLLSRKMQTADGLPVGVLRLPRGPDDTRGFHGGHERGRACI", "length": 491 }, "evidence": [ { "id": "F1SIT3", "url": "https://omabrowser.org/oma/group/F1SIT3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3H3R1-1", "protein_name": "La-related protein 6 isoform X1", "gene_name": "Larp6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAQLGDQTLPGPETTVQIRVAIQEAEDVEDLEEDDEGTLAQAAGDPARYLSPGWGSASEEEPSRGHSSATTSGGENEREELEPEWKPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWAPATPQKNGRVQEKVMEHLLKLFGTFGIISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHEFMVTESQGRDNMKAVLIGMKPPKKKPLKDRNHDDEPAASTHLSRSLNKRVEELQYMGDESSANSSSDPESNPTSPMAGRRHMATNKLSPSGHQNIFLSPNASPCSSPWSSPLAQRKGVSRKSPLAEEGRLNFSTSPEIFRKCMDYSSDSSVTPSGSPWVRRRRQAEMGTQEKSPGASPLLSRKMQTADGLPVGVLRLPRGPDNTRGFHGGHERSRACT", "length": 492 }, "evidence": [ { "id": "F1SIT3", "url": "https://omabrowser.org/oma/group/F1SIT3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BN59-1", "protein_name": "La-related protein 6", "gene_name": "Larp6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQLGEQTLPGPETTVQIRVAIQEAEDLEDLEEEDEGTSARAAGDPARYLSPGWGSASEEEPSRGHSSATTSGGENDREDLEPEWRPPDEELIRKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVTLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLHLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVDAAIKAHEFMVTESQSKENMKAVLIGMKPPKKKPLKDKNHDDEATAGTHLSRSLNKRVEELQYMGDESSANSSSDPESNPTSPMAGRRHAASNKLSPSGHQNIFLSPNASPCSSPWSSPLAQRKGVSRKSPLAEEGRLNFSTSPEIFRKCMDYSSDSSITPSGSPWVRRRRQAEMGTQEKSPGASPLLSRRMQTADGLPVGVLRLPRGPDNTRGFHGGHERGRACV", "length": 492 }, "evidence": [ { "id": "F1SIT3", "url": "https://omabrowser.org/oma/group/F1SIT3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BRS8-1", "protein_name": "La-related protein 6", "gene_name": "LARP6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEEEPSRGHSGTTASGGENEREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVRRNKLGYVSVKLLTSFKKVKHLTRDWRTTAHALKYSVVLELNEDHRKVRRTTPVPLFPNENLPSKMLLVYDLYLSPKLWALATPQKNGRVQEKVMEHLLKLFGTFGVISSVRILKPGRELPPDIRRISSRYSQVGTQECAIVEFEEVEAAIKAHEFMITESQGKENMKAVLIGMKPPKKKPAKDKNHDEEPTASIHLNKSLNKRVEELQYMGDESSANSSSDPESNPTSPMAGRRHAATNKLSPSGHQNLFLSPNASPCTSPWSSPLAQRKGVSRKSPLAEEGRLNCSTSPEIFRKCMDYSSDSSVTPSGSPWVRRRRQAEMGTQEKSPGTSPLLSRKMQTADGLPVGVLRLPRGPDNTRGFHGHERSRACV", "length": 491 }, "evidence": [ { "id": "F1SIT3", "url": "https://omabrowser.org/oma/group/F1SIT3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "sequence-specific mRNA binding", "id": "GO:1990825", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990825", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" }, { "name": "myosin binding", "id": "GO:0017022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017022", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" }, { "name": "mRNA 5'-UTR binding", "id": "GO:0048027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048027", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" }, { "name": "RNA stem-loop binding", "id": "GO:0035613", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035613", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "RNA processing", "id": "GO:0006396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006396", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" }, { "name": "positive regulation of collagen biosynthetic process", "id": "GO:0032967", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032967", "evidence": [ { "database": "UniProtKB", "id": "F1SIT3", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 374, "end_pos": 376, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIT3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 492, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIT3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIT3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" }, { "id": "PS50961", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50961" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH La-type RNA-binding", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 177, "start_aa": "Gln", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIT3" }, { "id": "PS51938", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51938" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SUZ-C", "eco_id": "ECO_0000259", "start_pos": 427, "end_pos": 485, "start_aa": "Pro", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 317, "end_pos": 319 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 374, "end_pos": 376 }, { "start_pos": 405, "end_pos": 407 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIW2-1", "uniprot_ac": "F1SIW2", "uniprot_id": "F1SIW2_PIG", "mass": { "chemical_mass": 86137.0, "monoisotopic_mass": 86137.0 }, "refseq": { "ac": "XP_001928286", "name": "semaphorin-3G", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928286" }, "gene_names": [ { "name": "SEMA3G", "type": "recommended", "evidence": [ { "id": "F1SIW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ] }, { "name": "SEMA3G", "type": "synonym", "evidence": [ { "id": "XP_001928286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928286" } ] } ], "protein_names": [ { "name": "Semaphorin 3G", "type": "synonym", "evidence": [ { "id": "F1SIW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW2/entry#names_and_taxonomy" } ] }, { "name": "semaphorin-3G", "type": "synonym", "evidence": [ { "id": "XP_001928286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928286" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEMA3G", "url": "https://www.uniprot.org/uniprotkb/F1SIW2", "locus": { "chromosome": "13", "start_pos": 34574200, "end_pos": 34585660, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011440", "url": "https://www.ensembl.org/id/ENSSSCG00000011440" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011440", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011440", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05871", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05871", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157653", "url": "https://www.ncbi.nlm.nih.gov/gene/100157653", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157653", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157653", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DLQAMYL", "url": "https://omabrowser.org/oma/group/DLQAMYL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIW2", "url": "https://www.orthodb.org/?gene=F1SIW2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11036:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11036:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01403", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01403", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928286", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928286", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIW2-1", "url": "https://www.uniprot.org/uniprotkb/F1SIW2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPSAWAICCLLGGLLLHGGSPSPGPSVPRLRLSYRDLLSVNRSAIFLGPRGSLDLRALYLDEYRDRLFLGGRDAIYSLRLDQAWPDAREVLWPPQPGQREECVHKGRDPLVECANFVRVLQPHNRTHLLACGTGAFQPTCALIAVGHRGEHVLHLEPYSVESGRGRCPHEPSRPFASTFVGGELYTGLNADFLGREAMIFRSGGPRPALRSDSDQNLLHDPRFVMAARIPDNSDQDDDKVYFFFSETVPSPDGGLSRVTVSRVGRVCMNDMGGQRVLVNKWSTFLKARLLCSVPGPGGAETHFNQLEDVFLLWPSAGKSLEVYALFSMVSTVFQGYAVCVYHMADIWEVFKGPFAHQDGPQHQWRPYGGKVPFPRPGMCPSKMTSQPGRPFGSTKDYPDEVLQFARAHPLMFRPVRPWRDRPVLVKTHLAQQLRQIVVDRVEAEDGTYDVIFLGTDSGSVLKVIALQEGSAEPEEVVLEELQVFKVPTPITEMEISVKRQMLYVGSRLGVAQLQLHQCETYGSACAECCLARDPYCAWDGASCTRYRPGTSKRRIRRQDIRHGNPALQCLGQSQDEEAAGLVAATTVYGTEHNSTFLECLPKSPQATVHWFLQSRGDEGPNQVKTDERVLQTEQGLLFRRLNRLDAGTYTCMTLEHGFSQVVVRLALEVIVATQLNTLFPRGLRPEEPATREGLASTPSKAWYKDILQLIGFANLPRVDEYCERVWCPSRSRSRSKQAKGKNWVGLELGKKVKSRVQAERNRTPREVEAT", "length": 771, "header": "tr|F1SIW2-1|F1SIW2_PIG Isoform 1 of Semaphorin 3G OS=Sus scrofa OX=9823 GN=SEMA3G PE=3 SV=1 CANONICAL=F1SIW2-1" }, "isoforms": [ { "isoform_ac": "F1SIW2-1", "url": "https://www.uniprot.org/uniprotkb/F1SIW2/entry#F1SIW2-1", "sequence": { "sequence": "MAPSAWAICCLLGGLLLHGGSPSPGPSVPRLRLSYRDLLSVNRSAIFLGPRGSLDLRALYLDEYRDRLFLGGRDAIYSLRLDQAWPDAREVLWPPQPGQREECVHKGRDPLVECANFVRVLQPHNRTHLLACGTGAFQPTCALIAVGHRGEHVLHLEPYSVESGRGRCPHEPSRPFASTFVGGELYTGLNADFLGREAMIFRSGGPRPALRSDSDQNLLHDPRFVMAARIPDNSDQDDDKVYFFFSETVPSPDGGLSRVTVSRVGRVCMNDMGGQRVLVNKWSTFLKARLLCSVPGPGGAETHFNQLEDVFLLWPSAGKSLEVYALFSMVSTVFQGYAVCVYHMADIWEVFKGPFAHQDGPQHQWRPYGGKVPFPRPGMCPSKMTSQPGRPFGSTKDYPDEVLQFARAHPLMFRPVRPWRDRPVLVKTHLAQQLRQIVVDRVEAEDGTYDVIFLGTDSGSVLKVIALQEGSAEPEEVVLEELQVFKVPTPITEMEISVKRQMLYVGSRLGVAQLQLHQCETYGSACAECCLARDPYCAWDGASCTRYRPGTSKRRIRRQDIRHGNPALQCLGQSQDEEAAGLVAATTVYGTEHNSTFLECLPKSPQATVHWFLQSRGDEGPNQVKTDERVLQTEQGLLFRRLNRLDAGTYTCMTLEHGFSQVVVRLALEVIVATQLNTLFPRGLRPEEPATREGLASTPSKAWYKDILQLIGFANLPRVDEYCERVWCPSRSRSRSKQAKGKNWVGLELGKKVKSRVQAERNRTPREVEAT", "length": 771, "header": "tr|F1SIW2-1|F1SIW2_PIG Isoform 1 of Semaphorin 3G OS=Sus scrofa OX=9823 GN=SEMA3G PE=3 SV=1 CANONICAL=F1SIW2-1" }, "locus": { "chromosome": "13", "start_pos": 34585595, "end_pos": 34576548, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012520.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012520.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012192.1", "url": "https://www.ensembl.org/id/ENSSSCP00000012192.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 698, "start_aa": "Thr", "end_pos": 698, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr698", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157653", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157653", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AC48-1", "protein_name": "Semaphorin 3G", "gene_name": "SEMA3G", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRAAAALGWLWGALLAAGSSPPRLRLPYRELLGMNRSVLFFGHRGFLGFRSLYLDEYRDRLFIGGKDVLYSLRLDRASADTKEIYWPPLPGQTEECFRKGKDPATDCANYVRLLQPYNRTHLLACGTGACHPVCTFIYVGHRGETQHAFILDPGSTESGRGRCPHEPDRAFASTIIGGELYAGLTADFLGRDPGIFRSTGTRAALRTEVDQRLLNDPKFVAAYMIPDNDDRDDDKAYFFFTEKVVEADSKEHTIVSRVARVCVNDAGGQRVLVNKWSTFNKARLVCSVPGPGGIDTYFDELEDVFLLRTKDGKNPEIYALFSTVSHVFQGSAVCVYRMADIREVFNGPFAHRDSPLHQWGAYEGRVPYPRPGVCPSKTTNQPRRPYSSTKELPDEVLHFARAHPLMYRAVRPRHHRPLLVKTDLQQRLLQLVVDRVDTEDGQHDVLFLGTDAGSVLKVVVLQMQSSAVTEEVVLEELQVFKVPVPITQMEISVKRQKLYVGASLGVAQVRLHQCKSYGTACAECCLARDPYCAWDGTACTRYQPSGKRRHVRHTSSVHQCLDQNLTVDDLEHVEEKVLYGMEHNSTFLECVPRSPQASVQWFVQRPPDEQRDEVKTDERVLQTEQGLLFRQLHRRDAGVYYCKTLEHGFTQTVAKTALEVLGGEQLARATPRQREDRHPPCPEPWLAAPAPKTWYKDILHLASSADRQRVEEQCLRLWCGHRKGKMAKGKHALAGMDVVKKGRVAKPHGERIRVPRQAAAT", "length": 761 }, "evidence": [ { "id": "F1SIW2", "url": "https://omabrowser.org/oma/group/F1SIW2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1LNH0-1", "protein_name": "Semaphorin 3G", "gene_name": "Sema3g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARCSAWAICCLLGSLLFHMGSPNPGPSTSVPRLRLSYRDLLTTNRSAIFLGPRGSLDLQVMYLDEYRDRLFLGGRDALYSLRLDQAWPDPREVLWPPQPGQKVECVRKGKDPLTECANFVRVLQPHNRTHLLACGTGAFQPICTFITVGHRGEHVLHLDPSSIENGRGRCPHEPSRPFASTFVGGELYTGLTADFLGREAMIFRSGGPRPALRSDSDQSLLHDPRFVMAARIPDNSDRDDDKVYFFFSETVPSPDGGPGHVTVSRVGRVCVNDAGGQRVLVNKWSTFLKARLVCSVPGPGGAETHFDQLEDVFLLWPKAGKNLEVYALFSTVSAVFRGFAVCVYHMVDIWEVFNGPFAHRDGPQHQWGPYGGKVPFPRPGVCPSKMTAQPGRPFGSTKDYPDEVLQFVRGHPLMFQPVRPRRGRPVLVKTHLAQQLCQIVVDRVEAEDGTYDVIFLGTDSGSVLKIIALQGSGLPEPEEVVLEELQVFKVPTPITEMEISVKRQTLYVGSPLGVARLQLHQCETYGSACAECCLARDPYCAWDGTSCARYRPSSGKRRFRRQDIRHGNPAVQCLGQGQSQDKASGLVTRVFGTEHNSTFLECRPKSPQAAVRWFLQRPGDKGADQVKTDERVVQTDQGLLFRRLSRLDAGNYTCTTLEHGFSQTVVRFALEVIAAVQLDSLFLREPRLEEPSAWRSVASASPKTWYKDILQLTGFANLPRVDEYCERVWCRGVGERSGSFRGKGKQAKGKSWAGLELGRKMKSRVQAEHNRTPREVEAT", "length": 780 }, "evidence": [ { "id": "F1SIW2", "url": "https://omabrowser.org/oma/group/F1SIW2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3MYK9-1", "protein_name": "Semaphorin 3G", "gene_name": "SEMA3G", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPSAWAVCCLLGGLLLRGGSPNPGPSVPRLRLSFRDLLSANRSAIFLGPRGSLDLQALYLDEYRDRLFLGGRDAIYSLRLDQTWPDPREVLWPPQPGQREECVHKGRDPLVECANFVRVLHPHNRTHLLACGTGAFQPTCALLAVGHRGEHVLHLEPRSMESGRGRCPHEPSRPFASTFVGGELYTGLNADFLGHEAMIFRSGGPRPALRSDSDQNLLHDPRFVLAARIPDNSDPDDDKVYFFFSETVPSPDGGPGRVTISRVGRVCVNDAGGQRVLVNKWSTFLKARLLCSVPGPGSAETHFDQLEDVFLLWPNSGKSLEVYALFSTVSAVFQGYAICVYHMADIWEVFKGPFAHQDGPQHQWGPYGGKVPFPRPGMCPSKMTAQPGRPFGSTKDYPDEVLQFARAHPLMFRPVRPRRGRPVLVKTHLAQQLRQIVVDRVEAEDGTYDVIFLGTDSGSVLKVIALQGAGSAEPEEVVLEELQVFKVPTPITEMEISVKRQMLYVGSRLGVARLQLHQCETYGSACAECCLARDPYCAWDGASCTRYRPGSNKRRFRRQDIRHGNPALQCLGQSQEEETAGLVATTTVYGTEHNSTFLECLPKSPQAAAHWFLQRPGDERPEQQVKTDERVLQTEQGLLFRRLNRLDAGTYTCMTLEHGFSQVVVRLALEVIVPAQLDILFPRETRPEEPTARGGPTSPYSKAWYKDIMQLIGFANLPRVDEYCERVWCPSRSRTRGKQAKGKSWVGLELGKKVKSRVQAERNRTPREV", "length": 770 }, "evidence": [ { "id": "F1SIW2", "url": "https://omabrowser.org/oma/group/F1SIW2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4LFA9-1", "protein_name": "Semaphorin-3G", "gene_name": "Sema3g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPSAWAICCLLGSLLFHVGIPSPGPSPSVPRLRLSYRDLLSTNRSAIFLGPRGSLDLQVMYLDEYRDRLFLGSRDALYSLRLDQAWPDPREVLWLPQPGQKVECVRKGKDPLTECANFVRVLQPHNRTHLLACGTGAFQPICTFITVGHRGEHVLRLDASSVENGRGRCPHEPSRPFASTFVGGELYTGLTADFLGREAMIFRSGGPRPALRSDSDQSLLHEPRFVMAARIPDNSDRDDDKVYFFFSETVPSPDGGPGHVTISRVGRVCVNDAGGQRVLVNKWSTFLKARLVCSVPGPGGAETHFDQLEDVFLLWPKAGKSLEVYALFSTVSAVFQGFAVCVYHMVDIWEVFNGPFAHRDGPQHQWGPYGGKVPFPRPGVCPSKMTAQPGRPFGSTKDYPDEVLQFVRDHPLMFQPVRPRRGRPVLVKTHLAQRLRQIVVDRVEAEDGTYDVIFLGTDSGSVLKVIALQGGGLTEPEEVVLEELQVFKVPTPITEMEISVKRQTLYVGSPLGVARLQLHQCETYGSACAECCLARDPYCAWDGTACARYRPSSGKRRFRRQDIRHGNPAVQCLGQGQSQNKAASGLMTRVFGTEHNSTFLECLPKSPQAAVRWFLQRPGDKGTDQVKTDERVVQTAQGLLFRRLSRHDAGNYTCTTLEHGFSQTVVRFALEVIAAVQLDSLFLRESRLEEPSAWGSLASASPKTWYKDILQLTGFANLPRVDEYCERVWCRGVGERSGSFRGKGKQAKGKSWAGLELGKKMKSRVLAEHNRTPREVEAT", "length": 780 }, "evidence": [ { "id": "F1SIW2", "url": "https://omabrowser.org/oma/group/F1SIW2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NS98-1", "protein_name": "Semaphorin-3G", "gene_name": "SEMA3G", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPSAWAICWLLGGLLLHGGSSGPSPGPSVPRLRLSYRDLLSANRSAIFLGPQGSLNLQAMYLDEYRDRLFLGGLDALYSLRLDQAWPDPREVLWPPQPGQREECVRKGRDPLTECANFVRVLQPHNRTHLLACGTGAFQPTCALITVGHRGEHVLHLEPGSVESGRGRCPHEPSRPFASTFIDGELYTGLTADFLGREAMIFRSGGPRPALRSDSDQSLLHDPRFVMAARIPENSDQDNDKVYFFFSETVPSPDGGSNHVTVSRVGRVCVNDAGGQRVLVNKWSTFLKARLVCSVPGPGGAETHFDQLEDVFLLWPKAGKSLEVYALFSTVSAVFQGFAVCVYHMADIWEVFNGPFAHRDGPQHQWGPYGGKVPFPRPGVCPSKMTAQPGRPFGSTKDYPDEVLQFARAHPLMFWPVRPRHGRPVLVKTHLAQQLHQIVVDRVEAEDGTYDVIFLGTDSGSVLKVIALQAGGSAEPEEVVLEELQVFKVPTPITEMEISVKRQMLYVGSRLGVAQLRLHQCETYGTACAECCLARDPYCAWDGASCTHYRPSLGKRRFRRQDIRHGNPALQCLGQSQEEEAVGLVAATMVYGTEHNSTFLECLPKSPQAAVRWLLQRPGDEGPDQVKTDERVLHTERGLLFRRLSRFDAGTYTCTTLEHGFSQTVVRLALVVIVASQLDNLFPPEPKPEEPPARGGLASTPPKAWYKDILQLIGFANLPRVDEYCERVWCRGTTECSGCFRSRSRGKQARGKSWAGLELGKKMKSRVHAEHNRTPREVEAT", "length": 782 }, "evidence": [ { "id": "F1SIW2", "url": "https://omabrowser.org/oma/group/F1SIW2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "semaphorin receptor binding", "id": "GO:0030215", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030215", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" }, { "name": "neuropilin binding", "id": "GO:0038191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038191", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" }, { "name": "chemorepellent activity", "id": "GO:0045499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045499", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" }, { "name": "semaphorin-plexin signaling pathway", "id": "GO:0071526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071526", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" }, { "name": "neural crest cell migration", "id": "GO:0001755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001755", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" }, { "name": "negative chemotaxis", "id": "GO:0050919", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050919", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" }, { "name": "negative regulation of axon extension", "id": "GO:0030517", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030517", "evidence": [ { "database": "UniProtKB", "id": "F1SIW2", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 594, "end_pos": 596, "annotation": "n_glycosylation_sequon" }, { "start_pos": 762, "end_pos": 764, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 566, "end_pos": 652, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW2" }, { "id": "PS51004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sema", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 516, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 698 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 594, "end_pos": 596 }, { "start_pos": 762, "end_pos": 764 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIW5-1", "uniprot_ac": "F1SIW5", "uniprot_id": "F1SIW5_PIG", "mass": { "chemical_mass": 46090.0, "monoisotopic_mass": 46090.0 }, "refseq": { "ac": "XP_003125160", "name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125160" }, "gene_names": [ { "name": "B3GNT2", "type": "recommended", "evidence": [ { "id": "F1SIW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW5" } ] }, { "name": "B3GNT2", "type": "synonym", "evidence": [ { "id": "XP_003125160", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125160" } ] } ], "protein_names": [ { "name": "Hexosyltransferase", "type": "recommended", "evidence": [ { "id": "F1SIW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW5/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.-", "type": "synonym", "evidence": [ { "id": "F1SIW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIW5/entry#names_and_taxonomy" } ] }, { "name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2", "type": "synonym", "evidence": [ { "id": "XP_003125160", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125160" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIW5", "url": "https://www.uniprot.org/uniprotkb/F1SIW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "B3GNT2", "url": "https://www.uniprot.org/uniprotkb/F1SIW5", "locus": { "chromosome": "3", "start_pos": 79670748, "end_pos": 79704000, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008374", "url": "https://www.ensembl.org/id/ENSSSCG00000008374" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008374", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008374", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524195", "url": "https://www.ncbi.nlm.nih.gov/gene/100524195", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002659", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002659", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524195", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524195", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VSHLNYC", "url": "https://omabrowser.org/oma/group/VSHLNYC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIW5", "url": "https://www.orthodb.org/?gene=F1SIW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11214", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11214", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11214:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11214:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01762", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01762", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022854", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022854", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-913709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125160", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125160", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "14389", "url": "https://www.rhea-db.org/rhea/14389", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SIW5", "url": "https://www.uniprot.org/uniprotkb/F1SIW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVGRRRIKLLGILMMVNVFIYLIVEVSKSSSQEKNGKGEVIIPKEKFWKISEPPKAYWNREQEKLNRRYNPILNMLANQTGEAYGFSNISHLNYCEPDLRVTSVVSDFDSLPDRFKDFLLYLRCRNYSLLIDQPDKCAKKPFLLLAIKSLTSHFDRRQAIRESWGKETNVGNQTVVRVFLLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPNAEFVFKGDDDVFVNTHHILNYLNSLSKNKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYTGVYPPYAGGGGFLYSGHLALRLYNVTDQVLLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNRNNICSYLGLMLVHSRKPQEMIDIWSRLQNAHLSC", "length": 397, "header": "tr|F1SIW5-1|F1SIW5_PIG Isoform 1 of Hexosyltransferase OS=Sus scrofa OX=9823 GN=B3GNT2 PE=3 SV=2 CANONICAL=F1SIW5-1" }, "isoforms": [ { "isoform_ac": "F1SIW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SIW5/entry#F1SIW5-1", "sequence": { "sequence": "MSVGRRRIKLLGILMMVNVFIYLIVEVSKSSSQEKNGKGEVIIPKEKFWKISEPPKAYWNREQEKLNRRYNPILNMLANQTGEAYGFSNISHLNYCEPDLRVTSVVSDFDSLPDRFKDFLLYLRCRNYSLLIDQPDKCAKKPFLLLAIKSLTSHFDRRQAIRESWGKETNVGNQTVVRVFLLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPNAEFVFKGDDDVFVNTHHILNYLNSLSKNKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYTGVYPPYAGGGGFLYSGHLALRLYNVTDQVLLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNRNNICSYLGLMLVHSRKPQEMIDIWSRLQNAHLSC", "length": 397, "header": "tr|F1SIW5-1|F1SIW5_PIG Isoform 1 of Hexosyltransferase OS=Sus scrofa OX=9823 GN=B3GNT2 PE=3 SV=2 CANONICAL=F1SIW5-1" }, "locus": { "chromosome": "3", "start_pos": 79674038, "end_pos": 79672848, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079052.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079052.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063258.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063258.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIW5", "url": "https://www.uniprot.org/uniprotkb/F1SIW5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524195", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524195", "resource": "KEGG Pathway" }, { "id": "R-SSC-2022854", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022854", "resource": "Reactome", "description": "Keratan sulfate biosynthesis" }, { "id": "R-SSC-913709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "resource": "Reactome", "description": "O-linked glycosylation of mucins" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZEF9-1", "protein_name": "Hexosyltransferase", "gene_name": "B3gnt2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVGRRRVRLLGILMTANVFIYLIVEVSKSSSQDKNGKGGVIIPKEKFWKLSSLPRAYWNREQEKLNRWYNPILNRVANQTGDLFTSPNTSHLNYCEPDSTVMTAVTDFNNLPDRFKDFLLYLRCRNYSLLIDQPKKCAKKPFLLLAIKSLIPHFARRQAIRESWGRETNVGNQTVVRVFLLGKTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDAEFVFKGDDDVFVNTHHILNYLNSLSKSKAKDLFIGDVIHNAGPHRDKKLKYYIPEVFYTGVYPPYAGGGGFLYSGPLALRLYNVTDRVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNKKNICSYIDLMLVHSRKPQEMIDIWSQLQSPNLKC", "length": 397 }, "evidence": [ { "id": "F1SIW5", "url": "https://omabrowser.org/oma/group/F1SIW5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HDQ9-1", "protein_name": "Hexosyltransferase", "gene_name": "B3gnt2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSVGRRRIKLLGILMMANVFIYLIVEVSKNSSQEKNGKGGVIIPKEKFWKIFSPSRAYWNREQEKLNKWYNPILNRLANQTGDLYSSPNISHLGYCEPDPRVMTAVTDFNNLPDRFKDFLLYLRCRNYSLLIDQPKKCAKKPFLLLAIKSLIPHFARRQAIRESWGRETNVGNQTVVRVFLLGKTPPEDNHPDLSDMLKFESERHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDAEFVFKGDDDVFVNTHHILNYLNSLSKNKAKDLFIGDVIHNAGPHRDKKLKYYIPEVFYTGVYPPYAGGGGFLYSGALALRLYNITDRVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNKKNICSYVDLMLVHSRKPQEMIDIWSQLQSPNLKC", "length": 397 }, "evidence": [ { "id": "F1SIW5", "url": "https://omabrowser.org/oma/group/F1SIW5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q9NY97-1", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2", "gene_name": "B3GNT2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVGRRRIKLLGILMMANVFIYFIMEVSKSSSQEKNGKGEVIIPKEKFWKISTPPEAYWNREQEKLNRQYNPILSMLTNQTGEAGRLSNISHLNYCEPDLRVTSVVTGFNNLPDRFKDFLLYLRCRNYSLLIDQPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQESNAGNQTVVRVFLLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGLYPPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNKNNICSYVDLMLVHSRKPQEMIDIWSQLQSAHLKC", "length": 397 }, "evidence": [ { "id": "F1SIW5", "url": "https://omabrowser.org/oma/group/F1SIW5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z222-1", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2", "gene_name": "B3GNT2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVGRRRVKLLGILMMANVFIYLIVEVSKNSSQDKNGKGGVIIPKEKFWKPPSTPRAYWNREQEKLNRWYNPILNRVANQTGELATSPNTSHLSYCEPDSTVMTAVTDFNNLPDRFKDFLLYLRCRNYSLLIDQPKKCAKKPFLLLAIKSLIPHFARRQAIRESWGRETNVGNQTVVRVFLLGKTPPEDNHPDLSDMLKFESDKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDAEFVFKGDDDVFVNTHHILNYLNSLSKSKAKDLFIGDVIHNAGPHRDKKLKYYIPEVFYTGVYPPYAGGGGFLYSGPLALRLYSATSRVHLYPIDDVYTGMCLQKLGLVPEKHKGFRTFDIEEKNKKNICSYIDLMLVHSRKPQEMIDIWSQLQSPNLKC", "length": 397 }, "evidence": [ { "id": "F1SIW5", "url": "https://omabrowser.org/oma/group/F1SIW5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SIW5", "url": "https://www.uniprot.org/uniprotkb/F1SIW5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "glycoprotein biosynthetic process", "id": "GO:0009101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009101", "evidence": [ { "database": "UniProtKB", "id": "F1SIW5", "url": "https://www.uniprot.org/uniprotkb/F1SIW5" } ], "pmid": "" }, { "name": "poly-N-acetyllactosamine biosynthetic process", "id": "GO:0030311", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030311", "evidence": [ { "database": "UniProtKB", "id": "F1SIW5", "url": "https://www.uniprot.org/uniprotkb/F1SIW5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity", "id": "GO:0008532", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008532", "evidence": [ { "database": "UniProtKB", "id": "F1SIW5", "url": "https://www.uniprot.org/uniprotkb/F1SIW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14389", "name": "", "equation": "a beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl derivative + UDP-N-acetyl-alpha-D-glucosamine = an N-acetyl-beta-D-glucosaminyl-(1->3)-beta-D-galactosyl-(1->4)-N-acetyl-beta-D-glucosaminyl derivative + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14389", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14389" } ] }, { "id": "R-SSC-2025724", "name": "B3GNT1,2,3,4,7 add GlcNAc to form Keratan-PG", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2025724", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2025724" } ] }, { "id": "R-SSC-914010", "name": "B3GNT6 transfers GlcNAc to Tn antigen", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-914010", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-914010" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00034UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00112IO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00113FP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G00321UH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00430ZK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00520NI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00545NQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00584LL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G00653TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00728SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00745CN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00810PC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00884ZO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G00944OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00978GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00980BE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00995HW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01001RL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01223IC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G01243KR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01284WP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01304ZB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01325OU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01342FO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G01471GI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01613KN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G01643LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01665LU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01674VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01749YL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01917CF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02076VP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02122FK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02150AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02151HS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02230VA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02244ID", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02289NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02322JK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G02630BJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02679YX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02786XX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G02824PK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02860LZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02942YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03052ZR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03431NA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G03462LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03484HH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03494YC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03574EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03664PT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G03674DU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03754YM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G03900NK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04014FP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04114CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04139QL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G04207EW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G04291CA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G04324CR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04527KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04536JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04557PM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04598XU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G04767QO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G04788IP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G04804HU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G04949CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05028TR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05128BK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05252QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05253EZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G05278GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05353MG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G05411CD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05478GN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G05562XX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G05562YT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05644LC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05654CV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G05874CB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G06036CF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G06295ZP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G06317RG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06327TZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G06435TQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06444RU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G06463RK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G06503AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06523WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06581HO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G06594DV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G06615QC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G06755AP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06821PR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G06990MN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07061BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07145VL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07162IJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G07352BK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G07368IA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G07445MV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G07528DS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07578MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07625PH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G07865ET", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G07932PU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07947TY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G08036QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G08080ND", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G08190JB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G08244KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08246QI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G08264JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08358DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08366OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08493GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G08675PK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G08679LR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G08866CW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G09128UQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G09280JF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G09424UT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09576QH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G09682KX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G09761AD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09814TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G09820OL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G09845DR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09902CG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G10302UO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10385EY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G10397MT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G10563SE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G10599NM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G10684FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G10739QG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G10920IN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G10946GI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G10954DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11010AN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G11083DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11165BC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G11276SJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G11466IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11540FP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G11635LG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G11679KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11734TD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G11827HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12074QJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12111NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12121CY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12405JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12438DW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G12555FT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G12616PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12637ID", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12715RL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G12848QL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12900SG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G13101AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13104VJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13122AV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G13179DW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G13282WA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13346PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13382WY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13496UJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13501ZG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13537KO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G13610SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13616KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13657KC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13663YA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13680AH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13688QP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13720TX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13744OG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G13816ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13863XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13894RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13909GK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13939BK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G13968BO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14015IL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14131GE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14138XB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14205YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14233VW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14346JI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14368WH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G14431ZQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14555ST", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14615WQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G14801HT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14919GO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G14998JE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G15033WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15086ZG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15216UP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G15348EA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G15522RV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G15577KP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15633AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15667KI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15772KA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15952WX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15972DM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G16325IK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16335FI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G16340ZJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G16403CC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16456ZV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G16481GK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G16503YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16702HQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G16709FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16867VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16873YG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G16921OK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G16956YO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G17077YF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17173XA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17207FU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G17315BS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17457PQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17540MV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G17650QU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G17652NI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G17691MO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G17695MH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17709UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17779DH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G17810KS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17970KD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18286BM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G18320HP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18386MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G18507LL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G18544KO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G18814OJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18878PL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19026NP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19075LN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19173OJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19289JN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19541IU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G19555CW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19687OL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G19756XC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19793PI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19954YX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19971JJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G20426LM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20544CY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20650NV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20692QU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G20713UI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20718YD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20758LC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G20835CN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20879UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21421NG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G21557NG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21740EF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21807KQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21827YQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21828OD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G21939VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21969UD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22252FR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22343QB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22426TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22457TG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22629JM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22773YW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22803YZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22841DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22865RK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22889SE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G22912TT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23013VP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23021IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23021NE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23048PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23126IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23166NU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23290TL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23392LW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23416ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23438NR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23463KX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23501RV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23504NK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23546HG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23546LY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23561IL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23564VW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23577TY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G23674BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23718VU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23768VY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G23870PO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24142JB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24154DX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24155DW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24327KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24345FL", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G24363HJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24375OF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24402OX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24475OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24687JM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24748QU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G24891EL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24913UR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G24951IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25012OX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G25044JE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25096GQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G25127JU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25146DY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25233TU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25290DT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25322UQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25392ZR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25459WN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25499LZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25579XD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25612EW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25674QD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25716MV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25835YC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25848FU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25934VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25953KD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26080SE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G26176JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26229WS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26341AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26533WU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G26712CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26718PT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26775OX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26789EP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26802BO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G26945GA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27227MW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27248RA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27384IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27385LP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G27431EQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G27526RV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27562KD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G27626TX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27726WH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G27844UM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G27883TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28136FA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28222JZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G28368FX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G28525CY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28570DO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28749YQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28782ND", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28898NZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G28943FW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G29025YS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29097SS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G29109PM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G29181KK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29301RL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29348ES", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G29445ZK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G29495CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29622NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29628MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29695SR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G29729DB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29849JL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29956GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29988NK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30055DT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30060ZO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30090IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30120OH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30229IT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G30284BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30293NE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G30304IT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30346SO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30483FB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30524AR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30600KL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G30620YZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G30694RX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G30739AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30771XN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G30968MT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31207MF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G31246GN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31345CV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31380TD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31540AF", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31540HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31559RO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G31563MH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31787HV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G31991IV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32216IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32247GO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32303MT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G32405GG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32485KG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32624RQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G32684NS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32785BQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32877EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32944VN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33115WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33249QQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33305GI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G33364OS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33433QA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G33443GF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33508VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33608TH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G33633KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33704KG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33718UW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33719VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33740YL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33802UM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G33825CM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33877TL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33886DT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33908QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33960JW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G33991ME", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34080GN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34118NA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G34135VC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G34276SS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34457IL", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G34477EW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G34585DT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G34988TR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35206AM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35347WX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G35382VN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G35402TO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35528EA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35610QW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G35843HC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35884UD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35941PN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36018FG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36115SK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36149QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36152VT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36155VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36184OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36225RM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36316RB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36341AR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G36352HE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36362BK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36573BV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36597IG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36626AJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36672CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36674QY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36787EI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36807NH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36834ZF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37275PY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G37416IR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37435GT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37467TQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37562WX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37927WZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38027UF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38120GJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38121TQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38189CI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38296RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38316MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38418FR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38568EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38684VZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38702PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38849GM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G38997JB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39052XF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39100MY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39247UK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39283IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39361OH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G39370XG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39417RW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39523KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39601JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G39893XZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40027VO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40069AV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40219EV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40289VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40384AJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40396FX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40428GO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40513EI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G40606LI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40660XA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40709XS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40852TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40909HG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40979HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41068PD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41171HL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41196CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41232YR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G41389HP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41458VW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G41489AY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41552DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41596PV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41659QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41706FJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41711ZZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41823PK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G41823TY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G41878UL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G41928NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42147XQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42300CL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42444RF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42495TI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42504VW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42635DR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G42725VI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G42927HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43040IL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43374FV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43415UJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43873MM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G43923FO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44021SN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44030BX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44043ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44085QQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44137YR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44156OE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44274UK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44361OH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44383XX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G44497RI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44515AZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G44551BR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44639QZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44678XW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44717TO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44772RK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44865WY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G44917UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45086UC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45095CF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45116MR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G45304XA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45335XP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45362KT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45469GB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G45475AS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G45494FB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45521NQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G45565NV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45573QR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G45619LX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G45756EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45844BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G45939NL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46060BG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46165ME", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G46304XY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G46449AK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G46501AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46560SM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G46743AZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46754UT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46772BG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46823CW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46915JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47279LF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47302FP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G47427YD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47520QY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G47557KS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G47560LW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47684RW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47709SA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47828IM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G47845XM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47925PB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G48109OV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48265KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48343XG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48415TJ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G48520OC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48527XN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G48602PL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G48628EN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G48791KW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48884SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49053WC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49077EU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49277CJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49446SO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49508KM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49604DB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49671FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49842UJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G49870FT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G49915EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50013XL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G50337ZH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50343XZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G50370PE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50558NC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50619VO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G50660UT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50753GN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G50933UG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51074KT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51093RA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51140AE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51229TU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51343UJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51472TJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51554PH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51562OR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51586EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51601UI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G51602JA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51766KQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51799AX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G51842SQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51930XP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51994GS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52108KM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G52216BO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52273YQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52354QX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52526MZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52608IK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52790YS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G52802XR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G52839BU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52886CK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53034PL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53206FD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53251NX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53288JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53361RA", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53404LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53472RQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53527OK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53542OI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53567BY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53574BW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53665DJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G53880XP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54083SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54098EJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54125VH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54264AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54335XN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54434IR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54567NU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54695QV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G54706BB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54765AR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54896JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54953LX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G55174HS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55205VX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55259BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55314RK", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G55402MT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55487QV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55638XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55719AB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55890VR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G55986UN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56111FM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56202KK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56516KW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G56571DA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56657VE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56825HR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57040DY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57051HS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57068ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57075KG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G57092PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57338PU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57471CR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57592QM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57598XN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G57937LQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58004KD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58006UM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58016LU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58039UH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58201OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58233BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G58276QF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58315CQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58670TY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58878NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58956TM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58959YB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58972ZH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59031ZJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59069FV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59092NO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59103LK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59306VK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59330FY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59658KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59712UJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59742GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G59951KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60067UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60170CX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60234BX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60341PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60396VE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60483MG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G60558WQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60615ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60799ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60833BB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G60859QN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60860OP", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60884PS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60955ML", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61250GU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61339UO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61367OF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61705AR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61889LW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61958FQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62070TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62095WZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62145FH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62165LJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62189UN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62232KJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G62278MB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62333MG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62595CT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62606MC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G62619LG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G62765JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62836JK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63113XI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63193BW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63193FF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63208BT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G63258OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63308HG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G63403SN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G63596DU", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63748AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63787FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63796IY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G64030QF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G64055WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64078BS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G64102JR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64252WT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64271PC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G64303ZW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G64586PM", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G64618XR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G64666BO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G64881OC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64894MA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G64931FF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65243FP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G65284YE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G65287XE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G65348IZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65363PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65508FE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G65760UO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G65815BT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65832JS", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G65850ES", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66044FT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G66098KC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G66106WQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G66205CG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66215MG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G66375VY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G66419SM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66517II", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G66685LA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66741QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66772SE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66830UP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66847YI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G66961JH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67042FO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G67046QM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67195ED", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67196QU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G67255LY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67300CR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67410LQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G67556VZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G67586UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67590LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67601EU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G67608DN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67612NO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G67624GB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67767BR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G67775HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68007WG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68038KC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68080UR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G68203DZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G68283NG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G68551IQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G68557OH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G68614NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68686HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68776NM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68881YW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68892PJ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G68951DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68998HA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G69098HL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G69233PF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G69631DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69712YH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G69774ND", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70342DW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70602JC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70628DE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G70647PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70783BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71047AU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71094TJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G71174VV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71234WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71338QU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71362YO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71548WJ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G71586EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71961AV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72175XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72475NE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G72526DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72620YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72647WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72693SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72728PS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G72827BS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G72830SG", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G72929XF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72937LG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G73423PD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73440TD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73499UJ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G73563MZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G73574DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73615AX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G73723ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73964QN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G73977KO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G74001HH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G74012IM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74264KM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G74484ON", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74517ZR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G74837NO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G74855NY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G74859XI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G75042KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75178DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75308SV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G75439BK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G75475RA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G75547HK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75594JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75613XE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G75700IQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G75868SR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76031FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76066MR", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G76075NA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G76389HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76470HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76561LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76646HT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G76705YY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G76748ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77160JV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77244ZA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77413CE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77475MM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G77550KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77557JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77880KG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77938WM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G77939BF", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G77960OV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78011OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78194GB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G78333MH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78664ST", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G78759XX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78807JW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G78894EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G79035QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79037RU", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G79302PB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G79364NZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G79470IR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G79566BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79568JT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G79726CC", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G79745IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79855VH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G79878OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79906AG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G79916NT", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G79968EZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80056AS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80107XV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80281PU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80285YU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G80343TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80489MK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80499JV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80618TG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80647PR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80654ZK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80667HT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80690HD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G80710QD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G80952QT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G81041HS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81096RM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81213GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81294ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G81303NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81347KY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82052RE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82083TQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82201IZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82320NZ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82410AF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82494AO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82512PT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82699NN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G82773SI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82785ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82790IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82853YO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G83092KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83140GU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83241PZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83244OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83377MZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G83395ET", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G83402YY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G83434MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83455QZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G83465VL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G83567OS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83697UR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G83754KL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83952ID", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84041GN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G84168WH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84301XG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G84330VA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G84366AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84368MT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G84390MS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G84435SW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G84712FX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G84853WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85393KI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85755BV", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G85809SI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85992CY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G85997RC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86018QV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G86083AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86117ZB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G86321ZQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G86343GW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G86401DW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G86414TE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G86475BX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G86537AD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86634NY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86669AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86871XB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86942VM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87049YA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87097TR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87202UX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87310ZF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87645JA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G87687NN", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G87908HE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G88002CH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88043PD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88089UV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88094DN", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G88122BX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88346DO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88582ZD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88678EQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88759BF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88780VN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88807WA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88828CK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88966ZO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G88975RE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89129AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89202HP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89222FP", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89230YO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89325VN", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89364NG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89461WS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89736EE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89753PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89798IM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89816MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89868JS", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G89996XH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90103MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90130AG", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90133BE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90260XX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90295ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90350EB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90356TP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G90402OU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90451QF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90508ZY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90784AP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G90840KY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91161VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91193KQ", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G91227VL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91365ZH", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G91368WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91624NX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G91637SF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91684MM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92057EA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G92115PW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92115RL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92140GK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G92143CS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G92145EO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G92177FO", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G92296LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92302BV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92327HS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92354TO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92485DY", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G92594VG", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G92962QH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G92982UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93279YE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93461HH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93802RY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G93913SP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G93993PE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G94394GK", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G94529LL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G94531TP", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G94541HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94566ZN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G94626AX", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G94627QP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G94806YM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G94959AA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G95003CS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95028EM", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G95081JK", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G95151JF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95251MI", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G95260HV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G95329IQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95451IS", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G95525PB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G95695ZV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G95706CX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95739UA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G95801WL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G95994EE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G96093AA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96251ED", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G96464PC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96500LU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G96503EZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G96568SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96677EZ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G96691CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96719MC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G96758WF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96857WY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96868MB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G96886RH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G96891EB", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G96919WB", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G97101BG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G97118EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97452SL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97494HI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97595JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97645ML", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G97863GV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97894QD", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G97904TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G98073MH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98115AV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G98127AN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98445EF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G98452OT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G98518WL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98763MO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G98795OG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98863OA", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G98906WL", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99041XF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99165YY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99182WQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G99210KI", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G99264QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99502WP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99517NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99522FR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99567UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99571EV", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99595YZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99684PD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G99730GF", "type": "O-linked", "subtype": "Core 2" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 127, "end_pos": 129 }, { "start_pos": 173, "end_pos": 175 }, { "start_pos": 219, "end_pos": 221 }, { "start_pos": 321, "end_pos": 323 }, { "start_pos": 79, "end_pos": 81 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIX9-1", "uniprot_ac": "F1SIX9", "uniprot_id": "F1SIX9_PIG", "mass": { "chemical_mass": 55248.0, "monoisotopic_mass": 55248.0 }, "refseq": { "ac": "XP_003132296", "name": "glycerate kinase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132296" }, "gene_names": [ { "name": "GLYCTK", "type": "recommended", "evidence": [ { "id": "F1SIX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIX9" } ] }, { "name": "GLYCTK", "type": "synonym", "evidence": [ { "id": "XP_003132296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132296" } ] } ], "protein_names": [ { "name": "Glycerate kinase", "type": "recommended", "evidence": [ { "id": "F1SIX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIX9/entry#names_and_taxonomy" } ] }, { "name": "2.7.1.31", "type": "synonym", "evidence": [ { "id": "F1SIX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIX9/entry#names_and_taxonomy" } ] }, { "name": "glycerate kinase", "type": "synonym", "evidence": [ { "id": "XP_003132296", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132296" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIX9", "url": "https://www.uniprot.org/uniprotkb/F1SIX9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GLYCTK", "url": "https://www.uniprot.org/uniprotkb/F1SIX9", "locus": { "chromosome": "13", "start_pos": 34440264, "end_pos": 34433399, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011432", "url": "https://www.ensembl.org/id/ENSSSCG00000011432" } ] } } ], "crossref": [ { "id": "F1SIX9", "url": "https://alphafold.ebi.ac.uk/entry/F1SIX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011432", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011432", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522516", "url": "https://www.ncbi.nlm.nih.gov/gene/100522516", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007835", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007835", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025286", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025286", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522516", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522516", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKAAWRM", "url": "https://omabrowser.org/oma/group/GKAAWRM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIX9", "url": "https://www.orthodb.org/?gene=F1SIX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12227", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12227", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12227:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12227:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13660", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13660", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70350", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70350", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003132296", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132296", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "23516", "url": "https://www.rhea-db.org/rhea/23516", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SIX9", "url": "https://www.uniprot.org/uniprotkb/F1SIX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAIALQVLRHFARAPSRPLLWGCPLTRLASGMALEEQARQIFESTVGAMLPGPMLQRALSLDPDSGQLKVRDRSFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPRGIRAAMEHAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIRQLAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQKLTKLLAARGANIQELNTIRKALSQLKGGGLAQAAYPAQVVSLILSDVVGDPVEVIASGPTVASVHSVQDCLHILNRYGLRAALPRSVKTVLARADSDPHGPHACGHVLNVIIGSNALALAEAQKQAEALGYKAVVLSTAIQGDVKNVAQFYGLLARVAGACLTMPAAGTSVEEDKQLYELAAQLQLPDLQLKEALEAVVGAQGPVCLLAGGEPTVQLQGSGKGGRNQELALRVGVELGQWPLEPIDVLFLSGGTDGQDGPTEAAGAWVRPELARQAVAEGLDVAAFLAHNDSYTFFCRFQGGAHLLHTGLTGTNVMDTHLLFLRPR", "length": 523, "header": "tr|F1SIX9-1|F1SIX9_PIG Isoform 1 of Glycerate kinase OS=Sus scrofa OX=9823 GN=GLYCTK PE=1 SV=1 CANONICAL=F1SIX9-1" }, "isoforms": [ { "isoform_ac": "F1SIX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SIX9/entry#F1SIX9-1", "sequence": { "sequence": "MAIALQVLRHFARAPSRPLLWGCPLTRLASGMALEEQARQIFESTVGAMLPGPMLQRALSLDPDSGQLKVRDRSFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPRGIRAAMEHAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIRQLAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQKLTKLLAARGANIQELNTIRKALSQLKGGGLAQAAYPAQVVSLILSDVVGDPVEVIASGPTVASVHSVQDCLHILNRYGLRAALPRSVKTVLARADSDPHGPHACGHVLNVIIGSNALALAEAQKQAEALGYKAVVLSTAIQGDVKNVAQFYGLLARVAGACLTMPAAGTSVEEDKQLYELAAQLQLPDLQLKEALEAVVGAQGPVCLLAGGEPTVQLQGSGKGGRNQELALRVGVELGQWPLEPIDVLFLSGGTDGQDGPTEAAGAWVRPELARQAVAEGLDVAAFLAHNDSYTFFCRFQGGAHLLHTGLTGTNVMDTHLLFLRPR", "length": 523, "header": "tr|F1SIX9-1|F1SIX9_PIG Isoform 1 of Glycerate kinase OS=Sus scrofa OX=9823 GN=GLYCTK PE=1 SV=1 CANONICAL=F1SIX9-1" }, "locus": { "chromosome": "13", "start_pos": 34439651, "end_pos": 34436997, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012512.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012512.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012184.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012184.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 257, "start_aa": "Thr", "end_pos": 257, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr257", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIX9", "url": "https://www.uniprot.org/uniprotkb/F1SIX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522516", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522516", "resource": "KEGG Pathway" }, { "id": "R-SSC-70350", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70350", "resource": "Reactome", "description": "Fructose catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HP55-1", "protein_name": "Glycerate kinase", "gene_name": "Glyctk", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAALQVLPSLLRAPSRPFFWGPPVARMSSGMALAEQARQLFESAVGAVQPGPMLQRALSLDPSGKQLKVRDRSFQLRENLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAMEHAGKQEMLLKPHSHIQVFEGAEDNLPDRDALRAALAIQQLAEGLTAEDLLLVLISGGGSALLPAPIPPVTLEEKQMLTKLLAAHGATIQELNTIRKTLSQLKGGGLAQAAYPAQVVSLILSDVIGDPLEVIASGPTVASAHSVQDCLQILNRYGLRAALPRSVKTVLSRADSDPRGPHTCGHVLNVIIGSNSLALAEAQKQAEVLGYRAMVLSTAIQGDVKNVAQFYGLLARVAAARLTSSTAGHPLEEEAKLHQLAAELPLPDLQLEEALEAVAKAKGPVCLLAGGEPTVQLQGSGKGGRNQELALHVGTELGRQPLGPIDVLFLSGGTDGQDGPTKAAGAWVTSDLVSQASAEGLDIATFLSNNDSYTFFSRFQGGTHLLHTGLTGTNVMDVHLLIFRPQ", "length": 523 }, "evidence": [ { "id": "F1SIX9", "url": "https://omabrowser.org/oma/group/F1SIX9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q2U5V7-1", "protein_name": "Glycerate kinase", "gene_name": "GLYCTK", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSLCEHALSLFRSAVGTVRPAPMLKRALKLQGEGCPQLLVNSRAFPLKRGLYLVGFGKAVLGMAAAAEEILGDHLVRGIINVPLGIQESLQRAGMQEMLLKPHSRIQVIEGAKNNLPDPEALRGASAIQELAEGLTADDLLLVLISGGGSALLPAPIPPILLEEKEKLTKMLASRGAAIQELNTVRKILSLLKGGGLARLAYPAQVVSLILSDVIGDPLDIIASGPTAASSHSVQDCLQILAKYNLLHSLPGSVEAVLSSSPTKPTAAKDYSHVCNIIIGSNTLALAEAKRQAEGLGYVTLILSAGVCGDVGRVAVLYCQLICLLCLRLAGLGEGPRGSEVRGNLLQLAAELDIPGLNVAEFLQALQGLEPQKPVCILAGGETTVQLQGTGKGGRNQELALRVGLGLHRARGVEASGLGRCDVVFLSGGTDGQDGPTEAAGAFCSPELVAEALQEGLDAETFLSNNDSYTFFSQFQRGRHLLVTGLTGTNVMDIQLILIRATDRS", "length": 505 }, "evidence": [ { "id": "F1SIX9", "url": "https://omabrowser.org/oma/group/F1SIX9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q08BL7-1", "protein_name": "Glycerate kinase", "gene_name": "glyctk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSLNTRARAVFSAAVEGVHPDMVVRRGLERHGDKLHVGGQSFTLTNNLYLVGFGKAVLGMAAEAERIVGDHLIKGVVSVPHGIQNTLRSHGKEKMLLESNSRITVMEGAKHNLPDTDAQKSAECIRDLASSLTEKDLLLVLISGGGSALLPAPAPPMSLQEKQDVTRKLAAAGATIQELNTVRRALSLLKGGGLAQCASPAKVVALILSDVIGDPLDLIASGPTVRSDSSPEEVWAILDNYKLSDSLPSSVKEVLSKSISGQGSGVKNQPQEVKDNVLNVVIGSNTIALECASRKASELGLRPVILSPGVCGDVRSVARLYGLLSSFACSPGKEPPPELAAEILKLGPEVGIESWDLCRTMNVLVGERKEGWGATCLLAGGEPTVKLSGKGRGGRNQELAMRVGLELSQGEVKSGAVFLSGGTDGQDGPTEAAGAVADGELKEEAASQGLDTDSFLANNDSFTFFSKLSEGRRLLNPGLTGTNVMDVHVMLLPPSPQKDLQ", "length": 502 }, "evidence": [ { "id": "F1SIX9", "url": "https://omabrowser.org/oma/group/F1SIX9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q0VGK3-1", "protein_name": "Glycerate kinase", "gene_name": "Glyctk", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAALQVLPCLLRAPSRPFLWGPPVARMTSGMALAEQARQLFDSAVGAVQPGPMLQRTLSLDPSGKQLKVRDRTFQLQENLYLVGFGKAVLGMAAAADELLGQHLVQGVISVPKGIRAAVELAGKQEMLLKPHSHIQVFEGAEDNLPDRDALRAAQAIQQLAERLTADDLLLVLISGGGSALLPAPIPPVTLEEKQTLTKLLAARGATIQELNTIRKALSQLKGGGLAQAAYPAQVVSLILSDVIGDPLEVIASGPTVASTHSVQDCLHILNHYGLRAALPRSVKTVLSRADSDPHGPHTCGHVLNVIIGSNSLALAEAQRQAEVLGYHAMVLSTAMQGDVRRVAQFYGLLARVAAACLTSSTAERPLEEEAKLHQLAAELQLPDLQLEEALEAVAKAKGPVCLLAGGEPTVQLQGSGKGGRNQELALRVGAELGKQPLGPVDVLFLSGGTDGQDGPTKVAGAWVMSDLVSQASAENLDFATFLDNNDSYTFFCSFQGGTHLLHTGLTGTNVMDVHLLVFHPQ", "length": 523 }, "evidence": [ { "id": "F1SIX9", "url": "https://omabrowser.org/oma/group/F1SIX9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KJF7-1", "protein_name": "Glycerate kinase", "gene_name": "GLYCTK", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAALQVLRHLARAPSGPLLWGGPLARMASSMALAEQARQLFESTVGAVLPGPLLQRALSLDPDSGELKVRDRSFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAMEHAGKQEMLLKPHSRIQVFEGAEDNLPDRDALRAALAIRQLAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQTLTKLLAARGATIQELNTIRKALSQLKGGGLAQAAYPAQVVSLILSDVVGDPVEVIASGPTVASIHSVQDCLYILNRYGLRTALPRSVKTVLARADSDPHGPHTCGHVLNVILGSNALALAEAQKQAEALGYRAVVLSTAIQGDVKSVAQFYGLLARVAGAHLALPGAGASVQEDERLYELAADLQLPDLQLKEALEAVVGAPGPVCLLAGGEPTVRLQGSGKGGRNQELALRVGVELGQWPLGTVDVLFLSGGTDGQDGPTEAAGAWVRPELTSQAAAEGLDVATFLAHNDSHTFFCRFQGGAHLLHTGLTGTNVTDAHFLFLHPQ", "length": 523 }, "evidence": [ { "id": "F1SIX9", "url": "https://omabrowser.org/oma/group/F1SIX9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8IVS8-1", "protein_name": "Glycerate kinase", "gene_name": "GLYCTK", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAALQVLPRLARAPLHPLLWRGSVARLASSMALAEQARQLFESAVGAVLPGPMLHRALSLDPGGRQLKVRDRNFQLRQNLYLVGFGKAVLGMAAAAEELLGQHLVQGVISVPKGIRAAMERAGKQEMLLKPHSRVQVFEGAEDNLPDRDALRAALAIQQLAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQTLTRLLAARGATIQELNTIRKALSQLKGGGLAQAAYPAQVVSLILSDVVGDPVEVIASGPTVASSHNVQDCLHILNRYGLRAALPRSVKTVLSRADSDPHGPHTCGHVLNVIIGSNVLALAEAQRQAEALGYQAVVLSAAMQGDVKSMAQFYGLLAHVARTRLTPSMAGASVEEDAQLHELAAELQIPDLQLEEALETMAWGRGPVCLLAGGEPTVQLQGSGRGGRNQELALRVGAELRRWPLGPIDVLFLSGGTDGQDGPTEAAGAWVTPELASQAAAEGLDIATFLAHNDSHTFFCCLQGGAHLLHTGMTGTNVMDTHLLFLRPR", "length": 523 }, "evidence": [ { "id": "F1SIX9", "url": "https://omabrowser.org/oma/group/F1SIX9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8QZY2-1", "protein_name": "Glycerate kinase", "gene_name": "Glyctk", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAALQVLPCLLRAPSRPLLWGPPVARMTSGMALAEQARQLFDSAVGAVQPGPMLQRTLSLDPSGRQLKVRDRTFQLRENLYLVGFGKAVLGMAAAAEELLAQHLVQGVISVPKGIRAAMEHAGKKEMLLKPHSRVQVFEGAEDNLPDRDALRAALTIQQLAEGLTADDLLLVLISGGGSALLPAPIPPVTLEEKQMLTKLLAARGATIQELNTIRKALSQLKGGGLAQAAYPAQVISLILSDVIGDPLEVIASGPTVASAHSVQDCLHILNHYGLRAALPRSVKTVLSRADSDPHGPHTCGHVLNVIIGSNSLALAEAQRQAEVLGYHAMVLSTAMQGDVKRVARFYGLLARVAAAHLTPSLAERPLEEEAELHQLAAELQLPDLQLEEALEAVAKAKGPVCLLAGGEPTVQLQGSGKGGRNQELALHVGVELGRQPLGPIDVLFLSGGTDGQDGPTKVAGAWVMSDLISQASAESLDIATSLTNNDSYTFFCRFRGGTHLLHTGLTGTNVMDVHLLILHPQ", "length": 523 }, "evidence": [ { "id": "F1SIX9", "url": "https://omabrowser.org/oma/group/F1SIX9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VQC4-1", "protein_name": "Glycerate kinase", "gene_name": "Glyctk", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAKRQTWEQMRQIFVQAVNAVHPEKVFADFQKFDLRPQIGENATDISIKLNGERQDISGKTCHIVGFGKAVLGMANKVQQDLGATSAGGVLSVPVNTLKQFQQPVAPGLVVHEGAANNLPDENALKAAREIKQLAEKMTAQDILFVFISGGGSALLPLPRSPLTLEDKRSIADKLMKRGASIQEINAVRIACSDIKGGRLARLAGQAGLLVTFVLSDIIGDPLELIACGPTIQPEAAASPSDILKKHHVWEELSPEIRRVFEQPEEQKNTSLPEHKVFVVGSNVIATSTAAHEAERLGYIPCVLSCAVQGDVAQVAGDYQRLLHGIQEAKQHGILDPQLREKYAFGERSYPTFRRALEDHMSSKKPLFLICGGEPVIKVSGHGLGGRSQHLALLMSQALHRDEAMRDCTFLSAGTDGIDGPTDAAGAFGDSSVVESYLGDHTLDELAETLRNCDSYNFYKNLAQGEHHVLTGHTGTNVMDLHFLVVP", "length": 487 }, "evidence": [ { "id": "F1SIX9", "url": "https://omabrowser.org/oma/group/F1SIX9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "glycerate kinase activity", "id": "GO:0008887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008887", "evidence": [ { "database": "UniProtKB", "id": "F1SIX9", "url": "https://www.uniprot.org/uniprotkb/F1SIX9" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SIX9", "url": "https://www.uniprot.org/uniprotkb/F1SIX9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SIX9", "url": "https://www.uniprot.org/uniprotkb/F1SIX9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SIX9", "url": "https://www.uniprot.org/uniprotkb/F1SIX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 487, "end_pos": 489, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "23516", "name": "", "equation": "(R)-glycerate + ATP = (2R)-3-phosphoglycerate + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "23516", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/23516" } ] }, { "id": "R-SSC-6799495", "name": "GLYCTK phosphorylates DGA to 3PDGA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-6799497" ], "output_participant_list": [ "R-ALL-6799493" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6799495", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799495" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-6799493", "participant_name": "3PDGA [cytosol]", "crossref": [ { "id": "58272", "database": "ChEBI", "url": "" }, { "id": "ZINC000003869934", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-6799497", "participant_name": "DGA [cytosol]", "crossref": [ { "id": "16659", "database": "ChEBI", "url": "" }, { "id": "5460358", "database": "PubChem Compound", "url": "" }, { "id": "C00258", "database": "KEGG Gene", "url": "" }, { "id": "GLYCERATE", "database": "AraCyc", "url": "" }, { "id": "473-81-4", "database": "CAS", "url": "" }, { "id": "6000-40-4", "database": "CAS", "url": "" }, { "id": "ZINC000000895140", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIX9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 523, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIX9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIX9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIX9" }, { "id": "PF05161", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05161" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MOFRL", "eco_id": "ECO_0000259", "start_pos": 402, "end_pos": 514, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIX9" }, { "id": "PF13660", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13660" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MOFRL-associated", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 288, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 257 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 487, "end_pos": 489 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIZ4-1", "uniprot_ac": "F1SIZ4", "uniprot_id": "F1SIZ4_PIG", "mass": { "chemical_mass": 25682.0, "monoisotopic_mass": 25682.0 }, "refseq": { "ac": "XP_020924523", "name": "testis-expressed protein 264 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924523" }, "gene_names": [ { "name": "TEX264", "type": "recommended", "evidence": [ { "id": "F1SIZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ] }, { "name": "TEX264", "type": "synonym", "evidence": [ { "id": "XP_020924523", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924523" } ] } ], "protein_names": [ { "name": "Testis expressed 264, ER-phagy receptor", "type": "synonym", "evidence": [ { "id": "F1SIZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4/entry#names_and_taxonomy" } ] }, { "name": "testis-expressed protein 264 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020924523", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924523" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEX264", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4", "locus": { "chromosome": "13", "start_pos": 33924177, "end_pos": 33897638, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011424", "url": "https://www.ensembl.org/id/ENSSSCG00000011424" } ] } } ], "crossref": [ { "id": "F1SIZ4", "url": "https://alphafold.ebi.ac.uk/entry/F1SIZ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011424", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011424", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102161929", "url": "https://www.ncbi.nlm.nih.gov/gene/102161929", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "PTHR15949", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15949", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15949:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15949:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_020924523", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924523", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDLLLLGLIGALTLLLLLTLLAFAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDNPHMERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSRGPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTHSEHSYSESGASGSSFEELDLEGEGPLGEPKLSPDAEPLGASKWPREPSTPEKGEE", "length": 239, "header": "tr|F1SIZ4-1|F1SIZ4_PIG Isoform 1 of Testis expressed 264, ER-phagy receptor OS=Sus scrofa OX=9823 GN=TEX264 PE=1 SV=4 CANONICAL=F1SIZ4-1" }, "isoforms": [ { "isoform_ac": "F1SIZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4/entry#F1SIZ4-1", "sequence": { "sequence": "MSDLLLLGLIGALTLLLLLTLLAFAGYSGLLAGVAVSAGSPPIRNVTMAYKFHMGPYSETGRLFTESCSVSPKLRSIAVYYDNPHMERKLCAHPRLEIYQQDQIYFMCPLARQGDFYVPEVKETERRSRGPVEASDTQVDSTGADTMSDSSSVSLEVGPGSRETSAATLSPGVSSRGWDDGDTHSEHSYSESGASGSSFEELDLEGEGPLGEPKLSPDAEPLGASKWPREPSTPEKGEE", "length": 239, "header": "tr|F1SIZ4-1|F1SIZ4_PIG Isoform 1 of Testis expressed 264, ER-phagy receptor OS=Sus scrofa OX=9823 GN=TEX264 PE=1 SV=4 CANONICAL=F1SIZ4-1" }, "locus": { "chromosome": "13", "start_pos": 33923866, "end_pos": 33897672, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012504.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012504.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012176.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012176.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "autophagosome membrane", "id": "GO:0000421", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000421", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ], "pmid": "" }, { "name": "replication fork", "id": "GO:0005657", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005657", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein-DNA covalent cross-linking repair", "id": "GO:0106300", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106300", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ4", "url": "https://www.uniprot.org/uniprotkb/F1SIZ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SIZ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 239, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SIZ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SIZ4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SIZ8-1", "uniprot_ac": "F1SIZ8", "uniprot_id": "F1SIZ8_PIG", "mass": { "chemical_mass": 97280.0, "monoisotopic_mass": 97280.0 }, "refseq": { "ac": "XP_003132286", "name": "putative RNA-binding protein 15B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132286" }, "gene_names": [ { "name": "RBM15B", "type": "recommended", "evidence": [ { "id": "F1SIZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ] }, { "name": "RBM15B", "type": "synonym", "evidence": [ { "id": "XP_003132286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132286" } ] } ], "protein_names": [ { "name": "Putative RNA-binding protein 15B", "type": "recommended", "evidence": [ { "id": "F1SIZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8/entry#names_and_taxonomy" } ] }, { "name": "RNA-binding motif protein 15B", "type": "synonym", "evidence": [ { "id": "F1SIZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8/entry#names_and_taxonomy" } ] }, { "name": "putative RNA-binding protein 15B", "type": "synonym", "evidence": [ { "id": "XP_003132286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132286" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RBM15B", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8", "locus": { "chromosome": "13", "start_pos": 33667153, "end_pos": 33664472, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011420", "url": "https://www.ensembl.org/id/ENSSSCG00000011420" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011420", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011420", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12554", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12554", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12556", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12556", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12558", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12558", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21550", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21550", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519215", "url": "https://www.ncbi.nlm.nih.gov/gene/100519215", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034475", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034475", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034535", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034535", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519215", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519215", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GLFRQFQ", "url": "https://omabrowser.org/oma/group/GLFRQFQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SIZ8", "url": "https://www.orthodb.org/?gene=F1SIZ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07744", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07744", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132286", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132286", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SIZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRQSERDSSPGGRGSSSSAKRPREREREAEAGGRRAAHKASGGTKHPVPTRAREKPRGSGGGGGGHRDGRGAGDANHRASSGRASGSGAGGGGRGGKASGDPGASGASPRASPLPPPPPPPGSEPAGPGSSAAAPEYKTLLISSLSPALPAEHLEDRLFHQFKRFGEISLRLSHTPELGRVAYVNFRHPQDAREARQHALARQLLLYDRPLKVEPVYLRGGGGGGGSSRRSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYKQRSLSPVAAPPLREPRARHAAAAFALDAAAAAAVGLSRERALDYYGLYDDRGRPYGYPAVCEEDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQQYQPSPLPVHYELLPDGYTRHRNLDADLRVRDRTPPHLLYSDRDRTFLEGDWTSPSKSSDRRNSLEGYSRSVRSRSGERWGGDGDRGLPKPWEERRKRRSLSSDRGRTTHSPYEERSRTKGGGQQADRGSDRTPERSRKENHSSEGTKELSGNSLSNSRHGAEERSHHHHHEAPDSSHGKKTRESERNHRTTEAETKPLEEPKHETKKLKNLSEYAQTLQLGWNGLLVLKNSCFPTSMHILEGDQGVISGLLKDHTSGSKLTQLKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLATQATPSGPGTEGMPTVEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGSKGRDSTGMLYAFPPCDFSQQYLQSALRTLGKLEEEHMVIVIVRDTA", "length": 893, "header": "tr|F1SIZ8-1|F1SIZ8_PIG Isoform 1 of Putative RNA-binding protein 15B OS=Sus scrofa OX=9823 GN=RBM15B PE=3 SV=4 CANONICAL=F1SIZ8-1" }, "isoforms": [ { "isoform_ac": "F1SIZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8/entry#F1SIZ8-1", "sequence": { "sequence": "MKRQSERDSSPGGRGSSSSAKRPREREREAEAGGRRAAHKASGGTKHPVPTRAREKPRGSGGGGGGHRDGRGAGDANHRASSGRASGSGAGGGGRGGKASGDPGASGASPRASPLPPPPPPPGSEPAGPGSSAAAPEYKTLLISSLSPALPAEHLEDRLFHQFKRFGEISLRLSHTPELGRVAYVNFRHPQDAREARQHALARQLLLYDRPLKVEPVYLRGGGGGGGSSRRSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYKQRSLSPVAAPPLREPRARHAAAAFALDAAAAAAVGLSRERALDYYGLYDDRGRPYGYPAVCEEDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQQYQPSPLPVHYELLPDGYTRHRNLDADLRVRDRTPPHLLYSDRDRTFLEGDWTSPSKSSDRRNSLEGYSRSVRSRSGERWGGDGDRGLPKPWEERRKRRSLSSDRGRTTHSPYEERSRTKGGGQQADRGSDRTPERSRKENHSSEGTKELSGNSLSNSRHGAEERSHHHHHEAPDSSHGKKTRESERNHRTTEAETKPLEEPKHETKKLKNLSEYAQTLQLGWNGLLVLKNSCFPTSMHILEGDQGVISGLLKDHTSGSKLTQLKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLATQATPSGPGTEGMPTVEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGSKGRDSTGMLYAFPPCDFSQQYLQSALRTLGKLEEEHMVIVIVRDTA", "length": 893, "header": "tr|F1SIZ8-1|F1SIZ8_PIG Isoform 1 of Putative RNA-binding protein 15B OS=Sus scrofa OX=9823 GN=RBM15B PE=3 SV=4 CANONICAL=F1SIZ8-1" }, "locus": { "chromosome": "13", "start_pos": 33667150, "end_pos": 33664472, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012500.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012500.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012172.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012172.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 803, "start_aa": "Thr", "end_pos": 803, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr803", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519215", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519215", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A818-1", "protein_name": "Putative RNA-binding protein 15B", "gene_name": "RBM15B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKRGSERDASPPGAGGGRAAAAKRPRERERESSSRRGPHRSSGASRSSRDKSTPGGGGGGGGGGGGSGGSGGGGSGSRSHRGDERAGGADSNHRPAASGSASGARGQAAPSSSSSSSSSSRALGVPKAKALPGAVVAPSLLLAGPPPGAAPSLLLAPLGGSAGLAGEPPGSCEYKTLLVSGLSAALPDQLLEDGLFRLFQRFAGGGAGDISVKLSHTPELGRVAYVNFRHPGDARDARRHARARQLLLYDRPLKVEPVYLRGGRRSRTPPPAPSPEPLGYLPPLHGAYQYKQRSLSPVTSPLLREPRPRHAHAAAAAFALEAAAIGLSRERERALDYYGLYDERGRPYSYPIVAEEDLMPEDDQRATRNLFIGNLDHNVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVVGRNPIKIGYGKANPTTRLWVGGLGPSTSLAALAREFDRFGSIRTIDYVKGDSFAYIQYESLDAAQAACAQMRGFPLGGPERRLRVDFAKAEETRYPQQYQPAPLPVHYELLADGYSRHRSLEQDLRVRDRTPPHLLYSDRDRSFAEADWASPAKNAERRNNLEGYSRSVRSRSGERWASDSDRAVPKLWEERRKRRSLSSDRGRTAHSPYEDRSRTKASGPALDRSPERARKENHTTESGTEKEQSNSLQNNRHATEEKPHREASDAPQPKKRDSERNHRTGESESKAHEEPKSETKKLKNLSEYAQTLQLAWNGLLVLKNSCFPTSMHILEGDLGVINGLLKDHSSGGKLTQLKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLATQSAPGGAGAEGTFPVVEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGAKGRDSTGMLYAFPPCEFSQQYLQSALRTLGKLEEEHMVIVIVKDTA", "length": 915 }, "evidence": [ { "id": "F1SIZ8", "url": "https://omabrowser.org/oma/group/F1SIZ8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZHD6-1", "protein_name": "Putative RNA-binding protein 15B", "gene_name": "Rbm15b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKRQNERDSSPSGRGSSSSAKRPREREREAEAGGRRAAHKASGGTKHPVPARARDKPRGSGGGGGHRDGRAAGDANHRASSGRSSGAPGGGGRTGKASGDPGAGGASPRASPLPPPPPPPGAEPAGPGTTAAPEYKTLLISSLSPALPAEHLEDRLFHQFKRFGEISLRLSHTPELGRVAYVNFRHPQDAREARQHALARQLLLYDRPLKVEPVYLRGGGSSRRSSSSSAAASTPPPGPPTPADPLGYLPLHGGYQYKQRSLSPVAAPPLREPRARHAAAAFALDAAAAAAVGLSRERALDYYGLYDDRGRPYSYQAVCEEDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQQYQPSPLPVHYELLTDGYTRHRNLDADLRVRDRTPPHLLYSDRDRTFLEGDWTSLSKSSDRRNSLEGYSRSVRSRSGERWGADGDRSIAKPWEERRKRRSLSSDRGRTTHSPYEERSRTKGGGQQSERGSDRTPERSRKENHSSEGTKESGSNSLSNSRHSAEERSHHHHHHEAPDSSHGKKTRESERNHRTTEAEPKTLEEPKHETKKLKTLSEYAQTLQLGWNGLLVLKNSCFPTSMHILEGDQGVISGLLKDHTSGSKLTQLKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLAIQSTPSGPGAEGMPMVEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGSKGRDSTGMLYAFPPCDFSQQYLQSALRTLGKLEEEHMVIVIVRDAA", "length": 887 }, "evidence": [ { "id": "F1SIZ8", "url": "https://omabrowser.org/oma/group/F1SIZ8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F6RM04-1", "protein_name": "Putative RNA-binding protein 15B", "gene_name": "RBM15B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKRQSERDSSPSGRGSSSSAKRPREREREAEAGGRRAAHKASGGAKHPVPTRARDKPRGSGGSGGGHRDGRGAGDANHRASSGRSSGSGAGGGGRGGKASGDPGASGASPRASPLPPPPPPPGAEPTGPGSSAAAPEYKTLLISSLSPALPAEHLEDRLFHQFKRFGEISLRLSHTPELGRVAYVNFRHPQDAREARQHALARQLLLYDRPLKVEPVYLRGGGGGGGSSRRSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYKQRSLSPVAAPPLREPRARHAAAAFALDAAAAAAAVGLSRERALDYYGLYDDRGRPYGYPAVCEEDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVGMSGRVIGRNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQQYQPSPLPVHYELLPDGYTRHRNLDADLRVRDRTPPHLLYSDRERTFLEGDWTSPSKSSDRRNSLEGYSRSVRSRSGERWGGDGDRGLPKAWEDRRKRRSLSSDRGRATHSPYEERSRTKGGGQPADRGSDRTPERSRKENHSSEGTKESGSNSLSNSRHGAEERSHHHHHEAPDSSHGKKTRESERNHRTTEAEPKPLEEPKHETKKLKNLSEYAQTLQLGWNGLLVLKNSCFPTSMHILEGDQGVISSLLKDHTSGSKLTQLKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLATQATPSGPGSEGMPTVEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGSKGRDSTGMLYAFPPCDFSQQYLQSALRTLGKLEEEHMVIVIVRDTA", "length": 894 }, "evidence": [ { "id": "F1SIZ8", "url": "https://omabrowser.org/oma/group/F1SIZ8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PHZ5-1", "protein_name": "Putative RNA-binding protein 15B", "gene_name": "Rbm15b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRQSERDSSPSGRGSSSSAKRPREREREAEAGGRRAAHKASGGTKHPVPARARDKPRGSGGGGGHRDGRAAGDANHRASGGRSSGAPGGGGRTGKASGDPGAGGASPRASPLPPPPPPPGAEPAGPGSTAAPEYKTLLISSLSPALPAEHLEDRLFHQFKRFGEISLRLSHTPELGRVAYVNFRHPQDAREARQHALARQLLLYDRPLKVEPVYLRGGGSSRRSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYKQRSLSPVAAPPLREPRARHAAAAFALDAAAAAAVGLSRERALDYYGLYDDRGRPYGYQAVCEEDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQQYQPSPLPVHYELLTDGYTRHRNLDADLRVRDRTPPHLLYSDRDRTFLEGDWTSLSKSSDRRNSLEGYSRSVRSRSGERWGGDGDRSIAKPWEERRKRRSLSSDRGRTTHSPYEERSRTKGGGQQSERGSDRTPERSRKENHSSEGTKESGSNSLSNSRHGAEERSHHHHHHEAPDSSHGKKTRESERNHRTTEAEPKTLEEPKHETKKLKTLSEYAQTLQLGWNGLLVLKNSCFPTSMHILEGDQGVISGLLKDHPSGSKLTQLKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLAIQSTPSGPGAEGMPVVEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGSKGRDNTGMLYAFPPCDFSQQYLQSALRTLGKLEEEHMVIVIVRDTA", "length": 887 }, "evidence": [ { "id": "F1SIZ8", "url": "https://omabrowser.org/oma/group/F1SIZ8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NDT2-1", "protein_name": "Putative RNA-binding protein 15B", "gene_name": "RBM15B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKRQSERDSSPSGRGSSSSAKRPREREREAEAGGRRAAHKASGGAKHPVPARARDKPRGSGSGGGGHRDGRGTGDANHRASSGRSSGSGAGGGGRGGKASGDPGASGMSPRASPLPPPPPPPGAEPACPGSSAAAPEYKTLLISSLSPALPAEHLEDRLFHQFKRFGEISLRLSHTPELGRVAYVNFRHPQDAREARQHALARQLLLYDRPLKVEPVYLRGGGGSSRRSSSSSAAASTPPPGPPAPADPLGYLPLHGGYQYKQRSLSPVAAPPLREPRARHAAAAFALDAAAAAAVGLSRERALDYYGLYDDRGRPYGYPAVCEEDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGRNPIKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKAEETRYPQQYQPSPLPVHYELLTDGYTRHRNLDADLVRDRTPPHLLYSDRDRTFLEGDWTSPSKSSDRRNSLEGYSRSVRSRSGERWGADGDRGLPKPWEERRKRRSLSSDRGRTTHSPYEERSRTKGSGQQSERGSDRTPERSRKENHSSEGTKESSSNSLSNSRHGAEERGHHHHHHEAADSSHGKKARDSERNHRTTEAEPKPLEEPKHETKKLKNLSEYAQTLQLGWNGLLVLKNSCFPTSMHILEGDQGVISSLLKDHTSGSKLTQLKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLATQATPSGLGTEGMPTVEPGLQRRLLRNLVSYLKQKQAAGVISLPVGGSKGRDGTGMLYAFPPCDFSQQYLQSALRTLGKLEEEHMVIVIVRDTA", "length": 890 }, "evidence": [ { "id": "F1SIZ8", "url": "https://omabrowser.org/oma/group/F1SIZ8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "RNA N6-methyladenosine methyltransferase complex", "id": "GO:0036396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036396", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" }, { "name": "nuclear envelope", "id": "GO:0005635", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005635", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" }, { "name": "mRNA export from nucleus", "id": "GO:0006406", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006406", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" }, { "name": "dosage compensation by inactivation of X chromosome", "id": "GO:0009048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009048", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" }, { "name": "RNA methylation", "id": "GO:0001510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001510", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" }, { "name": "regulation of alternative mRNA splicing, via spliceosome", "id": "GO:0000381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000381", "evidence": [ { "database": "UniProtKB", "id": "F1SIZ8", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 643, "end_pos": 645, "annotation": "n_glycosylation_sequon" }, { "start_pos": 713, "end_pos": 715, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SIZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 139, "end_pos": 215, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SIZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SIZ8" }, { "id": "PS50917", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50917" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SPOC", "eco_id": "ECO_0000259", "start_pos": 714, "end_pos": 892, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 803 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 431, "end_pos": 433 }, { "start_pos": 643, "end_pos": 645 }, { "start_pos": 713, "end_pos": 715 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ04-1", "uniprot_ac": "F1SJ04", "uniprot_id": "F1SJ04_PIG", "mass": { "chemical_mass": 39818.0, "monoisotopic_mass": 39818.0 }, "refseq": {}, "gene_names": [ { "name": "DNAAF10", "type": "recommended", "evidence": [ { "id": "F1SJ04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ04" } ] } ], "protein_names": [ { "name": "Dynein axonemal assembly factor 10", "type": "recommended", "evidence": [ { "id": "F1SJ04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ04/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 92", "type": "synonym", "evidence": [ { "id": "F1SJ04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ04/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Key assembly factor specifically required for the stability of axonemal dynein heavy chains in cytoplasm.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ04", "url": "https://www.uniprot.org/uniprotkb/F1SJ04#function" }, { "database": "UniProtKB", "id": "ARBA00037430", "url": "https://www.uniprot.org/uniprotkb/ARBA00037430#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ04", "url": "https://www.uniprot.org/uniprotkb/F1SJ04" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNAAF10", "url": "https://www.uniprot.org/uniprotkb/F1SJ04", "locus": { "chromosome": "3", "start_pos": 74108927, "end_pos": 74085227, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008353", "url": "https://www.ensembl.org/id/ENSSSCG00000008353" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008353", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008353", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515478", "url": "https://www.ncbi.nlm.nih.gov/gene/100515478", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515478", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515478", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CLWKYNY", "url": "https://omabrowser.org/oma/group/CLWKYNY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ04", "url": "https://www.orthodb.org/?gene=F1SJ04", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10971", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10971", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJ04", "url": "https://www.uniprot.org/uniprotkb/F1SJ04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ04-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAFEKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVYSVKAHKEIINTIDGVGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGVEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCLCSSFDQMVRVLIVTKLHKI", "length": 357, "header": "tr|F1SJ04-1|F1SJ04_PIG Isoform 1 of Dynein axonemal assembly factor 10 OS=Sus scrofa OX=9823 GN=DNAAF10 PE=4 SV=3 CANONICAL=F1SJ04-1" }, "isoforms": [ { "isoform_ac": "F1SJ04-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ04/entry#F1SJ04-1", "sequence": { "sequence": "MSAFEKPQIIAHIQKSLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPDIPVYSVKAHKEIINTIDGVGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGVEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCLCSSFDQMVRVLIVTKLHKI", "length": 357, "header": "tr|F1SJ04-1|F1SJ04_PIG Isoform 1 of Dynein axonemal assembly factor 10 OS=Sus scrofa OX=9823 GN=DNAAF10 PE=4 SV=3 CANONICAL=F1SJ04-1" }, "locus": { "chromosome": "3", "start_pos": 74108067, "end_pos": 74085299, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009147.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009147.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008916.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008916.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ04", "url": "https://www.uniprot.org/uniprotkb/F1SJ04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515478", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515478", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YWG7-1", "protein_name": "Dynein axonemal assembly factor 10", "gene_name": "DNAAF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAAGLERPQVVVHAQQSLNYTVFDCKWVPRSARLLCLGSAPRGTGVLQLYELRGGRLLLLSEIEKAKPIKCATFGAASLQQRHLATGDFAGSLSIWNLEAPEIPVYSVKGHKEIINSIDGVGGLGIGEGAPEIVTGSRDGTVKVWDPRQKETPVANMEPAQGESKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRTMSLRWETNIKNGVCSVEFDRKDVNMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTIWQVRHLPQNRDVFMTSGGAGSLHLWKYEYPAQRSKKDSEGAEMGVAGSVSLLQNVTLSTQPISSLDWSPDKKGLCVCGAFDQTVRVLIVTKLNKV", "length": 359 }, "evidence": [ { "id": "F1SJ04", "url": "https://omabrowser.org/oma/group/F1SJ04/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HEG2-1", "protein_name": "Dynein axonemal assembly factor 10", "gene_name": "Wdr92", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSAFEKPQIIVHIQKGLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEKAKPIKCGTFGAASLQQRYLATGDFDGNLHIWNLEAPEMPVYSVKGHKEIINTIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPAQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVTEKAHKSTIWQVRHLPQNRELFLTAGGAGSLHLWKYEYPTHRSKKDSEGIQMGVAGSVSLLQNVTLSTQPVSSLDWSPDKRGLCICSSFDQTVRVLIVTKLQTI", "length": 357 }, "evidence": [ { "id": "F1SJ04", "url": "https://omabrowser.org/oma/group/F1SJ04/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q29RZ9-1", "protein_name": "Dynein axonemal assembly factor 10", "gene_name": "DNAAF10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSAFEKPQIISHIQKSLSYTVFDCKWMPCSAKFVTMGNFARGTGVIQLYEIQQGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFAGNLHIWNLEAPEVPVYSVKGHKEIINTIDGVGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREVFLTAGGAGSLHLWKYEYPIQRSKKDSEGVEMGVAGSVSLLQNVTLSTQPVSSLDWSPDKRGLCICSSFDQMVRVLIVTKLHKI", "length": 357 }, "evidence": [ { "id": "F1SJ04", "url": "https://omabrowser.org/oma/group/F1SJ04/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54E33-1", "protein_name": "Dynein axonemal assembly factor 10", "gene_name": "dnaaf10", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSALGESNNKQNGKEILHNYVTKKLTSQPYSCQWIPTSCSVVTVGKKTSGGISKGDIKIHQLEFDDTSGDPKLNLVYENEFTNPFRCLSFFKQANQLQQQDNRKFITGDFNGQISEWDSDICDIPIWGVKGAHQGSISAIDAYADNLVVCGGKDGTIKVYDTRIKPNSANDNNGNNSSPISTFEQTNKSNCWSICTNDNNIIAGFENGDLNIYNLKTNSIQSTTKLNGGICSIDSNDRSNILNQFLITTNKSFISIASFNNNNNNNIEFKDYDINKEPNQTIWSGIYSPWNKKDNENIFTIAQGDGSVSMYRDDCKLIDKVLVSDLPILSLDYSKDRKGLLCCISLKKQLSILISPC", "length": 357 }, "evidence": [ { "id": "F1SJ04", "url": "https://omabrowser.org/oma/group/F1SJ04/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561Y0-1", "protein_name": "Dynein axonemal assembly factor 10", "gene_name": "dnaaf10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSAALEKPQIIAHIQKSLNYTVFESKWIPCSAKFVCMGNFARGTGVMQIYEIQHGELQLVREIEKSKPIKCGTFGATSLQQRHLATGDFDGNLNVWNLEVPDSPVYSVKAHKEIINAIDGVGGLGIGDGAPEIVTGSRDGTVKVWDSRQKDTPVVNMEPTEGETKRDCWTVAFGHAFNDQDRCVCAGYDNGDIKLFDLRNMSLRWEKNIRNGVCSVEFDRKDINMNKLVATSLEGKFHVFDMRTQHPSKGFASVSEKAHKSTIWQVRHLPQNRDVFMTAGGAGNLHLWKYEYPAQRSKKGADDVEMGVAGSVNLLQNVTLSTQPISSLDWSPDKQGLCVCSSFDQSVRVLIVTKLNTV", "length": 358 }, "evidence": [ { "id": "F1SJ04", "url": "https://omabrowser.org/oma/group/F1SJ04/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BGF3-1", "protein_name": "Dynein axonemal assembly factor 10", "gene_name": "Dnaaf10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTFEKPQIIVHIQKGLNYTVFDSKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEKAKPIKCGTFGAASLQQRFLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINTIDGVGGLGIGEGAPEIVTGSRDGTVKVWDPRQKEDPVANMEPAQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVTEKAHKSTVWQVRHLPQNREIFLTTGGAGSLHLWKYEYPTQRSKKDSEGLEMGVAGSVSLLQNVTVSTQPISSLDWSPDKRGLCVCSSFDQMVRVLIVTKLQTI", "length": 357 }, "evidence": [ { "id": "F1SJ04", "url": "https://omabrowser.org/oma/group/F1SJ04/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96MX6-1", "protein_name": "Dynein axonemal assembly factor 10", "gene_name": "DNAAF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAFEKPQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNKI", "length": 357 }, "evidence": [ { "id": "F1SJ04", "url": "https://omabrowser.org/oma/group/F1SJ04/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VVM7-1", "protein_name": "WD repeat domain 92", "gene_name": "Wdr92", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDKPQLIEHLHEALNYTVYDTKWVPLSAKFVILGSKANGHGIMDIYELNQDKLVKVKSVEKKVAFKCGTFGAASLRNRHMAIGDFEGRLQVLDMEQPDLPVYNVKAHNGIINTIDAIGGTQIDCGAPEIVTGSRDGAVKVWDIRQGQAPVVDMSPPPQMGDGVNNSSGRRDCWAVAFGNTYNAEERIVAAGYDNGDLKIFDLRSLSVRWEATMKNGICGLEFDRRDIPMNKLAVTTLEGGLLVFDMRTQHPTKGFSYVEERNAGRSVGTNGVISGPKATVWVVRHLPQNRDLFLTGGGTGSIRLWQYEYPDRRVIDDSDGNKLGVAGALNMLSAATLSSQPVHCFDWHPDKLGLAVCGAFDQSVRVLITTKLNTF", "length": 375 }, "evidence": [ { "id": "F1SJ04", "url": "https://omabrowser.org/oma/group/F1SJ04/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1SJ04", "url": "https://www.uniprot.org/uniprotkb/F1SJ04" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin binding", "id": "GO:0043130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043130", "evidence": [ { "database": "UniProtKB", "id": "F1SJ04", "url": "https://www.uniprot.org/uniprotkb/F1SJ04" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "dynein axonemal particle", "id": "GO:0120293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120293", "evidence": [ { "database": "UniProtKB", "id": "F1SJ04", "url": "https://www.uniprot.org/uniprotkb/F1SJ04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 199, "end_pos": 201 }, { "start_pos": 316, "end_pos": 318 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ08-1", "uniprot_ac": "F1SJ08", "uniprot_id": "F1SJ08_PIG", "mass": { "chemical_mass": 17895.0, "monoisotopic_mass": 17895.0 }, "refseq": { "ac": "XP_020943079", "name": "F-box only protein 48", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943079" }, "gene_names": [ { "name": "FBXO48", "type": "recommended", "evidence": [ { "id": "F1SJ08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ08" } ] }, { "name": "FBXO48", "type": "synonym", "evidence": [ { "id": "XP_020943079", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943079" } ] } ], "protein_names": [ { "name": "F-box only protein", "type": "recommended", "evidence": [ { "id": "F1SJ08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ08/entry#names_and_taxonomy" } ] }, { "name": "F-box only protein 48", "type": "synonym", "evidence": [ { "id": "XP_020943079", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943079" } ] } ], "function": [ { "annotation": "Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins and plays a role in several biological processes such as cell cycle, cell proliferation, or maintenance of chromosome stability. Ubiquitinates mTORC1-bound TTI1 and TELO2 when they are phosphorylated by CK2 following growth factor deprivation, leading to their degradation. In contrast, does not mediate ubiquitination of TTI1 and TELO2 when they are part of the mTORC2 complex. As a consequence, mTORC1 is inactivated to restrain cell growth and protein translation, while mTORC2 is the activated due to the relief of feedback inhibition by mTORC1. Plays a role in maintaining epithelial cell survival by regulating the turn-over of chromatin modulator PRMT4 through ubiquitination and degradation by the proteasomal pathway. Regulates also PPARgamma stability by facilitating PPARgamma/PPARG ubiquitination and thereby plays a role in adipocyte differentiation.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ08", "url": "https://www.uniprot.org/uniprotkb/F1SJ08#function" }, { "database": "UniProtKB", "id": "RU369085", "url": "https://www.uniprot.org/uniprotkb/RU369085#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ08", "url": "https://www.uniprot.org/uniprotkb/F1SJ08" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXO48", "url": "https://www.uniprot.org/uniprotkb/F1SJ08", "locus": { "chromosome": "3", "start_pos": 73838553, "end_pos": 73831336, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008347", "url": "https://www.ensembl.org/id/ENSSSCG00000008347" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008347", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008347", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22113", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22113", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106509795", "url": "https://www.ncbi.nlm.nih.gov/gene/106509795", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106509795", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106509795", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IMCPMDA", "url": "https://omabrowser.org/oma/group/IMCPMDA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ08", "url": "https://www.orthodb.org/?gene=F1SJ08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12874", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12874", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12874:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12874:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020943079", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943079", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ08", "url": "https://www.uniprot.org/uniprotkb/F1SJ08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ08-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKNSQRNHHSRELSSEDAEKEKKENQNNFVELLPPEVTFKIFSQLDIRSLCRASMTCRSWNQTIRHSDSLWKPHCLTVRAVCQREIDDDLESGYPWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPEKIMYPMDADTWGEILEAELER", "length": 151, "header": "tr|F1SJ08-1|F1SJ08_PIG Isoform 1 of F-box only protein OS=Sus scrofa OX=9823 GN=FBXO48 PE=4 SV=2 CANONICAL=F1SJ08-1" }, "isoforms": [ { "isoform_ac": "F1SJ08-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ08/entry#F1SJ08-1", "sequence": { "sequence": "MKKNSQRNHHSRELSSEDAEKEKKENQNNFVELLPPEVTFKIFSQLDIRSLCRASMTCRSWNQTIRHSDSLWKPHCLTVRAVCQREIDDDLESGYPWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPEKIMYPMDADTWGEILEAELER", "length": 151, "header": "tr|F1SJ08-1|F1SJ08_PIG Isoform 1 of F-box only protein OS=Sus scrofa OX=9823 GN=FBXO48 PE=4 SV=2 CANONICAL=F1SJ08-1" }, "locus": { "chromosome": "3", "start_pos": 73836787, "end_pos": 73835902, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009141.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009141.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008910.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008910.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ08", "url": "https://www.uniprot.org/uniprotkb/F1SJ08" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106509795", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106509795", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C0I6-1", "protein_name": "F-box protein 48", "gene_name": "FBXO48", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMQKTPKRNKQPLTAGEPALLPPDKRRKGAPADFVALLPPEVSVQIFSSLDLRSLCSAAMTCRRWRLAIDGNDWLWRNHCLTVRAVCQREIDGDRGSGYSWKITLLRNYWKSKVKQEWLSGKYSNVHSQNNLPEKSMYPMDVDTWGEILEAELER", "length": 155 }, "evidence": [ { "id": "F1SJ08", "url": "https://omabrowser.org/oma/group/F1SJ08/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3N250-1", "protein_name": "F-box only protein", "gene_name": "FBXO48", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKKNSKRNHASRVSDIEWNSVDAEREKKECPNNFVELLPPEVTFKIFSQLDIRSLCRASVTCRSWNHAIRHSDSLWKPHCLTVRAVCQREIDDDLESGYPWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPEKIMYPMDADTWGEILEAELER", "length": 155 }, "evidence": [ { "id": "F1SJ08", "url": "https://omabrowser.org/oma/group/F1SJ08/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5FWF7-1", "protein_name": "F-box only protein 48", "gene_name": "FBXO48", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHKNSKRNNNLRVSHTEANSVDAEKEKNESQNNFFELLPAEITFKIFSQLDIRSLCRASLTCRSWNDTIRNSDSLWKPHCMTVRAVCRREIDDDLESGYSWRVILLRNYQKSKVKHEWLSGRYSNICSPISLPEKIMYPMDADTWGEILEAELER", "length": 155 }, "evidence": [ { "id": "F1SJ08", "url": "https://omabrowser.org/oma/group/F1SJ08/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CAT8-1", "protein_name": "F-box only protein 48", "gene_name": "Fbxo48", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKTSKKNNNFKIPGTELNSADAERGKEESQRNFVELLPLEVTYKIFSQLDIQSLCRASRTCTGWNCAIRNNDSLWKPHCLTIRAVCQREIDDDIKSGYTWRVILLRNYQKSKVKYEWLSGRYSNIRSPVNLPEKAMCPMDADTWGEILDAELEREVEKLQ", "length": 161 }, "evidence": [ { "id": "F1SJ08", "url": "https://omabrowser.org/oma/group/F1SJ08/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "R4GEA9-1", "protein_name": "F-box only protein 48 isoform a", "gene_name": "fbxo48", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVEGAAAPSAGQKLTRWCCSGLQDPLQIERDFSEALPAEMSVRIFGELDVRSLCRASVTCKHWNDIIEGSDHLWRSHCLTGLAVCRREVNGDRLDGCSWKVTLVRNYRKGCVKRRWLKGRYSNIRSADELPANSMCPLDVETWGEILEAELER", "length": 154 }, "evidence": [ { "id": "F1SJ08", "url": "https://omabrowser.org/oma/group/F1SJ08/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJ08", "url": "https://www.uniprot.org/uniprotkb/F1SJ08" } ], "pmid": "" }, { "name": "SCF ubiquitin ligase complex", "id": "GO:0019005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019005", "evidence": [ { "database": "UniProtKB", "id": "F1SJ08", "url": "https://www.uniprot.org/uniprotkb/F1SJ08" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SJ08", "url": "https://www.uniprot.org/uniprotkb/F1SJ08" } ], "pmid": "" }, { "name": "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0031146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031146", "evidence": [ { "database": "UniProtKB", "id": "F1SJ08", "url": "https://www.uniprot.org/uniprotkb/F1SJ08" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "F1SJ08", "url": "https://www.uniprot.org/uniprotkb/F1SJ08" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 62, "end_pos": 64, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ08" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 75, "start_aa": "Asn", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 62, "end_pos": 64 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ21-1", "uniprot_ac": "F1SJ21", "uniprot_id": "F1SJ21_PIG", "mass": { "chemical_mass": 24125.0, "monoisotopic_mass": 24125.0 }, "refseq": {}, "gene_names": [ { "name": "CYB561D2", "type": "recommended", "evidence": [ { "id": "F1SJ21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ] } ], "protein_names": [ { "name": "Transmembrane reductase CYB561D2", "type": "recommended", "evidence": [ { "id": "F1SJ21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ21/entry#names_and_taxonomy" } ] }, { "name": "7.2.1.3", "type": "synonym", "evidence": [ { "id": "F1SJ21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ21/entry#names_and_taxonomy" } ] }, { "name": "Cytochrome b561 domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "F1SJ21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ21/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transmembrane reductase that may use ascorbate as an electron donor in the cytoplasm and transfer electrons across endoplasmic reticulum membranes to reduce monodehydro-L-ascorbate radical and iron cations Fe(3+) in the lumen of that compartment.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21#function" }, { "database": "UniProtKB", "id": "ARBA00056397", "url": "https://www.uniprot.org/uniprotkb/ARBA00056397#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CYB561D2", "url": "https://www.uniprot.org/uniprotkb/F1SJ21", "locus": { "chromosome": "13", "start_pos": 32837002, "end_pos": 32834239, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011410", "url": "https://www.ensembl.org/id/ENSSSCG00000011410" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011410", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011410", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08761", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08761", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR006593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517372", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517372", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IFYNKHL", "url": "https://omabrowser.org/oma/group/IFYNKHL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ21", "url": "https://www.orthodb.org/?gene=F1SJ21", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15422", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15422", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15422:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15422:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "30403", "url": "https://www.rhea-db.org/rhea/30403", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "66524", "url": "https://www.rhea-db.org/rhea/66524", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ21-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ21-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALSVETESHIYRTLRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMCLAFSFLMTEALLVFSPESSLLRSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLATWHGRAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMCSLWFTATVTGGVWYLAVLCPVITSLVIMNQVSNAYLYRKRIQP", "length": 222, "header": "tr|F1SJ21-1|F1SJ21_PIG Isoform 1 of Transmembrane reductase CYB561D2 OS=Sus scrofa OX=9823 GN=CYB561D2 PE=1 SV=4 CANONICAL=F1SJ21-1" }, "isoforms": [ { "isoform_ac": "F1SJ21-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ21/entry#F1SJ21-1", "sequence": { "sequence": "MALSVETESHIYRTLRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMCLAFSFLMTEALLVFSPESSLLRSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLATWHGRAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMCSLWFTATVTGGVWYLAVLCPVITSLVIMNQVSNAYLYRKRIQP", "length": 222, "header": "tr|F1SJ21-1|F1SJ21_PIG Isoform 1 of Transmembrane reductase CYB561D2 OS=Sus scrofa OX=9823 GN=CYB561D2 PE=1 SV=4 CANONICAL=F1SJ21-1" }, "locus": { "chromosome": "13", "start_pos": 32836630, "end_pos": 32834842, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012490.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012490.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012164.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012164.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517372", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517372", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7JQL6-1", "protein_name": "Transmembrane reductase CYB561D2", "gene_name": "LOC100751550", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTCCILGFVVVRVLTHPTWKVRSVPLQIKAVQLSAGLTMALSVETESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLATRHGQAGLLAVLWAGLQCSGGLGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMCSLWFTAAVTGGAWYLAVLCPVLTSLVIMNQVSNAYLYRKRIQP", "length": 260 }, "evidence": [ { "id": "F1SJ21", "url": "https://omabrowser.org/oma/group/F1SJ21/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O14569-1", "protein_name": "Transmembrane reductase CYB561D2", "gene_name": "CYB561D2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALSAETESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLVTRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMCSLWFTASVTGAAWYLAVLCPVLTSLVIMNQVSNAYLYRKRIQP", "length": 222 }, "evidence": [ { "id": "F1SJ21", "url": "https://omabrowser.org/oma/group/F1SJ21/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5E965-1", "protein_name": "Transmembrane reductase CYB561D2", "gene_name": "CYB561D2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALSVETESHIYRALRTVSGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVFSPESSLLRSLSRKGRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLATWHGRAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGGASLLLGMCSLWFTATVTGGVWYLAVLCPVITSLVIMNQVSNAYLYRKRIQP", "length": 222 }, "evidence": [ { "id": "F1SJ21", "url": "https://omabrowser.org/oma/group/F1SJ21/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q641Y1-1", "protein_name": "Transmembrane reductase CYB561D2", "gene_name": "Cyb561d2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALSVETESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLATRHGQAGLLAVLWAGLQCSGGVGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSTSLLLGMCSLWFTANVTGGAWYLAVLCPILTSLVIMNQVSNAYLYRKRIQP", "length": 222 }, "evidence": [ { "id": "F1SJ21", "url": "https://omabrowser.org/oma/group/F1SJ21/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9VIU6-1", "protein_name": "ascorbate ferrireductase (transmembrane)", "gene_name": "Dmel\\CG10165", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAEGYTKATAWLQIHSLLNSINHILIFLVAVFFFILARSLEFKDTAMHMFMTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHAILQIVGGSMVLLGSLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKVMPPSELRFRHNLFGLVTFSLGMGAIYLGYYSKFFTKYVDTDFIPGMMLITGIVYGLTIIAPVSSLLTKLKYRSKKKAEQAQ", "length": 228 }, "evidence": [ { "id": "F1SJ21", "url": "https://omabrowser.org/oma/group/F1SJ21/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9WUE3-1", "protein_name": "Transmembrane reductase CYB561D2", "gene_name": "Cyb561d2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALSVETESHIYRALRTASGAAAHLVALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLMFSPESSLLRSLSRKVRARCHWVLQLLALLCALLGLGLVILHKEQLGKAHLTTRHGQAGLLAVLWAGLQCSGGMGLLYPKLLPRWPLAKLKLYHATSGLVGYLLGSASLLLGMFSLWFTATVTGGAWYLAVLCPILTSLVIMNQVSNAYLYRKRIQP", "length": 222 }, "evidence": [ { "id": "F1SJ21", "url": "https://omabrowser.org/oma/group/F1SJ21/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ], "pmid": "" }, { "name": "transmembrane monodehydroascorbate reductase activity", "id": "GO:0140575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140575", "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ], "pmid": "" }, { "name": "transmembrane ascorbate ferrireductase activity", "id": "GO:0140571", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140571", "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ascorbate homeostasis", "id": "GO:0140576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140576", "evidence": [ { "database": "UniProtKB", "id": "F1SJ21", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "30403", "name": "", "equation": "Fe(3+)(out) + L-ascorbate(in) = monodehydro-L-ascorbate radical(in) + Fe(2+)(out) + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "30403", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/30403" } ] }, { "id": "66524", "name": "", "equation": "monodehydro-L-ascorbate radical(out) + L-ascorbate(in) = monodehydro-L-ascorbate radical(in) + L-ascorbate(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "66524", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/66524" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ21", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ21" }, { "id": "PS50939", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50939" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cytochrome b561", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 217, "start_aa": "Thr", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ28-1", "uniprot_ac": "F1SJ28", "uniprot_id": "F1SJ28_PIG", "mass": { "chemical_mass": 55554.0, "monoisotopic_mass": 55554.0 }, "refseq": { "ac": "XP_001925484", "name": "protein ERGIC-53-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925484" }, "gene_names": [ { "name": "LMAN1L", "type": "recommended", "evidence": [ { "id": "F1SJ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ] }, { "name": "LMAN1L", "type": "synonym", "evidence": [ { "id": "XP_001925484", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925484" } ] } ], "protein_names": [ { "name": "Lectin, mannose binding 1 like", "type": "synonym", "evidence": [ { "id": "F1SJ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ28/entry#names_and_taxonomy" } ] }, { "name": "protein ERGIC-53-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001925484", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925484" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LMAN1L", "url": "https://www.uniprot.org/uniprotkb/F1SJ28", "locus": { "chromosome": "7", "start_pos": 58717821, "end_pos": 58730172, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001899", "url": "https://www.ensembl.org/id/ENSSSCG00000001899" } ] } } ], "crossref": [ { "id": "F1SJ28", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ28", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001899", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001899", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100158128", "url": "https://www.ncbi.nlm.nih.gov/gene/100158128", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158128", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158128", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IRPEGGW", "url": "https://omabrowser.org/oma/group/IRPEGGW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ28", "url": "https://www.orthodb.org/?gene=F1SJ28", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12223", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12223", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12223:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12223:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03388", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03388", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5694530", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925484", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925484", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ28-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLVVHGLDPLLSLLLILLLDPHSPEGGHPPQRRFEYKLSFKGPRLALPGAGIPFWSHHGDAILGLEEVRLAPSMRNRSGAVWSRTPVLFPAWEVEVQMRVTGPGRLGAQGMAVWYTRGRGQVSSVLGALDSGDSIGILFDSSAEDTQKSPAIRVLVGNGHNPDEPLGDGASRVLGSCHRAFRNRPNPFRARITYWRQRLRLSLNSGLTPSDPDELCVDVGPLLLAPGGFFGVLAATSTLADDHDVLSFLTFSLSEPGPEPPPQPFLEMEQLRLARQLEGLRARLALGTKEDTILKPNSKVQEEGERIFDLEETLDRYSQILQALQGLSKQLAQAERQWKKELGSTDCARPESTWDSAKVSALLRGQLTLLQDLQEMRDAAAHMASRAQVFYLPVGTKHHFLELAQILSLLQKDLRGPAKAAAKDPRPPGWPPGIFSCLRPGIFLFFLLVQTVGFFCYVHFSKQELDKNLQDYLSTGSLPLSPAPQISRALGALRRQPLYPNIHA", "length": 504, "header": "tr|F1SJ28-1|F1SJ28_PIG Isoform 1 of Lectin, mannose binding 1 like OS=Sus scrofa OX=9823 GN=LMAN1L PE=4 SV=1 CANONICAL=F1SJ28-1" }, "isoforms": [ { "isoform_ac": "F1SJ28-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ28/entry#F1SJ28-1", "sequence": { "sequence": "MLVVHGLDPLLSLLLILLLDPHSPEGGHPPQRRFEYKLSFKGPRLALPGAGIPFWSHHGDAILGLEEVRLAPSMRNRSGAVWSRTPVLFPAWEVEVQMRVTGPGRLGAQGMAVWYTRGRGQVSSVLGALDSGDSIGILFDSSAEDTQKSPAIRVLVGNGHNPDEPLGDGASRVLGSCHRAFRNRPNPFRARITYWRQRLRLSLNSGLTPSDPDELCVDVGPLLLAPGGFFGVLAATSTLADDHDVLSFLTFSLSEPGPEPPPQPFLEMEQLRLARQLEGLRARLALGTKEDTILKPNSKVQEEGERIFDLEETLDRYSQILQALQGLSKQLAQAERQWKKELGSTDCARPESTWDSAKVSALLRGQLTLLQDLQEMRDAAAHMASRAQVFYLPVGTKHHFLELAQILSLLQKDLRGPAKAAAKDPRPPGWPPGIFSCLRPGIFLFFLLVQTVGFFCYVHFSKQELDKNLQDYLSTGSLPLSPAPQISRALGALRRQPLYPNIHA", "length": 504, "header": "tr|F1SJ28-1|F1SJ28_PIG Isoform 1 of Lectin, mannose binding 1 like OS=Sus scrofa OX=9823 GN=LMAN1L PE=4 SV=1 CANONICAL=F1SJ28-1" }, "locus": { "chromosome": "7", "start_pos": 58730162, "end_pos": 58717992, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002127.3", "url": "https://www.ensembl.org/id/ENSSSCT00000002127.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002077.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002077.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158128", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158128", "resource": "KEGG Pathway" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" }, { "id": "R-SSC-5694530", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "resource": "Reactome", "description": "Cargo concentration in the ER" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5FB95-1", "protein_name": "Protein ERGIC-53-like", "gene_name": "Lman1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKTGGLSPSLCLLSLLLALHSAERSYPPPQRRFEYKLSFKGPRLAVPGAGIPFWSHHGDAIPGLEEVRLVPSMKNRSGAVWSEISVSFPSWEVEMQMRVTGPGRRGALGVAMWYTKDRDQVGSVVEGLASWDGIGIYFDSSSNDVQNGPAIRVLASDGHDLQEQFGDGTVRELGSCLRDFRNRPHPFRARITYWRQRLRVSLSGGLTPNDPEEVCVDVEPLLLAPGGFFGVSAATSTLADDHDVLSFLTFSLRDPGSEEALQPFTEKEQFHLARKLEELKARLALGTREDTILPLNSKAQEEGERFFNLEDTLSRQSQILQALQALSRQMDQAEKQWKQQLGSVVQIRPEGGWNTAKVSTLLYGQRTLIQALQEMREAAAQMASGAQVFYLPVGTKHHFFELDQTLGLLQKDLRDLVKMTAKPPRPSGWLPGFSTCLRTSIFLFFLLIQTVGFFCYMNFRQELDKRLQEYLFTESISLQPALPIPRTIGVLRRQPVSPSMQA", "length": 503 }, "evidence": [ { "id": "F1SJ28", "url": "https://omabrowser.org/oma/group/F1SJ28/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VCD3-1", "protein_name": "Protein ERGIC-53-like", "gene_name": "Lman1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLEIRGLSPSLCLLSLLLVLHGAERSQPPPRRRFEYKLSFKGPRLAVPGAGIPFWSHHGDAILGLEEVRLVPSMKNRSGAVWSNISVSFPSWEVEMQMRVTGPGRRGAQGVAMWYTKDRAQVGSVVEELASWDGIGIYFDSSTSDVQDSPVIRVLASDGHDLQEQSGDGNVRELGSCHRDFRNRPFPFRARVTYWRQRLRVSLSGGLTPKDPEEVCVDVEPLFLAPGGFFGVSAATGTLAADDHDVLSFLTFSLREPGPEETPQPFMEKDQLLLARKLEELKARLALGTREASIPPLNPKAQEEGERFFNLEDTLGRQSQILQALQALSRQMAQAEKHWKQQLGSTVQVRPEGGWNTAKVSTLLYGQRTLIQALQEMREAAARMASGAHVFYLPVGTKHHFFELDHILSLLQKDLRGLVKKTAKAPRPSGWLLGSSTCLHTSIFLFFLLLQTVGFFCYVNFSRQELDKRLQEYLSTGSLSLEPALPITRTIGVLRRQPISPSMQA", "length": 505 }, "evidence": [ { "id": "F1SJ28", "url": "https://omabrowser.org/oma/group/F1SJ28/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HAT1-1", "protein_name": "Protein ERGIC-53-like", "gene_name": "LMAN1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPAVSGPGPLFCLLLLLLDPHSPETGCPPLRRFEYKLSFKGPRLALPGAGIPFWSHHGDAILGLEEVRLTPSMRNRSGAVWSRASVPFSAWEVEVQMRVTGLGRRGAQGMAVWYTRGRGHVGSVLGGLASWDGIGIFFDSPAEDTQDSPAIRVLASDGHIPSEQPGDGASQGLGSCHWDFRNRPHPFRARITYWGQRLRMSLNSGLTPSDPGEFCVDVGPLLLVPGGFFGVSAATGTLADDHDVLSFLTFSLSEPSPEVPPQPFLEMQQLRLARQLEGLWARLGLGTREDVTPKSDSEAQGEGERLFDLEETLGRHRRILQALRGLSKQLAQAERQWKKQLGPPGQARPDGGWALDASCQIPSTPGRGGHLSMSLNKDSAKVGALLHGQWTLLQALQEMRDAAVRMAAEAQVSYLPVGIEHHFLELDHILGLLQEELRGPAKAAAKAPRPPGQPPRASSCLQPGIFLFYLLIQTVGFFGYVHFRQELNKSLQECLSTGSLPLGPAPHTPRALGILRRQPLPASMPA", "length": 526 }, "evidence": [ { "id": "F1SJ28", "url": "https://omabrowser.org/oma/group/F1SJ28/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ], "pmid": "" }, { "name": "COPII-coated ER to Golgi transport vesicle", "id": "GO:0030134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030134", "evidence": [ { "database": "UniProtKB", "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment membrane", "id": "GO:0033116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033116", "evidence": [ { "database": "UniProtKB", "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "D-mannose binding", "id": "GO:0005537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005537", "evidence": [ { "database": "UniProtKB", "id": "F1SJ28", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ28-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 504, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ28-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ28" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ28" }, { "id": "PS51328", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51328" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L-type lectin-like", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 253, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ44-1", "uniprot_ac": "F1SJ44", "uniprot_id": "F1SJ44_PIG", "mass": { "chemical_mass": 34509.0, "monoisotopic_mass": 34509.0 }, "refseq": { "ac": "XP_020936960", "name": "olfactory receptor 4S1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936960" }, "gene_names": [ { "name": "LOC110255252", "type": "recommended", "evidence": [ { "id": "F1SJ44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ44" } ] }, { "name": "LOC110255252", "type": "synonym", "evidence": [ { "id": "XP_020936960", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936960" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJ44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ44/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 4S1", "type": "synonym", "evidence": [ { "id": "XP_020936960", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936960" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ44", "url": "https://www.uniprot.org/uniprotkb/F1SJ44#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ44", "url": "https://www.uniprot.org/uniprotkb/F1SJ44" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110255252", "url": "https://www.uniprot.org/uniprotkb/F1SJ44", "locus": {} } ], "crossref": [ { "id": "F1SJ44", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ44", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037503", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037503", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15939", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15939", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110255252", "url": "https://www.ncbi.nlm.nih.gov/gene/110255252", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255252", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255252", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GICHNEM", "url": "https://omabrowser.org/oma/group/GICHNEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ44", "url": "https://www.orthodb.org/?gene=F1SJ44", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936960", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936960", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ44", "url": "https://www.uniprot.org/uniprotkb/F1SJ44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ44-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ44-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTKSNVTEFVLFGLFQSREMQHVCFVVFSLIHVLTVLGNLLVIITINASKTLKAPMYFFLSHLSFADMCYPSATTPKMIADTFVERKTISFNGCMSQLFSAHFFGGTEIFLLTAMAYDRYVAICRPLHYTTIMDRWKCGLLAGASWVAGFLHSILQTLLTVQLPFCGPNEIDNFFCDVHPLLKLACADTYVVGLIVVANSGMISLVSFIVLIISYVVILLNLRSRSSESRHKALSTCGSHIITVLLVLVPPMFMYIRPSTTLAADKLVILFNIVMPPLLNPLIYTLRNNEVKNAMRKLFRVKGSLGEK", "length": 309, "header": "tr|F1SJ44-1|F1SJ44_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110255252 PE=3 SV=2 CANONICAL=F1SJ44-1" }, "isoforms": [ { "isoform_ac": "F1SJ44-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ44/entry#F1SJ44-1", "sequence": { "sequence": "MGTKSNVTEFVLFGLFQSREMQHVCFVVFSLIHVLTVLGNLLVIITINASKTLKAPMYFFLSHLSFADMCYPSATTPKMIADTFVERKTISFNGCMSQLFSAHFFGGTEIFLLTAMAYDRYVAICRPLHYTTIMDRWKCGLLAGASWVAGFLHSILQTLLTVQLPFCGPNEIDNFFCDVHPLLKLACADTYVVGLIVVANSGMISLVSFIVLIISYVVILLNLRSRSSESRHKALSTCGSHIITVLLVLVPPMFMYIRPSTTLAADKLVILFNIVMPPLLNPLIYTLRNNEVKNAMRKLFRVKGSLGEK", "length": 309, "header": "tr|F1SJ44-1|F1SJ44_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110255252 PE=3 SV=2 CANONICAL=F1SJ44-1" }, "locus": { "chromosome": "AEMK02000159.1", "start_pos": 293941, "end_pos": 293015, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014432.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014432.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014040.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014040.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ44", "url": "https://www.uniprot.org/uniprotkb/F1SJ44" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255252", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255252", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJ44", "url": "https://www.uniprot.org/uniprotkb/F1SJ44" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJ44", "url": "https://www.uniprot.org/uniprotkb/F1SJ44" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ44", "url": "https://www.uniprot.org/uniprotkb/F1SJ44" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ44-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 309, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ44-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ44" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ44", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ44" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 285, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 48, "end_pos": 50 }, { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ50-1", "uniprot_ac": "F1SJ50", "uniprot_id": "F1SJ50_PIG", "mass": { "chemical_mass": 22666.0, "monoisotopic_mass": 22666.0 }, "refseq": { "ac": "XP_001927152", "name": "ribonuclease P protein subunit p25", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927152" }, "gene_names": [ { "name": "RPP25", "type": "recommended", "evidence": [ { "id": "F1SJ50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ] }, { "name": "RPP25", "type": "synonym", "evidence": [ { "id": "XP_001927152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927152" } ] } ], "protein_names": [ { "name": "Ribonuclease P protein subunit p25", "type": "recommended", "evidence": [ { "id": "F1SJ50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ50/entry#names_and_taxonomy" } ] }, { "name": "ribonuclease P protein subunit p25", "type": "synonym", "evidence": [ { "id": "XP_001927152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927152" } ] } ], "function": [ { "annotation": "Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50#function" }, { "database": "UniProtKB", "id": "ARBA00053284", "url": "https://www.uniprot.org/uniprotkb/ARBA00053284#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPP25", "url": "https://www.uniprot.org/uniprotkb/F1SJ50", "locus": { "chromosome": "7", "start_pos": 58610078, "end_pos": 58608543, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001888", "url": "https://www.ensembl.org/id/ENSSSCG00000001888" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001888", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001888", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157338", "url": "https://www.ncbi.nlm.nih.gov/gene/100157338", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036882", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036882", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157338", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157338", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WENKDPQ", "url": "https://omabrowser.org/oma/group/WENKDPQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ50", "url": "https://www.orthodb.org/?gene=F1SJ50", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13516", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13516", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13516:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13516:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01918", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01918", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927152", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927152", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ50-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ50-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKPPSPRSRQLRRMENFRKVRSEEAPVGNGEEGGGPGSGPFGDLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLVGLHQVTRLRYRSVREVWQSLPPEPTPDQKPDEPAASLTVLKNVPSLAILLSKDALDPRQPGYQPPSPHPGPSSQPTAPTSKRSLGEPAAGEGSAKRSQPEPGAAEEDQTA", "length": 213, "header": "tr|F1SJ50-1|F1SJ50_PIG Isoform 1 of Ribonuclease P protein subunit p25 OS=Sus scrofa OX=9823 GN=RPP25 PE=3 SV=2 CANONICAL=F1SJ50-1" }, "isoforms": [ { "isoform_ac": "F1SJ50-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ50/entry#F1SJ50-1", "sequence": { "sequence": "MAKPPSPRSRQLRRMENFRKVRSEEAPVGNGEEGGGPGSGPFGDLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLVGLHQVTRLRYRSVREVWQSLPPEPTPDQKPDEPAASLTVLKNVPSLAILLSKDALDPRQPGYQPPSPHPGPSSQPTAPTSKRSLGEPAAGEGSAKRSQPEPGAAEEDQTA", "length": 213, "header": "tr|F1SJ50-1|F1SJ50_PIG Isoform 1 of Ribonuclease P protein subunit p25 OS=Sus scrofa OX=9823 GN=RPP25 PE=3 SV=2 CANONICAL=F1SJ50-1" }, "locus": { "chromosome": "7", "start_pos": 58609405, "end_pos": 58608767, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002114.3", "url": "https://www.ensembl.org/id/ENSSSCT00000002114.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002064.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002064.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 128, "start_aa": "Thr", "end_pos": 128, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr128", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157338", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157338", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U162-1", "protein_name": "Ribonuclease P and MRP subunit p25", "gene_name": "RPP25", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTSKPIAQSGMENFRKVRTSEEESPLPFPNLPPGVVEMKVKEGSKIRNLMSFAMAQMELKGSRQIVFSGCGRAVTKTITCVEIMKRKLGGLHQVTKVRYKTLLEVWENQDPLPGGAAQNLTVHKNVPSICILLSRDPLDPNQTGYQPPEPREVGEDASSSSAKGLKRPPPPAREELLPKKLQVAGASSPQGSGTRDSQTDGHY", "length": 203 }, "evidence": [ { "id": "F1SJ50", "url": "https://omabrowser.org/oma/group/F1SJ50/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3I832-1", "protein_name": "Ribonuclease P protein subunit p25", "gene_name": "Rpp25", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MENFRKVRSEEAPAGDGDEGGSLNSGPFADLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCVEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTRGQTPDDPAASLSVLKNVPSLAILLSKDALDPLQLGYQPPNLNPGPSSTPTVSTSKRSLGESAAGESTAKRSQPEPGAENEDSTA", "length": 199 }, "evidence": [ { "id": "F1SJ50", "url": "https://omabrowser.org/oma/group/F1SJ50/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q0E9N4-1", "protein_name": "Ribonuclease P/MRP subunit p25, isoform C", "gene_name": "Rpp25", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MMHYRKAENVEKELSKSDLPFEDCMPKSQKDFLWMHVKGGTKVSNVIEFAQEALNKGEHRCVVWSGSGGGVVKTISCAEVLKRSHPLYQVTRMAYTSVEEHWKPQMEGLEEIIVTRQIPTLHILMSLDELPDTIDGLQKPNTSTDFWDGGGAQQQPHPRSQPRHQQQPHKPGAGRGGRPNKRTRPGRNKPGQQPEKPAAEENLPAS", "length": 206 }, "evidence": [ { "id": "F1SJ50", "url": "https://omabrowser.org/oma/group/F1SJ50/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q5PPN2-1", "protein_name": "Ribonuclease P protein subunit p25", "gene_name": "Rpp25", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MENFRKVRSEEAPAGDGDEGGSPSSGPFADLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPPNLSPGPSSPPTVSTSKRSLGESAAGEGTAKRSQPEPEAENEDRTA", "length": 199 }, "evidence": [ { "id": "F1SJ50", "url": "https://omabrowser.org/oma/group/F1SJ50/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91WE3-1", "protein_name": "Ribonuclease P protein subunit p25", "gene_name": "Rpp25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENFRKVRSEEAPAGDGDEGGSPNSGPFADLAPGAVHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPPNLSPGPSSPPTVSTSKRSLGESAAEEGTAKRSQPEPEAENEDRTA", "length": 199 }, "evidence": [ { "id": "F1SJ50", "url": "https://omabrowser.org/oma/group/F1SJ50/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BUL9-1", "protein_name": "Ribonuclease P protein subunit p25", "gene_name": "RPP25", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MENFRKVRSEEAPAGCGAEGGGPGSGPFADLAPGAVHMRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRLRYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNPHPGPSSPPAAPASKRSLGEPAAGEGSAKRSQPEPGVADEDQTA", "length": 199 }, "evidence": [ { "id": "F1SJ50", "url": "https://omabrowser.org/oma/group/F1SJ50/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "multimeric ribonuclease P complex", "id": "GO:0030681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030681", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "pmid": "" }, { "name": "ribonuclease MRP complex", "id": "GO:0000172", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000172", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "pmid": "" }, { "name": "ribonuclease P activity", "id": "GO:0004526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004526", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "pmid": "" }, { "name": "ribonuclease P RNA binding", "id": "GO:0033204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033204", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "pmid": "" }, { "name": "tRNA 5'-leader removal", "id": "GO:0001682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001682", "evidence": [ { "database": "UniProtKB", "id": "F1SJ50", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ50", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ50" }, { "id": "PF01918", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01918" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA/RNA-binding protein Alba-like", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 114, "start_aa": "His", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 128 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ73-1", "uniprot_ac": "F1SJ73", "uniprot_id": "F1SJ73_PIG", "mass": { "chemical_mass": 21849.0, "monoisotopic_mass": 21849.0 }, "refseq": { "ac": "NP_001230221", "name": "U3 small nucleolar ribonucleoprotein IMP3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230221" }, "gene_names": [ { "name": "IMP3", "type": "recommended", "evidence": [ { "id": "F1SJ73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" } ] }, { "name": "IMP3", "type": "synonym", "evidence": [ { "id": "NP_001230221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230221" } ] } ], "protein_names": [ { "name": "U3 small nucleolar ribonucleoprotein protein IMP3", "type": "recommended", "evidence": [ { "id": "F1SJ73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ73/entry#names_and_taxonomy" } ] }, { "name": "IMP3, U3 small nucleolar ribonucleoprotein, homolog", "type": "synonym", "evidence": [ { "id": "NP_001230221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230221" } ] }, { "name": "U3 small nucleolar ribonucleoprotein IMP3", "type": "synonym", "evidence": [ { "id": "NP_001230221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230221" } ] }, { "name": "U3 small nucleolar ribonucleoprotein protein imp3", "type": "synonym", "evidence": [ { "id": "F1SJ73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ73/entry#names_and_taxonomy" } ] }, { "name": "u3 small nucleolar ribonucleoprotein protein IMP3", "type": "synonym", "evidence": [ { "id": "NP_001230221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230221" } ] } ], "function": [ { "annotation": "Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing. Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73#function" }, { "database": "UniProtKB", "id": "ARBA00045281", "url": "https://www.uniprot.org/uniprotkb/ARBA00045281#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IMP3", "url": "https://www.uniprot.org/uniprotkb/F1SJ73", "locus": { "chromosome": "7", "start_pos": 58024496, "end_pos": 58023368, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000042572", "url": "https://www.ensembl.org/id/ENSSSCG00000042572" } ] } } ], "crossref": [ { "id": "F1SJ73", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ73", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000042572", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000042572", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00165", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00165", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100151831", "url": "https://www.ncbi.nlm.nih.gov/gene/100151831", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022801", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022801", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036986", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151831", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151831", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJ73", "url": "https://www.orthodb.org/?gene=F1SJ73", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11831", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11831", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11831:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11831:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00163", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00163", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01479", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01479", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230221", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230221", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ73-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFDLEA", "length": 184, "header": "tr|F1SJ73-1|F1SJ73_PIG Isoform 1 of U3 small nucleolar ribonucleoprotein protein IMP3 OS=Sus scrofa OX=9823 GN=IMP3 PE=3 SV=3 CANONICAL=F1SJ73-1" }, "isoforms": [ { "isoform_ac": "F1SJ73-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ73/entry#F1SJ73-1", "sequence": { "sequence": "MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVTFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFDLEA", "length": 184, "header": "tr|F1SJ73-1|F1SJ73_PIG Isoform 1 of U3 small nucleolar ribonucleoprotein protein IMP3 OS=Sus scrofa OX=9823 GN=IMP3 PE=3 SV=3 CANONICAL=F1SJ73-1" }, "locus": { "chromosome": "7", "start_pos": 58023965, "end_pos": 58023414, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002101.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002101.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002051.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002051.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151831", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151831", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "snoRNA binding", "id": "GO:0030515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030515", "evidence": [ { "database": "UniProtKB", "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" } ], "pmid": "" }, { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" } ], "pmid": "" }, { "name": "ribosomal small subunit biogenesis", "id": "GO:0042274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042274", "evidence": [ { "database": "UniProtKB", "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Mpp10 complex", "id": "GO:0034457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034457", "evidence": [ { "database": "UniProtKB", "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F1SJ73", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ73-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 184, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ73-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ73" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" }, { "id": "SM00363", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00363" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNA-binding S4", "eco_id": "ECO_0000259", "start_pos": 109, "end_pos": 176, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SJ73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ73" }, { "id": "SM01390", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01390" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Small ribosomal subunit protein uS4 N-terminal", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 108, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ75-1", "uniprot_ac": "F1SJ75", "uniprot_id": "F1SJ75_PIG", "mass": { "chemical_mass": 34772.0, "monoisotopic_mass": 34772.0 }, "refseq": { "ac": "XP_020940706", "name": "olfactory receptor 1013-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940706" }, "gene_names": [ { "name": "LOC110259554", "type": "recommended", "evidence": [ { "id": "F1SJ75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" } ] }, { "name": "LOC110259554", "type": "synonym", "evidence": [ { "id": "XP_020940706", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940706" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJ75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ75/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 1013-like", "type": "synonym", "evidence": [ { "id": "XP_020940706", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940706" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110259554", "url": "https://www.uniprot.org/uniprotkb/F1SJ75", "locus": {} } ], "crossref": [ { "id": "F1SJ75", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ75", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15418", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15418", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110259554", "url": "https://www.ncbi.nlm.nih.gov/gene/110259554", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110259554", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259554", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJ75", "url": "https://www.orthodb.org/?gene=F1SJ75", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020940706", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940706", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ75-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERSNHTVTEFILVGFTTDPVVQLVLFVAFVGVYSVTLIGNTTLMVLICNDSRLHTPMYFFTGNLSFLDLWYSSVYTPKILVTCISEDKSISFAGCVAQFFFSAGLGYSECYLLAAMAYDRYVAVSNPLLYAQAMSRTLCCSLVTYSYTGGFVNAIILTSNTFTLNFCGDNVIDDFFCDVPPLVKLACDVKDTYQDVLYFLLGSNVVAPAVLILASYLFIITTILRIRSTQGRLKAFSTCSSHLISVTLYYGSVLYIYSRPSSSYSLERDKVVSTFYTVLFPMLNPMIYSLRNKDVKGALKKLFRIMQTEG", "length": 311, "header": "tr|F1SJ75-1|F1SJ75_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110259554 PE=3 SV=3 CANONICAL=F1SJ75-1" }, "isoforms": [ { "isoform_ac": "F1SJ75-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ75/entry#F1SJ75-1", "sequence": { "sequence": "MERSNHTVTEFILVGFTTDPVVQLVLFVAFVGVYSVTLIGNTTLMVLICNDSRLHTPMYFFTGNLSFLDLWYSSVYTPKILVTCISEDKSISFAGCVAQFFFSAGLGYSECYLLAAMAYDRYVAVSNPLLYAQAMSRTLCCSLVTYSYTGGFVNAIILTSNTFTLNFCGDNVIDDFFCDVPPLVKLACDVKDTYQDVLYFLLGSNVVAPAVLILASYLFIITTILRIRSTQGRLKAFSTCSSHLISVTLYYGSVLYIYSRPSSSYSLERDKVVSTFYTVLFPMLNPMIYSLRNKDVKGALKKLFRIMQTEG", "length": 311, "header": "tr|F1SJ75-1|F1SJ75_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110259554 PE=3 SV=3 CANONICAL=F1SJ75-1" }, "locus": { "chromosome": "2", "start_pos": 14055462, "end_pos": 14054530, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014420.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014420.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014029.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014029.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110259554", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259554", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" } ], "pmid": "" }, { "name": "sensory perception of smell", "id": "GO:0007608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007608", "evidence": [ { "database": "UniProtKB", "id": "F1SJ75", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ75-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ75-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ75" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ75" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 41, "end_pos": 43 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ77-1", "uniprot_ac": "F1SJ77", "uniprot_id": "F1SJ77_PIG", "mass": { "chemical_mass": 35292.0, "monoisotopic_mass": 35292.0 }, "refseq": { "ac": "XP_003122825", "name": "olfactory receptor 2G3-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122825" }, "gene_names": [ { "name": "LOC100518356", "type": "recommended", "evidence": [ { "id": "F1SJ77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ77" } ] }, { "name": "LOC100518356", "type": "synonym", "evidence": [ { "id": "XP_003122825", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122825" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJ77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ77/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 2G3-like", "type": "synonym", "evidence": [ { "id": "XP_003122825", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122825" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ77", "url": "https://www.uniprot.org/uniprotkb/F1SJ77#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ77", "url": "https://www.uniprot.org/uniprotkb/F1SJ77" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100518356", "url": "https://www.uniprot.org/uniprotkb/F1SJ77", "locus": {} } ], "crossref": [ { "id": "F1SJ77", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ77", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013197", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013197", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15237", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15237", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518356", "url": "https://www.ncbi.nlm.nih.gov/gene/100518356", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518356", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518356", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJ77", "url": "https://www.orthodb.org/?gene=F1SJ77", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122825", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122825", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ77", "url": "https://www.uniprot.org/uniprotkb/F1SJ77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ77-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMIKTNFTVTEFVFLGLSSQPKMQLILFVMFLFFYLLTVAGNVIIITVIQIEPRLHTPMYFFLTNLSFLDICYTSTNVPKMLSNMVGKKKKTIPFFSCAAQMFFSLSFGMIECVLLGVMAYDRYVAICQLLHYIVIMNQITCVQLATISWFSSFLSSVVINIFTLSLPYCGPNVLNHFFCEVPSILRLACTDTSFTEMVVFIFSIIIVFIPFLLIIVSYTQILLSVLRMQSASGRQKALSTCASHQTGVALFYGTAIFMYMRPQSKSSRAGGKIIVVFYTVIPPMLNPLIYSLRNQDVKGGLRRAFAKQRA", "length": 312, "header": "tr|F1SJ77-1|F1SJ77_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100518356 PE=3 SV=4 CANONICAL=F1SJ77-1" }, "isoforms": [ { "isoform_ac": "F1SJ77-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ77/entry#F1SJ77-1", "sequence": { "sequence": "MNMIKTNFTVTEFVFLGLSSQPKMQLILFVMFLFFYLLTVAGNVIIITVIQIEPRLHTPMYFFLTNLSFLDICYTSTNVPKMLSNMVGKKKKTIPFFSCAAQMFFSLSFGMIECVLLGVMAYDRYVAICQLLHYIVIMNQITCVQLATISWFSSFLSSVVINIFTLSLPYCGPNVLNHFFCEVPSILRLACTDTSFTEMVVFIFSIIIVFIPFLLIIVSYTQILLSVLRMQSASGRQKALSTCASHQTGVALFYGTAIFMYMRPQSKSSRAGGKIIVVFYTVIPPMLNPLIYSLRNQDVKGGLRRAFAKQRA", "length": 312, "header": "tr|F1SJ77-1|F1SJ77_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100518356 PE=3 SV=4 CANONICAL=F1SJ77-1" }, "locus": { "chromosome": "AEMK02000449.1", "start_pos": 884763, "end_pos": 883828, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014417.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014417.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014027.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014027.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ77", "url": "https://www.uniprot.org/uniprotkb/F1SJ77" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518356", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518356", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJ77", "url": "https://www.uniprot.org/uniprotkb/F1SJ77" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJ77", "url": "https://www.uniprot.org/uniprotkb/F1SJ77" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ77", "url": "https://www.uniprot.org/uniprotkb/F1SJ77" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SJ77", "url": "https://www.uniprot.org/uniprotkb/F1SJ77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ77-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ77-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ77" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ77" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 292, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 66, "end_pos": 68 }, { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ79-1", "uniprot_ac": "F1SJ79", "uniprot_id": "F1SJ79_PIG", "mass": { "chemical_mass": 34723.0, "monoisotopic_mass": 34723.0 }, "refseq": { "ac": "XP_020941127", "name": "putative olfactory receptor 5AK3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941127" }, "gene_names": [ { "name": "LOC110259717", "type": "recommended", "evidence": [ { "id": "F1SJ79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" } ] }, { "name": "LOC110259717", "type": "synonym", "evidence": [ { "id": "XP_020941127", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941127" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJ79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ79/entry#names_and_taxonomy" } ] }, { "name": "putative olfactory receptor 5AK3", "type": "synonym", "evidence": [ { "id": "XP_020941127", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941127" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110259717", "url": "https://www.uniprot.org/uniprotkb/F1SJ79", "locus": {} } ], "crossref": [ { "id": "F1SJ79", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ79", "database": "AlphaFoldDB", "categories": [] }, { "id": "110259717", "url": "https://www.ncbi.nlm.nih.gov/gene/110259717", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110259717", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259717", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJ79", "url": "https://www.orthodb.org/?gene=F1SJ79", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020941127", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941127", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ79-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ79-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310, "header": "tr|F1SJ79-1|F1SJ79_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110259717 PE=3 SV=1 CANONICAL=F1SJ79-1" }, "isoforms": [ { "isoform_ac": "F1SJ79-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ79/entry#F1SJ79-1", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310, "header": "tr|F1SJ79-1|F1SJ79_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110259717 PE=3 SV=1 CANONICAL=F1SJ79-1" }, "locus": { "chromosome": "2", "start_pos": 13865048, "end_pos": 13864119, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014415.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014415.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014025.1", "url": "https://www.ensembl.org/id/ENSSSCP00000014025.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110259717", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259717", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "F1SJ79", "url": "https://omabrowser.org/oma/group/F1SJ79/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" } ], "pmid": "" }, { "name": "sensory perception of smell", "id": "GO:0007608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007608", "evidence": [ { "database": "UniProtKB", "id": "F1SJ79", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ79-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 310, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ79-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ79" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ79" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 291, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 156, "end_pos": 158 }, { "start_pos": 160, "end_pos": 162 }, { "start_pos": 207, "end_pos": 209 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ80-1", "uniprot_ac": "F1SJ80", "uniprot_id": "F1SJ80_PIG", "mass": { "chemical_mass": 35621.0, "monoisotopic_mass": 35621.0 }, "refseq": { "ac": "XP_020940702", "name": "putative olfactory receptor 5AK3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940702" }, "gene_names": [ { "name": "LOC110259550", "type": "recommended", "evidence": [ { "id": "F1SJ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" } ] }, { "name": "LOC110259550", "type": "synonym", "evidence": [ { "id": "XP_020940702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940702" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ80/entry#names_and_taxonomy" } ] }, { "name": "putative olfactory receptor 5AK3", "type": "synonym", "evidence": [ { "id": "XP_020940702", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940702" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110259550", "url": "https://www.uniprot.org/uniprotkb/F1SJ80", "locus": {} } ], "crossref": [ { "id": "F1SJ80", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ80", "database": "AlphaFoldDB", "categories": [] }, { "id": "110259550", "url": "https://www.ncbi.nlm.nih.gov/gene/110259550", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110259550", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259550", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VYIQLVA", "url": "https://omabrowser.org/oma/group/VYIQLVA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ80", "url": "https://www.orthodb.org/?gene=F1SJ80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020940702", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020940702", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ80-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTQGNSTEITEFFLLGFGAQHKFRYVLFPVFLLIYVTSLVGNIGMILLIKTDSRLQTPMYFFLQHLAFVDLCYTTAITPKMLQNFIVENKAISFKGCVMQLLVYATFATSDAYLLAAMAVDRYVAICNPLHYPIVMSRRVCFWLVAGSYVMGSMNASVHTGFTFSVFFCKGNTINHFFCDVPPILALSCSSIDINVMLLVVFVGFNLLFTVLVVIFSYVNIIPAVLKISSDAGRRKAFSTCGSHLTTVTVFYGTLSYMYLQPHSHNSQENMKVASVFYGIMIPMLNPMIYSLRNKEVKEALKVLWKKYSSRLDSNS", "length": 316, "header": "tr|F1SJ80-1|F1SJ80_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110259550 PE=3 SV=1 CANONICAL=F1SJ80-1" }, "isoforms": [ { "isoform_ac": "F1SJ80-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ80/entry#F1SJ80-1", "sequence": { "sequence": "MTQGNSTEITEFFLLGFGAQHKFRYVLFPVFLLIYVTSLVGNIGMILLIKTDSRLQTPMYFFLQHLAFVDLCYTTAITPKMLQNFIVENKAISFKGCVMQLLVYATFATSDAYLLAAMAVDRYVAICNPLHYPIVMSRRVCFWLVAGSYVMGSMNASVHTGFTFSVFFCKGNTINHFFCDVPPILALSCSSIDINVMLLVVFVGFNLLFTVLVVIFSYVNIIPAVLKISSDAGRRKAFSTCGSHLTTVTVFYGTLSYMYLQPHSHNSQENMKVASVFYGIMIPMLNPMIYSLRNKEVKEALKVLWKKYSSRLDSNS", "length": 316, "header": "tr|F1SJ80-1|F1SJ80_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110259550 PE=3 SV=1 CANONICAL=F1SJ80-1" }, "locus": { "chromosome": "2", "start_pos": 13879994, "end_pos": 13879047, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014414.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014414.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014024.1", "url": "https://www.ensembl.org/id/ENSSSCP00000014024.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110259550", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259550", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MDN7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "ITSRNSTEVTEFFLLGFGVQYEFQYFLFTVFLVIYGTSMVGIIGMILLIKIDSRLQTPMYFFLQHLAFVDICFISVVTPKMMQNFIIENKSISFKGCVVQLLVYTTFVTGDCYLLAATAVDHYVAVCNPLHYPTIMSRRVCIQLVAGSYIMGSINASVHTGFTFSLVFCKGNTINHFFCDIPPVLALSCSNTDINIMLIFAFVGFNLTSTVLAIIVSYMFILAAILKISSNAGKKKAFSTCASYLTAVTIFYGTLSYMYLQSYSHNSHENRKVASVFYGIVIPMLNPLIYSLRNKEVKEALKVIWKKFFFRLDPKC", "length": 316 }, "evidence": [ { "id": "F1SJ80", "url": "https://omabrowser.org/oma/group/F1SJ80/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZGH1-1", "protein_name": "Olfactory receptor", "gene_name": "Or5ak24", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQDNGTKVTDFYLLGFGVQRDIQCILFIVFLVIYVISMVGNTGMILLINTDSRLQTPMYFFLQHLAFVDICYTSAITPKMLQNFMVEDKSITFKGCVVQLFVYAIFATSDCYLLAVMAVDRYVAICKPLRYPIIMSRQVCIQLVAISYLMGSINSSVHTGFTFSLSFCKSKVNHFFCDIPPIVTLSCYNNDINFMLILVFVGFNLTFTVLIVILSYIYIMAAILKMSSTAGRKKTFSTCASHLTAVTIFYGTLAYMYLQPHSDNSEENMKVASVFYGIVIPMLNPLIYSLRNKEVKDAIKATGKKFLKLDLNY", "length": 314 }, "evidence": [ { "id": "F1SJ80", "url": "https://omabrowser.org/oma/group/F1SJ80/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VF73-1", "protein_name": "Olfactory receptor", "gene_name": "Or5ak24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTQGNGTEVTDFYLLGFGVERDIQCVLFIVFLVIYVTSMVGNTGMILLINTDSRLQTPMYFFLQHLAFVDICYTSAITPKMLQNFMVEDKSITFKGCVIQLFIYAVFATSDCYLLAVMAVDRYVAICKPLRYPIIMSRQVCVQLVAVSYLMGSINSSVHTGFTFSLSFCASKINHFFCDIPPIVTLSCYNNDINFMLILIFVGFNLTFTVSVVILSYIYIMAAILKMSSTAGRKKTFSTCASHLTAVTIFYGTLAYMYLQPPSDNSEENMKVASVFYGIVIPMLNPLIYSLRNKEVKDAIKATGKKFLKLDLNY", "length": 314 }, "evidence": [ { "id": "F1SJ80", "url": "https://omabrowser.org/oma/group/F1SJ80/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" } ], "pmid": "" }, { "name": "sensory perception of smell", "id": "GO:0007608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007608", "evidence": [ { "database": "UniProtKB", "id": "F1SJ80", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ80-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ80-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ80" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ80" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ81-1", "uniprot_ac": "F1SJ81", "uniprot_id": "F1SJ81_PIG", "mass": { "chemical_mass": 35261.0, "monoisotopic_mass": 35261.0 }, "refseq": { "ac": "XP_003122814", "name": "olfactory receptor 1009", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122814" }, "gene_names": [ { "name": "LOC100515647", "type": "recommended", "evidence": [ { "id": "F1SJ81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ81" } ] }, { "name": "LOC100515647", "type": "synonym", "evidence": [ { "id": "XP_003122814", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122814" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJ81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ81/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 1009", "type": "synonym", "evidence": [ { "id": "XP_003122814", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122814" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ81", "url": "https://www.uniprot.org/uniprotkb/F1SJ81#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ81", "url": "https://www.uniprot.org/uniprotkb/F1SJ81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100515647", "url": "https://www.uniprot.org/uniprotkb/F1SJ81", "locus": {} } ], "crossref": [ { "id": "F1SJ81", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ81", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15414", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15414", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515647", "url": "https://www.ncbi.nlm.nih.gov/gene/100515647", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515647", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515647", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJ81", "url": "https://www.orthodb.org/?gene=F1SJ81", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122814", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122814", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ81", "url": "https://www.uniprot.org/uniprotkb/F1SJ81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ81-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASENYTRVTEFIFRGLSYNPHLQVFLFLLFLSFYIINLTGNLGMIFLIQIDSHLHTPMYFFLSHLSFVDLCFSSVVSPRMLADFFVKRKAISFLGCALQQWFFGFFVAAECFLLASMAYDRYVAICNPLLYSVAMSQRLCIQLVVGPYVIGFVNTMTHTTNAFRLPFCGPNVINHFFCDMSPLLSLVCADTRITELVVFVVAGAVGVFSGLSILISYVYILVAILKIRSADGRCKAFSTCSSHLTAVSILYGTLFFIYVRPSASFSLDVNKVVSVFYTAVIPMLNPLIYSLRNKEVKDAIRRTVAKRKFGRA", "length": 313, "header": "tr|F1SJ81-1|F1SJ81_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100515647 PE=3 SV=4 CANONICAL=F1SJ81-1" }, "isoforms": [ { "isoform_ac": "F1SJ81-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ81/entry#F1SJ81-1", "sequence": { "sequence": "MASENYTRVTEFIFRGLSYNPHLQVFLFLLFLSFYIINLTGNLGMIFLIQIDSHLHTPMYFFLSHLSFVDLCFSSVVSPRMLADFFVKRKAISFLGCALQQWFFGFFVAAECFLLASMAYDRYVAICNPLLYSVAMSQRLCIQLVVGPYVIGFVNTMTHTTNAFRLPFCGPNVINHFFCDMSPLLSLVCADTRITELVVFVVAGAVGVFSGLSILISYVYILVAILKIRSADGRCKAFSTCSSHLTAVSILYGTLFFIYVRPSASFSLDVNKVVSVFYTAVIPMLNPLIYSLRNKEVKDAIRRTVAKRKFGRA", "length": 313, "header": "tr|F1SJ81-1|F1SJ81_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100515647 PE=3 SV=4 CANONICAL=F1SJ81-1" }, "locus": { "chromosome": "2", "start_pos": 14002193, "end_pos": 14001255, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014413.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014413.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014023.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014023.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ81", "url": "https://www.uniprot.org/uniprotkb/F1SJ81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515647", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515647", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJ81", "url": "https://www.uniprot.org/uniprotkb/F1SJ81" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJ81", "url": "https://www.uniprot.org/uniprotkb/F1SJ81" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SJ81", "url": "https://www.uniprot.org/uniprotkb/F1SJ81" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ81", "url": "https://www.uniprot.org/uniprotkb/F1SJ81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ81-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ81-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ81" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ81" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 38, "end_pos": 40 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ82-1", "uniprot_ac": "F1SJ82", "uniprot_id": "F1SJ82_PIG", "mass": { "chemical_mass": 35592.0, "monoisotopic_mass": 35592.0 }, "refseq": { "ac": "XP_003122813", "name": "olfactory receptor 1009", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122813" }, "gene_names": [ { "name": "LOC100515469", "type": "recommended", "evidence": [ { "id": "F1SJ82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ82" } ] }, { "name": "LOC100515469", "type": "synonym", "evidence": [ { "id": "XP_003122813", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122813" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJ82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ82/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 1009", "type": "synonym", "evidence": [ { "id": "XP_003122813", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122813" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ82", "url": "https://www.uniprot.org/uniprotkb/F1SJ82#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ82", "url": "https://www.uniprot.org/uniprotkb/F1SJ82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100515469", "url": "https://www.uniprot.org/uniprotkb/F1SJ82", "locus": {} } ], "crossref": [ { "id": "F1SJ82", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ82", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15414", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15414", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515469", "url": "https://www.ncbi.nlm.nih.gov/gene/100515469", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515469", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515469", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HPRMQVF", "url": "https://omabrowser.org/oma/group/HPRMQVF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ82", "url": "https://www.orthodb.org/?gene=F1SJ82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003122813", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122813", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ82", "url": "https://www.uniprot.org/uniprotkb/F1SJ82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ82-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGENYTRITEFIFTGLKYHPQMQVFLFLLFLLFYLVTMTANLGMIILIQLDSRLHTPMYFFLSHLSFVDICFSSVVGPKMLRDFFAERKAISFLGCALQQWFFGFFVAIECLLLASMAYDRYVAICNPLLYSVAMSQRLCIQLVVGPYTVGFLNTMTHTTAAFRLPFCGSNIINHFFCDMSPLLSLICADIWINKLLVFIVAGAVLVVSSLTIIISYFYIFIAILRIRSADGRHKAFSTCSSHLTVVSILYGTLFFIYVRPGAIFSLDLNKGVSVFYTAVIPMLNPLIYSLRNKEVKAAMCRTIARRKFCLGS", "length": 314, "header": "tr|F1SJ82-1|F1SJ82_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100515469 PE=3 SV=2 CANONICAL=F1SJ82-1" }, "isoforms": [ { "isoform_ac": "F1SJ82-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ82/entry#F1SJ82-1", "sequence": { "sequence": "MAGENYTRITEFIFTGLKYHPQMQVFLFLLFLLFYLVTMTANLGMIILIQLDSRLHTPMYFFLSHLSFVDICFSSVVGPKMLRDFFAERKAISFLGCALQQWFFGFFVAIECLLLASMAYDRYVAICNPLLYSVAMSQRLCIQLVVGPYTVGFLNTMTHTTAAFRLPFCGSNIINHFFCDMSPLLSLICADIWINKLLVFIVAGAVLVVSSLTIIISYFYIFIAILRIRSADGRHKAFSTCSSHLTVVSILYGTLFFIYVRPGAIFSLDLNKGVSVFYTAVIPMLNPLIYSLRNKEVKAAMCRTIARRKFCLGS", "length": 314, "header": "tr|F1SJ82-1|F1SJ82_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100515469 PE=3 SV=2 CANONICAL=F1SJ82-1" }, "locus": { "chromosome": "2", "start_pos": 13983719, "end_pos": 13982778, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014412.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014412.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014022.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014022.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ82", "url": "https://www.uniprot.org/uniprotkb/F1SJ82" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515469", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515469", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K1I3-1", "protein_name": "Olfactory receptor", "gene_name": "Or5g9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADENYTRITEFIFIGLRYHAKLQVFLFLLFLLFYLVTMTGNLGMIILIRVDSRLHTPMYFFLSHLSFVDICFSSVVGPKMLMDFFADRKVISFLGCVLQQWFFGFFVAIECLLLASMAYDRYVAICNPLLYSVAMSQRLCIQLVVGPYAVGFFNTMTHTTAAFRLPFCGSNIINHFFCDMSPILSLICADIRINKLLVFVVAGAVLVVSSTTIIISYFHILIAILRIRSAEGRRKAFSTCSSHVTAVSILYGTLFFIYVRPSAISSLDLNKVVSVFYTAVIPMLNPLIYSLRNKEVKAAMGRTVAKAKVFLKN", "length": 314 }, "evidence": [ { "id": "F1SJ82", "url": "https://omabrowser.org/oma/group/F1SJ82/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VFK1-1", "protein_name": "Olfactory receptor 5G9", "gene_name": "Or5g9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADENYTRITEFIFIGLRYHPNLQVFLFLLFLLFYLVTMTGNLGMIILIRVDSRLHTPMYFFLSHLSFVDICFSSVVAPKMLTDFFADKKAISFLGCVLQQWFFGFFVAIECLLLASMAYDRYVAICNPLLYSVAMSQRLCIQLVIGPYAVGFFNTMTHTTAAFRLPFCGSNIINHFFCDMSPILSLICADIRINKLLVFIVAGAVLIVSSTTIIVSYFHILIAILRIRSAEGRRKAFSTCSSHVTAVSILYGTLFFIYVRPSAISSLDLNKVVSVFYTAVIPMLNPLIYSLRNKEVKSAMGRTVAKAKVFLKN", "length": 314 }, "evidence": [ { "id": "F1SJ82", "url": "https://omabrowser.org/oma/group/F1SJ82/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJ82", "url": "https://www.uniprot.org/uniprotkb/F1SJ82" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJ82", "url": "https://www.uniprot.org/uniprotkb/F1SJ82" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SJ82", "url": "https://www.uniprot.org/uniprotkb/F1SJ82" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ82", "url": "https://www.uniprot.org/uniprotkb/F1SJ82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ82-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 314, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ82-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ82" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ82" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Ala", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ90-1", "uniprot_ac": "F1SJ90", "uniprot_id": "F1SJ90_PIG", "mass": { "chemical_mass": 192979.0, "monoisotopic_mass": 192979.0 }, "refseq": { "ac": "NP_001231117", "name": "inactive tyrosine-protein kinase PEAK1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231117" }, "gene_names": [ { "name": "PEAK1", "type": "recommended", "evidence": [ { "id": "F1SJ90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ] }, { "name": "PEAK1", "type": "synonym", "evidence": [ { "id": "NP_001231117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231117" } ] } ], "protein_names": [ { "name": "Inactive tyrosine-protein kinase PEAK1", "type": "recommended", "evidence": [ { "id": "F1SJ90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ90/entry#names_and_taxonomy" } ] }, { "name": "NKF3 kinase family member", "type": "synonym", "evidence": [ { "id": "NP_001231117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231117" } ] }, { "name": "Pseudopodium-enriched atypical kinase 1", "type": "synonym", "evidence": [ { "id": "F1SJ90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ90/entry#names_and_taxonomy" } ] }, { "name": "Sugen kinase 269", "type": "synonym", "evidence": [ { "id": "F1SJ90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ90/entry#names_and_taxonomy" } ] }, { "name": "Tyrosine-protein kinase SgK269", "type": "synonym", "evidence": [ { "id": "F1SJ90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ90/entry#names_and_taxonomy" } ] }, { "name": "inactive tyrosine-protein kinase PEAK1", "type": "synonym", "evidence": [ { "id": "NP_001231117", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231117" } ] } ], "function": [ { "annotation": "Probable catalytically inactive kinase. Scaffolding protein that regulates the cytoskeleton to control cell spreading and migration by modulating focal adhesion dynamics. Acts as a scaffold for mediating EGFR signaling.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90#function" }, { "database": "UniProtKB", "id": "ARBA00058561", "url": "https://www.uniprot.org/uniprotkb/ARBA00058561#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PEAK1", "url": "https://www.uniprot.org/uniprotkb/F1SJ90", "locus": { "chromosome": "7", "start_pos": 57223851, "end_pos": 57503639, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001869", "url": "https://www.ensembl.org/id/ENSSSCG00000001869" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001869", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001869", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152646", "url": "https://www.ncbi.nlm.nih.gov/gene/100152646", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008266", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008266", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051511", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051511", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152646", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152646", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MGWNRNR", "url": "https://omabrowser.org/oma/group/MGWNRNR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJ90", "url": "https://www.orthodb.org/?gene=F1SJ90", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22972", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22972", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22972:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22972:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013420", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013420", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231117", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231117", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ90-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ90-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSACNTFTEHVWKPGECKNCFKPKSLHQLPPDPEKAPITHGNKTNANHSNNHRIRNTGNFRPPVAKKPTIAVKPTMMVADGQSVCGELSIQENCENKPVIIGWNRNRTALNKKPLNNNNEDDIEGFSHVPKPYDNNDSAKKVSNNNNGLTEVLKEIAGLDTTPQVKGNETNSRETFLGRINDCYKRSLERKLPPSCMMGGIRDTQGKHVILSGSTEVISNEGGRFCYPEFSSGEESEEDALFSNMEEEHESWDESDEELLAMEIRMRGQPRFANFRANTLSPVRFFVDKKWNTVPLRNKSLQRICAVDYDDSYDEILNGYEENSVVSYGPGSIQSMVSSDSTSPDSSLTEESRSETASSLSQKVCNGGLSPGNLGDSKDMKESEPNCESPSGNNQEKTSAQASKSSVKVPETHKAVLALRLEEKDGKIAVQTEKQESKASTDIAGQAVTINLVPVEEQAKPYRVVNLEQPLCKPYTVVDVSAAMASEHLEGPVTSPKTKSSSSTPNSPVTSPALTSGQVSAHFQKSSAIRYQEVWTSSTSPRQKIPKVELISGGAGPNVPPRKNCHKSAPTSPTATNISSKTIPVKSPNLSEIKFNSYNNAGMPPFPIIIHDEPTYARSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELSVKEKTTSVISHTYEEIETESKVSDNTTNKPTECPQAKGFSNSTERKRGSVAQKVQEFNSCLNRGQSSPQRSYSSSHSSPTKPQRTTQEPVAKTESTQESQVVSNSSSTREKASTVLSQIVASIQPPQSPPEMPQSGPKACSVEELYAVPPDASVAKSTPKSTPARPKSLFTSQPSSETEAAPQTTESPTTKVQKDPLMKPVTTPPSKLVTNPPNEPPPPFPPPRSTSSPYHASNLLQRHFTNWTKPTSPTRSTEAESVLHSEGSRRAADTKPKRWISFKSFFRRRKTDEEEDKEKDREKGKLVGLDGTVIHMLPPPPVQRHHWFTEAKGESNEKPAIVFMYRCEPAQGQLSVDQGKARAEQSAVTERSGMEDGLLQDSEKKKRSHSSPSQIPKKILSHVTHEVTEDFSPRDPRTVVVKQDGGGCTSVTTALPLPELEREEEKEDISDPMDLNPCSATYSNLGQSRAAMIPPKHPRQPKGALDDAIAFGGKTDQEAPNASQPTPPPLPKKMIIRANTEPISKELQKSLETTLCVMANPTYDIDPNWDASSAGSSISYELKGLDIESYDSLERPLHKERPVPSAANSISSLTTLSIKDRFSNSTESLSSRRGPSCRQGRGIQKPQRQALYRGLENREEVVGKIRSLHADALKKLAIKCEDLFMAGQKDQLRFGVDSWSDFRLTSDKPCCEAGDAVYYTASYAKDPLNNYAVKICKSKAKESQQYYHSLAVRQSLAVHFNIQQDCGHFLAEVPKRLLPWEDPDAPGEEEEEMEAAEEVKGETDGENPEPSSEAESSHKESQAVISRKQRSHVVVITREVPCLTVADFVRDSLAQHGKSPDTYERQVCLLLLQLCSGLEHLKPYHVTHCDLRLENLLLVHYQPGGTSQGPGPVEPGPTSSCPTRLIVSNFSQAKQKSHLVDPEILRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEKEYTRADLPRIPLRSPYSRGLQQLASCLLNPNPSERILISDAKGILQCLLWGPREDLFQTFTASPSPVQRNALLQNWLDIKRTLLMIKFAEKSLDREGGVSLEDWLCAQYLAFATPDSLSCIVKILQPR", "length": 1748, "header": "tr|F1SJ90-1|F1SJ90_PIG Isoform 1 of Inactive tyrosine-protein kinase PEAK1 OS=Sus scrofa OX=9823 GN=PEAK1 PE=3 SV=2 CANONICAL=F1SJ90-1" }, "isoforms": [ { "isoform_ac": "F1SJ90-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ90/entry#F1SJ90-1", "sequence": { "sequence": "MSACNTFTEHVWKPGECKNCFKPKSLHQLPPDPEKAPITHGNKTNANHSNNHRIRNTGNFRPPVAKKPTIAVKPTMMVADGQSVCGELSIQENCENKPVIIGWNRNRTALNKKPLNNNNEDDIEGFSHVPKPYDNNDSAKKVSNNNNGLTEVLKEIAGLDTTPQVKGNETNSRETFLGRINDCYKRSLERKLPPSCMMGGIRDTQGKHVILSGSTEVISNEGGRFCYPEFSSGEESEEDALFSNMEEEHESWDESDEELLAMEIRMRGQPRFANFRANTLSPVRFFVDKKWNTVPLRNKSLQRICAVDYDDSYDEILNGYEENSVVSYGPGSIQSMVSSDSTSPDSSLTEESRSETASSLSQKVCNGGLSPGNLGDSKDMKESEPNCESPSGNNQEKTSAQASKSSVKVPETHKAVLALRLEEKDGKIAVQTEKQESKASTDIAGQAVTINLVPVEEQAKPYRVVNLEQPLCKPYTVVDVSAAMASEHLEGPVTSPKTKSSSSTPNSPVTSPALTSGQVSAHFQKSSAIRYQEVWTSSTSPRQKIPKVELISGGAGPNVPPRKNCHKSAPTSPTATNISSKTIPVKSPNLSEIKFNSYNNAGMPPFPIIIHDEPTYARSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELSVKEKTTSVISHTYEEIETESKVSDNTTNKPTECPQAKGFSNSTERKRGSVAQKVQEFNSCLNRGQSSPQRSYSSSHSSPTKPQRTTQEPVAKTESTQESQVVSNSSSTREKASTVLSQIVASIQPPQSPPEMPQSGPKACSVEELYAVPPDASVAKSTPKSTPARPKSLFTSQPSSETEAAPQTTESPTTKVQKDPLMKPVTTPPSKLVTNPPNEPPPPFPPPRSTSSPYHASNLLQRHFTNWTKPTSPTRSTEAESVLHSEGSRRAADTKPKRWISFKSFFRRRKTDEEEDKEKDREKGKLVGLDGTVIHMLPPPPVQRHHWFTEAKGESNEKPAIVFMYRCEPAQGQLSVDQGKARAEQSAVTERSGMEDGLLQDSEKKKRSHSSPSQIPKKILSHVTHEVTEDFSPRDPRTVVVKQDGGGCTSVTTALPLPELEREEEKEDISDPMDLNPCSATYSNLGQSRAAMIPPKHPRQPKGALDDAIAFGGKTDQEAPNASQPTPPPLPKKMIIRANTEPISKELQKSLETTLCVMANPTYDIDPNWDASSAGSSISYELKGLDIESYDSLERPLHKERPVPSAANSISSLTTLSIKDRFSNSTESLSSRRGPSCRQGRGIQKPQRQALYRGLENREEVVGKIRSLHADALKKLAIKCEDLFMAGQKDQLRFGVDSWSDFRLTSDKPCCEAGDAVYYTASYAKDPLNNYAVKICKSKAKESQQYYHSLAVRQSLAVHFNIQQDCGHFLAEVPKRLLPWEDPDAPGEEEEEMEAAEEVKGETDGENPEPSSEAESSHKESQAVISRKQRSHVVVITREVPCLTVADFVRDSLAQHGKSPDTYERQVCLLLLQLCSGLEHLKPYHVTHCDLRLENLLLVHYQPGGTSQGPGPVEPGPTSSCPTRLIVSNFSQAKQKSHLVDPEILRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEKEYTRADLPRIPLRSPYSRGLQQLASCLLNPNPSERILISDAKGILQCLLWGPREDLFQTFTASPSPVQRNALLQNWLDIKRTLLMIKFAEKSLDREGGVSLEDWLCAQYLAFATPDSLSCIVKILQPR", "length": 1748, "header": "tr|F1SJ90-1|F1SJ90_PIG Isoform 1 of Inactive tyrosine-protein kinase PEAK1 OS=Sus scrofa OX=9823 GN=PEAK1 PE=3 SV=2 CANONICAL=F1SJ90-1" }, "locus": { "chromosome": "7", "start_pos": 57281585, "end_pos": 57225252, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002094.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002094.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002044.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002044.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1154, "start_aa": "Thr", "end_pos": 1154, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1154", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1546, "start_aa": "Thr", "end_pos": 1546, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1546", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152646", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152646", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013420", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013420", "resource": "Reactome", "description": "RHOU GTPase cycle" }, { "id": "R-SSC-9013424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "resource": "Reactome", "description": "RHOV GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZYR6-1", "protein_name": "Inactive tyrosine-protein kinase PEAK1", "gene_name": "PEAK1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSACNTFTEHVWKPGECKNCFKPKSLHQLPPVSEKKTLSRDNLKTNANQSNSQRGRNTASFRPPVAKKPTIAVKPTMMVADGQGVCGEIGTPDHCENKSVPAGWNRNKAVLHKKPLNNNNEDEIEGYSHVPRPYGSSDGVGKIPNNNNNGLTEVLKEIAGLDTAPQLAGSEMNSRETFLGRINNCYKRSLERKIPPSCMMGGMKDSHSKHVVLSGSTEVISNEGGRFCYPEFSSGDESEDDAFFGSMQEEHESWDESDEELLAMEIRMRGQPRFANFRANTLSPVQFCVDKKWNTVPLRNKSLQRICAVDYDDSYDEILNGYGEETVILYGQESMQSMVSSDSTSPDSSLTEESRSGTASSSSQKLCNGGLSPSTPQDIKSIEPEYESLCDSQQVKDVSKASRNVPKSLETHKAILALRLEEKDGKIAVQTDKQENKSSSDVSGQAVTINLVPVEEQAKPYRVVNMEQPVCKPYTVVDVSAAMTNECKESQTETSEAKNTSSNPSSPVTPGTPIKSSAASPARVNANLKKSSAIRYQEVWTSSTSPRQKIPKVELVANSSGPSVPPRKTSHKSAPTSPTATNVSSKTIPVKSPNLSEIKFNSYNNAGMPPFPIIIHDEPTYAKSSKNAIKVPIVINPNAYDNLAIYKSFLGTSRELSIKDKTTSVISHTYEEIETENKMSEAIGGKPAEAKGVTNSTECRLGSVAQKVQEFNSCLGKSQRSPQRSHSSDHNSPPRIQKTAQEPADVTPEASAPTGSSSRENASTVLSQIVASIQPPQSPPETPQAGPKSCSAEELYSLPPDADAAKSTLVRPKSLFTSQSEVESSKTTESTAIKLQKDAASQPVATNSPKPVRGTPNATSPKTEQAPPFPPPRSTSSPYHASNLLQRHFSNWAKPNSPTRSTEAESILHSEVRRAADAKPKRWISFKSFFRRRKTDDEEDREKEREKGKLVGLDGTVIHMLPPPPVQRHHWFSEAKSDSSEKPSIVFMYRCEPTQTEPKADHQYKSGVESAIADVLAKDKGETQEKSPESPEQKITSHPSPPQILKKIPSASEHCGINGSPEFQDMIKRLKKALKEFPLMGNCVSEYSGQVPDDTTLEDLSPRVPRAVFVKQDNGGSASVIPVSAVRAPQGEEDKGEAPHPSDLNPCSATYSNLGQSRAAMIPPKQPRQPKGALDDAIAFGGIVDQETMNSLQPTPPPLPKKTILRANTEPSPRDLQKQALENNLCIVANPTYDIDTNWEASSACSSVSLELKALDNESGDSLDRPTEKLRTTTSATNSVSSLTTISIKDRCSNSMESLTGRHLSQSKQSRGVQKPQRQALYRGIENREEVVGKIRSLHADSLKKLALKCEDLFMAGQKDQLRFGVDSWSDFRLTSDKPCCEAGDAVYYPASYAKDPLNHYAVKICKSKAKESQQYYHSLSIRQSLAINFNIQQDCGHFLAEVPVRLLPWEDADAPEVEEEQEEEQEPEQKNGGTPSSTEASQKDSSSNQGTISKPRSRVVVITREVPYLTVADFVRESAPRHAKSPDLYERQVCLLLLQLCLGLEHLKPYHITHCDLRLENLLLVHSRPGGGPLSSESVEPGPSTACPARLIVSNFSQAKQKSHMVDPEVLRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEKEYTHADLPKIPCRSLYSQGLQQLASCLLNPNPSERILISEAKGILQCLLWGPREDLFHALRTSSNPARKDAVLQNWLDIKRTLLMIKFAEKSFDRDCGVILEDWLCCQYLAFATVDSLHRIVRIMQRH", "length": 1787 }, "evidence": [ { "id": "F1SJ90", "url": "https://omabrowser.org/oma/group/F1SJ90/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A563-1", "protein_name": "Inactive tyrosine-protein kinase PEAK1", "gene_name": "Peak1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSACNTFTEHVWKPGECKNCFKPKSLHQLPPDSEKAPITHGSVKTNANHSNNHRVRNTGNFRPPVAKKPTIAVKPTMMVADGQSVCGELSIQEHCENKPVILGWNQNRTSLSQKPLNNNSEGDTEGFGSVPQQCANNDRAKTIPNNNGLTEVLKEIAGLDASPPVRGNETNSRETFLGRINDCYKRSLERKIPPSCMTGSTKDSQGKHVILSGSTEVISNEGGRFCYPEFSSGEESEEDVLFSNMEEEHESWDESDEELLAMEIRMRGQPRFANFRANTLSPVRFFVSKKWNTIPLRNKSLQRICAVDYDDSYDEILNGYEENSGVSYGQGSIQSTVSSDSTSPDSSFTEESRSETASSLSQKICNGGISPGNPGNSKDMAETESNSESPPPNNEEKDSSLTSKSPVKVPETHKAVLALRLQEKDGKIAVQTEKPENKASTDIAGQAVTISLVPVEEQTKPYRVVNLEQPLCKPYTVVDVSAAMASEHLGRPKVKGSSSTPNSPVTSPALTPGQINAHLKKSSAIRYQEVWTSSTSPRQKIPKIELSTGGTGPNVPPRKNCHKSAPTSPTATNISSKTIPVKSPNLSEIKFNSYNNAGMPPFPIIIHDEPSYARSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELSVKEKTTSVISHTYEEIETESKVSDSTPSKLADGPPAKGFSSSAERKRGSVAQKVQEFNNCLNRGQSSPQRSYSSTHSSPAKIQRPTQEPVGKTESAQGSQVPGSSGSTREKASAVLCQIVASIQPPQTPPEAPQSSPKACSVDELYAIPPDADTTKNIPKNTPVRPKSLFTSQSSGEGEAHQTTESPTTKTQKDPSTKPVTSPPSKLVTSTQSEPPPPFPPPRSTSSPYHASNLLQRHFTNWTKPTSPTRSTEAESILHSEGSRRAADAKPKRWISFKSFFRRRKTDEEEEKEKEREKGKLVGLDGTVIHMLPPPPVQRHHWFTEAKGESSEKPAIVFMYRCDPDQGHLSVDQSKAGADNGRTEDVLLRNLEEKKNSHPPSQIPDKACSRVTHEVAEELSPRDPRTPAVKQDGTSVTPTLPPPDLEREEEKDATSDPTDVSPCSATYSNLGQSRAAMIPPKHPRHPKGALDDAIAFGEKTDQEVLNASQPTPPPLPKKMIRANTEPIPKDLQKSMESSLCVVANPTYDIDPNWDASSAGSSVSYELKGLDVESYESLERPLHKERPVPSTANSISSLATLSIKDRFSNSMESLSSRRGLSCRQARSIQKPQRQALYRGLDSREEVVGKLRSLHTDALKRLAVKCEDLFMAGQKDQLRFGVDSWSDFRLTSDKPCCEAGDAVYYTASYAKDPLSNYAVKICKSKAKESQQYYHSLAVRQSLPVHFNIQQDCGHFLAEVPNRLLPWEDPNAPEKAEDGNEDSEEEVKAETSGGNPEPCSESESSQKENQQVTNRKQRSHVVVITREVPHLTVADFVRDSLAHHGKSPDLYERQVCLLLLQLCSGLEHLKPYHVTHCDLRLENLLLVQHQPGGATQCPSPADPCPTSACPTRLIVSNFSQAKQKSHLMDPQILRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEKEYTRTDLPRIPLRSPYSWGLQQLASCLLNPNPSERILISDAKGILQCLLWGPREDLFQIFTTSATLVQKNALLQNWLDIKRTLLMIKFAEKSLDREGGISLEDWLCAQYLAFATTDSLSYIVKILQYR", "length": 1733 }, "evidence": [ { "id": "F1SJ90", "url": "https://omabrowser.org/oma/group/F1SJ90/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B8H0-1", "protein_name": "Inactive tyrosine-protein kinase PEAK1", "gene_name": "PEAK1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSACNTFTEHVWKPGECKNCFKPKSLHQLPPDPEKAPITHGNKTNANHSNNHRIRNTGNFRPPVAKKPTIAVKPTMMVADGQSVCGELSIQEHCENKPVVIGWNRNRMALNQKPLNNNNEDDVEGFSHVPKPYGNNDSAKKISNNNNGLTEVLKEIAGLDTTPQIKENETNSRETFLGRINDCYKRSLERKLPPSCMMGGMKDTQGKHVILSGSTEVISNEGGRFCYPEFSSGEESEEDVLLSNMEEEHESWDESDEELLAMEIRMRGQPRFANFRANTLSPVRFFVDKKWNTVPLRNKSLQRICAVDYDDSYDEILNGYEENSVVSYGPGSTQSMVSSDSTSPDSSLTEESRSETASSLSQKICNGGIAPGNPGDSKDMKQSEPNYEGLSGNDQEKDSSQASKSSVKVPETHKAVLALRLEEKDGKIAVQTEKPESKASTDIAGQAVTINLVPVEEQAKPYRVVNLEQPLCKPYTVVDVSAAMASEHLEGHANSPKTKSSSSTPNSPVTSPALTSGHISAHFQKSSAIRYQEVWTSSTSPRQKIPKVELISSGTGPNVPPRKICHKSAPTSPTATNVSSKTIPVKSPNLSEIKFNSYNNAGMPPFPIIIHDEPTYARSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELSVKEKTTSVISHTYEEIETESKASDNATSKPTECPQAKAFSNSTERKRGSVAQKVQEFNSCLNRSQSSPQRSYSSNHSSPAKLQRTTQEPVAKTESTQEPQVVGGGSSTREKASTVLSQMVASIQPPQSPPETPQSGPKACSVEELYAVPPDASAAKTTPKGTPVRPKSLFMSQPSAEAEAPQTTESPTTKAQKDPLTKPVTTPPSKLVTNPQSDPPAPFPPPRSTSSPYHASNLLQRHFTNWTKPTSPTRSTEAESVLHSEGSRRAADAKPKRWISFKSFFRRRKTDEEDDKEKDREKGKLVGLDGTVIHMLPPPPVQRHRWFTEAKGDSSEKPAIVFMYRCDPAQGQLSMDQGKARAEQSAVTEKGGAEEGSLQDSEKKKRSHSSPSQIPKKILSHVTHEVTEDFSPRDPRTVAVKQDGGGCTSVTPALHLPELEREEEKEDISDPIDLNPCSATYSNLGQSRAAMIPPKHPRQPKGALDDVIAFGGKTDQEAPNALQPTPPPLPKKMIIRANTEPLSKDLQKSLETTLCVMANPTYDIDPSWDASSAGSSVSYELKGLDAESYDSLERPLYKERRVPSAANSISSLTTLSIKDRFSNSTESLSSRRGPSGRQGRSIQKPQRQALYRGLENREEVVGKIRSLHTDALKKLAVKCEDLFMAGQKDQLRFGVDSWSDFRLTSDKPCCEAGDAVYYTASYAKDPLNNYAVKICKSKAKESQQYYHSLAIRQSLAVHFNIQQDCGHFLAEVPKRLLPWEDPDAAEEEEDGMEATEEVKGEADGKGPDLGSEAESSHKESQAAVSRKQRSHVVVITREVPCLTVADFVRDSLAQHGKSPDAYERQVCLLLLQLCSGLEHLKPYHVTHCDLRLENLLLVHYQPGGPTQGLGPAEPSPTPSCPTRLIVSNFSQAKQKSHLVDPEILRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEKEYTRADLPRIPLRSPYSRGLQQLASCLLNPNPSERILISDAKGILQCLLWGPREDLFQTFTASPSPAHRNTLLQNWLDIKRTLLMIKFAEKSLDREGGVTLEDWLCAQYLAFATPDSLSCVVRILQPR", "length": 1747 }, "evidence": [ { "id": "F1SJ90", "url": "https://omabrowser.org/oma/group/F1SJ90/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q69Z38-1", "protein_name": "Inactive tyrosine-protein kinase PEAK1", "gene_name": "Peak1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSACNTFTEHVWKPGECKNCFKPKSLHQLPPDSEKTPITHGSGKTNANHSNNHRVRSTGNFRPPVAKKPTIAVKPTMMVADGQSVCGELSIQEHCENKPVILGWNQNKTSLSQKPLNNNSEGDAEGFGSDPQQCANNDSAQKISNNNNGLTEVLKEIAGLEATPPVRGNETNARETFLGRINDCYKRSLERKIPPSCMTGSMKDSQGKHVILSGSAEVISNEGGRFCYPEFSSGEESEEDVLFSNMEEEHESWDESDEELLAMEIRMRGQPRFANFRANTLSPVRFFVSKKWNTIPLRNKSLQRICAVDYDDSYDEILNGYEENSGVSYGQGSVQSTISSDCTSPGSSFTEESRSETASSLSQKVCNGGISPGNPGNSKDIAETESNFESPPGNNEEKDESLTSKSSVKVPETHKAVLALRLQEKDGKIAVHTEKPESKASTDIAGQAVTISLVPVEEQTKPYRVVNLEQPLCKPYTVVDVSAAMASEHLGRPKIKGSSSTPNSPVTSPALTPGQINAHLKKSSAIRYQEVWTSSTSPRQKIPKIELSTGGPGPNVPPRKNCHKSAPTSPTATNISSKTIPVKSPNLSEIKFNSYNNAGMPPFPIIIHDEPSYARSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELSVKEKTTSVISHTYEEIETESKVSDSTPSKLTDCPQAKGFSNSTERKRGSVAQKVQEFNNCLNRGQSSPQRSYSSTHSSPAKIQRPTQEPAGKTEGAQGSQVPGSSSNSTREKASAVLCQIVASIQPPQTPPEAPQSSPKACSVEELYAVPPDADTTKSIPKNPPVRPKSLFTSQSSGEGEAHQTTESPTAKIQKDPSTKPVTSPPSKLVTSAQSEPPPPFPPPRSTSSPYHASNLLQRHFTNWTKPTSPTRSTEAESILHSEGSRRAADAKPKRWISFKSFFRRRKTDEEEEKEKEREKGKLVGLDGTVIHMLPPPPVQRHHWFTEAKGEASEKPAIVFMYRCDPDQGHLSVDQSKAGAEKGRAEEVLLRNSEEKKSSYLPSQIPDKACSRVTHEVAGELSPRDPRTPAGKQDGTSVTPTLPPPDLEREEEKDDTLDPTDVSPCSATYSNLGQSRAAMIPPKHPRHPKGAVDDAIAFGEKTDQEGLNASQPTPPPLPKKMIRANTEPISKDLQKAMESSLCVMANPTYDIDPNWDASSAGSSISYELKGLDVESYESLERPLHKERPVPSAANSISSLATLSVKDRFSNSMESLSSRRGLSYRQTRSIQKPQRQALYRGLDNREEVVGKLRSLHTDALKRLAVKCEDLFMAGQKDQLRFGVDSWSDFRLTSDKPCCEAGDAVYYTASYAKDPLSNYAVKICKSKAKESQQYYHSLAVRQSLPVHFNIQQDCGHFLAEVPSRLLPWEDPDAPEKAEDGTEDSEEEGKAETLGGNPEPCSETEPSQKENQRVTNRKQRSHVVVITREVPHLTVADFVRDSLAHHGNSPDLYERQVCLLLLQLCSGLEHLKPYHVTHCDLRLENLLLVQHQPGGAAQGPSPADPCPTLACPTRLIVSNFSQAKQKSHLVDPQILRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEKEYTRTDLPRIPLRSPYSWGLQQLASCLLNPNPSERILISDAKGILQCLLWGPREDLFQIFTTSATLAQKNALLQNWLDIKRTLLMIKFAEKSLDREGGISLEDWLCAQYLAFATTDSLSYIVKILQYR", "length": 1735 }, "evidence": [ { "id": "F1SJ90", "url": "https://omabrowser.org/oma/group/F1SJ90/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H792-1", "protein_name": "Inactive tyrosine-protein kinase PEAK1", "gene_name": "PEAK1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSACNTFTEHVWKPGECKNCFKPKSLHQLPPDPEKAPITHGNVKTNANHSNNHRIRNTGNFRPPVAKKPTIAVKPTMIVADGQSICGELSIQEHCENKPVIIGWNRNRAALSQKPLNNNNEDDEGISHVPKPYGNNDSAKKMSDNNNGLTEVLKEIAGLDTAPQIRGNETNSRETFLGRINDCYKRSLERKLPPSCMIGGIKETQGKHVILSGSTEVISNEGGRFCYPEFSSGEESEEDVLFSNMEEEHESWDESDEELLAMEIRMRGQPRFANFRANTLSPVRFFVDKKWNTIPLRNKSLQRICAVDYDDSYDEILNGYEENSVVSYGQGSIQSMVSSDSTSPDSSLTEESRSETASSLSQKICNGGLSPGNPGDSKDMKEIEPNYESPSSNNQDKDSSQASKSSIKVPETHKAVLALRLEEKDGKIAVQTEKEESKASTDVAGQAVTINLVPTEEQAKPYRVVNLEQPLCKPYTVVDVSAAMASEHLEGPVNSPKTKSSSSTPNSPVTSSSLTPGQISAHFQKSSAIRYQEVWTSSTSPRQKIPKVELITSGTGPNVPPRKNCHKSAPTSPTATNISSKTIPVKSPNLSEIKFNSYNNAGMPPFPIIIHDEPTYARSSKNAIKVPIVINPNAYDNLAIYKSFLGTSGELSVKEKTTSVISHTYEEIETESKVPDNTTSKTTDCLQTKGFSNSTEHKRGSVAQKVQEFNNCLNRGQSSPQRSYSSSHSSPAKIQRATQEPVAKIEGTQESQMVGSSSTREKASTVLSQIVASIQPPQSPPETPQSGPKACSVEELYAIPPDADVAKSTPKSTPVRPKSLFTSQPSGEAEAPQTTDSPTTKVQKDPSIKPVTPSPSKLVTSPQSEPPAPFPPPRSTSSPYHAGNLLQRHFTNWTKPTSPTRSTEAESVLHSEGSRRAADAKPKRWISFKSFFRRRKTDEEDDKEKEREKGKLVGLDGTVIHMLPPPPVQRHHWFTEAKGESSEKPAIVFMYRCDPAQGQLSVDQSKARTDQAAVMEKGRAENALLQDSEKKRSHSSPSQIPKKILSHMTHEVTEDFSPRDPRTVVGKQDGRGCTSVTTALSLPELEREDGKEDISDPMDPNPCSATYSNLGQSRAAMIPPKQPRQPKGAVDDAIAFGGKTDQEAPNASQPTPPPLPKKMIIRANTEPISKDLQKSMESSLCVMANPTYDIDPNWDASSAGSSISYELKGLDIESYDSLERPLRKERPVPSAANSISSLTTLSIKDRFSNSMESLSSRRGPSCRQGRGIQKPQRQALYRGLENREEVVGKIRSLHTDALKKLAVKCEDLFMAGQKDQLRFGVDSWSDFRLTSDKPCCEAGDAVYYTASYAKDPLNNYAVKICKSKAKESQQYYHSLAVRQSLAVHFNIQQDCGHFLAEVPNRLLPWEDPDDPEKDEDDMEETEEDAKGETDGKNPKPCSEAASSQKENQGVMSKKQRSHVVVITREVPCLTVADFVRDSLAQHGKSPDLYERQVCLLLLQLCSGLEHLKPYHVTHCDLRLENLLLVHYQPGGTAQGFGPAEPSPTSSYPTRLIVSNFSQAKQKSHLVDPEILRDQSRLAPEIITATQYKKCDEFQTGILIYEMLHLPNPFDENPELKEREYTRADLPRIPFRSPYSRGLQQLASCLLNPNPSERILISDAKGILQCLLWGPREDLFQTFTACPSLVQRNTLLQNWLDIKRTLLMIKFAEKSLDREGGISLEDWLCAQYLAFATTDSLSCIVKILQHR", "length": 1746 }, "evidence": [ { "id": "F1SJ90", "url": "https://omabrowser.org/oma/group/F1SJ90/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of focal adhesion assembly", "id": "GO:0051893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051893", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" }, { "name": "regulation of cell motility", "id": "GO:2000145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000145", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" }, { "name": "substrate adhesion-dependent cell spreading", "id": "GO:0034446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034446", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" }, { "name": "focal adhesion assembly", "id": "GO:0048041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048041", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" }, { "name": "non-membrane spanning protein tyrosine kinase activity", "id": "GO:0004715", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004715", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "F1SJ90", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1149, "end_pos": 1151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1252, "end_pos": 1254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 136, "end_pos": 138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1557, "end_pos": 1559, "annotation": "n_glycosylation_sequon" }, { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 577, "end_pos": 579, "annotation": "n_glycosylation_sequon" }, { "start_pos": 589, "end_pos": 591, "annotation": "n_glycosylation_sequon" }, { "start_pos": 677, "end_pos": 679, "annotation": "n_glycosylation_sequon" }, { "start_pos": 693, "end_pos": 695, "annotation": "n_glycosylation_sequon" }, { "start_pos": 756, "end_pos": 758, "annotation": "n_glycosylation_sequon" }, { "start_pos": 894, "end_pos": 896, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ90" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 1316, "end_pos": 1677, "start_aa": "Gln", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1154, 1546 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 1149, "end_pos": 1151 }, { "start_pos": 1252, "end_pos": 1254 }, { "start_pos": 136, "end_pos": 138 }, { "start_pos": 1557, "end_pos": 1559 }, { "start_pos": 168, "end_pos": 170 }, { "start_pos": 298, "end_pos": 300 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 577, "end_pos": 579 }, { "start_pos": 589, "end_pos": 591 }, { "start_pos": 677, "end_pos": 679 }, { "start_pos": 693, "end_pos": 695 }, { "start_pos": 756, "end_pos": 758 }, { "start_pos": 894, "end_pos": 896 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ97-1", "uniprot_ac": "F1SJ97", "uniprot_id": "F1SJ97_PIG", "mass": { "chemical_mass": 31357.0, "monoisotopic_mass": 31357.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100513800", "type": "recommended", "evidence": [ { "id": "F1SJ97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ97" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJ97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ97/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ97", "url": "https://www.uniprot.org/uniprotkb/F1SJ97#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ97", "url": "https://www.uniprot.org/uniprotkb/F1SJ97" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100513800", "url": "https://www.uniprot.org/uniprotkb/F1SJ97", "locus": {} } ], "crossref": [ { "id": "F1SJ97", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ97", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035558", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035558", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15226", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15226", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJ97", "url": "https://www.uniprot.org/uniprotkb/F1SJ97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ97-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ97-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQENKSGVTEFVLHGLSGPRELQLFYFAFFTLFNLSFIDVCLSTFATPKMIVDFLEEHRTISFEGCMAQIFFLHVFAGGEMMLLVAMAYDRYVAICRPLHYATIMSERRCTSLVVGSWLIGILHSVSQLVFTVNLPFCGPNQVDSFFCDLPLVIKLACTDTFTLEVLMLSDSGLIAMSSFVLLLVSYMVILVTVQRRSSAGMAKARATLTAHITVVTLFFGPCIFIYAWPFNNLPVDKVLSIFYTVFTPLLNPLIYTLRNKEVISAMQKLRHREVSS", "length": 278, "header": "tr|F1SJ97-1|F1SJ97_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100513800 PE=3 SV=4 CANONICAL=F1SJ97-1" }, "isoforms": [ { "isoform_ac": "F1SJ97-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ97/entry#F1SJ97-1", "sequence": { "sequence": "MDQENKSGVTEFVLHGLSGPRELQLFYFAFFTLFNLSFIDVCLSTFATPKMIVDFLEEHRTISFEGCMAQIFFLHVFAGGEMMLLVAMAYDRYVAICRPLHYATIMSERRCTSLVVGSWLIGILHSVSQLVFTVNLPFCGPNQVDSFFCDLPLVIKLACTDTFTLEVLMLSDSGLIAMSSFVLLLVSYMVILVTVQRRSSAGMAKARATLTAHITVVTLFFGPCIFIYAWPFNNLPVDKVLSIFYTVFTPLLNPLIYTLRNKEVISAMQKLRHREVSS", "length": 278, "header": "tr|F1SJ97-1|F1SJ97_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100513800 PE=3 SV=4 CANONICAL=F1SJ97-1" }, "locus": { "chromosome": "AEMK02000661.1", "start_pos": 523511, "end_pos": 522588, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014407.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014407.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014017.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014017.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ97", "url": "https://www.uniprot.org/uniprotkb/F1SJ97" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJ97", "url": "https://www.uniprot.org/uniprotkb/F1SJ97" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJ97", "url": "https://www.uniprot.org/uniprotkb/F1SJ97" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ97", "url": "https://www.uniprot.org/uniprotkb/F1SJ97" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ97-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 278, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ97-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ97" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ97", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ97" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 257, "start_aa": "Val", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 35, "end_pos": 37 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJ98-1", "uniprot_ac": "F1SJ98", "uniprot_id": "F1SJ98_PIG", "mass": { "chemical_mass": 31435.0, "monoisotopic_mass": 31435.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100516985", "type": "recommended", "evidence": [ { "id": "F1SJ98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ98" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJ98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ98/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ98", "url": "https://www.uniprot.org/uniprotkb/F1SJ98#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJ98", "url": "https://www.uniprot.org/uniprotkb/F1SJ98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100516985", "url": "https://www.uniprot.org/uniprotkb/F1SJ98", "locus": {} } ], "crossref": [ { "id": "F1SJ98", "url": "https://alphafold.ebi.ac.uk/entry/F1SJ98", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013186", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013186", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15226", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15226", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJ98", "url": "https://www.uniprot.org/uniprotkb/F1SJ98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJ98-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLKNGSVFVFLVTFSLIYGATVLGNVLIMVTVTFSSTLHSPMYFLLGNLSFLDMCLSTVTTPKMIRDLLTEHKVISMWGCMAQMFFMHCFGGAEVTLLVAMAFDRYVAICKPLHYRTIMSHKLLKGFVILSWTIGFIHTMSQMVLTVNLPFCGPHIIDNIFCDLPLVIKLACMDTYTLELFIIADSGLLSFICFLLLLVSYTVILVTVQQRSSGGLSKALSTLSAHITVVTLFFGSFAGNKILSVFYTVVTPLLNPIIYTLRNEKMLVIFCCYSKQSLIGL", "length": 282, "header": "tr|F1SJ98-1|F1SJ98_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100516985 PE=3 SV=4 CANONICAL=F1SJ98-1" }, "isoforms": [ { "isoform_ac": "F1SJ98-1", "url": "https://www.uniprot.org/uniprotkb/F1SJ98/entry#F1SJ98-1", "sequence": { "sequence": "MDLKNGSVFVFLVTFSLIYGATVLGNVLIMVTVTFSSTLHSPMYFLLGNLSFLDMCLSTVTTPKMIRDLLTEHKVISMWGCMAQMFFMHCFGGAEVTLLVAMAFDRYVAICKPLHYRTIMSHKLLKGFVILSWTIGFIHTMSQMVLTVNLPFCGPHIIDNIFCDLPLVIKLACMDTYTLELFIIADSGLLSFICFLLLLVSYTVILVTVQQRSSGGLSKALSTLSAHITVVTLFFGSFAGNKILSVFYTVVTPLLNPIIYTLRNEKMLVIFCCYSKQSLIGL", "length": 282, "header": "tr|F1SJ98-1|F1SJ98_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100516985 PE=3 SV=4 CANONICAL=F1SJ98-1" }, "locus": { "chromosome": "AEMK02000222.1", "start_pos": 12709, "end_pos": 11044, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014406.4", "url": "https://www.ensembl.org/id/ENSSSCT00000014406.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014016.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014016.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJ98", "url": "https://www.uniprot.org/uniprotkb/F1SJ98" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJ98", "url": "https://www.uniprot.org/uniprotkb/F1SJ98" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJ98", "url": "https://www.uniprot.org/uniprotkb/F1SJ98" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJ98", "url": "https://www.uniprot.org/uniprotkb/F1SJ98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJ98-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 282, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJ98-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJ98" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJ98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJ98" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 235, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 49, "end_pos": 51 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJA3-1", "uniprot_ac": "F1SJA3", "uniprot_id": "F1SJA3_PIG", "mass": { "chemical_mass": 54791.0, "monoisotopic_mass": 54791.0 }, "refseq": { "ac": "XP_003122012", "name": "carnosine N-methyltransferase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122012" }, "gene_names": [ { "name": "CARNMT1", "type": "recommended", "evidence": [ { "id": "F1SJA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ] }, { "name": "CARNMT1", "type": "synonym", "evidence": [ { "id": "XP_003122012", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122012" } ] } ], "protein_names": [ { "name": "Carnosine N-methyltransferase", "type": "recommended", "evidence": [ { "id": "F1SJA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJA3/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.22", "type": "synonym", "evidence": [ { "id": "F1SJA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJA3/entry#names_and_taxonomy" } ] }, { "name": "carnosine N-methyltransferase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003122012", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122012" } ] } ], "function": [ { "annotation": "N-methyltransferase that catalyzes the formation of anserine (beta-alanyl-N(Pi)-methyl-L-histidine) from carnosine. Anserine, a methylated derivative of carnosine (beta-alanyl-L-histidine), is an abundant constituent of vertebrate skeletal muscles. Also methylates other L-histidine-containing di- and tripeptides such as Gly-Gly-His, Gly-His and homocarnosine (GABA-His).", "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3#function" }, { "database": "UniProtKB", "id": "ARBA00054322", "url": "https://www.uniprot.org/uniprotkb/ARBA00054322#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CARNMT1", "url": "https://www.uniprot.org/uniprotkb/F1SJA3", "locus": { "chromosome": "1", "start_pos": 228054915, "end_pos": 228092263, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005271", "url": "https://www.ensembl.org/id/ENSSSCG00000005271" } ] } } ], "crossref": [ { "id": "F1SJA3", "url": "https://alphafold.ebi.ac.uk/entry/F1SJA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005271", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005271", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518712", "url": "https://www.ncbi.nlm.nih.gov/gene/100518712", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518712", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518712", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJA3", "url": "https://www.orthodb.org/?gene=F1SJA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12303", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12303", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12303:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12303:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07942", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07942", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70921", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70921", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003122012", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003122012", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJA3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRMRACSGRSEDLAEPGADGGLRAAGVERIASWGHVRGGRRLEEGRAAATTLSVAARRKRARPRAEAAMQRRRRPPPPASQLPEGCGGGGCGRGGGNGSEEVEVQFSAGRLGSAVAVSAAAAVAHSTEEEEERLEREHFWKIINAFRYYGTSMHERVHRTERQFRSLPANQQKLLPQFLLHLDKIRKCIDHNQEILLTIVNDCIHMFENKEYGEDGNGKIMPASTFDMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPIFFPDVDPHSLPPGSNFSMTAGDFQEIYSECNTWDCIATCFFIDTAHNVIDYIDTIWKILKPGGIWINLGPLLYHFENLANELSIELSYEDIRNVVLQYGFQVEVEKESVLSTYTVNDLSMMKYYYECVLFVVRKPH", "length": 482, "header": "tr|F1SJA3-1|F1SJA3_PIG Isoform 1 of Carnosine N-methyltransferase OS=Sus scrofa OX=9823 GN=CARNMT1 PE=3 SV=3 CANONICAL=F1SJA3-1" }, "isoforms": [ { "isoform_ac": "F1SJA3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJA3/entry#F1SJA3-1", "sequence": { "sequence": "MRMRACSGRSEDLAEPGADGGLRAAGVERIASWGHVRGGRRLEEGRAAATTLSVAARRKRARPRAEAAMQRRRRPPPPASQLPEGCGGGGCGRGGGNGSEEVEVQFSAGRLGSAVAVSAAAAVAHSTEEEEERLEREHFWKIINAFRYYGTSMHERVHRTERQFRSLPANQQKLLPQFLLHLDKIRKCIDHNQEILLTIVNDCIHMFENKEYGEDGNGKIMPASTFDMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGRLAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPIFFPDVDPHSLPPGSNFSMTAGDFQEIYSECNTWDCIATCFFIDTAHNVIDYIDTIWKILKPGGIWINLGPLLYHFENLANELSIELSYEDIRNVVLQYGFQVEVEKESVLSTYTVNDLSMMKYYYECVLFVVRKPH", "length": 482, "header": "tr|F1SJA3-1|F1SJA3_PIG Isoform 1 of Carnosine N-methyltransferase OS=Sus scrofa OX=9823 GN=CARNMT1 PE=3 SV=3 CANONICAL=F1SJA3-1" }, "locus": { "chromosome": "1", "start_pos": 228092246, "end_pos": 228057453, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005806.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005806.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005662.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005662.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518712", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518712", "resource": "KEGG Pathway" }, { "id": "R-SSC-70921", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70921", "resource": "Reactome", "description": "Histidine catabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ], "pmid": "" }, { "name": "carnosine N-methyltransferase activity", "id": "GO:0030735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030735", "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ], "pmid": "" }, { "name": "protein-L-histidine N-pros-methyltransferase activity", "id": "GO:0106370", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106370", "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ], "pmid": "" }, { "name": "carnosine metabolic process", "id": "GO:0035498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035498", "evidence": [ { "database": "UniProtKB", "id": "F1SJA3", "url": "https://www.uniprot.org/uniprotkb/F1SJA3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-8876789", "name": "CARNMT1 methylates CARN to Anserine", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-6786250" ], "output_participant_list": [ "R-ALL-8876775" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8876789", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876789" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-6786250", "participant_name": "CARN [cytosol]", "crossref": [ { "id": "57485", "database": "ChEBI", "url": "" }, { "id": "ZINC000002040854", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-8876775", "participant_name": "Anserine [cytosol]", "crossref": [ { "id": "ZINC000001532910", "database": "ZINC", "url": "" }, { "id": "58445", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJA3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 482, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJA3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJA3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 361, "end_pos": 363 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJA8-1", "uniprot_ac": "F1SJA8", "uniprot_id": "F1SJA8_PIG", "mass": { "chemical_mass": 24954.0, "monoisotopic_mass": 24954.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ferritin", "type": "recommended", "evidence": [ { "id": "F1SJA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJA8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney. Delivery to lysosomes by the cargo receptor NCOA4 for autophagic degradation and release or iron.", "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8#function" }, { "database": "UniProtKB", "id": "ARBA00045578", "url": "https://www.uniprot.org/uniprotkb/ARBA00045578#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SJA8", "locus": {} } ], "crossref": [ { "id": "F1SJA8", "url": "https://alphafold.ebi.ac.uk/entry/F1SJA8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016649", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016649", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009078", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009078", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WACIFSK", "url": "https://omabrowser.org/oma/group/WACIFSK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11431", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11431", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11431:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11431:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJA8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJA8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "STRSSQIRQTYSTRVEADVDHLVVHLQPSYTYLSLGFYLDCVDEALEGVGHFFHRLAEKRKGTEPLLKMQNRRSDHALFQDVQKPSEDEGGKTQDALEAALFMEKNLTQALLDLHALGSARTDPRLCDFLESHFLDGQVKLIKKMGNHLTNFCNVATPRQDWACIFSKGSFSNMTRSLWSPPPLRSSSGVRSSDSSPRLQPLGSFLTTLEPSPQAWTKWKQ", "length": 221, "header": "tr|F1SJA8-1|F1SJA8_PIG Isoform 1 of Ferritin OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SJA8-1" }, "isoforms": [ { "isoform_ac": "F1SJA8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJA8/entry#F1SJA8-1", "sequence": { "sequence": "STRSSQIRQTYSTRVEADVDHLVVHLQPSYTYLSLGFYLDCVDEALEGVGHFFHRLAEKRKGTEPLLKMQNRRSDHALFQDVQKPSEDEGGKTQDALEAALFMEKNLTQALLDLHALGSARTDPRLCDFLESHFLDGQVKLIKKMGNHLTNFCNVATPRQDWACIFSKGSFSNMTRSLWSPPPLRSSSGVRSSDSSPRLQPLGSFLTTLEPSPQAWTKWKQ", "length": 221, "header": "tr|F1SJA8-1|F1SJA8_PIG Isoform 1 of Ferritin OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SJA8-1" }, "locus": { "chromosome": "18", "start_pos": 33935413, "end_pos": 33934751, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018127.3", "url": "https://www.ensembl.org/id/ENSSSCT00000018127.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017637.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017637.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" } ], "pmid": "" }, { "name": "autolysosome", "id": "GO:0044754", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044754", "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular iron ion homeostasis", "id": "GO:0006879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006879", "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" } ], "pmid": "" }, { "name": "iron ion transport", "id": "GO:0006826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006826", "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ferrous iron binding", "id": "GO:0008198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008198", "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" } ], "pmid": "" }, { "name": "ferric iron binding", "id": "GO:0008199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008199", "evidence": [ { "database": "UniProtKB", "id": "F1SJA8", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJA8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 221, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJA8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJA8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" }, { "id": "PS50905", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50905" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ferritin-like diiron", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 156, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "F1SJA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJA8#function" }, { "id": "F1SJA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" }, { "id": "PIRSR601519-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR601519-1" } ], "binding_site_uniprot": 104, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_24875", "ligand": "Fe cation", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 104, "end_pos": 104, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SJA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJA8#function" }, { "id": "F1SJA8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJA8" }, { "id": "PIRSR601519-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR601519-1" } ], "binding_site_uniprot": 138, "amino_acid": "Gln", "chebi_lig_id": "CHEBI_24875", "ligand": "Fe cation", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 138, "end_pos": 138, "start_aa": "Gln", "end_aa": "Gln", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 173, "end_pos": 175 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJC2-1", "uniprot_ac": "F1SJC2", "uniprot_id": "F1SJC2_PIG", "mass": { "chemical_mass": 122836.0, "monoisotopic_mass": 122836.0 }, "refseq": { "ac": "XP_003360205", "name": "protein phosphatase 1 regulatory subunit 3A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360205" }, "gene_names": [ { "name": "PPP1R3A", "type": "recommended", "evidence": [ { "id": "F1SJC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" } ] }, { "name": "PPP1R3A", "type": "synonym", "evidence": [ { "id": "XP_003360205", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360205" } ] } ], "protein_names": [ { "name": "Protein phosphatase 1 regulatory subunit 3A", "type": "recommended", "evidence": [ { "id": "F1SJC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJC2/entry#names_and_taxonomy" } ] }, { "name": "Protein phosphatase 1 glycogen-associated regulatory subunit", "type": "synonym", "evidence": [ { "id": "F1SJC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJC2/entry#names_and_taxonomy" } ] }, { "name": "Protein phosphatase type-1 glycogen targeting subunit", "type": "synonym", "evidence": [ { "id": "F1SJC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJC2/entry#names_and_taxonomy" } ] }, { "name": "protein phosphatase 1 regulatory subunit 3A", "type": "synonym", "evidence": [ { "id": "XP_003360205", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360205" } ] } ], "function": [ { "annotation": "Seems to act as a glycogen-targeting subunit for PP1. PP1 is essential for cell division, and participates in the regulation of glycogen metabolism, muscle contractility and protein synthesis. Plays an important role in glycogen synthesis but is not essential for insulin activation of glycogen synthase.", "evidence": [ { "database": "UniProtKB", "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2#function" }, { "database": "UniProtKB", "id": "ARBA00058944", "url": "https://www.uniprot.org/uniprotkb/ARBA00058944#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP1R3A", "url": "https://www.uniprot.org/uniprotkb/F1SJC2", "locus": { "chromosome": "18", "start_pos": 32039852, "end_pos": 31997713, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016640", "url": "https://www.ensembl.org/id/ENSSSCG00000016640" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016640", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016640", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22255", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22255", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518588", "url": "https://www.ncbi.nlm.nih.gov/gene/100518588", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518588", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518588", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DCWELPS", "url": "https://omabrowser.org/oma/group/DCWELPS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJC2", "url": "https://www.orthodb.org/?gene=F1SJC2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12307", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12307", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12307:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12307:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03370", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03370", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003360205", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360205", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJC2-1", "url": "https://www.uniprot.org/uniprotkb/F1SJC2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPSEEPSHISKDNFLEVPNLSDSLSEDEEIKANFRPGFSPQPSRRGSDSSEDIYLDTPPPSGARRVSFADTFGFNLVSVKEFDSWELPSSSTDFDLTKDIFHTEEYVLTPLFDLPSSKEDLMQQLQVQKAILESAEYPPGSTSMKGIIRVLNISFEKLVYVRMSLDDWQTYYDILAEYVPNSCDGDTDQFSFKISLVPPYQKDGSKVEFCIRYETSVGTFWSNNNGTNYILVCQKKEQEMEPVKPQEDVPNRHIKGCLKVKSSKEESSVPSEENNFENSKITDTYIPTIVCSDEDKEDLETGNQNVKDVNREHDEHNEKELELMINQHLIRSTASRDEKNIVNFPNKAEGLEKKEIHDEVFTDLFKRPLSSSSSAERSLKGDSYPNEQYPSGNEGSHQPSEGISSDMGEIKPSLGNTSSDELVQLHIGSKEVLDDNANPAQGRGRVKISHLFSDQIMAENCNKKLEEEAKKIEMKDWECLRRDFHSEFHSEESTEKGSSKKDYDSGKNEEEEQRIHLGVNEKQRKKFPSTLHDQERKTGHSEISVEGMGASTRDLTALPSKDTTIHGQAIRADIFHSPRTNLSWEEAVLTTPDCDLSTREGISLGGILGQACSPRNGNVLRNKHLFQAEEEQSDCIKPEDQHKNTQHKQNQNVLESQGKARENRTNITEQTKEQADCEDMWKKRDNTRILKATPTEKLFTCQETASYELSSLADHGITEKVEAGTAYIIKTTSESTLESMSAREKAIIAKLPQETARSDRPIEVKETAFDPHEGRNDSRDNLCQRDTVGVTYDNDFEKESCLGICNVHIDETEKEETISVYNSGKTHDRKKRDVGNTTSVEESSQGIIDNQKADSKLDLHLEMLPIGKKIFTENKDPGQVQELSKKTNIDAVIHSALNSGTNGASQNGSHVSNHHAKNSVPTHEQEAAAENENTTTTPQSISSKSEYNCNPTREIQGIDKHPHPMTTPEDVSKSSGIVTSGSWKERCTGQISQQGECSVETSLGPTILTSEALENKEEARHENEGLINSGQSLCSSGDKESESSASSSLPAQESQAQSSESLLSKYINSKIPYFLLFLIFLVTVYQYDLMIGWAF", "length": 1096, "header": "tr|F1SJC2-1|F1SJC2_PIG Isoform 1 of Protein phosphatase 1 regulatory subunit 3A OS=Sus scrofa OX=9823 GN=PPP1R3A PE=1 SV=3 CANONICAL=F1SJC2-1" }, "isoforms": [ { "isoform_ac": "F1SJC2-1", "url": "https://www.uniprot.org/uniprotkb/F1SJC2/entry#F1SJC2-1", "sequence": { "sequence": "MEPSEEPSHISKDNFLEVPNLSDSLSEDEEIKANFRPGFSPQPSRRGSDSSEDIYLDTPPPSGARRVSFADTFGFNLVSVKEFDSWELPSSSTDFDLTKDIFHTEEYVLTPLFDLPSSKEDLMQQLQVQKAILESAEYPPGSTSMKGIIRVLNISFEKLVYVRMSLDDWQTYYDILAEYVPNSCDGDTDQFSFKISLVPPYQKDGSKVEFCIRYETSVGTFWSNNNGTNYILVCQKKEQEMEPVKPQEDVPNRHIKGCLKVKSSKEESSVPSEENNFENSKITDTYIPTIVCSDEDKEDLETGNQNVKDVNREHDEHNEKELELMINQHLIRSTASRDEKNIVNFPNKAEGLEKKEIHDEVFTDLFKRPLSSSSSAERSLKGDSYPNEQYPSGNEGSHQPSEGISSDMGEIKPSLGNTSSDELVQLHIGSKEVLDDNANPAQGRGRVKISHLFSDQIMAENCNKKLEEEAKKIEMKDWECLRRDFHSEFHSEESTEKGSSKKDYDSGKNEEEEQRIHLGVNEKQRKKFPSTLHDQERKTGHSEISVEGMGASTRDLTALPSKDTTIHGQAIRADIFHSPRTNLSWEEAVLTTPDCDLSTREGISLGGILGQACSPRNGNVLRNKHLFQAEEEQSDCIKPEDQHKNTQHKQNQNVLESQGKARENRTNITEQTKEQADCEDMWKKRDNTRILKATPTEKLFTCQETASYELSSLADHGITEKVEAGTAYIIKTTSESTLESMSAREKAIIAKLPQETARSDRPIEVKETAFDPHEGRNDSRDNLCQRDTVGVTYDNDFEKESCLGICNVHIDETEKEETISVYNSGKTHDRKKRDVGNTTSVEESSQGIIDNQKADSKLDLHLEMLPIGKKIFTENKDPGQVQELSKKTNIDAVIHSALNSGTNGASQNGSHVSNHHAKNSVPTHEQEAAAENENTTTTPQSISSKSEYNCNPTREIQGIDKHPHPMTTPEDVSKSSGIVTSGSWKERCTGQISQQGECSVETSLGPTILTSEALENKEEARHENEGLINSGQSLCSSGDKESESSASSSLPAQESQAQSSESLLSKYINSKIPYFLLFLIFLVTVYQYDLMIGWAF", "length": 1096, "header": "tr|F1SJC2-1|F1SJC2_PIG Isoform 1 of Protein phosphatase 1 regulatory subunit 3A OS=Sus scrofa OX=9823 GN=PPP1R3A PE=1 SV=3 CANONICAL=F1SJC2-1" }, "locus": { "chromosome": "18", "start_pos": 32035664, "end_pos": 31997726, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018118.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018118.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017628.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017628.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518588", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518588", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IIM0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3A", "gene_name": "Ppp1r3a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEPAEEPGQISKDNFLEVPNVSDSVCEDEEVKATFKPGFSPQPSRRGSGSSEDTYLDTPTSASRRVSFADSLGFNLVSIKEFDCWELPSVSTDFGLSRDIFHTEEYILSPLFDLPSSKEELMEQLQVQKAMLESTEYLPGSTSVKGIIRVLNISFEKLVYVRMSLDAWQTHYDILAEYVPNSCDGKTDQFSFKISLVPPYQKDGSKVEFCIRYETSVGTFWSNNNGTNYVLVCQKKKKEPEPVKPLEEAPNRQIKGCLKVKSSSKEESSLTSEENKLETFKFTDAYVPTIICSHEDKDDLGASHQNVEDINREHDGHNEKELDLMIHPPLIISRDEKNTFSTDSVNWTNKAEGSEKKQEYHEIHTGLFRRQLSPSLPEEISLKKDSYHSRNYSPGNEYGHPPSEEIMSHAGEMEQLLGDSSADELMQQNLCSQEVLDDNANPAHGSDKVQIACSSYDHLMTDGLNKNNETGVKKTGIKDHKYSRSDFYLEASTNLEESNASPKDDYTKGNDEEEENTCLGVNENQRKNFQSVFHNQERQMGHPEISIEGTKASNEDLTTLLSKDTTTTTWRARVDLSPSTKTKVNWRETGKGTTLEPIATHLGSPRNGNVLTGSYLLQAAREKSDPSNPEDQNMNTQYKKNWNVLESQPETRGIETNTAKQIKEQAECKDMWEKRDNKRSLKATPTEPLFTCQETECYELSSLADHGITEKAQAVTAYIIKTTLERTPESMSARGNTIIAKLPQETARSDRPIEVKETAFDPHEGRKDDSHYTLCHGDTAGVIHDNDFERESHLAVCDVHVEEMEKEATTSTCYPRKTHDKEKCGIGIVTSTDKSSEVITGNHKATSKLDLHLGVLPTDKAIFPENKDHELLEELSRRTDFDAVHPEFNSDASSTSQGSPQVYRCQSKNSEPTSGWLFAEDNAGTSTTLRSILTKSEYTCCPESETLGHAMSKPDDVSKTLEITESGNGRERPVGPILQQKEGKSMQKSQGPIILVSEPLENLEEAKSDIEGLIHFEQSQRYLDDTGSESPPSATLPPQEAQAQGRESLLSTYVNSKLPYFLLFLIFLATIYYYDLMVGLAFYLFSLYWLYWEGGRHKESVKKK", "length": 1104 }, "evidence": [ { "id": "F1SJC2", "url": "https://omabrowser.org/oma/group/F1SJC2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0X902-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3A", "gene_name": "PPP1R3A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MESFEGPSRVSKANLLEVPTVNDFFSEDEDVKPDIKHRFSPLPRRRNSASSEEEEADAPTTIARKVSFADAFGFDLVSVKEFDTWEIPNIAQNNDLEDEAFPQEEFFLTQLFTLPTSQEEVLQKVREHKVLLESIVFLPGITCMNGIIRVLNVSFEKFVYVRMTLDDWVSYYDILAEFMPNSCGSETDQFCFKISLVPPYQRDGAKVEFCIRYETSIGTFWANNDDKNYTLICHKKETVPKLDNKPHKEAADRHLKGCLKTAPSSKEELLATSDGDIWNNSRTSDANIPEIVCSQAEDKENAPANENIKDKNAEYNQGDQEDDEKELELLLNQHFTGAKGTSSRDERNLDTTEPVNFPSETVRLEKNLTCVERSSDLLRHPVPISSLSENTSQVIGEELKGNAKYSIGGYNSHPSGKEVSAGSANSSEQSWDSTGISETLSSAKYFPGTKQNEAINIAATVSSRQGESHTDITRCEADSASGSKMMERLFISEDDTSKETCEMRPEAISSSHDESLQLKACITGTLDGNANPAPEHQLPKMSHQTLDSLSSAADKSEGKIEMIESKVQAHLRGDLHTDTFAYTDVSVDSTKSQYSHQKGVGELSEKNYSTDTEKEKRVIEIADLALIGEEEAPRPFKPHRKHAFSASFLSDEDNKHRARPAQAGPGAYLPEDESRAEDAQEHRGFTRLKDRGKTENGNKGGLIGTESEENTTGQAWKRADSGVRWAAGGDARGQSSCTKESFICQEAESREKSSVSEHDIKGKAEAGMAYIIKTTSESAPEKMSASEKAVIAKLPQEIALSDRPTEEKETAFDTHEGRNDGSHALCQLNTVGVLYDTEFEKESVLDIYNARVHETLQGETMSVCNSGEKRAKAKPDIGDIPPAEGAVKASSAGKKEGLGQGLHSEEVSKYSQSAQKHRYSEELAELYSEESYLGTPSYLHVKAQTKTSTSGTNTMPSYHYKSPPLASSAADTDHPYIHSEFKVIEKVAESGYDLSLPNEMKHISKSLFPEAERKEVPSTSDTTVAREGRGSSIGQCFHQAEFKQEKSLRPEISISKATKEVAGRGSDSHHLITEGKTLSWLDDSQNEKQNVSHSADMSDQKSEEQMLSSESPSLKQIGCKIFCFFFFLVFAATLYHYDLMVCLALYLFSLYWLYWEGRGSKESVKKD", "length": 1167 }, "evidence": [ { "id": "F1SJC2", "url": "https://omabrowser.org/oma/group/F1SJC2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZM60-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3A", "gene_name": "Ppp1r3a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPAEVPGQISKDNFLEVPNLSDSVCEDEEVKATFKPGFSPQPSRRGSESSEDLYLDTPTSASRRVSFADSLGFSLVSVKEFDCWDLPSVSTDFDLTRDVLHTDEYILSPLFDLPSSKEELMEQLQVQKAVLESAEHLPGSTSVKGIIRVLNISFEKLVYVRMSLDDWQTHYDILAEYVPNSCDGETDQFSFKISLVPPYQMDGGKVEFCIRYETSVGTFWSNNNGTNYILVCQKKTKEPEPVVKPLEEGPSRQIKGCLKVKSSSKEEPLLTPEENKLGTLKFTESYIPTIICSHEDRDDLGANYQHVKDIDKKHDEHNEKELDLMINQRLITSHDEKNTFSTDAVNSTNKAEGSEKKQARHEIHTDLCRGPLSPSLSAESSLKRDFYHSRNYSPGNEHGHPPSEEIISDVGAIGSPLGDTSSDELMQLKVCSKEDVDDNANPAHGSGRLCSSSDQLRAGGLENNEAGIKKTGIKDYKYSHGDSYLEASTSLRESNASYKDEYDKVDDKREKKTCLGVNENPGKNFQSIFQNQERQMGCAKISGEGANANNQDLTTLLSKDTTTNTWAVTVDPSPSTNTNVNWREAGNGTDLERRTTDLGSPRNFSLLTDGYLFQADREKSDSSNSEDRNMNPQHKKNWNVLESQPETRETETNITKHTKEQAEYKDTWGKRDNSRNLKATSTEQLFTCQETECCELSSLADHGITEKAQAVAAYIIKTTLESTPESASARGKAIIAKLPQETARHDRPIEVKETAFDPHEGRKDDSHYSLCHGDTAGVIHDNDFERESHLDICNVRVDEMEKEKTTSTCSPRKTYDKEKHGIGSVTSIDEPSQVITGNQKATSKLDLHLGVLPTDRAILSANADLELLQELSRRTDFNAVHSAFNSDPGSASQDSSQVYRRCSKKPVPSYGEQKAVINTTLQSVPTKSEYNCHPESEIFGHATSKPEVVFKSSEIIKSGSGGEQGVGPILQQKEGSLEKSQDPMISINEPLENLDEVRSENEGLMRSGQLQCYLGDKGSVSSASATVPTQELQAQGSESLLSISINSKIPYFLLFLIFLATVYYYDLMIGLAFYLFSLYWLYWEGGRQRESVKKK", "length": 1096 }, "evidence": [ { "id": "F1SJC2", "url": "https://omabrowser.org/oma/group/F1SJC2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BLN7-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3A", "gene_name": "PPP1R3A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPSEEPSQISKDNFLEVPSLSDSLSEDEEVKATFRPGFSPQPSRRGSESSEDLYLDSPPSGARRVSFADTFGLNLVSVKEFDSWELPSGSADFDLRQDVFHTEEYVLSPQFGLPSSKEDLMQQLQVQKAILESTEYPPGSTSMKGIIRVLNVSFEKLVYVRMSLDDWQSYYDILAEYIPNSCDGETDQFSFKISLVPPYQKDGSKVEFCIRYETSVGTFWSNNNGTNYVLICQKKEQEPEPEKLQEDVPNRQIKGCLKVKSSKEESSVTSDENNFENSKVTDTYIPTIVCSHEDKEDLETSNQNVKDVNREQDERNEKELEPMINQHLLRSTASGDEKNTVNFPNNAERLEKKQIHDDVYTDLFKRPSSSSSSAERSLKGDFYHKEKYFSGNEHTYPPSEEFTSDTGEIKLSLGNTSSDEVVQLHIGSKEVLDDNANPAKGRGRVQMSCPSADQLMADNLNKKLEGEAKEIEVKDWECLRGDFRLDFHSEKSIEKGSSKKDYGNGKNEEEEQKIYLGVSEKQSKSFQSVLHDQERKMSHSEISVEGMGASNRDLTALPSKDTKIHDQSIRADTFHSPRTNLSLEETVSATSDSDLSASKGTALGGMPGQAGSPRNANVLRNKYLFQAEEEKSVWINPEDQNKNTQHKQSWNVLESQERARGSKTTITEQSKEQADCEDTWGKRDDTRSLKANPTEELFTCQETASCELSSLADHGITEKADAGTAYIIKTTSESTLECMSAREKAIIAKLPQETAQSDRPIEVKETAFDPHEGRNDDSHNTLCQRDTVGVIYDNDFEKESCSGICNVHVDEKEKEETIAIYNPGETHDRKKCVIGNTTSGEESSQVITDNQKAASKLDLHLGMLPTDKKIFPENRDHEQVQELSKKTIIDVIIHSSLNSDTNRTSQNGSQVSNHHAKSSVSSHEQATTTGHAITTMTLQSISSKSEYNCNPTSEIQGTEKHSHPASPLEEVSESSGIVTSDSTKERCIGQIVKQGECSVEKPLGPTILISEASENIEGVRHENEGLINSGQSLYSSGDKESDSPASDSLPAQESQSQSESLLSKYINSKVPYFLLFLIFLVTIYQYDLMIGLAFYLFSLYWLSWEGGRQKESVKKK", "length": 1117 }, "evidence": [ { "id": "F1SJC2", "url": "https://omabrowser.org/oma/group/F1SJC2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q16821-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3A", "gene_name": "PPP1R3A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPSEVPSQISKDNFLEVPNLSDSLCEDEEVTFQPGFSPQPSRRGSDSSEDIYLDTPSSGTRRVSFADSFGFNLVSVKEFDCWELPSASTTFDLGTDIFHTEEYVLAPLFDLPSSKEDLMQQLQIQKAILESTESLLGSTSIKGIIRVLNVSFEKLVYVRMSLDDWQTHYDILAEYVPNSCDGETDQFSFKIVLVPPYQKDGSKVEFCIRYETSVGTFWSNNNGTNYTFICQKKEQEPEPVKPWKEVPNRQIKGCLKVKSSKEESSVTSEENNFENPKNTDTYIPTIICSHEDKEDLEASNRNVKDVNREHDEHNEKELELMINQHLIRTRSTASRDERNTFSTDPVNFPNKAEGLEKKQIHGEICTDLFQRSLSPSSSAESSVKGDFYCNEKYSSGDDCTHQPSEETTSNMGEIKPSLGDTSSDELVQLHTGSKEVLDDNANPAHGNGTVQIPCPSSDQLMAGNLNKKHEGGAKNIEVKDLGCLRRDFHSDTSACLKESTEEGSSKEDYYGNGKDDEEQRIYLGVNEKQRKNFQTILHDQERKMGNPKISVAGIGASNRDLATLLSEHTAIPTRAITADVSHSPRTNLSWEEAVLTPEHHHLTSEGSALGGITGQVCSSRTGNVLRNDYLFQVEEKSGGINSEDQDNSPQHKQSWNVLESQGKSRENKTNITEHIKGQTDCEDVWGKRDNTRSLKATTEELFTCQETVCCELSSLADHGITEKAEAGTAYIIKTTSESTPESMSAREKAIIAKLPQETARSDRPIEVKETAFDPHEGRNDDSHYTLCQRDTVGVIYDNDFEKESRLGICNVRVDEMEKEETMSMYNPRKTHDREKCGTGNITSVEESSWVITEYQKATSKLDLQLGMLPTDKTVFSENRDLRQVQELSKKTDSDAIVHSAFNSDTNRAPQNSSPFSKHHTEISVSTNEQAIAVENAVTTMASQPISTKSENICNSTREIQGIEKHPYPESKPEEVSRSSGIVTSGSRKERCIGQIFQTEEYSVEKSLGPMILINKPLENMEEARHENEGLVSSGQSLYTSGEKESDSSASTSLPVEESQAQGNESLFSKYTNSKIPYFLLFLIFLITVYHYDLMIGLTFYVLSLSWLSWEEGRQKESVKKK", "length": 1122 }, "evidence": [ { "id": "F1SJC2", "url": "https://omabrowser.org/oma/group/F1SJC2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99MR9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3A", "gene_name": "Ppp1r3a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPAEEPGQISKDNFLEVPNLSDSVCEDEEVKATFKPGFSPQPSRRGSGSSEDMYLDTPTSASRRVSFADSLGFSLVSVKEFDCWELPSVSTDFDLSGDVFHTDEYVLSPLFDLPSSKEKLMEQLQVQKAVLESAEHLPGSSMKGIIRVLNISFEKLVYVRMSLDDWQTHYDILAEYVPNSCDGETDQFSFKISLVPPYQKEGGKVEFCIRYETSAGTFWSNNNGTNYILVCQKKRKEPEPVKPLEEAPSRQIKGCLKVKSRSKEEPLLAPEENKFETLKFTESYIPTIICSHEDKDDLGANHPNVDDINKKHDEHNGKELDLMINQRLITSQDEKNTFATDTVNFTNKAEGSEKKQAYHEINTDLFMGPLSPSLSAESSLKRDFYHSRSSSPGNEYGHPHSEEIISDMGEKGPSLGDTSSDELMQLELCSKEDLDDNANPANGSGRVCSSFDQRMACGLKNNEAGIKKTGIQDYKYSHGDSTKLEESNASSRDDYAKVDNKKEKQTCLGVNENPSKNFQSVFQTQEGHMGYPKISTEGDKANNQDLTSLLSKDITANTWAVTVDPCPSTNAKRSWREVGSGSNLEPGTSDLSSPRNFSPLTDDHLFQADRENSDSSNPENQNMNTRHRKKWNVLETQSETSETESDIAKHTKEQAEYKDMWEKTDNSRNLKATPTEHLFTCRETECYGLSSLADHGITEKAQAVTAYIIKTTLESTPESASARGKAIIAKLPQETAGNDRPIEVKETAFDPHEGRKDDSHYSLCHGDTAGVIHDNDFERESHLDICNLRVDEMKKEKTTSTCFPQKTYDKEKHGIGSVTSIDEPSQVITGNQKATSKLDLHLGVLPTDRAIFQANADLELLQELSRRTDFNAVPSAFNSDTASASRDSSQVYRHCSKKSVPSYGEEKAVTNTTLQSIPTKSEYNWHPESEVLGHAMSKPEDVFKSSEIMKSGSGGERGGGPILQQKEGSLENSQGPMFFTNEPLENLDEASSENEGLMHSGQSQCYLGDKGLVSSASATVSTQELEAQGRESLLSISTNSKIPYFLLFLIFLATVYYYDLMIGLAFYLFSLYWLYWEGGRQRESVKKK", "length": 1089 }, "evidence": [ { "id": "F1SJC2", "url": "https://omabrowser.org/oma/group/F1SJC2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "protein phosphatase type 1 complex", "id": "GO:0000164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000164", "evidence": [ { "database": "UniProtKB", "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "glycogen metabolic process", "id": "GO:0005977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005977", "evidence": [ { "database": "UniProtKB", "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" } ], "pmid": "" }, { "name": "regulation of glycogen biosynthetic process", "id": "GO:0005979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005979", "evidence": [ { "database": "UniProtKB", "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein phosphatase 1 binding", "id": "GO:0008157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008157", "evidence": [ { "database": "UniProtKB", "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" } ], "pmid": "" }, { "name": "glycogen binding", "id": "GO:2001069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001069", "evidence": [ { "database": "UniProtKB", "id": "F1SJC2", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 582, "end_pos": 584, "annotation": "n_glycosylation_sequon" }, { "start_pos": 664, "end_pos": 666, "annotation": "n_glycosylation_sequon" }, { "start_pos": 667, "end_pos": 669, "annotation": "n_glycosylation_sequon" }, { "start_pos": 777, "end_pos": 779, "annotation": "n_glycosylation_sequon" }, { "start_pos": 837, "end_pos": 839, "annotation": "n_glycosylation_sequon" }, { "start_pos": 908, "end_pos": 910, "annotation": "n_glycosylation_sequon" }, { "start_pos": 934, "end_pos": 936, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJC2" }, { "id": "PS51159", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51159" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CBM21", "eco_id": "ECO_0000259", "start_pos": 125, "end_pos": 233, "start_aa": "Gln", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 153, "end_pos": 155 }, { "start_pos": 20, "end_pos": 22 }, { "start_pos": 226, "end_pos": 228 }, { "start_pos": 417, "end_pos": 419 }, { "start_pos": 582, "end_pos": 584 }, { "start_pos": 664, "end_pos": 666 }, { "start_pos": 667, "end_pos": 669 }, { "start_pos": 777, "end_pos": 779 }, { "start_pos": 837, "end_pos": 839 }, { "start_pos": 908, "end_pos": 910 }, { "start_pos": 934, "end_pos": 936 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJC4-1", "uniprot_ac": "F1SJC4", "uniprot_id": "F1SJC4_PIG", "mass": { "chemical_mass": 25986.0, "monoisotopic_mass": 25986.0 }, "refseq": { "ac": "XP_003134810", "name": "myoD family inhibitor domain-containing protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134810" }, "gene_names": [ { "name": "MDFIC", "type": "recommended", "evidence": [ { "id": "F1SJC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ] }, { "name": "MDFIC", "type": "synonym", "evidence": [ { "id": "XP_003134810", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134810" } ] } ], "protein_names": [ { "name": "MyoD family inhibitor domain containing", "type": "synonym", "evidence": [ { "id": "F1SJC4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJC4/entry#names_and_taxonomy" } ] }, { "name": "myoD family inhibitor domain-containing protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003134810", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134810" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MDFIC", "url": "https://www.uniprot.org/uniprotkb/F1SJC4", "locus": { "chromosome": "18", "start_pos": 31027056, "end_pos": 31125465, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021885", "url": "https://www.ensembl.org/id/ENSSSCG00000021885" } ] } } ], "crossref": [ { "id": "F1SJC4", "url": "https://alphafold.ebi.ac.uk/entry/F1SJC4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100192442", "url": "https://www.ncbi.nlm.nih.gov/gene/100192442", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026134", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026134", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100192442", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100192442", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CDQDNTE", "url": "https://omabrowser.org/oma/group/CDQDNTE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJC4", "url": "https://www.orthodb.org/?gene=F1SJC4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15304", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15304", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15304:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15304:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15316", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15316", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134810", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134810", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJC4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJC4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGAGEALTPGPQRGAEEGGGWLGAPAQEKCDKENTDRDITQATNSCFTHGEKQDQSIWGNCSDDELIRTQPQRLPQLQTVVQESEEEIGKIKNGHPSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCRDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICFPS", "length": 242, "header": "tr|F1SJC4-1|F1SJC4_PIG Isoform 1 of MyoD family inhibitor domain containing OS=Sus scrofa OX=9823 GN=MDFIC PE=3 SV=3 CANONICAL=F1SJC4-1" }, "isoforms": [ { "isoform_ac": "F1SJC4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJC4/entry#F1SJC4-1", "sequence": { "sequence": "MSGAGEALTPGPQRGAEEGGGWLGAPAQEKCDKENTDRDITQATNSCFTHGEKQDQSIWGNCSDDELIRTQPQRLPQLQTVVQESEEEIGKIKNGHPSLSNGNGIHHGAKHVSADNRRLSAPVSQKMHRKIQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCRDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICFPS", "length": 242, "header": "tr|F1SJC4-1|F1SJC4_PIG Isoform 1 of MyoD family inhibitor domain containing OS=Sus scrofa OX=9823 GN=MDFIC PE=3 SV=3 CANONICAL=F1SJC4-1" }, "locus": { "chromosome": "18", "start_pos": 31124770, "end_pos": 31027302, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018116.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018116.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017626.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017626.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100192442", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100192442", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZVM7-1", "protein_name": "MyoD family inhibitor domain containing", "gene_name": "Mdfic", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGAGEALPPGPVGQQCPAEAGGGRLGSPAHEECNEDTTEKEKRQTTSSHTRCGLIRDQSIWRNPSDGELVRTQPERLPQLQTSAQEPSKEETSKIQNGGHTTMNNGNGIPHRAKHMSMDNHKMSSPVSQKMHRKIQSSLSVNNDVNKKSKVNAVFSQKSASSPEDCCVHCILACLFCEFLTLCNIVLGQASCGVCTSEACCCCCGDEMGDDCSCPCDMDCSIMDACCESSDCLEICMECCGICFPS", "length": 247 }, "evidence": [ { "id": "F1SJC4", "url": "https://omabrowser.org/oma/group/F1SJC4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F6NQ15-1", "protein_name": "MyoD family inhibitor domain-containing protein", "gene_name": "mdfic", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSEAILPPEGPEGPKKQLEEEANPLLSKSTDKCNRCADESVDATETSQTAVPGDPTTNKQDHMISENHTRDDLVRTQPQPLPQPATSLQHPVDAEASRQQNGLHMVLSNGHGTPRGVTQPPPSIHTSEPRKLPSPVSHRVQKKLRSSLSVNSDSSRRSKSSSTGSHKPGSTPEDCCVHCILACLFCEFLTLCNMVVAQASCGTCTSEACCCCCCADDLGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICFPT", "length": 257 }, "evidence": [ { "id": "F1SJC4", "url": "https://omabrowser.org/oma/group/F1SJC4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BX65-1", "protein_name": "MyoD family inhibitor domain-containing protein", "gene_name": "Mdfic", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCAGEALAPGPAEQQCPVEAGGGRLGSPAHEACNEDNTEKDKRPATSGHTRCGLMRDQSIWPNPSAGELVRTQPERLPQLQTSAQEPGKEETGKIKNGGHTRMSNGNGIPHGAKHVSVENHKISAPVSQKMHRKIQSSLSVNNDISKKSKVNAVFSPKAASSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCGDEMGDDCSCPCDMDCGIMDACCESSDCLEICMECCGICFPS", "length": 247 }, "evidence": [ { "id": "F1SJC4", "url": "https://omabrowser.org/oma/group/F1SJC4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P1T7-2", "protein_name": "MyoD family inhibitor domain-containing protein", "gene_name": "MDFIC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGAGEALAPGPVGPQRVAEAGGGQLGSTAQGKCDKDNTEKDITQATNSHFTHGEMQDQSIWGNPSDGELIRTQPQRLPQLQTSAQVPSGEEIGKIKNGHTGLSNGNGIHHGAKHGSADNRKLSAPVSQKMHRKIQSSLSVNSDISKKSKVNAVFSQKTGSSPEDCCVHCILACLFCEFLTLCNIVLGQASCGICTSEACCCCCGDEMGDDCNCPCDMDCGIMDACCESSDCLEICMECCGICFPS", "length": 246 }, "evidence": [ { "id": "F1SJC4", "url": "https://omabrowser.org/oma/group/F1SJC4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" }, { "name": "regulation of Wnt signaling pathway", "id": "GO:0030111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030111", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" }, { "name": "negative regulation of protein import into nucleus", "id": "GO:0042308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042308", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" }, { "name": "regulation of JNK cascade", "id": "GO:0046328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046328", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" }, { "name": "positive regulation of viral transcription", "id": "GO:0050434", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050434", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "Tat protein binding", "id": "GO:0030957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030957", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" }, { "name": "cyclin binding", "id": "GO:0030332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030332", "evidence": [ { "database": "UniProtKB", "id": "F1SJC4", "url": "https://www.uniprot.org/uniprotkb/F1SJC4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJC4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 242, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJC4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJC4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJD4-1", "uniprot_ac": "F1SJD4", "uniprot_id": "F1SJD4_PIG", "mass": { "chemical_mass": 60703.0, "monoisotopic_mass": 60703.0 }, "refseq": {}, "gene_names": [ { "name": "ENTREP1", "type": "recommended", "evidence": [ { "id": "F1SJD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ] } ], "protein_names": [ { "name": "Endosomal transmembrane epsin interactor 1", "type": "synonym", "evidence": [ { "id": "F1SJD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJD4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ENTREP1", "url": "https://www.uniprot.org/uniprotkb/F1SJD4", "locus": { "chromosome": "1", "start_pos": 222725259, "end_pos": 222658382, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005249", "url": "https://www.ensembl.org/id/ENSSSCG00000005249" } ] } } ], "crossref": [ { "id": "F1SJD4", "url": "https://alphafold.ebi.ac.uk/entry/F1SJD4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005249", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005249", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030431", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030431", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR17615", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17615", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17615:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17615:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04103", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04103", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJD4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJD4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLPVVLPGSCCPVAGLAGGPQAGGPGAAATASQEAPLPPLRPRWPRAALQPPGRPRCAANAAGVLAAPPALSSRRAAAAAAAAPGSALLPARPLLSLGLLQLILGCCMVALSFGALSLSSSPQVKNSCPFWAGSSVILSGIIGLTTWKRPMILLVDLGEGKICFCCEEYQPAKCTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFAARRSCIDESQISAEEVEEHRRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMAGPDVIPLPHIYGARIKGVEVFCPLDPPPPYEAVVSQTDQQQQSSFQMPEGSEVATSPLELICTPVIQGGDIPNTPGEERASISTPNANQPHPSRSQRALQPLRTRSKSDPMLHHSTERAVPVLSCEAATQTEGRPDLAAVTLRRGLRSRASRCRPRSLIDYKSYMDTKLLVARFLEQSSCTMTPDIHELVENIKSVLKSDEEHMEEAITSASFLEQIMAPMQPSASRTPVLPSRRQPGLLHLRSCGDLSTFVPVGRPRAERRPRRVEAERPHSLIGVIRETVL", "length": 564, "header": "tr|F1SJD4-1|F1SJD4_PIG Isoform 1 of Endosomal transmembrane epsin interactor 1 OS=Sus scrofa OX=9823 GN=ENTREP1 PE=3 SV=5 CANONICAL=F1SJD4-1" }, "isoforms": [ { "isoform_ac": "F1SJD4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJD4/entry#F1SJD4-1", "sequence": { "sequence": "MSLPVVLPGSCCPVAGLAGGPQAGGPGAAATASQEAPLPPLRPRWPRAALQPPGRPRCAANAAGVLAAPPALSSRRAAAAAAAAPGSALLPARPLLSLGLLQLILGCCMVALSFGALSLSSSPQVKNSCPFWAGSSVILSGIIGLTTWKRPMILLVDLGEGKICFCCEEYQPAKCTDKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFAARRSCIDESQISAEEVEEHRRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMAGPDVIPLPHIYGARIKGVEVFCPLDPPPPYEAVVSQTDQQQQSSFQMPEGSEVATSPLELICTPVIQGGDIPNTPGEERASISTPNANQPHPSRSQRALQPLRTRSKSDPMLHHSTERAVPVLSCEAATQTEGRPDLAAVTLRRGLRSRASRCRPRSLIDYKSYMDTKLLVARFLEQSSCTMTPDIHELVENIKSVLKSDEEHMEEAITSASFLEQIMAPMQPSASRTPVLPSRRQPGLLHLRSCGDLSTFVPVGRPRAERRPRRVEAERPHSLIGVIRETVL", "length": 564, "header": "tr|F1SJD4-1|F1SJD4_PIG Isoform 1 of Endosomal transmembrane epsin interactor 1 OS=Sus scrofa OX=9823 GN=ENTREP1 PE=3 SV=5 CANONICAL=F1SJD4-1" }, "locus": { "chromosome": "1", "start_pos": 222724532, "end_pos": 222658581, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005783.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005783.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005640.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005640.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ], "pmid": "" }, { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ], "pmid": "" }, { "name": "early endosome membrane", "id": "GO:0031901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031901", "evidence": [ { "database": "UniProtKB", "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ], "pmid": "" }, { "name": "recycling endosome membrane", "id": "GO:0055038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055038", "evidence": [ { "database": "UniProtKB", "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "CXCL12-activated CXCR4 signaling pathway", "id": "GO:0038160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038160", "evidence": [ { "database": "UniProtKB", "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ], "pmid": "" }, { "name": "negative adaptation of signaling pathway", "id": "GO:0022401", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022401", "evidence": [ { "database": "UniProtKB", "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin ligase activator activity", "id": "GO:1990757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990757", "evidence": [ { "database": "UniProtKB", "id": "F1SJD4", "url": "https://www.uniprot.org/uniprotkb/F1SJD4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJD4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 564, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJD4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJD4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJD9-1", "uniprot_ac": "F1SJD9", "uniprot_id": "F1SJD9_PIG", "mass": { "chemical_mass": 52865.0, "monoisotopic_mass": 52865.0 }, "refseq": {}, "gene_names": [ { "name": "ASZ1", "type": "recommended", "evidence": [ { "id": "F1SJD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" } ] } ], "protein_names": [ { "name": "Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1SJD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJD9/entry#names_and_taxonomy" } ] }, { "name": "Germ cell-specific ankyrin, SAM and basic leucine zipper domain-containing protein", "type": "synonym", "evidence": [ { "id": "F1SJD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJD9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a central role during spermatogenesis by repressing transposable elements and preventing their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in the regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.", "evidence": [ { "database": "UniProtKB", "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9#function" }, { "database": "UniProtKB", "id": "ARBA00025297", "url": "https://www.uniprot.org/uniprotkb/ARBA00025297#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASZ1", "url": "https://www.uniprot.org/uniprotkb/F1SJD9", "locus": { "chromosome": "18", "start_pos": 28910934, "end_pos": 28859112, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016627", "url": "https://www.ensembl.org/id/ENSSSCG00000016627" } ] } } ], "crossref": [ { "id": "F1SJD9", "url": "https://alphafold.ebi.ac.uk/entry/F1SJD9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016627", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016627", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09521", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09521", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24157:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24157:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07647", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07647", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJD9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGQLRGPAVAGGGESSESEDDGWEMGYLDRAAQKLKGPLPVEEKNETFKKALAAGDISLVKELLDSGISVDSSFRYGWTPLMYAASVSNVELVRVLLDRGANASFDKDKQTILITACSARGSEEQILKCVELLLSRNADPNVACRRLMTPIMYAARDGHPQVVALLVAHGAEVNTQDENGYTALTWAARQGHKNVVLKLLELGANKMLQTKDGKTPSEIAKRNKHLENFLSLTLNPLEGKLQQLIKEETVCKLLRTDSDKEKDHIFSSYTAFGDLEIFLHGLGLEHMTDLLKERDITLRHLLTMRKDEFTKNGITSRDQQKILAALKELEVEEIKFGELPEVAKLEISGDEFLNFLLKLNKQCGHLITAVQNIITELPVNSHKIVLEWASPRNFTSVCEELVSNVEDLSEEVCKLKDLIQKLQNERENDPTHIPLMEEVSTWKSRILKRTAITVCGFGLLLFICKLTFQRK", "length": 473, "header": "tr|F1SJD9-1|F1SJD9_PIG Isoform 1 of Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ASZ1 PE=4 SV=5 CANONICAL=F1SJD9-1" }, "isoforms": [ { "isoform_ac": "F1SJD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJD9/entry#F1SJD9-1", "sequence": { "sequence": "MAAGQLRGPAVAGGGESSESEDDGWEMGYLDRAAQKLKGPLPVEEKNETFKKALAAGDISLVKELLDSGISVDSSFRYGWTPLMYAASVSNVELVRVLLDRGANASFDKDKQTILITACSARGSEEQILKCVELLLSRNADPNVACRRLMTPIMYAARDGHPQVVALLVAHGAEVNTQDENGYTALTWAARQGHKNVVLKLLELGANKMLQTKDGKTPSEIAKRNKHLENFLSLTLNPLEGKLQQLIKEETVCKLLRTDSDKEKDHIFSSYTAFGDLEIFLHGLGLEHMTDLLKERDITLRHLLTMRKDEFTKNGITSRDQQKILAALKELEVEEIKFGELPEVAKLEISGDEFLNFLLKLNKQCGHLITAVQNIITELPVNSHKIVLEWASPRNFTSVCEELVSNVEDLSEEVCKLKDLIQKLQNERENDPTHIPLMEEVSTWKSRILKRTAITVCGFGLLLFICKLTFQRK", "length": 473, "header": "tr|F1SJD9-1|F1SJD9_PIG Isoform 1 of Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ASZ1 PE=4 SV=5 CANONICAL=F1SJD9-1" }, "locus": { "chromosome": "18", "start_pos": 28910629, "end_pos": 28859205, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018103.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018103.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017613.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017613.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" } ], "pmid": "" }, { "name": "male meiotic nuclear division", "id": "GO:0007140", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007140", "evidence": [ { "database": "UniProtKB", "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" } ], "pmid": "" }, { "name": "regulatory ncRNA-mediated gene silencing", "id": "GO:0031047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031047", "evidence": [ { "database": "UniProtKB", "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" } ], "pmid": "" }, { "name": "transposable element silencing", "id": "GO:0010526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010526", "evidence": [ { "database": "UniProtKB", "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "pi-body", "id": "GO:0071546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071546", "evidence": [ { "database": "UniProtKB", "id": "F1SJD9", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 395, "end_pos": 397, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJD9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 473, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJD9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJD9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJD9" }, { "id": "PF07647", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07647" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 270, "end_pos": 332, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 395, "end_pos": 397 }, { "start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJF2-1", "uniprot_ac": "F1SJF2", "uniprot_id": "F1SJF2_PIG", "mass": { "chemical_mass": 180470.0, "monoisotopic_mass": 180470.0 }, "refseq": { "ac": "XP_020934314", "name": "cortactin-binding protein 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934314" }, "gene_names": [ { "name": "CTTNBP2", "type": "recommended", "evidence": [ { "id": "F1SJF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" } ] }, { "name": "CTTNBP2", "type": "synonym", "evidence": [ { "id": "XP_020934314", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934314" } ] } ], "protein_names": [ { "name": "Cortactin-binding protein 2", "type": "recommended", "evidence": [ { "id": "F1SJF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJF2/entry#names_and_taxonomy" } ] }, { "name": "cortactin-binding protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020934314", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934314" } ] } ], "function": [ { "annotation": "Regulates the dendritic spine distribution of CTTN/cortactin in hippocampal neurons, and thus controls dendritic spinogenesis and dendritic spine maintenance. Associates with the striatin-interacting phosphatase and kinase (STRIPAK) core complex to regulate dendritic spine distribution of the STRIPAK complex in hippocampal neurons.", "evidence": [ { "database": "UniProtKB", "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2#function" }, { "database": "UniProtKB", "id": "ARBA00044742", "url": "https://www.uniprot.org/uniprotkb/ARBA00044742#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CTTNBP2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2", "locus": { "chromosome": "18", "start_pos": 28573159, "end_pos": 28415067, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016625", "url": "https://www.ensembl.org/id/ENSSSCG00000016625" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016625", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016625", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517505", "url": "https://www.ncbi.nlm.nih.gov/gene/100517505", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23166:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23166:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09727", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09727", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25408", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25408", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934314", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934314", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJF2-1", "url": "https://www.uniprot.org/uniprotkb/F1SJF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATDGASCEPDFSRAPEEAAGAPAEAAKKEFDVDTLSKSELRMLLSVMEGELEARDLVIEALRARRKEVFIQERYGRFNLNDPFLALQRDYEAGAGDKEKKPVCTNPLSILEAVMAHCRKMQERMSTQLAAAESRQKKLEMEKLQLQALEQEHKKLAARLEEERGKNKHVVLMLVKECKQLSGRVIEEAQKLEEVMAKLEEEKKKMSVLEEELSAEKQRSTEMEAQMEKQLSEFDTEREQLRAKLHREEAHTTDLKEEIDKMKKMIEQLKRGNDSKPSLSLPRKTKDRRLVSISVGTEGPMTRSVACQTDLVTENADPLKKLPLTVPVKPAAGSPLVSANAKGNVSAGAALVRPGIDRQASHGDLIGSSLPVAPPPSTTRIEENGPSTGSTSDLASNPSPLPSNAAPPTVHTPGPAPQGCSPAQPPHSLHSPCAGAPLHPGLNPRIQAARFRFQGNANDPDQNGNTTQSPPSRDVSPTSRDNVVAKQLARNTVTQALSRFTSPPAGAPPRPGAPPTGDAGTYPLVGRTSLKTSGVGRVDRGNPPPIPPKKPGLSQTPSPPHPQLKVIMDSSRAPSAGAKVDNKTVASPPSTLPQGIRVINEENLPKSSSPQLPPKPSIDLTVAPAGCAVSALATSQVGAWPAETPGLNQPACSESSLVIPTTIAFCSSINPISASSCRAGASDSLLVTASGWSPSLTPLLMSGGPAPLAGRPTLLQQAAAQGNVTLLSMLLNEEGLDINYSCEDGHSALYSAAKNGHTDCVRLLLNAEAQVNAADKNGFTPLCAAAAQGHFKCVELLIAYDANINHAADGGQTPLYLACKNGNKECIKLLLEAKTDRSVKTRDGWTPVHAAVDTGNVDSLKLLMYHRTPACRNSLHEEPESGVFDLNQGEENPEGLSKPVVPADLINHADSEGWTAAHIAASKGFKNCLEVLCGHGGLEPERRDKYNRTVHDVATDDCKHLLENLNALKIPLRISVGEIQPSNYGSDDFECENTICALNIRKQTTWDDFSKAVSQALTNHFQAISSDGWWSLEDVTFHSTTDSSIGLGASSVRSITLGNVPWSAGQSFTQSPWDFLRTNKAEQITVLLSGPQEGCLSSVTYASMIPLQMLQNYLRLVEQYHNVIFHGPEGSLQDYIAHQLALCMKHRQMAAGFSCEIVRAKVDAGFSKEQLVDLFISSACLIPVKQSPANKKIIIILENLEKSSLSELLGDFLGPLENRSTENPCTFQKGNGTFECYYFHENCFLLGTIAKACLQGSDLLVQQHFRWVQLRWDGEPMQGLLQRCLRRKVVTKFRGQVPSPCDPVCKTVDWALAVWRQLNSCLAHLGTPEALLGPKYFLSCPVIPGHAQETVRWMSKLWNAVIAPRVQAAILSRASLKRQPGLGQTTRNPSQGQQAVVRAALSILLNKAVLHGCPLQRAELDQHTADFKGGSFPLSIVSSYSSCSKKKDSGAWRKVSTSPRKKSGRFPSPTWNKPDLIEEGVKNKTILQLNRNRNTSLSKQMSLENELSLTLNLEQRLSLGLDDEADLVKELQSMCSSKSESDISKIADSRDDLRRFDSSGNNPAFSATVNNPRMPVSQEEVSPLSSHPMSECSNSKSKTELGVSRVKSFLPVPRSKVTQCSQNTKRSSSSSNTRQIEINNNSKEEIWNLRKNEQIEKPNK", "length": 1660, "header": "tr|F1SJF2-1|F1SJF2_PIG Isoform 1 of Cortactin-binding protein 2 OS=Sus scrofa OX=9823 GN=CTTNBP2 PE=4 SV=2 CANONICAL=F1SJF2-1" }, "isoforms": [ { "isoform_ac": "F1SJF2-1", "url": "https://www.uniprot.org/uniprotkb/F1SJF2/entry#F1SJF2-1", "sequence": { "sequence": "MATDGASCEPDFSRAPEEAAGAPAEAAKKEFDVDTLSKSELRMLLSVMEGELEARDLVIEALRARRKEVFIQERYGRFNLNDPFLALQRDYEAGAGDKEKKPVCTNPLSILEAVMAHCRKMQERMSTQLAAAESRQKKLEMEKLQLQALEQEHKKLAARLEEERGKNKHVVLMLVKECKQLSGRVIEEAQKLEEVMAKLEEEKKKMSVLEEELSAEKQRSTEMEAQMEKQLSEFDTEREQLRAKLHREEAHTTDLKEEIDKMKKMIEQLKRGNDSKPSLSLPRKTKDRRLVSISVGTEGPMTRSVACQTDLVTENADPLKKLPLTVPVKPAAGSPLVSANAKGNVSAGAALVRPGIDRQASHGDLIGSSLPVAPPPSTTRIEENGPSTGSTSDLASNPSPLPSNAAPPTVHTPGPAPQGCSPAQPPHSLHSPCAGAPLHPGLNPRIQAARFRFQGNANDPDQNGNTTQSPPSRDVSPTSRDNVVAKQLARNTVTQALSRFTSPPAGAPPRPGAPPTGDAGTYPLVGRTSLKTSGVGRVDRGNPPPIPPKKPGLSQTPSPPHPQLKVIMDSSRAPSAGAKVDNKTVASPPSTLPQGIRVINEENLPKSSSPQLPPKPSIDLTVAPAGCAVSALATSQVGAWPAETPGLNQPACSESSLVIPTTIAFCSSINPISASSCRAGASDSLLVTASGWSPSLTPLLMSGGPAPLAGRPTLLQQAAAQGNVTLLSMLLNEEGLDINYSCEDGHSALYSAAKNGHTDCVRLLLNAEAQVNAADKNGFTPLCAAAAQGHFKCVELLIAYDANINHAADGGQTPLYLACKNGNKECIKLLLEAKTDRSVKTRDGWTPVHAAVDTGNVDSLKLLMYHRTPACRNSLHEEPESGVFDLNQGEENPEGLSKPVVPADLINHADSEGWTAAHIAASKGFKNCLEVLCGHGGLEPERRDKYNRTVHDVATDDCKHLLENLNALKIPLRISVGEIQPSNYGSDDFECENTICALNIRKQTTWDDFSKAVSQALTNHFQAISSDGWWSLEDVTFHSTTDSSIGLGASSVRSITLGNVPWSAGQSFTQSPWDFLRTNKAEQITVLLSGPQEGCLSSVTYASMIPLQMLQNYLRLVEQYHNVIFHGPEGSLQDYIAHQLALCMKHRQMAAGFSCEIVRAKVDAGFSKEQLVDLFISSACLIPVKQSPANKKIIIILENLEKSSLSELLGDFLGPLENRSTENPCTFQKGNGTFECYYFHENCFLLGTIAKACLQGSDLLVQQHFRWVQLRWDGEPMQGLLQRCLRRKVVTKFRGQVPSPCDPVCKTVDWALAVWRQLNSCLAHLGTPEALLGPKYFLSCPVIPGHAQETVRWMSKLWNAVIAPRVQAAILSRASLKRQPGLGQTTRNPSQGQQAVVRAALSILLNKAVLHGCPLQRAELDQHTADFKGGSFPLSIVSSYSSCSKKKDSGAWRKVSTSPRKKSGRFPSPTWNKPDLIEEGVKNKTILQLNRNRNTSLSKQMSLENELSLTLNLEQRLSLGLDDEADLVKELQSMCSSKSESDISKIADSRDDLRRFDSSGNNPAFSATVNNPRMPVSQEEVSPLSSHPMSECSNSKSKTELGVSRVKSFLPVPRSKVTQCSQNTKRSSSSSNTRQIEINNNSKEEIWNLRKNEQIEKPNK", "length": 1660, "header": "tr|F1SJF2-1|F1SJF2_PIG Isoform 1 of Cortactin-binding protein 2 OS=Sus scrofa OX=9823 GN=CTTNBP2 PE=4 SV=2 CANONICAL=F1SJF2-1" }, "locus": { "chromosome": "18", "start_pos": 28572325, "end_pos": 28415174, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018099.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018099.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017609.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017609.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" } ], "pmid": "" }, { "name": "postsynaptic actin cytoskeleton", "id": "GO:0098871", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098871", "evidence": [ { "database": "UniProtKB", "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" } ], "pmid": "" }, { "name": "dendritic spine", "id": "GO:0043197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043197", "evidence": [ { "database": "UniProtKB", "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" } ], "pmid": "" }, { "name": "FAR/SIN/STRIPAK complex", "id": "GO:0090443", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090443", "evidence": [ { "database": "UniProtKB", "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of synapse organization", "id": "GO:0050807", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050807", "evidence": [ { "database": "UniProtKB", "id": "F1SJF2", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1218, "end_pos": 1220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1231, "end_pos": 1233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1483, "end_pos": 1485, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1494, "end_pos": 1496, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1640, "end_pos": 1642, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 582, "end_pos": 584, "annotation": "n_glycosylation_sequon" }, { "start_pos": 723, "end_pos": 725, "annotation": "n_glycosylation_sequon" }, { "start_pos": 739, "end_pos": 741, "annotation": "n_glycosylation_sequon" }, { "start_pos": 947, "end_pos": 949, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" }, { "id": "PF25408", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25408" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CortBP2/NAV1-like AAA+ ATPase lid", "eco_id": "ECO_0000259", "start_pos": 1306, "end_pos": 1373, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SJF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJF2" }, { "id": "PF09727", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09727" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cortactin-binding protein-2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 138, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1218, "end_pos": 1220 }, { "start_pos": 1231, "end_pos": 1233 }, { "start_pos": 1483, "end_pos": 1485 }, { "start_pos": 1494, "end_pos": 1496 }, { "start_pos": 1640, "end_pos": 1642 }, { "start_pos": 273, "end_pos": 275 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 465, "end_pos": 467 }, { "start_pos": 582, "end_pos": 584 }, { "start_pos": 723, "end_pos": 725 }, { "start_pos": 739, "end_pos": 741 }, { "start_pos": 947, "end_pos": 949 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJG8-1", "uniprot_ac": "F1SJG8", "uniprot_id": "F1SJG8_PIG", "mass": { "chemical_mass": 62328.0, "monoisotopic_mass": 62328.0 }, "refseq": {}, "gene_names": [ { "name": "KCNV2", "type": "recommended", "evidence": [ { "id": "F1SJG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ] } ], "protein_names": [ { "name": "Potassium voltage-gated channel subfamily V member 2", "type": "recommended", "evidence": [ { "id": "F1SJG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJG8/entry#names_and_taxonomy" } ] }, { "name": "Voltage-gated potassium channel subunit Kv8.2", "type": "synonym", "evidence": [ { "id": "F1SJG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJG8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Potassium channel subunit. Modulates channel activity by shifting the threshold and the half-maximal activation to more negative values.", "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8#function" }, { "database": "UniProtKB", "id": "ARBA00056149", "url": "https://www.uniprot.org/uniprotkb/ARBA00056149#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNV2", "url": "https://www.uniprot.org/uniprotkb/F1SJG8", "locus": { "chromosome": "1", "start_pos": 219100447, "end_pos": 219112905, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005228", "url": "https://www.ensembl.org/id/ENSSSCG00000005228" } ] } } ], "crossref": [ { "id": "F1SJG8", "url": "https://alphafold.ebi.ac.uk/entry/F1SJG8", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003968", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003968", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003971", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003971", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028325", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028325", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11537", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11537", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11537:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11537:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1296072", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296072", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJG8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLKQSERRRSWGHRTWNTTESVGSQHRRSICSVGGRSGSQASIPPWTEGNYNYYIEEDEDGEEEEQWKDDLAEGEQQAGEDTTDQGESHTDAPVVSSTLNVNVGGHSYHLDYTEVACYPKTRLGRLATSTSRSRQLGLCDDYEAQTDEYFFDRDPEVFQLIYNFYASGVLLVRDELCPRSFLEELGYWGVRLKYTPRCCRICFEERRDELSEQLKIQRELRAQAQAEEAEELFQDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSLFVLISVVALALNTVEEMQHQAGQGAGGGDPRPFLEHVEMLCMAFFTLEFLLRLASTPDLRRFVRSALNLVDLVAILPLYLQLLLECFTAEDQLHGKTVGRVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLCQCYQQVGCLLLFITMGIFTFSAAVYSVEHDVRGTNFTSIPQAWWWAAVSISTVGYGDMYPETHLGRLFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTAIRRERGNVEFLQRARKKMAECLARSNPQPTPRQNH", "length": 545, "header": "tr|F1SJG8-1|F1SJG8_PIG Isoform 1 of Potassium voltage-gated channel subfamily V member 2 OS=Sus scrofa OX=9823 GN=KCNV2 PE=1 SV=3 CANONICAL=F1SJG8-1" }, "isoforms": [ { "isoform_ac": "F1SJG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJG8/entry#F1SJG8-1", "sequence": { "sequence": "MLKQSERRRSWGHRTWNTTESVGSQHRRSICSVGGRSGSQASIPPWTEGNYNYYIEEDEDGEEEEQWKDDLAEGEQQAGEDTTDQGESHTDAPVVSSTLNVNVGGHSYHLDYTEVACYPKTRLGRLATSTSRSRQLGLCDDYEAQTDEYFFDRDPEVFQLIYNFYASGVLLVRDELCPRSFLEELGYWGVRLKYTPRCCRICFEERRDELSEQLKIQRELRAQAQAEEAEELFQDMRFYGPQRRRLWNLMEKPFSSVAAKAIGVASSLFVLISVVALALNTVEEMQHQAGQGAGGGDPRPFLEHVEMLCMAFFTLEFLLRLASTPDLRRFVRSALNLVDLVAILPLYLQLLLECFTAEDQLHGKTVGRVGKVGQVLRVMRLMRIFRILKLARHSTGLRAFGFTLCQCYQQVGCLLLFITMGIFTFSAAVYSVEHDVRGTNFTSIPQAWWWAAVSISTVGYGDMYPETHLGRLFAFLCIAFGIILNGMPISILYNKFSDYYSKLKAYEYTAIRRERGNVEFLQRARKKMAECLARSNPQPTPRQNH", "length": 545, "header": "tr|F1SJG8-1|F1SJG8_PIG Isoform 1 of Potassium voltage-gated channel subfamily V member 2 OS=Sus scrofa OX=9823 GN=KCNV2 PE=1 SV=3 CANONICAL=F1SJG8-1" }, "locus": { "chromosome": "1", "start_pos": 219112905, "end_pos": 219100450, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005762.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005762.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005620.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005620.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 540, "start_aa": "Thr", "end_pos": 540, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr540", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1296072", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296072", "resource": "Reactome", "description": "Voltage gated Potassium channels" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ], "pmid": "" }, { "name": "voltage-gated potassium channel complex", "id": "GO:0008076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008076", "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ], "pmid": "" }, { "name": "action potential", "id": "GO:0001508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001508", "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ], "pmid": "" }, { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "potassium channel regulator activity", "id": "GO:0015459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015459", "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ], "pmid": "" }, { "name": "voltage-gated potassium channel activity", "id": "GO:0005249", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005249", "evidence": [ { "database": "UniProtKB", "id": "F1SJG8", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 440, "end_pos": 442, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJG8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 545, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJG8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJG8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" }, { "id": "PF00520", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ion transport", "eco_id": "ECO_0000259", "start_pos": 264, "end_pos": 502, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SJG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJG8" }, { "id": "PF02214", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Potassium channel tetramerisation-type BTB", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 193, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 540 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 17, "end_pos": 19 }, { "start_pos": 440, "end_pos": 442 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJG9-1", "uniprot_ac": "F1SJG9", "uniprot_id": "F1SJG9_PIG", "mass": { "chemical_mass": 73408.0, "monoisotopic_mass": 73408.0 }, "refseq": { "ac": "XP_001927704", "name": "pumilio homolog 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927704" }, "gene_names": [ { "name": "PUM3", "type": "recommended", "evidence": [ { "id": "F1SJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ] }, { "name": "PUM3", "type": "synonym", "evidence": [ { "id": "XP_001927704", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927704" } ] } ], "protein_names": [ { "name": "Pumilio homolog 3", "type": "recommended", "evidence": [ { "id": "F1SJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJG9/entry#names_and_taxonomy" } ] }, { "name": "pumilio homolog 3", "type": "synonym", "evidence": [ { "id": "XP_001927704", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927704" } ] } ], "function": [ { "annotation": "Inhibits the poly(ADP-ribosyl)ation activity of PARP1 and the degradation of PARP1 by CASP3 following genotoxic stress. Binds to double-stranded RNA or DNA without sequence specificity. Involved in development of the eye and of primordial germ cells.", "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9#function" }, { "database": "UniProtKB", "id": "ARBA00055542", "url": "https://www.uniprot.org/uniprotkb/ARBA00055542#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PUM3", "url": "https://www.uniprot.org/uniprotkb/F1SJG9", "locus": { "chromosome": "1", "start_pos": 219038506, "end_pos": 218994200, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005227", "url": "https://www.ensembl.org/id/ENSSSCG00000005227" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005227", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005227", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152831", "url": "https://www.ncbi.nlm.nih.gov/gene/100152831", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012959", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012959", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033133", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033133", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152831", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152831", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YGPEFSI", "url": "https://omabrowser.org/oma/group/YGPEFSI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJG9", "url": "https://www.orthodb.org/?gene=F1SJG9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13389", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13389", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13389:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13389:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927704", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927704", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJG9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJG9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMEVKGKKKFTGKGTKTSQEKNRFHKNNGSGSSKTFPQKVVKEGEPKITSKNFEKSATKPGKKGVKQFKNKQQGDKIPKNKFQQGNKFNRKRKIQPDSKNDGSAAKKPKWDEFKKKKKELKQSRQLSDKANYDIVVRAKQIWEILRRKDCNKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGTEEQRKQAFEELRGDLVELSKAKYSRNIVKKFLMYGNKAQIAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADCPTLDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTHAPPKLRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEIRRRELLESISPALLSYLQGHAQEVMLDKSACVLVSDILGAAIGDVQPAMNAIASLAAAELHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKESGREGCFAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSSDQEVANEVKAGLKSLIPTLEKNKNTSKGIEMLLEKLTA", "length": 648, "header": "tr|F1SJG9-1|F1SJG9_PIG Isoform 1 of Pumilio homolog 3 OS=Sus scrofa OX=9823 GN=PUM3 PE=4 SV=3 CANONICAL=F1SJG9-1" }, "isoforms": [ { "isoform_ac": "F1SJG9-1", "url": "https://www.uniprot.org/uniprotkb/F1SJG9/entry#F1SJG9-1", "sequence": { "sequence": "MMEVKGKKKFTGKGTKTSQEKNRFHKNNGSGSSKTFPQKVVKEGEPKITSKNFEKSATKPGKKGVKQFKNKQQGDKIPKNKFQQGNKFNRKRKIQPDSKNDGSAAKKPKWDEFKKKKKELKQSRQLSDKANYDIVVRAKQIWEILRRKDCNKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGTEEQRKQAFEELRGDLVELSKAKYSRNIVKKFLMYGNKAQIAEIMRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADCPTLDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTHAPPKLRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIINSLPNIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEIRRRELLESISPALLSYLQGHAQEVMLDKSACVLVSDILGAAIGDVQPAMNAIASLAAAELHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKESGREGCFAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSSDQEVANEVKAGLKSLIPTLEKNKNTSKGIEMLLEKLTA", "length": 648, "header": "tr|F1SJG9-1|F1SJG9_PIG Isoform 1 of Pumilio homolog 3 OS=Sus scrofa OX=9823 GN=PUM3 PE=4 SV=3 CANONICAL=F1SJG9-1" }, "locus": { "chromosome": "1", "start_pos": 219036962, "end_pos": 219000466, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005761.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005761.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005619.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005619.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152831", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152831", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YCX6-1", "protein_name": "Pumilio homolog 3", "gene_name": "PUM3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKAWNKKKFPGKNGKVSRGKQLRGKKKFKKDDDSVPLKTFHSKGDEEEKPKSISKKPVKGNLRPGRASVKQFKNKQQSEKLAKKRRYQDSTQGESDSKKPKWDDFKKKKKELKQSRQLNDRSNYDIIVKSKQIWESVRRKKCDKEKREKLMNELQKLLHGKIKNLAFAHDSTRVIQCFIQYGNDKQRQETFEELKDSLVELSKSKYSRNIVKKFLMYGTKQQIAEIIKSFKGHVKKMLRHAEASAVVEYAYNDKAILEQRNMLTEELYGNTFQVYKTPIVPTLDKVLEAQPEKREAILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTHALPKQRSEMIEAIREAVIYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYIEKIATGEFSHLVLLAAFDCIDDTKLVKQLIITELNASLPSLISNKHGKKVLLYLLSPRDPAHFVPEIITLLQQGDGNAYSKKSTELRRHELLEAISPPLLEYLQEHIQEVVMDKAAFVLVADILRTATGDIQPTLNAIANLAAEELVPGGRDGQLHIAEHPAGHLVLKWLIEQDEKMRESGKEGCFGRTLVECVGIENLKTWAEVNRGAIVLCCLLRSTDQKVTNAVKKGLKKIVPKLKLNKNVKGIEALLEKLT", "length": 638 }, "evidence": [ { "id": "F1SJG9", "url": "https://omabrowser.org/oma/group/F1SJG9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7GRI4-1", "protein_name": "Pumilio homolog 3", "gene_name": "Pum3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGGKSILGRAEGIAMMEVKEKKKFTGKSPKTAQGKTRFHKNRDSGSSKTFPQKVVKEGGPKVSSKNFEKGATKPGKKGVKQFKNKPQGGKGPKDKFQKPNTFNKKRKFQPDGKSDESAAKKPKWDDFKKKKKELKQSRQLSDKTNYDIVVRAKHIWESLRRKDCDKEKRRKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFEELQGDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHPTLGKVLEVQPGKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIELLQKGDGNAHSKKDTAIRRRELLESISPALLNHLQGHAREVVLDKSACVLVSDILGSATGDVQPAMDAIASLAAVELHPGGKDGELHVAEHPAGHLVLKWLIEQDKKMKDNGREGCFAKTLIERVGMKNLKSWASINRGAIILSSLLQSCDQEVVNKVKAGLKSLIPTLEKNKSTSKGVEILLEKLTA", "length": 662 }, "evidence": [ { "id": "F1SJG9", "url": "https://omabrowser.org/oma/group/F1SJG9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q04373-1", "protein_name": "Pumilio homology domain family member 6", "gene_name": "PUF6", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAPLTKKTNGKRSAKEVSHSEKKLAKKPRISIDSSDEESELSKKEDAVSSSSDDDDLDDLSTSDSEAEEEADELDISDDSEEHENENEEKEGKDKSEGGENGNHTEQRKLLKERKMQRKSGTQVQQIKSVWERLRVKTPPLPKQIREKLSNEIWELSKDCISDLVLKHDASRIVQTLVKYSSKDRREQIVDALKGKFYVLATSAYGKYLLVKLLHYGSRSSRQTIINELHGSLRKLMRHREGAYVVEDLFVLYATHEQRQQMIKEFWGSEYAVFRETHKDLTIEKVCESSIEKRNIIARNLIGTITASVEKGSTGFQILHAAMREYVKIANEKEISEMIELLHEQFAELVHTPEGSDVACTLVARANAKERKLILKALKNHAEKLIKNEYGNIVFITILNCVDDTVLVFKTFSPTVKEHLQEFIIDKFGRRPWLYILLGLDGKYFSPIVKNELLRYIELSKATSKKDPLQRRHELLSKFAPMFLSTISKDYSSILTENLGCQFIAEVLINDELYAQLNEKDQEKYQQVLNNILTTFKGDITEEEHPIHRAFSTRLLKALIQGGKWNNKEKKVIPLKNVQGLGVPFAEKLYDEIIDSSNLLEWINNADSSFTIVALYETLKDQKEGKPFLKDLRGVQSKITTDESNKGSQLLAKLLK", "length": 656 }, "evidence": [ { "id": "F1SJG9", "url": "https://omabrowser.org/oma/group/F1SJG9/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q15397-1", "protein_name": "Pumilio homolog 3", "gene_name": "PUM3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVKGKKQFTGKSTKTAQEKNRFHKNSDSGSSKTFPTRKVAKEGGPKVTSRNFEKSITKLGKKGVKQFKNKQQGDKSPKNKFQPANKFNKKRKFQPDGRSDESAAKKPKWDDFKKKKKELKQSRQLSDKTNYDIVVRAKQMWEILRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCYIQYGNEEQRKQAFEELRDDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHAEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHRTLDKVLEVQPEKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSEMIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLLSPRDPAHTVREIIEVLQKGDGNAHSKKDTEVRRRELLESISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIASLAATGLHPGGKDGELHIAEHPAGHLVLKWLIEQDKKMKENGREGCFAKTLVEHVGMKNLKSWASVNRGAIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKLST", "length": 648 }, "evidence": [ { "id": "F1SJG9", "url": "https://omabrowser.org/oma/group/F1SJG9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q562C7-1", "protein_name": "Pumilio homolog 3", "gene_name": "Pum3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVKGKKKITGKSPQTSQGKNKFHKNSESSSAKAFPRKAAKEGGPKVTSKNFEKGATKPGKKRVKQFKNKPQGGKGPKDKFQKANKFNKKRKFQPDGKSDESAAKKPKWDDFKKKKKELKQNRQLSDKTNYDVVVRAKHIWESLRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCLIQYGSEEQRKWAFEELQGDLVELSKAKYSRNIVKKFLMYGSKPQIAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHPTLEKVLEVQPGKLELILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKLRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKIANGQYSHLVLLAAFDCIDDTKLVKQIIISEVISSLPSIVNDKYGRKVLLYLLSPRAPAHLVPEIIQLLQKGDGNAHSKKDTAIRRRELLESISPALLSYLQGHTREVVLDKSVCVLVSDILGSATGDAQPAMDAIAGLAAEELYPGGKDGELHIAEHPAGHLVLKWLIEQDKKIKENGKEGCFAKTLVECVGMKNLKSWASINRGAIVLSSLLQSCDQDVVNKVKAGLKTLIPTLEKTKSTSKGIQTLLEKLTA", "length": 647 }, "evidence": [ { "id": "F1SJG9", "url": "https://omabrowser.org/oma/group/F1SJG9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BKS9-1", "protein_name": "Pumilio homolog 3", "gene_name": "Pum3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVKGKKKFTGKSPQTSQGKNKFHKNSESSSSKTFPRKAVKEGGPKVTSKNFEKGATKPGKKGVKQFKNKPQGGKGPKDKFQKANKFSKKRKFQPDGESDESGAKKPKWDDFKKKKKELKQSRQLSDKTNYDIVVRAKHIWESLRRKDCDKEKRVKLMSDLQKLIQGKIKTIAFAHDSTRVIQCFIQYGNEEQRKQAFQELQGDLVELSKAKYSRNIVKKFLMYGSKPQVAEIIRSFKGHVRKMLRHSEASAIVEYAYNDKAILEQRNMLTEELYGNTFQLYKSADHPTLDKVLELQPAKLELIMDEMKQILTPMAQKEAVIKHSLVHKVFLDFFTYAPPKPRSELIEAIREAVVYLAHTHDGARVAMHCLWHGTPKDRKVIVKTMKTYVEKVANGQYSHLVLLAAFDCIDDTKLVKQIIISEIISSLPSIVNDKYGRKVLLYLMSPRDPAHTVPELIELLQKGDGNAHSKKDTAIRRRELLESISPALLSYLQGHTQEVVLDKSACVLVSDMLGSATGDVQPAMDAIASLAAAELHPGGKDGELHVAEHPAGHLVLKWLLEQDKKMKESGKEGCFAKTLVERVGMKNLKSWASINRGAIILSSLLQSCDQEVVNKVKGGLKPLIPTLEKNKSSSRGIQTLLEKLTA", "length": 647 }, "evidence": [ { "id": "F1SJG9", "url": "https://omabrowser.org/oma/group/F1SJG9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WGX5-1", "protein_name": "Pumilio homolog 3", "gene_name": "pum3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEGKPRKKSFTPRDGKKPSFKSKGKPGGKPQGKRPFKPHNNDKGKGFRKSGGEGGPQKFNRKPTDGKFAKKRKFPGDRIKQEEGDERKKPKWDEFKQKKKELKLNRQQTDRKESYQIVSRAKQVWEMVRRKDCDKQKRTKLMKELQDLVKGKIKTIAFAHDSTRVLQCFIQFGSDKQRKEVFDELKEHIVELSKSKYARNIVKKFLMYGSKEQVGEVMLAFKGKVRQMLRHSEASSVVEYAYNDKAILSQRLMLTEELYGNTFTVLKSSVCPTLEKVLEANPGKLESILDEMKQILTPMAQKEAVIKHSLVHKVFLDFFEHAPDKQRTEMIESIREAVVYMAHTHDGARVTMHCLWHGTTKDRKVIVKTMKSYIAKFAMGEYAHLVLLAAFDCIDDTKLVKQIIISEMVSSLSEIISNKHGKKVLLYLLSPRDPAHLLPEIIQVLEKGDGNAHSKKDVLIRRKELLEAASPSLLNHLCENAQSMVMDKSCCVVVSDILGSAVGDLRPAMEAVAALADGPLIPGGKDGQLHMAEHPAGHLVLKWLIEQDTKMKDTEREERFSRILLEKVGLENLKTWASVNRGAIILCCLLQSADESVAEEVKAMLKSSIPELQRLQNSKGIEVLLEKLA", "length": 629 }, "evidence": [ { "id": "F1SJG9", "url": "https://omabrowser.org/oma/group/F1SJG9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ], "pmid": "" }, { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "F1SJG9", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" }, { "start_pos": 634, "end_pos": 636, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJG9" }, { "id": "PS50303", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50303" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PUM-HD", "eco_id": "ECO_0000259", "start_pos": 137, "end_pos": 490, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 28, "end_pos": 30 }, { "start_pos": 634, "end_pos": 636 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJI0-1", "uniprot_ac": "F1SJI0", "uniprot_id": "F1SJI0_PIG", "mass": { "chemical_mass": 106584.0, "monoisotopic_mass": 106584.0 }, "refseq": {}, "gene_names": [ { "name": "ESPNL", "type": "recommended", "evidence": [ { "id": "F1SJI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJI0" } ] } ], "protein_names": [ { "name": "Espin-like protein", "type": "recommended", "evidence": [ { "id": "F1SJI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJI0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Binds to but does not cross-link actin. Required for the formation and maintenance of inner ear hair cell stereocilia and staircase formation. Essential for normal hearing.", "evidence": [ { "database": "UniProtKB", "id": "F1SJI0", "url": "https://www.uniprot.org/uniprotkb/F1SJI0#function" }, { "database": "UniProtKB", "id": "ARBA00056061", "url": "https://www.uniprot.org/uniprotkb/ARBA00056061#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJI0", "url": "https://www.uniprot.org/uniprotkb/F1SJI0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ESPNL", "url": "https://www.uniprot.org/uniprotkb/F1SJI0", "locus": { "chromosome": "15", "start_pos": 137706662, "end_pos": 137675710, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016335", "url": "https://www.ensembl.org/id/ENSSSCG00000016335" } ] } } ], "crossref": [ { "id": "F1SJI0", "url": "https://alphafold.ebi.ac.uk/entry/F1SJI0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016335", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016335", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052420", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052420", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24153", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24153", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24153:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24153:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJI0", "url": "https://www.uniprot.org/uniprotkb/F1SJI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJI0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEQRALVAAQDGDLATLEQLLEAGALGPGITDALGAGLVHHAARAGHLACVKFLVQRAQLPGNQRAHNGATPAHDAAATGSLAELCWLVRDGGCGLQDQDASGVSPLHLAARFGHPVLVEWLLRGGHEATLETLEGALPLHHAAVSGDLTCLKLLTAAHRSGVNRRTRSGASPLYLACQEGHLHLAQFLVKDCGADVHLRALDGMSALHAAAARGHYSLVVWLVTFTDIGLTARDNEGATALHFAARGGHTPILDRLLLMGAPLMRDSWGGTPLHDAAENGQLECCQTLLSHRVDPALRDEDGYTAADLAEYHGHRDCAQYLRDSTRPVPLLMTPPPPPFPPPPLSAAGHSLEDGRRGGPGLRNPSLAFLSPAWPGQPDQPLPGEETARAAPPRATTCAMAIPTRAETAAGGAPDSLVALPLDGLPSGDLDGLVPTRDERGRPIPEWKRQVMVRKLQARLSVEREAQDDGGGAGPPEQAAWRYSQTHQAILGPFGELLTEDDLVYLEKQIADLQLRRRCQEYQSELGRLAAELQALLPAPLVSITVNSHFLPGVPGPEGEEARTLEAQPERSAGPSAGGQPLPFWCSHVARLVRSLSLLLKGVNGLVQGEERPPQEVPREVPREALASPPRSEAQREIQECGVSVQTLRGNFESGRPCTPGPGPCELGAQPGPCSRGCWPVPLPPRGGEPGPGDTEEASDSGISCEEAPSEAGAAPGPELASLRKERIVMLFLGHWKKSAYRPALKTAACRTLEARPAGPLGQEAARGPRLPAPPPSESPRLGHLWQQRSAIAHLLGNWKAILAHVPTRQLRRLSRRPRGPLSPEQFLPHVDGAPVPYSSLTLDLFMLGYFQLLECDLPAEERKMRHLLCFEVFEHLGAHGWEAARAFHKAVTDEVAAGRRAWTDGFEDIKARFFGSSRGPAWDPEPGRKSGLTPLGPLPHATVPSSGSEPTAQRLRSGPQRGSFNSEDICGYIDRSFAFWKEKEAEMFSFGE", "length": 994, "header": "tr|F1SJI0-1|F1SJI0_PIG Isoform 1 of Espin-like protein OS=Sus scrofa OX=9823 GN=ESPNL PE=4 SV=4 CANONICAL=F1SJI0-1" }, "isoforms": [ { "isoform_ac": "F1SJI0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJI0/entry#F1SJI0-1", "sequence": { "sequence": "MEEQRALVAAQDGDLATLEQLLEAGALGPGITDALGAGLVHHAARAGHLACVKFLVQRAQLPGNQRAHNGATPAHDAAATGSLAELCWLVRDGGCGLQDQDASGVSPLHLAARFGHPVLVEWLLRGGHEATLETLEGALPLHHAAVSGDLTCLKLLTAAHRSGVNRRTRSGASPLYLACQEGHLHLAQFLVKDCGADVHLRALDGMSALHAAAARGHYSLVVWLVTFTDIGLTARDNEGATALHFAARGGHTPILDRLLLMGAPLMRDSWGGTPLHDAAENGQLECCQTLLSHRVDPALRDEDGYTAADLAEYHGHRDCAQYLRDSTRPVPLLMTPPPPPFPPPPLSAAGHSLEDGRRGGPGLRNPSLAFLSPAWPGQPDQPLPGEETARAAPPRATTCAMAIPTRAETAAGGAPDSLVALPLDGLPSGDLDGLVPTRDERGRPIPEWKRQVMVRKLQARLSVEREAQDDGGGAGPPEQAAWRYSQTHQAILGPFGELLTEDDLVYLEKQIADLQLRRRCQEYQSELGRLAAELQALLPAPLVSITVNSHFLPGVPGPEGEEARTLEAQPERSAGPSAGGQPLPFWCSHVARLVRSLSLLLKGVNGLVQGEERPPQEVPREVPREALASPPRSEAQREIQECGVSVQTLRGNFESGRPCTPGPGPCELGAQPGPCSRGCWPVPLPPRGGEPGPGDTEEASDSGISCEEAPSEAGAAPGPELASLRKERIVMLFLGHWKKSAYRPALKTAACRTLEARPAGPLGQEAARGPRLPAPPPSESPRLGHLWQQRSAIAHLLGNWKAILAHVPTRQLRRLSRRPRGPLSPEQFLPHVDGAPVPYSSLTLDLFMLGYFQLLECDLPAEERKMRHLLCFEVFEHLGAHGWEAARAFHKAVTDEVAAGRRAWTDGFEDIKARFFGSSRGPAWDPEPGRKSGLTPLGPLPHATVPSSGSEPTAQRLRSGPQRGSFNSEDICGYIDRSFAFWKEKEAEMFSFGE", "length": 994, "header": "tr|F1SJI0-1|F1SJI0_PIG Isoform 1 of Espin-like protein OS=Sus scrofa OX=9823 GN=ESPNL PE=4 SV=4 CANONICAL=F1SJI0-1" }, "locus": { "chromosome": "15", "start_pos": 137702932, "end_pos": 137675710, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017788.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017788.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017307.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017307.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJI0", "url": "https://www.uniprot.org/uniprotkb/F1SJI0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJI0", "url": "https://www.uniprot.org/uniprotkb/F1SJI0" } ], "pmid": "" }, { "name": "stereocilium tip", "id": "GO:0032426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032426", "evidence": [ { "database": "UniProtKB", "id": "F1SJI0", "url": "https://www.uniprot.org/uniprotkb/F1SJI0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SJI0", "url": "https://www.uniprot.org/uniprotkb/F1SJI0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "actin filament bundle assembly", "id": "GO:0051017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051017", "evidence": [ { "database": "UniProtKB", "id": "F1SJI0", "url": "https://www.uniprot.org/uniprotkb/F1SJI0" } ], "pmid": "" }, { "name": "sensory perception of sound", "id": "GO:0007605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007605", "evidence": [ { "database": "UniProtKB", "id": "F1SJI0", "url": "https://www.uniprot.org/uniprotkb/F1SJI0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJI0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 994, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJI0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJI0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJJ3-1", "uniprot_ac": "F1SJJ3", "uniprot_id": "F1SJJ3_PIG", "mass": { "chemical_mass": 64962.0, "monoisotopic_mass": 64962.0 }, "refseq": {}, "gene_names": [ { "name": "LCTL", "type": "recommended", "evidence": [ { "id": "F1SJJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ] } ], "protein_names": [ { "name": "Cytosolic beta-glucosidase", "type": "recommended", "evidence": [ { "id": "F1SJJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3/entry#names_and_taxonomy" } ] }, { "name": "3.2.1.21", "type": "synonym", "evidence": [ { "id": "F1SJJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3/entry#names_and_taxonomy" } ] }, { "name": "3.2.1.45", "type": "synonym", "evidence": [ { "id": "F1SJJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3/entry#names_and_taxonomy" } ] }, { "name": "3.2.1.46", "type": "synonym", "evidence": [ { "id": "F1SJJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3/entry#names_and_taxonomy" } ] }, { "name": "Cytosolic galactosylceramidase", "type": "synonym", "evidence": [ { "id": "F1SJJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3/entry#names_and_taxonomy" } ] }, { "name": "Cytosolic glucosylceramidase", "type": "synonym", "evidence": [ { "id": "F1SJJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3/entry#names_and_taxonomy" } ] }, { "name": "Cytosolic glycosylceramidase", "type": "synonym", "evidence": [ { "id": "F1SJJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LCTL", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3", "locus": { "chromosome": "1", "start_pos": 164526502, "end_pos": 164540118, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004947", "url": "https://www.ensembl.org/id/ENSSSCG00000004947" } ] } } ], "crossref": [ { "id": "F1SJJ3", "url": "https://alphafold.ebi.ac.uk/entry/F1SJJ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004947", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004947", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517209", "url": "https://www.ncbi.nlm.nih.gov/gene/100517209", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517209", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517209", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJJ3", "url": "https://www.orthodb.org/?gene=F1SJJ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10353:SF336", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10353:SF336", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00232", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00232", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "13269", "url": "https://www.rhea-db.org/rhea/13269", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "14297", "url": "https://www.rhea-db.org/rhea/14297", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "43908", "url": "https://www.rhea-db.org/rhea/43908", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "59284", "url": "https://www.rhea-db.org/rhea/59284", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "59288", "url": "https://www.rhea-db.org/rhea/59288", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "59292", "url": "https://www.rhea-db.org/rhea/59292", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "70239", "url": "https://www.rhea-db.org/rhea/70239", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJJ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPVWVVTVWWALLRASTLGATRKGSPEEASFYYGNFPLGFSWGVGSSAFQTEGAWDQDGKGPSIWDAFTHSRKGNVLGDETADVACNSYYKVQEDIALLRELHVSHYRFSLSWPRLLPTGIRADQVNKKGIQFYSDFIDALLKSNITPVVTLHHWDLPQLLQVKYGGWQNASMANYFSDYANLCFEAFGDRVKHWVTFSDPRTLAEKGYETGHHAPGMKLHGTGLYKAAHHIIKAHAQAWHSYNNTWRSKQQGLVGISLNCDWGEPVDISNPEDVEAAERYLQFCLGWFANPIYAGDYPQVMKDRVGRKSAEQGLDMSRLPVFSLQEKSYIKGTSDFLGLGHFTTRYITERKYPSRQGPSYQNDRDLVELVDPNWPDLGSKWLYSVPWGFRRLLNFAQAQYGNPPIYVTENGATQKLHCTQLCDEWRIQYLKEYINEMLKAIKDGANIKGYTSWSLLDKFEWDRGYSDRYGFYYVDFNKRNRPRYPKASVEYYKKIITSNGFPNLREVESWYLKALEICSINNQMLAAEPLLSYMQIVSEIVVPTVCTLCILIAAVLLVLLLRSLS", "length": 567, "header": "tr|F1SJJ3-1|F1SJJ3_PIG Isoform 1 of Cytosolic beta-glucosidase OS=Sus scrofa OX=9823 GN=LCTL PE=3 SV=3 CANONICAL=F1SJJ3-1" }, "isoforms": [ { "isoform_ac": "F1SJJ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3/entry#F1SJJ3-1", "sequence": { "sequence": "MKPVWVVTVWWALLRASTLGATRKGSPEEASFYYGNFPLGFSWGVGSSAFQTEGAWDQDGKGPSIWDAFTHSRKGNVLGDETADVACNSYYKVQEDIALLRELHVSHYRFSLSWPRLLPTGIRADQVNKKGIQFYSDFIDALLKSNITPVVTLHHWDLPQLLQVKYGGWQNASMANYFSDYANLCFEAFGDRVKHWVTFSDPRTLAEKGYETGHHAPGMKLHGTGLYKAAHHIIKAHAQAWHSYNNTWRSKQQGLVGISLNCDWGEPVDISNPEDVEAAERYLQFCLGWFANPIYAGDYPQVMKDRVGRKSAEQGLDMSRLPVFSLQEKSYIKGTSDFLGLGHFTTRYITERKYPSRQGPSYQNDRDLVELVDPNWPDLGSKWLYSVPWGFRRLLNFAQAQYGNPPIYVTENGATQKLHCTQLCDEWRIQYLKEYINEMLKAIKDGANIKGYTSWSLLDKFEWDRGYSDRYGFYYVDFNKRNRPRYPKASVEYYKKIITSNGFPNLREVESWYLKALEICSINNQMLAAEPLLSYMQIVSEIVVPTVCTLCILIAAVLLVLLLRSLS", "length": 567, "header": "tr|F1SJJ3-1|F1SJJ3_PIG Isoform 1 of Cytosolic beta-glucosidase OS=Sus scrofa OX=9823 GN=LCTL PE=3 SV=3 CANONICAL=F1SJJ3-1" }, "locus": { "chromosome": "1", "start_pos": 164540118, "end_pos": 164526505, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005459.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005459.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005324.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005324.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517209", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517209", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "glucosylceramidase activity", "id": "GO:0004348", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004348", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ], "pmid": "" }, { "name": "beta-glucosidase activity", "id": "GO:0008422", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008422", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ], "pmid": "" }, { "name": "galactosylceramidase activity", "id": "GO:0004336", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004336", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ], "pmid": "" }, { "name": "brush border", "id": "GO:0005903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005903", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "carbohydrate catabolic process", "id": "GO:0016052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016052", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ], "pmid": "" }, { "name": "lens morphogenesis in camera-type eye", "id": "GO:0002089", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002089", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ3", "url": "https://www.uniprot.org/uniprotkb/F1SJJ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13269", "name": "", "equation": "a beta-D-glucosyl-(1<->1')-N-acylsphing-4-enine + H2O = an N-acylsphing-4-enine + D-glucose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13269", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13269" } ] }, { "id": "14297", "name": "", "equation": "a beta-D-galactosyl-(1<->1')-N-acylsphing-4-enine + H2O = D-galactose + an N-acylsphing-4-enine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14297", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14297" } ] }, { "id": "43908", "name": "", "equation": "beta-D-galactosyl-(1<->1)-sphing-4-enine + H2O = sphing-4-enine + D-galactose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "43908", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/43908" } ] }, { "id": "59284", "name": "", "equation": "beta-D-glucosyl-(1<->1)-N-octadecanoylsphing-4-enine + H2O = N-octadecanoylsphing-4-enine + D-glucose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59284", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59284" } ] }, { "id": "59288", "name": "", "equation": "beta-D-glucosyl-(1<->1)-sphing-4-enine + H2O = sphing-4-enine + D-glucose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59288", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59288" } ] }, { "id": "59292", "name": "", "equation": "beta-D-galactosyl-(1<->1')-N-octadecanoylsphing-4-enine + H2O = N-octadecanoylsphing-4-enine + D-galactose", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "59292", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/59292" } ] }, { "id": "70239", "name": "", "equation": "a beta-D-xylosyl-(1<->1')-N-acylsphing-4-enine + cholesterol = cholesteryl 3-beta-D-xyloside + an N-acylsphing-4-enine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70239", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70239" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJJ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 567, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJJ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJJ3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 171, "end_pos": 173 }, { "start_pos": 245, "end_pos": 247 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJJ8-1", "uniprot_ac": "F1SJJ8", "uniprot_id": "F1SJJ8_PIG", "mass": { "chemical_mass": 32880.0, "monoisotopic_mass": 32880.0 }, "refseq": { "ac": "XP_001925266", "name": "TIMELESS-interacting protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925266" }, "gene_names": [ { "name": "TIPIN", "type": "recommended", "evidence": [ { "id": "F1SJJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ] }, { "name": "TIPIN", "type": "synonym", "evidence": [ { "id": "XP_001925266", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925266" } ] } ], "protein_names": [ { "name": "TIMELESS-interacting protein", "type": "recommended", "evidence": [ { "id": "F1SJJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8/entry#names_and_taxonomy" } ] }, { "name": "TIMELESS-interacting protein", "type": "synonym", "evidence": [ { "id": "XP_001925266", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925266" } ] } ], "function": [ { "annotation": "Plays an important role in the control of DNA replication and the maintenance of replication fork stability.", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8#function" }, { "database": "UniProtKB", "id": "RU366049", "url": "https://www.uniprot.org/uniprotkb/RU366049#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TIPIN", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8", "locus": { "chromosome": "1", "start_pos": 164350705, "end_pos": 164369223, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004942", "url": "https://www.ensembl.org/id/ENSSSCG00000004942" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004942", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004942", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153268", "url": "https://www.ncbi.nlm.nih.gov/gene/100153268", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012923", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012923", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153268", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153268", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJJ8", "url": "https://www.orthodb.org/?gene=F1SJJ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13220", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13220", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13220:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13220:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07962", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07962", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5693607", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925266", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925266", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJJ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEPQENGLIDLPDYERIEDETFPPFPPPASPERDGEGAEPGEESGRGAPVPVPPKRTVKRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGNKKEVQTCLKRIRLDLPILHDDFISNNDDVGEDNGHDVTVTELDPFLTNSSESAKFASESSRSLTEEQQQRIERNKQLALERRQAKLLSNSQSPGNDLLMNTPSAQTLEKDNKGEDQKEEESNGFNKELLDNPHNDAAANTVNEEEDLNIEITQLDQSF", "length": 289, "header": "tr|F1SJJ8-1|F1SJJ8_PIG Isoform 1 of TIMELESS-interacting protein OS=Sus scrofa OX=9823 GN=TIPIN PE=3 SV=1 CANONICAL=F1SJJ8-1" }, "isoforms": [ { "isoform_ac": "F1SJJ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8/entry#F1SJJ8-1", "sequence": { "sequence": "MLEPQENGLIDLPDYERIEDETFPPFPPPASPERDGEGAEPGEESGRGAPVPVPPKRTVKRNIPKLDAQRLISERGLPALRHVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGNKKEVQTCLKRIRLDLPILHDDFISNNDDVGEDNGHDVTVTELDPFLTNSSESAKFASESSRSLTEEQQQRIERNKQLALERRQAKLLSNSQSPGNDLLMNTPSAQTLEKDNKGEDQKEEESNGFNKELLDNPHNDAAANTVNEEEDLNIEITQLDQSF", "length": 289, "header": "tr|F1SJJ8-1|F1SJJ8_PIG Isoform 1 of TIMELESS-interacting protein OS=Sus scrofa OX=9823 GN=TIPIN PE=3 SV=1 CANONICAL=F1SJJ8-1" }, "locus": { "chromosome": "1", "start_pos": 164367458, "end_pos": 164354266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005454.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005454.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005319.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005319.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153268", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153268", "resource": "KEGG Pathway" }, { "id": "R-SSC-5693607", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "resource": "Reactome", "description": "Processing of DNA double-strand break ends" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA replication checkpoint signaling", "id": "GO:0000076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000076", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" }, { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" }, { "name": "mitotic intra-S DNA damage checkpoint signaling", "id": "GO:0031573", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031573", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" }, { "name": "cell cycle phase transition", "id": "GO:0044770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044770", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" }, { "name": "replication fork arrest", "id": "GO:0043111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043111", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" }, { "name": "replication fork processing", "id": "GO:0031297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031297", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "replication fork protection complex", "id": "GO:0031298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031298", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SJJ8", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJJ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJJ8" }, { "id": "PF07962", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07962" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Chromosome segregation in meiosis protein 3", "eco_id": "ECO_0000259", "start_pos": 65, "end_pos": 145, "start_aa": "Lys", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 179, "end_pos": 181 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJP6-1", "uniprot_ac": "F1SJP6", "uniprot_id": "F1SJP6_PIG", "mass": { "chemical_mass": 17854.0, "monoisotopic_mass": 17854.0 }, "refseq": {}, "gene_names": [ { "name": "NDUFA6", "type": "recommended", "evidence": [ { "id": "F1SJP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJP6" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6", "type": "recommended", "evidence": [ { "id": "F1SJP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJP6/entry#names_and_taxonomy" } ] }, { "name": "Complex I-B14", "type": "synonym", "evidence": [ { "id": "F1SJP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJP6/entry#names_and_taxonomy" } ] }, { "name": "NADH-ubiquinone oxidoreductase B14 subunit", "type": "synonym", "evidence": [ { "id": "F1SJP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJP6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Required for proper complex I assembly. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "F1SJP6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6#function" }, { "database": "UniProtKB", "id": "ARBA00046116", "url": "https://www.uniprot.org/uniprotkb/ARBA00046116#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJP6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFA6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6", "locus": { "chromosome": "5", "start_pos": 6567647, "end_pos": 6562011, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000045", "url": "https://www.ensembl.org/id/ENSSSCG00000000045" } ] } } ], "crossref": [ { "id": "F1SJP6", "url": "https://alphafold.ebi.ac.uk/entry/F1SJP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000045", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000045", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20266", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20266", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "7V2C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V30&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V33&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V3M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VB7", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VB7&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VWJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VWJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYA", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYA&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYF", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYF&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZ1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZ1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W00&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1T&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1V&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1Z&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W20&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W35&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4J&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4N&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4Q&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZO8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZOU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZP8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSK&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSM&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZXZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CE2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6W&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR008011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016488", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016488", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12964", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12964", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12964:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12964:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00007v2c", "url": "https://www.rcsb.org/structure/pdb_00007v2c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2d", "url": "https://www.rcsb.org/structure/pdb_00007v2d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2e", "url": "https://www.rcsb.org/structure/pdb_00007v2e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2f", "url": "https://www.rcsb.org/structure/pdb_00007v2f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2h", "url": "https://www.rcsb.org/structure/pdb_00007v2h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2k", "url": "https://www.rcsb.org/structure/pdb_00007v2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2r", "url": "https://www.rcsb.org/structure/pdb_00007v2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v30", "url": "https://www.rcsb.org/structure/pdb_00007v30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v31", "url": "https://www.rcsb.org/structure/pdb_00007v31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v32", "url": "https://www.rcsb.org/structure/pdb_00007v32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v33", "url": "https://www.rcsb.org/structure/pdb_00007v33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v3m", "url": "https://www.rcsb.org/structure/pdb_00007v3m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vb7", "url": "https://www.rcsb.org/structure/pdb_00007vb7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbn", "url": "https://www.rcsb.org/structure/pdb_00007vbn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbz", "url": "https://www.rcsb.org/structure/pdb_00007vbz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vwj", "url": "https://www.rcsb.org/structure/pdb_00007vwj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxp", "url": "https://www.rcsb.org/structure/pdb_00007vxp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxu", "url": "https://www.rcsb.org/structure/pdb_00007vxu", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy8", "url": "https://www.rcsb.org/structure/pdb_00007vy8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vya", "url": "https://www.rcsb.org/structure/pdb_00007vya", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyf", "url": "https://www.rcsb.org/structure/pdb_00007vyf", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyh", "url": "https://www.rcsb.org/structure/pdb_00007vyh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyn", "url": "https://www.rcsb.org/structure/pdb_00007vyn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vz1", "url": "https://www.rcsb.org/structure/pdb_00007vz1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzv", "url": "https://www.rcsb.org/structure/pdb_00007vzv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzw", "url": "https://www.rcsb.org/structure/pdb_00007vzw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w00", "url": "https://www.rcsb.org/structure/pdb_00007w00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0h", "url": "https://www.rcsb.org/structure/pdb_00007w0h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0r", "url": "https://www.rcsb.org/structure/pdb_00007w0r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1o", "url": "https://www.rcsb.org/structure/pdb_00007w1o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1p", "url": "https://www.rcsb.org/structure/pdb_00007w1p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1t", "url": "https://www.rcsb.org/structure/pdb_00007w1t", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1u", "url": "https://www.rcsb.org/structure/pdb_00007w1u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1v", "url": "https://www.rcsb.org/structure/pdb_00007w1v", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1z", "url": "https://www.rcsb.org/structure/pdb_00007w1z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w20", "url": "https://www.rcsb.org/structure/pdb_00007w20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2k", "url": "https://www.rcsb.org/structure/pdb_00007w2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2l", "url": "https://www.rcsb.org/structure/pdb_00007w2l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2r", "url": "https://www.rcsb.org/structure/pdb_00007w2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2u", "url": "https://www.rcsb.org/structure/pdb_00007w2u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2y", "url": "https://www.rcsb.org/structure/pdb_00007w2y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w31", "url": "https://www.rcsb.org/structure/pdb_00007w31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w32", "url": "https://www.rcsb.org/structure/pdb_00007w32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w35", "url": "https://www.rcsb.org/structure/pdb_00007w35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4c", "url": "https://www.rcsb.org/structure/pdb_00007w4c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4d", "url": "https://www.rcsb.org/structure/pdb_00007w4d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4e", "url": "https://www.rcsb.org/structure/pdb_00007w4e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4f", "url": "https://www.rcsb.org/structure/pdb_00007w4f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4g", "url": "https://www.rcsb.org/structure/pdb_00007w4g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4j", "url": "https://www.rcsb.org/structure/pdb_00007w4j", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4k", "url": "https://www.rcsb.org/structure/pdb_00007w4k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4l", "url": "https://www.rcsb.org/structure/pdb_00007w4l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4m", "url": "https://www.rcsb.org/structure/pdb_00007w4m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4n", "url": "https://www.rcsb.org/structure/pdb_00007w4n", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4q", "url": "https://www.rcsb.org/structure/pdb_00007w4q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zo8", "url": "https://www.rcsb.org/structure/pdb_00008zo8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zou", "url": "https://www.rcsb.org/structure/pdb_00008zou", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zp8", "url": "https://www.rcsb.org/structure/pdb_00008zp8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsk", "url": "https://www.rcsb.org/structure/pdb_00008zsk", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsl", "url": "https://www.rcsb.org/structure/pdb_00008zsl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsm", "url": "https://www.rcsb.org/structure/pdb_00008zsm", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsn", "url": "https://www.rcsb.org/structure/pdb_00008zsn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zso", "url": "https://www.rcsb.org/structure/pdb_00008zso", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsq", "url": "https://www.rcsb.org/structure/pdb_00008zsq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsr", "url": "https://www.rcsb.org/structure/pdb_00008zsr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zxz", "url": "https://www.rcsb.org/structure/pdb_00008zxz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009ce2", "url": "https://www.rcsb.org/structure/pdb_00009ce2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6h", "url": "https://www.rcsb.org/structure/pdb_00009j6h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6w", "url": "https://www.rcsb.org/structure/pdb_00009j6w", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.rcsb.org/structure/7V2C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.rcsb.org/structure/7V2D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.rcsb.org/structure/7V2E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.rcsb.org/structure/7V2F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.rcsb.org/structure/7V2H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.rcsb.org/structure/7V2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.rcsb.org/structure/7V2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.rcsb.org/structure/7V30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.rcsb.org/structure/7V31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.rcsb.org/structure/7V32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.rcsb.org/structure/7V33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.rcsb.org/structure/7V3M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VB7", "url": "https://www.rcsb.org/structure/7VB7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBN", "url": "https://www.rcsb.org/structure/7VBN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBZ", "url": "https://www.rcsb.org/structure/7VBZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VWJ", "url": "https://www.rcsb.org/structure/7VWJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXP", "url": "https://www.rcsb.org/structure/7VXP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXU", "url": "https://www.rcsb.org/structure/7VXU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY8", "url": "https://www.rcsb.org/structure/7VY8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYA", "url": "https://www.rcsb.org/structure/7VYA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYF", "url": "https://www.rcsb.org/structure/7VYF", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYH", "url": "https://www.rcsb.org/structure/7VYH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYN", "url": "https://www.rcsb.org/structure/7VYN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZ1", "url": "https://www.rcsb.org/structure/7VZ1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.rcsb.org/structure/7VZV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.rcsb.org/structure/7VZW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.rcsb.org/structure/7W00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.rcsb.org/structure/7W0H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.rcsb.org/structure/7W0R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.rcsb.org/structure/7W1O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.rcsb.org/structure/7W1P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.rcsb.org/structure/7W1T", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.rcsb.org/structure/7W1U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.rcsb.org/structure/7W1V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.rcsb.org/structure/7W1Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.rcsb.org/structure/7W20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.rcsb.org/structure/7W2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.rcsb.org/structure/7W2L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.rcsb.org/structure/7W2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.rcsb.org/structure/7W2U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.rcsb.org/structure/7W2Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.rcsb.org/structure/7W31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.rcsb.org/structure/7W32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.rcsb.org/structure/7W35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.rcsb.org/structure/7W4C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.rcsb.org/structure/7W4D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.rcsb.org/structure/7W4E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.rcsb.org/structure/7W4F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.rcsb.org/structure/7W4G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.rcsb.org/structure/7W4J", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.rcsb.org/structure/7W4K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.rcsb.org/structure/7W4L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.rcsb.org/structure/7W4M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.rcsb.org/structure/7W4N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.rcsb.org/structure/7W4Q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.rcsb.org/structure/8ZO8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.rcsb.org/structure/8ZOU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.rcsb.org/structure/8ZP8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.rcsb.org/structure/8ZSK", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.rcsb.org/structure/8ZSL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.rcsb.org/structure/8ZSM", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.rcsb.org/structure/8ZSN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.rcsb.org/structure/8ZSO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.rcsb.org/structure/8ZSQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.rcsb.org/structure/8ZSR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.rcsb.org/structure/8ZXZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.rcsb.org/structure/9CE2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.rcsb.org/structure/9J6H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.rcsb.org/structure/9J6W", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF05347", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05347", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6799198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJP6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJP6-1", "url": "https://www.uniprot.org/uniprotkb/F1SJP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRKKRRPQAALKSRKGVVLSCGLFSKMAASGLPRAAAAAGTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFMKNAHVTDPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRPTDFLSKFYVGHDP", "length": 154, "header": "tr|F1SJP6-1|F1SJP6_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Sus scrofa OX=9823 GN=NDUFA6 PE=1 SV=3 CANONICAL=F1SJP6-1" }, "isoforms": [ { "isoform_ac": "F1SJP6-1", "url": "https://www.uniprot.org/uniprotkb/F1SJP6/entry#F1SJP6-1", "sequence": { "sequence": "MRKKRRPQAALKSRKGVVLSCGLFSKMAASGLPRAAAAAGTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFMKNAHVTDPRVVDLLVIKGKMELEETINVWKQRTHIMRFFHETEAPRPTDFLSKFYVGHDP", "length": 154, "header": "tr|F1SJP6-1|F1SJP6_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 OS=Sus scrofa OX=9823 GN=NDUFA6 PE=1 SV=3 CANONICAL=F1SJP6-1" }, "locus": { "chromosome": "5", "start_pos": 6566842, "end_pos": 6562011, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000049.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000049.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000049.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000049.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJP6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "The coupling mechanism of mammalian mitochondrial complex I.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Gu Jinke, Liu Tianya, Guo Runyu, Zhang Laixing, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SJP6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6" } ], "reference": [ { "type": "PubMed", "id": "35145322", "url": "https://glygen.org/publication/PubMed/35145322" } ] } ], "pathway": [ { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SJP6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "F1SJP6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial respiratory chain complex I assembly", "id": "GO:0032981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032981", "evidence": [ { "database": "UniProtKB", "id": "F1SJP6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6" } ], "pmid": "" }, { "name": "respiratory electron transport chain", "id": "GO:0022904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022904", "evidence": [ { "database": "UniProtKB", "id": "F1SJP6", "url": "https://www.uniprot.org/uniprotkb/F1SJP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 154, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJP6" }, { "pdb_id": "7vb7", "pdb_chain": "e", "start_pos": 40, "end_pos": 154, "overlap": "0.75", "method": "Electron_Microscopy", "type": "experimental", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/7vb7.pdb", "url_external": "https://www.rcsb.org/structure/7vb7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJP6" }, { "id": "PF05347", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05347" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Complex 1 LYR protein", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 118, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJP7-1", "uniprot_ac": "F1SJP7", "uniprot_id": "F1SJP7_PIG", "mass": { "chemical_mass": 11563.0, "monoisotopic_mass": 11563.0 }, "refseq": { "ac": "XP_003481576", "name": "essential MCU regulator, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481576" }, "gene_names": [ { "name": "SMDT1", "type": "recommended", "evidence": [ { "id": "F1SJP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJP7" } ] }, { "name": "SMDT1", "type": "synonym", "evidence": [ { "id": "XP_003481576", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481576" } ] } ], "protein_names": [ { "name": "Essential MCU regulator, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SJP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJP7/entry#names_and_taxonomy" } ] }, { "name": "Single-pass membrane protein with aspartate-rich tail 1, mitochondrial", "type": "synonym", "evidence": [ { "id": "F1SJP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJP7/entry#names_and_taxonomy" } ] }, { "name": "essential MCU regulator, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_003481576", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481576" } ] } ], "function": [ { "annotation": "Essential regulatory subunit of the mitochondrial calcium uniporter complex (uniplex), a complex that mediates calcium uptake into mitochondria.", "evidence": [ { "database": "UniProtKB", "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7#function" }, { "database": "UniProtKB", "id": "RU369077", "url": "https://www.uniprot.org/uniprotkb/RU369077#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMDT1", "url": "https://www.uniprot.org/uniprotkb/F1SJP7", "locus": { "chromosome": "5", "start_pos": 6568080, "end_pos": 6571234, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000020945", "url": "https://www.ensembl.org/id/ENSSSCG00000020945" } ] } } ], "crossref": [ { "id": "ENSSSCG00000020945", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000020945", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737924", "url": "https://www.ncbi.nlm.nih.gov/gene/100737924", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737924", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737924", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NISKHEH", "url": "https://omabrowser.org/oma/group/NISKHEH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJP7", "url": "https://www.orthodb.org/?gene=F1SJP7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33904", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33904", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33904:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33904:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8949215", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8949215", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8949664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8949664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9837999", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003481576", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481576", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SJP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRAARWLALAPVRFGAFRSGLSLRKGGDVAAGQGHPGRNLVPSRSVIVTRSGAILPKPVKMSFGLLRVFSIVIPFLYVGTLISKNFAALLEEHDIFVPEDDDDDD", "length": 107, "header": "tr|F1SJP7-1|F1SJP7_PIG Isoform 1 of Essential MCU regulator, mitochondrial OS=Sus scrofa OX=9823 GN=SMDT1 PE=3 SV=1 CANONICAL=F1SJP7-1" }, "isoforms": [ { "isoform_ac": "F1SJP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SJP7/entry#F1SJP7-1", "sequence": { "sequence": "MASRAARWLALAPVRFGAFRSGLSLRKGGDVAAGQGHPGRNLVPSRSVIVTRSGAILPKPVKMSFGLLRVFSIVIPFLYVGTLISKNFAALLEEHDIFVPEDDDDDD", "length": 107, "header": "tr|F1SJP7-1|F1SJP7_PIG Isoform 1 of Essential MCU regulator, mitochondrial OS=Sus scrofa OX=9823 GN=SMDT1 PE=3 SV=1 CANONICAL=F1SJP7-1" }, "locus": { "chromosome": "5", "start_pos": 6571193, "end_pos": 6569625, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000048.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000048.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000048.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000048.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737924", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737924", "resource": "KEGG Pathway" }, { "id": "R-SSC-8949215", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8949215", "resource": "Reactome", "description": "Mitochondrial calcium ion transport" }, { "id": "R-SSC-8949664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8949664", "resource": "Reactome", "description": "Processing of SMDT1" }, { "id": "R-SSC-9837999", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "resource": "Reactome", "description": "Mitochondrial protein degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NJF9-1", "protein_name": "Essential MCU regulator, mitochondrial", "gene_name": "SMDT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAVGGRLLVAGAGRARGGGLRQAPAASLVPSRSATVTRSGAILPKPVKTPFGLLRVFSVVIPFLYVGTQISKNFAALLEEHDIFVPEDDDDDD", "length": 94 }, "evidence": [ { "id": "F1SJP7", "url": "https://omabrowser.org/oma/group/F1SJP7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3I0F5-1", "protein_name": "Essential MCU regulator, mitochondrial", "gene_name": "Smdt1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASAAACRRAWRAVRPGAVWSGLGGKRGGDFSVVPGSSGRSLVPSRSVIVTRSGAILPKPVKMSFGLLRVFSIVVPFLYVGTLISKNFAALLEEHDIFVPEDDDDDD", "length": 107 }, "evidence": [ { "id": "F1SJP7", "url": "https://omabrowser.org/oma/group/F1SJP7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2M2S2-1", "protein_name": "Essential MCU regulator, mitochondrial", "gene_name": "SMDT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASGAARWLALVRVGSGASRSWLSLRKGGDVSAGRSCSGQSLVPTRSVIVTRSGAILPKPVKMSFGLLRVFSIVIPFLYVGTLISKNFAALLEEHDIFVPEDDDDDD", "length": 107 }, "evidence": [ { "id": "F1SJP7", "url": "https://omabrowser.org/oma/group/F1SJP7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9H4I9-1", "protein_name": "Essential MCU regulator, mitochondrial", "gene_name": "SMDT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASGAARWLVLAPVRSGALRSGPSLRKDGDVSAAWSGSGRSLVPSRSVIVTRSGAILPKPVKMSFGLLRVFSIVIPFLYVGTLISKNFAALLEEHDIFVPEDDDDDD", "length": 107 }, "evidence": [ { "id": "F1SJP7", "url": "https://omabrowser.org/oma/group/F1SJP7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7" } ], "pmid": "" }, { "name": "channel activator activity", "id": "GO:0099103", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099103", "evidence": [ { "database": "UniProtKB", "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "calcium import into the mitochondrion", "id": "GO:0036444", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036444", "evidence": [ { "database": "UniProtKB", "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7" } ], "pmid": "" }, { "name": "mitochondrial calcium ion homeostasis", "id": "GO:0051560", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051560", "evidence": [ { "database": "UniProtKB", "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7" } ], "pmid": "" }, { "name": "cellular response to calcium ion starvation", "id": "GO:0072732", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072732", "evidence": [ { "database": "UniProtKB", "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "uniplex complex", "id": "GO:1990246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990246", "evidence": [ { "database": "UniProtKB", "id": "F1SJP7", "url": "https://www.uniprot.org/uniprotkb/F1SJP7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJR3-1", "uniprot_ac": "F1SJR3", "uniprot_id": "F1SJR3_PIG", "mass": { "chemical_mass": 63166.0, "monoisotopic_mass": 63166.0 }, "refseq": { "ac": "XP_003132171", "name": "cysteine/serine-rich nuclear protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132171" }, "gene_names": [ { "name": "CSRNP1", "type": "recommended", "evidence": [ { "id": "F1SJR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ] }, { "name": "CSRNP1", "type": "synonym", "evidence": [ { "id": "XP_003132171", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132171" } ] } ], "protein_names": [ { "name": "Cysteine and serine rich nuclear protein 1", "type": "synonym", "evidence": [ { "id": "F1SJR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJR3/entry#names_and_taxonomy" } ] }, { "name": "cysteine/serine-rich nuclear protein 1", "type": "synonym", "evidence": [ { "id": "XP_003132171", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132171" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CSRNP1", "url": "https://www.uniprot.org/uniprotkb/F1SJR3", "locus": { "chromosome": "13", "start_pos": 23833134, "end_pos": 23845204, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011264", "url": "https://www.ensembl.org/id/ENSSSCG00000011264" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011264", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011264", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519275", "url": "https://www.ncbi.nlm.nih.gov/gene/100519275", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023260", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023260", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519275", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519275", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CGCDCRE", "url": "https://omabrowser.org/oma/group/CGCDCRE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJR3", "url": "https://www.orthodb.org/?gene=F1SJR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13580", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13580", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13580:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13580:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16019", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16019", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132171", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132171", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGLLKRKFDQLDEDSSSLCSSSSLSSSGRCSPACSPSSSVSPAWDSDEESPWDQMPLPDRDFCCPRSFTPLSILKRAPRKRPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMAPRHSACRRFSLAEFTQEQARARHEKLRLRLKEEKLEALQRKLSEAGVPKTEAGLSLTVDSIDDASVEEDLAVALAGGRLEEMTFLQPYPARQRRALLRAAGVRRIDREEKRELQALRQSREDCGCRCDRVCEPETCSCILAGIKCQMDHTAFPCGCCREGCENPKGRVEFNQARVQTHFIHTLTRLQLEQGAESLRELEAPAQGSIPSPSDQVLAPSFPLAKPPMSSKLGDNSCSSDMTDSSTTSGTSEAPDGPAHLTLPGPGLQPNMEDDSLARILSFSDSDLGGEEEEEEEGGVGSLDNLSCFHPADIFGTGDPAGLASWTHSYSSSSLASGILDENANLDASCFLNSGLDGSGESSLPGPLVPGSMDAGQSSSVDLSLSSCDSFELLQALPDYSLGPHYTSRKVSDSLDNLEAPHFALPAFSPPGDTSTCFLESIMGFSEPAAEALPPFVDSQLFEDTAPASLVEPVPV", "length": 588, "header": "tr|F1SJR3-1|F1SJR3_PIG Isoform 1 of Cysteine and serine rich nuclear protein 1 OS=Sus scrofa OX=9823 GN=CSRNP1 PE=3 SV=1 CANONICAL=F1SJR3-1" }, "isoforms": [ { "isoform_ac": "F1SJR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SJR3/entry#F1SJR3-1", "sequence": { "sequence": "MTGLLKRKFDQLDEDSSSLCSSSSLSSSGRCSPACSPSSSVSPAWDSDEESPWDQMPLPDRDFCCPRSFTPLSILKRAPRKRPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMAPRHSACRRFSLAEFTQEQARARHEKLRLRLKEEKLEALQRKLSEAGVPKTEAGLSLTVDSIDDASVEEDLAVALAGGRLEEMTFLQPYPARQRRALLRAAGVRRIDREEKRELQALRQSREDCGCRCDRVCEPETCSCILAGIKCQMDHTAFPCGCCREGCENPKGRVEFNQARVQTHFIHTLTRLQLEQGAESLRELEAPAQGSIPSPSDQVLAPSFPLAKPPMSSKLGDNSCSSDMTDSSTTSGTSEAPDGPAHLTLPGPGLQPNMEDDSLARILSFSDSDLGGEEEEEEEGGVGSLDNLSCFHPADIFGTGDPAGLASWTHSYSSSSLASGILDENANLDASCFLNSGLDGSGESSLPGPLVPGSMDAGQSSSVDLSLSSCDSFELLQALPDYSLGPHYTSRKVSDSLDNLEAPHFALPAFSPPGDTSTCFLESIMGFSEPAAEALPPFVDSQLFEDTAPASLVEPVPV", "length": 588, "header": "tr|F1SJR3-1|F1SJR3_PIG Isoform 1 of Cysteine and serine rich nuclear protein 1 OS=Sus scrofa OX=9823 GN=CSRNP1 PE=3 SV=1 CANONICAL=F1SJR3-1" }, "locus": { "chromosome": "13", "start_pos": 23838487, "end_pos": 23834313, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012332.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012332.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012010.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012010.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519275", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519275", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1ADP4-1", "protein_name": "Cysteine and serine rich nuclear protein 1", "gene_name": "CSRNP1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWTRRYFILDFISEVSFISRHLELYERYGVTMSGVLKRKYEELGDDSTYCSSSSCSPLSSSASSGWDSDEDSSRGDSKPSSAIAPGFTPTSILKKSKRLKKNNVEFDRVTVFYFPRCQGFTSVPSRGGCTLGMVSKHSSSRQFTLAEFSKEQENIRREKLEEKLKEEKLEALKWKLTMNGTKESEEANQLTIEDISDDDIDVSNVDLEDGFFLQPYPAKKRRALLKAVGVKKIDKEEKRELHSIRLSREDCGCDCQEVCDPETCSCSLAGIKCQMDHTSFPCGCTKDGCGNTEGRIEFNQARVQTHFIHTIMKLELEKQQQSSEGVAEVEPPFRERLPQLGCAAAKGPLEERTAPLAPAFQFSPELEALGENSCSSDMTDSSISSHPSEDLEEPYESLPSDKSQSDIDDDGLARILHFNDSDAEEEGDRCQDNLSCFHPADFFIEDHGCEAKPGPGASSHLSECLDENANQDSGGLLEEAMHVCCDGVSCCAPAPAESCSKSYADLSLSSDSLDFFQSFSDYNLGPLYNSLKEYENLDNFSALQFQLPNFPGFPQAGDQGSCFLESLIGLSESVPETPAPFTDNQLLEDAIKSSLMETVKV", "length": 601 }, "evidence": [ { "id": "F1SJR3", "url": "https://omabrowser.org/oma/group/F1SJR3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9QH67-1", "protein_name": "Cysteine/serine-rich nuclear protein 1b isoform X1", "gene_name": "csrnp1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSGVLKRKYEEVAEDPCYSSSSPSSLSSSAYSEWDSDGESCYSDTLDSTPSNPSSPATSLNTTSILKKAKRTRRGNVQFDQVTVFFFPRCQGFTSVPSRGGCTLGMMQRHSAQRRYTLAEFAIAQRHLRREKLKNRMREEKLEALKLKLTKNGTQESEEAEKLTVDDIPEDEIDLSGVNVDDGSFLHPYPSKKRYAILKAAGVKKIDREEKRQLHELRTSREDCGCDCQGFCEPETCSCSLAGIKCQMDHSSFPCGCTKDGCGNTQGRIEFNSSRVHTHYIHTIMKLELEKRLEEHTTETPPETHPDSSSLNQPAEISSTPDMPTFHFNSELLSTGENSCSSDMTDSSSSSGQSEDSESVENVPSEQSPLDVDENGLTRILSFSDTDNEDCSIRERNDNCDYQQKKSEGSMGYGIFSTEDDKLNMSQTDNSRTAMSELLDENANQGNGLFHSSFIPHTPSPSIDHSASYMDLSLSSESDLEFFDGFPCLGPSSLYNSLKEYEHVDNFFQFQLPTYPSLPQAVDPGTCLLESLIGLSDSVPEPPTTFTDNQMLEDAMKLSVMESLKV", "length": 566 }, "evidence": [ { "id": "F1SJR3", "url": "https://omabrowser.org/oma/group/F1SJR3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1MDN9-1", "protein_name": "Cysteine and serine rich nuclear protein 1", "gene_name": "CSRNP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGLLKRKFDQLDEDSSSLCSSSSLSSSGHHSPSCSPSSSVSPAWDSDEESPWDQLPLPDGDFCGPRSFTPLSILKRAPRKRRGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMASRHSACRRFSLAEFTQEQARARQEKLRLRLKEEKLEALRWKLSETGVPKTEAGLPLTVDAIDDASVEEDLALAVAGGRLEEMTFLQPFPARKRRALLRASGVRRIDREEKRELQALRQSREDCGCRCDRVCDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPKGRVEFNQARVQTHFIHTLTRLQLEQGAESLGELEAPAQGGTPSPGEQVLASAFPLAKPPVSSELGDNSCSSDMTDSSTASGTSEALDGPARLALPGPGFQPGVDDDGLARILSFSDSELGGHEEEEEDGGVGGLDNLSCFHPADIFGTGDLTGLASWTHSYSSSSLTSGILDENANLDASCFLNSGLEGLGEGSFPGPLVPASTDAGQSSSVDLSLSSCDSFELLQALPDYSLGPHYTSRKVSDSLDHLEVPHFTLPAFSPPADTSTCFLESIMGLTEPAAEALAPFVDGQLFEDTTPASLVEPVPV", "length": 588 }, "evidence": [ { "id": "F1SJR3", "url": "https://omabrowser.org/oma/group/F1SJR3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P59054-1", "protein_name": "Cysteine/serine-rich nuclear protein 1", "gene_name": "Csrnp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGLLKRKFDQLEEDDSSSSSSSSFSSRLSLSSFPASSASPAWNSDEEGPGGQAPQSDQDSCGLQSFTPPSILKRAPRERPGHVAFNGITVYYFPRCQGFTSVPSRGGCTLGMASRHSTCRLFSLAEFTQEQVRARREKLRRRLKEEKLEMLRWKFSVAGVPESGAGVPLTADAIDDASVEEDLAVAVANGRLEEANFLQPHPPRQRRALLRASGVRRIDREEKRELQVLRQSREDCGCHCDGVCDPETCSCSLAGIKCQMDHTSFPCGCCREGCENPNGRVEFNQTRVQTHFIHTLTRLQMEQGAESLGDLESPVEDTPVEQAALSPFPPSKPPVSSELGDSSCSSDMTDSSTTLSSGSSEPPNHPAHPSLPGPSFRSGVDEDSLEQILNFSDSDLGIEEEEEEGGGVGNLDNLSCFHLADIFGTGDPGSLASWTHSQSGSSLASGILDENANLDASCFLNSGLGGLREGSLPGSSGSPEGDAVQSSSWDLSLSSCDSFELLQALPDYSLGPHYTSRRVSGSPDSLETFHPLPSFSPPRDASTCFLESLVGLSEPVTEVLAPLLESQFEDAALAPLLEPVPV", "length": 583 }, "evidence": [ { "id": "F1SJR3", "url": "https://omabrowser.org/oma/group/F1SJR3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96S65-1", "protein_name": "Cysteine/serine-rich nuclear protein 1", "gene_name": "CSRNP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRDFCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSACRRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRLQLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNLSCFHPADIFGTSDPGGLASWTHSYSGCSFTSGVLDENANLDASCFLNGGLEGSREGSLPGTSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLPGLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV", "length": 589 }, "evidence": [ { "id": "F1SJR3", "url": "https://omabrowser.org/oma/group/F1SJR3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SJR3", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 417, "end_pos": 419, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJR3" }, { "id": "PF16019", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16019" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cysteine/serine-rich nuclear protein N-terminal", "eco_id": "ECO_0000259", "start_pos": 83, "end_pos": 306, "start_aa": "Pro", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 417, "end_pos": 419 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJU2-1", "uniprot_ac": "F1SJU2", "uniprot_id": "F1SJU2_PIG", "mass": { "chemical_mass": 30091.0, "monoisotopic_mass": 30091.0 }, "refseq": {}, "gene_names": [ { "name": "SULT4A1", "type": "recommended", "evidence": [ { "id": "F1SJU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" } ] } ], "protein_names": [ { "name": "Sulfotransferase", "type": "recommended", "evidence": [ { "id": "F1SJU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU2/entry#names_and_taxonomy" } ] }, { "name": "2.8.2.-", "type": "synonym", "evidence": [ { "id": "F1SJU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJU2", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SULT4A1", "url": "https://www.uniprot.org/uniprotkb/F1SJU2", "locus": { "chromosome": "5", "start_pos": 5156894, "end_pos": 5131252, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000026", "url": "https://www.ensembl.org/id/ENSSSCG00000000026" } ] } } ], "crossref": [ { "id": "F1SJU2", "url": "https://alphafold.ebi.ac.uk/entry/F1SJU2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000026", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000026", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MVESCHQ", "url": "https://omabrowser.org/oma/group/MVESCHQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11783", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11783", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00685", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156584", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156584", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "70607", "url": "https://www.rhea-db.org/rhea/70607", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SJU2", "url": "https://www.uniprot.org/uniprotkb/F1SJU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJU2-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAESEAETPSTPGEFESKYFEFHGVRLPPFCRGKMEEIANFPVRPSDVWIVTYPKSGTSLLQEVVYLVSQGADPDEIGLMNIDEQLPVLEYPQPGLDIIKELTSPRLIKSHLPYRFLPSDLHNGDSKVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQEFCRRFMNDKLGYGSWFEHVQEFWEHRMDSNVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLESLIEHCHHWWTSAATPRPCPWVGDESGSGRTSSLSP", "length": 260, "header": "tr|F1SJU2-1|F1SJU2_PIG Isoform 1 of Sulfotransferase OS=Sus scrofa OX=9823 GN=SULT4A1 PE=1 SV=5 CANONICAL=F1SJU2-1" }, "isoforms": [ { "isoform_ac": "F1SJU2-1", "url": "https://www.uniprot.org/uniprotkb/F1SJU2/entry#F1SJU2-1", "sequence": { "sequence": "MAESEAETPSTPGEFESKYFEFHGVRLPPFCRGKMEEIANFPVRPSDVWIVTYPKSGTSLLQEVVYLVSQGADPDEIGLMNIDEQLPVLEYPQPGLDIIKELTSPRLIKSHLPYRFLPSDLHNGDSKVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQEFCRRFMNDKLGYGSWFEHVQEFWEHRMDSNVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLESLIEHCHHWWTSAATPRPCPWVGDESGSGRTSSLSP", "length": 260, "header": "tr|F1SJU2-1|F1SJU2_PIG Isoform 1 of Sulfotransferase OS=Sus scrofa OX=9823 GN=SULT4A1 PE=1 SV=5 CANONICAL=F1SJU2-1" }, "locus": { "chromosome": "5", "start_pos": 5155533, "end_pos": 5131336, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000027.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000027.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000027.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000027.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJU2", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-156584", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156584", "resource": "Reactome", "description": "Cytosolic sulfonation of small molecules" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C8B2-1", "protein_name": "Sulfotransferase", "gene_name": "SULT4A1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAESEAETPSTPGEFESKYFEYNGVRLPPFCRGKMEEIANFPVRDSDVWIVTYPKSGTGLLQEVVYLVSQGADPDEIGLMNIDEQLPVLEYPQPGLDIIKELTSPRLIKSHLPYRFLPSDLHNGNSKVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQEFCRRFMNDKLGYGSWFEHVQEFWEHHMDANVLFLKYEDMHKDLATMVEQLVRFLGVSYDKAQLESMVEHCHQLIDQCCNAEALPVGRGRVGLWKDIFTVSMNEKFDLVYKQKMGKCDLTFDFYL", "length": 284 }, "evidence": [ { "id": "F1SJU2", "url": "https://omabrowser.org/oma/group/F1SJU2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P63046-1", "protein_name": "Sulfotransferase 4A1", "gene_name": "Sult4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAESEAETPGTPGEFESKYFEFHGVRLPPFCRGKMEDIADFPVRPSDVWIVTYPKSGTSLLQEVVYLVSQGADPDEIGLMNIDEQLPVLEYPQPGLDIIKELTSPRLIKSHLPYRFLPSDLHNGDSKVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQEFCRRFMNDKLGYGSWFEHVQEFWEHRMDANVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLESLIEHCHQLVDQCCNAEALPVGRGRVGLWKDIFTVSMNEKFDLVYKQKMGKCDLTFDFYL", "length": 284 }, "evidence": [ { "id": "F1SJU2", "url": "https://omabrowser.org/oma/group/F1SJU2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P63047-1", "protein_name": "Sulfotransferase 4A1", "gene_name": "Sult4a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAESEAETPGTPGEFESKYFEFHGVRLPPFCRGKMEDIADFPVRPSDVWIVTYPKSGTSLLQEVVYLVSQGADPDEIGLMNIDEQLPVLEYPQPGLDIIKELTSPRLIKSHLPYRFLPSDLHNGDSKVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQEFCRRFMNDKLGYGSWFEHVQEFWEHRMDANVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLESLIEHCHQLVDQCCNAEALPVGRGRVGLWKDIFTVSMNEKFDLVYKQKMGKCDLTFDFYL", "length": 284 }, "evidence": [ { "id": "F1SJU2", "url": "https://omabrowser.org/oma/group/F1SJU2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BR01-1", "protein_name": "Sulfotransferase 4A1", "gene_name": "SULT4A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAESEAETPSTPGEFESKYFEFHGVRLPPFCRGKMEEIANFPVRPSDVWIVTYPKSGTSLLQEVVYLVSQGADPDEIGLMNIDEQLPVLEYPQPGLDIIKELTSPRLIKSHLPYRFLPSDLHNGDSKVIYMARNPKDLVVSYYQFHRSLRTMSYRGTFQEFCRRFMNDKLGYGSWFEHVQEFWEHRMDSNVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLEALTEHCHQLVDQCCNAEALPVGRGRVGLWKDIFTVSMNEKFDLVYKQKMGKCDLTFDFYL", "length": 284 }, "evidence": [ { "id": "F1SJU2", "url": "https://omabrowser.org/oma/group/F1SJU2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "sulfotransferase activity", "id": "GO:0008146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008146", "evidence": [ { "database": "UniProtKB", "id": "F1SJU2", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SJU2", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sulfation", "id": "GO:0051923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051923", "evidence": [ { "database": "UniProtKB", "id": "F1SJU2", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SJU2", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SJU2", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SJU2", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "70607", "name": "", "equation": "4-ethylphenol + 3'-phosphoadenylyl sulfate = 4-ethylphenyl sulfate + adenosine 3',5'-bisphosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70607", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70607" } ] }, { "id": "R-SSC-176585", "name": "3,5,3'-triiodothyronine + PAPS => 3,5,3'-triiodothyronine 4-sulfate + PAP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-176667" ], "output_participant_list": [ "R-ALL-176564" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-176585", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176585" } ] }, { "id": "R-SSC-176646", "name": "p-nitrophenol + PAPS => p-nitrophenol sulfate + PAP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-5695950" ], "output_participant_list": [ "R-ALL-176600" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-176646", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176646" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-176564", "participant_name": "3,5,3'-triiodothyronine 4-sulfate [cytosol]", "crossref": [ { "id": "ZINC000085552312", "database": "ZINC", "url": "" }, { "id": "35432", "database": "ChEBI", "url": "" }, { "id": "HMDB0003036", "database": "HMDB Metabolite", "url": "" }, { "id": "11533680", "database": "PubChem Substance", "url": "" } ] }, { "participant_id": "R-ALL-176600", "participant_name": "p-nitrophenol sulfate [cytosol]", "crossref": [ { "id": "ZINC000001633996", "database": "ZINC", "url": "" }, { "id": "35422", "database": "ChEBI", "url": "" }, { "id": "11533685", "database": "PubChem Substance", "url": "" }, { "id": "HMDB0006492", "database": "HMDB Metabolite", "url": "" } ] }, { "participant_id": "R-ALL-176667", "participant_name": "T3 [cytosol]", "crossref": [ { "id": "533015", "database": "ChEBI", "url": "" }, { "id": "ZINC000003830999", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-5695950", "participant_name": "PNP [cytosol]", "crossref": [ { "id": "16836", "database": "ChEBI", "url": "" }, { "id": "8143627", "database": "PubChem Substance", "url": "" }, { "id": "C00870", "database": "COMPOUND", "url": "" }, { "id": "ZINC000034828682", "database": "ZINC", "url": "" }, { "id": "HMDB0001232", "database": "HMDB Metabolite", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJU2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 260, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJU2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJU2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJU2" }, { "id": "PF00685", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sulfotransferase", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 231, "start_aa": "Pro", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJV0-1", "uniprot_ac": "F1SJV0", "uniprot_id": "F1SJV0_PIG", "mass": { "chemical_mass": 72882.0, "monoisotopic_mass": 72882.0 }, "refseq": {}, "gene_names": [ { "name": "BUD13", "type": "recommended", "evidence": [ { "id": "F1SJV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJV0" } ] } ], "protein_names": [ { "name": "BUD13 homolog", "type": "recommended", "evidence": [ { "id": "F1SJV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJV0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJV0", "url": "https://www.uniprot.org/uniprotkb/F1SJV0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BUD13", "url": "https://www.uniprot.org/uniprotkb/F1SJV0", "locus": { "chromosome": "9", "start_pos": 44078195, "end_pos": 44165249, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015065", "url": "https://www.ensembl.org/id/ENSSSCG00000015065" } ] } } ], "crossref": [ { "id": "F1SJV0", "url": "https://alphafold.ebi.ac.uk/entry/F1SJV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015065", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015065", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31809", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31809", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31809:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31809:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJV0", "url": "https://www.uniprot.org/uniprotkb/F1SJV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJV0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAPPLSKAEYLKRYLSGADAGVDGGPESGRKRRKKRPKTGGAGGKGMRIVDDDVSWSSISTTKLEKEEEEDDGDLPVVAEFVDERPEEVKQMEAFRSSAKWKLLGGHNEDLPSHRHFRRDTPDASPPRRARHDTPDSSPPGKVRHDTPDSSPPRRARHDSPDPSPPRKVHHDTPDPSPPRRARHDTPDPSPPRRARHDTPDPSPPRRARHDTPDPSPPRRAHRSSSDISPPRRARNRSPDTVQPRRTLDSMDTSQLRRARHDSPDLASSVPHSLPRTKSSTAPERASSQASPHWKGPGPSHPSLPKNSKQECDSDLSPPRKKQAKSHSGNKQHDSKGSSPRHRKCHTGSSPRKHHSHMLDSSSYPSDHRRASDSDLSPPRHKQSSGPRDSDSDLSPPRNRPRHQSSDSDLSPPRRKQRARSSDSDLSPPRRSQPLGKKAAHMYSGAKTGLVLTDIQREQQELKKRDQETVALEAEFQYAETVFRDKSGRKRNLKLERLEQRRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQEREGDPMANFIKKNKAKENKTKKVRPRYNGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYNLQHPAQSLA", "length": 644, "header": "tr|F1SJV0-1|F1SJV0_PIG Isoform 1 of BUD13 homolog OS=Sus scrofa OX=9823 GN=BUD13 PE=3 SV=3 CANONICAL=F1SJV0-1" }, "isoforms": [ { "isoform_ac": "F1SJV0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJV0/entry#F1SJV0-1", "sequence": { "sequence": "MAAAPPLSKAEYLKRYLSGADAGVDGGPESGRKRRKKRPKTGGAGGKGMRIVDDDVSWSSISTTKLEKEEEEDDGDLPVVAEFVDERPEEVKQMEAFRSSAKWKLLGGHNEDLPSHRHFRRDTPDASPPRRARHDTPDSSPPGKVRHDTPDSSPPRRARHDSPDPSPPRKVHHDTPDPSPPRRARHDTPDPSPPRRARHDTPDPSPPRRARHDTPDPSPPRRAHRSSSDISPPRRARNRSPDTVQPRRTLDSMDTSQLRRARHDSPDLASSVPHSLPRTKSSTAPERASSQASPHWKGPGPSHPSLPKNSKQECDSDLSPPRKKQAKSHSGNKQHDSKGSSPRHRKCHTGSSPRKHHSHMLDSSSYPSDHRRASDSDLSPPRHKQSSGPRDSDSDLSPPRNRPRHQSSDSDLSPPRRKQRARSSDSDLSPPRRSQPLGKKAAHMYSGAKTGLVLTDIQREQQELKKRDQETVALEAEFQYAETVFRDKSGRKRNLKLERLEQRRKAEKDSERDELYAQWGKGLAQSRQQQQNVEDAMKEMQKPLARYIDDEDLDRMLREQEREGDPMANFIKKNKAKENKTKKVRPRYNGPAPPPNRFNIWPGYRWDGVDRSNGFEQKRFARLASKKAVEELAYNLQHPAQSLA", "length": 644, "header": "tr|F1SJV0-1|F1SJV0_PIG Isoform 1 of BUD13 homolog OS=Sus scrofa OX=9823 GN=BUD13 PE=3 SV=3 CANONICAL=F1SJV0-1" }, "locus": { "chromosome": "9", "start_pos": 44165234, "end_pos": 44120848, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016431.3", "url": "https://www.ensembl.org/id/ENSSSCT00000016431.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015989.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015989.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJV0", "url": "https://www.uniprot.org/uniprotkb/F1SJV0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SJV0", "url": "https://www.uniprot.org/uniprotkb/F1SJV0" } ], "pmid": "" }, { "name": "U2-type spliceosomal complex", "id": "GO:0005684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005684", "evidence": [ { "database": "UniProtKB", "id": "F1SJV0", "url": "https://www.uniprot.org/uniprotkb/F1SJV0" } ], "pmid": "" }, { "name": "U2-type precatalytic spliceosome", "id": "GO:0071005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071005", "evidence": [ { "database": "UniProtKB", "id": "F1SJV0", "url": "https://www.uniprot.org/uniprotkb/F1SJV0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F1SJV0", "url": "https://www.uniprot.org/uniprotkb/F1SJV0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 579, "end_pos": 581, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJV0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 644, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJV0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJV0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 238, "end_pos": 240 }, { "start_pos": 579, "end_pos": 581 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJX0-1", "uniprot_ac": "F1SJX0", "uniprot_id": "F1SJX0_PIG", "mass": { "chemical_mass": 58985.0, "monoisotopic_mass": 58985.0 }, "refseq": { "ac": "XP_001928867", "name": "transmembrane protein 266 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928867" }, "gene_names": [ { "name": "TMEM266", "type": "recommended", "evidence": [ { "id": "F1SJX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ] }, { "name": "TMEM266", "type": "synonym", "evidence": [ { "id": "XP_001928867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928867" } ] } ], "protein_names": [ { "name": "Transmembrane protein 266", "type": "recommended", "evidence": [ { "id": "F1SJX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJX0/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 266 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001928867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928867" } ] } ], "function": [ { "annotation": "Voltage-sensor protein present on the post-synaptic side of glutamatergic mossy fibers and granule cells in the cerebellum. Despite the presence of a voltage-sensor segment, does not form a functional ion channel and its precise role remains unclear. Undergoes both rapid and slow structural rearrangements in response to changes in voltage. Contains a zinc-binding site that can regulate the slow conformational transition.", "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0#function" }, { "database": "UniProtKB", "id": "ARBA00056548", "url": "https://www.uniprot.org/uniprotkb/ARBA00056548#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM266", "url": "https://www.uniprot.org/uniprotkb/F1SJX0", "locus": { "chromosome": "7", "start_pos": 56440328, "end_pos": 56311548, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001863", "url": "https://www.ensembl.org/id/ENSSSCG00000001863" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001863", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001863", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152648", "url": "https://www.ncbi.nlm.nih.gov/gene/100152648", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152648", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152648", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FQFATII", "url": "https://omabrowser.org/oma/group/FQFATII/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJX0", "url": "https://www.orthodb.org/?gene=F1SJX0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46842", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46842", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46842:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46842:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928867", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928867", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJX0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJX0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALVASFNMTNPQPATEGGISEVEIISQQVDEETKSIAPVQLVNFAYRDLPLAAADLSTAGSQLLSNLDEDYQREGSTWLKPCCGKRAAVWQVFLLSASVNSFLVACVILVVILLTLELLIDIKLLQFSSAFQFAGVIHWISLVILSVFFSETVLRIVVLGIWDYIENKIEVFDGAVIILSLAPMVASTVANGPRSPWDAISLIIMLRIWRVKRVIDAYVLPVKVEMEMVIQQYEKAKVIQDEQLERLTQICQEQGFEIRQLRAHLAQQDLDLAAEREAALQAPHVLSQPRSRYKVVEAGTWAEETAAESVVEELQPAREAAAKDDMNSYISQYYNGPSSDSGVPEPAMCVVTTAAIDIHQPNISSDLFSVDVPLKLGSDGTCASATSESTSRSTRSSVTRAQSDSSQTLGSTTDCSTAREEPSSEPSPAPLPLPPPPQQQVAEAMVQDLFSSLSEDPCPSRRALDPALLARPSPAGSAQTSPELEHRVSLFNQKNQEGFAVFQIEPVIHFQPTLPGLEEKFRSLESKEQKLHRVPEA", "length": 538, "header": "tr|F1SJX0-1|F1SJX0_PIG Isoform 1 of Transmembrane protein 266 OS=Sus scrofa OX=9823 GN=TMEM266 PE=4 SV=1 CANONICAL=F1SJX0-1" }, "isoforms": [ { "isoform_ac": "F1SJX0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJX0/entry#F1SJX0-1", "sequence": { "sequence": "MALVASFNMTNPQPATEGGISEVEIISQQVDEETKSIAPVQLVNFAYRDLPLAAADLSTAGSQLLSNLDEDYQREGSTWLKPCCGKRAAVWQVFLLSASVNSFLVACVILVVILLTLELLIDIKLLQFSSAFQFAGVIHWISLVILSVFFSETVLRIVVLGIWDYIENKIEVFDGAVIILSLAPMVASTVANGPRSPWDAISLIIMLRIWRVKRVIDAYVLPVKVEMEMVIQQYEKAKVIQDEQLERLTQICQEQGFEIRQLRAHLAQQDLDLAAEREAALQAPHVLSQPRSRYKVVEAGTWAEETAAESVVEELQPAREAAAKDDMNSYISQYYNGPSSDSGVPEPAMCVVTTAAIDIHQPNISSDLFSVDVPLKLGSDGTCASATSESTSRSTRSSVTRAQSDSSQTLGSTTDCSTAREEPSSEPSPAPLPLPPPPQQQVAEAMVQDLFSSLSEDPCPSRRALDPALLARPSPAGSAQTSPELEHRVSLFNQKNQEGFAVFQIEPVIHFQPTLPGLEEKFRSLESKEQKLHRVPEA", "length": 538, "header": "tr|F1SJX0-1|F1SJX0_PIG Isoform 1 of Transmembrane protein 266 OS=Sus scrofa OX=9823 GN=TMEM266 PE=4 SV=1 CANONICAL=F1SJX0-1" }, "locus": { "chromosome": "7", "start_pos": 56439324, "end_pos": 56364122, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002088.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002088.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002038.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002038.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152648", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152648", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LJW1-1", "protein_name": "Transmembrane protein 266", "gene_name": "Tmem266", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MALVASFNMTNPQPAIEGGISEVEIISQQVDEETKSIAPVQLVNFAYRDLPLAAVDLSTGGSQLLSNLDEEYQREGSNWLKPCCGKRAAVWQVFLLSASLNSFLVACVILVVILLTLELLIDIKLLQFSSAFQFAGVIHWISLVILSVFFSETVLRIVVLGIWDYIENKIEVFDGAVIILSLAPMVASTVANGPRSPWDAISLIIMFRIWRVKRVIDAYILPVKLEVEMVTQQYEKAKAIQEEQLERLTQICQEQGFEIRQLRAHLAQQDLDLAAEREAALQAPHMLSQPRSRYKVVEASTWAEETAAESIVEEMRPSQEATVKDDMNSYINQYYNGPSSDSGVPEPAVCVVTTAAIDIHQPNISSDLFSVDLPLKLSGNSTCTSATSEITSHSTCGSVTRAQSASSQTLGSSTDCSTPREEPSSEAGPSPLPLLPPPQQQVAEATVQDLISSLSKDPCPSHKALDPAPLAQPLPEGSAQTSPELEHRVSLFNQKNQEALPVLQIKPVIHLPPTAGLEEKFRSLESKEPKLHRVPEA", "length": 537 }, "evidence": [ { "id": "F1SJX0", "url": "https://omabrowser.org/oma/group/F1SJX0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZYW8-1", "protein_name": "Transmembrane protein 266", "gene_name": "Tmem266", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASPQPAIEGGISEVEIISQQVDEETKNIAPVQLVNFAYRDLPLAAVDLSTGGSQLLSNLDEEYQREGSNWLKPCCGKRAAVWQVLLLSASLNSFLVACVILVVILLTLELLIDIKLLQFSSAFQFAAVIHWISLVILSVFFSETILRIVVLGIWDYIENKIEVFDGAVIILSLAPMVASTVANGPRSPWDAISLIIMFRIWRVKRVIDAYVLPVKLEMEMVTQQYEKAKAIQDEHLERLTQICQEQGFEIRQLRAHLAQQDLDLAAEREAALQAPHVLSQPRSRYKVVEAGTWAEETAAESIMEELRPSQEAMVKDDMNSYISQYYNGPSSDSGAPEPAVCVVTTAAIDIHQPNITSDLFSVDLPLKLSGNSTCASATSETTSHPTCGSVTRAQSASSQTLGSSTDCSTPREELSSKPISSPLPLLLPPQQLVAEATVQDLMSSLSKDPCPSHKALDPAPLAQPTPVGSVQTSPELEHRVSLFNQKNQEALPVLQIKPVIHLQPTAGLEEKFRSLESKEPKLHTVPET", "length": 529 }, "evidence": [ { "id": "F1SJX0", "url": "https://omabrowser.org/oma/group/F1SJX0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2M3C6-1", "protein_name": "Transmembrane protein 266", "gene_name": "TMEM266", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTNPQPAIEGGISEVEIISQQVDEETKSIAPVQLVNFAYRDLPLAAVDLSTAGSQLLSNLDEDYQREGSNWLKPCCGKRAAVWQVFLLSASLNSFLVACVILVVILLTLELLIDIKLLQFSSAFQFAGVIHWISLVILSVFFSETVLRIVVLGIWDYIENKIEVFDGAVIILSLAPMVASTVANGPRSPWDAISLIIMLRIWRVKRVIDAYVLPVKLEMEMVIQQYEKAKVIQDEQLERLTQICQEQGFEIRQLRAHLAQQDLDLAAEREAALQAPHVLSQPRSRFKVLEAGTWDEETAAESVVEELQPSQEATMKDDMNSYISQYYNGPSSDSGVPEPAVCMVTTAAIDIHQPNISSDLFSLDMPLKLGGNGTSATSESASRSSVTRAQSDSSQTLGSSMDCSTAREEPSSEPGPSPPPLPSQQQVEEATVQDLLSSLSEDPCPSQKALDPAPLARPSPAGSAQTSPELEHRVSLFNQKNQEGFTVFQIRPVIHFQPTVPMLEDKFRSLESKEQKLHRVPEA", "length": 523 }, "evidence": [ { "id": "F1SJX0", "url": "https://omabrowser.org/oma/group/F1SJX0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BZB3-1", "protein_name": "Transmembrane protein 266", "gene_name": "Tmem266", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALVTSFNMANPQPAIEGGISEVEIISQQVDEETKSIAPVQLVNFAYRDLPLAAVDLSTGGSQLLSNLDEEYQREGSDWLKPCCGKRAAVWQVFLLSASLNSFLVACVILVVILLTLELLIDTKLLQFSNAFQFAGVIHWISLVILSVFFSETVLRIVVLGIWDYIENKIEVFDGAVIILSLAPMVASTVANGPRSPWDAISLIIMFRIWRVKRVIDAYVLPVKLEMEMVTQQYEKAKAIQDEQLERLTQICQEQGFEIRQLRAHLAQQDLDLAAEREAALQAPHVLSQPRSRYKVVEAGTWAEETAAESIVEELRPSQEATVKDDMNSYISQYYNGPSSDSGAPEPAVCVVTTAAIDIHQPNVPSDLFSVDLPLKLSGNSTCASATSETTSHSTCGSVTRAQSASSQTLGSSTDCSTPREELLPSKPRSSPLPLLLPPQQLVAEATVQDLMSSLSKDPCPSHKALDPAPLAQPTPLGSVQTSPELEHRVSLFNQKNQEALPVLQINPVIHLQPTAGLEEKFRSLESKEPKLHTVPEA", "length": 538 }, "evidence": [ { "id": "F1SJX0", "url": "https://omabrowser.org/oma/group/F1SJX0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "monoatomic ion channel activity", "id": "GO:0005216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005216", "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ], "pmid": "" }, { "name": "voltage-gated channel activity", "id": "GO:0022832", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022832", "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ], "pmid": "" }, { "name": "perikaryon", "id": "GO:0043204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043204", "evidence": [ { "database": "UniProtKB", "id": "F1SJX0", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJX0" }, { "id": "PF00520", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ion transport", "eco_id": "ECO_0000259", "start_pos": 102, "end_pos": 217, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 363, "end_pos": 365 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJY4-1", "uniprot_ac": "F1SJY4", "uniprot_id": "F1SJY4_PIG", "mass": { "chemical_mass": 77546.0, "monoisotopic_mass": 77546.0 }, "refseq": {}, "gene_names": [ { "name": "BTBD18", "type": "recommended", "evidence": [ { "id": "F1SJY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ] } ], "protein_names": [ { "name": "BTB/POZ domain-containing protein 18", "type": "recommended", "evidence": [ { "id": "F1SJY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Specifically required during spermatogenesis to promote expression of piRNA precursors. The piRNA metabolic process mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and governs the methylation and subsequent repression of transposons, which is essential for the germline integrity. Acts by facilitating transcription elongation at piRNA loci during pachytene.", "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4#function" }, { "database": "UniProtKB", "id": "ARBA00060219", "url": "https://www.uniprot.org/uniprotkb/ARBA00060219#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BTBD18", "url": "https://www.uniprot.org/uniprotkb/F1SJY4", "locus": { "chromosome": "2", "start_pos": 13227516, "end_pos": 13217759, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013175", "url": "https://www.ensembl.org/id/ENSSSCG00000013175" } ] } } ], "crossref": [ { "id": "F1SJY4", "url": "https://alphafold.ebi.ac.uk/entry/F1SJY4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013175", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013175", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18293", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18293", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47639", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47639", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47639:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47639:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJY4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCSPASPKILYRNPRFLRLAFLQLHHQQQSGVFCDVLLQAEGEAVPAHCCILSACSPFFTERLERERPAQGRKVVLELGGLKIRTLRKLVDFLYTSEMEVSCEEAQDVLSAARQLRVSELESLQLEGGKLVKAPQGRRLNRECLQPPTTAPISARVVASNRRPRTPLPVTQTPCPLGAVRLKSSGKEEGPQEKSNRQNTENLSGTLLLKRKARACPTPQEKSSSPSSHSQGPQNKTGPTLGPTALSPPSLYPSMDERLLPRKIRLSRSKPPPDVCTSKPASLLSGPSSVPTAPGRRLWRQKSVNKEAPEDKQKTGQASPLQSTPSPSGLGKACGSKKRSPEVRAPTLDSAEEGQVGRVKLRKVVNGTCWEVVQEPPLKNSQGSPQIPAPEDLEEPPGTQPSSVNEEEMSSARTDPCEDSPVCSRLRDILLSASCSPDHPVVKSEFGSSPELVGKGPGLDTDCREPYAFDTALLGQPCEAEEYRITSAAATSELEEILDFMLCGSDIEPPIGSMESPRAEGCRTPSYHLTETGKNWIEGQEWCLPDTELWPRELTGLEKEPVGENKGPIEPFSPLVMPSEMSEGEVLSVEGSWTPDLEITRSQPLDGQRDKLLHIDSLDPPPQRCYGDLSPPCSNWVETGLDMSLTMDEVLYPAPEAGKEASGNSELLGPPPASPEEEEIDVVDWTSEGTVPTSIPSVWPDPSSESETEVDILT", "length": 713, "header": "tr|F1SJY4-1|F1SJY4_PIG Isoform 1 of BTB/POZ domain-containing protein 18 OS=Sus scrofa OX=9823 GN=BTBD18 PE=4 SV=3 CANONICAL=F1SJY4-1" }, "isoforms": [ { "isoform_ac": "F1SJY4-1", "url": "https://www.uniprot.org/uniprotkb/F1SJY4/entry#F1SJY4-1", "sequence": { "sequence": "MCSPASPKILYRNPRFLRLAFLQLHHQQQSGVFCDVLLQAEGEAVPAHCCILSACSPFFTERLERERPAQGRKVVLELGGLKIRTLRKLVDFLYTSEMEVSCEEAQDVLSAARQLRVSELESLQLEGGKLVKAPQGRRLNRECLQPPTTAPISARVVASNRRPRTPLPVTQTPCPLGAVRLKSSGKEEGPQEKSNRQNTENLSGTLLLKRKARACPTPQEKSSSPSSHSQGPQNKTGPTLGPTALSPPSLYPSMDERLLPRKIRLSRSKPPPDVCTSKPASLLSGPSSVPTAPGRRLWRQKSVNKEAPEDKQKTGQASPLQSTPSPSGLGKACGSKKRSPEVRAPTLDSAEEGQVGRVKLRKVVNGTCWEVVQEPPLKNSQGSPQIPAPEDLEEPPGTQPSSVNEEEMSSARTDPCEDSPVCSRLRDILLSASCSPDHPVVKSEFGSSPELVGKGPGLDTDCREPYAFDTALLGQPCEAEEYRITSAAATSELEEILDFMLCGSDIEPPIGSMESPRAEGCRTPSYHLTETGKNWIEGQEWCLPDTELWPRELTGLEKEPVGENKGPIEPFSPLVMPSEMSEGEVLSVEGSWTPDLEITRSQPLDGQRDKLLHIDSLDPPPQRCYGDLSPPCSNWVETGLDMSLTMDEVLYPAPEAGKEASGNSELLGPPPASPEEEEIDVVDWTSEGTVPTSIPSVWPDPSSESETEVDILT", "length": 713, "header": "tr|F1SJY4-1|F1SJY4_PIG Isoform 1 of BTB/POZ domain-containing protein 18 OS=Sus scrofa OX=9823 GN=BTBD18 PE=4 SV=3 CANONICAL=F1SJY4-1" }, "locus": { "chromosome": "2", "start_pos": 13227513, "end_pos": 13219977, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014395.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014395.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014005.4", "url": "https://www.ensembl.org/id/ENSSSCP00000014005.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 323, "start_aa": "Thr", "end_pos": 323, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr323", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ], "pmid": "" }, { "name": "male meiosis I", "id": "GO:0007141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007141", "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ], "pmid": "" }, { "name": "positive regulation of transcription elongation by RNA polymerase II", "id": "GO:0032968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032968", "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ], "pmid": "" }, { "name": "transposable element silencing", "id": "GO:0010526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010526", "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ], "pmid": "" }, { "name": "piRNA transcription", "id": "GO:0140541", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140541", "evidence": [ { "database": "UniProtKB", "id": "F1SJY4", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJY4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 713, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJY4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJY4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJY4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY4" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 102, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 323 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 }, { "start_pos": 234, "end_pos": 236 }, { "start_pos": 365, "end_pos": 367 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJY5-1", "uniprot_ac": "F1SJY5", "uniprot_id": "F1SJY5_PIG", "mass": { "chemical_mass": 72086.0, "monoisotopic_mass": 72086.0 }, "refseq": { "ac": "XP_005657688", "name": "CREB3 regulatory factor isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657688" }, "gene_names": [ { "name": "CREBRF", "type": "recommended", "evidence": [ { "id": "F1SJY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ] }, { "name": "CREBRF", "type": "synonym", "evidence": [ { "id": "XP_005657688", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657688" } ] } ], "protein_names": [ { "name": "CREB3 regulatory factor isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005657688", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657688" } ] }, { "name": "CREB3 regulatory factor", "type": "synonym", "evidence": [ { "id": "F1SJY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CREBRF", "url": "https://www.uniprot.org/uniprotkb/F1SJY5", "locus": { "chromosome": "16", "start_pos": 51150560, "end_pos": 51226212, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016986", "url": "https://www.ensembl.org/id/ENSSSCG00000016986" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016986", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016986", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14809", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14809", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523409", "url": "https://www.ncbi.nlm.nih.gov/gene/100523409", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523409", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523409", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MYQKNGP", "url": "https://omabrowser.org/oma/group/MYQKNGP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJY5", "url": "https://www.orthodb.org/?gene=F1SJY5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21552", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21552", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21552:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21552:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-8874211", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8874211", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005657688", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005657688", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJY5-1", "url": "https://www.uniprot.org/uniprotkb/F1SJY5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPSSFPGKKIASRAAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQSRPLLSQVHADAAKENTCYCGAVAKRPEKKGTEPLQGHATPALPFKETQELLLSPLPQEGPGSIAAGESSSLSASTLVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEMTSISSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRDTLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQNPREERGPNMGQKLEILIKDTLGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV", "length": 639, "header": "tr|F1SJY5-1|F1SJY5_PIG Isoform 1 of CREB3 regulatory factor OS=Sus scrofa OX=9823 GN=CREBRF PE=4 SV=3 CANONICAL=F1SJY5-1" }, "isoforms": [ { "isoform_ac": "F1SJY5-1", "url": "https://www.uniprot.org/uniprotkb/F1SJY5/entry#F1SJY5-1", "sequence": { "sequence": "MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPSSFPGKKIASRAAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQSRPLLSQVHADAAKENTCYCGAVAKRPEKKGTEPLQGHATPALPFKETQELLLSPLPQEGPGSIAAGESSSLSASTLVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEMTSISSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRDTLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQNPREERGPNMGQKLEILIKDTLGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV", "length": 639, "header": "tr|F1SJY5-1|F1SJY5_PIG Isoform 1 of CREB3 regulatory factor OS=Sus scrofa OX=9823 GN=CREBRF PE=4 SV=3 CANONICAL=F1SJY5-1" }, "locus": { "chromosome": "16", "start_pos": 51183127, "end_pos": 51151543, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049310.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049310.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046281.1", "url": "https://www.ensembl.org/id/ENSSSCP00000046281.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523409", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523409", "resource": "KEGG Pathway" }, { "id": "R-SSC-8874211", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8874211", "resource": "Reactome", "description": "CREB3 factors activate genes" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4IJW4-1", "protein_name": "CREB3 regulatory factor", "gene_name": "crebrf", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFKTKLPPEIDDKIGRLRQRRCQKSFRQGTEDLCSAMPQPSISGMDPPFGDAFQNCSFADQALTSTDLLANSSDPDFMYELDRDMTCRQSPRGDIFTVGDCKDLDTMDHLPELVDSDPACNSNFEQWDTYWEDLTKYTRLTSCDIWGTKEVDFLGLDDFSSPYQDEEVISRTPTLAQLNSEDSQPVCDTLYHPDLLVGQKQLLFPTPTMAKKTNRFSNPSTGASSSRNPLPDFAEGSQKATWPVPSSTDTMAKAQIHGPSKTSTELLENTDYVRKAKVCFSVPRKPLVESSAQPVSISSSTPIQESTASLVSEDPAVITAANTASSISCEKRVAIPKREVTSGPAPEVGTLRAVPHKLHFPSATGSETLLTMSALGSDASAADKKKEEEHNYSLFLTRARLAGKVTADIEEEEEEEEEEVDDEEEEEEEEEEKAEELDLDDEDHDEGFGSEHELSENDEEEEEEDDEDYEGDKDDYASDAFSEPGCDTDMVDDVKGLTAGISRKRGKRRYFWEYSEQIIPFKQERMLKPSEWDRDTLPSNMYQKNGLHHGKYTLKKSRRTDVEDLTPNPRKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLGTEYDRLLFVINAIKEEIVNKVQDISQDKTTSMTEKLDKLIEDTLVEPPVASQTSDFVNQILENTGKGDPTGGLVGLRVPTSKV", "length": 717 }, "evidence": [ { "id": "F1SJY5", "url": "https://omabrowser.org/oma/group/F1SJY5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8C2LME0-1", "protein_name": "CREB3 regulatory factor isoform X1", "gene_name": "Crebrf", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEDALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPPSFPSKKITSRAAAPVCSSKALQAEVPLSDCVQKASKPTSSTQIMVKTHMYHNEKVNFHVECKDYVKKAKVKISPVQQGRPLLCQAHTDAAKESTCYCGAVAKRQEKRGMEPHQGYGTPALPFKETQELLLSPLLQGGPGSIATAESGSLSASTSVSDSSQKKEEHNYSLFVSDNMREQPTKCSLEDDEDDEDDIDDEDHDEGFGSEHELSENEEEEEEEEDYEDDRDDDISDTFSEPGYENDSVEDLKEMTSISSRKRGKRRYFWEYSEQLTPSQQERILRPSEWNRDTLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQDIVNRVQNPREERGPSMGQKLEILIKDTLGLPVAGQTSEFVNQVLGKTAEGNPTGGLVGLRIPASKV", "length": 639 }, "evidence": [ { "id": "F1SJY5", "url": "https://omabrowser.org/oma/group/F1SJY5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAF6DLQ0-1", "protein_name": "CREB3 regulatory factor", "gene_name": "CREBRF", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEGTLTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLASSFPGKKITSRAAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQSRPLLSQVHADAAKENTCYCGAVAKRPEKKGTEPLQGHATPALPFKETQELLLSPLPQEGPGSVAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEMTSVTSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRETLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQSPREERGPNMGQKLEILIKDTLGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV", "length": 639 }, "evidence": [ { "id": "F1SJY5", "url": "https://omabrowser.org/oma/group/F1SJY5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A811-1", "protein_name": "CREB3 regulatory factor", "gene_name": "Crebrf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLETFTDVLDNEDALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPPSSFPSKKITSRAAAPVCSSKILQAEVPSSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQGRPLLSQVHIDAAKENTCYCGAVVKRQEKRGVEPHQGHGTPALPFRETQELLLSPLPQHGPGLVATAESGSLSASTSVSDSSQKKEEHNYSLFVSDNMREQPTKYSPEDDEDDEDDIDDEDHDEGFGSEHELSENEEEEEEEEDYEDDRDDDISDTFSEPGYENDSVEDLKEMTSISSRKRGKRRYFWEYSEQLTPSQQERILRPSEWNRDTLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQDIVNRVQNPREERGPSMGQKLEILIKDTLGKENIVRHQLMIYSARVKEEFFPPPFLPHLLPPLGRDLSSLVYSHLTYLTFHP", "length": 655 }, "evidence": [ { "id": "F1SJY5", "url": "https://omabrowser.org/oma/group/F1SJY5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CDG5-1", "protein_name": "CREB3 regulatory factor", "gene_name": "Crebrf", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLETFTDVLDNEDALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPPSSFPSKKITNRAAAPVCSSKTLQAEVPSSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQGRPLLSQVHIDAAKENTCYCGAVAKRQERRGVEPHQGRGTPALPFKETQELLLSPLTQDSPGLVATAESGSLSASTSVSDSSQKKEEHNYSLFVSDNMREQPTKYSPEDDEDDEDEFDDEDHDEGFGSEHELSENEEEEEEEEDYEDDRDDDISDTFSEPGYENDSVEDLKEMTSISSRKRGKRRYFWEYSEQLTPSQQERILRPSEWNRDTLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQDIVNRVQNPREEREPSMGQKLEILIKDTLGLPVAGQTSEFVNQVLGKTAEGNPTGGLVGLRIPASKV", "length": 640 }, "evidence": [ { "id": "F1SJY5", "url": "https://omabrowser.org/oma/group/F1SJY5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IUR6-1", "protein_name": "CREB3 regulatory factor", "gene_name": "CREBRF", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPQPSVSGMDPPFGDAFRSHTFSEQTLMSTDLLANSSDPDFMYELDREMNYQQNPRDNFLSLEDCKDIENLESFTDVLDNEGALTSNWEQWDTYCEDLTKYTKLTSCDIWGTKEVDYLGLDDFSSPYQDEEVISKTPTLAQLNSEDSQSVSDSLYYPDSLFSVKQNPLPSSFPGKKITSRAAAPVCSSKTLQAEVPLSDCVQKASKPTSSTQIMVKTNMYHNEKVNFHVECKDYVKKAKVKINPVQQSRPLLSQIHTDAAKENTCYCGAVAKRQEKKGMEPLQGHATPALPFKETQELLLSPLPQEGPGSLAAGESSSLSASTSVSDSSQKKEEHNYSLFVSDNLGEQPTKCSPEEDEEDEEDVDDEDHDEGFGSEHELSENEEEEEEEEDYEDDKDDDISDTFSEPGYENDSVEDLKEVTSISSRKRGKRRYFWEYSEQLTPSQQERMLRPSEWNRDTLPSNMYQKNGLHHGKYAVKKSRRTDVEDLTPNPKKLLQIGNELRKLNKVISDLTPVSELPLTARPRSRKEKNKLASRACRLKKKAQYEANKVKLWGLNTEYDNLLFVINSIKQEIVNRVQNPRDERGPNMGQKLEILIKDTLGLPVAGQTSEFVNQVLEKTAEGNPTGGLVGLRIPTSKV", "length": 639 }, "evidence": [ { "id": "F1SJY5", "url": "https://omabrowser.org/oma/group/F1SJY5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ], "pmid": "" }, { "name": "response to unfolded protein", "id": "GO:0006986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006986", "evidence": [ { "database": "UniProtKB", "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SJY5", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 336, "end_pos": 338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 411, "end_pos": 413, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJY5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY5" }, { "id": "PS00036", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00036" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BZIP", "eco_id": "ECO_0000259", "start_pos": 527, "end_pos": 541, "start_aa": "Arg", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 336, "end_pos": 338 }, { "start_pos": 35, "end_pos": 37 }, { "start_pos": 411, "end_pos": 413 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJY8-1", "uniprot_ac": "F1SJY8", "uniprot_id": "F1SJY8_PIG", "mass": { "chemical_mass": 34701.0, "monoisotopic_mass": 34701.0 }, "refseq": { "ac": "XP_020938670", "name": "olfactory receptor 1052-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938670" }, "gene_names": [ { "name": "LOC100514032", "type": "recommended", "evidence": [ { "id": "F1SJY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" } ] }, { "name": "LOC100514032", "type": "synonym", "evidence": [ { "id": "XP_020938670", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938670" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY8/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 1052-like", "type": "synonym", "evidence": [ { "id": "XP_020938670", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938670" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100514032", "url": "https://www.uniprot.org/uniprotkb/F1SJY8", "locus": {} } ], "crossref": [ { "id": "F1SJY8", "url": "https://alphafold.ebi.ac.uk/entry/F1SJY8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013173", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013173", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15230", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15230", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514032", "url": "https://www.ncbi.nlm.nih.gov/gene/100514032", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514032", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514032", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CVVQLTF", "url": "https://omabrowser.org/oma/group/CVVQLTF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SJY8", "url": "https://www.orthodb.org/?gene=F1SJY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020938670", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020938670", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJY8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPGDPARASGNDTPVTQFILLGFSKYPDLQELFFGGFLLIYAVTVVGNLGMMALIFTDSRLHSPMYFFLSVLSFLDICYSSVVTPKLLADLLVSDKSISFAGCVVQMTFFVMHATAESFLLASMACDRYMAICRPLHYGSIMTKETCLQLVAASYAFGGANSAIQTGNVFSLPFCGPNQVAHFFCDIQPLLRLACANTAVAGVVLYIFSALVTFLPAALILTSYSSVLAAIGRMRSAAGREKALSTCASHFLAIALFYSTVIFTYVQPHGSTNDASGQVVSVFYTIITPMLNPFIYSLRNKEVKDALQRKLRIKLFPC", "length": 319, "header": "tr|F1SJY8-1|F1SJY8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100514032 PE=3 SV=2 CANONICAL=F1SJY8-1" }, "isoforms": [ { "isoform_ac": "F1SJY8-1", "url": "https://www.uniprot.org/uniprotkb/F1SJY8/entry#F1SJY8-1", "sequence": { "sequence": "MAPGDPARASGNDTPVTQFILLGFSKYPDLQELFFGGFLLIYAVTVVGNLGMMALIFTDSRLHSPMYFFLSVLSFLDICYSSVVTPKLLADLLVSDKSISFAGCVVQMTFFVMHATAESFLLASMACDRYMAICRPLHYGSIMTKETCLQLVAASYAFGGANSAIQTGNVFSLPFCGPNQVAHFFCDIQPLLRLACANTAVAGVVLYIFSALVTFLPAALILTSYSSVLAAIGRMRSAAGREKALSTCASHFLAIALFYSTVIFTYVQPHGSTNDASGQVVSVFYTIITPMLNPFIYSLRNKEVKDALQRKLRIKLFPC", "length": 319, "header": "tr|F1SJY8-1|F1SJY8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100514032 PE=3 SV=2 CANONICAL=F1SJY8-1" }, "locus": { "chromosome": "2", "start_pos": 13127456, "end_pos": 13126500, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100684.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100684.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078899.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078899.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514032", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514032", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" } ], "pmid": "" }, { "name": "sensory perception of smell", "id": "GO:0007608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007608", "evidence": [ { "database": "UniProtKB", "id": "F1SJY8", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJY8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 319, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJY8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJY8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJY8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 297, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SJZ0-1", "uniprot_ac": "F1SJZ0", "uniprot_id": "F1SJZ0_PIG", "mass": { "chemical_mass": 34611.0, "monoisotopic_mass": 34611.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100513843", "type": "recommended", "evidence": [ { "id": "F1SJZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SJZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100513843", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0", "locus": {} } ], "crossref": [ { "id": "F1SJZ0", "url": "https://alphafold.ebi.ac.uk/entry/F1SJZ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15230", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15230", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QHLCVQL", "url": "https://omabrowser.org/oma/group/QHLCVQL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SJZ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCPTVENCTRVTWFLLLGLTEQAELKGILFGFFLFIYSVTLTSNLAMITLIHADLQLHTPMYFFLSVLSFIDCSFSTVNTPRLLESFLTSSQSISFAGCVVQMALMTLHGTAECLLLAIMAYDRFAAICHPLLYHTIMSQRLCVQLVAATYMASVASSALLTGYIFKLPYCGPNIINHYFCDIFPVLQLACADTAEVEAMVFSSSSLIFLSTVTVILVSYAYVLVTVSRMRSPEAQSKALSTCASHLTAICLFYGTVTFTYAQPSMRGSTEENKVVSVFYTVVIPMLNPLIYSLRNKDVKAALKRRGFGMLPS", "length": 313, "header": "tr|F1SJZ0-1|F1SJZ0_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100513843 PE=3 SV=2 CANONICAL=F1SJZ0-1" }, "isoforms": [ { "isoform_ac": "F1SJZ0-1", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0/entry#F1SJZ0-1", "sequence": { "sequence": "MCPTVENCTRVTWFLLLGLTEQAELKGILFGFFLFIYSVTLTSNLAMITLIHADLQLHTPMYFFLSVLSFIDCSFSTVNTPRLLESFLTSSQSISFAGCVVQMALMTLHGTAECLLLAIMAYDRFAAICHPLLYHTIMSQRLCVQLVAATYMASVASSALLTGYIFKLPYCGPNIINHYFCDIFPVLQLACADTAEVEAMVFSSSSLIFLSTVTVILVSYAYVLVTVSRMRSPEAQSKALSTCASHLTAICLFYGTVTFTYAQPSMRGSTEENKVVSVFYTVVIPMLNPLIYSLRNKDVKAALKRRGFGMLPS", "length": 313, "header": "tr|F1SJZ0-1|F1SJZ0_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100513843 PE=3 SV=2 CANONICAL=F1SJZ0-1" }, "locus": { "chromosome": "2", "start_pos": 13092148, "end_pos": 13091210, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014392.3", "url": "https://www.ensembl.org/id/ENSSSCT00000014392.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014002.2", "url": "https://www.ensembl.org/id/ENSSSCP00000014002.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" } ], "pmid": "" }, { "name": "sensory perception of smell", "id": "GO:0007608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007608", "evidence": [ { "database": "UniProtKB", "id": "F1SJZ0", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SJZ0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SJZ0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SJZ0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SJZ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SJZ0" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 292, "start_aa": "Ser", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK04-1", "uniprot_ac": "F1SK04", "uniprot_id": "F1SK04_PIG", "mass": { "chemical_mass": 39287.0, "monoisotopic_mass": 39287.0 }, "refseq": { "ac": "XP_001926067", "name": "mesoderm posterior protein 2 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926067" }, "gene_names": [ { "name": "MESP2", "type": "recommended", "evidence": [ { "id": "F1SK04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ] }, { "name": "MESP2", "type": "synonym", "evidence": [ { "id": "XP_001926067", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926067" } ] } ], "protein_names": [ { "name": "Mesoderm posterior bHLH transcription factor 2", "type": "synonym", "evidence": [ { "id": "F1SK04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK04/entry#names_and_taxonomy" } ] }, { "name": "mesoderm posterior protein 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_001926067", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926067" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MESP2", "url": "https://www.uniprot.org/uniprotkb/F1SK04", "locus": { "chromosome": "7", "start_pos": 55345879, "end_pos": 55342935, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001848", "url": "https://www.ensembl.org/id/ENSSSCG00000001848" } ] } } ], "crossref": [ { "id": "F1SK04", "url": "https://alphafold.ebi.ac.uk/entry/F1SK04", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001848", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001848", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18938", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18938", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153433", "url": "https://www.ncbi.nlm.nih.gov/gene/100153433", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153433", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153433", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GWAGHSD", "url": "https://omabrowser.org/oma/group/GWAGHSD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SK04", "url": "https://www.orthodb.org/?gene=F1SK04", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20937", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20937", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20937:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20937:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001926067", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001926067", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK04-1", "url": "https://www.uniprot.org/uniprotkb/F1SK04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQSPPVQSLLGRDHWIFPQGWGWASHSNSTSPASSSDSSGSWPCDRAPGPLQAVPSARSAVEAAPTAPGRARTRPAGGQRQSASEREKLRMRTLARALHQLRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRERRRRGDVVLPRGCPRCPDGGSAQAQTQMQMQAGGLGGGSAVGTPTSWGSPPACSGALTEPERLGSRVPDMGPWVTPPYCPGLQSSSQLSQGRAPNAALWMPSQACSGTQTPPAPGNQPIPWTSPPASLELAAAYQGISVSPESYLSPETPPLLPGPPCQRFQPQAQWECWSHSAEGLPSLEDQAPDPAFQLSDQSRPQSSGLQLSGCPELWQEDLGGAHLGIFY", "length": 371, "header": "tr|F1SK04-1|F1SK04_PIG Isoform 1 of Mesoderm posterior bHLH transcription factor 2 OS=Sus scrofa OX=9823 GN=MESP2 PE=4 SV=1 CANONICAL=F1SK04-1" }, "isoforms": [ { "isoform_ac": "F1SK04-1", "url": "https://www.uniprot.org/uniprotkb/F1SK04/entry#F1SK04-1", "sequence": { "sequence": "MAQSPPVQSLLGRDHWIFPQGWGWASHSNSTSPASSSDSSGSWPCDRAPGPLQAVPSARSAVEAAPTAPGRARTRPAGGQRQSASEREKLRMRTLARALHQLRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRERRRRGDVVLPRGCPRCPDGGSAQAQTQMQMQAGGLGGGSAVGTPTSWGSPPACSGALTEPERLGSRVPDMGPWVTPPYCPGLQSSSQLSQGRAPNAALWMPSQACSGTQTPPAPGNQPIPWTSPPASLELAAAYQGISVSPESYLSPETPPLLPGPPCQRFQPQAQWECWSHSAEGLPSLEDQAPDPAFQLSDQSRPQSSGLQLSGCPELWQEDLGGAHLGIFY", "length": 371, "header": "tr|F1SK04-1|F1SK04_PIG Isoform 1 of Mesoderm posterior bHLH transcription factor 2 OS=Sus scrofa OX=9823 GN=MESP2 PE=4 SV=1 CANONICAL=F1SK04-1" }, "locus": { "chromosome": "7", "start_pos": 55345215, "end_pos": 55343134, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002071.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002071.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002022.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002022.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 67, "start_aa": "Thr", "end_pos": 67, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr67", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153433", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153433", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LY71-1", "protein_name": "Mesoderm posterior bHLH transcription factor 2", "gene_name": "Mesp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQSPQPQSLQGLDHWVFSQGWGWARHSDSTSPASSSDSSGSCPCYATRPPSQSTGPARSARNTQVAPNAPRRARPAPAGGQRQSASEREKLRMRTLARALQELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSALLGLSEDSLRRRRRRSADAAFSHRCPQCPDDSSPSQAQMLGPSLGSDISSGLSWGCPPACPGPIISPENLGSRISNVDPWVTPPYCSQIQSPLHQSLERAADTSHWAPPHACPGMQISPEPRNKTGHWTASTEPAELTKVYQVRGYPMKGQMEVALLPPEGKEMRPWEVIAATIIATTAMQQSPQFGEEKRPGWKSLSVSPEPCLALGSPPLLPRPSCQRLQPQPQWGCWDHSAEALSSSEDQGSSPALQLPVTSPTPSSGLQFSGCPELWQEDLEGPPLNIFY", "length": 421 }, "evidence": [ { "id": "F1SK04", "url": "https://omabrowser.org/oma/group/F1SK04/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0VG99-1", "protein_name": "Mesoderm posterior protein 2", "gene_name": "MESP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCSSRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGVHDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGAAFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY", "length": 397 }, "evidence": [ { "id": "F1SK04", "url": "https://omabrowser.org/oma/group/F1SK04/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" }, { "name": "Notch signaling pathway", "id": "GO:0007219", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007219", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" }, { "name": "heart morphogenesis", "id": "GO:0003007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003007", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" }, { "name": "mesoderm formation", "id": "GO:0001707", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001707", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" }, { "name": "somite rostral/caudal axis specification", "id": "GO:0032525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032525", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SK04", "url": "https://www.uniprot.org/uniprotkb/F1SK04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SK04-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 371, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SK04-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SK04" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK04" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 79, "end_pos": 133, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 67 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 29, "end_pos": 31 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK10-1", "uniprot_ac": "F1SK10", "uniprot_id": "F1SK10_PIG", "mass": { "chemical_mass": 83608.0, "monoisotopic_mass": 83608.0 }, "refseq": { "ac": "XP_003134083", "name": "zinc finger protein 366 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134083" }, "gene_names": [ { "name": "ZNF366", "type": "recommended", "evidence": [ { "id": "F1SK10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ] }, { "name": "ZNF366", "type": "synonym", "evidence": [ { "id": "XP_003134083", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134083" } ] } ], "protein_names": [ { "name": "Zinc finger protein 366", "type": "recommended", "evidence": [ { "id": "F1SK10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK10/entry#names_and_taxonomy" } ] }, { "name": "Dendritic cell-specific transcript protein", "type": "synonym", "evidence": [ { "id": "F1SK10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK10/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 366 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003134083", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134083" } ] } ], "function": [ { "annotation": "Has transcriptional repression activity. Acts as a corepressor of ESR1; the function seems to involve CTBP1 and histone deacetylases.", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10#function" }, { "database": "UniProtKB", "id": "ARBA00058623", "url": "https://www.uniprot.org/uniprotkb/ARBA00058623#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF366", "url": "https://www.uniprot.org/uniprotkb/F1SK10", "locus": { "chromosome": "16", "start_pos": 48708610, "end_pos": 48780941, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016976", "url": "https://www.ensembl.org/id/ENSSSCG00000016976" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016976", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016976", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519576", "url": "https://www.ncbi.nlm.nih.gov/gene/100519576", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519576", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519576", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FKHRNKS", "url": "https://omabrowser.org/oma/group/FKHRNKS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SK10", "url": "https://www.orthodb.org/?gene=F1SK10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404:SF114", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404:SF114", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134083", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134083", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK10-1", "url": "https://www.uniprot.org/uniprotkb/F1SK10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQKEMKMVKDEDVHFSLGVKAAPSFPHGLQPVVSRGKAPARHPFPEALRGPFSQFRYEPPPGDLDGFPGVFEGGGSRKRKSMPTKMPYSHPAEEAALALHPEGSKHPGRPDLPLLFPQPPRPKYDSRMIDLCNVGFQFYRSLEHLGSKAVKQEPVKPSALWPPPTPPPFLPTPYPYYPKVPPGLMFPFFVPSASPFPFSRHTFLPKQPPEPPQARKAEPRESEETKQKVERVDVNVQIDDSYYVDVGGAQKRWQCPTCEKSYTSKYNLVTHILGHSGIKPHACSRCGKLFKQLSHLHTHMLTHQGTRPHKCQVCHKAFTQTSHLKRHMMQHSEVKPHNCRVCGRGFAYPSELKAHEAKHASGRENICVECGLDFPTLAQLKRHLTTHRGPIQYSCSECDKTFQYPSQLQNHMMKHKDIRPYICSECGMEFVQPHHLKQHSLTHKGVKEHKCGICGREFTLLANMKRHVLIHTNIRAYQCHLCYKSFVQKQTLKAHMIVHSDVKPFKCKLCGKEFNRMHNLMGHMHLHSDSKPFKCLYCPSKFTLKGNLTRHMKVKHGVMERGLQSQGFGRGRLSLAQTAGGLRSLEQEEPFDLSQKRGAKGPASQSDGESARGSSCHEEEDDDHCYEAERDSPGLGPCSPPLCAPQDLSAKPAPGPREEAQAEEDAPQGDRQLQSRDSPGPERGQDRELAGRDECPGFRALQSARRGPSFSDYLYFKHRDESLKELLERKMEKQAVLLGI", "length": 740, "header": "tr|F1SK10-1|F1SK10_PIG Isoform 1 of Zinc finger protein 366 OS=Sus scrofa OX=9823 GN=ZNF366 PE=4 SV=1 CANONICAL=F1SK10-1" }, "isoforms": [ { "isoform_ac": "F1SK10-1", "url": "https://www.uniprot.org/uniprotkb/F1SK10/entry#F1SK10-1", "sequence": { "sequence": "MQKEMKMVKDEDVHFSLGVKAAPSFPHGLQPVVSRGKAPARHPFPEALRGPFSQFRYEPPPGDLDGFPGVFEGGGSRKRKSMPTKMPYSHPAEEAALALHPEGSKHPGRPDLPLLFPQPPRPKYDSRMIDLCNVGFQFYRSLEHLGSKAVKQEPVKPSALWPPPTPPPFLPTPYPYYPKVPPGLMFPFFVPSASPFPFSRHTFLPKQPPEPPQARKAEPRESEETKQKVERVDVNVQIDDSYYVDVGGAQKRWQCPTCEKSYTSKYNLVTHILGHSGIKPHACSRCGKLFKQLSHLHTHMLTHQGTRPHKCQVCHKAFTQTSHLKRHMMQHSEVKPHNCRVCGRGFAYPSELKAHEAKHASGRENICVECGLDFPTLAQLKRHLTTHRGPIQYSCSECDKTFQYPSQLQNHMMKHKDIRPYICSECGMEFVQPHHLKQHSLTHKGVKEHKCGICGREFTLLANMKRHVLIHTNIRAYQCHLCYKSFVQKQTLKAHMIVHSDVKPFKCKLCGKEFNRMHNLMGHMHLHSDSKPFKCLYCPSKFTLKGNLTRHMKVKHGVMERGLQSQGFGRGRLSLAQTAGGLRSLEQEEPFDLSQKRGAKGPASQSDGESARGSSCHEEEDDDHCYEAERDSPGLGPCSPPLCAPQDLSAKPAPGPREEAQAEEDAPQGDRQLQSRDSPGPERGQDRELAGRDECPGFRALQSARRGPSFSDYLYFKHRDESLKELLERKMEKQAVLLGI", "length": 740, "header": "tr|F1SK10-1|F1SK10_PIG Isoform 1 of Zinc finger protein 366 OS=Sus scrofa OX=9823 GN=ZNF366 PE=4 SV=1 CANONICAL=F1SK10-1" }, "locus": { "chromosome": "16", "start_pos": 48729381, "end_pos": 48710907, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040602.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040602.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057675.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057675.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 165, "start_aa": "Thr", "end_pos": 165, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr165", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519576", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519576", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y792-1", "protein_name": "Zinc finger protein 366", "gene_name": "ZNF366", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLTVKAIKGIKKEVNMMKNEDANCSVDNTQASPFSHCLQPLSPVTKAHRTTHFGEEFRQHLSHFRYGPPPLGDMESFQGSLEGGSRKRKSMPTKMPPSIALEGSSSPPHRPEDHNDIDSSSLPMAFQQPAQPKYSSQMIDLCNFGFQFYRSLEPFGAKSIKQEPVKPNLAWPSSPAFVQAPYPYYPKVHPGLMFPFIMPPNLHFRNPFQMKRPPEPPFRRAEVRESGENKQKVERVDVNLQIDDSYYVDVGGEQKRWQCPMCEKSYTSKYNLVTHILGHSGIKPHACNRCGKLFKQLSHLHTHMLTHQGTRPHKCQVCHKSFTQTSHLKRHMMQHSDIKPYNCRICGRGFAYPSELKAHESKHESGRENICVECGLDFPTLAQLKRHLTTHRGPIQYNCTECDKTFQYPSQLQNHMMKHKDIRPYICTECGMEFVQPHHLKQHSLTHKGVKEHKCGICGREFTLLANMKRHVLIHTNIRAYQCHLCFKSFVQKQTLKAHMIVHSDVKPFKCKLCGKEFNRMHNLMGHMHLHSDSKPFKCLYCPSKFTLKGNLTRHMKVKHGVMERGFHSQGFGRGRIALSQTNVLRSLEQEEPFDLSQKSQGKGISFHSDGESAKGSSCQEEEEDNCYEAEQYSPGVYHHDSNKLYVPQDLSGKPQCMMKGFRESYCSEKEEILSEEGLEKRVGDSNNQESPGERDLANDKEHLSFRAFEKASLGHSLSDYLYFKHRSKSLKELLERKMEKQTMLIGI", "length": 748 }, "evidence": [ { "id": "F1SK10", "url": "https://omabrowser.org/oma/group/F1SK10/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A715-1", "protein_name": "Zinc finger protein 366", "gene_name": "Zfp366", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQKVMKMVKDEDGPLNAAAKSIPSFPHCLQPEASRGKAPQRHPFPEALRGPFSQFRYEPSPGDLDGFPEVFEGGGSRKRKSMPTKVPYNHSAEEATIAQESKSLGPPNLALLFPQPQHPKCDSQMIDLCNVGLQFYRTLEHLGGKPVKQEPVKPSAMWPQPTPPAFLPAPYPYYPKVHPGLMFPFFMPSSSPFPFSRHTFLPKQPPEPVLPRKVEPLESEETKQKVERVDVNVQIDDSYYVDVGGAQKRWQCPTCDKSYTSKYNLVTHILGHSGIKPHACSRCGKLFKQLSHLHTHMLTHQGTRPHKCQVCHKAFTQTSHLKRHMMQHSEVKPHNCRVCSRGFAYPSELKAHEAKHASGRENICVECGLDFPTLAQLKRHLTTHRGPIQYNCSECDKTFQYPSQLQNHMMKHKDIRPYICSECGMEFVQPHHLKQHSLTHKGVKEHKCGICGREFTLLANMKRHVLIHTNIRAYQCHLCYKSFVQKQTLKAHMIVHSDVKPFKCKLCGKEFNRMHNLMGHLHLHSDSKPFKCLYCPSKFTLKGNLTRHMKVKHGVMERGLHSQGLGRGRLVLAQSTGALRNLEQEEPFDLSQKRSAKGPMFQSDMDSTQGCLYPEEEEEEEEEADEEDKCYDVEPYSPTLALESQQLCAPEDLSTKQEQAPKGPGEGCQDQDTPEEPQEDSSEDHESRDIDCEVRDERLSSRLLQSGGQGPSFSDYLYFKHRDEGLKELLERKMEKQAVLLGI", "length": 743 }, "evidence": [ { "id": "F1SK10", "url": "https://omabrowser.org/oma/group/F1SK10/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BCS0-1", "protein_name": "Zinc finger protein 366", "gene_name": "ZNF366", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQKELKMVKDEDVHFSLGVKRAPSFPHGLQPVVSRGKAPPGHPFPEALRGPFSQFRYEPPPGELDGYPGVFEGGGSRKRKSMPTKMPYNHPAEEGALGLHPEESKNPGVPDLPLLFPPPPPPRPKYDSRMIDLCNVGFQFYRSLEHLGGKAVKQEPVKPSAVWPAPAAPPFLPAPYPYYPKVAPGLVFPFFVPSASPFPFSRHTFLPKRPPEPPLPRKAEPPESEETKQKVERVDVNVQIDDSYYVDVGGAQKRWQCPTCEKSYTSKYNLVTHILGHSGIKPHACSRCGKLFKQLSHLHTHMLTHQGTRPHKCQVCHKAFTQTSHLKRHMMQHSEVKPHNCRVCGRGFAYPSELKAHEAKHASGRENICVECGLDFPTLAQLKRHLTTHRGPIQYNCSECDKTFQYPSQLQNHMMKHKDIRPYICSECGMEFVQPHHLKQHSLTHKGVKEHKCGICGREFTLLANMKRHVLIHTNIRAYQCHLCYKSFVQKQTLKAHMIVHSDVKPFKCKLCGKEFNRMHNLMGHMHLHSDSKPFKCLYCPSKFTLKGNLTRHMKVKHGVMERGLHSQGFGRGRIALAPTAGALRSLEQEEPFDLSQKRRAKGPAFQSDGESARGSSCHEEEDEDNCYEVEPDSPGLGPRGPPLCAPRDLSAKPEPGPGEEAPAEEASPPGARPLKSRDSLGPEGGPEREFARRDERPGLRVLPSTRRGPAFSDYLYFKHRDESLKELLERKMEKQAVLLGI", "length": 742 }, "evidence": [ { "id": "F1SK10", "url": "https://omabrowser.org/oma/group/F1SK10/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6NS86-1", "protein_name": "Zinc finger protein 366", "gene_name": "Znf366", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQKAMKMVKDEDGPLNAAAKSIPSFPHCLQPEASRGKAPQRHPFPEALRGPFSQFRYEPSPGDLDGFPEVFEGGGSRKRKSMPTKVPYTHPAEEASIAQESKSLGPPNLTLLFPQPQRPKCDSQMIDLCNVGLQFYRTLEHLGGKPVKQEPVKPSAMWPQPTPPAFLPAPYPYYPKVHPGLMFPFFVPSSSPFPFSRHTFLPKQPPEPVLPRKVEPLESEETKQKVERVDVNVQIDDSYYVDVGGAQKRWQCPTCEKSYTSKYNLVTHILGHSGIKPHACSRCGKLFKQLSHLHTHMLTHQGTRPHKCQVCHKAFTQTSHLKRHMMQHSEVKPHNCRVCSRGFAYPSELKAHEAKHASGRENICVECGLDFPTLAQLKRHLTTHRGPIQYNCSECDKTFQYPSQLQNHMMKHKDIRPYICSECGMEFVQPHHLKQHSLTHKGVKEHKCGICGREFTLLANMKRHVLIHTNIRAYQCHLCYKSFVQKQTLKAHMIVHSDVKPFKCKLCGKEFNRMHNLMGHLHLHSDSKPFKCLYCPSKFTLKGNLTRHMKVKHGVMERGLHSQGLGRGRLVLVQSAGVLRNLEQEEPFDLSQKRSANGPMFQSDVDSTQDCLCQEEEEEAGEEDNCYEVEPYSPSLAPESQQLCAPEDLSTKQEQTLQDPGEGCRDQDAPEEQQEDRSEDHEGSDIDCEGKDIDCAIREERLSSRLLQSGGQGPSFSDYLYFKHRDEGLKELLERKMEKQAVLLGI", "length": 746 }, "evidence": [ { "id": "F1SK10", "url": "https://omabrowser.org/oma/group/F1SK10/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N895-1", "protein_name": "Zinc finger protein 366", "gene_name": "ZNF366", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQKEMKMIKDEDVHFDLAVKKTPSFPHCLQPVASRGKAPQRHPFPEALRGPFSQFRYEPPPGDLDGFPGVFEGAGSRKRKSMPTKMPYNHPAEEVTLALHSEENKNHGLPNLPLLFPQPPRPKYDSQMIDLCNVGFQFYRSLEHFGGKPVKQEPIKPSAVWPQPTPTPFLPTPYPYYPKVHPGLMFPFFVPSSSPFPFSRHTFLPKQPPEPLLPRKAEPQESEETKQKVERVDVNVQIDDSYYVDVGGSQKRWQCPTCEKSYTSKYNLVTHILGHSGIKPHACTHCGKLFKQLSHLHTHMLTHQGTRPHKCQVCHKAFTQTSHLKRHMMQHSEVKPHNCRVCGRGFAYPSELKAHEAKHASGRENICVECGLDFPTLAQLKRHLTTHRGPIQYNCSECDKTFQYPSQLQNHMMKHKDIRPYICSECGMEFVQPHHLKQHSLTHKGVKEHKCGICGREFTLLANMKRHVLIHTNIRAYQCHLCYKSFVQKQTLKAHMIVHSDVKPFKCKLCGKEFNRMHNLMGHMHLHSDSKPFKCLYCPSKFTLKGNLTRHMKVKHGVMERGLHSQGLGRGRIALAQTAGVLRSLEQEEPFDLSQKRRAKVPVFQSDGESAQGSHCHEEEEEDNCYEVEPYSPGLAPQSQQLCTPEDLSTKSEHAPEVLEEACKEEKEDASKGEWEKRSKGDLGAEGGQERDCAGRDECLSLRAFQSTRRGPSFSDYLYFKHRDESLKELLERKMEKQAVLLGI", "length": 744 }, "evidence": [ { "id": "F1SK10", "url": "https://omabrowser.org/oma/group/F1SK10/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" }, { "name": "response to estrogen", "id": "GO:0043627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043627", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" }, { "name": "negative regulation of intracellular estrogen receptor signaling pathway", "id": "GO:0033147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033147", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" }, { "name": "nuclear estrogen receptor binding", "id": "GO:0030331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030331", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SK10", "url": "https://www.uniprot.org/uniprotkb/F1SK10" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 547, "end_pos": 549, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK10" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 253, "end_pos": 280, "start_aa": "Trp", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 165 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 547, "end_pos": 549 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK20-1", "uniprot_ac": "F1SK20", "uniprot_id": "F1SK20_PIG", "mass": { "chemical_mass": 209242.0, "monoisotopic_mass": 209242.0 }, "refseq": { "ac": "XP_020954618", "name": "treslin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954618" }, "gene_names": [ { "name": "TICRR", "type": "recommended", "evidence": [ { "id": "F1SK20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ] }, { "name": "TICRR", "type": "synonym", "evidence": [ { "id": "XP_020954618", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954618" } ] } ], "protein_names": [ { "name": "TOPBP1 interacting checkpoint and replication regulator", "type": "synonym", "evidence": [ { "id": "F1SK20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK20/entry#names_and_taxonomy" } ] }, { "name": "treslin", "type": "synonym", "evidence": [ { "id": "XP_020954618", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954618" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TICRR", "url": "https://www.uniprot.org/uniprotkb/F1SK20", "locus": { "chromosome": "7", "start_pos": 55200640, "end_pos": 55143240, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040355", "url": "https://www.ensembl.org/id/ENSSSCG00000040355" } ] } } ], "crossref": [ { "id": "ENSSSCG00000040355", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040355", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154672", "url": "https://www.ncbi.nlm.nih.gov/gene/100154672", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032746", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032746", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154672", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154672", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LYWMEKL", "url": "https://omabrowser.org/oma/group/LYWMEKL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SK20", "url": "https://www.orthodb.org/?gene=F1SK20", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21556", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21556", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21556:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21556:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15292", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15292", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21854", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21854", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-69273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020954618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954618", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK20-1", "url": "https://www.uniprot.org/uniprotkb/F1SK20-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACCHNVMLLLDTAGGAAGESPVRRAALRLLTYLSCRFGLARVRWAFRFFDSQGARSRPSRVSDFRELGVRSWEDFEEELEARLGDGARGAHLPGPAPRATHTHSALMETLLDYQWDRPEITSPTKPILRSSRRRLLDVEGEAKEAASALGSFVNAVFLLGPCPHSQRELLQFVAGCEAQAQRLPPSPKQVMDKLLPRRVQEVMIARKITLYWVDTTEWSKLWESPDHVGYWTVCELLRHVGGTVLPFETFSQDFTKTGGMPLGSESKLFREPRLSSWISTLPTDSTLNCLLYNSHEYEASFPRMEGTLFLPVEGKETQETWTVMLEPLAMYQRHFQKPVRIFLKGTVTKWSLPTSGPLSTDSWMLQSLEGNRSTQRMLFQQLVNRLAAEELHLVASVDPGEGWPPITGVISPFSASATVLTVFHAKETEFQRHFVQTVLAERPQDSASLLSEVMDGVLNQIHHSLEDPATSAPPVPEWAQQELGRTTPWSSTIVEKWFPCSNLSGASSNLMESFWLLQAASSNKEESSKTESELTRCLSEFYQGKSREESTGYNQEDSRKKRGVPRTPVRQKMNTMCRSLKMLNVARLNVKAQKLHPDGSPDTAGEKGIQKIASGRTTDKLENRGRTLRSSKPKGFKTEEELLSYIHENYQKTMATGEITLYSCARNMISNIKAFLKSRGPKELDMNCLHQVRNNLLKTSKSLRQNVGKLDKEDKVRECQLQVFLRLELCLQCPSIHESIDDMEQVVEEMTDLLRMMYLTEDSAYLAKFLEEILGLYSDSIPETLGKLYNSLGFVIPQKLAGVLPTDFFSDDSMTQESKSPLSVPLMSSAHRSVSGGTESDQLEELRTRSAKKRRKNAIRHKSIAEVSQNLRQIEIPKVSKRATKNENSQPSLQQPPLPVKETVQEVTKVRRNLFNQEMISPSKRSVKRGLPRSHSVSAVEDLDNFKRTKGFHKLLTKSVAETPVHKQISRRLLHRQIKGRSSDPGPDIDVVEESPEKGEDEVSLRRSPRIKQLSFGRTNSGSFYSVSQPKSRSIQRVHSFQQVKSDQRENSPIQSIRSPKRLLFGAVSEMISPSEKGSARIKRPSGNTMDSAMLTAYQTPEKRSWKCPSSKATPRRYPHTPQTPLRTPERLQGSPAEMTPAKQVIFKEFLKEDSSHSWDSPCQSKVTPRKGLSLVEGASPLKTILRTPQRPGSQPSRFLQNSSWPSLVNSSPESTSCSAAVVPSTAQTRGECLTPIRYSPRTPSRAAALRVQGEAAFMGTPPTQKHQLPWGSAASQAEKLARQRKNEAVKTPGRPGDTALTSPKKPLTSSLCAVSKSPFRKLPVDSPPPGEQDWREVQKSASTAPSPCCPPSTPSKIWQRAGPAPRPPPPPSKTGTGPRKASEAQSHFLEGQPHSSAALRAAMTDSPAPITDTRKKQEEAALSPLPSPESHSHHAADFGDDWCASPQLLTAGDSAFLTLLDEAQHRGSENLKSSVDPVEEGEASRTVAADEKPSPPHPGIPPPSPSSEPSSPATPSYDLRCTAGRRQHRAAAQLETLRAASWPSGASPGPQTYEVELEMQASGLPKLRIKKVDPGSLSEAETLRGEESALPGLSIPRPSKSSGKPEATYLSPPCLRPSHSTPGKSRGQTYICQSCTPTRCPSSTPSPFQTDGVVPWTPSPKHSGKTTPDTIKDWPRRKRAVDCSLGPSAGRGEVSGDFPGGMWLLEPEGKEQGLGLSITKTPILGDFELGVCKLPDQSPLRDSVPKAEEAASWGQFGLGSRKRFLSAEGEAEGQAKRVCDEQKGDSEVTRSEETSPGTSARQLPSSGEDDEVFASGATPPPSYAVRSCLSASSLQALTHSPLLFQTKMPSSRGKDAREEDVEVFPSAAEDSPFSRALSRRRPISRTYTRKKLIS", "length": 1896, "header": "tr|F1SK20-1|F1SK20_PIG Isoform 1 of TOPBP1 interacting checkpoint and replication regulator OS=Sus scrofa OX=9823 GN=TICRR PE=4 SV=3 CANONICAL=F1SK20-1" }, "isoforms": [ { "isoform_ac": "F1SK20-1", "url": "https://www.uniprot.org/uniprotkb/F1SK20/entry#F1SK20-1", "sequence": { "sequence": "MACCHNVMLLLDTAGGAAGESPVRRAALRLLTYLSCRFGLARVRWAFRFFDSQGARSRPSRVSDFRELGVRSWEDFEEELEARLGDGARGAHLPGPAPRATHTHSALMETLLDYQWDRPEITSPTKPILRSSRRRLLDVEGEAKEAASALGSFVNAVFLLGPCPHSQRELLQFVAGCEAQAQRLPPSPKQVMDKLLPRRVQEVMIARKITLYWVDTTEWSKLWESPDHVGYWTVCELLRHVGGTVLPFETFSQDFTKTGGMPLGSESKLFREPRLSSWISTLPTDSTLNCLLYNSHEYEASFPRMEGTLFLPVEGKETQETWTVMLEPLAMYQRHFQKPVRIFLKGTVTKWSLPTSGPLSTDSWMLQSLEGNRSTQRMLFQQLVNRLAAEELHLVASVDPGEGWPPITGVISPFSASATVLTVFHAKETEFQRHFVQTVLAERPQDSASLLSEVMDGVLNQIHHSLEDPATSAPPVPEWAQQELGRTTPWSSTIVEKWFPCSNLSGASSNLMESFWLLQAASSNKEESSKTESELTRCLSEFYQGKSREESTGYNQEDSRKKRGVPRTPVRQKMNTMCRSLKMLNVARLNVKAQKLHPDGSPDTAGEKGIQKIASGRTTDKLENRGRTLRSSKPKGFKTEEELLSYIHENYQKTMATGEITLYSCARNMISNIKAFLKSRGPKELDMNCLHQVRNNLLKTSKSLRQNVGKLDKEDKVRECQLQVFLRLELCLQCPSIHESIDDMEQVVEEMTDLLRMMYLTEDSAYLAKFLEEILGLYSDSIPETLGKLYNSLGFVIPQKLAGVLPTDFFSDDSMTQESKSPLSVPLMSSAHRSVSGGTESDQLEELRTRSAKKRRKNAIRHKSIAEVSQNLRQIEIPKVSKRATKNENSQPSLQQPPLPVKETVQEVTKVRRNLFNQEMISPSKRSVKRGLPRSHSVSAVEDLDNFKRTKGFHKLLTKSVAETPVHKQISRRLLHRQIKGRSSDPGPDIDVVEESPEKGEDEVSLRRSPRIKQLSFGRTNSGSFYSVSQPKSRSIQRVHSFQQVKSDQRENSPIQSIRSPKRLLFGAVSEMISPSEKGSARIKRPSGNTMDSAMLTAYQTPEKRSWKCPSSKATPRRYPHTPQTPLRTPERLQGSPAEMTPAKQVIFKEFLKEDSSHSWDSPCQSKVTPRKGLSLVEGASPLKTILRTPQRPGSQPSRFLQNSSWPSLVNSSPESTSCSAAVVPSTAQTRGECLTPIRYSPRTPSRAAALRVQGEAAFMGTPPTQKHQLPWGSAASQAEKLARQRKNEAVKTPGRPGDTALTSPKKPLTSSLCAVSKSPFRKLPVDSPPPGEQDWREVQKSASTAPSPCCPPSTPSKIWQRAGPAPRPPPPPSKTGTGPRKASEAQSHFLEGQPHSSAALRAAMTDSPAPITDTRKKQEEAALSPLPSPESHSHHAADFGDDWCASPQLLTAGDSAFLTLLDEAQHRGSENLKSSVDPVEEGEASRTVAADEKPSPPHPGIPPPSPSSEPSSPATPSYDLRCTAGRRQHRAAAQLETLRAASWPSGASPGPQTYEVELEMQASGLPKLRIKKVDPGSLSEAETLRGEESALPGLSIPRPSKSSGKPEATYLSPPCLRPSHSTPGKSRGQTYICQSCTPTRCPSSTPSPFQTDGVVPWTPSPKHSGKTTPDTIKDWPRRKRAVDCSLGPSAGRGEVSGDFPGGMWLLEPEGKEQGLGLSITKTPILGDFELGVCKLPDQSPLRDSVPKAEEAASWGQFGLGSRKRFLSAEGEAEGQAKRVCDEQKGDSEVTRSEETSPGTSARQLPSSGEDDEVFASGATPPPSYAVRSCLSASSLQALTHSPLLFQTKMPSSRGKDAREEDVEVFPSAAEDSPFSRALSRRRPISRTYTRKKLIS", "length": 1896, "header": "tr|F1SK20-1|F1SK20_PIG Isoform 1 of TOPBP1 interacting checkpoint and replication regulator OS=Sus scrofa OX=9823 GN=TICRR PE=4 SV=3 CANONICAL=F1SK20-1" }, "locus": { "chromosome": "7", "start_pos": 55199555, "end_pos": 55143335, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002064.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002064.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002015.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002015.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1355, "start_aa": "Thr", "end_pos": 1355, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1355", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1516, "start_aa": "Thr", "end_pos": 1516, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1516", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1623, "start_aa": "Thr", "end_pos": 1623, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1623", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1646, "start_aa": "Thr", "end_pos": 1646, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1646", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1820, "start_aa": "Thr", "end_pos": 1820, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1820", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154672", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154672", "resource": "KEGG Pathway" }, { "id": "R-SSC-69273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69273", "resource": "Reactome", "description": "Cyclin A/B1/B2 associated events during G2/M transition" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZIL1-1", "protein_name": "TOPBP1 interacting checkpoint and replication regulator", "gene_name": "TICRR", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MACSPSAVFLLDTASPGRRERLQLCALRLLNHLCCRFGLPRLRWAYRFFDSLGGRGGASRGGGFRPPAPRAWARFEEELAERLGARGSSAVLPGPATRLALTHSGLKETLLDFQWDRPEIASPTKAPRRSRGAGGELPASGAPSEGFVNAVFLFSPCPRSRRELRQFVSGGGAAPAEPPALQEVAEKLLPRSVRELLAEQRITLYWVDTAESSQLIKSPDHDGYWIMLQLLQQIGGTILPSETLYPSHHKADLADVFLRDSGSPVPQTVPWTTLLPSDSALNSLFSKPSVFYSVFPQQEGTLFLSMPEGKKESCAVILEPLAMSQRQLHCPFNIILKGSVMSWNWMQAVSFLTESWILKSSETECTEQNWLHQLLRSLVMKELHMIAEVSQTTSSCPCTAVLSPLSESSAVLTLFCTEKTAEVQRCNLEGAVVETSSPDDALHLPDVVHSVLSEIDMAVEDSLANTEETPVPEWVQRELSSTGGWHPSVLEAWYSSSNACGASSDLMDSFRLLQVPCTNVKDDADQSEVELLESLSELYQRKSSEISAGAGNNKKRRGVPRTPVRQKMKTMSRSLQMLNVARLNVKAQKFQPDGMPAVSEKVPQKLSAKRLDEKLEGKEKALKTSIDLKTEEELQSHLITSYQKVVAEEVLSSACAQNMIMAIKRFLKMQDTKEKEVACVEKVRNHLLKTSKLLRQQHGSEKETKVRECRLQVFLRLELCLQCPSLQNNADEMEQLLEEMTDMLRILCLTEDPGYLTKFLEEILELYMNSIPKTLGDLYYSLGTQIPPKLASVLPSDFFSDDSMTVDSKSPGLPLSLSSVLTPTAVCLQSESDQLEELRTRSAQKRRNNVLARHRSMTEASQNLRQIEIPKIDKNPIRKESSRSYLATEKSQQMPLQKEAVQEVTKVRRNLFNEGIRSPSKRTTKKMPRSQSVSAVEGLRYKCTDEGAKGHHKLLTKRVAETPLHKQVSRRLLHKQIKGRSSDPGCETGVVEESPEKAISEAGLRRSPRIRQLTLNRTHSGVFCSTVQPSSQNSQQVHWGQEEESCTQQDVAGVGLHSGCPTPKRFFFGAVIDACSPTVKRSPGRRRTRKDSLNLEELTACQTPRKTPLKSAQKLLNSASKPLRRSPRILHRTPQKVEKTPSKSPAAKQTAAKCLGKYFSHPAPRIRSPSVLTEGKRACLMQVTKDCSPAEKLFSPYKETDLQLPEHNEILSTVNPSPPQDSAPAAASLPATQKSIFAELQTPRRSLRSLSKFASPVGARRQILPREIEMQPEPASQTTETTPRKAEDPGSKLPTSPLSDVEMSQLTVKLESPFSSPLSEKATNTAAVSSPSHTEAKESDREFNVPENSLLKSPGVGGTLLESPLNNSKQAKGNPDSGGENHTCVCETPSKSKGGHRDNGDNSCVESLQFCKSQIPENNHILENKQMDAVAQNSPPRKDSKNLEKHSSPKLSAGEHMLNAEMECEQSSKEGNSSVSTCESFLSSSQTSIDELEPKTPQREECTGPKAPSLKRRSRSARNTSPPLPKSAPAYSLRYTADRRQREAAARMGNPELPAKFSAPKIPCQQPSESSTAYEVELEMQASGLPKLRFKKIGSCSALDVQSETNVSKPKGGESPFGDLAMTWCSKHPGKLAAACVSPSCFRSFHGTPGKGGGQTYICQSYTPTSCASNTTSPSPLEAEVPLTPPKLKGKTTPDAIKDWPRRKRAVSSTANSSCVQSEKNADEAMSTSREGKLKDLENCSSKVTCAFGEFELEGIYRLQDQVSPNDTEPRDEERSAMGASGLTSRKRVFTYLSPEKEENHEAKRACTDKCNMVLNAFSPEEGNRNKARTDLVLPEKPRACLLLTPRQHICIGDDDVFPLSGATPPVKSSLSASSLLALTQSPLLCKGQTPPSRRKCVQDEESDDPEVITNQELSPFHSMASRRRSLSRTYSRKRLLS", "length": 1938 }, "evidence": [ { "id": "F1SK20", "url": "https://omabrowser.org/oma/group/F1SK20/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0L4N7-1", "protein_name": "TOPBP1-interacting checkpoint and replication regulator", "gene_name": "Ticrr", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACCHKVMLLVDTAGDAARHSSARRAALRLLTYLSCRFGLARVHWTFKFFDSQGARNRPSRVSDFRELGSRSWEDFEEELEARLGDRPPGAHLPGPTPRATHTHGALMETLLDYQWDRPEITSPTKPILRSSGRRLLDADSEAKEAETALGGFGNAVFLLAPCPHSQRELLQFVSGCEAQAQRVPLTPKQLMEKVLPKRVQEVMIARNITLYWVDTTERSKLWASPDHTGYWTVCELLHHGGGTILPAETWNLGFTKARETVLPCGGELSPGPHLSPWISALPIDATVNCLLYNSEYEASFPRVEGTLFLPVKGKEIQETWAICLEPLAMHQRHFQKPVRIFLKGSVTQWSLPMSSALGTDNWMLQSPEEHKSTQRLLFQELVSRLTAEEFHLVASVDPGDGWPPITGIISPFSANAMILTVLRAKEAEFQRHFLQTAVTEGSQDVTSLFSDAVDSVLNQVHNSFEDPASSVSRVPEWVQQELSRTSPWSPALVEKWFPFSNVCGATSDLMESFLLLHAASPDNNESSRTESELTRCLSELYQRRSHEESTVVNQERSRKKRGIPRTPVRQKMNTMSRSLKMLNVARLNVKAQKLHPDGSPDMAVEKGLPKTVIGRTADKLEDRGRVLRSSKLKEFKTEEELLAYIHDNYQKTVATGEITLHSCAQNTVSTIKIFLKSKDVKELEMTCMNHMNSNLLKTSKTLRQNLGGKTDKEDKVRECQLQVFLRLEMCQQCPSVLDRTEEVEHVVEEVTDLLRVVCLTKDSAYLSEFLEEILGLYIDSIPGTIGQLYHSLGLKIPQKLAGVLPTDFFSDDSMTQESMSPPPSSSTHRSVSAITESEQLEELRTRSAKKRRKNALIRHKSIAEISQALRQIEVPKVSKRATRSASNPRTWSTEESAHPASVQLPLPRKDTVQEVTKVRRNLFNQGMLSPSKRGLKKGLPRSRSVSTLECLQHKQDKLKKTKSSTFQGYKLLTKSVAETPVHKQISRRLLHRQIKGRSSDPGPDIHVVEESPEKEDEMILRRSPRIKQLSFSRTNSGSFYSVSQPKSRSVQRIHSSQQKSDQRENFPVQSIRSPKTLLFGALSETPSSSKKGSPGIKRSSRSMLDSEISTAYETPKKNNQKSPSFSKTTPRSFPRTAQTLLYTPERLQNSSTEITSAEGTISEVAIKTPSSHGYNSPSASKVTPQKRASPAKEETSPLTELPSIPRESDVQPPQCSSNSVSSSSEGPCCPASPPPLAGQARGQCLTPVRYSFRTPPRTALAVTSTYQEHQELPLRRASQAREPPQRLEEKALKIPKKPTDTSTSPLSPKEHFTSPGCNVSPHQPSISSLSASPSGELSWKENQTSPSVTTSVSCPVPSTPPRTPQRMICPIPPSPPSKLRRPCRKKSCLPQDFPECQPGPCAVPVLGTTTSPGTVRGSREEQSQPSEGHSYLGTSFGSDWHVSSPMLIASDTECLPLIDEAQLHRLENQEVKSGVLPGEEGEEPETTTAEPPSVSDLGILVPAPSSVSNSPELLSYTLCRVADGRQSHDAAQQESPPASEATDSPQTYDVELEMQASGLPKLRIKKIDPGVLLEPEALGRETLLGEEGTFPALSMPKASKSSGRSEHTYLSPPCLLPSHSTPGKSGGQTFICQSCTPSRCPPSTPSPFQADVGVSWTPSPKQSGKTTPEIIKDWPRRKRAVDCSAGPSAGRGEASMDLPGSLSLLEPEPEGKEQSLEQDLCKVLILEDFELEGVCQLPDQSPPKHSVSMAEETSWEQFGLGRKRLLSAKEESEYNGKRLCDSPSEDPQASEHKECSPCWSAPPVPSVGDDEVFVSGSTPPSGYMVRSCLSASGLQALTQSPLLFQGRTPSSHSKDTRDEDVDVFPSTAEESPFSQTLSRKRPFRTYTRKKLIS", "length": 1894 }, "evidence": [ { "id": "F1SK20", "url": "https://omabrowser.org/oma/group/F1SK20/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BPF2-1", "protein_name": "TOPBP1 interacting checkpoint and replication regulator", "gene_name": "TICRR", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MACCHNVMLLLDTAGGVAGESLVRRAALRLLTYLSCRFGLARVRWAFRFFDSQGARSRPSRVSDFRELGVRSWEDFEEELEARLGDGAQGAHLPGPAPRASHTHSALMETLLDYQWDRPEITSPTKPILRNSGRRLLDVEGEAREAESALGGFVNAVFLLAPCPHSQRELLQFVSGSEAQAQRLPPTPKQVMEKLLPRKVQEVMRTRKITLYWVDTTEWPKLWESPDHLGYWTVCELLYHVGGTVLPFESFSQDFTKAGETLLSGERKLSSKPHLSSWISTLPTDSTLNCLLYNSPEYEASFPRIEGTLFFPVEGKELQETWTVTLEPLAMHQRHFQKPVRIFLKGTVTQWSLPTSGTLGTDSWMLQSPDGDRSTQRMLFQHLVNRLTAEELHLVASVDPGEGWPPITGVISPFSVGATVLTLFCTRETESQRHLLQTVVAESPQDSAALFSEVVDGVLKQIDSSLEVPATSDLPVPEWAQQELGRSAPWTSAIVEKWFPCSNLSGASSSLMESFWLLQATSSAKEEPSKTESDLTRGLSELYQRKSREEYSVSSQEDSRKKRGVPRTPVRKKMNTMCRSLKMLNVARLNVKAQKLHPDGSPDTAGEKGIQKTANGRTADRLENRGRTLRSSKPKDFKTEEELLSHIHENYQKTVAAGDTMLYSCARSTISNIKAFLKSKGTKELEEASLEMNCLYQVRNNFLKTSKSLRQNVGKLDKEGKVRECQLQVFLRLELCLQCPSVHERVEDLEQVVGEVTDLLRMLCLTEDSAYLAKFLEGILELYIDSIPKILGSLYDSLGFVIPQKLAGVLPADFFSDDSMTQESKSPLSVPLPSNAHRSLPGGTESDQLEELRTRSAKKRRKNAIRHKSIAEVSQNLRQIEIPKVAKRATKNENSHPTLQQQPPLPVKDTVQEVTKVRRNLFNQEMISPSKRSVKKGLPRSHSVSAVEGLEYKRDSFKRTKGYRKLLTKSVAETPVHKQISGRLLHRQIKGRSSDPGPDIDVVEESPEKGEDVVSLRRSPRIKQLAFSRTNSASFYSVSQPKSRSIQRVHSFQQMKSDQRENSPVQSIRSPKRLLFGAMSEMISPSEKGSARIKRPSGNTVGSATPTAYQTPEKSYWKSPSSCKATPRKVPRTPQTPLRTPERLQKSPAEMTPAKQVIFKEFLKDLSPHGWDSPSQPKVTPRKGHSLAEGASSLEKVRRTPQRQSGQPPRFLQNSSWPHLVDSSPESTSCPAALVSSTAPTRTECLTPNRSSARAPPRTAASGLQRQAASKGTSPSQKHQLPQGSGAPRAEKLPQLWSNKAVKTPERPGNAALTFPKRAVTSLSCGISKESSLGEFPIASLSSGQGGWQEVQRSPSVTTPPSCSAPLTPPSASQVAPSDLWPPPPPSKHGKRHNKTSETEQDFLEGQPDSLAALRVAITDNPAAITDTGKNQKAATLSSPASPELPAYPGTGFGGDWHTSSPLLIATDSDCLTLLDEAEHHGHDNLKSSISPLDGGEGLRMGTCEKPSPCDPRILPTSPSSGPHSPLMPLYDPHCTADMKQCQAATQLEDQQAAPWPCGAPASPQTYEVELEMQASGLPKLRIKKIDSSSLPEVEPPPREESSLPGPSVPRASKSSGKPEATCLSAPCLRPSHSTPGKSGGQTYICQSCTPTHCPCGTPSPFQTEVGVPWTPSPKHSGKTTPDTIKDWPRRKRAVDCSLGPSAGRSEVSSDLPGGVLPLEPEGKERGLELGIGRPPILGDFELEGVCQLPDQSPPRDSVPKAEEAFSWGQFGLGSRKRCLSAEEAAERQVKRACDQQGDSEERSPSTSIRQLPSAADDEVFVPGATPPPGCAVRSCLSASGLQALTHSPLLFQGKTPSSQRKEARDEDVDVFSPTAEDSPFSRAFSRRRPIGRSYSRKKLLS", "length": 1902 }, "evidence": [ { "id": "F1SK20", "url": "https://omabrowser.org/oma/group/F1SK20/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7Z2Z1-1", "protein_name": "Treslin", "gene_name": "TICRR", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACCHKVMLLLDTAGGAARHSRVRRAALRLLTYLSCRFGLARVHWAFKFFDSQGARSRPSRVSDFRELGSRSWEDFEEELEARLEDRAHLPGPAPRATHTHGALMETLLDYQWDRPEITSPTKPILRSSGRRLLDVESEAKEAEAALGGLVNAVFLLAPCPHSQRELLQFVSGCEAQAQRLPPTPKQVMEKLLPKRVREVMVARKITFYWVDTTEWSKLWESPDHLGYWTVCELLHHGGGTVLPSESFSWDFAQAGEMLLRSGIKLSSEPHLSPWISMLPTDATLNRLLYNSPEYEASFPRMEGMLFLPVEAGKEIQETWTVTLEPLAMHQRHFQKPVRIFLKGSVAQWSLPTSSTLGTDSWMLGSPEESTATQRLLFQQLVSRLTAEELHLVADVDPGEGRPPITGVISPLSASAMILTVCRTKEAEFQRHVLQTAVADSPRDTASLFSDVVDSILNQTHDSLADTASAASPVPEWAQQELGHTTPWSPAVVEKWFPFCNISGASSDLMESFGLLQAASANKEESSKTEGELIHCLAELYQRKSREESTIAHQEDSKKKRGVPRTPVRQKMNTMCRSLKMLNVARLNVKAQKLHPDGSPDVAGEKGIQKIPSGRTVDKLEDRGRTLRSSKPKDFKTEEELLSYIRENYQKTVATGEIMLYACARNMISTVKMFLKSKGTKELEVNCLNQVKSSLLKTSKSLRQNLGKKLDKEDKVRECQLQVFLRLEMCLQCPSINESTDDMEQVVEEVTDLLRMVCLTEDSAYLAEFLEEILRLYIDSIPKTLGNLYNSLGFVIPQKLAGVLPTDFFSDDSMTQENKSPLLSVPFLSSARRSVSGSPESDELQELRTRSAKKRRKNALIRHKSIAEVSQNLRQIEIPKVSKRATKKENSHPAPQQPSQPVKDTVQEVTKVRRNLFNQELLSPSKRSLKRGLPRSHSVSAVDGLEDKLDNFKKNKGYHKLLTKSVAETPVHKQISKRLLHRQIKGRSSDPGPDIGVVEESPEKGDEISLRRSPRIKQLSFSRTHSASFYSVSQPKSRSVQRVHSFQQDKSDQRENSPVQSIRSPKSLLFGAMSEMISPSEKGSARMKKRSRNTLDSEVPAAYQTPKKSHQKSLSFSKTTPRRISHTPQTPLYTPERLQKSPAKMTPTKQAAFKESLKDSSSPGHDSPLDSKITPQKRHTQAGEGTSLETKTPRTPKRQGTQPPGFLPNCTWPHSVNSSPESPSCPAPPTSSTAQPRRECLTPIRDPLRTPPRAAAFMGTPQNQTHQQPHVLRAARAEEPAQKLKDKAIKTPKRPGNSTVTSSPPVTPKKLFTSPLCDVSKKSPFRKSKIECPSPGELDQKEPQMSPSVAASLSCPVPSTPPELSQRATLDTVPPPPPSKVGKRCRKTSDPRRSIVECQPDASATPGVGTADSPAAPTDSRDDQKGLSLSPQSPPERRGYPGPGLRSDWHASSPLLITSDTEHVTLLSEAEHHGIGDLKSNVLSVEEGEGLRTADAEKSSLSHPGIPPSPPSCGPGSPLMPSRDVHCTTDGRQCQASAQLDNLPASAWHSTDSASPQTYEVELEMQASGLPKLRIKKIDPSSSLEAEPLSKEESSLGEESFLPALSMPRASRSLSKPEPTYVSPPCPRLSHSTPGKSRGQTYICQACTPTHGPSSTPSPFQTDGVPWTPSPKHSGKTTPDIIKDWPRRKRAVGCGAGSSSGRGEVGADLPGSLSLLESEGKDHGLELSIHRTPILEDFELEGVCQLPDQSPPRNSMPKAEEASSWGQFGLSSRKRVLLAKEEADRGAKRICDLREDSEVSKSKEGSPSWSAWQLPSTGDEEVFVSGSTPPPSCAVRSCLSASALQALTQSPLLFQGKTPSSQSKDPRDEDVDVLPSTVEDSPFSRAFSRRRPISRTYTRKKLMGTWLEDL", "length": 1910 }, "evidence": [ { "id": "F1SK20", "url": "https://omabrowser.org/oma/group/F1SK20/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BQ33-1", "protein_name": "Treslin", "gene_name": "Ticrr", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MACCHKVMLLVDTAGVSAPHSPARRAALRLLTYLSCRFGLARVHWTFKFFDSQGARSRPSRVSDFRELGSRSWEDFEEELEARLGDRPPGAHLPGPTPRATHTHGALMETLLDYQWDRPEITSPTKPILRSSGRRLLDADGEAREAQAALGGFGNAVFLLAPCPHSQRELLQFVSGCEAQAQRVPLTPKQVMEKVLPKRVQEVMIARNITLYWVDTTERSKLWASPDHVGYWTVCELLHHGGGTILPAETWSLGFTKARETVLPCGGELSHKPHPSPWISALPIDATVNCLLYNSEYEASFPRIEGTLFLPVQGKEIEETWAISLEPLAMHQRHFQKPVRIVLRGSVAQWSLPVSSALGTDSWMLQSPEEHRSTQRLLFQELVSRLTAEEFHLVASVDPGEGWPPITGIISPFSANAMILTVFRAKEAEFQSHFLQTAATEGSQDTASLFSDVVDSVLNQSHNLFEDPASSAPCVPEWVQQELSHTSSWSPALVEKWFPFSNASGATSDLMESFWLLHAASPDNDESSKTESELTRCLSELYQRSHEESTVVNQERSRKKRGIPRTPVRQKMNTMSRSLKMLNVARLNVKAQKLHPDGSPDTAVEKGLQKAVIGRTADKLEDRGRILRSSKLKEFKTEEELLAYIHDNYQKAVATEEITLYSCAQNMVSTIKMFLKSKDIKELEVACLSHVNSNLLKTSKTLRQNLAGKMDTEDKVGECQLQVFLRLEMCEQCPSVLDRPDEVERIVEEVTDLLRLVCLTKDSAYLSEFLEEILRLYIGSIPGTIGQLYHSLGLKIPQKLAGVLPTGFFSDDSMSQESMSPPPSSSTHRSVSAITESEQLEELRTRSAKKRRKNALIRHKSIAEISQTLRQIEVPKVSKRATRNENSHSASIQLPVPRKDTIQEVTKVRRNLFNQEMLSPSKRGLKKGLPRSHSVSALECLHHKQDKFKKTKSSTFQGYCKLLTKSVAETPVHKQISRRLLHRQIKGRSSDPGPDIHVVEESPEKEDEMTLRRSPRIKQLSFSRTNSGSFYSVSQPKSRSVQRIHSSQQESEQRENFPVQSIQSPKTLLFGALSEIPSSSKKGSAQIKRSLRSMLDSEISTSYETPKKSNQKSPSFSKTTPRRFPRTAQTLLYTPERLQNSPTEMTSAEGTISEATIKTPSSHGYNSPFASKVTSQKTVSPAKEETSPPLTKLPSTPRESDVQPPQCSSDCTWPHSVNSSPEGPYYPASPPPMAGQARSQCLTPIRYSFRTPPRTALAGTSKQQEHQELPLPRASQTQEPPQGLEKKALKIPKKPAHTSTSPLSPEEHYSGCDVSPHQPRNSLSASPPPGELNWKEHQTSPSVTSSVSCPVPSTPPRTPQRMTCPIPPSPPSKLRRSCRKKSCPPQDFPECHPGPSAAPVLSSATSPGAVTGSREEQSQFSEGQSYLGTGFRSDCHVSSPVLTASDTKCLPLIDEAQLHGLKNQEVKSGILPGEEGEEPESTIADELPSVSDPGILVPAPSSVSSSSELLPYPLCCTADGKQRQDAAQQGSPRASEATSSPQTYEVELEMQASGLPKLRIKKIDPGVLLEAEALGKEAPLGEEGALPALCMPKASKSSGRTEHPYLSPPCLRPSHSTPGKNGGQTFICQSCTPSRCPPSTPSPFQADAGVSWTPSPKQSGKTTPEIIKDWPRRKRAVDCSAGPSAGRGEASMDLPGSLSLLEPEPEGKERSLEQDLSKVLISEEFELEGVCQLPDQSPPKDSASVTEETSWGQFGLGRKRFLSAKEESEYKVKRVCDSLSEDPQASKQKECSPRWSALPLHSVGDDEVFVSGSTPPSGCMVRSCLSASGLQALTQSPLLFQGRTPSSHSTDTRDEEVDVFPSTAEESPFSHTLSRKRPFRTYTRKKLIS", "length": 1889 }, "evidence": [ { "id": "F1SK20", "url": "https://omabrowser.org/oma/group/F1SK20/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of DNA-templated DNA replication initiation", "id": "GO:0030174", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030174", "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "pmid": "" }, { "name": "DNA replication", "id": "GO:0006260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006260", "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "pmid": "" }, { "name": "response to ionizing radiation", "id": "GO:0010212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010212", "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "pmid": "" }, { "name": "mitotic G2 DNA damage checkpoint signaling", "id": "GO:0007095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007095", "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "pmid": "" }, { "name": "mitotic DNA replication checkpoint signaling", "id": "GO:0033314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033314", "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SK20", "url": "https://www.uniprot.org/uniprotkb/F1SK20" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1203, "end_pos": 1205, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1211, "end_pos": 1213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 503, "end_pos": 505, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK20" }, { "id": "PF15292", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15292" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Treslin M", "eco_id": "ECO_0000259", "start_pos": 281, "end_pos": 424, "start_aa": "Thr", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SK20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK20" }, { "id": "PF21854", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21854" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Treslin N-terminal", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 202, "start_aa": "His", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SK20", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK20" }, { "id": "PF21855", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21855" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Treslin STD", "eco_id": "ECO_0000259", "start_pos": 641, "end_pos": 793, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1355, 1516, 1623, 1646, 1820 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1203, "end_pos": 1205 }, { "start_pos": 1211, "end_pos": 1213 }, { "start_pos": 372, "end_pos": 374 }, { "start_pos": 503, "end_pos": 505 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK76-1", "uniprot_ac": "F1SK76", "uniprot_id": "F1SK76_PIG", "mass": { "chemical_mass": 34887.0, "monoisotopic_mass": 34887.0 }, "refseq": { "ac": "XP_003132771", "name": "olfactory receptor 5AC1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132771" }, "gene_names": [ { "name": "LOC110256239", "type": "recommended", "evidence": [ { "id": "F1SK76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK76" } ] }, { "name": "LOC100514252", "type": "synonym", "evidence": [ { "id": "XP_003132771", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132771" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SK76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK76/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 5AC1-like", "type": "synonym", "evidence": [ { "id": "XP_003132771", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132771" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SK76", "url": "https://www.uniprot.org/uniprotkb/F1SK76#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK76", "url": "https://www.uniprot.org/uniprotkb/F1SK76" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110256239", "url": "https://www.uniprot.org/uniprotkb/F1SK76", "locus": {} } ], "crossref": [ { "id": "F1SK76", "url": "https://alphafold.ebi.ac.uk/entry/F1SK76", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15409", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15409", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110256239", "url": "https://www.ncbi.nlm.nih.gov/gene/110256239", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514252", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514252", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ssc:110256239", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256239", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TFNTCSA", "url": "https://omabrowser.org/oma/group/TFNTCSA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SK76", "url": "https://www.orthodb.org/?gene=F1SK76", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132771", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132771", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SK76", "url": "https://www.uniprot.org/uniprotkb/F1SK76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK76-1", "url": "https://www.uniprot.org/uniprotkb/F1SK76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEENKTLVTEFVLIGLTDLLGWQIPLFLVFLVIYLTTMVGNLGLIFLIWKDPHLHTPMYLFLGSLAFADACSSSSVTPKMLINFLSNSHLIPLSDCMAQFYFFGFSATTECFLLVVMAYDRYVAICNPLLYPVVISTRLCIQFIGVSYFTGFLHSAIHIGFLFRLSFCRSNIIHHFYCEILQVFKISCTDPTVNILLVFIFSAFIQVFTFIAIIVSYTGVLFAILKNKSEKGRSKTFNTCSAHLLSVSLFYGTLFFMYVRPASGPSEGHGKIYSLFYTIIIPLLNPFIYSLRNKEVIGALRRKLKK", "length": 307, "header": "tr|F1SK76-1|F1SK76_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110256239 PE=3 SV=2 CANONICAL=F1SK76-1" }, "isoforms": [ { "isoform_ac": "F1SK76-1", "url": "https://www.uniprot.org/uniprotkb/F1SK76/entry#F1SK76-1", "sequence": { "sequence": "MEEENKTLVTEFVLIGLTDLLGWQIPLFLVFLVIYLTTMVGNLGLIFLIWKDPHLHTPMYLFLGSLAFADACSSSSVTPKMLINFLSNSHLIPLSDCMAQFYFFGFSATTECFLLVVMAYDRYVAICNPLLYPVVISTRLCIQFIGVSYFTGFLHSAIHIGFLFRLSFCRSNIIHHFYCEILQVFKISCTDPTVNILLVFIFSAFIQVFTFIAIIVSYTGVLFAILKNKSEKGRSKTFNTCSAHLLSVSLFYGTLFFMYVRPASGPSEGHGKIYSLFYTIIIPLLNPFIYSLRNKEVIGALRRKLKK", "length": 307, "header": "tr|F1SK76-1|F1SK76_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110256239 PE=3 SV=2 CANONICAL=F1SK76-1" }, "locus": { "chromosome": "13", "start_pos": 161405239, "end_pos": 161404319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013116.3", "url": "https://www.ensembl.org/id/ENSSSCT00000013116.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012771.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012771.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SK76", "url": "https://www.uniprot.org/uniprotkb/F1SK76" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514252", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514252", "resource": "KEGG Pathway" }, { "id": "ssc:110256239", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110256239", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SK76", "url": "https://www.uniprot.org/uniprotkb/F1SK76" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SK76", "url": "https://www.uniprot.org/uniprotkb/F1SK76" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SK76", "url": "https://www.uniprot.org/uniprotkb/F1SK76" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SK76", "url": "https://www.uniprot.org/uniprotkb/F1SK76" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SK76-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 307, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SK76-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SK76" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK76" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 228, "end_pos": 230 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK77-1", "uniprot_ac": "F1SK77", "uniprot_id": "F1SK77_PIG", "mass": { "chemical_mass": 36927.0, "monoisotopic_mass": 36927.0 }, "refseq": {}, "gene_names": [ { "name": "OR5K4", "type": "recommended", "evidence": [ { "id": "F1SK77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK77" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SK77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK77/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SK77", "url": "https://www.uniprot.org/uniprotkb/F1SK77#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK77", "url": "https://www.uniprot.org/uniprotkb/F1SK77" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR5K4", "url": "https://www.uniprot.org/uniprotkb/F1SK77", "locus": { "chromosome": "13", "start_pos": 160992044, "end_pos": 160993003, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011986", "url": "https://www.ensembl.org/id/ENSSSCG00000011986" } ] } } ], "crossref": [ { "id": "F1SK77", "url": "https://alphafold.ebi.ac.uk/entry/F1SK77", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SK77", "url": "https://www.orthodb.org/?gene=F1SK77", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26452", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26452", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SK77", "url": "https://www.uniprot.org/uniprotkb/F1SK77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK77-1", "url": "https://www.uniprot.org/uniprotkb/F1SK77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKENQSLTTEFILVGFTDHPVLKTLLFLVFLTIYLITMVGNLGLVALIFTEHHLHTPMYIFLGNLALMGSCCSSAITPKMIENFFSKDRKISLYECMAQFYFLCLAETADCFFLAAMAYDRYIAICNPLQYHTMMSKKLCVQMTTGIYIASNLHSMIHVGLLLRLTFCRSSQIDHFFCDVLPLYRLSCTNPYINELMIYIFSMPIQIFTIATVLISYVCILFTVFKMKSKEGRGKAFSTCASHFLSVSIFYICLLMYIRPFEEGDKDIPVAIFYTIVIPLLNPFIYSLRNKEVINVLKKIMRNYNILKFHLLWKTNFN", "length": 319, "header": "tr|F1SK77-1|F1SK77_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR5K4 PE=3 SV=4 CANONICAL=F1SK77-1" }, "isoforms": [ { "isoform_ac": "F1SK77-1", "url": "https://www.uniprot.org/uniprotkb/F1SK77/entry#F1SK77-1", "sequence": { "sequence": "MDKENQSLTTEFILVGFTDHPVLKTLLFLVFLTIYLITMVGNLGLVALIFTEHHLHTPMYIFLGNLALMGSCCSSAITPKMIENFFSKDRKISLYECMAQFYFLCLAETADCFFLAAMAYDRYIAICNPLQYHTMMSKKLCVQMTTGIYIASNLHSMIHVGLLLRLTFCRSSQIDHFFCDVLPLYRLSCTNPYINELMIYIFSMPIQIFTIATVLISYVCILFTVFKMKSKEGRGKAFSTCASHFLSVSIFYICLLMYIRPFEEGDKDIPVAIFYTIVIPLLNPFIYSLRNKEVINVLKKIMRNYNILKFHLLWKTNFN", "length": 319, "header": "tr|F1SK77-1|F1SK77_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR5K4 PE=3 SV=4 CANONICAL=F1SK77-1" }, "locus": { "chromosome": "13", "start_pos": 160993003, "end_pos": 160992047, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013115.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013115.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012770.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012770.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SK77", "url": "https://www.uniprot.org/uniprotkb/F1SK77" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SK77", "url": "https://www.uniprot.org/uniprotkb/F1SK77" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SK77", "url": "https://www.uniprot.org/uniprotkb/F1SK77" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SK77", "url": "https://www.uniprot.org/uniprotkb/F1SK77" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SK77", "url": "https://www.uniprot.org/uniprotkb/F1SK77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SK77-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 319, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SK77-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SK77" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK77" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 258, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK87-1", "uniprot_ac": "F1SK87", "uniprot_id": "F1SK87_PIG", "mass": { "chemical_mass": 48764.0, "monoisotopic_mass": 48764.0 }, "refseq": { "ac": "XP_003481752", "name": "integrin-alpha FG-GAP repeat-containing protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481752" }, "gene_names": [ { "name": "ITFG2", "type": "recommended", "evidence": [ { "id": "F1SK87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ] }, { "name": "ITFG2", "type": "synonym", "evidence": [ { "id": "XP_003481752", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481752" } ] } ], "protein_names": [ { "name": "Integrin alpha FG-GAP repeat containing 2", "type": "synonym", "evidence": [ { "id": "F1SK87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK87/entry#names_and_taxonomy" } ] }, { "name": "integrin-alpha FG-GAP repeat-containing protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003481752", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481752" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ITFG2", "url": "https://www.uniprot.org/uniprotkb/F1SK87", "locus": { "chromosome": "5", "start_pos": 67291772, "end_pos": 67305607, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000742", "url": "https://www.ensembl.org/id/ENSSSCG00000000742" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000742", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000742", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512166", "url": "https://www.ncbi.nlm.nih.gov/gene/100512166", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028994", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028994", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031793", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031793", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512166", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512166", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LNKWECA", "url": "https://omabrowser.org/oma/group/LNKWECA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SK87", "url": "https://www.orthodb.org/?gene=F1SK87", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16317", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16317", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16317:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16317:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15907", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15907", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9639288", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9639288", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003481752", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481752", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK87-1", "url": "https://www.uniprot.org/uniprotkb/F1SK87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKLLVYKNDDSRPWLTCSCQGMLTCVGVGDVCNKGKNLVVAVSAEGWFHLCDLTPAKALDASGHHETLVGEEQRPVFKQHIPANTKVMLISDIDGDGRCELVLGYTDRVVRAFRWEDLGDGTEHLMGQLVSLKKWMLEGQVDSLSVTPGPLGVPELMVSQPGCAYAILLCTWNKDPGAPPTSEVPSEGTRETPAARDVVLHQTSGRIHNKNVSTHLVGNIKRGHSPESGASGLFALCTLDGTLKLMEQADKLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCTGLYACKGGHNSPCLVYVTFNQKIYVYWEVQLERMESTNLLKLLEAEPEYRDLLQELGVDPDDLPAARALLHHSLYHPDQAPRCAPTGLQGPT", "length": 444, "header": "tr|F1SK87-1|F1SK87_PIG Isoform 1 of Integrin alpha FG-GAP repeat containing 2 OS=Sus scrofa OX=9823 GN=ITFG2 PE=4 SV=3 CANONICAL=F1SK87-1" }, "isoforms": [ { "isoform_ac": "F1SK87-1", "url": "https://www.uniprot.org/uniprotkb/F1SK87/entry#F1SK87-1", "sequence": { "sequence": "MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKLLVYKNDDSRPWLTCSCQGMLTCVGVGDVCNKGKNLVVAVSAEGWFHLCDLTPAKALDASGHHETLVGEEQRPVFKQHIPANTKVMLISDIDGDGRCELVLGYTDRVVRAFRWEDLGDGTEHLMGQLVSLKKWMLEGQVDSLSVTPGPLGVPELMVSQPGCAYAILLCTWNKDPGAPPTSEVPSEGTRETPAARDVVLHQTSGRIHNKNVSTHLVGNIKRGHSPESGASGLFALCTLDGTLKLMEQADKLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCTGLYACKGGHNSPCLVYVTFNQKIYVYWEVQLERMESTNLLKLLEAEPEYRDLLQELGVDPDDLPAARALLHHSLYHPDQAPRCAPTGLQGPT", "length": 444, "header": "tr|F1SK87-1|F1SK87_PIG Isoform 1 of Integrin alpha FG-GAP repeat containing 2 OS=Sus scrofa OX=9823 GN=ITFG2 PE=4 SV=3 CANONICAL=F1SK87-1" }, "locus": { "chromosome": "5", "start_pos": 67305478, "end_pos": 67293867, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000806.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000806.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000790.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000790.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 189, "start_aa": "Thr", "end_pos": 189, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr189", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512166", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512166", "resource": "KEGG Pathway" }, { "id": "R-SSC-9639288", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9639288", "resource": "Reactome", "description": "Amino acids regulate mTORC1" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LWZ2-1", "protein_name": "Integrin alpha FG-GAP repeat containing 2", "gene_name": "Itfg2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSVSYVQRVALDFSGSLFPHAICLGDVDNDALNELVVGDTSGKLYVYKSDDSRPWLTCACQGMLTCVGVGDVCNKGKNLVVAVSAEGWLHLFDLTPTKALDASGHHETLVEEQRPVFKQHIPANTKVMLISDIDGDGCYELVVGYTDRVVRAFRWEELTEGPEHLAGQLVSLKKWMLEGQVDSLSVTPGPLGVPELVVSQPGCAYAVLLCTWNKDTGSPPASEEATGDSRETPAARDVVLHQTSGRIHNKNVSTHLIGNIKQGHYPESGNAGLFALCTLDGTLKLMQEADKLLWSVQVDHQLFALEKLDVTGNGLEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGQYACKEGRNSPCLVYVTFNQKIYVYWEVQLERMESTNLLKLLEAEPEYHSLLQELGVDRASLAITEMATLTGHRASRLPLPIPVSSPGITSVTMQDHKESYL", "length": 454 }, "evidence": [ { "id": "F1SK87", "url": "https://omabrowser.org/oma/group/F1SK87/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B7X1-1", "protein_name": "Integrin alpha FG-GAP repeat containing 2", "gene_name": "ITFG2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKLSVYKNDDSRPWLTCSCQGMLTCVGVGDVCNKGKNLVVAVSAEGWFHLCDLTPAKSLDGSGHHETLGGEEQRPVFKQHIPANTKVMLISDIDGDGRCELVVGYTDRVVRAFRWEDLGEGAEHPMGQLVLLKKWMLEGQVDSLSVTPGPLGVPELMVSQPGCAYAILLCTWNKDPGATPTSEGPMEGTREPLAARDVVLHQTSGRIHNKNVSTHLIGNIKRGHSPDSSASGLFALCTLDGTLKLMEEADRLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGLYACKDSRNSPCLVYVTFNQKIYVYWEVQLERMESTNLLKVLEAQPEFRELLGELGVDPDELPAARALLHQTLYHPNQPPQCSPAGPQDPT", "length": 444 }, "evidence": [ { "id": "F1SK87", "url": "https://omabrowser.org/oma/group/F1SK87/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3GUI4-1", "protein_name": "KICSTOR complex protein ITFG2 isoform X1", "gene_name": "Itfg2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRSVSYVQRVALDFSGSLFPHAICLGDVDNDALNELVVGDTSGKLSVYKNDDSRPWLTCSCQGMLTCVGVGDVCNKGKNLVVAVSAEGWLHLFDLTSTKALDASGHHETLGEEQRPVFKQHIPANTKVMLISDIDGDGCYELVVGYTDRVVRAFRWEEMAEAPEHLTGQLVSLKKWMLEGQVDSLSVTPGPLGVPELVVSQPGCAYAVLLCTWNKDTGSPPASEEATGDSRETPAARDIVLHQTSGRIHNKNVSTHLIGNIKQGHNPETGNSGLFALCTLDGTLKLMQEADKLLWSVQVDHQLFALEKLDVTGNGLEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGQYACKEGRNSPCLVYVTFNQKIYVYWDVVLERMASTNLLKLLEAEPEYHSLLQELHVDPEDLPAVRALLHQTLYHPDQTPQCAPSSSQDPT", "length": 443 }, "evidence": [ { "id": "F1SK87", "url": "https://omabrowser.org/oma/group/F1SK87/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5RHI2-1", "protein_name": "KICSTOR complex protein ITFG2", "gene_name": "itfg2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRSVSYVQRVSLDFTGTLFPHAICLGDADNDSLNELVVGDTSGKLYIYKNDDCKPWITRSCVGMLTCVGVGDVCNKGRNVVVAVGAEGWFHLFDISSAAAKSDSSSQQDGSTGDEQKPSYTQHIPANTKVMLISDIDGDGRCELVVGYTDRVVRAFRWEEPSDASDMSSGQLVLLKKWLLEGQVDSLSVNPSPEGLPELMVSQPGCGYAILMCSWTQEGAAGPGDENTATPSREGSSRDVVLHLTTGRIHNKNVSTHLIGSISRGSKDESSKGGLFALCTLDGTLKLMDSSEKLLWSVQVDHQLFALQKLDVTGDGREEVVACAWDGQTYIIDHTRMVVRFQFDENVNAFCAGQYACKDGRNSPCLVYVSFNHKIYVYWRVELERMEPTNLLSVLEDRPEYPHLLHRLGVDMSDTVAVRKLIGDVLYKNIPKDGAQ", "length": 436 }, "evidence": [ { "id": "F1SK87", "url": "https://omabrowser.org/oma/group/F1SK87/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q91WI7-1", "protein_name": "KICSTOR complex protein ITFG2", "gene_name": "Itfg2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRSVSYVQRVALDFSGSLFPHAICLGDVDNDALNELVVGDTSGKLSVYKNDDSRPWLTCMCQGMLTCVGVGDVCNKGKNLVVAVSAEGWLHLFDLTPTKALDASGHHETLGEEQRPVFKQHIPANTKVMLISDIDGDGCYELVVGYTDRVVRAFRWEELAEGPEHLAGQLVSLKKWMLEGQVDSLSVTPGPLGVPELVVSQPGCAYAVLLCTWNKDTGSPPASEEATGDSRETPAARDVVLHQTSGRIHNKNVSTHLIGNIRQGHNPEGGNAGLFALCTLDGTLKLMQEADKLLWSVQVDHQLFALEKLDVTGNGLEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGQYACKEGRNSPCLVYVTFNQKIYVYWEVQLERMESTNLLKLLEAEPEYHRLLQELRVDPEDLPAVCTLLHQTLYHPDQPLQCTPSSFQDPT", "length": 443 }, "evidence": [ { "id": "F1SK87", "url": "https://omabrowser.org/oma/group/F1SK87/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q969R8-1", "protein_name": "KICSTOR complex protein ITFG2", "gene_name": "ITFG2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKVSVYKNDDSRPWLTCSCQGMLTCVGVGDVCNKGKNLLVAVSAEGWFHLFDLTPAKVLDASGHHETLIGEEQRPVFKQHIPANTKVMLISDIDGDGCRELVVGYTDRVVRAFRWEELGEGPEHLTGQLVSLKKWMLEGQVDSLSVTLGPLGLPELMVSQPGCAYAILLCTWKKDTGSPPASEGPTDGSRETPAARDVVLHQTSGRIHNKNVSTHLIGNIKQGHGTESSGSGLFALCTLDGTLKLMEEMEEADKLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENIRAFCAGLYACKEGRNSPCLVYVTFNQKIYVYWEVQLERMESTNLVKLLETKPEYHSLLQELGVDPDDLPVTRALLHQTLYHPDQPPQCAPSSLQDPT", "length": 447 }, "evidence": [ { "id": "F1SK87", "url": "https://omabrowser.org/oma/group/F1SK87/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "KICSTOR complex", "id": "GO:0140007", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140007", "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cellular response to glucose starvation", "id": "GO:0042149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042149", "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "pmid": "" }, { "name": "regulation of TOR signaling", "id": "GO:0032006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032006", "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "pmid": "" }, { "name": "cellular response to amino acid starvation", "id": "GO:0034198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034198", "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "pmid": "" }, { "name": "negative regulation of TORC1 signaling", "id": "GO:1904262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904262", "evidence": [ { "database": "UniProtKB", "id": "F1SK87", "url": "https://www.uniprot.org/uniprotkb/F1SK87" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 335, "end_pos": 337, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 189 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 253, "end_pos": 255 }, { "start_pos": 30, "end_pos": 32 }, { "start_pos": 335, "end_pos": 337 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SK94-1", "uniprot_ac": "F1SK94", "uniprot_id": "F1SK94_PIG", "mass": { "chemical_mass": 41002.0, "monoisotopic_mass": 41002.0 }, "refseq": { "ac": "XP_020926345", "name": "G-protein coupled receptor 15", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926345" }, "gene_names": [ { "name": "GPR15", "type": "recommended", "evidence": [ { "id": "F1SK94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ] }, { "name": "GPR15", "type": "synonym", "evidence": [ { "id": "XP_020926345", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926345" } ] } ], "protein_names": [ { "name": "G-protein coupled receptor 15", "type": "recommended", "evidence": [ { "id": "F1SK94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK94/entry#names_and_taxonomy" } ] }, { "name": "G-protein coupled receptor 15", "type": "synonym", "evidence": [ { "id": "XP_020926345", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926345" } ] } ], "function": [ { "annotation": "G protein-coupled receptor that plays an important role in immune homeostasis. Acts via its natural ligand GPR15LG, a chemokine-like polypeptide strongly expressed in gastrointestinal tissues. GPR15-GPR15LG signaling axis regulates intestinal homeostasis and inflammation through the migration of immune cells. Controls thereby the specific homing of T-cells, particularly FOXP3+ regulatory T-cells (Tregs), to the large intestine lamina propria. Also required for skin localization of thymus-derived dendritic epidermal T-cells. Plays an important role in mediating cytoprotective function as well as angiogenesis of thrombomodulin. Mechanistically, preferentially signals through the Gi/o pathway to inhibit adenylate cyclase activity and activate a phosphatidylinositol-calcium second messenger system that regulates the release of Ca(2+) ions from intracellular stores.", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94#function" }, { "database": "UniProtKB", "id": "ARBA00093298", "url": "https://www.uniprot.org/uniprotkb/ARBA00093298#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GPR15", "url": "https://www.uniprot.org/uniprotkb/F1SK94", "locus": { "chromosome": "13", "start_pos": 160386728, "end_pos": 160389384, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000058669", "url": "https://www.ensembl.org/id/ENSSSCG00000058669" } ] } } ], "crossref": [ { "id": "F1SK94", "url": "https://alphafold.ebi.ac.uk/entry/F1SK94", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011979", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011979", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153787", "url": "https://www.ncbi.nlm.nih.gov/gene/100153787", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153787", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153787", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LTFYCSI", "url": "https://omabrowser.org/oma/group/LTFYCSI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SK94", "url": "https://www.orthodb.org/?gene=F1SK94", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10489", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10489", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10489:SF954", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10489:SF954", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020926345", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926345", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SK94-1", "url": "https://www.uniprot.org/uniprotkb/F1SK94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METVMDPEATSVYLDYSYITSENPDIEEAPSHLPYTSVFLPIFYTAVFLIGVLGNLILMSALHFKRGSQRLIDIFIINLAASDFIFLITLPVWVDKERSLGLWRTGSFLCKGSSYVISVNMHCSVFLLTCMSVDRYLAIVCPAISRKLRRRDCAYGVCASVWFISCLLGLPTLLSRELTLIDGKPYCAEKKATSIKLTWALVALIFTFFAPLVSMVTCYCCITRKLCVRYQQSGRHNKKLRKSIKIIFIVVAAFVFSWLPFNTFKLLAIVSGLQQELHFSSAFLQWGMEVSGPLAFANSCVNPFIYYIFDSYIRRAIVHCLCPCLKNYDFGSSTETSDLTKALSNFIQGEDFARRRKRSVSL", "length": 362, "header": "tr|F1SK94-1|F1SK94_PIG Isoform 1 of G-protein coupled receptor 15 OS=Sus scrofa OX=9823 GN=GPR15 PE=3 SV=2 CANONICAL=F1SK94-1" }, "isoforms": [ { "isoform_ac": "F1SK94-1", "url": "https://www.uniprot.org/uniprotkb/F1SK94/entry#F1SK94-1", "sequence": { "sequence": "METVMDPEATSVYLDYSYITSENPDIEEAPSHLPYTSVFLPIFYTAVFLIGVLGNLILMSALHFKRGSQRLIDIFIINLAASDFIFLITLPVWVDKERSLGLWRTGSFLCKGSSYVISVNMHCSVFLLTCMSVDRYLAIVCPAISRKLRRRDCAYGVCASVWFISCLLGLPTLLSRELTLIDGKPYCAEKKATSIKLTWALVALIFTFFAPLVSMVTCYCCITRKLCVRYQQSGRHNKKLRKSIKIIFIVVAAFVFSWLPFNTFKLLAIVSGLQQELHFSSAFLQWGMEVSGPLAFANSCVNPFIYYIFDSYIRRAIVHCLCPCLKNYDFGSSTETSDLTKALSNFIQGEDFARRRKRSVSL", "length": 362, "header": "tr|F1SK94-1|F1SK94_PIG Isoform 1 of G-protein coupled receptor 15 OS=Sus scrofa OX=9823 GN=GPR15 PE=3 SV=2 CANONICAL=F1SK94-1" }, "locus": { "chromosome": "13", "start_pos": 160389338, "end_pos": 160388253, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106062.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106062.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076528.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076528.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153787", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153787", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XT78-1", "protein_name": "G-protein coupled receptor 15", "gene_name": "GPR15", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRTAGPEMDLIKLSPMTTVTFNYDDYYEDSCQYEQLQHMTAFLPVLYAAVFLVGILGNSILIVALVFKRRVQRLIDIFIINLAASDFIFLITLPFWVDKEASDGIWRVGSFLCKASSYIISVNMYCSILLLTCMSADRYLAIMYPSIARKVRTRSYSSGLCFCVWLLSCCLGMPTLLSRELTERYGKMYCTDKAMTESKQITSLMILILAFFFPLLSILTFYCSITRRLCVHYQRSGKHDKKLRKSIKIVFIVVAAFVISWVPFNLFKLMAILLGLQKLPDCFLGMVAQVGMTVSSPFAFANSCANPFIYYCFDNYIRRAMLRCLCPWVKASSGSTISDTMDTRLSHSLSNFITGDYTARKRKRSVSL", "length": 368 }, "evidence": [ { "id": "F1SK94", "url": "https://omabrowser.org/oma/group/F1SK94/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4AA67-1", "protein_name": "G-protein coupled receptor 15", "gene_name": "Gpr15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPATTLFYLDYYDATSPDPRIMETPSHTSYTSVFLPVFYTAVFLTGVLGNFILMVTLHFKHRNRRLIDIFIINLAASDFIFLVTLPLWVDKEASLGLWRTGSLLCKGSSYTISVNMHCNVFLLTCMSMDRYLAIMRPTLARRLRRRSCAYAVCAVIWIISCLLGLPTLLSRGLTHIEGKPYCAEKKPTSLKLMWGLVALIATFFVPLLSIVSSYCCITRRLCAHYQQSGKHNKKLRKSIKIIVIVVAAFTISWVPFNTVKLLAIVSGLQPESQFPSESLQQAMKVTGSLAFANSCVNPLLYYIFDSYIRRAIVRSLCPCLKIHNIGSSTETLDSHLTKALANFIHSEDFVKRRKRSVSL", "length": 360 }, "evidence": [ { "id": "F1SK94", "url": "https://omabrowser.org/oma/group/F1SK94/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P49685-1", "protein_name": "G protein-coupled receptor 15", "gene_name": "GPR15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPEETSVYLDYYYATSPNSDIRETHSHVPYTSVFLPVFYTAVFLTGVLGNLVLMGALHFKPGSRRLIDIFIINLAASDFIFLVTLPLWVDKEASLGLWRTGSFLCKGSSYMISVNMHCSVLLLTCMSVDRYLAIVWPVVSRKFRRTDCAYVVCASIWFISCLLGLPTLLSRELTLIDDKPYCAEKKATPIKLIWSLVALIFTFFVPLLSIVTCYCCIARKLCAHYQQSGKHNKKLKKSIKIIFIVVAAFLVSWLPFNTFKFLAIVSGLRQEHYLPSAILQLGMEVSGPLAFANSCVNPFIYYIFDSYIRRAIVHCLCPCLKNYDFGSSTETSDSHLTKALSTFIHAEDFARRRKRSVSL", "length": 360 }, "evidence": [ { "id": "F1SK94", "url": "https://omabrowser.org/oma/group/F1SK94/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0VDU3-1", "protein_name": "G protein-coupled receptor 15", "gene_name": "Gpr15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPATALLIVDYYDYTSPDPPFLETPSHLSYTSVFLPIFYTVVFLTGVVGNFILMIALHFKRGNRRLIDIFIINLAASDFIFLVTVPLWMDKEASLGLWRTGSFLCKGSSYVISVNMHCSVFLLTCMSMDRYLAIMHPALAKRLRRRSSAYAVCAVVWIISCVLGLPTLLSRELTHIEGKPYCAEKKPTSLKLMWGLVALITTFFVPLLSIVTCYCCITRRLCAHYQQSGKHNKKLKKSIKIVIIAVAAFTVSWVPFNTFKLLAIVSGFQPEGLFHSEALQLAMNVTGPLAFASSCVNPLIYYVFDSYIRRAIVRCLCPCLKTHNFGSSTETSDSHLTKALSNFIHAEDFIRRRKRSVSL", "length": 360 }, "evidence": [ { "id": "F1SK94", "url": "https://omabrowser.org/oma/group/F1SK94/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "angiogenesis", "id": "GO:0001525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001525", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "pmid": "" }, { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "pmid": "" }, { "name": "T cell migration", "id": "GO:0072678", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072678", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "pmid": "" }, { "name": "coreceptor activity", "id": "GO:0015026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015026", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "pmid": "" }, { "name": "virus receptor activity", "id": "GO:0001618", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001618", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SK94", "url": "https://www.uniprot.org/uniprotkb/F1SK94" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SK94-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 362, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SK94-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SK94" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SK94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SK94" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 306, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKA1-1", "uniprot_ac": "F1SKA1", "uniprot_id": "F1SKA1_PIG", "mass": { "chemical_mass": 27289.0, "monoisotopic_mass": 27289.0 }, "refseq": { "ac": "XP_003126615", "name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126615" }, "gene_names": [ { "name": "RHNO1", "type": "recommended", "evidence": [ { "id": "F1SKA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ] }, { "name": "RHNO1", "type": "synonym", "evidence": [ { "id": "XP_003126615", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126615" } ] } ], "protein_names": [ { "name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003126615", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126615" } ] }, { "name": "RAD9-HUS1-RAD1 interacting nuclear orphan 1", "type": "synonym", "evidence": [ { "id": "F1SKA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKA1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RHNO1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1", "locus": { "chromosome": "5", "start_pos": 67239202, "end_pos": 67246124, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000738", "url": "https://www.ensembl.org/id/ENSSSCG00000000738" } ] } } ], "crossref": [ { "id": "F1SKA1", "url": "https://alphafold.ebi.ac.uk/entry/F1SKA1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000738", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000738", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511381", "url": "https://www.ncbi.nlm.nih.gov/gene/100511381", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511381", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511381", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PKHHYGS", "url": "https://omabrowser.org/oma/group/PKHHYGS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKA1", "url": "https://www.orthodb.org/?gene=F1SKA1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35541", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35541", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35541:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35541:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15319", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15319", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5685938", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693607", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69473", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126615", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126615", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKA1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPRKRRRPPSRKPQLLFHQRPLEGPKHRCGSPQLPITHTRQVPSKPIDHSTITSWVSPQFDTTAESWLPDNQKRRHRDQARRSSRKSASSKFPHLAFESPPSSASSATLGIPLIRDHPSQPEKDISRRPLVPLLSPQSCGELSAQELHSFPYVLLPPDIQTPESLMKGGLIPSEQRENSPPSCSLPTSVPESPEPGPVLVEDTPEEKYGLKVTWRRRRHLFTYLRERGKLSRNQFLVKN", "length": 240, "header": "tr|F1SKA1-1|F1SKA1_PIG Isoform 1 of RAD9-HUS1-RAD1 interacting nuclear orphan 1 OS=Sus scrofa OX=9823 GN=RHNO1 PE=4 SV=2 CANONICAL=F1SKA1-1" }, "isoforms": [ { "isoform_ac": "F1SKA1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1/entry#F1SKA1-1", "sequence": { "sequence": "MPPRKRRRPPSRKPQLLFHQRPLEGPKHRCGSPQLPITHTRQVPSKPIDHSTITSWVSPQFDTTAESWLPDNQKRRHRDQARRSSRKSASSKFPHLAFESPPSSASSATLGIPLIRDHPSQPEKDISRRPLVPLLSPQSCGELSAQELHSFPYVLLPPDIQTPESLMKGGLIPSEQRENSPPSCSLPTSVPESPEPGPVLVEDTPEEKYGLKVTWRRRRHLFTYLRERGKLSRNQFLVKN", "length": 240, "header": "tr|F1SKA1-1|F1SKA1_PIG Isoform 1 of RAD9-HUS1-RAD1 interacting nuclear orphan 1 OS=Sus scrofa OX=9823 GN=RHNO1 PE=4 SV=2 CANONICAL=F1SKA1-1" }, "locus": { "chromosome": "5", "start_pos": 67242032, "end_pos": 67240691, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043604.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043604.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053118.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053118.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511381", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511381", "resource": "KEGG Pathway" }, { "id": "R-SSC-5685938", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "resource": "Reactome", "description": "HDR through Single Strand Annealing (SSA)" }, { "id": "R-SSC-5693607", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "resource": "Reactome", "description": "Processing of DNA double-strand break ends" }, { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" }, { "id": "R-SSC-69473", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "resource": "Reactome", "description": "G2/M DNA damage checkpoint" } ], "orthologs": [ { "uniprot_canonical_ac": "E7F2N1-1", "protein_name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1", "gene_name": "rhno1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPRTSHKKRLLNPLKSQLLFKEAPINGPKHEYGAQLRSAIHPRSFISEKQQRGDAPWVSPQFNSHATTRVSRGGRGKRNHQVATRITNKASALCLPQTRKASVSRFTPLSFQATTIQGLENLRHPQTKKNTFVSSDKHQKELQETPRRSKCARKCTEKRMLTRVKSATSKYTEVSKSLTFHNNGKGLTNALIQTPNTSLVPDPPHVETPEVPNCSSISPSNVQQLIFPPSQAKTPPRAENTSVLVEDTPEKDYGLRVTWRRRKGLMKLLIDKGQLLLKDAEVANEWI", "length": 287 }, "evidence": [ { "id": "F1SKA1", "url": "https://omabrowser.org/oma/group/F1SKA1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1LZE2-1", "protein_name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1", "gene_name": "RHNO1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPPRKKRRQAAQKPQLLFHQQPLEAPKHRCRFPQLPVVTHTRQVPSKPVDHNTITSWVSPQFDTTAESWFPGKRKHHHRDHARRSSRKSTSSRFPCLTFETPQSSASSATPGILASRDGPSQPEKDISGRPLVPMLSPQSCRELSAHTFPDFPCVFIPPDIQTPESPGQGEPIPSELRENSLPSCSLHTSTPKSPEPGPVLVTDTPEEKYGIKVTWRRRRHLFAYLRERGKLSRSQFLVKD", "length": 241 }, "evidence": [ { "id": "F1SKA1", "url": "https://omabrowser.org/oma/group/F1SKA1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AY26-1", "protein_name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1", "gene_name": "Rhno1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPPRKRRRQCQKAQLLFHQQPLEGPKPHYESHQQPITHTVQVPSKPIDQSTITSWVLPQFDTAAESRFPTHRKHHRDQARHPTRRSTCKFPRLTFESPESSSSETLLLSNREQLQNSEKDAPRRPLVPLFSPQSCGELSVHVPQSLPHVFMPPDIQTPGSSVREDPISPDQKENSLPSCILGPRTPRTPEPGPVLVKDTPEEKYGIKVTWRRRRHLFAYLKERGKLDKSQFLVKT", "length": 235 }, "evidence": [ { "id": "F1SKA1", "url": "https://omabrowser.org/oma/group/F1SKA1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8K3A4-1", "protein_name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1", "gene_name": "Rhno1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPPKKRRRQSQKAQLLFHQQPLEGPKHHYESCQQPITHTVQVPSKPIDQSTVTSWVSPQFDRAAESRFLIHWKPHRDQARRPTRRSTCKFPRLTFESPQSSSSETLLLSNRVQPQNSEKDPPRRPLVPLFSPQSCGELSVHVPHSLPHVFAPPDIQTPDSSVRDDPISPDQKENSFPSCILGPGTPSSPEPGPVLVKDTPEEKYGIKVTWRRRRHLFAYLKEKGKLDGSQFLVKI", "length": 235 }, "evidence": [ { "id": "F1SKA1", "url": "https://omabrowser.org/oma/group/F1SKA1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BSD3-1", "protein_name": "RAD9, HUS1, RAD1-interacting nuclear orphan protein 1", "gene_name": "RHNO1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPPRKKRRQPSQKAPLLFHQQPLEGPKHSCASTQLPITHTRQVPSKPIDHSTITSWVSPDFDTAAGSLFPAYQKHQNRARHSSRKPTTSKFPHLTFESPQSSSSETLGIPLIRECPSESEKDVSRRPLVPVLSPQSCGNMSVQALQSLPYVFIPPDIQTPESSSVKEELIPQDQKENSLLSCTLHTGTPNSPEPGPVLVKDTPEDKYGIKVTWRRRQHLLAYLRERGKLSRSQFLVKS", "length": 238 }, "evidence": [ { "id": "F1SKA1", "url": "https://omabrowser.org/oma/group/F1SKA1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "protein localization to site of double-strand break", "id": "GO:1990166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990166", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" }, { "name": "double-strand break repair via alternative nonhomologous end joining", "id": "GO:0097681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097681", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" }, { "name": "cellular response to UV", "id": "GO:0034644", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034644", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" }, { "name": "cellular response to ionizing radiation", "id": "GO:0071479", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071479", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" }, { "name": "DNA damage checkpoint signaling", "id": "GO:0000077", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000077", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" }, { "name": "positive regulation of G0 to G1 transition", "id": "GO:0070318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070318", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" }, { "name": "recombinational repair", "id": "GO:0000725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000725", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" }, { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chromatin-protein adaptor activity", "id": "GO:0140463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140463", "evidence": [ { "database": "UniProtKB", "id": "F1SKA1", "url": "https://www.uniprot.org/uniprotkb/F1SKA1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKA1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 240, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKA1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKA1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKC9-1", "uniprot_ac": "F1SKC9", "uniprot_id": "F1SKC9_PIG", "mass": { "chemical_mass": 48339.0, "monoisotopic_mass": 48339.0 }, "refseq": { "ac": "XP_003358647", "name": "zinc finger protein ZIC 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358647" }, "gene_names": [ { "name": "ZIC1", "type": "recommended", "evidence": [ { "id": "F1SKC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ] }, { "name": "ZIC1", "type": "synonym", "evidence": [ { "id": "XP_003358647", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358647" } ] } ], "protein_names": [ { "name": "Zic family member 1", "type": "synonym", "evidence": [ { "id": "F1SKC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKC9/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein ZIC 1", "type": "synonym", "evidence": [ { "id": "XP_003358647", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358647" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZIC1", "url": "https://www.uniprot.org/uniprotkb/F1SKC9", "locus": { "chromosome": "13", "start_pos": 87750192, "end_pos": 87745552, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011692", "url": "https://www.ensembl.org/id/ENSSSCG00000011692" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011692", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011692", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153570", "url": "https://www.ncbi.nlm.nih.gov/gene/100153570", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153570", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153570", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MKVHSKS", "url": "https://omabrowser.org/oma/group/MKVHSKS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKC9", "url": "https://www.orthodb.org/?gene=F1SKC9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45718", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45718", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45718:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45718:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18366", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18366", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23561", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23561", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003358647", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358647", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SKC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLDAGPQYPAIGVTTFGASRHHSAGDVAERDVGLGINPFADGMGAFKLNPSSHELASAGQTAFTSQAPGYAAAAALGHHHHPGHVGSYSSAAFNSTRDFLFRNRGFGDAAAAASAQHSLFAASAGGFGGPHGHTDAAGHLLFPGLHEQATGHASPNVVNGQMRLGFSGDMYPRPEQYGQVTSPRSEHYAAPQLHGYGPMNVNMAAHHGAGAFFRYMRQPIKQELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHICFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESSSQGSQPSPAASSGYESSTPPTIVSPSTDNPTTSSLSPSSSAVHHTAGHSALSSNFNEWYV", "length": 447, "header": "tr|F1SKC9-1|F1SKC9_PIG Isoform 1 of Zic family member 1 OS=Sus scrofa OX=9823 GN=ZIC1 PE=3 SV=1 CANONICAL=F1SKC9-1" }, "isoforms": [ { "isoform_ac": "F1SKC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SKC9/entry#F1SKC9-1", "sequence": { "sequence": "MLLDAGPQYPAIGVTTFGASRHHSAGDVAERDVGLGINPFADGMGAFKLNPSSHELASAGQTAFTSQAPGYAAAAALGHHHHPGHVGSYSSAAFNSTRDFLFRNRGFGDAAAAASAQHSLFAASAGGFGGPHGHTDAAGHLLFPGLHEQATGHASPNVVNGQMRLGFSGDMYPRPEQYGQVTSPRSEHYAAPQLHGYGPMNVNMAAHHGAGAFFRYMRQPIKQELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHICFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESSSQGSQPSPAASSGYESSTPPTIVSPSTDNPTTSSLSPSSSAVHHTAGHSALSSNFNEWYV", "length": 447, "header": "tr|F1SKC9-1|F1SKC9_PIG Isoform 1 of Zic family member 1 OS=Sus scrofa OX=9823 GN=ZIC1 PE=3 SV=1 CANONICAL=F1SKC9-1" }, "locus": { "chromosome": "13", "start_pos": 87749188, "end_pos": 87745751, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012800.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012800.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012462.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012462.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153570", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153570", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P46684-1", "protein_name": "Zinc finger protein ZIC 1", "gene_name": "Zic1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLDAGPQYPAIGVTTFGASRHHSAGDVAERDVGLGINPFADGMGAFKLNPSSHELASAGQTAFTSQAPGYAAAAALGHHHHPGHVGSYSSAAFNSTRDFLFRNRGFGDAAAAASAQHSLFAASAGGFGGPHGHTDAAGHLLFSGLHEQAAGHASPNVVNGQMRLGFSGDMYPRPEQYGQVTSPRSEHYAAPQLHGYGPMNVNMAAHHGAGAFFRYMRQPIKQELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHICFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESSSQGSQPSPAASSGYESSTPPTIVSPTTDNPTTSSMSPSSSAVHHTAGHSALSSNFNEWYV", "length": 447 }, "evidence": [ { "id": "F1SKC9", "url": "https://omabrowser.org/oma/group/F1SKC9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q15915-1", "protein_name": "Zinc finger protein ZIC 1", "gene_name": "ZIC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLLDAGPQYPAIGVTTFGASRHHSAGDVAERDVGLGINPFADGMGAFKLNPSSHELASAGQTAFTSQAPGYAAAAALGHHHHPGHVGSYSSAAFNSTRDFLFRNRGFGDAAAAASAQHSLFAASAGGFGGPHGHTDAAGHLLFPGLHEQAAGHASPNVVNGQMRLGFSGDMYPRPEQYGQVTSPRSEHYAAPQLHGYGPMNVNMAAHHGAGAFFRYMRQPIKQELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHICFWEECPREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESSSQGSQPSPAASSGYESSTPPTIVSPSTDNPTTSSLSPSSSAVHHTAGHSALSSNFNEWYV", "length": 447 }, "evidence": [ { "id": "F1SKC9", "url": "https://omabrowser.org/oma/group/F1SKC9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "pmid": "" }, { "name": "central nervous system development", "id": "GO:0007417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007417", "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "pmid": "" }, { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SKC9", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 345, "end_pos": 347, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKC9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 274, "end_pos": 301, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 243, "end_pos": 245 }, { "start_pos": 345, "end_pos": 347 }, { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKD7-1", "uniprot_ac": "F1SKD7", "uniprot_id": "F1SKD7_PIG", "mass": { "chemical_mass": 122844.0, "monoisotopic_mass": 122844.0 }, "refseq": { "ac": "XP_001927863", "name": "leucine-rich repeats and immunoglobulin-like domains protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927863" }, "gene_names": [ { "name": "LRIG3", "type": "recommended", "evidence": [ { "id": "F1SKD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKD7" } ] }, { "name": "LRIG3", "type": "synonym", "evidence": [ { "id": "XP_001927863", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927863" } ] } ], "protein_names": [ { "name": "Leucine rich repeats and immunoglobulin like domains 3", "type": "synonym", "evidence": [ { "id": "F1SKD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKD7/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeats and immunoglobulin-like domains protein 3", "type": "synonym", "evidence": [ { "id": "XP_001927863", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927863" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKD7", "url": "https://www.uniprot.org/uniprotkb/F1SKD7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRIG3", "url": "https://www.uniprot.org/uniprotkb/F1SKD7", "locus": { "chromosome": "5", "start_pos": 24066623, "end_pos": 24117970, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000455", "url": "https://www.ensembl.org/id/ENSSSCG00000000455" } ] } } ], "crossref": [ { "id": "F1SKD7", "url": "https://alphafold.ebi.ac.uk/entry/F1SKD7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000455", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000455", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05763", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05763", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155928", "url": "https://www.ncbi.nlm.nih.gov/gene/100155928", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155928", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155928", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WIIEDQS", "url": "https://omabrowser.org/oma/group/WIIEDQS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKD7", "url": "https://www.orthodb.org/?gene=F1SKD7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45842", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45842", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45842:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45842:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13927", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13927", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927863", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927863", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKD7", "url": "https://www.uniprot.org/uniprotkb/F1SKD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKD7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAPRLCAPAAALGLLLCTVLGRADPTEGGSHPALGPPSGVAPERQCPAPCRCLGDLLDCSHQQLARLPEPLPSWVARLDLSHNRLSFIKASSMSHLHSLREVKLNNNELETIPNLGPVSANIILLSLAGNKIVEILPEHLRQFQSLETLDLSGNNISELKTALPPLQLKYLYINSNRVTSMEPGYFDNLANTLLVLKLNRNRITALPPKMFKLPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEILQLDHNNLTEITKGWLYGLLMLQELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNTLHIGNNKVSYIADCAFRGLSSLKTLDLKNNEISWTIEDMNGAFSGLDKLRRLILQGNRIRSITKKAFTGLDALEHLDLSDNAIMSLQGNAFAQMKKLQQLHLNTSSLLCDCQLKWLPQWVAENNFQSFINASCAHPQLLKGRSIFAVSPDGFVCDDFPKPQITVQPETQSAIKGSNLSFICSAASSSDSPMTFAWKKDNELLHDAEMENYAHLRAQGGEVMEYTTILRLRNVEFASEGKYQCVISNHFGSSYSVKAKLTVNMLPSFTKTPMDLTIRAGAMARLECAALGHPAPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSISANATLTVLETPSFLRPLLDRTVTKGETAVLQCIAGGSPPPRLNWTKDDSPLVVTERHFFAAGNQLLIIVDSDVSDAGKYTCEMSNTLGTERGHVRLSVIPTPTCDSPQMTASSLDDDGWATVGIVIIAVVCCVVGTSLVWVVIIYHTRRRNEDCSITNTDETNLPADIPSYLSSQGTLADRQDGYVSSESGSHHQFVTSSGGGFFLPQHDSNGTCHIDNSSEADVEAVTDPFLCPFLGPSGPVYLKGSVYGSDPFEACHSGCGPDPRTALMDHYEPSLVKKKECCPCPHPAEESCEQRVSDTGWPAHQRKVLSSSHSQHEGPGMNGSCLNKSPADFSPSPEAASVTLSNSFMGTFGKPLRRPHLDAFSSSGQASDCQPRAFHLKARSSPNLDCESEEDGKERTDFQQENHTYTYKQSLENHRTSNFQSYDLDT", "length": 1119, "header": "tr|F1SKD7-1|F1SKD7_PIG Isoform 1 of Leucine rich repeats and immunoglobulin like domains 3 OS=Sus scrofa OX=9823 GN=LRIG3 PE=4 SV=4 CANONICAL=F1SKD7-1" }, "isoforms": [ { "isoform_ac": "F1SKD7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKD7/entry#F1SKD7-1", "sequence": { "sequence": "MGAPRLCAPAAALGLLLCTVLGRADPTEGGSHPALGPPSGVAPERQCPAPCRCLGDLLDCSHQQLARLPEPLPSWVARLDLSHNRLSFIKASSMSHLHSLREVKLNNNELETIPNLGPVSANIILLSLAGNKIVEILPEHLRQFQSLETLDLSGNNISELKTALPPLQLKYLYINSNRVTSMEPGYFDNLANTLLVLKLNRNRITALPPKMFKLPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEILQLDHNNLTEITKGWLYGLLMLQELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNTLHIGNNKVSYIADCAFRGLSSLKTLDLKNNEISWTIEDMNGAFSGLDKLRRLILQGNRIRSITKKAFTGLDALEHLDLSDNAIMSLQGNAFAQMKKLQQLHLNTSSLLCDCQLKWLPQWVAENNFQSFINASCAHPQLLKGRSIFAVSPDGFVCDDFPKPQITVQPETQSAIKGSNLSFICSAASSSDSPMTFAWKKDNELLHDAEMENYAHLRAQGGEVMEYTTILRLRNVEFASEGKYQCVISNHFGSSYSVKAKLTVNMLPSFTKTPMDLTIRAGAMARLECAALGHPAPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSISANATLTVLETPSFLRPLLDRTVTKGETAVLQCIAGGSPPPRLNWTKDDSPLVVTERHFFAAGNQLLIIVDSDVSDAGKYTCEMSNTLGTERGHVRLSVIPTPTCDSPQMTASSLDDDGWATVGIVIIAVVCCVVGTSLVWVVIIYHTRRRNEDCSITNTDETNLPADIPSYLSSQGTLADRQDGYVSSESGSHHQFVTSSGGGFFLPQHDSNGTCHIDNSSEADVEAVTDPFLCPFLGPSGPVYLKGSVYGSDPFEACHSGCGPDPRTALMDHYEPSLVKKKECCPCPHPAEESCEQRVSDTGWPAHQRKVLSSSHSQHEGPGMNGSCLNKSPADFSPSPEAASVTLSNSFMGTFGKPLRRPHLDAFSSSGQASDCQPRAFHLKARSSPNLDCESEEDGKERTDFQQENHTYTYKQSLENHRTSNFQSYDLDT", "length": 1119, "header": "tr|F1SKD7-1|F1SKD7_PIG Isoform 1 of Leucine rich repeats and immunoglobulin like domains 3 OS=Sus scrofa OX=9823 GN=LRIG3 PE=4 SV=4 CANONICAL=F1SKD7-1" }, "locus": { "chromosome": "5", "start_pos": 24117672, "end_pos": 24067049, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000491.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000491.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000484.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000484.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKD7", "url": "https://www.uniprot.org/uniprotkb/F1SKD7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155928", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155928", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A1ZAB1-1", "protein_name": "Lambik", "gene_name": "lbk", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MHVSAIKGRHPTRESNDDSSMVISNYRICDIKTSGNGKYLMSWSRRRRRNNNNNNNSSSNNNNAASESRSNDNCNYSTTNDFNKINKLLLITYMLLITAATICQSAAQSPSSSNGNGVGGSGSTGGSPLSALLKSGGASYNQQLPQQQLFAMLTRNGGGSSGPRSSGGNRGYTSARQHFMALSEDYSDADVDEEDMAALHYPLSASHPPAGVQGSSSSSGISIQSGSLETNGFVADDGGQYEHAQKALEAAAAAAKASNKYNIDCPKDCKCLNVLFDCDKLHLERVPVLPSYVQTLHLANNKLNDTTVLEIRNLLNLTKVSLKRNLLEVIPKFIGLSGLKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELNSFPKSNNLVHLILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIRVFKNLNQLKKLALNFNQLEINWSTFRGLESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQISSLSRQGLFNLTKLRHLNLSFNAISRIEVDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKNLEELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNALASIQVNAFEHMLRLNKLVFKSLNFICDCDLVWFQQWLKNRFPQQAEHAVCGYPEHLLDRHLKSLSSSELVCVDSPKPRVEQEPDDMLAVNAANITLECIASSPTAASLAAADELKIKWRHDNQHVQERPAVHDGASTETQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQCVVSNAFGTTYAQKFKISIGIHPTFLQVPSNLTLDAGEMARLVCSASGDPTPEIALQKFGGSEFPAATERRLQVIREENAFLITNAKPSDSGIYTCTALSAAGEIKVNATLVVNDKPQPSIPLVHQEVVVGRTCVLQCLSETANADFELEHPHREWFKENKPIHISPTAPDGDRYYFSNNKELLVILNAQSNDAGHFRCEITDNSRTFTLQSELVVVKENLNWVVLLVGIITVTVICVVVDCCIIWCTLRYQKKKLRMSLAAERHSTQLRPRSLADLGCSYDEANHRRLTVMSTPPSEQRCLEQGLTLSYLRQTDLEAQQDHLSSKDSGTGSDAAVKRTLDDFEVAMPSHKHHTDDEEEEEVEEVYEENEPPYIKHTYEVNYAEPEQHLFLQNNNHNYDGGGIGVAGGVNKMVPNALLRKCSAGASGSNYSSIQQCTTVDI", "length": 1252 }, "evidence": [ { "id": "F1SKD7", "url": "https://omabrowser.org/oma/group/F1SKD7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "G3V8Y2-1", "protein_name": "Leucine-rich repeats and immunoglobulin-like domains 3", "gene_name": "Lrig3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAPGLRAAAAALGLLLCAGLGRAGPAGSGGHGAPGQLSDEATRRPCPAACHCLGDLLDCSRRRLIRLPDPLPAWVTRLDLSHNRLSFIQASSLSHLQSLQEVKLNNNELETIPNLGPVSANIRQLSLAGNAIDKILPEQLEAFQSLETLDLSNNNISELRTAFPPLQLKYLYINSNRVTSMEPGYFDNLGSTLLVLKLNRNRISAIPPKMFKLPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEILQLDHNNLTEITKGWLYGLLMLRELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNALHVGNNKVSYIADCAFRGLSSLKTLDLRNNEISWTIEDMNGAFSGLDKLRQLILQGNRIRSITKKAFAGLDTLEHLDLSGNAIMSLQNNAFSQMKKLQQLHLNTSSLLCDCQLKWLPQWVAENNFQSFVNASCAHPQPLKGRSIFTVSPDGFVCDDFPKPQITVQPETQSAIKGSDVSFTCSAASSSDSPMTFAWKKDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFASEGRYQCVISNHFGSSYSVKARLTINMLPSFTKTPMDLTIRAGAMARLECAAVGHPAPQIAWQKDGGIDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSVSANATLTVLETPSFLRPLLDRTVTKGETAVLQCIAGGSPPPRLNWTKDDSPLVVTERHFFAAGNQLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSVIPTPTCDSPHMTAPSLDGDGWATVGVVIIAVVCCVVGTSLVWVVIIYHTRRRNEDCSITNTDETNLPADIPSYLSSQGTLADRQDGYISSENGSHHQFVTSSGGGFFLPQHDSAGTCHFDDSSEADVEAAPDPFLCPFVSSSGPVYLKGNLYGPDPFEVYLPGCSSDPRIALMDHCESSYTKKDCFSCAHPSEEPCERSLKSIPWPHSRKLMNSAFSQNEGPAVQTLRLNKSVDFSTSPEPGSATSSNSFMGTFGKPLRRPQLDALSSFAQPPDCQPRPCHGKSLSPPELDSESEEDEKERTDFREENHRCTYQQILHSYRTPDRQPCDSDT", "length": 1116 }, "evidence": [ { "id": "F1SKD7", "url": "https://omabrowser.org/oma/group/F1SKD7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P1C6-1", "protein_name": "Leucine-rich repeats and immunoglobulin-like domains protein 3", "gene_name": "Lrig3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGAPGLRAATAALGLLLCAGLGRAGPAGSGGHGAPGQLLDDDAQRPCPAACHCLGDLLDCSRRRLVRLPDPLPAWVTRLDLSHNRLSFIQTSSLSHLQSLQEVKLNNNELETIPNLGSISANIRQLSLAGNAIDKILPEQLEAFQSLETLDLSNNNISELRTAFPPLQLKYLYINNNRVSSMEPGYFDNLASTLLVLKLNRNRISAIPPKMFKLPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEVLQLDHNNLTEITKGWLYGLLMLRELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNALHIGNNKVSYIADCAFRGLTSLKTLDLRNNEISWTIEDMSGAFSGLDRLRQLILQGNRIRSITKKAFAGLDTLEHLDLSGNAIMSLQSNAFSQMKKLQQLHLNTSSLLCDCQLRWLPQWVAENNFQSFVNASCAHPQLLKGRSIFTVSPDGFVCDDFPKPQITVQPETQSAIKGSDVSFTCSAASSSDSPMTFAWKKDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGKYQCVISNHFGSSYSVKAKLTINMLPSFTKTPMDLTIRAGAMARLECAAVGHPAPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSVSANATLTVLETPSFLRPLLDRTVTKGETAVLQCIAGGSPPPRLNWTKDDSPLVVTERHFFAAGNQLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSVIPTPTCDSPHMTAPSLDGDGWATVGVVIIAVVCCVVGTSLVWVVIIYHTRRRNEDCSITNTDETNLPADIPSYLSSQGTLADRQDGYISSESGSHHQFVTSSGGGFFLPQHDGAGTCHFDDSSEADVEAASDPFLCPFVGSTGPVYLQGNLYSPDPFEVYLPGCSSDPRTALMDHCESSYVKQDRFSCARPSEEPCERSLKSIPWPHSRKLTDSTYPPNEGHTVQTLCLNKSSVDFSTGPEPGSATSSNSFMGTFGKPLRRPHLDAFSSSAQPPDCQPRPCHGKSLSSPELDSESEENDKERTDFREENHRCTYQQIFHTYRTPDCQPCDSDT", "length": 1117 }, "evidence": [ { "id": "F1SKD7", "url": "https://omabrowser.org/oma/group/F1SKD7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6UXM1-1", "protein_name": "Leucine-rich repeats and immunoglobulin-like domains protein 3", "gene_name": "LRIG3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAPSLRARAAGLGLLLCAVLGRAGRSDSGGRGELGQPSGVAAERPCPTTCRCLGDLLDCSRKRLARLPEPLPSWVARLDLSHNRLSFIKASSMSHLQSLREVKLNNNELETIPNLGPVSANITLLSLAGNRIVEILPEHLKEFQSLETLDLSSNNISELQTAFPALQLKYLYLNSNRVTSMEPGYFDNLANTLLVLKLNRNRISAIPPKMFKLPQLQHLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEILQLDHNNLTEITKGWLYGLLMLQELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGLSLLNTLHIGNNRVSYIADCAFRGLSSLKTLDLKNNEISWTIEDMNGAFSGLDKLRRLILQGNRIRSITKKAFTGLDALEHLDLSDNAIMSLQGNAFSQMKKLQQLHLNTSSLLCDCQLKWLPQWVAENNFQSFVNASCAHPQLLKGRSIFAVSPDGFVCDDFPKPQITVQPETQSAIKGSNLSFICSAASSSDSPMTFAWKKDNELLHDAEMENYAHLRAQGGEVMEYTTILRLREVEFASEGKYQCVISNHFGSSYSVKAKLTVNMLPSFTKTPMDLTIRAGAMARLECAAVGHPAPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSAGSISANATLTVLETPSFLRPLLDRTVTKGETAVLQCIAGGSPPPKLNWTKDDSPLVVTERHFFAAGNQLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSVIPTPTCDSPQMTAPSLDDDGWATVGVVIIAVVCCVVGTSLVWVVIIYHTRRRNEDCSITNTDETNLPADIPSYLSSQGTLADRQDGYVSSESGSHHQFVTSSGAGFFLPQHDSSGTCHIDNSSEADVEAATDLFLCPFLGSTGPMYLKGNVYGSDPFETYHTGCSPDPRTVLMDHYEPSYIKKKECYPCSHPSEESCERSFSNISWPSHVRKLLNTSYSHNEGPGMKNLCLNKSSLDFSANPEPASVASSNSFMGTFGKALRRPHLDAYSSFGQPSDCQPRAFYLKAHSSPDLDSGSEEDGKERTDFQEENHICTFKQTLENYRTPNFQSYDLDT", "length": 1119 }, "evidence": [ { "id": "F1SKD7", "url": "https://omabrowser.org/oma/group/F1SKD7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SKD7", "url": "https://www.uniprot.org/uniprotkb/F1SKD7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "sensory perception of sound", "id": "GO:0007605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007605", "evidence": [ { "database": "UniProtKB", "id": "F1SKD7", "url": "https://www.uniprot.org/uniprotkb/F1SKD7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1SKD7", "url": "https://www.uniprot.org/uniprotkb/F1SKD7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1011, "end_pos": 1013, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1016, "end_pos": 1018, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1095, "end_pos": 1097, "annotation": "n_glycosylation_sequon" }, { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 442, "end_pos": 444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 515, "end_pos": 517, "annotation": "n_glycosylation_sequon" }, { "start_pos": 688, "end_pos": 690, "annotation": "n_glycosylation_sequon" }, { "start_pos": 729, "end_pos": 731, "annotation": "n_glycosylation_sequon" }, { "start_pos": 898, "end_pos": 900, "annotation": "n_glycosylation_sequon" }, { "start_pos": 905, "end_pos": 907, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKD7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1119, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKD7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKD7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKD7" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 499, "end_pos": 598, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1011, "end_pos": 1013 }, { "start_pos": 1016, "end_pos": 1018 }, { "start_pos": 1095, "end_pos": 1097 }, { "start_pos": 156, "end_pos": 158 }, { "start_pos": 274, "end_pos": 276 }, { "start_pos": 442, "end_pos": 444 }, { "start_pos": 469, "end_pos": 471 }, { "start_pos": 515, "end_pos": 517 }, { "start_pos": 688, "end_pos": 690 }, { "start_pos": 729, "end_pos": 731 }, { "start_pos": 898, "end_pos": 900 }, { "start_pos": 905, "end_pos": 907 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKD9-1", "uniprot_ac": "F1SKD9", "uniprot_id": "F1SKD9_PIG", "mass": { "chemical_mass": 28001.0, "monoisotopic_mass": 28001.0 }, "refseq": { "ac": "XP_003481692", "name": "mitochondrial inner membrane protease ATP23 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481692" }, "gene_names": [ { "name": "ATP23", "type": "recommended", "evidence": [ { "id": "F1SKD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ] }, { "name": "ATP23", "type": "synonym", "evidence": [ { "id": "XP_003481692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481692" } ] } ], "protein_names": [ { "name": "Mitochondrial inner membrane protease ATP23", "type": "recommended", "evidence": [ { "id": "F1SKD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKD9/entry#names_and_taxonomy" } ] }, { "name": "3.4.24.-", "type": "synonym", "evidence": [ { "id": "F1SKD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKD9/entry#names_and_taxonomy" } ] }, { "name": "mitochondrial inner membrane protease ATP23 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003481692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481692" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATP23", "url": "https://www.uniprot.org/uniprotkb/F1SKD9", "locus": { "chromosome": "5", "start_pos": 23276036, "end_pos": 23233895, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000453", "url": "https://www.ensembl.org/id/ENSSSCG00000000453" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000453", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000453", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100737094", "url": "https://www.ncbi.nlm.nih.gov/gene/100737094", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100737094", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737094", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KRHHQTC", "url": "https://omabrowser.org/oma/group/KRHHQTC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKD9", "url": "https://www.orthodb.org/?gene=F1SKD9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21711", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21711", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21711:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21711:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09768", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09768", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481692", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481692", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SKD9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAPDERGPGPAAREPLQQQHVGCQVFPERLAQGKPQQGFLSSFFTDNQKCQLMLLKTLETNPYVKLLLDAMKHSGCAVSKERHFSCEDCNGNVSGGFDASVSQIVLCQNNIRNQAHMNRVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLLNEIFRLHFGLKQHHQTCVRDRAILSILAVRNISREVAQKAVDEVFESCFNDHEPFGRIPHNQTYARYAHRDFQNRDRYYSNI", "length": 246, "header": "tr|F1SKD9-1|F1SKD9_PIG Isoform 1 of Mitochondrial inner membrane protease ATP23 OS=Sus scrofa OX=9823 GN=ATP23 PE=1 SV=3 CANONICAL=F1SKD9-1" }, "isoforms": [ { "isoform_ac": "F1SKD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SKD9/entry#F1SKD9-1", "sequence": { "sequence": "MAGAPDERGPGPAAREPLQQQHVGCQVFPERLAQGKPQQGFLSSFFTDNQKCQLMLLKTLETNPYVKLLLDAMKHSGCAVSKERHFSCEDCNGNVSGGFDASVSQIVLCQNNIRNQAHMNRVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLLNEIFRLHFGLKQHHQTCVRDRAILSILAVRNISREVAQKAVDEVFESCFNDHEPFGRIPHNQTYARYAHRDFQNRDRYYSNI", "length": 246, "header": "tr|F1SKD9-1|F1SKD9_PIG Isoform 1 of Mitochondrial inner membrane protease ATP23 OS=Sus scrofa OX=9823 GN=ATP23 PE=1 SV=3 CANONICAL=F1SKD9-1" }, "locus": { "chromosome": "5", "start_pos": 23275603, "end_pos": 23234087, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000489.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000489.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000482.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000482.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100737094", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100737094", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A4IGF3-1", "protein_name": "Mitochondrial inner membrane protease ATP23 homolog", "gene_name": "atp23", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAQSGAKAADLSREPPGEQKPSPSSRQNEEDLGYNLYPERGSRLKKSTVEESLFTFKHKCQLMLQFAMDTSPYAKLLLGAMKSSGCTVFKDRHFSCEDCDGTVSGGFDAATSQIVLCQNNIHQQAHMNRVVTHELIHAFDHCRAQVDWFSNYRHLACSEIRAANLSGDCSFINEFSRFNFGLRKHHQECVRGRALRSILAVRRVSREEAERVVDEVFDSCFNDHAPFGRIPHSKKDAKFAHRDFENRDRYYANL", "length": 254 }, "evidence": [ { "id": "F1SKD9", "url": "https://omabrowser.org/oma/group/F1SKD9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1MY08-1", "protein_name": "Mitochondrial inner membrane protease ATP23", "gene_name": "ATP23", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAEAPDEREPGSVAGEQLQQQHVGCQVFSERLAQGKPQQGFLSSFFTNNQKCQLMLLKTLATNPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDSSVSQIVLCQNNIRNQAHMNRVVTHELIHAFDHCRAHVNWFTNVRHLACSEVRAANLSGDCSFLNEIFRLHFGLKQHHQTCVRDRAIRSILAVRNINKEVAQKAVDEVFESCFNDHEPFGRIPHNKTYARYAHRDFQNRDRYYSNI", "length": 246 }, "evidence": [ { "id": "F1SKD9", "url": "https://omabrowser.org/oma/group/F1SKD9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M0R4I7-1", "protein_name": "Mitochondrial inner membrane protease ATP23", "gene_name": "Atp23", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRETGGEGVRGRWLRCGRELHGQHWWATKHRPPRPAHHHAHPKARPELLVGASPRGPPVRLRAAEAATPRRPGRAGRRRLAGRMAGAPGGGEPGPEAGEPLLQRSDSGQGSSEPPAQGKSQQGFLSSLFTRDQSCPLMLLKTLETNPYVKLLLDAMKHSGWCSGGGCSRLSVLSSAVNRGRHFSCEVCDGNVSGGFDASTSQIVLCENNIRNQAHMGRVVTHELIHAFDHCRAHVHWFTNVHHLACSEIRAASLSGDCSLVNELLRLRFGLKQHHQTCVRDRAVLSILAVRNISREEAQKAVDEVFQACFNDREPFGRIPHNKTYARYAHRDFQNRGRYYSNI", "length": 343 }, "evidence": [ { "id": "F1SKD9", "url": "https://omabrowser.org/oma/group/F1SKD9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CWQ3-1", "protein_name": "Mitochondrial inner membrane protease ATP23 homolog", "gene_name": "Atp23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGAPGGGELGPAAGEPLLQRPDSGQGSPEPPAHGKPQQGFLSSLFTRDQSCPLMLQKTLDTNPYVKLLLDAMKHSGCAVNRGRHFSCEVCDGNVSGGFDASTSQIVLCENNIRNQAHMGRVVTHELIHAFDHCRAHVHWFTNIRHLACSEIRAASLSGDCSLVNELFRLRFGLKQHHQIETSCVSRPAMNSQSCLGLVSA", "length": 201 }, "evidence": [ { "id": "F1SKD9", "url": "https://omabrowser.org/oma/group/F1SKD9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y6H3-1", "protein_name": "Mitochondrial inner membrane protease ATP23 homolog", "gene_name": "ATP23", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGAPDERRRGPAAGEQLQQQHVSCQVFPERLAQGNPQQGFFSSFFTSNQKCQLRLLKTLETNPYVKLLLDAMKHSGCAVNKDRHFSCEDCNGNVSGGFDASTSQIVLCQNNIHNQAHMNRVVTHELIHAFDHCRAHVDWFTNIRHLACSEVRAANLSGDCSLVNEIFRLHFGLKQHHQTCVRDRATLSILAVRNISKEVAKKAVDEVFESCFNDHEPFGRIPHNKTYARYAHRDFENRDRYYSNI", "length": 246 }, "evidence": [ { "id": "F1SKD9", "url": "https://omabrowser.org/oma/group/F1SKD9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "pmid": "" }, { "name": "cell junction", "id": "GO:0030054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030054", "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial protein processing", "id": "GO:0034982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034982", "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "pmid": "" }, { "name": "mitochondrial proton-transporting ATP synthase complex assembly", "id": "GO:0033615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033615", "evidence": [ { "database": "UniProtKB", "id": "F1SKD9", "url": "https://www.uniprot.org/uniprotkb/F1SKD9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 156, "end_pos": 158 }, { "start_pos": 195, "end_pos": 197 }, { "start_pos": 225, "end_pos": 227 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKE5-1", "uniprot_ac": "F1SKE5", "uniprot_id": "F1SKE5_PIG", "mass": { "chemical_mass": 42737.0, "monoisotopic_mass": 42737.0 }, "refseq": { "ac": "XP_020925237", "name": "progestin and adipoQ receptor family member 9 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925237" }, "gene_names": [ { "name": "PAQR9", "type": "recommended", "evidence": [ { "id": "F1SKE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE5" } ] }, { "name": "PAQR9", "type": "synonym", "evidence": [ { "id": "XP_020925237", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925237" } ] } ], "protein_names": [ { "name": "Progestin and adipoQ receptor family member 9", "type": "synonym", "evidence": [ { "id": "F1SKE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE5/entry#names_and_taxonomy" } ] }, { "name": "progestin and adipoQ receptor family member 9 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020925237", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925237" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKE5", "url": "https://www.uniprot.org/uniprotkb/F1SKE5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PAQR9", "url": "https://www.uniprot.org/uniprotkb/F1SKE5", "locus": { "chromosome": "13", "start_pos": 83667736, "end_pos": 83668869, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000060874", "url": "https://www.ensembl.org/id/ENSSSCG00000060874" } ] } } ], "crossref": [ { "id": "F1SKE5", "url": "https://alphafold.ebi.ac.uk/entry/F1SKE5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011683", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011683", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516760", "url": "https://www.ncbi.nlm.nih.gov/gene/100516760", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR20855", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20855", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20855:SF143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20855:SF143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03006", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03006", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020925237", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925237", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKE5", "url": "https://www.uniprot.org/uniprotkb/F1SKE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKE5-1", "url": "https://www.uniprot.org/uniprotkb/F1SKE5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRRLQPRSAGTKGPPGMTAAASEAASRSHPSASGDPAASAKPLLRWDEVPDDFVECFILSGYRRLPCTAQECLASVLKPTNETLNFWTHFIPLLLFLSKFCRLFFLSGRDVPFHHPWLLPLWCYASGVLLTFAMSCTAHVFSCLSLRLRAAFFYLDYASISYYGFGSTVAYYYYLLPGLSLLDARVMTPYVQQRLGWHVDCTGLIAAYRALVLPVAFVLAVACTVACCKSRTDWCSYPFALRTFVFVMPLSMACPIMLESWLFDLRGENPTLFVHFYRRYFWLVVAAFFNVSKIPERIQPGLFDIIGHSHQLFHIFTFLSIYDQVYYVEEGLRQFLKAPPDAPTFCGTVGYMLLLVICLGLVIKKFLNNSEFCSKK", "length": 377, "header": "tr|F1SKE5-1|F1SKE5_PIG Isoform 1 of Progestin and adipoQ receptor family member 9 OS=Sus scrofa OX=9823 GN=PAQR9 PE=3 SV=4 CANONICAL=F1SKE5-1" }, "isoforms": [ { "isoform_ac": "F1SKE5-1", "url": "https://www.uniprot.org/uniprotkb/F1SKE5/entry#F1SKE5-1", "sequence": { "sequence": "MPRRLQPRSAGTKGPPGMTAAASEAASRSHPSASGDPAASAKPLLRWDEVPDDFVECFILSGYRRLPCTAQECLASVLKPTNETLNFWTHFIPLLLFLSKFCRLFFLSGRDVPFHHPWLLPLWCYASGVLLTFAMSCTAHVFSCLSLRLRAAFFYLDYASISYYGFGSTVAYYYYLLPGLSLLDARVMTPYVQQRLGWHVDCTGLIAAYRALVLPVAFVLAVACTVACCKSRTDWCSYPFALRTFVFVMPLSMACPIMLESWLFDLRGENPTLFVHFYRRYFWLVVAAFFNVSKIPERIQPGLFDIIGHSHQLFHIFTFLSIYDQVYYVEEGLRQFLKAPPDAPTFCGTVGYMLLLVICLGLVIKKFLNNSEFCSKK", "length": 377, "header": "tr|F1SKE5-1|F1SKE5_PIG Isoform 1 of Progestin and adipoQ receptor family member 9 OS=Sus scrofa OX=9823 GN=PAQR9 PE=3 SV=4 CANONICAL=F1SKE5-1" }, "locus": { "chromosome": "13", "start_pos": 83668869, "end_pos": 83667739, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012793.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012793.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012456.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012456.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKE5", "url": "https://www.uniprot.org/uniprotkb/F1SKE5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SKE5", "url": "https://www.uniprot.org/uniprotkb/F1SKE5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SKE5", "url": "https://www.uniprot.org/uniprotkb/F1SKE5" } ], "pmid": "" }, { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F1SKE5", "url": "https://www.uniprot.org/uniprotkb/F1SKE5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKE5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 377, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKE5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKE5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "F1SKE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE5#function" }, { "id": "F1SKE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE5" }, { "id": "PIRSR604254-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR604254-1" } ], "binding_site_uniprot": 140, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 140, "end_pos": 140, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE5#function" }, { "id": "F1SKE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE5" }, { "id": "PIRSR604254-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR604254-1" } ], "binding_site_uniprot": 311, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 311, "end_pos": 311, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE5#function" }, { "id": "F1SKE5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE5" }, { "id": "PIRSR604254-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR604254-1" } ], "binding_site_uniprot": 315, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 315, "end_pos": 315, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 291, "end_pos": 293 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 82, "end_pos": 84 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKE7-1", "uniprot_ac": "F1SKE7", "uniprot_id": "F1SKE7_PIG", "mass": { "chemical_mass": 45511.0, "monoisotopic_mass": 45511.0 }, "refseq": { "ac": "XP_005669974", "name": "procollagen C-endopeptidase enhancer 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669974" }, "gene_names": [ { "name": "PCOLCE2", "type": "recommended", "evidence": [ { "id": "F1SKE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE7" } ] }, { "name": "PCOLCE2", "type": "synonym", "evidence": [ { "id": "XP_005669974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669974" } ] } ], "protein_names": [ { "name": "Procollagen C-endopeptidase enhancer 2", "type": "recommended", "evidence": [ { "id": "F1SKE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE7/entry#names_and_taxonomy" } ] }, { "name": "Procollagen COOH-terminal proteinase enhancer 2", "type": "synonym", "evidence": [ { "id": "F1SKE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE7/entry#names_and_taxonomy" } ] }, { "name": "procollagen C-endopeptidase enhancer 2", "type": "synonym", "evidence": [ { "id": "XP_005669974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669974" } ] } ], "function": [ { "annotation": "Binds to the C-terminal propeptide of types I and II procollagens and may enhance the cleavage of that propeptide by BMP1.", "evidence": [ { "database": "UniProtKB", "id": "F1SKE7", "url": "https://www.uniprot.org/uniprotkb/F1SKE7#function" }, { "database": "UniProtKB", "id": "ARBA00056872", "url": "https://www.uniprot.org/uniprotkb/ARBA00056872#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKE7", "url": "https://www.uniprot.org/uniprotkb/F1SKE7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PCOLCE2", "url": "https://www.uniprot.org/uniprotkb/F1SKE7", "locus": { "chromosome": "13", "start_pos": 83507611, "end_pos": 83592764, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011683", "url": "https://www.ensembl.org/id/ENSSSCG00000011683" } ] } } ], "crossref": [ { "id": "F1SKE7", "url": "https://alphafold.ebi.ac.uk/entry/F1SKE7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011683", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011683", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00041", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00041", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03576", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03576", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156529", "url": "https://www.ncbi.nlm.nih.gov/gene/100156529", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001134", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001134", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035814", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035814", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156529", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156529", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DVYNGHV", "url": "https://omabrowser.org/oma/group/DVYNGHV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKE7", "url": "https://www.orthodb.org/?gene=F1SKE7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24251", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24251", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24251:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24251:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005669974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669974", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKE7", "url": "https://www.uniprot.org/uniprotkb/F1SKE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKE7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKE7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGAGAWAPLCLLLAAAAQPSQPQPPERPVFTCGGILTGESGFIGSEGFPGVYPPNSKCTWKITVPEGKVVVLNFRFIDLESDNLCRYDFVDVYNGHANGQRIGRFCGTFRPGALVSSGNKMMVQMISDANTAGNGFMAMFTAAEPNERGDRYCGGRLERPSGSFKTPNWPDRDYPAGVACVWHIVAPKNQLIELEFEKFDVERDNYCRYDYVAVFNGGEINDAERIGKYCGDSPPAPIVSERNELLIQFLSDLSLTADGFIGHYKFRPKKLPTTIAPPVTTTYPVTTSVKPTVALCQQKCKRTGTPESNYCSSNFVLAGTVITTIPRGGSLHATISIINIYKEGNLAVQQAGKNMSAKVIVVCKQCPLLRRGLNYIIMGQVGEDGRGRIMPNSFIMMFKTKNQKLLNALKNKQC", "length": 415, "header": "tr|F1SKE7-1|F1SKE7_PIG Isoform 1 of Procollagen C-endopeptidase enhancer 2 OS=Sus scrofa OX=9823 GN=PCOLCE2 PE=4 SV=3 CANONICAL=F1SKE7-1" }, "isoforms": [ { "isoform_ac": "F1SKE7-1", "url": "https://www.uniprot.org/uniprotkb/F1SKE7/entry#F1SKE7-1", "sequence": { "sequence": "MRGAGAWAPLCLLLAAAAQPSQPQPPERPVFTCGGILTGESGFIGSEGFPGVYPPNSKCTWKITVPEGKVVVLNFRFIDLESDNLCRYDFVDVYNGHANGQRIGRFCGTFRPGALVSSGNKMMVQMISDANTAGNGFMAMFTAAEPNERGDRYCGGRLERPSGSFKTPNWPDRDYPAGVACVWHIVAPKNQLIELEFEKFDVERDNYCRYDYVAVFNGGEINDAERIGKYCGDSPPAPIVSERNELLIQFLSDLSLTADGFIGHYKFRPKKLPTTIAPPVTTTYPVTTSVKPTVALCQQKCKRTGTPESNYCSSNFVLAGTVITTIPRGGSLHATISIINIYKEGNLAVQQAGKNMSAKVIVVCKQCPLLRRGLNYIIMGQVGEDGRGRIMPNSFIMMFKTKNQKLLNALKNKQC", "length": 415, "header": "tr|F1SKE7-1|F1SKE7_PIG Isoform 1 of Procollagen C-endopeptidase enhancer 2 OS=Sus scrofa OX=9823 GN=PCOLCE2 PE=4 SV=3 CANONICAL=F1SKE7-1" }, "locus": { "chromosome": "13", "start_pos": 83592484, "end_pos": 83508067, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012791.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012791.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012454.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012454.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKE7", "url": "https://www.uniprot.org/uniprotkb/F1SKE7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156529", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156529", "resource": "KEGG Pathway" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YLY1-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPPAAPRPLPLLLPLLLLLPGARPAAQPPRPTFTCGGVVSGESGFIGSEGFPGVYPPNSKCTWKITVPEGKVVVLSFRYLDLESDNLCRYDFVDIYSGHANGQRIGRFCGTVKPGALVSSSNKMLVQMTSDANTAGNGFIAKFSAAEPHERGDQYCGGRLEKPSGSFQTPNWPERDYPAGVTCSWHIVAPKNQLIELKFEKFDVERDNYCRYDYVAVFNGGEINDAKRIGKYCGDSPPAPIVSEKNELFIQFLSDLSLTADGFIGHYKFRPKKLPTTTVPPTTTTVPATSIPKPTVALCQQKCKRSGTPESNYCSSNFVITGTVISTTTRAGSLHATISIINVYKEGNLAIQQAGKNMSAKIIVVCKQCPLLRRGLNYIIMGQVEEDGRGKIFPNSFVMSFKTKNQKILNSLKNKTCYN", "length": 419 }, "evidence": [ { "id": "F1SKE7", "url": "https://omabrowser.org/oma/group/F1SKE7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q8R4W6-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "Pcolce2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGGASACIPLCLLLATARMARPQTPERPVFTCGGILTGESGFIGSEGFPGMYPPNSKCTWKITVPEGKVVVLNFRFIDLENDNLCRYDFVDVYNGHANGQRIGRFCGTFRPGSLVASGNKMTVQMISDANTAGSGFMATYSAAAPDGKGDRYCGGRLEKPSGTFKTPNWPDRDYPVGVTCVWHIIAPKNQLIELKFEKFDVERDNYCRYDYVAVFNGGEVNDAKRIGKYCGDSPPVPIVSERNELLIQFLSDLSLTADGFIGHYKFRPKKFPTTTTTPVTTTLPVTTGLKPTVALCQQKCRRMGTLESNYCSSNFVLAGTVITTVTRGGSLHATVSIISIYREGNLAIQQAGKNMSVKLTVVCRQCPLLRRGLNYIIMGQVGEDGRGKIMPNSFVKMFKNKNQKPMNALKNKQC", "length": 414 }, "evidence": [ { "id": "F1SKE7", "url": "https://omabrowser.org/oma/group/F1SKE7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UKZ9-1", "protein_name": "Procollagen C-endopeptidase enhancer 2", "gene_name": "PCOLCE2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRGANAWAPLCLLLAAATQLSRQQSPERPVFTCGGILTGESGFIGSEGFPGVYPPNSKCTWKITVPEGKVVVLNFRFIDLESDNLCRYDFVDVYNGHANGQRIGRFCGTFRPGALVSSGNKMMVQMISDANTAGNGFMAMFSAAEPNERGDQYCGGLLDRPSGSFKTPNWPDRDYPAGVTCVWHIVAPKNQLIELKFEKFDVERDNYCRYDYVAVFNGGEVNDARRIGKYCGDSPPAPIVSERNELLIQFLSDLSLTADGFIGHYIFRPKKLPTTTEQPVTTTFPVTTGLKPTVALCQQKCRRTGTLEGNYCSSDFVLAGTVITTITRDGSLHATVSIINIYKEGNLAIQQAGKNMSARLTVVCKQCPLLRRGLNYIIMGQVGEDGRGKIMPNSFIMMFKTKNQKLLDALKNKQC", "length": 415 }, "evidence": [ { "id": "F1SKE7", "url": "https://omabrowser.org/oma/group/F1SKE7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SKE7", "url": "https://www.uniprot.org/uniprotkb/F1SKE7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "heparin binding", "id": "GO:0008201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008201", "evidence": [ { "database": "UniProtKB", "id": "F1SKE7", "url": "https://www.uniprot.org/uniprotkb/F1SKE7" } ], "pmid": "" }, { "name": "peptidase activator activity", "id": "GO:0016504", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016504", "evidence": [ { "database": "UniProtKB", "id": "F1SKE7", "url": "https://www.uniprot.org/uniprotkb/F1SKE7" } ], "pmid": "" }, { "name": "collagen binding", "id": "GO:0005518", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005518", "evidence": [ { "database": "UniProtKB", "id": "F1SKE7", "url": "https://www.uniprot.org/uniprotkb/F1SKE7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 355, "end_pos": 357, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKE7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 415, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKE7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKE7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE7" }, { "id": "PS01180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CUB", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 144, "start_aa": "Cys", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKE7" }, { "id": "PS50189", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50189" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NTR", "eco_id": "ECO_0000259", "start_pos": 297, "end_pos": 415, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 355, "end_pos": 357 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKG1-1", "uniprot_ac": "F1SKG1", "uniprot_id": "F1SKG1_PIG", "mass": { "chemical_mass": 38425.0, "monoisotopic_mass": 38425.0 }, "refseq": {}, "gene_names": [ { "name": "INHBE", "type": "recommended", "evidence": [ { "id": "F1SKG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" } ] } ], "protein_names": [ { "name": "Inhibin subunit beta E", "type": "synonym", "evidence": [ { "id": "F1SKG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKG1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Inhibins and activins inhibit and activate, respectively, the secretion of follitropin by the pituitary gland. Inhibins/activins are involved in regulating a number of diverse functions such as hypothalamic and pituitary hormone secretion, gonadal hormone secretion, germ cell development and maturation, erythroid differentiation, insulin secretion, nerve cell survival, embryonic axial development or bone growth, depending on their subunit composition. Inhibins appear to oppose the functions of activins.", "evidence": [ { "database": "UniProtKB", "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1#function" }, { "database": "UniProtKB", "id": "ARBA00002588", "url": "https://www.uniprot.org/uniprotkb/ARBA00002588#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "INHBE", "url": "https://www.uniprot.org/uniprotkb/F1SKG1", "locus": { "chromosome": "5", "start_pos": 22734083, "end_pos": 22732516, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000442", "url": "https://www.ensembl.org/id/ENSSSCG00000000442" } ] } } ], "crossref": [ { "id": "F1SKG1", "url": "https://alphafold.ebi.ac.uk/entry/F1SKG1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000442", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000442", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19406", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19406", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001318", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001318", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017948", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017948", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11848", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11848", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11848:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11848:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00019", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00019", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-209822", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209822", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKG1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLPDVQLWLVLLWALVWAQGEGSVCPSCGGPTLAPQAERALVLELAKQQILQGLHLSSRPRITHPPPQAALTRALRRLQRGSVGPAHGEEVISFAAITDSSTSTCGSTLTFHLSTPRSHHLYHARLWVHALPTLPGTLSLRIFRRGPRRRRRGSRVLLAEHQMTTPGWHALTLPSSGLRREESGVLKLQLDCRALEGNGTAALQPCQLLDTAGEQRPFLELKTRPKEPGAGRARRRTPTCEPEPLCCRRDHYVDFQELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVLSLLKANNPWPLGTSCCVPTARRSLSLLYLDRDGNVVKTDVPDMVVEACGCS", "length": 350, "header": "tr|F1SKG1-1|F1SKG1_PIG Isoform 1 of Inhibin subunit beta E OS=Sus scrofa OX=9823 GN=INHBE PE=3 SV=3 CANONICAL=F1SKG1-1" }, "isoforms": [ { "isoform_ac": "F1SKG1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1/entry#F1SKG1-1", "sequence": { "sequence": "MGLPDVQLWLVLLWALVWAQGEGSVCPSCGGPTLAPQAERALVLELAKQQILQGLHLSSRPRITHPPPQAALTRALRRLQRGSVGPAHGEEVISFAAITDSSTSTCGSTLTFHLSTPRSHHLYHARLWVHALPTLPGTLSLRIFRRGPRRRRRGSRVLLAEHQMTTPGWHALTLPSSGLRREESGVLKLQLDCRALEGNGTAALQPCQLLDTAGEQRPFLELKTRPKEPGAGRARRRTPTCEPEPLCCRRDHYVDFQELGWRDWILQPEGYQLNYCSGQCPPHLAGSPGIAASFHSAVLSLLKANNPWPLGTSCCVPTARRSLSLLYLDRDGNVVKTDVPDMVVEACGCS", "length": 350, "header": "tr|F1SKG1-1|F1SKG1_PIG Isoform 1 of Inhibin subunit beta E OS=Sus scrofa OX=9823 GN=INHBE PE=3 SV=3 CANONICAL=F1SKG1-1" }, "locus": { "chromosome": "5", "start_pos": 22734080, "end_pos": 22732798, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000477.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000477.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000470.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000470.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-209822", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-209822", "resource": "Reactome", "description": "Glycoprotein hormones" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "cytokine activity", "id": "GO:0005125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005125", "evidence": [ { "database": "UniProtKB", "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" } ], "pmid": "" }, { "name": "hormone activity", "id": "GO:0005179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005179", "evidence": [ { "database": "UniProtKB", "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" } ], "pmid": "" }, { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell surface receptor protein serine/threonine kinase signaling pathway", "id": "GO:0007178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007178", "evidence": [ { "database": "UniProtKB", "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" } ], "pmid": "" }, { "name": "negative regulation of adipose tissue development", "id": "GO:1904178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904178", "evidence": [ { "database": "UniProtKB", "id": "F1SKG1", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKG1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 350, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKG1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKG1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKG1" }, { "id": "PS51362", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51362" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TGF-beta family profile", "eco_id": "ECO_0000259", "start_pos": 233, "end_pos": 350, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 199, "end_pos": 201 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKI9-1", "uniprot_ac": "F1SKI9", "uniprot_id": "F1SKI9_PIG", "mass": { "chemical_mass": 56038.0, "monoisotopic_mass": 56038.0 }, "refseq": { "ac": "XP_003132246", "name": "transmembrane prolyl 4-hydroxylase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132246" }, "gene_names": [ { "name": "P4HTM", "type": "recommended", "evidence": [ { "id": "F1SKI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ] }, { "name": "WDR6", "type": "recommended", "evidence": [ { "id": "F1SKI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ] }, { "name": "P4HTM", "type": "synonym", "evidence": [ { "id": "XP_003132246", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132246" }, { "id": "F1SKI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ] } ], "protein_names": [ { "name": "Transmembrane prolyl 4-hydroxylase", "type": "recommended", "evidence": [ { "id": "F1SKI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKI9/entry#names_and_taxonomy" } ] }, { "name": "1.14.11.29", "type": "synonym", "evidence": [ { "id": "F1SKI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKI9/entry#names_and_taxonomy" } ] }, { "name": "Hypoxia-inducible factor prolyl hydroxylase 4", "type": "synonym", "evidence": [ { "id": "F1SKI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKI9/entry#names_and_taxonomy" } ] }, { "name": "transmembrane prolyl 4-hydroxylase", "type": "synonym", "evidence": [ { "id": "XP_003132246", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132246" } ] } ], "function": [ { "annotation": "Catalyzes the post-translational formation of 4-hydroxyproline in hypoxia-inducible factor (HIF) alpha proteins. Hydroxylates HIF1A at 'Pro-402' and 'Pro-564'. May function as a cellular oxygen sensor and, under normoxic conditions, may target HIF through the hydroxylation for proteasomal degradation via the von Hippel-Lindau ubiquitination complex.", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9#function" }, { "database": "UniProtKB", "id": "ARBA00056324", "url": "https://www.uniprot.org/uniprotkb/ARBA00056324#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "P4HTM", "url": "https://www.uniprot.org/uniprotkb/F1SKI9", "locus": { "chromosome": "13", "start_pos": 31642399, "end_pos": 31627225, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011368", "url": "https://www.ensembl.org/id/ENSSSCG00000011368" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011368", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011368", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000011369", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011369", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110255176", "url": "https://www.ncbi.nlm.nih.gov/gene/110255176", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255176", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255176", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MTQAQPC", "url": "https://omabrowser.org/oma/group/MTQAQPC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKI9", "url": "https://www.orthodb.org/?gene=F1SKI9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10869", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10869", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10869:SF246", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10869:SF246", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132246", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132246", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "48400", "url": "https://www.rhea-db.org/rhea/48400", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SKI8", "url": "https://www.uniprot.org/uniprotkb/F1SKI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKI8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKI8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKI9-1", "url": "https://www.uniprot.org/uniprotkb/F1SKI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAAAAGPRREDSSPQWTPPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLGNVLALLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDHFIRTLSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDLFQLLDQNHDGHLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSDMDLRDFHKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDIDLRDTRRHCDKGNLRVKPRQGTAVFWYNYLPDGQGWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPSRARQALFQQEMARLAREGGADSQPEWALDRAYRNARVEL", "length": 497, "header": "tr|F1SKI9-1|F1SKI9_PIG Isoform 1 of Transmembrane prolyl 4-hydroxylase OS=Sus scrofa OX=9823 GN=P4HTM PE=1 SV=3 CANONICAL=F1SKI9-1" }, "isoforms": [ { "isoform_ac": "F1SKI8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKI9/entry#F1SKI8-1", "sequence": { "sequence": "MAAAAAAAGPRREDSSPQWTPPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLGNVLALLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDHFIRTLSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDLFQLLDQNHDGHLQLRECLRPGEGVLSLQEFSDMDLRDFHKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDIDLRDTRRHCDKGNLRVKPRQGTAVFWYNYLPDGQGWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPSRARQALFQQEMARLAREGGADSQPEWALDRAYRNARVEL", "length": 471, "header": "tr|F1SKI8-1|F1SKI9_PIG Computationally mapped isoform of Transmembrane prolyl 4-hydroxylase OS=Sus scrofa OX=9823 GN=P4HTM PE=1 SV=3 CANONICAL=F1SKI9-1" }, "locus": { "chromosome": "13", "start_pos": 31642060, "end_pos": 31627266, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062590.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062590.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058016.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058016.2" } ] } }, { "isoform_ac": "F1SKI9-1", "url": "https://www.uniprot.org/uniprotkb/F1SKI9/entry#F1SKI9-1", "sequence": { "sequence": "MAAAAAAAGPRREDSSPQWTPPPREPVGAAAGLGDCEDAPVRPLGKPRGICSRAYFLVLMVFVHLYLGNVLALLLFVHYSNGDESSDPGPQRRTQSPGPAPTLAPLTRLEGIKVGHERKVQLVADRDHFIRTLSLKPLLFEVPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMGTMQISQLDLFQLLDQNHDGHLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSDMDLRDFHKYMRSHKAESSELVRNSYHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDIDLRDTRRHCDKGNLRVKPRQGTAVFWYNYLPDGQGWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPSRARQALFQQEMARLAREGGADSQPEWALDRAYRNARVEL", "length": 497, "header": "tr|F1SKI9-1|F1SKI9_PIG Isoform 1 of Transmembrane prolyl 4-hydroxylase OS=Sus scrofa OX=9823 GN=P4HTM PE=1 SV=3 CANONICAL=F1SKI9-1" }, "locus": { "chromosome": "13", "start_pos": 31642060, "end_pos": 31627266, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012446.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012446.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012121.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012121.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKI8", "url": "https://www.uniprot.org/uniprotkb/F1SKI8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255176", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255176", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZJG3-1", "protein_name": "Transmembrane prolyl 4-hydroxylase", "gene_name": "P4htm", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAVATVQRPVAETIEEASNLQWPLPPEHRPSGAATRPGDGEEAPVRPLCKPRGICSRAYFLVLMVFVHLYLGNVLALLLFVHYSNGDESTDPGPQRREQSPQPVPTLGPLTRLEGIKVGYERKVQVVAGRDHFIRTLSLKPLLFEIPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSAMRVSQLDLFQLLDQNHDGRLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSNMDLRDFHKYMRSHKAESSELVRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYPETVCSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDNVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHGGCLVTRGTKWIANNWINVDPSRARQALFQQEMARLAREGGADSQPEWALDRAYSDARAEL", "length": 503 }, "evidence": [ { "id": "F1SKI9", "url": "https://omabrowser.org/oma/group/F1SKI9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N3W9-1", "protein_name": "Transmembrane prolyl 4-hydroxylase", "gene_name": "P4HTM", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAAGPRPEAPSPQWPPRHHDSAEAAARLSDCEDAPVRPLCKPRGICSRAYFLVLMVFVHLYLGNVLALLLFVHYSNGDESSDPGPQRRAQGPGPAPTLAPLTRLEGIKVGHERKIQLVADRDHFIRTLSLKPLLFEIPGFLSDEECRLVIHLAQMKGLQRSQILPTEEYEEAMGTMQISLLDLFQLLDQNHDGRLQLREVLAQNRLGNGRWMTPETIQEMYSAIKADPDGDGVLSLQEFSNMDLRDFHKYMRSHRAESSQLVRNSHHTWLYQGEGAHHVMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDVDLRDTRRHCDKGNLRVKPRQGTAVFWYNYLPDGQGWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPSRARQALFQQEMARLAGEGGADSQPEWALDRAYRDTRVEL", "length": 494 }, "evidence": [ { "id": "F1SKI9", "url": "https://omabrowser.org/oma/group/F1SKI9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BG58-1", "protein_name": "Transmembrane prolyl 4-hydroxylase", "gene_name": "P4htm", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAVATVQRPEAETVEEASNLQWPLPPEHRPSGAATRPGDSEDAPVRPLCKPRGICSRAYFLVLMVFVHLYLGNVLALLLFVHYSNGDESTDPGPQRREQSPQPVPTLGPLTRLEGIKVGYERKVQVVAGRDHFIRTLSLKPLLFEIPGFLSDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSAMQVSQLDLFQLLDQNHDGRLQLREVLAQTRLGNGRWMTPENIQEMYSAIKADPDGDGVLSLQEFSNMDLRDFHKYMRSHKAESNELVRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVEFSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHGGCLVTRGTKWIANNWINVDPSRARQALFQQEMARLAREGGMDSQPEWALDRAYSDARVEL", "length": 503 }, "evidence": [ { "id": "F1SKI9", "url": "https://omabrowser.org/oma/group/F1SKI9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NXG6-1", "protein_name": "Transmembrane prolyl 4-hydroxylase", "gene_name": "P4HTM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAAAVTGQRPETAAAEEASRPQWAPPDHCQAQAAAGLGDGEDAPVRPLCKPRGICSRAYFLVLMVFVHLYLGNVLALLLFVHYSNGDESSDPGPQHRAQGPGPEPTLGPLTRLEGIKVGHERKVQLVTDRDHFIRTLSLKPLLFEIPGFLTDEECRLIIHLAQMKGLQRSQILPTEEYEEAMSTMQVSQLDLFRLLDQNRDGHLQLREVLAQTRLGNGWWMTPESIQEMYAAIKADPDGDGVLSLQEFSNMDLRDFHKYMRSHKAESSELVRNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPSRARQALFQQEMARLAREGGTDSQPEWALDRAYRDARVEL", "length": 502 }, "evidence": [ { "id": "F1SKI9", "url": "https://omabrowser.org/oma/group/F1SKI9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "X1WG80-1", "protein_name": "Transmembrane prolyl 4-hydroxylase", "gene_name": "p4htmb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLSGKMMEPQDDIEEDDSPSASAPPSSSPSPSSSPPPRALPRQRTSLQKSSVCSRSYFMVVMVFFHVYIINVIALLLYVHYNNGSNAISANRDFTSSDSSSHKVTGASDAQATADSGFPRNMFLPRIEGIRVGHVQKVSLVSGKVHEMKTLSLKPLLFEIPDFLSEEECAVVVRLAQLKGLMESQVMVPEGQEELDQQLNLSPEEIFNFLDLNQDGQLQPHEILTHSRVRDGIWLTSENLKEIYDGLKADLDGNGLLSLEEFGRLRSDAFQRFLLQRGVERSQLVRNSRHTWLYQGQGAHQVLQDLRKRVTLLTRLPSSLVELSEPLQVVRYEQGGHYHAHHDSGPVYPETACTHTRLAANTTSPFQTSCRYITVLFYLNNVQEGGETTFPVADNRTYEEASLIQNDVDLLDTRKHCDKGNLRVKPVKGTAVFWYNYLSDGRGWVGEQDEYSLHGGCVVTQGTKWVANNWINVDPDYQRQARYQLLVSQQESQEQEEPNSDQHIEAHQDL", "length": 510 }, "evidence": [ { "id": "F1SKI9", "url": "https://omabrowser.org/oma/group/F1SKI9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" }, { "name": "L-ascorbic acid binding", "id": "GO:0031418", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031418", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" }, { "name": "dioxygenase activity", "id": "GO:0051213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051213", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen", "id": "GO:0016705", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016705", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" }, { "name": "procollagen-proline 4-dioxygenase activity", "id": "GO:0004656", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004656", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" }, { "name": "hypoxia-inducible factor-proline dioxygenase activity", "id": "GO:0160082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160082", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of erythrocyte differentiation", "id": "GO:0045646", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045646", "evidence": [ { "database": "UniProtKB", "id": "F1SKI9", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "48400", "name": "", "equation": "L-prolyl-[hypoxia-inducible factor alpha subunit] + 2-oxoglutarate + O2 = trans-4-hydroxy-L-prolyl-[hypoxia-inducible factor alpha subunit] + succinate + CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "48400", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/48400" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKI9" }, { "id": "PS51471", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51471" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fe2OG dioxygenase", "eco_id": "ECO_0000259", "start_pos": 305, "end_pos": 455, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 343, "end_pos": 345 }, { "start_pos": 363, "end_pos": 365 }, { "start_pos": 377, "end_pos": 379 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKM1-1", "uniprot_ac": "F1SKM1", "uniprot_id": "F1SKM1_PIG", "mass": { "chemical_mass": 295076.0, "monoisotopic_mass": 295076.0 }, "refseq": { "ac": "XP_005669576", "name": "collagen alpha-1(VII) chain", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669576" }, "gene_names": [ { "name": "COL7A1", "type": "recommended", "evidence": [ { "id": "F1SKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ] }, { "name": "COL7A1", "type": "synonym", "evidence": [ { "id": "XP_005669576", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669576" } ] } ], "protein_names": [ { "name": "Collagen alpha-1(VII) chain", "type": "recommended", "evidence": [ { "id": "F1SKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM1/entry#names_and_taxonomy" } ] }, { "name": "Long-chain collagen", "type": "synonym", "evidence": [ { "id": "F1SKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM1/entry#names_and_taxonomy" } ] }, { "name": "collagen alpha-1(VII) chain", "type": "synonym", "evidence": [ { "id": "XP_005669576", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669576" } ] } ], "function": [ { "annotation": "Stratified squamous epithelial basement membrane protein that forms anchoring fibrils which may contribute to epithelial basement membrane organization and adherence by interacting with extracellular matrix (ECM) proteins such as type IV collagen.", "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1#function" }, { "database": "UniProtKB", "id": "ARBA00053615", "url": "https://www.uniprot.org/uniprotkb/ARBA00053615#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL7A1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000011355", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011355", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01450", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01450", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01482", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01482", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22627", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22627", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523209", "url": "https://www.ncbi.nlm.nih.gov/gene/100523209", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523209", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523209", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QTFFAVD", "url": "https://omabrowser.org/oma/group/QTFFAVD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKM1", "url": "https://www.orthodb.org/?gene=F1SKM1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00014", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00014", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00092", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00092", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1442490", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1566977", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1566977", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2022090", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-216083", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2214320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2214320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3000157", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000157", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5694530", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948216", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005669576", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669576", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKM1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLRLLVAVLCAGILAGAPRVRAQHRERVTCTRLYSADIVFLLDGSSSIGRSNFREVRGFLEGLVLPFSRAASAQGVRFAAVQYSDDPRTEFSLDTLGSGGDVIRAIRELSYKGGNTRTGAAILHVADQVFLPQLARPGVPKVCILITDGKSQDLVDAAAQRLKEQGVKLFAVGIKNADPEELKRIASQPTSDFFFFVNDFSILRTLLPLVSRRVCTTAGGVPVTLPPDDSTSGPRDLVLSEPGSQSLRVQWTAASGPVTGYKVQYTPLTGLGQPLSSERREVSVPAGETSVRLQGLRPLTEYQVTVVALYANSIGEAVSGTARTTALEGPELTIQNSTAHSFLVAWQSVPGATGYRVTWRVLSGGAMQQQELGPGQGSVLLHDLEPGTDYEVTVSALFGRNLGPATSLTARTDISVEQTLRPLILGPTSILLSWNLVPEARGYRLEWRRESGLEVPQKVVLPSDVTHYQLDGLQPGTEYRLTLYTLLEGREVATPATVVPTGPELPVGPVMDLQATELPGQRVRVSWSPVPSATEYRITMRSTQGVERTLVLPGSQTAFDLDDVRAGLSYTVRVSARVGAREGSASVLTVRREPEAPLAVPGLRVVASDTTRVRVAWGPVPGASGFRISWRTDNGLESVQTLPPEATATDITGLRPGTSYQVAVSALRGREEGLPAVIVARTDPVDPVRTVRVTQATSSSVTITWNRVPGATGYRVSWHSGHGPEKSQLVSGETTVAELDGLEPDTEYTVRVWAHVAGADGPPASVVVRTDPQPVGSVSKLQILNASSDVLRVTWVGVTGATAYRLAWGRSEGGPTRQQMLPGNTDSAEIRGLEGGVSYSVRVTALVGDREGAPVSIVVTTPPEAPPALETLRVVQRGEHSLRLRWQPVPGVRGFRLRWRPEGGQEQSRVLGPELSSYELDGLEPATQYRIWLSVLGPAGEGPPSEVTAYTESSRFPSTELRVVDTSLDSVTLAWTPVSGVSSYILSWRPLRGPGQELPGASQTLSGTSNSQRVTALEPGVSYIFSLTPVREGVQGPVASVTQNPVCPRGLMDVVFLLHTTRDNAHRSEAVKRALERLVSSVGPLGPQGVQVGLLSYSHRPSPLLSLNSSYDPGIILQNIRNIPYMDPSGNNLGVAVVTAHRYLLALDAPGRRRQVPGVMVLLVDEPLRGDFFSPIREAQAAGLKVMILGLAGADPEQLRRLVPGMDPVQNFFAIDDGPSLDRAVSGLATALCQTALTSQPQPEPCLVHCPKGQKGEPGEMGLRGQAGPPGPPGLPGRIGAPGPPGPPGSAIAKGERGFPGADGSPGSPGRPGTPGTSGPKGSPGWPGPRGEPGERGPRGPKGEPGEPGRVIGGEGPGLPGQKGDPGLPGPPGSRGPSGDPGPRGPPGFPGTAVKGEKGDRGERGPPGPGDGTAAPGDPGLPGLPGSPGPQGPVGPPGEKGEKGDSEDGAPGLPGQPGVPGERGLRGFPGDTGPKGDRGLTGAVGEPGEKGERGSPGPVGPQGPPGVPGRPGAEGPEGPPGPTGRRGEKGEPGRPGDPAVGPGGAGAKGEKGDMGPTGPKGATGTKGERGPPGLALPGDPGPKGDPGERGPIGLTGRAGPPGDSGPPGEKGDPGRPGTPGLVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGARGPVGEKGDQGDPGEDGRNGSPGPSGSKGDRGEPGPPGPPGRLVDTGLGAGEKGEPGDRGQEGPRGPKGDPGPPGASGERGISGLRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPPGLQGTAGKAGDPGRDGLPGLRGEQGPPGPPGPPGALGKPGEDGRPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGHDGPKGERGAPGSPGLQGPPGLPGQVGPPGQGFPGMPGSSGPKGDRGEIGPKGEQGLPGERGLRGEPGSVQNVERLLENIGLKTSALREIVETWDESSGSFLPVPERLRGPKGNPGERGPPGKEGPIGFSGDRGPKGDRGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPGLPGRAGSVGEAGRPGERGVRGEKGERGEQGRDGSPGLPGPPGPPGPKVAVDEIGSGLSRDQGPPGLKGAKGEPGSDGDRGPKGDRGMPGIKGDRGEPGQRGHDGSPGLPGERGVAGLEGKPGPQGPRGVPGPVGGHGDPGPPGAPGLAGPSGPQGPSGLKGEPGDTGPPGRGLPGPTGAVGLPGPPGPSGLVGPQGAPGLPGQVGETGKPGAPGRDGASGKDGERGVPGVPGSPGLPGPVGPKGEPGPMGTPGQAVIGPPGAKGEKGTPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGLKGNKGDPGVGAQGPPGPLGPPGLKGDLGPPGPPGAPGIVGFPGQTGLRGEMGQPGPSGERGLAGLPGREGAPGPLGPPGPAGSVGAPGAPGLKGDKGDPGAGPPGARGERGEPGVRGEDGRPGPEGPRGLMGPPGGRGERGEKGDAGSSGLKGDKGDSAVTVGPPGPRGAKGDMGERGPRGLDGDKGPRGDSGDPGEKGTKGEPGDRGSAGLLGPRGLTGPKGEPGAAGIPGDPGSPGKDGVPGVRGDKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGRKGELGEPGIPGPSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGPPGTGGFPGPRGSDGSSGPPGPPGSVGPKGPEGLQGQKGERGPPGESVVGAPGAPGTPGERGEQGRPGPAGPRGEKGEAALTEDDIRGLVRQEMSQHCACQGQFIASGSRPLPSYAADTAGPQLHRVPVLRVSHAEEEGQVPPEDDEYEYSEYSVEEYQNPEAPWDGDAPDPCSLPLDEGSCTAYTLRWYHRAVAGGTVACHPFVYGGCGGNANRFETREACESRCPPRMAQSQGTGAARS", "length": 2938, "header": "tr|F1SKM1-1|F1SKM1_PIG Isoform 1 of Collagen alpha-1(VII) chain OS=Sus scrofa OX=9823 GN=COL7A1 PE=4 SV=2 CANONICAL=F1SKM1-1" }, "isoforms": [ { "isoform_ac": "F1SKM1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1/entry#F1SKM1-1", "sequence": { "sequence": "MRLRLLVAVLCAGILAGAPRVRAQHRERVTCTRLYSADIVFLLDGSSSIGRSNFREVRGFLEGLVLPFSRAASAQGVRFAAVQYSDDPRTEFSLDTLGSGGDVIRAIRELSYKGGNTRTGAAILHVADQVFLPQLARPGVPKVCILITDGKSQDLVDAAAQRLKEQGVKLFAVGIKNADPEELKRIASQPTSDFFFFVNDFSILRTLLPLVSRRVCTTAGGVPVTLPPDDSTSGPRDLVLSEPGSQSLRVQWTAASGPVTGYKVQYTPLTGLGQPLSSERREVSVPAGETSVRLQGLRPLTEYQVTVVALYANSIGEAVSGTARTTALEGPELTIQNSTAHSFLVAWQSVPGATGYRVTWRVLSGGAMQQQELGPGQGSVLLHDLEPGTDYEVTVSALFGRNLGPATSLTARTDISVEQTLRPLILGPTSILLSWNLVPEARGYRLEWRRESGLEVPQKVVLPSDVTHYQLDGLQPGTEYRLTLYTLLEGREVATPATVVPTGPELPVGPVMDLQATELPGQRVRVSWSPVPSATEYRITMRSTQGVERTLVLPGSQTAFDLDDVRAGLSYTVRVSARVGAREGSASVLTVRREPEAPLAVPGLRVVASDTTRVRVAWGPVPGASGFRISWRTDNGLESVQTLPPEATATDITGLRPGTSYQVAVSALRGREEGLPAVIVARTDPVDPVRTVRVTQATSSSVTITWNRVPGATGYRVSWHSGHGPEKSQLVSGETTVAELDGLEPDTEYTVRVWAHVAGADGPPASVVVRTDPQPVGSVSKLQILNASSDVLRVTWVGVTGATAYRLAWGRSEGGPTRQQMLPGNTDSAEIRGLEGGVSYSVRVTALVGDREGAPVSIVVTTPPEAPPALETLRVVQRGEHSLRLRWQPVPGVRGFRLRWRPEGGQEQSRVLGPELSSYELDGLEPATQYRIWLSVLGPAGEGPPSEVTAYTESSRFPSTELRVVDTSLDSVTLAWTPVSGVSSYILSWRPLRGPGQELPGASQTLSGTSNSQRVTALEPGVSYIFSLTPVREGVQGPVASVTQNPVCPRGLMDVVFLLHTTRDNAHRSEAVKRALERLVSSVGPLGPQGVQVGLLSYSHRPSPLLSLNSSYDPGIILQNIRNIPYMDPSGNNLGVAVVTAHRYLLALDAPGRRRQVPGVMVLLVDEPLRGDFFSPIREAQAAGLKVMILGLAGADPEQLRRLVPGMDPVQNFFAIDDGPSLDRAVSGLATALCQTALTSQPQPEPCLVHCPKGQKGEPGEMGLRGQAGPPGPPGLPGRIGAPGPPGPPGSAIAKGERGFPGADGSPGSPGRPGTPGTSGPKGSPGWPGPRGEPGERGPRGPKGEPGEPGRVIGGEGPGLPGQKGDPGLPGPPGSRGPSGDPGPRGPPGFPGTAVKGEKGDRGERGPPGPGDGTAAPGDPGLPGLPGSPGPQGPVGPPGEKGEKGDSEDGAPGLPGQPGVPGERGLRGFPGDTGPKGDRGLTGAVGEPGEKGERGSPGPVGPQGPPGVPGRPGAEGPEGPPGPTGRRGEKGEPGRPGDPAVGPGGAGAKGEKGDMGPTGPKGATGTKGERGPPGLALPGDPGPKGDPGERGPIGLTGRAGPPGDSGPPGEKGDPGRPGTPGLVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGARGPVGEKGDQGDPGEDGRNGSPGPSGSKGDRGEPGPPGPPGRLVDTGLGAGEKGEPGDRGQEGPRGPKGDPGPPGASGERGISGLRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPPGLQGTAGKAGDPGRDGLPGLRGEQGPPGPPGPPGALGKPGEDGRPGLNGKNGEPGDPGEDGRKGEKGDSGAPGREGHDGPKGERGAPGSPGLQGPPGLPGQVGPPGQGFPGMPGSSGPKGDRGEIGPKGEQGLPGERGLRGEPGSVQNVERLLENIGLKTSALREIVETWDESSGSFLPVPERLRGPKGNPGERGPPGKEGPIGFSGDRGPKGDRGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPGLPGRAGSVGEAGRPGERGVRGEKGERGEQGRDGSPGLPGPPGPPGPKVAVDEIGSGLSRDQGPPGLKGAKGEPGSDGDRGPKGDRGMPGIKGDRGEPGQRGHDGSPGLPGERGVAGLEGKPGPQGPRGVPGPVGGHGDPGPPGAPGLAGPSGPQGPSGLKGEPGDTGPPGRGLPGPTGAVGLPGPPGPSGLVGPQGAPGLPGQVGETGKPGAPGRDGASGKDGERGVPGVPGSPGLPGPVGPKGEPGPMGTPGQAVIGPPGAKGEKGTPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGLKGNKGDPGVGAQGPPGPLGPPGLKGDLGPPGPPGAPGIVGFPGQTGLRGEMGQPGPSGERGLAGLPGREGAPGPLGPPGPAGSVGAPGAPGLKGDKGDPGAGPPGARGERGEPGVRGEDGRPGPEGPRGLMGPPGGRGERGEKGDAGSSGLKGDKGDSAVTVGPPGPRGAKGDMGERGPRGLDGDKGPRGDSGDPGEKGTKGEPGDRGSAGLLGPRGLTGPKGEPGAAGIPGDPGSPGKDGVPGVRGDKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGRKGELGEPGIPGPSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGPPGTGGFPGPRGSDGSSGPPGPPGSVGPKGPEGLQGQKGERGPPGESVVGAPGAPGTPGERGEQGRPGPAGPRGEKGEAALTEDDIRGLVRQEMSQHCACQGQFIASGSRPLPSYAADTAGPQLHRVPVLRVSHAEEEGQVPPEDDEYEYSEYSVEEYQNPEAPWDGDAPDPCSLPLDEGSCTAYTLRWYHRAVAGGTVACHPFVYGGCGGNANRFETREACESRCPPRMAQSQGTGAARS", "length": 2938, "header": "tr|F1SKM1-1|F1SKM1_PIG Isoform 1 of Collagen alpha-1(VII) chain OS=Sus scrofa OX=9823 GN=COL7A1 PE=4 SV=2 CANONICAL=F1SKM1-1" }, "locus": { "chromosome": "13", "start_pos": 31294656, "end_pos": 31263062, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012432.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012432.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012108.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012108.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1315, "start_aa": "Thr", "end_pos": 1315, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1315", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1524, "start_aa": "Thr", "end_pos": 1524, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1524", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1619, "start_aa": "Thr", "end_pos": 1619, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1619", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2216, "start_aa": "Thr", "end_pos": 2216, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2216", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2290, "start_aa": "Thr", "end_pos": 2290, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2290", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2754, "start_aa": "Thr", "end_pos": 2754, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2754", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523209", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523209", "resource": "KEGG Pathway" }, { "id": "R-SSC-1442490", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "resource": "Reactome", "description": "Collagen degradation" }, { "id": "R-SSC-1566977", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1566977", "resource": "Reactome", "description": "Fibronectin matrix formation" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" }, { "id": "R-SSC-2022090", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "resource": "Reactome", "description": "Assembly of collagen fibrils and other multimeric structures" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" }, { "id": "R-SSC-216083", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "resource": "Reactome", "description": "Integrin cell surface interactions" }, { "id": "R-SSC-2214320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2214320", "resource": "Reactome", "description": "Anchoring fibril formation" }, { "id": "R-SSC-3000157", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000157", "resource": "Reactome", "description": "Laminin interactions" }, { "id": "R-SSC-5694530", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "resource": "Reactome", "description": "Cargo concentration in the ER" }, { "id": "R-SSC-8948216", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "resource": "Reactome", "description": "Collagen chain trimerization" } ], "orthologs": [ { "uniprot_canonical_ac": "Q02388-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "COL7A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTLRLLVAALCAGILAEAPRVRAQHRERVTCTRLYAADIVFLLDGSSSIGRSNFREVRSFLEGLVLPFSGAASAQGVRFATVQYSDDPRTEFGLDALGSGGDVIRAIRELSYKGGNTRTGAAILHVADHVFLPQLARPGVPKVCILITDGKSQDLVDTAAQRLKGQGVKLFAVGIKNADPEELKRVASQPTSDFFFFVNDFSILRTLLPLVSRRVCTTAGGVPVTRPPDDSTSAPRDLVLSEPSSQSLRVQWTAASGPVTGYKVQYTPLTGLGQPLPSERQEVNVPAGETSVRLRGLRPLTEYQVTVIALYANSIGEAVSGTARTTALEGPELTIQNTTAHSLLVAWRSVPGATGYRVTWRVLSGGPTQQQELGPGQGSVLLRDLEPGTDYEVTVSTLFGRSVGPATSLMARTDASVEQTLRPVILGPTSILLSWNLVPEARGYRLEWRRETGLEPPQKVVLPSDVTRYQLDGLQPGTEYRLTLYTLLEGHEVATPATVVPTGPELPVSPVTDLQATELPGQRVRVSWSPVPGATQYRIIVRSTQGVERTLVLPGSQTAFDLDDVQAGLSYTVRVSARVGPREGSASVLTVRREPETPLAVPGLRVVVSDATRVRVAWGPVPGASGFRISWSTGSGPESSQTLPPDSTATDITGLQPGTTYQVAVSVLRGREEGPAAVIVARTDPLGPVRTVHVTQASSSSVTITWTRVPGATGYRVSWHSAHGPEKSQLVSGEATVAELDGLEPDTEYTVHVRAHVAGVDGPPASVVVRTAPEPVGRVSRLQILNASSDVLRITWVGVTGATAYRLAWGRSEGGPMRHQILPGNTDSAEIRGLEGGVSYSVRVTALVGDREGTPVSIVVTTPPEAPPALGTLHVVQRGEHSLRLRWEPVPRAQGFLLHWQPEGGQEQSRVLGPELSSYHLDGLEPATQYRVRLSVLGPAGEGPSAEVTARTESPRVPSIELRVVDTSIDSVTLAWTPVSRASSYILSWRPLRGPGQEVPGSPQTLPGISSSQRVTGLEPGVSYIFSLTPVLDGVRGPEASVTQTPVCPRGLADVVFLPHATQDNAHRAEATRRVLERLVLALGPLGPQAVQVGLLSYSHRPSPLFPLNGSHDLGIILQRIRDMPYMDPSGNNLGTAVVTAHRYMLAPDAPGRRQHVPGVMVLLVDEPLRGDIFSPIREAQASGLNVVMLGMAGADPEQLRRLAPGMDSVQTFFAVDDGPSLDQAVSGLATALCQASFTTQPRPEPCPVYCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSVGPPGASGLKGDKGDPGVGLPGPRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPPGPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGHKGEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGPPGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPAGPRGEKGEAALTEDDIRGFVRQEMSQHCACQGQFIASGSRPLPSYAADTAGSQLHAVPVLRVSHAEEEERVPPEDDEYSEYSEYSVEEYQDPEAPWDSDDPCSLPLDEGSCTAYTLRWYHRAVTGSTEACHPFVYGGCGGNANRFGTREACERRCPPRVVQSQGTGTAQD", "length": 2944 }, "evidence": [ { "id": "F1SKM1", "url": "https://omabrowser.org/oma/group/F1SKM1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q63870-1", "protein_name": "Collagen alpha-1(VII) chain", "gene_name": "Col7a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRLRLLVAALCAAEILMGAPEVWAQPRDRVTCTRLYAADIVFLLDGSSSIGRSNFREVRGFLEGLVLPFSGAASAQGVRFATVQYSDDPQTEFGLDTLGSGSDTIRAIRELSYKGGNTRTGAALHHVSDRVFLPRLTRPGVPKVCILITDGKSQDLVDTAAQKLKGQGVKLFAVGIKNADPEELKRVASQPTSDFFFFVNDFSILRTLLPLISRRVCTTAGGVPVTLPSDDTPSGPRDLVLSEPSSQSLRVQWTAASGPVTGYKVQYTPLTGLGQPLPSERQEVNIPAGETSTRLQGLRPLTDYQVTVVALYANSIGEAVSGTARTTAKEGLELSLQNITSHSLLVAWRRVPGANGYRVTWRDLSGGPTQQQDLSPGQGSVFLDHLEPGTDYEVTVSALFGHSVGPAASLTARTASSVEQTLHPIILSPTSILLSWNLVPEARGYRLEWRRESGLETPQKVELPPDVTRHQLDGLQPGTEYRLTLYTLLEGREVATPATVVPTGLEQLVSPVMNLQAIELPGQRVRVSWNPVPGATEYRFTVRTTQGVERTLLLPGSQTTFDLDDVRAGLSYTVRVSARVGAQEGDASILTIHRDPEAPLVVPGLRVVASDATRIRVAWGLVPGASGFRISWRTGSGPESSRTLTPDSTVTDILGLQPSTSYQVAVSALRGREEGPPVVIVARTDPLGPVRRVHLTQAGSSSVSITWTGVPGATGYRVSWHSGHGPEKSLLVSGDATVAEIDGLEPDTEYIVRVRTHVAGVDGAPASVVVRTAPEPVGSVSKLQILNASSDVLRVTWVGVPGATSYKLAWGRSEGGPMKHRILPGNKESAEIRDLEGGVSYSVRVTALVGDREGAPVSIVITTPPATPALLETLQVVQSGEHSLRLRWEPVPGAPGFRLHWQPEGGQEQSLTLGPESNSYNLVGLEPATKYQVWLTVLGQTGEGPPRKVTAYTEPSHIPSTELRVVDTSIDSVTLTWTPVSGASSYILSWRPLRGTGQEVPRAPQTLPGTSSSHRVTGLEPGISYVFSLTPIQSGVRGSEISVTQTPACSHGPVDVVFLLHATRDNAHNAEAVRRVLERLVSALGPLGPQAAQVGLLTYSHRPSPLFPLNSSHDLGIILRKIRDIPYVDPSGNNLGTAVTTAHRYLLASNAPGRRQQVPGVMVLLVDEPLRGDILSPIREAQTSGLKVMALSLVGADPEQLRRLAPGTDPIQNFFAVDNGPGLDRAVSDLAVALCQAAVTIEPQTGPCAVHCPKGQKGEPGVTGLQGQAGPPGPPGLPGRTGAPGPQGPPGSTQAKGERGFPGPEGPPGSPGLPGVPGSPGIKGSTGRPGPRGEQGERGPQGPKGEPGEPGQITGGGGPGFPGKKGDPGPSGPPGSRGPVGDPGPRGPPGLPGISVKGDKGDRGERGPPGPGIGASEQGDPGLPGLPGSPGPQGPAGRPGEKGEKGDCEDGGPGLPGQPGPPGEPGLRGAPGMTGPKGDRGLTGTPGEPGVKGERGHPGPVGPQGLPGAAGHPGVEGPEGPPGPTGRRGEKGEPGRPGDPAVGPGGAGAKGEKGEAGLPGPRGASGSKGEQGAPGLALPGDPGPKGDPGDRGPIGLTGRAGPTGDSGPPGEKGEPGRPGSPGPVGPRGRDGEAGEKGDEGIPGEPGLPGKAGERGLRGAPGPRGPVGEKGDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDAGIESRDKGEPGQEGPRGPKGDPGPPGVSGERGIDGLRGPPGPQGDPGVRGPAGDKGDRGPPGLDGRSGLDGKPGAPGPPGLHGASGKAGDPGRDGLPGLRGEHGPPGPPGPPGVPGKAGDDGKPGLNGKNGDPGDPGEDGRKGEKGDSGAPGREGPDGPKGERGAPGNPGLQGPPGLPGQVGPPGQGFPGVPGITGPKGDRGETGSKGEQGLPGERGLRGEPGSLPNAERLLETAGIKVSALREIVDTWDESSGSFLPVPERRPGPKGDPGDRGPPGKEGLIGFPGERGLKGERGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPGLPGRAGGSGEAGRPGERGERGEKGERGDQGRDGLPGLPGPPGPPGPKVAIEEPGPGLAREQGPPGLKGAKGEPGSDGDPGPKGDRGVPGIKGDVGEPGKRGHDGNPGLPGERGVAGPEGKPGLQGPRGTPGPVGSHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLPGPVGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGPPGRDGSSGKDGDRGSPGVPGSPGLPGPVGPKGEPGPVGAPGQVVVGPPGAKGEKGAPGDLAGALLGEPGAKGDRGLPGPRGEKGEAGRAGGPGDPGEDGQKGAPGLKGLKGEPGIGVQGPPGPSGPPGMKGDLGPPGAPGAPGVVGFPGQTGPRGETGQPGPVGERGLAGPPGREGAPGPLGPPGPPGSAGAPGASGLKGDKGDPGAGLPGPRGERGEPGVRGEDGHPGQEGPRGLVGPPGSRGEQGEKGAAGAAGLKGDKGDSAVIEGPPGPRGAKGDMGERGPRGIDGDKGPRGESGNPGDKGSKGEPGDKGSAGSIGVRGLTGPKGEPGAAGIPGEPGAPGKDGIPGFRGDKGDIGFMGPRGLKGEKGIKGTCGRDGERGDKGEAGFPGRPGLAGKKGDMGEPGLPGQSGAPGKEGLIGPKGDRGFDGQSGPKGDQGEKGERGPPGVGGFPGPRGNDGSSGPPGPPGGVGPKGPEGLQGQKGERGPPGESVVGAPGAPGTPGERGEQGRPGPAGPRGEKGEAALTEDDIRDFVRQEMSQHCACQGQFIASGSRPLPGYAADTAGSQLHHVPVLRVSHVEEEGQVPPEDDDDFSEYSVYSVEDYQEPEVPWDGEAEIKGWDQRGSDLCSLPLDEGSCTAYTLRWYHRAVPGGTACHPFVYGGCGGNANRFGTREACERRCPPQGVHSQKTGAA", "length": 2944 }, "evidence": [ { "id": "F1SKM1", "url": "https://omabrowser.org/oma/group/F1SKM1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q91WW1-1", "protein_name": "Urocortin-2", "gene_name": "Ucn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTRWALVVFMVLMLDRVPGTPIPTFQLLPQNYPETTPSSVSSESPSDTTTGPSASWSNSKASPYLDTRVILSLDVPIGLLRILLEQARNKAARNQAATNAQILARVGRR", "length": 109 }, "evidence": [ { "id": "F1SKM1", "url": "https://omabrowser.org/oma/group/F1SKM1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ], "pmid": "" }, { "name": "extracellular matrix structural constituent conferring tensile strength", "id": "GO:0030020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030020", "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ], "pmid": "" }, { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "F1SKM1", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1109, "end_pos": 1111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1680, "end_pos": 1682, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 786, "end_pos": 788, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" }, { "id": "PS50279", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50279" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BPTI/Kunitz inhibitor", "eco_id": "ECO_0000259", "start_pos": 2870, "end_pos": 2923, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 234, "end_pos": 329, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKM1" }, { "id": "PS50234", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFA", "eco_id": "ECO_0000259", "start_pos": 38, "end_pos": 211, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1315, 1524, 1619, 2216, 2290, 2754 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1109, "end_pos": 1111 }, { "start_pos": 1680, "end_pos": 1682 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 786, "end_pos": 788 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKN3-1", "uniprot_ac": "F1SKN3", "uniprot_id": "F1SKN3_PIG", "mass": { "chemical_mass": 40061.0, "monoisotopic_mass": 40061.0 }, "refseq": { "ac": "XP_003355396", "name": "galanin receptor type 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355396" }, "gene_names": [ { "name": "GALR3", "type": "recommended", "evidence": [ { "id": "F1SKN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ] }, { "name": "GALR3", "type": "synonym", "evidence": [ { "id": "XP_003355396", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355396" } ] } ], "protein_names": [ { "name": "Galanin receptor type 3", "type": "recommended", "evidence": [ { "id": "F1SKN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKN3/entry#names_and_taxonomy" } ] }, { "name": "galanin receptor type 3", "type": "synonym", "evidence": [ { "id": "XP_003355396", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355396" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GALR3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3", "locus": { "chromosome": "5", "start_pos": 10023746, "end_pos": 10026120, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000121", "url": "https://www.ensembl.org/id/ENSSSCG00000000121" } ] } } ], "crossref": [ { "id": "F1SKN3", "url": "https://alphafold.ebi.ac.uk/entry/F1SKN3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000121", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000121", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623444", "url": "https://www.ncbi.nlm.nih.gov/gene/100623444", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000405", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000405", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003908", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003908", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623444", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623444", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YQIVHYH", "url": "https://omabrowser.org/oma/group/YQIVHYH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKN3", "url": "https://www.orthodb.org/?gene=F1SKN3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45695", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45695", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45695:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45695:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-375276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003355396", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355396", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SKN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADAQNVSLDSPGSTGAVAVPVVFALIFLLGTVGNGLVLAVLLQPGPSAWLEPGSTTDLFILNLAAADLCFILCCVPFQAAIYTLDAWLFGALVCKAVHLLIYLTMYASSFTLAAVSVDRYLAVRHPLRSRALRTPRNARAAVGLVWLLAALFSAPYLSYYGTVRYGALELCVPAWEDARRRALDVATFAAGYLLPVAVVSLAYGRTLRFLWAAVGPPGAAAAEARRRATGRAGRAMLAVAALYALCWGPHHALILCFWYGRFAFSPATYACRLASHCLAYANSCLNPLVYALASRHFRARLRRLWPCGPRRPRCPPGARRALRRVRPASPGPAGCPGDARPRGRLAAGGGWGGEPGREPARGGEPGRALPAPGPE", "length": 376, "header": "tr|F1SKN3-1|F1SKN3_PIG Isoform 1 of Galanin receptor type 3 OS=Sus scrofa OX=9823 GN=GALR3 PE=3 SV=3 CANONICAL=F1SKN3-1" }, "isoforms": [ { "isoform_ac": "F1SKN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SKN3/entry#F1SKN3-1", "sequence": { "sequence": "MADAQNVSLDSPGSTGAVAVPVVFALIFLLGTVGNGLVLAVLLQPGPSAWLEPGSTTDLFILNLAAADLCFILCCVPFQAAIYTLDAWLFGALVCKAVHLLIYLTMYASSFTLAAVSVDRYLAVRHPLRSRALRTPRNARAAVGLVWLLAALFSAPYLSYYGTVRYGALELCVPAWEDARRRALDVATFAAGYLLPVAVVSLAYGRTLRFLWAAVGPPGAAAAEARRRATGRAGRAMLAVAALYALCWGPHHALILCFWYGRFAFSPATYACRLASHCLAYANSCLNPLVYALASRHFRARLRRLWPCGPRRPRCPPGARRALRRVRPASPGPAGCPGDARPRGRLAAGGGWGGEPGREPARGGEPGRALPAPGPE", "length": 376, "header": "tr|F1SKN3-1|F1SKN3_PIG Isoform 1 of Galanin receptor type 3 OS=Sus scrofa OX=9823 GN=GALR3 PE=3 SV=3 CANONICAL=F1SKN3-1" }, "locus": { "chromosome": "5", "start_pos": 10026101, "end_pos": 10024351, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000127.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000127.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000125.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000125.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623444", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623444", "resource": "KEGG Pathway" }, { "id": "R-SSC-375276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375276", "resource": "Reactome", "description": "Peptide ligand-binding receptors" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XZX0-1", "protein_name": "Galanin receptor 3", "gene_name": "GALR3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPGGWNASSDSPELPAAGIIVPVVFSLIFLLGTVGNGLVLAVLLRNGQVKYNTTNLFILNLAVADLCFIICCVPFQATIYTLDGWLFGAFACKAVHFLIYLTMYASSFTLATVSIDRYLAIRYPLKSRDLRTTQNAGVAIVVIWLLSLLFAGPYLSYYQIVHYHGVPICVPVWEDQRRKILDILTFVVGYLLPVTVVSLAYARTIKFLWTSVDPIERISESRKAKRKVTRMIVAVAILFCLCWLPHHLVILCFWFGHFPFNRATYACRLASHCLSYANSCLNPIVYALVSKHFRKRFKQVFTCLIFQNKNKKKRNGNKVHMVTLGKGFTNSTGGFFGGNTELTRVPKENSRKRDTEGANHARAWTHQPQEVQKELLEEESLVTTGHPLAKTPPRRPQECLAVDYK", "length": 405 }, "evidence": [ { "id": "F1SKN3", "url": "https://omabrowser.org/oma/group/F1SKN3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O60755-1", "protein_name": "Galanin receptor type 3", "gene_name": "GALR3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADAQNISLDSPGSVGAVAVPVVFALIFLLGTVGNGLVLAVLLQPGPSAWQEPGSTTDLFILNLAVADLCFILCCVPFQATIYTLDAWLFGALVCKAVHLLIYLTMYASSFTLAAVSVDRYLAVRHPLRSRALRTPRNARAAVGLVWLLAALFSAPYLSYYGTVRYGALELCVPAWEDARRRALDVATFAAGYLLPVAVVSLAYGRTLRFLWAAVGPAGAAAAEARRRATGRAGRAMLAVAALYALCWGPHHALILCFWYGRFAFSPATYACRLASHCLAYANSCLNPLVYALASRHFRARFRRLWPCGRRRRHRARRALRRVRPASSGPPGCPGDARPSGRLLAGGGQGPEPREGPVHGGEAARGPE", "length": 368 }, "evidence": [ { "id": "F1SKN3", "url": "https://omabrowser.org/oma/group/F1SKN3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O88626-1", "protein_name": "Galanin receptor type 3", "gene_name": "Galr3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADIQNISLDSPGSVGAVAVPVIFALIFLLGMVGNGLVLAVLLQPGPSAWQEPRSTTDLFILNLAVADLCFILCCVPFQAAIYTLDAWLFGAFVCKTVHLLIYLTMYASSFTLAAVSLDRYLAVRHPLRSRALRTPRNARAAVGLVWLLAALFSAPYLSYYGTVRYGALELCVPAWEDARRRALDVATFAAGYLLPVAVVSLAYGRTLCFLWAAVGPAGAAAAEARRRATGRAGRAMLAVAALYALCWGPHHALILCFWYGRFAFSPATYACRLASHCLAYANSCLNPLVYSLASRHFRARFRRLWPCGRRRHRHHHRAHRALRRVQPASSGPAGYPGDARPRGWSMEPRGDALRGGGETRLTLSPRGPQ", "length": 370 }, "evidence": [ { "id": "F1SKN3", "url": "https://omabrowser.org/oma/group/F1SKN3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O88853-1", "protein_name": "Galanin receptor type 3", "gene_name": "Galr3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIQNISLDSPGSVGAVAVPVVFALIFLLGMVGNGLVLAVLLQPGPSAWQEPGSTTDLFILNLAVADLCFILCCVPFQAAIYTLDAWLFGAFVCKTVHLLIYLTMYASSFTLAAVSVDRYLAVRHPLRSRALRTPRNARAAVGLVWLLAALFSAPYLSYYGTVRYGALELCVPAWEDARRRALDVATFAAGYLLPVTVVSLAYGRTLCFLWAAVGPAGAAAAEARRRATGRAGRAMLTVAALYALCWGPHHALILCFWYGRFAFSPATYACRLASHCLAYANSCLNPLVYSLASRHFRARFRRLWPCGHRRHRHHHHRLHRALRRVQPASSGPAGYPGDARPRGWSMEPRGDALRGGETRLTLSARGPQ", "length": 370 }, "evidence": [ { "id": "F1SKN3", "url": "https://omabrowser.org/oma/group/F1SKN3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ], "pmid": "" }, { "name": "9+0 non-motile cilium", "id": "GO:0097731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097731", "evidence": [ { "database": "UniProtKB", "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ], "pmid": "" }, { "name": "G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger", "id": "GO:0007187", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007187", "evidence": [ { "database": "UniProtKB", "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ], "pmid": "" }, { "name": "galanin-activated signaling pathway", "id": "GO:0090663", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090663", "evidence": [ { "database": "UniProtKB", "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "peptide hormone binding", "id": "GO:0017046", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017046", "evidence": [ { "database": "UniProtKB", "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ], "pmid": "" }, { "name": "galanin receptor activity", "id": "GO:0004966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004966", "evidence": [ { "database": "UniProtKB", "id": "F1SKN3", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKN3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 376, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKN3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKN3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKN3" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 291, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKP5-1", "uniprot_ac": "F1SKP5", "uniprot_id": "F1SKP5_PIG", "mass": { "chemical_mass": 17753.0, "monoisotopic_mass": 17753.0 }, "refseq": { "ac": "XP_001924500", "name": "transcription factor MafF isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924500" }, "gene_names": [ { "name": "MAFF", "type": "recommended", "evidence": [ { "id": "F1SKP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ] }, { "name": "MAFF", "type": "synonym", "evidence": [ { "id": "XP_001924500", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924500" } ] } ], "protein_names": [ { "name": "MAF bZIP transcription factor F", "type": "synonym", "evidence": [ { "id": "F1SKP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP5/entry#names_and_taxonomy" } ] }, { "name": "transcription factor MafF isoform X2", "type": "synonym", "evidence": [ { "id": "XP_001924500", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924500" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAFF", "url": "https://www.uniprot.org/uniprotkb/F1SKP5", "locus": { "chromosome": "5", "start_pos": 9683660, "end_pos": 9696023, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030165", "url": "https://www.ensembl.org/id/ENSSSCG00000030165" } ] } } ], "crossref": [ { "id": "F1SKP5", "url": "https://alphafold.ebi.ac.uk/entry/F1SKP5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030165", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030165", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14717", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14717", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156484", "url": "https://www.ncbi.nlm.nih.gov/gene/100156484", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008917", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008917", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156484", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156484", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SKP5", "url": "https://www.orthodb.org/?gene=F1SKP5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10129:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10129:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03131", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03131", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001924500", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924500", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKP5-1", "url": "https://www.uniprot.org/uniprotkb/F1SKP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLKNRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSVAAARGPAALVAPASVITIVKSAPSPGPGPAPAAGPAPGPAPAACS", "length": 166, "header": "tr|F1SKP5-1|F1SKP5_PIG Isoform 1 of MAF bZIP transcription factor F OS=Sus scrofa OX=9823 GN=MAFF PE=3 SV=3 CANONICAL=F1SKP5-1" }, "isoforms": [ { "isoform_ac": "F1SKP5-1", "url": "https://www.uniprot.org/uniprotkb/F1SKP5/entry#F1SKP5-1", "sequence": { "sequence": "MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLKNRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARSVAAARGPAALVAPASVITIVKSAPSPGPGPAPAAGPAPGPAPAACS", "length": 166, "header": "tr|F1SKP5-1|F1SKP5_PIG Isoform 1 of MAF bZIP transcription factor F OS=Sus scrofa OX=9823 GN=MAFF PE=3 SV=3 CANONICAL=F1SKP5-1" }, "locus": { "chromosome": "5", "start_pos": 9686122, "end_pos": 9685049, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028972.5", "url": "https://www.ensembl.org/id/ENSSSCT00000028972.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024532.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024532.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156484", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156484", "resource": "KEGG Pathway" }, { "id": "R-SSC-983231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983231", "resource": "Reactome", "description": "Factors involved in megakaryocyte development and platelet production" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of epidermal cell differentiation", "id": "GO:0045604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045604", "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SKP5", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKP5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 166, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKP5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKP5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP5" }, { "id": "PS50217", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50217" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BZIP", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 114, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKP8-1", "uniprot_ac": "F1SKP8", "uniprot_id": "F1SKP8_PIG", "mass": { "chemical_mass": 49592.0, "monoisotopic_mass": 49592.0 }, "refseq": { "ac": "XP_003126071", "name": "inward rectifier potassium channel 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126071" }, "gene_names": [ { "name": "KCNJ4", "type": "recommended", "evidence": [ { "id": "F1SKP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" } ] }, { "name": "KCNJ4", "type": "synonym", "evidence": [ { "id": "XP_003126071", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126071" } ] } ], "protein_names": [ { "name": "Potassium inwardly rectifying channel subfamily J member 4", "type": "synonym", "evidence": [ { "id": "F1SKP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP8/entry#names_and_taxonomy" } ] }, { "name": "inward rectifier potassium channel 4", "type": "synonym", "evidence": [ { "id": "XP_003126071", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126071" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKP8", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNJ4", "url": "https://www.uniprot.org/uniprotkb/F1SKP8", "locus": { "chromosome": "5", "start_pos": 9548520, "end_pos": 9547177, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000106", "url": "https://www.ensembl.org/id/ENSSSCG00000000106" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000106", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000106", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100523060", "url": "https://www.ncbi.nlm.nih.gov/gene/100523060", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013518", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013518", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041647", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041647", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523060", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523060", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GGIIQMM", "url": "https://omabrowser.org/oma/group/GGIIQMM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKP8", "url": "https://www.orthodb.org/?gene=F1SKP8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11767", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11767", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11767:SF53", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11767:SF53", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01007", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01007", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17655", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17655", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1296041", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296041", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1296053", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296053", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5576886", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576886", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-997272", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-997272", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126071", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126071", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29463", "url": "https://www.rhea-db.org/rhea/29463", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SKP8", "url": "https://www.uniprot.org/uniprotkb/F1SKP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHGHSRNGQAHVPRRKRRNRFVKKNGQCNVYFANLSNKSQRYMADIFTTCVDTRWRYMLMIFSAAFLVSWLFFGLLFWCIAFFHGDLEAGPAGATTGSPAGGGGGGGAAPAAPKPCIMHVNGFLGAFLFSVETQTTIGYGFRCVTEECPLAVIAVVVQSIVGCVIDSFMIGTIMAKMARPKKRAQTLLFSHHAVISVRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPYMTQEGEYLPLDQRDLNVGYDIGLDRIFLVSPIIIVHEIDEDSPLYGMGKEELESEDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVVFEEKSHYKVDYSRFHKTYEVAGTPCCSARELQESKITVLPAPPPPPSAFCYENELALMSQEEEEMEEEAAAAAAVAAGLGLEAGSKEEAGIIRMLEFGSHLDLERMQATLPLDNISYRRESAI", "length": 447, "header": "tr|F1SKP8-1|F1SKP8_PIG Isoform 1 of Potassium inwardly rectifying channel subfamily J member 4 OS=Sus scrofa OX=9823 GN=KCNJ4 PE=3 SV=1 CANONICAL=F1SKP8-1" }, "isoforms": [ { "isoform_ac": "F1SKP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKP8/entry#F1SKP8-1", "sequence": { "sequence": "MHGHSRNGQAHVPRRKRRNRFVKKNGQCNVYFANLSNKSQRYMADIFTTCVDTRWRYMLMIFSAAFLVSWLFFGLLFWCIAFFHGDLEAGPAGATTGSPAGGGGGGGAAPAAPKPCIMHVNGFLGAFLFSVETQTTIGYGFRCVTEECPLAVIAVVVQSIVGCVIDSFMIGTIMAKMARPKKRAQTLLFSHHAVISVRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPYMTQEGEYLPLDQRDLNVGYDIGLDRIFLVSPIIIVHEIDEDSPLYGMGKEELESEDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVVFEEKSHYKVDYSRFHKTYEVAGTPCCSARELQESKITVLPAPPPPPSAFCYENELALMSQEEEEMEEEAAAAAAVAAGLGLEAGSKEEAGIIRMLEFGSHLDLERMQATLPLDNISYRRESAI", "length": 447, "header": "tr|F1SKP8-1|F1SKP8_PIG Isoform 1 of Potassium inwardly rectifying channel subfamily J member 4 OS=Sus scrofa OX=9823 GN=KCNJ4 PE=3 SV=1 CANONICAL=F1SKP8-1" }, "locus": { "chromosome": "5", "start_pos": 9548517, "end_pos": 9547177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000112.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000112.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000110.1", "url": "https://www.ensembl.org/id/ENSSSCP00000000110.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKP8", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523060", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523060", "resource": "KEGG Pathway" }, { "id": "R-SSC-1296041", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296041", "resource": "Reactome", "description": "Activation of G protein gated Potassium channels" }, { "id": "R-SSC-1296053", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296053", "resource": "Reactome", "description": "Classical Kir channels" }, { "id": "R-SSC-5576886", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576886", "resource": "Reactome", "description": "Phase 4 - resting membrane potential" }, { "id": "R-SSC-997272", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-997272", "resource": "Reactome", "description": "Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M4V6-1", "protein_name": "Potassium inwardly rectifying channel subfamily J member 4", "gene_name": "KCNJ4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MHGHSRNGQAHVPRRKRRNRFVKKNGQCNVYFANLSNKSQRYMADIFTTCVDTRWRYMLMIFSAAFLVSWLFFGLLFWCIAFFHGDLEAGPAGAAAGPPAGGSGAAPVAPKPCIMHVNGFLGAFLFSVETQTTIGYGFRCVTEECPLAVIAVVVQSIVGCVIDSFMIGTIMAKMARPKKRAQTLLFSHHAVISVRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPYMTQEGEYLPLDQRDLNVGYDIGLDRIFLVSPIIIVHEIDEDSPLYGMGKEELESEDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVVFEEKSHYKVDYSRFHKTYEVAGTPCCSARELQESKITVLPAPPPPPSAFCYENELALMSQEEEEMEEEAAAAAAVAAGLGLEAGSKEEAGIIRMLEFGSHLDLERMQATLPLDNISYRRESAI", "length": 444 }, "evidence": [ { "id": "F1SKP8", "url": "https://omabrowser.org/oma/group/F1SKP8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F807-1", "protein_name": "ATP-sensitive inward rectifier potassium channel 12", "gene_name": "kcnj12b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVGKPHRYNIVSSSEEDVGRHGTMPALGNGFGNGKIQTRRKLRSRFVNKTGQCNVSFAHMDEQSQRYLADIFTTCVDSRWRWMFLLFSLAFVISWLAFGFAFWLIALVHGDLEKPQENFTPCVMQVNSFVAAFLFSVETQTTIGYGFRCVTEECPLAVFMVVFQSIVGCIIDSFMIGAIMAKMARPKKRAETILFSHNAVISMRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPRITEEGEYIPLDQIDINVGYDQGLDRIFLVAPLTILHEINEESPLFGINQQDLETSDFEIVVILEGMVEATAMTAQVRSSYLSSEILWGHRFEPVVFEERNQYKVDYSHFHKTYEVPSTPRCSAKDLEDNKSLESGANFCYENELAFISRDEEEQEEDRGERGTELETLSANLNFDQRSYHKESEI", "length": 421 }, "evidence": [ { "id": "F1SKP8", "url": "https://omabrowser.org/oma/group/F1SKP8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P48050-1", "protein_name": "Inward rectifier potassium channel 4", "gene_name": "KCNJ4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MHGHSRNGQAHVPRRKRRNRFVKKNGQCNVYFANLSNKSQRYMADIFTTCVDTRWRYMLMIFSAAFLVSWLFFGLLFWCIAFFHGDLEASPGVPAAGGPAAGGGGAAPVAPKPCIMHVNGFLGAFLFSVETQTTIGYGFRCVTEECPLAVIAVVVQSIVGCVIDSFMIGTIMAKMARPKKRAQTLLFSHHAVISVRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPYMTQEGEYLPLDQRDLNVGYDIGLDRIFLVSPIIIVHEIDEDSPLYGMGKEELESEDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVVFEEKSHYKVDYSRFHKTYEVAGTPCCSARELQESKITVLPAPPPPPSAFCYENELALMSQEEEEMEEEAAAAAAVAAGLGLEAGSKEEAGIIRMLEFGSHLDLERMQASLPLDNISYRRESAI", "length": 445 }, "evidence": [ { "id": "F1SKP8", "url": "https://omabrowser.org/oma/group/F1SKP8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P52189-1", "protein_name": "Inward rectifier potassium channel 4", "gene_name": "Kcnj4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHGHNRNGQAHVPRRKRRNRFVKKNGQCNVYFANLSNKSQRYMADIFTTCVDTRWRYMLMIFSAAFLVSWLFFGLLFWWIAFFHGDLEASPSVPAVGGPGGNGGESPNAPKPCIMHVNGFLGAFLFSVETQTTIGYGFRCVTEECPLAVIAVVVQSIVGCVIDSFMIGTIMAKMARPKKRAQTLLFSHHAVISVRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPYMTQEGEYLPLDQRDLNVGYDIGLDRIFLVSPIIIVHEIDEDSPLYGMGKEELESEDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVVFEEKSHYKVDYSRFHKTYEVAGTPCCSARELQESKITVLPAPPPPPSAFCYENELALMSQEEEEMEEEAAAAAAVAAGLGLEAGSKEEAGIIRMLEFGSHLDLERMQAATLPLDNISYRRESRI", "length": 445 }, "evidence": [ { "id": "F1SKP8", "url": "https://omabrowser.org/oma/group/F1SKP8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P52190-1", "protein_name": "Inward rectifier potassium channel 4", "gene_name": "Kcnj4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHGHSRNGQAHVPRRKRRNRFVKKNGQCNVYFANLSNKSQRYMADIFTTCVDTRWRYMLMIFSAAFLVSWLFFGLLFWCIAFFHGDLEPSPSGPTAGGPGGNGGGAAPTAAKPCIMHVNGFLGAFLFSVETQTTIGYGFRCVTEECPLAVIAVVVQSIVGCVIDSFMIGTIMAKMPRPKKRAQTLLFSHHAVISVRDGKLCLMWRVGNLRKSHIVEAHVRAQLIKPYMTQEGEYLPLDQRDLNVGYDIGLDRIFLVSPIIIVHEIDEDSPLYGMGKEELESEDFEIVVILEGMVEATAMTTQARSSYLASEILWGHRFEPVVFEEKSHYKVDYSRFHKTYEVAGTPCCSARELQESKITVLPAPPPPPSAFCYENELALMSQEEEEMEEEAAAAAAVAAGLGLEAGSKEETGIIRMLEFGSHLDLERMQAATLPLDNISYRRESAI", "length": 446 }, "evidence": [ { "id": "F1SKP8", "url": "https://omabrowser.org/oma/group/F1SKP8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SKP8", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SKP8", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" } ], "pmid": "" }, { "name": "monoatomic ion channel complex", "id": "GO:0034702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034702", "evidence": [ { "database": "UniProtKB", "id": "F1SKP8", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "PDZ domain binding", "id": "GO:0030165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030165", "evidence": [ { "database": "UniProtKB", "id": "F1SKP8", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" } ], "pmid": "" }, { "name": "inward rectifier potassium channel activity", "id": "GO:0005242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005242", "evidence": [ { "database": "UniProtKB", "id": "F1SKP8", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "potassium ion import across plasma membrane", "id": "GO:1990573", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990573", "evidence": [ { "database": "UniProtKB", "id": "F1SKP8", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 438, "end_pos": 440, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29463", "name": "", "equation": "K(+)(in) = K(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29463", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29463" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" }, { "id": "PF17655", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17655" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Inward rectifier potassium channel C-terminal", "eco_id": "ECO_0000259", "start_pos": 187, "end_pos": 359, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKP8" }, { "id": "PF01007", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01007" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Potassium channel inwardly rectifying transmembrane", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 180, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 34, "end_pos": 36 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 438, "end_pos": 440 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKS6-1", "uniprot_ac": "F1SKS6", "uniprot_id": "F1SKS6_PIG", "mass": { "chemical_mass": 97898.0, "monoisotopic_mass": 97898.0 }, "refseq": {}, "gene_names": [ { "name": "ADGRD2", "type": "recommended", "evidence": [ { "id": "F1SKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" } ] } ], "protein_names": [ { "name": "Adhesion G protein-coupled receptor D2", "type": "synonym", "evidence": [ { "id": "F1SKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKS6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKS6", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADGRD2", "url": "https://www.uniprot.org/uniprotkb/F1SKS6", "locus": { "chromosome": "1", "start_pos": 265275248, "end_pos": 265259617, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005591", "url": "https://www.ensembl.org/id/ENSSSCG00000005591" } ] } } ], "crossref": [ { "id": "F1SKS6", "url": "https://alphafold.ebi.ac.uk/entry/F1SKS6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005591", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005591", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00037", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00037", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000203", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000203", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12011", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12011", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12011:SF58", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12011:SF58", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00354", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00354", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01825", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01825", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SKS6", "url": "https://www.uniprot.org/uniprotkb/F1SKS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKS6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPWCYCLLLTLLITSLSGTPSNSPGESRNPWVTAPLAPGEVVETANKVCKFSGQRLSWWQAQESCEQRFGHLVLPPPDGVLAPRLPNPIWVGQRESPLRRPPQRRAHTTAALRFGERTADRAARLRKPLPALGALTACAHVQWDAASPDTAALFSLAVPALANALQLRAFAEPGGAVHLALVVRGHHAPFRAAFRADGHWHHVCATWEQLGGRWALFADGRRRAGARGLGAGHPLPPGGVLVLGQDQDSLGGGFSARDAFSGNLTDFHLWARTLSPVQLNRARSCAPPLGGLLFRWDLGALDVTPSLLPPVWVRLFCPVPSEECPTWDPGPRTESPLLCLQQLPFLCCYGTENYLRLQEAQSWSGQDVISQVNALANATVLFPDPLSEEYGDLSPAEASSFLGILERVLAKEAAPLGPAALLAVVQFLKRVAALGAWESEPGTGPWEQLGQAVVSVASLVLEEPLASAWLKVGEVVGGPMALVASVQRLAPLLSSVLTSERPRMHFQHRQAGLSGVTVIHSWFSSSVFKHMPGAPGQGPPAPDSSEETSRMQRFLSTQVGSAIISSDVWDEAGEVNTAVTFHLHRVPLSWFGAPPPTPLPPHPNIYSGGSWATSGCSVTALYRDSTACFCNHSTNFAILLQVYDVQRSPEDESLLRTLSFVGCGVSFCALATTFLLFLAAGVPKSERATVHKNLTFSLASAEGFLMASEWAKDNEVACVAVTAVMHLLFLVAFSWMLVEGLLLWSRVVAVSMRPGPRMRLYYATGWGVPVVIVAITLATSPQDYVATGHCWLNVHTDTIWAFVGPVLFVLTANTCILVRVVIVTVSSARRRARMLSPQPCVQQQLRIQMWATVKPVLVLLPVLGLTWLVGVLVHLSPAWAYAAVGLNSFQVLPGHTLELRGPGLSGD", "length": 908, "header": "tr|F1SKS6-1|F1SKS6_PIG Isoform 1 of Adhesion G protein-coupled receptor D2 OS=Sus scrofa OX=9823 GN=ADGRD2 PE=3 SV=5 CANONICAL=F1SKS6-1" }, "isoforms": [ { "isoform_ac": "F1SKS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SKS6/entry#F1SKS6-1", "sequence": { "sequence": "MAPWCYCLLLTLLITSLSGTPSNSPGESRNPWVTAPLAPGEVVETANKVCKFSGQRLSWWQAQESCEQRFGHLVLPPPDGVLAPRLPNPIWVGQRESPLRRPPQRRAHTTAALRFGERTADRAARLRKPLPALGALTACAHVQWDAASPDTAALFSLAVPALANALQLRAFAEPGGAVHLALVVRGHHAPFRAAFRADGHWHHVCATWEQLGGRWALFADGRRRAGARGLGAGHPLPPGGVLVLGQDQDSLGGGFSARDAFSGNLTDFHLWARTLSPVQLNRARSCAPPLGGLLFRWDLGALDVTPSLLPPVWVRLFCPVPSEECPTWDPGPRTESPLLCLQQLPFLCCYGTENYLRLQEAQSWSGQDVISQVNALANATVLFPDPLSEEYGDLSPAEASSFLGILERVLAKEAAPLGPAALLAVVQFLKRVAALGAWESEPGTGPWEQLGQAVVSVASLVLEEPLASAWLKVGEVVGGPMALVASVQRLAPLLSSVLTSERPRMHFQHRQAGLSGVTVIHSWFSSSVFKHMPGAPGQGPPAPDSSEETSRMQRFLSTQVGSAIISSDVWDEAGEVNTAVTFHLHRVPLSWFGAPPPTPLPPHPNIYSGGSWATSGCSVTALYRDSTACFCNHSTNFAILLQVYDVQRSPEDESLLRTLSFVGCGVSFCALATTFLLFLAAGVPKSERATVHKNLTFSLASAEGFLMASEWAKDNEVACVAVTAVMHLLFLVAFSWMLVEGLLLWSRVVAVSMRPGPRMRLYYATGWGVPVVIVAITLATSPQDYVATGHCWLNVHTDTIWAFVGPVLFVLTANTCILVRVVIVTVSSARRRARMLSPQPCVQQQLRIQMWATVKPVLVLLPVLGLTWLVGVLVHLSPAWAYAAVGLNSFQVLPGHTLELRGPGLSGD", "length": 908, "header": "tr|F1SKS6-1|F1SKS6_PIG Isoform 1 of Adhesion G protein-coupled receptor D2 OS=Sus scrofa OX=9823 GN=ADGRD2 PE=3 SV=5 CANONICAL=F1SKS6-1" }, "locus": { "chromosome": "1", "start_pos": 265275245, "end_pos": 265260983, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006147.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006147.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005988.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005988.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 20, "start_aa": "Thr", "end_pos": 20, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr20", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 598, "start_aa": "Thr", "end_pos": 598, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr598", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKS6", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SKS6", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SKS6", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "F1SKS6", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" } ], "pmid": "" }, { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SKS6", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 632, "end_pos": 634, "annotation": "n_glycosylation_sequon" }, { "start_pos": 694, "end_pos": 696, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKS6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 908, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKS6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKS6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" }, { "id": "PS50261", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50261" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 2 profile 2", "eco_id": "ECO_0000259", "start_pos": 656, "end_pos": 891, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" }, { "id": "PS50221", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50221" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GAIN-B", "eco_id": "ECO_0000259", "start_pos": 481, "end_pos": 647, "start_aa": "Met", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKS6" }, { "id": "PS51828", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51828" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pentraxin (PTX)", "eco_id": "ECO_0000259", "start_pos": 109, "end_pos": 318, "start_aa": "Thr", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 20, 598 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 264, "end_pos": 266 }, { "start_pos": 378, "end_pos": 380 }, { "start_pos": 632, "end_pos": 634 }, { "start_pos": 694, "end_pos": 696 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKT8-1", "uniprot_ac": "F1SKT8", "uniprot_id": "F1SKT8_PIG", "mass": { "chemical_mass": 73470.0, "monoisotopic_mass": 73470.0 }, "refseq": { "ac": "NP_001231350", "name": "peptidylprolyl isomerase domain and WD repeat-containing protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231350" }, "gene_names": [ { "name": "PPWD1", "type": "recommended", "evidence": [ { "id": "F1SKT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKT8" } ] }, { "name": "PPWD1", "type": "synonym", "evidence": [ { "id": "NP_001231350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231350" } ] } ], "protein_names": [ { "name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1SKT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKT8/entry#names_and_taxonomy" } ] }, { "name": "5.2.1.8", "type": "synonym", "evidence": [ { "id": "F1SKT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKT8/entry#names_and_taxonomy" } ] }, { "name": "peptidylprolyl isomerase domain and WD repeat-containing protein 1", "type": "synonym", "evidence": [ { "id": "NP_001231350", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231350" } ] } ], "function": [ { "annotation": "PPIase that catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides and may therefore assist protein folding. May be involved in pre-mRNA splicing.", "evidence": [ { "database": "UniProtKB", "id": "F1SKT8", "url": "https://www.uniprot.org/uniprotkb/F1SKT8#function" }, { "database": "UniProtKB", "id": "ARBA00057001", "url": "https://www.uniprot.org/uniprotkb/ARBA00057001#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKT8", "url": "https://www.uniprot.org/uniprotkb/F1SKT8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPWD1", "url": "https://www.uniprot.org/uniprotkb/F1SKT8", "locus": { "chromosome": "16", "start_pos": 44101428, "end_pos": 44080636, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016945", "url": "https://www.ensembl.org/id/ENSSSCG00000016945" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016945", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016945", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01927", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01927", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512505", "url": "https://www.ncbi.nlm.nih.gov/gene/100512505", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512505", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512505", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GMVEYWR", "url": "https://omabrowser.org/oma/group/GMVEYWR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKT8", "url": "https://www.orthodb.org/?gene=F1SKT8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45625", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45625", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45625:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45625:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00160", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00160", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231350", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231350", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16237", "url": "https://www.rhea-db.org/rhea/16237", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SKT8", "url": "https://www.uniprot.org/uniprotkb/F1SKT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKT8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKT8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAESGSDSQLSKRRRRVPEEPEKTELSERELAVAVAVTQENEEESEERWVGPLPVEATLAKKRKVLEFERVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGIIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPIYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSICFSPDGKKIATIGSDRKVRIFRFLTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLINIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIEMKASENPVLQNIQADPTVVCTSFKKNRFYMFTKREPEDTKSADSDRDVFNERPSKEEVMAATQAEGPKRVSDSAIIHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK", "length": 646, "header": "tr|F1SKT8-1|F1SKT8_PIG Isoform 1 of Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=PPWD1 PE=1 SV=1 CANONICAL=F1SKT8-1" }, "isoforms": [ { "isoform_ac": "F1SKT8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKT8/entry#F1SKT8-1", "sequence": { "sequence": "MAAESGSDSQLSKRRRRVPEEPEKTELSERELAVAVAVTQENEEESEERWVGPLPVEATLAKKRKVLEFERVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGIIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPIYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSICFSPDGKKIATIGSDRKVRIFRFLTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLINIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIEMKASENPVLQNIQADPTVVCTSFKKNRFYMFTKREPEDTKSADSDRDVFNERPSKEEVMAATQAEGPKRVSDSAIIHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK", "length": 646, "header": "tr|F1SKT8-1|F1SKT8_PIG Isoform 1 of Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Sus scrofa OX=9823 GN=PPWD1 PE=1 SV=1 CANONICAL=F1SKT8-1" }, "locus": { "chromosome": "16", "start_pos": 44100650, "end_pos": 44080648, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018453.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018453.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017953.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017953.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 599, "start_aa": "Thr", "end_pos": 599, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr599", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKT8", "url": "https://www.uniprot.org/uniprotkb/F1SKT8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512505", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512505", "resource": "KEGG Pathway" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZVP6-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "Ppwd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAEIGSDSQLKRRRRRDPEGSEKTELSEREPALAVEGREENDDENEERWVGPLPVEATLAKKRKVLEFERVYLENLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGIIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHVSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPHEYKFPKTVNWEYKTDTDLYEFAKCKAYPTSICFSPDGKKIATIGSDRKVRIFRFLTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLINIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAAATIEMKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKSADSDRDVFNEKPSKEEVMAATQAEGPKRVSDSAIVHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK", "length": 646 }, "evidence": [ { "id": "F1SKT8", "url": "https://omabrowser.org/oma/group/F1SKT8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NAJ2-1", "protein_name": "peptidylprolyl isomerase", "gene_name": "PPWD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASSEPERKRRASGAAENEEEDEEDGERWVGPLPGEAAQTKKRRVLEFEHVYLENLPCASMYERSYMHRDVITHVACTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYSPGQCEWVYCPGDAISSVATSEKTTGKIFIYDGRGNNQPLHVFDKLHTSSLTQIRLNPVYKVVVSSDKSGMIEYWTGTPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPSSISFSPDGKKMATLGSDRKVRIFRFLTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLINIIFDETGHFVLYGTMLGIKVINVETNRCIRILGKQENIRVMQLALFQGVAKKHRAAITIEMKASENPVLQNIQADPTVICTAFKKNRFYMFTKREPEDTKSADSDRDVFNEKPSKEEVMAATQAEGPKRVSDSAIIHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHIFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGPNTNGSQFFITVVPTPWLDNKHSVFGRVTKGMEVVQRISNVKVNPKTDKPYEDISIINITVK", "length": 625 }, "evidence": [ { "id": "F1SKT8", "url": "https://omabrowser.org/oma/group/F1SKT8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q29RZ2-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAECGSDSQPRRRRRRDPEEPGKTELSAREPVVAVPQENEEENEERWVGPLPVEATLAKKRKVLEFEKVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPYEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSICFSPDGKKLATIGSDRKVRIFRFLTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLINIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIEMKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKSADSDRDVFNEKPSKEEVMAATQAEGPKRVSDSAIIHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK", "length": 644 }, "evidence": [ { "id": "F1SKT8", "url": "https://omabrowser.org/oma/group/F1SKT8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q55F01-1", "protein_name": "peptidylprolyl isomerase", "gene_name": "ppwd1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSENNENEEQLNKKRETSTSNDEDVDKINNKKLKSKTKELPFEQLYLDRLPNSLMYEKSFMHKDICTFIAVSKSDFIVSTDILGYVKFWKKQPIGIEFVKTFKSHVGPVSSLSISFDGQLLCTVGFDKNVRIFDIKNFDLINSFKVPFLPLTCEWVYGVNSSKTLIAISSRESSIINLYDSKSDDTSGKPLHIVELHNKSVHLIKFNQQFQSVISCDIGGSVEYWDIEEPFDQPTNVNFQMKLETDLYDFEKQSTLPISLEISGDGKYLSTMGRDKKIRIFNYKSGKLYRVYDESFAVLQQIQKTEDPIYHLDYADFGRRLAIEKEIDTMYDQFLNNITSKQSPPLNSILFDESNNFLIYSTLVGIKFVNIKTNKVVRVLGKIENSTRFLGLSLYQGKNEGDVTLGTKKRDTENDPTLFCLSFKKQRFYMFTRREPEDNDNPDYGRDVFNEKVTKDEQLLIQNAQRQLPRNAIIHTSLGDIHIMLYPDECPKTVENFTTHSKNNYYNGVIFHRVIKGFMIQTGDPQGTGYGGDSIWKKEFEDEFNRNLRHDRPFTLSMANAGPNTNGSQFFITTVPVTRLDNKHTVFGRVYKGTEVVTAIEKSKTDQDDKPLNDISILNIKITQDVPLEFQNKKI", "length": 635 }, "evidence": [ { "id": "F1SKT8", "url": "https://omabrowser.org/oma/group/F1SKT8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8CEC6-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "Ppwd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATESGSDSQLRRRRRRDPEGSEKTELSEREPALAVAGSEENDDENEERWVGPLPVEATLAKKRKVLEFERVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHVSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSICFSPDGKKIATIGSDRKVRIFRFLTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLVNIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAAATIEMKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKTADSDRDVFNEKPSKEEVMAATQAEGPKRVSDSAIVHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK", "length": 646 }, "evidence": [ { "id": "F1SKT8", "url": "https://omabrowser.org/oma/group/F1SKT8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8W4D0-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase CYP71", "gene_name": "CYP71", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEEESKNGGTTIPTEELAVVAVPPVVEEEEPMVGPGPAPRGKRKRPLQFEQAYLDSLPSANMYEKSYMHRDVVTHVAVSAAEFFISGSMDGHLKFWKKKGVGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDHAVKIYDVVNYDMMAMIRLPYIPGAVEWVYKQGDVKAKLAVSDRDSLFVHIYDPRSGSNEPIASKEIHMNPIKVMKYNPVSDTMISGDTKGIIEYWSATTLQFPEDEVNFKLKSDTNLFEIIKCKTTISAIEVSPDGKQFSITAPDRRIRVFWFRTGKLRRVYDESLVVAQDLQRSDAPLYRLEAIDFGRRMAVEKELEKTESAPQPNAVFDESSNFLIYATFLGIKVINLHTNTVARILGKVESNERYLRVALYQGDQGGKKVRKIPAAAANVNESKEPLTDPTILCCAFKKHRIYMFSRREPEEPEDASQGRDVFNEKPAADELMSVSDIGNSATTSLPENVIMHTTLGDIHMKLYPEECPKTVENFTTHCRNGYYDNHLFHRVIRGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKNDRPYQDVKILNVTVPKS", "length": 631 }, "evidence": [ { "id": "F1SKT8", "url": "https://omabrowser.org/oma/group/F1SKT8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96BP3-1", "protein_name": "Peptidylprolyl isomerase domain and WD repeat-containing protein 1", "gene_name": "PPWD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAESGSDFQQRRRRRRDPEEPEKTELSERELAVAVAVSQENDEENEERWVGPLPVEATLAKKRKVLEFERVYLDNLPSASMYERSYMHRDVITHVVCTKTDFIITASHDGHVKFWKKIEEGIEFVKHFRSHLGVIESIAVSSEGALFCSVGDDKAMKVFDVVNFDMINMLKLGYFPGQCEWIYCPGDAISSVAASEKSTGKIFIYDGRGDNQPLHIFDKLHTSPLTQIRLNPVYKAVVSSDKSGMIEYWTGPPHEYKFPKNVNWEYKTDTDLYEFAKCKAYPTSVCFSPDGKKIATIGSDRKVRIFRFVTGKLMRVFDESLSMFTELQQMRQQLPDMEFGRRMAVERELEKVDAVRLINIVFDETGHFVLYGTMLGIKVINVETNRCVRILGKQENIRVMQLALFQGIAKKHRAATTIEMKASENPVLQNIQADPTIVCTSFKKNRFYMFTKREPEDTKSADSDRDVFNEKPSKEEVMAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK", "length": 646 }, "evidence": [ { "id": "F1SKT8", "url": "https://omabrowser.org/oma/group/F1SKT8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SKT8", "url": "https://www.uniprot.org/uniprotkb/F1SKT8" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F1SKT8", "url": "https://www.uniprot.org/uniprotkb/F1SKT8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "F1SKT8", "url": "https://www.uniprot.org/uniprotkb/F1SKT8" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F1SKT8", "url": "https://www.uniprot.org/uniprotkb/F1SKT8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptidyl-prolyl cis-trans isomerase activity", "id": "GO:0003755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003755", "evidence": [ { "database": "UniProtKB", "id": "F1SKT8", "url": "https://www.uniprot.org/uniprotkb/F1SKT8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 588, "end_pos": 590, "annotation": "n_glycosylation_sequon" }, { "start_pos": 642, "end_pos": 644, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16237", "name": "", "equation": "[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16237", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16237" } ] }, { "id": "R-SSC-9770141", "name": "Formation of the Spliceosomal C* complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-5688092", "R-SSC-5688093", "R-SSC-72073", "R-SSC-9769591", "R-SSC-9769593", "R-SSC-9769594", "R-SSC-9769596", "R-SSC-9769598", "R-SSC-9769599", "R-SSC-9769601" ], "output_participant_list": [ "R-SSC-72060", "R-SSC-8867898", "R-SSC-9770419", "R-SSC-9770425", "R-SSC-9770427", "R-SSC-9770428", "R-SSC-9770430" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9770141", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770141" } ] }, { "id": "R-SSC-9770236", "name": "Formation of the Spliceosomal P complex and exon ligation", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-9769588", "R-SSC-9769590", "R-SSC-9769602" ], "output_participant_list": [ "R-SSC-6791189", "R-SSC-8849139", "R-SSC-8952113", "R-SSC-9769562" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9770236", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770236" } ] }, { "id": "R-SSC-9770847", "name": "Spliceosomal P complex dissociates yielding the intron-containing complex (ILS) and the spliced mRNP (new)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-5688097", "R-SSC-8869310", "R-SSC-8869311", "R-SSC-9770846" ], "output_participant_list": [ "R-SSC-3900136", "R-SSC-6814858", "R-SSC-8865888", "R-SSC-8865956", "R-SSC-8952110", "R-SSC-9769561", "R-SSC-8867893", "R-SSC-9769592" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9770847", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770847" } ] }, { "id": "R-SSC-9794542", "name": "Formation of the Spliceosomal C complex containing intron lariat", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9794542", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9794542" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-3900136", "participant_name": "DDX5 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000043632", "database": "ENSEMBL", "url": "" }, { "id": "87226", "database": "VGNC", "url": "" }, { "id": "A0A287AHW6", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000032092", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000038465", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-5688092", "participant_name": "DHX8 [nucleoplasm]", "crossref": [ { "id": "F1S1H3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000017378", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000018412", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000018917", "database": "ENSEMBL", "url": "" }, { "id": "87298", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-5688093", "participant_name": "PRPF18 [nucleoplasm]", "crossref": [ { "id": "A0A4X1VY37", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000026354", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000027625", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000024330", "database": "ENSEMBL", "url": "" }, { "id": "NP_001231788.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-5688097", "participant_name": "DHX15 [nucleoplasm]", "crossref": [ { "id": "F1S5A8", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000008756", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000009333", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000009580", "database": "ENSEMBL", "url": "" }, { "id": "87286", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-6791189", "participant_name": "MTREX [nucleoplasm]", "crossref": [ { "id": "F1SLL6", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000017920", "database": "ENSEMBL", "url": "" }, { "id": "90470", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000018417", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000016911", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-6814858", "participant_name": "SRRT [nucleoplasm]", "crossref": [ { "id": "I3LI05", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000023704", "database": "ENSEMBL", "url": "" }, { "id": "93471", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000024767", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000024789", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-72060", "participant_name": "DHX38 [nucleoplasm]", "crossref": [ { "id": "F1S3A8", "database": "UniProt", "url": "" }, { "id": "XP_020949516.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000002966", "database": "ENSEMBL", "url": "" }, { "id": "87294", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000003045", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000002748", "database": "ENSEMBL", "url": "" }, { "id": "XP_020949515.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-72073", "participant_name": "SLU7 [nucleoplasm]", "crossref": [ { "id": "F1RR54", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000017033", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000018045", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000018545", "database": "ENSEMBL", "url": "" }, { "id": "XP_003134141.1", "database": "RefSeq", "url": "" }, { "id": "93214", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-8849139", "participant_name": "DDX39B [nucleoplasm]", "crossref": [ { "id": "XP_005665850.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000001487", "database": "ENSEMBL", "url": "" }, { "id": "NP_001005157.1", "database": "RefSeq", "url": "" }, { "id": "Q29024", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000001529", "database": "ENSEMBL", "url": "" }, { "id": "XP_005665851.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCG00000001400", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-8865888", "participant_name": "SRRM2 [nucleoplasm]", "crossref": [ { "id": "ENSSSCG00000023304", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000051053", "database": "ENSEMBL", "url": "" }, { "id": "93468", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000041895", "database": "ENSEMBL", "url": "" }, { "id": "A0A287ADD0", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-8865956", "participant_name": "CWC22 [nucleoplasm]", "crossref": [ { "id": "XP_003133562.2", "database": "RefSeq", "url": "" }, { "id": "XP_013839769.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000016961", "database": "ENSEMBL", "url": "" }, { "id": "A0A4X1TWU8", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000016008", "database": "ENSEMBL", "url": "" }, { "id": "XP_005672046.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000017430", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-8867893", "participant_name": "PPWD1 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000017953", "database": "ENSEMBL", "url": "" }, { "id": "NP_001231350.1", "database": "RefSeq", "url": "" }, { "id": "F1SKT8", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000016945", "database": "ENSEMBL", "url": "" }, { "id": "91766", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000018453", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-8867898", "participant_name": "CWC25 [nucleoplasm]", "crossref": [ { "id": "ENSSSCT00000053706", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000021478", "database": "ENSEMBL", "url": "" }, { "id": "87096", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000032040", "database": "ENSEMBL", "url": "" }, { "id": "A0A286ZKR9", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-8869310", "participant_name": "TFIP11 [nucleoplasm]", "crossref": [ { "id": "Q06AK6", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000009962", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000010632", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000010917", "database": "ENSEMBL", "url": "" }, { "id": "XP_020927865.1", "database": "RefSeq", "url": "" }, { "id": "XP_020927864.1", "database": "RefSeq", "url": "" }, { "id": "NP_001070682.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-8869311", "participant_name": "GCFC2 [nucleoplasm]", "crossref": [ { "id": "I3LDF5", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000021287", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000022086", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000031635", "database": "ENSEMBL", "url": "" }, { "id": "XP_020942970.1", "database": "RefSeq", "url": "" }, { "id": "88382", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-8952110", "participant_name": "PPIL3 [nucleoplasm]", "crossref": [ { "id": "XP_013839835.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000017525", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000016096", "database": "ENSEMBL", "url": "" }, { "id": "XP_001926016.1", "database": "RefSeq", "url": "" }, { "id": "XP_005672124.1", "database": "RefSeq", "url": "" }, { "id": "103073", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000017053", "database": "ENSEMBL", "url": "" }, { "id": "XP_001925960.1", "database": "RefSeq", "url": "" }, { "id": "F2Z5T7", "database": "UniProt", "url": "" }, { "id": "XP_005672126.1", "database": "RefSeq", "url": "" }, { "id": "XP_005672125.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-8952113", "participant_name": "PPIL4 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000023314", "database": "ENSEMBL", "url": "" }, { "id": "91699", "database": "VGNC", "url": "" }, { "id": "I3LGX0", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000024741", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000028867", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769561", "participant_name": "CCDC12 [nucleoplasm]", "crossref": [ { "id": "A0A8W4FDT6", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000077421", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000093297", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000011329", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769562", "participant_name": "PPIL2 [nucleoplasm]", "crossref": [ { "id": "ENSSSCG00000010083", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000056926", "database": "ENSEMBL", "url": "" }, { "id": "91698", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000040807", "database": "ENSEMBL", "url": "" }, { "id": "A0A287AAH2", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-9769588", "participant_name": "C1H9orf78 [nucleoplasm]", "crossref": [ { "id": "F1RQE0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000030426", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000022510", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000024953", "database": "ENSEMBL", "url": "" }, { "id": "85975", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769590", "participant_name": "LENG1 [nucleoplasm]", "crossref": [ { "id": "F1RNH2", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000003265", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000003541", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000003626", "database": "ENSEMBL", "url": "" }, { "id": "XP_003127463.2", "database": "RefSeq", "url": "" }, { "id": "89680", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769591", "participant_name": "CACTIN [nucleoplasm]", "crossref": [ { "id": "A0A287BJU2", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000032085", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000056347", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000037250", "database": "ENSEMBL", "url": "" }, { "id": "86131", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769592", "participant_name": "PPIG [nucleoplasm]", "crossref": [ { "id": "XP_005671972.1", "database": "RefSeq", "url": "" }, { "id": "XP_020931930.1", "database": "RefSeq", "url": "" }, { "id": "XP_005671971.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000047092", "database": "ENSEMBL", "url": "" }, { "id": "XP_020931929.1", "database": "RefSeq", "url": "" }, { "id": "A0A4X1VJX6", "database": "UniProt", "url": "" }, { "id": "XP_020931927.1", "database": "RefSeq", "url": "" }, { "id": "XP_005671973.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCG00000031123", "database": "ENSEMBL", "url": "" }, { "id": "XP_001926896.1", "database": "RefSeq", "url": "" }, { "id": "XP_020931928.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000066047", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769593", "participant_name": "SDE2 [nucleoplasm]", "crossref": [ { "id": "A0A8W4FFC9", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000010858", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000078134", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000092221", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769594", "participant_name": "PRKRIP1 [nucleoplasm]", "crossref": [ { "id": "A0A5G2QNT3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000042324", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000065720", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000069793", "database": "ENSEMBL", "url": "" }, { "id": "XP_005661993.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9769596", "participant_name": "STEEP1 [nucleoplasm]", "crossref": [ { "id": "F2Z566", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000012622", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000013420", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000013801", "database": "ENSEMBL", "url": "" }, { "id": "87113", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769598", "participant_name": "FAM32A [nucleoplasm]", "crossref": [ { "id": "A0A4X1UYF2", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000013855", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000014729", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000015134", "database": "ENSEMBL", "url": "" }, { "id": "NP_001230816.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9769599", "participant_name": "FAM50A [nucleoplasm]", "crossref": [ { "id": "A0A5G2QKU3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000025303", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000064609", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000089389", "database": "ENSEMBL", "url": "" }, { "id": "87972", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769601", "participant_name": "DDX41 [nucleoplasm]", "crossref": [ { "id": "A0A287AWY6", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000032642", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000048662", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000059325", "database": "ENSEMBL", "url": "" }, { "id": "87221", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769602", "participant_name": "NKAP [nucleoplasm]", "crossref": [ { "id": "A0A5G2RJX5", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000012613", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000072270", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000085170", "database": "ENSEMBL", "url": "" }, { "id": "90756", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9770419", "participant_name": "GPATCH1 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000003085", "database": "ENSEMBL", "url": "" }, { "id": "XP_020949947.1", "database": "RefSeq", "url": "" }, { "id": "F1RNW7", "database": "UniProt", "url": "" }, { "id": "88573", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000003166", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000002865", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9770425", "participant_name": "WDR70 [nucleoplasm]", "crossref": [ { "id": "ENSSSCT00000018344", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000016846", "database": "ENSEMBL", "url": "" }, { "id": "94937", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000017848", "database": "ENSEMBL", "url": "" }, { "id": "F1SN94", "database": "UniProt", "url": "" }, { "id": "XP_020932620.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9770427", "participant_name": "DHX35 [nucleoplasm]", "crossref": [ { "id": "95678", "database": "VGNC", "url": "" }, { "id": "ENSSSCG00000007352", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000063112", "database": "ENSEMBL", "url": "" }, { "id": "A0A287B5Q0", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000051779", "database": "ENSEMBL", "url": "" }, { "id": "XP_001929057.3", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9770428", "participant_name": "NSRP1 [nucleoplasm]", "crossref": [ { "id": "A0A8D1TUT0", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000018853", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000019367", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000017795", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9770430", "participant_name": "YJU2 [nucleoplasm]", "crossref": [ { "id": "ENSSSCG00000013499", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000072636", "database": "ENSEMBL", "url": "" }, { "id": "95033", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000068755", "database": "ENSEMBL", "url": "" }, { "id": "A0A5G2QX80", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-9770846", "participant_name": "CWF19L2 [nucleoplasm]", "crossref": [ { "id": "A0A5K1V0N0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000028201", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000028057", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000026318", "database": "ENSEMBL", "url": "" }, { "id": "96726", "database": "VGNC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKT8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKT8" }, { "id": "PS50072", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50072" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PPIase cyclophilin-type", "eco_id": "ECO_0000259", "start_pos": 490, "end_pos": 645, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 599 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 588, "end_pos": 590 }, { "start_pos": 642, "end_pos": 644 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKU9-1", "uniprot_ac": "F1SKU9", "uniprot_id": "F1SKU9_PIG", "mass": { "chemical_mass": 35213.0, "monoisotopic_mass": 35213.0 }, "refseq": {}, "gene_names": [ { "name": "OR5C1", "type": "recommended", "evidence": [ { "id": "F1SKU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKU9" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SKU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKU9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SKU9", "url": "https://www.uniprot.org/uniprotkb/F1SKU9#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKU9", "url": "https://www.uniprot.org/uniprotkb/F1SKU9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR5C1", "url": "https://www.uniprot.org/uniprotkb/F1SKU9", "locus": { "chromosome": "1", "start_pos": 263727156, "end_pos": 263726194, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005578", "url": "https://www.ensembl.org/id/ENSSSCG00000005578" } ] } } ], "crossref": [ { "id": "F1SKU9", "url": "https://alphafold.ebi.ac.uk/entry/F1SKU9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15945", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15945", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FVHTTLT", "url": "https://omabrowser.org/oma/group/FVHTTLT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SKU9", "url": "https://www.uniprot.org/uniprotkb/F1SKU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKU9-1", "url": "https://www.uniprot.org/uniprotkb/F1SKU9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPENFTWTRGAPAEFILLGVTDRWDLRVTLFLVFLPIYLVSLLGNVGMMLLICVDAQLHTPMYFFLANLSLLDACYSSAIAPKMLVDLLLPLATIPYAACALQMFVFAGLADAEWCLLAAMAYDRYVAIGNPLLYTTAMSPRLCLALLGASGLGGAVSAVVHTTFTFRLSFCGSREVNSFFCDIPPLLAICCNDTSLNELLLFTVCGFIQTATVLAIAVSYGLIVRAVMHMRSVQGRWRAASTCGSHLTAVAMLYGTLTFMYLRPSSSYALDSDKMASVFYTLVIPALNPLIYSLRNKEVKEALRRTRSRCCCPRRVHG", "length": 320, "header": "tr|F1SKU9-1|F1SKU9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR5C1 PE=3 SV=3 CANONICAL=F1SKU9-1" }, "isoforms": [ { "isoform_ac": "F1SKU9-1", "url": "https://www.uniprot.org/uniprotkb/F1SKU9/entry#F1SKU9-1", "sequence": { "sequence": "MRPENFTWTRGAPAEFILLGVTDRWDLRVTLFLVFLPIYLVSLLGNVGMMLLICVDAQLHTPMYFFLANLSLLDACYSSAIAPKMLVDLLLPLATIPYAACALQMFVFAGLADAEWCLLAAMAYDRYVAIGNPLLYTTAMSPRLCLALLGASGLGGAVSAVVHTTFTFRLSFCGSREVNSFFCDIPPLLAICCNDTSLNELLLFTVCGFIQTATVLAIAVSYGLIVRAVMHMRSVQGRWRAASTCGSHLTAVAMLYGTLTFMYLRPSSSYALDSDKMASVFYTLVIPALNPLIYSLRNKEVKEALRRTRSRCCCPRRVHG", "length": 320, "header": "tr|F1SKU9-1|F1SKU9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR5C1 PE=3 SV=3 CANONICAL=F1SKU9-1" }, "locus": { "chromosome": "1", "start_pos": 263727153, "end_pos": 263726194, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006131.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006131.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005972.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005972.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKU9", "url": "https://www.uniprot.org/uniprotkb/F1SKU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3ZLV0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5c1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSENFTWSRVTPAEFILLGITNRWDLRVTLFLIFLPIYLMSLLGNVGMVLLIRIDARLHTPMYFFLANLSLLDAFYSSAIGPKMLVDLLLSRATIPYAACALQMFVFAGLADAECCLLAVMAYDRYVAIGNPLLYTTVMSPRLCLALLGASGLGGAVSAFVHTTFTFRLSFCGSLEVNSFFCDIPPLLAISCNDTSLNELLLFAVCGFIQTATVLAIAVSYGFIAGAVIRMQSVEGRRRAASTCGSHLTAVAILYGTLIFMYLRPSSSYALDTDKMASVFYTLVIPALNPLIYSLRNKEVKEAFRRTCHRFCCSGRSTSDWPQEAP", "length": 327 }, "evidence": [ { "id": "F1SKU9", "url": "https://omabrowser.org/oma/group/F1SKU9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MRD3-1", "protein_name": "Olfactory receptor", "gene_name": "OR5C1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTPENFTWTWGSPAEFILLGITDRWDLRLTLFLIFLPVYLVSLLGNAGMVLLIHIDAQLHTPMYFFLANLSLLDACYSSAIGPKMLVDQLLPRTSIPYAACVLQMFLFTGLADAECCLLAAMAYDRYVAIGNPLLYTTATSRRLCLVLLGASGLGGAVSAVVHTTFTFRLSFCGSREVNSFFCDIPPLLAISCNDTSLNELLLFAVCGFIQTATVSAIAVSYGFIAGAVIRMRSAESRWRAASTCGSHLTGVAMLYGTLIFMYLRPSSSYALDTDKMASVFYTLVIPALNPLIYSLRNKEVKEALRRTWSRCCGPRRRHQ", "length": 320 }, "evidence": [ { "id": "F1SKU9", "url": "https://omabrowser.org/oma/group/F1SKU9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HLG5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100773143", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSENFTQSRVPPAEFILLGITNRWDLRVPLFLILLPIYLVSLLGNVGMVLLIRVDARLHTPMYFFLANLSLMDAFYSSAIGPKMLVDLLLSHATIPYVACALQMFVFAGLADAECCLLAVMAYDRYVAIGNPLLYTTVMSPHLCLALLGASGLGGAVSAFVHTAFTFRLSFCSSLEVNSFFCDIPPLLAISCSDTSLNELLLFAVCGFIQTVTVLAIMVSYGFIAGAVIRMQSAEGRRRAASTCGSHLTAVAILYGTLIFMYLRPSSSYALDTDKMASVFYTLVIPALNPLIYSLRNKEVKEALRRSWNRYCCPRQSTSDWSQEMG", "length": 327 }, "evidence": [ { "id": "F1SKU9", "url": "https://omabrowser.org/oma/group/F1SKU9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8NGR4-1", "protein_name": "Olfactory receptor 5C1", "gene_name": "OR5C1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNSENLTRAAVAPAEFVLLGITNRWDLRVALFLTCLPVYLVSLLGNMGMALLIRMDARLHTPMYFFLANLSLLDACYSSAIGPKMLVDLLLPRATIPYTACALQMFVFAGLADTECCLLAAMAYDRYVAIRNPLLYTTAMSQRLCLALLGASGLGGAVSAFVHTTLTFRLSFCRSRKINSFFCDIPPLLAISCSDTSLNELLLFAICGFIQTATVLAITVSYGFIAGAVIHMRSVEGSRRAASTGGSHLTAVAMMYGTLIFMYLRPSSSYALDTDKMASVFYTLVIPSLNPLIYSLRNKEVKEALRQTWSRFHCPGQGSQ", "length": 320 }, "evidence": [ { "id": "F1SKU9", "url": "https://omabrowser.org/oma/group/F1SKU9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VF22-1", "protein_name": "Olfactory receptor", "gene_name": "Or5c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSENFTRSRVMPAEFILLGITNRWDMRVTLFLIFLPIYLVSLLGNVGMVLLIRIDARLHTPMYFFLANLSLLDAFYSSAIGPKMLVDLLLSRATIPYVACALQMFVFAGLADAECCLLAVMAYDRYVAIGNPLLYTTVMSPRLCLALLGASGLGGAVSAFVHTTFTFRLSFCGSLEVNSFFCDIPPLLAISCNDTSLNELLLFAVCGFIQTTTVLAIAVSYGFIAVAVIRMQSAEGRRRAASTCGSHLTAVSILYGTLIFMYLRPSSSYALDTDKMASVFYTLVIPALNPLIYSLRNKEVKEAFQRTWHRFCCPGRSTRDWPQEAH", "length": 327 }, "evidence": [ { "id": "F1SKU9", "url": "https://omabrowser.org/oma/group/F1SKU9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SKU9", "url": "https://www.uniprot.org/uniprotkb/F1SKU9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SKU9", "url": "https://www.uniprot.org/uniprotkb/F1SKU9" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SKU9", "url": "https://www.uniprot.org/uniprotkb/F1SKU9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SKU9", "url": "https://www.uniprot.org/uniprotkb/F1SKU9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKU9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 320, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKU9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKU9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKU9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 294, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 194, "end_pos": 196 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 69, "end_pos": 71 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKV1-1", "uniprot_ac": "F1SKV1", "uniprot_id": "F1SKV1_PIG", "mass": { "chemical_mass": 48392.0, "monoisotopic_mass": 48392.0 }, "refseq": { "ac": "XP_005660471", "name": "zinc finger and BTB domain-containing protein 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660471" }, "gene_names": [ { "name": "ZBTB6", "type": "recommended", "evidence": [ { "id": "F1SKV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ] }, { "name": "ZBTB6", "type": "synonym", "evidence": [ { "id": "XP_005660471", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660471" } ] } ], "protein_names": [ { "name": "Zinc finger and BTB domain containing 6", "type": "synonym", "evidence": [ { "id": "F1SKV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV1/entry#names_and_taxonomy" } ] }, { "name": "zinc finger and BTB domain-containing protein 6", "type": "synonym", "evidence": [ { "id": "XP_005660471", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660471" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZBTB6", "url": "https://www.uniprot.org/uniprotkb/F1SKV1", "locus": { "chromosome": "1", "start_pos": 263823857, "end_pos": 263846856, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005576", "url": "https://www.ensembl.org/id/ENSSSCG00000005576" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005576", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005576", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18197", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18197", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102161885", "url": "https://www.ncbi.nlm.nih.gov/gene/102161885", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102161885", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102161885", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TEMSGNH", "url": "https://omabrowser.org/oma/group/TEMSGNH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SKV1", "url": "https://www.orthodb.org/?gene=F1SKV1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005660471", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660471", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKV1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAESDVLHFQFEQQGDVVLQKMNLLRQQNLFCDVSIYINDTEFQGHKVILAACSTFMRDQFLLTQSKHVRISILQSAEVGRKLLLSCYTGALEVKRKELLKYLTAASYLQMVHIVEKCTEALSKYLEIDLSLKNNNQYGDLCQSSDPDVKNEEENSDKDCEIIEISEDSPVNIDFRVKEEESNALQSTVESLTSEREEVKSPELSSVDLGFKDNEIRILHVESISTGDVENGKFSQPCTSSKAGMYFSETQHSLINSTVESRVAEVPGNQDQGLFCENPEGSHGPVNEIQNLEEVYSLRHQCPRCPRVFLHVENYLRHLKIHKLFLCLQCGKTFTQKKNLNRHIRGHMGIRPFQCTVCLKTFTAKSTLQDHLNIHSGDRPYKCHCCDMDFKHKSALKKHLTSVHGRSSAEKLPRHDLERQNLL", "length": 424, "header": "tr|F1SKV1-1|F1SKV1_PIG Isoform 1 of Zinc finger and BTB domain containing 6 OS=Sus scrofa OX=9823 GN=ZBTB6 PE=4 SV=2 CANONICAL=F1SKV1-1" }, "isoforms": [ { "isoform_ac": "F1SKV1-1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1/entry#F1SKV1-1", "sequence": { "sequence": "MAAESDVLHFQFEQQGDVVLQKMNLLRQQNLFCDVSIYINDTEFQGHKVILAACSTFMRDQFLLTQSKHVRISILQSAEVGRKLLLSCYTGALEVKRKELLKYLTAASYLQMVHIVEKCTEALSKYLEIDLSLKNNNQYGDLCQSSDPDVKNEEENSDKDCEIIEISEDSPVNIDFRVKEEESNALQSTVESLTSEREEVKSPELSSVDLGFKDNEIRILHVESISTGDVENGKFSQPCTSSKAGMYFSETQHSLINSTVESRVAEVPGNQDQGLFCENPEGSHGPVNEIQNLEEVYSLRHQCPRCPRVFLHVENYLRHLKIHKLFLCLQCGKTFTQKKNLNRHIRGHMGIRPFQCTVCLKTFTAKSTLQDHLNIHSGDRPYKCHCCDMDFKHKSALKKHLTSVHGRSSAEKLPRHDLERQNLL", "length": 424, "header": "tr|F1SKV1-1|F1SKV1_PIG Isoform 1 of Zinc finger and BTB domain containing 6 OS=Sus scrofa OX=9823 GN=ZBTB6 PE=4 SV=2 CANONICAL=F1SKV1-1" }, "locus": { "chromosome": "1", "start_pos": 263828578, "end_pos": 263827307, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075314.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075314.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074168.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074168.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102161885", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102161885", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZBL2-1", "protein_name": "Zinc finger and BTB domain containing 6", "gene_name": "Zbtb6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAESEVLHFQFEQQGDVVLQKMNLLRQQNLFCDVSIYINDTEFQGHKVILAACSTFMRDQFLLTQSKHIRITILQSAEVGRKLLLSCYTGALEVKRKELLKYLTAASYLQMVHIVEKCTEALSKYLEIDLSMKNNQHTDLCQSSDTDVKNEEENSDKDCEIIEISEDSPVNLDPPVKEEEGDALQSAAETLTSERRGVKSPELSTVDGGFKENEICILHVESIHTDDIENGQFPQPCTSSNAGMYFPETQHSVINSTVENRVTEVPGNTNQGLFSENSDGSHGTINEIQNLDENFSLRHQCPRCPRGFLHVENYLRHLKMHKLFLCLQCGKTFTQKKNLNRHIRGHMGIRPFQCTVCLKTFTAKSTLQDHLNIHSGDRPYKCHCCDMDFKHKSALKKHLTSVHGRSSGEKLSRPDLKCQNLL", "length": 423 }, "evidence": [ { "id": "F1SKV1", "url": "https://omabrowser.org/oma/group/F1SKV1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q15916-1", "protein_name": "Zinc finger and BTB domain-containing protein 6", "gene_name": "ZBTB6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAESDVLHFQFEQQGDVVLQKMNLLRQQNLFCDVSIYINDTEFQGHKVILAACSTFMRDQFLLTQSKHVRITILQSAEVGRKLLLSCYTGALEVKRKELLKYLTAASYLQMVHIVEKCTEALSKYLEIDLSMKNNNQHTDLCQSSDPDVKNEDENSDKDCEIIEISEDSPVNIDFHVKEEESNALQSTVESLTSERKEMKSPELSTVDIGFKDNEICILHVESISTAGVENGQFSQPCTSSKASMYFSETQHSLINSTVESRVAEVPGNQDQGLFCENTEGSYGTVSEIQNLEEGYSLRHQCPRCPRGFLHVENYLRHLKMHKLFLCLQCGKTFTQKKNLNRHIRGHMGIRPFQCTVCLKTFTAKSTLQDHLNIHSGDRPYKCHCCDMDFKHKSALKKHLTSVHGRSSGEKLSRPDLKRQSLL", "length": 424 }, "evidence": [ { "id": "F1SKV1", "url": "https://omabrowser.org/oma/group/F1SKV1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K088-1", "protein_name": "Zinc finger and BTB domain-containing protein 6", "gene_name": "Zbtb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAESDVLHFQFEQQGDVVLQKMNLLRQQNLFCDVSIYINDTEFQGHKVILAACSTFMRDQFLLTQSKHVRITILQSAEVGWKLLLSCYTGALEVKRKELLKYLTAASYLQMVHIVEKCTEALSKYLEIDLSMKNNQHTDLCQSSDTDVKNEEENSDKDCEIIEISEDSPVNLDFHVKEEESNALQSAAETLTSERMRMQSPELSAVDGGFKENEICILHVESISTDDVENGQFSQPCTSSKAGIYFPETQHSLINSTVENRVTEVPGNTNQGLFSENSDGSHGTVNEIQNLDENFSLRHQCPRCPRGFLHVENYLRHLKMHKLFLCLQCGKTFTQKKNLNRHIRGHMGIRPFQCTVCLKTFTAKSTLQDHLNIHSGDRPYKCHCCDMDFKHKSALKKHLTSVHGRSSGEKLSRPDLKRQNLL", "length": 423 }, "evidence": [ { "id": "F1SKV1", "url": "https://omabrowser.org/oma/group/F1SKV1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "pmid": "" }, { "name": "regulation of immune system process", "id": "GO:0002682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002682", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "pmid": "" }, { "name": "regulation of cytokine production", "id": "GO:0001817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001817", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SKV1", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 97, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SKV1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKV1" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 301, "end_pos": 323, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 257, "end_pos": 259 }, { "start_pos": 40, "end_pos": 42 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKW8-1", "uniprot_ac": "F1SKW8", "uniprot_id": "F1SKW8_PIG", "mass": { "chemical_mass": 34954.0, "monoisotopic_mass": 34954.0 }, "refseq": { "ac": "XP_020941107", "name": "olfactory receptor 1J4-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941107" }, "gene_names": [ { "name": "LOC110259704", "type": "recommended", "evidence": [ { "id": "F1SKW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKW8" } ] }, { "name": "LOC110259704", "type": "synonym", "evidence": [ { "id": "XP_020941107", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941107" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SKW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKW8/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 1J4-like", "type": "synonym", "evidence": [ { "id": "XP_020941107", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941107" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SKW8", "url": "https://www.uniprot.org/uniprotkb/F1SKW8#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKW8", "url": "https://www.uniprot.org/uniprotkb/F1SKW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110259704", "url": "https://www.uniprot.org/uniprotkb/F1SKW8", "locus": {} } ], "crossref": [ { "id": "F1SKW8", "url": "https://alphafold.ebi.ac.uk/entry/F1SKW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000048812", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000048812", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15918", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15918", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110259704", "url": "https://www.ncbi.nlm.nih.gov/gene/110259704", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110259704", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259704", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SKW8", "url": "https://www.orthodb.org/?gene=F1SKW8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020941107", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941107", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SKW8", "url": "https://www.uniprot.org/uniprotkb/F1SKW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKW8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTRDNQSSVYEFLLLGLPIQPEQQGMFFALFLGMYLTTVLGNLLIILLIKLDPHLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCLTQTYFFLFFGCIDNFLLAVMAYDRYVAICHPLRYIIIMREELCICLLAGSWLLSCAYALTHTILLAQLSFCADSVIPHFFCDLAALLKLSCSDTSLNELVILTEGAAVVIFPLSCILVSYGHIGVSILRVPSTKGICKALSTCGSHLFVVSLFYGTIMSLYLSSSSGQSHEKNIISSMMYTVVTPMLNPFIYSLRNRDITLALGKLFRNNNLFAK", "length": 313, "header": "tr|F1SKW8-1|F1SKW8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110259704 PE=3 SV=5 CANONICAL=F1SKW8-1" }, "isoforms": [ { "isoform_ac": "F1SKW8-1", "url": "https://www.uniprot.org/uniprotkb/F1SKW8/entry#F1SKW8-1", "sequence": { "sequence": "MTRDNQSSVYEFLLLGLPIQPEQQGMFFALFLGMYLTTVLGNLLIILLIKLDPHLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCLTQTYFFLFFGCIDNFLLAVMAYDRYVAICHPLRYIIIMREELCICLLAGSWLLSCAYALTHTILLAQLSFCADSVIPHFFCDLAALLKLSCSDTSLNELVILTEGAAVVIFPLSCILVSYGHIGVSILRVPSTKGICKALSTCGSHLFVVSLFYGTIMSLYLSSSSGQSHEKNIISSMMYTVVTPMLNPFIYSLRNRDITLALGKLFRNNNLFAK", "length": 313, "header": "tr|F1SKW8-1|F1SKW8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110259704 PE=3 SV=5 CANONICAL=F1SKW8-1" }, "locus": { "chromosome": "1", "start_pos": 263569176, "end_pos": 263568238, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006121.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006121.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005962.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005962.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKW8", "url": "https://www.uniprot.org/uniprotkb/F1SKW8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110259704", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110259704", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SKW8", "url": "https://www.uniprot.org/uniprotkb/F1SKW8" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SKW8", "url": "https://www.uniprot.org/uniprotkb/F1SKW8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SKW8", "url": "https://www.uniprot.org/uniprotkb/F1SKW8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SKW8", "url": "https://www.uniprot.org/uniprotkb/F1SKW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKW8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKW8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKW8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKW8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SKX0-1", "uniprot_ac": "F1SKX0", "uniprot_id": "F1SKX0_PIG", "mass": { "chemical_mass": 35293.0, "monoisotopic_mass": 35293.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100513969", "type": "recommended", "evidence": [ { "id": "F1SKX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKX0" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SKX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKX0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SKX0", "url": "https://www.uniprot.org/uniprotkb/F1SKX0#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SKX0", "url": "https://www.uniprot.org/uniprotkb/F1SKX0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100513969", "url": "https://www.uniprot.org/uniprotkb/F1SKX0", "locus": {} } ], "crossref": [ { "id": "F1SKX0", "url": "https://alphafold.ebi.ac.uk/entry/F1SKX0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15918", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15918", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SKX0", "url": "https://www.uniprot.org/uniprotkb/F1SKX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SKX0-1", "url": "https://www.uniprot.org/uniprotkb/F1SKX0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRENQSSVSEFHLLGLPIRPEQQGMFFALFLGMYLTTVLGNLLIILLIRLDPHLHTPMYFFLSHLALTDISFASVTVPKMLINMQTQDQSIPYAGCISQTYCFILFADLDSFLITSMAYDRYVAICHPLHYAIIMSQSMCVMLVAGSWIIACACALLHTLLLARLSFCADTIPHFFCDLAALLRLSCSDTYLNQLVIFTAGLTAIMLPFVCILISYGHIGANVLRVPSTKGICKALSTCGSHLSVVILYYGAIIGLYFLPSSNNTNDSNIIASLMYTVVTPMLNPFIYSLRNKDMKGAWRKLWRGIVKRNMSHGT", "length": 316, "header": "tr|F1SKX0-1|F1SKX0_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100513969 PE=3 SV=4 CANONICAL=F1SKX0-1" }, "isoforms": [ { "isoform_ac": "F1SKX0-1", "url": "https://www.uniprot.org/uniprotkb/F1SKX0/entry#F1SKX0-1", "sequence": { "sequence": "MRRENQSSVSEFHLLGLPIRPEQQGMFFALFLGMYLTTVLGNLLIILLIRLDPHLHTPMYFFLSHLALTDISFASVTVPKMLINMQTQDQSIPYAGCISQTYCFILFADLDSFLITSMAYDRYVAICHPLHYAIIMSQSMCVMLVAGSWIIACACALLHTLLLARLSFCADTIPHFFCDLAALLRLSCSDTYLNQLVIFTAGLTAIMLPFVCILISYGHIGANVLRVPSTKGICKALSTCGSHLSVVILYYGAIIGLYFLPSSNNTNDSNIIASLMYTVVTPMLNPFIYSLRNKDMKGAWRKLWRGIVKRNMSHGT", "length": 316, "header": "tr|F1SKX0-1|F1SKX0_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100513969 PE=3 SV=4 CANONICAL=F1SKX0-1" }, "locus": { "chromosome": "AEMK02000598.1", "start_pos": 1308225, "end_pos": 1307105, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006119.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006119.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005960.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005960.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SKX0", "url": "https://www.uniprot.org/uniprotkb/F1SKX0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SKX0", "url": "https://www.uniprot.org/uniprotkb/F1SKX0" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SKX0", "url": "https://www.uniprot.org/uniprotkb/F1SKX0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SKX0", "url": "https://www.uniprot.org/uniprotkb/F1SKX0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SKX0", "url": "https://www.uniprot.org/uniprotkb/F1SKX0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SKX0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SKX0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SKX0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SKX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SKX0" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 264, "end_pos": 266 }, { "start_pos": 267, "end_pos": 269 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SL33-1", "uniprot_ac": "F1SL33", "uniprot_id": "F1SL33_PIG", "mass": { "chemical_mass": 45731.0, "monoisotopic_mass": 45731.0 }, "refseq": {}, "gene_names": [ { "name": "ZPLD1", "type": "recommended", "evidence": [ { "id": "F1SL33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL33" } ] } ], "protein_names": [ { "name": "Zona pellucida-like domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1SL33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL33/entry#names_and_taxonomy" } ] }, { "name": "Cupulin", "type": "synonym", "evidence": [ { "id": "F1SL33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL33/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Glycoprotein which is a component of the gelatinous extracellular matrix in the cupulae of the vestibular organ.", "evidence": [ { "database": "UniProtKB", "id": "F1SL33", "url": "https://www.uniprot.org/uniprotkb/F1SL33#function" }, { "database": "UniProtKB", "id": "ARBA00037652", "url": "https://www.uniprot.org/uniprotkb/ARBA00037652#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SL33", "url": "https://www.uniprot.org/uniprotkb/F1SL33" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZPLD1", "url": "https://www.uniprot.org/uniprotkb/F1SL33", "locus": { "chromosome": "13", "start_pos": 156642993, "end_pos": 156717554, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011947", "url": "https://www.ensembl.org/id/ENSSSCG00000011947" } ] } } ], "crossref": [ { "id": "F1SL33", "url": "https://alphafold.ebi.ac.uk/entry/F1SL33", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011947", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011947", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042235", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14002:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14002:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00100", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00100", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SL33", "url": "https://www.uniprot.org/uniprotkb/F1SL33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL33-1", "url": "https://www.uniprot.org/uniprotkb/F1SL33-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERIWLLLFLTIRVLPGSAQFNGYNCDANLHSRFPAERDINVYCGVQAITMKINFCTVLFSGYSETDLALNGRHGDSHCRGFINNNTFPAVVIFIINLSTLEGCGNNLVVSTIPGVSAYGNATSVQIGNISGYIDTPDPPTIISYLPGLLYKFSCSYPLEYLVNNTQLASSSAAISVRENNGTFVSTLNLLLYNDSTYSQQLIIPSIGLPLKTKVFAAVQATNLDGRWNVLMDYCYTTPSGNPNDDIRYDLFLSCDKDPQTTVIENGRSQRGRFSFEVFRFVKHKNQKMSTVFLHCVTKLCRADDCPFLMPICGHRERRDSRRRATWSPQSTSGNAVLSAGPIITRSDETPTNNSQLGSPNEPPFQLNAVTSALISGMVILGVMSFSLLTCSLVLLHRKVPTSLALNGVQNPVFD", "length": 415, "header": "tr|F1SL33-1|F1SL33_PIG Isoform 1 of Zona pellucida-like domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ZPLD1 PE=4 SV=4 CANONICAL=F1SL33-1" }, "isoforms": [ { "isoform_ac": "F1SL33-1", "url": "https://www.uniprot.org/uniprotkb/F1SL33/entry#F1SL33-1", "sequence": { "sequence": "MERIWLLLFLTIRVLPGSAQFNGYNCDANLHSRFPAERDINVYCGVQAITMKINFCTVLFSGYSETDLALNGRHGDSHCRGFINNNTFPAVVIFIINLSTLEGCGNNLVVSTIPGVSAYGNATSVQIGNISGYIDTPDPPTIISYLPGLLYKFSCSYPLEYLVNNTQLASSSAAISVRENNGTFVSTLNLLLYNDSTYSQQLIIPSIGLPLKTKVFAAVQATNLDGRWNVLMDYCYTTPSGNPNDDIRYDLFLSCDKDPQTTVIENGRSQRGRFSFEVFRFVKHKNQKMSTVFLHCVTKLCRADDCPFLMPICGHRERRDSRRRATWSPQSTSGNAVLSAGPIITRSDETPTNNSQLGSPNEPPFQLNAVTSALISGMVILGVMSFSLLTCSLVLLHRKVPTSLALNGVQNPVFD", "length": 415, "header": "tr|F1SL33-1|F1SL33_PIG Isoform 1 of Zona pellucida-like domain-containing protein 1 OS=Sus scrofa OX=9823 GN=ZPLD1 PE=4 SV=4 CANONICAL=F1SL33-1" }, "locus": { "chromosome": "13", "start_pos": 156683822, "end_pos": 156643997, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013073.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013073.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012728.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012728.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SL33", "url": "https://www.uniprot.org/uniprotkb/F1SL33" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SL33", "url": "https://www.uniprot.org/uniprotkb/F1SL33" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SL33", "url": "https://www.uniprot.org/uniprotkb/F1SL33" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "F1SL33", "url": "https://www.uniprot.org/uniprotkb/F1SL33" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 353, "end_pos": 355, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SL33-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 415, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SL33-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SL33" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SL33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL33" }, { "id": "PS51034", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51034" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ZP", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 320, "start_aa": "Tyr", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 129, "end_pos": 131 }, { "start_pos": 164, "end_pos": 166 }, { "start_pos": 181, "end_pos": 183 }, { "start_pos": 194, "end_pos": 196 }, { "start_pos": 353, "end_pos": 355 }, { "start_pos": 85, "end_pos": 87 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SL35-1", "uniprot_ac": "F1SL35", "uniprot_id": "F1SL35_PIG", "mass": { "chemical_mass": 29669.0, "monoisotopic_mass": 29669.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Glutathione S-transferase", "type": "recommended", "evidence": [ { "id": "F1SL35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL35/entry#names_and_taxonomy" } ] }, { "name": "2.5.1.18", "type": "synonym", "evidence": [ { "id": "F1SL35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL35/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SL35", "url": "https://www.uniprot.org/uniprotkb/F1SL35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SL35", "locus": {} } ], "crossref": [ { "id": "F1SL35", "url": "https://alphafold.ebi.ac.uk/entry/F1SL35", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011944", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011944", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03075", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03075", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03209", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03209", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003081", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003081", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004046", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004046", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010987", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010987", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11571", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11571", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11571:SF137", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11571:SF137", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00043", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00043", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02798", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02798", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156590", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156590", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "16437", "url": "https://www.rhea-db.org/rhea/16437", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SL35", "url": "https://www.uniprot.org/uniprotkb/F1SL35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL35-1", "url": "https://www.uniprot.org/uniprotkb/F1SL35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALPIKPSSALNTFISRFLGKLARRKARDAGKSTEPSTTAITLGYWDIRGLAHAIRLLLEYTGSNYEERKYMMGDPPDYDRSQWLNERSKLGLDFPNLPYLIDGPHKLTQSNAILRYIARKHNMCGETEKEKIQVDILESQVMDVRLHMARVCYSSDFEKLKPGYVDEIPEKMRLFSAFLGKGPWFAGHTLTYVDFLAYDILDLHRIFEPKCLDEFPNLKDFITRFEGLKKISAYMKSSRFLPRPLFLKIAMWGNK", "length": 256, "header": "tr|F1SL35-1|F1SL35_PIG Isoform 1 of Glutathione S-transferase OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SL35-1" }, "isoforms": [ { "isoform_ac": "F1SL35-1", "url": "https://www.uniprot.org/uniprotkb/F1SL35/entry#F1SL35-1", "sequence": { "sequence": "MALPIKPSSALNTFISRFLGKLARRKARDAGKSTEPSTTAITLGYWDIRGLAHAIRLLLEYTGSNYEERKYMMGDPPDYDRSQWLNERSKLGLDFPNLPYLIDGPHKLTQSNAILRYIARKHNMCGETEKEKIQVDILESQVMDVRLHMARVCYSSDFEKLKPGYVDEIPEKMRLFSAFLGKGPWFAGHTLTYVDFLAYDILDLHRIFEPKCLDEFPNLKDFITRFEGLKKISAYMKSSRFLPRPLFLKIAMWGNK", "length": 256, "header": "tr|F1SL35-1|F1SL35_PIG Isoform 1 of Glutathione S-transferase OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SL35-1" }, "locus": { "chromosome": "13", "start_pos": 152076746, "end_pos": 152066303, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013070.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013070.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012726.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012726.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SL35", "url": "https://www.uniprot.org/uniprotkb/F1SL35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-156590", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156590", "resource": "Reactome", "description": "Glutathione conjugation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glutathione transferase activity", "id": "GO:0004364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004364", "evidence": [ { "database": "UniProtKB", "id": "F1SL35", "url": "https://www.uniprot.org/uniprotkb/F1SL35" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SL35", "url": "https://www.uniprot.org/uniprotkb/F1SL35" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F1SL35", "url": "https://www.uniprot.org/uniprotkb/F1SL35" } ], "pmid": "" }, { "name": "glutathione metabolic process", "id": "GO:0006749", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006749", "evidence": [ { "database": "UniProtKB", "id": "F1SL35", "url": "https://www.uniprot.org/uniprotkb/F1SL35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16437", "name": "", "equation": "RX + glutathione = an S-substituted glutathione + a halide anion + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16437", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16437" } ] }, { "id": "R-SSC-176054", "name": "GST dimers conjugate GSH with cytosolic substrates", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-176054", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176054" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SL35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 256, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SL35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SL35" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SL35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL35" }, { "id": "PS50405", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50405" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GST C-terminal", "eco_id": "ECO_0000259", "start_pos": 128, "end_pos": 246, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SL35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL35" }, { "id": "PS50404", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50404" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GST N-terminal", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 126, "start_aa": "Thr", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SL57-1", "uniprot_ac": "F1SL57", "uniprot_id": "F1SL57_PIG", "mass": { "chemical_mass": 101136.0, "monoisotopic_mass": 101136.0 }, "refseq": {}, "gene_names": [ { "name": "MBD6", "type": "recommended", "evidence": [ { "id": "F1SL57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL57" } ] } ], "protein_names": [ { "name": "Methyl-CpG binding domain protein 6", "type": "synonym", "evidence": [ { "id": "F1SL57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL57/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SL57", "url": "https://www.uniprot.org/uniprotkb/F1SL57" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MBD6", "url": "https://www.uniprot.org/uniprotkb/F1SL57", "locus": { "chromosome": "5", "start_pos": 22799126, "end_pos": 22791437, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000431", "url": "https://www.ensembl.org/id/ENSSSCG00000000431" } ] } } ], "crossref": [ { "id": "F1SL57", "url": "https://alphafold.ebi.ac.uk/entry/F1SL57", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000431", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000431", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001739", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001739", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16112:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16112:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SL57", "url": "https://www.uniprot.org/uniprotkb/F1SL57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL57-1", "url": "https://www.uniprot.org/uniprotkb/F1SL57-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNGGNESSGADRAGGPVATSVPIGWQRCVREGAVLYISPSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFDPLAPVTLGGAGVGPASEEDMTKLCNHRRKAVAMATLYRSMETTCSHSSPGEGASPQLFHTVSPGPPSARPPCRVPPTTPLNGGPGSLPPETPSVPQAFPPLAGPGGLFPQPRLPDPVPSGGSSSPCFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPPDLGSPPAPHASSSPPSDPPLFHCSDALTPPPPPSNNLPGPPGPPGPATQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSPRPSQRRPRRPPTVLRLLEGGGPQAPRRSRPRAPAPTPQPFPLPEPSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIPPSLPGTTSGSLSSVPGAPAPPAASKAPLVPSPVLHSPSEALGLGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFPGMLGALPLPLSLGQPPPSPLLSHSLFGVLAGGGGQPPPEPLLAPPGGPGPPLAPGEPEGPSLLVASLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTAGDGEGSAEGAGGPSGETFSGLGDLPPLLFPPLSAPPTLIALNSALLAASLDPPSGTHPQPCVLSAPQPGPPTSSVTTATTDPGASSLGKAPSNSGRPPQLLSPLLSASLLGDLSSLTSSPGTLPSLLQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSLQIPPEQPEAPCLPPESPTSALEPEPAGPPLSALAPPHSSPDPPVPELLTGRGSGKRGRRGGGGLRGINGEARPGRGRKPGSRREPGRLALKWGARGGFNGQMERSPRRTHHWQHNGELAEGDAEPKDPSPPGPHSEDLKVPPGVVRKSRRGRRRKYNPTRNSNSSRQDVTLDPSPTTRAAVPLPPRARPGRPAKNKRRKLAP", "length": 1005, "header": "tr|F1SL57-1|F1SL57_PIG Isoform 1 of Methyl-CpG binding domain protein 6 OS=Sus scrofa OX=9823 GN=MBD6 PE=4 SV=4 CANONICAL=F1SL57-1" }, "isoforms": [ { "isoform_ac": "F1SL57-1", "url": "https://www.uniprot.org/uniprotkb/F1SL57/entry#F1SL57-1", "sequence": { "sequence": "MNGGNESSGADRAGGPVATSVPIGWQRCVREGAVLYISPSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFDPLAPVTLGGAGVGPASEEDMTKLCNHRRKAVAMATLYRSMETTCSHSSPGEGASPQLFHTVSPGPPSARPPCRVPPTTPLNGGPGSLPPETPSVPQAFPPLAGPGGLFPQPRLPDPVPSGGSSSPCFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPPDLGSPPAPHASSSPPSDPPLFHCSDALTPPPPPSNNLPGPPGPPGPATQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSPRPSQRRPRRPPTVLRLLEGGGPQAPRRSRPRAPAPTPQPFPLPEPSQPILPSVLSLLGLPTPGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIPPSLPGTTSGSLSSVPGAPAPPAASKAPLVPSPVLHSPSEALGLGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFPGMLGALPLPLSLGQPPPSPLLSHSLFGVLAGGGGQPPPEPLLAPPGGPGPPLAPGEPEGPSLLVASLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTAGDGEGSAEGAGGPSGETFSGLGDLPPLLFPPLSAPPTLIALNSALLAASLDPPSGTHPQPCVLSAPQPGPPTSSVTTATTDPGASSLGKAPSNSGRPPQLLSPLLSASLLGDLSSLTSSPGTLPSLLQPPGPLLSGQLGLQLLPGGGAPPPLSEASSPLACLLQSLQIPPEQPEAPCLPPESPTSALEPEPAGPPLSALAPPHSSPDPPVPELLTGRGSGKRGRRGGGGLRGINGEARPGRGRKPGSRREPGRLALKWGARGGFNGQMERSPRRTHHWQHNGELAEGDAEPKDPSPPGPHSEDLKVPPGVVRKSRRGRRRKYNPTRNSNSSRQDVTLDPSPTTRAAVPLPPRARPGRPAKNKRRKLAP", "length": 1005, "header": "tr|F1SL57-1|F1SL57_PIG Isoform 1 of Methyl-CpG binding domain protein 6 OS=Sus scrofa OX=9823 GN=MBD6 PE=4 SV=4 CANONICAL=F1SL57-1" }, "locus": { "chromosome": "5", "start_pos": 22798231, "end_pos": 22793364, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000465.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000465.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000458.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000458.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 397, "start_aa": "Thr", "end_pos": 397, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr397", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 636, "start_aa": "Thr", "end_pos": 636, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr636", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 821, "start_aa": "Thr", "end_pos": 821, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr821", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SL57", "url": "https://www.uniprot.org/uniprotkb/F1SL57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SL57", "url": "https://www.uniprot.org/uniprotkb/F1SL57" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SL57", "url": "https://www.uniprot.org/uniprotkb/F1SL57" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SL57", "url": "https://www.uniprot.org/uniprotkb/F1SL57" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SL57", "url": "https://www.uniprot.org/uniprotkb/F1SL57" } ], "pmid": "" }, { "name": "chromocenter", "id": "GO:0010369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010369", "evidence": [ { "database": "UniProtKB", "id": "F1SL57", "url": "https://www.uniprot.org/uniprotkb/F1SL57" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 966, "end_pos": 968, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SL57-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1005, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SL57-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SL57" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SL57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL57" }, { "id": "PS50982", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50982" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MBD", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 81, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 397, 636, 821 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 966, "end_pos": 968 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SL85-1", "uniprot_ac": "F1SL85", "uniprot_id": "F1SL85_PIG", "mass": { "chemical_mass": 62520.0, "monoisotopic_mass": 62520.0 }, "refseq": { "ac": "XP_001927797", "name": "E3 ubiquitin-protein ligase MSL2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927797" }, "gene_names": [ { "name": "MSL2", "type": "recommended", "evidence": [ { "id": "F1SL85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ] }, { "name": "MSL2", "type": "synonym", "evidence": [ { "id": "XP_001927797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927797" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase MSL2", "type": "recommended", "evidence": [ { "id": "F1SL85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL85/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1SL85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL85/entry#names_and_taxonomy" } ] }, { "name": "E3 ubiquitin-protein ligase MSL2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001927797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927797" } ] }, { "name": "Male-specific lethal 2-like 1", "type": "synonym", "evidence": [ { "id": "F1SL85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL85/entry#names_and_taxonomy" } ] }, { "name": "Male-specific lethal-2 homolog 1", "type": "synonym", "evidence": [ { "id": "F1SL85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL85/entry#names_and_taxonomy" } ] }, { "name": "Male-specific lethal-2 homolog", "type": "synonym", "evidence": [ { "id": "F1SL85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL85/entry#names_and_taxonomy" } ] }, { "name": "RING finger protein 184", "type": "synonym", "evidence": [ { "id": "F1SL85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL85/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MSL2", "url": "https://www.uniprot.org/uniprotkb/F1SL85", "locus": { "chromosome": "13", "start_pos": 77146318, "end_pos": 77180745, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011650", "url": "https://www.ensembl.org/id/ENSSSCG00000011650" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011650", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011650", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13122", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13122", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16522", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16522", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155763", "url": "https://www.ncbi.nlm.nih.gov/gene/100155763", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037922", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037922", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155763", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155763", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TEVCDSN", "url": "https://omabrowser.org/oma/group/TEVCDSN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SL85", "url": "https://www.orthodb.org/?gene=F1SL85", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16048", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16048", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16048:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16048:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16682", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16682", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16685", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16685", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3214847", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001927797", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927797", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SL85-1", "url": "https://www.uniprot.org/uniprotkb/F1SL85-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKSCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTTLARDIIEAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTSEPTTDPQASLSPISESTLSIAIGSSVINGLPPYNGLSIDRFGINIPSPEHSNTIDVCNTVDIKTEDLSDSLPPVCDTVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTEVCCPNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKVAKLNRKRSRSESDSEKVQPLPISTIIRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSHSKTKPGILKKDKTVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC", "length": 577, "header": "tr|F1SL85-1|F1SL85_PIG Isoform 1 of E3 ubiquitin-protein ligase MSL2 OS=Sus scrofa OX=9823 GN=MSL2 PE=3 SV=1 CANONICAL=F1SL85-1" }, "isoforms": [ { "isoform_ac": "F1SL85-1", "url": "https://www.uniprot.org/uniprotkb/F1SL85/entry#F1SL85-1", "sequence": { "sequence": "MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKSCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTTLARDIIEAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTSEPTTDPQASLSPISESTLSIAIGSSVINGLPPYNGLSIDRFGINIPSPEHSNTIDVCNTVDIKTEDLSDSLPPVCDTVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTEVCCPNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKVAKLNRKRSRSESDSEKVQPLPISTIIRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSHSKTKPGILKKDKTVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC", "length": 577, "header": "tr|F1SL85-1|F1SL85_PIG Isoform 1 of E3 ubiquitin-protein ligase MSL2 OS=Sus scrofa OX=9823 GN=MSL2 PE=3 SV=1 CANONICAL=F1SL85-1" }, "locus": { "chromosome": "13", "start_pos": 77180046, "end_pos": 77150128, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012752.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012752.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012418.1", "url": "https://www.ensembl.org/id/ENSSSCP00000012418.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155763", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155763", "resource": "KEGG Pathway" }, { "id": "R-SSC-3214847", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "resource": "Reactome", "description": "HATs acetylate histones" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NVS8-1", "protein_name": "E3 ubiquitin-protein ligase MSL2", "gene_name": "MSL2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNPVNATALYVSASRLVLNYDPGDPQSFTEINKLLPYFRQSLSCCVCGNLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTPLARDIIQAVDCSADLLALLKDGSPLHEETEKSSDTALALCLTHSPVPSTSELTSDPPATLTSKPESTQNVDIRGSVINGLPNCNGLSVDKLGVNIPSPEHANTIDVCSTGEYMKNEDNSSSLQPVCDPVSTSDLCTTGIDICSFSEDIKPGGSLLLSVEEVLRSLETVSNTEVCGSNLQPSLEANVTNGPFLQLSPPPLSHNIFVSTDASPHGISCTAATPKVVKLNRKRSRSESDSEKVQPLPISSIICGPTLGASAPVTVKQENKMSLQPVATVPNGGTTPKISKTVLLSNKSVKKNLEHAPKKSHPKAKPGVLKTKDKAKEKVPSSNVMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDVRYDC", "length": 579 }, "evidence": [ { "id": "F1SL85", "url": "https://omabrowser.org/oma/group/F1SL85/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8I6AT15-1", "protein_name": "MSL complex subunit 2", "gene_name": "Msl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLTLSPVISVYPSLQSSELNQFQFKRLISELHYMKLYFSFAKICAFLLPPLGHLLQDPIAPTNSTCQHYVCKSCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTTLARDIIEAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTSEPTADPQAALSPMSESTLSIAIGSSVINGLPTYNGLSIDRFGINIPSPEHPNTIDVCNTVDIKTEDLSDSLPPVCDTVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTEVCCSNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKVAKLNRKRSRSESDSEKVQPLPISTIIRGPTLGASAPVTVKRESKLSLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSHSKSKPGILKKDKAVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC", "length": 581 }, "evidence": [ { "id": "F1SL85", "url": "https://omabrowser.org/oma/group/F1SL85/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MRF9-1", "protein_name": "E3 ubiquitin-protein ligase MSL2", "gene_name": "MSL2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKSCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTALARDIIEAVDCSSDILALLNDGSLFGEETEKPSDSSFTLCLTHSPLPSTSEPTTDPQASLSPISESTLSIAIGSSVINGLPTYNGLSIDRFGINIPSPEHSNTIDVCNTVDIKTEDLSDSLPPVCDTVASDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTEVCCPNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKVAKLNRKRSRSESDSEKVQPLPISTIIRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSHSKTKPGILKKDKTVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC", "length": 577 }, "evidence": [ { "id": "F1SL85", "url": "https://omabrowser.org/oma/group/F1SL85/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1QVJ4-1", "protein_name": "E3 ubiquitin-protein ligase MSL2", "gene_name": "msl2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNPVNATTLYVSACRSVLQCDPRDPQALAEIYKLLPFFRQSLACLVCGNLLQDPIAPTNSSCQHYVCKSCKGKKMMMKPSCSWCKDYEQFEENKQLCILVDCYKKLCEYIADSPLAQHISSTVEGSSDILSLLNEGLEGLGEESLSLSLTNQSPTPSTSETLPDEGQSPSTEIKEQGLSPLGVNGLQDCNGLTNVEELTASLPSLEASVPDSVESSGGDEVKQESFTNEIPVCEAVAAAGEELCTSTMDICGFSEDIKHDGGTLLLSVEEVLRTLEPDHVSQDECPAILQSTLESSGNLNGPFSSVDSSRQLSSLPQDSHEILVPQHPVSQQNQQHLGISCSAVTPRIPRSNRKRSRSESDSEKIQPLPISTFICGPTLGASAPVQIKCEPKSPAQTIPHMAVVPNGGGLPKVGKTLLVPAKPVKKTLDHHGPKKAYTKSKQGTPKSKEKMKDRILTSALIPGSPTKVVYKKAQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNATGSGAGGMLNVSTAAGSPVASFLATGPHEDKGFDEPLDMRFD", "length": 598 }, "evidence": [ { "id": "F1SL85", "url": "https://omabrowser.org/oma/group/F1SL85/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3I1E2-1", "protein_name": "E3 ubiquitin-protein ligase MSL2", "gene_name": "Msl2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKSCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTTLARDIIEAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTSEPTADPQASLSPMSESTLSIAIGSSVINGLPTYNGLSIDRFGLNLPSPEHPNTIDVCNTVDIKTEDLSDSLPPVCDTVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTEVCCPNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPTLHGLSCTAATPKVAKLNRKRSRSESDSEKVQPLPISTIIRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSHSKSKPGILKKDKAVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC", "length": 577 }, "evidence": [ { "id": "F1SL85", "url": "https://omabrowser.org/oma/group/F1SL85/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P50534-1", "protein_name": "E3 ubiquitin-protein ligase msl-2", "gene_name": "msl-2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAQTAYLKVTRIAMRSASNLSKRRVEELNSGLGELRQLLSCVVCCQLLVDPYSPKGKRCQHNVCRLCLRGKKHLFPSCTQCEGCSDFKTYEENRMMAAQLLCYKTLCVHLLHSALFGELAGMRPQVARELVPRIKLPPKTTQEFIREGSNISDTFDIFLPQPDLPFLKDMPTSLPAETPPTSAVTTPELPYDHHLNISDIEAEAAATAEQGHFSPLPLLPTGSRMGMLSHAGQIVIATESSESGFMDQAWTDQVDLSGTVSVSKYTNSGNNFAVSYVMPTSATTKFDPQELQIGQVVQMADSTQLAVLAAVEETVETSTQLTVLSTTVEETVETSTQLEVLTSAEEPNEISDQLANLQVEESDEALVEETVEEAEGTSIPSEVVAEHMEEDQHLDVHTSQSPTQTEMEEAVEEHVATKTQLGHVQTELQDAESLQKDFEDAKAAAEEAKEKEKDLHAISAELQKEDSDEPTLKRKRTRTLKASQAAKIEPVPSEVKTKVQSGKGALRRIRGKDKEEKVKPPKPKCRCGISGSSNTLTTCRNSRCPCYKSYNSCAGCHCVCCKNPHKEDYVESDEDDDLEDFEMPKDVPEPMTQSEEPVVAEPRQEENSMAPPDSSAPISLVPLNNLQQSQHPLVLVQNEKGEYQGFNIFQGSKPLDPVTVGFTIRVQLQHTDGFGSLPQYAYIMPTIDPPNPPAPSLSPPPPPAPDREVIEPPAKKFRTSRTRRGRANFSALDTVDELVSGGSRSNSAAGDRSSATDNAHSLFEEIMSGSDDL", "length": 773 }, "evidence": [ { "id": "F1SL85", "url": "https://omabrowser.org/oma/group/F1SL85/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q69ZF8-1", "protein_name": "E3 ubiquitin-protein ligase MSL2", "gene_name": "Msl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTTLARDIIEAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTSEPTADPQASLSPMSESTLSIAIGSSVINGLPTYNGLSIDRFGINIPSPEHPNTIDVCNTVDIKTEDLSDNLPPVCDTVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTEVCCPNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKVAKLNRKRSRSESDSEKVQPLPISTIIRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSHSKSKPGILKKDKAVKEKMPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC", "length": 577 }, "evidence": [ { "id": "F1SL85", "url": "https://omabrowser.org/oma/group/F1SL85/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HCI7-1", "protein_name": "E3 ubiquitin-protein ligase MSL2", "gene_name": "MSL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPVNATALYISASRLVLNYDPGDPKAFTEINRLLPYFRQSLSCCVCGHLLQDPIAPTNSTCQHYVCKTCKGKKMMMKPSCSWCKDYEQFEENKQLSILVNCYKKLCEYITQTTLARDIIEAVDCSSDILALLNDGSLFCEETEKPSDSSFTLCLTHSPLPSTSEPTTDPQASLSPMSESTLSIAIGSSVINGLPTYNGLSIDRFGINIPSPEHSNTIDVCNTVDIKTEDLSDSLPPVCDTVATDLCSTGIDICSFSEDIKPGDSLLLSVEEVLRSLETVSNTEVCCPNLQPNLEATVSNGPFLQLSSQSLSHNVFMSTSPALHGLSCTAATPKIAKLNRKRSRSESDSEKVQPLPISTIIRGPTLGASAPVTVKRESKISLQPIATVPNGGTTPKISKTVLLSTKSMKKSHEHGSKKSHSKTKPGILKKDKAVKEKIPSHHFMPGSPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQNSYMANGEKKLEAFAVPEKALEQTRLTLGINVTSIAVRNASTSTSVINVTGSPVTTFLAASTHDDKSLDEAIDMRFDC", "length": 577 }, "evidence": [ { "id": "F1SL85", "url": "https://omabrowser.org/oma/group/F1SL85/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" }, { "name": "MSL complex", "id": "GO:0072487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072487", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" }, { "name": "promoter-enhancer loop anchoring activity", "id": "GO:0140585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140585", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" }, { "name": "histone H2B ubiquitin ligase activity", "id": "GO:0141054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141054", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" }, { "name": "epigenetic regulation of gene expression", "id": "GO:0040029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0040029", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" }, { "name": "protein monoubiquitination", "id": "GO:0006513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006513", "evidence": [ { "database": "UniProtKB", "id": "F1SL85", "url": "https://www.uniprot.org/uniprotkb/F1SL85" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 530, "end_pos": 532, "annotation": "n_glycosylation_sequon" }, { "start_pos": 538, "end_pos": 540, "annotation": "n_glycosylation_sequon" }, { "start_pos": 547, "end_pos": 549, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-3321883", "name": "MSL acetylates histone H4", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [ "R-SSC-427469" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3321883", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3321883" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-427469", "participant_name": "AcK17-HIST1H4 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000079046", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000096937", "database": "ENSEMBL", "url": "" }, { "id": "XP_020955506.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCG00000059426", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000078974", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000056814", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000075939", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000104200", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000060975", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000105679", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000054633", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000091902", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000059703", "database": "ENSEMBL", "url": "" }, { "id": "XP_020954094.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000079276", "database": "ENSEMBL", "url": "" }, { "id": "XP_020945589.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000077698", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000095112", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000059526", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000080566", "database": "ENSEMBL", "url": "" }, { "id": "P62802", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000093782", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000057661", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000099931", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000080530", "database": "ENSEMBL", "url": "" }, { "id": "XP_020955508.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000074998", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000099197", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000059574", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000080596", "database": "ENSEMBL", "url": "" }, { "id": "XP_020954087.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000078489", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000101330", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000059243", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000092670", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000053691", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000095385", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000056247", "database": "ENSEMBL", "url": "" }, { "id": "XP_020955509.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000081269", "database": "ENSEMBL", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SL85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL85" }, { "id": "PS52051", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52051" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CXC MSL2-type", "eco_id": "ECO_0000259", "start_pos": 457, "end_pos": 508, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SL85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SL85" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 85, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 530, "end_pos": 532 }, { "start_pos": 538, "end_pos": 540 }, { "start_pos": 547, "end_pos": 549 }, { "start_pos": 59, "end_pos": 61 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLB0-1", "uniprot_ac": "F1SLB0", "uniprot_id": "F1SLB0_PIG", "mass": { "chemical_mass": 45977.0, "monoisotopic_mass": 45977.0 }, "refseq": { "ac": "XP_005669898", "name": "phakinin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669898" }, "gene_names": [ { "name": "BFSP2", "type": "recommended", "evidence": [ { "id": "F1SLB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" } ] }, { "name": "BFSP2", "type": "synonym", "evidence": [ { "id": "XP_005669898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669898" } ] } ], "protein_names": [ { "name": "Phakinin", "type": "recommended", "evidence": [ { "id": "F1SLB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB0/entry#names_and_taxonomy" } ] }, { "name": "49 kDa cytoskeletal protein", "type": "synonym", "evidence": [ { "id": "F1SLB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB0/entry#names_and_taxonomy" } ] }, { "name": "Beaded filament structural protein 2", "type": "synonym", "evidence": [ { "id": "F1SLB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB0/entry#names_and_taxonomy" } ] }, { "name": "Lens fiber cell beaded filament protein CP 47", "type": "synonym", "evidence": [ { "id": "F1SLB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB0/entry#names_and_taxonomy" } ] }, { "name": "Lens fiber cell beaded filament protein CP 49", "type": "synonym", "evidence": [ { "id": "F1SLB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB0/entry#names_and_taxonomy" } ] }, { "name": "Lens intermediate filament-like light", "type": "synonym", "evidence": [ { "id": "F1SLB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB0/entry#names_and_taxonomy" } ] }, { "name": "phakinin", "type": "synonym", "evidence": [ { "id": "XP_005669898", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669898" } ] } ], "function": [ { "annotation": "Required for the correct formation of lens intermediate filaments as part of a complex composed of BFSP1, BFSP2 and CRYAA. Plays a role in maintenance of retinal lens optical clarity.", "evidence": [ { "database": "UniProtKB", "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0#function" }, { "database": "UniProtKB", "id": "ARBA00055101", "url": "https://www.uniprot.org/uniprotkb/ARBA00055101#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BFSP2", "url": "https://www.uniprot.org/uniprotkb/F1SLB0", "locus": { "chromosome": "13", "start_pos": 74639455, "end_pos": 74558297, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011636", "url": "https://www.ensembl.org/id/ENSSSCG00000011636" } ] } } ], "crossref": [ { "id": "F1SLB0", "url": "https://alphafold.ebi.ac.uk/entry/F1SLB0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011636", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011636", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522105", "url": "https://www.ncbi.nlm.nih.gov/gene/100522105", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522105", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522105", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SLB0", "url": "https://www.orthodb.org/?gene=F1SLB0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005669898", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669898", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLB0-1", "url": "https://www.uniprot.org/uniprotkb/F1SLB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTRRVVVDVPTGASPSMPLQRHRASFRGAQSPSSLEGLPASRTIAVGGLVRTPRVYVGMTPSGSTGGLGARVTRRALGISSVFLQGLRSSGLATAPTPGLERDLSGVEDLGGCLVEYMAKVHALEKVSQELEAELRMHLESKATRSESWGALRASWASSCQQVGEAVLENARLMLHTENIQAGADDFKERYENEQPFRKAAEEEINSLYKVIDEANSAKMDLESQIESLKEELGFLSRSYEEDVKMLYKQLAGSELEQLDVPIGTGLDDILETIRIHWERDVEKNRVEAGALLQAKQQAEVARRAQTQEEKLAAALRVELHNTSCQVQSLQAETESLRALKRGLENTLHDAKHWHDIELQNLGAVVSRLEAELREMRSEAEQQLQAREHLLAHKCQLQRDVAAYHALLDREESS", "length": 415, "header": "tr|F1SLB0-1|F1SLB0_PIG Isoform 1 of Phakinin OS=Sus scrofa OX=9823 GN=BFSP2 PE=3 SV=4 CANONICAL=F1SLB0-1" }, "isoforms": [ { "isoform_ac": "F1SLB0-1", "url": "https://www.uniprot.org/uniprotkb/F1SLB0/entry#F1SLB0-1", "sequence": { "sequence": "MSTRRVVVDVPTGASPSMPLQRHRASFRGAQSPSSLEGLPASRTIAVGGLVRTPRVYVGMTPSGSTGGLGARVTRRALGISSVFLQGLRSSGLATAPTPGLERDLSGVEDLGGCLVEYMAKVHALEKVSQELEAELRMHLESKATRSESWGALRASWASSCQQVGEAVLENARLMLHTENIQAGADDFKERYENEQPFRKAAEEEINSLYKVIDEANSAKMDLESQIESLKEELGFLSRSYEEDVKMLYKQLAGSELEQLDVPIGTGLDDILETIRIHWERDVEKNRVEAGALLQAKQQAEVARRAQTQEEKLAAALRVELHNTSCQVQSLQAETESLRALKRGLENTLHDAKHWHDIELQNLGAVVSRLEAELREMRSEAEQQLQAREHLLAHKCQLQRDVAAYHALLDREESS", "length": 415, "header": "tr|F1SLB0-1|F1SLB0_PIG Isoform 1 of Phakinin OS=Sus scrofa OX=9823 GN=BFSP2 PE=3 SV=4 CANONICAL=F1SLB0-1" }, "locus": { "chromosome": "13", "start_pos": 74639190, "end_pos": 74558431, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012735.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012735.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012401.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012401.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 98, "start_aa": "Thr", "end_pos": 98, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr98", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522105", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522105", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" } ], "pmid": "" }, { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of eye lens", "id": "GO:0005212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005212", "evidence": [ { "database": "UniProtKB", "id": "F1SLB0", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLB0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 415, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLB0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLB0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB0" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 104, "end_pos": 415, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 98 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 323, "end_pos": 325 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLB4-1", "uniprot_ac": "F1SLB4", "uniprot_id": "F1SLB4_PIG", "mass": { "chemical_mass": 66602.0, "monoisotopic_mass": 66602.0 }, "refseq": { "ac": "XP_003481677", "name": "glutaminase liver isoform, mitochondrial isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481677" }, "gene_names": [ { "name": "GLS2", "type": "recommended", "evidence": [ { "id": "F1SLB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB4" } ] }, { "name": "GLS2", "type": "synonym", "evidence": [ { "id": "XP_003481677", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481677" } ] } ], "protein_names": [ { "name": "glutaminase", "type": "recommended", "evidence": [ { "id": "F1SLB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB4/entry#names_and_taxonomy" } ] }, { "name": "3.5.1.2", "type": "synonym", "evidence": [ { "id": "F1SLB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB4/entry#names_and_taxonomy" } ] }, { "name": "glutaminase liver isoform, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003481677", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481677" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLB4", "url": "https://www.uniprot.org/uniprotkb/F1SLB4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GLS2", "url": "https://www.uniprot.org/uniprotkb/F1SLB4", "locus": { "chromosome": "5", "start_pos": 21806406, "end_pos": 21820001, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000401", "url": "https://www.ensembl.org/id/ENSSSCG00000000401" } ] } } ], "crossref": [ { "id": "F1SLB4", "url": "https://alphafold.ebi.ac.uk/entry/F1SLB4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000401", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000401", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100738224", "url": "https://www.ncbi.nlm.nih.gov/gene/100738224", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738224", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738224", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SLB4", "url": "https://www.orthodb.org/?gene=F1SLB4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12544", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12544", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12544:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12544:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04960", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04960", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17959", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17959", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-210500", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-210500", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5628897", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8964539", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964539", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003481677", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481677", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "15889", "url": "https://www.rhea-db.org/rhea/15889", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SLB4", "url": "https://www.uniprot.org/uniprotkb/F1SLB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SLB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRSMKALQNALSRAGSHCRQRGWGHLSRSPLLGGGVRHHLSEAAAQGRETPHSHQPLHQDHDPSESGMLSRLGDLLFYTVAEGQERIPIHKFTTALKATGLQTSDPRLRDCMSQMRRRVRESSSGGLLDRDLFRKCVSSNIVLLTQAFRKKFVIPDFEEFTSHVDRIFEDAKELTGGKVAAYIPQLAKSNPDLWGVSLCTVDGQRHSVGNTKIPFCLQSCVKPLTYAISISTLGTDYVHKFVGKEPSGLRYNKLSLNEEGIPHNPMVNAGAIVVSSLIKMDCNKAEKFDFVLQYLNKMAGNEYMGFSNATFQSEKETGDRNYAIGYYLKEKKCFPKGVDMMAALDLYFQLCSVEVTCESGSVMAATLANGGICPITGESVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSAVSGAILLVVPNVMGMMCLSPPLDKLGNSYRGVSFCQKLVSLFNFHNYDNLRHCTRKLDPRREGGEIRNKTVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHTDVVKFLIEACKVNPFVKDRWGNIPMDDAVQFNHLEVVKLLQDYQDSYTPSETQAEAAAEALSKENLESMV", "length": 602, "header": "tr|F1SLB4-1|F1SLB4_PIG Isoform 1 of glutaminase OS=Sus scrofa OX=9823 GN=GLS2 PE=3 SV=4 CANONICAL=F1SLB4-1" }, "isoforms": [ { "isoform_ac": "F1SLB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SLB4/entry#F1SLB4-1", "sequence": { "sequence": "MRSMKALQNALSRAGSHCRQRGWGHLSRSPLLGGGVRHHLSEAAAQGRETPHSHQPLHQDHDPSESGMLSRLGDLLFYTVAEGQERIPIHKFTTALKATGLQTSDPRLRDCMSQMRRRVRESSSGGLLDRDLFRKCVSSNIVLLTQAFRKKFVIPDFEEFTSHVDRIFEDAKELTGGKVAAYIPQLAKSNPDLWGVSLCTVDGQRHSVGNTKIPFCLQSCVKPLTYAISISTLGTDYVHKFVGKEPSGLRYNKLSLNEEGIPHNPMVNAGAIVVSSLIKMDCNKAEKFDFVLQYLNKMAGNEYMGFSNATFQSEKETGDRNYAIGYYLKEKKCFPKGVDMMAALDLYFQLCSVEVTCESGSVMAATLANGGICPITGESVLSAEAVRNTLSLMHSCGMYDFSGQFAFHVGLPAKSAVSGAILLVVPNVMGMMCLSPPLDKLGNSYRGVSFCQKLVSLFNFHNYDNLRHCTRKLDPRREGGEIRNKTVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHTDVVKFLIEACKVNPFVKDRWGNIPMDDAVQFNHLEVVKLLQDYQDSYTPSETQAEAAAEALSKENLESMV", "length": 602, "header": "tr|F1SLB4-1|F1SLB4_PIG Isoform 1 of glutaminase OS=Sus scrofa OX=9823 GN=GLS2 PE=3 SV=4 CANONICAL=F1SLB4-1" }, "locus": { "chromosome": "5", "start_pos": 21819416, "end_pos": 21806860, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000433.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000433.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000427.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000427.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLB4", "url": "https://www.uniprot.org/uniprotkb/F1SLB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738224", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738224", "resource": "KEGG Pathway" }, { "id": "R-SSC-210500", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-210500", "resource": "Reactome", "description": "Glutamate Neurotransmitter Release Cycle" }, { "id": "R-SSC-5628897", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "resource": "Reactome", "description": "TP53 Regulates Metabolic Genes" }, { "id": "R-SSC-8964539", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964539", "resource": "Reactome", "description": "Glutamate and glutamine metabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SLB4", "url": "https://www.uniprot.org/uniprotkb/F1SLB4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "glutamate biosynthetic process", "id": "GO:0006537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006537", "evidence": [ { "database": "UniProtKB", "id": "F1SLB4", "url": "https://www.uniprot.org/uniprotkb/F1SLB4" } ], "pmid": "" }, { "name": "L-glutamine catabolic process", "id": "GO:0006543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006543", "evidence": [ { "database": "UniProtKB", "id": "F1SLB4", "url": "https://www.uniprot.org/uniprotkb/F1SLB4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "glutaminase activity", "id": "GO:0004359", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004359", "evidence": [ { "database": "UniProtKB", "id": "F1SLB4", "url": "https://www.uniprot.org/uniprotkb/F1SLB4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "15889", "name": "", "equation": "L-glutamine + H2O = L-glutamate + NH4(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15889", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15889" } ] }, { "id": "R-SSC-70609", "name": "glutamine + H2O => glutamate + NH4+ (GLS)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [ "R-ALL-113522" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-70609", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70609" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-113522", "participant_name": "L-Gln [mitochondrial matrix]", "crossref": [ { "id": "58359", "database": "ChEBI", "url": "" }, { "id": "ZINC000001532526", "database": "ZINC", "url": "" }, { "id": "C00064", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLB4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 602, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLB4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLB4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLB4" }, { "id": "PF17959", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17959" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glutaminase EF-hand", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 155, "start_aa": "Gly", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 308, "end_pos": 310 }, { "start_pos": 484, "end_pos": 486 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLE2-1", "uniprot_ac": "F1SLE2", "uniprot_id": "F1SLE2_PIG", "mass": { "chemical_mass": 22505.0, "monoisotopic_mass": 22505.0 }, "refseq": { "ac": "XP_003125087", "name": "protein TEX261", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125087" }, "gene_names": [ { "name": "TEX261", "type": "recommended", "evidence": [ { "id": "F1SLE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLE2" } ] }, { "name": "TEX261", "type": "synonym", "evidence": [ { "id": "XP_003125087", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125087" } ] } ], "protein_names": [ { "name": "Protein TEX261", "type": "recommended", "evidence": [ { "id": "F1SLE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLE2/entry#names_and_taxonomy" } ] }, { "name": "protein TEX261", "type": "synonym", "evidence": [ { "id": "XP_003125087", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125087" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLE2", "url": "https://www.uniprot.org/uniprotkb/F1SLE2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEX261", "url": "https://www.uniprot.org/uniprotkb/F1SLE2", "locus": { "chromosome": "3", "start_pos": 71548984, "end_pos": 71540380, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008317", "url": "https://www.ensembl.org/id/ENSSSCG00000008317" } ] } } ], "crossref": [ { "id": "F1SLE2", "url": "https://alphafold.ebi.ac.uk/entry/F1SLE2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008317", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008317", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522925", "url": "https://www.ncbi.nlm.nih.gov/gene/100522925", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522925", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522925", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TMGTEPV", "url": "https://omabrowser.org/oma/group/TMGTEPV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLE2", "url": "https://www.orthodb.org/?gene=F1SLE2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13144", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13144", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13144:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13144:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04148", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04148", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125087", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125087", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SLE2", "url": "https://www.uniprot.org/uniprotkb/F1SLE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLE2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLE2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWFMYVLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFEHFPTSMIGVGLFTNLVYFGLLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSLSAGENVLPSTMQPGDDVVSNYFTKGKRGKRLGILVVFSFIKEAILPSRQKIY", "length": 196, "header": "tr|F1SLE2-1|F1SLE2_PIG Isoform 1 of Protein TEX261 OS=Sus scrofa OX=9823 GN=TEX261 PE=3 SV=2 CANONICAL=F1SLE2-1" }, "isoforms": [ { "isoform_ac": "F1SLE2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLE2/entry#F1SLE2-1", "sequence": { "sequence": "MWFMYVLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFEHFPTSMIGVGLFTNLVYFGLLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSLSAGENVLPSTMQPGDDVVSNYFTKGKRGKRLGILVVFSFIKEAILPSRQKIY", "length": 196, "header": "tr|F1SLE2-1|F1SLE2_PIG Isoform 1 of Protein TEX261 OS=Sus scrofa OX=9823 GN=TEX261 PE=3 SV=2 CANONICAL=F1SLE2-1" }, "locus": { "chromosome": "3", "start_pos": 71546468, "end_pos": 71540501, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009108.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009108.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008879.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008879.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLE2", "url": "https://www.uniprot.org/uniprotkb/F1SLE2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522925", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522925", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3IBX7-1", "protein_name": "Protein TEX261", "gene_name": "Tex261", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWFMYVLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFEHFPTSMIGVGLFTNLVYFGLLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSLSAGENVLPSTMQPGDDVVSNYFTKGKRGKRLGILVVFSFIKEAILPSRQKIY", "length": 196 }, "evidence": [ { "id": "F1SLE2", "url": "https://omabrowser.org/oma/group/F1SLE2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P38869-1", "protein_name": "Protein SVP26", "gene_name": "SVP26", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLLELISYAGTVSGFLFLTLSIASGLYYISELVEEHTEPTRRFLTRAIYGIILILILLLLLDGFPFKLTLFSIACYIVYYQNLKSFPFISLTSPTFLLSCVCVVLNHYFWFKYFNDTEVPPQFKFDPNYIPRRRASFAEVASFFGICVWFIPFALFVSLSAGDYVLPTTSEQHMAKKNDDITTNNQPKFRKRAVGLARVVINSVRKYIYSLARVFGYEIEPDFDRLAV", "length": 228 }, "evidence": [ { "id": "F1SLE2", "url": "https://omabrowser.org/oma/group/F1SLE2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q54ER8-1", "protein_name": "Protein TEX261 homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFLSLLILLSYALGFVFCVVCLACGLYYFSELVEEHATVAKRWIKYTMWFVMGIIFLLGIFEDLDFTSLLFSFIGHCCYYTLLTEFPFVTLTGYKFILSVLSFIISHISWFIYFRNTENWYPFGEIIAIFTFCVWLIPLIFFISLAANDNSLPMANSYSSHSNSNIIGVDSEFTKKKSRISVLKSMFAWAKEKTSDITGQKSMKHYY", "length": 207 }, "evidence": [ { "id": "F1SLE2", "url": "https://omabrowser.org/oma/group/F1SLE2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5BJW3-1", "protein_name": "Protein TEX261", "gene_name": "Tex261", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFMYVLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSMIGVGLFTNLVYFGLLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSLSAGENVLPSTMQPGDDVVSNYFTKGKRGKRLGILVVFSFIKEAILPSRQKIY", "length": 196 }, "evidence": [ { "id": "F1SLE2", "url": "https://omabrowser.org/oma/group/F1SLE2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q62302-1", "protein_name": "Protein TEX261", "gene_name": "Tex261", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFMYVLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSMIGVGLFTNLVYFGLLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSLSAGENVLPSTMQPGDDVVSNYFTKGKRGKRLGILVVFSFIKEAILPSRQKIY", "length": 196 }, "evidence": [ { "id": "F1SLE2", "url": "https://omabrowser.org/oma/group/F1SLE2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6UWH6-1", "protein_name": "Protein TEX261", "gene_name": "TEX261", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWFMYLLSWLSLFIQVAFITLAVAAGLYYLAELIEEYTVATSRIIKYMIWFSTAVLIGLYVFERFPTSMIGVGLFTNLVYFGLLQTFPFIMLTSPNFILSCGLVVVNHYLAFQFFAEEYYPFSEVLAYFTFCLWIIPFAFFVSLSAGENVLPSTMQPGDDVVSNYFTKGKRGKRLGILVVFSFIKEAILPSRQKIY", "length": 196 }, "evidence": [ { "id": "F1SLE2", "url": "https://omabrowser.org/oma/group/F1SLE2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W1R8-1", "protein_name": "Protein TEX261", "gene_name": "Dmel\\CG3500", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAVLYLLGWVSLAIQIVFLTLSIVAGLYYLAELAEEYTTAARKCILFLISFTIFVYILLLLFEDLPWSLIICGLVAQGFHLGIMSGFPFVRLLSLPLLGSLAMLVVNHFLAFQHFVTVYVPFTQVLAYFTICMWIVPFALFVSLSANDSVLPTTVSDQSRRSPDVVSNYFSRNKKQGLLSLFQYLKEALLPGRTKKAF", "length": 198 }, "evidence": [ { "id": "F1SLE2", "url": "https://omabrowser.org/oma/group/F1SLE2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SLE2", "url": "https://www.uniprot.org/uniprotkb/F1SLE2" } ], "pmid": "" }, { "name": "COPII-coated ER to Golgi transport vesicle", "id": "GO:0030134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030134", "evidence": [ { "database": "UniProtKB", "id": "F1SLE2", "url": "https://www.uniprot.org/uniprotkb/F1SLE2" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SLE2", "url": "https://www.uniprot.org/uniprotkb/F1SLE2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "F1SLE2", "url": "https://www.uniprot.org/uniprotkb/F1SLE2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "COPII receptor activity", "id": "GO:0097020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097020", "evidence": [ { "database": "UniProtKB", "id": "F1SLE2", "url": "https://www.uniprot.org/uniprotkb/F1SLE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLE2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 196, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLE2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLE2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLF3-1", "uniprot_ac": "F1SLF3", "uniprot_id": "F1SLF3_PIG", "mass": { "chemical_mass": 28192.0, "monoisotopic_mass": 28192.0 }, "refseq": { "ac": "XP_003125078", "name": "homeobox protein notochord", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125078" }, "gene_names": [ { "name": "NOTO", "type": "recommended", "evidence": [ { "id": "F1SLF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ] }, { "name": "NOTO", "type": "synonym", "evidence": [ { "id": "XP_003125078", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125078" } ] } ], "protein_names": [ { "name": "Notochord homeobox", "type": "synonym", "evidence": [ { "id": "F1SLF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLF3/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein notochord", "type": "synonym", "evidence": [ { "id": "XP_003125078", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125078" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NOTO", "url": "https://www.uniprot.org/uniprotkb/F1SLF3", "locus": { "chromosome": "3", "start_pos": 69567449, "end_pos": 69571100, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000059555", "url": "https://www.ensembl.org/id/ENSSSCG00000059555" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008305", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008305", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521005", "url": "https://www.ncbi.nlm.nih.gov/gene/100521005", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521005", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521005", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CPATWLP", "url": "https://omabrowser.org/oma/group/CPATWLP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLF3", "url": "https://www.orthodb.org/?gene=F1SLF3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24339", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24339", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24339:SF68", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24339:SF68", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125078", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125078", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLF3-1", "url": "https://www.uniprot.org/uniprotkb/F1SLF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSLEPRGCRLLAPPATGVQPPRSDCSPPRAIPALPRSSAGPGAPRAPARLESSFSVEAILARPDPRGPAASPLSVPPGAAAGLWTAPPRPPVRILPGACPGTGPSAYLSAGLDLPCPQHPGLRLRAAHFCGLQGLGVTGLDLAHCLGLWGPRNWTPVQDLQDTERSQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAAQLNLTENQVRVWFQNRRVKYQKQQRLKVPTASAMAASPDEPSSSSDTSVQREDTEPGMDS", "length": 263, "header": "tr|F1SLF3-1|F1SLF3_PIG Isoform 1 of Notochord homeobox OS=Sus scrofa OX=9823 GN=NOTO PE=4 SV=2 CANONICAL=F1SLF3-1" }, "isoforms": [ { "isoform_ac": "F1SLF3-1", "url": "https://www.uniprot.org/uniprotkb/F1SLF3/entry#F1SLF3-1", "sequence": { "sequence": "MPSLEPRGCRLLAPPATGVQPPRSDCSPPRAIPALPRSSAGPGAPRAPARLESSFSVEAILARPDPRGPAASPLSVPPGAAAGLWTAPPRPPVRILPGACPGTGPSAYLSAGLDLPCPQHPGLRLRAAHFCGLQGLGVTGLDLAHCLGLWGPRNWTPVQDLQDTERSQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAAQLNLTENQVRVWFQNRRVKYQKQQRLKVPTASAMAASPDEPSSSSDTSVQREDTEPGMDS", "length": 263, "header": "tr|F1SLF3-1|F1SLF3_PIG Isoform 1 of Notochord homeobox OS=Sus scrofa OX=9823 GN=NOTO PE=4 SV=2 CANONICAL=F1SLF3-1" }, "locus": { "chromosome": "3", "start_pos": 69571045, "end_pos": 69568144, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009097.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009097.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008868.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008868.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521005", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521005", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A8MTQ0-1", "protein_name": "Homeobox protein notochord", "gene_name": "NOTO", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPSPRPRGSPPPAPSGSRVRPPRSGRSPAPRSPTGPNTPRAPGRFESPFSVEAILARPDPCAPAASQPSGSACVHPAFWTAASLCATGGLPWACPTSWLPAYLSVGFYPVPGPRVAPVCGLLGFGVTGLELAHCSGLWAFPDWAPTEDLQDTERQQKRVRTMFNLEQLEELEKVFAKQHNLVGKKRAQLAARLKLTENQVRVWFQNRRVKYQKQQKLRAAVTSAEAASLDEPSSSSIASIQSDDAESGVDG", "length": 251 }, "evidence": [ { "id": "F1SLF3", "url": "https://omabrowser.org/oma/group/F1SLF3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1M4Z8-1", "protein_name": "Notochord homeobox", "gene_name": "Noto", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSPVPQPASSGTQVQPGDLGPCPVAVSPVVPNHLARGRLESSFSVEAILARPETREHSATSLPLSTCTSLNFGSVSQYQVLPWVCSTGTWLPTYLSVGIYPMCSMSCMPGLNVTHLFCQQGLRLTGSELPSCLGPLKRAPTVNLQDHNTERHQKRVRTMFSEQQLGELEKVFAKQHNLVGKERAQLAARLHLTENQVRIWFQNRRVKYQKQQKLKSPPPDAMEEPSNSSEGNVRNEDAEAGVGS", "length": 245 }, "evidence": [ { "id": "F1SLF3", "url": "https://omabrowser.org/oma/group/F1SLF3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5TIS6-1", "protein_name": "Homeobox protein notochord", "gene_name": "Noto", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSPAPSGTQVQPGSLRPCPGAVSPVVPRRLARGRLESSFSVEAILARPKTRELAATSLPLSTCTSLNLLGAVSQYGVLPWVCSTGSWLPAYLSVGVYPLCSMSCVPGLNVTHHQQGLRLTGSELPYCLGPLKWAPTVDLRDHGTERHTKRVRTTFNLQQLQELEKVFAKQHNLVGKERAQLAARLHLTENQVRIWFQNRRVKYQKQQKLKLPSSSVMEEPSSSSDGNIQSEDAELGIGS", "length": 240 }, "evidence": [ { "id": "F1SLF3", "url": "https://omabrowser.org/oma/group/F1SLF3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ], "pmid": "" }, { "name": "central nervous system development", "id": "GO:0007417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007417", "evidence": [ { "database": "UniProtKB", "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ], "pmid": "" }, { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ], "pmid": "" }, { "name": "neuron differentiation", "id": "GO:0030182", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030182", "evidence": [ { "database": "UniProtKB", "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SLF3", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLF3" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 166, "end_pos": 226, "start_aa": "Arg", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 154, "end_pos": 156 }, { "start_pos": 206, "end_pos": 208 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLH2-1", "uniprot_ac": "F1SLH2", "uniprot_id": "F1SLH2_PIG", "mass": { "chemical_mass": 38619.0, "monoisotopic_mass": 38619.0 }, "refseq": { "ac": "XP_003125039", "name": "INO80 complex subunit B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125039" }, "gene_names": [ { "name": "INO80B", "type": "recommended", "evidence": [ { "id": "F1SLH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ] }, { "name": "INO80B", "type": "synonym", "evidence": [ { "id": "XP_003125039", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125039" } ] } ], "protein_names": [ { "name": "INO80 complex subunit B", "type": "synonym", "evidence": [ { "id": "XP_003125039", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125039" }, { "id": "F1SLH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLH2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "INO80B", "url": "https://www.uniprot.org/uniprotkb/F1SLH2", "locus": { "chromosome": "3", "start_pos": 68585040, "end_pos": 68588303, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008287", "url": "https://www.ensembl.org/id/ENSSSCG00000008287" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008287", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008287", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23021", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23021", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513402", "url": "https://www.ncbi.nlm.nih.gov/gene/100513402", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007529", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007529", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513402", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513402", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MPCGVIG", "url": "https://omabrowser.org/oma/group/MPCGVIG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLH2", "url": "https://www.orthodb.org/?gene=F1SLH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21561", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21561", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21561:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21561:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04438", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04438", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04795", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04795", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125039", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125039", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHYQEEEAGPTQPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLSGSLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLSLPVAGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRTAAPAPMVRYSSGAQGSTLSFPPGVPAPAPVSQRPSPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSPLLAT", "length": 356, "header": "tr|F1SLH2-1|F1SLH2_PIG Isoform 1 of INO80 complex subunit B OS=Sus scrofa OX=9823 GN=INO80B PE=4 SV=3 CANONICAL=F1SLH2-1" }, "isoforms": [ { "isoform_ac": "F1SLH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLH2/entry#F1SLH2-1", "sequence": { "sequence": "MSKLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHYQEEEAGPTQPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLSGSLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLSLPVAGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRTAAPAPMVRYSSGAQGSTLSFPPGVPAPAPVSQRPSPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSPLLAT", "length": 356, "header": "tr|F1SLH2-1|F1SLH2_PIG Isoform 1 of INO80 complex subunit B OS=Sus scrofa OX=9823 GN=INO80B PE=4 SV=3 CANONICAL=F1SLH2-1" }, "locus": { "chromosome": "3", "start_pos": 68588222, "end_pos": 68585129, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009076.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009076.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008847.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008847.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 60, "start_aa": "Thr", "end_pos": 60, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr60", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513402", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513402", "resource": "KEGG Pathway" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" } ], "orthologs": [ { "uniprot_canonical_ac": "F6QIL4-1", "protein_name": "INO80 complex subunit B", "gene_name": "INO80B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSECVSTIYSPLSSQGPMSKLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHYQEEEAGPTQQSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPVEGVPLEQYRAWLDEDSNLSPSPLRDLSGGLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLSLPVAGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGASRGERRGGRAVAPAPMVRYSSGAQGSTLSFPPGIPAPAPVSQRPSPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSPLLAT", "length": 373 }, "evidence": [ { "id": "F1SLH2", "url": "https://omabrowser.org/oma/group/F1SLH2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F7FBV1-1", "protein_name": "INO80 complex subunit B", "gene_name": "Ino80b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSACVPTVSSPLPLQDPMSKLWRRGSTSGAMEPPEPGETLELSLAGAHGHGVHKKKHKKHKKKHKKKHHQEEEAGPTLQAPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLPGDLEGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPTLPLPVAGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRAAAPAPAPMVRYSSGAQGSTLSFPPGVPTPAAVAQRPAPSGPAPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQLRLGGPEGPGSPLLAT", "length": 375 }, "evidence": [ { "id": "F1SLH2", "url": "https://omabrowser.org/oma/group/F1SLH2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99PT3-1", "protein_name": "INO80 complex subunit B", "gene_name": "Ino80b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSACVPTVSSPLPLQDPMSKLWRRGSTSGAMEAPEPGETLELSLAGAHGHGVHKKKHKKHKKKHKKKHHQEEEAGPTLQTPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLPGDLEGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPTLPLPVGGGCPAPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAAPSGRGGRGAARGERRGGRAAAPAPAPMVRYCSGAQGSTLSFPPGVPTPTAVAQRPAPSGPAPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQLRLGGPEGPGSPLLAT", "length": 375 }, "evidence": [ { "id": "F1SLH2", "url": "https://omabrowser.org/oma/group/F1SLH2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C086-1", "protein_name": "INO80 complex subunit B", "gene_name": "INO80B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSKLWRRGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHHQEEDAGPTQPSPAKPQLKLKIKLGGQVLGTKSVPTFTVIPEGPRSPSPLMVVDNEEEPMEGVPLEQYRAWLDEDSNLSPSPLRDLSGGLGGQEEEEEQRWLDALEKGELDDNGDLKKEINERLLTARQRALLQKARSQPSPMLPLPVAEGCPPPALTEEMLLKREERARKRRLQAARRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSGAQGSTLSFPPGVPAPTAVSQRPSPSGPPPRCSVPGCPHPRRYACSRTGQALCSLQCYRINLQMRLGGPEGPGSPLLAT", "length": 356 }, "evidence": [ { "id": "F1SLH2", "url": "https://omabrowser.org/oma/group/F1SLH2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of DNA strand elongation", "id": "GO:0060382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060382", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "pmid": "" }, { "name": "regulation of chromosome organization", "id": "GO:0033044", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033044", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "pmid": "" }, { "name": "regulation of DNA replication", "id": "GO:0006275", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006275", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "pmid": "" }, { "name": "Ino80 complex", "id": "GO:0031011", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031011", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "F1SLH2", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLH2" }, { "id": "SM01406", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01406" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "INO80 complex subunit B-like conserved region", "eco_id": "ECO_0000259", "start_pos": 211, "end_pos": 290, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 60 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 236, "end_pos": 238 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLL2-1", "uniprot_ac": "F1SLL2", "uniprot_id": "F1SLL2_PIG", "mass": { "chemical_mass": 81258.0, "monoisotopic_mass": 81258.0 }, "refseq": {}, "gene_names": [ { "name": "IL31RA", "type": "recommended", "evidence": [ { "id": "F1SLL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ] } ], "protein_names": [ { "name": "Interleukin-31 receptor subunit alpha", "type": "recommended", "evidence": [ { "id": "F1SLL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL2/entry#names_and_taxonomy" } ] }, { "name": "GLM-R", "type": "synonym", "evidence": [ { "id": "F1SLL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL2/entry#names_and_taxonomy" } ] }, { "name": "Gp130-like monocyte receptor", "type": "synonym", "evidence": [ { "id": "F1SLL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL2/entry#names_and_taxonomy" } ] }, { "name": "ZcytoR17", "type": "synonym", "evidence": [ { "id": "F1SLL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Associates with OSMR to form the interleukin-31 receptor which activates STAT3 and to a lower extent STAT1 and STAT5. May function in skin immunity. Mediates IL31-induced itch, probably in a manner dependent on cation channels TRPA1 and TRPV1. Positively regulates numbers and cycling status of immature subsets of myeloid progenitor cells in bone marrow in vivo and enhances myeloid progenitor cell survival in vitro.", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2#function" }, { "database": "UniProtKB", "id": "ARBA00056762", "url": "https://www.uniprot.org/uniprotkb/ARBA00056762#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IL31RA", "url": "https://www.uniprot.org/uniprotkb/F1SLL2", "locus": { "chromosome": "16", "start_pos": 35071381, "end_pos": 35012094, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016915", "url": "https://www.ensembl.org/id/ENSSSCG00000016915" } ] } } ], "crossref": [ { "id": "F1SLL2", "url": "https://alphafold.ebi.ac.uk/entry/F1SLL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016915", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016915", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052672", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052672", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48423", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48423", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48423:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48423:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6788467", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6788467", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TMWAWVPWMLPLLYKFGLAVLPAKPENISCIFYYKKNFTCTWSPEKEANFTWYTVKRTYIYGRISDTCNSTSERGSSCSFLYPRISIPDYSTIQVEAQNADGIIESDITHWNLNTVIKTEPPEISSVKPILGIKRMVQIKWARPVLAPVHSTLKYTLRFRMVDSAHWMEVNFMEGVFGEETFNLTGLQAFTEYVIALRCVAEGSRFWSDWSLEKMGITEEEAPHGLDLWRVLRPAKVDGRRPVQLLWKKAKGAPVLEKALGYNIWYFPENSTNLTETMNTTNQQLDLCLGGKTYWIYVISYNSHGDSPVATLRIPAIDEKSFQCIEAMQASLTQDLLVVEWQSSALEVDSWIVEWVPDMNSEPSTISWESVSGARNWTIQKDELKPFWCYNISVYPMLGDRVGEPYSIQAYVKEGVPLKGPTTRAENIGVKTVTIAWEEIPKNQRYGFINNYTIFYQAEDGKEFSKTVNASILQYNLESLTRKTSYTVQVMASTSAGGINGSSINFKTLSISVFEIFLRTSLVGGGLLILIILTVAYGLKKPNKLKHLCWPTVPNPAESSIAMWHGNDFKNKLNLKFNDSVNTEEDRILKLCSAPSDFIDKLVVTFENVLEELSTEEPEKGQENTLGGEKNEYVTSPYRPYCPPVSTETPPRRSQHPCSGMPEGTCSEAREQHLPSAQSLGPDHLCVDGSPNPYLKNSVTTREFLVSEKLPDQTQGEP", "length": 718, "header": "tr|F1SLL2-1|F1SLL2_PIG Isoform 1 of Interleukin-31 receptor subunit alpha OS=Sus scrofa OX=9823 GN=IL31RA PE=3 SV=4 CANONICAL=F1SLL2-1" }, "isoforms": [ { "isoform_ac": "F1SLL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLL2/entry#F1SLL2-1", "sequence": { "sequence": "TMWAWVPWMLPLLYKFGLAVLPAKPENISCIFYYKKNFTCTWSPEKEANFTWYTVKRTYIYGRISDTCNSTSERGSSCSFLYPRISIPDYSTIQVEAQNADGIIESDITHWNLNTVIKTEPPEISSVKPILGIKRMVQIKWARPVLAPVHSTLKYTLRFRMVDSAHWMEVNFMEGVFGEETFNLTGLQAFTEYVIALRCVAEGSRFWSDWSLEKMGITEEEAPHGLDLWRVLRPAKVDGRRPVQLLWKKAKGAPVLEKALGYNIWYFPENSTNLTETMNTTNQQLDLCLGGKTYWIYVISYNSHGDSPVATLRIPAIDEKSFQCIEAMQASLTQDLLVVEWQSSALEVDSWIVEWVPDMNSEPSTISWESVSGARNWTIQKDELKPFWCYNISVYPMLGDRVGEPYSIQAYVKEGVPLKGPTTRAENIGVKTVTIAWEEIPKNQRYGFINNYTIFYQAEDGKEFSKTVNASILQYNLESLTRKTSYTVQVMASTSAGGINGSSINFKTLSISVFEIFLRTSLVGGGLLILIILTVAYGLKKPNKLKHLCWPTVPNPAESSIAMWHGNDFKNKLNLKFNDSVNTEEDRILKLCSAPSDFIDKLVVTFENVLEELSTEEPEKGQENTLGGEKNEYVTSPYRPYCPPVSTETPPRRSQHPCSGMPEGTCSEAREQHLPSAQSLGPDHLCVDGSPNPYLKNSVTTREFLVSEKLPDQTQGEP", "length": 718, "header": "tr|F1SLL2-1|F1SLL2_PIG Isoform 1 of Interleukin-31 receptor subunit alpha OS=Sus scrofa OX=9823 GN=IL31RA PE=3 SV=4 CANONICAL=F1SLL2-1" }, "locus": { "chromosome": "16", "start_pos": 35065759, "end_pos": 35017668, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018421.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018421.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017924.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017924.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6788467", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6788467", "resource": "Reactome", "description": "IL-6-type cytokine receptor ligand interactions" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" }, { "name": "cytokine-mediated signaling pathway", "id": "GO:0019221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019221", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" }, { "name": "immune system process", "id": "GO:0002376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002376", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" }, { "name": "monocyte differentiation", "id": "GO:0030224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030224", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" }, { "name": "cell surface receptor signaling pathway via JAK-STAT", "id": "GO:0007259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007259", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "receptor complex", "id": "GO:0043235", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043235", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" }, { "name": "presynaptic membrane", "id": "GO:0042734", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042734", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cytokine binding", "id": "GO:0019955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019955", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" }, { "name": "cytokine receptor activity", "id": "GO:0004896", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004896", "evidence": [ { "database": "UniProtKB", "id": "F1SLL2", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 391, "end_pos": 393, "annotation": "n_glycosylation_sequon" }, { "start_pos": 451, "end_pos": 453, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 49, "end_pos": 51, "annotation": "n_glycosylation_sequon" }, { "start_pos": 500, "end_pos": 502, "annotation": "n_glycosylation_sequon" }, { "start_pos": 578, "end_pos": 580, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLL2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 718, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLL2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLL2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL2" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 121, "end_pos": 221, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 183, "end_pos": 185 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 273, "end_pos": 275 }, { "start_pos": 279, "end_pos": 281 }, { "start_pos": 27, "end_pos": 29 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 391, "end_pos": 393 }, { "start_pos": 451, "end_pos": 453 }, { "start_pos": 469, "end_pos": 471 }, { "start_pos": 49, "end_pos": 51 }, { "start_pos": 500, "end_pos": 502 }, { "start_pos": 578, "end_pos": 580 }, { "start_pos": 69, "end_pos": 71 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLL6-1", "uniprot_ac": "F1SLL6", "uniprot_id": "F1SLL6_PIG", "mass": { "chemical_mass": 117858.0, "monoisotopic_mass": 117858.0 }, "refseq": {}, "gene_names": [ { "name": "MTREX", "type": "recommended", "evidence": [ { "id": "F1SLL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ] } ], "protein_names": [ { "name": "Exosome RNA helicase MTR4", "type": "recommended", "evidence": [ { "id": "F1SLL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL6/entry#names_and_taxonomy" } ] }, { "name": "3.6.4.13", "type": "synonym", "evidence": [ { "id": "F1SLL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL6/entry#names_and_taxonomy" } ] }, { "name": "Superkiller viralicidic activity 2-like 2", "type": "synonym", "evidence": [ { "id": "F1SLL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL6/entry#names_and_taxonomy" } ] }, { "name": "TRAMP-like complex helicase", "type": "synonym", "evidence": [ { "id": "F1SLL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTREX", "url": "https://www.uniprot.org/uniprotkb/F1SLL6", "locus": { "chromosome": "16", "start_pos": 34606096, "end_pos": 34478272, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016911", "url": "https://www.ensembl.org/id/ENSSSCG00000016911" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016911", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016911", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13154", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13154", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18024", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18024", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18795", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18795", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518521", "url": "https://www.ncbi.nlm.nih.gov/gene/100518521", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016438", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016438", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518521", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518521", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IMLKNYN", "url": "https://omabrowser.org/oma/group/IMLKNYN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLL6", "url": "https://www.orthodb.org/?gene=F1SLL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12131", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12131", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12131:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12131:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08148", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08148", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13234", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13234", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21408", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21408", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9930044", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SLL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPPGSAEKAGKHFDGKLQTESTNIGKTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL", "length": 1042, "header": "tr|F1SLL6-1|F1SLL6_PIG Isoform 1 of Exosome RNA helicase MTR4 OS=Sus scrofa OX=9823 GN=MTREX PE=1 SV=3 CANONICAL=F1SLL6-1" }, "isoforms": [ { "isoform_ac": "F1SLL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SLL6/entry#F1SLL6-1", "sequence": { "sequence": "MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPPGSAEKAGKHFDGKLQTESTNIGKTKRDADFEGTDEPIFGKKLRVEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL", "length": 1042, "header": "tr|F1SLL6-1|F1SLL6_PIG Isoform 1 of Exosome RNA helicase MTR4 OS=Sus scrofa OX=9823 GN=MTREX PE=1 SV=3 CANONICAL=F1SLL6-1" }, "locus": { "chromosome": "16", "start_pos": 34604185, "end_pos": 34478507, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018417.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018417.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017920.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017920.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518521", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518521", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" }, { "id": "R-SSC-9930044", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "resource": "Reactome", "description": "Nuclear RNA decay" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061ICN7-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "Mtrex", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MADAFGDELFSVFEDDSTTAGTKKDKDKEKEKWKGPPASTDKAGKRLDAKLQSESASGGKNKRDVDVDGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADEEYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL", "length": 1041 }, "evidence": [ { "id": "F1SLL6", "url": "https://omabrowser.org/oma/group/F1SLL6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I5ZXU0-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "Mtrex", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADAFGDELFSVFEDDSTTAAGTKKDKEKEKDKWKGPPGPADKAGKRLDTRLQSEPASSGKNKRDLDVEGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEDHMTHPPIDQLLSAVSHCVWRSRENQELILSYYMGSGAETQALRLGSRHLYPLGHLAGPQHVFLTTGEVGESCTSEQGVSSRES", "length": 1109 }, "evidence": [ { "id": "F1SLL6", "url": "https://omabrowser.org/oma/group/F1SLL6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P42285-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "MTREX", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADAFGDELFSVFEGDSTTAAGTKKDKEKDKGKWKGPPGSADKAGKRFDGKLQSESTNNGKNKRDVDFEGTDEPIFGKKPRIEESITEDLSLADLMPRVKVQSVETVEGCTHEVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL", "length": 1042 }, "evidence": [ { "id": "F1SLL6", "url": "https://omabrowser.org/oma/group/F1SLL6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P47047-1", "protein_name": "ATP-dependent RNA helicase DOB1", "gene_name": "MTR4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDSTDLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKKIKSNKSKTEDKNKKVVVPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTHPANALSFLQPGRLVEISVNGKDNYGWGAVVDFAKRINKRNPSAVYTDHESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL", "length": 1073 }, "evidence": [ { "id": "F1SLL6", "url": "https://omabrowser.org/oma/group/F1SLL6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q86IE2-1", "protein_name": "Circadian oscillator component FRH", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEDDDLFSVFDTKKTNKNKRTREATAAADEKENGKWIKPEESTTTTTTTTATTNKNEIESNKTLNPNVKPLGALPNNSKIESMDTFKNTVGSVDLMSLDEEIQRNKKQKGGNTKQAVADISFNAKQSDTTLDKLRENVEKKEREELSMIEQQKQQNIIPENRTATGGYITAAGTSKSCIHEVLLPPGEVNDDPNLYNPPEPIKPARTYPFKLDPFQATSIACIERNESVLVSAHTSAGKTVVAEYSIATALRDGQRVIYTSPIKALSNQKFRDLQETFQDVGLMTGDITINANASCLVMTTEILRSMLYRGSETMREVSWVIFDEIHYLRDKERGVVWEETIILLPDSVKFVFLSATIPNAREFAAWIAKIHKQPCHVVYTEYRPIPLQHYIFPSGGDGLHLVVDENGVFREENFLKSLSNLQQPEMGGQSGASRKRGGGNKGPSDCYKIVKMIMERNYQPVIIFSFSKKECETYALQMSKLDFNNDDEKNAVETIFNNAIDSLSESDKQLPAVINILPLLKRGIGIHHAGLLPILKEIIEILFQYGYIKALFATETFSIGLNMPAKTVIFTSVRKFDGEGMRWISGGEYIQMSGRAGRRGLDERGIVILMVDEKMEPAIAKGMVKGQADRLTSSFWIGYSMLLNMLRVEDIDPENLLKRSFHQYQQESFIPQLVDKCDQMEQEKKEIIIRDETSVTEYSSIKAQLAKLREAMRDFINQPTYVQPFLTAGRIVRIREGSTDWGYGVILNFSKRPIKSSGSGVSDKSFEVIADILLECAISSDPTSNGGYIGTPKPCVPGEVGEGQIIPVSIKLFDGITSVCLYVKKEQPTQEFKTHLFKTLKETENRFKKDGGIPLIDPIEDMKIKDPNFKKLIKKIETLESRFSSTACFNDTDIEERCNLLEKKNEITKEIKQLQKQIKSGDEVILKDDLRSMKRILTRLGYITDDGVVALKGRVACEISAGDELVISELLFAGLFNDLSVEQCVAVFSCFVFQNEGSANNDVNNPKIKPDLVPLYRVIRDTASKVVTVSQECKLTSVDEKTYLASFNPNFMDVTFAWASGASFADIVKMTDTFEGNLIRGIRRLDELIRQMVIASKSIGNTELEAKFSEATVKIKRDIPFAGSLYL", "length": 1128 }, "evidence": [ { "id": "F1SLL6", "url": "https://omabrowser.org/oma/group/F1SLL6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9CZU3-1", "protein_name": "Exosome RNA helicase MTR4", "gene_name": "Mtrex", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADAFGDELFSVFEDDSTSAAGAKKDKEKEKWKGPPGSADKAGKRLDTKLQSESASGGKNKRDLDVEGTDEPIFGKKPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEENVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL", "length": 1040 }, "evidence": [ { "id": "F1SLL6", "url": "https://omabrowser.org/oma/group/F1SLL6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9XIF2-1", "protein_name": "DExH-box ATP-dependent RNA helicase DExH9", "gene_name": "MTR4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGSVKRKSVEESSDSAPPQKVQREDDSTQIINEELVGCVHDVSFPENYVPLAPSVHNKPPAKDFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLKENQRVIYTSPIKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEIMREVAWIIFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYVFPAGGNGLYLVVDEKSKFHEDSFQKSLNALVPTNESDKKRDNGKFQKGLVIGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKMEPAVAKSMLKGSADSLNSAFHLSYNMLLNQLRCEEGDPENLLRNSFFQFQADRAIPDLEKQIKSLEEERDSLVIEEEESLKNYYNLILQYKSLKKDIREIVFTPKYCLPFLLPNRAVCLDCTNDDEEPQSFSIEDQDTWGVIMKFNKVKSLSEDDDSRRPEDANYTVDVLTRCMVSKDGVGKKKVKAVPIKERGEPVVVTVPLSQIKSLSSAIMNIPKDLVPLEARENALKKVSELLSRHPDGIPLDPEVDMKIKSSSYKKTVRRLEALENLFEKHKIAKSPLITEKLKVLQMKEELIAKIKSLKKTVRSSTALAFKDELKARKRVLRRLGYITSDNVVELKGKVACEISSAEELTLTELMFSGIFKDAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKVEIDVESFVQSFRPDIMEAVYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGETQLEAKLEEAVSKIKRDIVFAASLYL", "length": 988 }, "evidence": [ { "id": "F1SLL6", "url": "https://omabrowser.org/oma/group/F1SLL6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9Y134-1", "protein_name": "RNA helicase", "gene_name": "Mtr4", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDIEELFDCFDEVTPSVPPPALNQEEKPSGSSASKKGNKRQADGTTASKEATSSKGAEGDDKGDVTEEPTKRLKQEASTVAVDDDNNADDEPTRTLDIDDSATLEALRTRIVTHLLDAPKSCTHEVAAHPDQEYIPLKPFSGVPAKEYPFVLDPFQRQAILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGIHLIVDEKGQFKEDNFTTAMAVLANAGEAGKGDQKGRHGGIKGTNAGQTNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKKFRWISSGEYIQMAGRAGRRGLDDKGIVILMIDEKVSPAVGRDIVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQAALPGLHDQVEQKTLELNKLTIKDEHNIASYHHIRSQLDQHGKQFRQWITKPQYLLPFLQPGRLVKVAAGSQEYDWGIVLNFKKQDQSRKNPLKAEPSVTIDVLLHVSEAAAKTGDTEPCKPNERGCMEVVPVAHTLITQISSIRVYFPNDLRSADNRRAVLKTIQEAKKRFPLGPPVLNPIDDMNIKDREFRDIVNTISQFEKRLEEHPLHKSPELERIHRRYQDKVTLQKQLQDLKAELKAARSLLQMDELKHRKRVLRRMGYCKPGDVIEFKGRVACELSSADELLMTEMIFNGVFNDLTAPQAVALLSCFVCDEKSSESVKSATELSGPLRSMQDLARRIAKVSTECKLDLDADTYVDKFKPFLMDVVLAWCKGSSFLAVCKMTDIFEGSIIRCMRRLEELLRQMCQASKTIGNTDLENKFSEGIRLLKRDIVFAASLYL", "length": 1055 }, "evidence": [ { "id": "F1SLL6", "url": "https://omabrowser.org/oma/group/F1SLL6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "RNA helicase activity", "id": "GO:0003724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003724", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "nuclear exosome (RNase complex)", "id": "GO:0000176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000176", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "TRAMP complex", "id": "GO:0031499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031499", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "maturation of 5.8S rRNA", "id": "GO:0000460", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000460", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" }, { "name": "RNA catabolic process", "id": "GO:0006401", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006401", "evidence": [ { "database": "UniProtKB", "id": "F1SLL6", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 676, "end_pos": 678, "annotation": "n_glycosylation_sequon" }, { "start_pos": 917, "end_pos": 919, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] }, { "id": "R-SSC-6791218", "name": "12S pre-rRNA is nucleolytically processed to yield 5.8S rRNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6791218", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791218" } ] }, { "id": "R-SSC-6791222", "name": "21S pre-rRNA is nucleolytically processed at site E (site2a) to yield 18SE pre-rRNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6791222", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791222" } ] }, { "id": "R-SSC-6791227", "name": "47S pre-rRNA is nucleolytically processed at A' (01,A1), site A0, and site 02 (site 6) to yield 45S pre-rRNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6791227", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791227" } ] }, { "id": "R-SSC-9770141", "name": "Formation of the Spliceosomal C* complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-5688092", "R-SSC-5688093", "R-SSC-72073", "R-SSC-9769591", "R-SSC-9769593", "R-SSC-9769594", "R-SSC-9769596", "R-SSC-9769598", "R-SSC-9769599", "R-SSC-9769601" ], "output_participant_list": [ "R-SSC-72060", "R-SSC-8867898", "R-SSC-9770419", "R-SSC-9770425", "R-SSC-9770427", "R-SSC-9770428", "R-SSC-9770430" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9770141", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770141" } ] }, { "id": "R-SSC-9770236", "name": "Formation of the Spliceosomal P complex and exon ligation", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-9769588", "R-SSC-9769590", "R-SSC-9769602" ], "output_participant_list": [ "R-SSC-6791189", "R-SSC-8849139", "R-SSC-8952113", "R-SSC-9769562" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9770236", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770236" } ] }, { "id": "R-SSC-9794542", "name": "Formation of the Spliceosomal C complex containing intron lariat", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9794542", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9794542" } ] }, { "id": "R-SSC-9930056", "name": "The NEXT complex and ZC3H18 bind CBCA:m7GpppN-RNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9930056", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930056" } ] }, { "id": "R-SSC-9930059", "name": "The NEXT complex binds ZC3H4:WDR82:CBCA:m7GpppN-RNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9930059", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930059" } ] }, { "id": "R-SSC-9933559", "name": "The PAXT connection (ZFC3H1:MTREX, ZFC3H1:MTR4), RBM26, RBM27, PAPOLG, YTHDC1, and YTHDC2 bind CBCA:polyadenylated m7GpppN-RNA:PABPN1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9933559", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9933559" } ] }, { "id": "R-SSC-9933575", "name": "MTREX (MTR4, SKIV2L2) in PAXT:RBM26:RBM27:ZC3H3:YTHDC1:YTHDC2:CBCA:polyadenylated m7GpppN-RNA:PABPN1 binds the RNA exosome", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9933575", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9933575" } ] }, { "id": "R-SSC-9933585", "name": "RNA exosome in PAXT:PAPOLG:TENT4A,B:ZC3H3:CBCA:polyadenylated m7GpppN-RNA:PABPN1 hydrolyzes RNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9933585", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9933585" } ] }, { "id": "R-SSC-9934522", "name": "NEXT:ZC3H18:CBCA:m7GpppN-RNA binds the RNA exosome", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9934522", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9934522" } ] }, { "id": "R-SSC-9934763", "name": "The RNA exosome in RNA exosome:NEXT:ZC3H18:CBCA:m7GpppN-RNA hydrolyzes RNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9934763", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9934763" } ] }, { "id": "R-SSC-9935282", "name": "NEXT:ZC3H4:CBCA:m7GpppN-RNA binds the RNA exosome", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9935282", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9935282" } ] }, { "id": "R-SSC-9935290", "name": "The RNA exosome in RNA exosome:NEXT:ZC3H4:WDR82:CBCA:capped RNA hydrolyzes capped RNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9935290", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9935290" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-5688092", "participant_name": "DHX8 [nucleoplasm]", "crossref": [ { "id": "F1S1H3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000017378", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000018412", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000018917", "database": "ENSEMBL", "url": "" }, { "id": "87298", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-5688093", "participant_name": "PRPF18 [nucleoplasm]", "crossref": [ { "id": "A0A4X1VY37", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000026354", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000027625", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000024330", "database": "ENSEMBL", "url": "" }, { "id": "NP_001231788.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-6791189", "participant_name": "MTREX [nucleoplasm]", "crossref": [ { "id": "F1SLL6", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000017920", "database": "ENSEMBL", "url": "" }, { "id": "90470", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000018417", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000016911", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-72060", "participant_name": "DHX38 [nucleoplasm]", "crossref": [ { "id": "F1S3A8", "database": "UniProt", "url": "" }, { "id": "XP_020949516.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000002966", "database": "ENSEMBL", "url": "" }, { "id": "87294", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000003045", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000002748", "database": "ENSEMBL", "url": "" }, { "id": "XP_020949515.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-72073", "participant_name": "SLU7 [nucleoplasm]", "crossref": [ { "id": "F1RR54", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000017033", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000018045", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000018545", "database": "ENSEMBL", "url": "" }, { "id": "XP_003134141.1", "database": "RefSeq", "url": "" }, { "id": "93214", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-8849139", "participant_name": "DDX39B [nucleoplasm]", "crossref": [ { "id": "XP_005665850.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000001487", "database": "ENSEMBL", "url": "" }, { "id": "NP_001005157.1", "database": "RefSeq", "url": "" }, { "id": "Q29024", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000001529", "database": "ENSEMBL", "url": "" }, { "id": "XP_005665851.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCG00000001400", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-8867898", "participant_name": "CWC25 [nucleoplasm]", "crossref": [ { "id": "ENSSSCT00000053706", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000021478", "database": "ENSEMBL", "url": "" }, { "id": "87096", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000032040", "database": "ENSEMBL", "url": "" }, { "id": "A0A286ZKR9", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-8952113", "participant_name": "PPIL4 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000023314", "database": "ENSEMBL", "url": "" }, { "id": "91699", "database": "VGNC", "url": "" }, { "id": "I3LGX0", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000024741", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000028867", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769562", "participant_name": "PPIL2 [nucleoplasm]", "crossref": [ { "id": "ENSSSCG00000010083", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000056926", "database": "ENSEMBL", "url": "" }, { "id": "91698", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000040807", "database": "ENSEMBL", "url": "" }, { "id": "A0A287AAH2", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-9769588", "participant_name": "C1H9orf78 [nucleoplasm]", "crossref": [ { "id": "F1RQE0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000030426", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000022510", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000024953", "database": "ENSEMBL", "url": "" }, { "id": "85975", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769590", "participant_name": "LENG1 [nucleoplasm]", "crossref": [ { "id": "F1RNH2", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000003265", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000003541", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000003626", "database": "ENSEMBL", "url": "" }, { "id": "XP_003127463.2", "database": "RefSeq", "url": "" }, { "id": "89680", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769591", "participant_name": "CACTIN [nucleoplasm]", "crossref": [ { "id": "A0A287BJU2", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000032085", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000056347", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000037250", "database": "ENSEMBL", "url": "" }, { "id": "86131", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769593", "participant_name": "SDE2 [nucleoplasm]", "crossref": [ { "id": "A0A8W4FFC9", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000010858", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000078134", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000092221", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769594", "participant_name": "PRKRIP1 [nucleoplasm]", "crossref": [ { "id": "A0A5G2QNT3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000042324", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000065720", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000069793", "database": "ENSEMBL", "url": "" }, { "id": "XP_005661993.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9769596", "participant_name": "STEEP1 [nucleoplasm]", "crossref": [ { "id": "F2Z566", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000012622", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000013420", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000013801", "database": "ENSEMBL", "url": "" }, { "id": "87113", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769598", "participant_name": "FAM32A [nucleoplasm]", "crossref": [ { "id": "A0A4X1UYF2", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000013855", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000014729", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000015134", "database": "ENSEMBL", "url": "" }, { "id": "NP_001230816.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9769599", "participant_name": "FAM50A [nucleoplasm]", "crossref": [ { "id": "A0A5G2QKU3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000025303", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000064609", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000089389", "database": "ENSEMBL", "url": "" }, { "id": "87972", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769601", "participant_name": "DDX41 [nucleoplasm]", "crossref": [ { "id": "A0A287AWY6", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000032642", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000048662", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000059325", "database": "ENSEMBL", "url": "" }, { "id": "87221", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769602", "participant_name": "NKAP [nucleoplasm]", "crossref": [ { "id": "A0A5G2RJX5", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000012613", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000072270", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000085170", "database": "ENSEMBL", "url": "" }, { "id": "90756", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9770419", "participant_name": "GPATCH1 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000003085", "database": "ENSEMBL", "url": "" }, { "id": "XP_020949947.1", "database": "RefSeq", "url": "" }, { "id": "F1RNW7", "database": "UniProt", "url": "" }, { "id": "88573", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000003166", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000002865", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9770425", "participant_name": "WDR70 [nucleoplasm]", "crossref": [ { "id": "ENSSSCT00000018344", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000016846", "database": "ENSEMBL", "url": "" }, { "id": "94937", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000017848", "database": "ENSEMBL", "url": "" }, { "id": "F1SN94", "database": "UniProt", "url": "" }, { "id": "XP_020932620.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9770427", "participant_name": "DHX35 [nucleoplasm]", "crossref": [ { "id": "95678", "database": "VGNC", "url": "" }, { "id": "ENSSSCG00000007352", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000063112", "database": "ENSEMBL", "url": "" }, { "id": "A0A287B5Q0", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000051779", "database": "ENSEMBL", "url": "" }, { "id": "XP_001929057.3", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9770428", "participant_name": "NSRP1 [nucleoplasm]", "crossref": [ { "id": "A0A8D1TUT0", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000018853", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000019367", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000017795", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9770430", "participant_name": "YJU2 [nucleoplasm]", "crossref": [ { "id": "ENSSSCG00000013499", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000072636", "database": "ENSEMBL", "url": "" }, { "id": "95033", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000068755", "database": "ENSEMBL", "url": "" }, { "id": "A0A5G2QX80", "database": "UniProt", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 148, "end_pos": 304, "start_aa": "Ile", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SLL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL6" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 405, "end_pos": 577, "start_aa": "Gln", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 154, "end_pos": 156 }, { "start_pos": 676, "end_pos": 678 }, { "start_pos": 917, "end_pos": 919 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLL7-1", "uniprot_ac": "F1SLL7", "uniprot_id": "F1SLL7_PIG", "mass": { "chemical_mass": 34919.0, "monoisotopic_mass": 34919.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SLL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SLL7", "url": "https://www.uniprot.org/uniprotkb/F1SLL7#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLL7", "url": "https://www.uniprot.org/uniprotkb/F1SLL7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SLL7", "locus": {} } ], "crossref": [ { "id": "F1SLL7", "url": "https://alphafold.ebi.ac.uk/entry/F1SLL7", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SLL7", "url": "https://www.uniprot.org/uniprotkb/F1SLL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311, "header": "tr|F1SLL7-1|F1SLL7_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SLL7-1" }, "isoforms": [ { "isoform_ac": "F1SLL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SLL7/entry#F1SLL7-1", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311, "header": "tr|F1SLL7-1|F1SLL7_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SLL7-1" }, "locus": { "chromosome": "1", "start_pos": 263255886, "end_pos": 263254954, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006104.3", "url": "https://www.ensembl.org/id/ENSSSCT00000006104.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005949.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005949.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLL7", "url": "https://www.uniprot.org/uniprotkb/F1SLL7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F2Z5L2-1", "protein_name": "Histone H2A", "gene_name": "H2AC18", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "F1SLL7", "url": "https://omabrowser.org/oma/group/F1SLL7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SLL7", "url": "https://www.uniprot.org/uniprotkb/F1SLL7" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SLL7", "url": "https://www.uniprot.org/uniprotkb/F1SLL7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SLL7", "url": "https://www.uniprot.org/uniprotkb/F1SLL7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SLL7", "url": "https://www.uniprot.org/uniprotkb/F1SLL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLL7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLL7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLL7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL7" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLL9-1", "uniprot_ac": "F1SLL9", "uniprot_id": "F1SLL9_PIG", "mass": { "chemical_mass": 36669.0, "monoisotopic_mass": 36669.0 }, "refseq": { "ac": "XP_020937923", "name": "olfactory receptor 1L3-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937923" }, "gene_names": [ { "name": "LOC100153261", "type": "recommended", "evidence": [ { "id": "F1SLL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL9" } ] }, { "name": "LOC100153261", "type": "synonym", "evidence": [ { "id": "XP_020937923", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937923" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SLL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL9/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 1L3-like", "type": "synonym", "evidence": [ { "id": "XP_020937923", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937923" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SLL9", "url": "https://www.uniprot.org/uniprotkb/F1SLL9#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLL9", "url": "https://www.uniprot.org/uniprotkb/F1SLL9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100153261", "url": "https://www.uniprot.org/uniprotkb/F1SLL9", "locus": {} } ], "crossref": [ { "id": "F1SLL9", "url": "https://alphafold.ebi.ac.uk/entry/F1SLL9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15235", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15235", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153261", "url": "https://www.ncbi.nlm.nih.gov/gene/100153261", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153261", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153261", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ANKIHRS", "url": "https://omabrowser.org/oma/group/ANKIHRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLL9", "url": "https://www.orthodb.org/?gene=F1SLL9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020937923", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937923", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SLL9", "url": "https://www.uniprot.org/uniprotkb/F1SLL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLL9-1", "url": "https://www.uniprot.org/uniprotkb/F1SLL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGMSNLTRLSEFILLGLSSHPEDQKPLFVLFLIMYLVTVMGNLLIILAIRSDPQLQNPMYFFLSVLSFADICYTTVIVPKMLVNFLSETKTISYNECLAQMYFFLAFGNMDSYLLAAMAIDRYVAICNPFHYVTVMNHRRCVLLLATFTAFSYLHSLLHVLLVSRLTFCASNVIHHFFCDVNPILKLACSSTSVNRVVAMTEGLASVMAPFSCIVISYLRILIAILKIPSASGKRKAFSTCSSHLTVVTLFYGSISYVYLQPLSSYSVKDRIATVIYTVLTSMLNPFIYSLRNKDMKRGLEKLISRIKSHMDRLFTAKSMKTCGP", "length": 325, "header": "tr|F1SLL9-1|F1SLL9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100153261 PE=3 SV=2 CANONICAL=F1SLL9-1" }, "isoforms": [ { "isoform_ac": "F1SLL9-1", "url": "https://www.uniprot.org/uniprotkb/F1SLL9/entry#F1SLL9-1", "sequence": { "sequence": "MGMSNLTRLSEFILLGLSSHPEDQKPLFVLFLIMYLVTVMGNLLIILAIRSDPQLQNPMYFFLSVLSFADICYTTVIVPKMLVNFLSETKTISYNECLAQMYFFLAFGNMDSYLLAAMAIDRYVAICNPFHYVTVMNHRRCVLLLATFTAFSYLHSLLHVLLVSRLTFCASNVIHHFFCDVNPILKLACSSTSVNRVVAMTEGLASVMAPFSCIVISYLRILIAILKIPSASGKRKAFSTCSSHLTVVTLFYGSISYVYLQPLSSYSVKDRIATVIYTVLTSMLNPFIYSLRNKDMKRGLEKLISRIKSHMDRLFTAKSMKTCGP", "length": 325, "header": "tr|F1SLL9-1|F1SLL9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100153261 PE=3 SV=2 CANONICAL=F1SLL9-1" }, "locus": { "chromosome": "AEMK02000598.1", "start_pos": 1146779, "end_pos": 1145805, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006102.3", "url": "https://www.ensembl.org/id/ENSSSCT00000006102.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005947.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005947.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLL9", "url": "https://www.uniprot.org/uniprotkb/F1SLL9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153261", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153261", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SLL9", "url": "https://www.uniprot.org/uniprotkb/F1SLL9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SLL9", "url": "https://www.uniprot.org/uniprotkb/F1SLL9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SLL9", "url": "https://www.uniprot.org/uniprotkb/F1SLL9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SLL9", "url": "https://www.uniprot.org/uniprotkb/F1SLL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLL9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 325, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLL9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLL9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLL9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLN1-1", "uniprot_ac": "F1SLN1", "uniprot_id": "F1SLN1_PIG", "mass": { "chemical_mass": 38392.0, "monoisotopic_mass": 38392.0 }, "refseq": { "ac": "XP_005672504", "name": "cyclin-O", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672504" }, "gene_names": [ { "name": "CCNO", "type": "recommended", "evidence": [ { "id": "F1SLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ] }, { "name": "CCNO", "type": "synonym", "evidence": [ { "id": "XP_005672504", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672504" } ] } ], "protein_names": [ { "name": "Cyclin-O", "type": "recommended", "evidence": [ { "id": "F1SLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLN1/entry#names_and_taxonomy" } ] }, { "name": "cyclin-O", "type": "synonym", "evidence": [ { "id": "XP_005672504", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672504" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCNO", "url": "https://www.uniprot.org/uniprotkb/F1SLN1", "locus": { "chromosome": "16", "start_pos": 34386749, "end_pos": 34390547, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026849", "url": "https://www.ensembl.org/id/ENSSSCG00000026849" } ] } } ], "crossref": [ { "id": "ENSSSCG00000026849", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026849", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20536", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20536", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20722", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20722", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517790", "url": "https://www.ncbi.nlm.nih.gov/gene/100517790", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517790", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517790", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CSPRISH", "url": "https://omabrowser.org/oma/group/CSPRISH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLN1", "url": "https://www.orthodb.org/?gene=F1SLN1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00134", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00134", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02984", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02984", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005672504", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672504", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVTPCPTSPASPATRAGRRDNQNLRAPVKKSRRPRLRRKQPLQALNPCLLPGDSGVCDLFESPSSGSDAADSPAPSTAPRCNSLPGPAQQLVQLDLQTFRDYGQTCYAFLKARENHFHPRESLARQPQVTAESRCKLLSWLIPVHRQFGLSFESLCLTVNTLDRFLITTPVAADCFQLLGVTSLLIACKQVEVHPPRVKQLLALCCGAFSRQQLCNLECIVLHKLHFSLGAPTISFFLEHFTHARVEAGQAEASEALEAQALARGVAELSLADYSFTSYTPSLLAICCLALADRMLQLPHPLDLGLGGHPEAALQDCLDKLQLLVAINGTSLTHMLPRQICEKCRLALSLK", "length": 351, "header": "tr|F1SLN1-1|F1SLN1_PIG Isoform 1 of Cyclin-O OS=Sus scrofa OX=9823 GN=CCNO PE=3 SV=1 CANONICAL=F1SLN1-1" }, "isoforms": [ { "isoform_ac": "F1SLN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1/entry#F1SLN1-1", "sequence": { "sequence": "MVTPCPTSPASPATRAGRRDNQNLRAPVKKSRRPRLRRKQPLQALNPCLLPGDSGVCDLFESPSSGSDAADSPAPSTAPRCNSLPGPAQQLVQLDLQTFRDYGQTCYAFLKARENHFHPRESLARQPQVTAESRCKLLSWLIPVHRQFGLSFESLCLTVNTLDRFLITTPVAADCFQLLGVTSLLIACKQVEVHPPRVKQLLALCCGAFSRQQLCNLECIVLHKLHFSLGAPTISFFLEHFTHARVEAGQAEASEALEAQALARGVAELSLADYSFTSYTPSLLAICCLALADRMLQLPHPLDLGLGGHPEAALQDCLDKLQLLVAINGTSLTHMLPRQICEKCRLALSLK", "length": 351, "header": "tr|F1SLN1-1|F1SLN1_PIG Isoform 1 of Cyclin-O OS=Sus scrofa OX=9823 GN=CCNO PE=3 SV=1 CANONICAL=F1SLN1-1" }, "locus": { "chromosome": "16", "start_pos": 34390516, "end_pos": 34388435, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023229.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023229.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024574.1", "url": "https://www.ensembl.org/id/ENSSSCP00000024574.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517790", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517790", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZHT5-1", "protein_name": "Cyclin-O", "gene_name": "Ccno", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LDVPGPASPASGAGRQDNHQNLRAPVKKSRRPRLRRKEPLRPLNACSLPGDSGVCDLFESPSSSSDGADSPAVSAVRDCSSLLSSAQPLTALDLQTFREYGQSCYDFRKAQENLFHPRESLARQPQVTAESRCKLLSWLLQVHRQFGLSFESLCLTVNTLDRFLLTTPVAADCFQLLGVTCLLIACKQVEVHPPRMKQLLALCGGAFSRQQLCNLECIVLHKLHFSLGAPTINFFLEHFTHSRVEAGQVEVTEALAAQTLARGVAELSLTDYAFTTYTPSLLAICCLALADRMLRHQRLMDLRLGEHPEATLLDCLGKLQKLVSINSSSLTHMLPAHIWEKCSLPQSWK", "length": 349 }, "evidence": [ { "id": "F1SLN1", "url": "https://omabrowser.org/oma/group/F1SLN1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3MXI9-1", "protein_name": "Cyclin-O", "gene_name": "CCNO", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVTPGPTSPTSPMSPAAWAARQDARNLRAPVKKSRRPRLRRKQPLQPLNISPLPGDSGVCDLFESPSSGSDGTDSPAARDCSPVPGAAQQLAQLDLQTFRDYGQSCYAFRKAREGRFHPRESLARQPQVTAESRCKLLSWLIPVHRQFGLSFESLCLTVNTLDRFLSTTPVAADCFQLLGVTSLLIACKQVEVHPPRVKQLLALCCGAFSRQQLCNLECIVLHKLHFSLGAPTISFFLEHFTHARVEAGQAEVSEALEAQALARGVAELSLADYAFTSYTPSLLAICCLALADRMLQLPRPMDLRLGGHPEAALQDCLGKLQLLVAINGTSLTHMLPLQIREKCCLSSSLK", "length": 351 }, "evidence": [ { "id": "F1SLN1", "url": "https://omabrowser.org/oma/group/F1SLN1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C242-1", "protein_name": "Cyclin-O", "gene_name": "Ccno", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVTPCPASPGSPAAGAGRRDSHQNLRAPVKKSRRPCLRRKKPLRPLNACSLPGDSGVCDLFESPSSSSDGADSPAVSAARDCSSLLNPAQPLTALDLQTFREYGQSCYDFRKAQENLFHPRESLARQPQVTAESRCKLLSWLLQVHRQFGLSFESLCLTVNTLDRFLLTTPVAADCFQLLGVTCLLIACKQVEVHPPRLKQLLALCGGAFSRQQLCNLECIVLHKLHFSLGAPTINFFLEHFTQWRMEAGQAEVTEALEAQTLARGVAELSLTDYAFTTYTPSLMAICCLALADGLLQHQHEMDLRLGEHPEATLQDCLGKLQTLVSINSSSLPRILPPQIWERCSLPQSWQ", "length": 352 }, "evidence": [ { "id": "F1SLN1", "url": "https://omabrowser.org/oma/group/F1SLN1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P22674-1", "protein_name": "Cyclin-O", "gene_name": "CCNO", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVTPCPTSPSSPAARAGRRDNDQNLRAPVKKSRRPRLRRKQPLHPLNPCPLPGDSGICDLFESPSSGSDGAESPSAARGGSPLPGPAQPVAQLDLQTFRDYGQSCYAFRKAQESHFHPREALARQPQVTAESRCKLLSWLIPVHRQFGLSFESLCLTVNTLDRFLTTTPVAADCFQLLGVTSLLIACKQVEVHPPRVKQLLALCCGAFSRQQLCNLECIVLHKLHFTLGAPTISFFLEHFTHARVEAGQAEASEALEAQALARGVAELSLADYAFTSYSPSLLAICCLALADRMLRVSRPVDLRLGDHPEAALEDCMGKLQLLVAINSTSLTHMLPVQICEKCSLPPSSK", "length": 350 }, "evidence": [ { "id": "F1SLN1", "url": "https://omabrowser.org/oma/group/F1SLN1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "multi-ciliated epithelial cell differentiation", "id": "GO:1903251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903251", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" }, { "name": "G1/S transition of mitotic cell cycle", "id": "GO:0000082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000082", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" }, { "name": "microtubule organizing center", "id": "GO:0005815", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005815", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" }, { "name": "cyclin-dependent protein kinase holoenzyme complex", "id": "GO:0000307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000307", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cyclin-dependent protein serine/threonine kinase regulator activity", "id": "GO:0016538", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016538", "evidence": [ { "database": "UniProtKB", "id": "F1SLN1", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" }, { "id": "SM01332", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01332" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin C-terminal", "eco_id": "ECO_0000259", "start_pos": 232, "end_pos": 348, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SLN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLN1" }, { "id": "SM00385", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00385" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin-like", "eco_id": "ECO_0000259", "start_pos": 139, "end_pos": 223, "start_aa": "Ser", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 328, "end_pos": 330 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLN9-1", "uniprot_ac": "F1SLN9", "uniprot_id": "F1SLN9_PIG", "mass": { "chemical_mass": 35185.0, "monoisotopic_mass": 35185.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100517451", "type": "recommended", "evidence": [ { "id": "F1SLN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLN9" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SLN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLN9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SLN9", "url": "https://www.uniprot.org/uniprotkb/F1SLN9#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLN9", "url": "https://www.uniprot.org/uniprotkb/F1SLN9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100517451", "url": "https://www.uniprot.org/uniprotkb/F1SLN9", "locus": {} } ], "crossref": [ { "id": "F1SLN9", "url": "https://alphafold.ebi.ac.uk/entry/F1SLN9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032805", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032805", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15918", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15918", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NRELFII", "url": "https://omabrowser.org/oma/group/NRELFII/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR48001", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48001", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SLN9", "url": "https://www.uniprot.org/uniprotkb/F1SLN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLN9-1", "url": "https://www.uniprot.org/uniprotkb/F1SLN9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SSMRSQNQSIVSKFILLGLPIHPEQQGLLFALFLGMYLTTVLGNLLIILLIRLDPHLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSISYAGCVTQVYFFIFFACIDNLLLAVMAYDRYVAICHPLRYTIIMREELCLCLLAGCWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLAALFKLSCSDTSLNELVIYTSGAAVFIFPLSGILVSYGRIGISILRVPSTKGIFKALSTCGSHLSVVSLFYGTIIAVYFSPSFGQSHYKDIIASVMYTVVTPMLNPFIYSLRNRDMTLALGIIFRNKNLFTT", "length": 315, "header": "tr|F1SLN9-1|F1SLN9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100517451 PE=3 SV=4 CANONICAL=F1SLN9-1" }, "isoforms": [ { "isoform_ac": "F1SLN9-1", "url": "https://www.uniprot.org/uniprotkb/F1SLN9/entry#F1SLN9-1", "sequence": { "sequence": "SSMRSQNQSIVSKFILLGLPIHPEQQGLLFALFLGMYLTTVLGNLLIILLIRLDPHLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSISYAGCVTQVYFFIFFACIDNLLLAVMAYDRYVAICHPLRYTIIMREELCLCLLAGCWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLAALFKLSCSDTSLNELVIYTSGAAVFIFPLSGILVSYGRIGISILRVPSTKGIFKALSTCGSHLSVVSLFYGTIIAVYFSPSFGQSHYKDIIASVMYTVVTPMLNPFIYSLRNRDMTLALGIIFRNKNLFTT", "length": 315, "header": "tr|F1SLN9-1|F1SLN9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100517451 PE=3 SV=4 CANONICAL=F1SLN9-1" }, "locus": { "chromosome": "1", "start_pos": 262616128, "end_pos": 262615184, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006092.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006092.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005937.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005937.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLN9", "url": "https://www.uniprot.org/uniprotkb/F1SLN9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SLN9", "url": "https://www.uniprot.org/uniprotkb/F1SLN9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SLN9", "url": "https://www.uniprot.org/uniprotkb/F1SLN9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SLN9", "url": "https://www.uniprot.org/uniprotkb/F1SLN9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SLN9", "url": "https://www.uniprot.org/uniprotkb/F1SLN9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLN9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 315, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLN9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLN9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLN9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 292, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLR6-1", "uniprot_ac": "F1SLR6", "uniprot_id": "F1SLR6_PIG", "mass": { "chemical_mass": 90304.0, "monoisotopic_mass": 90304.0 }, "refseq": { "ac": "NP_001231175", "name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231175" }, "gene_names": [ { "name": "NOP2", "type": "recommended", "evidence": [ { "id": "F1SLR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ] }, { "name": "NOP2", "type": "synonym", "evidence": [ { "id": "NP_001231175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231175" } ] } ], "protein_names": [ { "name": "Nucleolar protein 1", "type": "recommended", "evidence": [ { "id": "F1SLR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR6/entry#names_and_taxonomy" } ] }, { "name": "28S rRNA (cytosine(4447)-C(5))-methyltransferase", "type": "synonym", "evidence": [ { "id": "NP_001231175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231175" } ] }, { "name": "NOP2 nucleolar protein homolog", "type": "synonym", "evidence": [ { "id": "NP_001231175", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231175" } ] }, { "name": "Nucleolar protein 2 homolog", "type": "synonym", "evidence": [ { "id": "F1SLR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR6/entry#names_and_taxonomy" } ] }, { "name": "Proliferating-cell nucleolar antigen p120", "type": "synonym", "evidence": [ { "id": "F1SLR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR6/entry#names_and_taxonomy" } ] }, { "name": "Proliferation-associated nucleolar protein p120", "type": "synonym", "evidence": [ { "id": "F1SLR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the C(5) position of cytosine 4447 in 28S rRNA. Required for efficient rRNA processing and 60S ribosomal subunit biogenesis. Regulates pre-rRNA processing through non-catalytic complex formation with box C/D snoRNAs and facilitates the recruitment of U3 and U8 snoRNAs to pre-90S ribosomal particles and their stable assembly into snoRNP complexes. May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation.", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6#function" }, { "database": "UniProtKB", "id": "ARBA00056352", "url": "https://www.uniprot.org/uniprotkb/ARBA00056352#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NOP2", "url": "https://www.uniprot.org/uniprotkb/F1SLR6", "locus": { "chromosome": "5", "start_pos": 64115579, "end_pos": 64106098, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000696", "url": "https://www.ensembl.org/id/ENSSSCG00000000696" } ] } } ], "crossref": [ { "id": "F1SLR6", "url": "https://alphafold.ebi.ac.uk/entry/F1SLR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000696", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000696", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02440", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02440", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516080", "url": "https://www.ncbi.nlm.nih.gov/gene/100516080", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001678", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001678", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516080", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516080", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SLR6", "url": "https://www.orthodb.org/?gene=F1SLR6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22807", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22807", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22807:SF30", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22807:SF30", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01189", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01189", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22458", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22458", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231175", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231175", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SLR6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAAGDENSKRLSSRARKRAAKRRLGSAEVRETNKSPGARPLPGKLPKGAVQTPSKKGALSLFNAAQGKKRPASAYSSEEEGEEEDSEEGGVVNEGDLWGSEDSDADMVDDYGANSSSEDEEEDDSEELLPIERAARKQKAQEAVTGSQWSEEETEEEEEESPESGPREDDETEGGLQINVDEEEPFVLPLAGEMEQDAQAPDLQRVHKRIQDIVGVLRDFGTQREEGRSRAEYLQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISNYDGRQFPKVVGGFDRVLLDAPCSGTGIISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVSATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSATSTPTNPDLPSPKGEVTPKPERSSQPAKKARVAVQAKQRLQKRQLPKKASFQKQNGVSKGTGSELSTVSSVTKVQPSSKLQDSKQPAEKAVVVREPKVAGRLKQSPKLQSSKKVAFPKQCVPPKGMDPEIPPVPSLSKTQDAFKPEDCNQPLGNTTTGAEKVKQQLPEQSFKKTAFQKQNGTPKGPKTPTMSPRSSSRPPPAKRRKSQSRGSSQPLPSSVDG", "length": 821, "header": "tr|F1SLR6-1|F1SLR6_PIG Isoform 1 of Nucleolar protein 1 OS=Sus scrofa OX=9823 GN=NOP2 PE=3 SV=4 CANONICAL=F1SLR6-1" }, "isoforms": [ { "isoform_ac": "F1SLR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SLR6/entry#F1SLR6-1", "sequence": { "sequence": "MGRKLDPTKEKRGPGRKARKQKGAETELVRFLPAAGDENSKRLSSRARKRAAKRRLGSAEVRETNKSPGARPLPGKLPKGAVQTPSKKGALSLFNAAQGKKRPASAYSSEEEGEEEDSEEGGVVNEGDLWGSEDSDADMVDDYGANSSSEDEEEDDSEELLPIERAARKQKAQEAVTGSQWSEEETEEEEEESPESGPREDDETEGGLQINVDEEEPFVLPLAGEMEQDAQAPDLQRVHKRIQDIVGVLRDFGTQREEGRSRAEYLQRLRKDLATYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANAERLKSVVGNLHRLGVTNTIISNYDGRQFPKVVGGFDRVLLDAPCSGTGIISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVSATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQSQTGNSATSTPTNPDLPSPKGEVTPKPERSSQPAKKARVAVQAKQRLQKRQLPKKASFQKQNGVSKGTGSELSTVSSVTKVQPSSKLQDSKQPAEKAVVVREPKVAGRLKQSPKLQSSKKVAFPKQCVPPKGMDPEIPPVPSLSKTQDAFKPEDCNQPLGNTTTGAEKVKQQLPEQSFKKTAFQKQNGTPKGPKTPTMSPRSSSRPPPAKRRKSQSRGSSQPLPSSVDG", "length": 821, "header": "tr|F1SLR6-1|F1SLR6_PIG Isoform 1 of Nucleolar protein 1 OS=Sus scrofa OX=9823 GN=NOP2 PE=3 SV=4 CANONICAL=F1SLR6-1" }, "locus": { "chromosome": "5", "start_pos": 64115468, "end_pos": 64106502, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000758.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000758.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000742.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000742.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 357, "start_aa": "Thr", "end_pos": 357, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr357", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "rRNA (cytosine-C5-)-methyltransferase activity", "id": "GO:0009383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009383", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "pmid": "" }, { "name": "regulation of signal transduction by p53 class mediator", "id": "GO:1901796", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901796", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "pmid": "" }, { "name": "ribosomal large subunit assembly", "id": "GO:0000027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000027", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "pmid": "" }, { "name": "rRNA base methylation", "id": "GO:0070475", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070475", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "pmid": "" }, { "name": "maturation of LSU-rRNA", "id": "GO:0000470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000470", "evidence": [ { "database": "UniProtKB", "id": "F1SLR6", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" }, { "start_pos": 753, "end_pos": 755, "annotation": "n_glycosylation_sequon" }, { "start_pos": 779, "end_pos": 781, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLR6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 821, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLR6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLR6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLR6" }, { "id": "PS51686", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51686" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM-dependent MTase RsmB/NOP-type", "eco_id": "ECO_0000259", "start_pos": 299, "end_pos": 586, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 357 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 65, "end_pos": 67 }, { "start_pos": 753, "end_pos": 755 }, { "start_pos": 779, "end_pos": 781 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLS2-1", "uniprot_ac": "F1SLS2", "uniprot_id": "F1SLS2_PIG", "mass": { "chemical_mass": 24802.0, "monoisotopic_mass": 24802.0 }, "refseq": { "ac": "XP_003483373", "name": "zinc finger BED domain-containing protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483373" }, "gene_names": [ { "name": "ZBED2", "type": "recommended", "evidence": [ { "id": "F1SLS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLS2" } ] }, { "name": "ZBED2", "type": "synonym", "evidence": [ { "id": "XP_003483373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483373" } ] } ], "protein_names": [ { "name": "Zinc finger BED-type containing 2", "type": "synonym", "evidence": [ { "id": "F1SLS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLS2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger BED domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "XP_003483373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483373" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLS2", "url": "https://www.uniprot.org/uniprotkb/F1SLS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZBED2", "url": "https://www.uniprot.org/uniprotkb/F1SLS2", "locus": { "chromosome": "13", "start_pos": 148158766, "end_pos": 148156549, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011936", "url": "https://www.ensembl.org/id/ENSSSCG00000011936" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011936", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011936", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517972", "url": "https://www.ncbi.nlm.nih.gov/gene/100517972", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043471", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043471", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517972", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517972", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GHHPNQY", "url": "https://omabrowser.org/oma/group/GHHPNQY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLS2", "url": "https://www.orthodb.org/?gene=F1SLS2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35827", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35827", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35827:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35827:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02892", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02892", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483373", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483373", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SLS2", "url": "https://www.uniprot.org/uniprotkb/F1SLS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRREEEEEEGTRMKAKGHLEVKEEEEVSETGELVGPLAGAVPTPMPHNKGSRFSEAWEYFHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHKEELEKGGHGQAGQRQDPSLQGPQLPMGIEGDWARLLEQVGALALWASQREREILRRERAVEWRERAVERRERALEEVERAILEMKRKIRAEKEACQREKDQPTAAHPFHFV", "length": 217, "header": "tr|F1SLS2-1|F1SLS2_PIG Isoform 1 of Zinc finger BED-type containing 2 OS=Sus scrofa OX=9823 GN=ZBED2 PE=4 SV=3 CANONICAL=F1SLS2-1" }, "isoforms": [ { "isoform_ac": "F1SLS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SLS2/entry#F1SLS2-1", "sequence": { "sequence": "MRREEEEEEGTRMKAKGHLEVKEEEEVSETGELVGPLAGAVPTPMPHNKGSRFSEAWEYFHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHKEELEKGGHGQAGQRQDPSLQGPQLPMGIEGDWARLLEQVGALALWASQREREILRRERAVEWRERAVERRERALEEVERAILEMKRKIRAEKEACQREKDQPTAAHPFHFV", "length": 217, "header": "tr|F1SLS2-1|F1SLS2_PIG Isoform 1 of Zinc finger BED-type containing 2 OS=Sus scrofa OX=9823 GN=ZBED2 PE=4 SV=3 CANONICAL=F1SLS2-1" }, "locus": { "chromosome": "13", "start_pos": 148158521, "end_pos": 148157871, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013060.3", "url": "https://www.ensembl.org/id/ENSSSCT00000013060.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012716.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012716.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 43, "start_aa": "Thr", "end_pos": 43, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr43", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLS2", "url": "https://www.uniprot.org/uniprotkb/F1SLS2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517972", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517972", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9STY2-1", "protein_name": "Zinc finger BED-type containing 2", "gene_name": "ZBED2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRREEEEEDGNRMKAKGRLEVKEEEEISEAGEPVAPFVGATPTPMPHNKGTRFSEAWEYFHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHKDELEKSGHGQAGQRQDPRPQGSQLPTGIEGDWARLLEQMGALALWASQREKELLRRERAVEWRERAVERRERALEEVERAILEMRRKVRAEKEACQREKDQSGAAHPFHFV", "length": 217 }, "evidence": [ { "id": "F1SLS2", "url": "https://omabrowser.org/oma/group/F1SLS2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BTP6-1", "protein_name": "Zinc finger BED domain-containing protein 2", "gene_name": "ZBED2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMRREDEEEEGTMMKAKGDLEMKEEEEISETGELVGPFVSAMPTPMPHNKGTRFSEAWEYFHLAPARAGHHPNQYATCRLCGRQVSRGPGVNVGTTALWKHLKSMHREELEKSGHGQAGQRQDPRPHGPQLPTGIEGNWGRLLEQVGTMALWASQREKEVLRRERAVEWRERAVEKRERALEEVERAILEMKWKVRAEKEACQREKELPAAVHPFHFV", "length": 218 }, "evidence": [ { "id": "F1SLS2", "url": "https://omabrowser.org/oma/group/F1SLS2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SLS2", "url": "https://www.uniprot.org/uniprotkb/F1SLS2" } ], "pmid": "" }, { "name": "positive regulation of keratinocyte differentiation", "id": "GO:0045618", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045618", "evidence": [ { "database": "UniProtKB", "id": "F1SLS2", "url": "https://www.uniprot.org/uniprotkb/F1SLS2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SLS2", "url": "https://www.uniprot.org/uniprotkb/F1SLS2" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SLS2", "url": "https://www.uniprot.org/uniprotkb/F1SLS2" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SLS2", "url": "https://www.uniprot.org/uniprotkb/F1SLS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLS2" }, { "id": "PS50808", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50808" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BED-type", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 112, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 43 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLT3-1", "uniprot_ac": "F1SLT3", "uniprot_id": "F1SLT3_PIG", "mass": { "chemical_mass": 55393.0, "monoisotopic_mass": 55393.0 }, "refseq": {}, "gene_names": [ { "name": "LAG3", "type": "recommended", "evidence": [ { "id": "F1SLT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ] } ], "protein_names": [ { "name": "Lymphocyte activation gene 3 protein", "type": "recommended", "evidence": [ { "id": "F1SLT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLT3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May function as a ligand for MHC class II (MHC-II) on antigen-presenting cells (APC), promoting APC activation/maturation and driving Th1 immune response.", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3#function" }, { "database": "UniProtKB", "id": "ARBA00057112", "url": "https://www.uniprot.org/uniprotkb/ARBA00057112#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LAG3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3", "locus": { "chromosome": "5", "start_pos": 63929625, "end_pos": 63935410, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000688", "url": "https://www.ensembl.org/id/ENSSSCG00000000688" } ] } } ], "crossref": [ { "id": "F1SLT3", "url": "https://alphafold.ebi.ac.uk/entry/F1SLT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000688", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000688", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015621", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015621", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LWVAPVE", "url": "https://omabrowser.org/oma/group/LWVAPVE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11890", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11890", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11890:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11890:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13895", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13895", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2132295", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SLT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEAHFLIWLLLQLLCAAAVEAPDPRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPDRGPAAPSPQSPGPRRYTVLRVAPGGLRIGRPPLQPRVQLEERGLQRGDFSLWLRPARRDDAGEYRAAVSLRDRDRALVCLLRLRVGQAAVTASPPGSLWTSHWVILNCSFSRPDFPASVHWFRGPGRVPVQESPHQHLVGNFLFLSQISPLDSGTWGCIITYRDGFNVSITYNLTVLGLQPPVPLTVYAAAGATVDLPCHLPRGVGTQSSLTATWTPPGGGPDLLVAGDHGNFTLRLEAVSQAQAGTYTCRVHLQGQQLSATVTLAVITVTPKSSGLPGNPKKLLCEVTPASGQERFVWSSLDKRSWRSSPGPWLVLQEARLLSQPWQCQLYEGERLLGTAGYFTELSRPGAQRSGGALGAQKTGHLPFLILGTLLLLLLVSGAISFHVWRRRWRPRRFSALEHGTHPPQAQSKTGELEPEPELEPEPELEVEPQPEQP", "length": 507, "header": "tr|F1SLT3-1|F1SLT3_PIG Isoform 1 of Lymphocyte activation gene 3 protein OS=Sus scrofa OX=9823 GN=LAG3 PE=3 SV=1 CANONICAL=F1SLT3-1" }, "isoforms": [ { "isoform_ac": "F1SLT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SLT3/entry#F1SLT3-1", "sequence": { "sequence": "MGEAHFLIWLLLQLLCAAAVEAPDPRAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRTGQVTWQHLPDRGPAAPSPQSPGPRRYTVLRVAPGGLRIGRPPLQPRVQLEERGLQRGDFSLWLRPARRDDAGEYRAAVSLRDRDRALVCLLRLRVGQAAVTASPPGSLWTSHWVILNCSFSRPDFPASVHWFRGPGRVPVQESPHQHLVGNFLFLSQISPLDSGTWGCIITYRDGFNVSITYNLTVLGLQPPVPLTVYAAAGATVDLPCHLPRGVGTQSSLTATWTPPGGGPDLLVAGDHGNFTLRLEAVSQAQAGTYTCRVHLQGQQLSATVTLAVITVTPKSSGLPGNPKKLLCEVTPASGQERFVWSSLDKRSWRSSPGPWLVLQEARLLSQPWQCQLYEGERLLGTAGYFTELSRPGAQRSGGALGAQKTGHLPFLILGTLLLLLLVSGAISFHVWRRRWRPRRFSALEHGTHPPQAQSKTGELEPEPELEPEPELEVEPQPEQP", "length": 507, "header": "tr|F1SLT3-1|F1SLT3_PIG Isoform 1 of Lymphocyte activation gene 3 protein OS=Sus scrofa OX=9823 GN=LAG3 PE=3 SV=1 CANONICAL=F1SLT3-1" }, "locus": { "chromosome": "5", "start_pos": 63935054, "end_pos": 63929672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000750.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000750.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000734.1", "url": "https://www.ensembl.org/id/ENSSSCP00000000734.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2132295", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "resource": "Reactome", "description": "MHC class II antigen presentation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZMF0-1", "protein_name": "Lymphocyte activation gene 3 protein", "gene_name": "LAG3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRPVSPVLFLTLLAVNAGNILPGAAEVENRGQKVWAREGSSALLPCYLSPRKHGKSRKHLSGRTSVLWKRHGASAPQELHVVLEVEYTGLRKTALPMRPRVSVLDSALRNGNFSLCINPVRSDDVGLYEAQVAYNTEILSCQVELGVVTVTLSPPLPVVENEPLLLSCNSSHQASLVETCWFHNGRPVLISGAFCSSHGALYILRPTVSDSGSWHCQLRYADNEIISATYNLQILGFDGPTNPVVYAAAGSAADLPCTLNYLPSASGIRVVKAHWSHFAGGHLQNWSILQNQSSRNFPLHLPVVGPGDAGRYCCAVTVGNKMLSRDMTLAVITVTPRIQGPVSEGSHLLLTCSLTNPQGHEYFQWKHLSSASAEKKLTVATSHNLKDSRVRTGPTLEIPQVSQKDVGIWECSVYGPEGRLGAVEYGLQITGAQVSGPPTIFSGQVTFGLMLTLFFLLMVCILALGLQKRARLPASFPALERIVAVTVPKEMEESQKETIQQTEC", "length": 504 }, "evidence": [ { "id": "F1SLT3", "url": "https://omabrowser.org/oma/group/F1SLT3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B7C1-1", "protein_name": "Lymphocyte activation gene 3 protein", "gene_name": "LAG3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLWEAWFQVWLFLQLLWAAAVEAPEPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLPRTRQVTWQHVPESGSAAPTPRGPGPRRYTVLRLAPGGLRIGKLPLQPRVQLEEMGLQRGDFSLWLRPARRADAGEYHAAVRFGNRALACRLRLRVGQAAVTASPPGPLWTSSWVVLNCSFSRPDLPASVHWFRGPGRVPVQESPHHHLVGNFLFLPQVSSLDSGTWGCSLTYRDGFNVSITYNLAVLGLEPRATLTVYAGAGSKVELPCRLPPGVGIQSSLTAMWTPPGEGPDLLVAGDRNNFTLRLEAVGQAQAGTYTCRVHLQGRQLSATVTLAVITVTPKPYGSSGSLRKPFCEVTPASGQERFVWSPLDKRSQRRSPGPWLLTPDARPLSQPWQCHLYQGERLLGTAVYLTELSHPGAQRSGRALGAGRTAHLPLLILGLLFLLLLVTGASSFHLWRRQWRPRRFSALEHGTHPSQASSKTGELEPELEPEPDPEVEPEPEPEPESQPQLQPEQP", "length": 516 }, "evidence": [ { "id": "F1SLT3", "url": "https://omabrowser.org/oma/group/F1SLT3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P18627-1", "protein_name": "Lymphocyte activation gene 3 protein", "gene_name": "LAG3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWEAQFLGLLFLQPLWVAPVKPLQPGAEVPVVWAQEGAPAQLPCSPTIPLQDLSLLRRAGVTWQHQPDSGPPAAAPGHPLAPGPHPAAPSSWGPRPRRYTVLSVGPGGLRSGRLPLQPRVQLDERGRQRGDFSLWLRPARRADAGEYRAAVHLRDRALSCRLRLRLGQASMTASPPGSLRASDWVILNCSFSRPDRPASVHWFRNRGQGRVPVRESPHHHLAESFLFLPQVSPMDSGPWGCILTYRDGFNVSIMYNLTVLGLEPPTPLTVYAGAGSRVGLPCRLPAGVGTRSFLTAKWTPPGGGPDLLVTGDNGDFTLRLEDVSQAQAGTYTCHIHLQEQQLNATVTLAIITVTPKSFGSPGSLGKLLCEVTPVSGQERFVWSSLDTPSQRSFSGPWLEAQEAQLLSQPWQCQLYQGERLLGAAVYFTELSSPGAQRSGRAPGALPAGHLLLFLILGVLSLLLLVTGAFGFHLWRRQWRPRRFSALEQGIHPPQAQSKIEELEQEPEPEPEPEPEPEPEPEPEQL", "length": 525 }, "evidence": [ { "id": "F1SLT3", "url": "https://omabrowser.org/oma/group/F1SLT3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5BK54-1", "protein_name": "Lymphocyte activation gene 3 protein", "gene_name": "Lag3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRQDLFLDLLLLQLLWEAPVVSSGPGKELSVVWAQEGAPVHLPCSLEFPHLDPNFLRRGWVTWQHRPDSDQPASIPALDLLQGMPSTRRHPPHRYTVLSVAPGGLRSGRQPLLSHVQLEKRGPQRGDFSLWLRPATRKDAGEYHAFVRLPDRDFSCSLRLRVGQASMIASPPGTLKPSDWVILNCSFSRPDRPVSVHWFQGQSRVPVHNSPRHYLAESFLLLPQVSPLDSGTWGCVLTYRDGFNVSITYNLKVQGLEPVAPLTVYAAEGSRVELPCHLPPVVGTPSLLIAKWTPPGGGPELPVTGKSGNFTLQLENVGRAQAGTYTCSIHLQGRQLSAAVTLAVITVTPKSFGLPGSPQKLLCEVVPASGEGRFVWRPLSDLSRSSLGPVLELQEAKLLAEQWQCQLYEGQKLLGATVYTAESSSGAWSAKRISGDLKGGHLFLSLILGALALFLLVTGAFGFHLWRRQLLRRRFSALEHGIRPPPVQSKIEELEREPETEMEPETEPDPEPQPEPELEPESRQL", "length": 525 }, "evidence": [ { "id": "F1SLT3", "url": "https://omabrowser.org/oma/group/F1SLT3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q61790-1", "protein_name": "Lymphocyte activation gene 3 protein", "gene_name": "Lag3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MREDLLLGFLLLGLLWEAPVVSSGPGKELPVVWAQEGAPVHLPCSLKSPNLDPNFLRRGGVIWQHQPDSGQPTPIPALDLHQGMPSPRQPAPGRYTVLSVAPGGLRSGRQPLHPHVQLEERGLQRGDFSLWLRPALRTDAGEYHATVRLPNRALSCSLRLRVGQASMIASPSGVLKLSDWVLLNCSFSRPDRPVSVHWFQGQNRVPVYNSPRHFLAETFLLLPQVSPLDSGTWGCVLTYRDGFNVSITYNLKVLGLEPVAPLTVYAAEGSRVELPCHLPPGVGTPSLLIAKWTPPGGGPELPVAGKSGNFTLHLEAVGLAQAGTYTCSIHLQGQQLNATVTLAVITVTPKSFGLPGSRGKLLCEVTPASGKERFVWRPLNNLSRSCPGPVLEIQEARLLAERWQCQLYEGQRLLGATVYAAESSSGAHSARRISGDLKGGHLVLVLILGALSLFLLVAGAFGFHWWRKQLLLRRFSALEHGIQPFPAQRKIEELERELETEMGQEPEPEPEPQLEPEPRQL", "length": 521 }, "evidence": [ { "id": "F1SLT3", "url": "https://omabrowser.org/oma/group/F1SLT3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "plasmacytoid dendritic cell activation", "id": "GO:0002270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002270", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" }, { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" }, { "name": "negative regulation of T cell receptor signaling pathway", "id": "GO:0050860", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050860", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" }, { "name": "negative regulation of regulatory T cell differentiation", "id": "GO:0045590", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045590", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" }, { "name": "negative regulation of T cell mediated immune response to tumor cell", "id": "GO:0002841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002841", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" }, { "name": "MHC class II protein binding", "id": "GO:0042289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042289", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SLT3", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLT3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 507, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLT3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLT3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLT3" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 172, "end_pos": 243, "start_aa": "Val", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 175, "end_pos": 177 }, { "start_pos": 235, "end_pos": 237 }, { "start_pos": 241, "end_pos": 243 }, { "start_pos": 300, "end_pos": 302 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLW5-1", "uniprot_ac": "F1SLW5", "uniprot_id": "F1SLW5_PIG", "mass": { "chemical_mass": 23820.0, "monoisotopic_mass": 23820.0 }, "refseq": { "ac": "XP_003126559", "name": "single-stranded DNA cytosine deaminase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126559" }, "gene_names": [ { "name": "AICDA", "type": "recommended", "evidence": [ { "id": "F1SLW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ] }, { "name": "AICDA", "type": "synonym", "evidence": [ { "id": "XP_003126559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126559" } ] } ], "protein_names": [ { "name": "Single-stranded DNA cytosine deaminase", "type": "recommended", "evidence": [ { "id": "F1SLW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLW5/entry#names_and_taxonomy" } ] }, { "name": "3.5.4.38", "type": "synonym", "evidence": [ { "id": "F1SLW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLW5/entry#names_and_taxonomy" } ] }, { "name": "Activation-induced cytidine deaminase", "type": "synonym", "evidence": [ { "id": "F1SLW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLW5/entry#names_and_taxonomy" } ] }, { "name": "Cytidine aminohydrolase", "type": "synonym", "evidence": [ { "id": "F1SLW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLW5/entry#names_and_taxonomy" } ] }, { "name": "single-stranded DNA cytosine deaminase", "type": "synonym", "evidence": [ { "id": "XP_003126559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126559" } ] } ], "function": [ { "annotation": "Single-stranded DNA-specific cytidine deaminase. Involved in somatic hypermutation (SHM), gene conversion, and class-switch recombination (CSR) in B-lymphocytes by deaminating C to U during transcription of Ig-variable (V) and Ig-switch (S) region DNA. Required for several crucial steps of B-cell terminal differentiation necessary for efficient antibody responses. May also play a role in the epigenetic regulation of gene expression by participating in DNA demethylation.", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5#function" }, { "database": "UniProtKB", "id": "ARBA00055025", "url": "https://www.uniprot.org/uniprotkb/ARBA00055025#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AICDA", "url": "https://www.uniprot.org/uniprotkb/F1SLW5", "locus": { "chromosome": "5", "start_pos": 62787369, "end_pos": 62777352, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000667", "url": "https://www.ensembl.org/id/ENSSSCG00000000667" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000667", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000667", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01283", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01283", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100526050", "url": "https://www.ncbi.nlm.nih.gov/gene/100526050", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016193", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016193", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050610", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050610", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526050", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526050", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CSLLMKQ", "url": "https://omabrowser.org/oma/group/CSLLMKQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLW5", "url": "https://www.orthodb.org/?gene=F1SLW5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13857", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13857", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13857:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13857:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126559", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "50948", "url": "https://www.rhea-db.org/rhea/50948", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SLW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSLLMKQRQFLYQFKNVRWAKGRHETYLCYVVKRRDSATSFSLDFGHLRNKSGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVANFLRGNPNLSLRIFTARLYFCDGYKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENRERSFKAWEGLHENSVRLTRQLRRILLPLYEVDDLRDAFRTLGL", "length": 198, "header": "tr|F1SLW5-1|F1SLW5_PIG Isoform 1 of Single-stranded DNA cytosine deaminase OS=Sus scrofa OX=9823 GN=AICDA PE=3 SV=3 CANONICAL=F1SLW5-1" }, "isoforms": [ { "isoform_ac": "F1SLW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SLW5/entry#F1SLW5-1", "sequence": { "sequence": "MDSLLMKQRQFLYQFKNVRWAKGRHETYLCYVVKRRDSATSFSLDFGHLRNKSGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVANFLRGNPNLSLRIFTARLYFCDGYKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENRERSFKAWEGLHENSVRLTRQLRRILLPLYEVDDLRDAFRTLGL", "length": 198, "header": "tr|F1SLW5-1|F1SLW5_PIG Isoform 1 of Single-stranded DNA cytosine deaminase OS=Sus scrofa OX=9823 GN=AICDA PE=3 SV=3 CANONICAL=F1SLW5-1" }, "locus": { "chromosome": "5", "start_pos": 62785922, "end_pos": 62777439, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000723.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000723.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000708.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000708.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100526050", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526050", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BVI0-1", "protein_name": "Single-stranded DNA cytosine deaminase", "gene_name": "AICDA", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDSLLMKRKLFLYNFKNLRWAKGRRETYLCYVVKRRDSATSCSLDFGYLRNKMGCHVEVLFLRYISAWDLDPGRCYRITWFTSWSPCYDCARHVADFLRAYPNLTLRIFTARLYFCEDRKAEPEGLRRLHRAGAQIAIMTFKDFFYCWNTFVENREKTFKAWEGLHENSVHLSRKLRRILLPLYEVDDLRDAFKTLGL", "length": 198 }, "evidence": [ { "id": "F1SLW5", "url": "https://omabrowser.org/oma/group/F1SLW5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MV53-1", "protein_name": "Single-stranded DNA cytosine deaminase", "gene_name": "AICDA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSLLMKQRQFLYQFKNVRWAKGRHETYLCYVVKRRDSPTSFSLDFGHLRNKAGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGYPNLSLRIFTARLYFCDKERKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL", "length": 199 }, "evidence": [ { "id": "F1SLW5", "url": "https://omabrowser.org/oma/group/F1SLW5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3V7Y8-1", "protein_name": "Single-stranded DNA cytosine deaminase", "gene_name": "Aicda", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSLLMKQKKFLYHFKNVRWAKGRHETYLCYVVKRRDSATSFSLDFGHLRNKSGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAEFLRWNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIGIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLTRQLRRILLPLYEVDDLRDAFRILGL", "length": 198 }, "evidence": [ { "id": "F1SLW5", "url": "https://omabrowser.org/oma/group/F1SLW5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9GZX7-1", "protein_name": "Single-stranded DNA cytosine deaminase", "gene_name": "AICDA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKRRDSATSFSLDFGYLRNKNGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYFYCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL", "length": 198 }, "evidence": [ { "id": "F1SLW5", "url": "https://omabrowser.org/oma/group/F1SLW5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9WVE0-1", "protein_name": "Single-stranded DNA cytosine deaminase", "gene_name": "Aicda", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSLLMKQKKFLYHFKNVRWAKGRHETYLCYVVKRRDSATSCSLDFGHLRNKSGCHVELLFLRYISDWDLDPGRCYRVTWFTSWSPCYDCARHVAEFLRWNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIGIMTFKDYFYCWNTFVENRERTFKAWEGLHENSVRLTRQLRRILLPLYEVDDLRDAFRMLGF", "length": 198 }, "evidence": [ { "id": "F1SLW5", "url": "https://omabrowser.org/oma/group/F1SLW5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "regulation of nuclear cell cycle DNA replication", "id": "GO:0033262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033262", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "positive regulation of gene expression via chromosomal CpG island demethylation", "id": "GO:0044029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044029", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "mRNA processing", "id": "GO:0006397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006397", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "cytidine to uridine editing", "id": "GO:0016554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016554", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "DNA cytosine deamination", "id": "GO:0070383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070383", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "negative regulation of single stranded viral RNA replication via double stranded DNA intermediate", "id": "GO:0045869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045869", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "somatic hypermutation of immunoglobulin genes", "id": "GO:0016446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016446", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "cytidine deaminase activity", "id": "GO:0004126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004126", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SLW5", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "50948", "name": "", "equation": "a 2'-deoxycytidine in single-stranded DNA + H2O + H(+) = a 2'-deoxyuridine in single-stranded DNA + NH4(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "50948", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/50948" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLW5" }, { "id": "PS51747", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51747" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CMP/dCMP-type deaminase", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 129, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SLZ5-1", "uniprot_ac": "F1SLZ5", "uniprot_id": "F1SLZ5_PIG", "mass": { "chemical_mass": 27239.0, "monoisotopic_mass": 27239.0 }, "refseq": { "ac": "XP_003126315", "name": "coenzyme Q-binding protein COQ10 homolog A, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126315" }, "gene_names": [ { "name": "COQ10A", "type": "recommended", "evidence": [ { "id": "F1SLZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5" } ] }, { "name": "COQ10A", "type": "synonym", "evidence": [ { "id": "XP_003126315", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126315" } ] } ], "protein_names": [ { "name": "Coenzyme Q10A", "type": "synonym", "evidence": [ { "id": "F1SLZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5/entry#names_and_taxonomy" } ] }, { "name": "coenzyme Q-binding protein COQ10 homolog A, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003126315", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126315" } ] } ], "function": [ { "annotation": "Required for the function of coenzyme Q in the respiratory chain. May serve as a chaperone or may be involved in the transport of Q6 from its site of synthesis to the catalytic sites of the respiratory complexes.", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ5", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5#function" }, { "database": "UniProtKB", "id": "ARBA00024947", "url": "https://www.uniprot.org/uniprotkb/ARBA00024947#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SLZ5", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COQ10A", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5", "locus": { "chromosome": "5", "start_pos": 21669045, "end_pos": 21665252, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025190", "url": "https://www.ensembl.org/id/ENSSSCG00000025190" } ] } } ], "crossref": [ { "id": "F1SLZ5", "url": "https://alphafold.ebi.ac.uk/entry/F1SLZ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025190", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025190", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07813", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07813", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152699", "url": "https://www.ncbi.nlm.nih.gov/gene/100152699", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023393", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023393", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152699", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152699", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PWCKAVY", "url": "https://omabrowser.org/oma/group/PWCKAVY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SLZ5", "url": "https://www.orthodb.org/?gene=F1SLZ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12901", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12901", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12901:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12901:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03364", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03364", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9864848", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126315", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126315", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SLZ5", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SLZ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASAGARRLPAGTRAAARGCGGFSVRPAPPPGPLRPPGPMRFLMSCSLFLPRAVQVLAAEADLSPRRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAVPRELMFHEVHQT", "length": 243, "header": "tr|F1SLZ5-1|F1SLZ5_PIG Isoform 1 of Coenzyme Q10A OS=Sus scrofa OX=9823 GN=COQ10A PE=1 SV=2 CANONICAL=F1SLZ5-1" }, "isoforms": [ { "isoform_ac": "F1SLZ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5/entry#F1SLZ5-1", "sequence": { "sequence": "MASAGARRLPAGTRAAARGCGGFSVRPAPPPGPLRPPGPMRFLMSCSLFLPRAVQVLAAEADLSPRRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVANVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAVPRELMFHEVHQT", "length": 243, "header": "tr|F1SLZ5-1|F1SLZ5_PIG Isoform 1 of Coenzyme Q10A OS=Sus scrofa OX=9823 GN=COQ10A PE=1 SV=2 CANONICAL=F1SLZ5-1" }, "locus": { "chromosome": "5", "start_pos": 21668402, "end_pos": 21665475, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023380.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023380.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024531.2", "url": "https://www.ensembl.org/id/ENSSSCP00000024531.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ5", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152699", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152699", "resource": "KEGG Pathway" }, { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-9864848", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9864848", "resource": "Reactome", "description": "Complex IV assembly" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A3A3-1", "protein_name": "Coenzyme Q10A", "gene_name": "COQ10A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQRQRWRRLWPLRLDFPDPSLLPTALDWDGWGSSSTHPVVTPSSGGLRAAPAGTQEEGLPSRAVGQPHTGSCAHTSLLCRHTAPCGLGFGRPAVSTEWDPQRAPTRSFLNLAGSLTNKRKEYSERRIIGYSMQEMYDVVSNVDDYKTFVPWCKKSVVVSKRTGHIKAQLEVGFPPVLERYTSIVTLVRPHLVKAVCTDGRLFNHLETNWRFSPGIPGYPRTCTVDFSISFEFRSLLHSQLATVFFDEVVKQMVAAFERQAAKNFGPETRIPRELMFHEVHQT", "length": 282 }, "evidence": [ { "id": "F1SLZ5", "url": "https://omabrowser.org/oma/group/F1SLZ5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E9QFB6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "coq10a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAVSGGARRIPMGVRTFSEFLEIATVGPCRSSSPYKYRERIQHWSIRHLSSCGILMTRYPRALCHSEVELTPTHHRRSFISLTNKRKEYSERRILGYSMQEMYEVVANVDDYKHFVPWCKKSQTIMKRAGHAKAQLEVGFPPVVERYTSMISHVRPHLVKAVCSDGKLFNHLETIWRFSPGIPGYPRTCTVDFSVSFEFRSLLHSQLATVFFDEVVKQMVAAFERRAGKLYGPETRIPRELMFHEVHQT", "length": 249 }, "evidence": [ { "id": "F1SLZ5", "url": "https://omabrowser.org/oma/group/F1SLZ5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q96MF6-1", "protein_name": "Coenzyme Q-binding protein COQ10 homolog A, mitochondrial", "gene_name": "COQ10A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAWAGSRRVPAGTRAAAERCCRLSLSPGAQPAPPPGPLPPPRPMRFLTSCSLLLPRAAQILAAEAGLPSSRSFMGFAAPFTNKRKAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKSLVVSSRKGHLKAQLEVGFPPVMERYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHSQLATMFFDEVVKQNVAAFERRAATKFGPETAIPRELMFHEVHQT", "length": 247 }, "evidence": [ { "id": "F1SLZ5", "url": "https://omabrowser.org/oma/group/F1SLZ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ5", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ5", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cellular respiration", "id": "GO:0045333", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045333", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ5", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquinone binding", "id": "GO:0048039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048039", "evidence": [ { "database": "UniProtKB", "id": "F1SLZ5", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SLZ5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 243, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SLZ5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SLZ5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SLZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SLZ5" }, { "id": "PF03364", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03364" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Coenzyme Q-binding protein COQ10 START", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 218, "start_aa": "Met", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM14-1", "uniprot_ac": "F1SM14", "uniprot_id": "F1SM14_PIG", "mass": { "chemical_mass": 23546.0, "monoisotopic_mass": 23546.0 }, "refseq": {}, "gene_names": [ { "name": "SPP2", "type": "recommended", "evidence": [ { "id": "F1SM14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM14" } ] } ], "protein_names": [ { "name": "Secreted phosphoprotein 24", "type": "recommended", "evidence": [ { "id": "F1SM14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM14/entry#names_and_taxonomy" } ] }, { "name": "Secreted phosphoprotein 2", "type": "synonym", "evidence": [ { "id": "F1SM14", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM14/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Could coordinate an aspect of bone turnover.", "evidence": [ { "database": "UniProtKB", "id": "F1SM14", "url": "https://www.uniprot.org/uniprotkb/F1SM14#function" }, { "database": "UniProtKB", "id": "ARBA00002371", "url": "https://www.uniprot.org/uniprotkb/ARBA00002371#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM14", "url": "https://www.uniprot.org/uniprotkb/F1SM14" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPP2", "url": "https://www.uniprot.org/uniprotkb/F1SM14", "locus": { "chromosome": "15", "start_pos": 134306862, "end_pos": 134282842, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016315", "url": "https://www.ensembl.org/id/ENSSSCG00000016315" } ] } } ], "crossref": [ { "id": "F1SM14", "url": "https://alphafold.ebi.ac.uk/entry/F1SM14", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016315", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016315", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR010892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15444", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15444", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15444:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15444:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07448", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07448", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SM14", "url": "https://www.uniprot.org/uniprotkb/F1SM14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM14-1", "url": "https://www.uniprot.org/uniprotkb/F1SM14-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VLPNMEKRAMRMLAMFVLGTSFWSCAGFPVYDYDPSSLREAVGASVAKVNSQSLSPYLFRAFRSSLKRVNVLGEDSLSMDIEFGIRETTCKRDSGGDPTTCDFQRGYFTPSAICRSTVQISAEKVQDVWVRCRWSSSSESNSSEEMIFGDILGSSTSRNNYFRGLIPDVSRTEPFYERSLETMRRFPPPGNRSFPNQWPRARTNTGFE", "length": 208, "header": "tr|F1SM14-1|F1SM14_PIG Isoform 1 of Secreted phosphoprotein 24 OS=Sus scrofa OX=9823 GN=SPP2 PE=3 SV=4 CANONICAL=F1SM14-1" }, "isoforms": [ { "isoform_ac": "F1SM14-1", "url": "https://www.uniprot.org/uniprotkb/F1SM14/entry#F1SM14-1", "sequence": { "sequence": "VLPNMEKRAMRMLAMFVLGTSFWSCAGFPVYDYDPSSLREAVGASVAKVNSQSLSPYLFRAFRSSLKRVNVLGEDSLSMDIEFGIRETTCKRDSGGDPTTCDFQRGYFTPSAICRSTVQISAEKVQDVWVRCRWSSSSESNSSEEMIFGDILGSSTSRNNYFRGLIPDVSRTEPFYERSLETMRRFPPPGNRSFPNQWPRARTNTGFE", "length": 208, "header": "tr|F1SM14-1|F1SM14_PIG Isoform 1 of Secreted phosphoprotein 24 OS=Sus scrofa OX=9823 GN=SPP2 PE=3 SV=4 CANONICAL=F1SM14-1" }, "locus": { "chromosome": "15", "start_pos": 134301755, "end_pos": 134282907, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017768.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017768.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017287.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017287.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SM14", "url": "https://www.uniprot.org/uniprotkb/F1SM14" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SM14", "url": "https://www.uniprot.org/uniprotkb/F1SM14" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "bone remodeling", "id": "GO:0046849", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046849", "evidence": [ { "database": "UniProtKB", "id": "F1SM14", "url": "https://www.uniprot.org/uniprotkb/F1SM14" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SM14-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 208, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SM14-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SM14" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 191, "end_pos": 193 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM19-1", "uniprot_ac": "F1SM19", "uniprot_id": "F1SM19_PIG", "mass": { "chemical_mass": 26684.0, "monoisotopic_mass": 26684.0 }, "refseq": { "ac": "XP_020930379", "name": "dnaJ homolog subfamily B member 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930379" }, "gene_names": [ { "name": "DNAJB3", "type": "recommended", "evidence": [ { "id": "F1SM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ] }, { "name": "DNAJB3", "type": "synonym", "evidence": [ { "id": "XP_020930379", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930379" } ] } ], "protein_names": [ { "name": "DnaJ heat shock protein family (Hsp40) member B3", "type": "synonym", "evidence": [ { "id": "F1SM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM19/entry#names_and_taxonomy" } ] }, { "name": "dnaJ homolog subfamily B member 3", "type": "synonym", "evidence": [ { "id": "XP_020930379", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930379" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNAJB3", "url": "https://www.uniprot.org/uniprotkb/F1SM19", "locus": {} } ], "crossref": [ { "id": "F1SM19", "url": "https://alphafold.ebi.ac.uk/entry/F1SM19", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028217", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028217", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100739088", "url": "https://www.ncbi.nlm.nih.gov/gene/100739088", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043183", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043183", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739088", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739088", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DKNPEHK", "url": "https://omabrowser.org/oma/group/DKNPEHK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45168", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45168", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45168:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45168:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020930379", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930379", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM19-1", "url": "https://www.uniprot.org/uniprotkb/F1SM19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDYYEVLGVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAQAYEVLSDAKKRDVYDRCGAAGVEGRGGGRPFERPSEGVFSFRDPAEVFREFFGGWDPFSFDFFPDPLENIMGGRRSSRVSRNRGSAPLFSTFSEFPAFRGGVSSFDTGFTSFASLGNGGLSSFSMSCGGGGGGRGTFKSVSTSTEIINGKKITTKRIIENGRERVEVDEDGELKSLIINGKEELLRIDPR", "length": 241, "header": "tr|F1SM19-1|F1SM19_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member B3 OS=Sus scrofa OX=9823 GN=DNAJB3 PE=4 SV=3 CANONICAL=F1SM19-1" }, "isoforms": [ { "isoform_ac": "F1SM19-1", "url": "https://www.uniprot.org/uniprotkb/F1SM19/entry#F1SM19-1", "sequence": { "sequence": "MVDYYEVLGVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAQAYEVLSDAKKRDVYDRCGAAGVEGRGGGRPFERPSEGVFSFRDPAEVFREFFGGWDPFSFDFFPDPLENIMGGRRSSRVSRNRGSAPLFSTFSEFPAFRGGVSSFDTGFTSFASLGNGGLSSFSMSCGGGGGGRGTFKSVSTSTEIINGKKITTKRIIENGRERVEVDEDGELKSLIINGKEELLRIDPR", "length": 241, "header": "tr|F1SM19-1|F1SM19_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member B3 OS=Sus scrofa OX=9823 GN=DNAJB3 PE=4 SV=3 CANONICAL=F1SM19-1" }, "locus": { "chromosome": "15", "start_pos": 134028075, "end_pos": 134027353, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023492.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023492.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019948.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019948.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739088", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739088", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZAC5-1", "protein_name": "DnaJ heat shock protein family (Hsp40) member B3", "gene_name": "Dnajb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDYYEVLGVPRQASAEAIRKAYRKLALKWHPDKNPEHKEEAERRFKQVAQAYEVLSDARKREVYDRCGEVGEVGGGGAAGSPFHDAFQYVFSFRDPAEVFREFFGGHDPFSFDFFGDPLENFFGDRRSTRGSRSRGSVPFSTSFTEFPGFGGGFASLDTGFTSFGSPGNSGLSSFSMSCGGGAAGNYKSVSTSTEIINGKKITTKRIVENGQERVEVEEDGELKSLIINGKEQLLRIDTQ", "length": 241 }, "evidence": [ { "id": "F1SM19", "url": "https://omabrowser.org/oma/group/F1SM19/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3IET8-1", "protein_name": "DnaJ homolog subfamily B member 3", "gene_name": "Dnajb3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVDYYEVLGVPRQASAEAIRKAYRKLALKWHPDKNPEHKEEAERRFKQVAQAYEVLSDARKREVYDRCGEAGEVGGGGAAGSPFQDAFQYVFSFRDPAEVFREFFGGRDPFSFDFFGDPFENFFGDRRSSRGSRCRGAVPFSASFTDFPTFGGGFASLDTGFTSFASPGSPSLSSFSMSCGGGAAGNFKSVSTSTEIVNGKKITTKRIVENGHERVEVEEDGQLKSLIINGKEQLLRIDTQ", "length": 241 }, "evidence": [ { "id": "F1SM19", "url": "https://omabrowser.org/oma/group/F1SM19/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ], "pmid": "" }, { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ], "pmid": "" }, { "name": "Hsp70 protein binding", "id": "GO:0030544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030544", "evidence": [ { "database": "UniProtKB", "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ], "pmid": "" }, { "name": "protein folding chaperone", "id": "GO:0044183", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044183", "evidence": [ { "database": "UniProtKB", "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F1SM19", "url": "https://www.uniprot.org/uniprotkb/F1SM19" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SM19-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 241, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SM19-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SM19" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SM19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM19" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 69, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM33-1", "uniprot_ac": "F1SM33", "uniprot_id": "F1SM33_PIG", "mass": { "chemical_mass": 14643.0, "monoisotopic_mass": 14643.0 }, "refseq": { "ac": "XP_003121764", "name": "organic solute transporter subunit beta", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121764" }, "gene_names": [ { "name": "SLC51B", "type": "recommended", "evidence": [ { "id": "F1SM33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM33" } ] }, { "name": "SLC51B", "type": "synonym", "evidence": [ { "id": "XP_003121764", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121764" } ] } ], "protein_names": [ { "name": "SLC51 subunit beta", "type": "synonym", "evidence": [ { "id": "F1SM33", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM33/entry#names_and_taxonomy" } ] }, { "name": "organic solute transporter subunit beta", "type": "synonym", "evidence": [ { "id": "XP_003121764", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121764" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM33", "url": "https://www.uniprot.org/uniprotkb/F1SM33" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC51B", "url": "https://www.uniprot.org/uniprotkb/F1SM33", "locus": { "chromosome": "1", "start_pos": 163089488, "end_pos": 163081180, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004923", "url": "https://www.ensembl.org/id/ENSSSCG00000004923" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004923", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004923", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525144", "url": "https://www.ncbi.nlm.nih.gov/gene/100525144", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052678", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052678", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525144", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525144", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EMLWVFR", "url": "https://omabrowser.org/oma/group/EMLWVFR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SM33", "url": "https://www.orthodb.org/?gene=F1SM33", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36129:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36129:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15048", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15048", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-159418", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159418", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003121764", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121764", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SM33", "url": "https://www.uniprot.org/uniprotkb/F1SM33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM33-1", "url": "https://www.uniprot.org/uniprotkb/F1SM33-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFSEDVTGAPPGTLVPQELLEEMLWFYRVEDATPWNASMLALVAVVVVISFVLLGRSIQANRNPKTLPSEKQHPEALYLAEVGAKENDNLTILRETLLSEKPNLAQVEMELKDRDVPHGFLLADPRESES", "length": 131, "header": "tr|F1SM33-1|F1SM33_PIG Isoform 1 of SLC51 subunit beta OS=Sus scrofa OX=9823 GN=SLC51B PE=1 SV=3 CANONICAL=F1SM33-1" }, "isoforms": [ { "isoform_ac": "F1SM33-1", "url": "https://www.uniprot.org/uniprotkb/F1SM33/entry#F1SM33-1", "sequence": { "sequence": "MDFSEDVTGAPPGTLVPQELLEEMLWFYRVEDATPWNASMLALVAVVVVISFVLLGRSIQANRNPKTLPSEKQHPEALYLAEVGAKENDNLTILRETLLSEKPNLAQVEMELKDRDVPHGFLLADPRESES", "length": 131, "header": "tr|F1SM33-1|F1SM33_PIG Isoform 1 of SLC51 subunit beta OS=Sus scrofa OX=9823 GN=SLC51B PE=1 SV=3 CANONICAL=F1SM33-1" }, "locus": { "chromosome": "1", "start_pos": 163089363, "end_pos": 163085424, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005433.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005433.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005298.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005298.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SM33", "url": "https://www.uniprot.org/uniprotkb/F1SM33" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525144", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525144", "resource": "KEGG Pathway" }, { "id": "R-SSC-159418", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159418", "resource": "Reactome", "description": "Recycling of bile acids and salts" } ], "orthologs": [ { "uniprot_canonical_ac": "A0JNM1-1", "protein_name": "Organic solute transporter subunit beta", "gene_name": "SLC51B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNYSEKLTGAPPMTEVPLELLEEMLWFFRVEDATPWNCSMFVLAALVAIISFILLGRNIQANRNQKKLPPEKQTPEVLYLAEGGNKDDKNLTSLTETLLSEKPTLAQGEMEAKCSDVPRVHLPDPQEPES", "length": 130 }, "evidence": [ { "id": "F1SM33", "url": "https://omabrowser.org/oma/group/F1SM33/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZYJ2-1", "protein_name": "SLC51 subunit beta", "gene_name": "Slc51b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDHSAEGAAASAEVPQELLEEMLWYFRSEDATPWNYSILVLAVLVMVIGVVLLRRSILANRNRKKQPQDNGMPEDLHLDDSMKENSSLGILRETLISEKADLAPGETELNKRETSVVFLPDPQETES", "length": 127 }, "evidence": [ { "id": "F1SM33", "url": "https://omabrowser.org/oma/group/F1SM33/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HUZ1-1", "protein_name": "Organic solute transporter subunit beta", "gene_name": "Slc51b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDHSVEGAAVSPEVPQELLEEMIWVFRAEDAAPWNYSILVLAVLVAVISLFLLRRSILANRNRKKQPQDKETPEALHLDDYRMKENSSLSNLRETLISEKPDLPPGDTELNEKDARRVFLPDPQETES", "length": 128 }, "evidence": [ { "id": "F1SM33", "url": "https://omabrowser.org/oma/group/F1SM33/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q80WK2-1", "protein_name": "Organic solute transporter subunit beta", "gene_name": "Slc51b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDHSAEKAAANAEVPQELLEEMLWYFRAEDAAPWNYSILVLAVLVVMTSMFLLRRSILANRNRKKQPQDKETPEDLHLDDSIMKENNSQVFLRETLISEKPDLAPGEPELKEKDSSLVFLPDPQETES", "length": 128 }, "evidence": [ { "id": "F1SM33", "url": "https://omabrowser.org/oma/group/F1SM33/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86UW2-1", "protein_name": "Organic solute transporter subunit beta", "gene_name": "SLC51B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEHSEGAPGDPAGTVVPQELLEEMLWFFRVEDASPWNHSILALAAVVVIISMVLLGRSIQASRKEKMQPPEKETPEVLHLDEAKDHNSLNNLRETLLSEKPNLAQVELELKERDVLSVFLPDVPETES", "length": 128 }, "evidence": [ { "id": "F1SM33", "url": "https://omabrowser.org/oma/group/F1SM33/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SM33", "url": "https://www.uniprot.org/uniprotkb/F1SM33" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SM33", "url": "https://www.uniprot.org/uniprotkb/F1SM33" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F1SM33", "url": "https://www.uniprot.org/uniprotkb/F1SM33" } ], "pmid": "" }, { "name": "bile acid transmembrane transporter activity", "id": "GO:0015125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015125", "evidence": [ { "database": "UniProtKB", "id": "F1SM33", "url": "https://www.uniprot.org/uniprotkb/F1SM33" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "bile acid and bile salt transport", "id": "GO:0015721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015721", "evidence": [ { "database": "UniProtKB", "id": "F1SM33", "url": "https://www.uniprot.org/uniprotkb/F1SM33" } ], "pmid": "" }, { "name": "bile acid secretion", "id": "GO:0032782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032782", "evidence": [ { "database": "UniProtKB", "id": "F1SM33", "url": "https://www.uniprot.org/uniprotkb/F1SM33" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 90, "end_pos": 92, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 37, "end_pos": 39 }, { "start_pos": 90, "end_pos": 92 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM49-1", "uniprot_ac": "F1SM49", "uniprot_id": "F1SM49_PIG", "mass": { "chemical_mass": 12084.0, "monoisotopic_mass": 12084.0 }, "refseq": { "ac": "NP_001172114", "name": "protein SNORC precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172114" }, "gene_names": [ { "name": "SNORC", "type": "recommended", "evidence": [ { "id": "F1SM49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM49" } ] }, { "name": "C15H2orf82", "type": "synonym", "evidence": [ { "id": "NP_001172114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172114" } ] }, { "name": "C2orf82", "type": "synonym", "evidence": [ { "id": "NP_001172114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172114" } ] }, { "name": "SNORC", "type": "synonym", "evidence": [ { "id": "NP_001172114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172114" } ] } ], "protein_names": [ { "name": "Secondary ossification center associated regulator of chondrocyte maturation", "type": "synonym", "evidence": [ { "id": "F1SM49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM49/entry#names_and_taxonomy" } ] }, { "name": "chromosome 15 C2orf82 homolog", "type": "synonym", "evidence": [ { "id": "NP_001172114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172114" } ] }, { "name": "protein SNORC precursor", "type": "synonym", "evidence": [ { "id": "NP_001172114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172114" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM49", "url": "https://www.uniprot.org/uniprotkb/F1SM49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SNORC", "url": "https://www.uniprot.org/uniprotkb/F1SM49", "locus": { "chromosome": "15", "start_pos": 133330253, "end_pos": 133323562, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016294", "url": "https://www.ensembl.org/id/ENSSSCG00000016294" } ] } } ], "crossref": [ { "id": "F1SM49", "url": "https://alphafold.ebi.ac.uk/entry/F1SM49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016294", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016294", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157430", "url": "https://www.ncbi.nlm.nih.gov/gene/100157430", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157430", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157430", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WNEPIEL", "url": "https://omabrowser.org/oma/group/WNEPIEL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR28453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28453:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28453:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15756", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15756", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001172114", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172114", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SM49", "url": "https://www.uniprot.org/uniprotkb/F1SM49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM49-1", "url": "https://www.uniprot.org/uniprotkb/F1SM49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFRLALRVALLLLSGVLAPAVLTAEGPQEPEPTLWNEPAELPSGEGPAESTSPAREPAATAPPAPTAAPSPEDSTARERLDQGGGSLGPGAIAAIVIAALLATCVVLALVVVALRKFSAS", "length": 121, "header": "tr|F1SM49-1|F1SM49_PIG Isoform 1 of Secondary ossification center associated regulator of chondrocyte maturation OS=Sus scrofa OX=9823 GN=SNORC PE=4 SV=1 CANONICAL=F1SM49-1" }, "isoforms": [ { "isoform_ac": "F1SM49-1", "url": "https://www.uniprot.org/uniprotkb/F1SM49/entry#F1SM49-1", "sequence": { "sequence": "MAFRLALRVALLLLSGVLAPAVLTAEGPQEPEPTLWNEPAELPSGEGPAESTSPAREPAATAPPAPTAAPSPEDSTARERLDQGGGSLGPGAIAAIVIAALLATCVVLALVVVALRKFSAS", "length": 121, "header": "tr|F1SM49-1|F1SM49_PIG Isoform 1 of Secondary ossification center associated regulator of chondrocyte maturation OS=Sus scrofa OX=9823 GN=SNORC PE=4 SV=1 CANONICAL=F1SM49-1" }, "locus": { "chromosome": "15", "start_pos": 133330181, "end_pos": 133323640, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017743.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017743.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017262.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017262.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 67, "start_aa": "Thr", "end_pos": 67, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr67", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SM49", "url": "https://www.uniprot.org/uniprotkb/F1SM49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157430", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157430", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PCM9-1", "protein_name": "Secondary ossification center associated regulator of chondrocyte maturation", "gene_name": "SNORC", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPCHRALRPLLLTLCFLLPAALAAEYPRGPLPTLWNEPAELPSGSGPFDAATTTARLSDGTAFAPYTSELEPEDTTHLHRLDAGDGSLGPGAIGAIVIASLLGTSVLVALVVITLRKFSAS", "length": 121 }, "evidence": [ { "id": "F1SM49", "url": "https://omabrowser.org/oma/group/F1SM49/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6UX34-1", "protein_name": "Protein SNORC", "gene_name": "SNORC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASCLALRMALLLVSGVLAPAVLTDDVPQEPVPTLWNEPAELPSGEGPVESTSPGREPVDTGPPAPTVAPGPEDSTAQERLDQGGGSLGPGAIAAIVIAALLATCVVLALVVVALRKFSAS", "length": 121 }, "evidence": [ { "id": "F1SM49", "url": "https://omabrowser.org/oma/group/F1SM49/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CXL7-1", "protein_name": "Protein SNORC", "gene_name": "Snorc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASCLALRVALLLISGVLAPAVLTAEGPQEPDPTLWNEPIELPSGEGPLESTSHNQEFAVSGPPFPTSAPAPEDSTPPARVDQDGGSLGPGAIAAIVIAALLATCVVLALVVVALRKFSAS", "length": 121 }, "evidence": [ { "id": "F1SM49", "url": "https://omabrowser.org/oma/group/F1SM49/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cell periphery", "id": "GO:0071944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071944", "evidence": [ { "database": "UniProtKB", "id": "F1SM49", "url": "https://www.uniprot.org/uniprotkb/F1SM49" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cartilage development", "id": "GO:0051216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051216", "evidence": [ { "database": "UniProtKB", "id": "F1SM49", "url": "https://www.uniprot.org/uniprotkb/F1SM49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SM49-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 121, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SM49-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SM49" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 67 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM66-1", "uniprot_ac": "F1SM66", "uniprot_id": "F1SM66_PIG", "mass": { "chemical_mass": 23975.0, "monoisotopic_mass": 23975.0 }, "refseq": { "ac": "XP_005674520", "name": "putative claudin-25", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005674520" }, "gene_names": [ { "name": "CLDN25", "type": "recommended", "evidence": [ { "id": "F1SM66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM66" } ] }, { "name": "CLDN25", "type": "synonym", "evidence": [ { "id": "XP_005674520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005674520" } ] } ], "protein_names": [ { "name": "Claudin 25", "type": "synonym", "evidence": [ { "id": "F1SM66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM66/entry#names_and_taxonomy" } ] }, { "name": "putative claudin-25", "type": "synonym", "evidence": [ { "id": "XP_005674520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005674520" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM66", "url": "https://www.uniprot.org/uniprotkb/F1SM66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CLDN25", "url": "https://www.uniprot.org/uniprotkb/F1SM66", "locus": { "chromosome": "9", "start_pos": 41408995, "end_pos": 41407272, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015051", "url": "https://www.ensembl.org/id/ENSSSCG00000015051" } ] } } ], "crossref": [ { "id": "F1SM66", "url": "https://alphafold.ebi.ac.uk/entry/F1SM66", "database": "AlphaFoldDB", "categories": [] }, { "id": "100519437", "url": "https://www.ncbi.nlm.nih.gov/gene/100519437", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519437", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519437", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SM66", "url": "https://www.orthodb.org/?gene=F1SM66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005674520", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005674520", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SM66", "url": "https://www.uniprot.org/uniprotkb/F1SM66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM66-1", "url": "https://www.uniprot.org/uniprotkb/F1SM66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWSSHGKAQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWVTGLWEVCVDQEEVATVCKAFDSFLALPQELRASRVLMVTSHGLGLFGLLLSGFGAECFQCYRFRWIFKRRLCLLGGTLEVSASATTLLPVSWVAYSTIQDFWDDRIPEIVPRWELGDALYLGWAAGVFLALGGLLFIFSACLGKDVPSPRRAVPTTAPPSCATAEESDSSF", "length": 218, "header": "tr|F1SM66-1|F1SM66_PIG Isoform 1 of Claudin 25 OS=Sus scrofa OX=9823 GN=CLDN25 PE=3 SV=4 CANONICAL=F1SM66-1" }, "isoforms": [ { "isoform_ac": "F1SM66-1", "url": "https://www.uniprot.org/uniprotkb/F1SM66/entry#F1SM66-1", "sequence": { "sequence": "MAWSSHGKAQLGGLLLSLLGWVCSCVTTILPQWKTLNLELNEMETWVTGLWEVCVDQEEVATVCKAFDSFLALPQELRASRVLMVTSHGLGLFGLLLSGFGAECFQCYRFRWIFKRRLCLLGGTLEVSASATTLLPVSWVAYSTIQDFWDDRIPEIVPRWELGDALYLGWAAGVFLALGGLLFIFSACLGKDVPSPRRAVPTTAPPSCATAEESDSSF", "length": 218, "header": "tr|F1SM66-1|F1SM66_PIG Isoform 1 of Claudin 25 OS=Sus scrofa OX=9823 GN=CLDN25 PE=3 SV=4 CANONICAL=F1SM66-1" }, "locus": { "chromosome": "9", "start_pos": 41407953, "end_pos": 41407300, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016417.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016417.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015976.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015976.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SM66", "url": "https://www.uniprot.org/uniprotkb/F1SM66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519437", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519437", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SM66", "url": "https://www.uniprot.org/uniprotkb/F1SM66" } ], "pmid": "" }, { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "F1SM66", "url": "https://www.uniprot.org/uniprotkb/F1SM66" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "F1SM66", "url": "https://www.uniprot.org/uniprotkb/F1SM66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SM66-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 218, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SM66-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SM66" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SM78-1", "uniprot_ac": "F1SM78", "uniprot_id": "F1SM78_PIG", "mass": { "chemical_mass": 19779.0, "monoisotopic_mass": 19779.0 }, "refseq": {}, "gene_names": [ { "name": "MYL12B", "type": "recommended", "evidence": [ { "id": "F1SM78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ] } ], "protein_names": [ { "name": "Myosin light chain 12B", "type": "synonym", "evidence": [ { "id": "F1SM78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM78/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYL12B", "url": "https://www.uniprot.org/uniprotkb/F1SM78", "locus": { "chromosome": "6", "start_pos": 103388504, "end_pos": 103397740, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000058470", "url": "https://www.ensembl.org/id/ENSSSCG00000058470" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003691", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003691", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:414399", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:414399", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SM78", "url": "https://www.orthodb.org/?gene=F1SM78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23049", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23049", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08976", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08976", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SM78-1", "url": "https://www.uniprot.org/uniprotkb/F1SM78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD", "length": 172, "header": "tr|F1SM78-1|F1SM78_PIG Isoform 1 of Myosin light chain 12B OS=Sus scrofa OX=9823 GN=MYL12B PE=4 SV=2 CANONICAL=F1SM78-1" }, "isoforms": [ { "isoform_ac": "F1SM78-1", "url": "https://www.uniprot.org/uniprotkb/F1SM78/entry#F1SM78-1", "sequence": { "sequence": "MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD", "length": 172, "header": "tr|F1SM78-1|F1SM78_PIG Isoform 1 of Myosin light chain 12B OS=Sus scrofa OX=9823 GN=MYL12B PE=4 SV=2 CANONICAL=F1SM78-1" }, "locus": { "chromosome": "6", "start_pos": 103397725, "end_pos": 103391756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056421.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056421.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054500.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054500.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:414399", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:414399", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "brush border", "id": "GO:0005903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005903", "evidence": [ { "database": "UniProtKB", "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ], "pmid": "" }, { "name": "stress fiber", "id": "GO:0001725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001725", "evidence": [ { "database": "UniProtKB", "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ], "pmid": "" }, { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ], "pmid": "" }, { "name": "myosin II complex", "id": "GO:0016460", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016460", "evidence": [ { "database": "UniProtKB", "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ], "pmid": "" }, { "name": "myosin heavy chain binding", "id": "GO:0032036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032036", "evidence": [ { "database": "UniProtKB", "id": "F1SM78", "url": "https://www.uniprot.org/uniprotkb/F1SM78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" }, { "start_pos": 95, "end_pos": 97, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SM78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SM78" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 64, "start_aa": "Ser", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 82, "end_pos": 84 }, { "start_pos": 95, "end_pos": 97 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMA9-1", "uniprot_ac": "F1SMA9", "uniprot_id": "F1SMA9_PIG", "mass": { "chemical_mass": 18388.0, "monoisotopic_mass": 18388.0 }, "refseq": {}, "gene_names": [ { "name": "SDHD", "type": "recommended", "evidence": [ { "id": "F1SMA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ] } ], "protein_names": [ { "name": "Succinate dehydrogenase [ubiquinone] cytochrome b small subunit", "type": "recommended", "evidence": [ { "id": "F1SMA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMA9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Membrane-anchoring subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). SDH also oxidizes malate to the non-canonical enol form of oxaloacetate, enol-oxaloacetate. Enol-oxaloacetate, which is a potent inhibitor of the succinate dehydrogenase activity, is further isomerized into keto-oxaloacetate.", "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9#function" }, { "database": "UniProtKB", "id": "ARBA00045847", "url": "https://www.uniprot.org/uniprotkb/ARBA00045847#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SDHD", "url": "https://www.uniprot.org/uniprotkb/F1SMA9", "locus": { "chromosome": "9", "start_pos": 39803950, "end_pos": 39790595, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015034", "url": "https://www.ensembl.org/id/ENSSSCG00000015034" } ] } } ], "crossref": [ { "id": "F1SMA9", "url": "https://alphafold.ebi.ac.uk/entry/F1SMA9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015034", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015034", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03496", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03496", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR007992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13337", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13337", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13337:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13337:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05328", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05328", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-71403", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-71403", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9854311", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9854311", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMA9-1", "url": "https://www.uniprot.org/uniprotkb/F1SMA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLSLQERHGDSLEAQCSLRCPRRRSSGPPDLSGQTCSCLSISPGPTTPGWCGVQHIHLSPSHQASSKAASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDALQKAAKAGLLALSAFTFAGLCYFNYHDVGSAKLLPCCGSSELLELIP", "length": 174, "header": "tr|F1SMA9-1|F1SMA9_PIG Isoform 1 of Succinate dehydrogenase [ubiquinone] cytochrome b small subunit OS=Sus scrofa OX=9823 GN=SDHD PE=3 SV=4 CANONICAL=F1SMA9-1" }, "isoforms": [ { "isoform_ac": "F1SMA9-1", "url": "https://www.uniprot.org/uniprotkb/F1SMA9/entry#F1SMA9-1", "sequence": { "sequence": "MTLSLQERHGDSLEAQCSLRCPRRRSSGPPDLSGQTCSCLSISPGPTTPGWCGVQHIHLSPSHQASSKAASLHWTGERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGIGQVVTDYVRGDALQKAAKAGLLALSAFTFAGLCYFNYHDVGSAKLLPCCGSSELLELIP", "length": 174, "header": "tr|F1SMA9-1|F1SMA9_PIG Isoform 1 of Succinate dehydrogenase [ubiquinone] cytochrome b small subunit OS=Sus scrofa OX=9823 GN=SDHD PE=3 SV=4 CANONICAL=F1SMA9-1" }, "locus": { "chromosome": "9", "start_pos": 39803162, "end_pos": 39790629, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016399.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016399.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015958.5", "url": "https://www.ensembl.org/id/ENSSSCP00000015958.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 47, "start_aa": "Thr", "end_pos": 47, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr47", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-71403", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-71403", "resource": "Reactome", "description": "Citric acid cycle (TCA cycle)" }, { "id": "R-SSC-9854311", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9854311", "resource": "Reactome", "description": "Maturation of TCA enzymes and regulation of TCA cycle" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ], "pmid": "" }, { "name": "respiratory chain complex II (succinate dehydrogenase)", "id": "GO:0045273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045273", "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "tricarboxylic acid cycle", "id": "GO:0006099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006099", "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ], "pmid": "" }, { "name": "mitochondrial electron transport, succinate to ubiquinone", "id": "GO:0006121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006121", "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ], "pmid": "" }, { "name": "heme binding", "id": "GO:0020037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0020037", "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ], "pmid": "" }, { "name": "ubiquinone binding", "id": "GO:0048039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048039", "evidence": [ { "database": "UniProtKB", "id": "F1SMA9", "url": "https://www.uniprot.org/uniprotkb/F1SMA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMA9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 174, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMA9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMA9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 47 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMB8-1", "uniprot_ac": "F1SMB8", "uniprot_id": "F1SMB8_PIG", "mass": { "chemical_mass": 202846.0, "monoisotopic_mass": 202846.0 }, "refseq": {}, "gene_names": [ { "name": "CEP192", "type": "recommended", "evidence": [ { "id": "F1SMB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ] } ], "protein_names": [ { "name": "Centrosomal protein 192", "type": "synonym", "evidence": [ { "id": "F1SMB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMB8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CEP192", "url": "https://www.uniprot.org/uniprotkb/F1SMB8", "locus": { "chromosome": "6", "start_pos": 96611564, "end_pos": 96667705, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000059665", "url": "https://www.ensembl.org/id/ENSSSCG00000059665" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003673", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003673", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054089", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054089", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054090", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054090", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054092", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054092", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16029", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16029", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16029:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16029:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF22060", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22060", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22064", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22064", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22065", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22065", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22066", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22066", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22067", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22067", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22073", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22073", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22074", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22074", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2565942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380259", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380284", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMB8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMB8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVHLNHSLFAGDLKAQLSEGSVTLEAEELENISQVDENDVTLTASKRKTEDTFTSDSKPQRGRSELPRAGDSVLRISTIASAIADASVSADPSQLAAMIKALSNKTREKALHEDGKQELSPTVSHFLPHDLEKSNGSSTFDMEKYLQKTEISRCEGGPGDLSRAGVSDIWDLSLSKEQTTRDIHAVDMGTASISVREPQGLAAAFYGENGASSNQASLRTVNSSNSVLTNMRGGAGVDVKTHSVEHKAPDAGDGGDTALAPALGSDGFASVRNARVASLWLSEECEVRQKSRGCQRQSEHASEMSNSEKHVTFENHSVTSPKSIDVKNSSPEHGGLGSEDDQDSFRPSTSPLSHSSPSEISGTSLSGCALESSGSAACPQVPPGERESSQLMCPQSSVSRLTYVSERDSSWPTTASDRGLEDRKSDITTELSTTIIQASPLPSQEPAVDRFREERPFQSRAKGALVYITQKSLGPEHVTETTSLNSRPERGKPRLRSSSELCSRSEDLSEASVLGVPSGPREEDRLSPALLSHPGLQPPAALRLPASRQAPVGAAGRGTPEDVSGGQGCHQMASAGGSAPETQPVAPTLTTQHPPPAPMPFAQPYPGTLPQSTMVCGCSGGCHPAITGEHIRSVAPMGICLGQSVGSGWMGAVSLCDLYPSAVSQSLLSTAKPFPAQAAATSCGIESWDSGAVTGFGTVSVPEELKFPHACCVGIASQTYLSVLNPTDRWLQVSVGVLSVSVNGEKVDLSAYPCLVFKNKVIVRPHATEDIKVLFIPSDPGIFRCIFSVASWPFSADAETVVQAEALASRVVLTAIAETPMIEVETEKKDVLDFGDLTYGSWKALPLKLINRTHATIPVRLIINANAMAWRCFAFSKEPIHPALKVLPYADVVAQLTAPSVINHMMPASSDGQDPEFLIIWVLFRSPKKQITSSEILDSAEEFLARVDIEVDSPNPTPIIKSISLRARAGVARIHAPKDLQTMHLLATVASSTRQYLPLKNAGNIDVCLDIKIPGQGSRLSVDPEKLFLKPGEEHEVAVSFTPEDPGACEERILKIFVQPFGPQYEVLLKGEVISSGNQSLTPGSCCSDIPPILSNKQFLAWGGIPLGRTQLQKLALRNNSISTTQLLRLLIRGQDQDCFQLQHTFGSEERLTSNCEIRIRPKEDICISVLFAPTRLSCMLAKLEIKQLGIRSQPGVKFTIPLSGYGGTSNLILDNVKKLSDSYMVTMNDLVPGKESRIVFSVRNTGSRAAFVKAVGFKDSQKKILLDSKVLKIVPDTFVLKERTQEDVTIIYNPSDSESNYKTTQLSTIYFFGGDEISRQQFRRAVLQDPGLVRQALPAHSVLQNINFAVAFQDELQVAEVYDLPQRPNDVQLFYGNMRKIILSVIGEFRTSTPNRDHHSPASRASSEPSSDPGSCGKHGGNVSLDVLPVKGPQGSPLLSQAIHPPQDRSVSEEVWAVQPEHLVLVAPSYDMGKTGRFQIINHSVRLLRFELYWPAHCLTVTPQHGFIAPESKLQILVSPNSSLSAKHAMFPWSGLIYIHCDNGQKKIVKVQIREDLTQEELFIRLTSSAPGVLSLGPEPSVSHLVKPLRKPPSTRVEIRNKTIIFPTTEPGETSGNHLELENHGDTQVRWYLSSLAPPYVKGVDESGDVFRATYAVFRCSPISGVLESHGVQRVSITFLPRDKGEYAQFWDVECHPLKEPHLKHTLRFQLSGQSVKAGLEPENARMSTNGLIKLDNVMKSQRRAESEASVPIPSRQLDLIHRGVYAPQDVYQFLPTRVGESRTLKVNLRNNSFITHSLKFLSPREPFYVKHSKYSLRAQHYINMPVQFKPRSTGRFEALLVVQTDEGKSVAVRLMGEALEKS", "length": 1864, "header": "tr|F1SMB8-1|F1SMB8_PIG Isoform 1 of Centrosomal protein 192 OS=Sus scrofa OX=9823 GN=CEP192 PE=4 SV=4 CANONICAL=F1SMB8-1" }, "isoforms": [ { "isoform_ac": "F1SMB8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMB8/entry#F1SMB8-1", "sequence": { "sequence": "MVHLNHSLFAGDLKAQLSEGSVTLEAEELENISQVDENDVTLTASKRKTEDTFTSDSKPQRGRSELPRAGDSVLRISTIASAIADASVSADPSQLAAMIKALSNKTREKALHEDGKQELSPTVSHFLPHDLEKSNGSSTFDMEKYLQKTEISRCEGGPGDLSRAGVSDIWDLSLSKEQTTRDIHAVDMGTASISVREPQGLAAAFYGENGASSNQASLRTVNSSNSVLTNMRGGAGVDVKTHSVEHKAPDAGDGGDTALAPALGSDGFASVRNARVASLWLSEECEVRQKSRGCQRQSEHASEMSNSEKHVTFENHSVTSPKSIDVKNSSPEHGGLGSEDDQDSFRPSTSPLSHSSPSEISGTSLSGCALESSGSAACPQVPPGERESSQLMCPQSSVSRLTYVSERDSSWPTTASDRGLEDRKSDITTELSTTIIQASPLPSQEPAVDRFREERPFQSRAKGALVYITQKSLGPEHVTETTSLNSRPERGKPRLRSSSELCSRSEDLSEASVLGVPSGPREEDRLSPALLSHPGLQPPAALRLPASRQAPVGAAGRGTPEDVSGGQGCHQMASAGGSAPETQPVAPTLTTQHPPPAPMPFAQPYPGTLPQSTMVCGCSGGCHPAITGEHIRSVAPMGICLGQSVGSGWMGAVSLCDLYPSAVSQSLLSTAKPFPAQAAATSCGIESWDSGAVTGFGTVSVPEELKFPHACCVGIASQTYLSVLNPTDRWLQVSVGVLSVSVNGEKVDLSAYPCLVFKNKVIVRPHATEDIKVLFIPSDPGIFRCIFSVASWPFSADAETVVQAEALASRVVLTAIAETPMIEVETEKKDVLDFGDLTYGSWKALPLKLINRTHATIPVRLIINANAMAWRCFAFSKEPIHPALKVLPYADVVAQLTAPSVINHMMPASSDGQDPEFLIIWVLFRSPKKQITSSEILDSAEEFLARVDIEVDSPNPTPIIKSISLRARAGVARIHAPKDLQTMHLLATVASSTRQYLPLKNAGNIDVCLDIKIPGQGSRLSVDPEKLFLKPGEEHEVAVSFTPEDPGACEERILKIFVQPFGPQYEVLLKGEVISSGNQSLTPGSCCSDIPPILSNKQFLAWGGIPLGRTQLQKLALRNNSISTTQLLRLLIRGQDQDCFQLQHTFGSEERLTSNCEIRIRPKEDICISVLFAPTRLSCMLAKLEIKQLGIRSQPGVKFTIPLSGYGGTSNLILDNVKKLSDSYMVTMNDLVPGKESRIVFSVRNTGSRAAFVKAVGFKDSQKKILLDSKVLKIVPDTFVLKERTQEDVTIIYNPSDSESNYKTTQLSTIYFFGGDEISRQQFRRAVLQDPGLVRQALPAHSVLQNINFAVAFQDELQVAEVYDLPQRPNDVQLFYGNMRKIILSVIGEFRTSTPNRDHHSPASRASSEPSSDPGSCGKHGGNVSLDVLPVKGPQGSPLLSQAIHPPQDRSVSEEVWAVQPEHLVLVAPSYDMGKTGRFQIINHSVRLLRFELYWPAHCLTVTPQHGFIAPESKLQILVSPNSSLSAKHAMFPWSGLIYIHCDNGQKKIVKVQIREDLTQEELFIRLTSSAPGVLSLGPEPSVSHLVKPLRKPPSTRVEIRNKTIIFPTTEPGETSGNHLELENHGDTQVRWYLSSLAPPYVKGVDESGDVFRATYAVFRCSPISGVLESHGVQRVSITFLPRDKGEYAQFWDVECHPLKEPHLKHTLRFQLSGQSVKAGLEPENARMSTNGLIKLDNVMKSQRRAESEASVPIPSRQLDLIHRGVYAPQDVYQFLPTRVGESRTLKVNLRNNSFITHSLKFLSPREPFYVKHSKYSLRAQHYINMPVQFKPRSTGRFEALLVVQTDEGKSVAVRLMGEALEKS", "length": 1864, "header": "tr|F1SMB8-1|F1SMB8_PIG Isoform 1 of Centrosomal protein 192 OS=Sus scrofa OX=9823 GN=CEP192 PE=4 SV=4 CANONICAL=F1SMB8-1" }, "locus": { "chromosome": "6", "start_pos": 96664212, "end_pos": 96611864, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004070.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004070.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003978.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003978.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2565942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "resource": "Reactome", "description": "Regulation of PLK1 Activity at G2/M Transition" }, { "id": "R-SSC-380259", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "resource": "Reactome", "description": "Loss of Nlp from mitotic centrosomes" }, { "id": "R-SSC-380270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "resource": "Reactome", "description": "Recruitment of mitotic centrosome proteins and complexes" }, { "id": "R-SSC-380284", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "resource": "Reactome", "description": "Loss of proteins required for interphase microtubule organization from the centrosome" }, { "id": "R-SSC-380320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "resource": "Reactome", "description": "Recruitment of NuMA to mitotic centrosomes" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" }, { "id": "R-SSC-8854518", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "resource": "Reactome", "description": "AURKA Activation by TPX2" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "centrosome-templated microtubule nucleation", "id": "GO:0090222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090222", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" }, { "name": "mitotic spindle assembly", "id": "GO:0090307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090307", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" }, { "name": "centrosome cycle", "id": "GO:0007098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007098", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" }, { "name": "centrosome duplication", "id": "GO:0051298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051298", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" }, { "name": "protein localization to centrosome", "id": "GO:0071539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071539", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" }, { "name": "pericentriolar material", "id": "GO:0000242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000242", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" }, { "name": "procentriole", "id": "GO:0120098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120098", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatase binding", "id": "GO:0019902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019902", "evidence": [ { "database": "UniProtKB", "id": "F1SMB8", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1078, "end_pos": 1080, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1119, "end_pos": 1121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1423, "end_pos": 1425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1483, "end_pos": 1485, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1522, "end_pos": 1524, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1602, "end_pos": 1604, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1792, "end_pos": 1794, "annotation": "n_glycosylation_sequon" }, { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 851, "end_pos": 853, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" }, { "id": "PF22060", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22060" }, { "id": "PF22064", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22064" }, { "id": "PF22067", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22067" }, { "id": "PF22074", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22074" }, { "id": "PF22076", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22076" }, { "id": "PF22065", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22065" }, { "id": "PF22066", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22066" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cep192-like", "eco_id": "ECO_0000259", "start_pos": 696, "end_pos": 817, "start_aa": "Phe", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SMB8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMB8" }, { "id": "PF22073", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22073" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cep192/Spd-2-like", "eco_id": "ECO_0000259", "start_pos": 1091, "end_pos": 1208, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 1078, "end_pos": 1080 }, { "start_pos": 1119, "end_pos": 1121 }, { "start_pos": 135, "end_pos": 137 }, { "start_pos": 1423, "end_pos": 1425 }, { "start_pos": 1483, "end_pos": 1485 }, { "start_pos": 1522, "end_pos": 1524 }, { "start_pos": 1602, "end_pos": 1604 }, { "start_pos": 1792, "end_pos": 1794 }, { "start_pos": 222, "end_pos": 224 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 31, "end_pos": 33 }, { "start_pos": 328, "end_pos": 330 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 851, "end_pos": 853 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMC2-1", "uniprot_ac": "F1SMC2", "uniprot_id": "F1SMC2_PIG", "mass": { "chemical_mass": 217520.0, "monoisotopic_mass": 217520.0 }, "refseq": { "ac": "XP_003356375", "name": "zinc finger protein Rlf isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356375" }, "gene_names": [ { "name": "RLF", "type": "recommended", "evidence": [ { "id": "F1SMC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" } ] }, { "name": "RLF", "type": "synonym", "evidence": [ { "id": "XP_003356375", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356375" } ] } ], "protein_names": [ { "name": "RLF zinc finger", "type": "synonym", "evidence": [ { "id": "F1SMC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMC2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein Rlf isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003356375", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356375" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RLF", "url": "https://www.uniprot.org/uniprotkb/F1SMC2", "locus": { "chromosome": "6", "start_pos": 95994043, "end_pos": 95900086, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003670", "url": "https://www.ensembl.org/id/ENSSSCG00000003670" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003670", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003670", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100620967", "url": "https://www.ncbi.nlm.nih.gov/gene/100620967", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057986", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057986", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620967", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620967", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SMC2", "url": "https://www.orthodb.org/?gene=F1SMC2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15507", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15507", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15507:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15507:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25420", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25420", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25580", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25580", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26218", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26218", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003356375", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356375", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMC2-1", "url": "https://www.uniprot.org/uniprotkb/F1SMC2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADGKGDAAAAAAAAGAGAEAPAGAGAGDGTETESMARGHSSTSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQTLLQYASNKNASEHIVYLLEVYRLAIQSFASARPYLTTECEDVLLVLGRLVLSCFELLLSVSESELPCEAWVLFLQSLQESHDALLEFGNNNLQILVHVTKEGVWKNPILLKILSQQPVETEEVNKLIAQEGPFFLQMRIKHLLKSNCIPQATALSKVCAESKEISNVSSFQQAYITCLCSILPNEDAIKEIAKVDCKEVLDIICNLESEGQDNTAFVLCTTYLTQQLQTASVYCSWELTLFWSKLQRRIDPSVDTFLERCRQFGVIAKTQQHLFCLIRVIQTEAQDAGLGVSILLCVRALQLRSSEDEEMKASVCKTIACLLPEDLEVRRACQLTEFLIEPSLDGFNMLEELYSQPDQKFDEENAPVPNSLRCELLLALKAHWPFDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYEEGKEDKQYRRRDMTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTCPVCIKKFKRKEIFVPHVMEHVKMPPSRRDRSRKKLLLKSSQKGICPKSPSTTLEQSQSLNEAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSVHLKAEHQNNDENAKHYLDMKNRREKCTYCRRHFMSAFHLREHEQVHCGPQPYMCVSIDCYARFGSVNELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNFVGCKKFYYSKIEYQNHLSMHNVDNSNGDVKKSVKLEEPAASEKQDCIAQTHLLNQADKSHLPEDLLFCAGSASSQIETAENLKENSDSNSSDQLSHSSSASMNEELIDTLDHSETMQDILLSHEKVFVPSSLKEKCSSVAVCFDGTKFTCGFDGCGSTYKNAKGMQKHLRKVHPYHFKPKKIKTKDLFPCLGNEHNQTTEKFDAEPKPSSDTNSDSPDEGLDHNIHTKCKREHQGYSSEASICASKRPCTEDTMLELLLRLKHLSLKNSITHGSFSGSLQGYPSSGAKSLQAVSSISDLNFQNQDENMPSQYLAQLAAKPFFCELQGCKYEFVTREALLMHYLKKHNYSKEKVLQLTMFQHRYSPFQCHICQRSFTRKTHLRIHYKNKHQIGSDRVTQKLLDNEKCDHEGPCSVDRLKGDCSAELGPDPNSNSEKPHCHSKKDECSSETDLESSCEETESKTSDISSPISGHREEGEGREGRGSRRTVAKGNLCYILNKYHKPFHCIHKTCNSSFTNLKGLIRHYRTVHQYNKEQLCLEKDKARTKRELVKCKKIFACKYKECNKRFLCSKALAKHCSDSHNLDHIEEPKVLSEAESAARFSCNQPQCPAVFYTFSKLKHHLMEQHNIEGEIHSDYEIHCDLNGCGQIFTHRSNYSQHVYYRHKDYYDDLFRSQKVANERLLRSEKVCQTAHTQGHEHQTTRKSFNANKAKKCGLIKEKKAPISFKTRAEALHMCVEHSEHTQYPCMVQGCLSVVKLESSIVRHYKRTHQMSSAYLEQQMENLVVCVKYGTKIKEEPPSETEPCIKTEEDRSCESELTKHSHSPGDSSIPVQTADSLHLGERDGGPKGCTESNPVFDADTLLYRGTLKCNHSSETTSLEQCNIVQPPPCKIENSIPNPNGTESGTYFTSFQLPLPRIKDSETGQQSSGQENTVKNITHVPKENFRKHPQPRSFDLKTYKPMGFESSFLKFIQESEEKEDDFDDWEPSEHLTLNNSSQPSNDLTGSVMANNMVNDSDPQVDIPHSSSDSAIHENLTAIPPLIVAETTTVPSLENLRVVLDKALTDCGELALKQLHYLRPVVVLERSKFSTPILDLFPTKKTDELCVGSS", "length": 1915, "header": "tr|F1SMC2-1|F1SMC2_PIG Isoform 1 of RLF zinc finger OS=Sus scrofa OX=9823 GN=RLF PE=3 SV=3 CANONICAL=F1SMC2-1" }, "isoforms": [ { "isoform_ac": "F1SMC2-1", "url": "https://www.uniprot.org/uniprotkb/F1SMC2/entry#F1SMC2-1", "sequence": { "sequence": "MADGKGDAAAAAAAAGAGAEAPAGAGAGDGTETESMARGHSSTSPAPGASGLRPCLWQLETELREQEVSEVSSLNYCRSFCQTLLQYASNKNASEHIVYLLEVYRLAIQSFASARPYLTTECEDVLLVLGRLVLSCFELLLSVSESELPCEAWVLFLQSLQESHDALLEFGNNNLQILVHVTKEGVWKNPILLKILSQQPVETEEVNKLIAQEGPFFLQMRIKHLLKSNCIPQATALSKVCAESKEISNVSSFQQAYITCLCSILPNEDAIKEIAKVDCKEVLDIICNLESEGQDNTAFVLCTTYLTQQLQTASVYCSWELTLFWSKLQRRIDPSVDTFLERCRQFGVIAKTQQHLFCLIRVIQTEAQDAGLGVSILLCVRALQLRSSEDEEMKASVCKTIACLLPEDLEVRRACQLTEFLIEPSLDGFNMLEELYSQPDQKFDEENAPVPNSLRCELLLALKAHWPFDPEFWDWKTLKRHCHQLLGQEASDSDDDLSGYEMSINDTDVLESFLSDYEEGKEDKQYRRRDMTDQHKEKRDKKPIGSSERYQRWLQYKFFCLLCKRECIEARILHHSKMHMEDGIYTCPVCIKKFKRKEIFVPHVMEHVKMPPSRRDRSRKKLLLKSSQKGICPKSPSTTLEQSQSLNEAKGESHEYVTFSKLEDCHLQDRDLYPCPGTDCSRVFKQFKYLSVHLKAEHQNNDENAKHYLDMKNRREKCTYCRRHFMSAFHLREHEQVHCGPQPYMCVSIDCYARFGSVNELLNHKQKHDDLRYKCELNGCNIVFSDLGQLYHHEAQHFRDASYTCNFVGCKKFYYSKIEYQNHLSMHNVDNSNGDVKKSVKLEEPAASEKQDCIAQTHLLNQADKSHLPEDLLFCAGSASSQIETAENLKENSDSNSSDQLSHSSSASMNEELIDTLDHSETMQDILLSHEKVFVPSSLKEKCSSVAVCFDGTKFTCGFDGCGSTYKNAKGMQKHLRKVHPYHFKPKKIKTKDLFPCLGNEHNQTTEKFDAEPKPSSDTNSDSPDEGLDHNIHTKCKREHQGYSSEASICASKRPCTEDTMLELLLRLKHLSLKNSITHGSFSGSLQGYPSSGAKSLQAVSSISDLNFQNQDENMPSQYLAQLAAKPFFCELQGCKYEFVTREALLMHYLKKHNYSKEKVLQLTMFQHRYSPFQCHICQRSFTRKTHLRIHYKNKHQIGSDRVTQKLLDNEKCDHEGPCSVDRLKGDCSAELGPDPNSNSEKPHCHSKKDECSSETDLESSCEETESKTSDISSPISGHREEGEGREGRGSRRTVAKGNLCYILNKYHKPFHCIHKTCNSSFTNLKGLIRHYRTVHQYNKEQLCLEKDKARTKRELVKCKKIFACKYKECNKRFLCSKALAKHCSDSHNLDHIEEPKVLSEAESAARFSCNQPQCPAVFYTFSKLKHHLMEQHNIEGEIHSDYEIHCDLNGCGQIFTHRSNYSQHVYYRHKDYYDDLFRSQKVANERLLRSEKVCQTAHTQGHEHQTTRKSFNANKAKKCGLIKEKKAPISFKTRAEALHMCVEHSEHTQYPCMVQGCLSVVKLESSIVRHYKRTHQMSSAYLEQQMENLVVCVKYGTKIKEEPPSETEPCIKTEEDRSCESELTKHSHSPGDSSIPVQTADSLHLGERDGGPKGCTESNPVFDADTLLYRGTLKCNHSSETTSLEQCNIVQPPPCKIENSIPNPNGTESGTYFTSFQLPLPRIKDSETGQQSSGQENTVKNITHVPKENFRKHPQPRSFDLKTYKPMGFESSFLKFIQESEEKEDDFDDWEPSEHLTLNNSSQPSNDLTGSVMANNMVNDSDPQVDIPHSSSDSAIHENLTAIPPLIVAETTTVPSLENLRVVLDKALTDCGELALKQLHYLRPVVVLERSKFSTPILDLFPTKKTDELCVGSS", "length": 1915, "header": "tr|F1SMC2-1|F1SMC2_PIG Isoform 1 of RLF zinc finger OS=Sus scrofa OX=9823 GN=RLF PE=3 SV=3 CANONICAL=F1SMC2-1" }, "locus": { "chromosome": "6", "start_pos": 95993571, "end_pos": 95900109, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004066.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004066.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003974.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003974.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620967", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620967", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SMC2", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1003, "end_pos": 1005, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1154, "end_pos": 1156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1319, "end_pos": 1321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1461, "end_pos": 1463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1677, "end_pos": 1679, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1706, "end_pos": 1708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1742, "end_pos": 1744, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1800, "end_pos": 1802, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1801, "end_pos": 1803, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1820, "end_pos": 1822, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1840, "end_pos": 1842, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" }, { "start_pos": 896, "end_pos": 898, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMC2" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 585, "end_pos": 612, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1003, "end_pos": 1005 }, { "start_pos": 1154, "end_pos": 1156 }, { "start_pos": 1319, "end_pos": 1321 }, { "start_pos": 1461, "end_pos": 1463 }, { "start_pos": 1677, "end_pos": 1679 }, { "start_pos": 1706, "end_pos": 1708 }, { "start_pos": 1742, "end_pos": 1744 }, { "start_pos": 1800, "end_pos": 1802 }, { "start_pos": 1801, "end_pos": 1803 }, { "start_pos": 1820, "end_pos": 1822 }, { "start_pos": 1840, "end_pos": 1842 }, { "start_pos": 249, "end_pos": 251 }, { "start_pos": 505, "end_pos": 507 }, { "start_pos": 896, "end_pos": 898 }, { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SME8-1", "uniprot_ac": "F1SME8", "uniprot_id": "F1SME8_PIG", "mass": { "chemical_mass": 62701.0, "monoisotopic_mass": 62701.0 }, "refseq": { "ac": "XP_005660444", "name": "multiple epidermal growth factor-like domains protein 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660444" }, "gene_names": [ { "name": "MEGF9", "type": "recommended", "evidence": [ { "id": "F1SME8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ] }, { "name": "MEGF9", "type": "synonym", "evidence": [ { "id": "XP_005660444", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660444" } ] } ], "protein_names": [ { "name": "Multiple epidermal growth factor-like domains protein 9", "type": "recommended", "evidence": [ { "id": "F1SME8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SME8/entry#names_and_taxonomy" } ] }, { "name": "Epidermal growth factor-like protein 5", "type": "synonym", "evidence": [ { "id": "F1SME8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SME8/entry#names_and_taxonomy" } ] }, { "name": "multiple epidermal growth factor-like domains protein 9", "type": "synonym", "evidence": [ { "id": "XP_005660444", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660444" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MEGF9", "url": "https://www.uniprot.org/uniprotkb/F1SME8", "locus": { "chromosome": "1", "start_pos": 260661420, "end_pos": 260756866, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005506", "url": "https://www.ensembl.org/id/ENSSSCG00000005506" } ] } } ], "crossref": [ { "id": "F1SME8", "url": "https://alphafold.ebi.ac.uk/entry/F1SME8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005506", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005506", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00055", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00055", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157028", "url": "https://www.ncbi.nlm.nih.gov/gene/100157028", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157028", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157028", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GTCHTDS", "url": "https://omabrowser.org/oma/group/GTCHTDS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SME8", "url": "https://www.orthodb.org/?gene=F1SME8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574:SF406", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574:SF406", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00053", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00053", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24973", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24973", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005660444", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660444", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SME8-1", "url": "https://www.uniprot.org/uniprotkb/F1SME8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNGGAERAMRSLPSLGGLALLCCAAAAAAASATSAGNVTGGGGAAGQVDASPGPGLGVEPSHPFSKATAATAQTPRIGPHLTTVHRPLAASSSAQSPETTPPPATAGPTPTTFQTPLDTSLTPPPEVERTPTTPRATTRPAPTTVSTTTGPAPTTPIATTVSAPTTPPIRTSVLPPGNSSSVPPTPPATEALSPPPPEYVCNCSVVGSLDVNHCNQTTGQCECQPGYQGLHCETCKEGFHLNHTSGLCLPCNCSPHGALSVLCNSSGKCRCKVGVTGSSCDRCQDGYYDFNKNGCLPCQCNNRSASCDALTGACLNCQDNSKGDHCEECKEGFYQSLDATKECLRCPCSAVTSTGSCIIELGELEPKCVQCKAGYTGQNCNECEHGYYNSDSICMECQCHGHVDPRKTPEICKPDSGECIDCLHNTTGFWCENCLEGYVQDLQGNCIKKEVIVPTPEGSTILVSNASLTTSVPTPVINSTFTPTTLQTIFSVSSAENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQNRKLNAPFWTIELKEDNISFSSYHDSIPNADVSGLLEDDGNEVAPNGQLTLTTPIHNYKA", "length": 599, "header": "tr|F1SME8-1|F1SME8_PIG Isoform 1 of Multiple epidermal growth factor-like domains protein 9 OS=Sus scrofa OX=9823 GN=MEGF9 PE=1 SV=1 CANONICAL=F1SME8-1" }, "isoforms": [ { "isoform_ac": "F1SME8-1", "url": "https://www.uniprot.org/uniprotkb/F1SME8/entry#F1SME8-1", "sequence": { "sequence": "MNGGAERAMRSLPSLGGLALLCCAAAAAAASATSAGNVTGGGGAAGQVDASPGPGLGVEPSHPFSKATAATAQTPRIGPHLTTVHRPLAASSSAQSPETTPPPATAGPTPTTFQTPLDTSLTPPPEVERTPTTPRATTRPAPTTVSTTTGPAPTTPIATTVSAPTTPPIRTSVLPPGNSSSVPPTPPATEALSPPPPEYVCNCSVVGSLDVNHCNQTTGQCECQPGYQGLHCETCKEGFHLNHTSGLCLPCNCSPHGALSVLCNSSGKCRCKVGVTGSSCDRCQDGYYDFNKNGCLPCQCNNRSASCDALTGACLNCQDNSKGDHCEECKEGFYQSLDATKECLRCPCSAVTSTGSCIIELGELEPKCVQCKAGYTGQNCNECEHGYYNSDSICMECQCHGHVDPRKTPEICKPDSGECIDCLHNTTGFWCENCLEGYVQDLQGNCIKKEVIVPTPEGSTILVSNASLTTSVPTPVINSTFTPTTLQTIFSVSSAENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQNRKLNAPFWTIELKEDNISFSSYHDSIPNADVSGLLEDDGNEVAPNGQLTLTTPIHNYKA", "length": 599, "header": "tr|F1SME8-1|F1SME8_PIG Isoform 1 of Multiple epidermal growth factor-like domains protein 9 OS=Sus scrofa OX=9823 GN=MEGF9 PE=1 SV=1 CANONICAL=F1SME8-1" }, "locus": { "chromosome": "1", "start_pos": 260756750, "end_pos": 260666771, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006055.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006055.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005901.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005901.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 109, "start_aa": "Thr", "end_pos": 109, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr109", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 154, "start_aa": "Thr", "end_pos": 154, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr154", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 185, "start_aa": "Thr", "end_pos": 185, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr185", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 455, "start_aa": "Thr", "end_pos": 455, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr455", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157028", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157028", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A3L3-1", "protein_name": "Multiple epidermal growth factor-like domains protein 9", "gene_name": "Megf9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNGGAERAMRSLPSLGGLALFCCAAAAAASAASAGNVTGGGGAEGQVVASPSPGLREQTSSPFSKAAAPTAQAPRTGPPRTTVHRTGAATPSAGSPETIPVRTSAQPAATLFPVVDLSSATPSEDGHTPTTEPLPSRPAPTTLASTAGQAPTTSVVTTAQASSTPGTPTAESPDRGRNSSRVPPTAPVTEAPTPPPPEYMCNCSEVGSLDVKRCNQTTGQCDCHVGYQGLHCDTCKEGFYLNHTVGLCLPCHCSPRGAVSILCNSSGNCQCKLGVTGSMCDQCQDGHYGFGKTGCLPCQCNNRSDSCDVLTGACLNCQENTKGEHCEECKEGFYQSPDAARECLRCPCSAVTSTGNCTIEFGALEPTCDQCKDGYTGQNCNTCENGYYHSDSICLQCECHGHVDPIKTPKICKPESGECINCLHNTTGLWCEKCLEGYVRDLQRNCIKQEVIVPTPEGSTILVSNASLTTSVPTPVINSTFAPTTLQTIFSVSSSENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQNRKLNAPFWTIELKEDNISFSSYHDSIPNADVSGLLEDDANEVAPNGQLTLTTPIHNYKA", "length": 599 }, "evidence": [ { "id": "F1SME8", "url": "https://omabrowser.org/oma/group/F1SME8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MLU6-1", "protein_name": "Multiple epidermal growth factor-like domains protein 9", "gene_name": "MEGF9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNGEAERAMRSLPSLGGLALLCAAAAAAASATSAGNVTGGGGAAGQVDASPGPRLGGEPSHPFSKATAPTAQAPRTGSPRATLHRPQAASSSAQPPETTPPPTTAGPAPTTAAGPARTTSQAPLVPSRVTPPAVERTPTTPWVTTRPAPTTLSTTTGPAPTTPVATTVRAPTAPPNPTSALPGGGGGGGSSSSSVPPTPPATEAPSPPPPEYVCNCSAVGSLGVNRCNQTTGQCECQPGYQGLRCETCTEGFYLNGTSGRCLPCDCNPRGALSTVCSSSGKCQCKVGVTGSSCDRCQDGYYDFNENGCLPCQCNNRSASCDALTGACFNCQDNSEGDHCEECTEGFYQSPDGSKECLRCPCSAVTSTGSCIIKLGESEPECVQCKDGYTGQNCNDCNHGYYNSDSICVECQCHGHVDPVKTPRVCEPESGECISCLHNTTGFWCENCLDGYDRDLEGNCITKEVIVPTPEGSTILVSNASLTTSVPTPVINSTFTPTTPQTIFSVSSAENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQNRKLNAPFWTIELKEDNISFSSYHDSIPNADVSGLLEDDGNEVAPNGQLTLTTPMHNYKA", "length": 612 }, "evidence": [ { "id": "F1SME8", "url": "https://omabrowser.org/oma/group/F1SME8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BH27-1", "protein_name": "Multiple epidermal growth factor-like domains protein 9", "gene_name": "Megf9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNGGAERAMRSLPSLGGLALLCCAAAAAASTASAGNVTGGGGAEGQVVPSPSPGLRDQASSPFPKTAAPTAQAPRTGPPRTTVRKTGATTPSAGSPEIIPPLRTSAQPAATPFPALDLSPATPSEDGHTPTTESPPSRPAPTTLASTVGQPPTTSVVTTAQASSTPGTPTAESPDRSSNSSGVPPTAPVTEAPTSPPPEHMCNCSEVGSLDVKRCNQTTGQCDCHVGYQGLHCDTCKEGFYLNHTVGLCLPCHCSPHGAVSILCNSSGNCQCKVGVTGSMCDKCQDGHYGFGKTGCLPCQCNNRSDSCDVHTGACLNCQENSKGEHCEECKEGFYPSPDAAKQCHRCPCSAVTSTGNCTIESGELEPTCDQCKDGYTGQNCNKCENGYYNSDSICTQCECHGHVDPIKTPKICKPESGECINCLHNTTGFWCEKCLEGYVRDLQRNCIKQEVIVPTPEGSTILVSNASLTTSVPTPVINSTFAPTTLQTIFAVSSSENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQNRKLNAPFWTIELKEDNISFSSYHDSIPNADVSGLLEDDANEVAPNGQLTLTTPIHNYKA", "length": 600 }, "evidence": [ { "id": "F1SME8", "url": "https://omabrowser.org/oma/group/F1SME8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H1U4-1", "protein_name": "Multiple epidermal growth factor-like domains protein 9", "gene_name": "MEGF9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNGGAERAMRSLPSLGGLALLCCAAAAAAAAVASAASAGNVTGGGGAAGQVDASPGPGLRGEPSHPFPRATAPTAQAPRTGPPRATVHRPLAATSPAQSPETTPLWATAGPSSTTFQAPLGPSPTTPPAAERTSTTSQAPTRPAPTTLSTTTGPAPTTPVATTVPAPTTPRTPTPDLPSSSNSSVLPTPPATEAPSSPPPEYVCNCSVVGSLNVNRCNQTTGQCECRPGYQGLHCETCKEGFYLNYTSGLCQPCDCSPHGALSIPCNSSGKCQCKVGVIGSICDRCQDGYYGFSKNGCLPCQCNNRSASCDALTGACLNCQENSKGNHCEECKEGFYQSPDATKECLRCPCSAVTSTGSCSIKSSELEPECDQCKDGYIGPNCNKCENGYYNFDSICRKCQCHGHVDPVKTPKICKPESGECINCLHNTTGFWCENCLEGYVHDLEGNCIKKEVILPTPEGSTILVSNASLTTSVPTPVINSTFTPTTLQTIFSVSTSENSTSALADVSWTQFNIIILTVIIIVVVLLMGFVGAVYMYREYQNRKLNAPFWTIELKEDNISFSSYHDSIPNADVSGLLEDDGNEVAPNGQLTLTTPIHNYKA", "length": 602 }, "evidence": [ { "id": "F1SME8", "url": "https://omabrowser.org/oma/group/F1SME8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "pmid": "" }, { "name": "laminin complex", "id": "GO:0043256", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043256", "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "pmid": "" }, { "name": "animal organ morphogenesis", "id": "GO:0009887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009887", "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "pmid": "" }, { "name": "substrate adhesion-dependent cell spreading", "id": "GO:0034446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034446", "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "pmid": "" }, { "name": "tissue development", "id": "GO:0009888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009888", "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "pmid": "" }, { "name": "basement membrane assembly", "id": "GO:0070831", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070831", "evidence": [ { "database": "UniProtKB", "id": "F1SME8", "url": "https://www.uniprot.org/uniprotkb/F1SME8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 425, "end_pos": 427, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 478, "end_pos": 480, "annotation": "n_glycosylation_sequon" }, { "start_pos": 497, "end_pos": 499, "annotation": "n_glycosylation_sequon" }, { "start_pos": 556, "end_pos": 558, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SME8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 599, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SME8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SME8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SME8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SME8" }, { "id": "PS50027", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50027" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin EGF-like", "eco_id": "ECO_0000259", "start_pos": 201, "end_pos": 250, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 109, 154, 185, 455 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 }, { "start_pos": 202, "end_pos": 204 }, { "start_pos": 215, "end_pos": 217 }, { "start_pos": 242, "end_pos": 244 }, { "start_pos": 252, "end_pos": 254 }, { "start_pos": 264, "end_pos": 266 }, { "start_pos": 302, "end_pos": 304 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 425, "end_pos": 427 }, { "start_pos": 465, "end_pos": 467 }, { "start_pos": 478, "end_pos": 480 }, { "start_pos": 497, "end_pos": 499 }, { "start_pos": 556, "end_pos": 558 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMG7-1", "uniprot_ac": "F1SMG7", "uniprot_id": "F1SMG7_PIG", "mass": { "chemical_mass": 49762.0, "monoisotopic_mass": 49762.0 }, "refseq": { "ac": "XP_020932698", "name": "serine/threonine-protein kinase NIM1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932698" }, "gene_names": [ { "name": "NIM1K", "type": "recommended", "evidence": [ { "id": "F1SMG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMG7" } ] }, { "name": "NIM1K", "type": "synonym", "evidence": [ { "id": "XP_020932698", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932698" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein kinase NIM1", "type": "recommended", "evidence": [ { "id": "F1SMG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMG7/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "F1SMG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMG7/entry#names_and_taxonomy" } ] }, { "name": "NIM1 serine/threonine-protein kinase", "type": "synonym", "evidence": [ { "id": "F1SMG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMG7/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein kinase NIM1", "type": "synonym", "evidence": [ { "id": "XP_020932698", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932698" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMG7", "url": "https://www.uniprot.org/uniprotkb/F1SMG7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NIM1K", "url": "https://www.uniprot.org/uniprotkb/F1SMG7", "locus": { "chromosome": "16", "start_pos": 27930361, "end_pos": 27858157, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016873", "url": "https://www.ensembl.org/id/ENSSSCG00000016873" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016873", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016873", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14075", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14075", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524404", "url": "https://www.ncbi.nlm.nih.gov/gene/100524404", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524404", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524404", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IMSNEWM", "url": "https://omabrowser.org/oma/group/IMSNEWM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMG7", "url": "https://www.orthodb.org/?gene=F1SMG7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24346", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24346", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24346:SF49", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24346:SF49", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020932698", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932698", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SMG7", "url": "https://www.uniprot.org/uniprotkb/F1SMG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMG7-1", "url": "https://www.uniprot.org/uniprotkb/F1SMG7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMTAVYVNGGSLVNSHYARWDRRESVESGCQTECNKEDEEGQPRQLTPFEKLMQDMSQDEKVVREITLGKRIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLVMEYAGGGELFGKISTEGKFSESESKLIFSQIVSAVKHMHENQIIHRDLKAENVFYTSNTCVKVGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDEHYVGIYVDIWALGVLLYFMVTGTMPFRAETVAKLKKSILEGTYSVPPHVSEPCLRLIRGVLQPVPTERYGIDSIMNNEWMQGVPYPTPLEPFQLDPKHLSETSTLKEEENEVKSTLEHLGITEEHIRNNQGRDARSSITGVYRIILHRVQKKKALESVPIMILPDPKERDLKKGSRVYRGIRHTSKFCSIL", "length": 437, "header": "tr|F1SMG7-1|F1SMG7_PIG Isoform 1 of Serine/threonine-protein kinase NIM1 OS=Sus scrofa OX=9823 GN=NIM1K PE=3 SV=2 CANONICAL=F1SMG7-1" }, "isoforms": [ { "isoform_ac": "F1SMG7-1", "url": "https://www.uniprot.org/uniprotkb/F1SMG7/entry#F1SMG7-1", "sequence": { "sequence": "MMTAVYVNGGSLVNSHYARWDRRESVESGCQTECNKEDEEGQPRQLTPFEKLMQDMSQDEKVVREITLGKRIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLVMEYAGGGELFGKISTEGKFSESESKLIFSQIVSAVKHMHENQIIHRDLKAENVFYTSNTCVKVGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDEHYVGIYVDIWALGVLLYFMVTGTMPFRAETVAKLKKSILEGTYSVPPHVSEPCLRLIRGVLQPVPTERYGIDSIMNNEWMQGVPYPTPLEPFQLDPKHLSETSTLKEEENEVKSTLEHLGITEEHIRNNQGRDARSSITGVYRIILHRVQKKKALESVPIMILPDPKERDLKKGSRVYRGIRHTSKFCSIL", "length": 437, "header": "tr|F1SMG7-1|F1SMG7_PIG Isoform 1 of Serine/threonine-protein kinase NIM1 OS=Sus scrofa OX=9823 GN=NIM1K PE=3 SV=2 CANONICAL=F1SMG7-1" }, "locus": { "chromosome": "16", "start_pos": 27930248, "end_pos": 27913600, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018377.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018377.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017881.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017881.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 333, "start_aa": "Thr", "end_pos": 333, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr333", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMG7", "url": "https://www.uniprot.org/uniprotkb/F1SMG7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524404", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524404", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YNI5-1", "protein_name": "Serine/threonine-protein kinase NIM1", "gene_name": "NIM1K", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNQRKTQCSAFGLVPESGATFLSVCYVRDCILTEKYFTSLNSLLGHFVQWRSDYLQTMTTGFVNGGGLGKHRYARWNREDSGEDYGREECCGGDEEGRQQRLTPLEKLMQDMSHNEKVVKELTLGKRIGFYRVRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLVMEYAGGGELFTKITTEGKLIETDCKIIFSQIVSAVKHMHENNIIHRDLKAENVFYTSNTCVKVGDFGFSTISKRDETLNTFCGSPPYAAPELFRDENYVGIYVDIWALGILLYFMITGIMPFRADTVAKLKKCILEGTYSLPPCLSEACQKLIKGVLQPVPTERYSVKLIMNSEWMQGIQYPKPLQPFKLDPKYLSEISTLKEEEIEVKNALKDLGITEEHIKNNQGRDARSSITGVYRIVLHKVQKKRALECVPIMSHPDPKEQDIKKGISSCNGVKHTSKLCSIL", "length": 493 }, "evidence": [ { "id": "F1SMG7", "url": "https://omabrowser.org/oma/group/F1SMG7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A9H8-1", "protein_name": "Serine/threonine-protein kinase NIM1", "gene_name": "Nim1k", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTAVVVNGGGLVNTHCDRWDRRDSAEGSCQTEGSKDGEEDQPRQLTPFEKLTQDMCQDEKVVREITLGKRIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIVRLYEVVETLSKLHLVMEYAGGGELFGKISTEGKLSEPESKLIFSQIVSAVKHMHENQIIHRDLKAENVFYTSSTCVKVGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDEHYVGVYVDIWALGVLLYFMVTGTMPFRAETVAKLKKSILEGAYSIPQHVSEPCHRLIRGVLQPTPAERYGINYIMSNEWMRGVPYPSPLEPFQLDPKHLSETSTLKEEENEVKSTLEHLGITDEHIRNNQGRDARSSITGVYRIILHRVQRRKALESVPMATLPEPKDKDLKKGSRVYRGIRHTSKFCSIL", "length": 436 }, "evidence": [ { "id": "F1SMG7", "url": "https://omabrowser.org/oma/group/F1SMG7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BN72-1", "protein_name": "Serine/threonine-protein kinase NIM1", "gene_name": "NIM1K", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTAVYVNGGGLVNPHCARWGRRESEESGCQTECAKEDEEGEPRQLTPFEKLTQDMSQDEKVVREITLGKRIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLVMEYAGGGELFGKISMEGKFSEPESKLIFSQIVSAVKHMHENQIIHRDLKAENVFYTNNTCVKVGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDEHYVGVYVDIWALGVLLYFMVTGTMPFRAETVAKLKKSILEGTYSVPPHVSEPCLRLIRGVLQPVPAERYGIDSIMNNEWMQGVPYPTPLEPFQLDPKHLSETSSLKEEENEVKSTLEHLGITEEHIRNNQGRDARSSITGVYRIILHRVQKKKALESVPIMILPDPKDKDLKKGSRVYRGIRHTSKFCSIL", "length": 436 }, "evidence": [ { "id": "F1SMG7", "url": "https://omabrowser.org/oma/group/F1SMG7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HMY1-1", "protein_name": "Serine/threonine-protein kinase NIM1", "gene_name": "Nim1k", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTAVFANGGGLVNTHCDRWDRRDSVESSCQTECGQEGEEDQPRQLTPFEKLTQDMCQDEKVVREITLGKRIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLVMEYAGGGELFGKISTEGKLSEPESKLIFSQIVSAVKHMHENQIIHRDLKAENVFYTSSTCVKVGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDEHYIGVYVDIWALGVLLYFMVTGTMPFRAETVAKLKKSILEGTYSIPQHVSEPCHRLIRGVLQPIPTERYGISYIMNNEWMRGVPYPTPLQPFQLDPKHLSEASSLEEEENEVKSTLEHLGITDEHIRNNPGRDARSSITGVYRIILHRVQRKKALESVPIMILPEPKERDLKKGSRIYRGIRHTSKFCSIL", "length": 436 }, "evidence": [ { "id": "F1SMG7", "url": "https://omabrowser.org/oma/group/F1SMG7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8BHI9-1", "protein_name": "Serine/threonine-protein kinase NIM1", "gene_name": "Nim1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTAVFVNGGGLVNTHCDRWERRDSVESSCQTEGGKDSEEDQQRQLTPFEKLTQDMCQDEKVVREITLGKRIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIVRLYEVVETLSKLHLVMEYAGGGELFGKISTEGKLSEPESKLIFSQILSAVKHMHENQIIHRDLKAENVFYTSRTCVKVGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDQHYVGVYVDIWALGVLLYFMVTGTMPFRAETVAKLKKSILEGTYTIPQHVSEPCHRLIRGVLQPTPTERYGINYIMSNEWMRGVPYPTPLEPFQLDPKHLSETSTLKEEENEVKSTLEHLGITDEHIRNNQGRDARSSITGVYRIILHRVQRRKALESVPIMILPEPKERDLKKGSRIYRGIRHTSKFCSIL", "length": 436 }, "evidence": [ { "id": "F1SMG7", "url": "https://omabrowser.org/oma/group/F1SMG7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IY84-1", "protein_name": "Serine/threonine-protein kinase NIM1", "gene_name": "NIM1K", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTAVYMNGGGLVNPHYARWDRRDSVESGCQTESSKEGEEGQPRQLTPFEKLTQDMSQDEKVVREITLGKRIGFYRIRGEIGSGNFSQVKLGIHSLTKEKVAIKILDKTKLDQKTQRLLSREISSMEKLHHPNIIRLYEVVETLSKLHLVMEYAGGGELFGKISTEGKLSEPESKLIFSQIVSAVKHMHENQIIHRDLKAENVFYTSNTCVKVGDFGFSTVSKKGEMLNTFCGSPPYAAPELFRDEHYIGIYVDIWALGVLLYFMVTGTMPFRAETVAKLKKSILEGTYSVPPHVSEPCHRLIRGVLQQIPTERYGIDCIMNDEWMQGVPYPTPLEPFQLDPKHLSETSTLKEEENEVKSTLEHLGITEEHIRNNQGRDARSSITGVYRIILHRVQRKKALESVPVMMLPDPKERDLKKGSRVYRGIRHTSKFCSIL", "length": 436 }, "evidence": [ { "id": "F1SMG7", "url": "https://omabrowser.org/oma/group/F1SMG7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F1SMG7", "url": "https://www.uniprot.org/uniprotkb/F1SMG7" } ], "pmid": "" }, { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SMG7", "url": "https://www.uniprot.org/uniprotkb/F1SMG7" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SMG7", "url": "https://www.uniprot.org/uniprotkb/F1SMG7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SMG7", "url": "https://www.uniprot.org/uniprotkb/F1SMG7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMG7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMG7" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 75, "end_pos": 326, "start_aa": "Tyr", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 333 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMI4-1", "uniprot_ac": "F1SMI4", "uniprot_id": "F1SMI4_PIG", "mass": { "chemical_mass": 180915.0, "monoisotopic_mass": 180915.0 }, "refseq": {}, "gene_names": [ { "name": "PAPPA", "type": "recommended", "evidence": [ { "id": "F1SMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMI4" } ] } ], "protein_names": [ { "name": "Pappalysin-1", "type": "recommended", "evidence": [ { "id": "F1SMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMI4/entry#names_and_taxonomy" } ] }, { "name": "3.4.24.79", "type": "synonym", "evidence": [ { "id": "F1SMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMI4/entry#names_and_taxonomy" } ] }, { "name": "Insulin-like growth factor-dependent IGF-binding protein 4 protease", "type": "synonym", "evidence": [ { "id": "F1SMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMI4/entry#names_and_taxonomy" } ] }, { "name": "Pregnancy-associated plasma protein A", "type": "synonym", "evidence": [ { "id": "F1SMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMI4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMI4", "url": "https://www.uniprot.org/uniprotkb/F1SMI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PAPPA", "url": "https://www.uniprot.org/uniprotkb/F1SMI4", "locus": { "chromosome": "1", "start_pos": 256780760, "end_pos": 256544928, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005498", "url": "https://www.ensembl.org/id/ENSSSCG00000005498" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005498", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005498", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00033", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00033", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04275", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04275", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000800", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000800", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006558", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006558", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008754", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008754", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035976", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035976", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46130", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46130", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46130:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46130:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00084", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00084", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05572", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13385", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13385", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25900", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25900", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SMI4", "url": "https://www.uniprot.org/uniprotkb/F1SMI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLWSWVLRLGLLSAALGCGLAERPRRARRDPRAGPPRPAAGPATCATRAARGRRASPPPPPPPPGGAWEAVRVPRRRQQREARGAAEEPSPPSRALYFSGRGEQLRLRADLELPRDAFTLQVWLRAEGGQRSPAVITGLYDKCSYASRDRGWVVGIHTVSDQGNRDPRYFFSLKTDRARQVTTINAHRSYLPGQWVYLAATYDGRLMKLYVNGAQVATSGEQVGGIFSPLTQKCKVLMLGGSALNHNYRGYVERFSLWKVARTQQEVLLDMETHGLHTPLPQLLLQENWDNVKRAWSPMKDGSSPRVEFSGAHDFLLDTSLEPPLCGQTLCDNMEVIASYNQLPRFRRPKVVRYRVVNLHDDDHENPTVSRQQIDFQHGQLAEAFRHYNISWELEVLEVSNSSLRHRLILANCDISKIGDENCDPECNHTLTGHDGGDCRHLRHPAFMKKQQNGVCDMDCNYERFNFDGGECCDPEITDVTKTCFDPDSPYRAYLDVNELKNILRLDGSTHLNIFFANSSEEELAGVATWPWDKEALMHLGGIVLNPSFYGIPGHTHTMIHEIGHSLGLYHIFRGISEIQSCSDPCMETEPSFETGDLCSDTNPAPKHKFCGDPGPGNDTCGFNSFFNTPYNNFMSYADDDCTDSFTPNQVARMHCYLDLVYQSWQPSRKPAPIALAPQIVSHTTDSVTLEWFPPIDGHFFERELGSACDLCLEGRILVQYAFNASSPMPCGPSGHWSPREAEGHPDVEQPCKSSVRTWSPNSAVNPHTVPPACPEPQGCYLELEFRYPLVPESLTIWVTFVSTDWDSSGAVNDIKLLTVSGKNISLGPQNVFCDVPLTIKLQDVGEGVYGIQIYTLDEHLEIDAAMLTSVADSPLCLECKPLQYKVVRDPPLQVDVASMLHFSRRFTDVDLHLGSVYQYWVITISGNEESEPSPAVIYTHGSGYCGDGIIQKSEGEECDDMNKVSGDGCSLFCRQEVSFNCIDEPSRCYFHDGDGVCEEFEQKTSIKDCGVYTPQGFLDQWASNASVSHQDQQCPGWVIIGQPAASQVCRTKVIDLSEGISQHAWYPCTIPYPYSQVAQTTFWLRAYFSQPMVAAAVIVHLVTDGTYYGDQKQETISIQLLDTKDQSHDLGLHVLSCRNNPLIIPVVHDLSQPFYHSQAVRVSFSSPLVAISGVALRSFDSFDPVTLSSCQRGETYSSAQQSCVHFACEAADCPQLAVENASLNCSSSDHYHGAQCTVSCRTGYVLQIQRDDELIKSQTGPSVTVTCTEGKWNKQVACEPVDCGIPDQHHVYAASFSCLEGTTFGRKCSFQCRHPAQLKGNNSFLTCMEDGLWSFPEALCELMCLAPPPVPNADLQTARCRENKHKVGSFCKYKCKPGYHVPGSSRKSKKRAFKTQCTQDGSWQEGACVPVTCDPPPPKFHGLYQCTNGFQFNSECRIKCEESDTAQGRGSNVIHCRKDGTWSGSFHLCQEMQGQCSAPDQLNSNLKLQCPEGYAIGSECSTSCLDHNSESIILPVNVTVRDIPHWLNPTRVERVICTAGLKWYPHPALIHCVKGCEPFMGDNYCDAINNRAFCNYDGGDCCASTVKTKKVTPFPMSCDLQGDCACRDPQAQEHSRKDLRGYSHG", "length": 1627, "header": "tr|F1SMI4-1|F1SMI4_PIG Isoform 1 of Pappalysin-1 OS=Sus scrofa OX=9823 GN=PAPPA PE=3 SV=3 CANONICAL=F1SMI4-1" }, "isoforms": [ { "isoform_ac": "F1SMI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMI4/entry#F1SMI4-1", "sequence": { "sequence": "MRLWSWVLRLGLLSAALGCGLAERPRRARRDPRAGPPRPAAGPATCATRAARGRRASPPPPPPPPGGAWEAVRVPRRRQQREARGAAEEPSPPSRALYFSGRGEQLRLRADLELPRDAFTLQVWLRAEGGQRSPAVITGLYDKCSYASRDRGWVVGIHTVSDQGNRDPRYFFSLKTDRARQVTTINAHRSYLPGQWVYLAATYDGRLMKLYVNGAQVATSGEQVGGIFSPLTQKCKVLMLGGSALNHNYRGYVERFSLWKVARTQQEVLLDMETHGLHTPLPQLLLQENWDNVKRAWSPMKDGSSPRVEFSGAHDFLLDTSLEPPLCGQTLCDNMEVIASYNQLPRFRRPKVVRYRVVNLHDDDHENPTVSRQQIDFQHGQLAEAFRHYNISWELEVLEVSNSSLRHRLILANCDISKIGDENCDPECNHTLTGHDGGDCRHLRHPAFMKKQQNGVCDMDCNYERFNFDGGECCDPEITDVTKTCFDPDSPYRAYLDVNELKNILRLDGSTHLNIFFANSSEEELAGVATWPWDKEALMHLGGIVLNPSFYGIPGHTHTMIHEIGHSLGLYHIFRGISEIQSCSDPCMETEPSFETGDLCSDTNPAPKHKFCGDPGPGNDTCGFNSFFNTPYNNFMSYADDDCTDSFTPNQVARMHCYLDLVYQSWQPSRKPAPIALAPQIVSHTTDSVTLEWFPPIDGHFFERELGSACDLCLEGRILVQYAFNASSPMPCGPSGHWSPREAEGHPDVEQPCKSSVRTWSPNSAVNPHTVPPACPEPQGCYLELEFRYPLVPESLTIWVTFVSTDWDSSGAVNDIKLLTVSGKNISLGPQNVFCDVPLTIKLQDVGEGVYGIQIYTLDEHLEIDAAMLTSVADSPLCLECKPLQYKVVRDPPLQVDVASMLHFSRRFTDVDLHLGSVYQYWVITISGNEESEPSPAVIYTHGSGYCGDGIIQKSEGEECDDMNKVSGDGCSLFCRQEVSFNCIDEPSRCYFHDGDGVCEEFEQKTSIKDCGVYTPQGFLDQWASNASVSHQDQQCPGWVIIGQPAASQVCRTKVIDLSEGISQHAWYPCTIPYPYSQVAQTTFWLRAYFSQPMVAAAVIVHLVTDGTYYGDQKQETISIQLLDTKDQSHDLGLHVLSCRNNPLIIPVVHDLSQPFYHSQAVRVSFSSPLVAISGVALRSFDSFDPVTLSSCQRGETYSSAQQSCVHFACEAADCPQLAVENASLNCSSSDHYHGAQCTVSCRTGYVLQIQRDDELIKSQTGPSVTVTCTEGKWNKQVACEPVDCGIPDQHHVYAASFSCLEGTTFGRKCSFQCRHPAQLKGNNSFLTCMEDGLWSFPEALCELMCLAPPPVPNADLQTARCRENKHKVGSFCKYKCKPGYHVPGSSRKSKKRAFKTQCTQDGSWQEGACVPVTCDPPPPKFHGLYQCTNGFQFNSECRIKCEESDTAQGRGSNVIHCRKDGTWSGSFHLCQEMQGQCSAPDQLNSNLKLQCPEGYAIGSECSTSCLDHNSESIILPVNVTVRDIPHWLNPTRVERVICTAGLKWYPHPALIHCVKGCEPFMGDNYCDAINNRAFCNYDGGDCCASTVKTKKVTPFPMSCDLQGDCACRDPQAQEHSRKDLRGYSHG", "length": 1627, "header": "tr|F1SMI4-1|F1SMI4_PIG Isoform 1 of Pappalysin-1 OS=Sus scrofa OX=9823 GN=PAPPA PE=3 SV=3 CANONICAL=F1SMI4-1" }, "locus": { "chromosome": "1", "start_pos": 256779018, "end_pos": 256544928, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006045.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006045.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005893.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005893.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMI4", "url": "https://www.uniprot.org/uniprotkb/F1SMI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "F1SMI4", "url": "https://www.uniprot.org/uniprotkb/F1SMI4" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SMI4", "url": "https://www.uniprot.org/uniprotkb/F1SMI4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SMI4", "url": "https://www.uniprot.org/uniprotkb/F1SMI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SMI4", "url": "https://www.uniprot.org/uniprotkb/F1SMI4" } ], "pmid": "" }, { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "F1SMI4", "url": "https://www.uniprot.org/uniprotkb/F1SMI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1026, "end_pos": 1028, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1222, "end_pos": 1224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1226, "end_pos": 1228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1323, "end_pos": 1325, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1519, "end_pos": 1521, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 429, "end_pos": 431, "annotation": "n_glycosylation_sequon" }, { "start_pos": 519, "end_pos": 521, "annotation": "n_glycosylation_sequon" }, { "start_pos": 619, "end_pos": 621, "annotation": "n_glycosylation_sequon" }, { "start_pos": 725, "end_pos": 727, "annotation": "n_glycosylation_sequon" }, { "start_pos": 825, "end_pos": 827, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-381518", "name": "PAAP-A proteolyzes IGF:IGFBP4", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "extracellular region", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-381518", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381518" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMI4" }, { "id": "PS50923", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50923" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sushi", "eco_id": "ECO_0000259", "start_pos": 1213, "end_pos": 1282, "start_aa": "Ala", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1026, "end_pos": 1028 }, { "start_pos": 1222, "end_pos": 1224 }, { "start_pos": 1226, "end_pos": 1228 }, { "start_pos": 1323, "end_pos": 1325 }, { "start_pos": 1519, "end_pos": 1521 }, { "start_pos": 390, "end_pos": 392 }, { "start_pos": 402, "end_pos": 404 }, { "start_pos": 429, "end_pos": 431 }, { "start_pos": 519, "end_pos": 521 }, { "start_pos": 619, "end_pos": 621 }, { "start_pos": 725, "end_pos": 727 }, { "start_pos": 825, "end_pos": 827 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMJ1-1", "uniprot_ac": "F1SMJ1", "uniprot_id": "F1SMJ1_PIG", "mass": { "chemical_mass": 92593.0, "monoisotopic_mass": 92593.0 }, "refseq": {}, "gene_names": [ { "name": "C7", "type": "recommended", "evidence": [ { "id": "F1SMJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ] } ], "protein_names": [ { "name": "Complement component C7", "type": "recommended", "evidence": [ { "id": "F1SMJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the membrane attack complex (MAC), a multiprotein complex activated by the complement cascade, which inserts into a target cell membrane and forms a pore, leading to target cell membrane rupture and cell lysis. The MAC is initiated by proteolytic cleavage of C5 into complement C5b in response to the classical, alternative, lectin and GZMK complement pathways. The complement pathways consist in a cascade of proteins that leads to phagocytosis and breakdown of pathogens and signaling that strengthens the adaptive immune system. C7 serves as a membrane anchor. During MAC assembly, associates with C5b and C6 to form the C5b-7 complex, a key lipophilic precursor of the MAC complex, which associates with the outer leaflet and reduces the energy for membrane bending.", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1#function" }, { "database": "UniProtKB", "id": "ARBA00093281", "url": "https://www.uniprot.org/uniprotkb/ARBA00093281#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C7", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1", "locus": { "chromosome": "16", "start_pos": 25903980, "end_pos": 25846860, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016859", "url": "https://www.ensembl.org/id/ENSSSCG00000016859" } ] } } ], "crossref": [ { "id": "F1SMJ1", "url": "https://alphafold.ebi.ac.uk/entry/F1SMJ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016859", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016859", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00033", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00033", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00112", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00112", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020864", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020864", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035976", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035976", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048825", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048825", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45742", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45742", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45742:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45742:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00084", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00084", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01823", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01823", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18434", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18434", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21330", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21330", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-166665", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-166665", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-977606", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "AMSLVFLVGLIGEFQVFSSASSPVNCQWDSYAPWSECNGCTKTQTRRRPIAVYGQYGGHPCVGSMFETQSCEPTRGCPTEEGCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDRCEDSESRPSCDLSKPPPNIELTGNGYNALTGQFRNRVLNTKSFGGQCRKVFSGDGRDFYRLSGNVLSYTFQVKVNNDFNYEFYNSTWSYAKHTSTEHTSSSKGRVFIFSSSSSSSSYYAKTYEILKKKSYQLLVVQNTVEVAQFINNNPEFLQLAESFWKELSYLPPLYDYSAYRLIDQYGTHYLQSGSLGGEYKVLFYVDSEKVAESDLSSEDKKKCASSHISFLFKSSKHKCKAMEEALKSASGTQSNVLRGVPFVRGGRPGFVSGLSYLELDNPDGNKQRYSSWAGSVTDLPQVIKQKLTPLYELVKEVPCASVRLYLKRALEEYLDEFDSCHCQPCQNGGMASVEGTQCQCHCKPNTFGVACEQGVLVGDHAGGIDGGWSCWSSWGPCAQGKKTRSRKCNNPPPSGGGKSCIGETSESRQCEDEDLEHLRLLEPHCFPLSLVPTEFCPSPPALKDGFVQNEETTFPVGKNIVYSCNEGYSLVGDPVARCGEDLQWTVGKMHCQKIACVLPTLMRGLQSHPQKPFYTVGEKVTFSCSSGMSLEGPSTFLCGSSLKWSPEMKNVQCVRKEAPLAKKVPECQLWEKLQNSKCVCKMPYECGSSLDVCARDERSKRILRLTVCKMHVLQCQGRNYTLSVGETCTLPGSAEKACGACPLWEKCDAQSSKCVCRAASECEEAGFRVCVEVNGREQTMTECEAGVLRCLGLSITVTSIRPCAPEAP", "length": 839, "header": "tr|F1SMJ1-1|F1SMJ1_PIG Isoform 1 of Complement component C7 OS=Sus scrofa OX=9823 GN=C7 PE=1 SV=4 CANONICAL=F1SMJ1-1" }, "isoforms": [ { "isoform_ac": "F1SMJ1-1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1/entry#F1SMJ1-1", "sequence": { "sequence": "AMSLVFLVGLIGEFQVFSSASSPVNCQWDSYAPWSECNGCTKTQTRRRPIAVYGQYGGHPCVGSMFETQSCEPTRGCPTEEGCGERFRCFSGQCISKSLVCNGDSDCEEDSADEDRCEDSESRPSCDLSKPPPNIELTGNGYNALTGQFRNRVLNTKSFGGQCRKVFSGDGRDFYRLSGNVLSYTFQVKVNNDFNYEFYNSTWSYAKHTSTEHTSSSKGRVFIFSSSSSSSSYYAKTYEILKKKSYQLLVVQNTVEVAQFINNNPEFLQLAESFWKELSYLPPLYDYSAYRLIDQYGTHYLQSGSLGGEYKVLFYVDSEKVAESDLSSEDKKKCASSHISFLFKSSKHKCKAMEEALKSASGTQSNVLRGVPFVRGGRPGFVSGLSYLELDNPDGNKQRYSSWAGSVTDLPQVIKQKLTPLYELVKEVPCASVRLYLKRALEEYLDEFDSCHCQPCQNGGMASVEGTQCQCHCKPNTFGVACEQGVLVGDHAGGIDGGWSCWSSWGPCAQGKKTRSRKCNNPPPSGGGKSCIGETSESRQCEDEDLEHLRLLEPHCFPLSLVPTEFCPSPPALKDGFVQNEETTFPVGKNIVYSCNEGYSLVGDPVARCGEDLQWTVGKMHCQKIACVLPTLMRGLQSHPQKPFYTVGEKVTFSCSSGMSLEGPSTFLCGSSLKWSPEMKNVQCVRKEAPLAKKVPECQLWEKLQNSKCVCKMPYECGSSLDVCARDERSKRILRLTVCKMHVLQCQGRNYTLSVGETCTLPGSAEKACGACPLWEKCDAQSSKCVCRAASECEEAGFRVCVEVNGREQTMTECEAGVLRCLGLSITVTSIRPCAPEAP", "length": 839, "header": "tr|F1SMJ1-1|F1SMJ1_PIG Isoform 1 of Complement component C7 OS=Sus scrofa OX=9823 GN=C7 PE=1 SV=4 CANONICAL=F1SMJ1-1" }, "locus": { "chromosome": "16", "start_pos": 25902704, "end_pos": 25846862, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018361.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018361.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017865.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017865.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-166665", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-166665", "resource": "Reactome", "description": "Terminal pathway of complement" }, { "id": "R-SSC-977606", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977606", "resource": "Reactome", "description": "Regulation of Complement cascade" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "pmid": "" }, { "name": "membrane attack complex", "id": "GO:0005579", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005579", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "pmid": "" }, { "name": "other organism cell membrane", "id": "GO:0044218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044218", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "killing of cells of another organism", "id": "GO:0031640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031640", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "pmid": "" }, { "name": "complement activation, classical pathway", "id": "GO:0006958", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006958", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "pmid": "" }, { "name": "complement activation", "id": "GO:0006956", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006956", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "pmid": "" }, { "name": "complement activation, alternative pathway", "id": "GO:0006957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006957", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "pmid": "" }, { "name": "complement activation, GZMK pathway", "id": "GO:0160257", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160257", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "wide pore channel activity", "id": "GO:0022829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022829", "evidence": [ { "database": "UniProtKB", "id": "F1SMJ1", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 200, "end_pos": 202, "annotation": "n_glycosylation_sequon" }, { "start_pos": 750, "end_pos": 752, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMJ1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 839, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMJ1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMJ1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" }, { "id": "PS51412", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51412" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MACPF", "eco_id": "ECO_0000259", "start_pos": 122, "end_pos": 452, "start_aa": "Ser", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SMJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMJ1" }, { "id": "PS50923", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50923" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sushi", "eco_id": "ECO_0000259", "start_pos": 565, "end_pos": 624, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 200, "end_pos": 202 }, { "start_pos": 750, "end_pos": 752 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMK4-1", "uniprot_ac": "F1SMK4", "uniprot_id": "F1SMK4_PIG", "mass": { "chemical_mass": 54876.0, "monoisotopic_mass": 54876.0 }, "refseq": {}, "gene_names": [ { "name": "HYAL4", "type": "recommended", "evidence": [ { "id": "F1SMK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ] } ], "protein_names": [ { "name": "Hyaluronidase", "type": "recommended", "evidence": [ { "id": "F1SMK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMK4/entry#names_and_taxonomy" } ] }, { "name": "3.2.1.35", "type": "synonym", "evidence": [ { "id": "F1SMK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMK4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HYAL4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4", "locus": { "chromosome": "18", "start_pos": 23625399, "end_pos": 23660792, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016603", "url": "https://www.ensembl.org/id/ENSSSCG00000016603" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016603", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016603", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524837", "url": "https://www.ncbi.nlm.nih.gov/gene/100524837", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013785", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013785", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018155", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018155", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524837", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524837", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CAKAFMK", "url": "https://omabrowser.org/oma/group/CAKAFMK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMK4", "url": "https://www.orthodb.org/?gene=F1SMK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11769", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11769", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11769:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11769:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2024101", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2024101", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2160916", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2160916", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003134772", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134772", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMK4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMKPLSEGQQRFCVVQPIHLTSWLLIFFILKSISSLKPARLPVYQRKPFIAAWNAPTDQCLIKYNVRLNLKMFQVIGSPLARARGQNVTIFYVNRLGYYPWYTAQGVPINGGLPQNISLQVHLEKADQDINYYIPSEDFSGLAVIDWEYWRPQWARNWNTKDVYRQKSRKLISELQENVSMADIEYLAKTTFEESAKAFMKETIELGIKSRPKGLWGYYLYPDCHNYNVYAPNYTGSCPEEEVLRNNELSWLWNSSAALYPSISVRKSLGDSENTLRFSQFRVHESMRISTVTSHGYALPVFVYTRLGYRDQPLFFLSKQDLISTIGESAALGAAGFVIWGDMNLTSSEGNCTKVKQFVSSDLGHYVVNVTRAAEVCSLHLCRNNGRCLRKVWKAPDYLHLNPASYRIEASEDGEFTVKGRASDRDLAVLVERFSCHCYQGYEGTDCREMKRADGCSGVSSFSGSLMTLCLLVSAGYQSIQL", "length": 482, "header": "tr|F1SMK4-1|F1SMK4_PIG Isoform 1 of Hyaluronidase OS=Sus scrofa OX=9823 GN=HYAL4 PE=3 SV=2 CANONICAL=F1SMK4-1" }, "isoforms": [ { "isoform_ac": "F1SMK4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMK4/entry#F1SMK4-1", "sequence": { "sequence": "MMKPLSEGQQRFCVVQPIHLTSWLLIFFILKSISSLKPARLPVYQRKPFIAAWNAPTDQCLIKYNVRLNLKMFQVIGSPLARARGQNVTIFYVNRLGYYPWYTAQGVPINGGLPQNISLQVHLEKADQDINYYIPSEDFSGLAVIDWEYWRPQWARNWNTKDVYRQKSRKLISELQENVSMADIEYLAKTTFEESAKAFMKETIELGIKSRPKGLWGYYLYPDCHNYNVYAPNYTGSCPEEEVLRNNELSWLWNSSAALYPSISVRKSLGDSENTLRFSQFRVHESMRISTVTSHGYALPVFVYTRLGYRDQPLFFLSKQDLISTIGESAALGAAGFVIWGDMNLTSSEGNCTKVKQFVSSDLGHYVVNVTRAAEVCSLHLCRNNGRCLRKVWKAPDYLHLNPASYRIEASEDGEFTVKGRASDRDLAVLVERFSCHCYQGYEGTDCREMKRADGCSGVSSFSGSLMTLCLLVSAGYQSIQL", "length": 482, "header": "tr|F1SMK4-1|F1SMK4_PIG Isoform 1 of Hyaluronidase OS=Sus scrofa OX=9823 GN=HYAL4 PE=3 SV=2 CANONICAL=F1SMK4-1" }, "locus": { "chromosome": "18", "start_pos": 23634677, "end_pos": 23626985, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018075.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018075.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017586.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017586.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "N-linked", "subtype": "other", "prediction_tool_list": [], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "N", "relation": "attached", "comment": "N-linked (GlcNAc...) asparagine", "icn3d_view": {}, "start_pos": 369, "start_aa": "Asn", "end_pos": 369, "end_aa": "Asn", "residue": "Asn", "site_lbl": "Asn369", "evidence": [ { "id": "F1SMK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMK4#ptm_processing" }, { "id": "PIRSR038193-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR038193-2" } ], "filter_code": "00100000000000000000.00010000000000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524837", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524837", "resource": "KEGG Pathway" }, { "id": "R-SSC-2024101", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2024101", "resource": "Reactome", "description": "CS/DS degradation" }, { "id": "R-SSC-2160916", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2160916", "resource": "Reactome", "description": "Hyaluronan degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MT53-1", "protein_name": "Hyaluronidase", "gene_name": "LOC100758272", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKLLSEGQLRLCVVQPVRLTSGLLIFFILKSISSLKPARLPVYQRKPFIAAWNAPTDLCLIKYNLTMNLKIFQMIGSPRLKDGEQNVTIFYANKLGYYPLYTSEGVPINGGLPQNTSLQVHLEKAAQDISYYIPSKNFSGLAVIDWEYWRPQWARNWDTKDIYRQKSRTLISNMEKNISAVDVEYLARATFEKSARAFMEETIKLGIRSRPKGLWGYYLYPDCHNYNFYPTNYTGSCPKEEVLRNDELSWLWNSSTALYPAVSIRKSFKDSEHTLHFSQYRVYESLRISTMTTHDYALPVFIYTRLGYREKPLLFLSKQDLISTIGESAALGAAGIVIWGDMNLTSSEENCTKVNHFVNSDFGNYIINVSTAAEVCSHHLCKNNGRCIRKTWNAPHYLHLNPASYHIEASEDGEFIVKGKASEEDLAVMAENFLCHCYQGYEGADCREMKEADSCSGVSLFSSSVITPCLLVLAGYQSVQL", "length": 481 }, "evidence": [ { "id": "F1SMK4", "url": "https://omabrowser.org/oma/group/F1SMK4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1B8K4-1", "protein_name": "Hyaluronidase", "gene_name": "HYAL4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKPLSEGQLRFYVVQAIHLISWLFILFILKSISSLKPARLPVYQRKPFIAAWNAPTDQCLIKYNIRLNLKMFQVIGSPLARARGQNVTIFYVNRLGYYPWYTPQGVPINGGLPQNISLQVHLEKADQDIRYYIPSEDFSGLAVIDWEYWRPQWARNWNTKDIYRQKSRKLISETQENASAADIEYLAKATFEESAKAFMKETIELGIKSRPKGLWGYYLYPDCHNYNVYGPNYTGSCPEEEVLRNNELSWLWNISAALYPSIGVRRSLGDSENVLRFSQFRVHESMRISIMTSRDHALPVFVYTRLGYRDQPLLFLSKQDLISTIGESAALGAAGIVIWGDMNLTSSKGNCTKVKQFVSSDLGSYIVNVTRAAEVCSLHVCRNNGRCIRKVWKMPDYLHLNPASYHIEASEDGEFTVKGRASDTDLAVLAERFSCHCYQGYQGADCREMKTADGCSGPSSFSGSLLTLCLLVSTGYQSRQW", "length": 481 }, "evidence": [ { "id": "F1SMK4", "url": "https://omabrowser.org/oma/group/F1SMK4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3V6V8-1", "protein_name": "Hyaluronidase", "gene_name": "Hyal4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQLLSEGQLRRCVVQPVHLTSGLLIFFILKSISSLKPARLPVYQRKPFIAAWNAPTDLCLIKYNLAVNLKVFQMVGSPRLKDRRQNVVIFYANKLGSYPWYTSEGVPINGGLPQNTSLQVHLEKAYQDINYYIPSENFSGLAVIDWEYWRPQWARNWNTKDIYRQKSRTLISDMKENISTADIEYLAKATFEKSAKAFMEETIKLGIKSRPKGFWGYYLYPDCHNYNFYATNYTGSCPEEEVLRNNDLSWLWNSSTALYPAVSIRKSFADSENTLHFSQFRVRESLRISTMTSHDYALPVFVYTRLGYKEEPLLFLSKQDLISTIGESAALGAAGIVVWGDMNLTSSAENCTKVNRFVNSDFGSYVINVTTAAEVCSRHLCKNNGRCARKTWKAAHYLHLNPASYHIEASADREFVVKGRASDADLAAMAENFLCHCYEGYEGADCRDMTEASGPSGVSVSSSSVITLCLIALAGHQSIQL", "length": 481 }, "evidence": [ { "id": "F1SMK4", "url": "https://omabrowser.org/oma/group/F1SMK4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q05A56-1", "protein_name": "Hyaluronidase-4", "gene_name": "Hyal4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQLLPEGQLRLCVFQPVHLTSGLLILFILKSISSLKPARLPVYQRKPFIAAWNAPTDLCLIKYNLTLNLKVFQMVGSPRLKDRGQNVVIFYANRLGYYPWYTSEGVPINGGLPQNTSLQVHLKKAAQDINYYIPSENFSGLAVIDWEYWRPQWARNWNTKDIYRQKSRTLISDMKENISAADIEYSAKATFEKSAKAFMEETIKLGSKSRPKGLWGYYLYPDCHNYNVYATNYTGSCPEEEVLRNNDLSWLWNSSTALYPAVSIRKSFADSENTLHFSRFRVRESLRISTMTSQDYALPVFVYTQLGYKEEPLLFLSKQDLISTIGESAALGAAGIVVWGDMNLTSSEENCTKVNRFVNSDFGSYIINVTRAAEVCSRHLCKNNGRCVRKTWKAAHYLHLNPASYHIEASEDGEFIVRGRASDTDLAVMAENFLCHCYEGYEGADCREMTEASGPSGLSLSSSSVITLCLLVLAGYQSIQL", "length": 481 }, "evidence": [ { "id": "F1SMK4", "url": "https://omabrowser.org/oma/group/F1SMK4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q2M3T9-1", "protein_name": "Hyaluronidase-4", "gene_name": "HYAL4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKVLSEGQLKLCVVQPVHLTSWLLIFFILKSISCLKPARLPIYQRKPFIAAWNAPTDQCLIKYNLRLNLKMFPVIGSPLAKARGQNVTIFYVNRLGYYPWYTSQGVPINGGLPQNISLQVHLEKADQDINYYIPAEDFSGLAVIDWEYWRPQWARNWNSKDVYRQKSRKLISDMGKNVSATDIEYLAKVTFEESAKAFMKETIKLGIKSRPKGLWGYYLYPDCHNYNVYAPNYSGSCPEDEVLRNNELSWLWNSSAALYPSIGVWKSLGDSENILRFSKFRVHESMRISTMTSHDYALPVFVYTRLGYRDEPLFFLSKQDLVSTIGESAALGAAGIVIWGDMNLTASKANCTKVKQFVSSDLGSYIANVTRAAEVCSLHLCRNNGRCIRKMWNAPSYLHLNPASYHIEASEDGEFTVKGKASDTDLAVMADTFSCHCYQGYEGADCREIKTADGCSGVSPSPGSLMTLCLLLLASYRSIQL", "length": 481 }, "evidence": [ { "id": "F1SMK4", "url": "https://omabrowser.org/oma/group/F1SMK4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "X1WD16-1", "protein_name": "Hyaluronidase", "gene_name": "hyal4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPGVPCGALQHHTVPVACAIICSWLLILVHSVLCQKPAKLPLVGRKPFLAAWNAPLDMCTLKYNINVSLDIFHISGSPRAVHTGQNVTIFYANRLGYYPFYNEQGVPINGGLPQNTSLEAHLRKARKDIAHFIPSEDFRGLAVIDWEFWRPQWDRNWHKKDIYRKNSRELIAQAYLNVTEEQVEELARLRFEKSAMEYMQSTLQLGTQTRPHGLWGFYLYPDCHNYNIHELNYSGTCPQRESERNDQLFWLWNSSTALFPALAIRKGHTDSIRNLHFSQNRVLESLRLASLTSLPYELPTYVYTRLGYRDEAMAFLTQKDLIHTIGESAALGAAGFVIWGDLNLTSSRHNCSKVKAFMNHKLGQYITNVTRAAEVCSDFLCQSNGRCVRRDPQAPHYLHLSRSSYRILSNRNGTFTVTGWHSQHELQLLADRFRCHCYQGYEGDRCDSIEPEETEEDNMIKENVDGEDQKKLEDHEHMRDTAVPLQNGLILYTLLLLLNFGFI", "length": 503 }, "evidence": [ { "id": "F1SMK4", "url": "https://omabrowser.org/oma/group/F1SMK4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "pmid": "" }, { "name": "chondroitin sulfate proteoglycan catabolic process", "id": "GO:0030207", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030207", "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "pmid": "" }, { "name": "hyaluronan catabolic process", "id": "GO:0030214", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030214", "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "hyalurononglucosaminidase activity", "id": "GO:0004415", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004415", "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "pmid": "" }, { "name": "chondroitin hydrolase activity", "id": "GO:0052757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052757", "evidence": [ { "database": "UniProtKB", "id": "F1SMK4", "url": "https://www.uniprot.org/uniprotkb/F1SMK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1793209", "name": "HYAL1-4 hydrolyze chondroitin chains", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1793209", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1793209" } ] }, { "id": "R-SSC-2160874", "name": "HYAL1 hydrolyses (HA)50", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [ "R-ALL-2160864" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2160874", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2160874" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-2160864", "participant_name": "(HA)50 [lysosomal lumen]", "crossref": [ { "id": "64024", "database": "ChEBI", "url": "" }, { "id": "G35674CY", "database": "GlyTouCan", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [ 369 ], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 116, "end_pos": 118 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 233, "end_pos": 235 }, { "start_pos": 254, "end_pos": 256 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 351, "end_pos": 353 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 87, "end_pos": 89 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 1 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_n_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SML5-1", "uniprot_ac": "F1SML5", "uniprot_id": "F1SML5_PIG", "mass": { "chemical_mass": 72980.0, "monoisotopic_mass": 72980.0 }, "refseq": { "ac": "XP_020934293", "name": "leucine-rich repeat-containing protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934293" }, "gene_names": [ { "name": "LRRC4", "type": "recommended", "evidence": [ { "id": "F1SML5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ] }, { "name": "LRRC4", "type": "synonym", "evidence": [ { "id": "XP_020934293", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934293" } ] } ], "protein_names": [ { "name": "Leucine rich repeat containing 4", "type": "synonym", "evidence": [ { "id": "F1SML5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SML5/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 4", "type": "synonym", "evidence": [ { "id": "XP_020934293", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934293" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC4", "url": "https://www.uniprot.org/uniprotkb/F1SML5", "locus": { "chromosome": "18", "start_pos": 20322848, "end_pos": 20319701, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016589", "url": "https://www.ensembl.org/id/ENSSSCG00000016589" } ] } } ], "crossref": [ { "id": "F1SML5", "url": "https://alphafold.ebi.ac.uk/entry/F1SML5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016589", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016589", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521592", "url": "https://www.ncbi.nlm.nih.gov/gene/100521592", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521592", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521592", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WTDNNVG", "url": "https://omabrowser.org/oma/group/WTDNNVG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SML5", "url": "https://www.orthodb.org/?gene=F1SML5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934293", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934293", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SML5-1", "url": "https://www.uniprot.org/uniprotkb/F1SML5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLLWQVTVHHTWNAVLLPVVYLAAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPLHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAELNTSNYSFFTTVTVETTEISPEDTTRKYKPVPTTSTGYQPAYTTSTTVLIQTTRVPKQVAVTATDTNDKMQTSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTVAAARTVEIIQVDEDLPAAAAAAAAAAASAAATAAPAGVSGEGAVVLPTIHDHINYNTYKPAHGAHWTENSLGNSLHPTVTTISEPYIIQTHTKDKVQETQI", "length": 660, "header": "tr|F1SML5-1|F1SML5_PIG Isoform 1 of Leucine rich repeat containing 4 OS=Sus scrofa OX=9823 GN=LRRC4 PE=4 SV=3 CANONICAL=F1SML5-1" }, "isoforms": [ { "isoform_ac": "F1SML5-1", "url": "https://www.uniprot.org/uniprotkb/F1SML5/entry#F1SML5-1", "sequence": { "sequence": "MKLLWQVTVHHTWNAVLLPVVYLAAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPLHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAELNTSNYSFFTTVTVETTEISPEDTTRKYKPVPTTSTGYQPAYTTSTTVLIQTTRVPKQVAVTATDTNDKMQTSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTVAAARTVEIIQVDEDLPAAAAAAAAAAASAAATAAPAGVSGEGAVVLPTIHDHINYNTYKPAHGAHWTENSLGNSLHPTVTTISEPYIIQTHTKDKVQETQI", "length": 660, "header": "tr|F1SML5-1|F1SML5_PIG Isoform 1 of Leucine rich repeat containing 4 OS=Sus scrofa OX=9823 GN=LRRC4 PE=4 SV=3 CANONICAL=F1SML5-1" }, "locus": { "chromosome": "18", "start_pos": 20322330, "end_pos": 20320351, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018061.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018061.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017573.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017573.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521592", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521592", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q45R42-1", "protein_name": "Leucine-rich repeat-containing protein 4", "gene_name": "Lrrc4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLLWQVTVHHTWNAVLLPVVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNAIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEDRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSRVLLIDTGVYTCMVTNVAGNSNASAYLNVSSAELNTPNFSFFTTVTVETTEISPEDITRKYKPVPTTSTGYQPAYTTSTTVLIQTTRVPKQVPVPSTDTTDKMQTSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTVTAARTVEIIQVDEDIPAAASAAATAAPSGVSGEGAVVLPTIHDHINYNTYKPAHGAHWTENSLGNSLHPTVTTISEPYIIQTHTKDKVQETQI", "length": 652 }, "evidence": [ { "id": "F1SML5", "url": "https://omabrowser.org/oma/group/F1SML5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99PH1-1", "protein_name": "Leucine-rich repeat-containing protein 4", "gene_name": "Lrrc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLLWQVTVHHTWNAVLLPVVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQAAFQCSAPFIMDAPRDLNISEDRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSRVLLIDTGVYTCMVTNVAGNSNASAYLNVSSAELNTPNFSFFTTVTVETTEISPEDITRKYKPVPTTSTGYQPAYTTSTTVLIQTTRVPKQVPVPSTDTTDKMQTSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTVTAARTVEIIQVDEDIPAAAPAAATAAPSGVSGEGAVVLPTIHDHINYNTYKPAHGAHWTENSLGNSLHPTVTTISEPYIIQTHTKDKVQETQI", "length": 652 }, "evidence": [ { "id": "F1SML5", "url": "https://omabrowser.org/oma/group/F1SML5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HBW1-1", "protein_name": "Leucine-rich repeat-containing protein 4", "gene_name": "LRRC4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLLWQVTVHHHTWNAILLPFVYLTAQVWILCAAIAAAASAGPQNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAELNTSNYSFFTTVTVETTEISPEDTTRKYKPVPTTSTGYQPAYTTSTTVLIQTTRVPKQVAVPATDTTDKMQTSLDEVMKTTKIIIGCFVAVTLLAAAMLIVFYKLRKRHQQRSTVTAARTVEIIQVDEDIPAATSAAATAAPSGVSGEGAVVLPTIHDHINYNTYKPAHGAHWTENSLGNSLHPTVTTISEPYIIQTHTKDKVQETQI", "length": 653 }, "evidence": [ { "id": "F1SML5", "url": "https://omabrowser.org/oma/group/F1SML5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" }, { "name": "dendritic spine", "id": "GO:0043197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043197", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" }, { "name": "excitatory synapse", "id": "GO:0060076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060076", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" }, { "name": "postsynaptic density membrane", "id": "GO:0098839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098839", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" }, { "name": "Schaffer collateral - CA1 synapse", "id": "GO:0098685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098685", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "excitatory synapse assembly", "id": "GO:1904861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904861", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" }, { "name": "modulation of chemical synaptic transmission", "id": "GO:0050804", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050804", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" }, { "name": "synaptic membrane adhesion", "id": "GO:0099560", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099560", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" }, { "name": "postsynaptic density protein 95 clustering", "id": "GO:0097119", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097119", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cell-cell adhesion mediator activity", "id": "GO:0098632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098632", "evidence": [ { "database": "UniProtKB", "id": "F1SML5", "url": "https://www.uniprot.org/uniprotkb/F1SML5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" }, { "start_pos": 439, "end_pos": 441, "annotation": "n_glycosylation_sequon" }, { "start_pos": 446, "end_pos": 448, "annotation": "n_glycosylation_sequon" }, { "start_pos": 449, "end_pos": 451, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SML5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 660, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SML5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SML5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SML5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SML5" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 352, "end_pos": 441, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 212, "end_pos": 214 }, { "start_pos": 276, "end_pos": 278 }, { "start_pos": 321, "end_pos": 323 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 433, "end_pos": 435 }, { "start_pos": 439, "end_pos": 441 }, { "start_pos": 446, "end_pos": 448 }, { "start_pos": 449, "end_pos": 451 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SML8-1", "uniprot_ac": "F1SML8", "uniprot_id": "F1SML8_PIG", "mass": { "chemical_mass": 23880.0, "monoisotopic_mass": 23880.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "40S ribosomal protein S6", "type": "recommended", "evidence": [ { "id": "F1SML8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SML8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SML8", "url": "https://www.uniprot.org/uniprotkb/F1SML8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SML8", "locus": {} } ], "crossref": [ { "id": "F1SML8", "url": "https://alphafold.ebi.ac.uk/entry/F1SML8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005209", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005209", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014401", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014401", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11502", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11502", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01092", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01092", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SML8", "url": "https://www.uniprot.org/uniprotkb/F1SML8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SML8-1", "url": "https://www.uniprot.org/uniprotkb/F1SML8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLNISFPANGCQKLIEVDNEQDLLAADALGEEWKMDSCYRPRRTGERKCKSVWGCTVDASLSVLHLVTIKKRGEGREKDIPGLTDITIPCHLGPKRVSRIHKLFSLSKEDNVCQYVVRKSLNKEGKKPRTKASKIQDLITPHVLQHKRRRIALMKKYAKKNKEEAAEYAKLLAKRMKEAKEKCQEQIAKSQRLSSLRASTSMFESSQK", "length": 209, "header": "tr|F1SML8-1|F1SML8_PIG Isoform 1 of 40S ribosomal protein S6 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SML8-1" }, "isoforms": [ { "isoform_ac": "F1SML8-1", "url": "https://www.uniprot.org/uniprotkb/F1SML8/entry#F1SML8-1", "sequence": { "sequence": "MKLNISFPANGCQKLIEVDNEQDLLAADALGEEWKMDSCYRPRRTGERKCKSVWGCTVDASLSVLHLVTIKKRGEGREKDIPGLTDITIPCHLGPKRVSRIHKLFSLSKEDNVCQYVVRKSLNKEGKKPRTKASKIQDLITPHVLQHKRRRIALMKKYAKKNKEEAAEYAKLLAKRMKEAKEKCQEQIAKSQRLSSLRASTSMFESSQK", "length": 209, "header": "tr|F1SML8-1|F1SML8_PIG Isoform 1 of 40S ribosomal protein S6 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SML8-1" }, "locus": { "chromosome": "1", "start_pos": 216527318, "end_pos": 216526337, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005741.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005741.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005599.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005599.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SML8", "url": "https://www.uniprot.org/uniprotkb/F1SML8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F1SML8", "url": "https://www.uniprot.org/uniprotkb/F1SML8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "F1SML8", "url": "https://www.uniprot.org/uniprotkb/F1SML8" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F1SML8", "url": "https://www.uniprot.org/uniprotkb/F1SML8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1SML8", "url": "https://www.uniprot.org/uniprotkb/F1SML8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SML8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 209, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SML8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SML8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMQ2-1", "uniprot_ac": "F1SMQ2", "uniprot_id": "F1SMQ2_PIG", "mass": { "chemical_mass": 31623.0, "monoisotopic_mass": 31623.0 }, "refseq": { "ac": "XP_003134729", "name": "tetraspanin-33 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134729" }, "gene_names": [ { "name": "TSPAN33", "type": "recommended", "evidence": [ { "id": "F1SMQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ] }, { "name": "TSPAN33", "type": "synonym", "evidence": [ { "id": "XP_003134729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134729" } ] } ], "protein_names": [ { "name": "Tetraspanin", "type": "recommended", "evidence": [ { "id": "F1SMQ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2/entry#names_and_taxonomy" } ] }, { "name": "tetraspanin-33 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003134729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134729" } ] } ], "function": [ { "annotation": "Part of TspanC8 subgroup, composed of 6 members that interact with the transmembrane metalloprotease ADAM10. This interaction is required for ADAM10 exit from the endoplasmic reticulum and for enzymatic maturation and trafficking to the cell surface as well as substrate specificity. Different TspanC8/ADAM10 complexes have distinct substrates. Plays an important role in normal erythropoiesis. It has a role in the differentiation of erythroid progenitors. Negatively regulates ligand-induced Notch activity probably by regulating ADAM10 activity. Mediates docking of ADAM10 to zonula adherens by interacting with ADAM10 and, in a PDZD11-dependent manner, with the zonula adherens protein PLEKHA7.", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2#function" }, { "database": "UniProtKB", "id": "ARBA00054973", "url": "https://www.uniprot.org/uniprotkb/ARBA00054973#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TSPAN33", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2", "locus": { "chromosome": "18", "start_pos": 19493613, "end_pos": 19514361, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016570", "url": "https://www.ensembl.org/id/ENSSSCG00000016570" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016570", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016570", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03158", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03158", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515287", "url": "https://www.ncbi.nlm.nih.gov/gene/100515287", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515287", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515287", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IQTYRED", "url": "https://omabrowser.org/oma/group/IQTYRED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMQ2", "url": "https://www.orthodb.org/?gene=F1SMQ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19282:SF154", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19282:SF154", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134729", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134729", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMQ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARRPRAPAAYGEDFSFVSPLVKYLLFFFNMLFWVISMVMVAVGIYARLMKHAEAALACLAVDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTIVFLLQLAAGVLGFVFSDKARGKVNEIINNAIVHYRDDLDLQNLIDFGQKKFGCCGGISYKDWSLNMYFNCSEDNPSRERCSVPYSCCLPVPNQAVINTMCGQGMQALDYLEASKIIYTNGCIDRLVNWIHSNLFVLGGVALGLAIPQLVGILLSMILMSQIKDQIKLQLYNQQHRADPWY", "length": 283, "header": "tr|F1SMQ2-1|F1SMQ2_PIG Isoform 1 of Tetraspanin OS=Sus scrofa OX=9823 GN=TSPAN33 PE=3 SV=1 CANONICAL=F1SMQ2-1" }, "isoforms": [ { "isoform_ac": "F1SMQ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2/entry#F1SMQ2-1", "sequence": { "sequence": "MARRPRAPAAYGEDFSFVSPLVKYLLFFFNMLFWVISMVMVAVGIYARLMKHAEAALACLAVDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTIVFLLQLAAGVLGFVFSDKARGKVNEIINNAIVHYRDDLDLQNLIDFGQKKFGCCGGISYKDWSLNMYFNCSEDNPSRERCSVPYSCCLPVPNQAVINTMCGQGMQALDYLEASKIIYTNGCIDRLVNWIHSNLFVLGGVALGLAIPQLVGILLSMILMSQIKDQIKLQLYNQQHRADPWY", "length": 283, "header": "tr|F1SMQ2-1|F1SMQ2_PIG Isoform 1 of Tetraspanin OS=Sus scrofa OX=9823 GN=TSPAN33 PE=3 SV=1 CANONICAL=F1SMQ2-1" }, "locus": { "chromosome": "18", "start_pos": 19514112, "end_pos": 19494588, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018040.3", "url": "https://www.ensembl.org/id/ENSSSCT00000018040.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017554.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017554.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515287", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515287", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3Z967-1", "protein_name": "Tetraspanin", "gene_name": "Tspan33", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARRPGVPAAYGEEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACLAVDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTIVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKKFSCCGGISYRDWSQNMYFNCSEDNPSRERCSVPYSCCLPTPNQAVINTMCGQGMQALDYLEASKVIYTNGCIDKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQVLVNQIKDQIKLQLYNQQHRADPWY", "length": 283 }, "evidence": [ { "id": "F1SMQ2", "url": "https://omabrowser.org/oma/group/F1SMQ2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MWA6-1", "protein_name": "Tetraspanin", "gene_name": "TSPAN33", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARRPGAPAAYGEDFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHEEAALACLAVDPAILLIVVGILMFLLTFCGCIGSLRENICLLQTFSLCLTVVFLLQLAAGVLGFVFSDKVRGKVSEIINNAIVHYRDDLDLQNLIDFGQKEFSCCGGISYKDWSLNMYFNCSEDNPSRERCSVPYSCCLPTPNQAVINTMCGQGMQALDYLEASKVIYTNGCIDRLVNWIHSNLFVLGGVALGLAIPQLVGILLSMILVSQIKDQIKLQLYNQQHRADPWY", "length": 283 }, "evidence": [ { "id": "F1SMQ2", "url": "https://omabrowser.org/oma/group/F1SMQ2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RH71-1", "protein_name": "Tetraspanin-33", "gene_name": "tspan33", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGNAKRATQNDEDYTFVSPVVKYLLFFFNMIFWIISLVLISIGVYSRIVKHETALACLTVDPALILMVVGILMFFITFCGCVGSLRENICLLQTFCIFLTIMFLLQLLAGVLGFVFSDKARGKVTDMFDNAIKHYRDDLDLQNLIDYGQKQFNCCGGISFMDWSKNMYFNCSDDNPSRERCSVPFSCCLHAKEETIINTMCGHGMQALNYLAASAFINTNGCIDILVNWIHSNLFLLGGIALGLTIPQLVGILLSQVLINQIQDQIKLQNYNQQHRSDPWS", "length": 281 }, "evidence": [ { "id": "F1SMQ2", "url": "https://omabrowser.org/oma/group/F1SMQ2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q86UF1-1", "protein_name": "Tetraspanin-33", "gene_name": "TSPAN33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARRPRAPAASGEEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACLAVDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTAVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKKFSCCGGISYKDWSQNMYFNCSEDNPSRERCSVPYSCCLPTPDQAVINTMCGQGMQAFDYLEASKVIYTNGCIDKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQILVNQIKDQIKLQLYNQQHRADPWY", "length": 283 }, "evidence": [ { "id": "F1SMQ2", "url": "https://omabrowser.org/oma/group/F1SMQ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R3S2-1", "protein_name": "Tetraspanin-33", "gene_name": "Tspan33", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARRPGVPAAYGDEFSFVSPLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACLAVDPAILLIVVGVLMFLLTFCGCIGSLRENICLLQTFSLCLTIVFLLQLAAGILGFVFSDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKKFSCCGGISYRDWSQNMYFNCSEDNPSRERCSVPYSCCLPTPNQAVINTMCGQGMQALDYLEASKVIYTNGCIDKLVNWIHSNLFLLGGVALGLAIPQLVGILLSQVLVNQIKDQIKLQLYNQQHRADPWY", "length": 283 }, "evidence": [ { "id": "F1SMQ2", "url": "https://omabrowser.org/oma/group/F1SMQ2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W4X6-1", "protein_name": "Tetraspanin", "gene_name": "Tsp3A", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSNYRYQGAGLGGVGMAGGRGYSGIEVHEVMHPHHFTYVSQCVKYMIFLLNFVFWLFGGLLLGIGVYAFRDKWEDANGSVRLENFYDVFLNISLVMILAGTVIFLVSFSGCVGALRENTFLLKFYSMCLLLFFLLEMAIAIVCFVCPQYMNTFLEKQFTHKIIHSYRDDPDLQNFIDFAQQEFKCCGLSNSGYQDWSKNEYFNCSSPSVEKCGVPYSCCINATDISSGLVNIMCGYGVQNAPVPEATKLIWTSGCIEIVRVWAEHNLYVIAGNALGIALIQLLVIYLAKTLEGQIELQKSRWLA", "length": 304 }, "evidence": [ { "id": "F1SMQ2", "url": "https://omabrowser.org/oma/group/F1SMQ2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" }, { "name": "tetraspanin-enriched microdomain", "id": "GO:0097197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097197", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" }, { "name": "pore complex", "id": "GO:0046930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046930", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein localization to plasma membrane", "id": "GO:0072659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072659", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" }, { "name": "pore complex assembly", "id": "GO:0046931", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046931", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" }, { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "F1SMQ2", "url": "https://www.uniprot.org/uniprotkb/F1SMQ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMR6-1", "uniprot_ac": "F1SMR6", "uniprot_id": "F1SMR6_PIG", "mass": { "chemical_mass": 55054.0, "monoisotopic_mass": 55054.0 }, "refseq": { "ac": "XP_020934386", "name": "nuclear-interacting partner of ALK isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934386" }, "gene_names": [ { "name": "ZC3HC1", "type": "recommended", "evidence": [ { "id": "F1SMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" } ] }, { "name": "ZC3HC1", "type": "synonym", "evidence": [ { "id": "XP_020934386", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934386" } ] } ], "protein_names": [ { "name": "Zinc finger C3HC-type containing 1", "type": "synonym", "evidence": [ { "id": "F1SMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMR6/entry#names_and_taxonomy" } ] }, { "name": "nuclear-interacting partner of ALK isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020934386", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934386" } ] } ], "function": [ { "annotation": "Required for proper positioning of a substantial amount of TPR at the nuclear basket (NB) through interaction with TPR.", "evidence": [ { "database": "UniProtKB", "id": "F1SMR6", "url": "https://www.uniprot.org/uniprotkb/F1SMR6#function" }, { "database": "UniProtKB", "id": "ARBA00044931", "url": "https://www.uniprot.org/uniprotkb/ARBA00044931#function" }, { "database": "UniProtKB", "id": "I3LTG5", "url": "https://www.uniprot.org/uniprotkb/I3LTG5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMR6", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZC3HC1", "url": "https://www.uniprot.org/uniprotkb/F1SMR6", "locus": { "chromosome": "18", "start_pos": 18761718, "end_pos": 18740845, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016565", "url": "https://www.ensembl.org/id/ENSSSCG00000016565" } ] } } ], "crossref": [ { "id": "F1SMR6", "url": "https://alphafold.ebi.ac.uk/entry/F1SMR6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016565", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016565", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516654", "url": "https://www.ncbi.nlm.nih.gov/gene/100516654", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012935", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012935", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516654", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516654", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EWCPWIS", "url": "https://omabrowser.org/oma/group/EWCPWIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMR6", "url": "https://www.orthodb.org/?gene=F1SMR6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15835", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15835", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15835:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15835:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07967", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07967", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08600", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08600", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934386", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934386", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMR6", "url": "https://www.uniprot.org/uniprotkb/F1SMR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SMR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LTG5", "url": "https://www.uniprot.org/uniprotkb/I3LTG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LTG5-1", "url": "https://www.uniprot.org/uniprotkb/I3LTG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPSEGPAFAAGVEKNWSAIVRSPEGTPQKVRQLIDEGIAPEEGSAEAKDTSATFQPVNGSPQAEEPPLESTSKEAFFSRVETFSSLKWAGKPPELSPLVCAKYGWVTVECDMLKCSSCQAFLCATLQPAFDFDRYKERCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPGVLVSEFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKITLLLHLLEDELDHRTDERKTAIKLGSDIQVHVTACILSVCGWACSSALEPVQLSLITCSQCMRKVGLWGFQQMESLADLDASFGLTSSPVPGSEGRPERFPLVPESPRRMMTRSQDATFSPGSEQAERSPGPIVTRTRSWDSSSPIDRPEPEAASPTTRTRPVTRSMGTGDTAGLEVPSSPLRRAKRARLCSSSSSDASPRGFFDPTSQHRDWCPWVNITLGKESKESGGAEVDASTPAEPGWRAVLNSLLAHKQSNQPAETDSMSLSEKSRKVFRIFRQWESLCSS", "length": 501, "header": "tr|F1SMR6-1|F1SMR6_PIG Isoform 1 of Zinc finger C3HC-type containing 1 OS=Sus scrofa OX=9823 GN=ZC3HC1 PE=1 SV=3 CANONICAL=F1SMR6-1" }, "isoforms": [ { "isoform_ac": "F1SMR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SMR6/entry#F1SMR6-1", "sequence": { "sequence": "MAAPSEGPAFAAGVEKNWSAIVRSPEGTPQKVRQLIDEGIAPEEGSAEAKDTSATFQPVNGSPQAEEPPLESTSKEAFFSRVETFSSLKWAGKPPELSPLVCAKYGWVTVECDMLKCSSCQAFLCATLQPAFDFDRYKERCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPGVLVSEFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKITLLLHLLEDELDHRTDERKTAIKLGSDIQVHVTACILSVCGWACSSALEPVQLSLITCSQCMRKVGLWGFQQMESLADLDASFGLTSSPVPGSEGRPERFPLVPESPRRMMTRSQDATFSPGSEQAERSPGPIVTRTRSWDSSSPIDRPEPEAASPTTRTRPVTRSMGTGDTAGLEVPSSPLRRAKRARLCSSSSSDASPRGFFDPTSQHRDWCPWVNITLGKESKESGGAEVDASTPAEPGWRAVLNSLLAHKQSNQPAETDSMSLSEKSRKVFRIFRQWESLCSS", "length": 501, "header": "tr|F1SMR6-1|F1SMR6_PIG Isoform 1 of Zinc finger C3HC-type containing 1 OS=Sus scrofa OX=9823 GN=ZC3HC1 PE=1 SV=3 CANONICAL=F1SMR6-1" }, "locus": { "chromosome": "18", "start_pos": 18761120, "end_pos": 18740880, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018035.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018035.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017549.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017549.3" } ] } }, { "isoform_ac": "I3LTG5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMR6/entry#I3LTG5-1", "sequence": { "sequence": "MAAPSEGPAFAAGVEKNWSAIVRSPEGTPQKVRQLIDEGIAPEEGSAEAKDTSATFQPVNGSPQAEEPPLESTSKEAFFSRVETFSSLKWAGKPPELSPLVCAKYGWVTVECDMLKCSSCQAFLCATLQPAFDFDRYKERCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPGVLVSEFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKITLLLHLLEDELDHRTDERKTAIKLGSDIQVHVTACILSVCGWACSSALEPVQLSLITCSQCMRKVGLWGFQQMESLADLDASFGLTSSPVPGSEGRPERFPLVPESPRRMMTRSQDATFSPGSEQDASPRGFFDPTSQHRDWCPWVNITLGKESKESGGAEVDASTPAEPGWRAVLNSLLAHKQSNQPAETDSMSLSEKSRKVFRIFRQWESLCSS", "length": 430, "header": "tr|I3LTG5-1|F1SMR6_PIG Computationally mapped isoform of Zinc finger C3HC-type containing 1 OS=Sus scrofa OX=9823 GN=ZC3HC1 PE=1 SV=2 CANONICAL=F1SMR6-1" }, "locus": { "chromosome": "18", "start_pos": 18761120, "end_pos": 18740880, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028385.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028385.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000027411.2", "url": "https://www.ensembl.org/id/ENSSSCP00000027411.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 451, "start_aa": "Thr", "end_pos": 451, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr451", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LTG5", "url": "https://www.uniprot.org/uniprotkb/I3LTG5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516654", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516654", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XQU1-1", "protein_name": "Zinc finger C3HC-type containing 1", "gene_name": "ZC3HC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPSAEEAGGGRSRPPAVTPQQIRDLIDGGIASEGSGPEGKGTSDWSESANGSLQIDALSSESTSKEAYFSRVETFTPLKWAGKPHELSPLVCAKYGWTNVECDMLKCSSCQAFLCVSLQLTFDFNKYKERCVELKKSLCTAHEKFCFWPDSPCPDRFALLLVDEPRALLQDFLERFQNLCQLELQLPSLRAEDMKNMSLTEEKISLLLQLIKEELEHRTEGEKPPMKFASESLQVHIPACVLALCGWTCSAVSGSVLSVITCSRCMRKVGLWGFHQLESAGLELDSWSPSTASTASGERGPPVPTSPRRMLTRSQDTNSPGSEQEKSPSPSISRLKGSDPPSSPVERGGELEATSPTQRNRPITRSMGQGDNVEVPSSPLRRAKRPRLCSSSSSDTSPRSFFDPSSQHRDWCPWVNAVEGGETPEDPEKEPAKGEPGWQVVLSTLLASRKCDRVPETEPVSLSVKSCKVFRIFRQWESINPS", "length": 484 }, "evidence": [ { "id": "F1SMR6", "url": "https://omabrowser.org/oma/group/F1SMR6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q54PS8-1", "protein_name": "C3HC-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDERIKKALSDLDNATVLNQLPILSNDLTTTCGSSSGSSSNDNNNNNNKNNNQYSTLNLIDESNNSTSNSTTSPSLLITSYRPWSNTDYYNRVRTYTISNWFAKPCEIDPLQCSRFGWINCEADMLECETCKKRLYYKVPSTFSQSLVNKRINDFSISLQSTGHRDNCPWKDNGCPSFFSRLLDIPFQTQLEAYIKRSQNIYNNLTTLPMLSSDFYQQWVNKQNLMEPPITSRTNNILNIIVKIAKLPTDEVKSKVSCLLALCGWDFNSISNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNDDDDKNEKDKNKNKIKENEKEKDKKSSVYCSYCQRLCGVWNFNKIKPNSTSPFNEENINTTNNKGFNNSNIGSKRKREEDIEEEKRNIQFEKVLNQSFARTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKKLNSNSNSNNNSNNNSNNNSLFSIVGNGFSKVTSNSQSTGWDWGNSFSNRISDFKAALEIANATEKKKEFSPINEHRWFCPWMIVVDSNRLIIDNNDILGENSQDNNNNSGSSNNSSNSNSSISGWENLLKLLLNQSTFDKTKFYSFFIFFYFFYFYFYFLFLLCGWNALWVFFFLLPENK", "length": 647 }, "evidence": [ { "id": "F1SMR6", "url": "https://omabrowser.org/oma/group/F1SMR6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q80YV2-1", "protein_name": "Zinc finger C3HC-type protein 1", "gene_name": "Zc3hc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAATSEGPLFAASIEKTWGSVVRSPEGTPQKVRELIDEGIVPEEGGTEPKDTAATFQSVDGSPQAEQSPLESTSKEAFFHRVETFSSLKWAGKPPELSPLICAKYGWVTVECDMLKCSSCQAFLCASLQPTFDFGRYKERCAELKKSLCSAHEKFCFWPDSPSPDRFGMLPLGEPAVLISEFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDAVSALLHLLEDELDFHADDRKTTSKLGSDVQVQATACVLSLCGWACSSLEPTQLSLITCYQCMRKVGLWGFQQIESSMTDLEASFGLTSSPIPGVEGRPEHFPLVPESPRRMMTRSQDATVSPGSEQSEKSPGPIVSRTRSWESSSPVDRPELEAASPTTRSRPVTRSMGTGDSAGVEVPSSPLRRTKRARLCSSSSSDTSPRSFFDPTSQHRDWCPWVNITLVKETKENGETEVDACTPAEPGWKAVLTILLAHKRSNQPAETDSMSLSEKSRKVFRIFRQWESSSSS", "length": 501 }, "evidence": [ { "id": "F1SMR6", "url": "https://omabrowser.org/oma/group/F1SMR6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86WB0-1", "protein_name": "Zinc finger C3HC-type protein 1", "gene_name": "ZC3HC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPCEGQAFAVGVEKNWGAVVRSPEGTPQKIRQLIDEGIAPEEGGVDAKDTSATSQSVNGSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSCQAFLCASLQPAFDFDRYKQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVSEFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGSDIQVHVTACILSVCGWACSSSLESMQLSLITCSQCMRKVGLWGFQQIESSMTDLDASFGLTSSPIPGLEGRPERLPLVPESPRRMMTRSQDATFSPGSEQAEKSPGPIVSRTRSWDSSSPVDRPEPEAASPTTRTRPVTRSMGTGDTPGLEVPSSPLRKAKRARLCSSSSSDTSSRSFFDPTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTILLAHKQSSQPAETDSMSLSEKSRKVFRIFRQWESLCSC", "length": 502 }, "evidence": [ { "id": "F1SMR6", "url": "https://omabrowser.org/oma/group/F1SMR6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nuclear pore nuclear basket", "id": "GO:0044615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044615", "evidence": [ { "database": "UniProtKB", "id": "F1SMR6", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SMR6", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SMR6", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "F1SMR6", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SMR6", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" } ], "pmid": "" }, { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SMR6", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMR6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 501, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMR6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMR6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" }, { "id": "PF07967", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07967" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C3HC-type", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 199, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SMR6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMR6" }, { "id": "PF08600", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08600" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NuBaID C-terminal", "eco_id": "ECO_0000259", "start_pos": 248, "end_pos": 470, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 451 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 17, "end_pos": 19 }, { "start_pos": 432, "end_pos": 434 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMS6-1", "uniprot_ac": "F1SMS6", "uniprot_id": "F1SMS6_PIG", "mass": { "chemical_mass": 36762.0, "monoisotopic_mass": 36762.0 }, "refseq": {}, "gene_names": [ { "name": "RAX", "type": "recommended", "evidence": [ { "id": "F1SMS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" } ] } ], "protein_names": [ { "name": "Retina and anterior neural fold homeobox", "type": "synonym", "evidence": [ { "id": "F1SMS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMS6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMS6", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAX", "url": "https://www.uniprot.org/uniprotkb/F1SMS6", "locus": { "chromosome": "1", "start_pos": 161683060, "end_pos": 161678955, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004910", "url": "https://www.ensembl.org/id/ENSSSCG00000004910" } ] } } ], "crossref": [ { "id": "F1SMS6", "url": "https://alphafold.ebi.ac.uk/entry/F1SMS6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003654", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003654", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043562", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043562", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46271:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46271:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03826", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03826", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SMS6", "url": "https://www.uniprot.org/uniprotkb/F1SMS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SMS6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHLPGCAPAMADGSFSLAGHLLRSPGGSTSRLHSIEAILGFTKDDGILGSFPEEQGDRGSKERDRRPGSRTACPKAPAGSAEPSPPPAPARAPEYEDPRSYCPKETGEAQRSPGLPVGPAAPSDSKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPAAALAPLGASPAGSGGPAGGALPLESWLGPPLPGGATALQSLPGFGPPAQSLPASYTPPPPPPFLNSPPLGPGLQPLGPPPPPPAYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIGKPWQAL", "length": 346, "header": "tr|F1SMS6-1|F1SMS6_PIG Isoform 1 of Retina and anterior neural fold homeobox OS=Sus scrofa OX=9823 GN=RAX PE=3 SV=3 CANONICAL=F1SMS6-1" }, "isoforms": [ { "isoform_ac": "F1SMS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SMS6/entry#F1SMS6-1", "sequence": { "sequence": "MHLPGCAPAMADGSFSLAGHLLRSPGGSTSRLHSIEAILGFTKDDGILGSFPEEQGDRGSKERDRRPGSRTACPKAPAGSAEPSPPPAPARAPEYEDPRSYCPKETGEAQRSPGLPVGPAAPSDSKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPAAALAPLGASPAGSGGPAGGALPLESWLGPPLPGGATALQSLPGFGPPAQSLPASYTPPPPPPFLNSPPLGPGLQPLGPPPPPPAYPCGPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIGKPWQAL", "length": 346, "header": "tr|F1SMS6-1|F1SMS6_PIG Isoform 1 of Retina and anterior neural fold homeobox OS=Sus scrofa OX=9823 GN=RAX PE=3 SV=3 CANONICAL=F1SMS6-1" }, "locus": { "chromosome": "1", "start_pos": 161683057, "end_pos": 161679154, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005417.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005417.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005282.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005282.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMS6", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SMS6", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SMS6", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SMS6", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SMS6", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SMS6", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SMS6", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 322, "end_pos": 324, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMS6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 346, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMS6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMS6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 135, "end_pos": 195, "start_aa": "Lys", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SMS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMS6" }, { "id": "PS50803", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50803" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "OAR", "eco_id": "ECO_0000259", "start_pos": 323, "end_pos": 336, "start_aa": "Ser", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 140, "end_pos": 142 }, { "start_pos": 322, "end_pos": 324 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMS8-1", "uniprot_ac": "F1SMS8", "uniprot_id": "F1SMS8_PIG", "mass": { "chemical_mass": 58318.0, "monoisotopic_mass": 58318.0 }, "refseq": { "ac": "XP_020955529", "name": "protein ERGIC-53", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955529" }, "gene_names": [ { "name": "LMAN1", "type": "recommended", "evidence": [ { "id": "F1SMS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ] }, { "name": "LMAN1", "type": "synonym", "evidence": [ { "id": "XP_020955529", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955529" } ] } ], "protein_names": [ { "name": "Lectin, mannose binding 1", "type": "synonym", "evidence": [ { "id": "F1SMS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMS8/entry#names_and_taxonomy" } ] }, { "name": "protein ERGIC-53", "type": "synonym", "evidence": [ { "id": "XP_020955529", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955529" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LMAN1", "url": "https://www.uniprot.org/uniprotkb/F1SMS8", "locus": { "chromosome": "1", "start_pos": 161631651, "end_pos": 161607143, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004908", "url": "https://www.ensembl.org/id/ENSSSCG00000004908" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004908", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004908", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06902", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06902", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153007", "url": "https://www.ncbi.nlm.nih.gov/gene/100153007", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153007", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153007", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WSAEFQF", "url": "https://omabrowser.org/oma/group/WSAEFQF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMS8", "url": "https://www.orthodb.org/?gene=F1SMS8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12223", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12223", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12223:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12223:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03388", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03388", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5694530", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8980692", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013106", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013404", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9013423", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020955529", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955529", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMS8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMS8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARSRQRGLQTGARPLFCALLLSLFRFVGGDGVGGDPAAAGSTGSSAAQPHRRFEYKYSFKGPHLVQSDGTVPFWAYAGNAIPSSDQIRIAPSLKSQRGSVWTKAKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLEGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIQYDHQNDGANQALASCQRDFRNKPYPIRAKIIYYQKTLTVMIHNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKDHPDLQGHPADEIFESIGDRELRQIFEGQNRIHLEIKQLNRQLDMILDEQRRYVSSLTEEISKRGAGIPGQHGQITQQELDTVVNTQHEILRQVNEMKNSMSETVRLVSGIQHPGSAGGVYETTQHFNDIKEHLHIVKRDIDHLVQRNMPSNEKPKCPELPPFPSCLSTVHFVIFVVVQTMLFIGYVMYRSQQEAAAKKFF", "length": 518, "header": "tr|F1SMS8-1|F1SMS8_PIG Isoform 1 of Lectin, mannose binding 1 OS=Sus scrofa OX=9823 GN=LMAN1 PE=1 SV=2 CANONICAL=F1SMS8-1" }, "isoforms": [ { "isoform_ac": "F1SMS8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMS8/entry#F1SMS8-1", "sequence": { "sequence": "MARSRQRGLQTGARPLFCALLLSLFRFVGGDGVGGDPAAAGSTGSSAAQPHRRFEYKYSFKGPHLVQSDGTVPFWAYAGNAIPSSDQIRIAPSLKSQRGSVWTKAKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLEGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIQYDHQNDGANQALASCQRDFRNKPYPIRAKIIYYQKTLTVMIHNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKDHPDLQGHPADEIFESIGDRELRQIFEGQNRIHLEIKQLNRQLDMILDEQRRYVSSLTEEISKRGAGIPGQHGQITQQELDTVVNTQHEILRQVNEMKNSMSETVRLVSGIQHPGSAGGVYETTQHFNDIKEHLHIVKRDIDHLVQRNMPSNEKPKCPELPPFPSCLSTVHFVIFVVVQTMLFIGYVMYRSQQEAAAKKFF", "length": 518, "header": "tr|F1SMS8-1|F1SMS8_PIG Isoform 1 of Lectin, mannose binding 1 OS=Sus scrofa OX=9823 GN=LMAN1 PE=1 SV=2 CANONICAL=F1SMS8-1" }, "locus": { "chromosome": "1", "start_pos": 161628169, "end_pos": 161607156, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005415.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005415.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005280.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005280.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 284, "start_aa": "Thr", "end_pos": 284, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr284", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153007", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153007", "resource": "KEGG Pathway" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" }, { "id": "R-SSC-5694530", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694530", "resource": "Reactome", "description": "Cargo concentration in the ER" }, { "id": "R-SSC-8980692", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8980692", "resource": "Reactome", "description": "RHOA GTPase cycle" }, { "id": "R-SSC-9013106", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013106", "resource": "Reactome", "description": "RHOC GTPase cycle" }, { "id": "R-SSC-9013404", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013404", "resource": "Reactome", "description": "RAC2 GTPase cycle" }, { "id": "R-SSC-9013408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013408", "resource": "Reactome", "description": "RHOG GTPase cycle" }, { "id": "R-SSC-9013423", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013423", "resource": "Reactome", "description": "RAC3 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "P49257-1", "protein_name": "Protein ERGIC-53", "gene_name": "LMAN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRIHLEIKQLNRQLDMILDEQRRYVSSLTEEISKRGAGMPGQHGQITQQELDTVVKTQHEILRQVNEMKNSMSETVRLVSGMQHPGSAGGVYETTQHFIDIKEHLHIVKRDIDNLVQRNMPSNEKPKCPELPPFPSCLSTVHFIIFVVVQTVLFIGYIMYRSQQEAAAKKFF", "length": 510 }, "evidence": [ { "id": "F1SMS8", "url": "https://omabrowser.org/oma/group/F1SMS8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D0F3-1", "protein_name": "Protein ERGIC-53", "gene_name": "Lman1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVSRRRVPQAGARSFFCALLLSFSQFTGSDGTGGDAAAPGAAGTQAELPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKAKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADTWNGVGIFFDSFDNDGKKNNPAIVVIGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTAEKDISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPADDIFESIGDRELRQVFEGQNRIHLEIKQLNRQLDMILDEQRRYVSSLTEEISRRGAGTPGQPGQVSQQELDTVVKSQQEILRQVNEVKNSMSETVRLVSGIQHPGSAGVYETTQHFMDIKEHLHVVKRDIDSLAQRSMPSNEKPKCPDLPPFPSCLSTIHFVIFVVVQTVLFVGYIMYRTQQEAAAKKFF", "length": 517 }, "evidence": [ { "id": "F1SMS8", "url": "https://omabrowser.org/oma/group/F1SMS8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9V3A8-1", "protein_name": "Ergic53, isoform A", "gene_name": "ergic53", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRPTFLAILCFLAWNPSSEATGNLSPGAVGVHRRFEYKYSFKPPYLAQKDGTVPFWEYGGNAIASSESVRVAPSLRSQKGAIWTKSQTNFDWWDVEIVFRVTGRGRIGADGLAFWYTTEKGDYNGPVFGSSDRWNGLAIMFDSFDNDNKHNNPYISAVLNDGTKLYDHAEDGTTQLLSGCLRDFRNKPFPTRARIEYYNNVLTVMIHNGMSNNNDDYELCLRADGVNLPKNGYFGISAATGGLADDHDVFHFLTTSLHAAGQVQEQPKVENQEKLTQEYKEYQDKLEKQKQEYKKDHPDEHKDEEDWEEFYESENQRELRQIWQGQSQIADHLRELSRKVDEIIGRQETTLSLVSRNAGQALPPPAAGGVPQQQLPVGAVSRSDVDLLLTNQNMLLSSIREIRQLVGDINVRTDNIQTNQKHAPTAQIQSTGYDVQTLIAEMRDGMNQVKQGITHVGQRLAAPQGAAQVANCPTGNCVGVTLFLSVTVVQLLLVFIYNVFKNRSEAQAKKFY", "length": 512 }, "evidence": [ { "id": "F1SMS8", "url": "https://omabrowser.org/oma/group/F1SMS8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "pmid": "" }, { "name": "COPII-coated ER to Golgi transport vesicle", "id": "GO:0030134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030134", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "pmid": "" }, { "name": "sarcomere", "id": "GO:0030017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030017", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment membrane", "id": "GO:0033116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033116", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "D-mannose binding", "id": "GO:0005537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005537", "evidence": [ { "database": "UniProtKB", "id": "F1SMS8", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMS8" }, { "id": "PS51328", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51328" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L-type lectin-like", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 275, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 284 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMT0-1", "uniprot_ac": "F1SMT0", "uniprot_id": "F1SMT0_PIG", "mass": { "chemical_mass": 26863.0, "monoisotopic_mass": 26863.0 }, "refseq": { "ac": "XP_001925420", "name": "EF-hand domain-containing protein D1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925420" }, "gene_names": [ { "name": "EFHD1", "type": "recommended", "evidence": [ { "id": "F1SMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT0" } ] }, { "name": "EFHD1", "type": "synonym", "evidence": [ { "id": "XP_001925420", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925420" } ] } ], "protein_names": [ { "name": "EF-hand domain family member D1", "type": "synonym", "evidence": [ { "id": "F1SMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT0/entry#names_and_taxonomy" } ] }, { "name": "EF-hand domain-containing protein D1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001925420", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925420" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMT0", "url": "https://www.uniprot.org/uniprotkb/F1SMT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EFHD1", "url": "https://www.uniprot.org/uniprotkb/F1SMT0", "locus": { "chromosome": "15", "start_pos": 133169428, "end_pos": 133120093, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016290", "url": "https://www.ensembl.org/id/ENSSSCG00000016290" } ] } } ], "crossref": [ { "id": "F1SMT0", "url": "https://alphafold.ebi.ac.uk/entry/F1SMT0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016290", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016290", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153398", "url": "https://www.ncbi.nlm.nih.gov/gene/100153398", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153398", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153398", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EVKHTYR", "url": "https://omabrowser.org/oma/group/EVKHTYR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMT0", "url": "https://www.orthodb.org/?gene=F1SMT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13025", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13025", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13025:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13025:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001925420", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925420", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMT0", "url": "https://www.uniprot.org/uniprotkb/F1SMT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SMT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASEELASKLQRRLQWEEMEEGGPQPEPRAAPVPEPQPQPPARAPIARADAELSVQLNRRLDINEGAARPRRCKVFHPYSEFPEFSRRLIKDLESMFKLYDAGRDGYIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMVLAKLSEIDVALEGVKGAKDFFEAKVQALSSASKFEAELKAEQEERKQAEEKRKLRQAAFRELKAAFST", "length": 237, "header": "tr|F1SMT0-1|F1SMT0_PIG Isoform 1 of EF-hand domain family member D1 OS=Sus scrofa OX=9823 GN=EFHD1 PE=1 SV=3 CANONICAL=F1SMT0-1" }, "isoforms": [ { "isoform_ac": "F1SMT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SMT0/entry#F1SMT0-1", "sequence": { "sequence": "MASEELASKLQRRLQWEEMEEGGPQPEPRAAPVPEPQPQPPARAPIARADAELSVQLNRRLDINEGAARPRRCKVFHPYSEFPEFSRRLIKDLESMFKLYDAGRDGYIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMVLAKLSEIDVALEGVKGAKDFFEAKVQALSSASKFEAELKAEQEERKQAEEKRKLRQAAFRELKAAFST", "length": 237, "header": "tr|F1SMT0-1|F1SMT0_PIG Isoform 1 of EF-hand domain family member D1 OS=Sus scrofa OX=9823 GN=EFHD1 PE=1 SV=3 CANONICAL=F1SMT0-1" }, "locus": { "chromosome": "15", "start_pos": 133168259, "end_pos": 133120540, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017739.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017739.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017258.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017258.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMT0", "url": "https://www.uniprot.org/uniprotkb/F1SMT0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153398", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153398", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A9T5-1", "protein_name": "EF-hand domain family, member D1", "gene_name": "Efhd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSEELACKLQRRLRLETRAETHQDSPQAAPCTAPAGHREPEPPAPAPTVSADSELNLKLSSRLNIHQGAVRSRRSKVFNPYTEFPEFSRRLLKDLERMFKTYDAGKDGFIDLMELKLMMEKLGAPQTHLGLKNMIQEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLLALAKFSEINVALEGVRGAKNFFEAKAQALACSSKFEAELKAEQDERKREEEARRLRQAAFRELKAAFSA", "length": 240 }, "evidence": [ { "id": "F1SMT0", "url": "https://omabrowser.org/oma/group/F1SMT0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q17QM6-1", "protein_name": "EF-hand domain-containing protein D1", "gene_name": "EFHD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASEELASKLQRRLQWEEGDSGLQPAPGAAPDPEPQPQPPAWAPTARADAELSAQLNRRLDINEGAARPRRCKVFHPYSEFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVALEGVKGAKDFFEAKVQALSCASKFEAELKAEQDERKREEEKRKVRQAAFRELKAAFSA", "length": 236 }, "evidence": [ { "id": "F1SMT0", "url": "https://omabrowser.org/oma/group/F1SMT0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BUP0-1", "protein_name": "EF-hand domain-containing protein D1", "gene_name": "EFHD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASEELACKLERRLRREEAEESGPQLAPLGAPAPEPKPEPEPPARAPTASADAELSAQLSRRLDINEGAARPRRCRVFNPYTEFPEFSRRLIKDLESMFKLYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLMALAKLSEIDVALEGVKGAKNFFEAKVQALSSASKFEAELKAEQDERKREEEERRLRQAAFQKLKANFNT", "length": 239 }, "evidence": [ { "id": "F1SMT0", "url": "https://omabrowser.org/oma/group/F1SMT0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D4J1-1", "protein_name": "EF-hand domain-containing protein D1", "gene_name": "Efhd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSEELACKLQRRLRLEVRAETDQGDPQPAPCDAPAGHPEPEPPARAPTASADSELNLKLSRRLDIHQGTARPGRSKVFNPYTEFPEFSRRLLKDLEKMFKTYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIKEVDEDFDGKLSFREFLLIFHKAAAGELQEDSGLLALAKFSEIDVALEGVRGAKNFFEAKAQALSCSSKFEAELKAEQEERKREEEARRLRQAAFRELKAAFSA", "length": 240 }, "evidence": [ { "id": "F1SMT0", "url": "https://omabrowser.org/oma/group/F1SMT0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SMT0", "url": "https://www.uniprot.org/uniprotkb/F1SMT0" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SMT0", "url": "https://www.uniprot.org/uniprotkb/F1SMT0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SMT0", "url": "https://www.uniprot.org/uniprotkb/F1SMT0" } ], "pmid": "" }, { "name": "calcium ion sensor activity", "id": "GO:0061891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061891", "evidence": [ { "database": "UniProtKB", "id": "F1SMT0", "url": "https://www.uniprot.org/uniprotkb/F1SMT0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of cellular hyperosmotic salinity response", "id": "GO:1900069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900069", "evidence": [ { "database": "UniProtKB", "id": "F1SMT0", "url": "https://www.uniprot.org/uniprotkb/F1SMT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMT0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 237, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMT0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMT0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT0" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 123, "start_aa": "Arg", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMT5-1", "uniprot_ac": "F1SMT5", "uniprot_id": "F1SMT5_PIG", "mass": { "chemical_mass": 65319.0, "monoisotopic_mass": 65319.0 }, "refseq": {}, "gene_names": [ { "name": "PRSS56", "type": "recommended", "evidence": [ { "id": "F1SMT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT5" } ] } ], "protein_names": [ { "name": "Serine protease 56", "type": "recommended", "evidence": [ { "id": "F1SMT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Serine protease required during eye development.", "evidence": [ { "database": "UniProtKB", "id": "F1SMT5", "url": "https://www.uniprot.org/uniprotkb/F1SMT5#function" }, { "database": "UniProtKB", "id": "ARBA00060315", "url": "https://www.uniprot.org/uniprotkb/ARBA00060315#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMT5", "url": "https://www.uniprot.org/uniprotkb/F1SMT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRSS56", "url": "https://www.uniprot.org/uniprotkb/F1SMT5", "locus": { "chromosome": "15", "start_pos": 133039367, "end_pos": 133034255, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016286", "url": "https://www.ensembl.org/id/ENSSSCG00000016286" } ] } } ], "crossref": [ { "id": "F1SMT5", "url": "https://alphafold.ebi.ac.uk/entry/F1SMT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016286", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016286", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24252:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24252:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SMT5", "url": "https://www.uniprot.org/uniprotkb/F1SMT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLAVLLLLLPPLPGPQFAHGHPLYLRLPPSTLQALSAQGTKVLRAAQRSAEWAVNRVAMEIQHRLHECRTPGWPRLQAPFLQDPPEPGPCGERHPGTVNVTRAHGRIVGGSAAPPGSWPWLVRLQLGGQPLCGGVLVAASWVLTAAHCFAGAQNELLWTVTLAEGPRGEKAEEVPVNRILPHPKFDPRTFHNDLALVQLWTPVSPAGAARPVCLPQEPQEPPAGTACAIAGWGALFEDGPEAEAVREARVPLLSPDTCRRALGPGLRPSSMLCAGYLAGGIDSCQGDSGGPLTCSEPGPHPREVLYGVTSWGDGCGEPGKPGVYTRVAVFKDWLREQMSAPFSHEPSCRELLAWNPKEEPLAEAAPPCAFYAHLCPGPAGACARLAHQQCLQRRRRCELRSLAHTLLELLRGAQELFGPRPGVRRLAPALTRPAPRLRDPPRRPSHEQRLHPGSWAAGTRFPKRRSEPRAEANGCPGLEPLRQKLATLQGTHAWILQVPSERLAMDFHEVLADLGSKTLTGLFRAWIQAGLGGRHVVFGGLVGLEPATLARSLPRLLVQALQAFRLAALAEAEPQGAQMGSRQARLGRKWHHRLSPRVPPGRS", "length": 604, "header": "tr|F1SMT5-1|F1SMT5_PIG Isoform 1 of Serine protease 56 OS=Sus scrofa OX=9823 GN=PRSS56 PE=4 SV=5 CANONICAL=F1SMT5-1" }, "isoforms": [ { "isoform_ac": "F1SMT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SMT5/entry#F1SMT5-1", "sequence": { "sequence": "MLLAVLLLLLPPLPGPQFAHGHPLYLRLPPSTLQALSAQGTKVLRAAQRSAEWAVNRVAMEIQHRLHECRTPGWPRLQAPFLQDPPEPGPCGERHPGTVNVTRAHGRIVGGSAAPPGSWPWLVRLQLGGQPLCGGVLVAASWVLTAAHCFAGAQNELLWTVTLAEGPRGEKAEEVPVNRILPHPKFDPRTFHNDLALVQLWTPVSPAGAARPVCLPQEPQEPPAGTACAIAGWGALFEDGPEAEAVREARVPLLSPDTCRRALGPGLRPSSMLCAGYLAGGIDSCQGDSGGPLTCSEPGPHPREVLYGVTSWGDGCGEPGKPGVYTRVAVFKDWLREQMSAPFSHEPSCRELLAWNPKEEPLAEAAPPCAFYAHLCPGPAGACARLAHQQCLQRRRRCELRSLAHTLLELLRGAQELFGPRPGVRRLAPALTRPAPRLRDPPRRPSHEQRLHPGSWAAGTRFPKRRSEPRAEANGCPGLEPLRQKLATLQGTHAWILQVPSERLAMDFHEVLADLGSKTLTGLFRAWIQAGLGGRHVVFGGLVGLEPATLARSLPRLLVQALQAFRLAALAEAEPQGAQMGSRQARLGRKWHHRLSPRVPPGRS", "length": 604, "header": "tr|F1SMT5-1|F1SMT5_PIG Isoform 1 of Serine protease 56 OS=Sus scrofa OX=9823 GN=PRSS56 PE=4 SV=5 CANONICAL=F1SMT5-1" }, "locus": { "chromosome": "15", "start_pos": 133039364, "end_pos": 133034454, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017734.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017734.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017253.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017253.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMT5", "url": "https://www.uniprot.org/uniprotkb/F1SMT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1SMT5", "url": "https://www.uniprot.org/uniprotkb/F1SMT5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SMT5", "url": "https://www.uniprot.org/uniprotkb/F1SMT5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SMT5", "url": "https://www.uniprot.org/uniprotkb/F1SMT5" } ], "pmid": "" }, { "name": "blood coagulation", "id": "GO:0007596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007596", "evidence": [ { "database": "UniProtKB", "id": "F1SMT5", "url": "https://www.uniprot.org/uniprotkb/F1SMT5" } ], "pmid": "" }, { "name": "camera-type eye development", "id": "GO:0043010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043010", "evidence": [ { "database": "UniProtKB", "id": "F1SMT5", "url": "https://www.uniprot.org/uniprotkb/F1SMT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMT5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 604, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMT5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMT5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMT5" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 108, "end_pos": 340, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMU4-1", "uniprot_ac": "F1SMU4", "uniprot_id": "F1SMU4_PIG", "mass": { "chemical_mass": 88848.0, "monoisotopic_mass": 88848.0 }, "refseq": { "ac": "XP_013848744", "name": "cadherin-20", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848744" }, "gene_names": [ { "name": "CDH20", "type": "recommended", "evidence": [ { "id": "F1SMU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ] }, { "name": "CDH20", "type": "synonym", "evidence": [ { "id": "XP_013848744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848744" } ] } ], "protein_names": [ { "name": "Cadherin-20", "type": "recommended", "evidence": [ { "id": "F1SMU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMU4/entry#names_and_taxonomy" } ] }, { "name": "cadherin-20", "type": "synonym", "evidence": [ { "id": "XP_013848744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848744" } ] } ], "function": [ { "annotation": "Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4#function" }, { "database": "UniProtKB", "id": "ARBA00037319", "url": "https://www.uniprot.org/uniprotkb/ARBA00037319#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDH20", "url": "https://www.uniprot.org/uniprotkb/F1SMU4", "locus": { "chromosome": "1", "start_pos": 159817159, "end_pos": 159917145, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004903", "url": "https://www.ensembl.org/id/ENSSSCG00000004903" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004903", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004903", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522414", "url": "https://www.ncbi.nlm.nih.gov/gene/100522414", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522414", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522414", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MSLYFCG", "url": "https://omabrowser.org/oma/group/MSLYFCG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMU4", "url": "https://www.orthodb.org/?gene=F1SMU4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF84", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF84", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013848744", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013848744", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMU4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWTSGRMSNAKSWLGLGMSLYFWGLMDLTTTVLSGTPTPPGELEALLSDKLQAHSRTKRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGVVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTDPNFQVGIITVKKPLSFESKKSYTLKVEGANPHLEMRFLNLGPFQDTTTVHISVEDVDEPPVFEPGFYFVEVPEDVAIGTTIQIISAKDPDVTNNSIRYSIDRSSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVSVTIKVLDVNDNAPEFPRFYEGFVCENAKAGQLIQTVSAVDQDDPRNGQHFYYSLAPEAANNPNFTIRDNQDNTARILTRRSGFRQQEQSVFYLPILISDNGQPVLSSTGTLTIQVCSCDDDGHVLSCSPEAYMLPVSLSRGALIAILACIFVLLVLVLLILSMRRHRKQPYIIDDEENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGGAPKTRQDMLPEIESLSRYVPQTCAVNSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATSDSEQSFDFLTDWGPRFRKLAELYGASEGPAPLW", "length": 801, "header": "tr|F1SMU4-1|F1SMU4_PIG Isoform 1 of Cadherin-20 OS=Sus scrofa OX=9823 GN=CDH20 PE=4 SV=3 CANONICAL=F1SMU4-1" }, "isoforms": [ { "isoform_ac": "F1SMU4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMU4/entry#F1SMU4-1", "sequence": { "sequence": "MWTSGRMSNAKSWLGLGMSLYFWGLMDLTTTVLSGTPTPPGELEALLSDKLQAHSRTKRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGVVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTDPNFQVGIITVKKPLSFESKKSYTLKVEGANPHLEMRFLNLGPFQDTTTVHISVEDVDEPPVFEPGFYFVEVPEDVAIGTTIQIISAKDPDVTNNSIRYSIDRSSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVSVTIKVLDVNDNAPEFPRFYEGFVCENAKAGQLIQTVSAVDQDDPRNGQHFYYSLAPEAANNPNFTIRDNQDNTARILTRRSGFRQQEQSVFYLPILISDNGQPVLSSTGTLTIQVCSCDDDGHVLSCSPEAYMLPVSLSRGALIAILACIFVLLVLVLLILSMRRHRKQPYIIDDEENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGGAPKTRQDMLPEIESLSRYVPQTCAVNSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATSDSEQSFDFLTDWGPRFRKLAELYGASEGPAPLW", "length": 801, "header": "tr|F1SMU4-1|F1SMU4_PIG Isoform 1 of Cadherin-20 OS=Sus scrofa OX=9823 GN=CDH20 PE=4 SV=3 CANONICAL=F1SMU4-1" }, "locus": { "chromosome": "1", "start_pos": 159876639, "end_pos": 159818163, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005409.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005409.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005274.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005274.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 38, "start_aa": "Thr", "end_pos": 38, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr38", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522414", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522414", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BAM8-1", "protein_name": "Cadherin-20", "gene_name": "CDH20", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWTSGRMSNAKSWLGLGVSLYFWGLMDLTTPVLSGTPTRPGRLEAFLSDKPQPHPRTKRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTDPNFQVGIITVKKPLSFERKKSYTLKVEGANPHLEMRFLNLGPFQDTTTVHISVEDVDEPPVFDPGSYFVEVPEDVAIGTTIQTISAKDPDVTNNSIRYSIDRSSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVPVTIKVLDVNDNAPEFPRFYEAFVCENAKAGQLIQTVSAVDQDDPRNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRSGFRQQEQSVFYLPILISDGGQPVLSSTGTLTIQVCGCDDEGHVLSCSPEAYMLPVSLSRGALIAILACVFVLLVLVLLILSLRRHRKQPYILDDEENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAAGAPKTRQDMLPEIESLSRYVPQTCAVSSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATSDSEQSFDFLTDWGPRFRKLAELYGASEGPAPLW", "length": 801 }, "evidence": [ { "id": "F1SMU4", "url": "https://omabrowser.org/oma/group/F1SMU4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5DWV1-1", "protein_name": "Cadherin-20", "gene_name": "Cdh20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWTTGRMSNAKSWLGLGTSLYFWALMDLATTVLSSTPMPEVELDTLFSGKPQSHQRSRRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSKTGIIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTDPNFQVGIITVKKPLSFESKKSYTLKVEGSNPHVEMRFLNLGPFQDTTTVHIIVEDVDEPPVFEPRFYFVEVPEDVTIGTTIQIISAKDPDMTNNSIRYSIDRGSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVAATIKVLDVNDNAPEFPRFYEAFICENAKAGQLIQTVSAVDQDDPHNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRSGFRQQEQSVFYLPILIADSGQPVLSSTGTLTIQVCSCSDDGHVMSCSPEAYMLPVSLSRGALIAILACVFVLLVLVLLILSMRRHRKQPYIIDDDENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGAAPKTRQDMLPEIESLSRYVPQTCAVSSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATSDSEQSFDFLTDWGPRFRKLAELYGASEGPSPLW", "length": 801 }, "evidence": [ { "id": "F1SMU4", "url": "https://omabrowser.org/oma/group/F1SMU4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8QGH3-1", "protein_name": "Cadherin-20", "gene_name": "CDH20", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWTSGRMSNAKNLFGLGVSLYFWGLMDLTTTVLSGSARPLTEGPEDNLSDKLHQRMKRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVASVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSRTGLIRTALMNMDREAKEYYEVIVQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVVAKDLDEGINAEMKYSLVDGDGLDVFDINTDPNYQVGIITVRKPLSFESKKSYTLKVEGANPHLEMRFLNLGPFRDTTTVHISVEDVDEPPVFEPSFYFVEVPEDVEIGATIQIISAKDPDVTNNSIRYSIDRSSDPGRFFYVDITSGALMTARPLDREDVSWHNITVLAMELNNPSQVGSVSVTVKVLDVNDNAPEFARFYEAFVCENAKAGQLIQTVSAIDRDDPQEGQHFYYSLAPEAANNPNFTLRDNQDNTAWILTRRSGFRQHEQNIFYLPILISDNGRPVLSSTGTLTVHVCSCDEGGMVMSCNAEAYVLPVSLSRGALIAILACIFVLLVLVLLILSMRRQRKQPYIIDEEENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQLVVKNRQDMLPEIESLSRYVPQACIMDNNVHNYVLAKLYEADMDLWAPPFDSLQTYMFEGNGSVAESLSSLQSVTTDSDQSYDYLTDWGPRFKKLAEMYGATDSSGALW", "length": 798 }, "evidence": [ { "id": "F1SMU4", "url": "https://omabrowser.org/oma/group/F1SMU4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9HBT6-1", "protein_name": "Cadherin-20", "gene_name": "CDH20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWTSGRMSNAKNWLGLGMSLYFWGLMDLTTTVLSDTPTPQGELEALLSDKPQSHQRTKRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPISSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDISTDPNFQVGIITVKKPLSFESKKSYTLKVEGANPHLEMRFLNLGPFQDTTTVHISVEDVDEPPVFEPGFYFVEVPEDVAIGTTIQIISAKDPDVTNNSIRYSIDRSSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVPVTIKVLDVNDNAPEFPRFYEAFVCENAKAGQLIQTVSAVDQDDPRNGQHFYYSLAPEAANNPNFTIRDNQDNTARILTRRSGFRQQEQSVFHLPILIADSGQPVLSSTGTLTIQVCSCDDDGHVMSCSPEAYMLPVSLSRGALIAILACIFVLLVLVLLILSMRRHRKQPYIIDDEENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGAAPKTRQDMLPEIESLSRYVPQTCAVNSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATSDSEQSFDFLTDWGPRFRKLAELYGASEGPAPLW", "length": 801 }, "evidence": [ { "id": "F1SMU4", "url": "https://omabrowser.org/oma/group/F1SMU4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z0M3-1", "protein_name": "Cadherin-20", "gene_name": "Cdh20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWTTGRMSNAKSWLGLGTSLYFWALMDLTATVLSSTPMPEVELETLFSGRSQSHQRSKRSWVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYIATVPEMSPVGTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALMNMDREAKEYYEVIIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPISSTVGRVFAKDLDEGINAEMKYTIVDGDGADAFDINTDQNFQVGIITVKKPLSFESKKSYTLKVEGSNPHLEMRFLNLGPFQDTTTVHISVEDVDEPPVFEPGFYFVEVPEDVTIGTTIQIISAKDPDVTNNSIRYSIDRGSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVAVTIKVLDVNDNAPEFPRFYEAFICENAKAGQLIQTVSAVDQDDPHNGQHFYYSLAPEAANNPNFTVRDNQDNTARILTRRSGFRQQEQSVFYLPILIADSGQPVLSSTGTLTIQVCSCNDDGHVMSCSPEAYLLPVSLSRGALIAILACIFVLLVLVLLILSMRRHRKQPYIIDDDENIHENIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGAAPKTRQDMLPEIESLSRYVPQTCAVSSTVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATSDSEQSFDFLTDWGPRFRKLAELYGASEGPAPLW", "length": 801 }, "evidence": [ { "id": "F1SMU4", "url": "https://omabrowser.org/oma/group/F1SMU4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" }, { "name": "catenin complex", "id": "GO:0016342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016342", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" }, { "name": "cell-cell junction assembly", "id": "GO:0007043", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007043", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" }, { "name": "adherens junction organization", "id": "GO:0034332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034332", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" }, { "name": "calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules", "id": "GO:0016339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016339", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" }, { "name": "cell-cell adhesion mediated by cadherin", "id": "GO:0044331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044331", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "F1SMU4", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 261, "end_pos": 263, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 461, "end_pos": 463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" }, { "start_pos": 719, "end_pos": 721, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMU4" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 85, "end_pos": 165, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 38 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 261, "end_pos": 263 }, { "start_pos": 420, "end_pos": 422 }, { "start_pos": 461, "end_pos": 463 }, { "start_pos": 542, "end_pos": 544 }, { "start_pos": 719, "end_pos": 721 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMW3-1", "uniprot_ac": "F1SMW3", "uniprot_id": "F1SMW3_PIG", "mass": { "chemical_mass": 42131.0, "monoisotopic_mass": 42131.0 }, "refseq": { "ac": "XP_020955234", "name": "serpin B5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955234" }, "gene_names": [ { "name": "SERPINB5", "type": "recommended", "evidence": [ { "id": "F1SMW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" } ] }, { "name": "SERPINB5", "type": "synonym", "evidence": [ { "id": "XP_020955234", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955234" } ] } ], "protein_names": [ { "name": "Serpin B5", "type": "recommended", "evidence": [ { "id": "F1SMW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW3/entry#names_and_taxonomy" } ] }, { "name": "Maspin", "type": "synonym", "evidence": [ { "id": "F1SMW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW3/entry#names_and_taxonomy" } ] }, { "name": "Peptidase inhibitor 5", "type": "synonym", "evidence": [ { "id": "F1SMW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW3/entry#names_and_taxonomy" } ] }, { "name": "serpin B5", "type": "synonym", "evidence": [ { "id": "XP_020955234", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955234" } ] } ], "function": [ { "annotation": "Tumor suppressor. It blocks the growth, invasion, and metastatic properties of mammary tumors. As it does not undergo the S (stressed) to R (relaxed) conformational transition characteristic of active serpins, it exhibits no serine protease inhibitory activity.", "evidence": [ { "database": "UniProtKB", "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3#function" }, { "database": "UniProtKB", "id": "ARBA00057728", "url": "https://www.uniprot.org/uniprotkb/ARBA00057728#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SERPINB5", "url": "https://www.uniprot.org/uniprotkb/F1SMW3", "locus": { "chromosome": "1", "start_pos": 158167646, "end_pos": 158195796, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004894", "url": "https://www.ensembl.org/id/ENSSSCG00000004894" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004894", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004894", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02057", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02057", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155836", "url": "https://www.ncbi.nlm.nih.gov/gene/100155836", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000240", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000240", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033836", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033836", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155836", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155836", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FITNWMK", "url": "https://omabrowser.org/oma/group/FITNWMK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMW3", "url": "https://www.orthodb.org/?gene=F1SMW3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF55", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF55", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020955234", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955234", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMW3-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEALQLANSAFAVDLFKHLCEKEPVGNVLFSPICLSTSLSLAQVGAKGDTAKEIGQVLHFENVKDVPFGFQTVTSDVNKLSSFYSLKLIKRLYIDKALNLSMEFISSTKRPYAKEMETVDFKDKLEETKGQINNSIKELTDGHFENILADNSVNDQTKILVVNAAYFIGKWMKKFPESETKECPFRVNKTDTKPVHMMNMEATFCMGNIDSINCKIIELPFQNKHLSMLILLPKDVEDGSTGLEQVEKQLSSETLLQWTNPSTMANAKVKLSIPKFKVEKSIDPRASLENLGLKNIFNEDTSDFSGMSETKGVALSNVIHKVCLEITEDGGDSIEVPGSRILQHKDEFNADHPFIYIIRHNKTRNIIFFGKFCSP", "length": 375, "header": "tr|F1SMW3-1|F1SMW3_PIG Isoform 1 of Serpin B5 OS=Sus scrofa OX=9823 GN=SERPINB5 PE=3 SV=1 CANONICAL=F1SMW3-1" }, "isoforms": [ { "isoform_ac": "F1SMW3-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW3/entry#F1SMW3-1", "sequence": { "sequence": "MEALQLANSAFAVDLFKHLCEKEPVGNVLFSPICLSTSLSLAQVGAKGDTAKEIGQVLHFENVKDVPFGFQTVTSDVNKLSSFYSLKLIKRLYIDKALNLSMEFISSTKRPYAKEMETVDFKDKLEETKGQINNSIKELTDGHFENILADNSVNDQTKILVVNAAYFIGKWMKKFPESETKECPFRVNKTDTKPVHMMNMEATFCMGNIDSINCKIIELPFQNKHLSMLILLPKDVEDGSTGLEQVEKQLSSETLLQWTNPSTMANAKVKLSIPKFKVEKSIDPRASLENLGLKNIFNEDTSDFSGMSETKGVALSNVIHKVCLEITEDGGDSIEVPGSRILQHKDEFNADHPFIYIIRHNKTRNIIFFGKFCSP", "length": 375, "header": "tr|F1SMW3-1|F1SMW3_PIG Isoform 1 of Serpin B5 OS=Sus scrofa OX=9823 GN=SERPINB5 PE=3 SV=1 CANONICAL=F1SMW3-1" }, "locus": { "chromosome": "1", "start_pos": 158187748, "end_pos": 158169241, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005400.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005400.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005265.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005265.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155836", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155836", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P36952-1", "protein_name": "Serpin B5", "gene_name": "SERPINB5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDALQLANSAFAVDLFKQLCEKEPLGNVLFSPICLSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFQTVTSDVNKLSSFYSLKLIKRLYVDKSLNLSTEFISSTKRPYAKELETVDFKDKLEETKGQINNSIKDLTDGHFENILADNSVNDQTKILVVNAAYFVGKWMKKFSESETKECPFRVNKTDTKPVQMMNMEATFCMGNIDSINCKIIELPFQNKHLSMFILLPKDVEDESTGLEKIEKQLNSESLSQWTNPSTMANAKVKLSIPKFKVEKMIDPKACLENLGLKHIFSEDTSDFSGMSETKGVALSNVIHKVCLEITEDGGDSIEVPGARILQHKDELNADHPFIYIIRHNKTRNIIFFGKFCSP", "length": 375 }, "evidence": [ { "id": "F1SMW3", "url": "https://omabrowser.org/oma/group/F1SMW3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P70124-1", "protein_name": "Serpin B5", "gene_name": "Serpinb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDALRLANSAFAVDLFKQLCERDPAGNILFSPICLSTSLSLAQVGTKGDTANEIGQVLHFENVKDVPFGFQTVTSDVNKLSSFYSLKLVKRLYIDKSLNPSTEFISSTKRPYAKELETVDFKDKLEETKGQINSSIKELTDGHFEDILSENSISDQTKILVVNAAYFVGKWMKKFPESETKECPFRISKTDTKPVQMMNLEATFCLGNIDDISCKIIELPFQNKHLSMLIVLPKDVEDESTGLEKIEQQLNPETLLQWTNPSTMANAKVKLSLPKFKVEKMIDPKASLESLGLKSLFNESTSDFSGMSETKGVSLSNVIHRVCLEITEDGGESIEVPGSRILQHKDEFNADHPFIYIIRHNKTRNIIFFGKFCSP", "length": 375 }, "evidence": [ { "id": "F1SMW3", "url": "https://omabrowser.org/oma/group/F1SMW3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P70564-1", "protein_name": "Serpin B5", "gene_name": "Serpinb5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDALRLANSAFAVELFKQLCEKEPAGNILFSPICLSTSLSLAQVGAKGDTANEIGQVLHFENVKDVPFGFKPITSDVNKLSSFYSLKLIKRLYIDKSLNLSTEFISSTKRPYANELETVDFKDKLEETKGQINSSIKELTDGHFEDILPENSISDQTKILVVNAAYFVGKWMKKFPESETKECPFRINKTDTKPVQMMNLEATFCLGNIDDINCKIIELPFQNKHLSMLIVLPKDVEDESTGLEKIEKQLNPETLLQWTNPSTMANAKVKLSLPKFKVEKMIDPKASLESLGLKSLFNESTSDFSGMSETKGVSVSNVIHRVCLEITEDGGDSIEVPGSRILQHKDEFKADHPFLFIVRHNKTRNIVFLGKFSSP", "length": 375 }, "evidence": [ { "id": "F1SMW3", "url": "https://omabrowser.org/oma/group/F1SMW3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" } ], "pmid": "" }, { "name": "apical part of cell", "id": "GO:0045177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045177", "evidence": [ { "database": "UniProtKB", "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" } ], "pmid": "" }, { "name": "cornified envelope", "id": "GO:0001533", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001533", "evidence": [ { "database": "UniProtKB", "id": "F1SMW3", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMW3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW3" }, { "id": "SM00093", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serpin", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 375, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 133, "end_pos": 135 }, { "start_pos": 188, "end_pos": 190 }, { "start_pos": 361, "end_pos": 363 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMW8-1", "uniprot_ac": "F1SMW8", "uniprot_id": "F1SMW8_PIG", "mass": { "chemical_mass": 45175.0, "monoisotopic_mass": 45175.0 }, "refseq": { "ac": "NP_001231090", "name": "serpin B10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231090" }, "gene_names": [ { "name": "SERPINB10", "type": "recommended", "evidence": [ { "id": "F1SMW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW8" } ] }, { "name": "SERPINB10", "type": "synonym", "evidence": [ { "id": "NP_001231090", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231090" } ] } ], "protein_names": [ { "name": "Serpin B10", "type": "recommended", "evidence": [ { "id": "F1SMW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW8/entry#names_and_taxonomy" } ] }, { "name": "serpin B10", "type": "synonym", "evidence": [ { "id": "NP_001231090", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231090" } ] }, { "name": "serpin peptidase inhibitor, clade B (ovalbumin), member 10", "type": "synonym", "evidence": [ { "id": "NP_001231090", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231090" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMW8", "url": "https://www.uniprot.org/uniprotkb/F1SMW8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SERPINB10", "url": "https://www.uniprot.org/uniprotkb/F1SMW8", "locus": { "chromosome": "1", "start_pos": 157841510, "end_pos": 157866913, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004889", "url": "https://www.ensembl.org/id/ENSSSCG00000004889" } ] } } ], "crossref": [ { "id": "F1SMW8", "url": "https://alphafold.ebi.ac.uk/entry/F1SMW8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004889", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004889", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19569", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19569", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154994", "url": "https://www.ncbi.nlm.nih.gov/gene/100154994", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000215", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000215", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154994", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154994", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "THEDMME", "url": "https://omabrowser.org/oma/group/THEDMME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMW8", "url": "https://www.orthodb.org/?gene=F1SMW8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11461:SF175", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11461:SF175", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231090", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231090", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMW8", "url": "https://www.uniprot.org/uniprotkb/F1SMW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMW8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSLAKSINQFAVEFSKKLAEAADGKNIFFSPWGISTSLAMVYLGTKGTTATQMAQVLQFSRDQDSKSYPDSEKKRRMEFNMDNVEEIHSDFQALISEINNSSNACILKTANRIYGEKTYPFCNKYLEDMKTYFGAEPQSVNFMEASGQIRKEINSWVESQTEGKILNLLPDDAVDSATRMVLVNALYFKGTWEHQFSVQNTTEKPFRINKTTSKPVQMMSMKEKLEVFHIEKPEAIGLQLFYESRDLSLLILLPEDISGLDQLEKAITYENLSEWTSADMMELYEVELHLPKFKLEETYDLKSTLSSMGMSDAFSQSKADFSGMSLERNLFLSNVFHKSFVEVNEQGTEAAGGTGSEVSFRIKLPSIEINADHPFLFFIRHNKTNSILFYGRFCSP", "length": 397, "header": "tr|F1SMW8-1|F1SMW8_PIG Isoform 1 of Serpin B10 OS=Sus scrofa OX=9823 GN=SERPINB10 PE=3 SV=1 CANONICAL=F1SMW8-1" }, "isoforms": [ { "isoform_ac": "F1SMW8-1", "url": "https://www.uniprot.org/uniprotkb/F1SMW8/entry#F1SMW8-1", "sequence": { "sequence": "MDSLAKSINQFAVEFSKKLAEAADGKNIFFSPWGISTSLAMVYLGTKGTTATQMAQVLQFSRDQDSKSYPDSEKKRRMEFNMDNVEEIHSDFQALISEINNSSNACILKTANRIYGEKTYPFCNKYLEDMKTYFGAEPQSVNFMEASGQIRKEINSWVESQTEGKILNLLPDDAVDSATRMVLVNALYFKGTWEHQFSVQNTTEKPFRINKTTSKPVQMMSMKEKLEVFHIEKPEAIGLQLFYESRDLSLLILLPEDISGLDQLEKAITYENLSEWTSADMMELYEVELHLPKFKLEETYDLKSTLSSMGMSDAFSQSKADFSGMSLERNLFLSNVFHKSFVEVNEQGTEAAGGTGSEVSFRIKLPSIEINADHPFLFFIRHNKTNSILFYGRFCSP", "length": 397, "header": "tr|F1SMW8-1|F1SMW8_PIG Isoform 1 of Serpin B10 OS=Sus scrofa OX=9823 GN=SERPINB10 PE=3 SV=1 CANONICAL=F1SMW8-1" }, "locus": { "chromosome": "1", "start_pos": 157862418, "end_pos": 157842171, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005395.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005395.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005260.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005260.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMW8", "url": "https://www.uniprot.org/uniprotkb/F1SMW8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154994", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154994", "resource": "KEGG Pathway" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A5PJK0-1", "protein_name": "Serpin B10", "gene_name": "SERPINB10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDFLAKSINQFALEFSKKLAESAEGKNIFFSPWGISASLAMVYLGTKGTTAAQMAQVLQFSRDQDSKFCPDSEKKRKMEFNVGKPEEIYSDFQTLISEINSSSHACILKTANRIYGEKTFPFHKKYLEDVKTYFGAEPQSVNFIGASDQIRKEINSWVEKQTEGKILNLLPDDAVDPTTRMVLVNALYFKGVWEHQFLVQNTTEKSFKINKTTSKPVQMMSMKEKLQVFYIESPQAMGLQLYYESRDLSLLILLPEDVDGLDQLEKTITYEKLSEWTSADMMELCNVQLNLPKFKLEETYDLKSTLSSMGMSDAFNQSKADFSGMSSERNLFLSNVFHKCFVEINEQGTEAAAGTGSEVSVRMKLPSIEFNADHPFLFFIRHNKTNGILFYGRFCSP", "length": 397 }, "evidence": [ { "id": "F1SMW8", "url": "https://omabrowser.org/oma/group/F1SMW8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P48595-1", "protein_name": "Serpin B10", "gene_name": "SERPINB10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDSLATSINQFALELSKKLAESAQGKNIFFSSWSISTSLTIVYLGAKGTTAAQMAQVLQFNRDQGVKCDPESEKKRKMEFNLSNSEEIHSDFQTLISEILKPNDDYLLKTANAIYGEKTYAFHNKYLEDMKTYFGAEPQPVNFVEASDQIRKDINSWVERQTEGKIQNLLPDDSVDSTTRMILVNALYFKGIWEHQFLVQNTTEKPFRINETTSKPVQMMFMKKKLHIFHIEKPKAVGLQLYYKSRDLSLLILLPEDINGLEQLEKAITYEKLNEWTSADMMELYEVQLHLPKFKLEDSYDLKSTLSSMGMSDAFSQSKADFSGMSSARNLFLSNVFHKAFVEINEQGTEAAAGSGSEIDIRIRVPSIEFNANHPFLFFIRHNKTNTILFYGRLCSP", "length": 397 }, "evidence": [ { "id": "F1SMW8", "url": "https://omabrowser.org/oma/group/F1SMW8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K3K4-1", "protein_name": "Serpin B10", "gene_name": "Serpinb10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASLAVSINQFAVEFSKKLAESAEGRNIFFSPWGISTSLAMVYLGTKGTTAAQMSQVLHFGSIQDFKFGPDSEKKRKMECHSGKSEEMQSDFQTLTAKILKHGNSYVLKIANRIYVEKTYLFHNKYLEDMKTYFGAEPQSVNFVEASGQIRKEINSWVGSQTGDKIPNLLPDDAVDNKTTMVLVNALYFKGTWEHQFSVQNTTERPFRINKTTSKPVQMMSMKQSLQVFHIEELQTIGVQLHYQNREFSLLLLLPEEVEGLKQLERAITYEKLDKWTSADMMDTYEVRLYLPKFKMEESYDLQSALRDMGMTDAFNQGKANFSNMTSERNLFLSNVFHKTFLEINEEGTEAAAGTGSEVNFRIKAPSIELNADHPFLFLIRHNVTNTILFDGRFYSP", "length": 397 }, "evidence": [ { "id": "F1SMW8", "url": "https://omabrowser.org/oma/group/F1SMW8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase inhibitor activity", "id": "GO:0004867", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004867", "evidence": [ { "database": "UniProtKB", "id": "F1SMW8", "url": "https://www.uniprot.org/uniprotkb/F1SMW8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SMW8", "url": "https://www.uniprot.org/uniprotkb/F1SMW8" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SMW8", "url": "https://www.uniprot.org/uniprotkb/F1SMW8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SMW8", "url": "https://www.uniprot.org/uniprotkb/F1SMW8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMW8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 397, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMW8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMW8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMW8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMW8" }, { "id": "SM00093", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serpin", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 397, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 101, "end_pos": 103 }, { "start_pos": 201, "end_pos": 203 }, { "start_pos": 210, "end_pos": 212 }, { "start_pos": 272, "end_pos": 274 }, { "start_pos": 383, "end_pos": 385 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMX9-1", "uniprot_ac": "F1SMX9", "uniprot_id": "F1SMX9_PIG", "mass": { "chemical_mass": 87016.0, "monoisotopic_mass": 87016.0 }, "refseq": { "ac": "XP_020955075", "name": "cadherin-7 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955075" }, "gene_names": [ { "name": "CDH7", "type": "recommended", "evidence": [ { "id": "F1SMX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ] }, { "name": "CDH7", "type": "synonym", "evidence": [ { "id": "XP_020955075", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955075" } ] } ], "protein_names": [ { "name": "Cadherin 7", "type": "synonym", "evidence": [ { "id": "F1SMX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMX9/entry#names_and_taxonomy" } ] }, { "name": "cadherin-7 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020955075", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955075" } ] } ], "function": [ { "annotation": "Cadherins are calcium-dependent cell adhesion proteins.", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9#function" }, { "database": "UniProtKB", "id": "RU004357", "url": "https://www.uniprot.org/uniprotkb/RU004357#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDH7", "url": "https://www.uniprot.org/uniprotkb/F1SMX9", "locus": { "chromosome": "1", "start_pos": 156295434, "end_pos": 156435822, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004886", "url": "https://www.ensembl.org/id/ENSSSCG00000004886" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004886", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004886", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156376", "url": "https://www.ncbi.nlm.nih.gov/gene/100156376", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156376", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156376", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YETMVCE", "url": "https://omabrowser.org/oma/group/YETMVCE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMX9", "url": "https://www.orthodb.org/?gene=F1SMX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF91", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF91", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418990", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020955075", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955075", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SMX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLGKVEFCHFLQLVALFLCFSGMSQAELSKSGSKPYFQSGRSRTKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPVASVVARIKAADADIGANAEMEYKIVDGDGLGIFKISVDKDTQEGIITIQKDLDFEAKTSYTLRIEAANKDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQVGNIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGVITTAKSLDRETNAVHNITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKISAVDKDEPSNGHQFYFSLTTDATNNHNFSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVDSGSPSLSSTNTLTIRVCDCDADGVAQTCNAEAYVLPAGLSTGALIAILACVLTLLVLILLIVTMRRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLHVIRDTKTRRDVTPEIQFLSRPTFKSIPDNVIFREFIWERLKEADVDPCAPPYDSLQTYAFEGNGSVAESLSSLESISSNSDQNYDYLSDWGPRFKRLADMYGTGQESLYS", "length": 785, "header": "tr|F1SMX9-1|F1SMX9_PIG Isoform 1 of Cadherin 7 OS=Sus scrofa OX=9823 GN=CDH7 PE=1 SV=3 CANONICAL=F1SMX9-1" }, "isoforms": [ { "isoform_ac": "F1SMX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SMX9/entry#F1SMX9-1", "sequence": { "sequence": "MKLGKVEFCHFLQLVALFLCFSGMSQAELSKSGSKPYFQSGRSRTKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPVASVVARIKAADADIGANAEMEYKIVDGDGLGIFKISVDKDTQEGIITIQKDLDFEAKTSYTLRIEAANKDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQVGNIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGVITTAKSLDRETNAVHNITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKISAVDKDEPSNGHQFYFSLTTDATNNHNFSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVDSGSPSLSSTNTLTIRVCDCDADGVAQTCNAEAYVLPAGLSTGALIAILACVLTLLVLILLIVTMRRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLHVIRDTKTRRDVTPEIQFLSRPTFKSIPDNVIFREFIWERLKEADVDPCAPPYDSLQTYAFEGNGSVAESLSSLESISSNSDQNYDYLSDWGPRFKRLADMYGTGQESLYS", "length": 785, "header": "tr|F1SMX9-1|F1SMX9_PIG Isoform 1 of Cadherin 7 OS=Sus scrofa OX=9823 GN=CDH7 PE=1 SV=3 CANONICAL=F1SMX9-1" }, "locus": { "chromosome": "1", "start_pos": 156424411, "end_pos": 156297659, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050457.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050457.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059313.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059313.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156376", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156376", "resource": "KEGG Pathway" }, { "id": "R-SSC-418990", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "resource": "Reactome", "description": "Adherens junctions interactions" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MZH6-1", "protein_name": "Cadherin-7", "gene_name": "Cdh7", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKLGKVELCHFLQLIALFLYFSGMSQAELPRSRSKPYFQSGRSRTKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPVASVVARIKAADADIGVNAEMEYKIVDGDGLGIFKISADKDTQEGIITIQKELDFEAKTSYTLRIEAANRDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQVGNIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGVITTAKSLDRETNAVHNITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKISAVDKDEPSNGHQFYFSLTTDTTNNHNFSLKDNKDNTASILTRRNGFRRQEQSIYYLPIFIVDSGSPSLSSTNTLTIRVCDCDADGVAQTCNAEAYVLPAGLSTGALIAILACVLTLLVLILLIVTMRRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVIRDNKTRRDVTPEIQFLSRPTFKSIPDNVIFREFIWERLKEADVDPGAPPYDSLQTYAFEGNGSVAESLSSLDSISSNSDQNYDYLSDWGPRFKRLADMYGNGQETLYS", "length": 785 }, "evidence": [ { "id": "F1SMX9", "url": "https://omabrowser.org/oma/group/F1SMX9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BF53-1", "protein_name": "Cadherin 7", "gene_name": "CDH7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLGKVEFCHFLQLISLFLCFSGMSQAELSRSGSKPYFQSGRSRTKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPVASVVARIKAADADIGANAEMDYKIVDGDGLGIFKIAVDKDTQEGIITIQKDLDFEAKTSYTLRIEAANRDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSAPLYPMEVSEATQVGNIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGVITTAKSLDRETNAVHNITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKVSAVDKDEPANGHQFYFSLTTDATNNHNFSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVDSGSPSLSSTNTLTIRVCDCDADGVAQTCNAEAYVLPAGLSTGALIAILACVLTLLVLILLIVTMRRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVMRDTKTRRDVTPEIQFLSRPTFKSIPDNVIFREFIWERLKEADVDPCAPPYDSLQTYAFEGNGSVAESLSSLDSISSNSDQNYDYLSDWGPRFKRLADMYGNGQESLYS", "length": 785 }, "evidence": [ { "id": "F1SMX9", "url": "https://omabrowser.org/oma/group/F1SMX9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1P1D4-1", "protein_name": "Cadherin 7", "gene_name": "CDH7", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKLGKVEFCHLLQIIALFLCLSGMNQAEPSRSRSKPYFQSGRTRTKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGIIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPLASVVARIKAADADVGPNAEMEYKIVDGDGLGVFKISVDKDTQEGIITIQKELDFEAKTSYTLRIEAANMHVDPRFLSLGPFSDMTTVKIIVEDVDEPPVFTSRLYSMVVSEAAKVGTIIGTVAAHDPDASNSPVRYSIDRNTDLERYFNIDANSGVITTAKSLDRETNAVHNITVLAMESQNPAQIGRGYVAITILDINDNAPEFAMEYETTVCENAQPGQIIQKISAIDKDDPPNGHQFYFSLTAEAANNHNFTLQDNKDNTATVLTRRNGFRRQEQSVFYLPIFIVDSGSPSLSSTNTLTIRVCDCDADGIAQTCNAEAYILPAGLSTGALIAILACVLTLLVLVLLIVTMRRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNIIRDTKTRRDVTPEIQFLSRPTFKSIPDNVIFREFIWERLKEADVDPCAPPYDSLQTYAFEGNGSVAESLSSLDSISSNSDQNYDYLSDWGPRFKRLADMYGSGPDCLYS", "length": 785 }, "evidence": [ { "id": "F1SMX9", "url": "https://omabrowser.org/oma/group/F1SMX9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5DWV2-1", "protein_name": "Cadherin-7", "gene_name": "Cdh7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLGKVELCRFLQLIALFLCFSGMNQAELPRSRSKPYFQLGRSRTKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGFIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNGPESLPVASVVARIKAADADIGVNAEMEYKIVDGDGLGIFKISPDKDTQEGIITIQKELDFEAKTSYTLRIEAANRDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQVGHIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGIITTAKSLDRETNPVHNITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKISAIDKDEPSNGHQFYFSLTTDMANNLNSSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVDNGSPSLSSTNTLTIRVCDCDADGIAQTCNAEAYILPAGLSTGALIAILACVLTLLVLILLIVTMKRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVVRDTKTRRDVTPEIQFLSRPTFKNIPDNVIFREFIWERLKEADVDPGAPPYDSLQTYAFEGNGSVAESLGSLDSNSSNSDQNYDYLSDWGPRFKRLAEMYGNGQESLYS", "length": 785 }, "evidence": [ { "id": "F1SMX9", "url": "https://omabrowser.org/oma/group/F1SMX9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BM92-1", "protein_name": "Cadherin-7", "gene_name": "Cdh7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLGKVELCHFLQLIALFLCFSGMSQAELPRSRSKPYFQSGRSRTKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPVASVVARIKAADADIGVNAEMEYKIVDGDGLGIFKISADKDTQEGIITIQKELDFEAKTSYTLRIEAANRDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQVGHIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGVITTAKSLDRETNAVHNITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKISAVDKDEPSNGHQFYFSLTTDMTNNHNFSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVDSGSPSLSSTNTLTIRVCDCDADGIAQTCNAEAYVLPAGLSTGALIAILACVLTLLVLILLIVTMRRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNAIRDSKTRRDVTPEIQFLSRPTFKNIPDNVIFREFIWERLKEADVDPGAPPYDSLQTYAFEGNGSVAESLSSLDSISSNSDQNYDYLSDWGPRFKRLAEMYGNGQESLYS", "length": 785 }, "evidence": [ { "id": "F1SMX9", "url": "https://omabrowser.org/oma/group/F1SMX9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ULB5-1", "protein_name": "Cadherin-7", "gene_name": "CDH7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLGKVEFCHFLQLIALFLCFSGMSQAELSRSRSKPYFQSGRSRTKRSWVWNQFFVLEEYMGSDPLYVGKLHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPVASVVARIKAADADIGANAEMEYKIVDGDGLGIFKISVDKETQEGIITIQKELDFEAKTSYTLRIEAANKDADPRFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQVGNIIGTVAAHDPDSSNSPVRYSIDRNTDLERYFNIDANSGVITTAKSLDRETNAIHNITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTVCENAQPGQVIQKISAVDKDEPSNGHQFYFSLTTDATNNHNFSLKDNKDNTASILTRRNGFRRQEQSVYYLPIFIVDSGSPSLSSTNTLTIRVCDCDADGVAQTCNAEAYVLPAGLSTGALIAILACVLTLLVLILLIVTMRRRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVIRDTKTRRDVTPEIQFLSRPAFKSIPDNVIFREFIWERLKEADVDPGAPPYDSLQTYAFEGNGSVAESLSSLDSISSNSDQNYDYLSDWGPRFKRLADMYGTGQESLYS", "length": 785 }, "evidence": [ { "id": "F1SMX9", "url": "https://omabrowser.org/oma/group/F1SMX9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" }, { "name": "catenin complex", "id": "GO:0016342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016342", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" }, { "name": "cell-cell junction assembly", "id": "GO:0007043", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007043", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" }, { "name": "adherens junction organization", "id": "GO:0034332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034332", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" }, { "name": "calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules", "id": "GO:0016339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016339", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" }, { "name": "cell-cell adhesion mediated by cadherin", "id": "GO:0044331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044331", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "F1SMX9", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 449, "end_pos": 451, "annotation": "n_glycosylation_sequon" }, { "start_pos": 530, "end_pos": 532, "annotation": "n_glycosylation_sequon" }, { "start_pos": 738, "end_pos": 740, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMX9" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 73, "end_pos": 153, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 449, "end_pos": 451 }, { "start_pos": 530, "end_pos": 532 }, { "start_pos": 738, "end_pos": 740 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SMZ4-1", "uniprot_ac": "F1SMZ4", "uniprot_id": "F1SMZ4_PIG", "mass": { "chemical_mass": 78309.0, "monoisotopic_mass": 78309.0 }, "refseq": { "ac": "XP_020932154", "name": "delta and Notch-like epidermal growth factor-related receptor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932154" }, "gene_names": [ { "name": "DNER", "type": "recommended", "evidence": [ { "id": "F1SMZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ] }, { "name": "DNER", "type": "synonym", "evidence": [ { "id": "XP_020932154", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932154" } ] } ], "protein_names": [ { "name": "Delta and Notch-like epidermal growth factor-related receptor", "type": "recommended", "evidence": [ { "id": "F1SMZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4/entry#names_and_taxonomy" } ] }, { "name": "delta and Notch-like epidermal growth factor-related receptor", "type": "synonym", "evidence": [ { "id": "XP_020932154", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932154" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNER", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4", "locus": { "chromosome": "15", "start_pos": 130415061, "end_pos": 130754048, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016258", "url": "https://www.ensembl.org/id/ENSSSCG00000016258" } ] } } ], "crossref": [ { "id": "F1SMZ4", "url": "https://alphafold.ebi.ac.uk/entry/F1SMZ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016258", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016258", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518938", "url": "https://www.ncbi.nlm.nih.gov/gene/100518938", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013032", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013032", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051022", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051022", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518938", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518938", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CECEDAY", "url": "https://omabrowser.org/oma/group/CECEDAY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SMZ4", "url": "https://www.orthodb.org/?gene=F1SMZ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24049", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24049", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24049:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24049:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19330", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19330", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020932154", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932154", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SMZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQPRRVSVPGAQLLPAPALLLLLLGAGPRSGCLANPVPAAPLPVPGPCAAQPCRNGGVCTPRPEPGPQSPATAGEPAYSCTCPAGVSGANCQLVADPCASNPCRHGNCSSSSSSSSSNGYLCICSEGYEGPNCEEALPSVPTNGWTESMAPRQLQPVPATQEPDIILPRSQATVTLPTWQPKTGQKVVEMKWDQAEVAPDIACGNASSNSSAGGRLVSFEVPQNTSVKIRQDATASLILLWKVTATGFRQCSLIDGRSVTLLQAPGGLVLLEEMLALGQNHFIGFVNDSVTKSIVALRLTLVVKASTCVPGESRANDLECSGKGRCTTKPSEATFSCDCDDQYTGTFCEEFDACQRKPCLNNASCVDANEKQDGGNFTCVCLAGYTGELCQSKIDYCVLDPCRNGATCISHLSGFTCQCPEGYLGATCEEKVDPCASSPCQNNGTCYADGLHFGCSCSAGFTGPACAQLVDFCALSPCAHGTCRSVGTSYKCLCDPGYHGLYCEEEYNECLSSPCLNAATCRDLVNGYECVCLAEYKGIHCESYKDPCANISCLNGGTCDSEGLNGTCVCAPGFTGEDCDIDINECDSNPCHHAGTCLDQPNGYTCHCPHGWVGANCEIHLQWKSGHMAESLTNMPRHSLYIIIGALCVAFILMLIILIVGICRISRIEYQGSSRPAYEEFYNCRSIDSEFSNAIASIRHARFGKKSRPAMYDVTPIAYEDYSPDDKPLVTLIKTKDL", "length": 738, "header": "tr|F1SMZ4-1|F1SMZ4_PIG Isoform 1 of Delta and Notch-like epidermal growth factor-related receptor OS=Sus scrofa OX=9823 GN=DNER PE=4 SV=3 CANONICAL=F1SMZ4-1" }, "isoforms": [ { "isoform_ac": "F1SMZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4/entry#F1SMZ4-1", "sequence": { "sequence": "MQPRRVSVPGAQLLPAPALLLLLLGAGPRSGCLANPVPAAPLPVPGPCAAQPCRNGGVCTPRPEPGPQSPATAGEPAYSCTCPAGVSGANCQLVADPCASNPCRHGNCSSSSSSSSSNGYLCICSEGYEGPNCEEALPSVPTNGWTESMAPRQLQPVPATQEPDIILPRSQATVTLPTWQPKTGQKVVEMKWDQAEVAPDIACGNASSNSSAGGRLVSFEVPQNTSVKIRQDATASLILLWKVTATGFRQCSLIDGRSVTLLQAPGGLVLLEEMLALGQNHFIGFVNDSVTKSIVALRLTLVVKASTCVPGESRANDLECSGKGRCTTKPSEATFSCDCDDQYTGTFCEEFDACQRKPCLNNASCVDANEKQDGGNFTCVCLAGYTGELCQSKIDYCVLDPCRNGATCISHLSGFTCQCPEGYLGATCEEKVDPCASSPCQNNGTCYADGLHFGCSCSAGFTGPACAQLVDFCALSPCAHGTCRSVGTSYKCLCDPGYHGLYCEEEYNECLSSPCLNAATCRDLVNGYECVCLAEYKGIHCESYKDPCANISCLNGGTCDSEGLNGTCVCAPGFTGEDCDIDINECDSNPCHHAGTCLDQPNGYTCHCPHGWVGANCEIHLQWKSGHMAESLTNMPRHSLYIIIGALCVAFILMLIILIVGICRISRIEYQGSSRPAYEEFYNCRSIDSEFSNAIASIRHARFGKKSRPAMYDVTPIAYEDYSPDDKPLVTLIKTKDL", "length": 738, "header": "tr|F1SMZ4-1|F1SMZ4_PIG Isoform 1 of Delta and Notch-like epidermal growth factor-related receptor OS=Sus scrofa OX=9823 GN=DNER PE=4 SV=3 CANONICAL=F1SMZ4-1" }, "locus": { "chromosome": "15", "start_pos": 130753323, "end_pos": 130415064, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017703.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017703.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017222.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017222.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518938", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518938", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1W2Q656-1", "protein_name": "Delta and Notch-like epidermal growth factor-related receptor", "gene_name": "Dner", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPPRRAQAPGAPLLPVLALLPLLLGAGPQSSCLASPVPAAPLPAPGPCASQPCRNGGVCTPRSVTDQEHPAVDAEPGYSCTCPAGVSGTDCQFVADPCASNPCHHGNCSSSSSSSSSSSSSSSSSDSYLCICNDGYEGLNCEQPLPSIPTSGWTESMAPRQLQPVPATQEPDIILPRSQATVTLPTWQPKTGQKVVEMKWDQVEVVPDVACGNASSNNSAGGRLVSFEVPQNTSVKIRQDATALLILLWKVTATGFQQCSLIDGRSVTPLQAPGGLVLLEEMLTLGPNHFIGFVNDSVAKSIVALRLTLVVKASTCVPGDGHSNDIECSGKGKCATKPSEATFSCTCEDQYIGTFCEEFDACQRKPCQNEASCIDANEKQDGSNFTCLCLPGYTGELCQSKIDYCVLDPCRNGATCVSSLSGFTCQCLEGYFGSACEEKVDPCMSSPCQNNGTCYVDGVHFTCSCSPGFTGPTCAQLVDFCALSPCAHGMCRSVGTSYKCLCDPGYHGLYCEEEYNECLSAPCLNAATCRDLVNGYECVCLAEYKGTHCELYKDPCANISCLNGGTCDSEGLNGTCICAPGFTGEECDIDINECDSNPCHHAGTCLDQPNGYTCHCPHGWVGANCEIHLQWKSGHMAESLTNMPRHSLYIIIGALCVAFILMLIILIVGICRISRIEYQGSSRPAYEEFYNCRSIDSEFSNAIASIRHARFGKKSRPAMYDVTPIAYEDYSPDDKPLVTLIKTKDL", "length": 746 }, "evidence": [ { "id": "F1SMZ4", "url": "https://omabrowser.org/oma/group/F1SMZ4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1A115-1", "protein_name": "Delta/notch like EGF repeat containing", "gene_name": "DNER", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPRAAPPLLLLLLLALAQRRSCLPGPVTAAPPGSDPCLGRPCRNNGTCFPAAPRRLPSAAAYRCVCPPGVTGASCQFISDPCASNPCHHGNCSTSGDGYLCACSDGYEGANCEHSRHSPPLPEQAEASSPRQSRPVTSTLEPDVILPHSRATVTLPTWQPRAGQKVVDLKWDEIEILPDVACGNASSNSSAGGRLVSFEVPQNTSIKIRQDATASLILLWKVTTAGFKQCSLIDGRSVTLLQALGGLVLSEEMLALGNNFFIGFLNDSVTKCIVALRLTVIVKVSTCTPAGSHSDKFQCSGKGKCITKPDEATFFCECEDEYRGPLCEEFDACQSQPCQNNATCTDLPQKHNGNNFTCSCLPGYTGELCQSEIDHCIQQPCQNGGTCSSNIHGFTCQCPEGFLGTSCEEKIDPCASSPCQNNGTCYADRLVYSCSCSSGFTGPTCAQLIDFCALNPCAHGICRSVGTSYKCLCSPGYHGLYCEEEYNECLSTPCQNGATCRDLENGYKCLCLAEYEGSLCELYKDPCVNINCQNGGTCDSEGLNATCICAPGYAGEECEIDINDCDSNPCHHAGTCIDQPGGYTCHCPHGWVGANCEIHLQWKSGHMAESLTNMPRHSLYIIIGALCVAFVLMLIILIVGICRISRIEYQGSSRPAYEEFYNCRSIDSEFSNAIASIRHARFGKKSRPAMYDATPIAYEDYSPDDKPLVTLIKTKDL", "length": 717 }, "evidence": [ { "id": "F1SMZ4", "url": "https://omabrowser.org/oma/group/F1SMZ4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1N5P0-1", "protein_name": "Delta/notch like EGF repeat containing", "gene_name": "DNER", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQPRRAPAPALLLLLLLGAGPRSGCLASPVPAAPLPVPGPCSAQPCQNGGVCSQLPAPDPQSPAAAGEPGYSCTCPAGVSGTNCQLVADPCTSNPCHHGNCSSSSSDGYLCICNEGYEGPNCEQALSSVPASGWTESTAPRQLQPVPATQEPEIMLPRSQATITLPTWQPKTGQKVVEMKWDQVEVVPDIACGNASANSSAGGRLVSFEVPQNTSVKIRQDATASLILLWKVTATGFQQCSLIDGRSVTLLQAPGGLVLLEEMLALGQNHFIGFVNDSITKSIVALRLTLVVKTSTCVPGESRANDLECSGRGRCSTKPSEATFSCNCDDQYTGTFCEEFDACQKKPCQNNASCVDAKEKQDGGNFTCVCLAGYTGELCQSKIDYCILDPCRNGATCTSNLSGFTCQCLEGYLGSTCEEKVDPCASAPCQNNGTCYADGLHFGCSCSAGFTGPACAQLVDFCALSPCAHGTCRSVGTSYKCLCDPGYHGLYCEEEYDECVSAPCLNAATCRDLVNGYECVCLAEYKGIHCESYKDPCANVSCLNGGTCDSEGLNGTCVCTPGFTGEECDIDINECDSNPCHHAGTCLDQPNGYTCHCPHGWVGANCEIHLQWKSGHMAESLTNMPRHSLYIIIGALCVAFILMLIILIVGICRISRIEYQGSARPAYEDFYNCRSIDSEFSNAIASIRHARFGKKSRPAMYDVTPIAYEDYSPDDKPLVTLIKTKDL", "length": 727 }, "evidence": [ { "id": "F1SMZ4", "url": "https://omabrowser.org/oma/group/F1SMZ4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8NFT8-1", "protein_name": "Delta and Notch-like epidermal growth factor-related receptor", "gene_name": "DNER", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQPRRAQAPGAQLLPALALLLLLLGAGPRGSSLANPVPAAPLSAPGPCAAQPCRNGGVCTSRPEPDPQHPAPAGEPGYSCTCPAGISGANCQLVADPCASNPCHHGNCSSSSSSSSDGYLCICNEGYEGPNCEQALPSLPATGWTESMAPRQLQPVPATQEPDKILPRSQATVTLPTWQPKTGQKVVEMKWDQVEVIPDIACGNASSNSSAGGRLVSFEVPQNTSVKIRQDATASLILLWKVTATGFQQCSLIDGRSVTPLQASGGLVLLEEMLALGNNHFIGFVNDSVTKSIVALRLTLVVKVSTCVPGESHANDLECSGKGKCTTKPSEATFSCTCEEQYVGTFCEEYDACQRKPCQNNASCIDANEKQDGSNFTCVCLPGYTGELCQSKIDYCILDPCRNGATCISSLSGFTCQCPEGYFGSACEEKVDPCASSPCQNNGTCYVDGVHFTCNCSPGFTGPTCAQLIDFCALSPCAHGTCRSVGTSYKCLCDPGYHGLYCEEEYNECLSAPCLNAATCRDLVNGYECVCLAEYKGTHCELYKDPCANVSCLNGATCDSDGLNGTCICAPGFTGEECDIDINECDSNPCHHGGSCLDQPNGYNCHCPHGWVGANCEIHLQWKSGHMAESLTNMPRHSLYIIIGALCVAFILMLIILIVGICRISRIEYQGSSRPAYEEFYNCRSIDSEFSNAIASIRHARFGKKSRPAMYDVSPIAYEDYSPDDKPLVTLIKTKDL", "length": 737 }, "evidence": [ { "id": "F1SMZ4", "url": "https://omabrowser.org/oma/group/F1SMZ4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "Notch signaling pathway", "id": "GO:0007219", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007219", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "pmid": "" }, { "name": "central nervous system development", "id": "GO:0007417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007417", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "pmid": "" }, { "name": "Notch binding", "id": "GO:0005112", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005112", "evidence": [ { "database": "UniProtKB", "id": "F1SMZ4", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 443, "end_pos": 445, "annotation": "n_glycosylation_sequon" }, { "start_pos": 550, "end_pos": 552, "annotation": "n_glycosylation_sequon" }, { "start_pos": 565, "end_pos": 567, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SMZ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 738, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SMZ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SMZ4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SMZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SMZ4" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 92, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 205, "end_pos": 207 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 287, "end_pos": 289 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 443, "end_pos": 445 }, { "start_pos": 550, "end_pos": 552 }, { "start_pos": 565, "end_pos": 567 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SN26-1", "uniprot_ac": "F1SN26", "uniprot_id": "F1SN26_PIG", "mass": { "chemical_mass": 25413.0, "monoisotopic_mass": 25413.0 }, "refseq": { "ac": "XP_003121579", "name": "telomere repeats-binding bouquet formation protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121579" }, "gene_names": [ { "name": "TERB2", "type": "recommended", "evidence": [ { "id": "F1SN26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN26" } ] }, { "name": "TERB2", "type": "synonym", "evidence": [ { "id": "XP_003121579", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121579" } ] } ], "protein_names": [ { "name": "Telomere repeat binding bouquet formation protein 2", "type": "synonym", "evidence": [ { "id": "F1SN26", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN26/entry#names_and_taxonomy" } ] }, { "name": "telomere repeats-binding bouquet formation protein 2", "type": "synonym", "evidence": [ { "id": "XP_003121579", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121579" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SN26", "url": "https://www.uniprot.org/uniprotkb/F1SN26" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TERB2", "url": "https://www.uniprot.org/uniprotkb/F1SN26", "locus": { "chromosome": "1", "start_pos": 126738663, "end_pos": 126768126, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004680", "url": "https://www.ensembl.org/id/ENSSSCG00000004680" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004680", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004680", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516583", "url": "https://www.ncbi.nlm.nih.gov/gene/100516583", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028065", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028065", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516583", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516583", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WFCRSVS", "url": "https://omabrowser.org/oma/group/WFCRSVS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SN26", "url": "https://www.orthodb.org/?gene=F1SN26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35345", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35345", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35345:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35345:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15101", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15101", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003121579", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121579", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SN26", "url": "https://www.uniprot.org/uniprotkb/F1SN26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN26-1", "url": "https://www.uniprot.org/uniprotkb/F1SN26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFQGQRGWFCGSVSGDLRQFWVAEGGTISDLRAADYLFSCDASHPDTLRIYQSLDYIEDNATVFHAYYLSAVANAEIKNSVALGHFILPPACLQKEIRRKIGNFIWEQDQRFLLEKHDEVTPNEIKAFRESSELATDHKKELSTSTEKHFIRTPVVEKQMYFPLQNYPVNNMVTGYISIDAMKKFLGELHDFIPGSSGYLAYHVQNEINMSAIKNKLKRKY", "length": 221, "header": "tr|F1SN26-1|F1SN26_PIG Isoform 1 of Telomere repeat binding bouquet formation protein 2 OS=Sus scrofa OX=9823 GN=TERB2 PE=4 SV=1 CANONICAL=F1SN26-1" }, "isoforms": [ { "isoform_ac": "F1SN26-1", "url": "https://www.uniprot.org/uniprotkb/F1SN26/entry#F1SN26-1", "sequence": { "sequence": "MFQGQRGWFCGSVSGDLRQFWVAEGGTISDLRAADYLFSCDASHPDTLRIYQSLDYIEDNATVFHAYYLSAVANAEIKNSVALGHFILPPACLQKEIRRKIGNFIWEQDQRFLLEKHDEVTPNEIKAFRESSELATDHKKELSTSTEKHFIRTPVVEKQMYFPLQNYPVNNMVTGYISIDAMKKFLGELHDFIPGSSGYLAYHVQNEINMSAIKNKLKRKY", "length": 221, "header": "tr|F1SN26-1|F1SN26_PIG Isoform 1 of Telomere repeat binding bouquet formation protein 2 OS=Sus scrofa OX=9823 GN=TERB2 PE=4 SV=1 CANONICAL=F1SN26-1" }, "locus": { "chromosome": "1", "start_pos": 126767927, "end_pos": 126739609, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005167.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005167.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005041.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005041.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SN26", "url": "https://www.uniprot.org/uniprotkb/F1SN26" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516583", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516583", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LNB2-1", "protein_name": "Telomere repeats-binding bouquet formation protein 2", "gene_name": "Terb2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFQGQRGWFCRSVSQDLRQFWVDEGGTVSDVQAADFLFSCDASHPDTLRIYQSLEYIEDNATVFHAYYLSAVANTEMKNSVALGHFVLPPACLQKEIRRKIGSFIWEQDENFLVKKHDRITSNERESSEPTTEHKKELYESAENHFVRTPVVEKQMYFPLQNYPVNNMVTGYISIDALEKFLGELHDFIPGSSGYLAYHVQNEINMSAIKNKLRRKLS", "length": 218 }, "evidence": [ { "id": "F1SN26", "url": "https://omabrowser.org/oma/group/F1SN26/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A1L6-1", "protein_name": "Telomere repeat binding bouquet formation protein 2", "gene_name": "Terb2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQGQRGWFCRSVSQALRQFWVDQGGMVSDAQAADFLFSCDASHPDTLRIYQSLEYTEDSATVFHAYYLAAVANAEKKNSVALGHFVLPPACLQKEIRRKIGSFIWEQDEKFQIEKHSRATSSVKGSTGPTTEHKQELSKSTENHLIRTPAIEKQTCFPLQNYPVNNMVTGYVSIDTLEKFLGELRDFIPGNSGYLAYHVQNEINMSVIKNKLRRKLS", "length": 218 }, "evidence": [ { "id": "F1SN26", "url": "https://omabrowser.org/oma/group/F1SN26/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2M2T9-1", "protein_name": "Telomere repeats-binding bouquet formation protein 2", "gene_name": "TERB2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFQGQRGWFCGSVSHDLRQFWVAEGGTISDPRAADFLFSCDASHPDTLRIYQSLDYIEDNATVFHAYYLSAVANAEIKNSVALGHFILPPASLQKEIRRKIGSFIWEQDQHFLIEKHDEVTSNELKVFRESSVLATDHKKDLSKSTEKHFIRTPVVEKQMYFPLQHYPVNNMVTGYISIDAMKKFLGELHDFIPGSSGYLAYHVQNEINMSAIKNKLKNKY", "length": 221 }, "evidence": [ { "id": "F1SN26", "url": "https://omabrowser.org/oma/group/F1SN26/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8NHR7-1", "protein_name": "Telomere repeats-binding bouquet formation protein 2", "gene_name": "TERB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFQGQRGWFCGSVSQDLRQFWVAEGGTISDPRAADFLFSCDASHPDTLRIYQSLDYIEDNATVFHAYYLSAVANAKIKNSVALGHFILPPACLQKEIRRKIGSFIWEQDQHFLIEKHDEVTPNEIKTLRENSELATEHKKELSKSPEKHFIRTPVVEKQMYFPLQNYPVNNMVTGYISIDAMKKFLGELHDFIPGTSGYLAYHVQNEINMSAIKNKLKRK", "length": 220 }, "evidence": [ { "id": "F1SN26", "url": "https://omabrowser.org/oma/group/F1SN26/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D494-1", "protein_name": "Telomere repeats-binding bouquet formation protein 2", "gene_name": "Terb2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQGQRGWFCGSVSQDLRQIWEDEGGMVSDVKAADFLFSCDASHPDTLRIYQSLEYIEDNATVFHAYYLAAIANTEMKNSVALGHFVLPPACLQKEIRRKIGSFIWEQDEKFQIEKHDRMASSDKENIRPTPEHKQELSKSAEHHLTRTPVIEKQMCFPLHSYPVNNMVTGYISIDALEKFLGELHDFTPGSSGYLAYHIQDEINMSAIKNKLRRKLS", "length": 218 }, "evidence": [ { "id": "F1SN26", "url": "https://omabrowser.org/oma/group/F1SN26/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "meiotic attachment of telomere to nuclear envelope", "id": "GO:0070197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070197", "evidence": [ { "database": "UniProtKB", "id": "F1SN26", "url": "https://www.uniprot.org/uniprotkb/F1SN26" } ], "pmid": "" }, { "name": "homologous chromosome pairing at meiosis", "id": "GO:0007129", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007129", "evidence": [ { "database": "UniProtKB", "id": "F1SN26", "url": "https://www.uniprot.org/uniprotkb/F1SN26" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nuclear inner membrane", "id": "GO:0005637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005637", "evidence": [ { "database": "UniProtKB", "id": "F1SN26", "url": "https://www.uniprot.org/uniprotkb/F1SN26" } ], "pmid": "" }, { "name": "chromosome, telomeric region", "id": "GO:0000781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000781", "evidence": [ { "database": "UniProtKB", "id": "F1SN26", "url": "https://www.uniprot.org/uniprotkb/F1SN26" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 209, "end_pos": 211 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SN69-1", "uniprot_ac": "F1SN69", "uniprot_id": "F1SN69_PIG", "mass": { "chemical_mass": 185185.0, "monoisotopic_mass": 185185.0 }, "refseq": { "ac": "XP_013849239", "name": "collagen alpha-1(XXVII) chain isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849239" }, "gene_names": [ { "name": "COL27A1", "type": "recommended", "evidence": [ { "id": "F1SN69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN69" } ] }, { "name": "COL27A1", "type": "synonym", "evidence": [ { "id": "XP_013849239", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849239" } ] } ], "protein_names": [ { "name": "Collagen alpha-1(XXVII) chain", "type": "recommended", "evidence": [ { "id": "F1SN69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN69/entry#names_and_taxonomy" } ] }, { "name": "collagen alpha-1(XXVII) chain isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013849239", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849239" } ] } ], "function": [ { "annotation": "Plays a role during the calcification of cartilage and the transition of cartilage to bone.", "evidence": [ { "database": "UniProtKB", "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69#function" }, { "database": "UniProtKB", "id": "ARBA00057896", "url": "https://www.uniprot.org/uniprotkb/ARBA00057896#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL27A1", "url": "https://www.uniprot.org/uniprotkb/F1SN69", "locus": { "chromosome": "1", "start_pos": 254923823, "end_pos": 254770093, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005487", "url": "https://www.ensembl.org/id/ENSSSCG00000005487" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005487", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005487", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102159686", "url": "https://www.ncbi.nlm.nih.gov/gene/102159686", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102159686", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102159686", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CNFTQGG", "url": "https://omabrowser.org/oma/group/CNFTQGG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01410", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01410", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2022090", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948216", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013849239", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013849239", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN69-1", "url": "https://www.uniprot.org/uniprotkb/F1SN69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAGSARGARSTAAAARGGGFLFIWILVSLACHLASAQGAPEDVDVLQRLGLSWTKAAGGRSPPPPGVIPFQSGFIFTQRARLQAPTTAVIPATLGPELALVLSLCSHRVNHAFLFAVRSRKHKLQLGLQFLPGKTVVHLGPRRSVAFDLDVHDGRWHHLALELRGRSVTLVTACGQRRVPVSLPFHRDPALDPEGLFLFGKMSPHAVQFEGALCQFSIYPVTRVAHNYCTHLRKQCGQADTYRPQLGPFLPRDSGTPLTFQTDLALLGLENLTTATPALGSQPAGRGPRVTVVPATPAKPLRTSTTGPHQPVTVEGPSHTPLPPSKLSTTELPPMSPASPASSTRPVQPVLKSTATQIPKSHPAKPSALSPSTVPVKSPHPTLKAAPPSFTKPAPPTKKLPTSQPVPTKVSRPTVKPIQRHPVTPRPPPPSARPLPPATTGSSKKPFPPVVRAEAKMSGRASELAPARTSTHKPPQPTGLPPSPAPSPVSTRTPRPPATVVPPTLAPGSAPTGSKKPTGSEATKKAKPKSSPRKPAPPRPGKATRDVPLKDPTPGPSPRHPRPSRQTTPAPVLAPARFLSSSPRPMSTGYSFFHLVGPTPFLLLMGPPGPKGDCGLPGPPGLPGLPGPPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDVGLPGLLGNPGPLGRKGYKGYPGPAGHPGEQGPPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGERGPPGLDGNPGELGLPGPPGVPGLIGDMGALGPIGYPGPKGMKGLMGNVGESGLKGDKGEQGVPGVSGDTGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSLGFPGPPGPEGFPGDIGPPGDNGPEGTKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGPDGLKGEPGNPGRPGPVGEQGLLGFIGLVGEPGIMGEKGDRGMTGPPGAPGPKGSMGHPGTPGGVGTPGEPGPPGPPGSRGPPGMRGAKGRRGPRGPDGPTGEQGSRGLKGPPGPQGRPGQPGQQGAAGERGHWGARGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPQGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPAGPDGLKGDRGDPGPDGEHGEKGQEGLKGEDGPPGPPGITGVQGPEGKPGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIMGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGNPGQQGQPGHPGPRGRPGPKGSKGEEGPKGKQGKAGAPGRRGTQGLPGLPGPRGVVGRQGPEGVAGPDGLPGLDGQAGQQGEQGDDGDPGPLGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPLGILGPSGRQGPKGDKGSRGDLGLQGPRGPPGPRGQPGPPGPPGSPVHFQQDDLGAAFQTWMDTSGALRAEGYSHPPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMNFLHLLSSEVTQQITIHCLNMTVWQEGPGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSMDGCKVQDGRWHQTLFIFRTQDPQQLPIVSVDNLPPASSGKQYRLEVGPACFL", "length": 1843, "header": "tr|F1SN69-1|F1SN69_PIG Isoform 1 of Collagen alpha-1(XXVII) chain OS=Sus scrofa OX=9823 GN=COL27A1 PE=4 SV=3 CANONICAL=F1SN69-1" }, "isoforms": [ { "isoform_ac": "F1SN69-1", "url": "https://www.uniprot.org/uniprotkb/F1SN69/entry#F1SN69-1", "sequence": { "sequence": "MGAGSARGARSTAAAARGGGFLFIWILVSLACHLASAQGAPEDVDVLQRLGLSWTKAAGGRSPPPPGVIPFQSGFIFTQRARLQAPTTAVIPATLGPELALVLSLCSHRVNHAFLFAVRSRKHKLQLGLQFLPGKTVVHLGPRRSVAFDLDVHDGRWHHLALELRGRSVTLVTACGQRRVPVSLPFHRDPALDPEGLFLFGKMSPHAVQFEGALCQFSIYPVTRVAHNYCTHLRKQCGQADTYRPQLGPFLPRDSGTPLTFQTDLALLGLENLTTATPALGSQPAGRGPRVTVVPATPAKPLRTSTTGPHQPVTVEGPSHTPLPPSKLSTTELPPMSPASPASSTRPVQPVLKSTATQIPKSHPAKPSALSPSTVPVKSPHPTLKAAPPSFTKPAPPTKKLPTSQPVPTKVSRPTVKPIQRHPVTPRPPPPSARPLPPATTGSSKKPFPPVVRAEAKMSGRASELAPARTSTHKPPQPTGLPPSPAPSPVSTRTPRPPATVVPPTLAPGSAPTGSKKPTGSEATKKAKPKSSPRKPAPPRPGKATRDVPLKDPTPGPSPRHPRPSRQTTPAPVLAPARFLSSSPRPMSTGYSFFHLVGPTPFLLLMGPPGPKGDCGLPGPPGLPGLPGPPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDVGLPGLLGNPGPLGRKGYKGYPGPAGHPGEQGPPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGERGPPGLDGNPGELGLPGPPGVPGLIGDMGALGPIGYPGPKGMKGLMGNVGESGLKGDKGEQGVPGVSGDTGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSLGFPGPPGPEGFPGDIGPPGDNGPEGTKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGPDGLKGEPGNPGRPGPVGEQGLLGFIGLVGEPGIMGEKGDRGMTGPPGAPGPKGSMGHPGTPGGVGTPGEPGPPGPPGSRGPPGMRGAKGRRGPRGPDGPTGEQGSRGLKGPPGPQGRPGQPGQQGAAGERGHWGARGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPQGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPAGPDGLKGDRGDPGPDGEHGEKGQEGLKGEDGPPGPPGITGVQGPEGKPGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIMGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGNPGQQGQPGHPGPRGRPGPKGSKGEEGPKGKQGKAGAPGRRGTQGLPGLPGPRGVVGRQGPEGVAGPDGLPGLDGQAGQQGEQGDDGDPGPLGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPLGILGPSGRQGPKGDKGSRGDLGLQGPRGPPGPRGQPGPPGPPGSPVHFQQDDLGAAFQTWMDTSGALRAEGYSHPPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMNFLHLLSSEVTQQITIHCLNMTVWQEGPGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSMDGCKVQDGRWHQTLFIFRTQDPQQLPIVSVDNLPPASSGKQYRLEVGPACFL", "length": 1843, "header": "tr|F1SN69-1|F1SN69_PIG Isoform 1 of Collagen alpha-1(XXVII) chain OS=Sus scrofa OX=9823 GN=COL27A1 PE=4 SV=3 CANONICAL=F1SN69-1" }, "locus": { "chromosome": "1", "start_pos": 254922936, "end_pos": 254770292, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006033.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006033.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005883.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005883.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1056, "start_aa": "Thr", "end_pos": 1056, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1056", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1157, "start_aa": "Thr", "end_pos": 1157, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1157", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1262, "start_aa": "Thr", "end_pos": 1262, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1262", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 297, "start_aa": "Thr", "end_pos": 297, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr297", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 425, "start_aa": "Thr", "end_pos": 425, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr425", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 600, "start_aa": "Thr", "end_pos": 600, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr600", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102159686", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102159686", "resource": "KEGG Pathway" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" }, { "id": "R-SSC-2022090", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022090", "resource": "Reactome", "description": "Assembly of collagen fibrils and other multimeric structures" }, { "id": "R-SSC-8948216", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "resource": "Reactome", "description": "Collagen chain trimerization" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MT85-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGAGSARGTRGTAAAAAAQGGGFLFTWILVSLTCHLASTQGAPEDVDVLQQLGLSWTKAVGGRSPPPPGVIPFQTGFIFTQRARLQAPTAAVLPASLGTELALVLSLCSHRVNHAFLFAVRSRKRKLQLGLQFLPGKTVVHLGPRRSVAFDLDVHDGRWHHLALELRGRTVTLVTACGQHRVPVSLPFHRDPALDPDGLFLFGKMSPHAVQFEGALCQFSIYPVAQVAHNYCTHLRKQCGQADTYRPQLGPFFPRDSGTLLTFQTDLARLGLENLTTATPALGSRPAGRGPGVTVVPAVPVKPMRTSTTRPPQPITSHPAWTPLSPAKLSVSEGPPPVSPVSPASSPRPVQPLQKNTATKTSKSHPATPSALSPSIAPVRSPRPTQKTALPAFTKPAPPTKKPVLPTSQPIPAKVSRPTVKPIQRNPGMPRLPPPSARPLPPAAASSKKPLPPVVQAEAKMSSRASEPAPAHTSTHRPPPPTVPPPSPVPSPSPPRTARPPATAMPPTLAPGSASTGSKKPTGSEATKKARPRKPVPLRSGKAARDVPLNDPTRGSSPRQPRTRQQTTPAPALAPARFLASSPQPMSTGYSFFHLVGPTPFLLLMGPPGPKGDCGLPGPPGLPGLPGPPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLTGNPGPLGRKGQKGYPGPTGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGERGPPGLDGNPGELGLPGPPGVPGLIGDMGTLGPIGYPGPKGMKGLMGNVGEPGLKGDKGEQGVPGVSGDAGFQGDKGSQGLQGFPGARGKPGPVGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGVKGKPGARGLPGPRGQLGPEGDEGPMGPPGVPGLEGQPGRKGFPGRPGPDGLKGEPGDAGRPGPVGEQGLLGFVGLVGEPGIMGEKGDRGMMGPPGAPGPKGSMGHPGIPGVVGNPGEPGPPGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSKGLKGPPGPQGRLGQPGQQGVAGERGHLGTRGFPGLRGPSGPPGAKGLPGEPGPQGPQGPIGPPGEMGPKGPPGALGELGLPGEAGMKGDLGPLGIPGEQGLIGQRGEPGLEGDSGPAGPDGLKGDRGDPGPDGERGEKGQEGLKGEDGPPGPPGITGIRGPEGKPGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIMGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGNPGQQGQPGHPGPRGRPGPKGSKGEEGPKGKQGKAGAPGRRGIQGLQGLPGPRGVVGRQGPEGVAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGDPGVAGLPGAQGPPGFKGESGLPGQMGPPGKRGTEGGMGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPQGDVGFKGIQGPRGPPGLMGKEGIIGPLGILGPSGRQGPKGDKGSRGDLGLQGPRGPPGPRGQPGPPGPPGSTIHFQQDDLGAAFQTWMDTSGALRAEGYSHPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMNFLHLLSSEVTQQITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFSPEVSMDGCKIQDGRWHQTLFTFRTQDPQQLPIVGVDNLPPASSGKQYRLEVGPACFL", "length": 1841 }, "evidence": [ { "id": "F1SN69", "url": "https://omabrowser.org/oma/group/F1SN69/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A9J7JG31-1", "protein_name": "Collagen alpha-1(XXVII) chain isoform X1", "gene_name": "Col27a1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGTGSAQGARGTAAAGHGGGFLFAWILVSFACHLASTQGAPEDVDVLQRLGLSWTKAGGGRSPAPPGVIPFPSGFIFTQRARLQAPTATILPTALGQELALVLSLCSHRVNHAFLFAIRSRKHRLQLGLQFLPGRTLVHLGPRQSVAFDLDVHDGHWHHLALELRGRTVTLVTACGQHRVPIPLPSRRDSMLDPQGSFLLGKMNPRAVQFEGALCQFSIHPVAQVAHNYCAYLRERCRQVDTYGPQVGALFPWNSGPAFALHPEPAFLGLGNLTRAPATLSARPVVRAPMVTMAPAMPTKPLRIVPPDVPQHSSAQTPPGPAKQSVRKTSSPSPSASLASSTRIFHPAAAQPLQITVTSPTKRPPTKTPPSSLSVTPVKGPHPTQKTAAPLPTKPVVLPAQKPVTRTPHLAPSKASSPTGRPVQKTFVTPRPLAPSPQPLRPTVGLLKKSAIPTVAESKSKITSWASKQVRTSAPKSLQQTIVSQSPVPYLGSTRASLTLATALPPLGFGNPRMAPPTHDSSSTPAGSKKFKGLEASKKTRPKNSPRKPIPLRPEKTARDALSRDLTTKPSQLSTPLVLAPAHLLSSSPRPTSSSFPFFHLPGPTPFPMLMGPPGSKGDCGLPGPPGLPGLPGSPGARGPRGMAGIPEVHLHEQGPPGPYGNPGPPGPPGAKGQKGDPGLSPGQAHDGAKGNMGLPGLSGNPGPLGRKGHKGHPGAAGHPGEQGQPGPEGSPGAKGYPGRQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGEMGRPGFPGDFGERGPPGLDGNPGEIGLPGPPGVPGLIGDMGALGSIGYPGPKGMKGLMGGVGEPGLKGDKGEQGFPGVSGDPGFQGDKGSQGLPGVPGARGKPGPLGKAGDKGSLGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPPGQLGPEGDEGPMGPPGVPGVEGQPGRKGFPGRPGLDGSKGEPGDPGRPGPVGEQGLMGFIGLVGEPGIVGEKGDRGVMGPPGAPGPKGSMGHPGMPGGIGDPGEPGSRGPPGPRGPPGMRGAKGHRGPRGPDGPAGEQGSKGLKGRVGPRGRPGQPGQQGAAGERGHSGARGFLGIPGPSGPPGAKGLPGEPGSQGPQGPVGPPGEMGPKGPPGAVGEPGLPGDSGMKGDLGPLGPPGEQGLIGQRGEPGLEGDLGPMGPDGLKGDKGDPGPDGERGEKGQEGLKGEDGLPGPPGITGIRGPEGKPGKQGEKGQMGAKGAKGYQGQLGEMGTPGDPGPPGTPGPKGSRGTLGPMGAPGRMGAQGEPGLAGYNGHKGITGPLGPPGPKGQKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGQPGPKGSKGEEGPKGKPGKTGASGRRGTQGLQGLPGPRGVVGRQGPEGMDGPDGTPGRDGRPGYQGQQGDDGTPGPIGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGSPGKRGTEGGTGLPGNQGEPGSKGQPGDSGEMGFPGVAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPPGMLGPSGLPGPKGDRGSRGDWGLQGPKGPPGPRGRPGPPGPPWHPVQFQQDDLGAAFQTWMDAHRAVRPEQGYSYPDQLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQRMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAVSRVQMNFLHLLSSEGTQHITIHCLNLTVWQEGPGRPSARQAVRFRAWNGQVFEAGGQFRPEVSVDGCKVHDGRWHQTLFTFRTQDPQQLPIVSVDNLPPVSSGKQYRLEVGPACFL", "length": 1861 }, "evidence": [ { "id": "F1SN69", "url": "https://omabrowser.org/oma/group/F1SN69/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5QNQ9-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "Col27a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGTGFARGARGTAASGPGGGFLFAWILVSFTCHLASTQGAPEDVDVLQRLGLSWTKAGGGRSPTPPGVIPFPSGFIFTQRAKLQAPTANVLPTTLGRELALVLSLCSHRVNHAFLFAIRSRKHKLQLGLQFLPGRTIIHLGPRQSVAFDLDVHDGRWHHLALELRGRTVTMVTACGQHRVPVPLPSRRDSMLDPQGSFLLGKVNPRAVQFEGALCQFSIHPVAQVAHNYCAHLRERCRQVDTYSPQVGTLFPWDSGPAFALHPEPALLGLGNLTRTPATLGARPVSRALAVTLAPAMPTKPLRTVHPDVSEHSSSQTPLSPAKQSARKTPSPSSSASLANSTRVYRPAAAQPRQITTTSPTKRSPTKPSVSPLSVTPMKSPHATQKTGVPSFTKPVPPTQKPAPFTSYLAPSKASSPTVRPVQKTFMTPRPPVPSPQPLRPTTGLSKKFTNPTVAKSKSKTTSWASKPVLARSSVPKTLQQTVLSQSPVSYLGSQTLAPALPPLGVGNPRTMPPTRDSALTPAGSKKFTGRETSKKTRQKSSPRKPEPLSPGKSARDASPRDLTTKPSRPSTPALVLAPAYLLSSSPQPTSSSFPFFHLLGPTPFPMLMGPPGSKGDCGLPGPPGLPGLPGSPGARGPRGPPGPYGNPGPPGPPGAKGQKGDPGLSPGQAHDGAKGNMGLPGLSGNPGPLGRKGHKGHPGAAGHPGEQGQPGPEGSPGAKGYPGRQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGEMGRPGFPGDFGERGPPGLDGNPGEIGLPGPPGVLGLIGDTGALGPVGYPGPKGMKGLMGGVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSHGLPGLPGGRGKPGPLGKAGDKGSLGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPPGQLGPEGDEGPMGPPGVPGLEGQPGRKGFPGRPGLDGSKGEPGDPGRPGPVGEQGLMGFIGLVGEPGIVGEKGDRGVMGPPGAPGPKGSMGHPGTPGGIGNPGEPGPWGPPGSRGLPGMRGAKGHRGPRGPDGPAGEQGSKGLKGRVGPRGRPGQPGQQGAAGERGHSGAKGFLGIPGPSGPPGAKGLPGEPGSQGPQGPVGPPGEMGPKGPPGAVGEPGLPGDSGMKGDLGPLGPPGEQGLIGQRGEPGLEGDHGPVGPDGLKGDRGDPGPDGEHGEKGQEGLKGEDGSPGPPGITGVPGREGKPGKQGEKGQRGAKGAKGHQGYLGEMGIPGEPGPPGTPGPKGSRGTLGPTGAPGRMGAQGEPGLAGYNGHKGITGPLGPPGPKGEKGDQGEDGKTEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGEPGQQGQPGHPGPRGRPGPKGSKGEEGPKGKPGKAGPSGRRGTQGLQGLPGPRGVVGRQGPEGTAGSDGIPGRDGRPGYQGDQGNDGDPGPVGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQPGDSGEMGFPGVAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPPGMLGPSGLPGPKGDRGSRGDLGLQGPRGPPGPRGRPGPPGPPWHPIQFQQDDLGAAFQTWMDAQGAVRSEGYSYPDQLALDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQRMADGTYWVDPNLGCSSDTIEVSCNFTQGGQTCLKPITASKAEFAVSRVQMNFLHLLSSEGTQHITIHCLNMTVWQEGPGRSSARQAVRFRAWNGQVFEAGGQFRPEVSMDGCKVHDGRWHQTLFTFRTQDPQQLPIVSVDNLPPVSSGKQYRLEVGPACFL", "length": 1845 }, "evidence": [ { "id": "F1SN69", "url": "https://omabrowser.org/oma/group/F1SN69/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80ZF0-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "Col27a1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLARATAGLGPCCPPAPALLGAGLRWGGFLFAWILVSFSCHLASTQGAPEDVDVLQRLGLSWTKAGGGRSPAPPGVIPFPSGFIFTQRAKLQAPTTNVLPTTLGRELALVLSLCSHRVNHAFLFAIRSRKHRLQLGLQFLPGRTLVHLGPRQSVAFDLDVHDGRWHHLALELRGRTVTLVTACGQHRVPVPLPSRRDSMLDPQGSFLLGKMNPRAVQFEGALCQFSIHPVAQVAHNYCAHLRERCRQVDTYGPQVGALFPWDSGPAFALHPEPALLGLGNLTRNPATLGSRPISRGLMVTMAPAVPTKPLRMVHQDVSKLGSSQTPLVPAKQSARKTPSPFPSAALANSTRVFHSAPAQPRQITATSPTKRPPTKPSVSSLSVTPMKSPQAIQKAGTPSFSRPIPTTQKPTPLTSHPSPSKVSSATVRPVQKTFMTPQPPTLSPQALHPITGLPKKFTIPTVAKPQSKMTSWASKPVLARTNVPKALEQTVVAQSSVSYLGSQTLATALPPLGVGNSRMMPSTRDSTSTPAGSKKITGLEASKKTRHKSSPRKPIPLSSGKTARDASPRDLTTKPSQLSTPALVLAPAHLLSSSPQPTSSSFSFFHLPEPTPFLMLMGPPGSKGDCGLPGPPGLPGLPGSPGPRGPRGPPGPFGNPGLPGPPGAKGQKGDPGLSPGQAHDGAKGNMGLPGLAGNPGPMGRKGHKGHPGAAGHPGEQGQPGPEGSPGAKGYPGRQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGIPGKRGEMGRPGFPGDFGERGPPGLDGNPGEIGLPGPPGVLGLLGDMGALGPVGYPGPKGMKGLMGGVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSHGLPGFPGARGKPGPMGKAGDKGSLGLPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPPGQLGPEGDEGPMGPPGVPGLEGQPGRKGFPGRPGLDGSKGEPGDPGRPGPVGEQGLMGFVGLVGEPGIVGEKGDRGVMGPPGAPGPKGSMGHPGTPGGVGDPGEPGPWGPPGSRGLPGMRGAKGHRGPRGPDGPAGEQGSKGLKGRVGPRGRPGQPGQQGAAGERGHSGAKGFLGIPGPSGPPGAKGLPGEPGSQGPQGPVGPPGEMGPKGPPGAVGEPGLPGDSGMKGDLGPLGPPGEQGLIGQRGEPGLEGDLGPVGPDGLKGDRGDPGPDGEHGEKGQEGLKGEEGLPGPPGITGVRGREGKPGSQGEKGQRGAKGAKGYQGQLGEMGIPGDPGPPGTPGPKGSRGTLGPMGAPGRMGAQGEPGLAGYNGHKGITGPLGPPGPKGEKGEQGEDGKTEGAPGPPGERGPVGDRGDRGEPGDPGYPGQEGVQGLRGEPGQQGQPGHPGPRGRPGPKGSKGEEGPKGKPGKAGASGRRGTQGLQGLPGPRGVVGRQGPEGMAGQDGNPGRDGRPGYQGEQGNDGDPGPVGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGNQGEPGSKGQPGDSGEMGFPGVAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPPGMLGPSGLPGPKGDRGSRGDWGLQGPRGPPGPRGRPGPPGPPWHPVQFQQDDLEAAFQTWMDAHGAVRLEQGYSYPDQLMLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMADGIYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKAEFAVSRVQMNFLHLLSSEGTQHITIHCLNMTVWQEGPARPSARQAVRFRAWNGQVFEAGGQFRPEVSMDGCKVHDGRWHQTLFTFRTQDPQQLPIVSVDNLPPVSSGKQYRLEVGPACFL", "length": 1855 }, "evidence": [ { "id": "F1SN69", "url": "https://omabrowser.org/oma/group/F1SN69/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8IZC6-1", "protein_name": "Collagen alpha-1(XXVII) chain", "gene_name": "COL27A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGAGSARGARGTAAAAAARGGGFLFSWILVSFACHLASTQGAPEDVDILQRLGLSWTKAGSPAPPGVIPFQSGFIFTQRARLQAPTGTVIPAALGTELALVLSLCSHRVNHAFLFAVRSQKRKLQLGLQFLPGKTVVHLGSRRSVAFDLDMHDGRWHHLALELRGRTVTLVTACGQRRVPVLLPFHRDPALDPGGSFLFGKMNPHAVQFEGALCQFSIYPVTQVAHNYCTHLRKQCGQADTYQSPLGPLFSQDSGRPFTFQSDLALLGLENLTTATPALGSLPAGRGPRGTVAPATPTKPQRTSPTNPHQHMAVGGPAQTPLLPAKLSASNALDPMLPASVGGSTRTPRPAAAQPSQKITATKIPKSLPTKPSAPSTSIVPIKSPHPTQKTAPSSFTKSALPTQKQVPPTSRPVPARVSRPAEKPIQRNPGMPRPPPPSTRPLPPTTSSSKKPIPTLARTEAKITSHASKPASARTSTHKPPPFTALSSSPAPTPGSTRSTRPPATMVPPTSGTSTPRTAPAVPTPGSAPTGSKKPIGSEASKKAGPKSSPRKPVPLRPGKAARDVPLSDLTTRPSPRQPQPSQQTTPALVLAPAQFLSSSPRPTSSGYSIFHLAGSTPFPLLMGPPGPKGDCGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGDMGLPGLSGNPGPPGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERGPPGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSGDPGFQGDKGSQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFIGLVGEPGIVGEKGDRGMMGPPGVPGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVAGERGHLGSRGFPGIPGPSGPPGTKGLPGEPGPQGPQGPIGPPGEMGPKGPPGAVGEPGLPGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGPMGPDGLKGDRGDPGPDGEHGEKGQEGLMGEDGPPGPPGVTGVRGPEGKSGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGSRGSLGPTGAPGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGPRGWPGPKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGRTGLPGNQGEPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGPPGGPIQLQQDDLGAAFQTWMDTSGALRPESYSYPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAISRVQMNFLHLLSSEVTQHITIHCLNMTVWQEGTGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSMDGCKVQDGRWHQTLFTFRTQDPQQLPIISVDNLPPASSGKQYRLEVGPACFL", "length": 1860 }, "evidence": [ { "id": "F1SN69", "url": "https://omabrowser.org/oma/group/F1SN69/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69" } ], "pmid": "" }, { "name": "skeletal system development", "id": "GO:0001501", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001501", "evidence": [ { "database": "UniProtKB", "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69" } ], "pmid": "" }, { "name": "fibrillar collagen trimer", "id": "GO:0005583", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005583", "evidence": [ { "database": "UniProtKB", "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69" } ], "pmid": "" }, { "name": "extracellular matrix structural constituent conferring tensile strength", "id": "GO:0030020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030020", "evidence": [ { "database": "UniProtKB", "id": "F1SN69", "url": "https://www.uniprot.org/uniprotkb/F1SN69" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1706, "end_pos": 1708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1752, "end_pos": 1754, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SN69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN69" }, { "id": "PS51461", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51461" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrillar collagen NC1", "eco_id": "ECO_0000259", "start_pos": 1643, "end_pos": 1843, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 297, 425, 600, 1056, 1157, 1262 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1706, "end_pos": 1708 }, { "start_pos": 1752, "end_pos": 1754 }, { "start_pos": 272, "end_pos": 274 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SN81-1", "uniprot_ac": "F1SN81", "uniprot_id": "F1SN81_PIG", "mass": { "chemical_mass": 80182.0, "monoisotopic_mass": 80182.0 }, "refseq": {}, "gene_names": [ { "name": "EGFLAM", "type": "recommended", "evidence": [ { "id": "F1SN81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ] } ], "protein_names": [ { "name": "Pikachurin", "type": "recommended", "evidence": [ { "id": "F1SN81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN81/entry#names_and_taxonomy" } ] }, { "name": "EGF-like, fibronectin type-III and laminin G-like domain-containing protein", "type": "synonym", "evidence": [ { "id": "F1SN81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN81/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Involved in both the retinal photoreceptor ribbon synapse formation and physiological functions of visual perception. Plays a key role in the synaptic organization of photoreceptors by mediating transsynaptic interaction between alpha-dystroglycan and GPR179 on the postsynaptic membrane. Necessary for proper bipolar dendritic tip apposition to the photoreceptor ribbon synapse. Promotes matrix assembly and cell adhesiveness.", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81#function" }, { "database": "UniProtKB", "id": "ARBA00059801", "url": "https://www.uniprot.org/uniprotkb/ARBA00059801#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EGFLAM", "url": "https://www.uniprot.org/uniprotkb/F1SN81", "locus": { "chromosome": "16", "start_pos": 23606924, "end_pos": 23509491, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016848", "url": "https://www.ensembl.org/id/ENSSSCG00000016848" } ] } } ], "crossref": [ { "id": "F1SN81", "url": "https://alphafold.ebi.ac.uk/entry/F1SN81", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016848", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016848", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00110", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00110", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15036:SF88", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15036:SF88", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00054", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00054", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SN81-1", "url": "https://www.uniprot.org/uniprotkb/F1SN81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTDTEGGEDGDGFEDDLDLDISFEEVKPLPAIKERNKNFLVESKMAPRSNPMTISRLVPPTPASLPMTTVVPQPTPVERKGKTGVALMPRLFDMSCDETLCSADSFCVNDYTWGGSRCHCNLGKGGESCSEDIVIQYPQFFGHSYVTFEPLKNSYQAFQITLEFRAEAEDGLLLYCGENEHGRGDFMALAIIRRSLQFRFNCGTGVAIITSETKIKLGAWHTVTLYRDGLNGLLQLNNGTPVTGQSQGQYSKITFRTPLYVGGAPSVYWLVRATGTNRGFQGCVQSLTVNGKRMDLRPWPLGKALSGADVGECSSGICDEASCINGGTCTASKADTYICLCPLGFRGRHCEDAFTLTIPQFRESLRSYAATPWPLEPRHYLSFMEFEMTFRPDSEDGVLLYSYDTGSKDFLSITMAGGHVEFRFDCGSGTGVLRSEEPLSLGHWHDLHVSRTARNGILQVDKQKVVEGMAEGGFTQIKCNSDIFIGGVPSYDDVKKNSGVFKPFSGSIQKIILNDRTIHVKHDFTWGVNVENAAHPCVGSPCAHGGSCRPRKEGYECDCPLGFEGLHCQKAITEAIEIPQFIGRSYLTYDNPAILKRVSGSRSNAFMRFKTTAKDGLLMWRGDSPMRPNSDFISLGLRDGALVFRDGQSGKITVDDYGARTGKSPGMMRQLNINGALYVGGMKEIALHTNRQYMRGLVGCISHFTLSTDYHIALVEDAVDGKNINTCGAK", "length": 730, "header": "tr|F1SN81-1|F1SN81_PIG Isoform 1 of Pikachurin OS=Sus scrofa OX=9823 GN=EGFLAM PE=4 SV=5 CANONICAL=F1SN81-1" }, "isoforms": [ { "isoform_ac": "F1SN81-1", "url": "https://www.uniprot.org/uniprotkb/F1SN81/entry#F1SN81-1", "sequence": { "sequence": "MTDTEGGEDGDGFEDDLDLDISFEEVKPLPAIKERNKNFLVESKMAPRSNPMTISRLVPPTPASLPMTTVVPQPTPVERKGKTGVALMPRLFDMSCDETLCSADSFCVNDYTWGGSRCHCNLGKGGESCSEDIVIQYPQFFGHSYVTFEPLKNSYQAFQITLEFRAEAEDGLLLYCGENEHGRGDFMALAIIRRSLQFRFNCGTGVAIITSETKIKLGAWHTVTLYRDGLNGLLQLNNGTPVTGQSQGQYSKITFRTPLYVGGAPSVYWLVRATGTNRGFQGCVQSLTVNGKRMDLRPWPLGKALSGADVGECSSGICDEASCINGGTCTASKADTYICLCPLGFRGRHCEDAFTLTIPQFRESLRSYAATPWPLEPRHYLSFMEFEMTFRPDSEDGVLLYSYDTGSKDFLSITMAGGHVEFRFDCGSGTGVLRSEEPLSLGHWHDLHVSRTARNGILQVDKQKVVEGMAEGGFTQIKCNSDIFIGGVPSYDDVKKNSGVFKPFSGSIQKIILNDRTIHVKHDFTWGVNVENAAHPCVGSPCAHGGSCRPRKEGYECDCPLGFEGLHCQKAITEAIEIPQFIGRSYLTYDNPAILKRVSGSRSNAFMRFKTTAKDGLLMWRGDSPMRPNSDFISLGLRDGALVFRDGQSGKITVDDYGARTGKSPGMMRQLNINGALYVGGMKEIALHTNRQYMRGLVGCISHFTLSTDYHIALVEDAVDGKNINTCGAK", "length": 730, "header": "tr|F1SN81-1|F1SN81_PIG Isoform 1 of Pikachurin OS=Sus scrofa OX=9823 GN=EGFLAM PE=4 SV=5 CANONICAL=F1SN81-1" }, "locus": { "chromosome": "16", "start_pos": 23605903, "end_pos": 23544311, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018347.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018347.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017851.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017851.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 61, "start_aa": "Thr", "end_pos": 61, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr61", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 75, "start_aa": "Thr", "end_pos": 75, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr75", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "glycosaminoglycan binding", "id": "GO:0005539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005539", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "presynaptic active zone", "id": "GO:0048786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048786", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "synaptic cleft", "id": "GO:0043083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043083", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "interstitial matrix", "id": "GO:0005614", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005614", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "photoreceptor ribbon synapse", "id": "GO:0098684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098684", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "trans-synaptic protein complex", "id": "GO:0098820", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098820", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" }, { "name": "synapse assembly", "id": "GO:0007416", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007416", "evidence": [ { "database": "UniProtKB", "id": "F1SN81", "url": "https://www.uniprot.org/uniprotkb/F1SN81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SN81-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 730, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SN81-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SN81" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SN81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN81" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 130, "start_aa": "Phe", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SN81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SN81" }, { "id": "PS50025", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50025" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin G", "eco_id": "ECO_0000259", "start_pos": 135, "end_pos": 313, "start_aa": "Ile", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 61, 75 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 238, "end_pos": 240 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNB6-1", "uniprot_ac": "F1SNB6", "uniprot_id": "F1SNB6_PIG", "mass": { "chemical_mass": 15758.0, "monoisotopic_mass": 15758.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Small ribosomal subunit protein eS24", "type": "recommended", "evidence": [ { "id": "F1SNB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNB6/entry#names_and_taxonomy" } ] }, { "name": "40S ribosomal protein S24", "type": "synonym", "evidence": [ { "id": "F1SNB6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNB6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNB6", "url": "https://www.uniprot.org/uniprotkb/F1SNB6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SNB6", "locus": {} } ], "crossref": [ { "id": "F1SNB6", "url": "https://alphafold.ebi.ac.uk/entry/F1SNB6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016837", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016837", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001976", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001976", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012678", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012678", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10496", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10496", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SNB6", "url": "https://www.uniprot.org/uniprotkb/F1SNB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNB6-1", "url": "https://www.uniprot.org/uniprotkb/F1SNB6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "ILATFMNDTVTMWTRKLMTNPLLQQKQTVINVLYPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFDGGKTTSFGMIYDSLDYAKKNEPKHRLATQDLYEKKKTPRKQRKERKNRMKKVRGTAKANVGAGKKE", "length": 136, "header": "tr|F1SNB6-1|F1SNB6_PIG Isoform 1 of Small ribosomal subunit protein eS24 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SNB6-1" }, "isoforms": [ { "isoform_ac": "F1SNB6-1", "url": "https://www.uniprot.org/uniprotkb/F1SNB6/entry#F1SNB6-1", "sequence": { "sequence": "ILATFMNDTVTMWTRKLMTNPLLQQKQTVINVLYPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFDGGKTTSFGMIYDSLDYAKKNEPKHRLATQDLYEKKKTPRKQRKERKNRMKKVRGTAKANVGAGKKE", "length": 136, "header": "tr|F1SNB6-1|F1SNB6_PIG Isoform 1 of Small ribosomal subunit protein eS24 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SNB6-1" }, "locus": { "chromosome": "16", "start_pos": 21553843, "end_pos": 21553200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018332.3", "url": "https://www.ensembl.org/id/ENSSSCT00000018332.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017836.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017836.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNB6", "url": "https://www.uniprot.org/uniprotkb/F1SNB6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "F1SNB6", "url": "https://www.uniprot.org/uniprotkb/F1SNB6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1SNB6", "url": "https://www.uniprot.org/uniprotkb/F1SNB6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic small ribosomal subunit", "id": "GO:0022627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022627", "evidence": [ { "database": "UniProtKB", "id": "F1SNB6", "url": "https://www.uniprot.org/uniprotkb/F1SNB6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNB6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 136, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNB6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNB6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNC5-1", "uniprot_ac": "F1SNC5", "uniprot_id": "F1SNC5_PIG", "mass": { "chemical_mass": 42499.0, "monoisotopic_mass": 42499.0 }, "refseq": {}, "gene_names": [ { "name": "DNAJC25", "type": "recommended", "evidence": [ { "id": "F1SNC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC5" } ] } ], "protein_names": [ { "name": "DnaJ homolog subfamily C member 25", "type": "recommended", "evidence": [ { "id": "F1SNC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNC5", "url": "https://www.uniprot.org/uniprotkb/F1SNC5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNAJC25", "url": "https://www.uniprot.org/uniprotkb/F1SNC5", "locus": { "chromosome": "1", "start_pos": 252447095, "end_pos": 252426444, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005460", "url": "https://www.ensembl.org/id/ENSSSCG00000005460" } ] } } ], "crossref": [ { "id": "F1SNC5", "url": "https://alphafold.ebi.ac.uk/entry/F1SNC5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005460", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005460", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044632", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044632", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44176:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44176:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SNC5", "url": "https://www.uniprot.org/uniprotkb/F1SNC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNC5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGPLLCRGVRAAGRRWLVLLPPMLLALLLARPAGALVEGLYCGTRDCYEVLGVSRTAGKAEIARAYRQLARRYHPDRYRPEPGDEGPGWMPQSPEEAFLLVATAYETLKDEETRKDYDYMLDHPEEYYSHYYHYYSRRLAPKVDVRVVILVSVCAISVFQFFSWWNTYDKAISYLATVPKYRIQAMEIAKQQGLLRKAKEKGRNKKSKEEIRDEEENIIKNIIKSKIDIKGGCQKPQIRDLLLFQILLAPFHLCSYIVWYCRWIYKFNIKGKEYGEEERLYIIRKSMKMSQSQFDSLEDHQKETFLKRELWIKENYEVYKEEQKEELKKKLANDPRWKRYRRWMKNEGPGRLTFVDD", "length": 358, "header": "tr|F1SNC5-1|F1SNC5_PIG Isoform 1 of DnaJ homolog subfamily C member 25 OS=Sus scrofa OX=9823 GN=DNAJC25 PE=3 SV=4 CANONICAL=F1SNC5-1" }, "isoforms": [ { "isoform_ac": "F1SNC5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNC5/entry#F1SNC5-1", "sequence": { "sequence": "MAGPLLCRGVRAAGRRWLVLLPPMLLALLLARPAGALVEGLYCGTRDCYEVLGVSRTAGKAEIARAYRQLARRYHPDRYRPEPGDEGPGWMPQSPEEAFLLVATAYETLKDEETRKDYDYMLDHPEEYYSHYYHYYSRRLAPKVDVRVVILVSVCAISVFQFFSWWNTYDKAISYLATVPKYRIQAMEIAKQQGLLRKAKEKGRNKKSKEEIRDEEENIIKNIIKSKIDIKGGCQKPQIRDLLLFQILLAPFHLCSYIVWYCRWIYKFNIKGKEYGEEERLYIIRKSMKMSQSQFDSLEDHQKETFLKRELWIKENYEVYKEEQKEELKKKLANDPRWKRYRRWMKNEGPGRLTFVDD", "length": 358, "header": "tr|F1SNC5-1|F1SNC5_PIG Isoform 1 of DnaJ homolog subfamily C member 25 OS=Sus scrofa OX=9823 GN=DNAJC25 PE=3 SV=4 CANONICAL=F1SNC5-1" }, "locus": { "chromosome": "1", "start_pos": 252443788, "end_pos": 252426444, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006005.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006005.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005856.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005856.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNC5", "url": "https://www.uniprot.org/uniprotkb/F1SNC5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SNC5", "url": "https://www.uniprot.org/uniprotkb/F1SNC5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F1SNC5", "url": "https://www.uniprot.org/uniprotkb/F1SNC5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNC5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 358, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNC5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNC5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC5" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 122, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNC7-1", "uniprot_ac": "F1SNC7", "uniprot_id": "F1SNC7_PIG", "mass": { "chemical_mass": 34905.0, "monoisotopic_mass": 34905.0 }, "refseq": {}, "gene_names": [ { "name": "OR2K2", "type": "recommended", "evidence": [ { "id": "F1SNC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC7" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SNC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SNC7", "url": "https://www.uniprot.org/uniprotkb/F1SNC7#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNC7", "url": "https://www.uniprot.org/uniprotkb/F1SNC7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR2K2", "url": "https://www.uniprot.org/uniprotkb/F1SNC7", "locus": { "chromosome": "1", "start_pos": 252204103, "end_pos": 252205053, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005458", "url": "https://www.ensembl.org/id/ENSSSCG00000005458" } ] } } ], "crossref": [ { "id": "F1SNC7", "url": "https://alphafold.ebi.ac.uk/entry/F1SNC7", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156374", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156374", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SNC7", "url": "https://www.orthodb.org/?gene=F1SNC7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SNC7", "url": "https://www.uniprot.org/uniprotkb/F1SNC7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNC7-1", "url": "https://www.uniprot.org/uniprotkb/F1SNC7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGGNLTNWGFFFLEGFSRYPKLEIALFVFSLVMYLTTLLGNSTLILITILDARLRTPMYLFLGNLSFMDICYTSASVPTLLVNLLSAQKTILFSGCAVQMYLSLAMGSTECVLLAVMAYDRYVAICNPLRYPVIMNRQVCVQMATASWATGSLTALLETSFALQVPLCGNLIDHFTCEILAVLKLACTSSLLMDMILLVVSVLLLPIPMLLICISYVFILSTILRISSAEGRSKAFSTCGAHLTVVILYYGAALSMYLKPSSSGSQERDKIIAFLYGMITPTLNPIIYSLRNKEVKDAVKKMLGKMSSHHTQEHL", "length": 316, "header": "tr|F1SNC7-1|F1SNC7_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR2K2 PE=3 SV=4 CANONICAL=F1SNC7-1" }, "isoforms": [ { "isoform_ac": "F1SNC7-1", "url": "https://www.uniprot.org/uniprotkb/F1SNC7/entry#F1SNC7-1", "sequence": { "sequence": "MQGGNLTNWGFFFLEGFSRYPKLEIALFVFSLVMYLTTLLGNSTLILITILDARLRTPMYLFLGNLSFMDICYTSASVPTLLVNLLSAQKTILFSGCAVQMYLSLAMGSTECVLLAVMAYDRYVAICNPLRYPVIMNRQVCVQMATASWATGSLTALLETSFALQVPLCGNLIDHFTCEILAVLKLACTSSLLMDMILLVVSVLLLPIPMLLICISYVFILSTILRISSAEGRSKAFSTCGAHLTVVILYYGAALSMYLKPSSSGSQERDKIIAFLYGMITPTLNPIIYSLRNKEVKDAVKKMLGKMSSHHTQEHL", "length": 316, "header": "tr|F1SNC7-1|F1SNC7_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR2K2 PE=3 SV=4 CANONICAL=F1SNC7-1" }, "locus": { "chromosome": "1", "start_pos": 252205053, "end_pos": 252204106, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006003.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006003.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005854.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005854.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNC7", "url": "https://www.uniprot.org/uniprotkb/F1SNC7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156374", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156374", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SNC7", "url": "https://www.uniprot.org/uniprotkb/F1SNC7" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SNC7", "url": "https://www.uniprot.org/uniprotkb/F1SNC7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SNC7", "url": "https://www.uniprot.org/uniprotkb/F1SNC7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SNC7", "url": "https://www.uniprot.org/uniprotkb/F1SNC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNC7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 316, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNC7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNC7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC7" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 42, "end_pos": 44 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNC8-1", "uniprot_ac": "F1SNC8", "uniprot_id": "F1SNC8_PIG", "mass": { "chemical_mass": 41184.0, "monoisotopic_mass": 41184.0 }, "refseq": { "ac": "XP_020924708", "name": "lysophosphatidic acid receptor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924708" }, "gene_names": [ { "name": "LPAR1", "type": "recommended", "evidence": [ { "id": "F1SNC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ] }, { "name": "LPAR1", "type": "synonym", "evidence": [ { "id": "XP_020924708", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924708" } ] } ], "protein_names": [ { "name": "Lysophosphatidic acid receptor 1", "type": "recommended", "evidence": [ { "id": "F1SNC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC8/entry#names_and_taxonomy" } ] }, { "name": "Lysophosphatidic acid receptor Edg-2", "type": "synonym", "evidence": [ { "id": "F1SNC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC8/entry#names_and_taxonomy" } ] }, { "name": "lysophosphatidic acid receptor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020924708", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924708" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LPAR1", "url": "https://www.uniprot.org/uniprotkb/F1SNC8", "locus": {} } ], "crossref": [ { "id": "F1SNC8", "url": "https://alphafold.ebi.ac.uk/entry/F1SNC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005457", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005457", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15344", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15344", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512581", "url": "https://www.ncbi.nlm.nih.gov/gene/100512581", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004065", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004065", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CQRQENI", "url": "https://omabrowser.org/oma/group/CQRQENI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SNC8", "url": "https://www.orthodb.org/?gene=F1SNC8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22750", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22750", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-419408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-419408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020924708", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020924708", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAFTSMPVISQPQFTAMNEPQCFYNESIAFFYNRSGKYLATEWNTVSKLVMGLGITVCIFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIEHCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCCPQCDVLAYEKFFLLLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRSENTSGPTEGSDRSASSLNHTILAGVHSNDHSVV", "length": 364, "header": "tr|F1SNC8-1|F1SNC8_PIG Isoform 1 of Lysophosphatidic acid receptor 1 OS=Sus scrofa OX=9823 GN=LPAR1 PE=3 SV=3 CANONICAL=F1SNC8-1" }, "isoforms": [ { "isoform_ac": "F1SNC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNC8/entry#F1SNC8-1", "sequence": { "sequence": "MAAAFTSMPVISQPQFTAMNEPQCFYNESIAFFYNRSGKYLATEWNTVSKLVMGLGITVCIFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIEHCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCCPQCDVLAYEKFFLLLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRSENTSGPTEGSDRSASSLNHTILAGVHSNDHSVV", "length": 364, "header": "tr|F1SNC8-1|F1SNC8_PIG Isoform 1 of Lysophosphatidic acid receptor 1 OS=Sus scrofa OX=9823 GN=LPAR1 PE=3 SV=3 CANONICAL=F1SNC8-1" }, "locus": { "chromosome": "1", "start_pos": 251908749, "end_pos": 251813788, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047545.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047545.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048127.1", "url": "https://www.ensembl.org/id/ENSSSCP00000048127.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 338, "start_aa": "Thr", "end_pos": 338, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr338", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-419408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-419408", "resource": "Reactome", "description": "Lysosphingolipid and LPA receptors" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M9C6-1", "protein_name": "Lysophosphatidic acid receptor 1", "gene_name": "LPAR1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAFTSSPVVSQPQFTAMNEPQCFYNESIAFFYNRSGKYLATEWNTVSKLVMGLGITVCIFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIENCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCCPQCDVLAYEKFFLLLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRSENTSGPTEGSDRSASSLNHTILAGVHSNDHSVV", "length": 364 }, "evidence": [ { "id": "F1SNC8", "url": "https://omabrowser.org/oma/group/F1SNC8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HUC7-1", "protein_name": "Lysophosphatidic acid receptor 1", "gene_name": "Lpar1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAASTSSPVISQPQFTAMNEPQCFYNESIAFFYNRSGKYLATEWNTVSKLVMGLGITVCVFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIDHCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLLKTVVIVLGAFIVCWTPGLVLLLLDVCCPQCNVLAYEKFFLLLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRNENPNGPTEGSDRSASSLNHTILAGVHSNDHSVV", "length": 364 }, "evidence": [ { "id": "F1SNC8", "url": "https://omabrowser.org/oma/group/F1SNC8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P61793-1", "protein_name": "Lysophosphatidic acid receptor 1", "gene_name": "Lpar1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAASTSSPVISQPQFTAMNEQQCFYNESIAFFYNRSGKYLATEWNTVSKLVMGLGITVCVFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIDHCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLLKTVVIVLGAFIVCWTPGLVLLLLDVCCPQCDVLAYEKFFLLLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRNENPNGPTEGSDRSASSLNHTILAGVHSNDHSVV", "length": 364 }, "evidence": [ { "id": "F1SNC8", "url": "https://omabrowser.org/oma/group/F1SNC8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61794-1", "protein_name": "Lysophosphatidic acid receptor 1", "gene_name": "Lpar1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAASTSSPVISQPQFTAMNEQQCFYNESIAFFYNRSGKYLATEWNTVSKLVMGLGITVCVFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIDHCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLLKTVVIVLGAFIVCWTPGLVLLLLDVCCPQCDVLAYEKFFLLLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRNENPNGPTEGSDRSASSLNHTILAGVHSNDHSVV", "length": 364 }, "evidence": [ { "id": "F1SNC8", "url": "https://omabrowser.org/oma/group/F1SNC8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q92633-1", "protein_name": "Lysophosphatidic acid receptor 1", "gene_name": "LPAR1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAISTSIPVISQPQFTAMNEPQCFYNESIAFFYNRSGKHLATEWNTVSKLVMGLGITVCIFIMLANLLVMVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLLAIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIENCSNMAPLYSDSYLVFWAIFNLVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLLKTVVIVLGAFIICWTPGLVLLLLDVCCPQCDVLAYEKFFLLLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRSENPTGPTEGSDRSASSLNHTILAGVHSNDHSVV", "length": 364 }, "evidence": [ { "id": "F1SNC8", "url": "https://omabrowser.org/oma/group/F1SNC8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "adenylate cyclase-activating G protein-coupled receptor signaling pathway", "id": "GO:0007189", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007189", "evidence": [ { "database": "UniProtKB", "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ], "pmid": "" }, { "name": "neurogenesis", "id": "GO:0022008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022008", "evidence": [ { "database": "UniProtKB", "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "lysophosphatidic acid receptor activity", "id": "GO:0070915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070915", "evidence": [ { "database": "UniProtKB", "id": "F1SNC8", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNC8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNC8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNC8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNC8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 311, "start_aa": "Ala", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 338 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 27, "end_pos": 29 }, { "start_pos": 333, "end_pos": 335 }, { "start_pos": 349, "end_pos": 351 }, { "start_pos": 35, "end_pos": 37 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SND4-1", "uniprot_ac": "F1SND4", "uniprot_id": "F1SND4_PIG", "mass": { "chemical_mass": 41508.0, "monoisotopic_mass": 41508.0 }, "refseq": {}, "gene_names": [ { "name": "BRIX1", "type": "recommended", "evidence": [ { "id": "F1SND4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SND4" } ] } ], "protein_names": [ { "name": "Ribosome biogenesis protein BRX1 homolog", "type": "recommended", "evidence": [ { "id": "F1SND4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SND4/entry#names_and_taxonomy" } ] }, { "name": "Brix domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "F1SND4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SND4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Required for biogenesis of the 60S ribosomal subunit.", "evidence": [ { "database": "UniProtKB", "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4#function" }, { "database": "UniProtKB", "id": "ARBA00003439", "url": "https://www.uniprot.org/uniprotkb/ARBA00003439#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BRIX1", "url": "https://www.uniprot.org/uniprotkb/F1SND4", "locus": { "chromosome": "16", "start_pos": 20522181, "end_pos": 20512280, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016827", "url": "https://www.ensembl.org/id/ENSSSCG00000016827" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016827", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016827", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026532", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026532", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YRHRHLM", "url": "https://omabrowser.org/oma/group/YRHRHLM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13634", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13634", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13634:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13634:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04427", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04427", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SND4-1", "url": "https://www.uniprot.org/uniprotkb/F1SND4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGSKMAATKRKRRGGPAGPAKKLKRSEKDAKPPAKSSEVAEEAEEEDRNRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYKEKQQVKDVQKLRKKEPKTILPHDPTADVFVTPAEEKPVEIQWVKPEPKVDLKARKKRIYKRQRKMKQKMSSGNAK", "length": 358, "header": "tr|F1SND4-1|F1SND4_PIG Isoform 1 of Ribosome biogenesis protein BRX1 homolog OS=Sus scrofa OX=9823 GN=BRIX1 PE=3 SV=2 CANONICAL=F1SND4-1" }, "isoforms": [ { "isoform_ac": "F1SND4-1", "url": "https://www.uniprot.org/uniprotkb/F1SND4/entry#F1SND4-1", "sequence": { "sequence": "MAGSKMAATKRKRRGGPAGPAKKLKRSEKDAKPPAKSSEVAEEAEEEDRNRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYKEKQQVKDVQKLRKKEPKTILPHDPTADVFVTPAEEKPVEIQWVKPEPKVDLKARKKRIYKRQRKMKQKMSSGNAK", "length": 358, "header": "tr|F1SND4-1|F1SND4_PIG Isoform 1 of Ribosome biogenesis protein BRX1 homolog OS=Sus scrofa OX=9823 GN=BRIX1 PE=3 SV=2 CANONICAL=F1SND4-1" }, "locus": { "chromosome": "16", "start_pos": 20520400, "end_pos": 20512301, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018322.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018322.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017826.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017826.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 314, "start_aa": "Thr", "end_pos": 314, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr314", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F1NSS7-1", "protein_name": "Ribosome biogenesis protein BRX1 homolog", "gene_name": "BRIX1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAAKRKRELGPAARPKKRAKGAPTGPGPTAKAGPEGAAPEEYSIPAPVSQGKWKNKERVLIFSSRGINFRTRHLMQDLRTLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIFFEAKKKQDLYMWLSNTPQGPSAKFLVQNIHTLAELKMTGNCLRGSRPLLSFDPTFDKEPHYALLKELFIQIFSTPQYHPKSQPFVDHVFTFTITDKRIWFRNYQIIEEDASLVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRLIRLSMAAKFREKHQVKEVQKIKKKESKMLIEEDPTEVVFETPAEEKPVEIQLVKPESKAIVKDKRKPRKIQRKKQKKLFRTEG", "length": 349 }, "evidence": [ { "id": "F1SND4", "url": "https://omabrowser.org/oma/group/F1SND4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HKF6-1", "protein_name": "Ribosome biogenesis protein BRX1 homolog", "gene_name": "Brix1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATKRKRRGGLEVQAKKPKKSRKDSGQPVKQASVEKEVKEEDRDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRIVRSITAAKYREKQQVKDVQKMRKKEPKTILPHDPTADVFDIPAEEKPVEIQWVKPEPKVDLTARKRRIYKRHRKLQQKMNRGSAK", "length": 353 }, "evidence": [ { "id": "F1SND4", "url": "https://omabrowser.org/oma/group/F1SND4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q08235-1", "protein_name": "Ribosome biogenesis protein BRX1", "gene_name": "BRX1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSSIYKALAGKSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSNDALFK", "length": 291 }, "evidence": [ { "id": "F1SND4", "url": "https://omabrowser.org/oma/group/F1SND4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3SZZ0-1", "protein_name": "Ribosome biogenesis protein BRX1 homolog", "gene_name": "BRIX1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAATKRKRRGGLAVQAKKLKRDAKDGKLPAKANDVSEEAAEEEKDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKDVQKLRKKEPKTILPHDPTADVFVTPAEEKPVEIQWVKPEPKVDLKARKKRIYKRQRKMKQKMSSGNAK", "length": 353 }, "evidence": [ { "id": "F1SND4", "url": "https://omabrowser.org/oma/group/F1SND4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8TDN6-1", "protein_name": "Ribosome biogenesis protein BRX1 homolog", "gene_name": "BRIX1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAATKRKRRGGFAVQAKKPKRNEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKDVQKLRKKEPKTLLPHDPTADVFVTPAEEKPIEIQWVKPEPKVDLKARKKRIYKRQRKMKQRMDSGKTK", "length": 353 }, "evidence": [ { "id": "F1SND4", "url": "https://omabrowser.org/oma/group/F1SND4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DCA5-1", "protein_name": "Ribosome biogenesis protein BRX1 homolog", "gene_name": "Brix1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAATKRKRRGGLEVQAKKPKRSSKDAGQPAKQADVAKEAEEENRDRIPGPVCKGKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIEEDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRERQQVKDVQKLRKKEPKTILPHDPTADVFVIPAEEKPVEIQWVKPEPKVDLKARKRRIYKRHRKLQQKMSRGSAK", "length": 353 }, "evidence": [ { "id": "F1SND4", "url": "https://omabrowser.org/oma/group/F1SND4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LE16-1", "protein_name": "Ribosome biogenesis protein BRX1 homolog 1", "gene_name": "BRIX1-1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRKRKHSETVTAAPVKDSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVTCSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHKDLYMWMVKSPGGPSVKFLVNAVHTMEELKLTGNHLKGSRPLLTFSSNFENDAHWKLLKEMLTQIFGIPEGHRKSKPYHDHVFVFSIVDDHIWFRNYQISVPHNESDKIARGDLDKMTLIEVGPRFCLNPIKIFGGSFGGTTLYENPFYVSPNQIRALEKRNKAGKFAKKIKAKTRRKMHELSNPLEPDEFTDMWNDE", "length": 315 }, "evidence": [ { "id": "F1SND4", "url": "https://omabrowser.org/oma/group/F1SND4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VZE6-1", "protein_name": "Ribosome biogenesis protein BRX1 homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGRKFQNKKKKAAPQLEIVPLDENPPLPPQRSSDDVVPKKARKEKWVNKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKMERSKTLSVVNEMCEMKHCNKAMLFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDELPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQILSEDGGLSEVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVLKKAAKDKYVNRVEQKVKHEATRPIRAYDGMDNDELFEDDDPVETAKILAAIAKKKKEEAAKQTPKSALTKKIKEKQLQAVKDVIERKKARTIKRVKKV", "length": 359 }, "evidence": [ { "id": "F1SND4", "url": "https://omabrowser.org/oma/group/F1SND4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4" } ], "pmid": "" }, { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4" } ], "pmid": "" }, { "name": "ribosomal large subunit assembly", "id": "GO:0000027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000027", "evidence": [ { "database": "UniProtKB", "id": "F1SND4", "url": "https://www.uniprot.org/uniprotkb/F1SND4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SND4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SND4" }, { "id": "PS50833", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50833" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Brix", "eco_id": "ECO_0000259", "start_pos": 65, "end_pos": 254, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 314 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SND5-1", "uniprot_ac": "F1SND5", "uniprot_id": "F1SND5_PIG", "mass": { "chemical_mass": 31597.0, "monoisotopic_mass": 31597.0 }, "refseq": { "ac": "XP_003133926", "name": "cell cycle checkpoint protein RAD1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133926" }, "gene_names": [ { "name": "RAD1", "type": "recommended", "evidence": [ { "id": "F1SND5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SND5" } ] }, { "name": "RAD1", "type": "synonym", "evidence": [ { "id": "XP_003133926", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133926" } ] } ], "protein_names": [ { "name": "Cell cycle checkpoint protein RAD1", "type": "recommended", "evidence": [ { "id": "F1SND5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SND5/entry#names_and_taxonomy" } ] }, { "name": "cell cycle checkpoint protein RAD1", "type": "synonym", "evidence": [ { "id": "XP_003133926", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133926" } ] } ], "function": [ { "annotation": "Component of the 9-1-1 cell-cycle checkpoint response complex that plays a major role in DNA repair. The 9-1-1 complex is recruited to DNA lesion upon damage by the RAD17-replication factor C (RFC) clamp loader complex. Acts then as a sliding clamp platform on DNA for several proteins involved in long-patch base excision repair (LP-BER). The 9-1-1 complex stimulates DNA polymerase beta (POLB) activity by increasing its affinity for the 3'-OH end of the primer-template and stabilizes POLB to those sites where LP-BER proceeds; endonuclease FEN1 cleavage activity on substrates with double, nick, or gap flaps of distinct sequences and lengths; and DNA ligase I (LIG1) on long-patch base excision repair substrates. The 9-1-1 complex is necessary for the recruitment of RHNO1 to sites of double-stranded breaks (DSB) occurring during the S phase.", "evidence": [ { "database": "UniProtKB", "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5#function" }, { "database": "UniProtKB", "id": "ARBA00055414", "url": "https://www.uniprot.org/uniprotkb/ARBA00055414#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAD1", "url": "https://www.uniprot.org/uniprotkb/F1SND5", "locus": { "chromosome": "16", "start_pos": 20466889, "end_pos": 20512135, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016826", "url": "https://www.ensembl.org/id/ENSSSCG00000016826" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016826", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016826", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00577", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00577", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513318", "url": "https://www.ncbi.nlm.nih.gov/gene/100513318", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513318", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513318", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WSQAYKF", "url": "https://omabrowser.org/oma/group/WSQAYKF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SND5", "url": "https://www.orthodb.org/?gene=F1SND5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10870", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10870", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10870:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10870:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-176187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5685938", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693607", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804756", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69473", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003133926", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133926", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SND5-1", "url": "https://www.uniprot.org/uniprotkb/F1SND5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLLTQQIPDESDYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFTVQEESVTFRINLTVLLDCLSIFGSSPVPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMESFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPESES", "length": 281, "header": "tr|F1SND5-1|F1SND5_PIG Isoform 1 of Cell cycle checkpoint protein RAD1 OS=Sus scrofa OX=9823 GN=RAD1 PE=3 SV=1 CANONICAL=F1SND5-1" }, "isoforms": [ { "isoform_ac": "F1SND5-1", "url": "https://www.uniprot.org/uniprotkb/F1SND5/entry#F1SND5-1", "sequence": { "sequence": "MPLLTQQIPDESDYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFTVQEESVTFRINLTVLLDCLSIFGSSPVPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMESFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPESES", "length": 281, "header": "tr|F1SND5-1|F1SND5_PIG Isoform 1 of Cell cycle checkpoint protein RAD1 OS=Sus scrofa OX=9823 GN=RAD1 PE=3 SV=1 CANONICAL=F1SND5-1" }, "locus": { "chromosome": "16", "start_pos": 20511512, "end_pos": 20504753, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018321.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018321.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017825.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017825.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513318", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513318", "resource": "KEGG Pathway" }, { "id": "R-SSC-176187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176187", "resource": "Reactome", "description": "Activation of ATR in response to replication stress" }, { "id": "R-SSC-5685938", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685938", "resource": "Reactome", "description": "HDR through Single Strand Annealing (SSA)" }, { "id": "R-SSC-5693607", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "resource": "Reactome", "description": "Processing of DNA double-strand break ends" }, { "id": "R-SSC-6804756", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804756", "resource": "Reactome", "description": "Regulation of TP53 Activity through Phosphorylation" }, { "id": "R-SSC-69473", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "resource": "Reactome", "description": "G2/M DNA damage checkpoint" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PSK5-1", "protein_name": "Cell cycle checkpoint protein RAD1", "gene_name": "RAD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPFSTQSPASGEQYVLTASLDNARNLSSLLRAVHFQDHATCFATANGLRVTVEDAKCIQANAFIQAEIFQEFHVQEESVMFRINLAVFLDCLTIFGASSLPGTSTALRMCYRGYGHPLMLFLEEGGVVTVCRINTQEPEDLLDFNFCSTNVVNKIILQSDGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSAHLDYPKDSDLMEAFHCNQTQTNRYKISLLKPSTKALALSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPNEEITEAEL", "length": 281 }, "evidence": [ { "id": "F1SND5", "url": "https://omabrowser.org/oma/group/F1SND5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZC52-1", "protein_name": "Cell cycle checkpoint protein RAD1", "gene_name": "Rad1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLLTQYNEDEYEQYCLVASLDNVRNLSTVLKAIHFKEHATCFATKNGIKVTVENAKCVQANAFIQADVFQEFIIQEESVTFRINLTILLDCLSIFGSSPTPGTLTALRMCYQGYGHPLMLFLEEGGVVTVCKITTQEPEDTLDFDFCSTNVMNKIILQSEGLREAFSELDMTGDVLQITVSPDKPYFRLSTFGNAGNSHLDYPKDSDLVEAFHCNKTQINRYKLSLLKPSTKALALSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPES", "length": 280 }, "evidence": [ { "id": "F1SND5", "url": "https://omabrowser.org/oma/group/F1SND5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O60671-1", "protein_name": "Cell cycle checkpoint protein RAD1", "gene_name": "RAD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLLTQQIQDEDDQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPESES", "length": 282 }, "evidence": [ { "id": "F1SND5", "url": "https://omabrowser.org/oma/group/F1SND5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QWZ1-1", "protein_name": "Cell cycle checkpoint protein RAD1", "gene_name": "Rad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLLTQYNEEEYEQYCLVASLDNVRNLSTVLKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQADVFQEFVIQEESVTFRINLTILLDCLSIFGSSPTPGTLTALRMCYQGYGHPLMLFLEEGGVVTVCKITTQEPEETLDFDFCSTNVMNKIILQSEGLREAFSELDMTGDVLQITVSPDKPYFRLSTFGNAGNSHLDYPKDSDLVEAFHCDKTQVNRYKLSLLKPSTKALALSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDEEVPES", "length": 280 }, "evidence": [ { "id": "F1SND5", "url": "https://omabrowser.org/oma/group/F1SND5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VQD4-1", "protein_name": "DNA repair protein Rad1", "gene_name": "Rad1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTDVEPSPYGDCKFVARVEHIKTFIQAIKSICFNDYGMVQVSEDGLRITVEQGKSIQATLFMPPGAFMEFRVQDFQCFGVKMNVLSECLSLFGSADCSLRMMYRDKGDPLKIILYPHDDDDVSTECAIKTMDCDEPIDYDQNLKDPDLNVIFVRGPNLSKVFNELEKSAEEFEFVTSPNRPHFKITTVGIMQAVFSVEVAKTSPMMMMFNCKQTVVARYKSQQIRMTNKAMQSATKVAIKTNSVGLLELHLVMQGDSQEEIFIQFFIIPLLNTD", "length": 274 }, "evidence": [ { "id": "F1SND5", "url": "https://omabrowser.org/oma/group/F1SND5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "meiotic recombination checkpoint signaling", "id": "GO:0051598", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051598", "evidence": [ { "database": "UniProtKB", "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5" } ], "pmid": "" }, { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5" } ], "pmid": "" }, { "name": "cellular response to ionizing radiation", "id": "GO:0071479", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071479", "evidence": [ { "database": "UniProtKB", "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5" } ], "pmid": "" }, { "name": "DNA damage checkpoint signaling", "id": "GO:0000077", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000077", "evidence": [ { "database": "UniProtKB", "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5" } ], "pmid": "" }, { "name": "checkpoint clamp complex", "id": "GO:0030896", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030896", "evidence": [ { "database": "UniProtKB", "id": "F1SND5", "url": "https://www.uniprot.org/uniprotkb/F1SND5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 215, "end_pos": 217 }, { "start_pos": 25, "end_pos": 27 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNH8-1", "uniprot_ac": "F1SNH8", "uniprot_id": "F1SNH8_PIG", "mass": { "chemical_mass": 41040.0, "monoisotopic_mass": 41040.0 }, "refseq": {}, "gene_names": [ { "name": "STRA8", "type": "recommended", "evidence": [ { "id": "F1SNH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ] } ], "protein_names": [ { "name": "Stimulated by retinoic acid 8", "type": "synonym", "evidence": [ { "id": "F1SNH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNH8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STRA8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8", "locus": { "chromosome": "18", "start_pos": 14055258, "end_pos": 14080399, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016533", "url": "https://www.ensembl.org/id/ENSSSCG00000016533" } ] } } ], "crossref": [ { "id": "F1SNH8", "url": "https://alphafold.ebi.ac.uk/entry/F1SNH8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016533", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016533", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR033537", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033537", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YMQIIEF", "url": "https://omabrowser.org/oma/group/YMQIIEF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR35254", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35254", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35254:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35254:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF23175", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23175", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNH8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSGEGGNPSGRAMPRPLAQLKVLEPRVARRRLSQARHRATLAGLFSNLRKAVYFHSDLTASKWQVLNRAKAHIQELEQTLDNLLKLKESFNLEDGNANSLEEAKREYASMYSRNPSLVSNKIYRKGSDTWCPIEAVGKDPDEEEEDEEEEEEDEEEEEEEEEKKVELLHSPVTLLPDLMEFERYLNFYKQTMDLLIGNGIVSSQEVTLPIVSAAISHLWQTLSEERKASLLQAWVQKHSGLPGLAEACPEPAGAEGSVKDSGVDSQGSCSLVSTPRRILFEDAFDVASFLDKSEAPSTSSPSSVLAICNPEKPEEKFQLYMQIIDFFKGLCCVNTQFKQEPDLPVDDEMIMLRCMETFDDEDL", "length": 365, "header": "tr|F1SNH8-1|F1SNH8_PIG Isoform 1 of Stimulated by retinoic acid 8 OS=Sus scrofa OX=9823 GN=STRA8 PE=4 SV=3 CANONICAL=F1SNH8-1" }, "isoforms": [ { "isoform_ac": "F1SNH8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNH8/entry#F1SNH8-1", "sequence": { "sequence": "MATSGEGGNPSGRAMPRPLAQLKVLEPRVARRRLSQARHRATLAGLFSNLRKAVYFHSDLTASKWQVLNRAKAHIQELEQTLDNLLKLKESFNLEDGNANSLEEAKREYASMYSRNPSLVSNKIYRKGSDTWCPIEAVGKDPDEEEEDEEEEEEDEEEEEEEEEKKVELLHSPVTLLPDLMEFERYLNFYKQTMDLLIGNGIVSSQEVTLPIVSAAISHLWQTLSEERKASLLQAWVQKHSGLPGLAEACPEPAGAEGSVKDSGVDSQGSCSLVSTPRRILFEDAFDVASFLDKSEAPSTSSPSSVLAICNPEKPEEKFQLYMQIIDFFKGLCCVNTQFKQEPDLPVDDEMIMLRCMETFDDEDL", "length": 365, "header": "tr|F1SNH8-1|F1SNH8_PIG Isoform 1 of Stimulated by retinoic acid 8 OS=Sus scrofa OX=9823 GN=STRA8 PE=4 SV=3 CANONICAL=F1SNH8-1" }, "locus": { "chromosome": "18", "start_pos": 14073511, "end_pos": 14055436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018003.3", "url": "https://www.ensembl.org/id/ENSSSCT00000018003.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017519.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017519.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D4ADQ4-1", "protein_name": "Stimulated by retinoic acid 8", "gene_name": "Stra8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATPGEGNQPRDDGAPQPVPQLQQLEPRVARRRLSQARHRATLVGLFNNLRKTVYSQSDLTASKWQVLNKAKSHIQELEGSLDNLLKLKGFFNLQDGNPNTLEEVKEEYARMYSENESVFLNSFPQNSPPAWLPPEAVGPDAEEGGNDEEREVEEYQEEEEEEEEEKKVDLSHSSPTLLPDLMEFERYLNFYKQTMDLLTMNSIISAQEVTLPIVSAAISHLWQTLSEEKKARLLQVWEQQHSTFSDLTEACLELAGAEGSMKDSGVDSQGASCSLDSTPEEILFEDAFDVASFLDKSEAQRLSNISAVFASCNSENLEEKFQLYIQIIEFFKGLGCVNTPLNQEPDPPVDDDVMLLKCLETFDDEDL", "length": 368 }, "evidence": [ { "id": "F1SNH8", "url": "https://omabrowser.org/oma/group/F1SNH8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70278-1", "protein_name": "Stimulated by retinoic acid gene 8 protein", "gene_name": "Stra8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATPGEGNQPSDDGAPQPLAQLQKLEPRVVRRRLSQARHRATLVGLFNNLRKAVYSQSDITASKWQVLNRTKIHIQEQEESLDKLLKLKASFNLQDGNPNSLEEVKEEYARMYSENDSVFLNSFLQDSPPEWFPSEAVGPDAEEEGEEEGEEEGEEGEEEEEGDEEGEEEEENGEEREVEEYQEEEEEEEEEEKKVDLSHSSSTLLPDLMEFERYLNFYKQTMDLLTMNSIISAHEVTLPIVSAAISHLWQTLSEEKKARLLQVWEQQHSAFADLTEACLELAGVEGSMKDSGVDSQGASCSLESTPEEILFEDAFDVASFLDKSEAQHMSNISAMFATCNSENPEEKFQLYIQIIEFFKSLGCVNTPLNQEPEPPDDDDAMLLKCLETFDDL", "length": 393 }, "evidence": [ { "id": "F1SNH8", "url": "https://omabrowser.org/oma/group/F1SNH8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7Z7C7-1", "protein_name": "Stimulated by retinoic acid gene 8 protein homolog", "gene_name": "STRA8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGKIDVDKILFFNQEIRLWQLIMATPEENSNPHDRATPQLPAQLQELEHRVARRRLSQARHRATLAALFNNLRKTVYSQSDLIASKWQVLNKAKSHIPELEQTLDNLLKLKASFNLEDGHASSLEEVKKEYASMYSGNDSFPQNGSSPWYLNFYKQTMDLLTGSGIITPQEAALPIVSAAISHLWQNLSEERKASLRQAWAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASCSLVSTPEEILFEDAFDVASFLDKSEVPSTSSSSSVLASCNPENPEEKFQLYMQIINFFKGLSCANTQVKQEASFPVDEEMIMLQCTETFDDEDL", "length": 330 }, "evidence": [ { "id": "F1SNH8", "url": "https://omabrowser.org/oma/group/F1SNH8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "male germ-line stem cell asymmetric division", "id": "GO:0048133", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048133", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" }, { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" }, { "name": "cellular response to retinoic acid", "id": "GO:0071300", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071300", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" }, { "name": "oogenesis", "id": "GO:0048477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048477", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" }, { "name": "meiotic cell cycle", "id": "GO:0051321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051321", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" }, { "name": "activation of meiosis", "id": "GO:0090427", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090427", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SNH8", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNH8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 365, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNH8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNH8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNH8" }, { "id": "PF23175", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23175" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "STRA8 bHLH", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 93, "start_aa": "Ala", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNK8-1", "uniprot_ac": "F1SNK8", "uniprot_id": "F1SNK8_PIG", "mass": { "chemical_mass": 52972.0, "monoisotopic_mass": 52972.0 }, "refseq": { "ac": "XP_003121928", "name": "doublesex- and mab-3-related transcription factor A1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121928" }, "gene_names": [ { "name": "DMRTA1", "type": "recommended", "evidence": [ { "id": "F1SNK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ] }, { "name": "DMRTA1", "type": "synonym", "evidence": [ { "id": "XP_003121928", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121928" } ] } ], "protein_names": [ { "name": "DMRT like family A1", "type": "synonym", "evidence": [ { "id": "F1SNK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNK8/entry#names_and_taxonomy" } ] }, { "name": "doublesex- and mab-3-related transcription factor A1", "type": "synonym", "evidence": [ { "id": "XP_003121928", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121928" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DMRTA1", "url": "https://www.uniprot.org/uniprotkb/F1SNK8", "locus": { "chromosome": "1", "start_pos": 200406764, "end_pos": 200414334, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005131", "url": "https://www.ensembl.org/id/ENSSSCG00000005131" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005131", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005131", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14417", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14417", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517627", "url": "https://www.ncbi.nlm.nih.gov/gene/100517627", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001275", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001275", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026607", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026607", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036407", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036407", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517627", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517627", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RELQFMY", "url": "https://omabrowser.org/oma/group/RELQFMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SNK8", "url": "https://www.orthodb.org/?gene=F1SNK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12322", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12322", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12322:SF71", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12322:SF71", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00751", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00751", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03474", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03474", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20624", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20624", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003121928", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121928", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNK8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQSQCGSRDLSSSGRPSLAPGLVAAAPHPQSPMLPVPPGIPLPPTFLRPPSLFLRAATAATSGSGGCPQAAGLERGVGAVACSYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEAQGLQRLLYSGPSGPGGQTSGGSRRTENLQTASSSAVVTALGLSALRQASGLATPACKIFQQDYTEGKQGQKENKCDSCQSKQEEPVCKSHHSTLGSSPKSNDVIGKQNIRSSVSENLNKDDSIQSPHPGEQSGGEESPRSPSSSDLESGNESEWAKDFTAARASLPPMSSRPRDPLDILIKIFPSYRCSRLESILQFCKGDVVQAIEQVLNGKEHQTDTRDLANSGELENTAFPRASNFSLAGIGFGTLGNKSAFSPLHTTSASYGGDSSLYSLNPRLGISPLRLAYSSPGRGLSSFMSPYLTPGLVPTLPFRPALDYAFPGMIRDSSYLPSKDSVTSDRLYSRLNQDNL", "length": 497, "header": "tr|F1SNK8-1|F1SNK8_PIG Isoform 1 of DMRT like family A1 OS=Sus scrofa OX=9823 GN=DMRTA1 PE=3 SV=1 CANONICAL=F1SNK8-1" }, "isoforms": [ { "isoform_ac": "F1SNK8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNK8/entry#F1SNK8-1", "sequence": { "sequence": "MEQSQCGSRDLSSSGRPSLAPGLVAAAPHPQSPMLPVPPGIPLPPTFLRPPSLFLRAATAATSGSGGCPQAAGLERGVGAVACSYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEAQGLQRLLYSGPSGPGGQTSGGSRRTENLQTASSSAVVTALGLSALRQASGLATPACKIFQQDYTEGKQGQKENKCDSCQSKQEEPVCKSHHSTLGSSPKSNDVIGKQNIRSSVSENLNKDDSIQSPHPGEQSGGEESPRSPSSSDLESGNESEWAKDFTAARASLPPMSSRPRDPLDILIKIFPSYRCSRLESILQFCKGDVVQAIEQVLNGKEHQTDTRDLANSGELENTAFPRASNFSLAGIGFGTLGNKSAFSPLHTTSASYGGDSSLYSLNPRLGISPLRLAYSSPGRGLSSFMSPYLTPGLVPTLPFRPALDYAFPGMIRDSSYLPSKDSVTSDRLYSRLNQDNL", "length": 497, "header": "tr|F1SNK8-1|F1SNK8_PIG Isoform 1 of DMRT like family A1 OS=Sus scrofa OX=9823 GN=DMRTA1 PE=3 SV=1 CANONICAL=F1SNK8-1" }, "locus": { "chromosome": "1", "start_pos": 200414039, "end_pos": 200410298, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005657.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005657.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005516.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005516.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 200, "start_aa": "Thr", "end_pos": 200, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr200", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517627", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517627", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZIZ0-1", "protein_name": "DMRT-like family A1", "gene_name": "Dmrta1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEQFPRRDRSGGCRPHLGPGRAVAPASAARSVSSGIPVSATFLRPPGLFLRSTASAGRAGCVPGPGLDRALGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLHRLLYQGPSGPGAPASGGSGRTESPQVLSSPMTVAALGAGASRHPGSRSVPAFEVFQQDFAERKQEPKQSNCESCQSRHEEPVSNTHHRSPGSSNGNVTMEKQGFMSSISEQSDKSTIILSPCPTDQSGGEDSPRSFSSSDLESGNESEWARDYTATTASLSTVTSRPRDPLGILTRIFPGYKRSRLEGILQFCKGDVVQAIEQILNGKEHKPDCRDLAHADLENAAFQRASDFSLAGIGFGTLNNKSALSPLEAASAAYGGDSSLYSFNPRLAFSPLRLAYSSPGRALSGFMSPYLTPGLVPALPFRPTLDYAFPGMIREPPHLPSKHLVTGGRLYFRPNQEHL", "length": 488 }, "evidence": [ { "id": "F1SNK8", "url": "https://omabrowser.org/oma/group/F1SNK8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BAR8-1", "protein_name": "DMRT like family A1", "gene_name": "DMRTA1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEQSQCGSRDRSRSGPLHLAPGLVVAAPPPPSPALPVPPGIPVPPTFLRPSSLFLRAASSAGSGGCPPPAELERGVGAVAGGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLQRLLYPGPSGPGGRSSGGSSRTETSQTTSSGPATVTALGLSASRQASGLATPVFEIFQPDYIEEKQGQKESKCDSCQSGQEELGSKSHQFTLRSSPKSNDVTGKQNIRSSISENPNKDDSIQSLHPGEQSGGEESPRSLSSSDLESGNESEWAKDFTDSTASHPTVSSRPRDPLDILTKIFPSYRRSRLEGILQFCKGDVVQAIEEILNGKEHKPDTRDLANSGALENTAFPRVSNFSLAGIGFGTLGNKSAFSPLHTSSASYGGDSSLYSLNPRLGISPFRLAYSSPGRGLSGFMSPYLTPGLVPSLPCRPALDYAFSGMIRDSSYLPIKDSVTGGRLYSRPNQSNL", "length": 496 }, "evidence": [ { "id": "F1SNK8", "url": "https://omabrowser.org/oma/group/F1SNK8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5VZB9-1", "protein_name": "Doublesex- and mab-3-related transcription factor A1", "gene_name": "DMRTA1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERSQCGSRDRGVSGRPHLAPGLVVAAPPPPSPALPVPSGMQVPPAFLRPPSLFLRAAAAAAAAAAATSGSGGCPPAPGLESGVGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLQRLLCSGLSWPPGGRASGGGGRAENPQSTGGPAAGAALGLGALRQASGSATPAFEVFQQDYPEEKQEQKESKCESCQNGQEELISKSHQLYLGSSSRSNGVIGKQSIGSSISEYSNKPDSILSPHPGEQSGGEESPRSLSSSDLESGNESEWVKDLTATKASLPTVSSRPRDPLDILTKIFPNYRRSRLEGILRFCKGDVVQAIEQVLNGKEHKPDNRNLANSEELENTAFQRASSFSLAGIGFGTLGNKSAFSPLQTTSASYGGDSSLYGVNPRVGISPLRLAYSSAGRGLSGFMSPYLTPGLVPTLPFRPALDYAFSGMIRDSSYLSSKDSITCGRLYFRPNQDNP", "length": 504 }, "evidence": [ { "id": "F1SNK8", "url": "https://omabrowser.org/oma/group/F1SNK8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CFG4-1", "protein_name": "Doublesex- and mab-3-related transcription factor A1", "gene_name": "Dmrta1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERLPHGRRDRSGGCRPHLAPGRAAAPASAARSVSSGIPVSATFLRPPGLFLRSTASSGRAGCAPGPGLDRALGAVGCGYPRTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEARGLHRLLYQGSSGSGAQASGGSGRTESPQVLNNPMAVAVLGAGASRHPGSRSVPTFEVFQQDYADRKQEPKQRNCESCQSRQEEPVSNTHHHSLGSSKGNVTVEKQGFMSSIPEHPDKSTIILSPCPTDQSGGEDSPRSFSSSDLESGNESEWARDYIATRASLSTVTSRPRDPLGILTRIFPGYKHSRLEGILQFCKGDVVQAIEQILNGREHKPDCRDLARADLENAAFQRASDFSLAGIGFGTLSNKSALSPLEAASAAYGGDSTLYSFNPRLAFSPLRLAYSSPGRALSGFVSPYLTPGLVPALPFRPTLDYAFPGMIREPSHLPSKHLVAGGRLYFRPNQEHL", "length": 490 }, "evidence": [ { "id": "F1SNK8", "url": "https://omabrowser.org/oma/group/F1SNK8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "pmid": "" }, { "name": "adult locomotory behavior", "id": "GO:0008344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008344", "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "pmid": "" }, { "name": "sex differentiation", "id": "GO:0007548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007548", "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SNK8", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" }, { "start_pos": 385, "end_pos": 387, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNK8" }, { "id": "PS50809", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50809" }, { "id": "PRU00070", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00070" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DM", "eco_id": "ECO_0000259", "start_pos": 91, "end_pos": 138, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 200 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 297, "end_pos": 299 }, { "start_pos": 385, "end_pos": 387 }, { "start_pos": 398, "end_pos": 400 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNN4-1", "uniprot_ac": "F1SNN4", "uniprot_id": "F1SNN4_PIG", "mass": { "chemical_mass": 117366.0, "monoisotopic_mass": 117366.0 }, "refseq": { "ac": "XP_020954785", "name": "teashirt homolog 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954785" }, "gene_names": [ { "name": "TSHZ1", "type": "recommended", "evidence": [ { "id": "F1SNN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" } ] }, { "name": "TSHZ1", "type": "synonym", "evidence": [ { "id": "XP_020954785", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954785" } ] } ], "protein_names": [ { "name": "Teashirt zinc finger homeobox 1", "type": "synonym", "evidence": [ { "id": "F1SNN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNN4/entry#names_and_taxonomy" } ] }, { "name": "teashirt homolog 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020954785", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954785" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNN4", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TSHZ1", "url": "https://www.uniprot.org/uniprotkb/F1SNN4", "locus": { "chromosome": "1", "start_pos": 148906075, "end_pos": 148984832, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004861", "url": "https://www.ensembl.org/id/ENSSSCG00000004861" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004861", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004861", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152487", "url": "https://www.ncbi.nlm.nih.gov/gene/100152487", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TNQEAGY", "url": "https://omabrowser.org/oma/group/TNQEAGY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12487", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12487", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12487:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12487:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF26094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020954785", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954785", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SNN4", "url": "https://www.uniprot.org/uniprotkb/F1SNN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNN4-1", "url": "https://www.uniprot.org/uniprotkb/F1SNN4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRRKQQAPRRSAAYVPEEELKAAEIDEENGEEDGLPLDLQEGDYACNEETEIKEAQSYQNSPVSTATNQDAGYGSPFSENSDQLAHLKSSSSREEKEEPPGPESVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSSSTTSNSDVGQKEGSTPAPTPPTSTSGATGTTASTPSSGAASGSGTSTSSSGGGGGSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLAAPCSPEPAGIAVEASLSESAKDQKAANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPAAHIKKQPDSPAGSTTSEEKKEPEKEKAPVVAPAGEVDKKIKEEGEDSSEKFEPTALYQYLREEDLDDSPRGGVDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLPAVQSVQMQPSYASSVKSLSSEHSALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVSVKKEERPVEKEKGSPAKAVSPVAKENKDFPRTEEPSNGKPQPKKGPEADAGKAKKEGAGDAHTPNGTEPLKAKVTNGCNNLGIITDHSPEPSFINPLSALQSIMNTHLGKVSRPVSPSLDPLAMLYKISTSMLDKPAYPAMPAKPPGALDRYYYENSDQPIDLTKSKSKPLVSGAADGVASPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRETPEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFRTASTYINHLETHLGFSLKDLSKLPLNQIQEQQNVSKVLANKALGPVGASEEDLGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLIYVTELEKQ", "length": 1082, "header": "tr|F1SNN4-1|F1SNN4_PIG Isoform 1 of Teashirt zinc finger homeobox 1 OS=Sus scrofa OX=9823 GN=TSHZ1 PE=3 SV=3 CANONICAL=F1SNN4-1" }, "isoforms": [ { "isoform_ac": "F1SNN4-1", "url": "https://www.uniprot.org/uniprotkb/F1SNN4/entry#F1SNN4-1", "sequence": { "sequence": "MPRRKQQAPRRSAAYVPEEELKAAEIDEENGEEDGLPLDLQEGDYACNEETEIKEAQSYQNSPVSTATNQDAGYGSPFSENSDQLAHLKSSSSREEKEEPPGPESVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSSSTTSNSDVGQKEGSTPAPTPPTSTSGATGTTASTPSSGAASGSGTSTSSSGGGGGSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLAAPCSPEPAGIAVEASLSESAKDQKAANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPAAHIKKQPDSPAGSTTSEEKKEPEKEKAPVVAPAGEVDKKIKEEGEDSSEKFEPTALYQYLREEDLDDSPRGGVDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLPAVQSVQMQPSYASSVKSLSSEHSALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVSVKKEERPVEKEKGSPAKAVSPVAKENKDFPRTEEPSNGKPQPKKGPEADAGKAKKEGAGDAHTPNGTEPLKAKVTNGCNNLGIITDHSPEPSFINPLSALQSIMNTHLGKVSRPVSPSLDPLAMLYKISTSMLDKPAYPAMPAKPPGALDRYYYENSDQPIDLTKSKSKPLVSGAADGVASPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRETPEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFRTASTYINHLETHLGFSLKDLSKLPLNQIQEQQNVSKVLANKALGPVGASEEDLGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLIYVTELEKQ", "length": 1082, "header": "tr|F1SNN4-1|F1SNN4_PIG Isoform 1 of Teashirt zinc finger homeobox 1 OS=Sus scrofa OX=9823 GN=TSHZ1 PE=3 SV=3 CANONICAL=F1SNN4-1" }, "locus": { "chromosome": "1", "start_pos": 148984797, "end_pos": 148906506, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005367.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005367.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005234.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005234.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 159, "start_aa": "Thr", "end_pos": 159, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr159", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNN4", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7K1T3-1", "protein_name": "Teashirt homolog 1 isoform X1", "gene_name": "Tshz1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGTGRLSFSSCCPSAYVPEEELKAAEIDEEHVEDGGLSLDIQESEFACSEETEIKEPQSYQNSPVSTATNHDAGYGSPFSESSDQLAHFKSSSSREEKEEPQCPESVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSGSTTSNNDASQKESSTPTPTPPTSTASTACTTATTAITSCSTSTSHNSTTSNNSSSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALHDLASPCSPEPTGMATEVALSESSKDQKTANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASSIKKQPDSPAGSVASEEKKEPEKEKEKEKAPPAAGDAERKIKEETEDATEKFEPTTLYQYLREEDLDESPKGGVDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLQSAVQSVQIQPSYASSVKSLSSTEHNALLHSPGRLTPPPHKSNVSAMEELVEKVTGKVNVKKEERPIEKEKASPVKATSPVAKENKDLPKSEETGSKPQKKSSDVETGKAKTEGPLDAHTPNGTEPLKAKVTNGCSNLGIITEHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPIYPTTPAKQADAIDRYYYENSDQPIDLTKAKNKPLVSGVADAVSSPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRETAEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCSDCASQFRTASTYISHLETHLGFSLKDLSKLPLSQIQEQQTVSKVLANKTLGPLGSAEEDLGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLIYVTELEKQ", "length": 1084 }, "evidence": [ { "id": "F1SNN4", "url": "https://omabrowser.org/oma/group/F1SNN4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0LLL2-1", "protein_name": "Teashirt zinc finger homeobox 1", "gene_name": "Tshz1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRRKQQAPRRSAESSLKVEATDAYVPEEELKAAEIDEEHVEDGGLSLDIQESEFVCNEETEIKEAQSYQNSPVSTATNQDAGYGSPFSEGSDQLAHFKSSTSREEKEEPQCPDSVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSSSTTSNNDASQKESSTPTPTPPTSTASTACTTATTAITSCSTSTSHSSTTSNNSSSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLASPCSPEPTGMATDVALSESAKDQKTANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASSIKKQPDSPAGSVASEEKKEPEKEKEKEKAPPTAGDTERKIKEETEDATEKFEPTALYQYLREEDLDDSPKGGVDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLQSAVQSVQIQPSYASSVKSLSSTEHNALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVSVKKEERPTEKEKASPVKAISPVAKENKDLPKSEETGSKPQKKGSDLETGKAKKESTVDAHTPNGTEPLKAKVTNGCSNLGIITDHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPVYPTTPAKQADAIDRYYYENSDQPIDLTKSKNKPLVSGVADAVSSPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRETAEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFRTASTYISHLETHLGFSLKDLSKLPLSQIQEQQSVSKALANKTLGPLGSSEEDLGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLIYVTELEKQ", "length": 1093 }, "evidence": [ { "id": "F1SNN4", "url": "https://omabrowser.org/oma/group/F1SNN4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B3DJM5-1", "protein_name": "Teashirt homolog 1", "gene_name": "tshz1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MISLILQFMLKLHILGTILSHHLFFPLCFVFSAYVPEDELKAAKIDEEHLQDDGLSLDGQDAEYLCNEEDDGREQLSYQNSPLSNGTNPDAGYGSPLSDTSDHLADFKSTSSKEGQDKEEVEDMDTDAKLSLQDSLAQMKAVYANLISDASWSSITKDIMKSKQVSASSINSTSSSHKGNNSVANSHASTIASSGASSSSNASASTKTNVTQSSNSTKATTLTNANNGTINGANSGGVAYDWHQAALAKTLQHTPYHLMPEPSLFSTVQLYRQNNKLYGPVFTGASKFRCKDCSAAYDTLVGLTVHMNETGHYRDDNKDKEEDRGKKWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPMPALASKLVPSTKKRVFQDLMSPCSPDSISSTPGIPLAETAPTKDPKISNPYVTANNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTNSASKKGKQLVFDPVVEEKIQSIPLPPTTTRLPAPAIKSQPDSPIHPSIMDDRKELEEEKFEEPEEKKIKQEKEDPSERVEKSEKLSHYKYLREEDLEESPKGGLDILKSLENTVSSAISKAQTGTPTWGGYPSIHAAYQLQGSVKSSIPAIQSVQIQPTFNASSLKSLTSDSSTLIHSPSSPSPPPNHKSNVLAMEELVEKVTGKIPSKKDRDEKLTERNSKHLTAELPSPVLKERKDLPKPDDLTKPTKNGTVDKDLEHTPVREGEYKESHADNPIKNGTDALKTQVSNGCGNLGIITDHSPEQPLVNPLSALQSIMNTHLGKASKTVSPLLDPLAMLYKISNNMMEKPMYNPAQVKQVEPINRYYENDDDQPMDLTKSKSGIGPTNNCTSTIISNSSITNSTRPILSTLAEQVSSPLRENALMDISDMVKNLTGRLTPKSSTPSSISEKSDADGCAFEDGLEDLSPIQKRKGRQSNWNPQHLLILQAQFASSLRETPDGKYIITDLGPQERVHICKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNIDSGHPLFLCSDCASQFRTPSTYINHLESHLGFSLKDLSKLSIDLIRDQQAVTKMITDKTFRALDLNEEDSNSIFQCKLCNRTFVSKHAVKLHLSKTHGKSPEDHLIFVTELEKLEKA", "length": 1158 }, "evidence": [ { "id": "F1SNN4", "url": "https://omabrowser.org/oma/group/F1SNN4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E1BWB0-1", "protein_name": "Teashirt zinc finger homeobox 1", "gene_name": "TSHZ1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPRRKQQAPRRSAAYVPEEELKAAEIDEDSVEDDGLSLDIQENEYLCNEETEIKEAQSYQNSPVSTATNQDAGYGSPFSENSDQLAHFKSTSSKEEKEDPQCTDNVSYPQDSLAQIKAVYANLLSETCWSSLALDLKKSNPTTSNNGISQNENTTSTDTNVSSQSTGTTSTSTSTSTTTSNTSNSSSNSNSGGSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKEADKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLASPCSPEPTGIAAEASLAESAKDQKTANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTNSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASNIKKQPDSPAGSTNSEEKKDPEKEKVVVGETEKKIKEENEDSTEKFEPTALYQYLREEDLDDSPKGGIDILKSLENTVTTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLQTTVQSVQMQPSYASSVKSLSSEHNALIHSPGNLTPPPHKSNVSAMEELVEKVTGKINVKKEEKPLEKEKSSPVKPMSPAAKENKDFPKAEEINNKQQQKKSSETEVQKVKKDSPAEAHTPNGTEPLKTKVANGCNNLGIITDHSPEPSFINPLSALQSIMNTHLGKISKPVSPSLDPLAMLYKISNSMLDKPIYPTTPVKQADAIDRYYYENSDQPIDLTKSKNKPLVSSVADSASSPLRESALLDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPIHKRKGRQSNWNPQHLLILQAQFASSLRETSEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFRTASTYISHLETHLGFSLKDLSKLPLNQIQEQQNVSKVLTNKTLGSLGIAEEDLGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLIYVTELEKQ", "length": 1076 }, "evidence": [ { "id": "F1SNN4", "url": "https://omabrowser.org/oma/group/F1SNN4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5DTH5-1", "protein_name": "Teashirt homolog 1", "gene_name": "Tshz1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRRKQQAPRRSAAYVPEEELKAAEIDEEHAEDGGLSLDIQESEFACNEETEIKEAQSYQNSPVSTATNQDAGYGSPFSEGSDQLAHFKSSSSREEKEESQCPDSVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSNSATSNNDASQKESSTPTPTPPTSTASTACTTATTAITSCSTSTSHSSTTSNSSSSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLASPCSPEPTGVATEVALSESAKDQKTANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASSIKKQPDSPAGSVASEEKKEPEKEKEKEKAPPAAGDAERKIKEETEDATEKFEPTALYQYLREEDLDDSPKGGVDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLQSAVQSVQIQPSYASSVKSLSSTEHNALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVSIKKEERPTEKEKSSPVKAISPVAKENKDLPKTEETGSKPQKKGSDSETGKAKKESTLDAHTPNGTEPLKAKVTNGCGHLGIITDHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPVYPTTPAKQADAIDRYYYENSDQPIDLTKSKNKPLVSGVADAVSSPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRETAEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFRTASTYVSHLETHLGFSLKDLSKLPLSQIQEQQSVVSKALTNKTLGPLGSSEEDLGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLIYVTELEKQ", "length": 1084 }, "evidence": [ { "id": "F1SNN4", "url": "https://omabrowser.org/oma/group/F1SNN4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZSZ6-1", "protein_name": "Teashirt homolog 1", "gene_name": "TSHZ1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPRRKQQAPRRSAAYVPEEELKAAEIDEEHVEDDGLSLDIQESEYMCNEETEIKEAQSYQNSPVSSATNQDAGYGSPFSESSDQLAHFKGSSSREEKEDPQCPDSVSYPQDSLAQIKAVYANLFSESCWSSLALDLKKSGSTTSTNDASQKESSAPTPTPPTCPVSTTGPTTSTPSTSCSSSTSHSSTTSTSSSSGYDWHQAALAKTLQQTSSYGLLPEPSLFSTVQLYRQNNKLYGSVFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNRDKDSEKTKRWSKPRKRSLMEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVPLKEPVPAITKLVPSTKKRALQDLAPPCSPEPAGMAAEVALSESAKDQKAANPYVTPNNRYGYQNGASYTWQFEARKAQILKCMECGSSHDTLQQLTAHMMVTGHFLKVTTSASKKGKQLVLDPVVEEKIQSIPLPPTTHTRLPASSIKKQPDSPAGSTTSEEKKEPEKEKPPVAGDAEKIKEESEDSLEKFEPSTLYPYLREEDLDDSPKGGLDILKSLENTVSTAISKAQNGAPSWGGYPSIHAAYQLPGTVKPLPAAVQSVQVQPSYAGGVKSLSSAEHNALLHSPGSLTPPPHKSNVSAMEELVEKVTGKVNIKKEERPPEKEKSSLAKAASPIAKENKDFPKTEEVSGKPQKKGPEAETGKAKKEGPLDVHTPNGTEPLKAKVTNGCNNLGIIMDHSPEPSFINPLSALQSIMNTHLGKVSKPVSPSLDPLAMLYKISNSMLDKPVYPATPVKQADAIDRYYYENSDQPIDLTKSKNKPLVSSVADSVASPLRESALMDISDMVKNLTGRLTPKSSTPSTVSEKSDADGSSFEEALDELSPVHKRKGRQSNWNPQHLLILQAQFASSLRETTEGKYIMSDLGPQERVHISKFTGLSMTTISHWLANVKYQLRRTGGTKFLKNLDTGHPVFFCNDCASQFRTASTYISHLETHLGFSLKDLSKLPLNQIQEQQNVSKVLTNKTLGPLGATEEDLGSTFQCKLCNRTFASKHAVKLHLSKTHGKSPEDHLIYVTELEKQ", "length": 1077 }, "evidence": [ { "id": "F1SNN4", "url": "https://omabrowser.org/oma/group/F1SNN4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SNN4", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SNN4", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SNN4", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SNN4", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SNN4", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SNN4", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1018, "end_pos": 1020, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1048, "end_pos": 1050, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 719, "end_pos": 721, "annotation": "n_glycosylation_sequon" }, { "start_pos": 851, "end_pos": 853, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNN4" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 308, "end_pos": 337, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 159 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1018, "end_pos": 1020 }, { "start_pos": 1048, "end_pos": 1050 }, { "start_pos": 267, "end_pos": 269 }, { "start_pos": 638, "end_pos": 640 }, { "start_pos": 719, "end_pos": 721 }, { "start_pos": 851, "end_pos": 853 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNR3-1", "uniprot_ac": "F1SNR3", "uniprot_id": "F1SNR3_PIG", "mass": { "chemical_mass": 181040.0, "monoisotopic_mass": 181040.0 }, "refseq": {}, "gene_names": [ { "name": "TRPM1", "type": "recommended", "evidence": [ { "id": "F1SNR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ] } ], "protein_names": [ { "name": "Transient receptor potential cation channel subfamily M member 1", "type": "synonym", "evidence": [ { "id": "F1SNR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRPM1", "url": "https://www.uniprot.org/uniprotkb/F1SNR3", "locus": { "chromosome": "1", "start_pos": 143855984, "end_pos": 143709864, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004843", "url": "https://www.ensembl.org/id/ENSSSCG00000004843" } ] } } ], "crossref": [ { "id": "IPR005821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041491", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041491", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057366", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057366", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13800", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13800", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13800:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13800:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16519", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16519", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18139", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18139", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25508", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25508", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3295583", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3295583", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "28699", "url": "https://www.rhea-db.org/rhea/28699", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "29671", "url": "https://www.rhea-db.org/rhea/29671", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "29827", "url": "https://www.rhea-db.org/rhea/29827", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SNR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSFKRGSLKSSTSGSQKGQKAWIEKFCKRECIFVIPSTKDPNRCCCGQLTNQHIPPLPSVTASKNGEENKQVDTQPEKWSVGKHTQSYPTDSYGILEFQGGGYSNKAMYIRVSYDTKPDSLLHLMVRDWQLELPKLLISVHGGLQNFEMQPKLKQVFGKGLIKAAVTTGAWIFTGGVSTGVISHVGDALKDHSSKSRGRVCAIGIAPWGIVENKEDLVGKDVTRVYQTMSNPLSKLSVLNNSHTHFILADNGTLGKYGAEVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGSGRASDILSFAHKYSEEGGIINDSLKDQLLVTIQKTFNYSKTQSHQLFAIIMECMKKKELVTVFRMGSEGQQDIEMAILTALLKGTNASAPDQLSLALAWNRVDIARSQIFVFGPRWPPLGSLAPPTDSKAMEKEKKPPTATTKGGRGKGKGKKKGKVKEEAEEETDPRKLELLNWVNALEQAMLDALVLDRVDFVKLLIENGVNMQHFLTIPRLEELYNTRLGPPNTLHLLVRDVKKGNLPPDYHISLIDIGLVLEYLMGGAYRCNYTRKSFRTLYNNLFGPKRPKALKLLGMEDDEPPAKGKKKKKKKKEEEIDIDVDDPAVSRFQYPFHELMVWAVLMKRQKMAVFLWQRGEESMAKALVACKLYKSMAHESSESELVDDISQDLDNNSKDFGQLAVELLDQSYKHDEQIAMKLLTYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGLKVIMGILLPPTILFLEFRTSDDFSYQTSKENEDGKEKEEENMDTNADAGSRKGDEENEQKKQRSVPIGTKICEFYNAPIVKFWFYTISYLGYLLLFNYVILVRMERWPCLQEWIVISYILSLALEKIREILMSEPGKLSQKIKVWLQEYWNITDLVAISMFMIGAVLRLQKQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPDEEPSWKLARNIFYMPYWMIYGEVFADQIDLYAMEINNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSRRCRKKREGDQDEQDRGLKLFLSEEELKRLHEFEEQCVREHFQEKEDEQQSSSEERIRVTCERVENMSMRLEEINERENFMKTSLQTVDLRLSQLEELSNRMVNALENLAGIDKSDLIQTRSRASSECDATFLLRQSSINSADGYSLYRYHFNGEELLYEDTSLSMPPGTVFRKKAGSFCTQEEKDQRTHLAPELQGSLHLPPGTPAIPDCSQLAEDHMKITSELKLDPDIGISPKDDERQANSKREETVSLCLNETNVPQGQNEFDFPGTQLTVETTKMEGTTSYPLEEAQMTHYYPDETFCACKTMKSRSFVYSRGRKLVSGVNNWNAEYSEVVGQQWTTEWKYQVHKITRSQSTDIPSFGSEAAAWAEHKGHCTDTEDENCVSKTAPESSPLSLAVTDRTDKENLLSVQTDRTLGFSSLRSKSLHGHSRNTKAIQGNLERSGHASSIGSLVVVSGITTEEQKGKQEKPSTETEC", "length": 1592, "header": "tr|F1SNR3-1|F1SNR3_PIG Isoform 1 of Transient receptor potential cation channel subfamily M member 1 OS=Sus scrofa OX=9823 GN=TRPM1 PE=4 SV=5 CANONICAL=F1SNR3-1" }, "isoforms": [ { "isoform_ac": "F1SNR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SNR3/entry#F1SNR3-1", "sequence": { "sequence": "MSSSFKRGSLKSSTSGSQKGQKAWIEKFCKRECIFVIPSTKDPNRCCCGQLTNQHIPPLPSVTASKNGEENKQVDTQPEKWSVGKHTQSYPTDSYGILEFQGGGYSNKAMYIRVSYDTKPDSLLHLMVRDWQLELPKLLISVHGGLQNFEMQPKLKQVFGKGLIKAAVTTGAWIFTGGVSTGVISHVGDALKDHSSKSRGRVCAIGIAPWGIVENKEDLVGKDVTRVYQTMSNPLSKLSVLNNSHTHFILADNGTLGKYGAEVKLRRQLEKHISLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLREDPPVPVVVCDGSGRASDILSFAHKYSEEGGIINDSLKDQLLVTIQKTFNYSKTQSHQLFAIIMECMKKKELVTVFRMGSEGQQDIEMAILTALLKGTNASAPDQLSLALAWNRVDIARSQIFVFGPRWPPLGSLAPPTDSKAMEKEKKPPTATTKGGRGKGKGKKKGKVKEEAEEETDPRKLELLNWVNALEQAMLDALVLDRVDFVKLLIENGVNMQHFLTIPRLEELYNTRLGPPNTLHLLVRDVKKGNLPPDYHISLIDIGLVLEYLMGGAYRCNYTRKSFRTLYNNLFGPKRPKALKLLGMEDDEPPAKGKKKKKKKKEEEIDIDVDDPAVSRFQYPFHELMVWAVLMKRQKMAVFLWQRGEESMAKALVACKLYKSMAHESSESELVDDISQDLDNNSKDFGQLAVELLDQSYKHDEQIAMKLLTYELKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGLKVIMGILLPPTILFLEFRTSDDFSYQTSKENEDGKEKEEENMDTNADAGSRKGDEENEQKKQRSVPIGTKICEFYNAPIVKFWFYTISYLGYLLLFNYVILVRMERWPCLQEWIVISYILSLALEKIREILMSEPGKLSQKIKVWLQEYWNITDLVAISMFMIGAVLRLQKQPYMGYGRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPDEEPSWKLARNIFYMPYWMIYGEVFADQIDLYAMEINNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSRRCRKKREGDQDEQDRGLKLFLSEEELKRLHEFEEQCVREHFQEKEDEQQSSSEERIRVTCERVENMSMRLEEINERENFMKTSLQTVDLRLSQLEELSNRMVNALENLAGIDKSDLIQTRSRASSECDATFLLRQSSINSADGYSLYRYHFNGEELLYEDTSLSMPPGTVFRKKAGSFCTQEEKDQRTHLAPELQGSLHLPPGTPAIPDCSQLAEDHMKITSELKLDPDIGISPKDDERQANSKREETVSLCLNETNVPQGQNEFDFPGTQLTVETTKMEGTTSYPLEEAQMTHYYPDETFCACKTMKSRSFVYSRGRKLVSGVNNWNAEYSEVVGQQWTTEWKYQVHKITRSQSTDIPSFGSEAAAWAEHKGHCTDTEDENCVSKTAPESSPLSLAVTDRTDKENLLSVQTDRTLGFSSLRSKSLHGHSRNTKAIQGNLERSGHASSIGSLVVVSGITTEEQKGKQEKPSTETEC", "length": 1592, "header": "tr|F1SNR3-1|F1SNR3_PIG Isoform 1 of Transient receptor potential cation channel subfamily M member 1 OS=Sus scrofa OX=9823 GN=TRPM1 PE=4 SV=5 CANONICAL=F1SNR3-1" }, "locus": { "chromosome": "1", "start_pos": 143855981, "end_pos": 143709864, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005345.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005345.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005213.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005213.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3295583", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3295583", "resource": "Reactome", "description": "TRP channels" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium channel activity", "id": "GO:0005262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005262", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "protein tetramerization", "id": "GO:0051262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051262", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" }, { "name": "calcium ion transport", "id": "GO:0006816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006816", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" }, { "name": "visual perception", "id": "GO:0007601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007601", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" }, { "name": "monoatomic cation transmembrane transport", "id": "GO:0098655", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098655", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" }, { "name": "calcium ion import across plasma membrane", "id": "GO:0098703", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098703", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" }, { "name": "G protein-coupled glutamate receptor signaling pathway", "id": "GO:0007216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007216", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" }, { "name": "cellular response to light stimulus", "id": "GO:0071482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071482", "evidence": [ { "database": "UniProtKB", "id": "F1SNR3", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1066, "end_pos": 1068, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1181, "end_pos": 1183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1370, "end_pos": 1372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 358, "end_pos": 360, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 587, "end_pos": 589, "annotation": "n_glycosylation_sequon" }, { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" }, { "start_pos": 744, "end_pos": 746, "annotation": "n_glycosylation_sequon" }, { "start_pos": 747, "end_pos": 749, "annotation": "n_glycosylation_sequon" }, { "start_pos": 939, "end_pos": 941, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "28699", "name": "", "equation": "Mn(2+)(in) = Mn(2+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "28699", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/28699" } ] }, { "id": "29671", "name": "", "equation": "Ca(2+)(in) = Ca(2+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29671", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29671" } ] }, { "id": "29827", "name": "", "equation": "Mg(2+)(in) = Mg(2+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29827", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29827" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" }, { "id": "PF00520", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ion transport", "eco_id": "ECO_0000259", "start_pos": 876, "end_pos": 1067, "start_aa": "Ser", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" }, { "id": "PF18139", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18139" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRPM SLOG", "eco_id": "ECO_0000259", "start_pos": 109, "end_pos": 374, "start_aa": "Ala", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" }, { "id": "PF16519", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16519" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRPM tetramerisation", "eco_id": "ECO_0000259", "start_pos": 1169, "end_pos": 1224, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR3" }, { "id": "PF25508", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25508" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRPM-like", "eco_id": "ECO_0000259", "start_pos": 499, "end_pos": 765, "start_aa": "Ala", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1066, "end_pos": 1068 }, { "start_pos": 1181, "end_pos": 1183 }, { "start_pos": 1370, "end_pos": 1372 }, { "start_pos": 242, "end_pos": 244 }, { "start_pos": 253, "end_pos": 255 }, { "start_pos": 342, "end_pos": 344 }, { "start_pos": 358, "end_pos": 360 }, { "start_pos": 407, "end_pos": 409 }, { "start_pos": 587, "end_pos": 589 }, { "start_pos": 710, "end_pos": 712 }, { "start_pos": 744, "end_pos": 746 }, { "start_pos": 747, "end_pos": 749 }, { "start_pos": 939, "end_pos": 941 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNR5-1", "uniprot_ac": "F1SNR5", "uniprot_id": "F1SNR5_PIG", "mass": { "chemical_mass": 101776.0, "monoisotopic_mass": 101776.0 }, "refseq": { "ac": "XP_020954363", "name": "OTU domain-containing protein 7A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954363" }, "gene_names": [ { "name": "OTUD7A", "type": "recommended", "evidence": [ { "id": "F1SNR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ] }, { "name": "OTUD7A", "type": "synonym", "evidence": [ { "id": "XP_020954363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954363" } ] } ], "protein_names": [ { "name": "ubiquitinyl hydrolase 1", "type": "recommended", "evidence": [ { "id": "F1SNR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR5/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "F1SNR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR5/entry#names_and_taxonomy" } ] }, { "name": "OTU domain-containing protein 7A", "type": "synonym", "evidence": [ { "id": "XP_020954363", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954363" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OTUD7A", "url": "https://www.uniprot.org/uniprotkb/F1SNR5", "locus": { "chromosome": "1", "start_pos": 143419237, "end_pos": 143280174, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004840", "url": "https://www.ensembl.org/id/ENSSSCG00000004840" } ] } } ], "crossref": [ { "id": "F1SNR5", "url": "https://alphafold.ebi.ac.uk/entry/F1SNR5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004840", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004840", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14347", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14347", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22773", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22773", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100525093", "url": "https://www.ncbi.nlm.nih.gov/gene/100525093", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003323", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003323", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051346", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051346", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525093", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525093", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HGKMGRS", "url": "https://omabrowser.org/oma/group/HGKMGRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SNR5", "url": "https://www.orthodb.org/?gene=F1SNR5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13367", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13367", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13367:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13367:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02338", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02338", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28552", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28552", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689896", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689896", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020954363", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954363", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNR5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSSLLPTPTSAQCWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLRQVHTANLPPVFNEGRCPKQPEREPPPPGHTAERPCLPRQEDIAQEKRLSRGISHASSAIVSLARSHVASECSSEQFPLEMPIYTFQLPDLSVYSEDFRSFVERDLIEQATMVALEQAGRLNWWSTVCTSCKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYTMMRTGAEREALKRRWRWQQTQQNKESGLVYTEEEWEREWTELLKLASSEPRTHFSKNGGTGGGVDNAEDPVYESLEEFHVFVLAHILRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEHKLLPLHFAVDPGKDWEWGKDDNDNARLAHLILSLEAKLNLLHSYMNVTWIRIPSETRAPLAQPESPTASAGEDVQSLADSLDSDRDSVCSNSNSNNGKNGKDKEKEKQRKDKDKTRADSVANKLGSFSKTLGIKLKKNMGGLGGLVHGKMSRANSANGKHGDAPERGKEKKAKSRKGSKEESGASASTSPSEKTTPSPTDRAAGASPADKGSGPRGDAWKYSTDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQFHEEMIGYYLTSAQERFSAEQEQRRRDAAAAAASAAKRPPRRPEAEGTPGPERASPGPPAGPPTQLVLKLKERPSPGPAAGTRAARAAAGGAASPGPGGGGARRVGASGPVPGRSPPAPPARQSVIHVQTAGARDEACAPAVGALRPCATYPQQNRSLSSQSYSPARAAALRTVNTVESLARAVPGALPGAAGAVSATEHKSQTYTNGFGAAREGLEFADADADAPAARSNGECGRGGPGAGPAQRRCQRENCAFYGRAETEHFCSCCYREELRRRREARAARP", "length": 940, "header": "tr|F1SNR5-1|F1SNR5_PIG Isoform 1 of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=OTUD7A PE=3 SV=3 CANONICAL=F1SNR5-1" }, "isoforms": [ { "isoform_ac": "F1SNR5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNR5/entry#F1SNR5-1", "sequence": { "sequence": "MLSSLLPTPTSAQCWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLRQVHTANLPPVFNEGRCPKQPEREPPPPGHTAERPCLPRQEDIAQEKRLSRGISHASSAIVSLARSHVASECSSEQFPLEMPIYTFQLPDLSVYSEDFRSFVERDLIEQATMVALEQAGRLNWWSTVCTSCKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYTMMRTGAEREALKRRWRWQQTQQNKESGLVYTEEEWEREWTELLKLASSEPRTHFSKNGGTGGGVDNAEDPVYESLEEFHVFVLAHILRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEHKLLPLHFAVDPGKDWEWGKDDNDNARLAHLILSLEAKLNLLHSYMNVTWIRIPSETRAPLAQPESPTASAGEDVQSLADSLDSDRDSVCSNSNSNNGKNGKDKEKEKQRKDKDKTRADSVANKLGSFSKTLGIKLKKNMGGLGGLVHGKMSRANSANGKHGDAPERGKEKKAKSRKGSKEESGASASTSPSEKTTPSPTDRAAGASPADKGSGPRGDAWKYSTDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQFHEEMIGYYLTSAQERFSAEQEQRRRDAAAAAASAAKRPPRRPEAEGTPGPERASPGPPAGPPTQLVLKLKERPSPGPAAGTRAARAAAGGAASPGPGGGGARRVGASGPVPGRSPPAPPARQSVIHVQTAGARDEACAPAVGALRPCATYPQQNRSLSSQSYSPARAAALRTVNTVESLARAVPGALPGAAGAVSATEHKSQTYTNGFGAAREGLEFADADADAPAARSNGECGRGGPGAGPAQRRCQRENCAFYGRAETEHFCSCCYREELRRRREARAARP", "length": 940, "header": "tr|F1SNR5-1|F1SNR5_PIG Isoform 1 of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=OTUD7A PE=3 SV=3 CANONICAL=F1SNR5-1" }, "locus": { "chromosome": "1", "start_pos": 143418233, "end_pos": 143296595, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005342.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005342.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005210.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005210.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525093", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525093", "resource": "KEGG Pathway" }, { "id": "R-SSC-5689896", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689896", "resource": "Reactome", "description": "Ovarian tumor domain proteases" } ], "orthologs": [ { "uniprot_canonical_ac": "D4ABZ4-1", "protein_name": "ubiquitinyl hydrolase 1", "gene_name": "Otud7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVAGSLSENREAQHVEAPGKNWDLTAALSDYEQLRQVHTANLPHVFNEGRCAKQPERELPQPGHKVERPCLQRQDDIAQAEKRLSRGISHASSAIVSLARSHVANECNNEQFPLEMPIYTFQLPDLSVYSEDFRSFIERDLIEQATMVALEQAGRLNWWSTVCTSCKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYTMMRTGAEREALKRRWRWQQTQQNKESGLVYTEEEWEREWTELLKLASSEPRTHFSKNGSGTGGGVDNSEDPVYESLEEFHVFVLAHILRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEHKLLPLHFAVDPGKDWEWGKDDNDNARLANLILSLEAKLNLLHSYMNVTWIRIPSETRAPLAQPESPTASAGEDVQSLAESLDSDRDSVCSNSNSNNGKNGKDKEKEKQRKDKDKTRADSVANKLGSFSKTLGIKLKKNMGGLGGLVHGKMGRANSANGKNGDSTERNKEKKSKSRKGSKEESGASASTSPSEKTTPSPTDKAAGASPADKGSGSRSDAWKYSTDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQFHEEMIGYYLTSAQERFSAEQEQRRRDAAAAAAAANANANATAKRPARRPEAEGAPGPERASPGPPAAPPTQLVLKLKERPSPGTGGSARATRAAGGAASPGLGGGARRVAPGTGGPTPGRSPPAPTPARQSVIHVQAAARDEACAPTVGALRPCATYPQQNRSLWSQSYSPARSALRTVNTVESLAPGGADAPGPAEHKSQTYSNGFGAARDGLEFADADAPAARSNAECGRGGPGPAQRRCQRENCAFYGRAETEHFCSYCYREELRRRREARAARP", "length": 906 }, "evidence": [ { "id": "F1SNR5", "url": "https://omabrowser.org/oma/group/F1SNR5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MZ13-1", "protein_name": "ubiquitinyl hydrolase 1", "gene_name": "OTUD7A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVSSLLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLRQVHTANLPPVFNEGRCPKQPEREPPPPGHTAERPCLPRQDDIAQEKRLSRGISHASSAIVSLARSHVASECSSEQFPLEMPIYTFQLPDLSVYSEDFRSFVERDLIEQATMVALEQAGRLNWWSTVCTSCKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYTMMRTGAEREALKRRWRWQQTQQNKESGLVYTEEEWEREWTELLKLASSEPRTHFSKNGGSGGGMDNAEDPVYESLEEFHVFVLAHILRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEHKLLPLHFAVDPGKDWEWGKDDNDNARLAHLILSLEAKLNLLHSYMNVTWIRIPSETRAPLAQPESPTASAGEDVQSLADSLDSDRDSVCSNSNSNNGKNGKDKEKEKQRKDKDKTRADSVANKLGSFSKTLGIKLKKNMGGLGGLVHGKMSRANSANGKHGDAPERGKEKKAKARKGSKEESGASASTSPSEKTTPSPTDKAAGASPADKGGGPRGDAWKYSTDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQFHEEMIGYYLTSAQERFSAEQEQRRRDAAAAAAAAAAAASTAKRPQRRPEAEGVPGPERASPGPPAGQPTQLVLKLKERPSPGPGTSSRAARAAAGGSASPGPSGSARRAGASGPVPGRSPPAPGRQSVIHVQAAGAREEPCVPAVGALRPCATYPQQNRSLSSQSYSPARAAALRTVNTVESLARAVPGALPGAAGAAEPKSQTYTNGFGAARDGLEFADADAPAARSNGEGCRGGPGAGPAQRRCQRENCAFYGRAETEHYCSYCYREELRRRREARAARP", "length": 939 }, "evidence": [ { "id": "F1SNR5", "url": "https://omabrowser.org/oma/group/F1SNR5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8R554-1", "protein_name": "OTU domain-containing protein 7A", "gene_name": "Otud7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSSLLPNPPSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLRQVHTANLPHVFNEGRCAKQAERELPQPGHKVERPCLQRQDDIAQAEKRLSRGISHASSAIVSLARSHVANECNNEQFPLEMPIYTFQLPDLSVYSEDFRSFIERDLIEQATMVALEQAGRLNWWSTVCTSCKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYTMMRTGAEREALKRRWRWQQTQQNKEEEWEREWTELLKLASSEPRTHFSKNGSGTGGGVDNSEDPVYESLEEFHVFVLAHILRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEHKLLPLHFAVDPGKDWEWGKDDNDNARLANLILSLEAKLNLLHSYMNVTWIRIPSETRAPLAQPESPTASAGEDVQSLAESLDSDRDSVCSNSNSNNGKNGKDKEKEKQRKDKDKTRADSVANKLGSFSKTLGIKLKKNMGGLGGLVHGKMGRANSANGKNGDSAERNKEKKSKSRKGSKEESGASASTSPSEKTTPSPTDKASGASPADKGSGSRGDAWKYSTDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQFHEEMIGYYLTSAQERFSAEQEQRRRDAAAAAAAATATATVKRPARRPEAEGAPGPERASPGPTAAQPTQLVLKLKERPSPGTGASARAARAAGGAASPGPGGGARRAAPGTGGPTPGRSPPAPARQSVIHVQAAARDEACAPTVGALRPCATYPQQNRSLWSQSYSPARSALRTVNTVESLAPGGADAPGPAEHKSQTYSNGFGAARDGLEFADADAPAARSNAECGRGGPGPAQRRCQRENCAFYGRAETEHFCSYCYREELRRRREARAARP", "length": 926 }, "evidence": [ { "id": "F1SNR5", "url": "https://omabrowser.org/oma/group/F1SNR5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TE49-1", "protein_name": "OTU domain-containing protein 7A", "gene_name": "OTUD7A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVSSVLPNPTSAECWAALLHDPMTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDYEQLRQVHTANLPHVFNEGRGPKQPEREPQPGHKVERPCLQRQDDIAQEKRLSRGISHASSAIVSLARSHVASECNNEQFPLEMPIYTFQLPDLSVYSEDFRSFIERDLIEQATMVALEQAGRLNWWSTVCTSCKRLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKALYTMMRTGAEREALKRRWRWQQTQQNKEEEWEREWTELLKLASSEPRTHFSKNGGTGGGVDNSEDPVYESLEEFHVFVLAHILRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEHKLLPLHFAVDPGKDWEWGKDDNDNARLAHLILSLEAKLNLLHSYMNVTWIRIPSETRAPLAQPESPTASAGEDVQSLADSLDSDRDSVCSNSNSNNGKNGKDKEKEKQRKEKDKTRADSVANKLGSFSKTLGIKLKKNMGGLGGLVHGKMGRANSANGKNGDSAERGKEKKAKSRKGSKEESGASASTSPSEKTTPSPTDKAAGASPAEKGGGPRGDAWKYSTDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQFHEEMIGYYLTSAQERFSAEQEQRRRDAATAAAAAAAAAAATAKRPPRRPETEGVPVPERASPGPPTQLVLKLKERPSPGPAAGRAARAAAGGTASPGGGARRASASGPVPGRSPPAPARQSVIHVQASGARDEACAPAVGALRPCATYPQQNRSLSSQSYSPARAAALRTVNTVESLARAVPGALPGAAGTAGAAEHKSQTYTNGFGALRDGLEFADADAPTARSNGECGRGGPGPVQRRCQRENCAFYGRAETEHYCSYCYREELRRRREARGARP", "length": 926 }, "evidence": [ { "id": "F1SNR5", "url": "https://omabrowser.org/oma/group/F1SNR5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "X1WEZ5-1", "protein_name": "ubiquitinyl hydrolase 1", "gene_name": "otud7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLDMDAVLSDFVRSTGAEPGLARDLLEGKNWDLSAALNDYEQLRQVHTANLPHVFNEGRYYKQTERSSSSSTPQHSSRPEQKQPEDNTQEKRLSRGISHASSAIMSLARLQVSGDCAREQFPLEMPIYTFQLPDLSVYSEDFRSFIERDLIEQSTMMALEQAGRLNWWSTMCTSCKKLLPLATTGDGNCLLHAASLGMWGFHDRDLVLRKSLYAMMKSGAEREALKRRWRWQQTQQNKESGLVYTEEEWEREWNELLKLASSEPRTHFSKNGNSSGGVDNSEDPVYESLEEFHVFVLAHVLRRPIVVIADTMLRDSGGEAFAPIPFGGLYLPLEVPPNRCHCSPLVLAYDQAHFSALVSMEQRDQQREQAVIPLTDSEHKLLALHFAVDPGRDWEWGRDDNDNAKLANLILSLEAKLNLLHNYMNVTWIRIPSETRAPLAQPESPTASAGEDVQSLAESMDSDRESVCSNSNINNGKTSKDKDKDKQRKDKDKTRTDSVANKLGSFSKTLGIKLKKNMGGLGGLVHGKISKSNSTNGRTVENGEQKSKKKDSKTRKGSKEESGQSASTSSSEKATSPSPTDRASGSSPVERPPGSGKNSVDRTLDNWKYSTDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQFHEEMISFYLSSAQERFSAEQEQKRKAETEKKPQTNGVALKKPEQESVFQRECSDSSPPESCSPVLHPSHNPSLGSVKVQERGSPKLAASPIPIPITASIPGSSMSPVPFSSPSNGAKRPGPVPVSAHYSHTPPIQRHSVIHLRDVNVQSSSYKDESYKPTVGTLKTCATYPQQNRSLSSQSYSPARMSGIRTVNAVDTLSYNMPGEHKSHTYTNGFNAGDIRDCLEFADEDPAPHAWLGQDKIKGQSGVCPMYCFQQKRCRRENCTFYGRPETENFCSYCYREELKRRERELKVHRPG", "length": 943 }, "evidence": [ { "id": "F1SNR5", "url": "https://omabrowser.org/oma/group/F1SNR5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ], "pmid": "" }, { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein deubiquitination involved in ubiquitin-dependent protein catabolic process", "id": "GO:0071947", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071947", "evidence": [ { "database": "UniProtKB", "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ], "pmid": "" }, { "name": "protein K11-linked deubiquitination", "id": "GO:0035871", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035871", "evidence": [ { "database": "UniProtKB", "id": "F1SNR5", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 447, "end_pos": 449, "annotation": "n_glycosylation_sequon" }, { "start_pos": 811, "end_pos": 813, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-8865182", "name": "OTUD7A hydrolyses K11diUb", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8865182", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8865182" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNR5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 940, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNR5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNR5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" }, { "id": "PS51036", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51036" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "A20-type", "eco_id": "ECO_0000259", "start_pos": 898, "end_pos": 933, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SNR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR5" }, { "id": "PS50802", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50802" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "OTU", "eco_id": "ECO_0000259", "start_pos": 200, "end_pos": 382, "start_aa": "Leu", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 447, "end_pos": 449 }, { "start_pos": 811, "end_pos": 813 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNR8-1", "uniprot_ac": "F1SNR8", "uniprot_id": "F1SNR8_PIG", "mass": { "chemical_mass": 41075.0, "monoisotopic_mass": 41075.0 }, "refseq": {}, "gene_names": [ { "name": "MKRN3", "type": "recommended", "evidence": [ { "id": "F1SNR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR8" } ] } ], "protein_names": [ { "name": "RING-type E3 ubiquitin transferase", "type": "recommended", "evidence": [ { "id": "F1SNR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR8/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1SNR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNR8", "url": "https://www.uniprot.org/uniprotkb/F1SNR8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MKRN3", "url": "https://www.uniprot.org/uniprotkb/F1SNR8", "locus": {} } ], "crossref": [ { "id": "F1SNR8", "url": "https://alphafold.ebi.ac.uk/entry/F1SNR8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004836", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004836", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036855", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036855", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041367", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041367", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11224:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11224:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18044", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18044", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SNR8", "url": "https://www.uniprot.org/uniprotkb/F1SNR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNR8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEPAAPTEPYEAAGTFGDIEAAGEIKPWPTLPVPPTSRWSPAPGPAPFRPSRVRPAQESGGGAGPRWLPGRSSGSWTKEVVCRYYLHAQCKEGENCRYSHDLSGRQVAREGPGSPPPASTDSGPSAAAHAEALPQEVAEAPPAVSSRSFPLIGSAERVFFEAETEYAGLEAAGGAGAEGWEHAIEFVPGQPYQGRMAPPIYVAPPQGLLTVREQFALGQRQQLCRDAIMGQCFRGPSCMYLHGDMCDLCGLKVLHPFDGAQRADHRRACMEAHEQNMELSFAVQRSADKVCGICMENKCDRVKGEVLTEQGAFCYFSLKKSTLEGPCGATAYLCCLHICCFSSLSSALFNLWLPCGFVFYLTRTKCICLHVFILFSLM", "length": 379, "header": "tr|F1SNR8-1|F1SNR8_PIG Isoform 1 of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=MKRN3 PE=4 SV=3 CANONICAL=F1SNR8-1" }, "isoforms": [ { "isoform_ac": "F1SNR8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNR8/entry#F1SNR8-1", "sequence": { "sequence": "MEEPAAPTEPYEAAGTFGDIEAAGEIKPWPTLPVPPTSRWSPAPGPAPFRPSRVRPAQESGGGAGPRWLPGRSSGSWTKEVVCRYYLHAQCKEGENCRYSHDLSGRQVAREGPGSPPPASTDSGPSAAAHAEALPQEVAEAPPAVSSRSFPLIGSAERVFFEAETEYAGLEAAGGAGAEGWEHAIEFVPGQPYQGRMAPPIYVAPPQGLLTVREQFALGQRQQLCRDAIMGQCFRGPSCMYLHGDMCDLCGLKVLHPFDGAQRADHRRACMEAHEQNMELSFAVQRSADKVCGICMENKCDRVKGEVLTEQGAFCYFSLKKSTLEGPCGATAYLCCLHICCFSSLSSALFNLWLPCGFVFYLTRTKCICLHVFILFSLM", "length": 379, "header": "tr|F1SNR8-1|F1SNR8_PIG Isoform 1 of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=MKRN3 PE=4 SV=3 CANONICAL=F1SNR8-1" }, "locus": { "chromosome": "1", "start_pos": 142500841, "end_pos": 142498795, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005338.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005338.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005206.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005206.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 8, "start_aa": "Thr", "end_pos": 8, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr8", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNR8", "url": "https://www.uniprot.org/uniprotkb/F1SNR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SNR8", "url": "https://www.uniprot.org/uniprotkb/F1SNR8" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SNR8", "url": "https://www.uniprot.org/uniprotkb/F1SNR8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SNR8", "url": "https://www.uniprot.org/uniprotkb/F1SNR8" } ], "pmid": "" }, { "name": "protein polyubiquitination", "id": "GO:0000209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000209", "evidence": [ { "database": "UniProtKB", "id": "F1SNR8", "url": "https://www.uniprot.org/uniprotkb/F1SNR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNR8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 379, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNR8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNR8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNR8" }, { "id": "PS50103", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50103" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C3H1-type", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 104, "start_aa": "Trp", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 8 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNT5-1", "uniprot_ac": "F1SNT5", "uniprot_id": "F1SNT5_PIG", "mass": { "chemical_mass": 30319.0, "monoisotopic_mass": 30319.0 }, "refseq": {}, "gene_names": [ { "name": "TLX2", "type": "recommended", "evidence": [ { "id": "F1SNT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ] } ], "protein_names": [ { "name": "T cell leukemia homeobox 2", "type": "synonym", "evidence": [ { "id": "F1SNT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNT5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TLX2", "url": "https://www.uniprot.org/uniprotkb/F1SNT5", "locus": { "chromosome": "3", "start_pos": 68531962, "end_pos": 68534543, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022499", "url": "https://www.ensembl.org/id/ENSSSCG00000022499" } ] } } ], "crossref": [ { "id": "F1SNT5", "url": "https://alphafold.ebi.ac.uk/entry/F1SNT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022499", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022499", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45921", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45921", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45921:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45921:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPAVLASHNLPHHEPISFGIDQILSCPEPPGSSLGPGRAGQGHGESAAFSGGFHGASSYGPAGSLAPLPGSSGVGPGGVIRVPAHRPLPVQPPAGGAPAVPGPSGLGGAGGLTGLTFPWMDSGRRYAKDRLTAALSPFSGTRRIGHPYQNRTPKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLLLHLQQDALPRPLRPPLPPDPLCLHNSSLFALQNLQPWAEDNKVASVSGLASVV", "length": 283, "header": "tr|F1SNT5-1|F1SNT5_PIG Isoform 1 of T cell leukemia homeobox 2 OS=Sus scrofa OX=9823 GN=TLX2 PE=4 SV=3 CANONICAL=F1SNT5-1" }, "isoforms": [ { "isoform_ac": "F1SNT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNT5/entry#F1SNT5-1", "sequence": { "sequence": "MEPAVLASHNLPHHEPISFGIDQILSCPEPPGSSLGPGRAGQGHGESAAFSGGFHGASSYGPAGSLAPLPGSSGVGPGGVIRVPAHRPLPVQPPAGGAPAVPGPSGLGGAGGLTGLTFPWMDSGRRYAKDRLTAALSPFSGTRRIGHPYQNRTPKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQTAEEREAERHRAGRLLLHLQQDALPRPLRPPLPPDPLCLHNSSLFALQNLQPWAEDNKVASVSGLASVV", "length": 283, "header": "tr|F1SNT5-1|F1SNT5_PIG Isoform 1 of T cell leukemia homeobox 2 OS=Sus scrofa OX=9823 GN=TLX2 PE=4 SV=3 CANONICAL=F1SNT5-1" }, "locus": { "chromosome": "3", "start_pos": 68534344, "end_pos": 68532966, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031551.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031551.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020465.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020465.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ], "pmid": "" }, { "name": "animal organ development", "id": "GO:0048513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048513", "evidence": [ { "database": "UniProtKB", "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ], "pmid": "" }, { "name": "sequence-specific double-stranded DNA binding", "id": "GO:1990837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990837", "evidence": [ { "database": "UniProtKB", "id": "F1SNT5", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNT5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 283, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNT5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNT5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNT5" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 154, "end_pos": 214, "start_aa": "Pro", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 255, "end_pos": 257 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNU4-1", "uniprot_ac": "F1SNU4", "uniprot_id": "F1SNU4_PIG", "mass": { "chemical_mass": 20422.0, "monoisotopic_mass": 20422.0 }, "refseq": { "ac": "XP_003483219", "name": "15 kDa protein B-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483219" }, "gene_names": [ { "name": "LOC100736951", "type": "recommended", "evidence": [ { "id": "F1SNU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNU4" } ] }, { "name": "LOC100736951", "type": "synonym", "evidence": [ { "id": "XP_003483219", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483219" } ] } ], "protein_names": [ { "name": "15 kDa protein B-like", "type": "recommended", "evidence": [ { "id": "F1SNU4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNU4/entry#names_and_taxonomy" } ] }, { "name": "15 kDa protein B-like", "type": "synonym", "evidence": [ { "id": "XP_003483219", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483219" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNU4", "url": "https://www.uniprot.org/uniprotkb/F1SNU4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100736951", "url": "https://www.uniprot.org/uniprotkb/F1SNU4", "locus": {} } ], "crossref": [ { "id": "F1SNU4", "url": "https://alphafold.ebi.ac.uk/entry/F1SNU4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011334", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011334", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100736951", "url": "https://www.ncbi.nlm.nih.gov/gene/100736951", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736951", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736951", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PQDCAFR", "url": "https://omabrowser.org/oma/group/PQDCAFR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SNU4", "url": "https://www.orthodb.org/?gene=F1SNU4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10206", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10206", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10206:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10206:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00666", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00666", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483219", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483219", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SNU4", "url": "https://www.uniprot.org/uniprotkb/F1SNU4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNU4-1", "url": "https://www.uniprot.org/uniprotkb/F1SNU4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGAWRALVLVAGLAAVVSVAQRSLSYEEIINKALWFFNQGRPGQRLFRLLVAIPPPNLNFTTNIPLNFRIKETVCFSTRFHLHRQPRKCAFREGGEERNCNGTFFMLPQFRLLSFQCTEDPDRERELNRQIPRVRRSAASSDVAPPETDISKLPPAARDLYERTKYDIINNILRNF", "length": 177, "header": "tr|F1SNU4-1|F1SNU4_PIG Isoform 1 of 15 kDa protein B-like OS=Sus scrofa OX=9823 GN=LOC100736951 PE=1 SV=1 CANONICAL=F1SNU4-1" }, "isoforms": [ { "isoform_ac": "F1SNU4-1", "url": "https://www.uniprot.org/uniprotkb/F1SNU4/entry#F1SNU4-1", "sequence": { "sequence": "MAGAWRALVLVAGLAAVVSVAQRSLSYEEIINKALWFFNQGRPGQRLFRLLVAIPPPNLNFTTNIPLNFRIKETVCFSTRFHLHRQPRKCAFREGGEERNCNGTFFMLPQFRLLSFQCTEDPDRERELNRQIPRVRRSAASSDVAPPETDISKLPPAARDLYERTKYDIINNILRNF", "length": 177, "header": "tr|F1SNU4-1|F1SNU4_PIG Isoform 1 of 15 kDa protein B-like OS=Sus scrofa OX=9823 GN=LOC100736951 PE=1 SV=1 CANONICAL=F1SNU4-1" }, "locus": { "chromosome": "13", "start_pos": 30173063, "end_pos": 30168870, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012411.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012411.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012087.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012087.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNU4", "url": "https://www.uniprot.org/uniprotkb/F1SNU4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736951", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736951", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZY96-1", "protein_name": "Neutrophilic granule protein", "gene_name": "Ngp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARLWKTFMLVVALAVVACEAHRRLRYEDIVNRAIEAYNRGQRGRPLFRLLSATPPPGQNPTSNVPLEFRIKETVCISTTERRLENCDFREGGEERNCTGEFSRRQWSTSLTLTCDRDCRREVSQVATFSDNKSDDSEKDKLEGLPPHAKNIYENAKYDIISNILHNF", "length": 168 }, "evidence": [ { "id": "F1SNU4", "url": "https://omabrowser.org/oma/group/F1SNU4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O08692-1", "protein_name": "Neutrophilic granule protein", "gene_name": "Ngp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGLWKTFVLVVALAVVSCEALRQLRYEEIVDRAIEAYNQGRQGRPLFRLLSATPPSSQNPATNIPLQFRIKETECTSTQERQPKDCDFLEDGEERNCTGKFFRRRQSTSLTLTCDRDCSREDTQETSFNDKQDVSEKEKFEDVPPHIRNIYEDAKYDIIGNILKNF", "length": 167 }, "evidence": [ { "id": "F1SNU4", "url": "https://omabrowser.org/oma/group/F1SNU4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SNU4", "url": "https://www.uniprot.org/uniprotkb/F1SNU4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "defense response to bacterium", "id": "GO:0042742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042742", "evidence": [ { "database": "UniProtKB", "id": "F1SNU4", "url": "https://www.uniprot.org/uniprotkb/F1SNU4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cysteine-type endopeptidase inhibitor activity", "id": "GO:0004869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004869", "evidence": [ { "database": "UniProtKB", "id": "F1SNU4", "url": "https://www.uniprot.org/uniprotkb/F1SNU4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNU4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 177, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNU4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNU4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNV8-1", "uniprot_ac": "F1SNV8", "uniprot_id": "F1SNV8_PIG", "mass": { "chemical_mass": 52390.0, "monoisotopic_mass": 52390.0 }, "refseq": { "ac": "NP_001137177", "name": "docking protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001137177" }, "gene_names": [ { "name": "DOK1", "type": "recommended", "evidence": [ { "id": "F1SNV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNV8" } ] }, { "name": "DOK1", "type": "synonym", "evidence": [ { "id": "NP_001137177", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001137177" } ] } ], "protein_names": [ { "name": "Docking protein 1", "type": "synonym", "evidence": [ { "id": "F1SNV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNV8/entry#names_and_taxonomy" } ] }, { "name": "docking protein 1, 62kDa (downstream of tyrosine kinase 1)", "type": "synonym", "evidence": [ { "id": "NP_001137177", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001137177" } ] }, { "name": "docking protein 1", "type": "synonym", "evidence": [ { "id": "NP_001137177", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001137177" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNV8", "url": "https://www.uniprot.org/uniprotkb/F1SNV8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DOK1", "url": "https://www.uniprot.org/uniprotkb/F1SNV8", "locus": { "chromosome": "3", "start_pos": 68494520, "end_pos": 68497407, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008265", "url": "https://www.ensembl.org/id/ENSSSCG00000008265" } ] } } ], "crossref": [ { "id": "F1SNV8", "url": "https://alphafold.ebi.ac.uk/entry/F1SNV8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008265", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008265", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01203", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01203", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14676", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14676", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100233179", "url": "https://www.ncbi.nlm.nih.gov/gene/100233179", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002404", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002404", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050996", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050996", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100233179", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100233179", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EFFDCKE", "url": "https://omabrowser.org/oma/group/EFFDCKE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SNV8", "url": "https://www.orthodb.org/?gene=F1SNV8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21258", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21258", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21258:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21258:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02174", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02174", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8849469", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8849469", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8853659", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8853659", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001137177", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001137177", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SNV8", "url": "https://www.uniprot.org/uniprotkb/F1SNV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGAVMEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGPSSGGGRGGSRRLDCKVIRLAECVSVAPVAVESPPEPGAAAFRLDTAQRSHLLAADAPSSVAWVQTLCRNAFPKGSWALAPAENPPKLSALEMLENSLYSPAWEGSQFWVTAQRTEAAERCGLHGSYVLRVEAEKLTLLAVAAQSQILEPLLSWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTAQGNDIFQAVENAIHRQKAQGKAVQGQDVLRADSHEGEVAEGTLASPPGPQELPGNPPAVYAEPLDSLRVPPRPSRDSLYSDPLDSTPARAGEGAQLKKPLYWDLYEHVQQQLLKTKLTDPKEDPIYDEPEGLAPAALRGLYDLPQEPKDAWWCQARVKEEGYELPYNPATDDYAVPPPRNTKPFPAPKPQGPAFSEARAATGSGSKGHSSDTALYSQVQKSGASGSWDCGLSGVGTDKMGVKSEDST", "length": 483, "header": "tr|F1SNV8-1|F1SNV8_PIG Isoform 1 of Docking protein 1 OS=Sus scrofa OX=9823 GN=DOK1 PE=3 SV=1 CANONICAL=F1SNV8-1" }, "isoforms": [ { "isoform_ac": "F1SNV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SNV8/entry#F1SNV8-1", "sequence": { "sequence": "MDGAVMEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGPSSGGGRGGSRRLDCKVIRLAECVSVAPVAVESPPEPGAAAFRLDTAQRSHLLAADAPSSVAWVQTLCRNAFPKGSWALAPAENPPKLSALEMLENSLYSPAWEGSQFWVTAQRTEAAERCGLHGSYVLRVEAEKLTLLAVAAQSQILEPLLSWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTAQGNDIFQAVENAIHRQKAQGKAVQGQDVLRADSHEGEVAEGTLASPPGPQELPGNPPAVYAEPLDSLRVPPRPSRDSLYSDPLDSTPARAGEGAQLKKPLYWDLYEHVQQQLLKTKLTDPKEDPIYDEPEGLAPAALRGLYDLPQEPKDAWWCQARVKEEGYELPYNPATDDYAVPPPRNTKPFPAPKPQGPAFSEARAATGSGSKGHSSDTALYSQVQKSGASGSWDCGLSGVGTDKMGVKSEDST", "length": 483, "header": "tr|F1SNV8-1|F1SNV8_PIG Isoform 1 of Docking protein 1 OS=Sus scrofa OX=9823 GN=DOK1 PE=3 SV=1 CANONICAL=F1SNV8-1" }, "locus": { "chromosome": "3", "start_pos": 68497337, "end_pos": 68494929, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009051.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009051.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008823.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008823.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 322, "start_aa": "Thr", "end_pos": 322, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr322", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNV8", "url": "https://www.uniprot.org/uniprotkb/F1SNV8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100233179", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100233179", "resource": "KEGG Pathway" }, { "id": "R-SSC-8849469", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8849469", "resource": "Reactome", "description": "PTK6 Regulates RTKs and Their Effectors AKT1 and DOK1" }, { "id": "R-SSC-8853659", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8853659", "resource": "Reactome", "description": "RET signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PZ39-1", "protein_name": "Docking protein 1", "gene_name": "DOK1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPPAKEGQLFVQHSNKFGTKRWKRGWFALFPASQHGVARLEFFDCKEAAGPAGRLGTRRLDKTVVRLADCTSVTPAPAESGPRAGTAAFRLETSGRSYLLAAEQQQSEEWVAKLCEIAFPGNGPRNAAVAVQCGGEGSGEAPVLEMAVNSIYYSRDEVNAFWVTVQRTEAAERCELRGSYVLKAERDSLILKDPRTREILYVWPYRLLRRYGRDKVMFSFEAGRRCDSGPGNFTFETKQGNEIFRLVEASIREQKAQVEENQQSCDSLESDSPSVVLIRQALADALSLEQPTEGDDAAAPKAGLAPRPSAAAEERDAISLLKTRMLPEPPVLQAKPPITSTPPRSPLPKAPRAVLPDKDPSSLYSEPLDSVKGFRPRLDPLYADPIDSKATGAVDGVKLRVPFPGTCEQVRAEGCGPARKEHIYDEPEGCAPRVLPAATSIYDEARPIGEAWRTQGHDGKSGYEYPYNPSTDDYSVPAFKAKGPKPVPAPKPPATFISKCAERSEDPGRWRGNLAPEKPAIKPGLNSSNNNNNTEVLYCRVVKPQRGQRKEQCVDECSLSPVYEDLGEI", "length": 570 }, "evidence": [ { "id": "F1SNV8", "url": "https://omabrowser.org/oma/group/F1SNV8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9T1U3-1", "protein_name": "Docking protein 1", "gene_name": "DOK1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASWGNQPAETAAPGSQPSSQRWRKTWAVLYPASPHGVARLEFFDHKGSSSGGGRGSSRRLDCKVIRLAECVSVAPVAVESPPEPGAAAFRLDTAQRSHLLAADAPSSAAWVQTLCQNAFPKGSWALAPAENPPKLSALEMLENSLYSPSWEGSQFWVTVQKTEAAERCGLHGSYVLRVEAERLTLLAPGAQRQILEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTAQGNDIFQAVETAIHRQKIQGKAGQGQDVLRADSHEGEVADGKLASLAAPLELPGSPPALYSEPLDSLRIPPGPSQDSLYSDPLDSTPARAGEGTQLKKALYWDLCEHVQQKLIKAKLTDPKEDPIYDEPEGLAPATLRGLYDLPQEPKDAWWCQARVKEEGYELPYNPAMDDYAVPPPRSTKPFPAPKPQGLALSESGAATGSGSQGHSSDTALYSQVQKSGASGSWDCGLSGVVTDRTGAKSEGST", "length": 484 }, "evidence": [ { "id": "F1SNV8", "url": "https://omabrowser.org/oma/group/F1SNV8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3I7U7-1", "protein_name": "Docking protein 1 isoform X1", "gene_name": "Dok1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDGAVMEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSGGGRGGSRRLDCKMIRLAECVSVAPVSVESPPEPGATAFRLDTAQRSHLLAADAPSSAAWVQSLCRNAFPKGGWALAQTENPPKFSALEMLENSLYSPTWEGSQFWVTTQKTEASERCGLQGSYILRVEAEKLTLLTLGTQSQILEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGAGTFTFQTTQGNDIFQAVEAAIQKQKAQGKVGQAQDILRTESHEGEAEVKVTSPPAPQEPLDSPPALYAEPLDSLRIPPGPSQDSLYSDPLGSTPARAGEGMHSKKPLYWDLYGHVQQRLLKAKLTDSKEDPIYDEPEGLAPAPPRGLYDLPQEPKDAWWCQARLKEEGYELPYNPATDDYAVPPPRNSKPVPAPKPQGLVLPEPGTTGGSGSKDHSSDMALYSQVQKSGTSGGWDCGFSRVGNDRTGVKSEGST", "length": 480 }, "evidence": [ { "id": "F1SNV8", "url": "https://omabrowser.org/oma/group/F1SNV8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P97465-1", "protein_name": "Docking protein 1", "gene_name": "Dok1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDGAVMEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSRGGRGGSRRLDCKMIRLAECVSVVPVTVESPPEPGAVAFRLDTAQRSHLLAADAVSSTAWVQTLCRTAFPKGGWALAQTENQPKFSALEMLENSLYSPTWEGSQFWVTSQKTEASERCGLQGSYILRVEAEKLTLLTLGAQSQILEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTSQGNDIFQAVEAAIQQQKAQGKVGQAQDILRTDSHDGETEGKTVPPPVPQDPLGSPPALYAEPLDSLRIPPGPSQDSVYSDPLGSTPAGAGEGVHSKKPLYWDLYGHVQQQLLKTKLTDSKEDPIYDEPEGLAPAPPRGLYDLPQEPRDAWWCQARLKEEGYELPYNPATDDYAVPPPRSPKPAPAPKPQGLILPESGTTRGSGSKGFSSDTALYSQVQKSGTSGAWDCGLSKVGNDRAGVKSEGST", "length": 482 }, "evidence": [ { "id": "F1SNV8", "url": "https://omabrowser.org/oma/group/F1SNV8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q4QQV2-1", "protein_name": "Docking protein 1", "gene_name": "Dok1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDGALMEGPLFLQSQRFGTKRWKKTWAVLYPASPHGVARLEFFDHKGSSSGGGRGGSRRLDCKMIRLAECVSVVPVTVESPPEPGASAFRLDTAQRSHLLAADAASSTAWVQILCRTAFPKGGWALAQTENPPKFSALEMLENSLYSPTWEGSQFWVTSQKTEASERCGLQGSYVLRVEAEKLTLLTLGAQSQILEPLLFWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTAQGNDIFQAVEAAIQQQKAQGKVGQGQDITRTDSHDGETEGKMAPTPVPQEPLGSPPALYAEPLDSLRIPPGPSQDSLYSDPLGSTPAGAGEGVQRKKPLYWDLYGHVQQQLLKTKLIDSKEDPIYDEPEGLAPAPLRGLYDLPQEPKDAWWCQARLKEEGYELPYNPATDDYAVPPPRSSKPTPAPKPQGLILPESGTTAGSGSKGSDTALYSQVQKSGTPGRWDCGLSRVGNDRVGVKSEGST", "length": 480 }, "evidence": [ { "id": "F1SNV8", "url": "https://omabrowser.org/oma/group/F1SNV8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99704-1", "protein_name": "Docking protein 1", "gene_name": "DOK1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDGAVMEGPLFLQSQRFGTKRWRKTWAVLYPASPHGVARLEFFDHKGSSSGGGRGSSRRLDCKVIRLAECVSVAPVTVETPPEPGATAFRLDTAQRSHLLAADAPSSAAWVQTLCRNAFPKGSWTLAPTDNPPKLSALEMLENSLYSPTWEGSQFWVTVQRTEAAERCGLHGSYVLRVEAERLTLLTVGAQSQILEPLLSWPYTLLRRYGRDKVMFSFEAGRRCPSGPGTFTFQTAQGNDIFQAVETAIHRQKAQGKAGQGHDVLRADSHEGEVAEGKLPSPPGPQELLDSPPALYAEPLDSLRIAPCPSQDSLYSDPLDSTSAQAGEGVQRKKPLYWDLYEHAQQQLLKAKLTDPKEDPIYDEPEGLAPVPPQGLYDLPREPKDAWWCQARVKEEGYELPYNPATDDYAVPPPRSTKPLLAPKPQGPAFPEPGTATGSGIKSHNSALYSQVQKSGASGSWDCGLSRVGTDKTGVKSEGST", "length": 481 }, "evidence": [ { "id": "F1SNV8", "url": "https://omabrowser.org/oma/group/F1SNV8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SNV8", "url": "https://www.uniprot.org/uniprotkb/F1SNV8" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SNV8", "url": "https://www.uniprot.org/uniprotkb/F1SNV8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "F1SNV8", "url": "https://www.uniprot.org/uniprotkb/F1SNV8" } ], "pmid": "" }, { "name": "Ras protein signal transduction", "id": "GO:0007265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007265", "evidence": [ { "database": "UniProtKB", "id": "F1SNV8", "url": "https://www.uniprot.org/uniprotkb/F1SNV8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling adaptor activity", "id": "GO:0035591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035591", "evidence": [ { "database": "UniProtKB", "id": "F1SNV8", "url": "https://www.uniprot.org/uniprotkb/F1SNV8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNV8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 483, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNV8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNV8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNV8" }, { "id": "PS51064", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51064" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IRS-type PTB", "eco_id": "ECO_0000259", "start_pos": 151, "end_pos": 259, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 322 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNW5-1", "uniprot_ac": "F1SNW5", "uniprot_id": "F1SNW5_PIG", "mass": { "chemical_mass": 40418.0, "monoisotopic_mass": 40418.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Peptidase S1 domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SNW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNW5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNW5", "url": "https://www.uniprot.org/uniprotkb/F1SNW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SNW5", "locus": {} } ], "crossref": [ { "id": "F1SNW5", "url": "https://alphafold.ebi.ac.uk/entry/F1SNW5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011324", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011324", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24253:SF159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24253:SF159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SNW5", "url": "https://www.uniprot.org/uniprotkb/F1SNW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNW5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFLGVLSSCGGSMGLLLWLLVLQLWLSEAWVGGEGAQGGLVPPSPSPPTSGGGLEGPGAPGWRLPPGGVPGTSGSPESGMTAVDPNLVEFSPSDSDSNKALPSLNAPAPGGTKETQIVGGSPARARKWPWQVSLQVNDQHMCGGSLIANRWVLTAAHCILGHVEYTVKMGDIHLMNLSGMAVKIPVRDIVIHKYYNPVGLIENDIALALLDFPVNYSSHIQPVCLPEKTFMVQADTECWVTGWGKVDERGNSPLLLQEAELSILRYEKCNEVLKDKMESRLDVVKKGVVCGTSSRGKDSCQGDSGGPLVCEFNDSWVQVGIVSWGIGCGLRGYPGIYTEVSFYKDWVIARMSQASPLDSKGFFSIPLCLVLLDLLATP", "length": 379, "header": "tr|F1SNW5-1|F1SNW5_PIG Isoform 1 of Peptidase S1 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=5 CANONICAL=F1SNW5-1" }, "isoforms": [ { "isoform_ac": "F1SNW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SNW5/entry#F1SNW5-1", "sequence": { "sequence": "MAFLGVLSSCGGSMGLLLWLLVLQLWLSEAWVGGEGAQGGLVPPSPSPPTSGGGLEGPGAPGWRLPPGGVPGTSGSPESGMTAVDPNLVEFSPSDSDSNKALPSLNAPAPGGTKETQIVGGSPARARKWPWQVSLQVNDQHMCGGSLIANRWVLTAAHCILGHVEYTVKMGDIHLMNLSGMAVKIPVRDIVIHKYYNPVGLIENDIALALLDFPVNYSSHIQPVCLPEKTFMVQADTECWVTGWGKVDERGNSPLLLQEAELSILRYEKCNEVLKDKMESRLDVVKKGVVCGTSSRGKDSCQGDSGGPLVCEFNDSWVQVGIVSWGIGCGLRGYPGIYTEVSFYKDWVIARMSQASPLDSKGFFSIPLCLVLLDLLATP", "length": 379, "header": "tr|F1SNW5-1|F1SNW5_PIG Isoform 1 of Peptidase S1 domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=5 CANONICAL=F1SNW5-1" }, "locus": { "chromosome": "13", "start_pos": 29703622, "end_pos": 29699926, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012399.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012399.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012075.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012075.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNW5", "url": "https://www.uniprot.org/uniprotkb/F1SNW5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1SNW5", "url": "https://www.uniprot.org/uniprotkb/F1SNW5" } ], "pmid": "" }, { "name": "serine-type peptidase activity", "id": "GO:0008236", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008236", "evidence": [ { "database": "UniProtKB", "id": "F1SNW5", "url": "https://www.uniprot.org/uniprotkb/F1SNW5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SNW5", "url": "https://www.uniprot.org/uniprotkb/F1SNW5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SNW5", "url": "https://www.uniprot.org/uniprotkb/F1SNW5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "F1SNW5", "url": "https://www.uniprot.org/uniprotkb/F1SNW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNW5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 379, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNW5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNW5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNW5" }, { "id": "PS50240", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50240" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 118, "end_pos": 353, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 177, "end_pos": 179 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 314, "end_pos": 316 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNX3-1", "uniprot_ac": "F1SNX3", "uniprot_id": "F1SNX3_PIG", "mass": { "chemical_mass": 48178.0, "monoisotopic_mass": 48178.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Catenin alpha-2", "type": "recommended", "evidence": [ { "id": "F1SNX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNX3/entry#names_and_taxonomy" } ] }, { "name": "Alpha N-catenin", "type": "synonym", "evidence": [ { "id": "F1SNX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNX3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SNX3", "locus": {} } ], "crossref": [ { "id": "F1SNX3", "url": "https://alphafold.ebi.ac.uk/entry/F1SNX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008250", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008250", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000633", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000633", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001033", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001033", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006077", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006077", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18914", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18914", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18914:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18914:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01044", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01044", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SNX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSATSPIILKWDPKSLEIRTLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISNAAQATSPTDEAKGHTGIGELAAALNEFDNKIILDPMTFSEARFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMNNVSPGLPARAFRWGFWCAIWWLHGEPTQRGKRPGDPLSLVKPKSYFGESGLDVVSECIGRLEEIGERGFIGKLWLFAWVISGSF", "length": 435, "header": "tr|F1SNX3-1|F1SNX3_PIG Isoform 1 of Catenin alpha-2 OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F1SNX3-1" }, "isoforms": [ { "isoform_ac": "F1SNX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SNX3/entry#F1SNX3-1", "sequence": { "sequence": "MTSATSPIILKWDPKSLEIRTLTVERLLEPLVTQVTTLVNTSNKGPSGKKKGRSKKAHVLAASVEQATQNFLEKGEQIAKESQDLKEELVAAVEDVRKQGETMRIASSEFADDPCSSVKRGTMVRAARALLSAVTRLLILADMADVMRLLSHLKIVEEALEAVKNATNEQDLANRFKEFGKEMVKLNYVAARRQQELKDPHCRDEMAAARGALKKNATMLYTASQAFLRHPDVAATRANRDYVFKQVQEAIAGISNAAQATSPTDEAKGHTGIGELAAALNEFDNKIILDPMTFSEARFRPSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMNNVSPGLPARAFRWGFWCAIWWLHGEPTQRGKRPGDPLSLVKPKSYFGESGLDVVSECIGRLEEIGERGFIGKLWLFAWVISGSF", "length": 435, "header": "tr|F1SNX3-1|F1SNX3_PIG Isoform 1 of Catenin alpha-2 OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F1SNX3-1" }, "locus": { "chromosome": "3", "start_pos": 64267231, "end_pos": 63978082, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009040.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009040.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008813.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008813.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" }, { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "F1SNX3", "url": "https://www.uniprot.org/uniprotkb/F1SNX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 352, "end_pos": 354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNX3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 435, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNX3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNX3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 165, "end_pos": 167 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 352, "end_pos": 354 }, { "start_pos": 40, "end_pos": 42 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SNX9-1", "uniprot_ac": "F1SNX9", "uniprot_id": "F1SNX9_PIG", "mass": { "chemical_mass": 52831.0, "monoisotopic_mass": 52831.0 }, "refseq": {}, "gene_names": [ { "name": "NPTXR", "type": "recommended", "evidence": [ { "id": "F1SNX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ] } ], "protein_names": [ { "name": "Neuronal pentraxin receptor", "type": "synonym", "evidence": [ { "id": "F1SNX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNX9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NPTXR", "url": "https://www.uniprot.org/uniprotkb/F1SNX9", "locus": { "chromosome": "5", "start_pos": 9230355, "end_pos": 9207642, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000092", "url": "https://www.ensembl.org/id/ENSSSCG00000000092" } ] } } ], "crossref": [ { "id": "F1SNX9", "url": "https://alphafold.ebi.ac.uk/entry/F1SNX9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000092", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000092", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00152", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00152", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19277:SF94", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19277:SF94", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00354", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00354", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SNX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFLVLLAAGMLAFLGAVICIIASVPLAASPARALPGGADNASAASAAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPVPLFSRFLCTPLAAACPSGTEQGDAAPGEREELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQDPGPRRDAMADGPWDSPALILELEDAVRALRDRIDRIEQELPVRVNLSAAPAPAPVVPTALHSKMDELEGQLLAKVLALEKERVALSHSSQQQRQEVEKELDALQDRVAELEHGSSAYSPPDAFKISIPIRNNYMYARVRKALPELYAFTVCMWLRSRSGGTGQGTPFSYSVPEQANEIVLLEAGHDPMELLINDKVAQLPLSLKDSGWHHICIAWTTRDGLWSAYQDGELRGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGLANCTGPLLGNILPWEDKLVEVFGGATKATFDVCQGRAKA", "length": 496, "header": "tr|F1SNX9-1|F1SNX9_PIG Isoform 1 of Neuronal pentraxin receptor OS=Sus scrofa OX=9823 GN=NPTXR PE=4 SV=5 CANONICAL=F1SNX9-1" }, "isoforms": [ { "isoform_ac": "F1SNX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SNX9/entry#F1SNX9-1", "sequence": { "sequence": "MKFLVLLAAGMLAFLGAVICIIASVPLAASPARALPGGADNASAASAAAASPGPQRSLSALHGAGGSAGPPALPGAPAASAHPLPPVPLFSRFLCTPLAAACPSGTEQGDAAPGEREELLLLQSTAEQLRQTALQQEARIRADQDTIRELTGKLGRCESGLPRGLQDPGPRRDAMADGPWDSPALILELEDAVRALRDRIDRIEQELPVRVNLSAAPAPAPVVPTALHSKMDELEGQLLAKVLALEKERVALSHSSQQQRQEVEKELDALQDRVAELEHGSSAYSPPDAFKISIPIRNNYMYARVRKALPELYAFTVCMWLRSRSGGTGQGTPFSYSVPEQANEIVLLEAGHDPMELLINDKVAQLPLSLKDSGWHHICIAWTTRDGLWSAYQDGELRGSGENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGLANCTGPLLGNILPWEDKLVEVFGGATKATFDVCQGRAKA", "length": 496, "header": "tr|F1SNX9-1|F1SNX9_PIG Isoform 1 of Neuronal pentraxin receptor OS=Sus scrofa OX=9823 GN=NPTXR PE=4 SV=5 CANONICAL=F1SNX9-1" }, "locus": { "chromosome": "5", "start_pos": 9226381, "end_pos": 9207642, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000098.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000098.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000096.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000096.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" }, { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" }, { "name": "response to hydrogen peroxide", "id": "GO:0042542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042542", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" }, { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" }, { "name": "protein phosphatase binding", "id": "GO:0019903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019903", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" }, { "name": "pentraxin receptor activity", "id": "GO:0008029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008029", "evidence": [ { "database": "UniProtKB", "id": "F1SNX9", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 212, "end_pos": 214, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 459, "end_pos": 461, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SNX9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 496, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SNX9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SNX9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SNX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SNX9" }, { "id": "PS51828", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51828" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pentraxin (PTX)", "eco_id": "ECO_0000259", "start_pos": 288, "end_pos": 490, "start_aa": "Asp", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 212, "end_pos": 214 }, { "start_pos": 41, "end_pos": 43 }, { "start_pos": 459, "end_pos": 461 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP28-1", "uniprot_ac": "F1SP28", "uniprot_id": "F1SP28_PIG", "mass": { "chemical_mass": 20427.0, "monoisotopic_mass": 20427.0 }, "refseq": {}, "gene_names": [ { "name": "ABITRAM", "type": "recommended", "evidence": [ { "id": "F1SP28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ] } ], "protein_names": [ { "name": "Protein Abitram", "type": "recommended", "evidence": [ { "id": "F1SP28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP28/entry#names_and_taxonomy" } ] }, { "name": "Actin-binding transcription modulator", "type": "synonym", "evidence": [ { "id": "F1SP28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP28/entry#names_and_taxonomy" } ] }, { "name": "Protein Simiate", "type": "synonym", "evidence": [ { "id": "F1SP28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP28/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ABITRAM", "url": "https://www.uniprot.org/uniprotkb/F1SP28", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000005440", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005440", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156819", "url": "https://www.ncbi.nlm.nih.gov/gene/100156819", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156819", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156819", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKACEDH", "url": "https://omabrowser.org/oma/group/GKACEDH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SP28", "url": "https://www.orthodb.org/?gene=F1SP28", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13651", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13651", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13651:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13651:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01597", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01597", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP28-1", "url": "https://www.uniprot.org/uniprotkb/F1SP28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATEPETPVAVADPAVPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKTIESISYQISTNCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNEDILHKPSILQEKPSTEGYIAVVLPKFEESKSVTEGLLTQQQYEEVLASRANATSATA", "length": 185, "header": "tr|F1SP28-1|F1SP28_PIG Isoform 1 of Protein Abitram OS=Sus scrofa OX=9823 GN=ABITRAM PE=3 SV=2 CANONICAL=F1SP28-1" }, "isoforms": [ { "isoform_ac": "F1SP28-1", "url": "https://www.uniprot.org/uniprotkb/F1SP28/entry#F1SP28-1", "sequence": { "sequence": "MATEPETPVAVADPAVPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKTIESISYQISTNCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNEDILHKPSILQEKPSTEGYIAVVLPKFEESKSVTEGLLTQQQYEEVLASRANATSATA", "length": 185, "header": "tr|F1SP28-1|F1SP28_PIG Isoform 1 of Protein Abitram OS=Sus scrofa OX=9823 GN=ABITRAM PE=3 SV=2 CANONICAL=F1SP28-1" }, "locus": { "chromosome": "1", "start_pos": 249905298, "end_pos": 249899860, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005984.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005984.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005835.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005835.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156819", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156819", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4AE08-1", "protein_name": "Protein Abitram", "gene_name": "Abitram", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEELPCPEAGVVAPEVVMSTEPPAPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKTIKSISYQISNNCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCIRGRLMEVNENILHQPSLLQEKPSTEGYIAVVLPKFEESKSITEGLLTQQQYEEVLVKRTDATTVTS", "length": 193 }, "evidence": [ { "id": "F1SP28", "url": "https://omabrowser.org/oma/group/F1SP28/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3H9F6-1", "protein_name": "Protein Abitram", "gene_name": "Abitram", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEELGYPEAGLTGPEVAVATEPAAPSLVDRYFTRWYKADVKGKPSEDHCILQHSNRICVITLAGSHPVLQSGKTIKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAPLCKIHCSDGEEYTISSCVRGRLMEVNENILHQPSLLQEKPSTEGYIAVVLPKFEESKSITEGLLTQQQYEEVIVKRNNPTATS", "length": 192 }, "evidence": [ { "id": "F1SP28", "url": "https://omabrowser.org/oma/group/F1SP28/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q1LU93-1", "protein_name": "Protein Abitram", "gene_name": "abitram", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKEEKKAPSVIDRYFTRWYRTDLKGKPCEDHCILQHSNRICVITLAESHPIFQNGRKIKNINYQISDGCSRLKNKVSGKSKRGGQFLTEFAPLCRITCTDEQEFTIFSCIRGRLLEVNEVILNKPDLLMEKPSTEGYIAVILPKFEESKSVTEGLLTREQYEEILTKRNQQEVPC", "length": 177 }, "evidence": [ { "id": "F1SP28", "url": "https://omabrowser.org/oma/group/F1SP28/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q29S16-1", "protein_name": "Protein Abitram", "gene_name": "ABITRAM", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTTEPKDPVADLAPEPAVPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKTIKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNENILHKPSILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKEYEEVVVKRLRATTAAS", "length": 187 }, "evidence": [ { "id": "F1SP28", "url": "https://omabrowser.org/oma/group/F1SP28/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54TD9-1", "protein_name": "Protein Abitram", "gene_name": "abitram", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRTLIERYYSQYYFIDTTITDPNLTEDQYVNQHTNELAVIGVAPSHPVLQQEISKIEFKENAINNEVSGVRKTGGFKLQSNTILCVITCSNGKEYFLRSCIKGKLLEINKELINNPSLLKTNHATSGFLAIVEPMIKDKFMENPGLIKFEEYHKLRNIPIQKGPVFLKDNTNDED", "length": 175 }, "evidence": [ { "id": "F1SP28", "url": "https://omabrowser.org/oma/group/F1SP28/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q80ZQ9-1", "protein_name": "Protein Abitram", "gene_name": "Abitram", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEELRCPEAKLAPPEVVIATEAPPPSLVDRYFTRWYKADVKGKPCEDHCILQHSNRICVITLAGSHPVLQSGKAIQRISYQISNNCSRLENKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTISSCVRGRLMEVNENILHQPSLLQEKPSTEGYIAVVLPKFEESKSVTEGLLTQQQYEEVVVKRTNATATTP", "length": 193 }, "evidence": [ { "id": "F1SP28", "url": "https://omabrowser.org/oma/group/F1SP28/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NX38-1", "protein_name": "Protein Abitram", "gene_name": "ABITRAM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATEPEAAEPVVPSLVDRYFTRWYKPDVKGKFCEDHCILQHSNRICVITLAESHPVLQSGKTIKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAPLCKIYCSDGEEYTVSSCVRGRLMEVNENILHKPSILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKQYEEVMVKRINATTATS", "length": 181 }, "evidence": [ { "id": "F1SP28", "url": "https://omabrowser.org/oma/group/F1SP28/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "actin monomer binding", "id": "GO:0003785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003785", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" }, { "name": "growth cone", "id": "GO:0030426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030426", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" }, { "name": "filopodium tip", "id": "GO:0032433", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032433", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "dendrite morphogenesis", "id": "GO:0048813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048813", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" }, { "name": "regulation of filopodium assembly", "id": "GO:0051489", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051489", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" }, { "name": "regulation of actin filament polymerization", "id": "GO:0030833", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030833", "evidence": [ { "database": "UniProtKB", "id": "F1SP28", "url": "https://www.uniprot.org/uniprotkb/F1SP28" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 179, "end_pos": 181 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP57-1", "uniprot_ac": "F1SP57", "uniprot_id": "F1SP57_PIG", "mass": { "chemical_mass": 34969.0, "monoisotopic_mass": 34969.0 }, "refseq": { "ac": "XP_020922656", "name": "olfactory receptor 13D1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922656" }, "gene_names": [ { "name": "LOC100739528", "type": "recommended", "evidence": [ { "id": "F1SP57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP57" } ] }, { "name": "LOC100739528", "type": "synonym", "evidence": [ { "id": "XP_020922656", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922656" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SP57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP57/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 13D1-like", "type": "synonym", "evidence": [ { "id": "XP_020922656", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922656" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100739528", "url": "https://www.uniprot.org/uniprotkb/F1SP57", "locus": {} } ], "crossref": [ { "id": "F1SP57", "url": "https://alphafold.ebi.ac.uk/entry/F1SP57", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005420", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005420", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15430", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15430", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100739528", "url": "https://www.ncbi.nlm.nih.gov/gene/100739528", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739528", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739528", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SP57", "url": "https://www.orthodb.org/?gene=F1SP57", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922656", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922656", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP57-1", "url": "https://www.uniprot.org/uniprotkb/F1SP57-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNYSAVTEFFLVGLSQYPELQFCLFVLCLIMYMIILLGNSLLIIISILDSRLHTPMYFFLGNLSFLDICYTSSSIPPMLIIFRSGRKSISFVGCALQMVVSLGLGSTECVLLAVMAYDRYVAICNPLRYPIIMNRVLYVHMAAWSWIIGCLNSLVQTVLTVVLPFCGNNIIDHLTCEILALLKLTCSDITVNVIVMTVASVVLLVIPLLLIFISYVFILSSILRINSAEGRKKAFSTCSAHLTVVILFYGSALFMYMKPKSKDTKASDEIIGLSYGVVTPMLNPIIYSLRNKEVKEAGKKVLSRHLHLWKM", "length": 312, "header": "tr|F1SP57-1|F1SP57_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100739528 PE=3 SV=4 CANONICAL=F1SP57-1" }, "isoforms": [ { "isoform_ac": "F1SP57-1", "url": "https://www.uniprot.org/uniprotkb/F1SP57/entry#F1SP57-1", "sequence": { "sequence": "MRNYSAVTEFFLVGLSQYPELQFCLFVLCLIMYMIILLGNSLLIIISILDSRLHTPMYFFLGNLSFLDICYTSSSIPPMLIIFRSGRKSISFVGCALQMVVSLGLGSTECVLLAVMAYDRYVAICNPLRYPIIMNRVLYVHMAAWSWIIGCLNSLVQTVLTVVLPFCGNNIIDHLTCEILALLKLTCSDITVNVIVMTVASVVLLVIPLLLIFISYVFILSSILRINSAEGRKKAFSTCSAHLTVVILFYGSALFMYMKPKSKDTKASDEIIGLSYGVVTPMLNPIIYSLRNKEVKEAGKKVLSRHLHLWKM", "length": 312, "header": "tr|F1SP57-1|F1SP57_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100739528 PE=3 SV=4 CANONICAL=F1SP57-1" }, "locus": { "chromosome": "1", "start_pos": 246079489, "end_pos": 246078554, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005963.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005963.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005816.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005816.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739528", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739528", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SP57", "url": "https://www.uniprot.org/uniprotkb/F1SP57" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP57-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP57-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP57" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP57" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP58-1", "uniprot_ac": "F1SP58", "uniprot_id": "F1SP58_PIG", "mass": { "chemical_mass": 34988.0, "monoisotopic_mass": 34988.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100739563", "type": "recommended", "evidence": [ { "id": "F1SP58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP58" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SP58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP58/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100739563", "url": "https://www.uniprot.org/uniprotkb/F1SP58", "locus": {} } ], "crossref": [ { "id": "F1SP58", "url": "https://alphafold.ebi.ac.uk/entry/F1SP58", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005419", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005419", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15430", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15430", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP58-1", "url": "https://www.uniprot.org/uniprotkb/F1SP58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SEMRNYSAVTEFFLVGLSQYPELQFCLFVLCLIMYMIILLGNSLLIIISILDSRLHTPMYFFLGNLSFLDICYTSSSIPPMLIIFSGRKSISFVGCALQMVVSLGLGSTECVLLAVMAYDRYVAICNPLRYPIIMNRVLYVHMAAWSWIIGCLTSLLQTVLTMVLPFCGNNIIDHITCEILALLKLTCSDITVNVIVMTVTNIVLLVIPLLLIFISYVFILSSILRINSTEGRKKAFSTCSAHLTVVILFYGSALFMYMKPKSKGTNASDEIIGLSYGVVTPMLNPIIYSLRNKEVKEAGKKVLTRYLPLLKT", "length": 313, "header": "tr|F1SP58-1|F1SP58_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100739563 PE=3 SV=4 CANONICAL=F1SP58-1" }, "isoforms": [ { "isoform_ac": "F1SP58-1", "url": "https://www.uniprot.org/uniprotkb/F1SP58/entry#F1SP58-1", "sequence": { "sequence": "SEMRNYSAVTEFFLVGLSQYPELQFCLFVLCLIMYMIILLGNSLLIIISILDSRLHTPMYFFLGNLSFLDICYTSSSIPPMLIIFSGRKSISFVGCALQMVVSLGLGSTECVLLAVMAYDRYVAICNPLRYPIIMNRVLYVHMAAWSWIIGCLTSLLQTVLTMVLPFCGNNIIDHITCEILALLKLTCSDITVNVIVMTVTNIVLLVIPLLLIFISYVFILSSILRINSTEGRKKAFSTCSAHLTVVILFYGSALFMYMKPKSKGTNASDEIIGLSYGVVTPMLNPIIYSLRNKEVKEAGKKVLTRYLPLLKT", "length": 313, "header": "tr|F1SP58-1|F1SP58_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100739563 PE=3 SV=4 CANONICAL=F1SP58-1" }, "locus": { "chromosome": "1", "start_pos": 246062988, "end_pos": 246062050, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005962.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005962.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005815.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005815.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SP58", "url": "https://www.uniprot.org/uniprotkb/F1SP58" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP58-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP58-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP58" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP58" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 289, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 228, "end_pos": 230 }, { "start_pos": 267, "end_pos": 269 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP63-1", "uniprot_ac": "F1SP63", "uniprot_id": "F1SP63_PIG", "mass": { "chemical_mass": 34890.0, "monoisotopic_mass": 34890.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SP63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP63/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP63", "url": "https://www.uniprot.org/uniprotkb/F1SP63#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP63", "url": "https://www.uniprot.org/uniprotkb/F1SP63" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SP63", "locus": {} } ], "crossref": [ { "id": "F1SP63", "url": "https://alphafold.ebi.ac.uk/entry/F1SP63", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050700", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050700", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SP63", "url": "https://www.uniprot.org/uniprotkb/F1SP63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP63-1", "url": "https://www.uniprot.org/uniprotkb/F1SP63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGYGLCSTNLTVISDFIFLGFSHYPNAEVIIFVLCLLMYLTTVLGNIILISVSVLDSRLHTPMYFFLSNLSFLDIWYTSSALTPMLANFVAGKNTISFSGCAAQMYFSLAMGSTECVLLSLMAYDRYVAICNPLRYPIIMNKRVCVQIAAGSWVTGCFTALVETVSVLQLSLCGNSIINHFTCEILAVLKLVCGDTSKVEFIMLVISVLLLPMPMLLVCISYGFIVSSIVRISSVDGRSKAFSTCAAHLTVVVLFYGTALSMYLKPSAVDSQEIDKFMALVYGGLTPMLNPIIYSLRNKEVKVAVNKLLARNSLFISI", "length": 318, "header": "tr|F1SP63-1|F1SP63_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=5 CANONICAL=F1SP63-1" }, "isoforms": [ { "isoform_ac": "F1SP63-1", "url": "https://www.uniprot.org/uniprotkb/F1SP63/entry#F1SP63-1", "sequence": { "sequence": "MGYGLCSTNLTVISDFIFLGFSHYPNAEVIIFVLCLLMYLTTVLGNIILISVSVLDSRLHTPMYFFLSNLSFLDIWYTSSALTPMLANFVAGKNTISFSGCAAQMYFSLAMGSTECVLLSLMAYDRYVAICNPLRYPIIMNKRVCVQIAAGSWVTGCFTALVETVSVLQLSLCGNSIINHFTCEILAVLKLVCGDTSKVEFIMLVISVLLLPMPMLLVCISYGFIVSSIVRISSVDGRSKAFSTCAAHLTVVVLFYGTALSMYLKPSAVDSQEIDKFMALVYGGLTPMLNPIIYSLRNKEVKVAVNKLLARNSLFISI", "length": 318, "header": "tr|F1SP63-1|F1SP63_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=5 CANONICAL=F1SP63-1" }, "locus": { "chromosome": "1", "start_pos": 245946086, "end_pos": 245944409, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005957.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005957.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005810.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005810.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP63", "url": "https://www.uniprot.org/uniprotkb/F1SP63" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SP63", "url": "https://www.uniprot.org/uniprotkb/F1SP63" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SP63", "url": "https://www.uniprot.org/uniprotkb/F1SP63" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP63", "url": "https://www.uniprot.org/uniprotkb/F1SP63" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SP63", "url": "https://www.uniprot.org/uniprotkb/F1SP63" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" }, { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP63-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP63-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP63" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP63", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP63" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 294, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 69, "end_pos": 71 }, { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP64-1", "uniprot_ac": "F1SP64", "uniprot_id": "F1SP64_PIG", "mass": { "chemical_mass": 36148.0, "monoisotopic_mass": 36148.0 }, "refseq": { "ac": "XP_020931328", "name": "olfactory receptor 13D1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931328" }, "gene_names": [ { "name": "LOC100520168", "type": "recommended", "evidence": [ { "id": "F1SP64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP64" } ] }, { "name": "LOC100520168", "type": "synonym", "evidence": [ { "id": "XP_020931328", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931328" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SP64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP64/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 13D1-like", "type": "synonym", "evidence": [ { "id": "XP_020931328", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931328" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100520168", "url": "https://www.uniprot.org/uniprotkb/F1SP64", "locus": {} } ], "crossref": [ { "id": "F1SP64", "url": "https://alphafold.ebi.ac.uk/entry/F1SP64", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005413", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005413", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15430", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15430", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520168", "url": "https://www.ncbi.nlm.nih.gov/gene/100520168", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520168", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520168", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VSYTMGS", "url": "https://omabrowser.org/oma/group/VSYTMGS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SP64", "url": "https://www.orthodb.org/?gene=F1SP64", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020931328", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931328", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP64-1", "url": "https://www.uniprot.org/uniprotkb/F1SP64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERTNWTEIEFILQGLSEYPRAEKFLFVICLVMYLVILLGNSTLIILTLLDARLHTPMYFFLGNLSFLDIWYTSSFIPSMLIHFLSEKKSISFTRCVVQMSVSYTMGSTECVLLAVMAYDRYVAICIPLRYPIIMSKALCIQMAALSWGLGFLNSLTETILAVRLPFCGKNAINHFVCEILAFVKLACTDISLNEITIMLGNVLFLFSPLLLICVSYIFILSTVLRINSAEGRKKAFSTCSAHVTVVTVFYGTILFMYMKPKSKDSAFDKLIALFYGVVTPMLNPIIYSLRNTEVHGAMRKLMTRLVWEERMRNLHL", "length": 317, "header": "tr|F1SP64-1|F1SP64_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100520168 PE=3 SV=2 CANONICAL=F1SP64-1" }, "isoforms": [ { "isoform_ac": "F1SP64-1", "url": "https://www.uniprot.org/uniprotkb/F1SP64/entry#F1SP64-1", "sequence": { "sequence": "MERTNWTEIEFILQGLSEYPRAEKFLFVICLVMYLVILLGNSTLIILTLLDARLHTPMYFFLGNLSFLDIWYTSSFIPSMLIHFLSEKKSISFTRCVVQMSVSYTMGSTECVLLAVMAYDRYVAICIPLRYPIIMSKALCIQMAALSWGLGFLNSLTETILAVRLPFCGKNAINHFVCEILAFVKLACTDISLNEITIMLGNVLFLFSPLLLICVSYIFILSTVLRINSAEGRKKAFSTCSAHVTVVTVFYGTILFMYMKPKSKDSAFDKLIALFYGVVTPMLNPIIYSLRNTEVHGAMRKLMTRLVWEERMRNLHL", "length": 317, "header": "tr|F1SP64-1|F1SP64_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100520168 PE=3 SV=2 CANONICAL=F1SP64-1" }, "locus": { "chromosome": "1", "start_pos": 245943127, "end_pos": 245942177, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005956.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005956.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005809.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005809.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520168", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520168", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G5E6E9-1", "protein_name": "Olfactory receptor", "gene_name": "OR13D2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MERTNWTDIEFILQGLSEYPRAEKLLFAMCLLMYLVILLGNSTLIILTLLDSYLHTPMYFFLCHLSFLDIWYTSSFIPSMLIHFLSEKKTISFTRCVVQMSVSYTMGSTECVLLAVMAYDRSIAICNPLRYPIIINKALCIQMAAVSWGLGFLNSLTETILAVQLPFCGKNLINHFVCEILAFVKLACTDISLNEITIMLGNVIFLFVPLLLICISYIFILSTVLRINSAEGRKKAFSTCSAHIMVVTVFYGTILFMYMKPKSKDATFDKLIALFYGVVTPMLNPIIYSLRNTEVRGAMRKLTARLVLEERMRNLHL", "length": 317 }, "evidence": [ { "id": "F1SP64", "url": "https://omabrowser.org/oma/group/F1SP64/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SP64", "url": "https://www.uniprot.org/uniprotkb/F1SP64" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP64-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 317, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP64-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP64" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP64" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 41, "end_pos": 43 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP66-1", "uniprot_ac": "F1SP66", "uniprot_id": "F1SP66_PIG", "mass": { "chemical_mass": 35554.0, "monoisotopic_mass": 35554.0 }, "refseq": {}, "gene_names": [ { "name": "OR13C3", "type": "recommended", "evidence": [ { "id": "F1SP66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP66" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SP66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP66/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR13C3", "url": "https://www.uniprot.org/uniprotkb/F1SP66", "locus": { "chromosome": "1", "start_pos": 245898073, "end_pos": 245899026, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026865", "url": "https://www.ensembl.org/id/ENSSSCG00000026865" } ] } } ], "crossref": [ { "id": "F1SP66", "url": "https://alphafold.ebi.ac.uk/entry/F1SP66", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15430", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15430", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157720", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157720", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SP66", "url": "https://www.orthodb.org/?gene=F1SP66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP66-1", "url": "https://www.uniprot.org/uniprotkb/F1SP66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKTNQTFLLEFLLLGLSGYPKIEIVYFALILVMYLVILIGNGVLIIASIFDFRLHTPMYFFLGNLSFLDICYTSSSVPSTLVSLISKKRNISFCGCAVQMFLGFAMGSTECLLLGVMAFDRYVAICNPLRYPIIMSKVVYVLMASVSWFSGGVNSIVQTALAMQLPFCENNIINHFTCEILAVLKLACADISLNIITMVISNIAFLVLPLLVIFFSYMFILYTILRMSSATGRRKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQELPGESKLQTIDKLISLFYGVVTPMLNPIIYSLRNKDVKAAVKYLLNRKLIQ", "length": 317, "header": "tr|F1SP66-1|F1SP66_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR13C3 PE=3 SV=4 CANONICAL=F1SP66-1" }, "isoforms": [ { "isoform_ac": "F1SP66-1", "url": "https://www.uniprot.org/uniprotkb/F1SP66/entry#F1SP66-1", "sequence": { "sequence": "MDKTNQTFLLEFLLLGLSGYPKIEIVYFALILVMYLVILIGNGVLIIASIFDFRLHTPMYFFLGNLSFLDICYTSSSVPSTLVSLISKKRNISFCGCAVQMFLGFAMGSTECLLLGVMAFDRYVAICNPLRYPIIMSKVVYVLMASVSWFSGGVNSIVQTALAMQLPFCENNIINHFTCEILAVLKLACADISLNIITMVISNIAFLVLPLLVIFFSYMFILYTILRMSSATGRRKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQELPGESKLQTIDKLISLFYGVVTPMLNPIIYSLRNKDVKAAVKYLLNRKLIQ", "length": 317, "header": "tr|F1SP66-1|F1SP66_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR13C3 PE=3 SV=4 CANONICAL=F1SP66-1" }, "locus": { "chromosome": "1", "start_pos": 245899026, "end_pos": 245898076, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005954.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005954.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005807.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005807.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157720", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157720", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SP66", "url": "https://www.uniprot.org/uniprotkb/F1SP66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP66-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 317, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP66-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP66" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP66" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 296, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP69-1", "uniprot_ac": "F1SP69", "uniprot_id": "F1SP69_PIG", "mass": { "chemical_mass": 35646.0, "monoisotopic_mass": 35646.0 }, "refseq": {}, "gene_names": [ { "name": "OR13C4", "type": "recommended", "evidence": [ { "id": "F1SP69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP69" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SP69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP69/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR13C4", "url": "https://www.uniprot.org/uniprotkb/F1SP69", "locus": { "chromosome": "1", "start_pos": 245856177, "end_pos": 245857133, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026768", "url": "https://www.ensembl.org/id/ENSSSCG00000026768" } ] } } ], "crossref": [ { "id": "F1SP69", "url": "https://alphafold.ebi.ac.uk/entry/F1SP69", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15430", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15430", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152911", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152911", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RINKTFV", "url": "https://omabrowser.org/oma/group/RINKTFV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SP69", "url": "https://www.orthodb.org/?gene=F1SP69", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP69-1", "url": "https://www.uniprot.org/uniprotkb/F1SP69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRINQTFVKEFILLGLSGYPKLEIILFALILVMYLVILIGNGVLIIASIFDFRLHTPMYFFLGNLSFLDICYTSSSVPSTLVSLISKKRNISFCGCAVQMFLGFAMGSTECLLLGVMAFDRYVAICNPLRYPIIMSKVVYVLMASVSWFSGGVNSIVQTALAMQLPFCENNIINHFLCEILAVLKLACADISLNFFTLAVSNMVFLVLPLLVIFFSYMFILYTILRMSSATGRRKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQDILGQDSLQAREALISMFYGVVTPMLNPIIYSLRNKDVKAAVKYLLTRKAVNQ", "length": 318, "header": "tr|F1SP69-1|F1SP69_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR13C4 PE=3 SV=3 CANONICAL=F1SP69-1" }, "isoforms": [ { "isoform_ac": "F1SP69-1", "url": "https://www.uniprot.org/uniprotkb/F1SP69/entry#F1SP69-1", "sequence": { "sequence": "MDRINQTFVKEFILLGLSGYPKLEIILFALILVMYLVILIGNGVLIIASIFDFRLHTPMYFFLGNLSFLDICYTSSSVPSTLVSLISKKRNISFCGCAVQMFLGFAMGSTECLLLGVMAFDRYVAICNPLRYPIIMSKVVYVLMASVSWFSGGVNSIVQTALAMQLPFCENNIINHFLCEILAVLKLACADISLNFFTLAVSNMVFLVLPLLVIFFSYMFILYTILRMSSATGRRKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQDILGQDSLQAREALISMFYGVVTPMLNPIIYSLRNKDVKAAVKYLLTRKAVNQ", "length": 318, "header": "tr|F1SP69-1|F1SP69_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=OR13C4 PE=3 SV=3 CANONICAL=F1SP69-1" }, "locus": { "chromosome": "1", "start_pos": 245857133, "end_pos": 245856180, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005951.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005951.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005804.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005804.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152911", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152911", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8NGS5-1", "protein_name": "Olfactory receptor 13C4", "gene_name": "OR13C4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDKINQTFVREFILLGLSGYPKLEIIFFALILVMYVVILIGNGVLIIASILDSRLHMPMYFFLGNLSFLDICYTTSSIPSTLVSLISKKRNISFSGCAVQMFFGFAMGSTECFLLGMMAFDRYVAICNPLRYPIIMNKVVYVLLTSVSWLSGGINSTVQTSLAMRWPFCGNNIINHFLCEILAVLKLACSDISVNIVTLAVSNIAFLVLPLLVIFFSYMFILYTILRTNSATGRHKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQDLLGKDNLQATEGLVSMFYGVVTPMLNPIIYSLRNKDVKAAIKYLLSRKAINQ", "length": 318 }, "evidence": [ { "id": "F1SP69", "url": "https://omabrowser.org/oma/group/F1SP69/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SP69", "url": "https://www.uniprot.org/uniprotkb/F1SP69" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP69-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP69-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP69" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP69" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 296, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP87-1", "uniprot_ac": "F1SP87", "uniprot_id": "F1SP87_PIG", "mass": { "chemical_mass": 16180.0, "monoisotopic_mass": 16180.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F1SP87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP87/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP87", "url": "https://www.uniprot.org/uniprotkb/F1SP87" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SP87", "locus": {} } ], "crossref": [ { "id": "F1SP87", "url": "https://alphafold.ebi.ac.uk/entry/F1SP87", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005121", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005121", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR36874", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36874", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36874:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36874:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15339", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15339", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SP87", "url": "https://www.uniprot.org/uniprotkb/F1SP87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP87-1", "url": "https://www.uniprot.org/uniprotkb/F1SP87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNFILFIVLYGVFSPEISGMDPTYEGPYITPVGEEPKTEQPHTKEEEIKENIPANDKTDDYYKNTKQYVFTTQNPNGTQSEITVRATTDLNFSLRNYKLINETTTLPPPERTENEEEKTTQGPNEPAFWTMLAKGKLIIVR", "length": 141, "header": "tr|F1SP87-1|F1SP87_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F1SP87-1" }, "isoforms": [ { "isoform_ac": "F1SP87-1", "url": "https://www.uniprot.org/uniprotkb/F1SP87/entry#F1SP87-1", "sequence": { "sequence": "MNFILFIVLYGVFSPEISGMDPTYEGPYITPVGEEPKTEQPHTKEEEIKENIPANDKTDDYYKNTKQYVFTTQNPNGTQSEITVRATTDLNFSLRNYKLINETTTLPPPERTENEEEKTTQGPNEPAFWTMLAKGKLIIVR", "length": 141, "header": "tr|F1SP87-1|F1SP87_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F1SP87-1" }, "locus": { "chromosome": "1", "start_pos": 195887762, "end_pos": 195880011, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005645.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005645.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005504.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005504.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP87", "url": "https://www.uniprot.org/uniprotkb/F1SP87" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP87", "url": "https://www.uniprot.org/uniprotkb/F1SP87" } ], "pmid": "" }, { "name": "inner acrosomal membrane", "id": "GO:0002079", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002079", "evidence": [ { "database": "UniProtKB", "id": "F1SP87", "url": "https://www.uniprot.org/uniprotkb/F1SP87" } ], "pmid": "" }, { "name": "outer acrosomal membrane", "id": "GO:0002081", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002081", "evidence": [ { "database": "UniProtKB", "id": "F1SP87", "url": "https://www.uniprot.org/uniprotkb/F1SP87" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "F1SP87", "url": "https://www.uniprot.org/uniprotkb/F1SP87" } ], "pmid": "" }, { "name": "fusion of sperm to egg plasma membrane involved in single fertilization", "id": "GO:0007342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007342", "evidence": [ { "database": "UniProtKB", "id": "F1SP87", "url": "https://www.uniprot.org/uniprotkb/F1SP87" } ], "pmid": "" }, { "name": "acrosomal vesicle exocytosis", "id": "GO:0060478", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060478", "evidence": [ { "database": "UniProtKB", "id": "F1SP87", "url": "https://www.uniprot.org/uniprotkb/F1SP87" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP87-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 141, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP87-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP87" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 76, "end_pos": 78 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP92-1", "uniprot_ac": "F1SP92", "uniprot_id": "F1SP92_PIG", "mass": { "chemical_mass": 241597.0, "monoisotopic_mass": 241597.0 }, "refseq": { "ac": "XP_005670259", "name": "basic helix-loop-helix domain-containing protein USF3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670259" }, "gene_names": [ { "name": "USF3", "type": "recommended", "evidence": [ { "id": "F1SP92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP92" } ] }, { "name": "KIAA2018", "type": "synonym", "evidence": [ { "id": "XP_005670259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670259" } ] }, { "name": "USF3", "type": "synonym", "evidence": [ { "id": "XP_005670259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670259" } ] } ], "protein_names": [ { "name": "Upstream transcription factor family member 3", "type": "synonym", "evidence": [ { "id": "F1SP92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP92/entry#names_and_taxonomy" } ] }, { "name": "basic helix-loop-helix domain-containing protein USF3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005670259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670259" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP92", "url": "https://www.uniprot.org/uniprotkb/F1SP92" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "USF3", "url": "https://www.uniprot.org/uniprotkb/F1SP92", "locus": { "chromosome": "13", "start_pos": 146282335, "end_pos": 146230180, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011918", "url": "https://www.ensembl.org/id/ENSSSCG00000011918" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011918", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011918", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18910", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18910", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513627", "url": "https://www.ncbi.nlm.nih.gov/gene/100513627", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CVPDQEV", "url": "https://omabrowser.org/oma/group/CVPDQEV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SP92", "url": "https://www.orthodb.org/?gene=F1SP92", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46970", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46970", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46970:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46970:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005670259", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670259", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SP92", "url": "https://www.uniprot.org/uniprotkb/F1SP92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP92-1", "url": "https://www.uniprot.org/uniprotkb/F1SP92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEMTENETPTKKQHRKKDRETHNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQALKYITELKRQNDELLLNGGNNEQAEEIKKLRKQLEEIQKENGRYIELLKANDICLYDDPTIHWKGNLKNSKVSVVIPSDQVQKNIIVYSNGSQPGGNSQGTAVQGITFNVGHNLQKQTANVVPVQRTCNLVTPVSISGVYPSENKPWHQTTVSALAANQPVPLCLPATISAQNILELSTSESEPSVLVASSGSLIAVPVGPEPPQHRSLLTCLNDQNSSENKSGQESPKVLKKMVPCATSISSTCSAAATKGHHGSKSCLSIQDCRSEFQTIFVVSVTTTVCSQPPRSAGDSRPANTGKGADVTSVTAVVVPSAPGGGKTTTAVSTLSANPMDNGWTLSCSLPSSAVSASDLKNINSLTRISSAGNTQTTWTTLQLAGNTIQPLSQTPSSAVTPVLNESGTSPTTTNHSRHMATGINLNNSCPADGQPVEQVVVTLPSYPSLPMQPLIAQPQVKSQPPKNILPLNSAMQVIQMAQPVGSTVNAAPANQNVIILQPPSTTPCPAVMRAEVPNQTVGQQIVIIQAANQNPLPLLSAPPPGSVRLPVNGATAIIGSNSSVQNVSTPQTFGGKHLVHILPRSSSLSTSNSTPTFSVTMSNQQQPQTISLNGQFFALQPVMSSSGTTSQAPMQIIQPTTSEDPNTNVALNTFGALASLNQSISQMAGQSCVQLPVSQPGNPQTAANSQTTPASCVSLTTTVAPPLTTDSLVTQPSTYNLVTTPSMNTVACLPNGRSKRLNKKPGVKKHSAANKSACPLNAVGDAGKLDCPSTEGPAEPSCHDGLLDGLPVVLPSVTVSQVDSVSVSGSHSLDILNSESVMPESVPKSRSAEESGLPSQDSVTSEHFTMAPAKSKDSLPVLQRETSQDKPPTSLALPDATKSCTSANVLISSAKDPHILVSQVSDLSSTTSTASTGCVSEVEIIAEPCRVEQDSSDTVPATGLLKGQGLTALLSGLAKEKDPQKSSLSVQVDHPDFASENSKIVDSSVDLHPKQELLLMSSDDRDPGPHPPCIPDQEVVNGSLLTSRQADSPMSTSSGSSRSFSVASMLPETTREDVASSATTNTCDGCTFVEQTDIVALAARAIFEQENLEKGRAGTQADIREVTSKPSEASSIEGDQTFKTQTSKENGPGRTEATANEFNSQDSIEATVDRPLEKPSCSVGIKTSNTSLQVSASQPPSITSLSVNNLIHQSSISHPLVSCTGLSQTSEQTAVPVTVNLTVSSSSYGSQPPGPSLMTEYSQEQLNTLAGTISNPQIPEPLLKPSHESRKDSAKRAVQDDLLLSSAKRQKHCQPAPLRLEGLSLMSRTPDSISDQTQMMVGQIPPNSSNPVVSVSLSNPAHGDGLTRLFPPSNNFVAPALRQTEVQCSSQPSVAEQQQTQANQHLQALQQHVPAQGVPHLHSNHLYLKQQQQQQQQQQQQQQQQQQQQQQQQAGQLRERHHLYQLQHHVPHAESSVHSQPHNVHQQRTLQQEVQMQKKRNLVQGTQASQLSLQPKHHGTDQARPKSSQPHPHHQQMQQQMQQHFGSSQPEKSCENPSTSRNHHNHPQNHLNQDIMHPQQDVGSRQQGSGVSSEHVSGHNPMQRLLTSRGIEQQMVSQPSIVTRPSDMTCTPHRPERNRVSSYSAEALIGKTSSNSEQRMGISIQGSRVSDQLEMRSYLDVPRNKSLAIHNMQGRVDHSVASDIRLSDCQTFKPSGASQQPQSNFEVQSSRNNEIGNPVSSLRGMQSQAFRIGQNPGPPPIDRQKRLPYPPVQSIPTGNALPPRDSENTCHQSFMQSLLAPHVGDQVIGSQRSLSEHQRNTQCGPSSAIEYNCPPAHESVHIRRESESQNRESCDMSLGAINTRNSTLTIPFSSSSSSGDIQGRNTSPNVSVQKSNSMRITDSHGTKGHMNPPVTTNMHGVARPALPHPSVSHGNADQGPPVRQTNSSVPQRSRHPLQDSSGSKIRQPERTRSGNQRHSNVFDPSLPHLPLATSGSMILGRQQPPAEKRGSIVRFMPESPQVPNDNAAPDQHTLSQNFGFPFIPEGGMNPPINANTSFIPQVTQPSATRTPALIPVDPQNTLPSFYPPYSPAHPTLSNDISIPYFSNQMFSNPSTEKVNSGSLNNRFGSILSPPRPVGFAQPSFPLLPDMPPMHMTNSHLSNFNMTSLFPEIATALPDGSAMSPLLTIANSSASDSSKQSSNRPAHNISHILGHDCSSAV", "length": 2255, "header": "tr|F1SP92-1|F1SP92_PIG Isoform 1 of Upstream transcription factor family member 3 OS=Sus scrofa OX=9823 GN=USF3 PE=4 SV=2 CANONICAL=F1SP92-1" }, "isoforms": [ { "isoform_ac": "F1SP92-1", "url": "https://www.uniprot.org/uniprotkb/F1SP92/entry#F1SP92-1", "sequence": { "sequence": "MPEMTENETPTKKQHRKKDRETHNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQALKYITELKRQNDELLLNGGNNEQAEEIKKLRKQLEEIQKENGRYIELLKANDICLYDDPTIHWKGNLKNSKVSVVIPSDQVQKNIIVYSNGSQPGGNSQGTAVQGITFNVGHNLQKQTANVVPVQRTCNLVTPVSISGVYPSENKPWHQTTVSALAANQPVPLCLPATISAQNILELSTSESEPSVLVASSGSLIAVPVGPEPPQHRSLLTCLNDQNSSENKSGQESPKVLKKMVPCATSISSTCSAAATKGHHGSKSCLSIQDCRSEFQTIFVVSVTTTVCSQPPRSAGDSRPANTGKGADVTSVTAVVVPSAPGGGKTTTAVSTLSANPMDNGWTLSCSLPSSAVSASDLKNINSLTRISSAGNTQTTWTTLQLAGNTIQPLSQTPSSAVTPVLNESGTSPTTTNHSRHMATGINLNNSCPADGQPVEQVVVTLPSYPSLPMQPLIAQPQVKSQPPKNILPLNSAMQVIQMAQPVGSTVNAAPANQNVIILQPPSTTPCPAVMRAEVPNQTVGQQIVIIQAANQNPLPLLSAPPPGSVRLPVNGATAIIGSNSSVQNVSTPQTFGGKHLVHILPRSSSLSTSNSTPTFSVTMSNQQQPQTISLNGQFFALQPVMSSSGTTSQAPMQIIQPTTSEDPNTNVALNTFGALASLNQSISQMAGQSCVQLPVSQPGNPQTAANSQTTPASCVSLTTTVAPPLTTDSLVTQPSTYNLVTTPSMNTVACLPNGRSKRLNKKPGVKKHSAANKSACPLNAVGDAGKLDCPSTEGPAEPSCHDGLLDGLPVVLPSVTVSQVDSVSVSGSHSLDILNSESVMPESVPKSRSAEESGLPSQDSVTSEHFTMAPAKSKDSLPVLQRETSQDKPPTSLALPDATKSCTSANVLISSAKDPHILVSQVSDLSSTTSTASTGCVSEVEIIAEPCRVEQDSSDTVPATGLLKGQGLTALLSGLAKEKDPQKSSLSVQVDHPDFASENSKIVDSSVDLHPKQELLLMSSDDRDPGPHPPCIPDQEVVNGSLLTSRQADSPMSTSSGSSRSFSVASMLPETTREDVASSATTNTCDGCTFVEQTDIVALAARAIFEQENLEKGRAGTQADIREVTSKPSEASSIEGDQTFKTQTSKENGPGRTEATANEFNSQDSIEATVDRPLEKPSCSVGIKTSNTSLQVSASQPPSITSLSVNNLIHQSSISHPLVSCTGLSQTSEQTAVPVTVNLTVSSSSYGSQPPGPSLMTEYSQEQLNTLAGTISNPQIPEPLLKPSHESRKDSAKRAVQDDLLLSSAKRQKHCQPAPLRLEGLSLMSRTPDSISDQTQMMVGQIPPNSSNPVVSVSLSNPAHGDGLTRLFPPSNNFVAPALRQTEVQCSSQPSVAEQQQTQANQHLQALQQHVPAQGVPHLHSNHLYLKQQQQQQQQQQQQQQQQQQQQQQQQAGQLRERHHLYQLQHHVPHAESSVHSQPHNVHQQRTLQQEVQMQKKRNLVQGTQASQLSLQPKHHGTDQARPKSSQPHPHHQQMQQQMQQHFGSSQPEKSCENPSTSRNHHNHPQNHLNQDIMHPQQDVGSRQQGSGVSSEHVSGHNPMQRLLTSRGIEQQMVSQPSIVTRPSDMTCTPHRPERNRVSSYSAEALIGKTSSNSEQRMGISIQGSRVSDQLEMRSYLDVPRNKSLAIHNMQGRVDHSVASDIRLSDCQTFKPSGASQQPQSNFEVQSSRNNEIGNPVSSLRGMQSQAFRIGQNPGPPPIDRQKRLPYPPVQSIPTGNALPPRDSENTCHQSFMQSLLAPHVGDQVIGSQRSLSEHQRNTQCGPSSAIEYNCPPAHESVHIRRESESQNRESCDMSLGAINTRNSTLTIPFSSSSSSGDIQGRNTSPNVSVQKSNSMRITDSHGTKGHMNPPVTTNMHGVARPALPHPSVSHGNADQGPPVRQTNSSVPQRSRHPLQDSSGSKIRQPERTRSGNQRHSNVFDPSLPHLPLATSGSMILGRQQPPAEKRGSIVRFMPESPQVPNDNAAPDQHTLSQNFGFPFIPEGGMNPPINANTSFIPQVTQPSATRTPALIPVDPQNTLPSFYPPYSPAHPTLSNDISIPYFSNQMFSNPSTEKVNSGSLNNRFGSILSPPRPVGFAQPSFPLLPDMPPMHMTNSHLSNFNMTSLFPEIATALPDGSAMSPLLTIANSSASDSSKQSSNRPAHNISHILGHDCSSAV", "length": 2255, "header": "tr|F1SP92-1|F1SP92_PIG Isoform 1 of Upstream transcription factor family member 3 OS=Sus scrofa OX=9823 GN=USF3 PE=4 SV=2 CANONICAL=F1SP92-1" }, "locus": { "chromosome": "13", "start_pos": 146280367, "end_pos": 146257349, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013042.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013042.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012699.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012699.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP92", "url": "https://www.uniprot.org/uniprotkb/F1SP92" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1NA48-1", "protein_name": "Upstream transcription factor family member 3", "gene_name": "USF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPEMTENETPTKKQHRKKNRETHNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQAFKYITELKRQNDELLLNGGNNEQAEEIKKLRKQLEEIQKENGRYIELLKANDICLYDDPTIHWKGNLKNSKVSVVIPSDQVQKNIIVYSNGSQPGGNSQGTAVQGITFNVGHNLQKQTANVVPVQRTCNLVTPVSISGVYPSENKPWHQTTVSALAANQPVPLCLPAALSAQNILELSTSESESSVLGPTSSSLVAVPVGPEPPQHCSSHTCLNDQNSSENKKGQESPQVLKKTVPCATSISSSCSATATQGQPGSESCRSTQDHRSDLQTTLVVSVTTAVCSQPPRPAGDSCMASSSKGADSASVTMVVAPSVPGGGMITMPVSTLSANPMDSGWTLSCSLPSSAVSTADLKNMNSLTRISSAGNTQTTWTTLQLAGNTIQPLSQTPSSAVTPVLNESGTSPTTANHSRCVAPGISLNNSFPAEGQPVEQVVVTLPSCPPLPMQPLITQPQVKSQPPKSILPLNSAMQVIQMAQPVGSAVNAAPANQNVIILQPPSTTPCPTVMRAEVPNQTVGQQIVIIQAANQNTLPLLSAPPPGSVRLPVNGASAIIGSNNSVQNVSTPQTFGGKHLVHILPRPTSLSASNSTQTFSVTVSSQQQPQTISLNGQLFALQPVMSSSGTTNQTPMQIIQPTTSEDPNTNVALNTFGALASLNQSISQMAGQSCVQLSVSQPVHPQTAANSQITPANCVSLTTVAPPMTTDNSATLPSTYNLVTTPSVNTVACVPNTKAKRLNKKPGVKKHLATNKSACSLNAVRDVGKSDGPSTEGSAEPSCNDGLLESLPGVLPSAIVSQTNSVSVSGSHSLNVLNSESVMPESVPKSKSAEESSPPSQESVTSEQFTMAPAKSKDFLPISQRETSQDTPPSSLALPDAAKSCTSANVLISSADDAPVLVSQVSHLSSTTSTTSTDCVSEVGVIADPCRVQQASSDTVPTTGLLKGQGLTALLSGLAKEKDPQKSSLSVQVDHPDFSSENSKIVDSNVELHPKQELLLMSSDDRDPGQPHSCIPDQEVINGSLLTSRQADSPMSTSSGSSRSFSVASMLPETAREDVTSNAATNTCDSCTFVEQTDIVALAARAIFDQENLEKGRAGTQVPADIREVPSKPSEASSLEGDQPFKTQISKESGPGQAEATPNEFNSQDSIEATVDRPLEKPSCSVGMKTSNASLQVSTSQPPSITSLSVNNLIHQSTLSHPLVSCTGLSQTSEQTAVPTTVNLTVSSGSYGNQPPGPSLMTEYSQEHLNTMAGTVPNTPIQEPLLKPSHESRKDSTKRAVQDDLLLSSAKRQKHCQPAALRLEGLSLMSRTPDSISDQTQMMVGQIPPNSSNSVVPISNPAHGDGLTRLFPPSNNFVVPALRQTEVQCGSQASIAEQQPAQAGQHLQALQQHVPAQGVPHLHSNHVYLKQQQQAGQLRERHHLYQLQRHVPHAESSVHSQAHSVHQQRTLQQEVQMQKKRNLVQGTQASQLSLQPKHHGTDQSRPKSGQPHPHHQQMQQQMQQHFGSSQAEKSCENPSTSRNHQNHLSQDILHQQEVGSRQQAPGVSSEHVSGHNPMQRLLTSRGIEQQMASQSSIVTRPSDMTCAPHRPERNRVSSYSAEALIGKTSSNSEQRMGISIQGSRVSDQLEMRSYLDVPRNKSLAIHNMQGRVDHTASDIRLSDCQTFKPSGASQQPQNNFEVQSSRNNEIGNPVSSLRSMQPQAFRISQNPGPPPVDRQKRLPYPPVQSIPTGNAIPTRDNENTCHQSFMQSLLAPHLGDQVIGSQRSLSEHQRNTQCGPSSAVEYNCPPSHESVHIRRDSESQSRESCDMSLGAINTRNSTLNIPFSSSSSSGDIQGRNTSPNVSVQKSNPMRITDSHGTKGHMNPPVTTNMHGVARPALPHPSASHGNADQGPPVRQTSSSVPQRSRHPLPDSGGSKIRPPERTRSGNPRHSNVFDPSLPHLPLSTGGSMILGRQQPAAEKRGSIVRFMPDSPQVPNDNSVPDQHTLSQNFGFPFIPEGGMNPPINANASFIPQVTQPSATRTPALIPVDPQNTLPSFYPPYSPAHPTLSNDISIPYFPNQMFSNPSTEKVNSGSLNNRFGSILSPPRPVGFAQPSFPLLPDMPPMHMTNSHLSNFNMTSLFPEIATALPDGSAMSPLLTIANSSASDSSKQSSNRPAHNISHILGHDCSSAV", "length": 2228 }, "evidence": [ { "id": "F1SP92", "url": "https://omabrowser.org/oma/group/F1SP92/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0ZNS6-1", "protein_name": "Upstream transcription factor family member 3", "gene_name": "USF3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVPAVGAPPPSPPSPPVLFSETMPEMTENDTPTKKQYRKKNRETHNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQAFKYITEMKRQNDELLLNGGNNEQAEEIKKLRKQLDELQKENGRYIELLKANDICLYDDPTIHWKGNLKNAKVSVVIPSDQVQKNIIVYSNGSQPNGNNQGASVQGITFNVGHNLQKQTANVVPVQRTCNLVTPVTISGIYPAENKPRSQSTVSPLAPTQVVPAGNTLELSIPENEQGVLATATASSQNASQSRTEQGLQCSSDNALQNGQSLPKSKNDEGGSKSAKKTVVQGISLPSSASMEAEKVQHMNATSSKTPNSRNEFQESSVISTTGTAVVPSVRLSTADSFSSVNVLKSTNLISSADMPTTSAAEGMKAVTVISTLPASPLENCWSFSGSTGVVPSDLKNMSSLTRMPSAGNTQTTWTTLQLAGNTVQPLSQTPSSIMTALLSEPVNGASTVSPAHSRPLTTSISLNTSLPTDGQAAEQIVVTLPSCPSLPMQPLISQPQVKTQAAGSILPLNSTMQVIQMAQPVASAVTGAPANQNVIILQPPNTAPCPPIVRAEVPSQNVSQQIVIIQAASQNPLPLLSAQPSASVRVPVNGPVAVANSSNSVQNAHLPQTFGGKHLVHILPRPSSLPSSSSTQTFSVTMSNQQHPQTISLNGQLFALQPVMSSSGASNQAPMQIIQPTTSEDPNTNVALNTFGALANLNQSISQMAGQSCLHLSLSHPTNPTTVHNQITTVNCVSLPASVPPSVPVEGSVLTSASNSTSVSPKKAAAGFLSNTKSKRTNKKQSTKKHLAANIKVSCPAIPCKDAGKADSVPVEAVAKHSKGEGLPENIPAASQALATLQVSGASISPSKEAECSEQAVGSCPVPETTLAELPTPSPLQLAVSERLALVPPTARDAAPLLPVRQSQSNPLTSTASSESSSRCEPPGTLTSSQTEAHGTSPQVSGASAVESSTAGQTSTAGTTSESCSVPQGSSVVMQDVDLLEGQGLTKMLSDLTKERTVVEKSSSFAVQGEHSNFPMESSKSVESNVDLPEKQELLLMNTEGDALSQHHTCVSDQEVVSAALIASRQADSPMSTSSGSSRGFSVASMLPDTTREDVTSNTSTSTCNNCTFSEQPDIVALAARAIFDQESLEKSGGGIQVNMRDAISKSTEVATLEREQQTFKPLPVKESNAGPLETASNKFSAQDTVQTNVDRQVEKPSCSVGGVETSNSSLQISASQSPSITSLSVNNLIHQSRIVHPLVSCSSLSQPSEPASIPATVGLSLPSSSYVNPSPRPAMMSEYAQEQLNAIRANSMQAPQLQESHLKQQNHEGRKDSAKRAVQDDLLLSTAKRQKQCQTAPLRLEGMALMNRTPEGIADQTQMLVGQMPSNSSNSVSSLSSQGHTDGLNRLFPSNSNFVTPALRQTEVQCSSQPPISEQQGTAGQHLQPIQHVPGQGISHLHNNHPYLKQQQAGQLRERHHLYQLQHHVTHGENSVHSQPHGVHQQRTIQQEVQMQKKRNLIQGTQAPQLSLQQKHHGSDQTRQKGGQPHPHHQQMQQQMQQHFGASQPEKNCENPATSRNHHNHPQSHINQDIMHQQQQDVSSRQQGSASEHVSGHNPMQRLMTSRGLEPQMVSQASIVTRPSDMTCTPHRQERNRVSSYSAEALIGKTPSNSEQRIGISLQGPRVSDQLEMRSYIDASRNKGLVIHNMQGRISIDHTVGSDVQRLSDCQTFKPAGPNQQPAGNFDVQASRNSEIGNSVSSLRGMQSQAFRIGQNTGPPIERQKRLPYQPVQGIPTGNSLPSRENENTCHQSFMQSLLAPNLGDQVSGSQRSIPEHPRNTQCGASSTIEYSCPPARESVHIRRDGDGQNRESCDMSISTINTRNSSLTIPFSTSSSSGDIQGRNTSPNISVQKSNPMRMTDSHGTKSHMNTPVSSNMHGVVRPTHPHPAVSHGNGEQGQPSVRQPNSSVTQRSRHPLQDNNSSKIRQPERNRSGNQRHGNVFDPSLPHLPLSTSSSMILGRQQSAIEKRGSIVRFMSDGPQVSNDNAASDQHTLSQNFGFPFIPEGGMNPPINANTSFIPPVTQPSATRTPALIPVDPQNTLPSFYPPYSPAHPTLSNDISIPYFPNQMFPNPSTEKPSSGGLNNRFGSILSPPRPVGFAQPSFPLLPDMPPMHMTNTSHLSNFNLTSLFPEIATALPPDGSAMSPLLSIANTSASDSSKQPSNRPAHNISHILGHDCSSAV", "length": 2255 }, "evidence": [ { "id": "F1SP92", "url": "https://omabrowser.org/oma/group/F1SP92/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4ABR5-1", "protein_name": "Upstream transcription factor family member 3", "gene_name": "Usf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEMTEHETPTKKQHRKKNRETHNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQAFKYITELKRQNDELLLNGGSSEQAEEIKKLRKQLEEIQKENGRYIELLKANDICLYDDPTIHWKGNLKTSKVSVVIPSDQVQKNIIVYSNGSQPGGNSQGTAVQGITFNVGHGLQKQTANVVPVQRTCKLVTPVSISGIYPSENKPWHQTTVSALAANQSVPLCLPTAISAQNILELSTSESQSSALGATGGSVVTTSVGPDPHQHRSLNTCLNDQNASENSNVQESPKSSKKTVSSVSGTSSSNSAAAPGVHHETKSSLATQGSSADSQNTLVSITTPVSSQPPRSTGSSSPVSVSKTVDPTNTAAAVVPAHTAVSKSALPVSSLSATPLEGGWTLSCSLPSSSVSASELKNINSLTRISSAGNTQTTWTTLHLAGNTIQPLSQPPSSASTPALNECGTSPTPSNHKHMATGITFNNSPPTDGQPVEQIVVTLPSCPPLPMQPLIAQPQVKSQPPKNILPLNSAMQVIQMAQPVGSGVTAAPANQNVIILQPPSTTPCPAMMRAEVSNQAVGQQIVIIQAANQNPLPLLSAPHPGPVRLPVNGASAIIGSHNSVQNVPAPQTFGGKHLVHILPRPSSLSTSNSAQTFSVTMSNQQQPQTISLNGQLFALQPVMSSSGTTNQSPMQIIQPTTSEDPNTNVALNTFGALASLNQSISQMAGQSCVQLSISQSANPQTSANSQTSPTNCVSLTTVAPTMTAENSATQSTTYSLATASSTNTVTCLPSTMKSKRLSKKPSAKKHLAANKPACPLNSVRDVGKMDGPGMDSSAEPSCSDGLLNGLPVGLSSVTVSQAKSVSISASHSLDILNSESVIPESDSKSKSAEDCSSSSRESEANEQLALATAKSKDSTPILQESSQGTPPCSVALPNATKSCASANVLTPSPTESESLVSQVSGMPSTTSTSNTVCISEVEIVAEPCPVQQESLDTMQAAGPLKGQGLTMLLSDLAKEKDLQRTSLPVQMDHPDFSPESSKIGDPNVDLHPKQELLLTSDDRDLPQPHSCLPDQEVIHGSLLTSRQADSPMSTSSGSSRSFSVASMLPETAREDVTSSTTNTCDSCTFAEQTDIVALAARAILDQESIEKGRLGTQADLKDVTPKPSETSLEGDQPFKPQIHKETCTGQADPTPNEFNSQDSVEVTVDRPLEKPSCSLGIKASNPPLQVSASQPPSLTHQNSISRPLVSCAGLSQSSDQTAIPVTVNMTVASSAYGSQPPVPPLMTEYSQEQLNSMANSIPNPQVQEPLSKPSHESRKDSAKRTVQDDLLLSSAKRQKHCQPAPLRLESVPLMSRTPDNIPDQTQMMASQITPNSSNSVVPVSNPAHGDGLTRLFPAGNNFAAPVLRQADVQCNPQPSVAEQPQQTQAGQHLQALQQHVPPQGVSHLHTNHLYLKQQQQQQQAGQLRERHHLYQLQHHVPHADNAVHSQPHIVHQQRTLQQEVQMQKKRNLVQGTPTSQLSLQPKHHGTDQSRPKSSQPHPHHQQMQQQLQQHFASSQPEKSCENPSSSRGHHSHPQNHLNQDVLHQQQDVGSRQQGSAVSSDHVSGHNPMQRLLPSRGLEQQMVSQPSIVTRSSDMTCAPHRPERNRVSSYSAEALIGKSSSTSEQRLGISIQGSRVSDQLEMRSYLDVPRNKSLALHNMQGRMDHTVTSDIRLSDCQTFKPGAASQQPQSNFEVQSSRNNEIGNPAPSLRGMQSQAFRISQNTGPPPIDRQKRLSYPPVQSIPTGNAVPPRDSENTCHQSFMQSLLAPHLGDQVIGSQRSLSEHPRNTQCGPSSTIEYNCPPARESVHIRRESESQNRESCDMSLGAINPRNSTLNIPFSSSSSSGDIQGRNTSPNVSVQKSNPMRITDSHGAKGHMNPPVTSNMHGVARPTLPHPSVSHGNADQGPPVRQANSSVAQRSRHPLQDSSGSKIRQPERNRSGNQRHSNVFDPSLPHLPLSTSGSMILGRQQPAAEKRGSIVRFMPDSPQVPNDNSGPDQHSLSQNFGFPFIPEGGMNPPINANTSFIPQVTQPSATRAPALIPVDPQNTLPSFYPPYSPAHPTLSNDISIPYFSNQMFSNPSTEKVNSGSLNNRFGSILSPPRPVGFAQPSFPLLPEMPPMHMANSHLSNFNMTSLFPEIAALPDGSAMSPLLTIANSSASDSSKQSSNRPAHNISHILGHDCSSAV", "length": 2222 }, "evidence": [ { "id": "F1SP92", "url": "https://omabrowser.org/oma/group/F1SP92/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7F011-1", "protein_name": "Basic helix-loop-helix domain-containing protein USF3", "gene_name": "usf3", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPEIVQNQTKNLKPPRRKKNKEIHNAVERHRKEKINAGINRIGELLPCSQALKQSKNMILAEAFRYITELKRQNDEMLLNGGDKVQAEEINRLRNQVEELRKESAHYIELLKTNDINFLDDPTIHWKGKQRCAKVAKVTPTHMISKGIIVYSNGNNSCPTSKVSIPPSPVSNLDKQPSNAVTVQPSCDISLGTGQTFGITNGAPVNNIVVTTASSHIPVATLIPAASKPCLTVVEQYSPLAPTTPRLNPPMNYITLQGLCPQPAVSTPLLPQLQPDNPTPSLTSATCPAAPLRLQHMLNLSSLPQVVMSNSVVPVAATNTTLSQNCEIQSVSTILPATATLLGTSATSSTKTTWTTLQLAGNTVQPVSQALVPDGANISHNPQQLSVCSLGTKPHEEPVSIHLQQQNPMQLQAPAPNCIAVQPSGPKPQIYSAVVPCPQAAVAQQSSILSVPAIVSQALVVHQPSVETQKAHLTHPQSCVRAQPALLPKPQLSSTLMTACNPTIQPKTPIQPAVPCQPHSQPTVLPQTPSAIVPQLHLSLMPQAQPVINPPTQPALVPKPQAATLPVLQTMQLLQVNSEETPVAVTTSPPSNSHVVILQQGSSCPTPQVIREDVTNQTPCQHIVIIQAPTLTPAPHHSHHTAIVSNATPALTSQASTSNPICTASMQAAGTKQLVHILPRPSTQLQAQAPHTITVNGQVYVLQPAKSPEKGNSLSSQSVAPVLKPTCEEPTSNVAMNCLGALTSLSQSIAKVSSQSNVQIYTIPPPSYTTVQPLLTCGSEVSTPTETVLSASVPASSSAAAGRAVKTQPQKSCGTSGNQTKQNIVRKTKLVKRKELKPGRGLRRTAVKSKALVANNLCTELSTVVTSVNSENSLNKNMVSHDANLLSSSTPSSVISTCSSSVVTSVSSSSETSTVNSVTSSLNVSIVKPSLAVGEGLKTKAKSTEVVHLHDNANVSSVNSICSTQGDVVVSTIGGSLSKGISNTGNTPQLNCSAISSTIYAQSSSVETVGTLSVASSEIHVNSSCSVTNFSETTSQNKVTNINSVCTSSERRLTESIPSFTESSTLVTNENSAQDNSKIKSLSSDLCKPPVSSDISSPSQSTSISANSVDIRPVVSIMPSKTISQTQEKYSRRDNLTETPQIQASFDATSTPDSDTSLSTQPVPLSETSRISDPLKSLKRPSSMNMPMSTTNQGNCTDIKVPESNMNTQPCKGGQSDDATEKVVTEMAAYGQKETVPPQQVCTLENDSFEPPLGTSRQTDSPLAGGSGGRGFSVASLLPAGHNISASSSTFGAFTFTSEQAEILAMAARAIFEQDSPSKRAAGCSVDIPSTAATGWDLPKIQPTLNKDNVSDQQVKLTDQADLPMSKNSSQVSAQVPPIEPLASSTTGIRLPQSIAYSQSQPSTVTSLNVNNLIRPSSNQLYPGSPNVAQQVSTSSSGGAAIMVSQSSSHIPPTCSGPSQPNEYAPLKNVLMRTNIGVGMVERHQKDMPKRSAQDDLILPNKRSKSCTAGNVARVDIKTTDHVQMMVGQMPSSTSAVMPRNHSDGVGALFSGNTFMSTVLRPTERHCLTQVSSHEQNQPSVVHLQQGHAQHNSQQSGQNLGGNPYLKHQQQQEQRHLYQLQHHLTQPESQIHSIHQRNLLQDQHGQKKRGVVRSGQTGPNVALQKQHHLEKSGVQQQHQQQQQQHQQQQQQSQQHQQQQHHQQQQSQQQQQKAQQIQQQQQSLQQQQQQQQQQMPPQSSHSRHQHIQQQIQQQHFGARQDKNCEAQQAGQRAHQNNHLVQQERPPGQDHGTMQRLMGSRSMEQQLTSQASNSVSRSSDLACTSSRQERHRLSSYSAEALIGKTPVTGEQRMGVHLQAPRNNTQDQSELRGYVDSSRGKGNIAHNSQSRLPPDHTNTTDTQRIPDCGPFKALVSSHQLSNFEVQVSRSGDMSSKSVPQIQRGPQPQAGFRMGAAPTGDGRSRGTYSGPHPVPQGVHLGPGLTREQEGCHQSFMQSLLAPHIPEQNVHQRAVQGCTPVSIEYSCVSGASVGDLQAKSSSPNLHAAQKSAPIRLGDNSKGHISQVSTNLHGPPLRTGPPHPSTPHSSSDTGRTQGSTRSLSVSQRPHHIGPDPQSTKIRPGDRPRSGNLRPGNPFEPESPLPLPSSGGVILGRTQTGSETRRSSIVRFMADGAQVSSDNNLVSDRCAVSDLTQNFGFPFIAEGGMNPPPPINANTSFIPPVTQPSASRTPALLPVEPQNTLPSFYPSYSPAAHPSLPSEIPLQYFSNQMFTSPSTDKSGSAPLNNRFGSILSPPRPVGFAQASFPLLTDITPMPIANSSGITPHLSNFNLTSLFPEIATAMPPDGSSMPMSPLLSLANTTSSDSNKQSNRPAHNISHILGHDGTSAV", "length": 2384 }, "evidence": [ { "id": "F1SP92", "url": "https://omabrowser.org/oma/group/F1SP92/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q68DE3-1", "protein_name": "Basic helix-loop-helix domain-containing protein USF3", "gene_name": "USF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPEMTENETPTKKQHRKKNRETHNAVERHRKKKINAGINRIGELIPCSPALKQSKNMILDQAFKYITELKRQNDELLLNGGNNEQAEEIKKLRKQLEEIQKENGRYIELLKANDICLYDDPTIHWKGNLKNSKVSVVIPSDQVQKKIIVYSNGNQPGGNSQGTAVQGITFNVSHNLQKQTANVVPVQRTCNLVTPVSISGVYPSENKPWHQTTVPALATNQPVPLCLPAAISAQSILELPTSESESNVLGATSGSLIAVSIESEPHQHHSLHTCLNDQNSSENKNGQENPKVLKKMTPCVTNIPHSSSATATKVHHGNKSCLSIQDFRGDFQNTFVVSVTTTVCSQPPRTAGDSSPMSISKSADLTSTATVVASSAPGVGKATIPISTLSGNPLDNGWTLSCSLPSSSVSTSDLKNINSLTRISSAGNTQTTWTTLQLAGNTIQPLSQTPSSAVTPVLNESGTSPTTSNHSRYVATDINLNNSFPADGQPVEQVVVTLPSCPSLPMQPLIAQPQVKSQPPKNILPLNSAMQVIQMAQPVGSAVNSAPTNQNVIILQPPSTTPCPTVMRAEVSNQTVGQQIVIIQAANQNPLPLLPAPPPGSVRLPINGANTVIGSNNSVQNVPTPQTFGGKHLVHILPRPSSLSASNSTQTFSVTMSNQQPQTISLNGQLFALQPVMSSSGTTNQTPMQIIQPTTSEDPNTNVALNTFGALASLNQSISQMAGQSCVQLSISQPANSQTAANSQTTTANCVSLTTTAAPPVTTDSSATLASTYNLVSTSSMNTVACLPNMKSKRLNKKPGGRKHLAANKSACPLNSVRDVSKLDCPNTEGSAEPPCNDGLLESFPAVLPSVSVSQANSVSVSASHSLGVLSSESLIPESVSKSKSAEKSSPPSQESVTSEHFAMAAAKSKDSTPNLQQETSQDKPPSSLALSDAAKPCASANVLIPSPSDPHILVSQVPGLSSTTSTTSTDCVSEVEIIAEPCRVEQDSSDTMQTTGLLKGQGLTTLLSDLAKKKNPQKSSLSDQMDHPDFSSENPKIVDSSVNLHPKQELLLMNNDDRDPPQHHSCLPDQEVINGSLINGRQADSPMSTSSGSSRSFSVASMLPETTREDVTSNATTNTCDSCTFVEQTDIVALAARAIFDQENLEKGRVGLQADIREVASKPSEASLLEGDPPFKSQIPKESGTGQAEATPNEFNSQGSIEATMERPLEKPSCSLGIKTSNASLQDSTSQPPSITSLSVNNLIHQSSISHPLASCAGLSPTSEQTTVPATVNLTVSSSSYGSQPPGPSLMTEYSQEQLNTMTSTIPNSQIQEPLLKPSHESRKDSAKRAVQDDLLLSSAKRQKHCQPAPLRLESMSLMSRTPDTISDQTQMMVSQIPPNSSNSVVPVSNPAHGDGLTRLFPPSNNFVTPALRQTEVQCGSQPSVAEQQQTQASQHLQALQQHVPAQGVSHLHSNHLYIKQQQQQQQQQQQQQQQQQAGQLRERHHLYQMQHHVPHAESSVHSQPHNVHQQRTLQQEVQMQKKRNLVQGTQTSQLSLQPKHHGTDQSRSKTGQPHPHHQQMQQQMQQHFGSSQTEKSCENPSTSRNHHNHPQNHLNQDIMHQQQDVGSRQQGSGVSSEHVSGHNPMQRLLTSRGLEQQMVSQPSIVTRSSDMTCTPHRPERNRVSSYSAEALIGKTSSNSEQRMGISIQGSRVSDQLEMRSYLDVPRNKSLAIHNMQGRVDHTVASDIRLSDCQTFKPSGASQQPQSNFEVQSSRNNEIGNPVSSLRSMQSQAFRISQNTGPPPIDRQKRLSYPPVQSIPTGNGIPSRDSENTCHQSFMQSLLAPHLSDQVIGSQRSLSEHQRNTQCGPSSAIEYNCPPTHENVHIRRESESQNRESCDMSLGAINTRNSTLNIPFSSSSSSGDIQGRNTSPNVSVQKSNPMRITESHATKGHMNPPVTTNMHGVARPALPHPSVSHGNGDQGPAVRQANSSVPQRSRHPLQDSSGSKIRQPERNRSGNQRQSTVFDPSLPHLPLSTGGSMILGRQQPATEKRGSIVRFMPDSPQVPNDNSGPDQHTLSQNFGFSFIPEGGMNPPINANASFIPQVTQPSATRTPALIPVDPQNTLPSFYPPYSPAHPTLSNDISIPYFPNQMFSNPSTEKVNSGSLNNRFGSILSPPRPVGFAQPSFPLLPDMPPMHMTNSHLSNFNMTSLFPEIATALPDGSAMSPLLTIANSSASDSSKQSSNRPAHNISHILGHDCSSAV", "length": 2245 }, "evidence": [ { "id": "F1SP92", "url": "https://omabrowser.org/oma/group/F1SP92/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SP92", "url": "https://www.uniprot.org/uniprotkb/F1SP92" } ], "pmid": "" }, { "name": "negative regulation of epithelial to mesenchymal transition", "id": "GO:0010719", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010719", "evidence": [ { "database": "UniProtKB", "id": "F1SP92", "url": "https://www.uniprot.org/uniprotkb/F1SP92" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SP92", "url": "https://www.uniprot.org/uniprotkb/F1SP92" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SP92", "url": "https://www.uniprot.org/uniprotkb/F1SP92" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SP92", "url": "https://www.uniprot.org/uniprotkb/F1SP92" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1076, "end_pos": 1078, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1224, "end_pos": 1226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1275, "end_pos": 1277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1382, "end_pos": 1384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1719, "end_pos": 1721, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1900, "end_pos": 1902, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1920, "end_pos": 1922, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1924, "end_pos": 1926, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1981, "end_pos": 1983, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2090, "end_pos": 2092, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2199, "end_pos": 2201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2225, "end_pos": 2227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2242, "end_pos": 2244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" }, { "start_pos": 459, "end_pos": 461, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 573, "end_pos": 575, "annotation": "n_glycosylation_sequon" }, { "start_pos": 616, "end_pos": 618, "annotation": "n_glycosylation_sequon" }, { "start_pos": 621, "end_pos": 623, "annotation": "n_glycosylation_sequon" }, { "start_pos": 647, "end_pos": 649, "annotation": "n_glycosylation_sequon" }, { "start_pos": 716, "end_pos": 718, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" }, { "start_pos": 809, "end_pos": 811, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP92" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 69, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1076, "end_pos": 1078 }, { "start_pos": 1224, "end_pos": 1226 }, { "start_pos": 1275, "end_pos": 1277 }, { "start_pos": 1382, "end_pos": 1384 }, { "start_pos": 152, "end_pos": 154 }, { "start_pos": 1719, "end_pos": 1721 }, { "start_pos": 1900, "end_pos": 1902 }, { "start_pos": 1920, "end_pos": 1922 }, { "start_pos": 1924, "end_pos": 1926 }, { "start_pos": 1981, "end_pos": 1983 }, { "start_pos": 2090, "end_pos": 2092 }, { "start_pos": 2199, "end_pos": 2201 }, { "start_pos": 2225, "end_pos": 2227 }, { "start_pos": 2242, "end_pos": 2244 }, { "start_pos": 279, "end_pos": 281 }, { "start_pos": 283, "end_pos": 285 }, { "start_pos": 459, "end_pos": 461 }, { "start_pos": 469, "end_pos": 471 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 573, "end_pos": 575 }, { "start_pos": 616, "end_pos": 618 }, { "start_pos": 621, "end_pos": 623 }, { "start_pos": 647, "end_pos": 649 }, { "start_pos": 716, "end_pos": 718 }, { "start_pos": 7, "end_pos": 9 }, { "start_pos": 809, "end_pos": 811 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SP95-1", "uniprot_ac": "F1SP95", "uniprot_id": "F1SP95_PIG", "mass": { "chemical_mass": 76623.0, "monoisotopic_mass": 76623.0 }, "refseq": { "ac": "XP_003132713", "name": "GRAM domain-containing protein 1C isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132713" }, "gene_names": [ { "name": "GRAMD1C", "type": "recommended", "evidence": [ { "id": "F1SP95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ] }, { "name": "GRAMD1C", "type": "synonym", "evidence": [ { "id": "XP_003132713", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132713" } ] } ], "protein_names": [ { "name": "GRAM domain containing 1C", "type": "synonym", "evidence": [ { "id": "F1SP95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP95/entry#names_and_taxonomy" } ] }, { "name": "GRAM domain-containing protein 1C isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003132713", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132713" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GRAMD1C", "url": "https://www.uniprot.org/uniprotkb/F1SP95", "locus": { "chromosome": "13", "start_pos": 145997742, "end_pos": 146105681, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011915", "url": "https://www.ensembl.org/id/ENSSSCG00000011915" } ] } } ], "crossref": [ { "id": "F1SP95", "url": "https://alphafold.ebi.ac.uk/entry/F1SP95", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011915", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011915", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13220", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13220", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513240", "url": "https://www.ncbi.nlm.nih.gov/gene/100513240", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004182", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004182", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031968", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031968", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051482", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051482", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513240", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513240", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SP95", "url": "https://www.orthodb.org/?gene=F1SP95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23319", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23319", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23319:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23319:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02893", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02893", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132713", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132713", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SP95-1", "url": "https://www.uniprot.org/uniprotkb/F1SP95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGALTGRQVIREEDASFAAELQEKLEENPSPVVDENNTVSPKKQAPNLHNWSGDWNFWISSSTYKDRNEEYKKQFTHLPDTEKLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWETTISIALKNITFMTKEKTARLIPNAIQIVTEGEKFFFTSFGARDRSYLSIFRLWQNVLLDKSLTRQEFWQLLQQNYGTELGLTAEEMENLSLSIEDNEQPRSPGRSSFDNCGEGDEILSKSISFTHESISRVSETEQIDGNPPSGGLGKEEPQSEKQIKSPSLTSEKRLSRMPSKSLDLNKNEYLSLDKSSTSDSVDEENIPEKDLRGRLYINRVFHISAERMFELLFTSSRFMQRFANSRNIIDIVSTPWNVEPGGDQLRTMTYTIVLNNPLTGKCTTATERQRLYKESREAQFYLVDSEVLTHDVPYHDYFYTLNRYHIVRSAKQKCQLRVSTDLKYKKQPWAIVKSLIEKNSWSSLADYFKQLESDLLMEESMINQSIEDPGKLSGLRRRRRTFNRTAETAPKLSSQCSSGEMRFHAKGDITGKKKEIENYHTLLIVVMSIFLLLLVLLNVTLFLKLSKIEYAAQSFYRLNLQEENSLNLASDMVSRAENIQKSKDQAHRLKGVLQDSIMMLEQLKNSLIMLQRTFDLLNKNKTNMAVES", "length": 663, "header": "tr|F1SP95-1|F1SP95_PIG Isoform 1 of GRAM domain containing 1C OS=Sus scrofa OX=9823 GN=GRAMD1C PE=4 SV=4 CANONICAL=F1SP95-1" }, "isoforms": [ { "isoform_ac": "F1SP95-1", "url": "https://www.uniprot.org/uniprotkb/F1SP95/entry#F1SP95-1", "sequence": { "sequence": "MEGALTGRQVIREEDASFAAELQEKLEENPSPVVDENNTVSPKKQAPNLHNWSGDWNFWISSSTYKDRNEEYKKQFTHLPDTEKLIADYACALQRDILLQGRLYLSENWLCFYSNIFRWETTISIALKNITFMTKEKTARLIPNAIQIVTEGEKFFFTSFGARDRSYLSIFRLWQNVLLDKSLTRQEFWQLLQQNYGTELGLTAEEMENLSLSIEDNEQPRSPGRSSFDNCGEGDEILSKSISFTHESISRVSETEQIDGNPPSGGLGKEEPQSEKQIKSPSLTSEKRLSRMPSKSLDLNKNEYLSLDKSSTSDSVDEENIPEKDLRGRLYINRVFHISAERMFELLFTSSRFMQRFANSRNIIDIVSTPWNVEPGGDQLRTMTYTIVLNNPLTGKCTTATERQRLYKESREAQFYLVDSEVLTHDVPYHDYFYTLNRYHIVRSAKQKCQLRVSTDLKYKKQPWAIVKSLIEKNSWSSLADYFKQLESDLLMEESMINQSIEDPGKLSGLRRRRRTFNRTAETAPKLSSQCSSGEMRFHAKGDITGKKKEIENYHTLLIVVMSIFLLLLVLLNVTLFLKLSKIEYAAQSFYRLNLQEENSLNLASDMVSRAENIQKSKDQAHRLKGVLQDSIMMLEQLKNSLIMLQRTFDLLNKNKTNMAVES", "length": 663, "header": "tr|F1SP95-1|F1SP95_PIG Isoform 1 of GRAM domain containing 1C OS=Sus scrofa OX=9823 GN=GRAMD1C PE=4 SV=4 CANONICAL=F1SP95-1" }, "locus": { "chromosome": "13", "start_pos": 146105672, "end_pos": 145999314, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013038.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013038.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012695.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012695.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513240", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513240", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular sterol transport", "id": "GO:0032366", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032366", "evidence": [ { "database": "UniProtKB", "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ], "pmid": "" }, { "name": "cellular response to cholesterol", "id": "GO:0071397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071397", "evidence": [ { "database": "UniProtKB", "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ], "pmid": "" }, { "name": "endoplasmic reticulum-plasma membrane contact site", "id": "GO:0140268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140268", "evidence": [ { "database": "UniProtKB", "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cholesterol binding", "id": "GO:0015485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015485", "evidence": [ { "database": "UniProtKB", "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ], "pmid": "" }, { "name": "cholesterol transfer activity", "id": "GO:0120020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120020", "evidence": [ { "database": "UniProtKB", "id": "F1SP95", "url": "https://www.uniprot.org/uniprotkb/F1SP95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 129, "end_pos": 131, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 498, "end_pos": 500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 573, "end_pos": 575, "annotation": "n_glycosylation_sequon" }, { "start_pos": 655, "end_pos": 657, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SP95-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 663, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SP95-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SP95" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SP95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SP95" }, { "id": "PS51778", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51778" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VASt", "eco_id": "ECO_0000259", "start_pos": 327, "end_pos": 498, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 129, "end_pos": 131 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 498, "end_pos": 500 }, { "start_pos": 518, "end_pos": 520 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 573, "end_pos": 575 }, { "start_pos": 655, "end_pos": 657 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPB4-1", "uniprot_ac": "F1SPB4", "uniprot_id": "F1SPB4_PIG", "mass": { "chemical_mass": 41390.0, "monoisotopic_mass": 41390.0 }, "refseq": {}, "gene_names": [ { "name": "POPDC2", "type": "recommended", "evidence": [ { "id": "F1SPB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" } ] } ], "protein_names": [ { "name": "Popeye domain containing 2", "type": "synonym", "evidence": [ { "id": "F1SPB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPB4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPB4", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POPDC2", "url": "https://www.uniprot.org/uniprotkb/F1SPB4", "locus": { "chromosome": "13", "start_pos": 140620789, "end_pos": 140601515, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011894", "url": "https://www.ensembl.org/id/ENSSSCG00000011894" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011894", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011894", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR006916", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018490", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018490", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FLCLTLW", "url": "https://omabrowser.org/oma/group/FLCLTLW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12101", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12101", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12101:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12101:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04831", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04831", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SPB4", "url": "https://www.uniprot.org/uniprotkb/F1SPB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPB4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSNSSAVGQLLWRGLPCVGWRQDLQGAVYHLANCFLLLGFMGGSGMYGCFYLFGFLGTGYLCCVLWGWFDACGLDIVLWSVLLAMACVLQLAHLVYRLREDSLPEEFELLYKTLCLPLQVPLHAYKEMVRCCQEQVSTLATEQTYAVEGETPIDRLSLLLSGRVRVSQDGQFLHYIFPYQFMDSPEWESLHPSEEGVFQVTLTAETECSYISWPRKSLHLLLAKERYISRLFSILLGYDISEKLYALNDKLFAKFGLRFDIRLPSLYHVLGPAASDTRPESEKDEEDVCEPAMSSPQALSTSVQQTPPVSPHPAATNPPAPSPWVRMSRPDSGILGEDSTSLVLEDFEEVSGSESFMDYKSDGEYMR", "length": 368, "header": "tr|F1SPB4-1|F1SPB4_PIG Isoform 1 of Popeye domain containing 2 OS=Sus scrofa OX=9823 GN=POPDC2 PE=3 SV=1 CANONICAL=F1SPB4-1" }, "isoforms": [ { "isoform_ac": "F1SPB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPB4/entry#F1SPB4-1", "sequence": { "sequence": "MSSNSSAVGQLLWRGLPCVGWRQDLQGAVYHLANCFLLLGFMGGSGMYGCFYLFGFLGTGYLCCVLWGWFDACGLDIVLWSVLLAMACVLQLAHLVYRLREDSLPEEFELLYKTLCLPLQVPLHAYKEMVRCCQEQVSTLATEQTYAVEGETPIDRLSLLLSGRVRVSQDGQFLHYIFPYQFMDSPEWESLHPSEEGVFQVTLTAETECSYISWPRKSLHLLLAKERYISRLFSILLGYDISEKLYALNDKLFAKFGLRFDIRLPSLYHVLGPAASDTRPESEKDEEDVCEPAMSSPQALSTSVQQTPPVSPHPAATNPPAPSPWVRMSRPDSGILGEDSTSLVLEDFEEVSGSESFMDYKSDGEYMR", "length": 368, "header": "tr|F1SPB4-1|F1SPB4_PIG Isoform 1 of Popeye domain containing 2 OS=Sus scrofa OX=9823 GN=POPDC2 PE=3 SV=1 CANONICAL=F1SPB4-1" }, "locus": { "chromosome": "13", "start_pos": 140614556, "end_pos": 140602037, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013015.3", "url": "https://www.ensembl.org/id/ENSSSCT00000013015.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012673.1", "url": "https://www.ensembl.org/id/ENSSSCP00000012673.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPB4", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HQX3-1", "protein_name": "Popeye domain-containing protein 2", "gene_name": "Popdc2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSVNSSTLGQLLWRGPVCSSWKQSMEGSVYHLANCFLLMGFMAGSGVYGCFYLFGILGPGYLCYVLWGWFDACGLDIVLWNVLLTAACLLQLAHLVYRLRVNTLPEEFNLLYKTLCLPLQVPLQVYKEIVHCCQEQVLTLATEQTYAVEGETPINRLSLLLSGRVRVSQDGQFLHYIFPYQFMDSPEWESLPPSEEGTFQVTLTAETECSYISWPRKNLHLLLSRERYISRLFSALLGYDISEKLYTLNDKLFAKFGLRFDIRLPSLYHVLGSSASDGGPESEKDDEEVFEAAVSSAQARPICILPMPPCSPTPATTNFPAPLPRARMSRPDSGTLASRTPLQNSSRVMSRAQAPLAPTHTPEL", "length": 364 }, "evidence": [ { "id": "F1SPB4", "url": "https://omabrowser.org/oma/group/F1SPB4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1A431-1", "protein_name": "Popeye domain containing 2", "gene_name": "POPDC2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSTSSLSWDQAVLQPPACDAWKEHMEGAAYHLASCIVLLGYMGGSGIFGSLYIFGLLAPGYFCYALWGWLSACGLDILVWNALLVLTCVLQLAHLAYRLRRDTVPEEFELLYKAMYLPLQVPLEVYREIVKCCEEQVQSLGRDQNYAVEGKTPIDRLSLLLSGRVRVSQDGQFLHYIFPYQFLDSPEWESLRPSEEGTFQVTLTAETDCSYITWPRRRLYLLLRKDRYIARLFSSHLGYDISEKLYSLNEKLFAKFGLRFDIRLPSLYHVLGCRAHHSLTTGWTGPRNPLHSLHHHHQLLHALGPPGPRATCWPLRTSGATFLLPAKDELHWLPRRPPSSREQQAVWIPSPPEGSVYSHTFLTRWTHCSTHQNVCLHGHGHSGAHEAHAWDCSDPPAPPTPQCLLQPASPRVIPWFGF", "length": 418 }, "evidence": [ { "id": "F1SPB4", "url": "https://omabrowser.org/oma/group/F1SPB4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9HBU9-1", "protein_name": "Popeye domain-containing protein 2", "gene_name": "POPDC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSANSSRVGQLLLQGSACIRWKQDVEGAVYHLANCLLLLGFMGGSGVYGCFYLFGFLSAGYLCCVLWGWFSACGLDIVLWSFLLAVVCLLQLAHLVYRLREDTLPEEFDLLYKTLCLPLQVPLQTYKEIVHCCEEQVLTLATEQTYAVEGETPINRLSLLLSGRVRVSQDGQFLHYIFPYQFMDSPEWESLQPSEEGVFQVTLTAETSCSYISWPRKSLHLLLTKERYISCLFSALLGYDISEKLYTLNDKLFAKFGLRFDIRLPSLYHVLGPTAADAGPESEKGDEEVCEPAVSPPQATPTSLQQTPPCSTPPATTNFPAPPTRARLSRPDSGILASRIPLQSYSQVISRGQAPLAPTHTPEL", "length": 364 }, "evidence": [ { "id": "F1SPB4", "url": "https://omabrowser.org/oma/group/F1SPB4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "heart development", "id": "GO:0007507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007507", "evidence": [ { "database": "UniProtKB", "id": "F1SPB4", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" } ], "pmid": "" }, { "name": "regulation of membrane potential", "id": "GO:0042391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042391", "evidence": [ { "database": "UniProtKB", "id": "F1SPB4", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" } ], "pmid": "" }, { "name": "striated muscle cell differentiation", "id": "GO:0051146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051146", "evidence": [ { "database": "UniProtKB", "id": "F1SPB4", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" } ], "pmid": "" }, { "name": "skeletal muscle tissue development", "id": "GO:0007519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007519", "evidence": [ { "database": "UniProtKB", "id": "F1SPB4", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "sarcolemma", "id": "GO:0042383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042383", "evidence": [ { "database": "UniProtKB", "id": "F1SPB4", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cAMP binding", "id": "GO:0030552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030552", "evidence": [ { "database": "UniProtKB", "id": "F1SPB4", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPB4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPB4" }, { "id": "PF04831", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04831" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "POPDC1-3", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 251, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPB5-1", "uniprot_ac": "F1SPB5", "uniprot_id": "F1SPB5_PIG", "mass": { "chemical_mass": 89635.0, "monoisotopic_mass": 89635.0 }, "refseq": {}, "gene_names": [ { "name": "CFAP91", "type": "recommended", "evidence": [ { "id": "F1SPB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPB5" } ] } ], "protein_names": [ { "name": "Cilia- and flagella-associated protein 91", "type": "recommended", "evidence": [ { "id": "F1SPB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPB5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPB5", "url": "https://www.uniprot.org/uniprotkb/F1SPB5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFAP91", "url": "https://www.uniprot.org/uniprotkb/F1SPB5", "locus": { "chromosome": "13", "start_pos": 140437096, "end_pos": 140566877, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011892", "url": "https://www.ensembl.org/id/ENSSSCG00000011892" } ] } } ], "crossref": [ { "id": "F1SPB5", "url": "https://alphafold.ebi.ac.uk/entry/F1SPB5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011892", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011892", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154779", "url": "https://www.ncbi.nlm.nih.gov/gene/100154779", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154779", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154779", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VQTMYRD", "url": "https://omabrowser.org/oma/group/VQTMYRD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPB5", "url": "https://www.orthodb.org/?gene=F1SPB5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22455", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22455", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22455:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22455:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14738", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14738", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SPB5", "url": "https://www.uniprot.org/uniprotkb/F1SPB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPB5-1", "url": "https://www.uniprot.org/uniprotkb/F1SPB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHVVTITEPQAKPQMSQTQCRGKSGTWGNVSASRTYDFLYDPLFIVSSEKDHNRANNQATLIRSKLRRVPRFRTMFSSLFHYPNHSVYWSKADPVPSFISREWKGLEERHREAFRHLAETDTSFLMPKEVYEDPDVTGKNRYKYFERPFLPFHQRVPFSVVYASTRAEPYTFPSPSTKYSPIPSKYTVSTQTDYRDGEAQTDPYSPEYVICQDSIPELLTLATLTWGRGLPAGQAEVEMIERAREKRAWEATLPPLSDTSQFEKRRRMMNAMERKEWAFREQEIEKLQEIRLEVLKELLKKRDENQNEVNMARLNAQWSKLQKVKEAKLAQIQHTHVSAIRKLMGKGKNIEGKLERRNIIKDYSDYASQVYGPLSRLGRFPDNNSEDFVVKNHYLNTYEGLVELESCLPEFVTQPRIRAPKPKVTTTKAGFLKRAARRDHELAEVHKALLDKKNKVLKTKKPMRFLQRKPVPQPRLPTPTLEMSSNEEEDIEMAVIYLQKLLRGRVIQNMMFEGKEKRLELIQELRTSQALQEDDRLVKKAEKQVTLALQRQRNLHEHKVSLFENHLAGLEGRVLADMFDFLSKELVRLQEERRVHALAMLAERQRRMREAEESGRRQVEQRRLQEEDQIFKEVIKVHQSTVTSYLEDIILNTEENTAEEQARAEIEKMAEEINDIAYEMESRRTQLQSEEIVAELVYSFLIPEVQKDFVKEKVRNAQRKHILAAHEIIHRHTEAMLEKNFFAQHQESDSKLFEGESENEQNS", "length": 764, "header": "tr|F1SPB5-1|F1SPB5_PIG Isoform 1 of Cilia- and flagella-associated protein 91 OS=Sus scrofa OX=9823 GN=CFAP91 PE=3 SV=3 CANONICAL=F1SPB5-1" }, "isoforms": [ { "isoform_ac": "F1SPB5-1", "url": "https://www.uniprot.org/uniprotkb/F1SPB5/entry#F1SPB5-1", "sequence": { "sequence": "MSHVVTITEPQAKPQMSQTQCRGKSGTWGNVSASRTYDFLYDPLFIVSSEKDHNRANNQATLIRSKLRRVPRFRTMFSSLFHYPNHSVYWSKADPVPSFISREWKGLEERHREAFRHLAETDTSFLMPKEVYEDPDVTGKNRYKYFERPFLPFHQRVPFSVVYASTRAEPYTFPSPSTKYSPIPSKYTVSTQTDYRDGEAQTDPYSPEYVICQDSIPELLTLATLTWGRGLPAGQAEVEMIERAREKRAWEATLPPLSDTSQFEKRRRMMNAMERKEWAFREQEIEKLQEIRLEVLKELLKKRDENQNEVNMARLNAQWSKLQKVKEAKLAQIQHTHVSAIRKLMGKGKNIEGKLERRNIIKDYSDYASQVYGPLSRLGRFPDNNSEDFVVKNHYLNTYEGLVELESCLPEFVTQPRIRAPKPKVTTTKAGFLKRAARRDHELAEVHKALLDKKNKVLKTKKPMRFLQRKPVPQPRLPTPTLEMSSNEEEDIEMAVIYLQKLLRGRVIQNMMFEGKEKRLELIQELRTSQALQEDDRLVKKAEKQVTLALQRQRNLHEHKVSLFENHLAGLEGRVLADMFDFLSKELVRLQEERRVHALAMLAERQRRMREAEESGRRQVEQRRLQEEDQIFKEVIKVHQSTVTSYLEDIILNTEENTAEEQARAEIEKMAEEINDIAYEMESRRTQLQSEEIVAELVYSFLIPEVQKDFVKEKVRNAQRKHILAAHEIIHRHTEAMLEKNFFAQHQESDSKLFEGESENEQNS", "length": 764, "header": "tr|F1SPB5-1|F1SPB5_PIG Isoform 1 of Cilia- and flagella-associated protein 91 OS=Sus scrofa OX=9823 GN=CFAP91 PE=3 SV=3 CANONICAL=F1SPB5-1" }, "locus": { "chromosome": "13", "start_pos": 140566830, "end_pos": 140459568, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013013.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013013.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012671.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012671.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPB5", "url": "https://www.uniprot.org/uniprotkb/F1SPB5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154779", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154779", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BB04-1", "protein_name": "Cilia- and flagella-associated protein 91", "gene_name": "CFAP91", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSHVVTIEEPQAKPQVSQTRFGGKSGAWGNVSASRTYDFLYDPLFIVSSEKDHNQANIQATVIRSKLRRVPRFRTMFSSLFHYPRYSVYWSKADPVPSFISRDWKRHEQRHREALQQLAAIDASFQMPKEVYEDPDVTGKNRYKYFERPFLPFYQQMPFNVVFASTRADPYTFPPPPTKYLPIPSKYTVGTQTDYRDAEVQTDPYSPEYVVCQDSIPELLTLATLTWGRGLPAGQAEVEMIERAREKRAWEDTLPPLSDTSQFEKRRRMMNAMERKEWAFREQEIEKLQEIRLEVLKELLKKRDENQNEVNMARLNAQWSKLQEAKEAKLAQIQRKHVSAIRKLMGKGKNIEGKLERRNIIKDYCDYASQVYGPLSRLGRFPDNNSEDFVVKNHYLNTYEGLVELESCLPDFVTQPRIKPPKPKVTTTKDGFLKRAARVDRELAEVHKALLEKKNKDFEAKKPMRFLQRKPVPQPRLPTPTLEMSSNEEEDIEMAVIYLQKLLRGRVVQNMMFEGKEKRLELIQELRTSHALQEDDRLVKKAEKQVTLALQRQRNLHEHKVSLVENHLAGLEGRVLADMFDFLSKELVRLQEERRVHALAMLAERQRRMREAEESGRRQVEQRRLQEEDQIFKEVIKVHQSTVTSYLEDIILNTEENTAEEQARAEIEKMAEEINDIAYEMESRRTQLQSEEIVAELVYSFLIPEVQKDFVKEKVRNSQRKHILAAHQIIHRHTEDMLKTHFVEQRQTPDAELLEGETEKEQNT", "length": 764 }, "evidence": [ { "id": "F1SPB5", "url": "https://omabrowser.org/oma/group/F1SPB5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1Q5Z7-1", "protein_name": "Cilia- and flagella-associated protein 91", "gene_name": "cfap91", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVSVTRTFDKKNEGNKGFRQQRTYDYLYDPVYTLSADVDHGRENIRAQASLDRMRRVPEFNSMISDLPHHPQYSLRLEATDPVPGFIDRRWRGYAEQRRQALQQLTGIVSGAVTHAPNPANVTGVDRWKFFKRPLIPFAQQIPPDVVFALPKSDLLSSDGDDKRSPTPFQRSVAVQTDYRESETQTDPYSPSYLLRPGTTSPELLTLATLTWGHGLPAGLAEVEMIKRARIKRAWEATLPPLNDLSQLDKRRRMMEEMERKEWAFREQEIEKLQETRLTLLLQLLRQREEEQEEVKMERLDASFSQRQNEKEARLKKIRSDYIIAMRKLLAKRKNVEGNLEKRDIIKDYSDYGSQMYAPLARTGQTPDRNSNRSTVKSHFLSTYQGLLELEASLSPSVTLPQIKVPKPKVTKGFISRSARRDLELMKTHQALKEEKVCRVEKKPLRFLFKKEKPVPRPPTPTVEKPPEGDEERELAIIFLQKLLRGRSTQNQMFEEKERWLELIQELRTTHALQKEEQDKKEVEKQVTLALQRQRDFQIDREAQIESFTAALSGGVIVDMLDFLSKELVRLQEERRIHAFTLLAERDRRIREAEESGRRQIEERRRREEDEIFKQVVRVHQDTVDMYLEDVILTSINQTADAQAREEIHRKAEELNNITYAMEETMNSQQSEEIVAELVYRFLIPEVQKMDFRERVRHSQRRHLQAARLIISPGSTVPTEPQSPSYRASSAILNHILSQVEEVVPGNLTSRDPEPTQNTLTSHTKTEDTHNTDGKKADSAQGQL", "length": 785 }, "evidence": [ { "id": "F1SPB5", "url": "https://omabrowser.org/oma/group/F1SPB5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7Z4T9-7", "protein_name": "Cilia- and flagella-associated protein 91", "gene_name": "CFAP91", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSHAVTIEEPQAQPQVSQTRYRERSRAGSHISSNRAYDFLYDPLFIVSSEKDHTQANIQATLIRSRLRKVPRFKTMFSNLIHYPRYSLYWSKSDPVPPFISREWKGHKEKHREALRQLTTTDASFQMPKEVYEDPEVTGKNRYKYFERPFLPFFQQMPFNVVYAVSKAEPYTFPPTSTKHLSIPSKSTVGTQTDYRDADVQTDPYSAEYVVCQDSIPELLTLATLTWGRGLPAGQAEVEMIERAREKRAWEASLPALSDTSQFEKRRKMMNEMERKEWAFREQEIEKLQEIRLEVLKELLRKREENQNEVNMKHLNARWSKLQEGKEAKMAKIQRTHVSTIRKLVGKRKNIEGKLERRNIIKDYSDYASQVYGPLSRLGCFPDNNSEDFVVKNYYLNTYEGLVELESCLPDFVTQPQIRAPKPKVITTKAGFLKRAARLDYELAEVHKALLDKKNKVLEVKKPPRFLQRNPIPQPRLPTPTLEMTSNEEEEMEMAVIYLQKLLRGRVVQNMMFEGKEKRLELIQELRTCHALQEDEKLVKKAEKQVTLALQRQRNLHEHKVSLVENHLAGLEGRALADMFDFLSKELVRLQEERRIHAFVMLAERQRRVREAEESGRRQVEKQRLREEDEIFKEVVKVHHSTISSYLEDIILNTEANTAEEQARAEIEKMAEKINDIAYEMESRRTYLQSEEIVAELVYSFLIPEVQKYFVKEKVRNAQRKHILAAHQIIHSYTESMVQKKLTEGEQDEASNAAMLLEKETQNENNS", "length": 767 }, "evidence": [ { "id": "F1SPB5", "url": "https://omabrowser.org/oma/group/F1SPB5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BRC6-2", "protein_name": "Cilia- and flagella-associated protein 91", "gene_name": "Cfap91", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSQTVTIQEPRPNDQRIPYQCREVRRAKGGFANRTYDYLYDPLFIVSSERDHAQANIQATLIRSRLKKVPNFRSMFSNLFHHPRYSMYWSKTDPVPLHVTREWRGQEAKHKEVLRLQAAMDTSFQMPKEKDEDPDVSGKNRYKFFDRPFLPFLQQMPLNVVLSPVKTQPLLLTPESSKYAIIPTKSTVATQTDYRDADVQTDPYSPEYVVCQDTIPELLTLANLTWGRGLPAGQAEVEIIERAREKRAWEATLPPLNDSVQAEKRRKMMNAMERKEWAFREGEIEKLQELRLEVLKQLLKRREEDQNELNMRHLNDQWYKLQEAKEAKVAQIRHKHVSDIRKLMGKGKNIEGKLQRRDIISDYSNFASQVYGPLSRLGRFPDNNSEDFVVRNHYLNTYEGLVELESSLPDFVTQPRIKPPKPQIITTKAGFLKRTARMDYELAEVHKALVDKKNKGLEGTKSLRFLQKNPISQARLPTPSLEMTSYEEGEIEMAVIYLQKLLRGRVVQNMMFEGKEKRLELILELRTSHALQEDDKLVKKAEKQVTLALQRQRNLHEDKLSVIENHLGDLEGRVLADMFDFLSKELVRLQEERRIHAFAMLAERQRRMREAEESGRRQVEQKRLQQEDMIFKEVIKVHQSTVTSYLEDIILNTEERTAEEQARKEIEKIAEEINNIAYEMENRRTYLQSEEIVAELVYSFLIPEVQKDFVKEKVRNAQRKHILAAHEIIHSNTETMLEEQVYKELQSEDFELEEEAESLDSEVPTVSVSKTSTIKPTQDEGEG", "length": 783 }, "evidence": [ { "id": "F1SPB5", "url": "https://omabrowser.org/oma/group/F1SPB5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "axonemal central apparatus assembly", "id": "GO:1904158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904158", "evidence": [ { "database": "UniProtKB", "id": "F1SPB5", "url": "https://www.uniprot.org/uniprotkb/F1SPB5" } ], "pmid": "" }, { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SPB5", "url": "https://www.uniprot.org/uniprotkb/F1SPB5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "F1SPB5", "url": "https://www.uniprot.org/uniprotkb/F1SPB5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPB5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 764, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPB5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPB5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPB5" }, { "id": "PF14738", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14738" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CFAP91", "eco_id": "ECO_0000259", "start_pos": 191, "end_pos": 343, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 30, "end_pos": 32 }, { "start_pos": 384, "end_pos": 386 }, { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPD6-1", "uniprot_ac": "F1SPD6", "uniprot_id": "F1SPD6_PIG", "mass": { "chemical_mass": 79450.0, "monoisotopic_mass": 79450.0 }, "refseq": { "ac": "XP_020925935", "name": "F-box only protein 40", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925935" }, "gene_names": [ { "name": "FBXO40", "type": "recommended", "evidence": [ { "id": "F1SPD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPD6" } ] }, { "name": "FBXO40", "type": "synonym", "evidence": [ { "id": "XP_020925935", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925935" } ] } ], "protein_names": [ { "name": "F-box only protein 40", "type": "synonym", "evidence": [ { "id": "XP_020925935", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925935" } ] }, { "name": "F-box protein 40", "type": "synonym", "evidence": [ { "id": "F1SPD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPD6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPD6", "url": "https://www.uniprot.org/uniprotkb/F1SPD6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBXO40", "url": "https://www.uniprot.org/uniprotkb/F1SPD6", "locus": { "chromosome": "13", "start_pos": 138881513, "end_pos": 138905356, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011885", "url": "https://www.ensembl.org/id/ENSSSCG00000011885" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011885", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011885", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22175", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22175", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100171390", "url": "https://www.ncbi.nlm.nih.gov/gene/100171390", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001293", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001293", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043013", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043013", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100171390", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100171390", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RKKIWQF", "url": "https://omabrowser.org/oma/group/RKKIWQF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPD6", "url": "https://www.orthodb.org/?gene=F1SPD6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15933", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15933", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15933:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15933:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15965", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15965", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15966", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15966", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020925935", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925935", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SPD6", "url": "https://www.uniprot.org/uniprotkb/F1SPD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPD6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRARRPPPGEHRHCERCFNRHCHLPVEPSVSCLVISCHLSCGATFHMCKEAEHELLCPLEQVPCLNSEYGCPLSMPRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKEPPSEECLDTALALQDQKVLFKSLNMVELFPETREPTEEEPTLNGEASWEETGGAVGGADAGLVTLSAANGEGAELSQEEREMLAKTKEGMDLAKFDKWENMFSKEHAASALTSSSVRCEGKSKDGPEKEQISSGNDMVEEGAAKGKEPQEEQKQQDFSAAIEKTGLAPWQDGVLERLKTAVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKRARLGDAMLSCRPSEHKAVDTSDLGITVEDLPKSDLIKTTLLCALERELKGHVISESRSIDGLFMDFATQTYSFEPEQFSSGTVLADLTSANPNGLHVELHSECVTRRHNKSSSAFTFTCNKFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFIQNHFRPPGQKAKVIYSQELNTFAIKPEVASELSERWKNSHLSGHGGKSQNSLTSLPLEILQYIAGFLDSISLSQLSQVSVLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHRKIWQFSSLFSKIKSWEFNEVASMSEHLKSCPFNIVEHKTDPILLTSMCQPHEQARETLVSTFRARTRGRHAY", "length": 706, "header": "tr|F1SPD6-1|F1SPD6_PIG Isoform 1 of F-box protein 40 OS=Sus scrofa OX=9823 GN=FBXO40 PE=4 SV=2 CANONICAL=F1SPD6-1" }, "isoforms": [ { "isoform_ac": "F1SPD6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPD6/entry#F1SPD6-1", "sequence": { "sequence": "MGRARRPPPGEHRHCERCFNRHCHLPVEPSVSCLVISCHLSCGATFHMCKEAEHELLCPLEQVPCLNSEYGCPLSMPRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKEPPSEECLDTALALQDQKVLFKSLNMVELFPETREPTEEEPTLNGEASWEETGGAVGGADAGLVTLSAANGEGAELSQEEREMLAKTKEGMDLAKFDKWENMFSKEHAASALTSSSVRCEGKSKDGPEKEQISSGNDMVEEGAAKGKEPQEEQKQQDFSAAIEKTGLAPWQDGVLERLKTAVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKRARLGDAMLSCRPSEHKAVDTSDLGITVEDLPKSDLIKTTLLCALERELKGHVISESRSIDGLFMDFATQTYSFEPEQFSSGTVLADLTSANPNGLHVELHSECVTRRHNKSSSAFTFTCNKFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFIQNHFRPPGQKAKVIYSQELNTFAIKPEVASELSERWKNSHLSGHGGKSQNSLTSLPLEILQYIAGFLDSISLSQLSQVSVLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHRKIWQFSSLFSKIKSWEFNEVASMSEHLKSCPFNIVEHKTDPILLTSMCQPHEQARETLVSTFRARTRGRHAY", "length": 706, "header": "tr|F1SPD6-1|F1SPD6_PIG Isoform 1 of F-box protein 40 OS=Sus scrofa OX=9823 GN=FBXO40 PE=4 SV=2 CANONICAL=F1SPD6-1" }, "locus": { "chromosome": "13", "start_pos": 138891174, "end_pos": 138884576, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013002.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013002.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012660.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012660.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPD6", "url": "https://www.uniprot.org/uniprotkb/F1SPD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100171390", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100171390", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "F1LXQ1-1", "protein_name": "F-box protein 40", "gene_name": "Fbxo40", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRARRPPPALHRHCEGCIDRHCRVPAEPSVSCLVISCHLLCGATFHMCKESEHTLLCPLEQVPCLNSEYGCPLSMARHKLAKHLQVCPASVVCCSMEWNRWPNVDSETVLHENIMKESPSEECLDTALALQDQKVLFRSLKMVELFPETRDATEEEPAMNGDTSWEETAGAVGGVDAGLVPNSCLPATNGQTMELSQEERDALAKTKEGMDLDKFGKWESMFSKEHAASVLTGSSGKSEDKNENVSGKEQRSGDGSTGDAECSTERRGPQESPKPQEPPTTIEMTGLAPWQDGVLERLKTAVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGNLEAQEVKTVYTFKIPVSYCGKRARLGDAMLRCRPSEHKAVDTSDLGISVEDLPKSDLIKTTLQCALERELKGHVISESRSIDGLFMDLATQTYNFESEQFSSETVLADLLGTTQSGGLHVELHSECVTRRHNKSSSAFTFTCNKFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQELKTFAIKPEVAPELSEKWKSDHLSGRDGKSLNSLTSLPLEVLQYIAGFLDSISLSQLSQVSVLMRNICATLLQERGMVLLQWKKKRYSHGGTSWKVHNQIWQFSSLFSKIKSWEFNDVTSMSEHLKTCPFNVVEHKTDPIRLTSMCQPQEQARESLVSTFRARPRGRHS", "length": 710 }, "evidence": [ { "id": "F1SPD6", "url": "https://omabrowser.org/oma/group/F1SPD6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9UH90-1", "protein_name": "F-box only protein 40", "gene_name": "FBXO40", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGKARRSPPGHHRHCEGCFNRHCHIPVEPNTSCLVISCHLLCGATFHMCKEAEHQLLCPLEQVPCLNSEYGCPLSMSRHKLAKHLQVCPASVVCCSMEWNRWPNVDSETTLHENIMKETPSEECLDTALALQDQKVLFRSLKMVELFPETREATEEEPTMNGETSVEEMGGAVGGVDIGLVPHGLSATNGEMAELSQEEREVLAKTKEGMDLVKFGQWENIFSKEHAASALTNSSASCESKNKNDSEKEQISSGHNMVEGEGAPKKKEPQENQKQQDVRTAMETTGLAPWQDGVLERLKTAVDAKDYNMYLVHNGRMLIHFGQMPACTPKERDFVYGKLEAQEVKTVYTFKVPVSYCGKRARLGDAMLSCKPSEHKAVDTSDLGITVEDLPKSDLIKTTLQCALERELKGHVISESRSIDGLFMDFATQTYNFEPEQFSSGTVLADLTAATPGGLHVELHSECVTRRHNKSSSAFTFTCNKFFRRDEFPLHFKNVHTDIQSCLNGWFQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQELKTFAIKPEVAPELSEGRKNNHLLGHGGKSQNSLTSLPLEILKYIAGFLDSVSLAQLSQVSVLMRNICATLLQERGMVLLQWKKKRYSHGGTSWRVHREIWQFSSLFSKIKSWEFNEVTSMSEHLKSCPFNIVEHKTDPILLTSMCQPREQARESLVSTFRIRPRGRYVS", "length": 709 }, "evidence": [ { "id": "F1SPD6", "url": "https://omabrowser.org/oma/group/F1SPD6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SPD6", "url": "https://www.uniprot.org/uniprotkb/F1SPD6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SPD6", "url": "https://www.uniprot.org/uniprotkb/F1SPD6" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SPD6", "url": "https://www.uniprot.org/uniprotkb/F1SPD6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "muscle cell differentiation", "id": "GO:0042692", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042692", "evidence": [ { "database": "UniProtKB", "id": "F1SPD6", "url": "https://www.uniprot.org/uniprotkb/F1SPD6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 466, "end_pos": 468, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPD6" }, { "id": "PS50181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-box", "eco_id": "ECO_0000259", "start_pos": 567, "end_pos": 621, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SPD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPD6" }, { "id": "PS50145", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50145" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRAF-type", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 96, "start_aa": "His", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 466, "end_pos": 468 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPF2-1", "uniprot_ac": "F1SPF2", "uniprot_id": "F1SPF2_PIG", "mass": { "chemical_mass": 39416.0, "monoisotopic_mass": 39416.0 }, "refseq": { "ac": "XP_003132462", "name": "carbohydrate sulfotransferase 13", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132462" }, "gene_names": [ { "name": "CHST13", "type": "recommended", "evidence": [ { "id": "F1SPF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ] }, { "name": "CHST13", "type": "synonym", "evidence": [ { "id": "XP_003132462", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132462" } ] } ], "protein_names": [ { "name": "Carbohydrate sulfotransferase", "type": "recommended", "evidence": [ { "id": "F1SPF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPF2/entry#names_and_taxonomy" } ] }, { "name": "2.8.2.-", "type": "synonym", "evidence": [ { "id": "F1SPF2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPF2/entry#names_and_taxonomy" } ] }, { "name": "carbohydrate sulfotransferase 13", "type": "synonym", "evidence": [ { "id": "XP_003132462", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132462" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHST13", "url": "https://www.uniprot.org/uniprotkb/F1SPF2", "locus": { "chromosome": "13", "start_pos": 73350671, "end_pos": 73366085, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011625", "url": "https://www.ensembl.org/id/ENSSSCG00000011625" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011625", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011625", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519444", "url": "https://www.ncbi.nlm.nih.gov/gene/100519444", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519444", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519444", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RYFKHIS", "url": "https://omabrowser.org/oma/group/RYFKHIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPF2", "url": "https://www.orthodb.org/?gene=F1SPF2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12137", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12137", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12137:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12137:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03567", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03567", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003132462", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132462", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPF2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPF2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRRCWRRRALAAACLGAALLLLLLGVAPRALRPVFDNRAVGSSWLGGRRRSPLQMLHDLDQGRLSDLAEVHRQRRDWLRRTCSRHTRRQHLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGRAPSDPRTIPAHEAHAPGRLPSLADFSPAEVNRRLRAYLAFLFVREPFERLASAYRNKLQRPWGADFQRRFGTSIVRRLRPRPGPDALTRGHDVRFAEFLAYLLDPRTRRDGPFNEHWERTHALCHPCRLRYDVVGKFETLAEDAAFVLSLVGAPGLRFPEPPPGAGAAAAHDRAARLFRDISPFYQRRLFGLYKMDFLLFNYSAPSYLRLR", "length": 343, "header": "tr|F1SPF2-1|F1SPF2_PIG Isoform 1 of Carbohydrate sulfotransferase OS=Sus scrofa OX=9823 GN=CHST13 PE=3 SV=2 CANONICAL=F1SPF2-1" }, "isoforms": [ { "isoform_ac": "F1SPF2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPF2/entry#F1SPF2-1", "sequence": { "sequence": "MGRRCWRRRALAAACLGAALLLLLLGVAPRALRPVFDNRAVGSSWLGGRRRSPLQMLHDLDQGRLSDLAEVHRQRRDWLRRTCSRHTRRQHLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGRAPSDPRTIPAHEAHAPGRLPSLADFSPAEVNRRLRAYLAFLFVREPFERLASAYRNKLQRPWGADFQRRFGTSIVRRLRPRPGPDALTRGHDVRFAEFLAYLLDPRTRRDGPFNEHWERTHALCHPCRLRYDVVGKFETLAEDAAFVLSLVGAPGLRFPEPPPGAGAAAAHDRAARLFRDISPFYQRRLFGLYKMDFLLFNYSAPSYLRLR", "length": 343, "header": "tr|F1SPF2-1|F1SPF2_PIG Isoform 1 of Carbohydrate sulfotransferase OS=Sus scrofa OX=9823 GN=CHST13 PE=3 SV=2 CANONICAL=F1SPF2-1" }, "locus": { "chromosome": "13", "start_pos": 73366053, "end_pos": 73351441, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012722.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012722.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012388.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012388.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519444", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519444", "resource": "KEGG Pathway" }, { "id": "R-SSC-2022870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022870", "resource": "Reactome", "description": "CS-GAG biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "D3Z6E3-1", "protein_name": "Carbohydrate sulfotransferase", "gene_name": "Chst13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRRSCCRRPLPVVASLGAALLLLCALRPAFENKALGSSWFGGVRKSPLQLLRDLDQGPRSAMAEVHQQRRELLRRACSRHTRRQRLLQPEDLRHVLVDDAHRLLYCYVPKVACTNWKRVMLALRGRGDPSAIPAHEAHAPGLLPSLADFAPAEVNWRLRDYLTFLFVREPFERLASAYRNKLARPHSAAFQRRYGTRIVRRLRPHAQPDALARGHDVRFAEFLAYLLDPRTRRHEPFNEHWERAHALCHPCLVRYDVVGKFETIADDAAFVLDLVGEPGLRFPAPPLRPEKDLTREQARRLFQDISPFYQRRLFNLYKMDFLLFNYSAPSYLRLQ", "length": 336 }, "evidence": [ { "id": "F1SPF2", "url": "https://omabrowser.org/oma/group/F1SPF2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZPV0-1", "protein_name": "Carbohydrate sulfotransferase", "gene_name": "Chst13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRRSCCRRPLPVVASLGAALLFLCAAPRALRPAFENKVLGSGWFGGERKSPLQLLRELDQGPRSAMAEVHQQRRELLRRACSRHTRRQRLLQPEDLRHVLVDDKHRLLYCYVPKVACTNWKRVLLALRGRGDPGAIPAHEAHEPGLLPSLADFAPAEVNRRLRDYLTFLFVREPFERLASAYRNKLARPHSAAFQRRYGTRIVRRLRPHAQPDALARGHDVRFAEFLAYLLDPRTRRYEPFNEHWERAHALCHPCLVRYDVVGKFETLADDAAFVLHLVGEPGLRFPAPPLRPEKDLTRVQARRLFQDISPFYQRRLFDLYKMDFLLFNYSAPSYLRLQ", "length": 340 }, "evidence": [ { "id": "F1SPF2", "url": "https://omabrowser.org/oma/group/F1SPF2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NET6-1", "protein_name": "Carbohydrate sulfotransferase 13", "gene_name": "CHST13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRRCCRRRVLAAACLGAALLLLCAAPRSLRPAFGNRALGSSWLGGEKRSPLQKLYDLDQDPRSTLAKVHRQRRDLLNSACSRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISAQEAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLASAYRNKLARPYSAAFQRRYGARIVQRLRPRALPDARARGHDVRFAEFLAYLLDPRTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGLAGASDLSFPGPPRPRGAAASRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAPSYLRLL", "length": 341 }, "evidence": [ { "id": "F1SPF2", "url": "https://omabrowser.org/oma/group/F1SPF2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VJG5-1", "protein_name": "Carbohydrate sulfotransferase", "gene_name": "C4st", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDQLVWLSFCISIGFSLLGNFSTGLPFEDGNNNNVKITRRSLELTQTINIQRQEFMQRQCELLGDHTQTLEDLSELQMDHMIVDKEHKLLYCYVPKVACTNWKRVLMMLTNKWHNGTDPLQIPGSLAHSVGMFTKLYDLSEAEQQQVLSDEYTRFILVRHPLERLLSAYRNKLEGDSPSARYFQSRVGRQIVKELRPGASNNSLERGDDVSFGEFIQYLVTPELSRANQSDYNEHWEVIAKLCNPCVMKYNVVGKYDTLLDDSALALYLAGADNLTFPTGHKPSSTRANLRNYFDPLPIGAIRKLYDIYEDDFRLFDYALDEVLGFEFG", "length": 329 }, "evidence": [ { "id": "F1SPF2", "url": "https://omabrowser.org/oma/group/F1SPF2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "sulfotransferase activity", "id": "GO:0008146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008146", "evidence": [ { "database": "UniProtKB", "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ], "pmid": "" }, { "name": "dermatan 4-sulfotransferase activity", "id": "GO:0001537", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001537", "evidence": [ { "database": "UniProtKB", "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ], "pmid": "" }, { "name": "chondroitin 4-sulfotransferase activity", "id": "GO:0047756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047756", "evidence": [ { "database": "UniProtKB", "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "carbohydrate biosynthetic process", "id": "GO:0016051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016051", "evidence": [ { "database": "UniProtKB", "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ], "pmid": "" }, { "name": "chondroitin sulfate proteoglycan biosynthetic process", "id": "GO:0050650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050650", "evidence": [ { "database": "UniProtKB", "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ], "pmid": "" }, { "name": "proteoglycan biosynthetic process", "id": "GO:0030166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030166", "evidence": [ { "database": "UniProtKB", "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SPF2", "url": "https://www.uniprot.org/uniprotkb/F1SPF2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 333, "end_pos": 335, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1971483", "name": "CHST11,12,13,9 transfer sulfate to (4-)GalNAc", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1971483", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1971483" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 333, "end_pos": 335 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPK2-1", "uniprot_ac": "F1SPK2", "uniprot_id": "F1SPK2_PIG", "mass": { "chemical_mass": 36046.0, "monoisotopic_mass": 36046.0 }, "refseq": {}, "gene_names": [ { "name": "H1-8", "type": "recommended", "evidence": [ { "id": "F1SPK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ] } ], "protein_names": [ { "name": "Histone H1.8", "type": "recommended", "evidence": [ { "id": "F1SPK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK2/entry#names_and_taxonomy" } ] }, { "name": "Histone H1oo", "type": "synonym", "evidence": [ { "id": "F1SPK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK2/entry#names_and_taxonomy" } ] }, { "name": "Oocyte-specific histone H1", "type": "synonym", "evidence": [ { "id": "F1SPK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK2/entry#names_and_taxonomy" } ] }, { "name": "Oocyte-specific linker histone H1", "type": "synonym", "evidence": [ { "id": "F1SPK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a key role in the control of gene expression during oogenesis and early embryogenesis, presumably through the perturbation of chromatin structure. Essential for meiotic maturation of germinal vesicle-stage oocytes. The somatic type linker histone H1c is rapidly replaced by H1oo in a donor nucleus transplanted into an oocyte. The greater mobility of H1oo as compared to H1c may contribute to this rapid replacement and increased instability of the embryonic chromatin structure. The rapid replacement of H1c with H1oo may play an important role in nuclear remodeling.", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2#function" }, { "database": "UniProtKB", "id": "ARBA00056213", "url": "https://www.uniprot.org/uniprotkb/ARBA00056213#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "H1-8", "url": "https://www.uniprot.org/uniprotkb/F1SPK2", "locus": { "chromosome": "13", "start_pos": 68942744, "end_pos": 68938024, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011591", "url": "https://www.ensembl.org/id/ENSSSCG00000011591" } ] } } ], "crossref": [ { "id": "F1SPK2", "url": "https://alphafold.ebi.ac.uk/entry/F1SPK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011591", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011591", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00073", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00073", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR005818", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005818", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PF00538", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00538", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RSPWLKVSSDLSSLGPLPLFLTLLVHLQKKQSCLIKSSIREPRRHPPVLRMVLEALQAGEQRRGTSVAAIKVYILQKYPTVDVFRLKYLLKQALATGMHRGLLVRPVNSKAKGATGSFKLVPKHKRKIQSRKTSTLKASRRPGQAKEKDPKKAKKAKKDPPNPGEVKKGSRKPGQGRSGPAKTGEGMKAPQKGNKTLDQEARLGEARKCSQQPDRPTQSPPRTTGPGRKAKVKAEAEAPGKTNPGSRNSKSTDTKGENGTAKTKMGNKIPKEAVTQGTQEAPNAKAPPPAKGSGSKMEPKPPARKVEAPKGLRKPGIPTTASSSKVASKKAEAKN", "length": 335, "header": "tr|F1SPK2-1|F1SPK2_PIG Isoform 1 of Histone H1.8 OS=Sus scrofa OX=9823 GN=H1-8 PE=4 SV=3 CANONICAL=F1SPK2-1" }, "isoforms": [ { "isoform_ac": "F1SPK2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK2/entry#F1SPK2-1", "sequence": { "sequence": "RSPWLKVSSDLSSLGPLPLFLTLLVHLQKKQSCLIKSSIREPRRHPPVLRMVLEALQAGEQRRGTSVAAIKVYILQKYPTVDVFRLKYLLKQALATGMHRGLLVRPVNSKAKGATGSFKLVPKHKRKIQSRKTSTLKASRRPGQAKEKDPKKAKKAKKDPPNPGEVKKGSRKPGQGRSGPAKTGEGMKAPQKGNKTLDQEARLGEARKCSQQPDRPTQSPPRTTGPGRKAKVKAEAEAPGKTNPGSRNSKSTDTKGENGTAKTKMGNKIPKEAVTQGTQEAPNAKAPPPAKGSGSKMEPKPPARKVEAPKGLRKPGIPTTASSSKVASKKAEAKN", "length": 335, "header": "tr|F1SPK2-1|F1SPK2_PIG Isoform 1 of Histone H1.8 OS=Sus scrofa OX=9823 GN=H1-8 PE=4 SV=3 CANONICAL=F1SPK2-1" }, "locus": { "chromosome": "13", "start_pos": 68942730, "end_pos": 68938024, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012687.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012687.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012354.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012354.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "pmid": "" }, { "name": "nucleosome", "id": "GO:0000786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000786", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "double-stranded DNA binding", "id": "GO:0003690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003690", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "pmid": "" }, { "name": "nucleosomal DNA binding", "id": "GO:0031492", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031492", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "pmid": "" }, { "name": "structural constituent of chromatin", "id": "GO:0030527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030527", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "nucleosome assembly", "id": "GO:0006334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006334", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "pmid": "" }, { "name": "chromosome condensation", "id": "GO:0030261", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030261", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "pmid": "" }, { "name": "epigenetic regulation of gene expression", "id": "GO:0040029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0040029", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "pmid": "" }, { "name": "negative regulation of DNA recombination", "id": "GO:0045910", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045910", "evidence": [ { "database": "UniProtKB", "id": "F1SPK2", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 258, "end_pos": 260, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPK2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 335, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPK2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPK2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK2" }, { "id": "PS51504", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51504" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "H15", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 122, "start_aa": "Arg", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 194, "end_pos": 196 }, { "start_pos": 258, "end_pos": 260 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPK7-1", "uniprot_ac": "F1SPK7", "uniprot_id": "F1SPK7_PIG", "mass": { "chemical_mass": 46804.0, "monoisotopic_mass": 46804.0 }, "refseq": {}, "gene_names": [ { "name": "RDH5", "type": "recommended", "evidence": [ { "id": "F1SPK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ] } ], "protein_names": [ { "name": "Retinol dehydrogenase 5", "type": "synonym", "evidence": [ { "id": "F1SPK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPK7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RDH5", "url": "https://www.uniprot.org/uniprotkb/F1SPK7", "locus": { "chromosome": "5", "start_pos": 21170897, "end_pos": 21166510, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000362", "url": "https://www.ensembl.org/id/ENSSSCG00000000362" } ] } } ], "crossref": [ { "id": "F1SPK7", "url": "https://alphafold.ebi.ac.uk/entry/F1SPK7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000362", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000362", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09805", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09805", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43313", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43313", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43313:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43313:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2453902", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2453902", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5365859", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5365859", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPK7-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIKAVVNPLPPQEKTTKEGARALLVCAKPWLQPSASGLPWLLPLAPPPPSPHKHLILLAPSSPPPRDFSLGCSSCGALGRLGAKFLKRSKRSFRGCSSCSPSAEEVAWAPAMWLPLLLGVLLWALLWLLRDRQSLPTSDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLHTTLLDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQQVLNVNTLGPIGVTLALLPLLRQARGRVVNVSSVLGRLAANGGGYCVSKFGVEAFSDSLRRDVAPFGIRVSIVEPGFFQTPITNPESLDNIIKTRWARLPPATQALYGEAYLTKYLRLQHHFMNLLSDLDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVFTWILPKPAQAVY", "length": 429, "header": "tr|F1SPK7-1|F1SPK7_PIG Isoform 1 of Retinol dehydrogenase 5 OS=Sus scrofa OX=9823 GN=RDH5 PE=1 SV=2 CANONICAL=F1SPK7-1" }, "isoforms": [ { "isoform_ac": "F1SPK7-1", "url": "https://www.uniprot.org/uniprotkb/F1SPK7/entry#F1SPK7-1", "sequence": { "sequence": "MIKAVVNPLPPQEKTTKEGARALLVCAKPWLQPSASGLPWLLPLAPPPPSPHKHLILLAPSSPPPRDFSLGCSSCGALGRLGAKFLKRSKRSFRGCSSCSPSAEEVAWAPAMWLPLLLGVLLWALLWLLRDRQSLPTSDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLHTTLLDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQQVLNVNTLGPIGVTLALLPLLRQARGRVVNVSSVLGRLAANGGGYCVSKFGVEAFSDSLRRDVAPFGIRVSIVEPGFFQTPITNPESLDNIIKTRWARLPPATQALYGEAYLTKYLRLQHHFMNLLSDLDLTKVSRCLEHALTARHPRTRYSPGWDAKLLWLPASYLPASLVDAVFTWILPKPAQAVY", "length": 429, "header": "tr|F1SPK7-1|F1SPK7_PIG Isoform 1 of Retinol dehydrogenase 5 OS=Sus scrofa OX=9823 GN=RDH5 PE=1 SV=2 CANONICAL=F1SPK7-1" }, "locus": { "chromosome": "5", "start_pos": 21170751, "end_pos": 21166709, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000384.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000384.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000378.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000378.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 232, "start_aa": "Thr", "end_pos": 232, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr232", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2453902", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2453902", "resource": "Reactome", "description": "The canonical retinoid cycle in rods (twilight vision)" }, { "id": "R-SSC-5365859", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5365859", "resource": "Reactome", "description": "RA biosynthesis pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "retinoid metabolic process", "id": "GO:0001523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001523", "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "pmid": "" }, { "name": "steroid metabolic process", "id": "GO:0008202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008202", "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "pmid": "" }, { "name": "all-trans-retinol dehydrogenase (NAD+) activity", "id": "GO:0004745", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004745", "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "pmid": "" }, { "name": "androsterone dehydrogenase [NAD(P)+] activity", "id": "GO:0047023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047023", "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "pmid": "" }, { "name": "androstan-3-alpha,17-beta-diol dehydrogenase (NAD+) activity", "id": "GO:0047044", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047044", "evidence": [ { "database": "UniProtKB", "id": "F1SPK7", "url": "https://www.uniprot.org/uniprotkb/F1SPK7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPK7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 429, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPK7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPK7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 232 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 271, "end_pos": 273 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPN2-1", "uniprot_ac": "F1SPN2", "uniprot_id": "F1SPN2_PIG", "mass": { "chemical_mass": 58817.0, "monoisotopic_mass": 58817.0 }, "refseq": { "ac": "XP_020947250", "name": "coiled-coil domain-containing protein 65", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947250" }, "gene_names": [ { "name": "CCDC65", "type": "recommended", "evidence": [ { "id": "F1SPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" } ] }, { "name": "CCDC65", "type": "synonym", "evidence": [ { "id": "XP_020947250", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947250" } ] } ], "protein_names": [ { "name": "Dynein regulatory complex subunit 2", "type": "recommended", "evidence": [ { "id": "F1SPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPN2/entry#names_and_taxonomy" } ] }, { "name": "Coiled-coil domain-containing protein 65", "type": "synonym", "evidence": [ { "id": "F1SPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPN2/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 65", "type": "synonym", "evidence": [ { "id": "XP_020947250", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947250" } ] } ], "function": [ { "annotation": "Component of the nexin-dynein regulatory complex (N-DRC), a key regulator of ciliary/flagellar motility which maintains the alignment and integrity of the distal axoneme and regulates microtubule sliding in motile axonemes. Plays a critical role in the assembly of N-DRC and also stabilizes the assembly of multiple inner dynein arms and radial spokes. Coassembles with DRC1 to form a central scaffold needed for assembly of the N-DRC and its attachment to the outer doublet microtubules.", "evidence": [ { "database": "UniProtKB", "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2#function" }, { "database": "UniProtKB", "id": "ARBA00045865", "url": "https://www.uniprot.org/uniprotkb/ARBA00045865#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC65", "url": "https://www.uniprot.org/uniprotkb/F1SPN2", "locus": { "chromosome": "5", "start_pos": 14959327, "end_pos": 14950492, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000179", "url": "https://www.ensembl.org/id/ENSSSCG00000000179" } ] } } ], "crossref": [ { "id": "F1SPN2", "url": "https://alphafold.ebi.ac.uk/entry/F1SPN2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000179", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000179", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525107", "url": "https://www.ncbi.nlm.nih.gov/gene/100525107", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039750", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039750", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525107", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525107", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WEYLDLF", "url": "https://omabrowser.org/oma/group/WEYLDLF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPN2", "url": "https://www.orthodb.org/?gene=F1SPN2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21625", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21625", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21625:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21625:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14772", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14772", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020947250", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947250", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPN2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPN2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKKGKKAKIPLSDEEQLLLFQQKLLAEEEMAKKKERLLNQFLKDKLAKEEHNSAMNLNKINTQWRTVLREVKTRELHKDIEILSQTFERVVDCKDSVIKSLAKDLSEAEEQYAHALRSHLHNIDQLLALQRCRLSLLEENYNMELESLTKEFETERKTIVDQHEKEIRYLQDVFMAMEQNYIDSEYESKLEFQSMWDDLKNKNLEEKHFLRLQLENAVEDLWRRFQDALKNYTDATEDRKIAFETLKVKDERSSKEIEAQMKKIQRLQDSIIILKGKIMVHSRESEEQNQDIRDDKELVLVQLQKLKAQRTQARGVSQENLVRLTLESNATLKALRRTVDKGEKILKLAEICRKFETEEEKVLPFYSSVLTPEEQEEIEKTDPEEFNEELAKAIVDYTGMENFWKRYNKVKLEQLSLQHRRTQLLKINEKLREMLRQYLDGISVSDEVLSQLNPLFIVNHRSNLPRPLSTPTAEPGDKKPPTTYNIIEAAHVISHIL", "length": 498, "header": "tr|F1SPN2-1|F1SPN2_PIG Isoform 1 of Dynein regulatory complex subunit 2 OS=Sus scrofa OX=9823 GN=CCDC65 PE=3 SV=3 CANONICAL=F1SPN2-1" }, "isoforms": [ { "isoform_ac": "F1SPN2-1", "url": "https://www.uniprot.org/uniprotkb/F1SPN2/entry#F1SPN2-1", "sequence": { "sequence": "MSKKGKKAKIPLSDEEQLLLFQQKLLAEEEMAKKKERLLNQFLKDKLAKEEHNSAMNLNKINTQWRTVLREVKTRELHKDIEILSQTFERVVDCKDSVIKSLAKDLSEAEEQYAHALRSHLHNIDQLLALQRCRLSLLEENYNMELESLTKEFETERKTIVDQHEKEIRYLQDVFMAMEQNYIDSEYESKLEFQSMWDDLKNKNLEEKHFLRLQLENAVEDLWRRFQDALKNYTDATEDRKIAFETLKVKDERSSKEIEAQMKKIQRLQDSIIILKGKIMVHSRESEEQNQDIRDDKELVLVQLQKLKAQRTQARGVSQENLVRLTLESNATLKALRRTVDKGEKILKLAEICRKFETEEEKVLPFYSSVLTPEEQEEIEKTDPEEFNEELAKAIVDYTGMENFWKRYNKVKLEQLSLQHRRTQLLKINEKLREMLRQYLDGISVSDEVLSQLNPLFIVNHRSNLPRPLSTPTAEPGDKKPPTTYNIIEAAHVISHIL", "length": 498, "header": "tr|F1SPN2-1|F1SPN2_PIG Isoform 1 of Dynein regulatory complex subunit 2 OS=Sus scrofa OX=9823 GN=CCDC65 PE=3 SV=3 CANONICAL=F1SPN2-1" }, "locus": { "chromosome": "5", "start_pos": 14958879, "end_pos": 14950708, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000188.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000188.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000186.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000186.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525107", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525107", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZIS3-1", "protein_name": "Dynein regulatory complex subunit 2", "gene_name": "CCDC65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPVKRQQRAAAPTSAEDGLLLLQGQALAEEEAAKRKREMLSRFLKDKLSQEQQSTALNLHKLHSQWRAVLREAKAQELQQDVAILSQTFARVMDSKDSVIESLVTDLEEAEVQHSRALSGHLQNVDRLLQLQRCRLRCMEEGYRAQLEELQEEFETERRSIVERHQRELRYLQDVAVAVEQNHAREEHEATLNFQSTRDEIKNKSLQEKQYTRLQLSGKLEGLWEQFHCAMQSYAEATERRKLSFEALKAKDEKSSREVEVQEKKLQKLQDAVLAAKARLAAHLRAGEEQNGRVREQKEAALGQLQQLKSEMSRARAKAHRSLAELTAQSGAALKALGKIVGKAERVLRLAELCRRMESEEEKVLPFYPSSLAEGERDDAERVLREAPTEPLARAVLDYVGLEGFWRRFNKAKLEEVAAGQQRAALTHSNRRLRALLRRYLDGLAANADALSEANALPDVSNGSRVPKACLQRSRDAPQPHDPPARRGAVGHAVGLRAEPQSREGP", "length": 506 }, "evidence": [ { "id": "F1SPN2", "url": "https://omabrowser.org/oma/group/F1SPN2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q2TA16-1", "protein_name": "Dynein regulatory complex subunit 2", "gene_name": "DRC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSKKGKKAKVPLSDEEQLLLFQQKLLAEEEMAKKKERLLNQFLKDKLAKEEHNSALNLNKINTQWRTVLREIKTRELHKDIEILSQTFERVVDCKDSVIKSLAKDLSEAEEQHAHALRSHLHSIDQLLALQRCRLNLLEENYNMELEALTKEFETERKTIIDQHEKEIHYLQDVFMAMEQNYIDSEYESKLEFQSMWDDLKNKNLEEKHFLRLQLENIVEDLWRRFQDALKNYTDATEDRKIAFETLKVKDEKSSREIEAQMKKIQKLQDSIIIFKGKILVHSRESEEQNQDIREDKELVLVQLRKLKAQRTQARGIAQENLVKLTLESSATLKALREIVDKGEKILKLAEICRKFETEEEKVLPFYSSVLTPKEQEEIETMDLEEFNEELGKVIMDYKGMENFWKRYNKVKLEQLSLRHRRAQLLEINEKLREMLRQYLDGISVSDEVLSQLNPLFIVNHRSNLPQLLPMPTAQPGDKKPPATYNIIEAAHVVSHTL", "length": 498 }, "evidence": [ { "id": "F1SPN2", "url": "https://omabrowser.org/oma/group/F1SPN2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5XIJ8-1", "protein_name": "Dynein regulatory complex subunit 2", "gene_name": "Drc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKKGKKPKLPLTDEEQLILFQQKLLADEEAAKKKERLLTQFLKDKLAKEEHNSSLNLNKINTQWRTVLREVKTRELHKDIEILSQIFERVVDCKDSVIKSLARDLTEAEEQYAHALRGHLHNVDQLLTLQRRRLSLLEENYNMELEVLTKEFETERKAILDHHDKEIHYLHDVFMAMEQNYVDSEYESKLEFQSMWDDLKNKNLEEKHFLRLQLENVVEDLWRRFQDALKNYTDATEDRKIAFETLKVKDEKSSKEIEVQMKKIQRLQEAISALKGKIVAHSREGEWQNQCIRNDKELVHVQLRKLKIQRTQARTESQENLVKLTLESNATLKALKKVVEKGEKILKLAEICRKFETEEEKVLPFYSSALTPEEQEEVEIQSQEEITEDLAKIMMDYLGMENFWKRYNKVKLEVLSLQHRRLQLLDISSKLREMLKQYLDGISVSDEVLSRLNPLFIVNHKSNLPQLPPSAAQPGGDRGPGGDRRLTYNVIEAAHIASHIL", "length": 502 }, "evidence": [ { "id": "F1SPN2", "url": "https://omabrowser.org/oma/group/F1SPN2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6DHI2-1", "protein_name": "Dynein regulatory complex subunit 2", "gene_name": "drc2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPKKAGKKAGGKLAGLTEEERLLYMQQKAQAEEEIAKRKEDMLTHFLKDKLQKEEKNTVLNLHKLRQQWRAVLTQTKIAELRNDMSVLSQTFERVLDYKDNIIRSLQVDLSERELQSELKRSSHLHNVDCLLEIHKSRLAQLEFNFKSSLVELSSEYNTEREQILSQHQQECVDLDNVMFSMEKHYSDLDGEAKRDYQSTRNQIKKRNFDDKQAVKEQMDGVVEKLWQDQQQVLNHYNESTRDKIITTDDLMNKDVQSAKEIDSLKKHIQKLQDSISTFRGQLSSGQTDKTAEQLRSERDELAQEVQHFRVQLNAAQAIRKKHITKLTVQSNDATKKLQEIVARGERLLRQCEMCCKLETEHEKVLPFYKSSLSEEEQKQEKAKAMESSNEKLTQLMHDYSPLAKFWQRYNKVELDCLCVKREKLLLLQENERLRLFLKQYLDEVSVSDESFRQQKLLVVSSPALQDTAATDRHQQKRHVVQEAACIVQKQL", "length": 492 }, "evidence": [ { "id": "F1SPN2", "url": "https://omabrowser.org/oma/group/F1SPN2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8IXS2-1", "protein_name": "Dynein regulatory complex subunit 2", "gene_name": "DRC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPKKEKMAKTPLSDEKQLLLFQQKLLAEEEMAKKKERLLSQFLKDKLAKEEHNSALNLNKINTQWRTVLREVKTRELHKDIEILSQTFERVVDCKDNVIKSLAKDLSEAEEQYAHALRSHLHNVDQLLALQRHRLSLLEESYNMELEALTKEFETERKTIIDQHEKEIHYLQDIFMAMEQNYIDSEYESKLEFQSMWNDLKNMNLEEKHFLRLHLENRVEDLWRKFQDVLKNYTDATEDRKAAFETLQVKDEKSSKEIEVQMKKIQKLQDAITISKGKIMIHSRESEDENRYIRNDKELVLVQLRKLKAQRTQARAASQKNLVRLTLESNATLKALRKIVDKGEKILKLAEICRKFETEEEKVLPFYSSVLTPKEQEGIQKNNLEELTEELTKVMVDYIGMENFWKRYNKVKLEQLSLQHRRAQLLDINGKLREMLKQYLDGISVSDEVLSQLNPLFIVNYQSNLLQPLSIRIAHPGDKQHPTT", "length": 484 }, "evidence": [ { "id": "F1SPN2", "url": "https://omabrowser.org/oma/group/F1SPN2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VHI7-1", "protein_name": "Dynein regulatory complex subunit 2", "gene_name": "Drc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSKKGKKPKLPKAPLSEEDQLLIFQQKMLADEEAAKKKERLLTQFLKDKLAKEEHNSALNLNKINTQWRTILREVKTRELHQDIEILSQTFERVVDCKDSVIKSLAKDLTEAEEQYAHALRSHLHNIDQLLTLQRRRLGLLEENYNMELEVLTKEFETERKLIIDHHEKEMHYLQDVFMAMEQNYIDSEYESKLEFQSMWDDLKNKNLEEKHFLRLQLENIVEDLWRRFQDALKNYTDATEDRKIAFEYLKVKDEKSSKEIETQMKKIQKLQETIGILKGKIVAHSREGEWQNQCIRNNKELVHVQLRKLKVQRTQARTLSQENLVKLTLESNATLKALKKVVEKGEKILKLAEICRKFETEEEKVLPFYSSVLTPEEQEEAKLQNPEDITEDLAKIMMDYAGMENFWKRYNKVKLEVLSLQHRRLQLLDISSKLREMLKQYLDGISVSDEVLSHLNPLFVVNHRSNLPQLPPPSAQPVYNVIEAAHIASHIL", "length": 493 }, "evidence": [ { "id": "F1SPN2", "url": "https://omabrowser.org/oma/group/F1SPN2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W212-1", "protein_name": "Dynein regulatory complex subunit 2", "gene_name": "CG13522", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGKKGKGKGNKLANMSEEERARYLQMRADMEEETRRRKMQLISMYMKNKLKREDAFGRLNMAKINQEWRSILRQVKIQELRREIVDVESFFQEALKRKDQVIHRLIAHIESTEDMYANLQQSHMENITRIVDTHRDRIEFFRTIYEDDKQAVLSQWEQDSAAFKEMHAQKQQQLECVFYQLEENTDGGIRDNHERFLDRCEDLKSGMQLQLEQITSRGEARLEKLWQEYQGVLAGYCQHIEGFYSEYVDLKQRDEEAALQISQQTHEIEHLVDQLTNLRLVSEEFYIKQQGQLEQRQAIKQQLTERLRELRTCVEQEVARDHQLFKLMSVESYHALEFLQETVAKGETLAQLSAVCAKMETQRERMFQLPEISKEIIEIRDIEDQGNGSLTDPATDLLKDEVAVVPQMESFWRRVNNVAVDVACLKQQKRRLEAENSQLKTQLQDYLVNLNIANGSNSHVHSYLARRPKSMSVDRVSRLQLQPKLVKSAQPTGRRPAAPTPPTFHLHPGRSRAPAFEANLSNVVLSRTLARGKMNLARME", "length": 540 }, "evidence": [ { "id": "F1SPN2", "url": "https://omabrowser.org/oma/group/F1SPN2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" } ], "pmid": "" }, { "name": "axonemal dynein complex", "id": "GO:0005858", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005858", "evidence": [ { "database": "UniProtKB", "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cilium-dependent cell motility", "id": "GO:0060285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060285", "evidence": [ { "database": "UniProtKB", "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" } ], "pmid": "" }, { "name": "axonemal dynein complex assembly", "id": "GO:0070286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070286", "evidence": [ { "database": "UniProtKB", "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" } ], "pmid": "" }, { "name": "regulation of cilium movement", "id": "GO:0003352", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003352", "evidence": [ { "database": "UniProtKB", "id": "F1SPN2", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" }, { "start_pos": 330, "end_pos": 332, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPN2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 498, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPN2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPN2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPN2" }, { "id": "PF14772", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14772" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dynein regulatory complex protein 1/2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 124, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 232, "end_pos": 234 }, { "start_pos": 330, "end_pos": 332 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPP8-1", "uniprot_ac": "F1SPP8", "uniprot_id": "F1SPP8_PIG", "mass": { "chemical_mass": 64538.0, "monoisotopic_mass": 64538.0 }, "refseq": {}, "gene_names": [ { "name": "CKAP4", "type": "recommended", "evidence": [ { "id": "F1SPP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPP8" } ] } ], "protein_names": [ { "name": "Cytoskeleton associated protein 4", "type": "synonym", "evidence": [ { "id": "F1SPP8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPP8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPP8", "url": "https://www.uniprot.org/uniprotkb/F1SPP8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CKAP4", "url": "https://www.uniprot.org/uniprotkb/F1SPP8", "locus": { "chromosome": "5", "start_pos": 14030039, "end_pos": 14021131, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000171", "url": "https://www.ensembl.org/id/ENSSSCG00000000171" } ] } } ], "crossref": [ { "id": "F1SPP8", "url": "https://alphafold.ebi.ac.uk/entry/F1SPP8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000171", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000171", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "GFSGWCV", "url": "https://omabrowser.org/oma/group/GFSGWCV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45161:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45161:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5683826", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5683826", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696264", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SPP8", "url": "https://www.uniprot.org/uniprotkb/F1SPP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SPP8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSAKQRGSKGGHGAASPSEKGAHPSGGADDVAKKPPPAPQQPAPPAPHPQQHPPQHPQNQAHGRGGHRGGKSSSAAAAAAAAAASSSASCSRRLGRALNFLFYLALVAAAAFSGWCVHHVLEEVQQVRRSHQDFSRQREELGQGLQGVEQKVQSLQATFGTFESIVRSSQHKQDLTEKAVKQGESEINRISEVLQKLQNEILKDLSDGIHVVKDARERDFTSLENTVEERLTELTKSINDNIAIFTEVQKRSQKEINDVKAKVASLEDSEGYKQDLKALKEVVKEIQISVKSKEKDIEALRSTVQTMESDVYTEVKELVSLKQEQQRFKEAADSEHLTLQALTEKILRAEESAARLPEEIQLEEELGQLKAAALRPEEDGVFRPSEAFETLQKESQGLDSRLQSVEDGVQAAQEAWARQSESLEALRAQSAEHAQRLAELRERLAGLGPAPDAADGGLAGAVRGLGESQVSLSSDVDELKRRVAELPGAVEALQKVQEQVRTLLDRDAATAAPPQDLLDRLSSLDNLRASVGQVESDLKMLRTAVDSLVAYSVKIETNENNLESAKGLLEDLRNDLDRLFVKVEKIHEKV", "length": 591, "header": "tr|F1SPP8-1|F1SPP8_PIG Isoform 1 of Cytoskeleton associated protein 4 OS=Sus scrofa OX=9823 GN=CKAP4 PE=1 SV=3 CANONICAL=F1SPP8-1" }, "isoforms": [ { "isoform_ac": "F1SPP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SPP8/entry#F1SPP8-1", "sequence": { "sequence": "MPSAKQRGSKGGHGAASPSEKGAHPSGGADDVAKKPPPAPQQPAPPAPHPQQHPPQHPQNQAHGRGGHRGGKSSSAAAAAAAAAASSSASCSRRLGRALNFLFYLALVAAAAFSGWCVHHVLEEVQQVRRSHQDFSRQREELGQGLQGVEQKVQSLQATFGTFESIVRSSQHKQDLTEKAVKQGESEINRISEVLQKLQNEILKDLSDGIHVVKDARERDFTSLENTVEERLTELTKSINDNIAIFTEVQKRSQKEINDVKAKVASLEDSEGYKQDLKALKEVVKEIQISVKSKEKDIEALRSTVQTMESDVYTEVKELVSLKQEQQRFKEAADSEHLTLQALTEKILRAEESAARLPEEIQLEEELGQLKAAALRPEEDGVFRPSEAFETLQKESQGLDSRLQSVEDGVQAAQEAWARQSESLEALRAQSAEHAQRLAELRERLAGLGPAPDAADGGLAGAVRGLGESQVSLSSDVDELKRRVAELPGAVEALQKVQEQVRTLLDRDAATAAPPQDLLDRLSSLDNLRASVGQVESDLKMLRTAVDSLVAYSVKIETNENNLESAKGLLEDLRNDLDRLFVKVEKIHEKV", "length": 591, "header": "tr|F1SPP8-1|F1SPP8_PIG Isoform 1 of Cytoskeleton associated protein 4 OS=Sus scrofa OX=9823 GN=CKAP4 PE=1 SV=3 CANONICAL=F1SPP8-1" }, "locus": { "chromosome": "5", "start_pos": 14030036, "end_pos": 14021321, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000180.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000180.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000178.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000178.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPP8", "url": "https://www.uniprot.org/uniprotkb/F1SPP8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-5683826", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5683826", "resource": "Reactome", "description": "Surfactant metabolism" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" }, { "id": "R-SSC-9696264", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "resource": "Reactome", "description": "RND3 GTPase cycle" }, { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZH41-1", "protein_name": "Cytoskeleton-associated protein 4", "gene_name": "Ckap4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPSAKQRGSKGGHGAASPSDKGAHPSGGADDVAKKPPPAPQQPQPPAPHPPQHPQNQAHRGGHRGRSSTAAAAASSASCSRRLGRLLNFLFYLSLVAAAAFSGWYVHHVLEEVQQVRRGHQDFSRQRDELGQGLQGVEQKVQSLQAAVGTFESILRSSQHKQDLTEKAVKEGESEINRISEVLQKLQNEILKDLSDGIHVVKDARERDFTSLENTVEERLTELTKSINDNIAIFTDVQKRSQKEINEVKMKVASLEESKGDRSQDVKVLKEAVKEVQASMKSRERDIEALKSSLQTMESDVYTEVRELVSLKQEQQAFKQAADSERLALQALTEKLLQSEESSSRLPEDIRRLEEELQQLKVGAHGSEEAVVFRDSKAFDELQKQMEGLGARLQYVEDGVYSMQVASASHTESLESLLSKSQEYEQRLAMLQEHVESLGPISDLASTVRSLEETQLALSSDLKGLKQGLGELPGTVESLQEQVHLLLSQDPAQAAGLPPQDFLDRLSSLDNLKSSVSQVESDLKMLRTAVDSLVAYSVKIETNENSLESAKGLLDDLRNDLDRLFVKVEKIHEKI", "length": 575 }, "evidence": [ { "id": "F1SPP8", "url": "https://omabrowser.org/oma/group/F1SPP8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1ME65-1", "protein_name": "Cytoskeleton associated protein 4", "gene_name": "CKAP4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPSAKQRGSKGGHGAASPSEKGAHPSGGADDVAKKPPPAPQQHPPPPAPHPQQQHPPQHPQNQAHGKGGHRGGKSSSSAAAAAASSSASCSRRLGRVLNFLFYLALVAAAAFSGWCVHHVLEEVQHVRRSHQDFSRQREELGQGLQGVEQKVQSLQATFGTFESLVRSSQHKHDLTEKAVKQGESEINRISEVLQKLQNEILKDLSDGIHVVKDARERDFTSLENTVEERLTELTKSINDNIAIFTDVQKRSQKEINDVKAKVASLEDSEGYKQDLKALKEVVKEIQTSVKSKEKDMEALRSTIQTMESDVYTEVKELVSLKQEQQRFKEAADSEHHTLQALTEKILRAEESAAHLPEEIRRLEEELGQLKAAALRPEEDGAFRPSEAFETLQKESQGLDSRLQSVEDGVQAARAASARQGESLEALRAQSEEQARRLAELQERVAGLGPDADAEGGLAGTVRGLGEAQLSLAGDVDELKRRVAELPGAVEALQKVQEQVHTLLGREATAVPPQDLLDRLSSLDNLRASVGQVESDLKMLRTAVDSLVAYSVKIETNENNLESAKGLLEDLRNDLDRLFVKVEKIHEKV", "length": 589 }, "evidence": [ { "id": "F1SPP8", "url": "https://omabrowser.org/oma/group/F1SPP8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q07065-1", "protein_name": "Cytoskeleton-associated protein 4", "gene_name": "CKAP4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPSAKQRGSKGGHGAASPSEKGAHPSGGADDVAKKPPPAPQQPPPPPAPHPQQHPQQHPQNQAHGKGGHRGGGGGGGKSSSSSSASAAAAAAAASSSASCSRRLGRALNFLFYLALVAAAAFSGWCVHHVLEEVQQVRRSHQDFSRQREELGQGLQGVEQKVQSLQATFGTFESILRSSQHKQDLTEKAVKQGESEVSRISEVLQKLQNEILKDLSDGIHVVKDARERDFTSLENTVEERLTELTKSINDNIAIFTEVQKRSQKEINDMKAKVASLEESEGNKQDLKALKEAVKEIQTSAKSREWDMEALRSTLQTMESDIYTEVRELVSLKQEQQAFKEAADTERLALQALTEKLLRSEESVSRLPEEIRRLEEELRQLKSDSHGPKEDGGFRHSEAFEALQQKSQGLDSRLQHVEDGVLSMQVASARQTESLESLLSKSQEHEQRLAALQGRLEGLGSSEADQDGLASTVRSLGETQLVLYGDVEELKRSVGELPSTVESLQKVQEQVHTLLSQDQAQAARLPPQDFLDRLSSLDNLKASVSQVEADLKMLRTAVDSLVAYSVKIETNENNLESAKGLLDDLRNDLDRLFVKVEKIHEKV", "length": 602 }, "evidence": [ { "id": "F1SPP8", "url": "https://omabrowser.org/oma/group/F1SPP8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BMK4-1", "protein_name": "Cytoskeleton-associated protein 4", "gene_name": "Ckap4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPSAKQRGSKGGHGAASPSDKGAHPSGGADDVAKKPPAAPQQPQPPAPHPPQHPQNQAHRGGHRGRSSAATANASSASCSRRLGRVLNFLFYLSLVAAAAFSGWYVHHVLEEVQQVRRGHQDFSRQRDELGQGLQGVEQKVQSLQATFGTFESLLRNSQHKQDLTEKAVKEGESELNRISEVLQKLQNEILKDLSDGIHVVKDARERDFTSLENTVEERLTELTKSINDNIAIFTDVQKRSQKEINEVKMKVASLEESKGDRSQDVKTLKDAVKEVQASMMSRERDIEALKSSLQTMESDVYTEVRELVSLKQEQQAFKQAADSERLALQALTEKLLRSEESSSRLPEDIRRLEEELQQLKVGAHGSEEGAVFKDSKALEELQRQIEGLGARLQYVEDGVYSMQVASARHTESLESLLSKSQEYEQRLAMLQEHVGNLGSSSDLASTVRSLGETQLALSSDLKELKQSLGELPGTVESLQEQVLSLLSQDQAQAEGLPPQDFLDRLSSLDNLKSSVSQVESDLKMLRTAVDSLVAYSVKIETNENNLESAKGLLDDLRNDLDRLFLKVEKIHEKI", "length": 575 }, "evidence": [ { "id": "F1SPP8", "url": "https://omabrowser.org/oma/group/F1SPP8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "rough endoplasmic reticulum", "id": "GO:0005791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005791", "evidence": [ { "database": "UniProtKB", "id": "F1SPP8", "url": "https://www.uniprot.org/uniprotkb/F1SPP8" } ], "pmid": "" }, { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "F1SPP8", "url": "https://www.uniprot.org/uniprotkb/F1SPP8" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SPP8", "url": "https://www.uniprot.org/uniprotkb/F1SPP8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPP8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 591, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPP8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPP8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPR0-1", "uniprot_ac": "F1SPR0", "uniprot_id": "F1SPR0_PIG", "mass": { "chemical_mass": 112091.0, "monoisotopic_mass": 112091.0 }, "refseq": {}, "gene_names": [ { "name": "UBA7", "type": "recommended", "evidence": [ { "id": "F1SPR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ] } ], "protein_names": [ { "name": "Ubiquitin-like modifier-activating enzyme 7", "type": "recommended", "evidence": [ { "id": "F1SPR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR0/entry#names_and_taxonomy" } ] }, { "name": "6.2.1.45", "type": "synonym", "evidence": [ { "id": "F1SPR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR0/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin-activating enzyme E1 homolog", "type": "synonym", "evidence": [ { "id": "F1SPR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBA7", "url": "https://www.uniprot.org/uniprotkb/F1SPR0", "locus": { "chromosome": "13", "start_pos": 32332367, "end_pos": 32341217, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011393", "url": "https://www.ensembl.org/id/ENSSSCG00000011393" } ] } } ], "crossref": [ { "id": "F1SPR0", "url": "https://alphafold.ebi.ac.uk/entry/F1SPR0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011393", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011393", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01491", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01491", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019572", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019572", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032418", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032418", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032420", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032420", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035985", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035985", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10953", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10953", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10953:SF143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10953:SF143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00899", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00899", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16190", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16190", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5656169", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656169", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-936440", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-936440", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9909505", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909505", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPR0-1", "url": "https://www.uniprot.org/uniprotkb/F1SPR0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVQETSKLLDEELYSRQLYVLGLPAMERIQGAKVLLSGLQGLGAEIAKNLVLMGIGSLTLHDPHPTCWSDLAAQFFLSEQDLGRSRAEASQELLAKLNGAVQVCIHKGDITEDLLLHFQVVVLTALKLEEQLKVGSFCHKHGICFLVADTRGLVQLFCDFGENFTVQEPTEAEPLTAAIQHISQGSPGILTLREQADAHHFHNGDLVTFSGIEGMVELNNCAPWPLRVREDGTLEIEDTSTFSRYLRGGVITEVKKSKTVSHEPLDVALLQPRVVAQSSQEVHRAHCLHQAFRALHKFQELSGRRPQPWDPVDTEMVVDLARALEPLKGTEGEPLEEQLDEALVRTVALSSAGSLSPMAAMLGAVAAQEVLKAISRKFMPLDQWLYFDALDCLPEDGESFPNPEDYAPRGCRYDGQIAVFGAHFQERLSHQHYLLVGAGAIGCELLKGFALVGLGAGGSGGVTVADMDHVERSNLSRQFLFRPQDIGRLKAEVAAEAAHRLNSDLLVTPLPYQLDPTTEHIYGDNFFSSVDGVAAALDSFQARRYVAARCTHYLKPLLEAGTKGTWGSACVFVPHLTEGYRAPASAAASEDTSYPICTVRHFPSTAEHTLQWARDEFEGLFRLFAETINRHQQALTPPADLDGPQMLNLLQVVLGVLRERPQTWRDCVVWALGHWQLRFHYGIEQLLRHFPPDKVLEDGTPFWSGPKQCPQPLEFDASQDMHLLFVLAAANLYAQMHGLPGSQDQTALKDLLQLLPLPDPQYLAPIFASDLELTLASAEFGPERLKKLHEALETWRMGAPLKPLMFEKDDDSNFHVDFVVAAASLRAQNYGIPPANRAKSKQIVGRIIPAIATTTAAVAGLVCLELYKVVGGPRPLTAFRHSYLHLAENYFSRWVPSAPAIQKFHDLKWTCWDRLEVPAGQPMRTLESLLAHLQELHELRVRMLLHGPALLYSAGWSPEKRAHHLSLRVTDLVQQVTGRAPEPGQRVLVLELSFEGEEEDTAFPPLHYEL", "length": 1011, "header": "tr|F1SPR0-1|F1SPR0_PIG Isoform 1 of Ubiquitin-like modifier-activating enzyme 7 OS=Sus scrofa OX=9823 GN=UBA7 PE=3 SV=4 CANONICAL=F1SPR0-1" }, "isoforms": [ { "isoform_ac": "F1SPR0-1", "url": "https://www.uniprot.org/uniprotkb/F1SPR0/entry#F1SPR0-1", "sequence": { "sequence": "MDVQETSKLLDEELYSRQLYVLGLPAMERIQGAKVLLSGLQGLGAEIAKNLVLMGIGSLTLHDPHPTCWSDLAAQFFLSEQDLGRSRAEASQELLAKLNGAVQVCIHKGDITEDLLLHFQVVVLTALKLEEQLKVGSFCHKHGICFLVADTRGLVQLFCDFGENFTVQEPTEAEPLTAAIQHISQGSPGILTLREQADAHHFHNGDLVTFSGIEGMVELNNCAPWPLRVREDGTLEIEDTSTFSRYLRGGVITEVKKSKTVSHEPLDVALLQPRVVAQSSQEVHRAHCLHQAFRALHKFQELSGRRPQPWDPVDTEMVVDLARALEPLKGTEGEPLEEQLDEALVRTVALSSAGSLSPMAAMLGAVAAQEVLKAISRKFMPLDQWLYFDALDCLPEDGESFPNPEDYAPRGCRYDGQIAVFGAHFQERLSHQHYLLVGAGAIGCELLKGFALVGLGAGGSGGVTVADMDHVERSNLSRQFLFRPQDIGRLKAEVAAEAAHRLNSDLLVTPLPYQLDPTTEHIYGDNFFSSVDGVAAALDSFQARRYVAARCTHYLKPLLEAGTKGTWGSACVFVPHLTEGYRAPASAAASEDTSYPICTVRHFPSTAEHTLQWARDEFEGLFRLFAETINRHQQALTPPADLDGPQMLNLLQVVLGVLRERPQTWRDCVVWALGHWQLRFHYGIEQLLRHFPPDKVLEDGTPFWSGPKQCPQPLEFDASQDMHLLFVLAAANLYAQMHGLPGSQDQTALKDLLQLLPLPDPQYLAPIFASDLELTLASAEFGPERLKKLHEALETWRMGAPLKPLMFEKDDDSNFHVDFVVAAASLRAQNYGIPPANRAKSKQIVGRIIPAIATTTAAVAGLVCLELYKVVGGPRPLTAFRHSYLHLAENYFSRWVPSAPAIQKFHDLKWTCWDRLEVPAGQPMRTLESLLAHLQELHELRVRMLLHGPALLYSAGWSPEKRAHHLSLRVTDLVQQVTGRAPEPGQRVLVLELSFEGEEEDTAFPPLHYEL", "length": 1011, "header": "tr|F1SPR0-1|F1SPR0_PIG Isoform 1 of Ubiquitin-like modifier-activating enzyme 7 OS=Sus scrofa OX=9823 GN=UBA7 PE=3 SV=4 CANONICAL=F1SPR0-1" }, "locus": { "chromosome": "13", "start_pos": 32341145, "end_pos": 32332424, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012471.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012471.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012146.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012146.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1169408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169408", "resource": "Reactome", "description": "ISG15 antiviral mechanism" }, { "id": "R-SSC-5656169", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656169", "resource": "Reactome", "description": "Termination of translesion DNA synthesis" }, { "id": "R-SSC-936440", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-936440", "resource": "Reactome", "description": "Negative regulators of DDX58/IFIH1 signaling" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" }, { "id": "R-SSC-9909505", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909505", "resource": "Reactome", "description": "Modulation of host responses by IFN-stimulated genes" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "pmid": "" }, { "name": "ubiquitin activating enzyme activity", "id": "GO:0004839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004839", "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "pmid": "" }, { "name": "ISG15 activating enzyme activity", "id": "GO:0019782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019782", "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "pmid": "" }, { "name": "ISG15-protein conjugation", "id": "GO:0032020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032020", "evidence": [ { "database": "UniProtKB", "id": "F1SPR0", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1169397", "name": "Activation of ISG15 by UBA7 E1 enzyme", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-936550", "R-SSC-936552" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1169397", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169397" } ] }, { "id": "R-SSC-1169404", "name": "Transfer of ISG15 from E1 to E2 (UBCH8)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1169404", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169404" } ] }, { "id": "R-SSC-5653754", "name": "UBE2L6:TRIM25 ISGylates monoUb:K164-PCNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5653754", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5653754" } ] }, { "id": "R-SSC-936563", "name": "ISGylation of DDX58", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-936563", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-936563" } ] }, { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983152", "name": "Transfer of ubiquitin from E1 to E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983152", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983152" } ] }, { "id": "R-SSC-983153", "name": "E1 mediated ubiquitin activation", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-29926" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983153", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983153" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] }, { "id": "R-SSC-9927247", "name": "ISGylation of DDX58 (RIG-I)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-168917" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9927247", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9927247" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-29926", "participant_name": "Mg2+ [cytosol]", "crossref": [ { "id": "18420", "database": "ChEBI", "url": "" }, { "id": "C00305", "database": "COMPOUND", "url": "" }, { "id": "11533268", "database": "PubChem Substance", "url": "" }, { "id": "HMDB0000547", "database": "HMDB Metabolite", "url": "" } ] }, { "participant_id": "R-SSC-168917", "participant_name": "DDX58 [cytosol]", "crossref": [ { "id": "A0A287AMJ0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000030408", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000045260", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000058360", "database": "ENSEMBL", "url": "" }, { "id": "95905", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-936550", "participant_name": "UBA7 [cytosol]", "crossref": [ { "id": "F1SPR0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000011393", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000012146", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000012471", "database": "ENSEMBL", "url": "" }, { "id": "94631", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-936552", "participant_name": "ISG15 [cytosol]", "crossref": [ { "id": "A0A287AB58", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000040575", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000041015", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000046783", "database": "ENSEMBL", "url": "" }, { "id": "NP_001121941.2", "database": "RefSeq", "url": "" }, { "id": "89223", "database": "VGNC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPR0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1011, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPR0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPR0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPR0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR0" }, { "id": "SM00985", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00985" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-activating enzyme E1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 880, "end_pos": 1007, "start_aa": "Phe", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 475, "end_pos": 477 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPR5-1", "uniprot_ac": "F1SPR5", "uniprot_id": "F1SPR5_PIG", "mass": { "chemical_mass": 55692.0, "monoisotopic_mass": 55692.0 }, "refseq": {}, "gene_names": [ { "name": "AMIGO3", "type": "recommended", "evidence": [ { "id": "F1SPR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR5" } ] } ], "protein_names": [ { "name": "Amphoterin-induced protein 3", "type": "recommended", "evidence": [ { "id": "F1SPR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR5/entry#names_and_taxonomy" } ] }, { "name": "AMIGO-3", "type": "synonym", "evidence": [ { "id": "F1SPR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR5/entry#names_and_taxonomy" } ] }, { "name": "Alivin-3", "type": "synonym", "evidence": [ { "id": "F1SPR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May mediate heterophilic cell-cell interaction. May contribute to signal transduction through its intracellular domain.", "evidence": [ { "database": "UniProtKB", "id": "F1SPR5", "url": "https://www.uniprot.org/uniprotkb/F1SPR5#function" }, { "database": "UniProtKB", "id": "ARBA00057334", "url": "https://www.uniprot.org/uniprotkb/ARBA00057334#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPR5", "url": "https://www.uniprot.org/uniprotkb/F1SPR5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AMIGO3", "url": "https://www.uniprot.org/uniprotkb/F1SPR5", "locus": { "chromosome": "13", "start_pos": 32246466, "end_pos": 32249619, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011389", "url": "https://www.ensembl.org/id/ENSSSCG00000011389" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011389", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011389", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24368", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24368", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24368:SF62", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24368:SF62", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SPR5", "url": "https://www.uniprot.org/uniprotkb/F1SPR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPR5-1", "url": "https://www.uniprot.org/uniprotkb/F1SPR5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARLLLQGTLLCMLRIGLGTLDSEGFLPPAPHNCPYKCVCAADLLSCAGLGLQDVPVALPAAAADLDLSHNALQRLHPGWLAPLARLRALRLNHNELEVLGRGVFTNASSLRLLDLSSNALRALGRNDLDGLGALEMLFLFNNRLVHLDEHAFRGLDTLSRLYLGCNELTSFSFHHLHGLEVTHLRTLDLSSNRLGHIPVPDLAALPAFLKNGLYLHNNPLPCDCRLYHLLQRWRQRGLSAVSDFTREYMCLAFKVPASRVRFFEHSRVFENCSAALAGGIERPEEQLHVQVGQSLKLHCNTSAPAGRIAWVSPQHELLVAPGSRNGSIAVLADGSLAISNVQLWHEGVFVCLATGPHLHHNQTHEYNVSVHFPHPEPEAFNTGFTTLLGCAVGLGLVLLYLFAPPCPGCRRCYHRTCRCRRWPRTPSPLQDLSAQSSVLSTTPPDAPSHKASVHKHVVFLEPGRRGLNGRVQLAIAEDFDLYNPMGLRLKVGSESTSSTGSEGLVMT", "length": 508, "header": "tr|F1SPR5-1|F1SPR5_PIG Isoform 1 of Amphoterin-induced protein 3 OS=Sus scrofa OX=9823 GN=AMIGO3 PE=3 SV=3 CANONICAL=F1SPR5-1" }, "isoforms": [ { "isoform_ac": "F1SPR5-1", "url": "https://www.uniprot.org/uniprotkb/F1SPR5/entry#F1SPR5-1", "sequence": { "sequence": "MARLLLQGTLLCMLRIGLGTLDSEGFLPPAPHNCPYKCVCAADLLSCAGLGLQDVPVALPAAAADLDLSHNALQRLHPGWLAPLARLRALRLNHNELEVLGRGVFTNASSLRLLDLSSNALRALGRNDLDGLGALEMLFLFNNRLVHLDEHAFRGLDTLSRLYLGCNELTSFSFHHLHGLEVTHLRTLDLSSNRLGHIPVPDLAALPAFLKNGLYLHNNPLPCDCRLYHLLQRWRQRGLSAVSDFTREYMCLAFKVPASRVRFFEHSRVFENCSAALAGGIERPEEQLHVQVGQSLKLHCNTSAPAGRIAWVSPQHELLVAPGSRNGSIAVLADGSLAISNVQLWHEGVFVCLATGPHLHHNQTHEYNVSVHFPHPEPEAFNTGFTTLLGCAVGLGLVLLYLFAPPCPGCRRCYHRTCRCRRWPRTPSPLQDLSAQSSVLSTTPPDAPSHKASVHKHVVFLEPGRRGLNGRVQLAIAEDFDLYNPMGLRLKVGSESTSSTGSEGLVMT", "length": 508, "header": "tr|F1SPR5-1|F1SPR5_PIG Isoform 1 of Amphoterin-induced protein 3 OS=Sus scrofa OX=9823 GN=AMIGO3 PE=3 SV=3 CANONICAL=F1SPR5-1" }, "locus": { "chromosome": "13", "start_pos": 32248986, "end_pos": 32247463, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039517.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039517.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058925.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058925.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPR5", "url": "https://www.uniprot.org/uniprotkb/F1SPR5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SPR5", "url": "https://www.uniprot.org/uniprotkb/F1SPR5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "F1SPR5", "url": "https://www.uniprot.org/uniprotkb/F1SPR5" } ], "pmid": "" }, { "name": "positive regulation of synapse assembly", "id": "GO:0051965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051965", "evidence": [ { "database": "UniProtKB", "id": "F1SPR5", "url": "https://www.uniprot.org/uniprotkb/F1SPR5" } ], "pmid": "" }, { "name": "heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules", "id": "GO:0007157", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007157", "evidence": [ { "database": "UniProtKB", "id": "F1SPR5", "url": "https://www.uniprot.org/uniprotkb/F1SPR5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 326, "end_pos": 328, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPR5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR5" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 257, "end_pos": 370, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 272, "end_pos": 274 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 326, "end_pos": 328 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 368, "end_pos": 370 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPR8-1", "uniprot_ac": "F1SPR8", "uniprot_id": "F1SPR8_PIG", "mass": { "chemical_mass": 55822.0, "monoisotopic_mass": 55822.0 }, "refseq": {}, "gene_names": [ { "name": "PWP1", "type": "recommended", "evidence": [ { "id": "F1SPR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ] } ], "protein_names": [ { "name": "Periodic tryptophan protein 1 homolog", "type": "recommended", "evidence": [ { "id": "F1SPR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPR8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Chromatin-associated factor that regulates transcription. Regulates Pol I-mediated rRNA biogenesis and, probably, Pol III-mediated transcription. Regulates the epigenetic status of rDNA.", "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8#function" }, { "database": "UniProtKB", "id": "ARBA00059325", "url": "https://www.uniprot.org/uniprotkb/ARBA00059325#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PWP1", "url": "https://www.uniprot.org/uniprotkb/F1SPR8", "locus": { "chromosome": "5", "start_pos": 12701589, "end_pos": 12730849, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000161", "url": "https://www.ensembl.org/id/ENSSSCG00000000161" } ] } } ], "crossref": [ { "id": "F1SPR8", "url": "https://alphafold.ebi.ac.uk/entry/F1SPR8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000161", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000161", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044285", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044285", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14091", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14091", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14091:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14091:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPR8-1", "url": "https://www.uniprot.org/uniprotkb/F1SPR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQEEGGSDEEETGDPSEDGMQSARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDTETLGESLLGLTVYGSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHDILLAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKDASADGHTDAILDLSWNKLVRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPDESHRMWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFGGQKEGLRVWDISTVASVNEAFGRRERLVLGNTRNSSISGPFGNRSSETPMES", "length": 499, "header": "tr|F1SPR8-1|F1SPR8_PIG Isoform 1 of Periodic tryptophan protein 1 homolog OS=Sus scrofa OX=9823 GN=PWP1 PE=3 SV=3 CANONICAL=F1SPR8-1" }, "isoforms": [ { "isoform_ac": "F1SPR8-1", "url": "https://www.uniprot.org/uniprotkb/F1SPR8/entry#F1SPR8-1", "sequence": { "sequence": "MNRSRQVTCVAWVRCGVAKETPDKVELSKEEVKRLIAEAKEKLQEEGGSDEEETGDPSEDGMQSARTQARPREPLEDGDPEDDRTLDDDELAEYDLDKYDEEGDPDTETLGESLLGLTVYGSNDQDPYVTLKDTEQYEREDFLIKPSDNLIVCGRAEQDQCNLEVHVYNQEEDSFYVHHDILLAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVDSLEPVFTLGSKLSKKKKKKGKKDASADGHTDAILDLSWNKLVRNVLASASADNTVILWDMSLGKPAASLAVHTDKVQTLQFHPFEAQTLISGSYDKSVALYDCRSPDESHRMWRFSGQIERVTWNHFSPCHFLASTDDGFVYNLDARSDKPIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVKIWDILGDRPSLVHSRDMKMGVLFCSSCCPDLPFIYAFGGQKEGLRVWDISTVASVNEAFGRRERLVLGNTRNSSISGPFGNRSSETPMES", "length": 499, "header": "tr|F1SPR8-1|F1SPR8_PIG Isoform 1 of Periodic tryptophan protein 1 homolog OS=Sus scrofa OX=9823 GN=PWP1 PE=3 SV=3 CANONICAL=F1SPR8-1" }, "locus": { "chromosome": "5", "start_pos": 12730726, "end_pos": 12703307, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000170.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000170.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000168.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000168.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ], "pmid": "" }, { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ], "pmid": "" }, { "name": "positive regulation of transcription of nucleolar large rRNA by RNA polymerase I", "id": "GO:1901838", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901838", "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone H4K20me3 reader activity", "id": "GO:1990889", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990889", "evidence": [ { "database": "UniProtKB", "id": "F1SPR8", "url": "https://www.uniprot.org/uniprotkb/F1SPR8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2, "end_pos": 4, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 490, "end_pos": 492, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPR8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 499, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPR8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPR8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 210, "end_pos": 212 }, { "start_pos": 2, "end_pos": 4 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 490, "end_pos": 492 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPZ6-1", "uniprot_ac": "F1SPZ6", "uniprot_id": "F1SPZ6_PIG", "mass": { "chemical_mass": 53458.0, "monoisotopic_mass": 53458.0 }, "refseq": { "ac": "XP_020948433", "name": "POC1 centriolar protein homolog B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948433" }, "gene_names": [ { "name": "POC1B", "type": "recommended", "evidence": [ { "id": "F1SPZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ] }, { "name": "POC1B", "type": "synonym", "evidence": [ { "id": "XP_020948433", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948433" } ] } ], "protein_names": [ { "name": "POC1 centriolar protein homolog B", "type": "recommended", "evidence": [ { "id": "F1SPZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6/entry#names_and_taxonomy" } ] }, { "name": "POC1 centriolar protein homolog B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020948433", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948433" } ] }, { "name": "WD repeat-containing protein 51B", "type": "synonym", "evidence": [ { "id": "F1SPZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays an important role in centriole assembly and/or stability and ciliogenesis. Involved in early steps of centriole duplication, as well as in the later steps of centriole length control. Acts in concert with POC1A to ensure centriole integrity and proper mitotic spindle formation. Required for primary cilia formation, ciliary length and also cell proliferation. Required for retinal integrity. Acts as a positive regulator of centriole elongation.", "evidence": [ { "database": "UniProtKB", "id": "I3LRF4", "url": "https://www.uniprot.org/uniprotkb/I3LRF4#function" }, { "database": "UniProtKB", "id": "ARBA00059354", "url": "https://www.uniprot.org/uniprotkb/ARBA00059354#function" }, { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POC1B", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6", "locus": { "chromosome": "5", "start_pos": 93222522, "end_pos": 93132018, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000920", "url": "https://www.ensembl.org/id/ENSSSCG00000000920" } ] } } ], "crossref": [ { "id": "F1SPZ6", "url": "https://alphafold.ebi.ac.uk/entry/F1SPZ6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000920", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000920", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102161501", "url": "https://www.ncbi.nlm.nih.gov/gene/102161501", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050505", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050505", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102161501", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102161501", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MIKFHPK", "url": "https://omabrowser.org/oma/group/MIKFHPK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPZ6", "url": "https://www.orthodb.org/?gene=F1SPZ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44019", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44019", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44019:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44019:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948433", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948433", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRF4", "url": "https://www.uniprot.org/uniprotkb/I3LRF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LRF4-1", "url": "https://www.uniprot.org/uniprotkb/I3LRF4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASAPEDPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSFKPQARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMHRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADAQVLLWRTNFDELNCKDVIKRNLKRLHFDSPPHLLDIYPRTPHPHEGKTETVQINPKLDVIDLQTSAPPVVDILSFDSTTATETTVRTLPDKSEETCGCFLNPSLMSSECSPAASKKRTEDMSDLPSESQRSIPLAVTDALEHIMEQLNVLTQTVSILEQRLTLTEDKLKDCLENQQRLFSAIQPQS", "length": 478, "header": "tr|F1SPZ6-1|F1SPZ6_PIG Isoform 1 of POC1 centriolar protein homolog B OS=Sus scrofa OX=9823 GN=POC1B PE=3 SV=3 CANONICAL=F1SPZ6-1" }, "isoforms": [ { "isoform_ac": "F1SPZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6/entry#F1SPZ6-1", "sequence": { "sequence": "MASAPEDPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSFKPQARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMHRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADAQVLLWRTNFDELNCKDVIKRNLKRLHFDSPPHLLDIYPRTPHPHEGKTETVQINPKLDVIDLQTSAPPVVDILSFDSTTATETTVRTLPDKSEETCGCFLNPSLMSSECSPAASKKRTEDMSDLPSESQRSIPLAVTDALEHIMEQLNVLTQTVSILEQRLTLTEDKLKDCLENQQRLFSAIQPQS", "length": 478, "header": "tr|F1SPZ6-1|F1SPZ6_PIG Isoform 1 of POC1 centriolar protein homolog B OS=Sus scrofa OX=9823 GN=POC1B PE=3 SV=3 CANONICAL=F1SPZ6-1" }, "locus": { "chromosome": "5", "start_pos": 93221081, "end_pos": 93132236, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001004.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001004.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000982.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000982.3" } ] } }, { "isoform_ac": "I3LRF4-1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6/entry#I3LRF4-1", "sequence": { "sequence": "MASAPEDPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSFKPQARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMHRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADAQVLLWRTNFDELNCKDVIKRNLKRLHFDSPPHLLDIYPRTPHPHEGKTETVQATETTVRTLPDKSEETCGCFLNPSLMSSECSPAASKKRTEDMSDLPSESQRSIPLAVTDALEHIMEQLNVLTQTVSILEQRLTLTEDKLKDCLENQQRLFSAIQPQS", "length": 451, "header": "tr|I3LRF4-1|F1SPZ6_PIG Computationally mapped isoform of POC1 centriolar protein homolog B OS=Sus scrofa OX=9823 GN=POC1B PE=3 SV=2 CANONICAL=F1SPZ6-1" }, "locus": { "chromosome": "5", "start_pos": 93221081, "end_pos": 93132236, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029579.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029579.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026688.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026688.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LRF4", "url": "https://www.uniprot.org/uniprotkb/I3LRF4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102161501", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102161501", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZW91-1", "protein_name": "POC1 centriolar protein homolog B", "gene_name": "Poc1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASGPEDPILERYFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASASRDKTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQFLVTASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTSKQCVNNFSDSVGFANFVDFSPNGTCIASAGSDHAVRIWDIRMNRLLQHYQVHSCGVNCLSFHPSGNSLVTASSDGTVKILDLVEGRLIYTLQGHTGPVFTVSFSKDGELFTSGGADAQVLVWRTSFNQVHYRDPSKRNLKRLHLEASPHLLDIYPRTPHGHEDKRETIEINPKLEVMDLHSSSPPVVDVLSFDSTTVTDSTCRAVPGKGEDICRYFLNPLLMPECSSTIMKKKPEDVGDPPSENQRSVPLAVADALEHIMEQLNILTQSVSIVEQRLSLTEDKLKDCLENQQKLFSVIQQKS", "length": 477 }, "evidence": [ { "id": "F1SPZ6", "url": "https://omabrowser.org/oma/group/F1SPZ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BHD1-1", "protein_name": "POC1 centriolar protein homolog B", "gene_name": "Poc1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASGLEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLTSGGADAQVLIWRTNFIHLHCKDPKRNLKRLHFEASPHLLDIYPRSPHSHEDRKETIEINPKREVMDLQSSSPPVVDVLSFDSTTMTDSTYRAVPGKGEDICRYFLNPLLMPECSSTTVKKRPEDVSDVPSESLRSVPLAVADALEHIMEQLNILTQTVSILEQRLSLTEDKLRDCLENQQKLFSAVQQKS", "length": 476 }, "evidence": [ { "id": "F1SPZ6", "url": "https://omabrowser.org/oma/group/F1SPZ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8TC44-1", "protein_name": "POC1 centriolar protein homolog B", "gene_name": "POC1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASATEDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFASGGADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYPRTPHPHEEKVETVEINPKLEVIDLQISTPPVMDILSFDSTTTTETSGRTLPDKGEEACGYFLNPSLMSPECLPTTTKKKTEDMSDLPCESQRSIPLAVTDALEHIMEQLNVLTQTVSILEQRLTLTEDKLKDCLENQQKLFSAVQQKS", "length": 478 }, "evidence": [ { "id": "F1SPZ6", "url": "https://omabrowser.org/oma/group/F1SPZ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VU65-1", "protein_name": "POC1 centriolar protein homolog", "gene_name": "Poc1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MQGLFRDPALERHFTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIRFASHSAPVNGVAWSPKGNLVASAGHDRTVKIWEPKLRGVSGEFVAHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAKFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVALGCNRIKIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPIYTLTGHTDAVNAVAFSRDGDKFATGGSDRQLLVWQSNLHTYDASQFEAKSALASSSCESSGVSSKQSEGSSTSKSNDLSIRIDPRQSLAYQLSEENFQVLDSKHSTQPEKVLGHGMDFKQHSSSPRFF", "length": 391 }, "evidence": [ { "id": "F1SPZ6", "url": "https://omabrowser.org/oma/group/F1SPZ6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cell population proliferation", "id": "GO:0008283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008283", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" }, { "name": "retina homeostasis", "id": "GO:0001895", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001895", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" }, { "name": "positive regulation of centriole elongation", "id": "GO:1903724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903724", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" }, { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" }, { "name": "microtubule-based process", "id": "GO:0007017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007017", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" }, { "name": "multicellular organismal-level homeostasis", "id": "GO:0048871", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048871", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ6", "url": "https://www.uniprot.org/uniprotkb/F1SPZ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SPZ6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 478, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SPZ6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SPZ6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 181, "end_pos": 183 }, { "start_pos": 197, "end_pos": 199 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SPZ8-1", "uniprot_ac": "F1SPZ8", "uniprot_id": "F1SPZ8_PIG", "mass": { "chemical_mass": 36413.0, "monoisotopic_mass": 36413.0 }, "refseq": { "ac": "XP_020948689", "name": "epiphycan isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948689" }, "gene_names": [ { "name": "EPYC", "type": "recommended", "evidence": [ { "id": "F1SPZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8" } ] }, { "name": "EPYC", "type": "synonym", "evidence": [ { "id": "XP_020948689", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948689" } ] } ], "protein_names": [ { "name": "Epiphycan", "type": "synonym", "evidence": [ { "id": "F1SPZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8/entry#names_and_taxonomy" } ] }, { "name": "epiphycan isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020948689", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948689" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SPZ8", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EPYC", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8", "locus": { "chromosome": "5", "start_pos": 91877982, "end_pos": 91832291, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000918", "url": "https://www.ensembl.org/id/ENSSSCG00000000918" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000918", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000918", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155436", "url": "https://www.ncbi.nlm.nih.gov/gene/100155436", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043547", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043547", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EFYDIPL", "url": "https://omabrowser.org/oma/group/EFYDIPL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SPZ8", "url": "https://www.orthodb.org/?gene=F1SPZ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46269", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46269", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46269:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46269:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020948689", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948689", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SPZ8", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SPZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTLARLILGFVILDAAVTAPTLESINYDSETYDATLEDLDNLYNYENIPMGPAEIDVATVMPSGNRELLTPPPQPEEAEEEEEESTPRLIDGSSPQEPEFTGVLGPHTNEDFPTCLLCTCISTTVYCDDHELDAIPPLPKTTAYFYSRFNRIKKINKSDFANLNDLRRIDLTSNLISEIDEDAFRKLPQLQELVLRDNKIRQLPELPTTLTFIDISNNRLGRKGIKQEAFKDMYDLRHLYLTDNNLDHIPLPLPENLRALHLQNNNILEMHEDTFCNVKNLTYIRKALEDIRLDGNPINLSKTPQAYMCLPRLPVGSLV", "length": 320, "header": "tr|F1SPZ8-1|F1SPZ8_PIG Isoform 1 of Epiphycan OS=Sus scrofa OX=9823 GN=EPYC PE=3 SV=1 CANONICAL=F1SPZ8-1" }, "isoforms": [ { "isoform_ac": "F1SPZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8/entry#F1SPZ8-1", "sequence": { "sequence": "MKTLARLILGFVILDAAVTAPTLESINYDSETYDATLEDLDNLYNYENIPMGPAEIDVATVMPSGNRELLTPPPQPEEAEEEEEESTPRLIDGSSPQEPEFTGVLGPHTNEDFPTCLLCTCISTTVYCDDHELDAIPPLPKTTAYFYSRFNRIKKINKSDFANLNDLRRIDLTSNLISEIDEDAFRKLPQLQELVLRDNKIRQLPELPTTLTFIDISNNRLGRKGIKQEAFKDMYDLRHLYLTDNNLDHIPLPLPENLRALHLQNNNILEMHEDTFCNVKNLTYIRKALEDIRLDGNPINLSKTPQAYMCLPRLPVGSLV", "length": 320, "header": "tr|F1SPZ8-1|F1SPZ8_PIG Isoform 1 of Epiphycan OS=Sus scrofa OX=9823 GN=EPYC PE=3 SV=1 CANONICAL=F1SPZ8-1" }, "locus": { "chromosome": "5", "start_pos": 91876978, "end_pos": 91841211, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001002.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001002.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000980.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000980.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ8", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A061IP97-1", "protein_name": "Epiphycan", "gene_name": "Epyc", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKMLARIVLVLIIFDATLTAPTTELFNYDSEVYDAILEDVGTFYNYEQIPINQVETEKVTERLSGNRELLTPGPQLEDTQDEDKDEESTPRLIDGSSPQEPEFPGLLGPHTNEDFPTCLLCTCISTTVYCDDQELDAIPPLPKKTAYFYSRFNRIKKINKNDFANLSDLKRIDLTSNLISEIDEDAFRKLPHLQELVLRDNKIKQLPELPTTLTFIDISNNRLGRKGIKQEAFKDMYDLHHLYITDNSLDHIPLPLPESLQALHLQNNNILEMHEDTFCNVKNLTYVRKALEDIRLDGNPINLSKTPQAYMCLPRLPIGSFV", "length": 322 }, "evidence": [ { "id": "F1SPZ8", "url": "https://omabrowser.org/oma/group/F1SPZ8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0YRI9-1", "protein_name": "Epiphycan", "gene_name": "EPYC", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLVTTASCMTSKERSTNNQREKEKSRMKTFVNIFLGFFIFESVGAVPITDTVTYDSEFYDVSLGELPHPFVSAENDQSDQVETEIGTAIPSIIQESYSSAPLTEEPEEEASTPKLIDGSSAQGSGVLVPQTQDGLPTCLLCTCLGTTVYCDDRELDAVPPLPKNTMYFYSRYNRIRKINKNDFANLNNLKRIDLTANLISEIHEDAFRRLPQLLELVLRDNRIRQLPELPSTLTLIDISNNRLGRKGIRNEAFKDLHELQHLYITDNNLDHVPLPLPESLQALHLQNNNIQEMHEDTFCKMRDFSYVRRALEDIRLDGNPINLSKTPYAYMCLPRLPVGNLI", "length": 342 }, "evidence": [ { "id": "F1SPZ8", "url": "https://omabrowser.org/oma/group/F1SPZ8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P70186-1", "protein_name": "Epiphycan", "gene_name": "Epyc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGMLARVALGLIIIDAVLAAPTTELFNYDSEVYDAILEDTGTFYNYEHIPDNHVENEKVSERLSGNRELLTPGPQLGDNQDEDKDEESTPRLIDGSSPQEPEFPGLLGPHTNEDFPTCLLCTCISTTVYCDDHELDAIPPLPKKTTYFYSRFNRIKKINKNDFASLNDLKRIDLTSNLISEIDEDAFRKLPHLQELVLRDNKIKQLPELPNTLTFIDISNNRLGRKGIKQEAFKDMYDLHHLYITDNSLDHIPLPLPESLRALHLQNNDILEMHEDTFCNVKNLTYVRKALEDIRLDGNPINLSRTPQAYMCLPRLPIGSFI", "length": 322 }, "evidence": [ { "id": "F1SPZ8", "url": "https://omabrowser.org/oma/group/F1SPZ8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P79119-1", "protein_name": "Epiphycan", "gene_name": "EPYC", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKALARLIVGLLILDAAVTAPTLESINYNSETYDATLEDLDHLYNYENIPMGRAEIEIATVMPSGNRELLTPPPQPEEAEEEEEEESTPRLIDGSSPQEPEFTGVLGPQTNEDFPTCLLCTCISTTVYCDDHELDAIPPLPKNTAYFYSRFNRIKKINKNDFASLNDLRRIDLTSNLISEIDEDAFRKLPQLRELVLRDNKIRQLPELPTTLRFIDISNNRLGRKGIKQEAFKDMYDLHHLYLTDNNLDHIPLPLPENLRALHLQNNNIMEMHEDTFCNVKNLTYIRKALEDIRLDGNPINLSKTPQAYMCLPRLPIGSLV", "length": 321 }, "evidence": [ { "id": "F1SPZ8", "url": "https://omabrowser.org/oma/group/F1SPZ8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99645-1", "protein_name": "Epiphycan", "gene_name": "EPYC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKTLAGLVLGLVIFDAAVTAPTLESINYDSETYDATLEDLDNLYNYENIPVDKVEIEIATVMPSGNRELLTPPPQPEKAQEEEEEEESTPRLIDGSSPQEPEFTGVLGPHTNEDFPTCLLCTCISTTVYCDDHELDAIPPLPKNTAYFYSRFNRIKKINKNDFASLSDLKRIDLTSNLISEIDEDAFRKLPQLRELVLRDNKIRQLPELPTTLTFIDISNNRLGRKGIKQEAFKDMYDLHHLYLTDNNLDHIPLPLPENLRALHLQNNNILEMHEDTFCNVKNLTYIRKALEDIRLDGNPINLSKTPQAYMCLPRLPVGSLV", "length": 322 }, "evidence": [ { "id": "F1SPZ8", "url": "https://omabrowser.org/oma/group/F1SPZ8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ8", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "bone development", "id": "GO:0060348", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060348", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ8", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8" } ], "pmid": "" }, { "name": "articular cartilage development", "id": "GO:0061975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061975", "evidence": [ { "database": "UniProtKB", "id": "F1SPZ8", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 281, "end_pos": 283, "annotation": "n_glycosylation_sequon" }, { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SPZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SPZ8" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 115, "end_pos": 145, "start_aa": "Thr", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 }, { "start_pos": 281, "end_pos": 283 }, { "start_pos": 300, "end_pos": 302 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ03-1", "uniprot_ac": "F1SQ03", "uniprot_id": "F1SQ03_PIG", "mass": { "chemical_mass": 70599.0, "monoisotopic_mass": 70599.0 }, "refseq": { "ac": "XP_020936232", "name": "DEAD box protein 53", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936232" }, "gene_names": [ { "name": "DDX53", "type": "synonym", "evidence": [ { "id": "XP_020936232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936232" } ] } ], "protein_names": [ { "name": "RNA helicase", "type": "recommended", "evidence": [ { "id": "F1SQ03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ03/entry#names_and_taxonomy" } ] }, { "name": "3.6.4.13", "type": "synonym", "evidence": [ { "id": "F1SQ03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ03/entry#names_and_taxonomy" } ] }, { "name": "DEAD box protein 53", "type": "synonym", "evidence": [ { "id": "XP_020936232", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936232" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ03", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SQ03", "locus": {} } ], "crossref": [ { "id": "F1SQ03", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ03", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012169", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012169", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17958", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17958", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18787", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18787", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22430", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22430", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524536", "url": "https://www.ncbi.nlm.nih.gov/gene/100524536", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524536", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524536", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HKQKKDT", "url": "https://omabrowser.org/oma/group/HKQKKDT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQ03", "url": "https://www.orthodb.org/?gene=F1SQ03", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47958", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47958", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00013", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00013", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936232", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936232", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQ03", "url": "https://www.uniprot.org/uniprotkb/F1SQ03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ03-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWAPERKRAEPNSRDPRASQHGRDGRGRGRGWSSTSSHVETRASGSREPPLCFKINNSMAGVVIGRGGSKIKDIQGMTNTKIKIIKGDSEAEVKIFGSRDMKAKAKAAIEALIKNKQGGYNSRSSVGNAASQPSVGRGLSRDNSVREAQPLIDWDQIKAEVVEWEKRKWADLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSMAEQYKLHKQEKETGKKPRTPQEKFREFY", "length": 630, "header": "tr|F1SQ03-1|F1SQ03_PIG Isoform 1 of RNA helicase OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=F1SQ03-1" }, "isoforms": [ { "isoform_ac": "F1SQ03-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ03/entry#F1SQ03-1", "sequence": { "sequence": "MAWAPERKRAEPNSRDPRASQHGRDGRGRGRGWSSTSSHVETRASGSREPPLCFKINNSMAGVVIGRGGSKIKDIQGMTNTKIKIIKGDSEAEVKIFGSRDMKAKAKAAIEALIKNKQGGYNSRSSVGNAASQPSVGRGLSRDNSVREAQPLIDWDQIKAEVVEWEKRKWADLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPIPNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEEEKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQDDWKVAGELIEILQRANQSIPEDLLSMAEQYKLHKQEKETGKKPRTPQEKFREFY", "length": 630, "header": "tr|F1SQ03-1|F1SQ03_PIG Isoform 1 of RNA helicase OS=Sus scrofa OX=9823 GN= PE=3 SV=2 CANONICAL=F1SQ03-1" }, "locus": { "chromosome": "X", "start_pos": 19168911, "end_pos": 19167022, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013311.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013311.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012954.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012954.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ03", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524536", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524536", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1SQ03", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SQ03", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SQ03", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" } ], "pmid": "" }, { "name": "RNA helicase activity", "id": "GO:0003724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003724", "evidence": [ { "database": "UniProtKB", "id": "F1SQ03", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 592, "end_pos": 594, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ03-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 630, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ03-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ03" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" }, { "id": "PS51195", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51195" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DEAD-box RNA helicase Q", "eco_id": "ECO_0000259", "start_pos": 224, "end_pos": 252, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQ03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 255, "end_pos": 430, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQ03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 442, "end_pos": 603, "start_aa": "Thr", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQ03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ03" }, { "id": "PRU00552", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00552" } ], "ann_type": "Motif_Annotation", "uniprotkb_annotation": "Q motif", "eco_id": "ECO_0000256", "start_pos": 224, "end_pos": 252, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 57, "end_pos": 59 }, { "start_pos": 592, "end_pos": 594 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ05-1", "uniprot_ac": "F1SQ05", "uniprot_id": "F1SQ05_PIG", "mass": { "chemical_mass": 86308.0, "monoisotopic_mass": 86308.0 }, "refseq": { "ac": "NP_001231523", "name": "phosphate-regulating neutral endopeptidase PHEX", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231523" }, "gene_names": [ { "name": "PHEX", "type": "recommended", "evidence": [ { "id": "F1SQ05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ] }, { "name": "PHEX", "type": "synonym", "evidence": [ { "id": "NP_001231523", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231523" } ] } ], "protein_names": [ { "name": "Phosphate regulating endopeptidase X-linked", "type": "synonym", "evidence": [ { "id": "F1SQ05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ05/entry#names_and_taxonomy" } ] }, { "name": "phosphate regulating endopeptidase homolog X-linked", "type": "synonym", "evidence": [ { "id": "NP_001231523", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231523" } ] }, { "name": "phosphate-regulating neutral endopeptidase PHEX", "type": "synonym", "evidence": [ { "id": "NP_001231523", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231523" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PHEX", "url": "https://www.uniprot.org/uniprotkb/F1SQ05", "locus": { "chromosome": "X", "start_pos": 18418004, "end_pos": 18203174, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012167", "url": "https://www.ensembl.org/id/ENSSSCG00000012167" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012167", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012167", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08662", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08662", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154258", "url": "https://www.ncbi.nlm.nih.gov/gene/100154258", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000718", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000718", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018497", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018497", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042089", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042089", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154258", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154258", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QAKPEYC", "url": "https://omabrowser.org/oma/group/QAKPEYC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQ05", "url": "https://www.orthodb.org/?gene=F1SQ05", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11733", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11733", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11733:SF133", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11733:SF133", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05649", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05649", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231523", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231523", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ05-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAETGSGMESGKKANRGTQIALAVFVGGTLVLGTVLFLVSQGFLSLQAKPEYCLKPECIEAAASILSKINLSVDPCDNFFRFACDGWINSNPIPEDMPSYGIYPWLRRNVDLKLKALLEKSISRRRDTEAIQKAKILYSSCMNEKAIEKADAKPLLHILRHSPFRWPVLESNIGPEGVWSERKFSLLQTLATFRGQYSNSVFIRLYVSSDDKVSNEHILKLDQAALSLAVREDYLDNSTEAKSYRDALYKFMVDTAVLLGANSSRAEHDMKSVLRLEIKIAEIMIPHENRTSEAMYNKMNISQLSAMIPQFDWLGYIKKVIDVRLYPELKDLGPSENVVVRVPQYFKDLFRILGSERKKTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESTLPYVVGKMFVNVHFQEDKKEMMEELIEGVRWAFIDMLEKENEWMDAGTKRKAKEKARAVLAKVGYPEFIMNDTYVNEDLKAIKFSESDYFGNVLQTRKYLAQTDFFWLRKAVPKTEWFTNPTTVNAFYSASTNQIRFPAGELQKPFFWGTEYPRSLSYGAIGVIVGHEFTHGFDNNGRKYDKNGNLDPWWSVDSEEKFKEKTKCMINQYSNYYWKKAGLNVKGKRTLGENIADNGGLRQAFRAYRKWIDDKRQGVEEPLLPGVEFSNNQLFFLSYAHVRCNSYRPEAAREQIQVGAHSPPQFRVNGAVSNFEEFQKAFNCPSNSTMNRGTDSCRLW", "length": 749, "header": "tr|F1SQ05-1|F1SQ05_PIG Isoform 1 of Phosphate regulating endopeptidase X-linked OS=Sus scrofa OX=9823 GN=PHEX PE=4 SV=3 CANONICAL=F1SQ05-1" }, "isoforms": [ { "isoform_ac": "F1SQ05-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ05/entry#F1SQ05-1", "sequence": { "sequence": "MEAETGSGMESGKKANRGTQIALAVFVGGTLVLGTVLFLVSQGFLSLQAKPEYCLKPECIEAAASILSKINLSVDPCDNFFRFACDGWINSNPIPEDMPSYGIYPWLRRNVDLKLKALLEKSISRRRDTEAIQKAKILYSSCMNEKAIEKADAKPLLHILRHSPFRWPVLESNIGPEGVWSERKFSLLQTLATFRGQYSNSVFIRLYVSSDDKVSNEHILKLDQAALSLAVREDYLDNSTEAKSYRDALYKFMVDTAVLLGANSSRAEHDMKSVLRLEIKIAEIMIPHENRTSEAMYNKMNISQLSAMIPQFDWLGYIKKVIDVRLYPELKDLGPSENVVVRVPQYFKDLFRILGSERKKTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESTLPYVVGKMFVNVHFQEDKKEMMEELIEGVRWAFIDMLEKENEWMDAGTKRKAKEKARAVLAKVGYPEFIMNDTYVNEDLKAIKFSESDYFGNVLQTRKYLAQTDFFWLRKAVPKTEWFTNPTTVNAFYSASTNQIRFPAGELQKPFFWGTEYPRSLSYGAIGVIVGHEFTHGFDNNGRKYDKNGNLDPWWSVDSEEKFKEKTKCMINQYSNYYWKKAGLNVKGKRTLGENIADNGGLRQAFRAYRKWIDDKRQGVEEPLLPGVEFSNNQLFFLSYAHVRCNSYRPEAAREQIQVGAHSPPQFRVNGAVSNFEEFQKAFNCPSNSTMNRGTDSCRLW", "length": 749, "header": "tr|F1SQ05-1|F1SQ05_PIG Isoform 1 of Phosphate regulating endopeptidase X-linked OS=Sus scrofa OX=9823 GN=PHEX PE=4 SV=3 CANONICAL=F1SQ05-1" }, "locus": { "chromosome": "X", "start_pos": 18417730, "end_pos": 18203385, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013308.4", "url": "https://www.ensembl.org/id/ENSSSCT00000013308.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012952.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012952.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154258", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154258", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BKS5-1", "protein_name": "Phosphate regulating endopeptidase X-linked", "gene_name": "PHEX", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEAETGSSMEIGKTANRGTRIALAVFVGGTLVLGIVLFLVSQGFLSLHAKPEYCLKPECIEAAASILSKVNLSVDPCDNFFRFACDGWIHSNPIPEDMPSYGIYPWLRRNVDLKLKALLEKSISRRRDTEAIQKAKILYSSCMNEKAIEKADAKPLLHILRHSPFRWPVLESNIGPEGVWSERKFSLLQTLATFRGQYSNSVFIRLYVSSDDKMSNEHILKLDQAALSLAVREDYLDNSTEAKSYRDALYKFMVDTAVLLGANSSRAEHDMKSVLRLEIKIAEIMIPHENRTSEAMYNKMNISQLSAMIPQFDWLSYIKKVIDVRLYPELKDIGPSENVVVRVPQYFKDLFRILGSERKKTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESTLPYVVGKMFVNVHFQEDKKEMMEELIEGVRWAFIDMLEKENEWMDAGTKRKAKEKARAVLAKVGYPEFIMNDTHINEDLKAIKFSESDYFGNVLQTRKYLAQTDFFWLRKAVPKTEWFTNPTTVNAFYSASTNQIRFPAGELQKPFFWGTEYPRSLSYGAIGVIVGHEFTHGFDNNGRKYDKNGNLDPWWSMDSEEKFKEKTKCMINQYSNYYWKKAGLNVKGKRTLGENIADNGGLRQAFRAYRKWINDKRQGVEEPLLPGIEFTNNQLFFMSYAHVRCNSYRPEAAREQIQAGAHSPPQFRVNGAVSNFEEFQKAFNCPSNSTMNRGAESCRLW", "length": 749 }, "evidence": [ { "id": "F1SQ05", "url": "https://omabrowser.org/oma/group/F1SQ05/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1R6K1-1", "protein_name": "Phosphate-regulating neutral endopeptidase PHEX isoform 1", "gene_name": "phex", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEMERLGRGGTKASAGPNTLLKAALAVCVCVCIALLIAVITVSQKASNEDLCLGPHCVEAAGSILSKMDQSVDPCDDFYQYACGGWLRENPIPEDSSSYGIYPWLRQNVDLKLKELLEQPVRSGDIEAVKKAKVLYASCMNESALEIEDANPLLKNLKQKEFRWPVLGDALGSSSRWVESQFNLLETLAQIRSQHSKSVLIRLFVAPDDKNSNQYIIKLDQASLSLSSREDYITNTTEAQMYREALLRLMVDVSVMLGASEQAAEAQMKSVLDFEMKLAQIVIPYENRTSENMYNKYSLSKLQRTVPDFNWLGFVRAVIDTELYPDLKISSSEQVIVRAPQYFKDLFKLINATDTRTVANYVIWRSVFSRITTLSRRFLYRYLDFARVTTGTTSLTPRWDKCVNYVENTLIYAAGRLFVDKHFQEDKKHMMEELINGIRWAFIDILEKENEWMDEETKRKAIDKAHAVLPKVGYPDFILNDTYINEDIKRLAFTMTDYFGNVMQTLKFIAQSDIGWLRKTVPRTEWFTNPTTVNAFYSSSTNQIRFPAGELQKPFFWGLNYPRSLSYGAIGVIVGHELTHGFDNNGRKYDKDGNLDQWWSNSSINRFTEKTQCMIDQYNSYYWKEAGLNVKGKRTLAENIADNGGIRESFRAYRRWVEKERGGVEEPLLPGVGLTHNQLFFLSYAHVRCNAYRPEAARDQIQSGAHSPPKYRVIGAMSNFEEFRKAFNCPETSIMNRGAESCRVW", "length": 745 }, "evidence": [ { "id": "F1SQ05", "url": "https://omabrowser.org/oma/group/F1SQ05/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3V723-1", "protein_name": "Phosphate regulating endopeptidase X-linked", "gene_name": "Phex", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAEAGSTMETGKGTNRGIRIALALFITGTLVLGTLLFLVSQGLLSFQAKQEYCLKPECIEAAAAIMSKVNLSVDPCENFFRFACDGWISNNPIPEDMPSYGVYPWLRHNVDLKLKALLEKSVSRRRDTEAVQKAKILYSSCMNEKAIEKADAKPLLHILRHSPFRWPVLEANIGPEGVWSERKFSLLQTLATFRGQYSNSVFIRLYVSPDDKASNEHILKLDQATLSLAVREDFLDNTTEAKSYRDALYKFMVDTAVLLGANSSRAEHDMKSVLRLEIKIAEIMIPHENRTSEAMYNKMNISELSAMIPQFDWLGYIKKVIDTRLYPHLKDIGPSENVVVRVPQYFKDLFRILGAERKKTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESALPYVVGKMFVNVHFQEDKKEMMEELIEGVRWAFIDMLEKENEWMDAGTKRKAQEKARAVLAKVGYPEFIMNDTYVNEDLKAIKFSESDYFGNVLQTRKYLAQSDFFWLRKAVPKTEWFTNPTTVNAFYSASTNQIRFPAGELQKPFFWGTEYPRSLSYGAIGVIVGHEFTHGFDNNGRKYDKNGNLDPWWSVDSEEKFKEKTKCMINQYSNYYWKKAGLNVKGKRTLGENIADNGGLREAFRAYRKWINDRRQGVEEPLLPGITFTNNQLFFLSYAHVRCNSYRPEAAREQVQIGAHSPPQFRVNGAISNFEEFQKAFNCPANSTMNRGADSCRLW", "length": 749 }, "evidence": [ { "id": "F1SQ05", "url": "https://omabrowser.org/oma/group/F1SQ05/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70669-1", "protein_name": "Phosphate-regulating neutral endopeptidase PHEX", "gene_name": "Phex", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEAETGSTMETGKGTNRGIRIALALFIGGTLVLGTLLFLVSQGLLSFQAKQEYCLKPECIEAAAAIMSKVNLSVDPCENFFRFACDGWISNNPIPEDMPSYGVYPWLRHNVDLKLKALLEKSVSRRRDTEAVQKAKILYSSCMNEKAIEKADAKPLLHILRHSPFRWPVLEANIGPEGVWSERKFSLLQTLATFRGQYSNSVFIRLYVSPDDKASNEHILKLDQATLSLAVREDFLDNTTEAKSYRDALYKFMVDTAVLLGANSSRAEHDMKSVLRLEIKIAEIMIPHENRTSEAMYNKMNISELSAMIPQFDWLGYIKKVIDTRLYPHLKDIGPSENVVVRVPQYFKDLFRILGAERKKTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESALPYVVGKMFVNVHFQEDKKEMMEELIEGVRWAFIDMLEKENEWMDAGTKRKAQEKARAVLAKVGYPEFIMNDTYVNEDLKAIKFSESDYFGNVLQTRKYLAQSDFFWLRKAVPKTEWFTNPTTVNAFYSASTNQIRFPAGELQKPFFWGTEYPRSLSYGAIGVIVGHEFTHGFDNNGRKYDKNGNLDPWWSVESEEKFKEKTKCMINQYSNYYWKKAGLNVKGKRTLGENIADNGGLREAFRAYRKWINDRRQGVEEPLLPGITFTNNQLFFLSYAHVRCNSYRPEAAREQVQIGAHSPPQFRVNGAISNFEEFQKAFNCPRNSTMNRGADSCRLW", "length": 749 }, "evidence": [ { "id": "F1SQ05", "url": "https://omabrowser.org/oma/group/F1SQ05/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P78562-1", "protein_name": "Phosphate-regulating neutral endopeptidase PHEX", "gene_name": "PHEX", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAETGSSVETGKKANRGTRIALVVFVGGTLVLGTILFLVSQGLLSLQAKQEYCLKPECIEAAAAILSKVNLSVDPCDNFFRFACDGWISNNPIPEDMPSYGVYPWLRHNVDLKLKELLEKSISRRRDTEAIQKAKILYSSCMNEKAIEKADAKPLLHILRHSPFRWPVLESNIGPEGVWSERKFSLLQTLATFRGQYSNSVFIRLYVSPDDKASNEHILKLDQATLSLAVREDYLDNSTEAKSYRDALYKFMVDTAVLLGANSSRAEHDMKSVLRLEIKIAEIMIPHENRTSEAMYNKMNISELSAMIPQFDWLGYIKKVIDTRLYPHLKDISPSENVVVRVPQYFKDLFRILGSERKKTIANYLVWRMVYSRIPNLSRRFQYRWLEFSRVIQGTTTLLPQWDKCVNFIESALPYVVGKMFVDVYFQEDKKEMMEELVEGVRWAFIDMLEKENEWMDAGTKRKAKEKARAVLAKVGYPEFIMNDTHVNEDLKAIKFSEADYFGNVLQTRKYLAQSDFFWLRKAVPKTEWFTNPTTVNAFYSASTNQIRFPAGELQKPFFWGTEYPRSLSYGAIGVIVGHEFTHGFDNNGRKYDKNGNLDPWWSTESEEKFKEKTKCMINQYSNYYWKKAGLNVKGKRTLGENIADNGGLREAFRAYRKWINDRRQGLEEPLLPGITFTNNQLFFLSYAHVRCNSYRPEAAREQVQIGAHSPPQFRVNGAISNFEEFQKAFNCPPNSTMNRGMDSCRLW", "length": 749 }, "evidence": [ { "id": "F1SQ05", "url": "https://omabrowser.org/oma/group/F1SQ05/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "F1SQ05", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" }, { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" }, { "start_pos": 736, "end_pos": 738, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" }, { "id": "PF01431", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01431" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M13 C-terminal", "eco_id": "ECO_0000259", "start_pos": 538, "end_pos": 742, "start_aa": "Asn", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQ05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ05" }, { "id": "PF05649", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05649" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M13 N-terminal", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 479, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 238, "end_pos": 240 }, { "start_pos": 263, "end_pos": 265 }, { "start_pos": 290, "end_pos": 292 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 484, "end_pos": 486 }, { "start_pos": 71, "end_pos": 73 }, { "start_pos": 736, "end_pos": 738 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ08-1", "uniprot_ac": "F1SQ08", "uniprot_id": "F1SQ08_PIG", "mass": { "chemical_mass": 40325.0, "monoisotopic_mass": 40325.0 }, "refseq": {}, "gene_names": [ { "name": "KERA", "type": "recommended", "evidence": [ { "id": "F1SQ08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ08" } ] } ], "protein_names": [ { "name": "Keratocan", "type": "recommended", "evidence": [ { "id": "F1SQ08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ08/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ08", "url": "https://www.uniprot.org/uniprotkb/F1SQ08" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KERA", "url": "https://www.uniprot.org/uniprotkb/F1SQ08", "locus": { "chromosome": "5", "start_pos": 91802468, "end_pos": 91796324, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000917", "url": "https://www.ensembl.org/id/ENSSSCG00000000917" } ] } } ], "crossref": [ { "id": "F1SQ08", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ08", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000917", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000917", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022854", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022854", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2022857", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022857", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQ08", "url": "https://www.uniprot.org/uniprotkb/F1SQ08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ08-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATPICFIIWVLFITDSVWTRSVRQVYEANDPEDWTMHDFDCPRECFCPPSFPTALYCENRGLKEIPAIPSRIWYLYLENNLIETIPEKPFENATLRWINLNKNKITNYGIEKGALSQLKKLLFLFLEDNELEEVPSPLPRSLEQLQLARNKVSRIPQGTFSNLENLTLLDLQHNKLLDNAFQRDTFKGLKNLMQLNMAKNALRNMPPRLPANTMQLFLDNNSIEGIPENYFNVIPKVAFLRLNHNKLSDAGLPSSGFNVSSILDLQLSHNRLTVPRISAHLQHLHLDHNKIKNVNVSVICPTSPTTLPAEQDSFSYGPHLRYLRLDGNEIKPPIPVDLMDCFRLLQAVII", "length": 351, "header": "tr|F1SQ08-1|F1SQ08_PIG Isoform 1 of Keratocan OS=Sus scrofa OX=9823 GN=KERA PE=3 SV=3 CANONICAL=F1SQ08-1" }, "isoforms": [ { "isoform_ac": "F1SQ08-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ08/entry#F1SQ08-1", "sequence": { "sequence": "MATPICFIIWVLFITDSVWTRSVRQVYEANDPEDWTMHDFDCPRECFCPPSFPTALYCENRGLKEIPAIPSRIWYLYLENNLIETIPEKPFENATLRWINLNKNKITNYGIEKGALSQLKKLLFLFLEDNELEEVPSPLPRSLEQLQLARNKVSRIPQGTFSNLENLTLLDLQHNKLLDNAFQRDTFKGLKNLMQLNMAKNALRNMPPRLPANTMQLFLDNNSIEGIPENYFNVIPKVAFLRLNHNKLSDAGLPSSGFNVSSILDLQLSHNRLTVPRISAHLQHLHLDHNKIKNVNVSVICPTSPTTLPAEQDSFSYGPHLRYLRLDGNEIKPPIPVDLMDCFRLLQAVII", "length": 351, "header": "tr|F1SQ08-1|F1SQ08_PIG Isoform 1 of Keratocan OS=Sus scrofa OX=9823 GN=KERA PE=3 SV=3 CANONICAL=F1SQ08-1" }, "locus": { "chromosome": "5", "start_pos": 91801354, "end_pos": 91796324, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001001.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001001.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000979.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000979.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 303, "start_aa": "Thr", "end_pos": 303, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr303", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ08", "url": "https://www.uniprot.org/uniprotkb/F1SQ08" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2022854", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022854", "resource": "Reactome", "description": "Keratan sulfate biosynthesis" }, { "id": "R-SSC-2022857", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022857", "resource": "Reactome", "description": "Keratan sulfate degradation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SQ08", "url": "https://www.uniprot.org/uniprotkb/F1SQ08" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ08-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 351, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ08-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ08" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ08" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 75, "start_aa": "Asp", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 303 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 166, "end_pos": 168 }, { "start_pos": 221, "end_pos": 223 }, { "start_pos": 259, "end_pos": 261 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ09-1", "uniprot_ac": "F1SQ09", "uniprot_id": "F1SQ09_PIG", "mass": { "chemical_mass": 38779.0, "monoisotopic_mass": 38779.0 }, "refseq": { "ac": "NP_001230268", "name": "lumican precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230268" }, "gene_names": [ { "name": "LUM", "type": "recommended", "evidence": [ { "id": "F1SQ09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ09" } ] }, { "name": "LUM", "type": "synonym", "evidence": [ { "id": "NP_001230268", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230268" } ] } ], "protein_names": [ { "name": "Lumican", "type": "recommended", "evidence": [ { "id": "F1SQ09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ09/entry#names_and_taxonomy" } ] }, { "name": "lumican precursor", "type": "synonym", "evidence": [ { "id": "NP_001230268", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230268" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ09", "url": "https://www.uniprot.org/uniprotkb/F1SQ09" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LUM", "url": "https://www.uniprot.org/uniprotkb/F1SQ09", "locus": { "chromosome": "5", "start_pos": 91757598, "end_pos": 91748885, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000916", "url": "https://www.ensembl.org/id/ENSSSCG00000000916" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000916", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000916", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152607", "url": "https://www.ncbi.nlm.nih.gov/gene/100152607", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152607", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152607", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DCPINFP", "url": "https://omabrowser.org/oma/group/DCPINFP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQ09", "url": "https://www.orthodb.org/?gene=F1SQ09", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022854", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022854", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2022857", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022857", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-216083", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230268", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230268", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQ09", "url": "https://www.uniprot.org/uniprotkb/F1SQ09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ09-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHLGVFTLLLATIGSASGHYYDDDDYYFPLSIYGRSSPNCAPECNCPESYPTAMYCDELKLKSVPMVPPGIKYLYLRNNQIDHIDDKAFENVTDLEWLILDHNLLENSKIKGRVFSKLKQLKKLHINYNNLTESVGPLPKSLVDLQLTNNKISKLGSFDGLVNLTFIHLQHNQLKEDAVSAAFRGLKGLEYLDLSFNQMTKLPSGLPVSLLTLYLDNNKISNIPDEYFKHFSGLQYLRLSHNELADSGIPGNSFNLSSLLELDLSYNKLKNIPTVNENLENYYLEVNELEKFEVKSFCKILGPLSYSKIKHLRLDGNRITQTSLPPDMYECLRVANEITVN", "length": 341, "header": "tr|F1SQ09-1|F1SQ09_PIG Isoform 1 of Lumican OS=Sus scrofa OX=9823 GN=LUM PE=1 SV=1 CANONICAL=F1SQ09-1" }, "isoforms": [ { "isoform_ac": "F1SQ09-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ09/entry#F1SQ09-1", "sequence": { "sequence": "MHLGVFTLLLATIGSASGHYYDDDDYYFPLSIYGRSSPNCAPECNCPESYPTAMYCDELKLKSVPMVPPGIKYLYLRNNQIDHIDDKAFENVTDLEWLILDHNLLENSKIKGRVFSKLKQLKKLHINYNNLTESVGPLPKSLVDLQLTNNKISKLGSFDGLVNLTFIHLQHNQLKEDAVSAAFRGLKGLEYLDLSFNQMTKLPSGLPVSLLTLYLDNNKISNIPDEYFKHFSGLQYLRLSHNELADSGIPGNSFNLSSLLELDLSYNKLKNIPTVNENLENYYLEVNELEKFEVKSFCKILGPLSYSKIKHLRLDGNRITQTSLPPDMYECLRVANEITVN", "length": 341, "header": "tr|F1SQ09-1|F1SQ09_PIG Isoform 1 of Lumican OS=Sus scrofa OX=9823 GN=LUM PE=1 SV=1 CANONICAL=F1SQ09-1" }, "locus": { "chromosome": "5", "start_pos": 91755705, "end_pos": 91751488, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001000.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001000.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000978.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000978.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ09", "url": "https://www.uniprot.org/uniprotkb/F1SQ09" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152607", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152607", "resource": "KEGG Pathway" }, { "id": "R-SSC-2022854", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022854", "resource": "Reactome", "description": "Keratan sulfate biosynthesis" }, { "id": "R-SSC-2022857", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022857", "resource": "Reactome", "description": "Keratan sulfate degradation" }, { "id": "R-SSC-216083", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-216083", "resource": "Reactome", "description": "Integrin cell surface interactions" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7IET1-1", "protein_name": "Lumican", "gene_name": "Lum", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNMCAFALVLALICGVSGQYYDYDAPLFMYGQLSPNCAPECNCPHSYPTAMYCDDLKLKSVPMVPPGIKYLYLRNNQIDHIDEKAFENVTDLQWLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLQDLQLTHNKISKLGSFEGLANLTFIHLQYNQLKEDAVSASLKGLKSLEYLDLSFNQIAKLPSGLPASLLTLYLDSNKISNIPDEYFKRFTGLQYLRLSHNQLADSGVPGNSFNISSLLELDLSYNKLKSIPTVNENLENYYLEVNELEKFDVKSFCKILGPLSYSKIKHLRLDGNPLTQSNLPPDMYECLRVANEININ", "length": 338 }, "evidence": [ { "id": "F1SQ09", "url": "https://omabrowser.org/oma/group/F1SQ09/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P51884-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLSAFTLFLALIGGTSGQYYDYDFPLSIYGQSSPNCAPECNCPESYPSAMYCDELKLKSVPMVPPGIKYLYLRNNQIDHIDEKAFENVTDLQWLILDHNLLENSKIKGRVFSKLKQLKKLHINHNNLTESVGPLPKSLEDLQLTHNKITKLGSFEGLVNLTFIHLQHNRLKEDAVSAAFKGLKSLEYLDLSFNQIARLPSGLPVSLLTLYLDNNKISNIPDEYFKRFNALQYLRLSHNELADSGIPGNSFNVSSLVELDLSYNKLKNIPTVNENLENYYLEVNQLEKFDIKSFCKILGPLSYSKIKHLRLDGNRISETSLPPDMYECLRVANEVTLN", "length": 338 }, "evidence": [ { "id": "F1SQ09", "url": "https://omabrowser.org/oma/group/F1SQ09/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P51885-1", "protein_name": "Lumican", "gene_name": "Lum", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVCAFSLALALVGSVSGQYYDYDIPLFMYGQISPNCAPECNCPHSYPTAMYCDDLKLKSVPMVPPGIKYLYLRNNQIDHIDEKAFENVTDLQWLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLQDLQLTNNKISKLGSFDGLVNLTFIYLQHNQLKEDAVSASLKGLKSLEYLDLSFNQMSKLPAGLPTSLLTLYLDNNKISNIPDEYFKRFTGLQYLRLSHNELADSGVPGNSFNISSLLELDLSYNKLKSIPTVNENLENYYLEVNELEKFDVKSFCKILGPLSYSKIKHLRLDGNPLTQSSLPPDMYECLRVANEITVN", "length": 338 }, "evidence": [ { "id": "F1SQ09", "url": "https://omabrowser.org/oma/group/F1SQ09/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P51886-1", "protein_name": "Lumican", "gene_name": "Lum", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNVCTFTLVLALVGSVSGQYYDYDAPLFMYGELSPNCAPECNCPHSYPTAMYCDDLKLKSVPMVPPGIKYLYLRNNQIDHIDEKAFENVTDLQWLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLQDLQLANNKISKLGSFDGLVNLTFIYLQHNQLKEEAVSASLKGLKSLEYLDLSFNQMSKLPAGLPTSLLTLYLDNNKITNIPDEYFNRFTGLQYLRLSHNELADSGVPGNSFNISSLLELDLSYNKLKSIPTVNENLENYYLEVNKLEKFDVKSFCKILGPLSYSKIKHLRLDGNPLTQSSLPPDMYECLRVANEITVN", "length": 338 }, "evidence": [ { "id": "F1SQ09", "url": "https://omabrowser.org/oma/group/F1SQ09/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P51890-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTLNSLPIFLVLISGIFCQYDYGPADDYGYDPFGPSTAVCAPECNCPLSYPTAMYCDNLKLKTIPIVPSGIKYLYLRNNMIEAIEENTFDNVTDLQWLILDHNHLENSKIKGRVFSKLKNLKKLHINYNNLTEAVGPLPKTLDDLQLSHNKITKVNPGALEGLVNLTVIHLQNNQLKTDSISGAFKGLNSLLYLDLSFNQLTKLPTGLPHSLLMLYFDNNQISNIPDEYFQGFKTLQYLRLSHNKLTDSGIPGNVFNITSLVELDLSFNQLKSIPTVSENLENFYLQVNKINKFPLSSFCKVVGPLTYSKITHLRLDGNNLTRADLPQEMYNCLRVAADISLE", "length": 343 }, "evidence": [ { "id": "F1SQ09", "url": "https://omabrowser.org/oma/group/F1SQ09/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q05443-1", "protein_name": "Lumican", "gene_name": "LUM", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLGVFPLLLALIGGASSTYPDYYEYYDFPQALYGRSSPNCAPECNCPESYPSAMYCDELKLKSVPMVPPGIKYLYLRNNQIDHIDDKAFENVTDLQWLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLVDLQLTNNKISKLGSFDGLVNLTFIHLQHNQLKEDAVSAALKGLKSLEYLDLSFNQMTKLPSGLPVSLLTLYLDNNKISNIPDEYFKRFSALQYLRLSHNELADSGVPGNSFNVSSLLELDLSYNKLKSIPTVNENLENYYLEVNELEKFDVKSFCKILGPLSYSKIKHLRLDGNHITQTSLPPDMYECLRVANEITVN", "length": 342 }, "evidence": [ { "id": "F1SQ09", "url": "https://omabrowser.org/oma/group/F1SQ09/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of transforming growth factor beta1 production", "id": "GO:0032914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032914", "evidence": [ { "database": "UniProtKB", "id": "F1SQ09", "url": "https://www.uniprot.org/uniprotkb/F1SQ09" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SQ09", "url": "https://www.uniprot.org/uniprotkb/F1SQ09" } ], "pmid": "" }, { "name": "fibrillar collagen trimer", "id": "GO:0005583", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005583", "evidence": [ { "database": "UniProtKB", "id": "F1SQ09", "url": "https://www.uniprot.org/uniprotkb/F1SQ09" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "collagen binding", "id": "GO:0005518", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005518", "evidence": [ { "database": "UniProtKB", "id": "F1SQ09", "url": "https://www.uniprot.org/uniprotkb/F1SQ09" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ09" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 73, "start_aa": "Asn", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 }, { "start_pos": 163, "end_pos": 165 }, { "start_pos": 255, "end_pos": 257 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ28-1", "uniprot_ac": "F1SQ28", "uniprot_id": "F1SQ28_PIG", "mass": { "chemical_mass": 26045.0, "monoisotopic_mass": 26045.0 }, "refseq": { "ac": "XP_020948016", "name": "NKG2-A/NKG2-B type II integral membrane protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948016" }, "gene_names": [ { "name": "LOC100523789", "type": "recommended", "evidence": [ { "id": "F1SQ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ] }, { "name": "LOC100523789", "type": "synonym", "evidence": [ { "id": "XP_020948016", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948016" } ] } ], "protein_names": [ { "name": "C-type lectin domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SQ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ28/entry#names_and_taxonomy" } ] }, { "name": "NKG2-A/NKG2-B type II integral membrane protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020948016", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948016" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100523789", "url": "https://www.uniprot.org/uniprotkb/F1SQ28", "locus": {} } ], "crossref": [ { "id": "F1SQ28", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ28", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000640", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000640", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03593", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03593", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523789", "url": "https://www.ncbi.nlm.nih.gov/gene/100523789", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523789", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523789", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HRCGSSQ", "url": "https://omabrowser.org/oma/group/HRCGSSQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQ28", "url": "https://www.orthodb.org/?gene=F1SQ28", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22800", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22800", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22800:SF242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22800:SF242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2424491", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2424491", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020948016", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948016", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ28-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNQGVTYAELNVANNSKRRQIKLKDTKSSISITEQEIVYTELNLQNASKNLQGNDKNHHCQEKLVAGTLGIICLGLMFAVVAMIVVTPATVIPEQNDSSPITRLQKEFHCGNCPKEWFTYSNNCYYATTEKKTWNESLMACASRNSTLLRIDNEEEMKFLESLSSVLWVAVSRKSRGHPWMWINGSTCTLKITDRSPGKRNCAILYPMGIKAENCNFPNAYNCKHKLKK", "length": 230, "header": "tr|F1SQ28-1|F1SQ28_PIG Isoform 1 of C-type lectin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523789 PE=4 SV=2 CANONICAL=F1SQ28-1" }, "isoforms": [ { "isoform_ac": "F1SQ28-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ28/entry#F1SQ28-1", "sequence": { "sequence": "MNNQGVTYAELNVANNSKRRQIKLKDTKSSISITEQEIVYTELNLQNASKNLQGNDKNHHCQEKLVAGTLGIICLGLMFAVVAMIVVTPATVIPEQNDSSPITRLQKEFHCGNCPKEWFTYSNNCYYATTEKKTWNESLMACASRNSTLLRIDNEEEMKFLESLSSVLWVAVSRKSRGHPWMWINGSTCTLKITDRSPGKRNCAILYPMGIKAENCNFPNAYNCKHKLKK", "length": 230, "header": "tr|F1SQ28-1|F1SQ28_PIG Isoform 1 of C-type lectin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100523789 PE=4 SV=2 CANONICAL=F1SQ28-1" }, "locus": { "chromosome": "5", "start_pos": 61628712, "end_pos": 61624641, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000689.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000689.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000674.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000674.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523789", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523789", "resource": "KEGG Pathway" }, { "id": "R-SSC-2424491", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2424491", "resource": "Reactome", "description": "DAP12 signaling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "natural killer cell mediated immunity", "id": "GO:0002228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002228", "evidence": [ { "database": "UniProtKB", "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ], "pmid": "" }, { "name": "positive regulation of natural killer cell mediated cytotoxicity", "id": "GO:0045954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045954", "evidence": [ { "database": "UniProtKB", "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ], "pmid": "" }, { "name": "stimulatory C-type lectin receptor signaling pathway", "id": "GO:0002223", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002223", "evidence": [ { "database": "UniProtKB", "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SQ28", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 136, "end_pos": 138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 185, "end_pos": 187, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ28-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 230, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ28-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ28" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ28" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 121, "end_pos": 225, "start_aa": "Tyr", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 136, "end_pos": 138 }, { "start_pos": 146, "end_pos": 148 }, { "start_pos": 15, "end_pos": 17 }, { "start_pos": 185, "end_pos": 187 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ30-1", "uniprot_ac": "F1SQ30", "uniprot_id": "F1SQ30_PIG", "mass": { "chemical_mass": 31533.0, "monoisotopic_mass": 31533.0 }, "refseq": { "ac": "XP_013843835", "name": "killer cell lectin-like receptor 8 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843835" }, "gene_names": [ { "name": "LOC106507519", "type": "recommended", "evidence": [ { "id": "F1SQ30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ30" } ] }, { "name": "LOC106507519", "type": "synonym", "evidence": [ { "id": "XP_013843835", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843835" } ] } ], "protein_names": [ { "name": "C-type lectin domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SQ30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ30/entry#names_and_taxonomy" } ] }, { "name": "killer cell lectin-like receptor 8 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013843835", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843835" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ30", "url": "https://www.uniprot.org/uniprotkb/F1SQ30" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC106507519", "url": "https://www.uniprot.org/uniprotkb/F1SQ30", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000000638", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000638", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "106507519", "url": "https://www.ncbi.nlm.nih.gov/gene/106507519", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106507519", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106507519", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HCYHQTV", "url": "https://omabrowser.org/oma/group/HCYHQTV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQ30", "url": "https://www.orthodb.org/?gene=F1SQ30", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46490", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46490", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46490:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46490:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013843835", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843835", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQ30", "url": "https://www.uniprot.org/uniprotkb/F1SQ30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ30-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ30-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNSSDCEQHPENTEQTETIPIADLEPSLALPPPPPEDEWRPIPEHTNVDASRFPFSLYGIIPVILGIFSLLLLMLCGFFGYQYFQSVQESQSKMKSFNQWNESFQNKDENFLQVQKALDQNKEILEWILNQNEYLTEALRELNAKQGDRCGPPLSHWVKYRNHCYHQTLKMVSWSECSDLCVSLNATFLNMERHRLMNIMRQLAVNHTWLGLSYHEEDNQWKWKDGSLPSLGLSLPEPSTDFQGKCVYANMYSVGTDNCTTSFSCMCEKPVC", "length": 273, "header": "tr|F1SQ30-1|F1SQ30_PIG Isoform 1 of C-type lectin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC106507519 PE=1 SV=1 CANONICAL=F1SQ30-1" }, "isoforms": [ { "isoform_ac": "F1SQ30-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ30/entry#F1SQ30-1", "sequence": { "sequence": "MSNSSDCEQHPENTEQTETIPIADLEPSLALPPPPPEDEWRPIPEHTNVDASRFPFSLYGIIPVILGIFSLLLLMLCGFFGYQYFQSVQESQSKMKSFNQWNESFQNKDENFLQVQKALDQNKEILEWILNQNEYLTEALRELNAKQGDRCGPPLSHWVKYRNHCYHQTLKMVSWSECSDLCVSLNATFLNMERHRLMNIMRQLAVNHTWLGLSYHEEDNQWKWKDGSLPSLGLSLPEPSTDFQGKCVYANMYSVGTDNCTTSFSCMCEKPVC", "length": 273, "header": "tr|F1SQ30-1|F1SQ30_PIG Isoform 1 of C-type lectin domain-containing protein OS=Sus scrofa OX=9823 GN=LOC106507519 PE=1 SV=1 CANONICAL=F1SQ30-1" }, "locus": { "chromosome": "5", "start_pos": 61566903, "end_pos": 61557189, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000687.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000687.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000672.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000672.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ30", "url": "https://www.uniprot.org/uniprotkb/F1SQ30" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106507519", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106507519", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1ME72-1", "protein_name": "Killer cell lectin-like receptor family J member 1", "gene_name": "KLRJ1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSDASDCEQPPENTEQTETIPIVDLEPSLALPPPPPEDEWGPIPEHTNVNASRFSFSLYGIIPVILGIFSLLLLMLCGFFGYQYFQSVQESESKMKSFNQWNESFQNKEKKFIQVQKLLDQNKEILEKLQNQNKNMTEALQELKAKGGDGCGSPLSHWVQHRDHCYYQTMKTVSWSECSDLCVFWNATFLNTERSRLMCILKLLAVNQTWLGLSYKEKDNEWKWEDGSLPSGLKWHLPKPSMDFQGKCVYAGVHTVGIDNCTMSSSCLCEKPVCA", "length": 275 }, "evidence": [ { "id": "F1SQ30", "url": "https://omabrowser.org/oma/group/F1SQ30/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "F1SQ30", "url": "https://www.uniprot.org/uniprotkb/F1SQ30" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1SQ30", "url": "https://www.uniprot.org/uniprotkb/F1SQ30" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQ30", "url": "https://www.uniprot.org/uniprotkb/F1SQ30" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SQ30", "url": "https://www.uniprot.org/uniprotkb/F1SQ30" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 207, "end_pos": 209, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ30" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 161, "end_pos": 269, "start_aa": "Tyr", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 186, "end_pos": 188 }, { "start_pos": 207, "end_pos": 209 }, { "start_pos": 259, "end_pos": 261 }, { "start_pos": 3, "end_pos": 5 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ48-1", "uniprot_ac": "F1SQ48", "uniprot_id": "F1SQ48_PIG", "mass": { "chemical_mass": 35466.0, "monoisotopic_mass": 35466.0 }, "refseq": { "ac": "XP_003126547", "name": "taste receptor type 2 member 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126547" }, "gene_names": [ { "name": "TAS2R9", "type": "recommended", "evidence": [ { "id": "F1SQ48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ48" } ] }, { "name": "TAS2R9", "type": "synonym", "evidence": [ { "id": "XP_003126547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126547" } ] } ], "protein_names": [ { "name": "Taste receptor type 2", "type": "recommended", "evidence": [ { "id": "F1SQ48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ48/entry#names_and_taxonomy" } ] }, { "name": "taste receptor type 2 member 9", "type": "synonym", "evidence": [ { "id": "XP_003126547", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126547" } ] } ], "function": [ { "annotation": "Gustducin-coupled receptor implicated in the perception of bitter compounds in the oral cavity and the gastrointestinal tract. Signals through PLCB2 and the calcium-regulated cation channel TRPM5.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ48", "url": "https://www.uniprot.org/uniprotkb/F1SQ48#function" }, { "database": "UniProtKB", "id": "ARBA00025304", "url": "https://www.uniprot.org/uniprotkb/ARBA00025304#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ48", "url": "https://www.uniprot.org/uniprotkb/F1SQ48" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TAS2R9", "url": "https://www.uniprot.org/uniprotkb/F1SQ48", "locus": { "chromosome": "5", "start_pos": 61254863, "end_pos": 61253928, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000631", "url": "https://www.ensembl.org/id/ENSSSCG00000000631" } ] } } ], "crossref": [ { "id": "F1SQ48", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ48", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000631", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000631", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522867", "url": "https://www.ncbi.nlm.nih.gov/gene/100522867", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522867", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522867", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TIGIWGN", "url": "https://omabrowser.org/oma/group/TIGIWGN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQ48", "url": "https://www.orthodb.org/?gene=F1SQ48", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11394:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11394:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05296", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05296", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-420499", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420499", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126547", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126547", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQ48", "url": "https://www.uniprot.org/uniprotkb/F1SQ48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ48-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSAMETIYIIFITGELTVGIWGNGFIVLVNCTDWLKKRGISLIDIILVSLAVSRICLLSVMFSDGFVMVFYPDSYINGDVMGILDSLWTLTNHSSVWFTSCLSIFYLLKIASISHPFFLWLKLKINKVVLGILLVSFLMSLIISISLNDESWYDFKVSNKDNVTWEDKMSKISHAFKQIILNLAAFIPFILCLISFLLLLFSLFRHTKQMKLYATGSRDPSTEAHLRAIKAVIIFLVLFIMYYAVFLVVTASFLIPHGKLAVMFGGLITLIFPTSHSFILIMGNSKLREAFLKLLRIVKCFHKRRRHLVP", "length": 311, "header": "tr|F1SQ48-1|F1SQ48_PIG Isoform 1 of Taste receptor type 2 OS=Sus scrofa OX=9823 GN=TAS2R9 PE=3 SV=1 CANONICAL=F1SQ48-1" }, "isoforms": [ { "isoform_ac": "F1SQ48-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ48/entry#F1SQ48-1", "sequence": { "sequence": "MPSAMETIYIIFITGELTVGIWGNGFIVLVNCTDWLKKRGISLIDIILVSLAVSRICLLSVMFSDGFVMVFYPDSYINGDVMGILDSLWTLTNHSSVWFTSCLSIFYLLKIASISHPFFLWLKLKINKVVLGILLVSFLMSLIISISLNDESWYDFKVSNKDNVTWEDKMSKISHAFKQIILNLAAFIPFILCLISFLLLLFSLFRHTKQMKLYATGSRDPSTEAHLRAIKAVIIFLVLFIMYYAVFLVVTASFLIPHGKLAVMFGGLITLIFPTSHSFILIMGNSKLREAFLKLLRIVKCFHKRRRHLVP", "length": 311, "header": "tr|F1SQ48-1|F1SQ48_PIG Isoform 1 of Taste receptor type 2 OS=Sus scrofa OX=9823 GN=TAS2R9 PE=3 SV=1 CANONICAL=F1SQ48-1" }, "locus": { "chromosome": "5", "start_pos": 61254860, "end_pos": 61253928, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000678.2", "url": "https://www.ensembl.org/id/ENSSSCT00000000678.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000663.1", "url": "https://www.ensembl.org/id/ENSSSCP00000000663.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ48", "url": "https://www.uniprot.org/uniprotkb/F1SQ48" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522867", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522867", "resource": "KEGG Pathway" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-420499", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420499", "resource": "Reactome", "description": "Class C/3 (Metabotropic glutamate/pheromone receptors)" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9NYW1-1", "protein_name": "Taste receptor type 2 member 9", "gene_name": "TAS2R9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPSAIEAIYIILIAGELTIGIWGNGFIVLVNCIDWLKRRDISLIDIILISLAISRICLLCVISLDGFFMLLFPGTYGNSVLVSIVNVVWTFANNSSLWFTSCLSIFYLLKIANISHPFFFWLKLKINKVMLAILLGSFLISLIISVPKNDDMWYHLFKVSHEENITWKFKVSKIPGTFKQLTLNLGVMVPFILCLISFFLLLFSLVRHTKQIRLHATGFRDPSTEAHMRAIKAVIIFLLLLIVYYPVFLVMTSSALIPQGKLVLMIGDIVTVIFPSSHSFILIMGNSKLREAFLKMLRFVKCFLRRRKPFVP", "length": 312 }, "evidence": [ { "id": "F1SQ48", "url": "https://omabrowser.org/oma/group/F1SQ48/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SQ48", "url": "https://www.uniprot.org/uniprotkb/F1SQ48" } ], "pmid": "" }, { "name": "bitter taste receptor activity", "id": "GO:0033038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033038", "evidence": [ { "database": "UniProtKB", "id": "F1SQ48", "url": "https://www.uniprot.org/uniprotkb/F1SQ48" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SQ48", "url": "https://www.uniprot.org/uniprotkb/F1SQ48" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of bitter taste", "id": "GO:0001580", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001580", "evidence": [ { "database": "UniProtKB", "id": "F1SQ48", "url": "https://www.uniprot.org/uniprotkb/F1SQ48" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ48-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ48-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ48" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ48" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 281, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 31, "end_pos": 33 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ58-1", "uniprot_ac": "F1SQ58", "uniprot_id": "F1SQ58_PIG", "mass": { "chemical_mass": 100400.0, "monoisotopic_mass": 100400.0 }, "refseq": {}, "gene_names": [ { "name": "MUC13", "type": "recommended", "evidence": [ { "id": "F1SQ58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ58" } ] } ], "protein_names": [ { "name": "Mucin 13, cell surface associated", "type": "synonym", "evidence": [ { "id": "F1SQ58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ58/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ58", "url": "https://www.uniprot.org/uniprotkb/F1SQ58" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MUC13", "url": "https://www.uniprot.org/uniprotkb/F1SQ58", "locus": { "chromosome": "13", "start_pos": 135442691, "end_pos": 135412425, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011862", "url": "https://www.ensembl.org/id/ENSSSCG00000011862" } ] } } ], "crossref": [ { "id": "F1SQ58", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ58", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011862", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011862", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24037", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24037", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24037:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24037:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "R-SSC-913709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696264", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9696273", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-977068", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977068", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQ58", "url": "https://www.uniprot.org/uniprotkb/F1SQ58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ58-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKVFIHFTLLALLFLKSASTSTSNTTSTPTPTTTPTPHQPQLPPPHQPQLPPPHQPQLSPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLSPPHQPQLSPPHQLQLPPHQLPPPHQPQLPPHTNHNSHPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTLTPTPTTTLTPTPTTTLTPTPTTTPTPTPTTTLTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTLPPPHQPQLPPPHQPQLPPPHQPQLPPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNYNSHPHTNYNSHPTNSHPHTNHNSHPHTNHNSHPTPTTTPTPTPTTTPTPTPTTTLTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTLTPTPTTTLTPTPTTTPTPTPTTTPTIEATTTPTISGNTSTPASANASATSSTPTPSTATSGSRNPCQQDSCKGGSSCVSLNNTFFCLCSEGYYYNSSTCNKGKIFPGKITVKISETTDLEHENSVAYQNLYLQVTNFFNDTFSNSEYGQTVILKVSTTPSARYEMRASNQLVEVEVVNIFRETTTENESSIFNAIDQAIKSNPSDFTEYIQQDRCDYYGCKRQNEQDECPSGLLCECKEGLERPNPQIPLCVALGPACSDTCNAENNRQCLVRSAGNAECLCLPGYKEDKNKICQACPFGYSGVGCENPYRLILTIVGTIAGILILSLVIAFVLSLRSNNKNKNVEEQNLIENDFQNLKLQETGFSNLGAGNLFPKIKVDISRGGQPQNPYITQGSIPRPDY", "length": 925, "header": "tr|F1SQ58-1|F1SQ58_PIG Isoform 1 of Mucin 13, cell surface associated OS=Sus scrofa OX=9823 GN=MUC13 PE=1 SV=4 CANONICAL=F1SQ58-1" }, "isoforms": [ { "isoform_ac": "F1SQ58-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ58/entry#F1SQ58-1", "sequence": { "sequence": "MKVFIHFTLLALLFLKSASTSTSNTTSTPTPTTTPTPHQPQLPPPHQPQLPPPHQPQLSPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLPPPHQPQLSPPHQPQLSPPHQLQLPPHQLPPPHQPQLPPHTNHNSHPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTLTPTPTTTLTPTPTTTLTPTPTTTPTPTPTTTLTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTLPPPHQPQLPPPHQPQLPPPHQPQLPPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNHNSHPHTNYNSHPHTNYNSHPTNSHPHTNHNSHPHTNHNSHPTPTTTPTPTPTTTPTPTPTTTLTPTPTTTPTPTPTTTPTPTPTTTPTPTPTTTLTPTPTTTLTPTPTTTPTPTPTTTPTIEATTTPTISGNTSTPASANASATSSTPTPSTATSGSRNPCQQDSCKGGSSCVSLNNTFFCLCSEGYYYNSSTCNKGKIFPGKITVKISETTDLEHENSVAYQNLYLQVTNFFNDTFSNSEYGQTVILKVSTTPSARYEMRASNQLVEVEVVNIFRETTTENESSIFNAIDQAIKSNPSDFTEYIQQDRCDYYGCKRQNEQDECPSGLLCECKEGLERPNPQIPLCVALGPACSDTCNAENNRQCLVRSAGNAECLCLPGYKEDKNKICQACPFGYSGVGCENPYRLILTIVGTIAGILILSLVIAFVLSLRSNNKNKNVEEQNLIENDFQNLKLQETGFSNLGAGNLFPKIKVDISRGGQPQNPYITQGSIPRPDY", "length": 925, "header": "tr|F1SQ58-1|F1SQ58_PIG Isoform 1 of Mucin 13, cell surface associated OS=Sus scrofa OX=9823 GN=MUC13 PE=1 SV=4 CANONICAL=F1SQ58-1" }, "locus": { "chromosome": "13", "start_pos": 135442688, "end_pos": 135412459, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012975.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012975.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012633.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012633.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 202, "start_aa": "Thr", "end_pos": 202, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr202", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 210, "start_aa": "Thr", "end_pos": 210, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr210", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 218, "start_aa": "Thr", "end_pos": 218, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr218", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 226, "start_aa": "Thr", "end_pos": 226, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr226", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 234, "start_aa": "Thr", "end_pos": 234, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr234", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 242, "start_aa": "Thr", "end_pos": 242, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr242", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 250, "start_aa": "Thr", "end_pos": 250, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr250", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 258, "start_aa": "Thr", "end_pos": 258, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr258", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 266, "start_aa": "Thr", "end_pos": 266, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr266", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 274, "start_aa": "Thr", "end_pos": 274, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr274", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 282, "start_aa": "Thr", "end_pos": 282, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr282", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 290, "start_aa": "Thr", "end_pos": 290, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr290", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 298, "start_aa": "Thr", "end_pos": 298, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr298", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 306, "start_aa": "Thr", "end_pos": 306, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr306", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 314, "start_aa": "Thr", "end_pos": 314, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr314", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 478, "start_aa": "Thr", "end_pos": 478, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr478", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 486, "start_aa": "Thr", "end_pos": 486, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr486", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 494, "start_aa": "Thr", "end_pos": 494, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr494", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 502, "start_aa": "Thr", "end_pos": 502, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr502", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 510, "start_aa": "Thr", "end_pos": 510, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr510", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 518, "start_aa": "Thr", "end_pos": 518, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr518", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 526, "start_aa": "Thr", "end_pos": 526, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr526", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 534, "start_aa": "Thr", "end_pos": 534, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr534", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 542, "start_aa": "Thr", "end_pos": 542, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr542", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 563, "start_aa": "Thr", "end_pos": 563, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr563", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 577, "start_aa": "Thr", "end_pos": 577, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr577", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ58", "url": "https://www.uniprot.org/uniprotkb/F1SQ58" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-913709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "resource": "Reactome", "description": "O-linked glycosylation of mucins" }, { "id": "R-SSC-9696264", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696264", "resource": "Reactome", "description": "RND3 GTPase cycle" }, { "id": "R-SSC-9696270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696270", "resource": "Reactome", "description": "RND2 GTPase cycle" }, { "id": "R-SSC-9696273", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9696273", "resource": "Reactome", "description": "RND1 GTPase cycle" }, { "id": "R-SSC-977068", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977068", "resource": "Reactome", "description": "Termination of O-glycan biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQ58", "url": "https://www.uniprot.org/uniprotkb/F1SQ58" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" }, { "start_pos": 560, "end_pos": 562, "annotation": "n_glycosylation_sequon" }, { "start_pos": 568, "end_pos": 570, "annotation": "n_glycosylation_sequon" }, { "start_pos": 604, "end_pos": 606, "annotation": "n_glycosylation_sequon" }, { "start_pos": 618, "end_pos": 620, "annotation": "n_glycosylation_sequon" }, { "start_pos": 662, "end_pos": 664, "annotation": "n_glycosylation_sequon" }, { "start_pos": 710, "end_pos": 712, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ58-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 925, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ58-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ58" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ58" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 585, "end_pos": 623, "start_aa": "Ser", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQ58", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ58" }, { "id": "PS50024", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50024" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SEA", "eco_id": "ECO_0000259", "start_pos": 624, "end_pos": 739, "start_aa": "Lys", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 202, 210, 218, 226, 234, 242, 250, 258, 266, 274, 282, 290, 298, 306, 314, 478, 486, 494, 502, 510, 518, 526, 534, 542, 563, 577 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 24, "end_pos": 26 }, { "start_pos": 560, "end_pos": 562 }, { "start_pos": 568, "end_pos": 570 }, { "start_pos": 604, "end_pos": 606 }, { "start_pos": 618, "end_pos": 620 }, { "start_pos": 662, "end_pos": 664 }, { "start_pos": 710, "end_pos": 712 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 26 }, { "field": "total_sites", "count": 26 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 26 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 26 }, { "field": "exact_o_linked_sites", "count": 26 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 26 }, { "field": "total_sites", "count": 26 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 26 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 26 }, { "field": "exact_o_linked_sites", "count": 26 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ59-1", "uniprot_ac": "F1SQ59", "uniprot_id": "F1SQ59_PIG", "mass": { "chemical_mass": 77801.0, "monoisotopic_mass": 77801.0 }, "refseq": {}, "gene_names": [ { "name": "SLC12A8", "type": "recommended", "evidence": [ { "id": "F1SQ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ] } ], "protein_names": [ { "name": "Solute carrier family 12 member 8", "type": "recommended", "evidence": [ { "id": "F1SQ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ59/entry#names_and_taxonomy" } ] }, { "name": "Cation-chloride cotransporter 9", "type": "synonym", "evidence": [ { "id": "F1SQ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ59/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Cation/chloride cotransporter that may play a role in the control of keratinocyte proliferation.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59#function" }, { "database": "UniProtKB", "id": "ARBA00057496", "url": "https://www.uniprot.org/uniprotkb/ARBA00057496#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC12A8", "url": "https://www.uniprot.org/uniprotkb/F1SQ59", "locus": { "chromosome": "13", "start_pos": 135249120, "end_pos": 135105896, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011860", "url": "https://www.ensembl.org/id/ENSSSCG00000011860" } ] } } ], "crossref": [ { "id": "F1SQ59", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ59", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011860", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011860", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004842", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004842", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11827", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11827", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11827:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11827:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00324", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00324", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ59-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ59-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RAQMSQVQELFHEAAQQEALAQPQPWWKIQLFVWEPVLFGTWDGVFTSCMINIFGVVLFLRTGWLVGNTGMLMGMFLVSFVALVALVTVLSGIGVGEHCGVGSGGVYSMIASVLGGQTGGTIGLLYVFGQCVAGAMYITGFAESISDLLGLRNIWAVRGISVAVLLALLGINLAGVKWIIRLQLLLLLLLAVSTLDFVVGSFTHLDPEHGFIGYSPELLQNNTLPDYSPGESFFTVFGVFFPAATGVMAGFNMGGDLREPAASIPLGSLAAVGISWFLYIVFVFLLGAICSREALRYDFLIAEKVSLVGFLFLLGLYISSLASCMGGLYGAPRILQCIAQEKVIPTLACLGQGKGPNKTPVAAICLTSLVTMAFVLVGQVNVLAPIVTINFMLTYIAVDYSYFSLSMGACGLPRVPESAPGEGLGALNCSEHLLLEKVPHYGSEGVAQSLSEGTLLEFTKDMDQLLQLTRKLESNQPRGGESHGIPENQKGKTKKATKQTLQESFLLDLSSPASFTPEGSDGWPAASWERQEPYGDTQRPRSSEGTQPGGACGEQLVPEPSIQPRLSGEDFFLKSRLQEQDIQRRPTSFYTRICNPWISLLGVVGSLLIMFVIQWVYTLVNMGVAAIVYFYIGRTSPGLHLGLASNFSLFRWMRSLLIPSCRSLRPSQEQIILAPSLARVDMEMTQLTQENADFATRDRYHHSSLVSREQLMPRY", "length": 715, "header": "tr|F1SQ59-1|F1SQ59_PIG Isoform 1 of Solute carrier family 12 member 8 OS=Sus scrofa OX=9823 GN=SLC12A8 PE=3 SV=4 CANONICAL=F1SQ59-1" }, "isoforms": [ { "isoform_ac": "F1SQ59-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ59/entry#F1SQ59-1", "sequence": { "sequence": "RAQMSQVQELFHEAAQQEALAQPQPWWKIQLFVWEPVLFGTWDGVFTSCMINIFGVVLFLRTGWLVGNTGMLMGMFLVSFVALVALVTVLSGIGVGEHCGVGSGGVYSMIASVLGGQTGGTIGLLYVFGQCVAGAMYITGFAESISDLLGLRNIWAVRGISVAVLLALLGINLAGVKWIIRLQLLLLLLLAVSTLDFVVGSFTHLDPEHGFIGYSPELLQNNTLPDYSPGESFFTVFGVFFPAATGVMAGFNMGGDLREPAASIPLGSLAAVGISWFLYIVFVFLLGAICSREALRYDFLIAEKVSLVGFLFLLGLYISSLASCMGGLYGAPRILQCIAQEKVIPTLACLGQGKGPNKTPVAAICLTSLVTMAFVLVGQVNVLAPIVTINFMLTYIAVDYSYFSLSMGACGLPRVPESAPGEGLGALNCSEHLLLEKVPHYGSEGVAQSLSEGTLLEFTKDMDQLLQLTRKLESNQPRGGESHGIPENQKGKTKKATKQTLQESFLLDLSSPASFTPEGSDGWPAASWERQEPYGDTQRPRSSEGTQPGGACGEQLVPEPSIQPRLSGEDFFLKSRLQEQDIQRRPTSFYTRICNPWISLLGVVGSLLIMFVIQWVYTLVNMGVAAIVYFYIGRTSPGLHLGLASNFSLFRWMRSLLIPSCRSLRPSQEQIILAPSLARVDMEMTQLTQENADFATRDRYHHSSLVSREQLMPRY", "length": 715, "header": "tr|F1SQ59-1|F1SQ59_PIG Isoform 1 of Solute carrier family 12 member 8 OS=Sus scrofa OX=9823 GN=SLC12A8 PE=3 SV=4 CANONICAL=F1SQ59-1" }, "locus": { "chromosome": "13", "start_pos": 135248233, "end_pos": 135106575, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012973.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012973.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012632.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012632.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cell volume homeostasis", "id": "GO:0006884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006884", "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ], "pmid": "" }, { "name": "chloride transmembrane transport", "id": "GO:1902476", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902476", "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ], "pmid": "" }, { "name": "potassium ion homeostasis", "id": "GO:0055075", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055075", "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ], "pmid": "" }, { "name": "potassium ion import across plasma membrane", "id": "GO:1990573", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990573", "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ], "pmid": "" }, { "name": "chloride ion homeostasis", "id": "GO:0055064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055064", "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "potassium:chloride symporter activity", "id": "GO:0015379", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015379", "evidence": [ { "database": "UniProtKB", "id": "F1SQ59", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 428, "end_pos": 430, "annotation": "n_glycosylation_sequon" }, { "start_pos": 646, "end_pos": 648, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ59-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 715, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ59-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ59" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ59" }, { "id": "PF00324", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00324" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid permease/ SLC12A", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 397, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 221, "end_pos": 223 }, { "start_pos": 357, "end_pos": 359 }, { "start_pos": 428, "end_pos": 430 }, { "start_pos": 646, "end_pos": 648 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SU59-1", "uniprot_ac": "F1SU59", "uniprot_id": "F1SU59_PIG", "mass": { "chemical_mass": 49851.0, "monoisotopic_mass": 49851.0 }, "refseq": {}, "gene_names": [ { "name": "ANXA7", "type": "recommended", "evidence": [ { "id": "F1SU59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ] } ], "protein_names": [ { "name": "Annexin", "type": "recommended", "evidence": [ { "id": "F1SU59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU59/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Calcium/phospholipid-binding protein which promotes membrane fusion and is involved in exocytosis.", "evidence": [ { "database": "UniProtKB", "id": "I3LEY2", "url": "https://www.uniprot.org/uniprotkb/I3LEY2#function" }, { "database": "UniProtKB", "id": "ARBA00037210", "url": "https://www.uniprot.org/uniprotkb/ARBA00037210#function" }, { "database": "UniProtKB", "id": "A0A8W4FKL7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKL7#function" }, { "database": "UniProtKB", "id": "A0A5G2R850", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R850#function" }, { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANXA7", "url": "https://www.uniprot.org/uniprotkb/F1SU59", "locus": { "chromosome": "14", "start_pos": 76205232, "end_pos": 76234631, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010299", "url": "https://www.ensembl.org/id/ENSSSCG00000010299" } ] } } ], "crossref": [ { "id": "F1SU59", "url": "https://alphafold.ebi.ac.uk/entry/F1SU59", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010299", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010299", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001464", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001464", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037104", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037104", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10502", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10502", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10502:SF239", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10502:SF239", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R850", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R850", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R850-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R850-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKL7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU59-1", "url": "https://www.uniprot.org/uniprotkb/F1SU59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LEY2", "url": "https://www.uniprot.org/uniprotkb/I3LEY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LEY2-1", "url": "https://www.uniprot.org/uniprotkb/I3LEY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSYPGYTPTGYPPFPGYPPAGQESSFPPPGQYPYPSGFPPMGGGAYPPAPSSGYPGAGGYPAPGGYPAPGGYPGAPQPGGAPSYPGVLPGQGFGAPPGGAGFSGYPQPPSQSYGGGPAQVPVPGGFPGGPMPSQYPGGQTPYPSQLATVAQGTIRPAANFDAMRDAEILRKAMKGFGTDEQAIIDVVANRSNDQRQKIKAAFKTMYGKDLIKDLKSELSGNMEELILALFMPSTYYDAWSLRNAMKGAGTQERVLIEILCTRTNQEIREIVRCYQSEFGRDLEKDIRSDTSGHFERLLVSMCQGNRDENQNVNPQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFPQLKATMEAYSRMANRDLLSSVGREFSGNVESGLKTILQCALNRPAFFAERLYYSMKGAGTDDSTLVRIVVTRSEIDLVQIKQMFSQMYQKTLGTMIASDTSGDYRRLLLAIVGQ", "length": 463, "header": "tr|F1SU59-1|F1SU59_PIG Isoform 1 of Annexin OS=Sus scrofa OX=9823 GN=ANXA7 PE=1 SV=4 CANONICAL=F1SU59-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R850-1", "url": "https://www.uniprot.org/uniprotkb/F1SU59/entry#A0A5G2R850-1", "sequence": { "sequence": "MSHPPAGQESSFPPPGQYPYPSGFPPMGGGAYPPAPSSGYPGAGGYPAPGGYPAPGGYPGAPQPGGAPSYPGGQGFGAPPGGAGFSGYPQPPSQSYGGGPAQVPVPGGFPGGPMPSQYPGGQTPYPSQISTESFPSYPVFSPISLDYSSELATVAQGTIRPAANFDAMRDAEILRKAMKGFGTDEQAIIDVVANRSNDQRQKIKAAFKTMYGKDLIKDLKSELSGNMEELILALFMPSTYYDAWSLRNAMKGAGTQERVLIEILCTRTNQEIREIVRCYQSEFGRDLEKDIRSDTSGHFERLLVSMCQGNRDENQNVNPQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFPQLKATMEAYSRMANRDLLSSVGREFSGNVESGLKTILQCALNRPAFFAERLYYSMKGAGTDDSTLVRIVVTRSEIDLVQIKQMFSQMYQKTLGTMIASDTSGDYRRLLLAIVGQ", "length": 468, "header": "tr|A0A5G2R850-1|F1SU59_PIG Computationally mapped isoform of Annexin OS=Sus scrofa OX=9823 GN=ANXA7 PE=1 SV=2 CANONICAL=F1SU59-1" }, "locus": { "chromosome": "14", "start_pos": 76229457, "end_pos": 76205604, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080494.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080494.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070292.2", "url": "https://www.ensembl.org/id/ENSSSCP00000070292.2" } ] } }, { "isoform_ac": "A0A8W4FKL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SU59/entry#A0A8W4FKL7-1", "sequence": { "sequence": "MFLNDHIHLNNFPVFQPAGQESSFPPPGQYPYPSGFPPMGGGAYPPAPSSGYPGAGGYPAPGGYPAPGGYPGAPQPGGAPSYPGGQGFGAPPGGAGFSGYPQPPSQSYGGGPAQVPVPGGFPGGPMPSQYPGGQTPYPSQISTESFPSYPVFSPISLDYSSELATVAQGTIRPAANFDAMRDAEILRKAMKGFGKENIFFTYTYFLSGNMEELILALFMPSTYYDAWSLRNAMKGAGTQERVLIEILCTRTNQEIREIVRCYQSEFGRDLEKDIRSDTSGHFERLLVSMCQGNRDENQNVNPQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFPQLKATMEAYSRMANRDLLSSVGREFSGNVESGLKTILQCALNRPAFFAERLYYSMKGAGTDDSTLVRIVVTRSEIDLVQIKQMFSQMYQKTLGTMIASDTSGDYRRLLLAIVGQ", "length": 451, "header": "tr|A0A8W4FKL7-1|F1SU59_PIG Computationally mapped isoform of Annexin OS=Sus scrofa OX=9823 GN=ANXA7 PE=1 SV=1 CANONICAL=F1SU59-1" }, "locus": { "chromosome": "14", "start_pos": 76228788, "end_pos": 76205604, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094842.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094842.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079874.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079874.1" } ] } }, { "isoform_ac": "F1SU59-1", "url": "https://www.uniprot.org/uniprotkb/F1SU59/entry#F1SU59-1", "sequence": { "sequence": "MSYPGYTPTGYPPFPGYPPAGQESSFPPPGQYPYPSGFPPMGGGAYPPAPSSGYPGAGGYPAPGGYPAPGGYPGAPQPGGAPSYPGVLPGQGFGAPPGGAGFSGYPQPPSQSYGGGPAQVPVPGGFPGGPMPSQYPGGQTPYPSQLATVAQGTIRPAANFDAMRDAEILRKAMKGFGTDEQAIIDVVANRSNDQRQKIKAAFKTMYGKDLIKDLKSELSGNMEELILALFMPSTYYDAWSLRNAMKGAGTQERVLIEILCTRTNQEIREIVRCYQSEFGRDLEKDIRSDTSGHFERLLVSMCQGNRDENQNVNPQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFPQLKATMEAYSRMANRDLLSSVGREFSGNVESGLKTILQCALNRPAFFAERLYYSMKGAGTDDSTLVRIVVTRSEIDLVQIKQMFSQMYQKTLGTMIASDTSGDYRRLLLAIVGQ", "length": 463, "header": "tr|F1SU59-1|F1SU59_PIG Isoform 1 of Annexin OS=Sus scrofa OX=9823 GN=ANXA7 PE=1 SV=4 CANONICAL=F1SU59-1" }, "locus": { "chromosome": "14", "start_pos": 76230839, "end_pos": 76205604, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011272.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011272.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010980.4", "url": "https://www.ensembl.org/id/ENSSSCP00000010980.4" } ] } }, { "isoform_ac": "I3LEY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SU59/entry#I3LEY2-1", "sequence": { "sequence": "MSYPGYTPTGYPPFPGYPPAGQESSFPPPGQYPYPSGFPPMGGGAYPPAPSSGYPGAGGYPAPGGYPAPGGYPGAPQPGGAPSYPGVLPGQGFGAPPGGAGFSGYPQPPSQSYGGGPAQVPVPGGFPGGPMPSQYPGGQTPYPSQISTESFPSYPVFSPISLDYSSELATVAQGTIRPAANFDAMRDAEILRKAMKGFGTDEQAIIDVVANRSNDQRQKIKAAFKTMYGKDLIKDLKSELSGNMEELILALFMPSTYYDAWSLRNAMKGAGTQERVLIEILCTRTNQEIREIVRCYQSEFGRDLEKDIRSDTSGHFERLLVSMCQGNRDENQNVNPQMAQEDAQRLYQAGEGRLGTDESCFNMILATRSFPQLKATMEAYSRMANRDLLSSVGREFSGNVESGLKTILQCALNRPAFFAERLYYSMKGAGTDDSTLVRIVVTRSEIDLVQIKQMFSQMYQKTLGTMIASDTSGDYRRLLLAIVGQ", "length": 485, "header": "tr|I3LEY2-1|F1SU59_PIG Computationally mapped isoform of Annexin OS=Sus scrofa OX=9823 GN=ANXA7 PE=1 SV=3 CANONICAL=F1SU59-1" }, "locus": { "chromosome": "14", "start_pos": 76230839, "end_pos": 76205604, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027928.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027928.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022621.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022621.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LEY2", "url": "https://www.uniprot.org/uniprotkb/I3LEY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "integrin binding", "id": "GO:0005178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005178", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "calcium-dependent protein binding", "id": "GO:0048306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048306", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "phosphatidylserine binding", "id": "GO:0001786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001786", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "chromaffin granule membrane", "id": "GO:0042584", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042584", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "vesicle membrane", "id": "GO:0012506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012506", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of gene expression", "id": "GO:0010629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010629", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" }, { "name": "autophagy", "id": "GO:0006914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006914", "evidence": [ { "database": "UniProtKB", "id": "F1SU59", "url": "https://www.uniprot.org/uniprotkb/F1SU59" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 189, "end_pos": 191, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SU59-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 463, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SU59-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SU59" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 189, "end_pos": 191 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSW0-1", "uniprot_ac": "F1SSW0", "uniprot_id": "F1SSW0_PIG", "mass": { "chemical_mass": 163351.0, "monoisotopic_mass": 163351.0 }, "refseq": {}, "gene_names": [ { "name": "MAPKBP1", "type": "recommended", "evidence": [ { "id": "F1SSW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" } ] } ], "protein_names": [ { "name": "Mitogen-activated protein kinase-binding protein 1", "type": "recommended", "evidence": [ { "id": "F1SSW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW0/entry#names_and_taxonomy" } ] }, { "name": "JNK-binding protein 1", "type": "synonym", "evidence": [ { "id": "F1SSW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Negative regulator of NOD2 function. It down-regulates NOD2-induced processes such as activation of NF-kappa-B signaling, IL8 secretion and antibacterial response. Involved in JNK signaling pathway.", "evidence": [ { "database": "UniProtKB", "id": "F1SSW0", "url": "https://www.uniprot.org/uniprotkb/F1SSW0#function" }, { "database": "UniProtKB", "id": "ARBA00055735", "url": "https://www.uniprot.org/uniprotkb/ARBA00055735#function" }, { "database": "UniProtKB", "id": "F1SSW7", "url": "https://www.uniprot.org/uniprotkb/F1SSW7#function" }, { "database": "UniProtKB", "id": "A0ABB5UQD9", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQD9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSW0", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAPKBP1", "url": "https://www.uniprot.org/uniprotkb/F1SSW0", "locus": { "chromosome": "1", "start_pos": 129532097, "end_pos": 129588095, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004738", "url": "https://www.ensembl.org/id/ENSSSCG00000004738" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004738", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004738", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055292", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055292", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44813", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44813", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44813:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44813:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24795", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24795", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZZB3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQD9", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQD9-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSW0", "url": "https://www.uniprot.org/uniprotkb/F1SSW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSW0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSW7", "url": "https://www.uniprot.org/uniprotkb/F1SSW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMAVEGSTITSRIKNLLRSPSIKLRRSKAGNRREDLSSKVTLEKVLGITVSGGRGLACDPRSGLVAYPAGCVVVLFNPRKHKQHHILNSSRKTITALAFSPDGKYLVTGESGHMPAVRVWDVAEHSQVAELQEHKYGVACVAFSPSAKYIVSVGYQHDMIVNVWAWKKNIVVASNKVSSRVTAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRSGLLGELRNNLFTDVACGRGKKADSTFCITSSGLLCEFSDRRLLDKWVELRTTVAHCISVSQDYIFCGCADGTVRLFNPSNLHFLSTLPRPHALGTDIASVTEASRLFSGVANARYPDTIALTFDPTNQWLSCVYNDHSIYVWDVRDPKKVGKVYSALYHSSCVWSVEVYPEVKDSNQACLPPSSFITCSSDNTIRLWNIESSGVHGSTLHRNILSNDLIKIIYVDGNTQALVDTELPGGDKADGSLMDPRVGIRSVCVSPNGQHLASGDRVGTLRVHELQSLNEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGDGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRNIRIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEIVTGMKFSNDCKHLISVSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGAKQQGPSSPQRAAGPHRPRHKAPSVLSPGPTLSSDSDKEGEDEGTEEEELPALPILAKGTRKEPALVPSPALPRSLSHWEMWAQETEEFLDPAPAANQGPRRRGRWAQPGVELSVRSMLDLRQLETLVPNPRGPSQDSVAVTPPGLGNNGQQAPESSRASQDEKPPRPQASQPCSCPHIIQLLSQEEGVFAQDLEPAPMEDGIVYPEPSDSPTLDTSEFQVQAPVRGALGRVYPGSRASEKHSPDSACSVDFSSSRLSSPEHPTEDSESTEPLSVDGISSDLEEPAEGDEEEEEEEGGPGPYGLQEGSPRTPDQEQFLKQHFETLANGAAPGGPVRVAERTESRSISSRFLLQVQTPPLRELSPPSSSLAQTLRPVQVPRTPDEQRRGNGASPPGAPPEAGPSPGNPGLQQAAPVLLPRRRLNLDSSWAPKRVATTTSSGGLQKAQSVQSLVPQDEAPPPGPWLLQEMEAQGRLRSLPHTDGRLSRPRSYQNPTTSSMAKISRSISVGENLSLAAEPQAPAPVRVSAVSKLSLPSRAHLVLDIPKPLPDRPTLATFSPVTKGRAPGEAEQPGSPVGLGKTHSTSERQACLGEGATPKPRTECPAQPGPNSPRAQQLPVSSLLRGPENFQPPPPEKTPSPMECTRPGAALSWDSEPAVSLEQCEQLVAELQGSVHQAVRLYHLVASCKTPSAEQSRMTQLLRNTFSSVRQELEGLAGAVMSSPAGSPGAVGAEQTQALLEQYSELLLRAVERRMERRL", "length": 1505, "header": "tr|F1SSW0-1|F1SSW0_PIG Isoform 1 of Mitogen-activated protein kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=MAPKBP1 PE=4 SV=6 CANONICAL=F1SSW0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW0/entry#A0A286ZZB3-1", "sequence": { "sequence": "MMAVEGSTITSRIKNLLRSPSIKLRRSKAGNRREDLSSKVTLEKVLGITVSGGRGLACDPRSGLVAYPAGCVVVLFNPRKHKQHHILNSSRKTITALAFSPDGKYLVTGESGHMPAVRVWDVAEHSQVAELQEHKYGVACVAFSPSAKYIVSVGYQHDMIVNVWAWKKNIVVASNKVSSRVTAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRSGLLGELRNNLFTDVACGRGKKADSTFCITSSGLLCEFSDRRLLDKWVELRTTVAHCISVSQDYIFCGCADGTVRLFNPSNLHFLSTLPRPHALGTDIASVTEASRLFSGVANARYPDTIALTFDPTNQWLSCVYNDHSIYVWDVRDPKKVGKVYSALYHSSCVWSVEDLIKIIYVDGNTQALVDTELPGGDKADGSLMDPRVGIRSVCVSPNGQHLASGDRVGTLRVHELQSLNEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGDGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRNIRIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEIVTGMKFSNDCKHLISVSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGAKQQGPSSPQRAAGPHRPRHKAPSVLSPGPTLSSDSDKEGEDEGTEEEELPALPILAKGTRKEPALVPSPALPRSLSHWEMWAQETEEFLDPAPAANQGPRRRGRWAQPGVELSVRSMLDLRQLETLVPNPRGPSQDSVAVTPPGLGNNGQQAPESSRASQDEKPPRPQASQPCSCPHIIQLLSQEEGVFAQDLEPAPMEDGIVYPEPSDSPTLDTSEFQVQAPVRGALGRVYPGSRASEKHSPDSACSVDFSSSRLSSPEHPTEDSESTEPLSVDGISSDLEEPAEGDEEEEEEEGGPGPYGLQEGSPRTPDQEQFLKQHFETLANGAAPGGPVRVAERTESRSISSRFLLQVQTPPLRELSPPSSSLAQTLRPVQVPRTPDEQRRGNGASPPGAPPEAGPSPGNPGLQQAAPVLLPRRRLNLDSSWAPKRVATTTSSGGLQKAQSVQSLVPQDEAPPPGPWLLQEMEAQGRLRSLPHTDGRLSRPRSYQNPTTSSMAKISRSISVGENLSLAAEPQAPAPVRVSAVSKLSLPSRAHLVLDIPKPLPDRPTLATFSPVTKGRAPGEAEQPGSPVGLGKTHSTSERQACLGEGATPKPRTECPAQPGPNSPRAQQLPVSSLLRGPENFQPPPPEKTPSPMECTRPGAALSWDSEPAVSLEQCEQLVAELQGSVHQAVRLYHLVASCKTPSAEQSRMTQLLRNTFSSVRQELEGLAGAVMSSPAGSPGAVGAEQTQALLEQYSELLLRAVERRMERRL", "length": 1456, "header": "tr|A0A286ZZB3-1|F1SSW0_PIG Computationally mapped isoform of Mitogen-activated protein kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=MAPKBP1 PE=4 SV=4 CANONICAL=F1SSW0-1" }, "locus": { "chromosome": "1", "start_pos": 129587298, "end_pos": 129535728, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064208.4", "url": "https://www.ensembl.org/id/ENSSSCT00000064208.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036807.4", "url": "https://www.ensembl.org/id/ENSSSCP00000036807.4" } ] } }, { "isoform_ac": "A0ABB5UQD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW0/entry#A0ABB5UQD9-1", "sequence": { "sequence": "MMAVEGSTITSRIKNLLRSPSIKLRRSKAGNRREDLSSKVTLEKVLGITVSGGRGLACDPRSGLVAYPAGCVVVLFNPRKHKQHHILNSSRKTITALAFSPDGKYLVTGESGHMPAVRVWDVAEHSQVAELQEHKYGVACVAFSPSAKYIVSVGYQHDMIVNVWAWKKNIVVASNKVSSRVTAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRSGLLGELRNNLFTDVACGRGKKADSTFCITSSGLLCEFSDRRLLDKWVELRTTVAHCISVSQDYIFCGCADGTVRLFNPSNLHFLSTLPRPHALGTDIASVTEASRLFSGVANARYPDTIALTFDPTNQWLSCVYNDHSIYVWDVRDPKKVGKVYSALYHSSCVWSVEVYPEVKDSNQACLPPSSFITCSSDNTIRLWNIESSGVHGSTLHRNILSNDLIKIIYVDGNTQALVDTELPGGDKADGSLMDPRVGIRSVCVSPNGQHLASGDRVGTLRVHELQSLNEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGDGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRNIRIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEIVTGMKFSNDCKHLISVSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGAKQQGPSSPQRAAGPHRPRHKAPSVLSPGPTLSSDSDKEGEDEGTEEEELPALPILAKGTRKEPALVPSPALPRSLSHWEMWAQETEEFLDPAPAANQGPRRRGRWAQPGVELSVRSMLDLRQLETLVPNPRGPSQDSVAVTPPGLGNNGQQAPESSRASQDEKPPRPQASQPCSCPHIIQLLSQEEGVFAQDLEPAPMEDGIVYPEPSDSPTLDTSEFQVQAPVRGALGRVYPGSRASEKHSPDSACSVDFSSSRLSSPEHPTEDLEEPAEGDEEEEEEEGGPGPYGLQEGSPRTPDQEQFLKQHFETLANGAAPGGPVRVAERTESRSISSRFLLQVQTPPLRELSPPSSSLAQTLRPVQVPRTPDEQRRGNGASPPGAPPEAGPSPGNPGLQQAAPVLLPRRRLNLDSSWAPKRVATTTSSGGLQKAQSVQSLVPQDEAPPPGPWLLQEMEAQGRLRSLPHTDGRLSRPRSYQNPTTSSMAKISRSISVGENLSLAAEPQAPAPVRVSAVSKLSLPSRAHLVLDIPKPLPDRPTLATFSPVTKGRAPGEAEQPGSPVGLGKTHSTSERQACLGEGATPKPRTECPAQPGPNSPRAQQLPVSSLLRGPENFQPPPPEKTPSPMECTRPGAALSWDSEPAVSLEQCEQLVAELQGSVHQAVRLYHLVASCKTPSAEQSRMTQLLRNTFSSVRQELEGLAGAVMSSPAGSPGAVGAEQTQALLEQYSELLLRAVERRMERRL", "length": 1490, "header": "tr|A0ABB5UQD9-1|A0ABB5UQD9_PIG Computationally mapped isoform of Mitogen-activated protein kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=MAPKBP1 PE=4 SV=1 CANONICAL=F1SSW0-1" }, "locus": { "chromosome": "1", "start_pos": 129587298, "end_pos": 129535728, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107639.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107639.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000082032.1", "url": "https://www.ensembl.org/id/ENSSSCP00000082032.1" } ] } }, { "isoform_ac": "F1SSW0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW0/entry#F1SSW0-1", "sequence": { "sequence": "MMAVEGSTITSRIKNLLRSPSIKLRRSKAGNRREDLSSKVTLEKVLGITVSGGRGLACDPRSGLVAYPAGCVVVLFNPRKHKQHHILNSSRKTITALAFSPDGKYLVTGESGHMPAVRVWDVAEHSQVAELQEHKYGVACVAFSPSAKYIVSVGYQHDMIVNVWAWKKNIVVASNKVSSRVTAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRSGLLGELRNNLFTDVACGRGKKADSTFCITSSGLLCEFSDRRLLDKWVELRTTVAHCISVSQDYIFCGCADGTVRLFNPSNLHFLSTLPRPHALGTDIASVTEASRLFSGVANARYPDTIALTFDPTNQWLSCVYNDHSIYVWDVRDPKKVGKVYSALYHSSCVWSVEVYPEVKDSNQACLPPSSFITCSSDNTIRLWNIESSGVHGSTLHRNILSNDLIKIIYVDGNTQALVDTELPGGDKADGSLMDPRVGIRSVCVSPNGQHLASGDRVGTLRVHELQSLNEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGDGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRNIRIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEIVTGMKFSNDCKHLISVSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGAKQQGPSSPQRAAGPHRPRHKAPSVLSPGPTLSSDSDKEGEDEGTEEEELPALPILAKGTRKEPALVPSPALPRSLSHWEMWAQETEEFLDPAPAANQGPRRRGRWAQPGVELSVRSMLDLRQLETLVPNPRGPSQDSVAVTPPGLGNNGQQAPESSRASQDEKPPRPQASQPCSCPHIIQLLSQEEGVFAQDLEPAPMEDGIVYPEPSDSPTLDTSEFQVQAPVRGALGRVYPGSRASEKHSPDSACSVDFSSSRLSSPEHPTEDSESTEPLSVDGISSDLEEPAEGDEEEEEEEGGPGPYGLQEGSPRTPDQEQFLKQHFETLANGAAPGGPVRVAERTESRSISSRFLLQVQTPPLRELSPPSSSLAQTLRPVQVPRTPDEQRRGNGASPPGAPPEAGPSPGNPGLQQAAPVLLPRRRLNLDSSWAPKRVATTTSSGGLQKAQSVQSLVPQDEAPPPGPWLLQEMEAQGRLRSLPHTDGRLSRPRSYQNPTTSSMAKISRSISVGENLSLAAEPQAPAPVRVSAVSKLSLPSRAHLVLDIPKPLPDRPTLATFSPVTKGRAPGEAEQPGSPVGLGKTHSTSERQACLGEGATPKPRTECPAQPGPNSPRAQQLPVSSLLRGPENFQPPPPEKTPSPMECTRPGAALSWDSEPAVSLEQCEQLVAELQGSVHQAVRLYHLVASCKTPSAEQSRMTQLLRNTFSSVRQELEGLAGAVMSSPAGSPGAVGAEQTQALLEQYSELLLRAVERRMERRL", "length": 1505, "header": "tr|F1SSW0-1|F1SSW0_PIG Isoform 1 of Mitogen-activated protein kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=MAPKBP1 PE=4 SV=6 CANONICAL=F1SSW0-1" }, "locus": { "chromosome": "1", "start_pos": 129587298, "end_pos": 129535728, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096859.2", "url": "https://www.ensembl.org/id/ENSSSCT00000096859.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077666.2", "url": "https://www.ensembl.org/id/ENSSSCP00000077666.2" } ] } }, { "isoform_ac": "F1SSW7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW0/entry#F1SSW7-1", "sequence": { "sequence": "MMAVEGSTITSRIKNLLRSPSIKLRRSKAGNRREDLSSKVTLEKVLGITVSGGRGLACDPRSGLVAYPAGCVVVLFNPRKHKQHHILNSSRKTITALAFSPDGKYLVTGESGHMPAVRVWDVAEHSQVAELQEHKYGVACVAFSPSAKYIVSVGYQHDMIVNVWAWKKNIVVASNKVSSRVTAVSFSEDCSYFVTAGNRHIKFWYLDDSKTSKVNATVPLLGRSGLLGELRNNLFTDVACGRGKKADSTFCITSSGLLCEFSDRRLLDKWVELRTTVAHCISVSQDYIFCGCADGTVRLFNPSNLHFLSTLPRPHALGTDIASVTEASRLFSGVANARYPDTIALTFDPTNQWLSCVYNDHSIYVWDVRDPKKVGKVYSALYHSSCVWSVEVYPEVKDSNQACLPPSSFITCSSDNTIRLWNIESSGVHGSTLHRNILSNDLIKIIYVDGNTQALVDTELPGGDKADGSLMDPRVGIRSVCVSPNGQHLASGDRVGTLRVHELQSLNEMLKVEAHDSEILCLEYSKPDTGLKLLASASRDRLIHVLDAGREYSLQQTLDEHSSSITAVKFAASDGQVRMISCGADKSIYFRTAQKSGDGVQFTRTHHVVRKTTLYDMDVEPSWKYTAIGCQDRNIRIFNISSGKQKKLFKGSQGEDGTLIKVQTDPSGIYIATSCSDKNLSIFDFSSGECVATMFGHSEIVTGMKFSNDCKHLISVSGDSCIFVWRLSSEMTISMRQRLAELRQRQRGAKQQGPSSPQRAAGPHRPRHKAPSVLSPGPTLSSDSDKEGEDEGTEEEELPALPILAKGTRKEPALVPSPALPRSLSHWEMWAQETEEFLDPAPAANQGPRRRGRWAQPGVELSVRSMLDLRQLETLVPNPRGPSQDSVAVTPPGLGNNGQQAPESSRASQDEKPPRPQASQPCSCPHIIQLLSQEEGVFAQDLEPAPMEDGIVYPEPSDSPTLDTSEFQVQAPVRGALGRVYPGSRASEKHSPDSACSVDFSSSRLSSPEHPTEDSESTEPLSVDGISSDLEEPAEGDEEEEEEEGGPGPYGLQEGSPRTPDQEQFLKQHFETLANGAAPGGPVRVAERTESRSISSRFLLQVQTPPLRELSPPSSSLAQTLRPVQVPRTPDEQRRGNGASPPGAPPEAGPSPGNPGLQQAAPVLLPRRRLNLDSSWAPKRVATTTSSGGLQKAQSVQSLVPQDEAPPPGPWLLQEMEAQGRLRSLPHTDGRLSRPRSYQNPTTSSMAKISRSISVGENLSLAAEPQAPAPVRVSAVSKLSLPSRAHLVLDIPKPLPDRPTLATFSPVTKGRAPEPAVSLEQCEQLVAELQGSVHQAVRLYHLVASCKTPSAEQSRMTQLLRNTFSSVRQELEGLAGAVMSSPAGSPGAVGAEQTQALLEQYSELLLRAVERRMERRL", "length": 1417, "header": "tr|F1SSW7-1|F1SSW0_PIG Computationally mapped isoform of Mitogen-activated protein kinase-binding protein 1 OS=Sus scrofa OX=9823 GN=MAPKBP1 PE=4 SV=6 CANONICAL=F1SSW0-1" }, "locus": { "chromosome": "1", "start_pos": 129587298, "end_pos": 129535728, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005234.6", "url": "https://www.ensembl.org/id/ENSSSCT00000005234.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005108.6", "url": "https://www.ensembl.org/id/ENSSSCP00000005108.6" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 195, "start_aa": "Thr", "end_pos": 195, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr195", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 779, "start_aa": "Thr", "end_pos": 779, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr779", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 890, "start_aa": "Thr", "end_pos": 890, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr890", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSW7", "url": "https://www.uniprot.org/uniprotkb/F1SSW7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "F1SSW0", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSW0", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SSW0", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of JNK cascade", "id": "GO:0046330", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046330", "evidence": [ { "database": "UniProtKB", "id": "F1SSW0", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" } ], "pmid": "" }, { "name": "negative regulation of canonical NF-kappaB signal transduction", "id": "GO:0043124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043124", "evidence": [ { "database": "UniProtKB", "id": "F1SSW0", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" } ], "pmid": "" }, { "name": "regulation of intracellular signal transduction", "id": "GO:1902531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902531", "evidence": [ { "database": "UniProtKB", "id": "F1SSW0", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1258, "end_pos": 1260, "annotation": "n_glycosylation_sequon" }, { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" }, { "start_pos": 639, "end_pos": 641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 679, "end_pos": 681, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" }, { "id": "PF24780", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24780" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MABP1/WDR62 first WD40", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 381, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" }, { "id": "PF24782", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24782" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MABP1/WDR62 second WD40", "eco_id": "ECO_0000259", "start_pos": 387, "end_pos": 727, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW0" }, { "id": "PF24795", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24795" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MABP1/WRD62 coiled-coil", "eco_id": "ECO_0000259", "start_pos": 1404, "end_pos": 1499, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 195, 779, 890 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1258, "end_pos": 1260 }, { "start_pos": 215, "end_pos": 217 }, { "start_pos": 639, "end_pos": 641 }, { "start_pos": 679, "end_pos": 681 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z546-1", "uniprot_ac": "F2Z546", "uniprot_id": "F2Z546_PIG", "mass": { "chemical_mass": 29595.0, "monoisotopic_mass": 29595.0 }, "refseq": {}, "gene_names": [ { "name": "RPL19", "type": "recommended", "evidence": [ { "id": "F2Z546", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z546" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein eL19", "type": "recommended", "evidence": [ { "id": "F2Z546", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z546/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L19", "type": "synonym", "evidence": [ { "id": "F2Z546", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z546/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FIL7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIL7#function" }, { "database": "UniProtKB", "id": "ARBA00034092", "url": "https://www.uniprot.org/uniprotkb/ARBA00034092#function" }, { "database": "UniProtKB", "id": "F2Z546", "url": "https://www.uniprot.org/uniprotkb/F2Z546#function" }, { "database": "UniProtKB", "id": "A0A8W4FNK1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNK1#function" }, { "database": "UniProtKB", "id": "A0A286ZL26", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL26#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z546", "url": "https://www.uniprot.org/uniprotkb/F2Z546" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPL19", "url": "https://www.uniprot.org/uniprotkb/F2Z546", "locus": {} } ], "crossref": [ { "id": "F2Z546", "url": "https://alphafold.ebi.ac.uk/entry/F2Z546", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017509", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017509", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01417", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01417", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "3J7O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "3J7P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR000196", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000196", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033935", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033935", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039547", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039547", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057260", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057260", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10722", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10722", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00003j7o", "url": "https://www.rcsb.org/structure/pdb_00003j7o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00003j7p", "url": "https://www.rcsb.org/structure/pdb_00003j7p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7O", "url": "https://www.rcsb.org/structure/3J7O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7P", "url": "https://www.rcsb.org/structure/3J7P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF01280", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01280", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25476", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25476", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZL26", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZL26-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZL26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIL7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNK1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z546", "url": "https://www.uniprot.org/uniprotkb/F2Z546", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z546-1", "url": "https://www.uniprot.org/uniprotkb/F2Z546-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWVVAKALTKIWIQGRFLIWRCHCGWQKPGAGETCLSLVLNAHTSISCGIFHIRRLWRAEKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK", "length": 250, "header": "tr|F2Z546-1|F2Z546_PIG Isoform 1 of Large ribosomal subunit protein eL19 OS=Sus scrofa OX=9823 GN=RPL19 PE=1 SV=4 CANONICAL=F2Z546-1" }, "isoforms": [ { "isoform_ac": "A0A286ZL26-1", "url": "https://www.uniprot.org/uniprotkb/F2Z546/entry#A0A286ZL26-1", "sequence": { "sequence": "SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK", "length": 175, "header": "tr|A0A286ZL26-1|F2Z546_PIG Computationally mapped isoform of Large ribosomal subunit protein eL19 OS=Sus scrofa OX=9823 GN=RPL19 PE=1 SV=1 CANONICAL=F2Z546-1" }, "locus": { "chromosome": "12", "start_pos": 23033253, "end_pos": 23029452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066245.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066245.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032258.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032258.2" } ] } }, { "isoform_ac": "A0A8W4FIL7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z546/entry#A0A8W4FIL7-1", "sequence": { "sequence": "MGMLLAQEWFPGPDSVFCLFSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK", "length": 215, "header": "tr|A0A8W4FIL7-1|F2Z546_PIG Computationally mapped isoform of Large ribosomal subunit protein eL19 OS=Sus scrofa OX=9823 GN=RPL19 PE=1 SV=2 CANONICAL=F2Z546-1" }, "locus": { "chromosome": "12", "start_pos": 23033314, "end_pos": 23029452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102453.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102453.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079071.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079071.1" } ] } }, { "isoform_ac": "A0A8W4FNK1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z546/entry#A0A8W4FNK1-1", "sequence": { "sequence": "SMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMDQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK", "length": 158, "header": "tr|A0A8W4FNK1-1|F2Z546_PIG Computationally mapped isoform of Large ribosomal subunit protein eL19 OS=Sus scrofa OX=9823 GN=RPL19 PE=1 SV=1 CANONICAL=F2Z546-1" }, "locus": { "chromosome": "12", "start_pos": 23033253, "end_pos": 23029452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103419.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103419.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081072.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081072.1" } ] } }, { "isoform_ac": "F2Z546-1", "url": "https://www.uniprot.org/uniprotkb/F2Z546/entry#F2Z546-1", "sequence": { "sequence": "MGWVVAKALTKIWIQGRFLIWRCHCGWQKPGAGETCLSLVLNAHTSISCGIFHIRRLWRAEKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK", "length": 250, "header": "tr|F2Z546-1|F2Z546_PIG Isoform 1 of Large ribosomal subunit protein eL19 OS=Sus scrofa OX=9823 GN=RPL19 PE=1 SV=4 CANONICAL=F2Z546-1" }, "locus": { "chromosome": "12", "start_pos": 23033501, "end_pos": 23029452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019062.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019062.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018556.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018556.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structure of the mammalian ribosome-Sec61 complex to 3.4 A resolution.", "journal": "Cell", "date": "2014", "authors": "Voorhees Rebecca M, Fern\u00e1ndez Israel S, Scheres Sjors H W, Hegde Ramanujan S", "evidence": [ { "database": "UniProtKB", "id": "F2Z546", "url": "https://www.uniprot.org/uniprotkb/F2Z546" } ], "reference": [ { "type": "PubMed", "id": "24930395", "url": "https://glygen.org/publication/PubMed/24930395" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z546", "url": "https://www.uniprot.org/uniprotkb/F2Z546" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F2Z546", "url": "https://www.uniprot.org/uniprotkb/F2Z546" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F2Z546", "url": "https://www.uniprot.org/uniprotkb/F2Z546" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F2Z546", "url": "https://www.uniprot.org/uniprotkb/F2Z546" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "F2Z546", "url": "https://www.uniprot.org/uniprotkb/F2Z546" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z546-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 250, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z546-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z546" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z546", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z546" }, { "id": "SM01416", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01416" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein eL19", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 200, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQX0-1", "uniprot_ac": "F1SQX0", "uniprot_id": "F1SQX0_PIG", "mass": { "chemical_mass": 22525.0, "monoisotopic_mass": 22525.0 }, "refseq": { "ac": "XP_003481729", "name": "ras-related and estrogen-regulated growth inhibitor isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481729" }, "gene_names": [ { "name": "RERG", "type": "recommended", "evidence": [ { "id": "F1SQX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ] }, { "name": "RERG", "type": "synonym", "evidence": [ { "id": "XP_003481729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481729" } ] } ], "protein_names": [ { "name": "Ras-related and estrogen-regulated growth inhibitor", "type": "recommended", "evidence": [ { "id": "F1SQX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX0/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.2", "type": "synonym", "evidence": [ { "id": "F1SQX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX0/entry#names_and_taxonomy" } ] }, { "name": "ras-related and estrogen-regulated growth inhibitor isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003481729", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481729" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RERG", "url": "https://www.uniprot.org/uniprotkb/F1SQX0", "locus": { "chromosome": "5", "start_pos": 57462804, "end_pos": 57349382, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000602", "url": "https://www.ensembl.org/id/ENSSSCG00000000602" } ] } } ], "crossref": [ { "id": "F1SQX0", "url": "https://alphafold.ebi.ac.uk/entry/F1SQX0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000602", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000602", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04146", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04146", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155884", "url": "https://www.ncbi.nlm.nih.gov/gene/100155884", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051065", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051065", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155884", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155884", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KEGHIRW", "url": "https://omabrowser.org/oma/group/KEGHIRW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQX0", "url": "https://www.orthodb.org/?gene=F1SQX0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45704", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45704", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481729", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481729", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZMF5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZMF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQX0-1", "url": "https://www.uniprot.org/uniprotkb/F1SQX0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKSAEVKLAVFGTAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVTMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRKMVQGKTRRRSSTTHVKQAINKMLTKISS", "length": 199, "header": "tr|F1SQX0-1|F1SQX0_PIG Isoform 1 of Ras-related and estrogen-regulated growth inhibitor OS=Sus scrofa OX=9823 GN=RERG PE=3 SV=3 CANONICAL=F1SQX0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZMF5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQX0/entry#A0A286ZMF5-1", "sequence": { "sequence": "MAKSAEVKLAVFGTAGVGKSESTYRHQATIDDEVVTMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRKMVQGKTRRRSSTTHVKQAINKMLTKISS", "length": 180, "header": "tr|A0A286ZMF5-1|F1SQX0_PIG Computationally mapped isoform of Ras-related and estrogen-regulated growth inhibitor OS=Sus scrofa OX=9823 GN=RERG PE=3 SV=1 CANONICAL=F1SQX0-1" }, "locus": { "chromosome": "5", "start_pos": 57461493, "end_pos": 57353688, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060747.2", "url": "https://www.ensembl.org/id/ENSSSCT00000060747.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032807.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032807.1" } ] } }, { "isoform_ac": "F1SQX0-1", "url": "https://www.uniprot.org/uniprotkb/F1SQX0/entry#F1SQX0-1", "sequence": { "sequence": "MAKSAEVKLAVFGTAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVTMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRKMVQGKTRRRSSTTHVKQAINKMLTKISS", "length": 199, "header": "tr|F1SQX0-1|F1SQX0_PIG Isoform 1 of Ras-related and estrogen-regulated growth inhibitor OS=Sus scrofa OX=9823 GN=RERG PE=3 SV=3 CANONICAL=F1SQX0-1" }, "locus": { "chromosome": "5", "start_pos": 57461493, "end_pos": 57353688, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000647.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000647.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000632.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000632.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZMF5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZMF5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155884", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155884", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "negative regulation of cell population proliferation", "id": "GO:0008285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008285", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" }, { "name": "Ras protein signal transduction", "id": "GO:0007265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007265", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" }, { "name": "negative regulation of cell growth", "id": "GO:0030308", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030308", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" }, { "name": "response to hormone", "id": "GO:0009725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009725", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" }, { "name": "establishment or maintenance of cell polarity", "id": "GO:0007163", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007163", "evidence": [ { "database": "UniProtKB", "id": "F1SQX0", "url": "https://www.uniprot.org/uniprotkb/F1SQX0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQX0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 199, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQX0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQX0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 110, "end_pos": 112 }, { "start_pos": 155, "end_pos": 157 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PU32-1", "uniprot_ac": "F6PU32", "uniprot_id": "F6PU32_PIG", "mass": { "chemical_mass": 89786.0, "monoisotopic_mass": 89786.0 }, "refseq": {}, "gene_names": [ { "name": "CAST", "type": "recommended", "evidence": [ { "id": "F6PU32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ] } ], "protein_names": [ { "name": "Calpastatin", "type": "recommended", "evidence": [ { "id": "F6PU32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PU32/entry#names_and_taxonomy" } ] }, { "name": "Calpain inhibitor", "type": "synonym", "evidence": [ { "id": "F6PU32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PU32/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Specific inhibition of calpain (calcium-dependent cysteine protease). Plays a key role in postmortem tenderization of meat and have been proposed to be involved in muscle protein degradation in living tissue.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZNA7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNA7#function" }, { "database": "UniProtKB", "id": "ARBA00002637", "url": "https://www.uniprot.org/uniprotkb/ARBA00002637#function" }, { "database": "UniProtKB", "id": "A0A286ZQD7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQD7#function" }, { "database": "UniProtKB", "id": "A0A287A526", "url": "https://www.uniprot.org/uniprotkb/A0A287A526#function" }, { "database": "UniProtKB", "id": "A0A288CFT7", "url": "https://www.uniprot.org/uniprotkb/A0A288CFT7#function" }, { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAST", "url": "https://www.uniprot.org/uniprotkb/F6PU32", "locus": {} } ], "crossref": [ { "id": "F6PU32", "url": "https://alphafold.ebi.ac.uk/entry/F6PU32", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014170", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014170", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "397135", "url": "https://www.ncbi.nlm.nih.gov/gene/397135", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10077", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10077", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10077:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10077:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00748", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00748", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1474228", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1474228", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZNA7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZNA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQD7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZQD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZQD7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A526", "url": "https://www.uniprot.org/uniprotkb/A0A287A526", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A526-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A526-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A288CFT7", "url": "https://www.uniprot.org/uniprotkb/A0A288CFT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A288CFT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A288CFT7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PU32-1", "url": "https://www.uniprot.org/uniprotkb/F6PU32-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSSLAAVGLTELRTNQVQGWRSVSQTPSALHPVFSRPLRVLLCATQSKLVVAMAFASWWYKTHVSGKTSGSSSKSGEQKGSDEKKAASLGSSQPSRIQAGGTAPVTKVSPSSASTSKSSSMNPTETKAIPVSKQLEGPHSPNKKRHKKQAVKTEPEKKSQSTKPSVVHEKKTQEVKPKEHPEPKSLPTHSADAGSKRAHKEKAVSRSNEQPTSEKSTKPKAKPQDPTPSDGKLSVTGVSAASGKPAETKKDDKSLTSSVPAESKSSKPSGKSDMDAALDDLIDTLGGPEETEEDNTTYTGPEVLDPMSSTYIEELGKREVTLPPKYRELLDKKEGIPVPPPDTSKPLGPDDAIDALSLDLTCSSPTADGKKTEKEKSTGEVLKAQSVGVIKSAAAPPHEKKRRVEEDTMSDQALEALSASLGSRKSEPELDLSSIKEIDEAKAKEEKLKKCGEDDETVPPEYRLKPAMDKDGKPLLPEAEEKPKPLSESELIDELSEDFDQSKRKEKQSKPTEKTKESQATAPTPVGEAVSRTSLCCVQSAPPKPATGMVPDDAVEALAGSLGKKEADPEDGKPVEDKVKEKAKEEDREKLGEKEETIPPDYRLEEVKDKDGKTLPHKDPKEPVLPLSEDFVLDALSQDFAGPPAASSLFEDAKLSAAVSEVVSQTSAPTTHSAGPPPDTVQSDDKKLDDALDQLSDSLGQRQPDPDENKPIEDKVKEKAEAEHRDKLGERDDTIPPEYRHLLDKDEEGKSTKPPTKKPEAPKKPEAAQDPIDALSGDFDRCPSTTETSENTTKDKDKKTASKSKAPKNGGKAKDSTKAKEETSKQKSDGKSTS", "length": 835, "header": "tr|F6PU32-1|F6PU32_PIG Isoform 1 of Calpastatin OS=Sus scrofa OX=9823 GN=CAST PE=1 SV=1 CANONICAL=F6PU32-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNA7-1", "url": "https://www.uniprot.org/uniprotkb/F6PU32/entry#A0A286ZNA7-1", "sequence": { "sequence": "MSQPGQKPAASPRPRRAAAARHTQEKKAASLGSSQPSRIQAGGTAPVTKVSPSSASTSKSSSMNPTETKAVKTEPEKKSQSTKPSVVHEKKTQEVKPKEHPEPKSLPTHSADAGSKRAHKEKAVSRSNEQPTSEKSTKPKAKPQDPTPSDGKLSVTGVSAASGKPAETKKDDKSLTSSVPAESKSSKPSGKSDMDAALDDLIDTLGGPEETEEDNTTYTGPEVLDPMSSTYIEELGKREVTLPPKYRELLDKKEGIPVPPPDTSKPLGPDDAIDALSLDLTCSSPTADGKKTEKEKSTGEVLKAQSVGVIKSAAAPPHEKKRRVEEDTMSDQALEALSASLGSRKSEPELDLSSIKEIDEAKAKEEKLKKCGEDDETVPPEYRLKPAMDKDGKPLLPEAEEKPKPLSESELIDELSEDFDQSKRKEKQSKPTEKTKESQATAPTPVGEAVSRTSLCCVQSAPPKPATGMVPDDAVEALAGSLGKKEADPEDGKPVEDKVKEKAKEEDREKLGEKEETIPPDYRLEEVKDKDGKTLPHKDPKEPVLPLSEDFVLDALSQDFAGPPAASSLFEDAKLSAAVSEVVSQTSAPTTHSAGPPPDTVQSDDKKLDDALDQLSDSLGQRQPDPDENKPIEDKVKEKAEAEHRDKLGERDDTIPPEYRHLLDKDEEGKSTKPPTKKPEAPKKPEAAQDPIDALSGDFDRCPSTTETSENTTKDKDKKTASKSKAPKNGGKAKDSTKAKEETSKQKSDGKSTS", "length": 754, "header": "tr|A0A286ZNA7-1|F6PU32_PIG Computationally mapped isoform of Calpastatin OS=Sus scrofa OX=9823 GN=CAST PE=1 SV=1 CANONICAL=F6PU32-1" }, "locus": { "chromosome": "2", "start_pos": 103375033, "end_pos": 103255918, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063712.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063712.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033059.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033059.1" } ] } }, { "isoform_ac": "A0A286ZQD7-1", "url": "https://www.uniprot.org/uniprotkb/F6PU32/entry#A0A286ZQD7-1", "sequence": { "sequence": "MQTSPNAAEVSLPGSQKQSIAFLCFNEQVFQYESHRNQGMKSPQGSTLVNAFKLIAVKTEPEKKSQSTKPSVVHEKKTQEVKPKEHPEPKSLPTHSADAGSKRAHKEKAVSRSNEQPTSEKSTKPKAKPQDPTPSDGKLSVTGVSAASGKPAETKKDDKSLTSSVPAESKSSKPSGKSDMDAALDDLIDTLGGPEETEEDNTTYTGPEVLDPMSSTYIEELGKREVTLPPKYRELLDKKEGIPVPPPDTSKPLGPDDAIDALSLDLTCSSPTADGKKTEKEKSTGEVLKAQSVGVIKSAAAPPHEKKRRVEEDTMSDQALEALSASLGSRKSEPELDLSSIKEIDEAKAKEEKLKKCGEDDETVPPEYRLKPAMDKDGKPLLPEAEEKPKPLSESELIDELSEDFDQSKRKEKQSKPTEKTKESQATAPTPVGEAVSRTSLCCVQSAPPKPATGMVPDDAVEALAGSLGKKEADPEDGKPVEDKVKEKAKEEDREKLGEKEETIPPDYRLEEVKDKDGKTLPHKDPKEPVLPLSEDFVLDALSQDFAGPPAASSLFEDAKLSAAVSEVVSQTSAPTTHSAGPPPDTVQSDDKKLDDALDQLSDSLGQRQPDPDENKPIEDKVKEKAEAEHRDKLGERDDTIPPEYRHLLDKDEEGKSTKPPTKKPEAPKKPEAAQDPIDALSGDFDRCPSTTETSENTTKDKDKKTASKSKAPKNGGKAKDSTKAKEETSKQKSDGKSTS", "length": 740, "header": "tr|A0A286ZQD7-1|F6PU32_PIG Computationally mapped isoform of Calpastatin OS=Sus scrofa OX=9823 GN=CAST PE=1 SV=3 CANONICAL=F6PU32-1" }, "locus": { "chromosome": "2", "start_pos": 103375033, "end_pos": 103300266, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053084.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053084.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033687.3", "url": "https://www.ensembl.org/id/ENSSSCP00000033687.3" } ] } }, { "isoform_ac": "A0A287A526-1", "url": "https://www.uniprot.org/uniprotkb/F6PU32/entry#A0A287A526-1", "sequence": { "sequence": "MSQPGQKPAASPRPRRAAAARHTQEHVSGKTSGSSSKSGEQKGSDEKKAASLGSSQPSRIQAGGTAPVTKVSPSSASTSKSSSMNPTETKAIPVSKQLEGPHSPNKKRHKKQAVKTEPEKKSQSTKPSVVHEKKTQEVKPKEHPEPKSLPTHSADAGSKRAHKEKAVSRSNEQPTSEKSTKPKAKPQDPTPSDGKLSVTGVSAASGKPAETKKDDKSLTSSVPAESKSSKPSGKSDMDAALDDLIDTLGGPEETEEDNTTYTGPEVLDPMSSTYIEELGKREVTLPPKYRELLDKKEGIPVPPPDTSKPLGPDDAIDALSLDLTCSSPTADGKKTEKEKSTGEVLKAQSVGVIKSAAAPPHEKKRRVEEDTMSDQALEALSASLGSRKSEPELDLSSIKEIDEAKAKEEKLKKCGEDDETVPPEYRLKPAMDKDGKPLLPEAEEKPKESQATAPTPVGEAVSRTSLCCVQSAPPKPATGMVPDDAVEALAGSLGKKEADPEDGKPVEDKVKEKAKEEDREKLGEKEETIPPDYRLEEVKDKDGKTLPHKDPKEPVLPLSEDFVLDALSQDFAGPPAASSLFEDAKLSAAVSEVVSQTSAPTTHSAGPPPDTVQSDDKKLDDALDQLSDSLGQRQPDPDENKPIEDKVKEKAEAEHRDKLGERDDTIPPEYRHLLDKDEEGKSTKPPTKKPEAPKKPEAAQDPIDALSGDFDRCPSTTETSENTTKDKDKKTASKSKAPKNGGKAKDSTKAKEETSKQKSDGKSTS", "length": 765, "header": "tr|A0A287A526-1|F6PU32_PIG Computationally mapped isoform of Calpastatin OS=Sus scrofa OX=9823 GN=CAST PE=1 SV=2 CANONICAL=F6PU32-1" }, "locus": { "chromosome": "2", "start_pos": 103375033, "end_pos": 103255918, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058080.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058080.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038896.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038896.2" } ] } }, { "isoform_ac": "A0A288CFT7-1", "url": "https://www.uniprot.org/uniprotkb/F6PU32/entry#A0A288CFT7-1", "sequence": { "sequence": "MSQPGQKPAASPRPRRAAAARHTQEHVSGKTSGSSSKSGEQKGSDEKKAASLGSSQPSRIQAGGTAPVTKECKHPQTPLKSLCREARSRVSPSSASTSKSSSMNPTETKAVKTEPEKKSQSTKPSVVHEKKTQEVKPKEHPEPKSLPTHSADAGSKRAHKEKAVSRSNEQPTSEKSTKPKAKPQDPTPSDGKLSVTGVSAASGKPAETKKDDKSLTSSVPAESKSSKPSGKSDMDAALDDLIDTLGGPEETEEDNTTYTGPEVLDPMSSTYIEELGKREVTLPPKYRELLDKKEGIPVPPPDTSKPLGPDDAIDALSLDLTCSSPTADGKKTEKEKSTGEVLKAQSVGVIKSAAAPPHEKKRRVEEDTMSDQALEALSASLGSRKSEPELDLSSIKEIDEAKAKEEKLKKCGEDDETVPPEYRLKPAMDKDGKPLLPEAEEKPKPLSESELIDELSEDFDQSKRKEKQSKPTEKTKESQATAPTPVGEAVSRTSLCCVQSAPPKPATKGMVPDDAVEALAGSLGKKEADPEDGKPVEDKVKEKAKEEDREKLGEKEETIPPDYRLEEVKDKDGKTLPHKDPKEPVLPLSEDFVLDALSQDFAGPPAASSLQFEDAKLSAAVSEVVSQTSAPTTHSAGPPPDTVQSDDKKLDDALDQLSDSLGQRQPDPDENKPIEDKVKEKAEAEHRDKLGERDDTIPPEYRHLLDKDEEGKSTKPPTKKPEAPKKPEAAQDPIDALSGDFDRCPSTTETSENTTKDKDKKTASKSKAPKNGGKAKDSTKAKEETSKQKSDGKSTS", "length": 796, "header": "tr|A0A288CFT7-1|F6PU32_PIG Computationally mapped isoform of Calpastatin OS=Sus scrofa OX=9823 GN=CAST PE=1 SV=3 CANONICAL=F6PU32-1" }, "locus": { "chromosome": "2", "start_pos": 103375033, "end_pos": 103255918, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015481.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015481.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015071.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015071.4" } ] } }, { "isoform_ac": "F6PU32-1", "url": "https://www.uniprot.org/uniprotkb/F6PU32/entry#F6PU32-1", "sequence": { "sequence": "MPSSLAAVGLTELRTNQVQGWRSVSQTPSALHPVFSRPLRVLLCATQSKLVVAMAFASWWYKTHVSGKTSGSSSKSGEQKGSDEKKAASLGSSQPSRIQAGGTAPVTKVSPSSASTSKSSSMNPTETKAIPVSKQLEGPHSPNKKRHKKQAVKTEPEKKSQSTKPSVVHEKKTQEVKPKEHPEPKSLPTHSADAGSKRAHKEKAVSRSNEQPTSEKSTKPKAKPQDPTPSDGKLSVTGVSAASGKPAETKKDDKSLTSSVPAESKSSKPSGKSDMDAALDDLIDTLGGPEETEEDNTTYTGPEVLDPMSSTYIEELGKREVTLPPKYRELLDKKEGIPVPPPDTSKPLGPDDAIDALSLDLTCSSPTADGKKTEKEKSTGEVLKAQSVGVIKSAAAPPHEKKRRVEEDTMSDQALEALSASLGSRKSEPELDLSSIKEIDEAKAKEEKLKKCGEDDETVPPEYRLKPAMDKDGKPLLPEAEEKPKPLSESELIDELSEDFDQSKRKEKQSKPTEKTKESQATAPTPVGEAVSRTSLCCVQSAPPKPATGMVPDDAVEALAGSLGKKEADPEDGKPVEDKVKEKAKEEDREKLGEKEETIPPDYRLEEVKDKDGKTLPHKDPKEPVLPLSEDFVLDALSQDFAGPPAASSLFEDAKLSAAVSEVVSQTSAPTTHSAGPPPDTVQSDDKKLDDALDQLSDSLGQRQPDPDENKPIEDKVKEKAEAEHRDKLGERDDTIPPEYRHLLDKDEEGKSTKPPTKKPEAPKKPEAAQDPIDALSGDFDRCPSTTETSENTTKDKDKKTASKSKAPKNGGKAKDSTKAKEETSKQKSDGKSTS", "length": 835, "header": "tr|F6PU32-1|F6PU32_PIG Isoform 1 of Calpastatin OS=Sus scrofa OX=9823 GN=CAST PE=1 SV=1 CANONICAL=F6PU32-1" }, "locus": { "chromosome": "2", "start_pos": 103375033, "end_pos": 103256494, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015480.4", "url": "https://www.ensembl.org/id/ENSSSCT00000015480.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015070.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015070.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 228, "start_aa": "Thr", "end_pos": 228, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr228", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 525, "start_aa": "Thr", "end_pos": 525, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr525", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZNA7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNA7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1474228", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1474228", "resource": "Reactome", "description": "Degradation of the extracellular matrix" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cysteine-type endopeptidase inhibitor activity", "id": "GO:0004869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004869", "evidence": [ { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ], "pmid": "" }, { "name": "calcium-dependent cysteine-type endopeptidase inhibitor activity", "id": "GO:0010859", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010859", "evidence": [ { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "presynaptic active zone organization", "id": "GO:1990709", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990709", "evidence": [ { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ], "pmid": "" }, { "name": "negative regulation of type B pancreatic cell apoptotic process", "id": "GO:2000675", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000675", "evidence": [ { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F6PU32", "url": "https://www.uniprot.org/uniprotkb/F6PU32" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 792, "end_pos": 794, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6PU32-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 835, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6PU32-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6PU32" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 228, 525 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 296, "end_pos": 298 }, { "start_pos": 792, "end_pos": 794 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV98-1", "uniprot_ac": "F1SV98", "uniprot_id": "F1SV98_PIG", "mass": { "chemical_mass": 168675.0, "monoisotopic_mass": 168675.0 }, "refseq": {}, "gene_names": [ { "name": "ADGRB2", "type": "recommended", "evidence": [ { "id": "F1SV98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ] } ], "protein_names": [ { "name": "Adhesion G protein-coupled receptor B2", "type": "synonym", "evidence": [ { "id": "F1SV98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV98/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADGRB2", "url": "https://www.uniprot.org/uniprotkb/F1SV98", "locus": { "chromosome": "6", "start_pos": 88256146, "end_pos": 88293330, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003604", "url": "https://www.ensembl.org/id/ENSSSCG00000003604" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003604", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003604", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15988", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15988", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000203", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000203", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008077", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008077", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032471", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032471", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043838", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043838", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057244", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057244", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10239", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10239", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10239:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10239:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01825", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01825", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02793", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02793", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16489", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16489", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZP81", "url": "https://www.uniprot.org/uniprotkb/A0A286ZP81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZP81-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZP81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7E6", "url": "https://www.uniprot.org/uniprotkb/A0A287A7E6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A7E6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A7E6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA28", "url": "https://www.uniprot.org/uniprotkb/A0A287BA28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BA28-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BA28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJS2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV98-1", "url": "https://www.uniprot.org/uniprotkb/F1SV98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDL9", "url": "https://www.uniprot.org/uniprotkb/I3LDL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDL9-1", "url": "https://www.uniprot.org/uniprotkb/I3LDL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTPACPLLLSVILSLRLAAAFDPAPSACSALASGVLYGAFSLQDLFPTIASGCSWTLENPDPTKYSLYLRFNRQEQVCAHFAPRLLPLDHYLVNFTCLRPSPEEAEAPAESEVGRPEEEEEAAGLELCGGSGPFTFLHFDKNFVQLCLSAEPSEAPRLLAPAALAFRFVEVLLINNNNSSQFTCGVLCRWSEECGRAAGRACGFAQPGCSCPGEAGATTPPGPPAAHTLSNALVPGGPAPPAEADLHSGSSNDLFTTEMRYGEEPEEEPKVKTQWPRSADEPGLYMAQTGDPAAEEWSPWSVCSLTCGQGLQVRTRSCVSSPYGTLCSGPLRETRPCNNSATCPVHGVWEEWGSWSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPVEGQWLEWGPWGPCSTSCANGTQQRSRKCSVAGPAWATCTGALTDTRECGNLECPATDGKWGPWNAWSLCSKTCDTGWQRRFRMCQATGAQGYPCEGTGEEVKPCSEKRCPAFHEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGSASRRCLLSAQGVAYWGLPSFARCISHEYRYLYLSLREHLAKGQRMLAGEGMSQVVRSLQELLARRTYYSGDLLFSVDILRNVTDTFKRATYVPSADDVQRFFQVVSFMVDAENKDKWDDAQQVSPGSVHLLRVVEDFIHLVGDALKAFQSSLIVTDNLVISIQREPVSAVSSDITFPMRGRRGMKDWVRHSEDRLFLPKEVLSLSSPGKPAASASGAAGSLGRGRGPGTVPPGPGHSHQRLLPADPEEASSYFVIGAVLYRTLGLILPPPRPPLAVTSRVMTVTVRPPTQPPAEPLITVELSYIINGTTDPHCASWDYSRADASSGDWDTESCQTLETQAAHTRCQCQHLSTFAVLAQPPKDLTLELAGSPSVPLVIGCAVSCMALLTLLAIYAAFWRFIKSERSIILLNFCLSILASNILILVGQSRVLSKGVCTMTAAFLHFFFLSSFCWVLTEAWQSYLAVIGRMRTRLVRKRFLCLGWGLPALVVAVSVGFTRTKGYGTSSYCWLSLEGGLLYAFVGPAAVIVLVNMLIGIIVFNKLMARDGISDKSKKQRAGSERCPWASLLLPCSACGAVPSPLLSSASARNAMASLWSSCVVLPLLALTWMSAVLAMTDRRSVLFQALFAVFNSAQGFVITAVHCFLRREVQDVVKCQMGVCRADESEDSPDSCKNGQLQILSDFEKDVDLACQTVLFKEVNTCNPSTITGTLSRLSLDEDEEPKSCLVGPEGSLSFSPLPGNILVPMAASPGLGEPPPPQEANPVYMCGEGGLRQLDLTWLRPAEPGSEGDYMVLPRRTLSLQPGAGGGGEDPPRARPEGTPRRAAKALTHTEGYPSFLSVDHSGLGLGPAYGSLQNPYGMTFQPPPPTPSARQVPEPGERSRTMPRTVPGSTMKLGSLERKKLRYSDLDFEKVMHTRKRHSELYHELNQKFHTFDRYRSQSTAKEKPSPGERPGLSQQRRHQSWSTFKSMTLGSLPPKPRERLALHRAAAWEPTEPPDGDFQTEV", "length": 1550, "header": "tr|F1SV98-1|F1SV98_PIG Isoform 1 of Adhesion G protein-coupled receptor B2 OS=Sus scrofa OX=9823 GN=ADGRB2 PE=3 SV=3 CANONICAL=F1SV98-1" }, "isoforms": [ { "isoform_ac": "A0A286ZP81-1", "url": "https://www.uniprot.org/uniprotkb/F1SV98/entry#A0A286ZP81-1", "sequence": { "sequence": "TLSFKEPNTCGKGHRMTPACPLLLSVILSLRLAAAFDPAPSACSALASGVLYGAFSLQDLFPTIASGCSWTLENPDPTKYSLYLRFNRQEQVCAHFAPRLLPLDHYLVNFTCLRPSPEEAEAPAESEVGRPEEEEEAAGLELCGGSGPFTFLHFDKNFVQLCLSAEPSEAPRLLAPAALAFRFVEVLLINNNNSSQFTCGVLCRWSEECGRAAGRACGFAQPGCSCPGEAGATTPPGPPAAHTLSNALVPGGPAPPAEADLHSGSSNDLFTTEMRYGEEPEEEPKVKTQWPRSADEPGLYMAQTVHGVWEEWGSWSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPVEGQWLEWGPWGPCSTSCANGTQQRSRKCSVAGPAWATCTGALTDTRECGNLECPATDGKWGPWNAWSLCSKTCDTGWQRRFRMCQATGAQGYPCEGTGEEVKPCSEKRCPAFHEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGSASRRCLLSAQGVAYWGLPSFARCISHEYRYLYLSLREHLAKGQRMLAGEGMSQVVRSLQELLARRTYYSGDLLFSVDILRNVTDTFKRATYVPSADDVQRFFQVVSFMVDAENKDKWDDAQQVSPGSVHLLRVVEDFIHLVGDALKAFQSSLIVTDNLVISIQREPVSAVSSDITFPMRGRRGMKDWVRHSEDRLFLPKEVLSLSSPGKPAASASGAAGSLGRGRGPGTVPPGPGHSHQRLLPADPEEASSYFVIGAVLYRTLGLILPPPRPPLAVTSRVMTVTVRPPTQPPAEPLITVELSYIINGTTDPHCASWDYSRADASSGDWDTESCQTLETQAAHTRCQCQHLSTFAVLAQPPKDLTLELAGSPSVPLVIGCAVSCMALLTLLAIYAAFWRFIKSERSIILLNFCLSILASNILILVGQSRVLSKGVCTMTAAFLHFFFLSSFCWVLTEAWQSYLAVIGRMRTRLVRKRFLCLGWGLPALVVAVSVGFTRTKGYGTSSYCWLSLEGGLLYAFVGPAAVIVLVNMLIGIIVFNKLMARDGISDKSKKQRAGASLWSSCVVLPLLALTWMSAVLAMTDRRSVLFQALFAVFNSAQGFVITAVHCFLRREVQDVVKCQMGVCRADESEDSPDSCKNGQLQILSDFEKDVDLACQTVLFKEVNTCNPSTITGTLSRLSLDEDEEPKSCLVGPEGSLSFSPLPGNILVPMAASPGLGEPPPPQEANPVYMCGEGGLRQLDLTWLRPAEPGSEGDYMVLPRRTLSLQPGAGGGGEDPPRARPEGTPRRAAKALTHTEGYPSFLSVDHSGLGLGPAYGSLQNPYGMTFQPPPPTPSARQVPEPGERSRTMPRTVPGSTMKLGSLERKKLRYSDLDFEKVMHTRKRHSELYHELNQKFHTFDRYRSQSTAKREKRWSVSSGGAADRSVASEKPSPGERPGLSQQRRHQSWSTFKSMTLGSLPPKPRERLALHRAAAWEPTEPPDGDFQTEV", "length": 1496, "header": "tr|A0A286ZP81-1|F1SV98_PIG Computationally mapped isoform of Adhesion G protein-coupled receptor B2 OS=Sus scrofa OX=9823 GN=ADGRB2 PE=3 SV=2 CANONICAL=F1SV98-1" }, "locus": { "chromosome": "6", "start_pos": 88288939, "end_pos": 88256452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055784.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055784.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033400.2", "url": "https://www.ensembl.org/id/ENSSSCP00000033400.2" } ] } }, { "isoform_ac": "A0A287A7E6-1", "url": "https://www.uniprot.org/uniprotkb/F1SV98/entry#A0A287A7E6-1", "sequence": { "sequence": "REHTSWVGKGHRMTPACPLLLSVILSLRLAAAFDPAPSACSALASGVLYGAFSLQDLFPTIASGCSWTLENPDPTKYSLYLRFNRQEQVCAHFAPRLLPLDHYLVNFTCLRPSPEEAEAPAESEVGRPEEEEEAAGLELCGGSGPFTFLHFDKNFVQLCLSAEPSEAPRLLAPAALAFRFVEVLLINNNNSSQFTCGVLCRWSEECGRAAGRACGFAQPGCSCPGEAGATTPPGPPAAHTLSNALVPGGPAPPAEADLHSGSSNDLFTTEMRYGEEPEEEPKVKTQWPRSADEPGLYMAQTGDPAAEEWSPWSVCSLTCGQGLQVRTRSCVSSPYGTLCSGPLRETRPCNNSATCPVHGVWEEWGSWSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPVEGQWLEWGPWGPCSTSCANGTQQRSRKCSVAGPAWATCTGALTDTRECGNLECPATDGKWGPWNAWSLCSKTCDTGWQRRFRMCQATGAQGYPCEGTGEEVKPCSEKRCPAFHEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGSASRRCLLSAQGVAYWGLPSFARCISHEYRYLYLSLREHLAKGQRMLAGEGMSQVVRSLQELLARRTYYSGDLLFSVDILRNVTDTFKRATYVPSADDVQRFFQVVSFMVDAENKDKWDDAQQVSPGSVHLLRVVEDFIHLVGDALKAFQSSLIVTDNLVISIQREPVSAVSSDITFPMRGRRGMKDWVRHSEDRLFLPKEVLSLSSPGKPAASASGAAGSLGRGRGPGTVPPGPGHSHQRLLPADPEEASSYFVIGAVLYRTLGLILPPPRPPLAVTSRVMTVTVRPPTQPPAEPLITVELSYIINGTTDPHCASWDYSRADASSGDWDTESCQTLETQAAHTRCQCQHLSTFAVLAQPPKDLTLELAGSPSVPLVIGCAVSCMALLTLLAIYAAFWRFIKSERSIILLNFCLSILASNILILVGQSRVLSKGVCTMTAAFLHFFFLSSFCWVLTEAWQSYLAVIGRMRTRLVRKRFLCLGWGLPALVVAVSVGFTRTKGYGTSSYCWLSLEGGLLYAFVGPAAVIVLVNMLIGIIVFNKLMARDGISDKSKKQRAGSERCPWASLLLPCSACGAVPSPLLSSASARNAMASLWSSCVVLPLLALTWMSAVLAMTDRRSVLFQALFAVFNSAQGFVITAVHCFLRREVQDVVKCQMGVCRADESEDSPDSCKNGQLQILSDFEKDVDLACQTVLFKEVNTCNPSTITGTLSRLSLDEDEEPKSCLVGPEGSLSFSPLPGNILVPMAASPGLGEPPPPQEANPVYMCGEGGLRQLDLTWLRPAEPGSEGDYMVLPRRTLSLQPGAGGGGEDPPRARPEGTPRRAAKALTHTEGYPSFLSVDHSGLGLGPAYGSLQNPYGMTFQPPPPTPSARQVPEPGERSRTMPRTVPGSTMKLGSLERKKLRYSDLDFEKVMHTRKRHSELYHELNQKFHTFDRYRSQSTAKREKRWSVSSGGAADRSVASEKPSPGERPGLSQQRRHQSWSTFKSMTLGSLPPKPRERLALHRAAAWEPTEPPDGDFQTEV", "length": 1581, "header": "tr|A0A287A7E6-1|F1SV98_PIG Computationally mapped isoform of Adhesion G protein-coupled receptor B2 OS=Sus scrofa OX=9823 GN=ADGRB2 PE=3 SV=2 CANONICAL=F1SV98-1" }, "locus": { "chromosome": "6", "start_pos": 88286911, "end_pos": 88256452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047012.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047012.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039903.2", "url": "https://www.ensembl.org/id/ENSSSCP00000039903.2" } ] } }, { "isoform_ac": "A0A287BA28-1", "url": "https://www.uniprot.org/uniprotkb/F1SV98/entry#A0A287BA28-1", "sequence": { "sequence": "MTPACPLLLSVILSLRLAAAFDPAPSACSALASGVLYGAFSLQDLFPTIASGCSWTLENPDPTKYSLYLRFNRQEQVCAHFAPRLLPLDHYLVNFTCLRPSPEEAEAPAESEVGRPEEEEEAAGLELCGGSGPFTFLHFDKNFVQLCLSAEPSEAPRLLAPAALAFRFVEVLLINNNNSSQFTCGVLCRWSEECGRAAGRACGFAQPGCSCPGEAGATTPPGPPAAHTLSNALVPGGPAPPAEADLHSGSSNDLFTTEMRYGEEPEEEPKVKTQWPRSADEPGLYMAQTGDPAAEEWSPWSVCSLTCGQGLQVRTRSCVSSPYGTLCSGPLRETRPCNNSATCPVEGQWLEWGPWGPCSTSCANGTQQRSRKCSVAGPAWATCTGALTDTRECGNLECPATDGKWGPWNAWSLCSKTCDTGWQRRFRMCQATGAQGYPCEGTGEEVKPCSEKRCPAFHEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGSASRRCLLSAQGVAYWGLPSFARCISHEYRYLYLSLREHLAKGQRMLAGEGMSQVVRSLQELLARRTYYSGDLLFSVDILRNVTDTFKRATYVPSADDVQRFFQVVSFMVDAENKDKWDDAQQVSPGSVHLLRVVEDFIHLVGDALKAFQSSLIVTDNLVISIQREPVSAVSSDITFPMRGRRGMKDWVRHSEDRLFLPKEVLSLSSPGKPAASASGAAGSLGRGRGPGTVPPGPGHSHQRLLPADPEEASSYFVIGAVLYRTLGLILPPPRPPLAVTSRVMTVTVRPPTQPPAEPLITVELSYIINGTTDPHCASWDYSRADASSGDWDTESCQTLETQAAHTRCQCQHLSTFAVLAQPPKDLTLELAGSPSVPLVIGCAVSCMALLTLLAIYAAFWRFIKSERSIILLNFCLSILASNILILVGQSRVLSKGVCTMTAAFLHFFFLSSFCWVLTEAWQSYLAVIGRMRTRLVRKRFLCLGWGLPALVVAVSVGFTRTKGYGTSSYCWLSLEGGLLYAFVGPAAVIVLVNMLIGIIVFNKLMARDGISDKSKKQRAGASLWSSCVVLPLLALTWMSAVLAMTDRRSVLFQALFAVFNSAQGFVITAVHCFLRREVQDVVKCQMGVCRADESEDSPDSCKNGQLQILSDFEKDVDLACQTVLFKEVNTCNPSTITGTLSRLSLDEDEEPKSCLVGPEGSLSFSPLPGNILVPMAASPGLGEPPPPQEANPVYMCGEGGLRQLDLTWLRPAEPGSEGDYMVLPRRTLSLQPGAGGGGEDPPRARPEGTPRRAAKALTHTEGYPSFLSVDHSGLGLGPAYGSLQNPYGMTFQPPPPTPSARQVPEPGERSRTMPRTVPGSTMKLGSLERKKLRYSDLDFEKVMHTRKRHSELYHELNQKFHTFDRYRSQSTAKEKPSPGERPGLSQQRRHQSWSTFKSMTLGSLPPKPRERLALHRAAAWEPTEPPDGDFQTEV", "length": 1462, "header": "tr|A0A287BA28-1|F1SV98_PIG Computationally mapped isoform of Adhesion G protein-coupled receptor B2 OS=Sus scrofa OX=9823 GN=ADGRB2 PE=3 SV=3 CANONICAL=F1SV98-1" }, "locus": { "chromosome": "6", "start_pos": 88286556, "end_pos": 88256452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050131.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050131.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052943.3", "url": "https://www.ensembl.org/id/ENSSSCP00000052943.3" } ] } }, { "isoform_ac": "A0A8W4FJS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SV98/entry#A0A8W4FJS2-1", "sequence": { "sequence": "MTPACPLLLSVILSLRLAAAFDPAPSACSALASGVLYGAFSLQDLFPTIASGCSWTLENPDPTKYSLYLRFNRQEQVCAHFAPRLLPLDHYLVNFTCLRPSPEEAEAPAESEVGRPEEEEEAAGLELCGGSGPFTFLHFDKNFVQLCLSAEPSEAPRLLAPAALAFRFVEVLLINNNNSSQFTCGVLCRWSEECGRAAGRACGFAQPGCSCPGEAGATTPPGPPAAHTLSNALVPGGPAPPAEADLHSGSSNDLFTTEMRYGEEPEEEPKVKTQWPRSADEPGLYMAQTVHGVWEEWGSWSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPVEGQWLEWGPWGPCSTSCANGTQQRSRKCSVAGPAWATCTGALTDTRECGNLECPATDGKWGPWNAWSLCSKTCDTGWQRRFRMCQATGAQGYPCEGTGEEVKPCSEKRCPAFHEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGSASRRCLLSAQGVAYWGLPSFARCISHEYRYLYLSLREHLAKGQRMLAGEGMSQVVRSLQELLARRTYYSGDLLFSVDILRNVTDTFKRATYVPSADDVQRFFQVVSFMVDAENKDKWDDAQQVSPGSVHLLRVVEDFIHLVGDALKAFQSSLIVTDNLVISIQREPVSAVSSDITFPMRGRRGMKDWVRHSEDRLFLPKEVLSLSSPGKPAASASGAAGSLGRGRGPGTVPPGPGHSHQRLLPADPEEASSYFVIGAVLYRTLGLILPPPRPPLAVTSRVMTVTVRPPTQPPAEPLITVELSYIINGTTDPHCASWDYSRADASSGDWDTESCQTLETQAAHTRCQCQHLSTFAVLAQPPKDLTLELAGSPSVPLVIGCAVSCMALLTLLAIYAAFWRFIKSERSIILLNFCLSILASNILILVGQSRVLSKGVCTMTAAFLHFFFLSSFCWVLTEAWQSYLAVIGRMRTRLVRKRFLCLGWGLPALVVAVSVGFTRTKGYGTSSYCWLSLEGGLLYAFVGPAAVIVLVNMLIGIIVFNKLMARDGISDKSKKQRAGSERCPWASLLLPCSACGAVPSPLLSSASARNAMASLWSSCVVLPLLALTWMSAVLAMTDRRSVLFQALFAVFNSAQGFVITAVHCFLRREVQDVVKCQMGVCRADESEDSPDSCKNGQLQILSDFEKDVDLACQTVLFKEVNTCNPSTITGTLSRLSLDEDEEPKSCLVGPEGSLSFSPLPGNILVPMAASPGLGEPPPPQEANPVYMCGEGGLRQLDLTWLRPAEPGSEGDYMVLPRRTLSLQPGAGGGGEDPPRARPEGTPRRAAKALTHTEGYPSFLSVDHSGLGLGPAYGSLQNPYGMTFQPPPPTPSARQVPEPGERSRTMPRTVPGSTMKLGSLERKKLRYSDLDFEKVMHTRKRHSELYHELNQKFHTFDRYRSQSTAKEKPSPGERPGLSQQRRHQSWSTFKSMTLGSLPPKPRERLALHRAAAWEPTEPPDGDFQTEV", "length": 1495, "header": "tr|A0A8W4FJS2-1|F1SV98_PIG Computationally mapped isoform of Adhesion G protein-coupled receptor B2 OS=Sus scrofa OX=9823 GN=ADGRB2 PE=3 SV=1 CANONICAL=F1SV98-1" }, "locus": { "chromosome": "6", "start_pos": 88286556, "end_pos": 88256452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106491.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106491.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078555.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078555.1" } ] } }, { "isoform_ac": "F1SV98-1", "url": "https://www.uniprot.org/uniprotkb/F1SV98/entry#F1SV98-1", "sequence": { "sequence": "MTPACPLLLSVILSLRLAAAFDPAPSACSALASGVLYGAFSLQDLFPTIASGCSWTLENPDPTKYSLYLRFNRQEQVCAHFAPRLLPLDHYLVNFTCLRPSPEEAEAPAESEVGRPEEEEEAAGLELCGGSGPFTFLHFDKNFVQLCLSAEPSEAPRLLAPAALAFRFVEVLLINNNNSSQFTCGVLCRWSEECGRAAGRACGFAQPGCSCPGEAGATTPPGPPAAHTLSNALVPGGPAPPAEADLHSGSSNDLFTTEMRYGEEPEEEPKVKTQWPRSADEPGLYMAQTGDPAAEEWSPWSVCSLTCGQGLQVRTRSCVSSPYGTLCSGPLRETRPCNNSATCPVHGVWEEWGSWSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPVEGQWLEWGPWGPCSTSCANGTQQRSRKCSVAGPAWATCTGALTDTRECGNLECPATDGKWGPWNAWSLCSKTCDTGWQRRFRMCQATGAQGYPCEGTGEEVKPCSEKRCPAFHEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGSASRRCLLSAQGVAYWGLPSFARCISHEYRYLYLSLREHLAKGQRMLAGEGMSQVVRSLQELLARRTYYSGDLLFSVDILRNVTDTFKRATYVPSADDVQRFFQVVSFMVDAENKDKWDDAQQVSPGSVHLLRVVEDFIHLVGDALKAFQSSLIVTDNLVISIQREPVSAVSSDITFPMRGRRGMKDWVRHSEDRLFLPKEVLSLSSPGKPAASASGAAGSLGRGRGPGTVPPGPGHSHQRLLPADPEEASSYFVIGAVLYRTLGLILPPPRPPLAVTSRVMTVTVRPPTQPPAEPLITVELSYIINGTTDPHCASWDYSRADASSGDWDTESCQTLETQAAHTRCQCQHLSTFAVLAQPPKDLTLELAGSPSVPLVIGCAVSCMALLTLLAIYAAFWRFIKSERSIILLNFCLSILASNILILVGQSRVLSKGVCTMTAAFLHFFFLSSFCWVLTEAWQSYLAVIGRMRTRLVRKRFLCLGWGLPALVVAVSVGFTRTKGYGTSSYCWLSLEGGLLYAFVGPAAVIVLVNMLIGIIVFNKLMARDGISDKSKKQRAGSERCPWASLLLPCSACGAVPSPLLSSASARNAMASLWSSCVVLPLLALTWMSAVLAMTDRRSVLFQALFAVFNSAQGFVITAVHCFLRREVQDVVKCQMGVCRADESEDSPDSCKNGQLQILSDFEKDVDLACQTVLFKEVNTCNPSTITGTLSRLSLDEDEEPKSCLVGPEGSLSFSPLPGNILVPMAASPGLGEPPPPQEANPVYMCGEGGLRQLDLTWLRPAEPGSEGDYMVLPRRTLSLQPGAGGGGEDPPRARPEGTPRRAAKALTHTEGYPSFLSVDHSGLGLGPAYGSLQNPYGMTFQPPPPTPSARQVPEPGERSRTMPRTVPGSTMKLGSLERKKLRYSDLDFEKVMHTRKRHSELYHELNQKFHTFDRYRSQSTAKEKPSPGERPGLSQQRRHQSWSTFKSMTLGSLPPKPRERLALHRAAAWEPTEPPDGDFQTEV", "length": 1550, "header": "tr|F1SV98-1|F1SV98_PIG Isoform 1 of Adhesion G protein-coupled receptor B2 OS=Sus scrofa OX=9823 GN=ADGRB2 PE=3 SV=3 CANONICAL=F1SV98-1" }, "locus": { "chromosome": "6", "start_pos": 88286556, "end_pos": 88256452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003999.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003999.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003908.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003908.3" } ] } }, { "isoform_ac": "I3LDL9-1", "url": "https://www.uniprot.org/uniprotkb/F1SV98/entry#I3LDL9-1", "sequence": { "sequence": "REHTSWVGKGHRMTPACPLLLSVILSLRLAAAFDPAPSACSALASGVLYGAFSLQDLFPTIASGCSWTLENPDPTKYSLYLRFNRQEQVCAHFAPRLLPLDHYLVNFTCLRPSPEEAEAPAESEVGRPEEEEEAAGLELCGGSGPFTFLHFDKNFVQLCLSAEPSEAPRLLAPAALAFRFVEVLLINNNNSSQFTCGVLCRWSEECGRAAGRACGFAQPGCSCPGEAGATTPPGPPAAHTLSNALVPGGPAPPAEADLHSGSSNDLFTTEMRYGEEPEEEPKVKTQWPRSADEPGLYMAQTGDPAAEEWSPWSVCSLTCGQGLQVRTRSCVSSPYGTLCSGPLRETRPCNNSATCPVHGVWEEWGSWSLCSRSCGRGSRSRMRTCVPPQHGGKACEGPELQTKLCSMAACPVEGQWLEWGPWGPCSTSCANGTQQRSRKCSVAGPAWATCTGALTDTRECGNLECPATDGKWGPWNAWSLCSKTCDTGWQRRFRMCQATGAQGYPCEGTGEEVKPCSEKRCPAFHEMCRDEYVMLMTWKKAAAGEIIYNKCPPNASGSASRRCLLSAQGVAYWGLPSFARCISHEYRYLYLSLREHLAKGQRMLAGEGMSQVVRSLQELLARRTYYSGDLLFSVDILRNVTDTFKRATYVPSADDVQRFFQVVSFMVDAENKDKWDDAQQVSPGSVHLLRVVEDFIHLVGDALKAFQSSLIVTDNLVISIQREPVSAVSSDITFPMRGRRGMKDWVRHSEDRLFLPKEVLSLSSPGKPAASASGAAGSLGRGRGPGTVPPGPGHSHQRLLPADPEEASSYFVIGAVLYRTLGLILPPPRPPLAVTSRVMTVTVRPPTQPPAEPLITVELSYIINGTTDPHCASWDYSRADASSGDWDTESCQTLETQAAHTRCQCQHLSTFAVLAQPPKDLTLELAGSPSVPLVIGCAVSCMALLTLLAIYAAFWRFIKSERSIILLNFCLSILASNILILVGQSRVLSKGVCTMTAAFLHFFFLSSFCWVLTEAWQSYLAVIGRMRTRLVRKRFLCLGWGLPALVVAVSVGFTRTKGYGTSSYCWLSLEGGLLYAFVGPAAVIVLVNMLIGIIVFNKLMARDGISDKSKKQRAGASLWSSCVVLPLLALTWMSAVLAMTDRRSVLFQALFAVFNSAQGFVITAVHCFLRREVQDVVKCQMGVCRADESEDSPDSCKNGQLQILSDFEKDVDLACQTVLFKEVNTCNPSTITGTLSRLSLDEDEEPKSCLVGPEGSLSFSPLPGNILVPMAASPGLGEPPPPQEANPVYMCGEGGLRQLDLTWLRPAEPGSEGDYMVLPRRTLSLQPGAGGGGEDPPRARPEGTPRRAAKALTHTEGYPSFLSVDHSGLGLGPAYGSLQNPYGMTFQPPPPTPSARQVPEPGERSRTMPRTVPGSTMKLGSLERKKLRYSDLDFEVMHTRKRHSELYHELNQKFHTFDRYRSQSTAKREKRWSVSSGGAADRSVASEKPSPGERPGLSQQRRHQSWSTFKSMTLGSLPPKPRERLALHRAAAWEPTEPPDGDFQTEV", "length": 1547, "header": "tr|I3LDL9-1|F1SV98_PIG Computationally mapped isoform of Adhesion G protein-coupled receptor B2 OS=Sus scrofa OX=9823 GN=ADGRB2 PE=3 SV=4 CANONICAL=F1SV98-1" }, "locus": { "chromosome": "6", "start_pos": 88286911, "end_pos": 88256452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022604.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022604.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022151.4", "url": "https://www.ensembl.org/id/ENSSSCP00000022151.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1413, "start_aa": "Thr", "end_pos": 1413, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1413", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZP81", "url": "https://www.uniprot.org/uniprotkb/A0A286ZP81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "pmid": "" }, { "name": "negative regulation of angiogenesis", "id": "GO:0016525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016525", "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "pmid": "" }, { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "pmid": "" }, { "name": "peripheral nervous system development", "id": "GO:0007422", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007422", "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "pmid": "" }, { "name": "calcineurin-NFAT signaling cascade", "id": "GO:0033173", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033173", "evidence": [ { "database": "UniProtKB", "id": "F1SV98", "url": "https://www.uniprot.org/uniprotkb/F1SV98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 338, "end_pos": 340, "annotation": "n_glycosylation_sequon" }, { "start_pos": 419, "end_pos": 421, "annotation": "n_glycosylation_sequon" }, { "start_pos": 542, "end_pos": 544, "annotation": "n_glycosylation_sequon" }, { "start_pos": 627, "end_pos": 629, "annotation": "n_glycosylation_sequon" }, { "start_pos": 852, "end_pos": 854, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV98" }, { "id": "PS50227", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50227" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 2 profile 1", "eco_id": "ECO_0000259", "start_pos": 503, "end_pos": 573, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV98" }, { "id": "PS50261", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50261" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 2 profile 2", "eco_id": "ECO_0000259", "start_pos": 917, "end_pos": 1191, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV98" }, { "id": "PS50221", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50221" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GAIN-B", "eco_id": "ECO_0000259", "start_pos": 739, "end_pos": 909, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1413 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 177, "end_pos": 179 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 338, "end_pos": 340 }, { "start_pos": 419, "end_pos": 421 }, { "start_pos": 542, "end_pos": 544 }, { "start_pos": 627, "end_pos": 629 }, { "start_pos": 852, "end_pos": 854 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUZ4-1", "uniprot_ac": "F1SUZ4", "uniprot_id": "F1SUZ4_PIG", "mass": { "chemical_mass": 77125.0, "monoisotopic_mass": 77125.0 }, "refseq": {}, "gene_names": [ { "name": "STIM1", "type": "recommended", "evidence": [ { "id": "F1SUZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ] } ], "protein_names": [ { "name": "Stromal interaction molecule 1", "type": "synonym", "evidence": [ { "id": "F1SUZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STIM1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4", "locus": { "chromosome": "9", "start_pos": 6066617, "end_pos": 6270575, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014792", "url": "https://www.ensembl.org/id/ENSSSCG00000014792" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014792", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014792", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09573", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09573", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11722", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11722", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100171399", "url": "https://www.ncbi.nlm.nih.gov/gene/100171399", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032393", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032393", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057835", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057835", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287BE30", "url": "https://www.orthodb.org/?gene=A0A287BE30", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15136", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15136", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15136:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15136:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07647", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07647", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16533", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16533", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25578", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25578", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5578775", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578775", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZPH8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZPH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX96", "url": "https://www.uniprot.org/uniprotkb/A0A287AX96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX96-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX96-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BE30", "url": "https://www.uniprot.org/uniprotkb/A0A287BE30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BE30-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BE30-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKH8", "url": "https://www.uniprot.org/uniprotkb/A0A287BKH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKL9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVCARLALWLLWGLLLHHGQSLSQSHGEKATGTGSGAGSEESTAAEFCRIDKPLCHSEDEKLSFDAVRSIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALDTVLFGPPLLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSAWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEVTAALRERLHRWQQIEILCGFQIVNNPGIHSLVAALNIDPSWMGSTRPSPAHFIMTDDVDDMDEEIVSPLSMQSPSLQSSVRQRLTEPQHGLGSQRDLTHSDSESSLHTSDRQRLAPKPPPMVRAADEAFSAMPSNGSHRLMEGLHPGALVERLPDSPALAKKTLLALNHGLDKAHSLLELSSSAPPSGSPPLDSSRSHSPSPLDADTPSPAGDSRALPASRNTRIPHLAGKKAAPEEDNGSTGEETDSSPGRKKFPLKIFKKPLKK", "length": 685, "header": "tr|F1SUZ4-1|F1SUZ4_PIG Isoform 1 of Stromal interaction molecule 1 OS=Sus scrofa OX=9823 GN=STIM1 PE=1 SV=1 CANONICAL=F1SUZ4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZPH8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4/entry#A0A286ZPH8-1", "sequence": { "sequence": "MCAPVSPCGSSGGSSCITARASAKATARRRPELAQGPVLRSPLQQFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALDTVLFGPPLLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSAWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEVTAALRERLHRWQQIEILCGFQIVNNPGIHSLVAALNIDPSWMGSTRPSPAHFIMTDDVDDMDEEIVSPLSMQSPSLQSSVRQRLTEPQHGLGSQRDLTHSDSESSLHTSDRQRLAPKPPPMVRAADEAFSAMPSNGSHRLMEGLHPGALVERLPDSPALAKKTLLALNHGLDKAHSLLELSSSAPPSGSPPLDSSRSHSPSPLDADTPSPAGDSRALPASRNTRIPHLAGKKAAPEEDNGSTGEETDSSPGRKKFPLKIFKKPLKK", "length": 640, "header": "tr|A0A286ZPH8-1|F1SUZ4_PIG Computationally mapped isoform of Stromal interaction molecule 1 OS=Sus scrofa OX=9823 GN=STIM1 PE=1 SV=1 CANONICAL=F1SUZ4-1" }, "locus": { "chromosome": "9", "start_pos": 6269419, "end_pos": 6068020, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057679.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057679.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033366.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033366.1" } ] } }, { "isoform_ac": "A0A287AX96-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4/entry#A0A287AX96-1", "sequence": { "sequence": "MDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALDTVLFGPPLLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSAWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEVTAALRERLHRWQQIEILCGFQIVNNPGIHSLVAALNIDPSWMGSTRPSPAHFIMTDDVDDMDEEIVSPLSMQSPSLQSSVRQRLTEPQHGLGSQRDLTHSDSESSLHTSDRQRLAPKPPPMVRAADEAFSAMPSNGSHRLMEGLHPGALVERLPDSPALAKKTLLALNHGLDKAHSLLELSSSAPPSGSPPLDSSRSHSPSPLDADTPSPAGDSRALPASRNTRIPHLAGKKAAPEEDNGSTGEETDSSPGRKKFPLKIFKKPLKK", "length": 611, "header": "tr|A0A287AX96-1|F1SUZ4_PIG Computationally mapped isoform of Stromal interaction molecule 1 OS=Sus scrofa OX=9823 GN=STIM1 PE=1 SV=2 CANONICAL=F1SUZ4-1" }, "locus": { "chromosome": "9", "start_pos": 6160853, "end_pos": 6068020, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062811.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062811.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048568.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048568.2" } ] } }, { "isoform_ac": "A0A287BE30-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4/entry#A0A287BE30-1", "sequence": { "sequence": "MDVCARLALWLLWGLLLHHGQSLSQSHGEKATGTGSGAGSEESTAAEFCRIDKPLCHSEDEKLSFDAVRSIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALDTVLFGPPLLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSAWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEVTAALRERLHRWQQIEILCGFQIVNNPGIHSLVAALNIDPSWMGSTRPSPAHFIMTDDVDDMDEEIVSPLSMQSPSLQSSVRQRLTEPQHGLGSQRLVEGEAGHLLTSRVSLRRMRSLSSGQSFSSEGLGTSAPAASASSSCSSAATATTATTTSSSTTSTSITSITTVHVHPVYHHHSTSYFLQTGPCPDLPHPDSAAAMPWHSESLGDLTHSDSESSLHTSDRQRLAPKPPPMVRAADEAFSAMPSNGSHRLMEGLHPGALVERLPDSPALAKKTLLALNHGLDKAHSLLELSSSAPPSGSPPLDSSRSHSPSPLDADTPSPAGDSRALPASRNTRIPHLAGKKAAPEEDNGSTGEETDSSPGRKKFPLKIFKKPLKK", "length": 798, "header": "tr|A0A287BE30-1|F1SUZ4_PIG Computationally mapped isoform of Stromal interaction molecule 1 OS=Sus scrofa OX=9823 GN=STIM1 PE=1 SV=2 CANONICAL=F1SUZ4-1" }, "locus": { "chromosome": "9", "start_pos": 6269423, "end_pos": 6068020, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047771.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047771.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054352.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054352.3" } ] } }, { "isoform_ac": "A0A287BKH8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4/entry#A0A287BKH8-1", "sequence": { "sequence": "MVRDVSRAHAEFCRIDKPLCHSEDEKLSFDAVRSIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALDTVLFGPPLLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSAWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEVTAALRERLHRWQQIEILCGFQIVNNPGIHSLVAALNIDPSWMGSTRPSPAHFIMTDDVDDMDEEIVSPLSMQSPSLQSSVRQRLTEPQHGLGSQRDLTHSDSESSLHTSDRQRLAPKPPPMVRAADEAFSAMPSNGSHRLMEGLHPGALVERLPDSPALAKKTLLALNHGLDKAHSLLELSSSAPPSGSPPLDSSRSHSPSPLDADTPSPAGDSRALPASRNTRIPHLAGKKAAPEEDNGSTGEETDSSPGRKKFPLKIFKKPLKK", "length": 649, "header": "tr|A0A287BKH8-1|F1SUZ4_PIG Computationally mapped isoform of Stromal interaction molecule 1 OS=Sus scrofa OX=9823 GN=STIM1 PE=1 SV=2 CANONICAL=F1SUZ4-1" }, "locus": { "chromosome": "9", "start_pos": 6212902, "end_pos": 6068020, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063228.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063228.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056583.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056583.2" } ] } }, { "isoform_ac": "A0A5G2QKL9-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4/entry#A0A5G2QKL9-1", "sequence": { "sequence": "MRERGRGAGPSGGPGSPPSGGSAPAGEPGLPPELRAAPGAQGLRPCFSRGRPDCRVFRRRSWLSSVRKRRRGARELPRVVSVEASKGQKDEFCRIDKPLCHSEDEKLSFDAVRSIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALDTVLFGPPLLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSAWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEVTAALRERLHRWQQIEILCGFQIVNNPGIHSLVAALNIDPSWMGSTRPSPAHFIMTDDVDDMDEEIVSPLSMQYAAWLMGRRFSDRSLCSASAGSDDQSLWKYPAPSLQSSVRQRLTEPQHGLGSQRDLTHSDSESSLHTSDRQRLAPKPPPMVRAADEAFSAMPSNGSHRLMEGLHPGALVERLPDSPALAKKTLLALNHGLDKAHSLLELSSSAPPSGSPPLDSSRSHSPSPLDADTPSPAGDSRALPASRNTRIPHLAGKKAAPEEDNGSTGEETDSSPGRKKFPLKIFKKPLKK", "length": 760, "header": "tr|A0A5G2QKL9-1|F1SUZ4_PIG Computationally mapped isoform of Stromal interaction molecule 1 OS=Sus scrofa OX=9823 GN=STIM1 PE=1 SV=1 CANONICAL=F1SUZ4-1" }, "locus": { "chromosome": "9", "start_pos": 6175264, "end_pos": 6068020, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085393.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085393.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065379.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065379.1" } ] } }, { "isoform_ac": "F1SUZ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4/entry#F1SUZ4-1", "sequence": { "sequence": "MDVCARLALWLLWGLLLHHGQSLSQSHGEKATGTGSGAGSEESTAAEFCRIDKPLCHSEDEKLSFDAVRSIHKLMDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTVDEVVQWLITYVELPQYEETFRKLQLSGHAMPRLAVTNTTMTGTVLKMTDRSHRQKLQLKALDTVLFGPPLLTRHNHLKDFMLVVSIVIGVGGCWFAYIQNRYSKEHMKKMMKDLEGLHRAEQSLHDLQERLHKAQEEHRTVEVEKVHLEKKLRDEINLAKQEAQRLKELREGTENERSRQKYAEEELEQVREALRKAEKELESHSAWYAPEALQKWLQLTHEVEVQYYNIKKQNAEKQLLVAKEGAEKIKKKRNTLFGTFHVAHSSSLDDVDHKILTAKQALSEVTAALRERLHRWQQIEILCGFQIVNNPGIHSLVAALNIDPSWMGSTRPSPAHFIMTDDVDDMDEEIVSPLSMQSPSLQSSVRQRLTEPQHGLGSQRDLTHSDSESSLHTSDRQRLAPKPPPMVRAADEAFSAMPSNGSHRLMEGLHPGALVERLPDSPALAKKTLLALNHGLDKAHSLLELSSSAPPSGSPPLDSSRSHSPSPLDADTPSPAGDSRALPASRNTRIPHLAGKKAAPEEDNGSTGEETDSSPGRKKFPLKIFKKPLKK", "length": 685, "header": "tr|F1SUZ4-1|F1SUZ4_PIG Isoform 1 of Stromal interaction molecule 1 OS=Sus scrofa OX=9823 GN=STIM1 PE=1 SV=1 CANONICAL=F1SUZ4-1" }, "locus": { "chromosome": "9", "start_pos": 6269423, "end_pos": 6068020, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016143.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016143.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015711.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015711.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZPH8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZPH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5578775", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578775", "resource": "Reactome", "description": "Ion homeostasis" }, { "id": "R-SSC-983695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983695", "resource": "Reactome", "description": "Antigen activates B Cell Receptor (BCR) leading to generation of second messengers" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" }, { "name": "calcium channel regulator activity", "id": "GO:0005246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005246", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "calcium ion transport", "id": "GO:0006816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006816", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" }, { "name": "regulation of transport", "id": "GO:0051049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051049", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" }, { "name": "intracellular calcium ion homeostasis", "id": "GO:0006874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006874", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" }, { "name": "store-operated calcium entry", "id": "GO:0002115", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002115", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ4", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 171, "end_pos": 173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 554, "end_pos": 556, "annotation": "n_glycosylation_sequon" }, { "start_pos": 658, "end_pos": 660, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUZ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUZ4" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 190, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 131, "end_pos": 133 }, { "start_pos": 171, "end_pos": 173 }, { "start_pos": 554, "end_pos": 556 }, { "start_pos": 658, "end_pos": 660 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z4Y6-1", "uniprot_ac": "F2Z4Y6", "uniprot_id": "F2Z4Y6_PIG", "mass": { "chemical_mass": 27066.0, "monoisotopic_mass": 27066.0 }, "refseq": {}, "gene_names": [ { "name": "CRYBA4", "type": "recommended", "evidence": [ { "id": "F2Z4Y6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6" } ] } ], "protein_names": [ { "name": "Beta-crystallin A4", "type": "recommended", "evidence": [ { "id": "F2Z4Y6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6/entry#names_and_taxonomy" } ] }, { "name": "Beta-A4 crystallin", "type": "synonym", "evidence": [ { "id": "F2Z4Y6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Crystallins are the dominant structural components of the vertebrate eye lens.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZSI1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSI1#function" }, { "database": "UniProtKB", "id": "ARBA00003689", "url": "https://www.uniprot.org/uniprotkb/ARBA00003689#function" }, { "database": "UniProtKB", "id": "A0A8W4FJX1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJX1#function" }, { "database": "UniProtKB", "id": "F2Z4Y6", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y6", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CRYBA4", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6", "locus": { "chromosome": "14", "start_pos": 44219163, "end_pos": 44194592, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000043809", "url": "https://www.ensembl.org/id/ENSSSCG00000043809" } ] } } ], "crossref": [ { "id": "F2Z4Y6", "url": "https://alphafold.ebi.ac.uk/entry/F2Z4Y6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000043809", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000043809", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152041", "url": "https://www.ncbi.nlm.nih.gov/gene/100152041", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152041", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152041", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZSI1", "url": "https://www.orthodb.org/?gene=A0A286ZSI1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11818", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11818", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11818:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11818:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZSI1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZSI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJX1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z4Y6", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z4Y6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQPALHASLPSALHPSPVRHKRGAGSAGPRQGVGAPQAPTQPGYCREQHFPLWAQHIVVWDEEGFQGRRHEFTAECPSVLELGFETVRSLKVLSGAWVGFEHAGFQGQQYVLERGEYPSWDAWSGNTAYPAERLTSFRPVACANHRDSRLTIFEQENFLGKKGELSDDYPSLQAMGWDGNEVGSFHVHSGAWVCSQFPGYRGFQYVLECDHHSGDYKHFREWGSHAQTFQVQSIRRIQQ", "length": 240, "header": "tr|F2Z4Y6-1|F2Z4Y6_PIG Isoform 1 of Beta-crystallin A4 OS=Sus scrofa OX=9823 GN=CRYBA4 PE=1 SV=6 CANONICAL=F2Z4Y6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZSI1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6/entry#A0A286ZSI1-1", "sequence": { "sequence": "MSLQCTKSAGHWKIVVWDEEGFQGRRHEFTAECPSVLELGFETVRSLKVLSGAWVGFEHAGFQGQQYVLERGEYPSWDAWSGNTAYPAERLTSFRPVACANHRDSRLTIFEQENFLGKKGELSDDYPSLQAMGWDGNEVGSFHVHSGAWVCSQFPGYRGFQYVLECDHHSGDYKHFREWGSHAQTFQVQSIRRIQQ", "length": 196, "header": "tr|A0A286ZSI1-1|F2Z4Y6_PIG Computationally mapped isoform of Beta-crystallin A4 OS=Sus scrofa OX=9823 GN=CRYBA4 PE=1 SV=2 CANONICAL=F2Z4Y6-1" }, "locus": { "chromosome": "14", "start_pos": 44218979, "end_pos": 44212690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058711.3", "url": "https://www.ensembl.org/id/ENSSSCT00000058711.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034611.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034611.2" } ] } }, { "isoform_ac": "A0A8W4FJX1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6/entry#A0A8W4FJX1-1", "sequence": { "sequence": "SDSLLSLILADTKPCGLWHKRGAGSAGPRQGVGAPQAPTQPGYCREQHFPLWAQHIVVWDEEGFQGRRHEFTAECPSVLELGFETVRSLKVLSGAWVGFEHAGFQGQQYVLERGEYPSWDAWSGNTAYPAERLTSFRPVACANHRDSRLTIFEQENFLGKKGELSDDYPSLQAMGWDGNEVGSFHVHSGAWVCSQFPGYRGFQYVLECDHHSGDYKHFREWGSHAQTFQVQSIRRIQQ", "length": 238, "header": "tr|A0A8W4FJX1-1|F2Z4Y6_PIG Computationally mapped isoform of Beta-crystallin A4 OS=Sus scrofa OX=9823 GN=CRYBA4 PE=1 SV=1 CANONICAL=F2Z4Y6-1" }, "locus": { "chromosome": "14", "start_pos": 44218979, "end_pos": 44208024, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100297.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100297.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079521.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079521.1" } ] } }, { "isoform_ac": "F2Z4Y6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6/entry#F2Z4Y6-1", "sequence": { "sequence": "MDQPALHASLPSALHPSPVRHKRGAGSAGPRQGVGAPQAPTQPGYCREQHFPLWAQHIVVWDEEGFQGRRHEFTAECPSVLELGFETVRSLKVLSGAWVGFEHAGFQGQQYVLERGEYPSWDAWSGNTAYPAERLTSFRPVACANHRDSRLTIFEQENFLGKKGELSDDYPSLQAMGWDGNEVGSFHVHSGAWVCSQFPGYRGFQYVLECDHHSGDYKHFREWGSHAQTFQVQSIRRIQQ", "length": 240, "header": "tr|F2Z4Y6-1|F2Z4Y6_PIG Isoform 1 of Beta-crystallin A4 OS=Sus scrofa OX=9823 GN=CRYBA4 PE=1 SV=6 CANONICAL=F2Z4Y6-1" }, "locus": { "chromosome": "14", "start_pos": 44218979, "end_pos": 44194592, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010921.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010921.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010636.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010636.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZSI1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZSI1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152041", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152041", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "visual perception", "id": "GO:0007601", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007601", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y6", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6" } ], "pmid": "" }, { "name": "lens development in camera-type eye", "id": "GO:0002088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002088", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y6", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6" } ], "pmid": "" }, { "name": "camera-type eye development", "id": "GO:0043010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043010", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y6", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural constituent of eye lens", "id": "GO:0005212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005212", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y6", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y6", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z4Y6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 240, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z4Y6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z4Y6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z4Y6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y6" }, { "id": "PS50915", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50915" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta/gamma crystallin 'Greek key'", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 95, "start_aa": "Gln", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQP4-1", "uniprot_ac": "F1SQP4", "uniprot_id": "F1SQP4_PIG", "mass": { "chemical_mass": 17136.0, "monoisotopic_mass": 17136.0 }, "refseq": { "ac": "XP_003126763", "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126763" }, "gene_names": [ { "name": "NDUFA12", "type": "recommended", "evidence": [ { "id": "F1SQP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQP4" } ] }, { "name": "NDUFA12", "type": "synonym", "evidence": [ { "id": "XP_003126763", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126763" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "type": "recommended", "evidence": [ { "id": "F1SQP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQP4/entry#names_and_taxonomy" } ] }, { "name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "type": "synonym", "evidence": [ { "id": "XP_003126763", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126763" } ] } ], "function": [ { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZTC8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTC8#function" }, { "database": "UniProtKB", "id": "RU363103", "url": "https://www.uniprot.org/uniprotkb/RU363103#function" }, { "database": "UniProtKB", "id": "A0A5G2QQP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQP8#function" }, { "database": "UniProtKB", "id": "A0A5G2QB28", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB28#function" }, { "database": "UniProtKB", "id": "A0A5G2QM44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM44#function" }, { "database": "UniProtKB", "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFA12", "url": "https://www.uniprot.org/uniprotkb/F1SQP4", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000000905", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000905", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518016", "url": "https://www.ncbi.nlm.nih.gov/gene/100518016", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "5GUP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GUP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V30&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V33&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V3M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VB7", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VB7&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VWJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VWJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYA", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYA&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYF", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYF&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZ1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZ1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W00&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1T&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1V&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1Z&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W20&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W35&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4J&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4N&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4Q&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UD1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UD1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UER", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UER&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UES", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UES&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UET", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UET&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEX", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEX&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEY", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEY&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UEZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UEZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8UGR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZO8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZOU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZP8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSK&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSM&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZXZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BUH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BWD&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9BXV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CD6&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CDN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CE2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6W&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR007763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518016", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518016", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VIYTAEM", "url": "https://omabrowser.org/oma/group/VIYTAEM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQP4", "url": "https://www.orthodb.org/?gene=F1SQP4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12910", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12910", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12910:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12910:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005gup", "url": "https://www.rcsb.org/structure/pdb_00005gup", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2c", "url": "https://www.rcsb.org/structure/pdb_00007v2c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2d", "url": "https://www.rcsb.org/structure/pdb_00007v2d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2e", "url": "https://www.rcsb.org/structure/pdb_00007v2e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2f", "url": "https://www.rcsb.org/structure/pdb_00007v2f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2h", "url": "https://www.rcsb.org/structure/pdb_00007v2h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2k", "url": "https://www.rcsb.org/structure/pdb_00007v2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2r", "url": "https://www.rcsb.org/structure/pdb_00007v2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v30", "url": "https://www.rcsb.org/structure/pdb_00007v30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v31", "url": "https://www.rcsb.org/structure/pdb_00007v31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v32", "url": "https://www.rcsb.org/structure/pdb_00007v32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v33", "url": "https://www.rcsb.org/structure/pdb_00007v33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v3m", "url": "https://www.rcsb.org/structure/pdb_00007v3m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vb7", "url": "https://www.rcsb.org/structure/pdb_00007vb7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbn", "url": "https://www.rcsb.org/structure/pdb_00007vbn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbz", "url": "https://www.rcsb.org/structure/pdb_00007vbz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vwj", "url": "https://www.rcsb.org/structure/pdb_00007vwj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxp", "url": "https://www.rcsb.org/structure/pdb_00007vxp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxu", "url": "https://www.rcsb.org/structure/pdb_00007vxu", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy8", "url": "https://www.rcsb.org/structure/pdb_00007vy8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vya", "url": "https://www.rcsb.org/structure/pdb_00007vya", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyf", "url": "https://www.rcsb.org/structure/pdb_00007vyf", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyh", "url": "https://www.rcsb.org/structure/pdb_00007vyh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyn", "url": "https://www.rcsb.org/structure/pdb_00007vyn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vz1", "url": "https://www.rcsb.org/structure/pdb_00007vz1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzv", "url": "https://www.rcsb.org/structure/pdb_00007vzv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzw", "url": "https://www.rcsb.org/structure/pdb_00007vzw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w00", "url": "https://www.rcsb.org/structure/pdb_00007w00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0h", "url": "https://www.rcsb.org/structure/pdb_00007w0h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0r", "url": "https://www.rcsb.org/structure/pdb_00007w0r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0y", "url": "https://www.rcsb.org/structure/pdb_00007w0y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1o", "url": "https://www.rcsb.org/structure/pdb_00007w1o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1p", "url": "https://www.rcsb.org/structure/pdb_00007w1p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1t", "url": "https://www.rcsb.org/structure/pdb_00007w1t", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1u", "url": "https://www.rcsb.org/structure/pdb_00007w1u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1v", "url": "https://www.rcsb.org/structure/pdb_00007w1v", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1z", "url": "https://www.rcsb.org/structure/pdb_00007w1z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w20", "url": "https://www.rcsb.org/structure/pdb_00007w20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2k", "url": "https://www.rcsb.org/structure/pdb_00007w2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2l", "url": "https://www.rcsb.org/structure/pdb_00007w2l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2r", "url": "https://www.rcsb.org/structure/pdb_00007w2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2u", "url": "https://www.rcsb.org/structure/pdb_00007w2u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2y", "url": "https://www.rcsb.org/structure/pdb_00007w2y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w31", "url": "https://www.rcsb.org/structure/pdb_00007w31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w32", "url": "https://www.rcsb.org/structure/pdb_00007w32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w35", "url": "https://www.rcsb.org/structure/pdb_00007w35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4c", "url": "https://www.rcsb.org/structure/pdb_00007w4c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4d", "url": "https://www.rcsb.org/structure/pdb_00007w4d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4e", "url": "https://www.rcsb.org/structure/pdb_00007w4e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4f", "url": "https://www.rcsb.org/structure/pdb_00007w4f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4g", "url": "https://www.rcsb.org/structure/pdb_00007w4g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4j", "url": "https://www.rcsb.org/structure/pdb_00007w4j", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4k", "url": "https://www.rcsb.org/structure/pdb_00007w4k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4l", "url": "https://www.rcsb.org/structure/pdb_00007w4l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4m", "url": "https://www.rcsb.org/structure/pdb_00007w4m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4n", "url": "https://www.rcsb.org/structure/pdb_00007w4n", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4q", "url": "https://www.rcsb.org/structure/pdb_00007w4q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ud1", "url": "https://www.rcsb.org/structure/pdb_00008ud1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueo", "url": "https://www.rcsb.org/structure/pdb_00008ueo", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uep", "url": "https://www.rcsb.org/structure/pdb_00008uep", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueq", "url": "https://www.rcsb.org/structure/pdb_00008ueq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uer", "url": "https://www.rcsb.org/structure/pdb_00008uer", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ues", "url": "https://www.rcsb.org/structure/pdb_00008ues", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uet", "url": "https://www.rcsb.org/structure/pdb_00008uet", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ueu", "url": "https://www.rcsb.org/structure/pdb_00008ueu", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uev", "url": "https://www.rcsb.org/structure/pdb_00008uev", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uew", "url": "https://www.rcsb.org/structure/pdb_00008uew", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uex", "url": "https://www.rcsb.org/structure/pdb_00008uex", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uey", "url": "https://www.rcsb.org/structure/pdb_00008uey", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008uez", "url": "https://www.rcsb.org/structure/pdb_00008uez", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugh", "url": "https://www.rcsb.org/structure/pdb_00008ugh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugi", "url": "https://www.rcsb.org/structure/pdb_00008ugi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugj", "url": "https://www.rcsb.org/structure/pdb_00008ugj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugn", "url": "https://www.rcsb.org/structure/pdb_00008ugn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008ugr", "url": "https://www.rcsb.org/structure/pdb_00008ugr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zo8", "url": "https://www.rcsb.org/structure/pdb_00008zo8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zou", "url": "https://www.rcsb.org/structure/pdb_00008zou", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zp8", "url": "https://www.rcsb.org/structure/pdb_00008zp8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsk", "url": "https://www.rcsb.org/structure/pdb_00008zsk", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsl", "url": "https://www.rcsb.org/structure/pdb_00008zsl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsm", "url": "https://www.rcsb.org/structure/pdb_00008zsm", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsn", "url": "https://www.rcsb.org/structure/pdb_00008zsn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zso", "url": "https://www.rcsb.org/structure/pdb_00008zso", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsq", "url": "https://www.rcsb.org/structure/pdb_00008zsq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsr", "url": "https://www.rcsb.org/structure/pdb_00008zsr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zxz", "url": "https://www.rcsb.org/structure/pdb_00008zxz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009buh", "url": "https://www.rcsb.org/structure/pdb_00009buh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bwd", "url": "https://www.rcsb.org/structure/pdb_00009bwd", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009bxv", "url": "https://www.rcsb.org/structure/pdb_00009bxv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cd6", "url": "https://www.rcsb.org/structure/pdb_00009cd6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009cdn", "url": "https://www.rcsb.org/structure/pdb_00009cdn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009ce2", "url": "https://www.rcsb.org/structure/pdb_00009ce2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6h", "url": "https://www.rcsb.org/structure/pdb_00009j6h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6w", "url": "https://www.rcsb.org/structure/pdb_00009j6w", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.rcsb.org/structure/5GUP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.rcsb.org/structure/7V2C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.rcsb.org/structure/7V2D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.rcsb.org/structure/7V2E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.rcsb.org/structure/7V2F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.rcsb.org/structure/7V2H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.rcsb.org/structure/7V2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.rcsb.org/structure/7V2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.rcsb.org/structure/7V30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.rcsb.org/structure/7V31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.rcsb.org/structure/7V32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.rcsb.org/structure/7V33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.rcsb.org/structure/7V3M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VB7", "url": "https://www.rcsb.org/structure/7VB7", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBN", "url": "https://www.rcsb.org/structure/7VBN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBZ", "url": "https://www.rcsb.org/structure/7VBZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VWJ", "url": "https://www.rcsb.org/structure/7VWJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXP", "url": "https://www.rcsb.org/structure/7VXP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXU", "url": "https://www.rcsb.org/structure/7VXU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY8", "url": "https://www.rcsb.org/structure/7VY8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYA", "url": "https://www.rcsb.org/structure/7VYA", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYF", "url": "https://www.rcsb.org/structure/7VYF", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYH", "url": "https://www.rcsb.org/structure/7VYH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYN", "url": "https://www.rcsb.org/structure/7VYN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZ1", "url": "https://www.rcsb.org/structure/7VZ1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.rcsb.org/structure/7VZV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.rcsb.org/structure/7VZW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.rcsb.org/structure/7W00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.rcsb.org/structure/7W0H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.rcsb.org/structure/7W0R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.rcsb.org/structure/7W0Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.rcsb.org/structure/7W1O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.rcsb.org/structure/7W1P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.rcsb.org/structure/7W1T", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.rcsb.org/structure/7W1U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.rcsb.org/structure/7W1V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.rcsb.org/structure/7W1Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.rcsb.org/structure/7W20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.rcsb.org/structure/7W2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.rcsb.org/structure/7W2L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.rcsb.org/structure/7W2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.rcsb.org/structure/7W2U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.rcsb.org/structure/7W2Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.rcsb.org/structure/7W31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.rcsb.org/structure/7W32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.rcsb.org/structure/7W35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.rcsb.org/structure/7W4C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.rcsb.org/structure/7W4D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.rcsb.org/structure/7W4E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.rcsb.org/structure/7W4F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.rcsb.org/structure/7W4G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.rcsb.org/structure/7W4J", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.rcsb.org/structure/7W4K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.rcsb.org/structure/7W4L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.rcsb.org/structure/7W4M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.rcsb.org/structure/7W4N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.rcsb.org/structure/7W4Q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UD1", "url": "https://www.rcsb.org/structure/8UD1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEO", "url": "https://www.rcsb.org/structure/8UEO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEP", "url": "https://www.rcsb.org/structure/8UEP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEQ", "url": "https://www.rcsb.org/structure/8UEQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UER", "url": "https://www.rcsb.org/structure/8UER", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UES", "url": "https://www.rcsb.org/structure/8UES", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UET", "url": "https://www.rcsb.org/structure/8UET", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEU", "url": "https://www.rcsb.org/structure/8UEU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEV", "url": "https://www.rcsb.org/structure/8UEV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEW", "url": "https://www.rcsb.org/structure/8UEW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEX", "url": "https://www.rcsb.org/structure/8UEX", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEY", "url": "https://www.rcsb.org/structure/8UEY", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UEZ", "url": "https://www.rcsb.org/structure/8UEZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGH", "url": "https://www.rcsb.org/structure/8UGH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGI", "url": "https://www.rcsb.org/structure/8UGI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGJ", "url": "https://www.rcsb.org/structure/8UGJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGN", "url": "https://www.rcsb.org/structure/8UGN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8UGR", "url": "https://www.rcsb.org/structure/8UGR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZO8", "url": "https://www.rcsb.org/structure/8ZO8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.rcsb.org/structure/8ZOU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.rcsb.org/structure/8ZP8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.rcsb.org/structure/8ZSK", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.rcsb.org/structure/8ZSL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.rcsb.org/structure/8ZSM", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.rcsb.org/structure/8ZSN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.rcsb.org/structure/8ZSO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.rcsb.org/structure/8ZSQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.rcsb.org/structure/8ZSR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.rcsb.org/structure/8ZXZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BUH", "url": "https://www.rcsb.org/structure/9BUH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BWD", "url": "https://www.rcsb.org/structure/9BWD", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9BXV", "url": "https://www.rcsb.org/structure/9BXV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CD6", "url": "https://www.rcsb.org/structure/9CD6", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CDN", "url": "https://www.rcsb.org/structure/9CDN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.rcsb.org/structure/9CE2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.rcsb.org/structure/9J6H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.rcsb.org/structure/9J6W", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF05071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6799198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126763", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126763", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZTC8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTC8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB28", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QB28-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QB28-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM44", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM44-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQP8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQP8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQP8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQP8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMTDDPPTTKPPTARKYIWTNHKFNVSGTPQQYVPYSTTRKKIQEWVPPSTPYK", "length": 145, "header": "tr|F1SQP4-1|F1SQP4_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Sus scrofa OX=9823 GN=NDUFA12 PE=1 SV=2 CANONICAL=F1SQP4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZTC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP4/entry#A0A286ZTC8-1", "sequence": { "sequence": "MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGRDTFWDVDGSMVPPECRSLMDFKLELHEPEQPEQTETPASASSI", "length": 114, "header": "tr|A0A286ZTC8-1|F1SQP4_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Sus scrofa OX=9823 GN=NDUFA12 PE=1 SV=1 CANONICAL=F1SQP4-1" }, "locus": { "chromosome": "5", "start_pos": 88316005, "end_pos": 88292863, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053443.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053443.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034902.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034902.1" } ] } }, { "isoform_ac": "A0A5G2QB28-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP4/entry#A0A5G2QB28-1", "sequence": { "sequence": "MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGRDTFWDVDGSMVPPEWAAPAADGGSEARGQIRAVAAGLCQSRIHARSSRICDPHHSSQQRWILNPLSEARDGTRNSFPLRHAGSSKPQSSLTWPSTTAAQLLGLHSYHTLVFPVH", "length": 185, "header": "tr|A0A5G2QB28-1|F1SQP4_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Sus scrofa OX=9823 GN=NDUFA12 PE=1 SV=1 CANONICAL=F1SQP4-1" }, "locus": { "chromosome": "5", "start_pos": 88307384, "end_pos": 88292863, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087211.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087211.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060635.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060635.1" } ] } }, { "isoform_ac": "A0A5G2QM44-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP4/entry#A0A5G2QM44-1", "sequence": { "sequence": "MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGIVGFIV", "length": 63, "header": "tr|A0A5G2QM44-1|F1SQP4_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Sus scrofa OX=9823 GN=NDUFA12 PE=1 SV=2 CANONICAL=F1SQP4-1" }, "locus": { "chromosome": "5", "start_pos": 88316848, "end_pos": 88292863, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071189.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071189.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065947.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065947.2" } ] } }, { "isoform_ac": "A0A5G2QQP8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP4/entry#A0A5G2QQP8-1", "sequence": { "sequence": "MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGDEGQLVNFVTIYVALFFFFFFFFCSFVFLGLHLRHMEVPG", "length": 97, "header": "tr|A0A5G2QQP8-1|F1SQP4_PIG Computationally mapped isoform of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Sus scrofa OX=9823 GN=NDUFA12 PE=1 SV=2 CANONICAL=F1SQP4-1" }, "locus": { "chromosome": "5", "start_pos": 88294345, "end_pos": 88292863, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090742.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090742.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067237.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067237.2" } ] } }, { "isoform_ac": "F1SQP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP4/entry#F1SQP4-1", "sequence": { "sequence": "MELVQVLRRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGRDTFWDVDGSMVPPEWHRWLHCMTDDPPTTKPPTARKYIWTNHKFNVSGTPQQYVPYSTTRKKIQEWVPPSTPYK", "length": 145, "header": "tr|F1SQP4-1|F1SQP4_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Sus scrofa OX=9823 GN=NDUFA12 PE=1 SV=2 CANONICAL=F1SQP4-1" }, "locus": { "chromosome": "5", "start_pos": 88317006, "end_pos": 88292863, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000989.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000989.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000968.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000968.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structure of Mammalian Respiratory Supercomplex I1III2IV1.", "journal": "Cell", "date": "2016", "authors": "Wu Meng, Gu Jinke, Guo Runyu, Huang Yushen, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4" } ], "reference": [ { "type": "PubMed", "id": "27912063", "url": "https://glygen.org/publication/PubMed/27912063" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "The coupling mechanism of mammalian mitochondrial complex I.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Gu Jinke, Liu Tianya, Guo Runyu, Zhang Laixing, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4" } ], "reference": [ { "type": "PubMed", "id": "35145322", "url": "https://glygen.org/publication/PubMed/35145322" } ] }, { "title": "High-resolution in situ structures of mammalian respiratory supercomplexes.", "journal": "Nature", "date": "2024", "authors": "Zheng Wan, Chai Pengxin, Zhu Jiapeng, Zhang Kai", "evidence": [ { "database": "UniProtKB", "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4" } ], "reference": [ { "type": "PubMed", "id": "38811722", "url": "https://glygen.org/publication/PubMed/38811722" } ] } ], "pathway": [ { "id": "ssc:100518016", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518016", "resource": "KEGG Pathway" }, { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N3G4-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "gene_name": "Ndufa12", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKKMELLQVLRRGLHQVTGHGGLRGFLKVFFRANDVKLGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTKPPIAHKFIWANHKFNVSGTPEQYVPYSTTRKKIHEWVPPSTPYK", "length": 149 }, "evidence": [ { "id": "F1SQP4", "url": "https://omabrowser.org/oma/group/F1SQP4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1LXA0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "gene_name": "Ndufa12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TQFRMEQLRVLKRGLQQVTGHGGLRGLLRVFFRANDIRLGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTKPLTARKFIWTNHKFNVSATPEQYVPYSTTRKKIQEWVPPSTPYK", "length": 149 }, "evidence": [ { "id": "F1SQP4", "url": "https://omabrowser.org/oma/group/F1SQP4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NW95-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "gene_name": "NDUFA12", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAEYVQVVKRAFKHLGGHGGVRGAILQLLRVNDLKTGTLVGVDKYGNKYYEDKRNFFGRHRWVVYTSEMNGKNTFWEVDGSMVPPEWHRWLHSMTDDPPTTHPPVARKFIWENHKFNLSGTPGQYVPYSTTRKKIQEWIPPTTASK", "length": 146 }, "evidence": [ { "id": "F1SQP4", "url": "https://omabrowser.org/oma/group/F1SQP4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q7TMF3-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "gene_name": "Ndufa12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELVEVLKRGVQQVTGHGGLRGLLRVFFRANDIRIGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSATPEQYVPYSTTRKKIHEWVPPSTPYK", "length": 145 }, "evidence": [ { "id": "F1SQP4", "url": "https://omabrowser.org/oma/group/F1SQP4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UI09-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12", "gene_name": "NDUFA12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MELVQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYSTTRKKIQEWIPPSTPYK", "length": 145 }, "evidence": [ { "id": "F1SQP4", "url": "https://omabrowser.org/oma/group/F1SQP4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "respiratory electron transport chain", "id": "GO:0022904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022904", "evidence": [ { "database": "UniProtKB", "id": "F1SQP4", "url": "https://www.uniprot.org/uniprotkb/F1SQP4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 116, "end_pos": 118 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSM9-1", "uniprot_ac": "F1SSM9", "uniprot_id": "F1SSM9_PIG", "mass": { "chemical_mass": 85898.0, "monoisotopic_mass": 85898.0 }, "refseq": {}, "gene_names": [ { "name": "CHPF2", "type": "recommended", "evidence": [ { "id": "F1SSM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM9" } ] }, { "name": "SMARCD3", "type": "recommended", "evidence": [ { "id": "F1SSM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM9" } ] }, { "name": "CHPF2", "type": "synonym", "evidence": [ { "id": "F1SSM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM9" } ] } ], "protein_names": [ { "name": "Hexosyltransferase", "type": "recommended", "evidence": [ { "id": "F1SSM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM9/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.-", "type": "synonym", "evidence": [ { "id": "F1SSM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSM9", "url": "https://www.uniprot.org/uniprotkb/F1SSM9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CHPF2", "url": "https://www.uniprot.org/uniprotkb/F1SSM9", "locus": { "chromosome": "18", "start_pos": 5986830, "end_pos": 5994909, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016436", "url": "https://www.ensembl.org/id/ENSSSCG00000016436" } ] } } ], "crossref": [ { "id": "F1SSM9", "url": "https://alphafold.ebi.ac.uk/entry/F1SSM9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016435", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016435", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000016436", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016436", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008428", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008428", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YLNRVRM", "url": "https://omabrowser.org/oma/group/YLNRVRM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12369:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12369:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZTV3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZTV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTV3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLV9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSM9", "url": "https://www.uniprot.org/uniprotkb/F1SSM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSM9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGEPGGPQHPDSRTQLDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARPPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRTEEFIGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGIGCVSQHQGQQYRSFELAKNRDPEKEGSAAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWPIGLPAPFTPRSRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGDAVETALEQLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDLLLEAVTQRGHRRALARRVSLLRPLSRVEILPMPYVTEATRVQLVLPLLVAEAAAAPAFLEAFAASVLEPREHALLTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPALAPQRSPPGPPGAGPDPPSPPGADPSRGAPVGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQEQANST", "length": 772, "header": "tr|F1SSM9-1|F1SSM9_PIG Isoform 1 of Hexosyltransferase OS=Sus scrofa OX=9823 GN=CHPF2 PE=3 SV=2 CANONICAL=F1SSM9-1" }, "isoforms": [ { "isoform_ac": "A0A286ZTV3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM9/entry#A0A286ZTV3-1", "sequence": { "sequence": "MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGEPGGPQHPDSRTQLDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDLLLEAVTQRGHRRALARRVSLLRPLSRVEILPMPYVTEATRVQLVLPLLVAEAAAAPAFLEAFAASVLEPREHALLTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPALAPQRSPPGPPGAGPDPPSPPGADPSRGAPVGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQEQANST", "length": 498, "header": "tr|A0A286ZTV3-1|F1SSM9_PIG Computationally mapped isoform of Hexosyltransferase OS=Sus scrofa OX=9823 GN=CHPF2 PE=3 SV=2 CANONICAL=F1SSM9-1" }, "locus": { "chromosome": "18", "start_pos": 5993439, "end_pos": 5989218, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060990.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060990.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034915.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034915.2" } ] } }, { "isoform_ac": "A0A8W4FLV9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM9/entry#A0A8W4FLV9-1", "sequence": { "sequence": "MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGEPGGPQHPDSRTQLDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARPPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRTEEFIGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGIGCVSQHQGQQYRSFELAKNRDPEKEGSAAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWGPGAHSSARAQGS", "length": 369, "header": "tr|A0A8W4FLV9-1|F1SSM9_PIG Computationally mapped isoform of Hexosyltransferase OS=Sus scrofa OX=9823 GN=CHPF2 PE=3 SV=1 CANONICAL=F1SSM9-1" }, "locus": { "chromosome": "18", "start_pos": 5993439, "end_pos": 5988818, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094242.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094242.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080467.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080467.1" } ] } }, { "isoform_ac": "F1SSM9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM9/entry#F1SSM9-1", "sequence": { "sequence": "MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGEPGGPQHPDSRTQLDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARPPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRTEEFIGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGIGCVSQHQGQQYRSFELAKNRDPEKEGSAAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWPIGLPAPFTPRSRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGDAVETALEQLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDLLLEAVTQRGHRRALARRVSLLRPLSRVEILPMPYVTEATRVQLVLPLLVAEAAAAPAFLEAFAASVLEPREHALLTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPALAPQRSPPGPPGAGPDPPSPPGADPSRGAPVGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQEQANST", "length": 772, "header": "tr|F1SSM9-1|F1SSM9_PIG Isoform 1 of Hexosyltransferase OS=Sus scrofa OX=9823 GN=CHPF2 PE=3 SV=2 CANONICAL=F1SSM9-1" }, "locus": { "chromosome": "18", "start_pos": 5993439, "end_pos": 5989218, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017897.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017897.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017416.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017416.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZTV3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZTV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2022870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022870", "resource": "Reactome", "description": "CS-GAG biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1RW56-1", "protein_name": "Hexosyltransferase", "gene_name": "CHPF2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLAALLAALRPALPLVLGLSLGCSLSLLRASWSQGGGEELCLGAAGRAELPGVAQPEAAEAWPGQGHEDFRPRIVPYYRDPNKPYKKVLRTRYIQTELGFHERLFVAVLTSRATLNTLAVAVNKTIAHHFSRLLYFTGLRSAKVPHGMVLVAHGDERPIWLMYETMYYIHQHFGSDYDWFYIMQDDTYAQAEQVKALVTHLSINQDVYLGRAEEFIGGDEQARYCHGGFGYLLSRSLLLKLHPHLDSCRNEILSVRPDEWLGRCIIDFLGIACVSQLQGQHYRTYELAKNADPEKEEEEEFQAAIAVHPVSDMTLMYRLHKHFSRIQLERAYQEIQELQMQIRNLTSLTPAGEASLTWPVGINSPFLPKSRFEVISWDYFTEQHLFSCLDGSPKCELSGASKADVSDIIESALEQLNSRYQPLLRFSKRQLLNGYRRFDPTRGMEYTLDLLLEAVTQKGHSHVLVKRVSLVRPLSKVEIIPMPYVTEATRVQLVLPLTVQDLDFVSNFLDMYAMNTLDTHDNALLTLLFIYHPYDAQRVSQVDVFAGVKAMIGELEKRYTEVKIPWISVKTEVPSQVKLMDIVSKKHPVDTLFFLASVWTEINMEFLNRCRMNTISNWQVFFPVHFQEFNPALVYRGEQTASSSTDFLRDGHFDRHSFAEACFYNSDYMTARTKLAADILDRDEVLESMEVFDVFLHYSGLHLFRAVEPGLVQKYALRSCNPRLSEELYHRCVLSNLEGLASRSHLAMALFEQEQANST", "length": 760 }, "evidence": [ { "id": "F1SSM9", "url": "https://omabrowser.org/oma/group/F1SSM9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1B9D0-1", "protein_name": "Hexosyltransferase", "gene_name": "CHPF2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGPTAMRLSSVLALLRPALPLILGLSLGCSLSLLRVSWIQGEGDDPCVEAVGKAGGPQSLDSRTQLDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARTPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRAEEFIGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGIGCVSQHQGQRYRSFELAKNRDPETESSLAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTALTPEGEAGLSWPLGLPAPFTPHSRFEVLGWDYFTEQHTFSCVDGAPKCPLQGASRADVGDAVETALEQLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDLLLEAVTQRGHRRALARRVSLLRPLSRVEILPMPYVTEATRVQLVLPLQAAEAAAAPTFLEAFAAGVLEPREHALLTLLLVYGPREGGRGAPDPFVGVKVAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLATVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPALAPQRPPPGAGPDPPSPPGADPARGAAGGGRFDRQASAEGCFYNADYLAARARLAADLAGQEEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQEQANST", "length": 775 }, "evidence": [ { "id": "F1SSM9", "url": "https://omabrowser.org/oma/group/F1SSM9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1Q679-1", "protein_name": "Hexosyltransferase", "gene_name": "chpf2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRLSSFLAVFRPALPLILGLSLGCSLSLLMVSWTQGDTDEACGDDLGNGRLVHNGHIRDLHNGQEGDGNEDFQPRIVPYHKDPNKPHKKVLRTRYIHTELGIRERLLVGILSSRATLNTLGVAVNKTVAHHFHRTFFFTGLRSAKAPHGMAVIAHGDDRPVWLMYETIRHLHQHHANEYDWFYLAQDDTYTQAERIMELVNHLSAGQDMYMGRAEEFIGGEERARYCHGGYGYLLSRSLLARLQPHLDSCRNDILSVRPDEWLGRCIIDYLGLSCVEKHQEMTYRYFELQKNVDPEREDSAQFKNAFTVHPISEPALMYRLHKRYNQIELDWTYAQIQHLQNQINNISELTPEGKAGATWPIGINPPFRPKTRFEVINWEYFTEEHIYSCGDSSPKCELRGADRADVSSVLETAVGRLNERYQPQLRFRKRRLLNGYRRFDPTRGMEYVLDLALEAFTQKGHSQVIAKRVNLLKPLSAVEIIPMPYVTEATRVQVILPVTAHDQDFVGNFLDMYVMNALDTHDNALLTFLFVYDPFDAQRVSQTDVFAGVKAMIGEVEKRYGDVKIPWISVKTEVPSQVKLMDIISKKHPVDTLFFLASVWTEVNADFLNRCRMNAISNWQVFFPIHFQEYSPALVYRDQQPSAASSFASETLRDGHFDRHVFEEACFYNADYMAARTKMAADILDNDELLESMDVYEIFVRYSGLHVFRAVEPALVQKYVHRECNPRFSEDIYHRCVLSNLEGLASRSHLAMALFEQEQANST", "length": 764 }, "evidence": [ { "id": "F1SSM9", "url": "https://omabrowser.org/oma/group/F1SSM9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3UU43-1", "protein_name": "Chondroitin polymerizing factor 2, non-catalytic subunit", "gene_name": "Chpf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRLSSLLALLRPVLPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGKPGGPQNPDSKNGLDQGDEDFRPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGHAEEFIGTGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDTLGIGCVSQHQGQQYRSFELAKNRDPEKEESPAFLSAFAVHPVPEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWPVGLPAPFTPHSRFEVLGWDYFTEQHTFACADGAPKCPLQGASRADVGDAVDTALEQLNRRYQPRLRFRKQRLLNGYRRFDPARGMEYTLDLLLEAVTQRGHRRSLARRVSLLRPLSRVEILPMPYVTEATRVQLVLPLLVAEAPAALAFLEAFAASVLEPREHALLTLLLVYGPREGRGGPDPFLGVKAAAAELERRYPGARLAWLAVRAEAPSQVRLMDVISKKHPVDTLFFLTTVWTRPGSEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGVPGADPPSPGVDPSRGAPVGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGARTQLAMALFEQEQANST", "length": 768 }, "evidence": [ { "id": "F1SSM9", "url": "https://omabrowser.org/oma/group/F1SSM9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P2E5-1", "protein_name": "Chondroitin polymerizing factor 2, non-catalytic subunit", "gene_name": "CHPF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLSSLLALLRPALPLILGLSLGCSLSLLRVSWIQGEGEDPCVEAVGERGGPQNPDSRARLDQSDEDFKPRIVPYYRDPNKPYKKVLRTRYIQTELGSRERLLVAVLTSRATLSTLAVAVNRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWLMSETLRHLHTHFGADYDWFFIMQDDTYVQAPRLAALAGHLSINQDLYLGRAEEFIGAGEQARYCHGGFGYLLSRSLLLRLRPHLDGCRGDILSARPDEWLGRCLIDSLGVGCVSQHQGQQYRSFELAKNRDPEKEGSSAFLSAFAVHPVSEGTLMYRLHKRFSALELERAYSEIEQLQAQIRNLTVLTPEGEAGLSWPVGLPAPFTPHSRFEVLGWDYFTEQHTFSCADGAPKCPLQGASRADVGDALETALEQLNRRYQPRLRFQKQRLLNGYRRFDPARGMEYTLDLLLECVTQRGHRRALARRVSLLRPLSRVEILPMPYVTEATRVQLVLPLLVAEAAAAPAFLEAFAANVLEPREHALLTLLLVYGPREGGRGAPDPFLGVKAAAAELERRYPGTRLAWLAVRAEAPSQVRLMDVVSKKHPVDTLFFLTTVWTRPGPEVLNRCRMNAISGWQAFFPVHFQEFNPALSPQRSPPGPPGAGPDPPSPPGADPSRGAPIGGRFDRQASAEGCFYNADYLAARARLAGELAGQEEEEALEGLEVMDVFLRFSGLHLFRAVEPGLVQKFSLRDCSPRLSEELYHRCRLSNLEGLGGRAQLAMALFEQEQANST", "length": 772 }, "evidence": [ { "id": "F1SSM9", "url": "https://omabrowser.org/oma/group/F1SSM9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VYH2-1", "protein_name": "Hexosyltransferase", "gene_name": "Chpf", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MRRPFTALNRNHYFVIGLLLGLLLSWHIPEDIWEEECPEEAAENLLIERFGQEFEPHLNLINKPLAAKKPVKNVIRPRYYSSELGIREKLFIGVMTSQEHINTFATAFNRTTAHLVNKIKFFIYADSVKTNYKLKNIVGFTDTRESRRPFHVVKYIADNYLDEYDYFLLVPDTVYVDARKLVKLLYHMSITFDLYMGGARIGLDPSGGGASADGQSNEPPANEEEAPGASDRNYCSLEAGILLSSSVIRKMRNNLERCVRIGSTSDHSVNIGRCVKYASRVAGCQESFQGMRQFSYALDAPGRRHREFSELAKEEAFRNASTVYPVQTPEDFYRLHAYYSKHHLEKVQERGYALEQKSYRIANGSISNKILEIRWPLGVPPPSAPETRHDILTWQLLNGTHNFLPNGNAEHAVATLSRIEAQDFAKVLEIALQYAALKHPRLSYHSLHSAYRKFDATRGMDYQLHLNLQEGSGRSRRLVIKSFEVVKPLGRVEVVPSPYVTESTRIAMLVPAFEHQVPDALLFVEQYERICMQNQDNTFLLLIFMYRLESPSKGDEDPFKALKTLALDLSSKYKTDGSRIAWVSIRLPEQLSEPVDPQSWLLHASMYGPRQLLSLVVADLALPKLGLESLVLLATPGMVFKADFLNRVRMNTIQGFQVYAPIGFQMYPCRWAHFCRECDTCDVSQSSGYFDRHNHDVIAFYSRDYVQARKLLHPQGLPIIRSDLDIDQLLLQPGEETRPPGVESILDMFVAAQHSVHILRGVEPNLRFGQDVRNHLARGGTLPQSVPERCGREQCIHLASRKQIGDAIIRYEDKSILHK", "length": 819 }, "evidence": [ { "id": "F1SSM9", "url": "https://omabrowser.org/oma/group/F1SSM9/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi cisterna membrane", "id": "GO:0032580", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032580", "evidence": [ { "database": "UniProtKB", "id": "F1SSM9", "url": "https://www.uniprot.org/uniprotkb/F1SSM9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "acetylgalactosaminyltransferase activity", "id": "GO:0008376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008376", "evidence": [ { "database": "UniProtKB", "id": "F1SSM9", "url": "https://www.uniprot.org/uniprotkb/F1SSM9" } ], "pmid": "" }, { "name": "N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity", "id": "GO:0050510", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050510", "evidence": [ { "database": "UniProtKB", "id": "F1SSM9", "url": "https://www.uniprot.org/uniprotkb/F1SSM9" } ], "pmid": "" }, { "name": "glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity", "id": "GO:0047238", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047238", "evidence": [ { "database": "UniProtKB", "id": "F1SSM9", "url": "https://www.uniprot.org/uniprotkb/F1SSM9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chondroitin sulfate proteoglycan biosynthetic process", "id": "GO:0050650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050650", "evidence": [ { "database": "UniProtKB", "id": "F1SSM9", "url": "https://www.uniprot.org/uniprotkb/F1SSM9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 770, "end_pos": 772, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1971487", "name": "Chondroitin polymerase complex transfers GalNAc to CS chain", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1971487", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1971487" } ] }, { "id": "R-SSC-1971491", "name": "Chondroitin polymerase complex transfers GlcA to CS chain", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1971491", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1971491" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSM9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 772, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSM9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSM9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 342, "end_pos": 344 }, { "start_pos": 770, "end_pos": 772 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRU0-1", "uniprot_ac": "F1SRU0", "uniprot_id": "F1SRU0_PIG", "mass": { "chemical_mass": 81798.0, "monoisotopic_mass": 81798.0 }, "refseq": {}, "gene_names": [ { "name": "TRPV5", "type": "recommended", "evidence": [ { "id": "F1SRU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ] }, { "name": "TRPV6", "type": "synonym", "evidence": [ { "id": "F1SRU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ] } ], "protein_names": [ { "name": "Transient receptor potential cation channel subfamily V member 5", "type": "recommended", "evidence": [ { "id": "F1SRU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRU0/entry#names_and_taxonomy" } ] }, { "name": "Epithelial calcium channel 1", "type": "synonym", "evidence": [ { "id": "F1SRU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRU0/entry#names_and_taxonomy" } ] }, { "name": "Osm-9-like TRP channel 3", "type": "synonym", "evidence": [ { "id": "F1SRU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRU0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Calcium selective cation channel that mediates Ca(2+) uptake in various tissues, including the intestine. Important for normal Ca(2+) ion homeostasis in the body, including bone and skin. The channel is activated by low internal calcium level, probably including intracellular calcium store depletion, and the current exhibits an inward rectification. Inactivation includes both a rapid Ca(2+)-dependent and a slower Ca(2+)-calmodulin-dependent mechanism; the latter may be regulated by phosphorylation. In vitro, is slowly inhibited by Mg(2+) in a voltage-independent manner. Heteromeric assembly with TRPV5 seems to modify channel properties. TRPV5-TRPV6 heteromultimeric concatemers exhibit voltage-dependent gating.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZUB6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUB6#function" }, { "database": "UniProtKB", "id": "ARBA00054373", "url": "https://www.uniprot.org/uniprotkb/ARBA00054373#function" } ] }, { "annotation": "Constitutively active calcium selective cation channel thought to be involved in Ca(2+) reabsorption in kidney and intestine. Required for normal Ca(2+) reabsorption in the kidney distal convoluted tubules. The channel is activated by low internal calcium level and the current exhibits an inward rectification. A Ca(2+)-dependent feedback regulation includes fast channel inactivation and slow current decay. Heteromeric assembly with TRPV6 seems to modify channel properties. TRPV5-TRPV6 heteromultimeric concatemers exhibit voltage-dependent gating.", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0#function" }, { "database": "UniProtKB", "id": "ARBA00058261", "url": "https://www.uniprot.org/uniprotkb/ARBA00058261#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRPV5", "url": "https://www.uniprot.org/uniprotkb/F1SRU0", "locus": { "chromosome": "18", "start_pos": 7318392, "end_pos": 7284589, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000062134", "url": "https://www.ensembl.org/id/ENSSSCG00000062134" } ] } } ], "crossref": [ { "id": "F1SRU0", "url": "https://alphafold.ebi.ac.uk/entry/F1SRU0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016469", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016469", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22192", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22192", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008345", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008345", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10582", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10582", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10582:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10582:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "29671", "url": "https://www.rhea-db.org/rhea/29671", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZUB6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZUB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRU0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRU0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRTCYSRSGKPQAACSARGSCDEKGYDHSQKAASSGSGRSRGSELIWESPLLLAAKENDVQALTKLLKSEACDVHQKGALGETALHIAALYDNLEAALVLMEAAPELVKEPVTCELCEGQTALHIAIMNQNMNLVKALLTHGASVSARVTGLKFRLSPQNLIYFGEYPLSFAACMGSEEMVRLLIDHGADIRAQDSLGNTVLHILVLQPNKTFACQMYNLLLSYDGRGDHLQSLELVPNHEGLTPFKLAGVEGNTVMFQHLMQKRKHIQWVLGPLTSTLYDLTEIDSSGDEQSLLELLVTSKKREARQILDQTPVKELVSLKWRRYGRRYFWGLAAGYLLYIICFTVCCVYRPLKPWTNNQTDPRDNTLLQQKLLQEAYVTPRDHLRLVGELVSIFGAVIILLIEIPDIFRVGVIRFFGQTILGGPFHVLFITYACMVLVTMVMRLSNTDGEVVPMSFALVLGWCNVMYFARGFHMLGPFTVMIQKMIFGDLMRFCWLMAVVILGFASAFFIIFQTEDPNKLGHFYSYPMALFSTFELFLTIIDGPANYDVDLPFMYSVTYAAFAIIAALLMLNLLIAMMGDTHWRVAHERDELWRAQVVATTVMLERKLPRCLWPRSGICGYKFGLGDRWFLRVEDRQDINRQRVQRYAQAFYNSDSDEDMEKPRLGGPFKPPQSLHLPSVSRSTSRSSTNWERLRQGTMKSELMGVVNRALEDGDSWEYQI", "length": 724, "header": "tr|F1SRU0-1|F1SRU0_PIG Isoform 1 of Transient receptor potential cation channel subfamily V member 5 OS=Sus scrofa OX=9823 GN=TRPV5 PE=3 SV=4 CANONICAL=F1SRU0-1" }, "isoforms": [ { "isoform_ac": "A0A286ZUB6-1", "url": "https://www.uniprot.org/uniprotkb/F1SRU0/entry#A0A286ZUB6-1", "sequence": { "sequence": "MGLPLPKEKGLILCLWRKLCRWFQRQESWAQSQDEQNLLQQKRIWESPLLLAAKENDVQALTKLLKSEACDVHQKGALGETALHIAALYDNLEAALVLMEAAPELVKEPVTCELCEGQTALHIAIMNQNMNLVKALLTHGASVSARVTGLKFRLSPQNLIYFGEYPLSFAACMGSEEMVRLLIDHGADIRAQDSLGNTVLHILVLQPNKTFACQMYNLLLSYDGRGDHLQSLELVPNHEGLTPFKLAGVEGNTVMFQHLMQKRKHIQWVLGPLTSTLYDLTEIDSSGDEQSLLELLVTSKKREARQILDQTPVKELVSLKWRRYGRRYFWGLAAGYLLYIICFTVCCVYRPLKPWTNNQTDPRDNTLLQQKLLQEAYVTPRDHLRLVGELVSIFGAVIILLIEIPDIFRVGVIRFFGQTILGGPFHVLLSPGSSRSPSLLPPQHHLCLHGAGDHGDAALQHRRRGGTHVLRPGAGLVQCHVLRPRIPHAGSLHRHDPEDDFWRSDAILLADGCGHPGLCLSYPMALFSTFELFLTIIDGPANYDVDLPFMYSVTYAAFAIIAALLMLNLLIAMMGDTHWRVAHERDELWRAQVVATTVMLERKLPRCLWPRSGICGYKFGLGDRWFLRVEDRQDINRQRVQRYAQAFYNSDSDEDMEKPRLGGPFKPPQSLHLPSVSRSTSRSSTNWERLRQGTMKSELMGVVNRALEDGDSWEYQI", "length": 717, "header": "tr|A0A286ZUB6-1|F1SRU0_PIG Computationally mapped isoform of Transient receptor potential cation channel subfamily V member 5 OS=Sus scrofa OX=9823 GN=TRPV5 PE=3 SV=2 CANONICAL=F1SRU0-1" }, "locus": { "chromosome": "18", "start_pos": 7348018, "end_pos": 7332729, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057027.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057027.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035081.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035081.2" } ] } }, { "isoform_ac": "F1SRU0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRU0/entry#F1SRU0-1", "sequence": { "sequence": "MSRTCYSRSGKPQAACSARGSCDEKGYDHSQKAASSGSGRSRGSELIWESPLLLAAKENDVQALTKLLKSEACDVHQKGALGETALHIAALYDNLEAALVLMEAAPELVKEPVTCELCEGQTALHIAIMNQNMNLVKALLTHGASVSARVTGLKFRLSPQNLIYFGEYPLSFAACMGSEEMVRLLIDHGADIRAQDSLGNTVLHILVLQPNKTFACQMYNLLLSYDGRGDHLQSLELVPNHEGLTPFKLAGVEGNTVMFQHLMQKRKHIQWVLGPLTSTLYDLTEIDSSGDEQSLLELLVTSKKREARQILDQTPVKELVSLKWRRYGRRYFWGLAAGYLLYIICFTVCCVYRPLKPWTNNQTDPRDNTLLQQKLLQEAYVTPRDHLRLVGELVSIFGAVIILLIEIPDIFRVGVIRFFGQTILGGPFHVLFITYACMVLVTMVMRLSNTDGEVVPMSFALVLGWCNVMYFARGFHMLGPFTVMIQKMIFGDLMRFCWLMAVVILGFASAFFIIFQTEDPNKLGHFYSYPMALFSTFELFLTIIDGPANYDVDLPFMYSVTYAAFAIIAALLMLNLLIAMMGDTHWRVAHERDELWRAQVVATTVMLERKLPRCLWPRSGICGYKFGLGDRWFLRVEDRQDINRQRVQRYAQAFYNSDSDEDMEKPRLGGPFKPPQSLHLPSVSRSTSRSSTNWERLRQGTMKSELMGVVNRALEDGDSWEYQI", "length": 724, "header": "tr|F1SRU0-1|F1SRU0_PIG Isoform 1 of Transient receptor potential cation channel subfamily V member 5 OS=Sus scrofa OX=9823 GN=TRPV5 PE=3 SV=4 CANONICAL=F1SRU0-1" }, "locus": { "chromosome": "18", "start_pos": 7348018, "end_pos": 7332829, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017933.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017933.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017452.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017452.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZUB6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZUB6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "calcium channel activity", "id": "GO:0005262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005262", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "pmid": "" }, { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "pmid": "" }, { "name": "calcium channel complex", "id": "GO:0034704", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034704", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "calcium ion import across plasma membrane", "id": "GO:0098703", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098703", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "pmid": "" }, { "name": "response to calcium ion", "id": "GO:0051592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051592", "evidence": [ { "database": "UniProtKB", "id": "F1SRU0", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29671", "name": "", "equation": "Ca(2+)(in) = Ca(2+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29671", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29671" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRU0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 724, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRU0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRU0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRU0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRU0" }, { "id": "PF00520", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ion transport", "eco_id": "ECO_0000259", "start_pos": 407, "end_pos": 590, "start_aa": "Ile", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 211, "end_pos": 213 }, { "start_pos": 361, "end_pos": 363 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L776-1", "uniprot_ac": "I3L776", "uniprot_id": "I3L776_PIG", "mass": { "chemical_mass": 93957.0, "monoisotopic_mass": 93957.0 }, "refseq": { "ac": "XP_005670270", "name": "SID1 transmembrane family member 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670270" }, "gene_names": [ { "name": "SIDT1", "type": "recommended", "evidence": [ { "id": "I3L776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L776" } ] }, { "name": "SIDT1", "type": "synonym", "evidence": [ { "id": "XP_005670270", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670270" } ] } ], "protein_names": [ { "name": "SID1 transmembrane family member 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005670270", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670270" } ] }, { "name": "SID1 transmembrane family member 1", "type": "synonym", "evidence": [ { "id": "I3L776", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L776/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L776", "url": "https://www.uniprot.org/uniprotkb/I3L776" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SIDT1", "url": "https://www.uniprot.org/uniprotkb/I3L776", "locus": { "chromosome": "13", "start_pos": 146300175, "end_pos": 146396542, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024429", "url": "https://www.ensembl.org/id/ENSSSCG00000024429" } ] } } ], "crossref": [ { "id": "I3L776", "url": "https://alphafold.ebi.ac.uk/entry/I3L776", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024429", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024429", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100625203", "url": "https://www.ncbi.nlm.nih.gov/gene/100625203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR025958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625203", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625203", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZWU6", "url": "https://www.orthodb.org/?gene=A0A286ZWU6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3L776", "url": "https://www.orthodb.org/?gene=I3L776", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12185", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12185", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12185:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12185:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13965", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13965", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005670270", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670270", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZWU6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZWU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L776", "url": "https://www.uniprot.org/uniprotkb/I3L776", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L776-1", "url": "https://www.uniprot.org/uniprotkb/I3L776-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGCTRLALPCALLWLLQAAAPGSPAKSLAQRRDPRDPARGADFDRIYSGTVSLSTENIYSFNYTSQPGQVTAVRVYVNSSSENLDYPVLVVVRQQKGVLSWQVPLLFQGLYQRSYNYQEVSRTLCPSEATNETGPLEQLIFVDVASMAPMGAQYKLLVTKIKHFQLQTNVAFHFTASPSQPQYFLYKFPEDVDSVIIKVMSEKAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSMTKKAAITLQKKDFPGEQFFVVFVIKPEDYTCGGSFFIQEKENQTWNLQRAKNLKVTIVPSIKESVYVKSILLSFLIFFSFYLGCLFIAFVHYIRFQRKSIDGSFGSNDGSGNMSVSHPIAASTPEGSNYGAIDESSSSPGRQMSSSDGGRPCPSDTDSSVDESDFDTMPDIESDKNVIRTKMFLYLSDLSRKDRRIISKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGCLFLLIVLRRDILHRRALEAKDIFAMEYGIPKHFGLFYAMGVALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYAAYASFALVITLTVLGVVFGKNDLWFWIIFSAIHILASLALSTQIYYMGRFKIDVSDTDLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLIMGNLINWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPIPLFCIVATAVVWAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF", "length": 828, "header": "tr|I3L776-1|I3L776_PIG Isoform 1 of SID1 transmembrane family member 1 OS=Sus scrofa OX=9823 GN=SIDT1 PE=3 SV=2 CANONICAL=I3L776-1" }, "isoforms": [ { "isoform_ac": "A0A286ZWU6-1", "url": "https://www.uniprot.org/uniprotkb/I3L776/entry#A0A286ZWU6-1", "sequence": { "sequence": "MRGCTRLALPCALLWLLQAAAPGSPAKSLAQRRDPRDPARGADFDRIYSGTVSLSTENIYSFNYTSQPGQVTAVRVYVNSSSENLDYPVLVVVRQQKGVLSWQVPLLFQGLYQRSYNYQEVSRTLCPSEATNETGPLEQLIFVDVASMAPMGAQYKLLVTKIKHFQLQTNVAFHFTASPSQPQYFLYKFPEDVDSVIIKVMSEKAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSMTKKAAITLQKKDFPGEQFFVVFVIKPEDYTCGGSFFIQEKENQTWNLQRAKNLKVTIVPSIKESVYVKSILLSFLIFFSFYLGCLFIAFVHYIRFQRKSIDGSFGSNDGSGNMSVSHPIAASTPEGSNYGAIDESSSSPGRQMSSSDGGRPCPSDTDSSVDESDFDTMPDIESDKNVIRTKMFLYLSDLSRKDRRIISKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGCLFLLIVLRRDILHRRALEAKDIFAMEYGIPKHFGLFYAMGVALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYAAYASFALVITLTVLGVVFGKNDLWFWIIFSAIHILASLALSTQIYYMGRFKIDLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLIMGNLINWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPIPLFCIVATAVVWAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF", "length": 823, "header": "tr|A0A286ZWU6-1|I3L776_PIG Computationally mapped isoform of SID1 transmembrane family member 1 OS=Sus scrofa OX=9823 GN=SIDT1 PE=3 SV=1 CANONICAL=I3L776-1" }, "locus": { "chromosome": "13", "start_pos": 146395733, "end_pos": 146302166, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039531.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039531.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036161.1", "url": "https://www.ensembl.org/id/ENSSSCP00000036161.1" } ] } }, { "isoform_ac": "I3L776-1", "url": "https://www.uniprot.org/uniprotkb/I3L776/entry#I3L776-1", "sequence": { "sequence": "MRGCTRLALPCALLWLLQAAAPGSPAKSLAQRRDPRDPARGADFDRIYSGTVSLSTENIYSFNYTSQPGQVTAVRVYVNSSSENLDYPVLVVVRQQKGVLSWQVPLLFQGLYQRSYNYQEVSRTLCPSEATNETGPLEQLIFVDVASMAPMGAQYKLLVTKIKHFQLQTNVAFHFTASPSQPQYFLYKFPEDVDSVIIKVMSEKAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSMTKKAAITLQKKDFPGEQFFVVFVIKPEDYTCGGSFFIQEKENQTWNLQRAKNLKVTIVPSIKESVYVKSILLSFLIFFSFYLGCLFIAFVHYIRFQRKSIDGSFGSNDGSGNMSVSHPIAASTPEGSNYGAIDESSSSPGRQMSSSDGGRPCPSDTDSSVDESDFDTMPDIESDKNVIRTKMFLYLSDLSRKDRRIISKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGCLFLLIVLRRDILHRRALEAKDIFAMEYGIPKHFGLFYAMGVALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYAAYASFALVITLTVLGVVFGKNDLWFWIIFSAIHILASLALSTQIYYMGRFKIDVSDTDLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLIMGNLINWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPIPLFCIVATAVVWAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF", "length": 828, "header": "tr|I3L776-1|I3L776_PIG Isoform 1 of SID1 transmembrane family member 1 OS=Sus scrofa OX=9823 GN=SIDT1 PE=3 SV=2 CANONICAL=I3L776-1" }, "locus": { "chromosome": "13", "start_pos": 146395733, "end_pos": 146302166, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031666.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031666.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019880.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019880.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZWU6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625203", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625203", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "I3L776", "url": "https://www.uniprot.org/uniprotkb/I3L776" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L776", "url": "https://www.uniprot.org/uniprotkb/I3L776" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "I3L776", "url": "https://www.uniprot.org/uniprotkb/I3L776" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "cholesterol binding", "id": "GO:0015485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015485", "evidence": [ { "database": "UniProtKB", "id": "I3L776", "url": "https://www.uniprot.org/uniprotkb/I3L776" } ], "pmid": "" }, { "name": "double-stranded RNA binding", "id": "GO:0003725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003725", "evidence": [ { "database": "UniProtKB", "id": "I3L776", "url": "https://www.uniprot.org/uniprotkb/I3L776" } ], "pmid": "" }, { "name": "RNA transmembrane transporter activity", "id": "GO:0051033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051033", "evidence": [ { "database": "UniProtKB", "id": "I3L776", "url": "https://www.uniprot.org/uniprotkb/I3L776" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "RNA transport", "id": "GO:0050658", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050658", "evidence": [ { "database": "UniProtKB", "id": "I3L776", "url": "https://www.uniprot.org/uniprotkb/I3L776" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 348, "end_pos": 350, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" }, { "start_pos": 594, "end_pos": 596, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" }, { "start_pos": 765, "end_pos": 767, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L776-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 828, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L776-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L776" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 }, { "start_pos": 278, "end_pos": 280 }, { "start_pos": 348, "end_pos": 350 }, { "start_pos": 467, "end_pos": 469 }, { "start_pos": 563, "end_pos": 565 }, { "start_pos": 594, "end_pos": 596 }, { "start_pos": 63, "end_pos": 65 }, { "start_pos": 695, "end_pos": 697 }, { "start_pos": 765, "end_pos": 767 }, { "start_pos": 79, "end_pos": 81 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STG5-1", "uniprot_ac": "F1STG5", "uniprot_id": "F1STG5_PIG", "mass": { "chemical_mass": 151066.0, "monoisotopic_mass": 151066.0 }, "refseq": {}, "gene_names": [ { "name": "MAP4K4", "type": "recommended", "evidence": [ { "id": "F1STG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG5" } ] } ], "protein_names": [ { "name": "Mitogen-activated protein kinase kinase kinase kinase 4", "type": "synonym", "evidence": [ { "id": "F1STG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STG5", "url": "https://www.uniprot.org/uniprotkb/F1STG5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAP4K4", "url": "https://www.uniprot.org/uniprotkb/F1STG5", "locus": { "chromosome": "3", "start_pos": 52484274, "end_pos": 52649410, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008164", "url": "https://www.ensembl.org/id/ENSSSCG00000008164" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008164", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008164", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06636", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06636", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518724", "url": "https://www.ncbi.nlm.nih.gov/gene/100518724", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051700", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051700", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A287AFU6", "url": "https://www.orthodb.org/?gene=A0A287AFU6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2RBK4", "url": "https://www.orthodb.org/?gene=A0A5G2RBK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47096", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47096", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47096:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47096:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2559580", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZX49", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZX49-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFU6", "url": "https://www.uniprot.org/uniprotkb/A0A287AFU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5S4", "url": "https://www.uniprot.org/uniprotkb/A0A287B5S4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5S4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5S4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBK4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBK4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STG5", "url": "https://www.uniprot.org/uniprotkb/F1STG5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STG5-1", "url": "https://www.uniprot.org/uniprotkb/F1STG5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRTRKKRGEKDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPGESTLRRDFLRLQQENKERSEALRRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLELLQQQLLQEQAMLLECRWREVEEHRQAERLQRQLQQEQAYLLSLQHDHRRPPPQPPQPPQDRSKPSLHAAEPKAHYEPAERAREVEDRFRKTNHSSPEAQSKQTGRVLEPPVPSRSESFSNGNSEAVHPALQRPAEPQVQWSHLASLKNSVSPVSRSHSFSDPSPPKFAHHHLRSQDPCPPSRSEVPSQSSDPKSEVPDPTQKAWSRSDSDEVPPRVPVRTTSRSPVLSRRDSPLQGGGQQNSQAGQRNSTSSIEPRLLWERVEKLVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFRVRSSSKSEGSPSQRLENAAKKPEDKKEVLRPLKPADLTALAKELRAVEDVRPPHKVTDYSSSSEESGTTDEEDDDVEQEGAEEPTSGPEDTRAASSLNLSNGETESVKTMIVHDDVESEPAVTPSKEGTLIVRQSAVDQKRASHHESNGFAGRIHLLPDLLQQSHSSSTSSTSSSPSSSQPTPTMSPQTPQDKLTTNETQSASSTLQKHKSSSSFTPFIDPRLLQISPSSGTTVTSVVGFSCDGMRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTESGLMLLDRSGQGKVYPLINRRRFQQMDVLEGLNVLVTISGKKDKLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDLEGCVHYKVVKYERIKFLVIALKSSVEVYAWAPKPYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSIKPHAIIILPNTDGMELLVCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQTMGWGEKAIEIRSVETGHLDGVFMHKRAQRLKFLCERNDKVFFASVRSGGSSQVYFMTLGRTSLLSW", "length": 1323, "header": "tr|F1STG5-1|F1STG5_PIG Isoform 1 of Mitogen-activated protein kinase kinase kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP4K4 PE=3 SV=4 CANONICAL=F1STG5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZX49-1", "url": "https://www.uniprot.org/uniprotkb/F1STG5/entry#A0A286ZX49-1", "sequence": { "sequence": "MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRTRKKRGEKDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPGESTLRRDFLRLQQENKERSEALRRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLELLQQQLLQEQAMLLHDHRRPPPQPPQPPQDRSKPSLHAAEPKAHYEPAERAREVPVRTTSRSPVLSRRDSPLQGGGQQNSQAGQRNSTSIEPRLLWERVEKLVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFRVRSSSKSEGSPSQRLENAAKKPEDKKEVLRPLKPADLTALAKELRAVEDVRPPHKVTDYSSSSEESGTTDEEDDDVEQEGAEEPTSGPEDTRAASSLNLSNGETESVKTMIVHDDVESEPAVTPSKEGTLIVRQTQSASSTLQKHKSSSSFTPFIDPRLLQISPSSGTTVTSVVGFSCDGMRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTESGLMLLDRSGQGKVYPLINRRRFQQMDVLEGLNVLVTISGKKDKLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDLEGCVHYKVVKYERIKFLVIALKSSVEVYAWAPKPYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSIKPHAIIILPNTDGMELLVCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQTMGWGEKAIEIRSVETGHLDGVFMHKRAQRLKFLCERNDKVFFASVRSGGSSQVYFMTLGRTSLLSW", "length": 1150, "header": "tr|A0A286ZX49-1|F1STG5_PIG Computationally mapped isoform of Mitogen-activated protein kinase kinase kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP4K4 PE=3 SV=3 CANONICAL=F1STG5-1" }, "locus": { "chromosome": "3", "start_pos": 52649323, "end_pos": 52486629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066117.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066117.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036262.3", "url": "https://www.ensembl.org/id/ENSSSCP00000036262.3" } ] } }, { "isoform_ac": "A0A287AFU6-1", "url": "https://www.uniprot.org/uniprotkb/F1STG5/entry#A0A287AFU6-1", "sequence": { "sequence": "MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRTRKKRGEKDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPGESTLRRDFLRLQQENKERSEALRRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLELLQQQLLQEQAMLLHDHRRPPPQPPQPPQDRSKPSLHAAEPKAHYEPAERAREVEDRFRKTNHSSPEAQSKQTGRVLEPPVPSRSESFSNGNSEAVHPALQRPAEPQVPVRTTSRSPVLSRRDSPLQGGGQQNSQAGQRNSTSSIEPRLLWERVEKLVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFRVRSSSKSEGSPSQRLENAAKKPEDKKEVLRPLKPADLTALAKELRAVEDVRPPHKVTDYSSSSEESGTTDEEDDDVEQEGAEEPTSGPEDTRAASSLNLSNGETESVKTMIVHDDVESEPAVTPSKEGTLIVRQSAVDQKRASHHESNGFAGRIHLLPDLLQQSHSSSTSSTSSSPSSSQPTPTMSPQTPQDKLTTNETQSASSTLQKHKSSSSFTPFIDPRLLQISPSSGTTVTSVVGFSCDGMRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTESGLMLLDRSGQGKVYPLINRRRFQQMDVLEGLNVLVTISGKKDKLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDLEGCVHYKVVKYERIKFLVIALKSSVEVYAWAPKPYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSIKPHAIIILPNTDGMELLVCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQTMGWGEKAIEIRSVETGHLDGVFMHKRAQRLKFLCERNDKVFFASVRSGGSSQVYFMTLGRTSLLSW", "length": 1269, "header": "tr|A0A287AFU6-1|F1STG5_PIG Computationally mapped isoform of Mitogen-activated protein kinase kinase kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP4K4 PE=3 SV=2 CANONICAL=F1STG5-1" }, "locus": { "chromosome": "3", "start_pos": 52649323, "end_pos": 52486629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044338.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044338.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042726.2", "url": "https://www.ensembl.org/id/ENSSSCP00000042726.2" } ] } }, { "isoform_ac": "A0A287B5S4-1", "url": "https://www.uniprot.org/uniprotkb/F1STG5/entry#A0A287B5S4-1", "sequence": { "sequence": "MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRTRKKRGEKDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPGESTLRRDFLRLQQENKERSEALRRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLELLQQQLLQEQAMLLHDHRRPPPQPPQPPQDRSKPSLHAAEPKAHYEPAERAREVQWSHLASLKNSVSPVSRSHSFSDPSPPKFAHHHLRSQDPCPPSRSEVPSQSSDPKSEVPDPTQKAWSRSDSDEVPPRVPVRTTSRSPVLSRRDSPLQGGGQQNSQAGQRNSTSSIEPRLLWERVEKLVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFRVRSSSKSEGSPSQRLENAAKKPEDKKEVLRPLKPAVRIDLTALAKELRAVEDVRPPHKVTDYSSSSEESGTTDEEDDDVEQEGAEEPTSGPEDTRAASSLNLSNGETESVKTMIVHDDVESEPAVTPSKEGTLIVRQTQSASSTLQKHKSSSSFTPFIDPRLLQISPSSGTTVTSVVGFSCDGMRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTESGLMLLDRSGQGKVYPLINRRRFQQMDVLEGLNVLVTISGKKDKLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDLEGCVHYKVVKYERIKFLVIALKSSVEVYAWAPKPYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSIKPHAIIILPNTDGMELLVCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQTMGWGEKAIEIRSVETGHLDGVFMHKRAQRLKFLCERNDKVFFASVRSGGSSQVYFMTLGRTSLLSW", "length": 1232, "header": "tr|A0A287B5S4-1|F1STG5_PIG Computationally mapped isoform of Mitogen-activated protein kinase kinase kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP4K4 PE=3 SV=3 CANONICAL=F1STG5-1" }, "locus": { "chromosome": "3", "start_pos": 52649323, "end_pos": 52486629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047090.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047090.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051858.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051858.3" } ] } }, { "isoform_ac": "A0A5G2RBK4-1", "url": "https://www.uniprot.org/uniprotkb/F1STG5/entry#A0A5G2RBK4-1", "sequence": { "sequence": "MANDSPAKSLVDIDLSSLRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRTRKKRGEKDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPGESTLRRDFLRLQQENKERSEALRRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLELLQQQLLQEQAMLLHDHRRPPPQPPQPPQDRSKPSLHAAEPKAHYEPAERAREVPVRTTSRSPVLSRRDSPLQGGGQQNSQAGQRNSTSIEPRLLWERVEKLVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFRVRSSSKSEGSPSQRLENAAKKPEDKKEVLRPLKPAGEVDLTALAKELRAVEDVRPPHKVTDYSSSSEESGTTDEEDDDVEQEGAEEPTSGPEDTRAASSLNLSNGETESVKTMIVHDDVESEPAVTPSKEGTLIVRQTQSASSTLQKHKSSSSFTPFIDPRLLQISPSSGTTVTSVVGFSCDGMRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTESGLMLLDRSGQGKVYPLINRRRFQQMDVLEGLNVLVTISGKKDKLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDLEGCVHYKVVKYERIKFLVIALKSSVEVYAWAPKPYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHVRKNPHSMIQCSIKPHAIIILPNTDGMELLVCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQTMGWGEKAIEIRSVETGHLDGVFMHKRAQRLKFLCERNDKVFFASVRSGGSSQVYFMTLGRTSLLSW", "length": 1161, "header": "tr|A0A5G2RBK4-1|F1STG5_PIG Computationally mapped isoform of Mitogen-activated protein kinase kinase kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP4K4 PE=3 SV=1 CANONICAL=F1STG5-1" }, "locus": { "chromosome": "3", "start_pos": 52649323, "end_pos": 52486629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078309.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078309.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073720.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073720.1" } ] } }, { "isoform_ac": "F1STG5-1", "url": "https://www.uniprot.org/uniprotkb/F1STG5/entry#F1STG5-1", "sequence": { "sequence": "MDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSITDLVKNTKGNTLKEDWIAYISREILRGLAHLHIHHVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIRDQPNERQVRIQLKDHIDRTRKKRGEKDETEYEYSGSEEEEEEVPEQEGEPSSIVNVPGESTLRRDFLRLQQENKERSEALRRQQLLQEQQLREQEEYKRQLLAERQKRIEQQKEQRRRLEEQQRREREARRQQEREQRRREQEEKRRLEELERRRKEEEERRRAEEEKRRVEREQEYIRRQLEEEQRHLELLQQQLLQEQAMLLECRWREVEEHRQAERLQRQLQQEQAYLLSLQHDHRRPPPQPPQPPQDRSKPSLHAAEPKAHYEPAERAREVEDRFRKTNHSSPEAQSKQTGRVLEPPVPSRSESFSNGNSEAVHPALQRPAEPQVQWSHLASLKNSVSPVSRSHSFSDPSPPKFAHHHLRSQDPCPPSRSEVPSQSSDPKSEVPDPTQKAWSRSDSDEVPPRVPVRTTSRSPVLSRRDSPLQGGGQQNSQAGQRNSTSSIEPRLLWERVEKLVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGERFRVRSSSKSEGSPSQRLENAAKKPEDKKEVLRPLKPADLTALAKELRAVEDVRPPHKVTDYSSSSEESGTTDEEDDDVEQEGAEEPTSGPEDTRAASSLNLSNGETESVKTMIVHDDVESEPAVTPSKEGTLIVRQSAVDQKRASHHESNGFAGRIHLLPDLLQQSHSSSTSSTSSSPSSSQPTPTMSPQTPQDKLTTNETQSASSTLQKHKSSSSFTPFIDPRLLQISPSSGTTVTSVVGFSCDGMRPEAIRQDPTRKGSVVNVNPTNTRPQSDTPEIRKYKKRFNSEILCAALWGVNLLVGTESGLMLLDRSGQGKVYPLINRRRFQQMDVLEGLNVLVTISGKKDKLRVYYLSWLRNKILHNDPEVEKKQGWTTVGDLEGCVHYKVVKYERIKFLVIALKSSVEVYAWAPKPYHKFMAFKSFGELVHKPLLVDLTVEEGQRLKVIYGSCAGFHAVDVDSGSVYDIYLPTHIQCSIKPHAIIILPNTDGMELLVCYEDEGVYVNTYGRITKDVVLQWGEMPTSVAYIRSNQTMGWGEKAIEIRSVETGHLDGVFMHKRAQRLKFLCERNDKVFFASVRSGGSSQVYFMTLGRTSLLSW", "length": 1323, "header": "tr|F1STG5-1|F1STG5_PIG Isoform 1 of Mitogen-activated protein kinase kinase kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP4K4 PE=3 SV=4 CANONICAL=F1STG5-1" }, "locus": { "chromosome": "3", "start_pos": 52572062, "end_pos": 52486629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008941.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008941.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008715.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008715.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 810, "start_aa": "Thr", "end_pos": 810, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr810", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 848, "start_aa": "Thr", "end_pos": 848, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr848", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 907, "start_aa": "Thr", "end_pos": 907, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr907", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 909, "start_aa": "Thr", "end_pos": 909, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr909", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZX49", "url": "https://www.uniprot.org/uniprotkb/A0A286ZX49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2559580", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "resource": "Reactome", "description": "Oxidative Stress Induced Senescence" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1STG5", "url": "https://www.uniprot.org/uniprotkb/F1STG5" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1STG5", "url": "https://www.uniprot.org/uniprotkb/F1STG5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STG5", "url": "https://www.uniprot.org/uniprotkb/F1STG5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "MAPK cascade", "id": "GO:0000165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000165", "evidence": [ { "database": "UniProtKB", "id": "F1STG5", "url": "https://www.uniprot.org/uniprotkb/F1STG5" } ], "pmid": "" }, { "name": "neuron projection morphogenesis", "id": "GO:0048812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048812", "evidence": [ { "database": "UniProtKB", "id": "F1STG5", "url": "https://www.uniprot.org/uniprotkb/F1STG5" } ], "pmid": "" }, { "name": "regulation of MAPK cascade", "id": "GO:0043408", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043408", "evidence": [ { "database": "UniProtKB", "id": "F1STG5", "url": "https://www.uniprot.org/uniprotkb/F1STG5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1255, "end_pos": 1257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" }, { "start_pos": 674, "end_pos": 676, "annotation": "n_glycosylation_sequon" }, { "start_pos": 823, "end_pos": 825, "annotation": "n_glycosylation_sequon" }, { "start_pos": 922, "end_pos": 924, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG5" }, { "id": "PS50219", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50219" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CNH", "eco_id": "ECO_0000259", "start_pos": 1010, "end_pos": 1297, "start_aa": "Asn", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1STG5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG5" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 234, "start_aa": "Met", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 810, 848, 907, 909 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1255, "end_pos": 1257 }, { "start_pos": 518, "end_pos": 520 }, { "start_pos": 674, "end_pos": 676 }, { "start_pos": 823, "end_pos": 825 }, { "start_pos": 922, "end_pos": 924 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z557-1", "uniprot_ac": "F2Z557", "uniprot_id": "F2Z557_PIG", "mass": { "chemical_mass": 70338.0, "monoisotopic_mass": 70338.0 }, "refseq": {}, "gene_names": [ { "name": "PABPC1", "type": "recommended", "evidence": [ { "id": "F2Z557", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ] } ], "protein_names": [ { "name": "Polyadenylate-binding protein", "type": "recommended", "evidence": [ { "id": "F2Z557", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z557/entry#names_and_taxonomy" } ] }, { "name": "PABP", "type": "synonym", "evidence": [ { "id": "F2Z557", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z557/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Binds the poly(A) tail of mRNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZL8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZL8#function" }, { "database": "UniProtKB", "id": "RU362004", "url": "https://www.uniprot.org/uniprotkb/RU362004#function" }, { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PABPC1", "url": "https://www.uniprot.org/uniprotkb/F2Z557", "locus": {} } ], "crossref": [ { "id": "F2Z557", "url": "https://alphafold.ebi.ac.uk/entry/F2Z557", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006063", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006063", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12378", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12378", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12379", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12379", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12380", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12380", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12381", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12381", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002004", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002004", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00658", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00658", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-429947", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429947", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72649", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72649", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZZL8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCY5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGU2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z557-1", "url": "https://www.uniprot.org/uniprotkb/F2Z557-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV", "length": 633, "header": "tr|F2Z557-1|F2Z557_PIG Isoform 1 of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC1 PE=1 SV=2 CANONICAL=F2Z557-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZL8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z557/entry#A0A286ZZL8-1", "sequence": { "sequence": "MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPNTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV", "length": 599, "header": "tr|A0A286ZZL8-1|F2Z557_PIG Computationally mapped isoform of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC1 PE=1 SV=2 CANONICAL=F2Z557-1" }, "locus": { "chromosome": "4", "start_pos": 36226839, "end_pos": 36209670, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046615.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046615.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037095.3", "url": "https://www.ensembl.org/id/ENSSSCP00000037095.3" } ] } }, { "isoform_ac": "A0A8W4FCY5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z557/entry#A0A8W4FCY5-1", "sequence": { "sequence": "MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV", "length": 604, "header": "tr|A0A8W4FCY5-1|F2Z557_PIG Computationally mapped isoform of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC1 PE=1 SV=1 CANONICAL=F2Z557-1" }, "locus": { "chromosome": "4", "start_pos": 36226839, "end_pos": 36209670, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100160.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100160.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077259.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077259.1" } ] } }, { "isoform_ac": "A0A8W4FGU2-1", "url": "https://www.uniprot.org/uniprotkb/F2Z557/entry#A0A8W4FGU2-1", "sequence": { "sequence": "MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV", "length": 590, "header": "tr|A0A8W4FGU2-1|F2Z557_PIG Computationally mapped isoform of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC1 PE=1 SV=1 CANONICAL=F2Z557-1" }, "locus": { "chromosome": "4", "start_pos": 36226839, "end_pos": 36209670, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105799.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105799.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077530.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077530.1" } ] } }, { "isoform_ac": "F2Z557-1", "url": "https://www.uniprot.org/uniprotkb/F2Z557/entry#F2Z557-1", "sequence": { "sequence": "MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV", "length": 633, "header": "tr|F2Z557-1|F2Z557_PIG Isoform 1 of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC1 PE=1 SV=2 CANONICAL=F2Z557-1" }, "locus": { "chromosome": "4", "start_pos": 36226839, "end_pos": 36209670, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032533.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032533.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026891.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026891.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 499, "start_aa": "Thr", "end_pos": 499, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr499", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZL8", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZL8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-429947", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429947", "resource": "Reactome", "description": "Deadenylation of mRNA" }, { "id": "R-SSC-450408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "resource": "Reactome", "description": "AUF1 (hnRNP D0) binds and destabilizes mRNA" }, { "id": "R-SSC-72649", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72649", "resource": "Reactome", "description": "Translation initiation complex formation" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "poly(A) binding", "id": "GO:0008143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008143", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "poly(U) RNA binding", "id": "GO:0008266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008266", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "cell leading edge", "id": "GO:0031252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031252", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "CRD-mediated mRNA stabilization", "id": "GO:0070934", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070934", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "positive regulation of cytoplasmic translation", "id": "GO:2000767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000767", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "positive regulation of viral genome replication", "id": "GO:0045070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045070", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay", "id": "GO:2000623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000623", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" }, { "name": "negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay", "id": "GO:1900152", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900152", "evidence": [ { "database": "UniProtKB", "id": "F2Z557", "url": "https://www.uniprot.org/uniprotkb/F2Z557" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z557-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 633, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z557-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z557" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z557", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z557" }, { "id": "PS51309", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51309" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PABC", "eco_id": "ECO_0000259", "start_pos": 539, "end_pos": 616, "start_aa": "Gln", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z557", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z557" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 89, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 499 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 481, "end_pos": 483 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSF7-1", "uniprot_ac": "F1SSF7", "uniprot_id": "F1SSF7_PIG", "mass": { "chemical_mass": 128066.0, "monoisotopic_mass": 128066.0 }, "refseq": { "ac": "XP_003134934", "name": "adipocyte enhancer-binding protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134934" }, "gene_names": [ { "name": "AEBP1", "type": "recommended", "evidence": [ { "id": "F1SSF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ] }, { "name": "AEBP1", "type": "synonym", "evidence": [ { "id": "XP_003134934", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134934" } ] } ], "protein_names": [ { "name": "Adipocyte enhancer-binding protein 1", "type": "recommended", "evidence": [ { "id": "F1SSF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF7/entry#names_and_taxonomy" } ] }, { "name": "Aortic carboxypeptidase-like protein", "type": "synonym", "evidence": [ { "id": "F1SSF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF7/entry#names_and_taxonomy" } ] }, { "name": "adipocyte enhancer-binding protein 1", "type": "synonym", "evidence": [ { "id": "XP_003134934", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134934" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AEBP1", "url": "https://www.uniprot.org/uniprotkb/F1SSF7", "locus": { "chromosome": "18", "start_pos": 51046899, "end_pos": 51056698, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016754", "url": "https://www.ensembl.org/id/ENSSSCG00000016754" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016754", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016754", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00057", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00057", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11308", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11308", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "733628", "url": "https://www.ncbi.nlm.nih.gov/gene/733628", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000834", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000834", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:733628", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:733628", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VIMYIPE", "url": "https://omabrowser.org/oma/group/VIMYIPE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSF7", "url": "https://www.orthodb.org/?gene=F1SSF7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11532", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11532", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11532:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11532:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00754", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00754", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134934", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134934", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZZM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZM9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZZM9-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZM9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAM1", "url": "https://www.uniprot.org/uniprotkb/A0A287BAM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BAM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BAM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNT7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNT7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNT7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNT7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP15", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP15-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVRGAPLLGCLLALLALCPGGRPQTVLTDDEIEEFLEGFLSELESEPREDDVEAPPPPEPTLPVRKAQAGGKPGARPGVAGEAPPGKAKDKGKKGKKDKGPKATKQPREGSPKPPKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPLAGKKHPIPTPSESPPWPLPPPPSPGLEELPQEGGGAPPNPWEGLGEDDGEHKPEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPSRRRPERLWPERPEEKAEPPRRGFEAPEEKIEPPLKPLPPPLPDYGDGYVIPDYGDLDYYFQPPRPRKPDTGLETDEEKEELKKPKKEGGSRKEEDTDDKWAVDKGKDHKGPRKGEELEEEWAPVEKVKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQAGATEDDYFDGAWCAEDDSQTQWIEVDTRRTTKFTGVITQGRDSSIHDDFVTSFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCPVSSVHSYYAQNEVVTTDDLDFRHHSYKDMRQLMKVVNEQCPTITRTYSLGKSSRGLKIYAMEISDNPGDHELGEPEFRYTAGIHGNEVLGRELLLLLMQYLCREYRDGNPRVRSLVHDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIYEDFPDLNSVLWGAEERKWVPFRVPNNNLPIPERYLSPDATVSTEVRAIIAWMEKNPFVLGANLNGGERLVSYPYDMARTPSQEQLLAAAMAAARGEDEEEVSEAQETPDHAIFRWLAISFASTHLTMTEPYRGGCQAQDYTGGMGIVNGAKWKPRSGTINDFSYLHTNCLELSIYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTPSSKTCNVDYDIGATQCNFILARSNWKRIREIMAMNGNRPIPHIDPSRPMTPQQRRMQHRRLQYRLRMREQMRLRRLNATASLATTPTSPPTTPTLLPMPTLAPSPAPSSTLGPWHVVPETTAAWEESETETYTEVVTEFGTELGPEEEEEEEEGETATGSEFPFTTVETYTVNFGDF", "length": 1140, "header": "tr|F1SSF7-1|F1SSF7_PIG Isoform 1 of Adipocyte enhancer-binding protein 1 OS=Sus scrofa OX=9823 GN=AEBP1 PE=1 SV=1 CANONICAL=F1SSF7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZZM9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF7/entry#A0A286ZZM9-1", "sequence": { "sequence": "MAAVRGAPLLGCLLALLALCPGGRPQTVLTDDEIEEFLEGFLSELESEPREDDVEAPPPPEPTLPVRKAQAGGKPGARPGVAGEAPPGKAKDKGKKGKKDKGPKATKQPREGSPKPPKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPLAGKKHPIPTPSESPPWPLPPPPSPGLEELPQEGEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPSRRRPERLWPERPEEKAEPPRRGFEAPEEKIEPPLKPLPPPLPDYGDGYVIPDYGDLDYYFQPPRPRKPDTGLETDEEKEELKKPKKEGGSRKEEDTDDKWAVDKGKDHKGPRKGEELEEEWAPVEKVKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQAGATEDDYFDGAWCAEDDSQTQWIEVDTRRTTKFTGVITQGRDSSIHDDFVTSFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCPVSSVHSYYAQNEVVTTDDLDFRHHSYKDMRQLMKVVNEQCPTITRTYSLGKSSRGLKIYAMEISDNPGDHELGEPEFRYTAGIHGNEVLGRELLLLLMQYLCREYRDGNPRVRSLVHDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIYEDFPDLNSVLWGAEERKWVPFRVPNNNLPIPERYLSPDATVSTEVRAIIAWMEKNPFVLGANLNGGERLVSYPYDMARTPSQEQLLAAAMAAARGEDEEEVSEAQETPDHAIFRWLAISFASTHLTMTEPYRGGCQAQDYTGGMGIVNGAKWKPRSGTINDFSYLHTNCLELSIYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTPSSKTCNVDYDIGATQCNFILARSNWKRIREIMAMNGNRPIPHIDPSRPMTPQQRRMQHRRLQYRLRMREQMRLRRLNATASLATTPTSPPTTPTLLPMPTLAPSPAPSSTLGPWHVVPETTAAWEESETETYTEVVTEFGTELGPEEEEEEEEGETATGSEFPFTTVETYTVNFGDF", "length": 1120, "header": "tr|A0A286ZZM9-1|F1SSF7_PIG Computationally mapped isoform of Adipocyte enhancer-binding protein 1 OS=Sus scrofa OX=9823 GN=AEBP1 PE=1 SV=1 CANONICAL=F1SSF7-1" }, "locus": { "chromosome": "18", "start_pos": 51056336, "end_pos": 51047162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062840.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062840.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037156.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037156.1" } ] } }, { "isoform_ac": "A0A287BAM1-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF7/entry#A0A287BAM1-1", "sequence": { "sequence": "MVPACLGSFAAGPPRRKSLQSLGSPGSHPGLWPQKCPQGAEGQSSAGPLGMSSSGGQRAQVSWRLCSRRPGHKPTCFWRLHCRRPQACILECFPPEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPSRRRPERLWPERPEEKAEPPRRGFEAPEEKIEPPLKPLPPPLPDYGDGYVIPDYGDLDYYFQPPRPRKPDTGLETDEEKEELKKPKKEGGSRKEEDTDDKWAVDKGKDHKGPRKGEELEEEWAPVEKVKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQAGATEDDYFDGAWCAEDDSQTQWIEVDTRRTTKFTGVITQGRDSSIHDDFVTSFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCPVSSVHSYYAQNEVVTTDDLDFRHHSYKDMRQLMKVVNEQCPTITRTYSLGKSSRGLKIYAMEISDNPGDHELGEPEFRYTAGIHGNEVLGRELLLLLMQYLCREYRDGNPRVRSLVHDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIYEDFPDLNSVLWGAEERKWVPFRVPNNNLPIPERYLSPDATVSTEVRAIIAWMEKNPFVLGANLNGGERLVSYPYDMARTPSQEQLLAAAMAAARGEDEEEVSEAQETPDHAIFRWLAISFASTHLTMTEPYRGGCQAQDYTGGMGIVNGAKWKPRSGTINDFSYLHTNCLELSIYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTPSSKTCNVDYDIGATQCNFILARSNWKRIREIMAMNGNRPIPHIDPSRPMTPQQRRMQHRRLQYRLRMREQMRLRRLNATASLATTPTSPPTTPTLLPMPTLAPSPAPSSTLGPWHVVPETTAAWEESETETYTEVVTEFGTELGPEEEEEEEEGETATGSEFPFTTVETYTVNFGDF", "length": 1017, "header": "tr|A0A287BAM1-1|F1SSF7_PIG Computationally mapped isoform of Adipocyte enhancer-binding protein 1 OS=Sus scrofa OX=9823 GN=AEBP1 PE=1 SV=1 CANONICAL=F1SSF7-1" }, "locus": { "chromosome": "18", "start_pos": 51053854, "end_pos": 51047162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045049.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045049.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053596.2", "url": "https://www.ensembl.org/id/ENSSSCP00000053596.2" } ] } }, { "isoform_ac": "A0A8W4FNT7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF7/entry#A0A8W4FNT7-1", "sequence": { "sequence": "MVPACLGSFAAGPPRRKSLQSLGSPGSHPGLWPQKCPQGAEGQSSAGPLGMSSSGGQRAQVSWRLCSRRPGHKPTCFWRHHPPWPAGILECFPPEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPSRRRPERLWPERPEEKAEPPRRGFEAPEEKIEPPLKPLPPPLPDYGDGYVIPDYGDLDYYFQPPRPRKPDTGLETDEEKEELKKPKKEGGSRKEEDTDDKWAVDKGKDHKGPRKGEELEEEWAPVEKVKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQAGATEDDYFDGAWCAEDDSQTQWIEVDTRRTTKFTGVITQGRDSSIHDDFVTSFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCPVSSVHSYYAQNEVVTTDDLDFRHHSYKDMRQLMKVVNEQCPTITRTYSLGKSSRGLKIYAMEISDNPGDHELGEPEFRYTAGIHGNEVLGRELLLLLMQYLCREYRDGNPRVRSLVHDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIYEDFPDLNSVLWGAEERKWVPFRVPNNNLPIPERYLSPDATVSTEVRAIIAWMEKNPFVLGANLNGGERLVSYPYDMARTPSQEQLLAAAMAAARGEDEEEVSEAQETPDHAIFRWLAISFASTHLTMTEPYRGGCQAQDYTGGMGIVNGAKWKPRSGTINDFSYLHTNCLELSIYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTPSSKTCNVDYDIGATQCNFILARSNWKRIREIMAMNGNRPIPHIDPSRPMTPQQRRMQHRRLQYRLRMREQMRLRRLNATASLATTPTSPPTTPTLLPMPTLAPSPAPSSTLGPWHVVPETTAAWEESETETYTEVVTEFGTELGPEEEEEEEEGETATGSEFPFTTVETYTVNFGDF", "length": 1016, "header": "tr|A0A8W4FNT7-1|F1SSF7_PIG Computationally mapped isoform of Adipocyte enhancer-binding protein 1 OS=Sus scrofa OX=9823 GN=AEBP1 PE=1 SV=1 CANONICAL=F1SSF7-1" }, "locus": { "chromosome": "18", "start_pos": 51053854, "end_pos": 51047162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096585.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096585.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080581.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080581.1" } ] } }, { "isoform_ac": "A0A8W4FP15-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF7/entry#A0A8W4FP15-1", "sequence": { "sequence": "MVPACLGSFAAGPPRRKSLQSLGSPGSHPGLWPQKCPQGAEGQSSAGPLGMSSSGGQRAQVSWRLCSRRPGHKPTCFWLSILECFPPEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPSRRRPERLWPERPEEKAEPPRRGFEAPEEKIEPPLKPLPPPLPDYGDGYVIPDYGDLDYYFQPPRPRKPDTGLETDEEKEELKKPKKEGGSRKEEDTDDKWAVDKGKDHKGPRKGEELEEEWAPVEKVKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQAGATEDDYFDGAWCAEDDSQTQWIEVDTRRTTKFTGVITQGRDSSIHDDFVTSFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCPVSSVHSYYAQNEVVTTDDLDFRHHSYKDMRQLMKVVNEQCPTITRTYSLGKSSRGLKIYAMEISDNPGDHELGEPEFRYTAGIHGNEVLGRELLLLLMQYLCREYRDGNPRVRSLVHDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIYEDFPDLNSVLWGAEERKWVPFRVPNNNLPIPERYLSPDATVSTEVRAIIAWMEKNPFVLGANLNGGERLVSYPYDMARTPSQEQLLAAAMAAARGEDEEEVSEAQETPDHAIFRWLAISFASTHLTMTEPYRGGCQAQDYTGGMGIVNGAKWKPRSGTINDFSYLHTNCLELSIYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTPSSKTCNVDYDIGATQCNFILARSNWKRIREIMAMNGNRPIPHIDPSRPMTPQQRRMQHRRLQYRLRMREQMRLRRLNATASLATTPTSPPTTPTLLPMPTLAPSPAPSSTLGPWHVVPETTAAWEESETETYTEVVTEFGTELGPEEEEEEEEGETATGSEFPFTTVETYTVNFGDF", "length": 1009, "header": "tr|A0A8W4FP15-1|F1SSF7_PIG Computationally mapped isoform of Adipocyte enhancer-binding protein 1 OS=Sus scrofa OX=9823 GN=AEBP1 PE=1 SV=1 CANONICAL=F1SSF7-1" }, "locus": { "chromosome": "18", "start_pos": 51053854, "end_pos": 51047162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104799.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104799.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081232.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081232.1" } ] } }, { "isoform_ac": "F1SSF7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF7/entry#F1SSF7-1", "sequence": { "sequence": "MAAVRGAPLLGCLLALLALCPGGRPQTVLTDDEIEEFLEGFLSELESEPREDDVEAPPPPEPTLPVRKAQAGGKPGARPGVAGEAPPGKAKDKGKKGKKDKGPKATKQPREGSPKPPKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPLAGKKHPIPTPSESPPWPLPPPPSPGLEELPQEGGGAPPNPWEGLGEDDGEHKPEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPSRRRPERLWPERPEEKAEPPRRGFEAPEEKIEPPLKPLPPPLPDYGDGYVIPDYGDLDYYFQPPRPRKPDTGLETDEEKEELKKPKKEGGSRKEEDTDDKWAVDKGKDHKGPRKGEELEEEWAPVEKVKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQAGATEDDYFDGAWCAEDDSQTQWIEVDTRRTTKFTGVITQGRDSSIHDDFVTSFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCPVSSVHSYYAQNEVVTTDDLDFRHHSYKDMRQLMKVVNEQCPTITRTYSLGKSSRGLKIYAMEISDNPGDHELGEPEFRYTAGIHGNEVLGRELLLLLMQYLCREYRDGNPRVRSLVHDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIYEDFPDLNSVLWGAEERKWVPFRVPNNNLPIPERYLSPDATVSTEVRAIIAWMEKNPFVLGANLNGGERLVSYPYDMARTPSQEQLLAAAMAAARGEDEEEVSEAQETPDHAIFRWLAISFASTHLTMTEPYRGGCQAQDYTGGMGIVNGAKWKPRSGTINDFSYLHTNCLELSIYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTPSSKTCNVDYDIGATQCNFILARSNWKRIREIMAMNGNRPIPHIDPSRPMTPQQRRMQHRRLQYRLRMREQMRLRRLNATASLATTPTSPPTTPTLLPMPTLAPSPAPSSTLGPWHVVPETTAAWEESETETYTEVVTEFGTELGPEEEEEEEEGETATGSEFPFTTVETYTVNFGDF", "length": 1140, "header": "tr|F1SSF7-1|F1SSF7_PIG Isoform 1 of Adipocyte enhancer-binding protein 1 OS=Sus scrofa OX=9823 GN=AEBP1 PE=1 SV=1 CANONICAL=F1SSF7-1" }, "locus": { "chromosome": "18", "start_pos": 51056336, "end_pos": 51047162, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018236.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018236.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017744.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017744.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 174, "start_aa": "Thr", "end_pos": 174, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr174", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZZM9", "url": "https://www.uniprot.org/uniprotkb/A0A286ZZM9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:733628", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:733628", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2RUV9-1", "protein_name": "Adipocyte enhancer-binding protein 1", "gene_name": "Aebp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAVRTASLLCGLLALLALCPEGSPQTVLTDDEIQEFLEGFLSEFETQSPPREDDVEAQPLPEPTQRARKSKAGGKPRADAEAPPEKNKDKEKKGKKDKGPKAAKHLEGSTRPTKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKRPSAGKRFSTVAPLETPERSLTSPSNPGTRELPEERGRTSLNTWQGQGEETQVEARQHRPEPEEETEMPTLDYNDQIEREDYEDFEYIRRQKQPRPTPSRKRIWPEPPEEKTQEPEERKEVDPPLKPLLPPDYGDGYLIPNYDDLDYYFPHPPPQKPDVGQEVDEEKEELKKPKKEGSSPKEDTEDKWAAEKNKDHKAGPRKGEELEEEWGPVEKIKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQAGANEDDYYDGAWCAEDESQTQWIEVDTRRTTRFTGVITQGRDSSIHDDFVTTFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCPVTPVYSYYAQNEVVTTDSLDFRHHSYKDMRQLMKVVNEECPTITRTYSLGKSSRGLKIYAMEISDNPGEHELGEPEFRYTAGMHGNEVLGRELLLLLMQYLCHEYRDGNPRVRNLVQDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIFEDFPDLNSVLWAAEEKKWVPYRVPNNNLPIPERYLSPDATVSTEVRAIISWMEKNPFVLGANLNGGERLVSYPYDMARTPSQEQLLAAALAAARGEDEDEVSEAQETPDHAIFRWLAISFASAHLTMTEPYRGGCQAQDYTSGMGIVNGAKWNPRSGTFNDFSYLHTNCLELSIYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTSSAKICNVDYDIGATQCNFILARSNWKRIREILAMNGNRPILRVDPSRPMTPQQRRLQQRRLRYRLRMREQMRLRRLNSTTGPATSPTPALTLPPSPTPGSTSRLWEILPTTAAGWEESETETYTEVVTEFETEYGPDLEVEELEEEEEEEEEMDTGLTFPVTTVETYTVNFGDF", "length": 1128 }, "evidence": [ { "id": "F1SSF7", "url": "https://omabrowser.org/oma/group/F1SSF7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E7F829-1", "protein_name": "Adipocyte enhancer-binding protein 1", "gene_name": "aebp1a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRVLVCAALFALCWILTFAINEELANAPNQRTRSIQMRQSNGVKSNRDDLQEGFSEDTQMDEPGEEMAEKEKPKGKKTPEEILAAKAKKAAEKEAKAKKPKPTKKPKPTKKPKPPKATKKSKPPKATKKPKAAKPTTPARETKPTKKPTMEEEEEKLLLELGWDTLSPKETEMEKPIGPDHDMHSKKDPTTPPSVKEHMPDNWDSRHEIQEPDLIPKVKQPSSTDDPSIYLPIPEEATTTPRTIAPWYEEYDYADLAAKKQEEELEKARKAKEEKAEKLRKMWEEEEEEKRKQTALHAEPKKCPPLGLESHRVEDDQILASSSSNLGYSALRGRLNMQNSADEEDVYGGAWCADTEEKEHWFQVDGRREVEFTGVITQGRNSESNNDFVSSFFVAFSNDSREWTVLHDGYAEWLFYGNVDKDTPVMTEFSYPVVARYIRVLPQSWNGSLCMRLEVLGCQLPTSYATENDVPPTDDLDYRHHNYKEMRQMMKVINEECPNITRIYNIGKSFQGLKMYAMEISDNPGEHEPGEPEFRYTAGLHGNEVLGRELLLLLMQFICKEYNDDNPRVHRLVETVRIHLVPSLNPDAYELAYEMGSEMGNWALGHWTEEGYDIFQNFPDLNSVLWGAEDRGWVPRIVPNHHIPIPENFLNGSVATETKAIISWMERTPFVLGANLQGGEKLVAYPFDMQRPPRATSTDGRVGQPVQEYHNMNEETWARIQRQNEGALRETADENLFRWLATTYAHSHLTLTENHRGSCHTDDITGGQGIINRASWKPVVGSMNDFSYLHTNCFEISIFLGCDKFPHESELPSEWENNREALLAFIEQVHRGIKGVVRDVDGNLLANATVSVEGIKHDVKTASTGDYWRLLNPGEYRVTARADGYSSQTRLCIVGYDANATPCSFTLTKSNWARIQQILAQSGKRPRLVNNIPRNANNQVNGGSTGPAGGSQNERLNRIRLMRMRKLRMERMKSSTTTEMTTSTTTTTPEPTTTTTLGSTSESWYDWFEQESFNFEHTIDED", "length": 1022 }, "evidence": [ { "id": "F1SSF7", "url": "https://omabrowser.org/oma/group/F1SSF7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1N1C7-1", "protein_name": "Adipocyte enhancer-binding protein 1", "gene_name": "AEBP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALLGAPLLGCLLVLLALCPGGRPQTVLTDDEIEEFLEGFLSELESEPREDDVEAPPPPEPTLPARKPQTGGKPGARPGVAEEVPPGKAKDKGKKGKKDKSPKATKQPPEGSSRPPKKPKEKPPKEKPPKATKKPKEKPPKATKKPKEKQPKEKPPKEKPPKEKPPKATKKPKEKPPKATKRPLAGKKLSIPTPSESPQWPLPPLLSPDHEELPQEGGGPLPDPWGGPGEETDVEHQPEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPSRRRPERPWPERPEEKAEPPGRGFEAPEEKIEPPPLKPLPPPLLPDYEDGYVIPNYDDMDYYFRPPKPQKPDTGLETDEEKEELKKPKKEGSSPKEEETDDKWTVEKGKDPKGPRKGEESEEEWAPVEKIKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQAGDTEDDYYDGAWCAEDDSQTQWIEVDTRRTTKFTGVITQGRDSSIHDDFVTSFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCPVSPVHSYYAQNEVVTTDDLDFRHHNYKDMRQLMKVVNEQCPTITRTYSLGKSSRGLKIYAMEISDNPGDHELGEPEFRYTAGIHGNEVLGRELLLLLMQYLCREYRDGNPRVRSLVQDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIYEDFPDLNSVLWGAEERKWVPYRVPNNNLPIPERYLSPDATVSTEVRAIIAWMEKNPFVLGANLNGGERLVSYPYDMARTPSQEQLLAAAMAAARGEDEEEVSEAQETPDHAIFRWLAISFASTHLTMTEPYRGGCQAQDYTGGMGIVNGAKWKPRSGTINDFSYLHTNCLELSIFLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTPSSKTCNVDYDIGATQCNFILARSNWKRIREIMAMNGNRPIPRIDPSRPMTPQQRRMQRRRLQYRLRMREQMRLRRLNATTSPATTPTSPPPTPTLLPTADLAPSPAPSSTLGPWQFLPETTVNWEESETETETETETYTEVVTEFGTELGPEEEEGEEGEGEMVTGPDFPFTTVETYTVNFGDF", "length": 1170 }, "evidence": [ { "id": "F1SSF7", "url": "https://omabrowser.org/oma/group/F1SSF7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q640N1-1", "protein_name": "Adipocyte enhancer-binding protein 1", "gene_name": "Aebp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPVRTASLLCGLLALLTLCPEGNPQTVLTDDEIEEFLEGFLSELETQSPPREDDVEVQPLPEPTQRPRKSKAGGKQRADVEVPPEKNKDKEKKGKKDKGPKATKPLEGSTRPTKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKRPSAGKKFSTVAPLETLDRLLPSPSNPSAQELPQKRDTPFPNAWQGQGEETQVEAKQPRPEPEEETEMPTLDYNDQIEKEDYEDFEYIRRQKQPRPTPSRRRLWPERPEEKTEEPEERKEVEPPLKPLLPPDYGDSYVIPNYDDLDYYFPHPPPQKPDVGQEVDEEKEEMKKPKKEGSSPKEDTEDKWTVEKNKDHKGPRKGEELEEEWAPVEKIKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQAGANEDDYYDGAWCAEDESQTQWIEVDTRRTTRFTGVITQGRDSSIHDDFVTTFFVGFSNDSQTWVMYTNGYEEMTFYGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCPVTPVYSYYAQNEVVTTDSLDFRHHSYKDMRQLMKAVNEECPTITRTYSLGKSSRGLKIYAMEISDNPGDHELGEPEFRYTAGIHGNEVLGRELLLLLMQYLCQEYRDGNPRVRNLVQDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIFEDFPDLNSVLWAAEEKKWVPYRVPNNNLPIPERYLSPDATVSTEVRAIISWMEKNPFVLGANLNGGERLVSYPYDMARTPSQEQLLAEALAAARGEDDDGVSEAQETPDHAIFRWLAISFASAHLTMTEPYRGGCQAQDYTSGMGIVNGAKWNPRSGTFNDFSYLHTNCLELSVYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTSSAKICNVDYDIGATQCNFILARSNWKRIREILAMNGNRPILRVDPSRPMTPQQRRMQQRRLQYRLRMREQMRLRRLNSTAGPATSPTPALMPPPSPTPAITLRPWEVLPTTTAGWEESETETYTEVVTEFETEYGTDLEVEEIEEEEEEEEEEMDTGLTFPLTTVETYTVNFGDF", "length": 1128 }, "evidence": [ { "id": "F1SSF7", "url": "https://omabrowser.org/oma/group/F1SSF7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IUX7-1", "protein_name": "Adipocyte enhancer-binding protein 1", "gene_name": "AEBP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVRGAPLLSCLLALLALCPGGRPQTVLTDDEIEEFLEGFLSELEPEPREDDVEAPPPPEPTPRVRKAQAGGKPGKRPGTAAEVPPEKTKDKGKKGKKDKGPKVPKESLEGSPRPPKKGKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPKEKPPKATKKPPSGKRPPILAPSETLEWPLPPPPSPGPEELPQEGGAPLSNNWQNPGEETHVEAREHQPEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPSRRRRPERVWPEPPEEKAPAPAPEERIEPPVKPLLPPLPPDYGDGYVIPNYDDMDYYFGPPPPQKPDAERQTDEEKEELKKPKKEDSSPKEETDKWAVEKGKDHKEPRKGEELEEEWTPTEKVKCPPIGMESHRIEDNQIRASSMLRHGLGAQRGRLNMQTGATEDDYYDGAWCAEDDARTQWIEVDTRRTTRFTGVITQGRDSSIHDDFVTTFFVGFSNDSQTWVMYTNGYEEMTFHGNVDKDTPVLSELPEPVVARFIRIYPLTWNGSLCMRLEVLGCSVAPVYSYYAQNEVVATDDLDFRHHSYKDMRQLMKVVNEECPTITRTYSLGKSSRGLKIYAMEISDNPGEHELGEPEFRYTAGIHGNEVLGRELLLLLMQYLCREYRDGNPRVRSLVQDTRIHLVPSLNPDGYEVAAQMGSEFGNWALGLWTEEGFDIFEDFPDLNSVLWGAEERKWVPYRVPNNNLPIPERYLSPDATVSTEVRAIIAWMEKNPFVLGANLNGGERLVSYPYDMARTPTQEQLLAAAMAAARGEDEDEVSEAQETPDHAIFRWLAISFASAHLTLTEPYRGGCQAQDYTGGMGIVNGAKWNPRTGTINDFSYLHTNCLELSFYLGCDKFPHESELPREWENNKEALLTFMEQVHRGIKGVVTDEQGIPIANATISVSGINHGVKTASGGDYWRILNPGEYRVTAHAEGYTPSAKTCNVDYDIGATQCNFILARSNWKRIREIMAMNGNRPIPHIDPSRPMTPQQRRLQQRRLQHRLRLRAQMRLRRLNATTTLGPHTVPPTLPPAPATTLSTTIEPWGLIPPTTAGWEESETETYTEVVTEFGTEVEPEFGTKVEPEFETQLEPEFETQLEPEFEEEEEEEKEEEIATGQAFPFTTVETYTVNFGDF", "length": 1158 }, "evidence": [ { "id": "F1SSF7", "url": "https://omabrowser.org/oma/group/F1SSF7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" }, { "name": "metallocarboxypeptidase activity", "id": "GO:0004181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004181", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" }, { "name": "carboxypeptidase activity", "id": "GO:0004180", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004180", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" }, { "name": "collagen binding", "id": "GO:0005518", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005518", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" }, { "name": "regulation of collagen fibril organization", "id": "GO:1904026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904026", "evidence": [ { "database": "UniProtKB", "id": "F1SSF7", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1040, "end_pos": 1042, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 529, "end_pos": 531, "annotation": "n_glycosylation_sequon" }, { "start_pos": 923, "end_pos": 925, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" }, { "id": "PS50022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50022" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F5/8 type C", "eco_id": "ECO_0000259", "start_pos": 384, "end_pos": 541, "start_aa": "Val", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF7" }, { "id": "PS52035", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52035" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M14", "eco_id": "ECO_0000259", "start_pos": 564, "end_pos": 905, "start_aa": "Arg", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 174 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1040, "end_pos": 1042 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 529, "end_pos": 531 }, { "start_pos": 923, "end_pos": 925 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STT6-1", "uniprot_ac": "F1STT6", "uniprot_id": "F1STT6_PIG", "mass": { "chemical_mass": 32055.0, "monoisotopic_mass": 32055.0 }, "refseq": {}, "gene_names": [ { "name": "MTFR1L", "type": "recommended", "evidence": [ { "id": "F1STT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STT6" } ] } ], "protein_names": [ { "name": "Mitochondrial fission regulator", "type": "recommended", "evidence": [ { "id": "F1STT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STT6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Mitochondrial protein required for adaptation of miochondrial dynamics to metabolic changes. Regulates mitochondrial morphology at steady state and mediates AMPK-dependent stress-induced mitochondrial fragmentation via the control of OPA1 levels.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1U6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1U6#function" }, { "database": "UniProtKB", "id": "ARBA00044937", "url": "https://www.uniprot.org/uniprotkb/ARBA00044937#function" }, { "database": "UniProtKB", "id": "F1STT6", "url": "https://www.uniprot.org/uniprotkb/F1STT6#function" } ] }, { "annotation": "Plays a role in mitochondrial aerobic respiration. Regulates mitochondrial organization and fission.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1U6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1U6#function" }, { "database": "UniProtKB", "id": "RU369053", "url": "https://www.uniprot.org/uniprotkb/RU369053#function" }, { "database": "UniProtKB", "id": "F1STT6", "url": "https://www.uniprot.org/uniprotkb/F1STT6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STT6", "url": "https://www.uniprot.org/uniprotkb/F1STT6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTFR1L", "url": "https://www.uniprot.org/uniprotkb/F1STT6", "locus": { "chromosome": "6", "start_pos": 83280250, "end_pos": 83265420, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003553", "url": "https://www.ensembl.org/id/ENSSSCG00000003553" } ] } } ], "crossref": [ { "id": "F1STT6", "url": "https://alphafold.ebi.ac.uk/entry/F1STT6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003553", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003553", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LRHKWKP", "url": "https://omabrowser.org/oma/group/LRHKWKP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14215", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14215", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14215:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14215:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05308", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05308", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A1U6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1U6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1U6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STT6", "url": "https://www.uniprot.org/uniprotkb/F1STT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STT6-1", "url": "https://www.uniprot.org/uniprotkb/F1STT6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TSGMEANVTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNLSDLCLRDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLMVIQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEYKATCSSSEEDDCVSLSKASSFADMMGILKDFHRMKQSQDLNRSLLKEEDPAILISEVLRRKFALKEEDMSRKGN", "length": 292, "header": "tr|F1STT6-1|F1STT6_PIG Isoform 1 of Mitochondrial fission regulator OS=Sus scrofa OX=9823 GN=MTFR1L PE=1 SV=3 CANONICAL=F1STT6-1" }, "isoforms": [ { "isoform_ac": "A0A287A1U6-1", "url": "https://www.uniprot.org/uniprotkb/F1STT6/entry#A0A287A1U6-1", "sequence": { "sequence": "TSGMEANVTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNLSDLCLRDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLMVIQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAVTSPRRPRRSLSFHQSPCFVLPALNVANQNTKLPAVRLKRMTASLCPRPAALQI", "length": 204, "header": "tr|A0A287A1U6-1|F1STT6_PIG Computationally mapped isoform of Mitochondrial fission regulator OS=Sus scrofa OX=9823 GN=MTFR1L PE=1 SV=2 CANONICAL=F1STT6-1" }, "locus": { "chromosome": "6", "start_pos": 83273472, "end_pos": 83268467, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039490.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039490.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037728.2", "url": "https://www.ensembl.org/id/ENSSSCP00000037728.2" } ] } }, { "isoform_ac": "F1STT6-1", "url": "https://www.uniprot.org/uniprotkb/F1STT6/entry#F1STT6-1", "sequence": { "sequence": "TSGMEANVTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNLSDLCLRDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLMVIQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEYKATCSSSEEDDCVSLSKASSFADMMGILKDFHRMKQSQDLNRSLLKEEDPAILISEVLRRKFALKEEDMSRKGN", "length": 292, "header": "tr|F1STT6-1|F1STT6_PIG Isoform 1 of Mitochondrial fission regulator OS=Sus scrofa OX=9823 GN=MTFR1L PE=1 SV=3 CANONICAL=F1STT6-1" }, "locus": { "chromosome": "6", "start_pos": 83275652, "end_pos": 83268467, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003947.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003947.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003856.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003856.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1U6", "url": "https://www.uniprot.org/uniprotkb/A0A287A1U6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3I6A4-1", "protein_name": "Mitochondrial fission regulator", "gene_name": "Mtfr1l", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEANVTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNISDLCLRDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAASTSLTPDFLSPGSSNVSSPLPCFGSSLHSTTSFVISDITEETEVEVPELPTIPLLCSASPECCKPEHKATCSSSEEDDCISLSKASSFADMMGILKDFHRIKQSQDLSRSLLKEEDPAVLISEVLRRKFALKEEDISRKGN", "length": 289 }, "evidence": [ { "id": "F1STT6", "url": "https://omabrowser.org/oma/group/F1STT6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3ZBW7-1", "protein_name": "Mitochondrial fission regulator 1-like", "gene_name": "MTFR1L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEANVTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNISDLCLRDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEIEVPELPSVPLLCSASPECCKPEHKATCSSSEEDDCVSLSKASSFADMMGILKDFHRMKQSQDLSRSSLKEEDPAVLISEVLRRKFALKEEDISRKGN", "length": 289 }, "evidence": [ { "id": "F1STT6", "url": "https://omabrowser.org/oma/group/F1STT6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5XII9-1", "protein_name": "Mitochondrial fission regulator 1-like", "gene_name": "Mtfr1l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEANVTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNISDLCLKDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFLSSGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPTIPLLCSASPECCKSEHKTTCSSSEEDDCISLSKASSFADMMGILKDFHRIKQSQDLSRSLLKEEDPAVLISEVLRRKFALKEEDISRKGN", "length": 289 }, "evidence": [ { "id": "F1STT6", "url": "https://omabrowser.org/oma/group/F1STT6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7T3E8-1", "protein_name": "Mitochondrial fission regulator 1-like", "gene_name": "mtfr1l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "METEAEVIPIWQNKPHGSTRSVVRRIGSTLPLKPCPRACFQELPGLPSMRSLDGPLVPTLADIAWIADDEEETYARVRSDTRPLRHEWRPTPLLVMHRNSSVPNFRREGRRVEGLRKPGVTALNRTTALQDELSRLRAQIAKIVAADSDSNPITPDLLSPDDTSMGFSMAPFETAAYQPPPTASFVISDVTEEDEEEEEEEDREEEEEDVSELVPDPMPPVSMTASATFDLDRPTMDFREPEEDTVSLSKSTSFADVMDMLKDMNRLKMSKDRYNRGCTSLREEDSASLISEALRKKFVLKDDDISMRK", "length": 309 }, "evidence": [ { "id": "F1STT6", "url": "https://omabrowser.org/oma/group/F1STT6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9CWE0-1", "protein_name": "Mitochondrial fission regulator 1-like", "gene_name": "Mtfr1l", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEANVTIPIWQNKPHGAARSVVRRIGTNLPLKPCPRASFETLPNISDLCLKDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFFSSGSSNVSSPLPCFGSSLHSTTSFVISDITEETEVEVPELPTVPLLCSASPECCKPEHKTTCSSSEEDDCISLSKASSFADMMGILKDFHRIKQSQDLSRSLLKEEDPAVLISEVLRRKFALKEEDISRKGN", "length": 289 }, "evidence": [ { "id": "F1STT6", "url": "https://omabrowser.org/oma/group/F1STT6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H019-1", "protein_name": "Mitochondrial fission regulator 1-like", "gene_name": "MTFR1L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGMEATVTIPIWQNKPHGAARSVVRRIGTNLPLKPCARASFETLPNISDLCLRDVPPVPTLADIAWIAADEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRSQIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSASPECCKPEHKAACSSSEEDDCVSLSKASSFADMMGILKDFHRMKQSQDLNRSLLKEEDPAVLISEVLRRKFALKEEDISRKGN", "length": 292 }, "evidence": [ { "id": "F1STT6", "url": "https://omabrowser.org/oma/group/F1STT6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "F1STT6", "url": "https://www.uniprot.org/uniprotkb/F1STT6" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1STT6", "url": "https://www.uniprot.org/uniprotkb/F1STT6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial fission", "id": "GO:0000266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000266", "evidence": [ { "database": "UniProtKB", "id": "F1STT6", "url": "https://www.uniprot.org/uniprotkb/F1STT6" } ], "pmid": "" }, { "name": "aerobic respiration", "id": "GO:0009060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009060", "evidence": [ { "database": "UniProtKB", "id": "F1STT6", "url": "https://www.uniprot.org/uniprotkb/F1STT6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STT6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 292, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STT6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STT6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 166, "end_pos": 168 }, { "start_pos": 259, "end_pos": 261 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUZ6-1", "uniprot_ac": "F1SUZ6", "uniprot_id": "F1SUZ6_PIG", "mass": { "chemical_mass": 71257.0, "monoisotopic_mass": 71257.0 }, "refseq": { "ac": "XP_020957755", "name": "alpha-1,2-mannosyltransferase ALG9 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957755" }, "gene_names": [ { "name": "ALG9", "type": "recommended", "evidence": [ { "id": "F1SUZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6" } ] }, { "name": "ALG9", "type": "synonym", "evidence": [ { "id": "XP_020957755", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957755" } ] } ], "protein_names": [ { "name": "Mannosyltransferase", "type": "recommended", "evidence": [ { "id": "F1SUZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.-", "type": "synonym", "evidence": [ { "id": "F1SUZ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6/entry#names_and_taxonomy" } ] }, { "name": "alpha-1,2-mannosyltransferase ALG9 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020957755", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957755" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUZ6", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ALG9", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6", "locus": { "chromosome": "9", "start_pos": 39527883, "end_pos": 39619892, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015023", "url": "https://www.ensembl.org/id/ENSSSCG00000015023" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015023", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015023", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519965", "url": "https://www.ncbi.nlm.nih.gov/gene/100519965", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22760", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22760", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22760:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22760:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03901", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03901", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-446193", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446193", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020957755", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957755", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A3F4", "url": "https://www.uniprot.org/uniprotkb/A0A287A3F4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A3F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A3F4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QDU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QDU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAN8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUZ6", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRGARQRLKGSGGSGGDPASAADKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGSTAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEPWHFYLINGFLNFNVVFALALLVLPLTSLMEHLLQRFHVQNLGHPYWLTLAPMYIWFIIFFIQPHKEERFLFPVYPLICLCGAVALSALQKCYHFVFQRYRLEHYTVTSNWLALGTLFLFGLLSFSRSVALFRGYHGPLDLYPEFYRIATDPAIHTVPEGRPVNVCVGKEWHRFPSSFLLPENWQLQFIPSEFRGQLPKPFAEGPLATRIVPTDMNDQNLEEPSRYIDISKCHYLVDLDTMRETPREPKYSSNREEWINLAYRPFLDASRSSKLLRAFYVPFLSDQYTVYANYTILKPRKAKQIRKKSGDRRRTEPAFRKN", "length": 622, "header": "tr|F1SUZ6-1|F1SUZ6_PIG Isoform 1 of Mannosyltransferase OS=Sus scrofa OX=9823 GN=ALG9 PE=1 SV=4 CANONICAL=F1SUZ6-1" }, "isoforms": [ { "isoform_ac": "A0A287A3F4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6/entry#A0A287A3F4-1", "sequence": { "sequence": "MSAFLYTFVSLMFLLRNVTSILLTGFLANITLNPSALYLQTHYLIYGKGFQTWEYSPAYAIRSYAYLLLHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEPWHFYLINGFLNFNVVFALALLVLPLTSLMEHLLQRFHVQNLGHPYWLTLAPMYIWFIIFFIQPHKEERFLFPVYPLICLCGAVALSALQKCYHFVFQRYRLEHYTVTSNWLALGTLFLFGLLSFSRSVALFRGYHGPLDLYPEFYRIATDPAIHTVPEGRPVNVCVGKEWHRFPSSFLLPENWQLQFIPSEFRGQLPKPFAEGPLATRIVPTDMNDQNLEEPSRYIDISKCHYLVDLDTMRETPREPKYSSNREEWINLAYRPFLDASRSSKLLRAFYVPFLSDQYTVYANYTILKPRKAKQIRKKSGDRRRTEPAFRKN", "length": 572, "header": "tr|A0A287A3F4-1|F1SUZ6_PIG Computationally mapped isoform of Mannosyltransferase OS=Sus scrofa OX=9823 GN=ALG9 PE=1 SV=1 CANONICAL=F1SUZ6-1" }, "locus": { "chromosome": "9", "start_pos": 39617724, "end_pos": 39534602, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050617.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050617.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038272.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038272.1" } ] } }, { "isoform_ac": "A0A5G2QDU2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6/entry#A0A5G2QDU2-1", "sequence": { "sequence": "MASRGARQRLKGSGGSGGDPASAADKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGSTAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGPIAFDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEPWHFYLINGFLNFNVVFALALLVLPLTSLMEHLLQRFHVQNLGHPYWLTLAPMYIWFIIFFIQPHKEERFLFPVYPLICLCGAVALSALQYSFLSFKCYHFVFQRYRLEHYTVTSNWLALGTLFLFGLLSFSRSVALFRGYHGPLDLYPEFYRIATDPAIHTVPEGRPVNVCVGKEWHRFPSSFLLPENWQLQFIPSEFRGQLPKPFAEGPLATRIVPTDMNDQNLEEPSRYIDISKCHYLVDLDTMRETPREPKYSSNREEWINLAYRPFLDASRSSKLLRAFYVPFLSDQYTVYANYTILKPRKAKQIRKKSGG", "length": 616, "header": "tr|A0A5G2QDU2-1|F1SUZ6_PIG Computationally mapped isoform of Mannosyltransferase OS=Sus scrofa OX=9823 GN=ALG9 PE=1 SV=1 CANONICAL=F1SUZ6-1" }, "locus": { "chromosome": "9", "start_pos": 39619807, "end_pos": 39534915, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067684.1", "url": "https://www.ensembl.org/id/ENSSSCT00000067684.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062807.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062807.1" } ] } }, { "isoform_ac": "A0A5G2RAN8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6/entry#A0A5G2RAN8-1", "sequence": { "sequence": "MASRGARQRLKGSGGSGGDPASAADKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGSTAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEPWHFYLINGFLNFNVVFALALLVLPLTSLMEHLLQRFHVQNLGHPYWLTLAPMYIWFIIFFIQPHKEERFLFPVYPLICLCGAVALSALQKCYHFVFQRYRLEHYTVTSNWLALGTLFLFGLLSFSRSVALFRGYHGPLDLYPEFYRIATDPAIHTVPEGRPVNVCVGKEWHRFPSSFLLPENWQLQFIPSEFRGQLPKPFAEGPLATRIVPTDMNDQNLEEPSRYIDISKCHYLVDLDTMRETPREPKYSSNREEWINLAYRPFLDASRSSKLLRAFYVPFLSDQYTVYANYTILKPRKAKQIRKKSGGAKSESADMTFGKTGFFQTLLAYSDKDLWLS", "length": 641, "header": "tr|A0A5G2RAN8-1|F1SUZ6_PIG Computationally mapped isoform of Mannosyltransferase OS=Sus scrofa OX=9823 GN=ALG9 PE=1 SV=1 CANONICAL=F1SUZ6-1" }, "locus": { "chromosome": "9", "start_pos": 39619807, "end_pos": 39527904, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066438.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066438.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074395.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074395.1" } ] } }, { "isoform_ac": "F1SUZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6/entry#F1SUZ6-1", "sequence": { "sequence": "MASRGARQRLKGSGGSGGDPASAADKLRELLCSREAGGAEPRPELSGNKAGQVWAPEGSTAFKCLLSARLCAALLSNISDCDETFNYWEPTHYLIYGKGFQTWEYSPAYAIRSYAYLLLHAWPAAFHARILQTNKILVFYFLRCLLAFVSCICELYFYKAVCKKFGLHVSRMMLAFLVLSTGMFCSSSAFLPSSFCMYTTLIAMTGWYMDKTSIAVLGVAAGAILGWPFSAALGLPIAFDLLVMKHRWKSFFRWSLVALMLFLVPVVVIDSYYYGKLVIAPLNIVLYNVFTPHGPDLYGTEPWHFYLINGFLNFNVVFALALLVLPLTSLMEHLLQRFHVQNLGHPYWLTLAPMYIWFIIFFIQPHKEERFLFPVYPLICLCGAVALSALQKCYHFVFQRYRLEHYTVTSNWLALGTLFLFGLLSFSRSVALFRGYHGPLDLYPEFYRIATDPAIHTVPEGRPVNVCVGKEWHRFPSSFLLPENWQLQFIPSEFRGQLPKPFAEGPLATRIVPTDMNDQNLEEPSRYIDISKCHYLVDLDTMRETPREPKYSSNREEWINLAYRPFLDASRSSKLLRAFYVPFLSDQYTVYANYTILKPRKAKQIRKKSGDRRRTEPAFRKN", "length": 622, "header": "tr|F1SUZ6-1|F1SUZ6_PIG Isoform 1 of Mannosyltransferase OS=Sus scrofa OX=9823 GN=ALG9 PE=1 SV=4 CANONICAL=F1SUZ6-1" }, "locus": { "chromosome": "9", "start_pos": 39619807, "end_pos": 39534602, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016387.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016387.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015946.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015946.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A3F4", "url": "https://www.uniprot.org/uniprotkb/A0A287A3F4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-446193", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446193", "resource": "Reactome", "description": "Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ6", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "glycosyltransferase activity", "id": "GO:0016757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016757", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ6", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6" } ], "pmid": "" }, { "name": "dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity", "id": "GO:0052918", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052918", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ6", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6" } ], "pmid": "" }, { "name": "dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity", "id": "GO:0052926", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052926", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ6", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6" } ], "pmid": "" }, { "name": "alpha-1,2-mannosyltransferase activity", "id": "GO:0000026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000026", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ6", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "dolichol-linked oligosaccharide biosynthetic process", "id": "GO:0006488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006488", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ6", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6" } ], "pmid": "" }, { "name": "protein N-linked glycosylation", "id": "GO:0006487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006487", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ6", "url": "https://www.uniprot.org/uniprotkb/F1SUZ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 593, "end_pos": 595, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-446215", "name": "ALG9 transfers Man to N-glycan precursor (GlcNAc)2 (Man)6 (PP-Dol)1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum lumen", "input_participant_list": [], "output_participant_list": [ "R-ALL-449312" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-446215", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446215" } ] }, { "id": "R-SSC-446216", "name": "ALG9 transfers Man to N-glycan precursor (GlcNAc)2 (Man)8 (PP-Dol)1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum lumen", "input_participant_list": [], "output_participant_list": [ "R-ALL-449371" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-446216", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446216" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-449312", "participant_name": "(GlcNAc)2 (Man)7 (PP-Dol)1 [lumenal side of endoplasmic reticulum membrane]", "crossref": [ { "id": "59088", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-449371", "participant_name": "(GlcNAc)2 (Man)9 (PP-Dol)1 [lumenal side of endoplasmic reticulum membrane]", "crossref": [ { "id": "37637", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00588HO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00876GU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G00883ZT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01220PX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01260RY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01359SY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01621RQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01727MH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G01919UV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G01954TO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G02229WQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G02526NN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G02945KQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G03067GR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G03275SD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G03321AC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G03793TZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G04216GB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G04220HB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G04353BC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G04414GO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G04570XN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G04667JP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G04681PT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G04705FR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G04816EV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G04987NY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G05140WY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G05421OW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G05454SP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G06054EC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G06553ZS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G06675AE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G06768XI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G06833NJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G07014AW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G07395FP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G07473GL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G07505DF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G07507AY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G08060JF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G08197NF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G08256MX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G08436QU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G08624PX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G09057LF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G09613ZG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G09671PC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G10040DS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G10108CU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G10169QO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G11041AG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G11414XN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G11834OY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G11885NX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G12422FH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G12518WE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G12749IL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G12775RU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G12977AR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13006TG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13049QY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13305QJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13335AQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13429VD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13542HW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G13746SQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G13869TL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G14343MU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G14439NS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G15001YX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G15158LV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G15403UF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G15638PX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G15827JT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G16404YH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G16417CU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G16482XF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G16578NV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G16879YK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G17595XL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G17639DA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G17863YV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G17988XO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G18516QW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G18548RP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G18609UY", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G18948TG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G19125UE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G19242QH", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G19592AH", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G19763QB", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G19958IL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20034RK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20078BU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G20174ZL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20212GT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20248TO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G20643DZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21109OS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G21359LU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G21974TQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22122FL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G22467XI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22477EB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G22945AJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23176IZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23239HX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23342BO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G23897ET", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G23949TZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24275AM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24325KO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24371AE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24528UH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24620AI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24752UA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24758NZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G24791UN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G24797UH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G24968XB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25095HH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25164XM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25391SS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G25463XU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25574DU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25827FI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G25942LR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G26081RR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G26474XX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G27025JP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G27241WX", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G27488AQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G28478RU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G28558PZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G28713SC", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G29056SI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G29288DT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G29366IW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G29402GQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G29441UP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G29803MG", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G30084YQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G30140II", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G30505TQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G30514JJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G30517YN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31031DV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31220IW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G31429YW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31504TD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31773TP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G31922FD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32190EA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32266OH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G32871YT", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G32880EZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G32883QH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33030OB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33066WV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33195LE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33275DG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33303XH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33451YI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G33783GO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34028QA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G34228HT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34499SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34569IX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G34769XS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35050EV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35053YZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35175QJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35442CG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35527UZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35674SO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35769UV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35774GX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35794UW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G35802OQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G35841YO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G36128UC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G36159AI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G36258ZR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G36437LH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G36721QZ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37052HG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G37135JQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G37212VZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G37581LU", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37612TM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G37855JI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G37919OJ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37944VQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G37999UP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38029ML", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38824JE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G38901YC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G38936AZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39046AL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39111QK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39119ZF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39174FS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39298CN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G39407WQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39578OU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G39687WG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G39976KS", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G40044ME", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G40096SL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G40244KN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40271HI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40537VT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40690AW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G40702WU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40744ZM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G40821RK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41291OR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G41771ES", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G41940YX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42133QN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42299NR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42439GB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G42674LI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42772CJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G42779TD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43230HK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43475FH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G43636RG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G44084PP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44210FS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G44962ZM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G45284EU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G45711LB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G46243SS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G46559US", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G46700WH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G46851JU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G47006SF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G47206TB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47440YH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G47910EX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G48032KI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G48148JS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G48350AZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G48369JO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G48442VP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G48630BP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49383JW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49401NP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G49769PU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G49961MS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50119EM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50139IU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50273OO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50507PS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50609NM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G50782HI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G51119RL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51229VG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51370GD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G51419BH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51657FI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G51987NK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52210JX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52461YB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52866KC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52882GL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G52916IV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G53466CV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G54262EN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G54370BN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G54587SM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G54626GN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G54642SQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G54715UD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G54945DX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G55086SI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G55146FI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G55782QX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G55786MG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56008CK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56202TA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G56326BL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G56381GU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57046ME", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57484FV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G57595UE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57667LR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57713YP", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57741SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G57930PW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G57989AD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58183RP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58203BP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G58217PN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58381OV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G58995TS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G59083LK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G59130YV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G59182CT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59513YA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G59797AX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G59885HK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G59910CM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G60230HH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G60345PE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G60574ZE", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G60601DL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G60646UB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G61206XE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G61449JV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G61456PF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G61702UX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G61846BY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G62479EJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G63035DM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G63045FB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G63337SS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G63428QC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G63904YT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G64330NA", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G64334QQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G64741WD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G64863JJ", "type": "N-linked", "subtype": "Bisected" }, { "glytoucan_ac": "G65030HB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G65160UI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G65221OO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G65518IK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G65665US", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G66129DI", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G66257KQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G66544RE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G66728LX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G67062YO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G67660KD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G67943UF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G67954RA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G68054GF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G68349PE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G68748RA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G69344NL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G69480BN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70358QM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70651XZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G70765RP", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G70899FX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71470CO", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G71534SX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71565MZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G71958HL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G72057XQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G72079JG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G72103RY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G72606LT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G73063PT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G73100ZP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G73573GX", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G73716BT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G73896IF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G73946HM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G74054RO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G74248TD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G74541EU", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G74571ZF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G74673OI", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G74984EY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G75410DZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G75811ON", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G75829ZK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G75896QL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G76019KH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G76084VW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G76167HQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G76408BJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G76651FR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G76666KS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G76778IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G76979BI", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G77480AW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G77627UV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G77969OS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G78193LX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G78280YO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G78376ZV", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G78402VR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G78980OK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G79071YL", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G79242MX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G79294JC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G79370VG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G79661CG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G79807VL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G79916GF", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G80019AK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80200FC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G80570FW", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81356NS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G81632RP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81819VG", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G81853KM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G81933FO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G82207VX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82265ZR", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G82371GR", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G82959GZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G83161QT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G83239SF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G83296CO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G83354MH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G83371GE", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G83417GO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G83600PQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G83829LQ", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G84043FQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G84170WO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G84386LM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G84764CL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85059ID", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85141ZP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85200FA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85230NK", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85238RP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85292WS", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85439GN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G85623YE", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G85792MM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85891WT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G85900AY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G86053IC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G86182SO", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G86221TY", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G86385RC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G86419CL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G86555OF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G86582QF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G87138HL", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G87704SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G87784HD", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G88423HG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G88561PH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G88727SH", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G88904IL", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G88998CC", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89058RF", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G89153EV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89253ZV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89669MO", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G89864BN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89870WK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G89950AZ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90065BD", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G90107JW", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G90263JN", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90677OQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G90923YW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91089ZR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91150PB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91155GP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91219PM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G91704UR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G91743DM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G92042VQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G92083LG", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G92165DB", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G92383TF", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G92613RT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G92805XC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G92983WW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G93218WT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G93527UH", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G93575MM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G94013DC", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G94252JR", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G94481KZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G94748CQ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G95021HX", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G95070PP", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G95227SJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G95633RJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G95677OZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G95713LQ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G95732UV", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G95796NP", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G95963DM", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G96024GG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G96153DN", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G96381BJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G96650VB", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G96715HA", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G97166FW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G97455PT", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G97511SW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G97674DG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G97972ZM", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G98048XD", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G98193FW", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G98256YA", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G98408DS", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G98516BG", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G98945HT", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G99102GZ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G99629OK", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G99669MJ", "type": "N-linked", "subtype": "High mannose" }, { "glytoucan_ac": "G99876AH", "type": "N-linked", "subtype": "High mannose" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 593, "end_pos": 595 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5V7-1", "uniprot_ac": "I3L5V7", "uniprot_id": "I3L5V7_PIG", "mass": { "chemical_mass": 16713.0, "monoisotopic_mass": 16713.0 }, "refseq": {}, "gene_names": [ { "name": "GMFB", "type": "recommended", "evidence": [ { "id": "I3L5V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5V7" } ] } ], "protein_names": [ { "name": "Glia maturation factor", "type": "recommended", "evidence": [ { "id": "I3L5V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5V7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "This protein causes differentiation of brain cells, stimulation of neural regeneration, and inhibition of proliferation of tumor cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A6Y3", "url": "https://www.uniprot.org/uniprotkb/A0A287A6Y3#function" }, { "database": "UniProtKB", "id": "ARBA00037584", "url": "https://www.uniprot.org/uniprotkb/ARBA00037584#function" }, { "database": "UniProtKB", "id": "A0A8W4F688", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F688#function" }, { "database": "UniProtKB", "id": "I3L5V7", "url": "https://www.uniprot.org/uniprotkb/I3L5V7#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5V7", "url": "https://www.uniprot.org/uniprotkb/I3L5V7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GMFB", "url": "https://www.uniprot.org/uniprotkb/I3L5V7", "locus": { "chromosome": "1", "start_pos": 183846680, "end_pos": 183863398, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026294", "url": "https://www.ensembl.org/id/ENSSSCG00000026294" } ] } } ], "crossref": [ { "id": "ENSSSCG00000026294", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026294", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11283", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11283", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EWKMLYA", "url": "https://omabrowser.org/oma/group/EWKMLYA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11249", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11249", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11249:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11249:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00241", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00241", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A6Y3", "url": "https://www.uniprot.org/uniprotkb/A0A287A6Y3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A6Y3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A6Y3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F688", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F688", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F688-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F688-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFD6", "url": "https://www.uniprot.org/uniprotkb/F1SFD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SFD6-1", "url": "https://www.uniprot.org/uniprotkb/F1SFD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5V7", "url": "https://www.uniprot.org/uniprotkb/I3L5V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5V7-1", "url": "https://www.uniprot.org/uniprotkb/I3L5V7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH", "length": 142, "header": "tr|I3L5V7-1|I3L5V7_PIG Isoform 1 of Glia maturation factor OS=Sus scrofa OX=9823 GN=GMFB PE=1 SV=3 CANONICAL=I3L5V7-1" }, "isoforms": [ { "isoform_ac": "A0A287A6Y3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5V7/entry#A0A287A6Y3-1", "sequence": { "sequence": "MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVVFLFYLLVETIFSICK", "length": 136, "header": "tr|A0A287A6Y3-1|I3L5V7_PIG Computationally mapped isoform of Glia maturation factor OS=Sus scrofa OX=9823 GN=GMFB PE=1 SV=1 CANONICAL=I3L5V7-1" }, "locus": { "chromosome": "1", "start_pos": 183863257, "end_pos": 183851891, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039702.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039702.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039527.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039527.1" } ] } }, { "isoform_ac": "A0A8W4F688-1", "url": "https://www.uniprot.org/uniprotkb/I3L5V7/entry#A0A8W4F688-1", "sequence": { "sequence": "SESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKMKVFRTAQ", "length": 126, "header": "tr|A0A8W4F688-1|I3L5V7_PIG Computationally mapped isoform of Glia maturation factor OS=Sus scrofa OX=9823 GN=GMFB PE=1 SV=1 CANONICAL=I3L5V7-1" }, "locus": { "chromosome": "1", "start_pos": 183858517, "end_pos": 183851823, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105998.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105998.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074617.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074617.1" } ] } }, { "isoform_ac": "F1SFD6-1", "url": "https://www.uniprot.org/uniprotkb/I3L5V7/entry#F1SFD6-1", "sequence": { "sequence": "MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIRYFTR", "length": 38, "header": "tr|F1SFD6-1|I3L5V7_PIG Computationally mapped isoform of Glia maturation factor OS=Sus scrofa OX=9823 GN=GMFB PE=1 SV=4 CANONICAL=I3L5V7-1" }, "locus": { "chromosome": "1", "start_pos": 183863257, "end_pos": 183855973, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005565.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005565.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005427.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005427.4" } ] } }, { "isoform_ac": "I3L5V7-1", "url": "https://www.uniprot.org/uniprotkb/I3L5V7/entry#I3L5V7-1", "sequence": { "sequence": "MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH", "length": 142, "header": "tr|I3L5V7-1|I3L5V7_PIG Isoform 1 of Glia maturation factor OS=Sus scrofa OX=9823 GN=GMFB PE=1 SV=3 CANONICAL=I3L5V7-1" }, "locus": { "chromosome": "1", "start_pos": 183863257, "end_pos": 183850342, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031644.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031644.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019408.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019408.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SFD6", "url": "https://www.uniprot.org/uniprotkb/F1SFD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "P60983-1", "protein_name": "Glia maturation factor beta", "gene_name": "GMFB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH", "length": 142 }, "evidence": [ { "id": "I3L5V7", "url": "https://omabrowser.org/oma/group/I3L5V7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P60984-1", "protein_name": "Glia maturation factor beta", "gene_name": "GMFB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH", "length": 142 }, "evidence": [ { "id": "I3L5V7", "url": "https://omabrowser.org/oma/group/I3L5V7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54S93-1", "protein_name": "ADF-H domain-containing protein", "gene_name": "gmfA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATCTLPDEYFEEFKALKKERSPKNTAMVFMIDKSKHEFKIEETFVDISLEKLQEELSNTSPRYIVYVYKHTHPDGRQSFPMVFIYFMPKGISPAVAMTYSANKEILVNKLEIMKSFNAETVETLTEPWLKEKLAFFK", "length": 138 }, "evidence": [ { "id": "I3L5V7", "url": "https://omabrowser.org/oma/group/I3L5V7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q63228-1", "protein_name": "Glia maturation factor beta", "gene_name": "Gmfb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSESLVVCDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDKRLVVLDEELEGVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPLGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTEEWLREKLGFFH", "length": 142 }, "evidence": [ { "id": "I3L5V7", "url": "https://omabrowser.org/oma/group/I3L5V7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9VJL6-1", "protein_name": "Glia maturation factor", "gene_name": "GMF", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDNQICDISNEVLEELKKFRFSKSKNNAALILKVDREKQTVVLDEFIDDISVDELQDTLPGHQPRYVIYTYKMVHDDQRISYPMCFIFYTPRDSQIELQMMYACTKSALQREVDLTRVYEIRELDELTEEWLKAKLK", "length": 138 }, "evidence": [ { "id": "I3L5V7", "url": "https://omabrowser.org/oma/group/I3L5V7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "actin filament debranching", "id": "GO:0071846", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071846", "evidence": [ { "database": "UniProtKB", "id": "I3L5V7", "url": "https://www.uniprot.org/uniprotkb/I3L5V7" } ], "pmid": "" }, { "name": "negative regulation of Arp2/3 complex-mediated actin nucleation", "id": "GO:0034316", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034316", "evidence": [ { "database": "UniProtKB", "id": "I3L5V7", "url": "https://www.uniprot.org/uniprotkb/I3L5V7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "I3L5V7", "url": "https://www.uniprot.org/uniprotkb/I3L5V7" } ], "pmid": "" }, { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "I3L5V7", "url": "https://www.uniprot.org/uniprotkb/I3L5V7" } ], "pmid": "" }, { "name": "Arp2/3 complex binding", "id": "GO:0071933", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071933", "evidence": [ { "database": "UniProtKB", "id": "I3L5V7", "url": "https://www.uniprot.org/uniprotkb/I3L5V7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cortical actin cytoskeleton", "id": "GO:0030864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030864", "evidence": [ { "database": "UniProtKB", "id": "I3L5V7", "url": "https://www.uniprot.org/uniprotkb/I3L5V7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5V7" }, { "id": "PS51263", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51263" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ADF-H", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 139, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L7H6-1", "uniprot_ac": "I3L7H6", "uniprot_id": "I3L7H6_PIG", "mass": { "chemical_mass": 85984.0, "monoisotopic_mass": 85984.0 }, "refseq": { "ac": "XP_005667817", "name": "histone-lysine N-methyltransferase EZH2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667817" }, "gene_names": [ { "name": "EZH2", "type": "recommended", "evidence": [ { "id": "I3L7H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ] }, { "name": "EZH2", "type": "synonym", "evidence": [ { "id": "XP_005667817", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667817" } ] } ], "protein_names": [ { "name": "Histone-lysine N-methyltransferase EZH2", "type": "recommended", "evidence": [ { "id": "I3L7H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7H6/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.356", "type": "synonym", "evidence": [ { "id": "I3L7H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7H6/entry#names_and_taxonomy" } ] }, { "name": "histone-lysine N-methyltransferase EZH2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005667817", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667817" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EZH2", "url": "https://www.uniprot.org/uniprotkb/I3L7H6", "locus": { "chromosome": "9", "start_pos": 109450941, "end_pos": 109385015, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028840", "url": "https://www.ensembl.org/id/ENSSSCG00000028840" } ] } } ], "crossref": [ { "id": "I3L7H6", "url": "https://alphafold.ebi.ac.uk/entry/I3L7H6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028840", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028840", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00167", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00167", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19218", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19218", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100625497", "url": "https://www.ncbi.nlm.nih.gov/gene/100625497", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021654", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021654", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026489", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026489", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045318", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045318", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048358", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048358", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "I3L7H6", "url": "https://www.orthodb.org/?gene=I3L7H6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45747", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45747", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45747:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45747:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00856", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00856", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11616", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11616", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18264", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18264", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212300", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212300", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559580", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3214841", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214841", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8943724", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8943724", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8953750", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8953750", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9764725", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9909649", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909649", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005667817", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667817", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "60292", "url": "https://www.rhea-db.org/rhea/60292", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZYP4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZYP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYP4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1URH1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1URH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1URY3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1URY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1URY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R580", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R580", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R580-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R580-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FZ52", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FZ52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FZ52-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FZ52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7H6-1", "url": "https://www.uniprot.org/uniprotkb/I3L7H6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPDEREEKQKDLEENREDKETRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHRKFSYSFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDEASSSSEANSRCQTPIKMKPNAEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSVIAPAPTEDVDTPPRKKKRKHRLWAAHCRKIQLKKDGSSNHVYNYQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQADALKYVGIEREMEIP", "length": 751, "header": "tr|I3L7H6-1|I3L7H6_PIG Isoform 1 of Histone-lysine N-methyltransferase EZH2 OS=Sus scrofa OX=9823 GN=EZH2 PE=4 SV=4 CANONICAL=I3L7H6-1" }, "isoforms": [ { "isoform_ac": "A0A286ZYP4-1", "url": "https://www.uniprot.org/uniprotkb/I3L7H6/entry#A0A286ZYP4-1", "sequence": { "sequence": "MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPDEREEKQKDLEENREDKETRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHPFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDEASSSSEANSRCQTPIKMKPNAEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSVIAPAPTEDVDTPPRKKKRKHRLWAAHCRKIQLKKDGSSNHVYNYQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKARLMR", "length": 703, "header": "tr|A0A286ZYP4-1|I3L7H6_PIG Computationally mapped isoform of Histone-lysine N-methyltransferase EZH2 OS=Sus scrofa OX=9823 GN=EZH2 PE=4 SV=2 CANONICAL=I3L7H6-1" }, "locus": { "chromosome": "9", "start_pos": 109450639, "end_pos": 109411989, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053921.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053921.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036760.3", "url": "https://www.ensembl.org/id/ENSSSCP00000036760.3" } ] } }, { "isoform_ac": "A0A4X1URH1-1", "url": "https://www.uniprot.org/uniprotkb/I3L7H6/entry#A0A4X1URH1-1", "sequence": { "sequence": "MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSCSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPDEREEKQKDLEENREDKETRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHPFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDEASSSSEANSRCQTPIKMKPNAEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSVIAPAPTEDVDTPPRKKKRKHRLWAAHCRKIQLKKGQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQADALKYVGIEREMEIP", "length": 695, "header": "tr|A0A4X1URH1-1|I3L7H6_PIG Computationally mapped isoform of Histone-lysine N-methyltransferase EZH2 OS=Sus scrofa OX=9823 GN=EZH2 PE=4 SV=1 CANONICAL=I3L7H6-1" }, "locus": { "chromosome": "9", "start_pos": 109450677, "end_pos": 109411989, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056824.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056824.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034678.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034678.2" } ] } }, { "isoform_ac": "A0A4X1URY3-1", "url": "https://www.uniprot.org/uniprotkb/I3L7H6/entry#A0A4X1URY3-1", "sequence": { "sequence": "MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTREVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPDEREEKQKDLEENREDKETRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHPFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDEASSSSEANSRCQTPIKMKPNAEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSVIAPAPTEDVDTPPRKKKRKHRLWAAHCRKIQLKKDGSSNHVYNYQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQADALKYVGIEREMEIP", "length": 707, "header": "tr|A0A4X1URY3-1|I3L7H6_PIG Computationally mapped isoform of Histone-lysine N-methyltransferase EZH2 OS=Sus scrofa OX=9823 GN=EZH2 PE=4 SV=1 CANONICAL=I3L7H6-1" }, "locus": { "chromosome": "9", "start_pos": 109450677, "end_pos": 109411989, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050801.2", "url": "https://www.ensembl.org/id/ENSSSCT00000050801.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043044.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043044.2" } ] } }, { "isoform_ac": "A0A5G2R580-1", "url": "https://www.uniprot.org/uniprotkb/I3L7H6/entry#A0A5G2R580-1", "sequence": { "sequence": "MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPDEREEKQKDLEENREDKETRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHPFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDEASSSSEANSRCQTPIKMKPNAEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSVIAPAPTEDVDTPPRKKKRKHRSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQADALKYVGIEREMEIP", "length": 711, "header": "tr|A0A5G2R580-1|I3L7H6_PIG Computationally mapped isoform of Histone-lysine N-methyltransferase EZH2 OS=Sus scrofa OX=9823 GN=EZH2 PE=4 SV=2 CANONICAL=I3L7H6-1" }, "locus": { "chromosome": "9", "start_pos": 109450677, "end_pos": 109411989, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083277.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083277.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072247.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072247.2" } ] } }, { "isoform_ac": "A0A8D1FZ52-1", "url": "https://www.uniprot.org/uniprotkb/I3L7H6/entry#A0A8D1FZ52-1", "sequence": { "sequence": "MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRELPVVQPHSRLLYQLVDCSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPDEREEKQKDLEENREDKETRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHPFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDEASSSSEANSRCQTPIKMKPNAEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSVIAPAPTEDVDTPPRKKKRKHRLWAAHCRKIQLKKDGSSNHVYNYQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQADALKYVGIEREMEIP", "length": 762, "header": "tr|A0A8D1FZ52-1|I3L7H6_PIG Computationally mapped isoform of Histone-lysine N-methyltransferase EZH2 OS=Sus scrofa OX=9823 GN=EZH2 PE=4 SV=1 CANONICAL=I3L7H6-1" }, "locus": { "chromosome": "9", "start_pos": 109450677, "end_pos": 109411989, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064179.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064179.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048035.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048035.2" } ] } }, { "isoform_ac": "I3L7H6-1", "url": "https://www.uniprot.org/uniprotkb/I3L7H6/entry#I3L7H6-1", "sequence": { "sequence": "MGQTGKKSEKGPVCWRKRVKSEYMRLRQLKRFRRADEVKSMFSSNRQKILERTEILNQEWKQRRIQPVHILTSVSSLRGTRECSVTSDLDFPTQVIPLKTLNAVASVPIMYSWSPLQQNFMVEDETVLHNIPYMGDEVLDQDGTFIEELIKNYDGKVHGDRECGFINDEIFVELVNALGQYNDDDDDDDGDDPDEREEKQKDLEENREDKETRPPRKFPSDKIFEAISSMFPDKGTAEELKEKYKELTEQQLPGALPPECTPNIDGPNAKSVQREQSLHSFHTLFCRRCFKYDCFLHRKFSYSFHATPNTYKRKNTETALDNKPCGPQCYQHLEGAKEFAAALTAERIKTPPKRPGGRRRGRLPNNSSRPSTPTINVLESKDTDSDREAGTETGGENNDKEEEEKKDEASSSSEANSRCQTPIKMKPNAEPPENVEWSGAEASMFRVLIGTYYDNFCAIARLIGTKTCRQVYEFRVKESSVIAPAPTEDVDTPPRKKKRKHRLWAAHCRKIQLKKDGSSNHVYNYQPCDHPRQPCDSSCPCVIAQNFCEKFCQCSSECQNRFPGCRCKAQCNTKQCPCYLAVRECDPDLCLTCGAADHWDSKNVSCKNCSIQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEADRRGKVYDKYMCSFLFNLNNDFVVDATRKGNKIRFANHSVNPNCYAKVMMVNGDHRIGIFAKRAIQTGEELFFDYRYSQADALKYVGIEREMEIP", "length": 751, "header": "tr|I3L7H6-1|I3L7H6_PIG Isoform 1 of Histone-lysine N-methyltransferase EZH2 OS=Sus scrofa OX=9823 GN=EZH2 PE=4 SV=4 CANONICAL=I3L7H6-1" }, "locus": { "chromosome": "9", "start_pos": 109450677, "end_pos": 109411989, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023706.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023706.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019981.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019981.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZYP4", "url": "https://www.uniprot.org/uniprotkb/A0A286ZYP4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212300", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212300", "resource": "Reactome", "description": "PRC2 methylates histones and DNA" }, { "id": "R-SSC-2559580", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "resource": "Reactome", "description": "Oxidative Stress Induced Senescence" }, { "id": "R-SSC-3214841", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214841", "resource": "Reactome", "description": "PKMTs methylate histone lysines" }, { "id": "R-SSC-8943724", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8943724", "resource": "Reactome", "description": "Regulation of PTEN gene transcription" }, { "id": "R-SSC-8953750", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8953750", "resource": "Reactome", "description": "Transcriptional Regulation by E2F6" }, { "id": "R-SSC-9764725", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "resource": "Reactome", "description": "Negative Regulation of CDH1 Gene Transcription" }, { "id": "R-SSC-9909649", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909649", "resource": "Reactome", "description": "Regulation of PD-L1(CD274) transcription" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 15, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "rhythmic process", "id": "GO:0048511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048511", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "subtelomeric heterochromatin formation", "id": "GO:0031509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031509", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "B cell differentiation", "id": "GO:0030183", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030183", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "regulation of circadian rhythm", "id": "GO:0042752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042752", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "positive regulation of epithelial to mesenchymal transition", "id": "GO:0010718", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010718", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "positive regulation of cell cycle G1/S phase transition", "id": "GO:1902808", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902808", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "heterochromatin formation", "id": "GO:0031507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031507", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "regulatory ncRNA-mediated heterochromatin formation", "id": "GO:0031048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031048", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "negative regulation of retinoic acid receptor signaling pathway", "id": "GO:0048387", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048387", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "facultative heterochromatin formation", "id": "GO:0140718", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140718", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "ESC/E(Z) complex", "id": "GO:0035098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035098", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "chromatin silencing complex", "id": "GO:0005677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005677", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "pronucleus", "id": "GO:0045120", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045120", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "pericentric heterochromatin", "id": "GO:0005721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005721", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "chromosome, telomeric region", "id": "GO:0000781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000781", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 14, "go_terms": [ { "name": "histone H3K27 trimethyltransferase activity", "id": "GO:0140951", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140951", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "ribonucleoprotein complex binding", "id": "GO:0043021", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043021", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "RNA polymerase II core promoter sequence-specific DNA binding", "id": "GO:0000979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000979", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "chromatin DNA binding", "id": "GO:0031490", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031490", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "nucleosome binding", "id": "GO:0031491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031491", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "promoter-specific chromatin binding", "id": "GO:1990841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990841", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "primary miRNA binding", "id": "GO:0070878", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070878", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "histone H3K27 methyltransferase activity", "id": "GO:0046976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046976", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "transcription corepressor binding", "id": "GO:0001222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001222", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" }, { "name": "lncRNA binding", "id": "GO:0106222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106222", "evidence": [ { "database": "UniProtKB", "id": "I3L7H6", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 603, "end_pos": 605, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 693, "end_pos": 695, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "60292", "name": "", "equation": "L-lysyl(27)-[histone H3] + 3 S-adenosyl-L-methionine = N(6),N(6),N(6)-trimethyl-L-lysyl(27)-[histone H3] + 3 S-adenosyl-L-homocysteine + 3 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "60292", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60292" } ] }, { "id": "R-SSC-212222", "name": "PRC2 recruits DNA methyltransferases", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-212222", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212222" } ] }, { "id": "R-SSC-212252", "name": "Polycomb Repressive Complex 2 (PRC2) Is recruited to chromatin", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-212252", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212252" } ] }, { "id": "R-SSC-212263", "name": "PRC2 trimethylates histone H3 at lysine-27", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-212263", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212263" } ] }, { "id": "R-SSC-212269", "name": "DNMT1,3A,3B:PRC2 methylates cytosine and histone H3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-212269", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212269" } ] }, { "id": "R-SSC-3240295", "name": "PRC2-EZH2 trimethylates nucleosomes associated with CDKN2A promoter", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-3240295", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3240295" } ] }, { "id": "R-SSC-5638332", "name": "PRC2 (EZH2) Core:AEBP2 methylates lysine-28 of histone H3 (H3K27)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5638332", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5638332" } ] }, { "id": "R-SSC-8943817", "name": "MECOM (EVI1) recruits polycomb repressor complexes (PRCs) to the PTEN gene promoter", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8943817", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8943817" } ] }, { "id": "R-SSC-8954110", "name": "E2F6:TFDP1:EPC1 binds the PRC2 complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8954110", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8954110" } ] }, { "id": "R-SSC-9764932", "name": "PRC2 (EZH2) core complex methylates nucleosomes at CDH1 gene promoter", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9764932", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764932" } ] }, { "id": "R-SSC-9909631", "name": "Trimethylation of CD274 gene promoter by EZH2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9909631", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909631" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L7H6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 751, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L7H6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L7H6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L7H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" }, { "id": "PS51633", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51633" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CXC", "eco_id": "ECO_0000259", "start_pos": 508, "end_pos": 610, "start_aa": "Cys", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L7H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7H6" }, { "id": "PS50280", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50280" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SET", "eco_id": "ECO_0000259", "start_pos": 617, "end_pos": 732, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 365, "end_pos": 367 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 603, "end_pos": 605 }, { "start_pos": 608, "end_pos": 610 }, { "start_pos": 693, "end_pos": 695 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSU5-1", "uniprot_ac": "F1SSU5", "uniprot_id": "F1SSU5_PIG", "mass": { "chemical_mass": 64426.0, "monoisotopic_mass": 64426.0 }, "refseq": { "ac": "XP_005672190", "name": "frizzled-5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672190" }, "gene_names": [ { "name": "FZD5", "type": "recommended", "evidence": [ { "id": "F1SSU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ] }, { "name": "FZD5", "type": "synonym", "evidence": [ { "id": "XP_005672190", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672190" } ] } ], "protein_names": [ { "name": "Frizzled-5", "type": "recommended", "evidence": [ { "id": "F1SSU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSU5/entry#names_and_taxonomy" } ] }, { "name": "frizzled-5", "type": "synonym", "evidence": [ { "id": "XP_005672190", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672190" } ] } ], "function": [ { "annotation": "Receptor for Wnt proteins. Functions in the canonical Wnt/beta-catenin signaling pathway. In vitro activates WNT2, WNT10B, WNT5A, but not WNT2B or WNT4 signaling. In neurons, activation by WNT7A promotes formation of synapses. May be involved in transduction and intercellular transmission of polarity information during tissue morphogenesis and/or in differentiated tissues. Plays a role in yolk sac angiogenesis and in placental vascularization. Plays a role in ocular development.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB0#function" }, { "database": "UniProtKB", "id": "ARBA00053382", "url": "https://www.uniprot.org/uniprotkb/ARBA00053382#function" }, { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FZD5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5", "locus": { "chromosome": "15", "start_pos": 110914009, "end_pos": 110921353, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016140", "url": "https://www.ensembl.org/id/ENSSSCG00000016140" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016140", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016140", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07460", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07460", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519058", "url": "https://www.ncbi.nlm.nih.gov/gene/100519058", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015526", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015526", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519058", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519058", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NCAIPCK", "url": "https://omabrowser.org/oma/group/NCAIPCK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSU5", "url": "https://www.orthodb.org/?gene=F1SSU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11309", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11309", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11309:SF136", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11309:SF136", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01392", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01392", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-4086398", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4086398", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4608870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641262", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641262", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641263", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641263", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5140745", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5140745", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005672190", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672190", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QRB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QRB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSU5-1", "url": "https://www.uniprot.org/uniprotkb/F1SSU5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARPDPSAPPSLLLLLLAQLAGRATAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIHCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEVLCMDYNRSEATTAPPRPFPAKPTLSGPPGAPASGSDCVAGGPSVCKCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSPDERTFATFWIGLWSVLCFISTSTTVATFLIDMERFRYPERPIIFLSACYLCVSLGFLVRLVVGHASVACSREHSHIHYETTGPALCTVVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLFRIRSVIKQGGTKTDKLEKLMIRIGIFTLLYTVPASIVVACYLYEQHYRESWEAALTCACPGPDAGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTVESWRRFTSRCCCRPRRGHKSGGATATGDYAEASAALTGRTGPPGPAAATYHKQVSLSHV", "length": 586, "header": "tr|F1SSU5-1|F1SSU5_PIG Isoform 1 of Frizzled-5 OS=Sus scrofa OX=9823 GN=FZD5 PE=1 SV=1 CANONICAL=F1SSU5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QRB0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSU5/entry#A0A5G2QRB0-1", "sequence": { "sequence": "MARPDPSAPPSLLLLLLAQLAGRATAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIHCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEVLCMDYNRSEATTAPPRPFPAKPTLSGPPGAPASGSDCVAGGPSVCKCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSPDERTFATFWIGLWSVLCFISTSTTVATFLIDMERFRYPERPIIFLSACYLCVSLGFLVRLVVGHASVACSREHSHIHYETTGPALCTVVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLFRIRSVIKQGGTKTDKLEKLMIRIGIFTLLYTVPASIVVACYLYEQHYRESWEAALTCACPGPDAGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTVESWRRFTSRCCCRPRRGHKSGGATATGDYAEASAALTGRTGPPGPAAATYHKQKDQGQVGGTKL", "length": 591, "header": "tr|A0A5G2QRB0-1|F1SSU5_PIG Computationally mapped isoform of Frizzled-5 OS=Sus scrofa OX=9823 GN=FZD5 PE=1 SV=2 CANONICAL=F1SSU5-1" }, "locus": { "chromosome": "15", "start_pos": 110920187, "end_pos": 110915013, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071296.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071296.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060810.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060810.2" } ] } }, { "isoform_ac": "F1SSU5-1", "url": "https://www.uniprot.org/uniprotkb/F1SSU5/entry#F1SSU5-1", "sequence": { "sequence": "MARPDPSAPPSLLLLLLAQLAGRATAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIHCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEVLCMDYNRSEATTAPPRPFPAKPTLSGPPGAPASGSDCVAGGPSVCKCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSPDERTFATFWIGLWSVLCFISTSTTVATFLIDMERFRYPERPIIFLSACYLCVSLGFLVRLVVGHASVACSREHSHIHYETTGPALCTVVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLFRIRSVIKQGGTKTDKLEKLMIRIGIFTLLYTVPASIVVACYLYEQHYRESWEAALTCACPGPDAGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTVESWRRFTSRCCCRPRRGHKSGGATATGDYAEASAALTGRTGPPGPAAATYHKQVSLSHV", "length": 586, "header": "tr|F1SSU5-1|F1SSU5_PIG Isoform 1 of Frizzled-5 OS=Sus scrofa OX=9823 GN=FZD5 PE=1 SV=1 CANONICAL=F1SSU5-1" }, "locus": { "chromosome": "15", "start_pos": 110920187, "end_pos": 110918430, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017573.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017573.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017100.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017100.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QRB0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QRB0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519058", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519058", "resource": "KEGG Pathway" }, { "id": "R-SSC-4086398", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4086398", "resource": "Reactome", "description": "Ca2+ pathway" }, { "id": "R-SSC-4608870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "resource": "Reactome", "description": "Asymmetric localization of PCP proteins" }, { "id": "R-SSC-4641262", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641262", "resource": "Reactome", "description": "Disassembly of the destruction complex and recruitment of AXIN to the membrane" }, { "id": "R-SSC-4641263", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641263", "resource": "Reactome", "description": "Regulation of FZD by ubiquitination" }, { "id": "R-SSC-5140745", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5140745", "resource": "Reactome", "description": "WNT5A-dependent internalization of FZD2, FZD5 and ROR2" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MGM1-1", "protein_name": "Frizzled-5", "gene_name": "FZD5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARPDPSAPPSLLLLLLAQLAGRAAAASKAPACQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIHCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEVLCMDYNRSEATTAPPRPFPVKPTLSGLPGSPASGNDCAAGGPSVCKCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSPDERTFATFWIGLWSVLCFISTSTTVATFLIDMERFRYPERPIIFLSACYLCVSLGFLVRLVVGHASVACSREHSHIHYETTGPALCTVVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLFRIRSVIKQGGTKTDKLEKLMIRIGIFTLLYTVPASIVVACYLYEQHYRESWEAALTCACPGPDSGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTVESWRRFTSRCCCRPRRGHKSGGATAAGDYAEASAALTGRTGPPGPAAAYHKQVSLSHV", "length": 585 }, "evidence": [ { "id": "F1SSU5", "url": "https://omabrowser.org/oma/group/F1SSU5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q13467-1", "protein_name": "Frizzled-5", "gene_name": "FZD5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARPDPSAPPSLLLLLLAQLVGRAAAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGRDAEVLCMDYNRSEATTAPPRPFPAKPTLPGPPGAPASGGECPAGGPFVCKCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSADERTFATFWIGLWSVLCFISTSTTVATFLIDMERFRYPERPIIFLSACYLCVSLGFLVRLVVGHASVACSREHNHIHYETTGPALCTIVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLFRIRSVIKQGGTKTDKLEKLMIRIGIFTLLYTVPASIVVACYLYEQHYRESWEAALTCACPGHDTGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTVESWRRFTSRCCCRPRRGHKSGGAMAAGDYPEASAALTGRTGPPGPAATYHKQVSLSHV", "length": 585 }, "evidence": [ { "id": "F1SSU5", "url": "https://omabrowser.org/oma/group/F1SSU5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CHL0-1", "protein_name": "Frizzled-5", "gene_name": "Fzd5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARPDPSAPPSLLLLLLAQLVGRAAAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIHCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGGDAEVLCMDYNRSEATTASPKSFPAKPTLPGPPGAPSSGGECPSGGPSVCTCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSPDERTFATFWIGLWSVLCFISTSTTVATFLIDMERFRYPERPIIFLSACYLCVSLGFLVRLVVGHASVACSREHSHIHYETTGPALCTVVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGVCYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLFRIRSVIKQGGTKTDKLEKLMIRIGIFTLLYTVPASIVVACYLYEQHYRESWEAALTCACPGSDAGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTLESWRRFTSRCCCSSRRGHKSGGAMVAGDYAEASAALTGRTGPPGPAAAYHKQVSLSHV", "length": 585 }, "evidence": [ { "id": "F1SSU5", "url": "https://omabrowser.org/oma/group/F1SSU5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9EQD0-1", "protein_name": "Frizzled-5", "gene_name": "Fzd5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARPDPSAPPSLLLLLLAQLVGRAAAASKAPVCQEITVPMCRGIGYNLTHMPNQFNHDTQDEAGLEVHQFWPLVEIHCSPDLRFFLCSMYTPICLPDYHKPLPPCRSVCERAKAGCSPLMRQYGFAWPERMSCDRLPVLGGDAEVLCMDYNRSEATTASPKSFPAKPTLPGPPGAPSSGGECPSGGPSVCTCREPFVPILKESHPLYNKVRTGQVPNCAVPCYQPSFSPDERTFATFWIGLWSVLCFISTSTTVATFLIDMERFRYPERPIIFLSACYLCVSLGFLVRLVVGHASVACSREHSHIHYETTGPALCTVVFLLVYFFGMASSIWWVILSLTWFLAAGMKWGNEAIAGYAQYFHLAAWLIPSVKSITALALSSVDGDPVAGICYVGNQNLNSLRGFVLGPLVLYLLVGTLFLLAGFVSLFRIRSVIKQGGTKTDKLEKLMIRIGIFTLLYTVPASIVVACYLYEQHYRESWEAALTCACPGPDAGQPRAKPEYWVLMLKYFMCLVVGITSGVWIWSGKTLESWRRFTSRCCCSSRRGHKSGGAMAAGDYAEASAALTGRTGPPGPTAAYHKQVSLSHV", "length": 585 }, "evidence": [ { "id": "F1SSU5", "url": "https://omabrowser.org/oma/group/F1SSU5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "amyloid-beta binding", "id": "GO:0001540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001540", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "Wnt-protein binding", "id": "GO:0017147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017147", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "Wnt receptor activity", "id": "GO:0042813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042813", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 12, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "positive regulation of tumor necrosis factor production", "id": "GO:0032760", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032760", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "positive regulation of T cell cytokine production", "id": "GO:0002726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002726", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "positive regulation of type II interferon production", "id": "GO:0032729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032729", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "canonical Wnt signaling pathway", "id": "GO:0060070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060070", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "positive regulation of interleukin-1 beta production", "id": "GO:0032731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032731", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "non-canonical Wnt signaling pathway", "id": "GO:0035567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035567", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "embryonic camera-type eye morphogenesis", "id": "GO:0048596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048596", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "anterior/posterior axis specification, embryo", "id": "GO:0008595", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008595", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "cellular response to molecule of bacterial origin", "id": "GO:0071219", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071219", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "Spemann organizer formation", "id": "GO:0060061", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060061", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" }, { "name": "system development", "id": "GO:0048731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048731", "evidence": [ { "database": "UniProtKB", "id": "F1SSU5", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" }, { "id": "PS50038", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50038" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FZ", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 150, "start_aa": "Ser", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSU5" }, { "id": "PS50261", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50261" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 2 profile 2", "eco_id": "ECO_0000259", "start_pos": 233, "end_pos": 529, "start_aa": "Thr", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PXJ4-1", "uniprot_ac": "F6PXJ4", "uniprot_id": "F6PXJ4_PIG", "mass": { "chemical_mass": 51818.0, "monoisotopic_mass": 51818.0 }, "refseq": {}, "gene_names": [ { "name": "AGER", "type": "recommended", "evidence": [ { "id": "F6PXJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ] } ], "protein_names": [ { "name": "Advanced glycosylation end product-specific receptor", "type": "recommended", "evidence": [ { "id": "F6PXJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4/entry#names_and_taxonomy" } ] }, { "name": "Receptor for advanced glycosylation end products", "type": "synonym", "evidence": [ { "id": "F6PXJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AGER", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4", "locus": { "chromosome": "7", "start_pos": 24218120, "end_pos": 24221162, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001437", "url": "https://www.ensembl.org/id/ENSSSCG00000001437" } ] } } ], "crossref": [ { "id": "F6PXJ4", "url": "https://alphafold.ebi.ac.uk/entry/F6PXJ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001437", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001437", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00096", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00096", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "396591", "url": "https://www.ncbi.nlm.nih.gov/gene/396591", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:396591", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396591", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A5A8Y1", "url": "https://www.orthodb.org/?gene=A5A8Y1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11973", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11973", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11973:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11973:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13895", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13895", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A5A8Y0", "url": "https://www.uniprot.org/uniprotkb/A5A8Y0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A5A8Y0-1", "url": "https://www.uniprot.org/uniprotkb/A5A8Y0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A5A8Y1", "url": "https://www.uniprot.org/uniprotkb/A5A8Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A5A8Y1-1", "url": "https://www.uniprot.org/uniprotkb/A5A8Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PXJ4-1", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGTTAGVWVLVLSLWGEPLLPDTNPPPRKHSAPSPNLPTTFWEPGYCFSISHIHWVLVLSDPPSCPSIVVLPPHRPATVMLCLPSPPPTVLPSWCCLPGVAVSDQNITARIGKPLVLNCKGAPKKPPQQLEWKLNTGRTEAWKVLTPQGGPWDSVARVLPNGSLLLPAVGIQDEGTFRCRATSRNGKETKSNYRVQVYQIPGKPDIVDPASELMAGVPNKVGTCVSEGGYPAGTLSWHLDGKTLIPDGKGVSVKEETRRHPETGLFTLHSELMVTPAWGGAPQPTFSCSFSPSFPRRRALHTAPIRPSVWEPVPLEEVQLVVEPAGGAVPPGGTVTLTCETSVQPPPQIHWTKDGTPLPLSPSPVLLLPEVGPEDQGTYSCVATHPSHGPQKSRAISISIIETGEEGPAAGSVEGPGLGTLALALGILGGLGTAALLVGVIMWHRRQRRGQERKAPENQEEDEEERAELNQPEDPEAAESSAGAP", "length": 487, "header": "tr|F6PXJ4-1|F6PXJ4_PIG Isoform 1 of Advanced glycosylation end product-specific receptor OS=Sus scrofa OX=9823 GN=AGER PE=1 SV=1 CANONICAL=F6PXJ4-1" }, "isoforms": [ { "isoform_ac": "A5A8Y0-1", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4/entry#A5A8Y0-1", "sequence": { "sequence": "MAAGTTAGVWVLVLSLWGVAVSDQNITARIGKPLVLNCKGAPKKPPQQLEWKLGGPWDSVARVLPNGSLLLPAVGIQDEGTFRCRATSRNGKETKSNYRVQVYQIPGKPDIVDPASELMAGVPNKVGTCVSEGGYPAGTLSWHLDGKTLIPDGKGVSVKEETRRHPETGLFTLHSELMVTPAWGGAPQPTFSCSFSPSFPRRRALHTAPIRPSVWEPVPLEEVQLVVEPAGGAVPPGGTVTLTCETSVQPPPQIHWTKDVSDLEQGLGETGEEGPAAGSVEGPGLGTLALALGILGGLGTAALLVGVIMWHRRQRRGQERKAPENQEEDEEERAELNQPEDPEAAESSAGAP", "length": 352, "header": "tr|A5A8Y0-1|F6PXJ4_PIG Computationally mapped isoform of Advanced glycosylation end product-specific receptor OS=Sus scrofa OX=9823 GN=AGER PE=1 SV=1 CANONICAL=F6PXJ4-1" }, "locus": { "chromosome": "7", "start_pos": 24221082, "end_pos": 24218292, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035416.3", "url": "https://www.ensembl.org/id/ENSSSCT00000035416.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028238.1", "url": "https://www.ensembl.org/id/ENSSSCP00000028238.1" } ] } }, { "isoform_ac": "A5A8Y1-1", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4/entry#A5A8Y1-1", "sequence": { "sequence": "MAAGTTAGVWVLVLSLWGVAVSDQNITARIGKPLVLNCKGAPKKPPQQLEWKLNTGRTEAWKVLTPQGGPWDSVARVLPNGSLLLPAVGIQDEGTFRCRATSRNGKETKSNYRVQVYQIPGKPDIVDPASELMAGVPNKVGTCVSEGGYPAGTLSWHLDGKTLIPDGKGVSVKEETRRHPETGLFTLHSELMVTPAWGGAPQPTFSCSFSPSFPRRRALHTAPIRPSVWEPVPLEEVQLVVEPAGGAVPPGGTVTLTCETSVQPPPQIHWTKDGTPLPLSPSPVLLLPEVGPEDQGTYSCVATHPSHGPQKSRAISISIIETGEEGPAAGSVEGPGLGTLALALGILGGLGTAALLVGVIMWHRRQRRGQERKAPENQEEDEEERAELNQPEDPEAAESSAGAP", "length": 404, "header": "tr|A5A8Y1-1|A5A8Y1_PIG Computationally mapped isoform of Advanced glycosylation end product-specific receptor OS=Sus scrofa OX=9823 GN=AGER PE=1 SV=1 CANONICAL=F6PXJ4-1" }, "locus": { "chromosome": "7", "start_pos": 24221082, "end_pos": 24218292, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085229.3", "url": "https://www.ensembl.org/id/ENSSSCT00000085229.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070731.3", "url": "https://www.ensembl.org/id/ENSSSCP00000070731.3" } ] } }, { "isoform_ac": "F6PXJ4-1", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4/entry#F6PXJ4-1", "sequence": { "sequence": "MAAGTTAGVWVLVLSLWGEPLLPDTNPPPRKHSAPSPNLPTTFWEPGYCFSISHIHWVLVLSDPPSCPSIVVLPPHRPATVMLCLPSPPPTVLPSWCCLPGVAVSDQNITARIGKPLVLNCKGAPKKPPQQLEWKLNTGRTEAWKVLTPQGGPWDSVARVLPNGSLLLPAVGIQDEGTFRCRATSRNGKETKSNYRVQVYQIPGKPDIVDPASELMAGVPNKVGTCVSEGGYPAGTLSWHLDGKTLIPDGKGVSVKEETRRHPETGLFTLHSELMVTPAWGGAPQPTFSCSFSPSFPRRRALHTAPIRPSVWEPVPLEEVQLVVEPAGGAVPPGGTVTLTCETSVQPPPQIHWTKDGTPLPLSPSPVLLLPEVGPEDQGTYSCVATHPSHGPQKSRAISISIIETGEEGPAAGSVEGPGLGTLALALGILGGLGTAALLVGVIMWHRRQRRGQERKAPENQEEDEEERAELNQPEDPEAAESSAGAP", "length": 487, "header": "tr|F6PXJ4-1|F6PXJ4_PIG Isoform 1 of Advanced glycosylation end product-specific receptor OS=Sus scrofa OX=9823 GN=AGER PE=1 SV=1 CANONICAL=F6PXJ4-1" }, "locus": { "chromosome": "7", "start_pos": 24221082, "end_pos": 24218292, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001586.3", "url": "https://www.ensembl.org/id/ENSSSCT00000001586.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001544.2", "url": "https://www.ensembl.org/id/ENSSSCP00000001544.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A5A8Y0", "url": "https://www.uniprot.org/uniprotkb/A5A8Y0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:396591", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396591", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "phagocytic cup", "id": "GO:0001891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001891", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "cell junction", "id": "GO:0030054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030054", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "S100 protein binding", "id": "GO:0044548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044548", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "amyloid-beta binding", "id": "GO:0001540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001540", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "signaling receptor activity", "id": "GO:0038023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038023", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 47, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "regulation of cell adhesion", "id": "GO:0030155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030155", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "cellular response to glucose stimulus", "id": "GO:0071333", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071333", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "phagocytosis", "id": "GO:0006909", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006909", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "DNA replication", "id": "GO:0006260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006260", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of cell differentiation", "id": "GO:0045597", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045597", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "negative regulation of biosynthetic process", "id": "GO:0009890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009890", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of multicellular organismal process", "id": "GO:0051240", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051240", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of dendritic cell differentiation", "id": "GO:2001200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001200", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "negative regulation of interleukin-10 production", "id": "GO:0032693", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032693", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "regulation of T cell mediated cytotoxicity", "id": "GO:0001914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001914", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "regulation of CD4-positive, alpha-beta T cell activation", "id": "GO:2000514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000514", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "microglial cell activation", "id": "GO:0001774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001774", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "learning or memory", "id": "GO:0007611", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007611", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of JNK cascade", "id": "GO:0046330", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046330", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "astrocyte activation", "id": "GO:0048143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048143", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of ERK1 and ERK2 cascade", "id": "GO:0070374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070374", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "negative regulation of long-term synaptic potentiation", "id": "GO:1900272", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900272", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of non-canonical NF-kappaB signal transduction", "id": "GO:1901224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901224", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "cellular response to amyloid-beta", "id": "GO:1904646", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904646", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of chemokine production", "id": "GO:0032722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032722", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of interleukin-6 production", "id": "GO:0032755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032755", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "negative regulation of long-term synaptic depression", "id": "GO:1900453", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900453", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of tumor necrosis factor production", "id": "GO:0032760", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032760", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of p38MAPK cascade", "id": "GO:1900745", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900745", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of interleukin-1 beta production", "id": "GO:0032731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032731", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "transcytosis", "id": "GO:0045056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045056", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of activated T cell proliferation", "id": "GO:0042104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042104", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of double-strand break repair", "id": "GO:2000781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000781", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of heterotypic cell-cell adhesion", "id": "GO:0034116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034116", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated DNA replication", "id": "GO:2000105", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000105", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of interleukin-12 production", "id": "GO:0032735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032735", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "glucose mediated signaling pathway", "id": "GO:0010255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010255", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of monocyte extravasation", "id": "GO:2000439", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000439", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "regulation of spontaneous synaptic transmission", "id": "GO:0150003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150003", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of amyloid precursor protein catabolic process", "id": "GO:1902993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902993", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "negative regulation of blood circulation", "id": "GO:1903523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903523", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "positive regulation of endothelin production", "id": "GO:1904472", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904472", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" }, { "name": "transport across blood-brain barrier", "id": "GO:0150104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150104", "evidence": [ { "database": "UniProtKB", "id": "F6PXJ4", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6PXJ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 487, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6PXJ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6PXJ4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F6PXJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PXJ4" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 198, "start_aa": "Pro", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 }, { "start_pos": 163, "end_pos": 165 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQA5-1", "uniprot_ac": "F1SQA5", "uniprot_id": "F1SQA5_PIG", "mass": { "chemical_mass": 55318.0, "monoisotopic_mass": 55318.0 }, "refseq": { "ac": "XP_005669849", "name": "histamine H1 receptor isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669849" }, "gene_names": [ { "name": "HRH1", "type": "recommended", "evidence": [ { "id": "F1SQA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ] }, { "name": "HRH1", "type": "synonym", "evidence": [ { "id": "XP_005669849", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669849" } ] } ], "protein_names": [ { "name": "Histamine H1 receptor", "type": "recommended", "evidence": [ { "id": "F1SQA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQA5/entry#names_and_taxonomy" } ] }, { "name": "histamine H1 receptor isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005669849", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669849" } ] } ], "function": [ { "annotation": "G-protein-coupled receptor for histamine, a biogenic amine that functions as an immune modulator and a neurotransmitter. Through the H1 receptor, histamine mediates the contraction of smooth muscles and increases capillary permeability due to contraction of terminal venules. Also mediates neurotransmission in the central nervous system and thereby regulates circadian rhythms, emotional and locomotor activities as well as cognitive functions.", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5#function" }, { "database": "UniProtKB", "id": "ARBA00045624", "url": "https://www.uniprot.org/uniprotkb/ARBA00045624#function" }, { "database": "UniProtKB", "id": "A0A286ZR00", "url": "https://www.uniprot.org/uniprotkb/A0A286ZR00#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HRH1", "url": "https://www.uniprot.org/uniprotkb/F1SQA5", "locus": { "chromosome": "13", "start_pos": 67411170, "end_pos": 67209127, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011576", "url": "https://www.ensembl.org/id/ENSSSCG00000011576" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011576", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011576", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15050", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15050", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523996", "url": "https://www.ncbi.nlm.nih.gov/gene/100523996", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24247:SF223", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24247:SF223", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-390650", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390650", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005669849", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669849", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZR00", "url": "https://www.uniprot.org/uniprotkb/A0A286ZR00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZR00-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZR00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQA5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTFPNSSFTLEDNMCEANKTTMANPKLMPLVVVLSAVSLVTVGLNLLVLCAVRSERKLHTVGNLYIVSLSVADLIVGAIVMPMNILYLLMSRWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLRYRTKTRASATILVAWLFSFLWVIPILGWHRFVSRTSRRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRRHCQHRELINGSLPSFSEIKLKPENPKVGAKKAGKESPWEVLKRKPKDAGGGPVLKPSSQDSVEMKSPGVSSQEDGELDKFHCFTLNIVQTQMEAEGSSKGYVAVIHSQSQLEMDEQGLNMRGANEISEDQTLGDSQSSRTDSDTPTEPVPGKSKPRSGSSTGLDYIKLTWKRLRSHSRQYVSGLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKSCCNEHVHMFTIWLGYINSTLNPLIYPLCNENFKKTFKKILHIRS", "length": 485, "header": "tr|F1SQA5-1|F1SQA5_PIG Isoform 1 of Histamine H1 receptor OS=Sus scrofa OX=9823 GN=HRH1 PE=3 SV=1 CANONICAL=F1SQA5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZR00-1", "url": "https://www.uniprot.org/uniprotkb/F1SQA5/entry#A0A286ZR00-1", "sequence": { "sequence": "MRKTSQSRSEQELEATLVPMTFPNSSFTLEDNMCEANKTTMANPKLMPLVVVLSAVSLVTVGLNLLVLCAVRSERKLHTVGNLYIVSLSVADLIVGAIVMPMNILYLLMSRWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLRYRTKTRASATILVAWLFSFLWVIPILGWHRFVSRTSRRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRRHCQHRELINGSLPSFSEIKLKPENPKVGAKKAGKESPWEVLKRKPKDAGGGPVLKPSSQDSVEMKSPGVSSQEDGELDKFHCFTLNIVQTQMEAEGSSKGYVAVIHSQSQLEMDEQGLNMRGANEISEDQTLGDSQSSRTDSDTPTEPVPGKSKPRSGSSTGLDYIKLTWKRLRSHSRQYVSGLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKSCCNEHVHMFTIWLGYINSTLNPLIYPLCNENFKKTFKKILHIRS", "length": 504, "header": "tr|A0A286ZR00-1|F1SQA5_PIG Computationally mapped isoform of Histamine H1 receptor OS=Sus scrofa OX=9823 GN=HRH1 PE=3 SV=2 CANONICAL=F1SQA5-1" }, "locus": { "chromosome": "13", "start_pos": 67409598, "end_pos": 67394515, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000056672.3", "url": "https://www.ensembl.org/id/ENSSSCT00000056672.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033895.3", "url": "https://www.ensembl.org/id/ENSSSCP00000033895.3" } ] } }, { "isoform_ac": "F1SQA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQA5/entry#F1SQA5-1", "sequence": { "sequence": "MTFPNSSFTLEDNMCEANKTTMANPKLMPLVVVLSAVSLVTVGLNLLVLCAVRSERKLHTVGNLYIVSLSVADLIVGAIVMPMNILYLLMSRWSLGRPLCLFWLSMDYVASTASIFSVFILCIDRYRSVQQPLRYLRYRTKTRASATILVAWLFSFLWVIPILGWHRFVSRTSRRREDKCETDFYDVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRRHCQHRELINGSLPSFSEIKLKPENPKVGAKKAGKESPWEVLKRKPKDAGGGPVLKPSSQDSVEMKSPGVSSQEDGELDKFHCFTLNIVQTQMEAEGSSKGYVAVIHSQSQLEMDEQGLNMRGANEISEDQTLGDSQSSRTDSDTPTEPVPGKSKPRSGSSTGLDYIKLTWKRLRSHSRQYVSGLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKSCCNEHVHMFTIWLGYINSTLNPLIYPLCNENFKKTFKKILHIRS", "length": 485, "header": "tr|F1SQA5-1|F1SQA5_PIG Isoform 1 of Histamine H1 receptor OS=Sus scrofa OX=9823 GN=HRH1 PE=3 SV=1 CANONICAL=F1SQA5-1" }, "locus": { "chromosome": "13", "start_pos": 67409598, "end_pos": 67408144, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087225.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087225.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066334.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066334.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZR00", "url": "https://www.uniprot.org/uniprotkb/A0A286ZR00" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-390650", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-390650", "resource": "Reactome", "description": "Histamine receptors" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger", "id": "GO:0007187", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007187", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "pmid": "" }, { "name": "chemical synaptic transmission", "id": "GO:0007268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007268", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "pmid": "" }, { "name": "positive regulation of vasoconstriction", "id": "GO:0045907", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045907", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "pmid": "" }, { "name": "regulation of vascular permeability", "id": "GO:0043114", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043114", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "pmid": "" }, { "name": "cellular response to histamine", "id": "GO:0071420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071420", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histamine receptor activity", "id": "GO:0004969", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004969", "evidence": [ { "database": "UniProtKB", "id": "F1SQA5", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQA5" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 466, "start_aa": "Leu", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 228, "end_pos": 230 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L6Z1-1", "uniprot_ac": "I3L6Z1", "uniprot_id": "I3L6Z1_PIG", "mass": { "chemical_mass": 135770.0, "monoisotopic_mass": 135770.0 }, "refseq": { "ac": "XP_020934518", "name": "anion exchange protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934518" }, "gene_names": [ { "name": "SLC4A2", "type": "recommended", "evidence": [ { "id": "I3L6Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ] }, { "name": "SLC4A2", "type": "synonym", "evidence": [ { "id": "XP_020934518", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934518" } ] } ], "protein_names": [ { "name": "Anion exchange protein", "type": "recommended", "evidence": [ { "id": "I3L6Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1/entry#names_and_taxonomy" } ] }, { "name": "anion exchange protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020934518", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934518" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC4A2", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1", "locus": { "chromosome": "18", "start_pos": 6149459, "end_pos": 6165212, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021475", "url": "https://www.ensembl.org/id/ENSSSCG00000021475" } ] } } ], "crossref": [ { "id": "I3L6Z1", "url": "https://alphafold.ebi.ac.uk/entry/I3L6Z1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021475", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021475", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "397203", "url": "https://www.ncbi.nlm.nih.gov/gene/397203", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011531", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011531", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013769", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013769", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018241", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018241", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:397203", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397203", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR11453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11453:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11453:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00955", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00955", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07565", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07565", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-425381", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-425381", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020934518", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934518", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "72363", "url": "https://www.rhea-db.org/rhea/72363", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AI58", "url": "https://www.uniprot.org/uniprotkb/A0A287AI58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AI58-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AI58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMX1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AMX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AMX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6Z1-1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFLLRPQPEPESLGPVTPGFPEQEEDELHRTLGVERFEEILQEAGSRGGEEPGRSYGEEDFEYHRQSSHHIHHPLSTHLPPDTRRRKTAQGSGRKPRRRPGASATGETPTIEEGEEEEDEASEAEGARALTQPSPASTPSSVQFFLQEDEGTDRKAETTSPSPPPPVPHQEAAPRATNGAQTGAPVEEVAAVASGTAGGDDGGASGRPLTKAQPGHRSYNLQERRRIGSMTGVEQALLPRVPTDESEAQTLATADLDLMKSHRFEDVPGVRRHLVRKNAKGSAQSGREGREPGPTPRARPRAPHKPHEVFVELNELLLDKNQEPQWRETARWIKFEEDVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAHQVVEQMVISDQIKAEDRANVLRALLLKHSHPSDEKDFSFPRNISAGSLGSLLGHHHGQGAESDPHVTEPLIGGIPETRLEVERERELPPPAPPAGITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLLGPSSANMDYHEIGRSISTLMSDKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQRQMLKKREEQGRLLPAGAGLEPKSAQDKALLQMVEAAGAVEDDPLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCLAAVIFIYFAALSPAITFGGLLGEKTHDLIGVSELIMSTALQGVIFCLLGAQPLLVIGFSGPLLVFEEAFFSFCTSNNLEYLVGRVWIGFWLVLLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETFYKLVKIFQEHPLHGCSVSNSSEADSGENATWARAAATTQPGNGSSAGPAGPSGQGRPRGQPNTALLSLVLMAGTFFIAFFLRKFKNSRFFPGRVRRVIGDFGVPIAILIMVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVINPLGENSPFPAWMMVASLLPAVLVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFGLPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLVALLVGLSLVIGDLLRQIPLAVLFGIFLYMGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKVRTLRMHLFTALQLLCLALLWAVMSTAASLAFPFILILTVPLRMVVLTRIFTEREMKCLDANEAEPVFDEREGVDEYNEMPMPV", "length": 1231, "header": "tr|I3L6Z1-1|I3L6Z1_PIG Isoform 1 of Anion exchange protein OS=Sus scrofa OX=9823 GN=SLC4A2 PE=3 SV=3 CANONICAL=I3L6Z1-1" }, "isoforms": [ { "isoform_ac": "A0A287AI58-1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1/entry#A0A287AI58-1", "sequence": { "sequence": "MSSAPRRPALGADSFRTPEPESLGPVTPGFPEQEEDELHRTLGVERFEEILQEAGSRGGEEPGRSYGEEDFEYHRQSSHHIHHPLSTHLPPDTRRRKTAQGSGRKPRRRPGASATGETPTIEEGEEEEDEASEAEGARALTQPSPASTPSSVQFFLQEDEGTDRKAETTSPSPPPPVPHQEAAPRATNGAQTGAPVEEVAAVASGTAGGDDGGASGRPLTKAQPGHRSYNLQERRRIGSMTGVEQALLPRVPTDESEAQTLATADLDLMKSHRFEDVPGVRRHLVRKNAKGSAQSGREGREPGPTPRARPRAPHKPHEVFVELNELLLDKNQEPQWRETARWIKFEEDVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAHQVVEQMVISDQIKAEDRANVLRALLLKHSHPSDEKDFSFPRNISAGSLGSLLGHHHGQGAESDPHVTEPLIGGIPETRLEVERERELPPPAPPAGITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLLGPSSANMDYHEIGRSISTLMSDKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQRQMLKKREEQGRLLPAGAGLEPKSAQDKALLQMVEAAGAVEDDPLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCLAAVIFIYFAALSPAITFGGLLGEKTHDLIGVSELIMSTALQGVIFCLLGAQPLLVIGFSGPLLVFEEAFFSFCTSNNLEYLVGRVWIGFWLVLLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETFYKLVKIFQEHPLHGCSVSNSSEADSGENATWARAAATTQPGNGSSAGPAGPSGQGRPRGQPNTALLSLVLMAGTFFIAFFLRKFKNSRFFPGRVRRVIGDFGVPIAILIMVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVINPLGENSPFPAWMMVASLLPAVLVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFGLPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLVALLVGLSLVIGDLLRQIPLAVLFGIFLYMGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKVRPGSQEPHASAPSWSVWVTLQPPTCPLWPATLQPVQTRLWFGPSVCTCSRPCSCSAWPCSGPSCPRPPPWPSPSSSSSRCRCAWSCSPASSPSGR", "length": 1252, "header": "tr|A0A287AI58-1|I3L6Z1_PIG Computationally mapped isoform of Anion exchange protein OS=Sus scrofa OX=9823 GN=SLC4A2 PE=3 SV=1 CANONICAL=I3L6Z1-1" }, "locus": { "chromosome": "18", "start_pos": 6162775, "end_pos": 6149804, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061847.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061847.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043681.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043681.2" } ] } }, { "isoform_ac": "A0A287AMX1-1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1/entry#A0A287AMX1-1", "sequence": { "sequence": "MTQPEPESLGPVTPGFPEQEEDELHRTLGVERFEEILQEAGSRGGEEPGRSYGEEDFEYHRQSSHHIHHPLSTHLPPDTRRRKTAQGSGRKPRRRPGASATGETPTIEEGEEEEDEASEAEGARALTQPSPASTPSSVQFFLQEDEGTDRKAETTSPSPPPPVPHQEAAPRATNGAQTGAPVEEVAAVASGTAGGDDGGASGRPLTKAQPGHRSYNLQERRRIGSMTGVEQALLPRVPTDESEAQTLATADLDLMKSHRFEDVPGVRRHLVRKNAKGSAQSGREGREPGPTPRARPRAPHKPHEVFVELNELLLDKNQEPQWRETARWIKFEEDVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAHQVVEQMVISDQIKAEDRANVLRALLLKHSHPSDEKDFSFPRNISAGSLGSLLGHHHGQGAESDPHVTEPLIGGIPETRLEVERERELPPPAPPAGITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLLGPSSANMDYHEIGRSISTLMSDKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQRQMLKKREEQGRLLPAGAGLEPKSAQDKALLQMVEAAGAVEDDPLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCLAAVIFIYFAALSPAITFGGLLGEKTHDLIGVSELIMSTALQGVIFCLLGAQPLLVIGFSGPLLVFEEAFFSFCTSNNLEYLVGRVWIGFWLVLLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETFYKLVKIFQEHPLHGCSVSNSSEADSGENATWARAAATTQPGNGSSAGPAGPSGQGRPRGQPNTALLSLVLMAGTFFIAFFLRKFKNSRFFPGRVRRVIGDFGVPIAILIMVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVINPLGENSPFPAWMMVASLLPAVLVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFGLPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLVALLVGLSLVIGDLLRQIPLAVLFGIFLYMGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKVRTLRMHLFTALQLLCLALLWAVMSTAASLAFPFILILTVPLRMVVLTRIFTEREMKCLDANEAEPVFDEREGVDEYNEMPMPV", "length": 1226, "header": "tr|A0A287AMX1-1|I3L6Z1_PIG Computationally mapped isoform of Anion exchange protein OS=Sus scrofa OX=9823 GN=SLC4A2 PE=3 SV=2 CANONICAL=I3L6Z1-1" }, "locus": { "chromosome": "18", "start_pos": 6161600, "end_pos": 6149621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047205.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047205.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045252.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045252.2" } ] } }, { "isoform_ac": "I3L6Z1-1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1/entry#I3L6Z1-1", "sequence": { "sequence": "MDFLLRPQPEPESLGPVTPGFPEQEEDELHRTLGVERFEEILQEAGSRGGEEPGRSYGEEDFEYHRQSSHHIHHPLSTHLPPDTRRRKTAQGSGRKPRRRPGASATGETPTIEEGEEEEDEASEAEGARALTQPSPASTPSSVQFFLQEDEGTDRKAETTSPSPPPPVPHQEAAPRATNGAQTGAPVEEVAAVASGTAGGDDGGASGRPLTKAQPGHRSYNLQERRRIGSMTGVEQALLPRVPTDESEAQTLATADLDLMKSHRFEDVPGVRRHLVRKNAKGSAQSGREGREPGPTPRARPRAPHKPHEVFVELNELLLDKNQEPQWRETARWIKFEEDVEEETERWGKPHVASLSFRSLLELRRTLAHGAVLLDLDQQTLPGVAHQVVEQMVISDQIKAEDRANVLRALLLKHSHPSDEKDFSFPRNISAGSLGSLLGHHHGQGAESDPHVTEPLIGGIPETRLEVERERELPPPAPPAGITRSKSKHELKLLEKIPENAEATVVLVGCVEFLSRPTMAFVRLREAVELDAVLEVPVPVRFLFLLLGPSSANMDYHEIGRSISTLMSDKQFHEAAYLADEREDLLTAINAFLDCSVVLPPSEVQGEELLRSVAHFQRQMLKKREEQGRLLPAGAGLEPKSAQDKALLQMVEAAGAVEDDPLRRTGRPFGGLIRDVRRRYPHYLSDFRDALDPQCLAAVIFIYFAALSPAITFGGLLGEKTHDLIGVSELIMSTALQGVIFCLLGAQPLLVIGFSGPLLVFEEAFFSFCTSNNLEYLVGRVWIGFWLVLLALLMVALEGSFLVRFVSRFTQEIFAFLISLIFIYETFYKLVKIFQEHPLHGCSVSNSSEADSGENATWARAAATTQPGNGSSAGPAGPSGQGRPRGQPNTALLSLVLMAGTFFIAFFLRKFKNSRFFPGRVRRVIGDFGVPIAILIMVLVDYSIEDTYTQKLSVPSGFSVTAPEKRGWVINPLGENSPFPAWMMVASLLPAVLVFILIFMETQITTLIISKKERMLQKGSGFHLDLLLIVAMGGICALFGLPWLAAATVRSVTHANALTVMSKAVAPGDKPKIQEVKEQRVTGLLVALLVGLSLVIGDLLRQIPLAVLFGIFLYMGVTSLNGIQFYERLHLLLMPPKHHPDVTYVKKVRTLRMHLFTALQLLCLALLWAVMSTAASLAFPFILILTVPLRMVVLTRIFTEREMKCLDANEAEPVFDEREGVDEYNEMPMPV", "length": 1231, "header": "tr|I3L6Z1-1|I3L6Z1_PIG Isoform 1 of Anion exchange protein OS=Sus scrofa OX=9823 GN=SLC4A2 PE=3 SV=3 CANONICAL=I3L6Z1-1" }, "locus": { "chromosome": "18", "start_pos": 6162114, "end_pos": 6149621, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027395.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027395.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019793.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019793.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 139, "start_aa": "Thr", "end_pos": 139, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr139", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 296, "start_aa": "Thr", "end_pos": 296, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr296", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AI58", "url": "https://www.uniprot.org/uniprotkb/A0A287AI58" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:397203", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397203", "resource": "KEGG Pathway" }, { "id": "R-SSC-425381", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-425381", "resource": "Reactome", "description": "Bicarbonate transporters" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "osteoclast differentiation", "id": "GO:0030316", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030316", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" }, { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" }, { "name": "bicarbonate transport", "id": "GO:0015701", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015701", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" }, { "name": "regulation of intracellular pH", "id": "GO:0051453", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051453", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" }, { "name": "symporter activity", "id": "GO:0015293", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015293", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" }, { "name": "chloride:bicarbonate antiporter activity", "id": "GO:0140900", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140900", "evidence": [ { "database": "UniProtKB", "id": "I3L6Z1", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 428, "end_pos": 430, "annotation": "n_glycosylation_sequon" }, { "start_pos": 846, "end_pos": 848, "annotation": "n_glycosylation_sequon" }, { "start_pos": 855, "end_pos": 857, "annotation": "n_glycosylation_sequon" }, { "start_pos": 869, "end_pos": 871, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "72363", "name": "", "equation": "hydrogencarbonate(in) + chloride(out) = hydrogencarbonate(out) + chloride(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "72363", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/72363" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L6Z1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1231, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L6Z1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L6Z1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L6Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" }, { "id": "PF07565", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07565" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Band 3 cytoplasmic", "eco_id": "ECO_0000259", "start_pos": 308, "end_pos": 605, "start_aa": "His", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L6Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6Z1" }, { "id": "PF00955", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00955" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Bicarbonate transporter-like transmembrane", "eco_id": "ECO_0000259", "start_pos": 667, "end_pos": 1210, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 139, 296 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 428, "end_pos": 430 }, { "start_pos": 846, "end_pos": 848 }, { "start_pos": 855, "end_pos": 857 }, { "start_pos": 869, "end_pos": 871 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRH2-1", "uniprot_ac": "F1SRH2", "uniprot_id": "F1SRH2_PIG", "mass": { "chemical_mass": 111416.0, "monoisotopic_mass": 111416.0 }, "refseq": { "ac": "XP_013853483", "name": "anoctamin-4 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853483" }, "gene_names": [ { "name": "ANO4", "type": "recommended", "evidence": [ { "id": "F1SRH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRH2" } ] }, { "name": "ANO4", "type": "synonym", "evidence": [ { "id": "XP_013853483", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853483" } ] } ], "protein_names": [ { "name": "Anoctamin", "type": "recommended", "evidence": [ { "id": "F1SRH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRH2/entry#names_and_taxonomy" } ] }, { "name": "anoctamin-4 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_013853483", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853483" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRH2", "url": "https://www.uniprot.org/uniprotkb/F1SRH2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANO4", "url": "https://www.uniprot.org/uniprotkb/F1SRH2", "locus": { "chromosome": "5", "start_pos": 83052958, "end_pos": 83489433, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000873", "url": "https://www.ensembl.org/id/ENSSSCG00000000873" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000873", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000873", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525519", "url": "https://www.ncbi.nlm.nih.gov/gene/100525519", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007632", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007632", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SQAFHPL", "url": "https://omabrowser.org/oma/group/SQAFHPL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12308", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12308", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12308:SF28", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12308:SF28", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04547", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04547", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16178", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16178", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2672351", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013853483", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853483", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AL54", "url": "https://www.uniprot.org/uniprotkb/A0A287AL54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AL54-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBL8", "url": "https://www.uniprot.org/uniprotkb/A0A287BBL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRH2", "url": "https://www.uniprot.org/uniprotkb/F1SRH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEASSSGITNGKTKVFHPEGGVDLQGYQLDMQILPDGPKSDVDFSEILNAIQEMAKDVNILFDELEAVNSPCKDDDSLLHPGNLTSTSDDASRLEAGGETIPEKNKSNGLYFRDGKCRIDYILVYRKSNPQTEKREVFERNIRAEGLQMEKESSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIHNKDTFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIRTHGAVNHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVITLDHCQVSKEVCQATDIIMCPVCDKYCPFMRLSDSCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFADKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGRFTGHPGAYLRLINRWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYPLIQNWWTRRKVRQEHGPERKISFPQWEKDYTLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPESDGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKERKERKKNGKAHHNEWP", "length": 955, "header": "tr|F1SRH2-1|F1SRH2_PIG Isoform 1 of Anoctamin OS=Sus scrofa OX=9823 GN=ANO4 PE=3 SV=5 CANONICAL=F1SRH2-1" }, "isoforms": [ { "isoform_ac": "A0A287AL54-1", "url": "https://www.uniprot.org/uniprotkb/F1SRH2/entry#A0A287AL54-1", "sequence": { "sequence": "MASLTAYDKDISSGSYNLSSATTGSYYSCVSQITIGYDVAGPVAIGLTHWKNPYAQGRPTLPSDLPLFVSKDAGIPVHHWSLTRKTELATPLSCPASLSITPVPSYSSSSQETLSQDTTGLSLSIHGAEKRLQIHQRRSVASRPGSRRRLPVVRHSSLPPGRRSIKMEASSSGITNGKTKVFHPEGGVDLQGYQLDMQILPDGPKSDVDFSEILNAIQEMAKDVNILFDELEAVNSPCKDDDSLLHPGNLTSTSDDASRLEAGGETIPEKNKSNGLYFRDGKCRIDYILVYRKSNPQTEKREVFERNIRAEGLQMEKESSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIHNKDTFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIRTHGAVNHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVITLDHCQVSKEVCQATDIIMCPVCDKYCPFMRLSDSCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFADKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGRFTGHPGAYLRLINRWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYPLIQNWWTRRKVRQEHGPERKISFPQWEKDYTLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPESDGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKERKERKKNGKAHHNEWP", "length": 1121, "header": "tr|A0A287AL54-1|F1SRH2_PIG Computationally mapped isoform of Anoctamin OS=Sus scrofa OX=9823 GN=ANO4 PE=3 SV=1 CANONICAL=F1SRH2-1" }, "locus": { "chromosome": "5", "start_pos": 83489327, "end_pos": 83056022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052853.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052853.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044634.1", "url": "https://www.ensembl.org/id/ENSSSCP00000044634.1" } ] } }, { "isoform_ac": "A0A287BBL8-1", "url": "https://www.uniprot.org/uniprotkb/F1SRH2/entry#A0A287BBL8-1", "sequence": { "sequence": "MEASSSGITNGKTKVFHPVAKDVNILFDELEAVNSPCKDDDSLLHPGNLTSTSDDASRLEAGGETIPEKNKSNGLYFRDGKCRIDYILVYRKSNPQTEKREVFERNIRAEGLQMEKESSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIHNKDTFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIRTHGAVNHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVITLDHCQVSKEVCQATDIIMCPVCDKYCPFMRLSDSCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFADKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGRFTGHPGAYLRLINRWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYPLIQNWWTRRKVRQEHGPERKISFPQWEKDYTLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPESDGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKERKERKKNGKAHHNEWP", "length": 920, "header": "tr|A0A287BBL8-1|F1SRH2_PIG Computationally mapped isoform of Anoctamin OS=Sus scrofa OX=9823 GN=ANO4 PE=3 SV=1 CANONICAL=F1SRH2-1" }, "locus": { "chromosome": "5", "start_pos": 83290990, "end_pos": 83056022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065611.1", "url": "https://www.ensembl.org/id/ENSSSCT00000065611.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053913.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053913.1" } ] } }, { "isoform_ac": "F1SRH2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRH2/entry#F1SRH2-1", "sequence": { "sequence": "MEASSSGITNGKTKVFHPEGGVDLQGYQLDMQILPDGPKSDVDFSEILNAIQEMAKDVNILFDELEAVNSPCKDDDSLLHPGNLTSTSDDASRLEAGGETIPEKNKSNGLYFRDGKCRIDYILVYRKSNPQTEKREVFERNIRAEGLQMEKESSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIHNKDTFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIRTHGAVNHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVITLDHCQVSKEVCQATDIIMCPVCDKYCPFMRLSDSCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFADKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGRFTGHPGAYLRLINRWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYPLIQNWWTRRKVRQEHGPERKISFPQWEKDYTLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPESDGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKERKERKKNGKAHHNEWP", "length": 955, "header": "tr|F1SRH2-1|F1SRH2_PIG Isoform 1 of Anoctamin OS=Sus scrofa OX=9823 GN=ANO4 PE=3 SV=5 CANONICAL=F1SRH2-1" }, "locus": { "chromosome": "5", "start_pos": 83290990, "end_pos": 83056022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000956.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000956.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000936.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000936.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL54", "url": "https://www.uniprot.org/uniprotkb/A0A287AL54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2672351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "resource": "Reactome", "description": "Stimuli-sensing channels" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZNA1-1", "protein_name": "Anoctamin", "gene_name": "Ano4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEASSSGITNGKNKVFHAEGGVDLQNHQLDMQTLSDGPKSDVDFSEILNAIQEMAKDVNIFFDELEAVNSPCKDDDSLLHPGNLTSTSEDTSRLEAGGEKVRERNKSNGLYFRDGKCRIDYILVYRKSNPQTEKREVFERNIRAEGLQMEKESSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIHNKDTFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIKTHGAVNHRHLLYECWASWSVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVTTLDHCQVSKEVCQATDIIMCPVCDKYCPFMRLSDSCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFTDKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGRFTGHPGAYLRLINRWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYPLIQNWWTRRKVRQEHGTERKINFPQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPESDGSEFSGTPLKYCRYRDYRDPPHSLAPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKERKERKKNGKAHHNEWP", "length": 955 }, "evidence": [ { "id": "F1SRH2", "url": "https://omabrowser.org/oma/group/F1SRH2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q32M45-1", "protein_name": "Anoctamin-4", "gene_name": "ANO4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEASSSGITNGKTKVFHPEGGVDLQGYQLDMQILPDGPKSDVDFSEILNAIQEMAKDVNILFDELEAVSSPCKDDDSLLHPGNLTSTSDDASRLEAGGETVPERNKSNGLYFRDGKCRIDYILVYRKSNPQTEKREVFERNIRAEGLQMEKESSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIHNKETFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIRTHGAENHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVTTLDHSQVSKEVCQATDIIMCPVCDKYCPFMRLSDSCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFTDKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGRFTGHPGAYLRLINRWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYPLIQNWWTRRKVRQEHGPERKISFPQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPESDGSEFSGTPLKYCRYRDYRDPPHSLVPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKERKERKKNGKAHHNEWP", "length": 955 }, "evidence": [ { "id": "F1SRH2", "url": "https://omabrowser.org/oma/group/F1SRH2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C5H1-1", "protein_name": "Anoctamin-4", "gene_name": "Ano4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEASSSGITNGKNKVFHAEGGLDLQSHQLDMQILPDGPKSDVDFSEILNAIQEMAKDVNILFDELEAVNSPCKDDDSLLHPGNLTSTSEDTSRLEAGGETVRERNKSNGLYFRDGKCRIDYILVYRKSNPQTEKREVFERNIRAEGLQMEKESSLINSDIIFVKLHAPWEVLGRYAEQMNVRMPFRRKIYYLPRRYKFMSRIDKQISRFRRWLPKKPMRLDKETLPDLEENDCYTAPFSQQRIHHFIIHNKDTFFNNATRSRIVHHILQRIKYEEGKNKIGLNRLLTNGSYEAAFPLHEGSYRSKNSIKTHGAVNHRHLLYECWASWGVWYKYQPLDLVRRYFGEKIGLYFAWLGWYTGMLFPAAFIGLFVFLYGVTTLDHCQVSKEVCQATDIIMCPVCDKYCPFMRLSDSCVYAKVTHLFDNGATVFFAVFMAVWATVFLEFWKRRRAVIAYDWDLIDWEEEEEEIRPQFEAKYSKKERMNPISGKPEPYQAFTDKCSRLIVSASGIFFMICVVIAAVFGIVIYRVVTVSTFAAFKWALIRNNSQVATTGTAVCINFCIIMLLNVLYEKVALLLTNLEQPRTESEWENSFTLKMFLFQFVNLNSSTFYIAFFLGRFTGHPGAYLRLINRWRLEECHPSGCLIDLCMQMGIIMVLKQTWNNFMELGYPLIQNWWTRRKVRQEHGTERKINFPQWEKDYNLQPMNAYGLFDEYLEMILQFGFTTIFVAAFPLAPLLALLNNIIEIRLDAYKFVTQWRRPLASRAKDIGIWYGILEGIGILSVITNAFVIAITSDFIPRLVYAYKYGPCAGQGEAGQKCMVGYVNASLSVFRISDFENRSEPESDGSEFSGTPLKYCRYRDYRDPPHSLAPYGYTLQFWHVLAARLAFIIVFEHLVFCIKHLISYLIPDLPKDLRDRMRREKYLIQEMMYEAELERLQKERKERKKNGKAHHNEWP", "length": 955 }, "evidence": [ { "id": "F1SRH2", "url": "https://omabrowser.org/oma/group/F1SRH2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRH2", "url": "https://www.uniprot.org/uniprotkb/F1SRH2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SRH2", "url": "https://www.uniprot.org/uniprotkb/F1SRH2" } ], "pmid": "" }, { "name": "intracellularly calcium-gated chloride channel activity", "id": "GO:0005229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005229", "evidence": [ { "database": "UniProtKB", "id": "F1SRH2", "url": "https://www.uniprot.org/uniprotkb/F1SRH2" } ], "pmid": "" }, { "name": "phospholipid scramblase activity", "id": "GO:0017128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017128", "evidence": [ { "database": "UniProtKB", "id": "F1SRH2", "url": "https://www.uniprot.org/uniprotkb/F1SRH2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "phospholipid translocation", "id": "GO:0045332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045332", "evidence": [ { "database": "UniProtKB", "id": "F1SRH2", "url": "https://www.uniprot.org/uniprotkb/F1SRH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 544, "end_pos": 546, "annotation": "n_glycosylation_sequon" }, { "start_pos": 605, "end_pos": 607, "annotation": "n_glycosylation_sequon" }, { "start_pos": 824, "end_pos": 826, "annotation": "n_glycosylation_sequon" }, { "start_pos": 837, "end_pos": 839, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRH2" }, { "id": "PF16178", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Anoctamin dimerisation", "eco_id": "ECO_0000259", "start_pos": 111, "end_pos": 336, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRH2" }, { "id": "PF04547", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04547" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Anoctamin transmembrane", "eco_id": "ECO_0000259", "start_pos": 339, "end_pos": 920, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 }, { "start_pos": 257, "end_pos": 259 }, { "start_pos": 288, "end_pos": 290 }, { "start_pos": 544, "end_pos": 546 }, { "start_pos": 605, "end_pos": 607 }, { "start_pos": 824, "end_pos": 826 }, { "start_pos": 837, "end_pos": 839 }, { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5Y9-1", "uniprot_ac": "I3L5Y9", "uniprot_id": "I3L5Y9_PIG", "mass": { "chemical_mass": 53356.0, "monoisotopic_mass": 53356.0 }, "refseq": { "ac": "XP_020942205", "name": "synaptotagmin-17 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942205" }, "gene_names": [ { "name": "SYT17", "type": "recommended", "evidence": [ { "id": "I3L5Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ] }, { "name": "SYT17", "type": "synonym", "evidence": [ { "id": "XP_020942205", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942205" } ] } ], "protein_names": [ { "name": "Synaptotagmin-17", "type": "recommended", "evidence": [ { "id": "I3L5Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9/entry#names_and_taxonomy" } ] }, { "name": "Synaptotagmin XVII", "type": "synonym", "evidence": [ { "id": "I3L5Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9/entry#names_and_taxonomy" } ] }, { "name": "synaptotagmin-17 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020942205", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942205" } ] } ], "function": [ { "annotation": "Plays a role in dendrite formation by melanocytes.", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9#function" }, { "database": "UniProtKB", "id": "ARBA00057478", "url": "https://www.uniprot.org/uniprotkb/ARBA00057478#function" }, { "database": "UniProtKB", "id": "A0A287B306", "url": "https://www.uniprot.org/uniprotkb/A0A287B306#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SYT17", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9", "locus": { "chromosome": "3", "start_pos": 26548657, "end_pos": 26447342, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022200", "url": "https://www.ensembl.org/id/ENSSSCG00000022200" } ] } } ], "crossref": [ { "id": "I3L5Y9", "url": "https://alphafold.ebi.ac.uk/entry/I3L5Y9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022200", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022200", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03589", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03589", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08390", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08390", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08410", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08410", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513981", "url": "https://www.ncbi.nlm.nih.gov/gene/100513981", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033988", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033988", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513981", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513981", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B306", "url": "https://www.orthodb.org/?gene=A0A287B306", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10024", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10024", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10024:SF348", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10024:SF348", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942205", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942205", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ARP3", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ARP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ARP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B306", "url": "https://www.uniprot.org/uniprotkb/A0A287B306", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B306-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B306-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5Y9-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEPLNEGFLSRISDLLLCRWTCRHCCQKCYESSCCQSSEDEVEILGPFPAQTPPWLLASRSSDKDGDSVHTASEVPLTPRTDSPDRRCSSSDTSKSTYSLTRRISSLESRRPSSPLIDIKPIEFGVLSAKKEPIQPSVLRRTYTPDDYFRKFEPRLYSLDANSDDVDFLTDAEILSKYQLGMLHFSTQYDLLHNQLTVRVIEARDLPPPISHDGARQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVLDFDKFSRHCVIGKVAVPLCEVDLVKGGHWWKALIPSSQNEVELGELLLSLNYLPSAGRLNVDVIRAKQLLQTDVSQGSDPFVKIQLVHGLKLVKTKKTSFLRGTIDPFYNESFSFKVPQEELENASLVFTVFGHNMKSSNDFIGRIVIGQYSSGASESNHWRRMLNAHRTAVEQWHSLRSRAECDRVSPASLEVT", "length": 470, "header": "tr|I3L5Y9-1|I3L5Y9_PIG Isoform 1 of Synaptotagmin-17 OS=Sus scrofa OX=9823 GN=SYT17 PE=3 SV=3 CANONICAL=I3L5Y9-1" }, "isoforms": [ { "isoform_ac": "A0A287ARP3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9/entry#A0A287ARP3-1", "sequence": { "sequence": "MLEPLNEGFLSRISDLLLCRWTCRHCCQKCYESSCCQSSEDEVEILGPFPAQTPPWLLASRSSDKDGDSVHTASEVPLTPRTDSPDRRCSSSDTSKSTYSLTRRISSLESRRPSSPLIDIKPIEFGVLSAKKEPIQPSVLRRTYTPDDYFRKFEPRLYSLDANSDDVDFLTDAEILSKYQLGMLHFSTQYDLLHNQLTVRVIEARDLPPPISHDGARQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVLDFDKFSRHCVIGKVAVPLCEVDLVKGGHWWKALIPSSQNEVELGELLLSLNYLPSAGRLNVDVIRAKQLLQTDVSQGSDPFVKIQLVHGLKLVKTKKTSFLRGTIDPFYNESFSFKVPQEELENASLVFTGPRMQKWGLWVTALLNLLSAQAFPQTDIKISPAVPELPQASLCPLFWMEFKGHCYRFFPLNKTWAEADFYCSEFSIGRKSAKLASIHSWEENVFVYDLVNSCVPGIPADIWTGLHDHRQEGQFEWTDGSSYDYSYWDGNQPDDGVHADPEEEDCVQIWYRPSSALRSWNDNTCSQKFPFVCKVSALTIH", "length": 594, "header": "tr|A0A287ARP3-1|I3L5Y9_PIG Computationally mapped isoform of Synaptotagmin-17 OS=Sus scrofa OX=9823 GN=SYT17 PE=3 SV=2 CANONICAL=I3L5Y9-1" }, "locus": { "chromosome": "3", "start_pos": 26548249, "end_pos": 26451558, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054404.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054404.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046528.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046528.3" } ] } }, { "isoform_ac": "A0A287B306-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9/entry#A0A287B306-1", "sequence": { "sequence": "MAYIQLEPLNEGFLSRISDLLLCRWTCRHCCQKCYESSCCQSSEDEVEILGPFPAQTPPWLLASRSSDKDGDSVHTASEVPLTPRTDSPDRRCSSSDTSKSTYSLTRRISSLESRRPSSPLIDIKPIEFGVLSAKKEPIQPSVLRRTYTPDDYFRKFEPRLYSLDANSDDVDFLTDAEILSKYQLGMLHFSTQYDLLHNQLTVRVIEARDLPPPISHDGARQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVLDFDKFSRHCVIGKVAVPLCEVDLVKGGHWWKALIPSSQNEVELGELLLSLNYLPSAGRLNVDVIRAKQLLQTDVSQGSDPFVKIQLVHGLKLVKTKKTSFLRGTIDPFYNESFSFKVPQEELENASLVFTVFGHNMKSSNDFIGRIVIGQYSSGASESNHWRRMLNAHRTAVEQWHSLRSRAECDRVSPASLEVT", "length": 474, "header": "tr|A0A287B306-1|I3L5Y9_PIG Computationally mapped isoform of Synaptotagmin-17 OS=Sus scrofa OX=9823 GN=SYT17 PE=3 SV=3 CANONICAL=I3L5Y9-1" }, "locus": { "chromosome": "3", "start_pos": 26523387, "end_pos": 26447721, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051152.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051152.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050645.3", "url": "https://www.ensembl.org/id/ENSSSCP00000050645.3" } ] } }, { "isoform_ac": "I3L5Y9-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9/entry#I3L5Y9-1", "sequence": { "sequence": "MLEPLNEGFLSRISDLLLCRWTCRHCCQKCYESSCCQSSEDEVEILGPFPAQTPPWLLASRSSDKDGDSVHTASEVPLTPRTDSPDRRCSSSDTSKSTYSLTRRISSLESRRPSSPLIDIKPIEFGVLSAKKEPIQPSVLRRTYTPDDYFRKFEPRLYSLDANSDDVDFLTDAEILSKYQLGMLHFSTQYDLLHNQLTVRVIEARDLPPPISHDGARQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVLDFDKFSRHCVIGKVAVPLCEVDLVKGGHWWKALIPSSQNEVELGELLLSLNYLPSAGRLNVDVIRAKQLLQTDVSQGSDPFVKIQLVHGLKLVKTKKTSFLRGTIDPFYNESFSFKVPQEELENASLVFTVFGHNMKSSNDFIGRIVIGQYSSGASESNHWRRMLNAHRTAVEQWHSLRSRAECDRVSPASLEVT", "length": 470, "header": "tr|I3L5Y9-1|I3L5Y9_PIG Isoform 1 of Synaptotagmin-17 OS=Sus scrofa OX=9823 GN=SYT17 PE=3 SV=3 CANONICAL=I3L5Y9-1" }, "locus": { "chromosome": "3", "start_pos": 26523387, "end_pos": 26451558, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031474.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031474.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019440.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019440.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B306", "url": "https://www.uniprot.org/uniprotkb/A0A287B306" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513981", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513981", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "exocytic vesicle", "id": "GO:0070382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070382", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "positive regulation of dendrite extension", "id": "GO:1903861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903861", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "regulation of calcium ion-dependent exocytosis", "id": "GO:0017158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017158", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "regulation of postsynaptic neurotransmitter receptor internalization", "id": "GO:0099149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099149", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "SNARE binding", "id": "GO:0000149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000149", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" }, { "name": "calcium ion sensor activity", "id": "GO:0061891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061891", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y9", "url": "https://www.uniprot.org/uniprotkb/I3L5Y9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 385, "end_pos": 387, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5Y9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 470, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5Y9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5Y9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 385, "end_pos": 387 }, { "start_pos": 399, "end_pos": 401 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQT3-1", "uniprot_ac": "F1SQT3", "uniprot_id": "F1SQT3_PIG", "mass": { "chemical_mass": 39889.0, "monoisotopic_mass": 39889.0 }, "refseq": {}, "gene_names": [ { "name": "SLC25A3", "type": "recommended", "evidence": [ { "id": "F1SQT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQT3" } ] } ], "protein_names": [ { "name": "Solute carrier family 25 member 3", "type": "recommended", "evidence": [ { "id": "F1SQT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQT3/entry#names_and_taxonomy" } ] }, { "name": "Phosphate carrier protein, mitochondrial", "type": "synonym", "evidence": [ { "id": "F1SQT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQT3/entry#names_and_taxonomy" } ] }, { "name": "Phosphate transport protein", "type": "synonym", "evidence": [ { "id": "F1SQT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQT3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Inorganic ion transporter that transports phosphate or copper ions across the mitochondrial inner membrane into the matrix compartment. Mediates proton-coupled symport of phosphate ions necessary for mitochondrial oxidative phosphorylation of ADP to ATP. Transports copper ions probably in the form of anionic copper(I) complexes to maintain mitochondrial matrix copper pool and to supply copper for cytochrome C oxidase complex assembly. May also play a role in regulation of the mitochondrial permeability transition pore (mPTP).", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLJ5#function" }, { "database": "UniProtKB", "id": "ARBA00045773", "url": "https://www.uniprot.org/uniprotkb/ARBA00045773#function" }, { "database": "UniProtKB", "id": "A0A287BGP7", "url": "https://www.uniprot.org/uniprotkb/A0A287BGP7#function" }, { "database": "UniProtKB", "id": "A0A5G2Q9K8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9K8#function" }, { "database": "UniProtKB", "id": "A0A5G2QMB3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMB3#function" }, { "database": "UniProtKB", "id": "A0A287AB71", "url": "https://www.uniprot.org/uniprotkb/A0A287AB71#function" }, { "database": "UniProtKB", "id": "F1SQT3", "url": "https://www.uniprot.org/uniprotkb/F1SQT3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQT3", "url": "https://www.uniprot.org/uniprotkb/F1SQT3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC25A3", "url": "https://www.uniprot.org/uniprotkb/F1SQT3", "locus": { "chromosome": "5", "start_pos": 85284311, "end_pos": 85292328, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000886", "url": "https://www.ensembl.org/id/ENSSSCG00000000886" } ] } } ], "crossref": [ { "id": "F1SQT3", "url": "https://alphafold.ebi.ac.uk/entry/F1SQT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000886", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000886", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018108", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018108", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YKGAIWL", "url": "https://omabrowser.org/oma/group/YKGAIWL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45671", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45671", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45671:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45671:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00153", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00153", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "29939", "url": "https://www.rhea-db.org/rhea/29939", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AB71", "url": "https://www.uniprot.org/uniprotkb/A0A287AB71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AB71-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AB71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGP7", "url": "https://www.uniprot.org/uniprotkb/A0A287BGP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BGP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BGP7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9K8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9K8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9K8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMB3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQT3", "url": "https://www.uniprot.org/uniprotkb/F1SQT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSSVAHLARANPFNAPHLQLVQDGLAGPRSSPDGPPGPPRRTRNLAAAAVEEYSCEYGSMKFYALCGFGGVLSCGLHTAVVPLDLVKCRMQVDPNKYKGIFNGFSITLKEDGVRGLAKGWAPTFIGYSLQGLCKFGFYEVFKVLYSNMLGEENAYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYQEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASQVLRRLGFRGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGYTQ", "length": 360, "header": "tr|F1SQT3-1|F1SQT3_PIG Isoform 1 of Solute carrier family 25 member 3 OS=Sus scrofa OX=9823 GN=SLC25A3 PE=1 SV=2 CANONICAL=F1SQT3-1" }, "isoforms": [ { "isoform_ac": "A0A287AB71-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT3/entry#A0A287AB71-1", "sequence": { "sequence": "MFSSVAHLARANPFNAPHLQLVQDGLAGPRSSPDGPPGPPRRTRNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVCIEMTTLNISFVDPNKYKGIFNGFSITLKEDGVRGLAKGWAPTFIGYSLQGLCKFGFYEVFKVLYSNMLGEENAYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYQEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASQVLRRLGFRALCGVYCVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGYTQ", "length": 380, "header": "tr|A0A287AB71-1|F1SQT3_PIG Computationally mapped isoform of Solute carrier family 25 member 3 OS=Sus scrofa OX=9823 GN=SLC25A3 PE=1 SV=2 CANONICAL=F1SQT3-1" }, "locus": { "chromosome": "5", "start_pos": 85291970, "end_pos": 85284588, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064711.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064711.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041212.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041212.2" } ] } }, { "isoform_ac": "A0A287BGP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT3/entry#A0A287BGP7-1", "sequence": { "sequence": "MTSSRARRREEARPRWRVPSVQVTLTGLTAPFACPLTAASSPPRKMFSSVAHLARANPFNAPHLQLVQDGLAGPRSSPDGPPGPPRRTRNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPNKYKGIFNGFSITLKEDGVRGLAKGWAPTFIGYSLQGLCKFGFYEVFKVLYSNMLGEENAYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYQEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASQVLRRLGFRALCGVYCVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGYTQ", "length": 413, "header": "tr|A0A287BGP7-1|F1SQT3_PIG Computationally mapped isoform of Solute carrier family 25 member 3 OS=Sus scrofa OX=9823 GN=SLC25A3 PE=1 SV=2 CANONICAL=F1SQT3-1" }, "locus": { "chromosome": "5", "start_pos": 85292105, "end_pos": 85284588, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049040.3", "url": "https://www.ensembl.org/id/ENSSSCT00000049040.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055520.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055520.2" } ] } }, { "isoform_ac": "A0A5G2Q9K8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT3/entry#A0A5G2Q9K8-1", "sequence": { "sequence": "MTSSRARRREEARPRWRVPSVQVTLTGLTAPFACPLTAASSPPRKMFSSVAHLARANPFNAPHLQLVQDGLAGPRSSPDGPPGPPRRTRNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPNKYKGIFNGFSITLKEDGVRGLAKGWAPTFIGYSLQGLCKFGFYEVFKVLYSNMLGEENAYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYQEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASQVLRRLGFRGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGYTQ", "length": 407, "header": "tr|A0A5G2Q9K8-1|F1SQT3_PIG Computationally mapped isoform of Solute carrier family 25 member 3 OS=Sus scrofa OX=9823 GN=SLC25A3 PE=1 SV=1 CANONICAL=F1SQT3-1" }, "locus": { "chromosome": "5", "start_pos": 85292105, "end_pos": 85284588, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067942.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067942.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059998.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059998.1" } ] } }, { "isoform_ac": "A0A5G2QMB3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT3/entry#A0A5G2QMB3-1", "sequence": { "sequence": "MFSSVAHLARANPFNAPHLQLVQDGLAGPRSSPDGPPGPPRRTRNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVCIEMTTLNISFVDPNKYKGIFNGFSITLKEDGVRGLAKGWAPTFIGYSLQGLCKFGFYEVFKVLYSNMLGEENAYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYQEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGYTQ", "length": 337, "header": "tr|A0A5G2QMB3-1|F1SQT3_PIG Computationally mapped isoform of Solute carrier family 25 member 3 OS=Sus scrofa OX=9823 GN=SLC25A3 PE=1 SV=2 CANONICAL=F1SQT3-1" }, "locus": { "chromosome": "5", "start_pos": 85291970, "end_pos": 85284588, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071444.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071444.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065175.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065175.2" } ] } }, { "isoform_ac": "A0A8W4FLJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT3/entry#A0A8W4FLJ5-1", "sequence": { "sequence": "MFSSVAHLARANPFNAPHLQLVQDGLAGPRSSPDGPPGPPRRTRNLAAAAVEEYSCEYGSMKFYALCGFGGVLSCGLHTAVVPLDLVKCRMQVDPNKYKGIFNGFSITLKEDGVRGLAKGWAPTFIGYSLQGLCKFGFYEVFKVLYSNMLGEVCN", "length": 155, "header": "tr|A0A8W4FLJ5-1|F1SQT3_PIG Computationally mapped isoform of Solute carrier family 25 member 3 OS=Sus scrofa OX=9823 GN=SLC25A3 PE=1 SV=1 CANONICAL=F1SQT3-1" }, "locus": { "chromosome": "5", "start_pos": 85291970, "end_pos": 85287492, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101313.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101313.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080082.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080082.1" } ] } }, { "isoform_ac": "F1SQT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQT3/entry#F1SQT3-1", "sequence": { "sequence": "MFSSVAHLARANPFNAPHLQLVQDGLAGPRSSPDGPPGPPRRTRNLAAAAVEEYSCEYGSMKFYALCGFGGVLSCGLHTAVVPLDLVKCRMQVDPNKYKGIFNGFSITLKEDGVRGLAKGWAPTFIGYSLQGLCKFGFYEVFKVLYSNMLGEENAYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYQEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASQVLRRLGFRGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGYTQ", "length": 360, "header": "tr|F1SQT3-1|F1SQT3_PIG Isoform 1 of Solute carrier family 25 member 3 OS=Sus scrofa OX=9823 GN=SLC25A3 PE=1 SV=2 CANONICAL=F1SQT3-1" }, "locus": { "chromosome": "5", "start_pos": 85291970, "end_pos": 85284588, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000970.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000970.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000949.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000949.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BGP7", "url": "https://www.uniprot.org/uniprotkb/A0A287BGP7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MF72-1", "protein_name": "Solute carrier family 25 member 3", "gene_name": "Slc25a3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFSSVAHLARANPFNAPHLQLVHDGLSGPRSPPGPPQRSRHLAAAAVEEYSCEFGSMKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKALYSNMLGEENTYLWRTSLYLAASASAEFFADIALAPMEATKVRIQTQPGYANTLREAVPKMYKEEGLNAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECTKAEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSTASQVLQRLGFRGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPASLKKKLGLAE", "length": 357 }, "evidence": [ { "id": "F1SQT3", "url": "https://omabrowser.org/oma/group/F1SQT3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P12234-1", "protein_name": "Solute carrier family 25 member 3", "gene_name": "SLC25A3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MYSSVVHLARANPFNAPHLQLVHDGLAGPRSDPAGPPGPPRRSRNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPQKYKSIFNGFSVTLKEDGFRGLAKGWAPTFIGYSLQGLCKFGFYEVFKVLYSNMLGEENAYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASEVLKRLGFRGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGYTQ", "length": 362 }, "evidence": [ { "id": "F1SQT3", "url": "https://omabrowser.org/oma/group/F1SQT3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q00325-1", "protein_name": "Solute carrier family 25 member 3", "gene_name": "SLC25A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFSSVAHLARANPFNTPHLQLVHDGLGDLRSSSPGPTGQPRRPRNLAAAAVEEQYSCDYGSGRFFILCGLGGIISCGTTHTALVPLDLVKCRMQVDPQKYKGIFNGFSVTLKEDGVRGLAKGWAPTFLGYSMQGLCKFGFYEVFKVLYSNMLGEENTYLWRTSLYLAASASAEFFADIALAPMEAAKVRIQTQPGYANTLRDAAPKMYKEEGLKAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASLVLKRLGFKGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGLTQ", "length": 362 }, "evidence": [ { "id": "F1SQT3", "url": "https://omabrowser.org/oma/group/F1SQT3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VEM8-1", "protein_name": "Solute carrier family 25 member 3", "gene_name": "Slc25a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSSVAHLARANPFNAPHLQLVHDGLSGPRSPPAPPRRSRHLAAAAVEEYSCEFGSMKYYALCGFGGVLSCGLTHTAVVPLDLVKCRMQVDPQKYKGIFNGFSITLKEDGVRGLAKGWAPTLIGYSMQGLCKFGFYEVFKALYSNILGEENTYLWRTSLYLASSASAEFFADIALAPMEAAKVRIQTQPGYANTLREAVPKMYKEEGLNAFYKGVAPLWMRQIPYTMMKFACFERTVEALYKFVVPKPRSECTKAEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSTASQVLQRLGFRGVWKGLFARIIMIGTLTALQWFIYDSVKVYFRLPRPPPPEMPESLKKKLGLTE", "length": 357 }, "evidence": [ { "id": "F1SQT3", "url": "https://omabrowser.org/oma/group/F1SQT3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SQT3", "url": "https://www.uniprot.org/uniprotkb/F1SQT3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "F1SQT3", "url": "https://www.uniprot.org/uniprotkb/F1SQT3" } ], "pmid": "" }, { "name": "phosphate transmembrane transporter activity", "id": "GO:0005315", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005315", "evidence": [ { "database": "UniProtKB", "id": "F1SQT3", "url": "https://www.uniprot.org/uniprotkb/F1SQT3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "phosphate ion transmembrane transport", "id": "GO:0035435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035435", "evidence": [ { "database": "UniProtKB", "id": "F1SQT3", "url": "https://www.uniprot.org/uniprotkb/F1SQT3" } ], "pmid": "" }, { "name": "mitochondrial phosphate ion transmembrane transport", "id": "GO:1990547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990547", "evidence": [ { "database": "UniProtKB", "id": "F1SQT3", "url": "https://www.uniprot.org/uniprotkb/F1SQT3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29939", "name": "", "equation": "phosphate(in) + H(+)(in) = phosphate(out) + H(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29939", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29939" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQT3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 360, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQT3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQT3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQA3-1", "uniprot_ac": "F1SQA3", "uniprot_id": "F1SQA3_PIG", "mass": { "chemical_mass": 37849.0, "monoisotopic_mass": 37849.0 }, "refseq": { "ac": "XP_003132419", "name": "phosphatidate cytidylyltransferase, mitochondrial isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132419" }, "gene_names": [ { "name": "TAMM41", "type": "recommended", "evidence": [ { "id": "F1SQA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQA3" } ] }, { "name": "TAMM41", "type": "synonym", "evidence": [ { "id": "XP_003132419", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132419" } ] } ], "protein_names": [ { "name": "Phosphatidate cytidylyltransferase, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SQA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQA3/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.41", "type": "synonym", "evidence": [ { "id": "F1SQA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQA3/entry#names_and_taxonomy" } ] }, { "name": "CDP-diacylglycerol synthase", "type": "synonym", "evidence": [ { "id": "F1SQA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQA3/entry#names_and_taxonomy" } ] }, { "name": "Mitochondrial translocator assembly and maintenance protein 41 homolog", "type": "synonym", "evidence": [ { "id": "F1SQA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQA3/entry#names_and_taxonomy" } ] }, { "name": "phosphatidate cytidylyltransferase, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003132419", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132419" } ] } ], "function": [ { "annotation": "Catalyzes the conversion of phosphatidic acid (PA) to CDP-diacylglycerol (CDP-DAG), an essential intermediate in the synthesis of phosphatidylglycerol, cardiolipin and phosphatidylinositol.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UJI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJI1#function" }, { "database": "UniProtKB", "id": "PIRNR028840", "url": "https://www.uniprot.org/uniprotkb/PIRNR028840#function" }, { "database": "UniProtKB", "id": "ARBA00003203", "url": "https://www.uniprot.org/uniprotkb/ARBA00003203#function" }, { "database": "UniProtKB", "id": "A0A5G2R6W5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6W5#function" }, { "database": "UniProtKB", "id": "F1SQA3", "url": "https://www.uniprot.org/uniprotkb/F1SQA3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQA3", "url": "https://www.uniprot.org/uniprotkb/F1SQA3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TAMM41", "url": "https://www.uniprot.org/uniprotkb/F1SQA3", "locus": { "chromosome": "13", "start_pos": 67922480, "end_pos": 67983526, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011578", "url": "https://www.ensembl.org/id/ENSSSCG00000011578" } ] } } ], "crossref": [ { "id": "F1SQA3", "url": "https://alphafold.ebi.ac.uk/entry/F1SQA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011578", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011578", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524902", "url": "https://www.ncbi.nlm.nih.gov/gene/100524902", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SQA3", "url": "https://www.orthodb.org/?gene=F1SQA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13619", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13619", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13619:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13619:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09139", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09139", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132419", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132419", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16229", "url": "https://www.rhea-db.org/rhea/16229", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1UJI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UJI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6W5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6W5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6W5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6W5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQA3", "url": "https://www.uniprot.org/uniprotkb/F1SQA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQA3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVEWHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIEDLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLEIAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLEIDKSPEGQFTQLLTLPKTLQQQINHIMDLPGKNRDVEETLLQVAHDPDCGDVVRLGALTNWTWRKCWPALSNRETFQHETEHERHFHCWPEEVSDL", "length": 332, "header": "tr|F1SQA3-1|F1SQA3_PIG Isoform 1 of Phosphatidate cytidylyltransferase, mitochondrial OS=Sus scrofa OX=9823 GN=TAMM41 PE=1 SV=2 CANONICAL=F1SQA3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UJI1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQA3/entry#A0A4X1UJI1-1", "sequence": { "sequence": "MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVEWHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIEDLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLEIAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLEIDKSPEGQFTQLLTLPKTLQQQINHIMDLPGKNRDVEETLLQVAHDPDCGDVVRLGLKKSVIYSSLKLHKMWKGWLRKTI", "length": 316, "header": "tr|A0A4X1UJI1-1|F1SQA3_PIG Computationally mapped isoform of Phosphatidate cytidylyltransferase, mitochondrial OS=Sus scrofa OX=9823 GN=TAMM41 PE=1 SV=1 CANONICAL=F1SQA3-1" }, "locus": { "chromosome": "13", "start_pos": 67983235, "end_pos": 67922538, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000070724.2", "url": "https://www.ensembl.org/id/ENSSSCT00000070724.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067412.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067412.1" } ] } }, { "isoform_ac": "A0A5G2R6W5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQA3/entry#A0A5G2R6W5-1", "sequence": { "sequence": "MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVEWHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIEDLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLEIAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLEIDKSPEGQFTQLLTLPKTLQQQINHIMDLPGKNRDVEETLLQVAHDPDCGDVVRLGALTNWTWRKCWPALSNRETFQHETEHERHFHCW", "length": 325, "header": "tr|A0A5G2R6W5-1|F1SQA3_PIG Computationally mapped isoform of Phosphatidate cytidylyltransferase, mitochondrial OS=Sus scrofa OX=9823 GN=TAMM41 PE=1 SV=2 CANONICAL=F1SQA3-1" }, "locus": { "chromosome": "13", "start_pos": 67983235, "end_pos": 67934545, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077970.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077970.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072075.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072075.2" } ] } }, { "isoform_ac": "F1SQA3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQA3/entry#F1SQA3-1", "sequence": { "sequence": "MALQALQSSGVTFRKILSHFPEELSLAFAYGSGVYRQAGPSSDQKKAMLDFVFTVDDPVEWHSKNLKKNWNHYSFLKIFGPRIISTVQNNYGAGVYYNPLIMCDGRLIKYGVISTSTLIEDLLNWNNLYIAGRLQKPVKIVAMNENVALRSALDKNLKSAVTAAFLMLPESFSEEDLFLEIAGLSYSGDFRMVVGEDRMKVLNIVKPNIAHFRELYGSILQENPQVVYKIQQGSLEIDKSPEGQFTQLLTLPKTLQQQINHIMDLPGKNRDVEETLLQVAHDPDCGDVVRLGALTNWTWRKCWPALSNRETFQHETEHERHFHCWPEEVSDL", "length": 332, "header": "tr|F1SQA3-1|F1SQA3_PIG Isoform 1 of Phosphatidate cytidylyltransferase, mitochondrial OS=Sus scrofa OX=9823 GN=TAMM41 PE=1 SV=2 CANONICAL=F1SQA3-1" }, "locus": { "chromosome": "13", "start_pos": 67983235, "end_pos": 67922590, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012670.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012670.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012337.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012337.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UJI1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UJI1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SQA3", "url": "https://www.uniprot.org/uniprotkb/F1SQA3" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SQA3", "url": "https://www.uniprot.org/uniprotkb/F1SQA3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidate cytidylyltransferase activity", "id": "GO:0004605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004605", "evidence": [ { "database": "UniProtKB", "id": "F1SQA3", "url": "https://www.uniprot.org/uniprotkb/F1SQA3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "CDP-diacylglycerol biosynthetic process", "id": "GO:0016024", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016024", "evidence": [ { "database": "UniProtKB", "id": "F1SQA3", "url": "https://www.uniprot.org/uniprotkb/F1SQA3" } ], "pmid": "" }, { "name": "cardiolipin biosynthetic process", "id": "GO:0032049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032049", "evidence": [ { "database": "UniProtKB", "id": "F1SQA3", "url": "https://www.uniprot.org/uniprotkb/F1SQA3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16229", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phosphate + CTP + H(+) = a CDP-1,2-diacyl-sn-glycerol + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16229", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16229" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQA3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 332, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQA3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQA3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 296, "end_pos": 298 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSL6-1", "uniprot_ac": "F1SSL6", "uniprot_id": "F1SSL6_PIG", "mass": { "chemical_mass": 28433.0, "monoisotopic_mass": 28433.0 }, "refseq": { "ac": "XP_001928025", "name": "proteasome subunit alpha type-3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928025" }, "gene_names": [ { "name": "PSMA3", "type": "recommended", "evidence": [ { "id": "F1SSL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ] }, { "name": "PSMA3", "type": "synonym", "evidence": [ { "id": "XP_001928025", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928025" } ] } ], "protein_names": [ { "name": "Proteasome subunit alpha type", "type": "recommended", "evidence": [ { "id": "F1SSL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSL6/entry#names_and_taxonomy" } ] }, { "name": "proteasome subunit alpha type-3", "type": "synonym", "evidence": [ { "id": "XP_001928025", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928025" } ] } ], "function": [ { "annotation": "The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH. The proteasome has an ATP-dependent proteolytic activity.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R2Y1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2Y1#function" }, { "database": "UniProtKB", "id": "ARBA00002000", "url": "https://www.uniprot.org/uniprotkb/ARBA00002000#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMA3", "url": "https://www.uniprot.org/uniprotkb/F1SSL6", "locus": { "chromosome": "1", "start_pos": 187372193, "end_pos": 187343507, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005072", "url": "https://www.ensembl.org/id/ENSSSCG00000005072" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005072", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005072", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03751", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03751", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154408", "url": "https://www.ncbi.nlm.nih.gov/gene/100154408", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000426", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000426", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154408", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154408", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RVSMYMH", "url": "https://omabrowser.org/oma/group/RVSMYMH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSL6", "url": "https://www.orthodb.org/?gene=F1SSL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10584", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10584", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169091", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1234176", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1236978", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174084", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174154", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174184", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-187577", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-349425", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-350562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-382556", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4608870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641258", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5358346", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607761", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607764", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610780", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610785", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5632684", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5658442", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5668541", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5676590", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5687128", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68867", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68949", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69017", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69601", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75815", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8852276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854050", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939902", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8941858", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948751", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9020702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9755511", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9766229", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9931269", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9932298", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928025", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928025", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R2Y1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R2Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R2Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0UCW9", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UCW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0UCW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UCW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGEITKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM", "length": 255, "header": "tr|F1SSL6-1|F1SSL6_PIG Isoform 1 of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA3 PE=1 SV=1 CANONICAL=F1SSL6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R2Y1-1", "url": "https://www.uniprot.org/uniprotkb/F1SSL6/entry#A0A5G2R2Y1-1", "sequence": { "sequence": "MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGEITKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM", "length": 233, "header": "tr|A0A5G2R2Y1-1|F1SSL6_PIG Computationally mapped isoform of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA3 PE=1 SV=1 CANONICAL=F1SSL6-1" }, "locus": { "chromosome": "1", "start_pos": 187370478, "end_pos": 187343594, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086186.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086186.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068557.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068557.1" } ] } }, { "isoform_ac": "A0A8D0UCW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSL6/entry#A0A8D0UCW9-1", "sequence": { "sequence": "MNSNVVTLRVTTVAQQHQEHLESAGTKYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQVIHIYCLNFCYNIIFIIYIVHDEVKDKAFELELSWVGEITKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM", "length": 275, "header": "tr|A0A8D0UCW9-1|F1SSL6_PIG Computationally mapped isoform of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA3 PE=1 SV=1 CANONICAL=F1SSL6-1" }, "locus": { "chromosome": "1", "start_pos": 187370478, "end_pos": 187346647, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073643.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073643.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066263.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066263.1" } ] } }, { "isoform_ac": "F1SSL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSL6/entry#F1SSL6-1", "sequence": { "sequence": "MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGEITKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM", "length": 255, "header": "tr|F1SSL6-1|F1SSL6_PIG Isoform 1 of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA3 PE=1 SV=1 CANONICAL=F1SSL6-1" }, "locus": { "chromosome": "1", "start_pos": 187370478, "end_pos": 187343594, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005589.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005589.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005449.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005449.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0UCW9", "url": "https://www.uniprot.org/uniprotkb/A0A8D0UCW9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154408", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154408", "resource": "KEGG Pathway" }, { "id": "R-SSC-1169091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "resource": "Reactome", "description": "Activation of NF-kappaB in B cells" }, { "id": "R-SSC-1234176", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "resource": "Reactome", "description": "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha" }, { "id": "R-SSC-1236978", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "resource": "Reactome", "description": "Cross-presentation of soluble exogenous antigens (endosomes)" }, { "id": "R-SSC-174084", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "resource": "Reactome", "description": "Autodegradation of Cdh1 by Cdh1:APC/C" }, { "id": "R-SSC-174154", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of Securin" }, { "id": "R-SSC-174178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "resource": "Reactome", "description": "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1" }, { "id": "R-SSC-174184", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "resource": "Reactome", "description": "Cdc20:Phospho-APC/C mediated degradation of Cyclin A" }, { "id": "R-SSC-187577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "resource": "Reactome", "description": "SCF(Skp2)-mediated degradation of p27/p21" }, { "id": "R-SSC-202424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "resource": "Reactome", "description": "Downstream TCR signaling" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-349425", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "resource": "Reactome", "description": "Autodegradation of the E3 ubiquitin ligase COP1" }, { "id": "R-SSC-350562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "resource": "Reactome", "description": "Regulation of ornithine decarboxylase (ODC)" }, { "id": "R-SSC-382556", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "resource": "Reactome", "description": "ABC-family protein mediated transport" }, { "id": "R-SSC-450408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "resource": "Reactome", "description": "AUF1 (hnRNP D0) binds and destabilizes mRNA" }, { "id": "R-SSC-4608870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "resource": "Reactome", "description": "Asymmetric localization of PCP proteins" }, { "id": "R-SSC-4641257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "resource": "Reactome", "description": "Degradation of AXIN" }, { "id": "R-SSC-4641258", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "resource": "Reactome", "description": "Degradation of DVL" }, { "id": "R-SSC-5358346", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "resource": "Reactome", "description": "Hedgehog ligand biogenesis" }, { "id": "R-SSC-5607761", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "resource": "Reactome", "description": "Dectin-1 mediated noncanonical NF-kB signaling" }, { "id": "R-SSC-5607764", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "resource": "Reactome", "description": "CLEC7A (Dectin-1) signaling" }, { "id": "R-SSC-5610780", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "resource": "Reactome", "description": "Degradation of GLI1 by the proteasome" }, { "id": "R-SSC-5610785", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "resource": "Reactome", "description": "GLI3 is processed to GLI3R by the proteasome" }, { "id": "R-SSC-5632684", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "resource": "Reactome", "description": "Hedgehog 'on' state" }, { "id": "R-SSC-5658442", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "resource": "Reactome", "description": "Regulation of RAS by GAPs" }, { "id": "R-SSC-5668541", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "resource": "Reactome", "description": "TNFR2 non-canonical NF-kB pathway" }, { "id": "R-SSC-5676590", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "resource": "Reactome", "description": "NIK-->noncanonical NF-kB signaling" }, { "id": "R-SSC-5687128", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "resource": "Reactome", "description": "MAPK6/MAPK4 signaling" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-68867", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "resource": "Reactome", "description": "Assembly of the pre-replicative complex" }, { "id": "R-SSC-68949", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "resource": "Reactome", "description": "Orc1 removal from chromatin" }, { "id": "R-SSC-69017", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "resource": "Reactome", "description": "CDK-mediated phosphorylation and removal of Cdc6" }, { "id": "R-SSC-69481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "resource": "Reactome", "description": "G2/M Checkpoints" }, { "id": "R-SSC-69601", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "resource": "Reactome", "description": "Ubiquitin-Mediated Degradation of Phosphorylated Cdc25A" }, { "id": "R-SSC-75815", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "resource": "Reactome", "description": "Ubiquitin-dependent degradation of Cyclin D" }, { "id": "R-SSC-8852276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "resource": "Reactome", "description": "The role of GTSE1 in G2/M progression after G2 checkpoint" }, { "id": "R-SSC-8854050", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "resource": "Reactome", "description": "FBXL7 down-regulates AURKA during mitotic entry and in early mitosis" }, { "id": "R-SSC-8939236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "resource": "Reactome", "description": "RUNX1 regulates transcription of genes involved in differentiation of HSCs" }, { "id": "R-SSC-8939902", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "resource": "Reactome", "description": "Regulation of RUNX2 expression and activity" }, { "id": "R-SSC-8941858", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "resource": "Reactome", "description": "Regulation of RUNX3 expression and activity" }, { "id": "R-SSC-8948751", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "resource": "Reactome", "description": "Regulation of PTEN stability and activity" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-9020702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "resource": "Reactome", "description": "Interleukin-1 signaling" }, { "id": "R-SSC-9755511", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "resource": "Reactome", "description": "KEAP1-NFE2L2 pathway" }, { "id": "R-SSC-9766229", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "resource": "Reactome", "description": "Degradation of CDH1" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" }, { "id": "R-SSC-9931269", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "resource": "Reactome", "description": "AMPK-induced ERAD and lysosome mediated degradation of PD-L1(CD274)" }, { "id": "R-SSC-9932298", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "resource": "Reactome", "description": "Degradation of CRY and PER proteins" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7GW96-1", "protein_name": "Proteasome subunit alpha type", "gene_name": "Psma3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYVDPLHAKWRPGEGFGSPGTGITDGSKPSCEFWEPNPYPLQQKQYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSTNDGPQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCCDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM", "length": 293 }, "evidence": [ { "id": "F1SSL6", "url": "https://omabrowser.org/oma/group/F1SSL6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O23715-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "PAG1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQKVPDDLLEEAKTAAKTALEEMDAD", "length": 249 }, "evidence": [ { "id": "F1SSL6", "url": "https://omabrowser.org/oma/group/F1SSL6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O70435-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "Psma3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM", "length": 255 }, "evidence": [ { "id": "F1SSL6", "url": "https://omabrowser.org/oma/group/F1SSL6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P18422-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "Psma3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEIVPKDVREEAEKYAKESLKEEDESDDDNM", "length": 255 }, "evidence": [ { "id": "F1SSL6", "url": "https://omabrowser.org/oma/group/F1SSL6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21242-1", "protein_name": "Probable proteasome subunit alpha type-7", "gene_name": "PRE10", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGDIHLE", "length": 288 }, "evidence": [ { "id": "F1SSL6", "url": "https://omabrowser.org/oma/group/F1SSL6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25788-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "PSMA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEEDESDDDNM", "length": 255 }, "evidence": [ { "id": "F1SSL6", "url": "https://omabrowser.org/oma/group/F1SSL6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q27563-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "psmA3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSVGSGYDLYVSTYSPDGKLFQVDYANKAVENSGTLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEKIKFSEMTCREAIKEVSRIIYSVHDEVKDKDFELELGWISTETNNVHQIVPKELHDEAEAYAKQSLEDANM", "length": 248 }, "evidence": [ { "id": "F1SSL6", "url": "https://omabrowser.org/oma/group/F1SSL6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q58DU5-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "PSMA3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSIGTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGEITNGRHEIVPKDVREEAEKYAKESLKEEDESDDDNM", "length": 255 }, "evidence": [ { "id": "F1SSL6", "url": "https://omabrowser.org/oma/group/F1SSL6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9V5C6-1", "protein_name": "Proteasome subunit alpha type-3", "gene_name": "Prosalpha7", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEKLKMDMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGRVTGGLHLINPSELTEKARKAGDAANKDEDSDNETH", "length": 253 }, "evidence": [ { "id": "F1SSL6", "url": "https://omabrowser.org/oma/group/F1SSL6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ], "pmid": "" }, { "name": "proteasome core complex, alpha-subunit complex", "id": "GO:0019773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019773", "evidence": [ { "database": "UniProtKB", "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "response to oxidative stress", "id": "GO:0006979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006979", "evidence": [ { "database": "UniProtKB", "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ], "pmid": "" }, { "name": "regulation of proteasomal protein catabolic process", "id": "GO:0061136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061136", "evidence": [ { "database": "UniProtKB", "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "F1SSL6", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSL6" }, { "id": "PS00388", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00388" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Proteasome alpha-type subunits", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 30, "start_aa": "Tyr", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PZ23-1", "uniprot_ac": "F6PZ23", "uniprot_id": "F6PZ23_PIG", "mass": { "chemical_mass": 41596.0, "monoisotopic_mass": 41596.0 }, "refseq": {}, "gene_names": [ { "name": "ST6GALNAC4", "type": "recommended", "evidence": [ { "id": "F6PZ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PZ23" } ] } ], "protein_names": [ { "name": "alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3-N-acetylgalactosaminide6-alpha-sialyltransferase", "type": "recommended", "evidence": [ { "id": "F6PZ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PZ23/entry#names_and_taxonomy" } ] }, { "name": "2.4.3.7", "type": "synonym", "evidence": [ { "id": "F6PZ23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PZ23/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PZ23", "url": "https://www.uniprot.org/uniprotkb/F6PZ23" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ST6GALNAC4", "url": "https://www.uniprot.org/uniprotkb/F6PZ23", "locus": { "chromosome": "1", "start_pos": 268391855, "end_pos": 268402407, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005628", "url": "https://www.ensembl.org/id/ENSSSCG00000005628" } ] } } ], "crossref": [ { "id": "F6PZ23", "url": "https://alphafold.ebi.ac.uk/entry/F6PZ23", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23977", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23977", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45906", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45906", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45906:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45906:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00777", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00777", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-4085001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4085001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-977068", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977068", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "41968", "url": "https://www.rhea-db.org/rhea/41968", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "65280", "url": "https://www.rhea-db.org/rhea/65280", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "65284", "url": "https://www.rhea-db.org/rhea/65284", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8D0Z4X2", "url": "https://www.uniprot.org/uniprotkb/A0A8D0Z4X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0Z4X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0Z4X2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PZ23", "url": "https://www.uniprot.org/uniprotkb/F6PZ23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PZ23-1", "url": "https://www.uniprot.org/uniprotkb/F6PZ23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPPMRIIRLISGPCALSLAAQRKSWFTETVDSADALETTEPGCALPLPIPHRSLPGSQGPPFPPHNHCLPQGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYSSVPDGKPLVREPCRSCAVVSSSGQMLGSGLGAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNRRQSGSFLSTGWFTMILALELCQEIVVYGMVSDSYCREKSHPSVPYHYFEKGRLDECQMYLAHERAPRSAHRFITEKAVFSRWAKKRPIVFAHPSWKTQ", "length": 370, "header": "tr|F6PZ23-1|F6PZ23_PIG Isoform 1 of alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3-N-acetylgalactosaminide6-alpha-sialyltransferase OS=Sus scrofa OX=9823 GN=ST6GALNAC4 PE=3 SV=1 CANONICAL=F6PZ23-1" }, "isoforms": [ { "isoform_ac": "A0A8D0Z4X2-1", "url": "https://www.uniprot.org/uniprotkb/F6PZ23/entry#A0A8D0Z4X2-1", "sequence": { "sequence": "MCSEPGSPEEVLGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYSSVPDGKPLVREPCRSCAVVSSSGQMLGSGLGAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNRRQSGSFLSTGWFTMILALELCQEIVVYGMVSDSYCREKSHPSVPYHYFEKGRLDECQMYLAHERAPRSAHRFITEKAVFSRWAKKRPIVFAHPSWKTQ", "length": 310, "header": "tr|A0A8D0Z4X2-1|F6PZ23_PIG Computationally mapped isoform of alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3-N-acetylgalactosaminide6-alpha-sialyltransferase OS=Sus scrofa OX=9823 GN=ST6GALNAC4 PE=3 SV=1 CANONICAL=F6PZ23-1" }, "locus": { "chromosome": "1", "start_pos": 268400516, "end_pos": 268392356, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053676.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053676.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058758.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058758.2" } ] } }, { "isoform_ac": "F6PZ23-1", "url": "https://www.uniprot.org/uniprotkb/F6PZ23/entry#F6PZ23-1", "sequence": { "sequence": "MKPPMRIIRLISGPCALSLAAQRKSWFTETVDSADALETTEPGCALPLPIPHRSLPGSQGPPFPPHNHCLPQGRLLFIILCSLGFSGFYILLCCWACLPFCLALCLDPHLSINSRPTVPGPLHFSGYSSVPDGKPLVREPCRSCAVVSSSGQMLGSGLGAEIDGAECVLRMNQAPTVGFEADVGRRSTLRVISHTSVPLLLRNYSHYFQQARDTLYVVWGQGRHMDRELGGRTYRALLQLTRMYPGLQVYTFTERMMAYCDQVFQDETGKNRRQSGSFLSTGWFTMILALELCQEIVVYGMVSDSYCREKSHPSVPYHYFEKGRLDECQMYLAHERAPRSAHRFITEKAVFSRWAKKRPIVFAHPSWKTQ", "length": 370, "header": "tr|F6PZ23-1|F6PZ23_PIG Isoform 1 of alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3-N-acetylgalactosaminide6-alpha-sialyltransferase OS=Sus scrofa OX=9823 GN=ST6GALNAC4 PE=3 SV=1 CANONICAL=F6PZ23-1" }, "locus": { "chromosome": "1", "start_pos": 268401784, "end_pos": 268392356, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006188.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006188.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006029.4", "url": "https://www.ensembl.org/id/ENSSSCP00000006029.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0Z4X2", "url": "https://www.uniprot.org/uniprotkb/A0A8D0Z4X2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-4085001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4085001", "resource": "Reactome", "description": "Sialic acid metabolism" }, { "id": "R-SSC-977068", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977068", "resource": "Reactome", "description": "Termination of O-glycan biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F6PZ23", "url": "https://www.uniprot.org/uniprotkb/F6PZ23" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F6PZ23", "url": "https://www.uniprot.org/uniprotkb/F6PZ23" } ], "pmid": "" }, { "name": "glycoprotein biosynthetic process", "id": "GO:0009101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009101", "evidence": [ { "database": "UniProtKB", "id": "F6PZ23", "url": "https://www.uniprot.org/uniprotkb/F6PZ23" } ], "pmid": "" }, { "name": "oligosaccharide metabolic process", "id": "GO:0009311", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009311", "evidence": [ { "database": "UniProtKB", "id": "F6PZ23", "url": "https://www.uniprot.org/uniprotkb/F6PZ23" } ], "pmid": "" }, { "name": "ganglioside biosynthetic process", "id": "GO:0001574", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001574", "evidence": [ { "database": "UniProtKB", "id": "F6PZ23", "url": "https://www.uniprot.org/uniprotkb/F6PZ23" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,3-N-acetyl-galactosaminide 6-alpha-sialyltransferase activity", "id": "GO:0047290", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047290", "evidence": [ { "database": "UniProtKB", "id": "F6PZ23", "url": "https://www.uniprot.org/uniprotkb/F6PZ23" } ], "pmid": "" }, { "name": "alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity", "id": "GO:0001665", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001665", "evidence": [ { "database": "UniProtKB", "id": "F6PZ23", "url": "https://www.uniprot.org/uniprotkb/F6PZ23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 203, "end_pos": 205, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "41968", "name": "", "equation": "a ganglioside GM1b (d18:1(4E)) + CMP-N-acetyl-beta-neuraminate = a ganglioside GD1alpha (d18:1(4E)) + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41968", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41968" } ] }, { "id": "65280", "name": "", "equation": "3-O-[alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->3)-alpha-D-GalNAc]-L-Ser-[protein] + CMP-N-acetyl-beta-neuraminate = a 3-O-{alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->3)-[alpha-Neu5Ac-(2->6)]-alpha-D-GalNAc}-L-seryl-[protein] + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "65280", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/65280" } ] }, { "id": "65284", "name": "", "equation": "3-O-[alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->3)-alpha-D-GalNAc]-L-Thr-[protein] + CMP-N-acetyl-beta-neuraminate = a 3-O-{alpha-Neu5Ac-(2->3)-beta-D-Gal-(1->3)-[alpha-Neu5Ac-(2->6)]-alpha-D-GalNAc}-L-threonyl-[protein] + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "65284", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/65284" } ] }, { "id": "R-SSC-4084980", "name": "ST6GALNAC1-6 transfer Neu5Ac to terminal GalNAc (alpha-2,6 link)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [ "R-ALL-4086301" ], "output_participant_list": [ "R-ALL-4086341" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-4084980", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4084980" } ] }, { "id": "R-SSC-981809", "name": "ST6GALNAC3/4 transfers sialic acid to the sialyl T antigen to form the disialyl T antigen", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi lumen, Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-981809", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-981809" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-4086301", "participant_name": "GalNAc-R [Golgi lumen]", "crossref": [ { "id": "21507", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-4086341", "participant_name": "Neu5Ac-2,6-GalNAc-R [Golgi lumen]", "crossref": [ { "id": "62634", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00030VN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00041IL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00063MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00520NI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00743WU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G00745CN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00803TF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01040ZV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01155GN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01203BZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01287FH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01325OU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01376HR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01445XB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01546PE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01614ZM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01657UH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01665LU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02244ID", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02387FV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02473HY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G02860LZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02915XR", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G03172PR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03325JN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03542TR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03819IX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03834RX", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G03998SF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04267XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04289KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04483QG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04513DL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04548YV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04706FE", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G04743RS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G04895YD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G05106AU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05235KE", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G05374TU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05412ZS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05490PJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05570RS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05665LK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05694XS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G05774PX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05785JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05786ES", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G06635WE", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G06729UK", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G06990MN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07078LK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07100DF", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G07293JT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07689ET", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07937GC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08246QI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G08371CD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08465VN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G09108HO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G09441IP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G09480OP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G09682KX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G09778JK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G09859LE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10258MC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G10290UA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10300QZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G10325PN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10739QG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G10835DD", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G11061VC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11263YZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11343WR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11482NO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G11589YK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11704PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12121CY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12190QO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12389NM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12574EB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12900GB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12902SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13125OG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G13305DT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G13458KB", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G13985TC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G14068WV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G14250HG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14296RM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14442NU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14533ZS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14868UU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15208OO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15577KP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15807NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15882EZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15952WX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G16370GQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16456ZV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G16578NV", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G17034UD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17039ZC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17077YF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17096JA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17172ZR", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G17326TY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17456TE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17810KS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17964DY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G17964XN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G18174LR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18201QM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18676RO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G18707MU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18841NY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18871OL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19173OJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19749DC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19933AN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19954YX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20061RO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20176YB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20308RQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20435PF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20482JP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20826OM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20854YP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20857JS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G21573GX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21927IY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G22222BH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G22629JM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22803YZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22927MQ", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G23355WV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23416CI", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G23419VW", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G23654OQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23870PO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24168XN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24218XI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24375OF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24569EC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24875YE", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G25439DD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25459WN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25571LJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25705WX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25726HS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25778VW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25780HH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25835MT", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G25835YC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26229QI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26341TZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26519FA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26651YZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26702BZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26718PT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26806EA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27192WV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27297CO", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G27562JG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27603XJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27726WH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G27868TR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G28599FB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G28694FA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28960YA", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G29025YS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29301RL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29326OK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29386CS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29489PN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29849JL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29988CY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29988NK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30110UW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30542PN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G30832XJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G31493NN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31948FR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32818XV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32948PW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G32981ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G33012HL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33593EQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33740YL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G34118NA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G34123VN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34801BK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34815RA", "type": "N-linked", "subtype": "Alditol-reduced" }, { "glytoucan_ac": "G34824ZD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35347WX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G35437KG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35438GZ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G35481RN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G35675LO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G35842UG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36042WR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G36123IU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36171JA", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G36253YP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36573BV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36588NK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36712XC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G36761DZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37185HI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G37200YF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G37222EI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37885HZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G38229RW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G38301SX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38351JR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38371WW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G38684VZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39100MY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39247UK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39417RW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39540XG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G39570CO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G40138ED", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G40188OO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40270LS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40560KZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40714SE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40909HG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G41227XH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G41232YR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G41444DX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41498BE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41732ZR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42042EG", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G42065BH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42138LH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G42233WE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G42779AL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G42993UG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43039PK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43221GX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43346PX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G43514NA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43592AC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44152CO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G44212UE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44711FK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44772RK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44880NI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44907FO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45111VK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45120SG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45219EG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45264AM", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G45362KT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45494FB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45516VR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45690OD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45747TC", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G45752UQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46060BG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46108US", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G46420ZV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46711XU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46743AZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46772BG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46799MV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G46823CW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46974QL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47058RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47180UC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47391NN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47522FK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47538PA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47573PO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47909VC", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G47921ZO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G48056PC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G48081MJ", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G48367ZH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48638TB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G48714ZW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G48768RT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49077EU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49197SK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49502SC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49527BY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49604IR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49642CM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50241DS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50254UQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50943ZX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G51509AZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51722JR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52154FO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52273YQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52460PC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52759XA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52814NP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52902AR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53034PL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53208AY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53362BF", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G53675DS", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G53810EV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53933HU", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G54042WO", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G54095RB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54370BN", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G54411WK", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G54434IR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54650UF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54953IZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55041IW", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G55126WZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55177GW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55223IP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55402UT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G56077PT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56202KK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56404GH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56408DR", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G56657VE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56682BC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56882GN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57007FO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57084IU", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G57741SS", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G58006UM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58489WT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58576YF", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58599KY", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G58695FX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58768FH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58808TX", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G58932AD", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G58972ZH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59149SL", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G59280CO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59306VK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59392WK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59595AB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G59752BW", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G60138JZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G60255MW", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G60532CM", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G60598XD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G60833BB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G60955ML", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61049GY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G61367OF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G62146JX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62608YY", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G62680DG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62866HT", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G63110FE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63136MB", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G63240YA", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G63329SO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G63334FZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G63342TJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63717SU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64102JR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64252WT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64553RA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64610UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64613CO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64712UU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64851ON", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64881OC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64931FF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64965PX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64981YW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65191ST", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65225VD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65285QO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65348IZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65447BW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65499ZI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65790DQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G66123IE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66162WI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66205CG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66418NO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G66576RC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66699QG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67326LW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67451GS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67624GB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68038KC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68062BK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68373VW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68560PY", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G68820TX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G68964XC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G69233PF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G69440CJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G69627PQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G69704YD", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G70444FA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70572KM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71222KY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71332MU", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G71496TN", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G71549TN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71847XW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71961AV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72260GO", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G72263DG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G72452LM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72656BW", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G72734AU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73162BZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73418FX", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G73423PD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73582RP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73707DO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73760YR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G73839CW", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G73946HM", "type": "N-linked", "subtype": "Hybrid" }, { "glytoucan_ac": "G74339LA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74679FP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74855SC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74992YO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75462ID", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G75749JP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75868SR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76097GZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76225JQ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G76910CD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77076CV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77174TF", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G77652GC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G77915WT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G77967JJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78104ML", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78315BS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78333MH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78475DU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78509TX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G78759XX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78856SO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G79372AN", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G80068SW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G80306SV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80346ZU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80479HQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G80565QS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80577OW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80738BU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81016SV", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G81358TE", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G81520BE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82639GQ", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G82905PO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82906DM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83104JJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83140GU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83155KW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83241PZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83502DX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83567OS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83643ND", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83920DK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84071MB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84167AV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G84287MH", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G84329MX", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G84504LI", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G84906AJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84906ML", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85002XD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85079IJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85231EY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85366AQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85721WE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G85821PU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G85977BN", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G86085BW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86304WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86320XR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86480FG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86634NY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86656HK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86861MW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86871XB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G87218FV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87656FV", "type": "N-linked", "subtype": "Complex" }, { "glytoucan_ac": "G88035KQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88038KU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88089UV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88122BX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88230UV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88431RN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88449YB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88464ZX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88678EQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89230YO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89498BT", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G89941FZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G89996XH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90221FQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90238QO", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G90334GI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90402OU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90510OM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90572ER", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90901EO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90926WR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90928ZN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90974OV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G91143IL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91144VS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G91684MM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G91807FJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92302BV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92318PO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92327HS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92332WW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92345KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92399PD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92501LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93470LV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93626XM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G93791KT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G93802CF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G94085VM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94352TY", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G94627QP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G95658PH", "type": "N-linked", "subtype": "Triantennary" }, { "glytoucan_ac": "G95715FI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95739WE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96081GH", "type": "N-linked", "subtype": "Tetraantennary" }, { "glytoucan_ac": "G96425TB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96464PC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96653KP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97082HJ", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G97083VO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97123YR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97160DA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97263AV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97515HE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97644GG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97832IV", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G97863GV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97972BA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98549NZ", "type": "N-linked", "subtype": "Core-fucosylated" }, { "glytoucan_ac": "G99365LP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99501KJ", "type": "N-linked", "subtype": "Other" }, { "glytoucan_ac": "G99527BL", "type": "O-linked", "subtype": "Core 1" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 203, "end_pos": 205 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SU66-1", "uniprot_ac": "F1SU66", "uniprot_id": "F1SU66_PIG", "mass": { "chemical_mass": 48130.0, "monoisotopic_mass": 48130.0 }, "refseq": { "ac": "XP_003124867", "name": "28S ribosomal protein S5, mitochondrial isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124867" }, "gene_names": [ { "name": "MRPS5", "type": "recommended", "evidence": [ { "id": "F1SU66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ] }, { "name": "MRPS5", "type": "synonym", "evidence": [ { "id": "XP_003124867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124867" } ] } ], "protein_names": [ { "name": "Small ribosomal subunit protein uS5m", "type": "recommended", "evidence": [ { "id": "F1SU66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU66/entry#names_and_taxonomy" } ] }, { "name": "28S ribosomal protein S5, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003124867", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124867" } ] }, { "name": "28S ribosomal protein S5, mitochondrial", "type": "synonym", "evidence": [ { "id": "F1SU66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU66/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRPS5", "url": "https://www.uniprot.org/uniprotkb/F1SU66", "locus": { "chromosome": "3", "start_pos": 46169807, "end_pos": 46137509, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008113", "url": "https://www.ensembl.org/id/ENSSSCG00000008113" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008113", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008113", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521262", "url": "https://www.ncbi.nlm.nih.gov/gene/100521262", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "5AJ3", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5AJ3&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5AJ4&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GAW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GAZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GAZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR000851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005324", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005324", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018192", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018192", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521262", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521262", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LICHRAI", "url": "https://omabrowser.org/oma/group/LICHRAI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1VX29", "url": "https://www.orthodb.org/?gene=A0A4X1VX29", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SU66", "url": "https://www.orthodb.org/?gene=F1SU66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48277", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48277", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48277:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48277:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005aj3", "url": "https://www.rcsb.org/structure/pdb_00005aj3", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005aj4", "url": "https://www.rcsb.org/structure/pdb_00005aj4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gaw", "url": "https://www.rcsb.org/structure/pdb_00006gaw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gaz", "url": "https://www.rcsb.org/structure/pdb_00006gaz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydp", "url": "https://www.rcsb.org/structure/pdb_00006ydp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydw", "url": "https://www.rcsb.org/structure/pdb_00006ydw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nqh", "url": "https://www.rcsb.org/structure/pdb_00007nqh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nql", "url": "https://www.rcsb.org/structure/pdb_00007nql", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsi", "url": "https://www.rcsb.org/structure/pdb_00007nsi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsj", "url": "https://www.rcsb.org/structure/pdb_00007nsj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oin", "url": "https://www.rcsb.org/structure/pdb_00008oin", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oip", "url": "https://www.rcsb.org/structure/pdb_00008oip", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5AJ3", "url": "https://www.rcsb.org/structure/5AJ3", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.rcsb.org/structure/5AJ4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.rcsb.org/structure/6GAW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAZ", "url": "https://www.rcsb.org/structure/6GAZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.rcsb.org/structure/6YDP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.rcsb.org/structure/6YDW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.rcsb.org/structure/7NQH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.rcsb.org/structure/7NQL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.rcsb.org/structure/7NSI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.rcsb.org/structure/7NSJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.rcsb.org/structure/8OIN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIP", "url": "https://www.rcsb.org/structure/8OIP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF00333", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00333", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03719", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03719", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21251", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21251", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5389840", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5419276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9937383", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003124867", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124867", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1VX29", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VX29-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VX29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9J8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9J8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9J8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9J8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1BNB4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1BNB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1BNB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1BNB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1LU33", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LU33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1LU33-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1LU33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU66-1", "url": "https://www.uniprot.org/uniprotkb/F1SU66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAVRAAGFFPGLFGASAGNLWSRQLYLNTFPAASILTSKTFPSNGPLSPPGTRDNHHFTSLACALQTQCSISSPSNWMGQQYRSYSFFTKLTADELWKGALAESGAGARKGRGKRTKKKRRKDLNRGQIIGEGRHGFLWPGLNIPLMRNGAVQTIAQRSKEDQEKVEADMVQQREEWDRRRKMKVKRERGWSGNTWGGVSLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGKGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLKFKRTHIKMKKQPRGYGLHCHRAIMTICRLIGIKDLYAKVSGSVNMLNLTRGLFLGLSRQETHQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDITLDWEDVKAAQGMKRSVWSGLKRAAT", "length": 430, "header": "tr|F1SU66-1|F1SU66_PIG Isoform 1 of Small ribosomal subunit protein uS5m OS=Sus scrofa OX=9823 GN=MRPS5 PE=1 SV=1 CANONICAL=F1SU66-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VX29-1", "url": "https://www.uniprot.org/uniprotkb/F1SU66/entry#A0A4X1VX29-1", "sequence": { "sequence": "MGRTCQRHAEGFKSSRLTASLLWPEWGNLWSRQLYLNTFPAASILTSKTFPSNGPLSPPGTRDNHHFTSLACALQTQCSISSPSNWMGQQYRSYSFFTKLTADELWKGALAESGAGARKGRGKRTKKKRRKDLNRGQIIGEGRHGFLWPGLNIPLMRNGAVQTIAQRSKEDQEKVEADMVQQREEWDRRRKMKVKRERGWSGNTWGGVSLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGKGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLKFKRTHIKMKKQPRGYGLHCHRAIMTICRLIGIKDLYAKVSGSVNMLNLTRGLFLGLSRQETHQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDITLDWEDVKAAQGMKRSVWSGLKRAAT", "length": 437, "header": "tr|A0A4X1VX29-1|F1SU66_PIG Computationally mapped isoform of Small ribosomal subunit protein uS5m OS=Sus scrofa OX=9823 GN=MRPS5 PE=1 SV=1 CANONICAL=F1SU66-1" }, "locus": { "chromosome": "3", "start_pos": 46168052, "end_pos": 46141495, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079104.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079104.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070739.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070739.1" } ] } }, { "isoform_ac": "A0A5G2R9J8-1", "url": "https://www.uniprot.org/uniprotkb/F1SU66/entry#A0A5G2R9J8-1", "sequence": { "sequence": "MAAAVRAAGFFPGLFGASAGSRWEFLSQGLNLCCTEATRATVVRKQEIQPTRPSENSQGNLWSRQLYLNTFPAASILTSKTFPSNGPLSPPGTRDNHHFTSLACALQTQCSISSPSNWMGQQYRSYSFFTKLTADELWKGALAESGAGARKGRGKRTKKKRRKDLNRGQIIGEGRHGFLWPGLNIPLMRNGAVQTIAQRSKEDQEKVEADMVQQREEWDRRRKMKVKRERGWSGNTWGGVSLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGKGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLKFKRTHIKMKKQPRGYGLHCHRAIMTICRLIGIKDLYAKVSGSVNMLNLTRGLFLGLSRQETHQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDITLDWEDVKAAQGMKRSVWSGLKRAAT", "length": 469, "header": "tr|A0A5G2R9J8-1|F1SU66_PIG Computationally mapped isoform of Small ribosomal subunit protein uS5m OS=Sus scrofa OX=9823 GN=MRPS5 PE=1 SV=1 CANONICAL=F1SU66-1" }, "locus": { "chromosome": "3", "start_pos": 46168052, "end_pos": 46137707, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089850.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089850.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072994.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072994.1" } ] } }, { "isoform_ac": "A0A8D1BNB4-1", "url": "https://www.uniprot.org/uniprotkb/F1SU66/entry#A0A8D1BNB4-1", "sequence": { "sequence": "MVVIVRLLNASNIVLFHLPAGPLSPPGTRDNHHFTSLACALQTQCSISSPSNWMGQQYRSYSFFTKLTADELWKGALAESGAGARKGRGKRTKKKRRKDLNRGQIIGEGRHGFLWPGLNIPLMRNGAVQTIAQRSKEDQEKVEADMVQQREEWDRRRKMKVKRERGWSGNTWGGVSLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGKGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLKFKRTHIKMKKQPRGYGLHCHRAIMTICRLIGIKDLYAKVSGSVNMLNLTRGLFLGLSRQETHQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDITLDWEDVKAAQGMKRSVWSGLKRAAT", "length": 404, "header": "tr|A0A8D1BNB4-1|F1SU66_PIG Computationally mapped isoform of Small ribosomal subunit protein uS5m OS=Sus scrofa OX=9823 GN=MRPS5 PE=1 SV=1 CANONICAL=F1SU66-1" }, "locus": { "chromosome": "3", "start_pos": 46168052, "end_pos": 46144301, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079512.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079512.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062592.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062592.1" } ] } }, { "isoform_ac": "A0A8D1LU33-1", "url": "https://www.uniprot.org/uniprotkb/F1SU66/entry#A0A8D1LU33-1", "sequence": { "sequence": "MGRTCQRHAEGFKSSRLTASLLWPEWGNLWSRQLYLNTFPAASILTSKTFPSNGPLSPPGTRDNHHFTSLACALQTQCSISSPSNWMGQQYRSYSFFTKLTADELWKGALAESGAGARKGRGKRTKKKRRKDLNRGQIIGEGRHGFLWPGLNIPLMRNGAVQTIAQRSKEDQEKVEADMVQQREEWDRRRKMKVKRERGWSGNTWGGVSLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGKGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTSYGLHCHRAIMTICRLIGIKDLYAKVSGSVNMLNLTRGLFLGLSRQETHQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDITLDWEDVKAAQGMKRSVWSGLKRAAT", "length": 416, "header": "tr|A0A8D1LU33-1|F1SU66_PIG Computationally mapped isoform of Small ribosomal subunit protein uS5m OS=Sus scrofa OX=9823 GN=MRPS5 PE=1 SV=1 CANONICAL=F1SU66-1" }, "locus": { "chromosome": "3", "start_pos": 46168052, "end_pos": 46141495, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087022.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087022.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069954.2", "url": "https://www.ensembl.org/id/ENSSSCP00000069954.2" } ] } }, { "isoform_ac": "F1SU66-1", "url": "https://www.uniprot.org/uniprotkb/F1SU66/entry#F1SU66-1", "sequence": { "sequence": "MAAAVRAAGFFPGLFGASAGNLWSRQLYLNTFPAASILTSKTFPSNGPLSPPGTRDNHHFTSLACALQTQCSISSPSNWMGQQYRSYSFFTKLTADELWKGALAESGAGARKGRGKRTKKKRRKDLNRGQIIGEGRHGFLWPGLNIPLMRNGAVQTIAQRSKEDQEKVEADMVQQREEWDRRRKMKVKRERGWSGNTWGGVSLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGKGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLKFKRTHIKMKKQPRGYGLHCHRAIMTICRLIGIKDLYAKVSGSVNMLNLTRGLFLGLSRQETHQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDITLDWEDVKAAQGMKRSVWSGLKRAAT", "length": 430, "header": "tr|F1SU66-1|F1SU66_PIG Isoform 1 of Small ribosomal subunit protein uS5m OS=Sus scrofa OX=9823 GN=MRPS5 PE=1 SV=1 CANONICAL=F1SU66-1" }, "locus": { "chromosome": "3", "start_pos": 46168052, "end_pos": 46137707, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008889.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008889.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008663.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008663.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.", "journal": "Science", "date": "2015", "authors": "Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "reference": [ { "type": "PubMed", "id": "25837512", "url": "https://glygen.org/publication/PubMed/25837512" } ] }, { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. Cell", "date": "2021", "authors": "Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "reference": [ { "type": "PubMed", "id": "33878294", "url": "https://glygen.org/publication/PubMed/33878294" } ] }, { "title": "Molecular basis of translation termination at noncanonical stop codons in human mitochondria.", "journal": "Science", "date": "2023", "authors": "Saurer Martin, Leibundgut Marc, Nadimpalli Hima Priyanka, Scaiola Alain, Sch\u00f6nhut Tanja, Lee Richard G, Siira Stefan J, Rackham Oliver, Dreos Ren\u00e9, Lenar\u010di\u010d Tea, Kummer Eva, Gatfield David, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "reference": [ { "type": "PubMed", "id": "37141370", "url": "https://glygen.org/publication/PubMed/37141370" } ] } ], "pathway": [ { "id": "ssc:100521262", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521262", "resource": "KEGG Pathway" }, { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZYT2-1", "protein_name": "Small ribosomal subunit protein uS5m", "gene_name": "Mrps5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAVRAAGCLPALCSAPAGHFLSRQLSLNTFPVAATSFLAAKTAFSHGSLSPRETRHNHCLTSLSHALQTQCCISSPSNWTGQQYRPYSFFTKLTAEELWKGALAETGAGARKGRGKRTKKKKKKDLNKGQIIGEGRSGFLWPGLNVPLIKSGVVQNIGQRSKEEQQKVEADMAEQREEWDRKRKIKVKRERGWSGNTWGGVSIGPPDPGPNGETYEDFDTRILEVRNVFNMTAKEGRKKSVRVLVAVGNGNGAAGFAVGKAADRADAFRKAKNRAIHYLHYIERYEGHTIFHDISLRFKRTHIRMKKQPRGYGLRCHRAIITICRLIGIKDMYAKVNGSVNMLNLTRGLFHGLARQETHQHLADKKGLHVVEFREECGPLPIVVASPHGALSKEPEPEPEVPDTKLDWQDVKAMQGMKRSVWFNLKRSAT", "length": 432 }, "evidence": [ { "id": "F1SU66", "url": "https://omabrowser.org/oma/group/F1SU66/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3H025-1", "protein_name": "Small ribosomal subunit protein uS5m", "gene_name": "Mrps5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAAVRSACCLPALCGVPAGHFLSRQLPLKAFPAAASFLAAKTTLSYGSLSPRGTKTNHCLSSLSHALQTQCCIASPVNCMGQQNRPYSFFTKLTAEELWKGALAETGAGARKGRGKRTKRRKKKDLNKGQIIGEGRSGFLWPGLNVPLTKSGVVQTIGQRSKQEQEKVEADMIQQREDWERKRKIKVKRERGWSGSTWGGVSIGPPSQGPNGETYEDFDTRVLEVRNVFNMTAKEGRKKSVRVLVVVGNGNGAAGFAVGKAADRADALRKAKNRAIHYLHYIELYEGHTIYHDISLRFKRTQIRMKKQPRGYGLRCHRAIITICRLIGIKDMYAKVTGSMNMLNLTRGLFRGLAHQETHQHLADKKGLHVVEFREECGPLPIVVASPRGALSKEPEPEPEVPDIKLDWQEVKAMQGMKRSVWSDLKRSAT", "length": 431 }, "evidence": [ { "id": "F1SU66", "url": "https://omabrowser.org/oma/group/F1SU66/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P82675-1", "protein_name": "Small ribosomal subunit protein uS5m", "gene_name": "MRPS5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATAVRAVGCLPVLCSGTAGHLLGRQCSLNTLPAASILAWKSVLGNGHLSSLGTRDTHPYASLSRALQTQCCISSPSHLMSQQYRPYSFFTKLTADELWKGALAETGAGAKKGRGKRTKKKKRKDLNRGQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIVVASPRGPLRKDPEPEDEVPDVKLDWEDVKTAQGMKRSVWSNLKRAAT", "length": 430 }, "evidence": [ { "id": "F1SU66", "url": "https://omabrowser.org/oma/group/F1SU66/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q2KID9-1", "protein_name": "Small ribosomal subunit protein uS5m", "gene_name": "MRPS5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAAVRAAGFLPALCGASAGRLWSRQLYLNTFPTASIWALKAVPSNGPSSSAGARGRCRSTHLGPALQTQCCTPAPGNVTAQQYRSYSFFTKLTADELWKGALAETGAGARKGRGKRTKRKRRKDLNRGQIIGEGRRGFLWPGLNAPLMKSGAIQTITQRSKEEQEKVEADMVQQREEWDRKRKMKVKRERGWSGNSWGGISLGPPDPGPNGETYDDFDTRILEVRNVFNMTAKEGRKRSVRVLVAVGNGRGAAGFAIGKATERADAFRKAKNRAVHYLHYIERYEDHTIYHDISLTFKRTHIKMKKQPRGYGLRCHRAITTICRLIGIKDMYAKVSGSVNMLSLTRGLFQGLSRQETHQQLADKKSLHVVEFREECGPLPIVVASPQGALRKDPEPEDEVPDIKLDWDDVKAVQGMKRSVWSGLKRAAT", "length": 430 }, "evidence": [ { "id": "F1SU66", "url": "https://omabrowser.org/oma/group/F1SU66/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99N87-1", "protein_name": "Small ribosomal subunit protein uS5m", "gene_name": "Mrps5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAVRAAGCLPALCSLQAGHFLSRQLSLNAFPVAATSFLAVKTALSHGSLSSRETRRNHCLTSLSHVLQTQCCVSSPGNWTGQQCRPYSFFTKLTAEELWKGALAETGAGARKGRGKRTKKKKRKDLNRGQIIGEGRSGFLWPGLNVPLIKSGVVQNIGQRSKEEQQKVEATMVEQREEWDRKRKIKVKRERGWSGNTWGGVSIGPPDPGPNGETYEDFDTRILEVRNVFNMTAKEGRKKSVRVLVAVGNGNGAAGFAIGKAADRGDAFRKAKNRAIHYLHYIERYEGHTIFHDISLRFKRTQIRMKKQPRGYGLRCHRAIITICRLIGIKDMYARVTGSMNMLNLTRGLFHGLARQETHQHLADKKGLHVVEFREECGPLPIVVASPHGALSKEPEPEPEVPDTKLDWQDVKAMQGLKRSVWFNLKRPAT", "length": 432 }, "evidence": [ { "id": "F1SU66", "url": "https://omabrowser.org/oma/group/F1SU66/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial small ribosomal subunit", "id": "GO:0005763", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005763", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F1SU66", "url": "https://www.uniprot.org/uniprotkb/F1SU66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SU66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU66" }, { "id": "PS50881", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50881" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "S5 DRBM", "eco_id": "ECO_0000259", "start_pos": 218, "end_pos": 282, "start_aa": "Phe", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 230, "end_pos": 232 }, { "start_pos": 344, "end_pos": 346 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 6 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS51-1", "uniprot_ac": "F1SS51", "uniprot_id": "F1SS51_PIG", "mass": { "chemical_mass": 44405.0, "monoisotopic_mass": 44405.0 }, "refseq": { "ac": "XP_020923549", "name": "dual specificity mitogen-activated protein kinase kinase 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923549" }, "gene_names": [ { "name": "MAP2K4", "type": "recommended", "evidence": [ { "id": "F1SS51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ] }, { "name": "MAP2K4", "type": "synonym", "evidence": [ { "id": "XP_020923549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923549" } ] } ], "protein_names": [ { "name": "Dual specificity mitogen-activated protein kinase kinase 4", "type": "recommended", "evidence": [ { "id": "F1SS51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#names_and_taxonomy" } ] }, { "name": "2.7.12.2", "type": "synonym", "evidence": [ { "id": "F1SS51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#names_and_taxonomy" } ] }, { "name": "JNK-activating kinase 1", "type": "synonym", "evidence": [ { "id": "F1SS51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#names_and_taxonomy" } ] }, { "name": "MAPK/ERK kinase 4", "type": "synonym", "evidence": [ { "id": "F1SS51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#names_and_taxonomy" } ] }, { "name": "SAPK/ERK kinase 1", "type": "synonym", "evidence": [ { "id": "F1SS51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#names_and_taxonomy" } ] }, { "name": "dual specificity mitogen-activated protein kinase kinase 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020923549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923549" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAP2K4", "url": "https://www.uniprot.org/uniprotkb/F1SS51", "locus": { "chromosome": "12", "start_pos": 56516238, "end_pos": 56402075, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018016", "url": "https://www.ensembl.org/id/ENSSSCG00000018016" } ] } } ], "crossref": [ { "id": "ENSSSCG00000018016", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018016", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06616", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06616", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520100", "url": "https://www.ncbi.nlm.nih.gov/gene/100520100", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520100", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520100", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HILLEFC", "url": "https://omabrowser.org/oma/group/HILLEFC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8D1CWD0", "url": "https://www.orthodb.org/?gene=A0A8D1CWD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SS51", "url": "https://www.orthodb.org/?gene=F1SS51", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48013", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48013", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48013:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48013:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2559580", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871796", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450321", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450321", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020923549", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923549", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "10596", "url": "https://www.rhea-db.org/rhea/10596", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B4Y9", "url": "https://www.uniprot.org/uniprotkb/A0A287B4Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B4Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B4Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZR5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1CWD0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1CWD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1CWD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1CWD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9Q5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9Q5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F9Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F9Q5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS51-1", "url": "https://www.uniprot.org/uniprotkb/F1SS51-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPSPSGGGGSGGGSSSSGTPGPVGSPAPGHPAVSSMQGKRKALKLNFANPPFKSTARFTLNPNPAGVQNPHIERLRTHSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERTVEVACYVCKILDQMPATPSSPMYVD", "length": 400, "header": "tr|F1SS51-1|F1SS51_PIG Isoform 1 of Dual specificity mitogen-activated protein kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP2K4 PE=1 SV=3 CANONICAL=F1SS51-1" }, "isoforms": [ { "isoform_ac": "A0A287B4Y9-1", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#A0A287B4Y9-1", "sequence": { "sequence": "MAAPSPSGGGGSGGGSSSSGTPGPVGSPAPGHPAVSSMQGKRKALKLNFANPPFKSTARFTLNPNPAGVQNPHIERLRTHSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERTVEVACYVCKILDQMPATPSSPMYVD", "length": 374, "header": "tr|A0A287B4Y9-1|F1SS51_PIG Computationally mapped isoform of Dual specificity mitogen-activated protein kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP2K4 PE=1 SV=1 CANONICAL=F1SS51-1" }, "locus": { "chromosome": "12", "start_pos": 56513785, "end_pos": 56402085, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052657.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052657.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051354.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051354.1" } ] } }, { "isoform_ac": "A0A5G2QZR5-1", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#A0A5G2QZR5-1", "sequence": { "sequence": "MAAPSPSGGGGSGGGSSSSGTPGPVGSPAPGHPAVSSMQGFQINFYEKAQSKRKALKLNFANPPFKSTARFTLNPNPAGVQNPHIERLRTHSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERTVEVACYVCKILDQMPATPSSPMYVD", "length": 411, "header": "tr|A0A5G2QZR5-1|F1SS51_PIG Computationally mapped isoform of Dual specificity mitogen-activated protein kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP2K4 PE=1 SV=1 CANONICAL=F1SS51-1" }, "locus": { "chromosome": "12", "start_pos": 56513785, "end_pos": 56402085, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088197.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088197.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070388.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070388.1" } ] } }, { "isoform_ac": "A0A8D1CWD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#A0A8D1CWD0-1", "sequence": { "sequence": "MDTEEQLQWCSGERLRTHSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERTVEVACYVCKILDQMPATPSSPMYVD", "length": 338, "header": "tr|A0A8D1CWD0-1|F1SS51_PIG Computationally mapped isoform of Dual specificity mitogen-activated protein kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP2K4 PE=1 SV=1 CANONICAL=F1SS51-1" }, "locus": { "chromosome": "12", "start_pos": 56513785, "end_pos": 56455902, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089384.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089384.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064592.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064592.1" } ] } }, { "isoform_ac": "A0A8W4F9Q5-1", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#A0A8W4F9Q5-1", "sequence": { "sequence": "GIPCLKLLLFICYFLGKRKALKLNFANPPFKSTARFTLNPNPAGVQNPHIERLRTHSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLAVTHVIDFLNTEWHLCLADIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERTVEVACYVCKILDQMPATPSSPMYVD", "length": 376, "header": "tr|A0A8W4F9Q5-1|F1SS51_PIG Computationally mapped isoform of Dual specificity mitogen-activated protein kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP2K4 PE=1 SV=1 CANONICAL=F1SS51-1" }, "locus": { "chromosome": "12", "start_pos": 56513785, "end_pos": 56437938, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103791.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103791.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076058.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076058.1" } ] } }, { "isoform_ac": "F1SS51-1", "url": "https://www.uniprot.org/uniprotkb/F1SS51/entry#F1SS51-1", "sequence": { "sequence": "MAAPSPSGGGGSGGGSSSSGTPGPVGSPAPGHPAVSSMQGKRKALKLNFANPPFKSTARFTLNPNPAGVQNPHIERLRTHSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERTVEVACYVCKILDQMPATPSSPMYVD", "length": 400, "header": "tr|F1SS51-1|F1SS51_PIG Isoform 1 of Dual specificity mitogen-activated protein kinase kinase 4 OS=Sus scrofa OX=9823 GN=MAP2K4 PE=1 SV=3 CANONICAL=F1SS51-1" }, "locus": { "chromosome": "12", "start_pos": 56513785, "end_pos": 56402085, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019611.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019611.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019092.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019092.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 21, "start_aa": "Thr", "end_pos": 21, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr21", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 392, "start_aa": "Thr", "end_pos": 392, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr392", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1CWD0", "url": "https://www.uniprot.org/uniprotkb/A0A8D1CWD0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520100", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520100", "resource": "KEGG Pathway" }, { "id": "R-SSC-2559580", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "resource": "Reactome", "description": "Oxidative Stress Induced Senescence" }, { "id": "R-SSC-2871796", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871796", "resource": "Reactome", "description": "FCERI mediated MAPK activation" }, { "id": "R-SSC-450321", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450321", "resource": "Reactome", "description": "JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1" } ], "orthologs": [ { "uniprot_canonical_ac": "P45985-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 4", "gene_name": "MAP2K4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPSPSGGGGSGGGSGSGTPGPVGSPAPGHPAVSSMQGKRKALKLNFANPPFKSTARFTLNPNPTGVQNPHIERLRTHSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERAVEVACYVCKILDQMPATPSSPMYVD", "length": 399 }, "evidence": [ { "id": "F1SS51", "url": "https://omabrowser.org/oma/group/F1SS51/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P47809-1", "protein_name": "Dual specificity mitogen-activated protein kinase kinase 4", "gene_name": "Map2k4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPSPSGGGGSGGGGGTPGPIGPPASGHPAVSSMQGKRKALKLNFANPPVKSTARFTLNPNTTGVQNPHIERLRTHSIESSGKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILMYEERTVEVACYVCKILDQMPATPSSPMYVD", "length": 397 }, "evidence": [ { "id": "F1SS51", "url": "https://omabrowser.org/oma/group/F1SS51/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FX43-1", "protein_name": "Mitogen-activated protein kinase kinase 9", "gene_name": "MKK9", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MALVRERRQLNLRLPLPPISDRRFSTSSSSATTTTVAGCNGISACDLEKLNVLGCGNGGIVYKVRHKTTSEIYALKTVNGDMDPIFTRQLMREMEILRRTDSPYVVKCHGIFEKPVVGEVSILMEYMDGGTLESLRGGVTEQKLAGFAKQILKGLSYLHALKIVHRDIKPANLLLNSKNEVKIADFGVSKILVRSLDSCNSYVGTCAYMSPERFDSESSGGSSDIYAGDIWSFGLMMLELLVGHFPLLPPGQRPDWATLMCAVCFGEPPRAPEGCSEEFRSFVECCLRKDSSKRWTAPQLLAHPFLREDL", "length": 310 }, "evidence": [ { "id": "F1SS51", "url": "https://omabrowser.org/oma/group/F1SS51/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" }, { "name": "protein tyrosine kinase activity", "id": "GO:0004713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004713", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" }, { "name": "MAP kinase kinase activity", "id": "GO:0004708", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004708", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "cellular response to stress", "id": "GO:0033554", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033554", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" }, { "name": "ERBB signaling pathway", "id": "GO:0038127", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038127", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" }, { "name": "neuromuscular junction development", "id": "GO:0007528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007528", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" }, { "name": "MAPK cascade", "id": "GO:0000165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000165", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" }, { "name": "cellular response to mechanical stimulus", "id": "GO:0071260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071260", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" }, { "name": "intrinsic apoptotic signaling pathway in response to hydrogen peroxide", "id": "GO:0036481", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036481", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" }, { "name": "smooth muscle cell apoptotic process", "id": "GO:0034390", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034390", "evidence": [ { "database": "UniProtKB", "id": "F1SS51", "url": "https://www.uniprot.org/uniprotkb/F1SS51" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10596", "name": "", "equation": "L-tyrosyl-[protein] + ATP = O-phospho-L-tyrosyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "10596", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10596" } ] }, { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] }, { "id": "R-SSC-168162", "name": "Phosphorylation of human JNKs by activated MKK4/MKK7", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-168162", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-168162" } ] }, { "id": "R-SSC-2730896", "name": "Phosphorylation of MEK4 by MEKK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2730896", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2730896" } ] }, { "id": "R-SSC-450337", "name": "Activated TAK1 phosphorylates MKK4/MKK7", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-168107" ], "output_participant_list": [ "R-SSC-168170" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-450337", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450337" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-168107", "participant_name": "MAP2K4 [cytosol]", "crossref": [ { "id": "A0A5G2QZR5", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000018016", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000070388", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000088197", "database": "ENSEMBL", "url": "" }, { "id": "98101", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-168170", "participant_name": "phospho-p-S257,T261-MAP2K4 [cytosol]", "crossref": [ { "id": "ENSSSCG00000018016", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000088197", "database": "ENSEMBL", "url": "" }, { "id": "98101", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000070388", "database": "ENSEMBL", "url": "" }, { "id": "A0A5G2QZR5", "database": "UniProt", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS51" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 103, "end_pos": 368, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 21, 392 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSK4-1", "uniprot_ac": "F1SSK4", "uniprot_id": "F1SSK4_PIG", "mass": { "chemical_mass": 10421.0, "monoisotopic_mass": 10421.0 }, "refseq": { "ac": "XP_020958325", "name": "mitochondrial import inner membrane translocase subunit Tim9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958325" }, "gene_names": [ { "name": "TIMM9", "type": "recommended", "evidence": [ { "id": "F1SSK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSK4" } ] }, { "name": "TIMM9", "type": "synonym", "evidence": [ { "id": "XP_020958325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958325" } ] } ], "protein_names": [ { "name": "Mitochondrial import inner membrane translocase subunit", "type": "recommended", "evidence": [ { "id": "F1SSK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSK4/entry#names_and_taxonomy" } ] }, { "name": "mitochondrial import inner membrane translocase subunit Tim9", "type": "synonym", "evidence": [ { "id": "XP_020958325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958325" } ] } ], "function": [ { "annotation": "Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1GRX2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GRX2#function" }, { "database": "UniProtKB", "id": "ARBA00025311", "url": "https://www.uniprot.org/uniprotkb/ARBA00025311#function" }, { "database": "UniProtKB", "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4#function" } ] }, { "annotation": "Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1GRX2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GRX2#function" }, { "database": "UniProtKB", "id": "RU367043", "url": "https://www.uniprot.org/uniprotkb/RU367043#function" }, { "database": "UniProtKB", "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TIMM9", "url": "https://www.uniprot.org/uniprotkb/F1SSK4", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000027270", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027270", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100621083", "url": "https://www.ncbi.nlm.nih.gov/gene/100621083", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004217", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004217", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050673", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050673", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621083", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621083", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QDFLRMY", "url": "https://omabrowser.org/oma/group/QDFLRMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSK4", "url": "https://www.orthodb.org/?gene=F1SSK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13172", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13172", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02953", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02953", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1268020", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1268020", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020958325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958325", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D1GRX2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GRX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1GRX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GRX2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSK4-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEENTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAGLLGQPR", "length": 89, "header": "tr|F1SSK4-1|F1SSK4_PIG Isoform 1 of Mitochondrial import inner membrane translocase subunit OS=Sus scrofa OX=9823 GN=TIMM9 PE=1 SV=3 CANONICAL=F1SSK4-1" }, "isoforms": [ { "isoform_ac": "A0A8D1GRX2-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK4/entry#A0A8D1GRX2-1", "sequence": { "sequence": "DSTGSATPQPRSGVVCESLCSSKKSGLTGKNTEAKVRQLLFQNRKETHASEKFKEFLGTYNKLTETCFLDCVKDFTTREVKPEENTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAGLLGQPR", "length": 128, "header": "tr|A0A8D1GRX2-1|F1SSK4_PIG Computationally mapped isoform of Mitochondrial import inner membrane translocase subunit OS=Sus scrofa OX=9823 GN=TIMM9 PE=1 SV=1 CANONICAL=F1SSK4-1" }, "locus": { "chromosome": "1", "start_pos": 187504098, "end_pos": 187486207, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097636.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097636.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076361.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076361.1" } ] } }, { "isoform_ac": "F1SSK4-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK4/entry#F1SSK4-1", "sequence": { "sequence": "MATQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEENTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAGLLGQPR", "length": 89, "header": "tr|F1SSK4-1|F1SSK4_PIG Isoform 1 of Mitochondrial import inner membrane translocase subunit OS=Sus scrofa OX=9823 GN=TIMM9 PE=1 SV=3 CANONICAL=F1SSK4-1" }, "locus": { "chromosome": "1", "start_pos": 187488205, "end_pos": 187486207, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026365.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026365.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021908.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021908.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1GRX2", "url": "https://www.uniprot.org/uniprotkb/A0A8D1GRX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621083", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621083", "resource": "KEGG Pathway" }, { "id": "R-SSC-1268020", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1268020", "resource": "Reactome", "description": "Mitochondrial protein import" } ], "orthologs": [ { "uniprot_canonical_ac": "G3IMX4-1", "protein_name": "Mitochondrial import inner membrane translocase subunit", "gene_name": "Timm9", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAQIPESDQIKQFKEFLGTYNRLTESCFLDCVKDFTTREVKPEEVTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAGLLGQPR", "length": 89 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O74700-1", "protein_name": "Mitochondrial import inner membrane translocase subunit TIM9", "gene_name": "TIM9", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQNAALGQGLGR", "length": 87 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q2KIV2-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim9", "gene_name": "TIMM9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAGLLGQPR", "length": 89 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5ZIR8-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim9", "gene_name": "TIMM9", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGQISETDQIKQFKEFLGTYNKITENCFMDCIRDFTTREVKPEEITCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAGLLSQPR", "length": 89 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9VYD7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim9", "gene_name": "Tim9a", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAKTPENIAIDQLDKDQIKTFSDFLMSYNKLSETCFTDCIRDFTTRDVKDSEEKCSLNCMEKYLKMNQRVSQRFQEFQVIAHENALAMAQKTGKL", "length": 95 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W762-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim9", "gene_name": "timm9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAAQVTESDQIKQFKEFLGTYNKLTENCFMDCVKDFTTREVKPEETTCSESCLQKYLKMTQRISMRFQEYHIQQNERWPQKPDY", "length": 84 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9WV97-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim9", "gene_name": "Timm9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEEVTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAGLLGQPR", "length": 89 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9WV98-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim9", "gene_name": "Timm9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEEVTCSEHCLQKYLKMTQRISVRFQEYHIQQNEALAAKAGLLGQPR", "length": 89 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9XGX9-1", "protein_name": "Mitochondrial import inner membrane translocase subunit TIM9", "gene_name": "TIM9", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQEETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD", "length": 93 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9Y5J7-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim9", "gene_name": "TIMM9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQNEALAAKAGLLGQPR", "length": 89 }, "evidence": [ { "id": "F1SSK4", "url": "https://omabrowser.org/oma/group/F1SSK4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial intermembrane space chaperone complex", "id": "GO:0042719", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042719", "evidence": [ { "database": "UniProtKB", "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4" } ], "pmid": "" }, { "name": "protein insertion into mitochondrial inner membrane", "id": "GO:0045039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045039", "evidence": [ { "database": "UniProtKB", "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4" } ], "pmid": "" }, { "name": "protein transporter activity", "id": "GO:0140318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140318", "evidence": [ { "database": "UniProtKB", "id": "F1SSK4", "url": "https://www.uniprot.org/uniprotkb/F1SSK4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSK4" }, { "id": "PF02953", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02953" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tim10-like", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 69, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L675-1", "uniprot_ac": "I3L675", "uniprot_id": "I3L675_PIG", "mass": { "chemical_mass": 222506.0, "monoisotopic_mass": 222506.0 }, "refseq": {}, "gene_names": [ { "name": "MYH15", "type": "recommended", "evidence": [ { "id": "I3L675", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ] } ], "protein_names": [ { "name": "Myosin heavy chain 15", "type": "synonym", "evidence": [ { "id": "I3L675", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L675/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYH15", "url": "https://www.uniprot.org/uniprotkb/I3L675", "locus": { "chromosome": "13", "start_pos": 151155145, "end_pos": 150981827, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022175", "url": "https://www.ensembl.org/id/ENSSSCG00000022175" } ] } } ], "crossref": [ { "id": "ENSSSCG00000022175", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022175", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002928", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002928", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00063", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00063", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01576", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01576", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FAT1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC53", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FC53-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FC53-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGW7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP64", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP64-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP64-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L675-1", "url": "https://www.uniprot.org/uniprotkb/I3L675-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTWRMDLSELGEAAAFLRRSEAELLLLQATDFDGKKKCWICDGRSAYVEAEIKGSGDDGRIIVETTDGKSLSVKEDEIQQMNPPEFEMVEDMAMLTHLNEASVLHTLKRRYEHGMIYTYSGLSCVSINPHKWLPVYHKDVVAAYRGKRRSEAPPHIFAVADNAFQDMLHNRRNQSILFTGESGAGKTVNTKHVIQYFANIGITGESRERQGTLHDQIKRVNPILEAFGNAKTLRNDNSSRFGKFIRMHFCARGKLSAADIDTYLLEKSRVIFQQPGERNFHIFYQILSGQKALLDMLLVSENPSDFHFCSHGVVAVGSSDDAEELLVTNQAMDILGFLPDEKYGSYKLTGAILHFGNMKFKQKPREEQVEADGMENADKAAFLMGVNASELVKGLIHPRIKVGNEYVTRGQNVEQVTYAVGALSKSIYERMFKWLVARINRALDAKLSRQFFIGILDITGFEMLDYNSLEQLCINFTNEKLQQFFNQHTLVLEQEEYRKEGIDWVPIDFGLDLQACIDLIEKPMGIFSILEEECMFHQATDVTFKTKLFDNHFGKSVHFQKPKPDSEKKHEAHFEVVHYAGVVPYNTSGWLEKNKDFLNETVVAIFQKSSNRLLANLFENSISSNTALQFGEKKRKKGASFRVVASLHKENLNKLMTNLKSTAPHFVRCINPNVNKTPGVMEPYLVLQQLRCNGVLEGSRICREGFPNQFLYADFKQRYYILNPSAFPKSKFVSIRKATEEFLDSLKVDHTQYRFGITKVFLKSGFLGQLEAMRDERLSKVFTLLQARVRRKLMQIKFQKILEERDALLLIQWNIRAFLAVKSWPWMRLFFKIKPLIRSAGMGKEVAGLKEEYVQLQIALEKSESQREELRAKQVSLIQEKNDLLLQLQAERETLANAEEQREALIKSKIQLEASVKTLSERVEEEEEINSELTARGRKLEDECAELKKEIDDLETLLAKSQKEKRATEHKVKSLTEEVESLNDDISKLHQAADAMREAHQQTLEDLHAEEEKLCTLSKARVESLEQQVKELEGALEQESKARMNCEREKRKLEGDLKLNQESMEILESGQLQLAEKLRRKELEMNQMSSQVENEKGRVAQLQKMLKEQQTQIQDLKEELEAERTTRAKVERERADLTRELEDLNERLEEAGGASLAQLEISKKQETKFQKLRQDMEEATLHFEATSASLKKRHADSLAELESQVENLQQIKQTLEKDKGDLQLEVNDLLTQVEQMTRAKANAEKLCGLHEERLNEANAKLDEVTQLANDLTAQKAKLRNENGEFLKRLEEKEALINQLSREKSTFTLQIQDLRGQLAEGTKSQSALAQAVKSAKHDCDLLREQYEEEQEAKAELLWALFKGNAEVVKWRTKYQDDAIRNTEDLEDAKKKLAIRLQEAAEAMGVANAKNASLERARLRLQLELGDTLWDLRKARSTADALDRKQQHFDKCLDDWRQKHEESQVMLAASQKEARALSTELLELRHAYEESAVSQEALQRMNKDLQEEISNLTNQLREGKKNLSEMEKVKKQIEQEKTEVQMTLEEAEGALERNESKILRLQLDLSETKAEFERKLSEKDEEIETFRRKQQCTIDSLQSSLDSEARSRIEVTRLKKSMEGDLTEMELQLGSANRQVSEATKSLGQLQIQIKDLRVQLEDSTRLNSELKEQVAVAERRNTLLQSELEELRSFQEQTERGRRLAEEELLEATEKINLFHAQNTSLLSQKKKLEVDVARMQKEAEEAVQGCQNAEEKAEKAAAEVANMSEELKKEQDTSAHLEKMRKNMEQTIKDLQERLDDAEQTALMGTRKQIQKLESRVHELEGELESEVRRNAEAQRGARRLERCIKELTYQAEEDKKSMGRMQTLMDNLQLKAQSYKQQIEAAEAEANQYLSKYKKLQHELNEAKERAEIAESQVHKLKIKAKEFGRKVFQEQR", "length": 1934, "header": "tr|I3L675-1|I3L675_PIG Isoform 1 of Myosin heavy chain 15 OS=Sus scrofa OX=9823 GN=MYH15 PE=3 SV=3 CANONICAL=I3L675-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FAT1-1", "url": "https://www.uniprot.org/uniprotkb/I3L675/entry#A0A8W4FAT1-1", "sequence": { "sequence": "MYCLLQTLTSASILTFLFLYSLMLNISYSGGSLLRRMDLSELGEAAAFLRRSEAELLLLQATDFDGKKKCWICDGRSAYVEAEIKGSGDDGRIIVETTDGKSLSVKEDEIQQMNPPEFEMVEDMAMLTHLNEASVLHTLKRRYEHGMIYTYSGLSCVSINPHKWLPVYHKDVVAAYRGKRRSEAPPHIFAVADNAFQDMLHNRRNQSILFTGESGAGKTVNTKHVIQYFANIGITGESRERQGTLHDQIKRVNPILEAFGNAKTLRNDNSSRFGKFIRMHFCARGKLSAADIDTYLLEKSRVIFQQPGERNFHIFYQILSGQKALLDMLLVSENPSDFHFCSHGVVAVGSSDDAEELLVTNQAMDILGFLPDEKYGSYKLTGAILHFGNMKFKQKPREEQVEADGMENADKAAFLMGVNASELVKGLIHPRIKVGNEYVTRGQNVEQVTYAVGALSKSIYERMFKWLVARINRALDAKLSRQFFIGILDITGFEMLDYNSLEQLCINFTNEKLQQFFNQHTLVLEQEEYRKEGIDWVPIDFGLDLQACIDLIEKPMGIFSILEEECMFHQATDVTFKTKLFDNHFGKSVHFQKPKPDSEKKHEAHFEVVHYAGVVPYNTSGWLEKNKDFLNETVVAIFQKSSNRLLANLFENSISSNTALQFGEKKRKKGASFRVVASLHKENLNKLMTNLKSTAPHFVRCINPNVNKTPGVMEPYLVLQQLRCNGVLEGSRICREGFPNQFLYADFKQRYYILNPSAFPKSKFVSIRKATEEFLDSLKVDHTQYRFGITKVFLKSGFLGQLEAMRDERLSKVFTLLQARVRRKLMQIKFQKILEERDALLLIQWNIRAFLAVKSWPWMRLFFKIKPLIRSAGMGKEVAGLKEEYVQLQIALEKSESQREELRAKQVSLIQEKNDLLLQLQAERETLANAEEQREALIKSKIQLEASVKTLSERVEEEEEINSELTARGRKLEDECAELKKEIDDLETLLAKSQKEKRATEHKVKSLTEEVESLNDDISKLHQAADAMREAHQQTLEDLHAEEEKLCTLSKARVESLEQQVKELEGALEQESKARMNCEREKRKLEGDLKLNQESMEILESGQLQLAEKLRRKELEMNQMSSQVENEKGRVAQLQKMLKEQQTQIQDLKEELEAERTTRAKVERERADLTRELEDLNERLEEAGGASLAQLEISKKQETKFQKLRQDMEEATLHFEATSASLKKRHADSLAELESQVENLQQIKQTLEKDKGDLQLEVNDLLTQVEQMTRAKANAEKLCGLHEERLNEANAKLDEVTQLANDLTAQKAKLRNENGEFLKRLEEKEALINQLSREKSTFTLQIQDLRGQLAEGTKSQSALAQAVKSAKHDCDLLREQYEEEQEAKAELLWALFKGNAEVVKWRTKYQDDAIRNTEDLEDAKKKLAIRLQEAAEAMGVANAKNASLERARLRLQLELGDTLWDLRKARSTADALDRKQQHFDKCLDDWRQKHEESQVMLAASQKEARALSTELLELRHAYEESAVSQEALQRMNKDLQEEISNLTNQLREGKKNLSEMEKVKKQIEQEKTEVQMTLEEAEGALERNESKILRLQLDLSETKAEFERKLSEKDEEIETFRRKQQCTIDSLQSSLDSEARSRIEVTRLKKSMEGDLTEMELQLGSANRQVSEATKSLGQLQIQIKDLRVQLEDSTRLNSELKEQVAVAERRNTLLQSELEELRSFQEQTERGRRLAEEELLEATEKINLFHAQNTSLLSQKKKLEVDVARMQKEAEEAVQGCQNAEEKAEKAAAEVANMSEELKKEQDTSAHLEKMRKNMEQTIKDLQERLDDAEQTALMGTRKQIQKLESRVHELEGELESEVRRNAEAQRGARRLERCIKELTYQAEEDKKSMGRMQTLMDNLQLKAQSYKQQIEAAEAEANQYLSKYKKLQHELNEAKERAEIAESQVHKLKIKAKEFGRKVCQIFNSALILKAFVSGSCHHVEIS", "length": 1985, "header": "tr|A0A8W4FAT1-1|I3L675_PIG Computationally mapped isoform of Myosin heavy chain 15 OS=Sus scrofa OX=9823 GN=MYH15 PE=3 SV=1 CANONICAL=I3L675-1" }, "locus": { "chromosome": "13", "start_pos": 151154230, "end_pos": 151003710, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106896.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106896.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076429.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076429.1" } ] } }, { "isoform_ac": "A0A8W4FC53-1", "url": "https://www.uniprot.org/uniprotkb/I3L675/entry#A0A8W4FC53-1", "sequence": { "sequence": "MTWRMDLSELGEAAAFLRRSEAELLLLQATDFDGKKKCWICDGRSAYVEAEIKGSGDDGRIIVETTDGKSLSVKEDEIQQMNPPEFEMVEDMAMLTHLNEASVLHTLKRRYEHGMIYTYSGLSCVSINPHKWLPVYHKDVVAAYRGKRRSEAPPHIFAVADNAFQDMLHNRRNQSILFTGESGAGKTVNTKHVIQYFANIGITGESRERQGTLHDQIKRVNPILEAFGNAKTLRNDNSSRFGKFIRMHFCARGKLSAADIDTYLLEKSRVIFQQPGERNFHIFYQILSGQKALLDMLLVSENPSDFHFCSHGVVAVGSSDDAEELLVTNQAMDILGFLPDEKYGSYKLTGAILHFGNMKFKQKPREEQVEADGMENADKAAFLMGVNASELVKGLIHPRIKVGNEYVTRGQNVEQVTYAVGALSKSIYERMFKWLVARINRALDAKLSRQFFIGILDITGFEMLDYNSLEQLCINFTNEKLQQFFNQHTLVLEQEEYRKEGIDWVPIDFGLDLQACIDLIEKPMGIFSILEEECMFHQATDVTFKTKLFDNHFGKSVHFQKPKPDSEKKHEAHFEVVHYAGVVPYNTSGWLEKNKDFLNETVVAIFQKSSNRLLANLFENSISSNTALQFGEKKRKKGASFRVVASLHKENLNKLMTNLKSTAPHFVRCINPNVNKTPGVMEPYLVLQQLRCNGVLEGSRICREGFPNQFLYADFKQRYYILNPSAFPKSKFVSIRKATEEFLDSLKVDHTQYRFGITKVFLKSGFLGQLEAMRDERLSKVFTLLQARVRRKLMQIKFQKILEERDALLLIQWNIRAFLAVKSWPWMRLFFKIKPLIRSAGMGKEVAGLKEEYVQLQIALEKSESQREELRAKQVSLIQEKNDLLLQLQAERETLANAEEQREALIKSKIQLEASVKTLSERVEEEEEINSELTARGRKLEDECAELKKEIDDLETLLAKSQKEKRATEHKVKSLTEEVESLNDDISKLHQAADAMREAHQQTLEDLHAEEEKLCTLSKARVESLEQQVKELEGALEQESKARMNCEREKRKLEGDLKLNQESMEILESGQLQLAEKLRRKELEMNQMSSQVENEKGRVAQLQKMLKEQQTQIQDLKEELEAERTTRAKVERERADLTRELEDLNERLEEAGGASLAQLEISKKQETKFQKLRQDMEEATLHFEATSASLKKRHADSLAELESQVENLQQIKQTLEKDKGDLQLEVNDLLTQVEQMTRAKANAEKLCGLHEERLNEANAKLDEVTQLANDLTAQKAKLRNENGEFLKRLEEKEALINQLSREKSTFTLQIQDLRGQLAEGTKSQSALAQAVKSAKHDCDLLREQYEEEQEAKAELLWALFKGNAEVVKWRTKYQDDAIRNTEDLEDAKKKLAIRLQEAAEAMGVANAKNASLERARLRLQLELGDTLWDLRKARSTADALDRKQQHFDKCLDDWRQKHEESQVMLAASQKEARALSTELLELRHAYEESAVSQEALQRMNKDLQEEISNLTNQLREGKKNLSEMEKVKKQIEQEKTEVQMTLEEAEGALERNESKILRLQLDLSETKAEFERKLSEKDEEIETFRRKQQCTIDSLQSSLDSEARSRIEVTRLKKSMEGDLTEMELQLGSANRQVSEATKSLGQLQIQIKDLRVQLEDSTRLNSELKEQVAVAERRNTLLQSELEELRSFQEQTERGRRLAEEELLEATEKINLFHAQNTSLLSQKKKLEVDVARMQKEAEEAVQGCQNAEEKAEKAAAEVANMSEELKKEQDTSAHLEKMRKNMEQTIKDLQERLDDAEQTALMGTRKQIQKLESRVHELEGELESEVRRNAEAQRGARRLERCIKELTYQAEEDKKSMGRMQTLMDNLQLKAQSYKQQIEAAEAEANQYLSKYKKLQHELNEAKERAEIAESQVHKLKIKAKEFGRKVCQIFNSALILKAFVSGSCHHVEIS", "length": 1953, "header": "tr|A0A8W4FC53-1|I3L675_PIG Computationally mapped isoform of Myosin heavy chain 15 OS=Sus scrofa OX=9823 GN=MYH15 PE=3 SV=1 CANONICAL=I3L675-1" }, "locus": { "chromosome": "13", "start_pos": 151154230, "end_pos": 151003817, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091711.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091711.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076838.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076838.1" } ] } }, { "isoform_ac": "A0A8W4FGW7-1", "url": "https://www.uniprot.org/uniprotkb/I3L675/entry#A0A8W4FGW7-1", "sequence": { "sequence": "MDLSELGEAAAFLRRSEAELLLLQATDFDGKKKCWICDGRSAYVEAEIKGSGDDGRIIVETTDGKSLSVKEDEIQQMNPPEFEMVEDMAMLTHLNEASVLHTLKRRYEHGMIYTYSGLSCVSINPHKWLPVYHKDVVAAYRGKRRSEAPPHIFAVADNAFQDMLHSKWLGESGAGKTVNTKHVIQYFANIGITGESRERQGTLHDQIKRVNPILEAFGNAKTLRNDNSSRFGKFIRMHFCARGKLSAADIDTYLLEKSRVIFQQPGERNFHIFYQILSGQKALLDMLLVSENPSDFHFCSHGVVAVGSSDDAEELLVTNQAMDILGFLPDEKYGSYKLTGAILHFGNMKFKQKPREEQVEADGMENADKAAFLMGVNASELVKGLIHPRIKVGNEYVTRGQNVEQVTYAVGALSKSIYERMFKWLVARINRALDAKLSRQFFIGILDITGFEMLDYNSLEQLCINFTNEKLQQFFNQHTLVLEQEEYRKEGIDWVPIDFGLDLQACIDLIEKPMGIFSILEEECMFHQATDVTFKTKLFDNHFGKSVHFQKPKPDSEKKHEAHFEVVHYAGVVPYNTSGWLEKNKDFLNETVVAIFQKSSNRLLANLFENSISSNTALQFGEKKRKKGASFRVVASLHKENLNKLMTNLKSTAPHFVRCINPNVNKTPGVMEPYLVLQQLRCNGVLEGSRICREGFPNQFLYADFKQRYYILNPSAFPKSKFVSIRKATEEFLDSLKVDHTQYRFGITKVFLKSGFLGQLEAMRDERLSKVFTLLQARVRRKLMQIKFQKILEERDALLLIQWNIRAFLAVKSWPWMRLFFKIKPLIRSAGMGKEVAGLKEEYVQLQIALEKSESQREELRAKQVSLIQEKNDLLLQLQAERETLANAEEQREALIKSKIQLEASVKTLSERVEEEEEINSELTARGRKLEDECAELKKEIDDLETLLAKSQKEKRATEHKVKSLTEEVESLNDDISKLHQAADAMREAHQQTLEDLHAEEEKLCTLSKARVESLEQQVKELEGALEQESKARMNCEREKRKLEGDLKLNQESMEILESGQLQLAEKLRRKELEMNQMSSQVENEKGRVAQLQKMLKEQQTQIQDLKEELEAERTTRAKVERERADLTRELEDLNERLEEAGGASLAQLEISKKQETKFQKLRQDMEEATLHFEATSASLKKRHADSLAELESQVENLQQIKQTLEKDKGDLQLEVNDLLTQVEQMTRAKANAEKLCGLHEERLNEANAKLDEVTQLANDLTAQKAKLRNENGEFLKRLEEKEALINQLSREKSTFTLQIQDLRGQLAEGTKSQSALAQAVKSAKHDCDLLREQYEEEQEAKAELLWALFKGNAEVVKWRTKYQDDAIRNTEDLEDAKKKLAIRLQEAAEAMGVANAKNASLERARLRLQLELGDTLWDLRKARSTADALDRKQQHFDKCLDDWRQKHEESQVMLAASQKEARALSTELLELRHAYEESAVSQEALQRMNKDLQEEISNLTNQLREGKKNLSEMEKVKKQIEQEKTEVQMTLEEAEGALERNESKILRLQLDLSETKAEFERKLSEKDEEIETFRRKQQCTIDSLQSSLDSEARSRIEVTRLKKSMEGDLTEMELQLGSANRQVSEATKSLGQLQIQIKDLRVQLEDSTRLNSELKEQVAVAERRNTLLQSELEELRSFQEQTERGRRLAEEELLEATEKINLFHAQNTSLLSQKKKLEVDVARMQKEAEEAVQGCQNAEEKAEKAAAEVANMSEELKKEQDTSAHLEKMRKNMEQTIKDLQERLDDAEQTALMGTRKQIQKLESRVHELEGELESEVRRNAEAQRGARRLERCIKELTYQAEEDKKSMGRMQTLMDNLQLKAQSYKQQIEAAEAEANQYLSKYKKLQHELNEAKERAEIAESQVHKLKIKAKEFGRKELFTSLWSMKL", "length": 1929, "header": "tr|A0A8W4FGW7-1|I3L675_PIG Computationally mapped isoform of Myosin heavy chain 15 OS=Sus scrofa OX=9823 GN=MYH15 PE=3 SV=1 CANONICAL=I3L675-1" }, "locus": { "chromosome": "13", "start_pos": 151154852, "end_pos": 151004476, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102704.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102704.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078121.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078121.1" } ] } }, { "isoform_ac": "A0A8W4FP64-1", "url": "https://www.uniprot.org/uniprotkb/I3L675/entry#A0A8W4FP64-1", "sequence": { "sequence": "MGLALPARAVVAVGSPCVSHSHKLRFALFQPNKKCWICDGRSAYVEAEIKGSGDDGRIIVETTDGKSLSVKEDEIQQMNPPEFEMVEDMAMLTHLNEASVLHTLKRRYEHGMIYTYSGLSCVSINPHKWLPVYHKDVVAAYRGKRRSEAPPHIFAVADNAFQDMLHSKWLGESGAGKTVNTKHVIQYFANIGITGESRERQGTLHDQIKRVNPILEAFGNAKTLRNDNSSRFGKFIRMHFCARGKLSAADIDTYLLEKSRVIFQQPGERNFHIFYQILSGQKALLDMLLVSENPSDFHFCSHGVVAVGSSDDAEELLVTNQAMDILGFLPDEKYGSYKLTGAILHFGNMKFKQKPREEQVEADGMENADKAAFLMGVNASELVKGLIHPRIKVGNEYVTRGQNVEQVTYAVGALSKSIYERMFKWLVARINRALDAKLSRQFFIGILDITGFEMLDYNSLEQLCINFTNEKLQQFFNQHTLVLEQEEYRKEGIDWVPIDFGLDLQACIDLIEKPMGIFSILEEECMFHQATDVTFKTKLFDNHFGKSVHFQKPKPDSEKKHEAHFEVVHYAGVVPYNTSGWLEKNKDFLNETVVAIFQKSSNRLLANLFENSISSNTALQFGEKKRKKGASFRVVASLHKENLNKLMTNLKSTAPHFVRCINPNVNKTPGVMEPYLVLQQLRCNGVLEGSRICREGFPNQFLYADFKQRYYILNPSAFPKSKFVSIRKATEEFLDSLKVDHTQYRFGITKVFLKSGFLGQLEAMRDERLSKVFTLLQARVRRKLMQIKFQKILEERDALLLIQWNIRAFLAVKSWPWMRLFFKIKPLIRSAGMGKEVAGLKEEYVQLQIALEKSESQREELRAKQVSLIQEKNDLLLQLQAERETLANAEEQREALIKSKIQLEASVKTLSERVEEEEEINSELTARGRKLEDECAELKKEIDDLETLLAKSQKEKRATEHKVKSLTEEVESLNDDISKLHQAADAMREAHQQTLEDLHAEEEKLCTLSKARVESLEQQLEGALEQESKARMNCEREKRKLEGDLKLNQESMEILESGQLQLAEKLRRKELEMNQMSSQVENEKGRVAQLQKMLKEQQTQIQDLKEELEAERTTRAKVERERADLTRELEDLNERLEEAGGASLAQLEISKKQETKFQKLRQDMEEATLHFEATSASLKKRHADSLAELESQVENLQQIKQTLEKDKGDLQLEVNDLLTQVEQMTRAKANAEKLCGLHEERLNEANAKLDEVTQLANDLTAQKAKLRNENGEFLKRLEEKEALINQLSREKSTFTLQIQDLRGQLAEGTKSQSALAQAVKSAKHDCDLLREQYEEEQEAKAELLWALFKGNAEVVKWRTKYQDDAIRNTEDLEDAKKKLAIRLQEAAEAMGVANAKNASLERARLRLQLELGDTLWDLRKARSTADALDRKQQHFDKCLDDWRQKHEESQVMLAASQKEARALSTELLELRHAYEESAVSQEALQRMNKDLQEEISNLTNQLREGKKNLSEMEKVKKQIEQEKTEVQMTLEEAEGALERNESKILRLQLDLSETKAEFERKLSEKDEEIETFRRKQQCTIDSLQSSLDSEARSRIEVTRLKKSMEGDLTEMELQLGSANRQVSEATKSLGQLQIQIKDLRVQLEDSTRLNSELKEQVAVAERRNTLLQSELEELRSFQEQTERGRRLAEEELLEATEKINLFHAQNTSLLSQKKKLEVDVARMQKEAEEAVQGCQNAEEKAEKAAAEVANMSEELKKEQDTSAHLEKMRKNMEQTIKDLQERLDDAEQTALMGTRKQIQKLESRVHELEGELESEVRRNAEAQRGARRLERCIKELTYQAEEDKKSMGRMQTLMDNLQLKAQSYKQQIEAAEAEANQYLSKYKKLQHELNEAKERAEIAESQVHKLKIKAKEFGRKEEAL", "length": 1920, "header": "tr|A0A8W4FP64-1|I3L675_PIG Computationally mapped isoform of Myosin heavy chain 15 OS=Sus scrofa OX=9823 GN=MYH15 PE=3 SV=1 CANONICAL=I3L675-1" }, "locus": { "chromosome": "13", "start_pos": 151155142, "end_pos": 151007832, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099373.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099373.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080095.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080095.1" } ] } }, { "isoform_ac": "I3L675-1", "url": "https://www.uniprot.org/uniprotkb/I3L675/entry#I3L675-1", "sequence": { "sequence": "MTWRMDLSELGEAAAFLRRSEAELLLLQATDFDGKKKCWICDGRSAYVEAEIKGSGDDGRIIVETTDGKSLSVKEDEIQQMNPPEFEMVEDMAMLTHLNEASVLHTLKRRYEHGMIYTYSGLSCVSINPHKWLPVYHKDVVAAYRGKRRSEAPPHIFAVADNAFQDMLHNRRNQSILFTGESGAGKTVNTKHVIQYFANIGITGESRERQGTLHDQIKRVNPILEAFGNAKTLRNDNSSRFGKFIRMHFCARGKLSAADIDTYLLEKSRVIFQQPGERNFHIFYQILSGQKALLDMLLVSENPSDFHFCSHGVVAVGSSDDAEELLVTNQAMDILGFLPDEKYGSYKLTGAILHFGNMKFKQKPREEQVEADGMENADKAAFLMGVNASELVKGLIHPRIKVGNEYVTRGQNVEQVTYAVGALSKSIYERMFKWLVARINRALDAKLSRQFFIGILDITGFEMLDYNSLEQLCINFTNEKLQQFFNQHTLVLEQEEYRKEGIDWVPIDFGLDLQACIDLIEKPMGIFSILEEECMFHQATDVTFKTKLFDNHFGKSVHFQKPKPDSEKKHEAHFEVVHYAGVVPYNTSGWLEKNKDFLNETVVAIFQKSSNRLLANLFENSISSNTALQFGEKKRKKGASFRVVASLHKENLNKLMTNLKSTAPHFVRCINPNVNKTPGVMEPYLVLQQLRCNGVLEGSRICREGFPNQFLYADFKQRYYILNPSAFPKSKFVSIRKATEEFLDSLKVDHTQYRFGITKVFLKSGFLGQLEAMRDERLSKVFTLLQARVRRKLMQIKFQKILEERDALLLIQWNIRAFLAVKSWPWMRLFFKIKPLIRSAGMGKEVAGLKEEYVQLQIALEKSESQREELRAKQVSLIQEKNDLLLQLQAERETLANAEEQREALIKSKIQLEASVKTLSERVEEEEEINSELTARGRKLEDECAELKKEIDDLETLLAKSQKEKRATEHKVKSLTEEVESLNDDISKLHQAADAMREAHQQTLEDLHAEEEKLCTLSKARVESLEQQVKELEGALEQESKARMNCEREKRKLEGDLKLNQESMEILESGQLQLAEKLRRKELEMNQMSSQVENEKGRVAQLQKMLKEQQTQIQDLKEELEAERTTRAKVERERADLTRELEDLNERLEEAGGASLAQLEISKKQETKFQKLRQDMEEATLHFEATSASLKKRHADSLAELESQVENLQQIKQTLEKDKGDLQLEVNDLLTQVEQMTRAKANAEKLCGLHEERLNEANAKLDEVTQLANDLTAQKAKLRNENGEFLKRLEEKEALINQLSREKSTFTLQIQDLRGQLAEGTKSQSALAQAVKSAKHDCDLLREQYEEEQEAKAELLWALFKGNAEVVKWRTKYQDDAIRNTEDLEDAKKKLAIRLQEAAEAMGVANAKNASLERARLRLQLELGDTLWDLRKARSTADALDRKQQHFDKCLDDWRQKHEESQVMLAASQKEARALSTELLELRHAYEESAVSQEALQRMNKDLQEEISNLTNQLREGKKNLSEMEKVKKQIEQEKTEVQMTLEEAEGALERNESKILRLQLDLSETKAEFERKLSEKDEEIETFRRKQQCTIDSLQSSLDSEARSRIEVTRLKKSMEGDLTEMELQLGSANRQVSEATKSLGQLQIQIKDLRVQLEDSTRLNSELKEQVAVAERRNTLLQSELEELRSFQEQTERGRRLAEEELLEATEKINLFHAQNTSLLSQKKKLEVDVARMQKEAEEAVQGCQNAEEKAEKAAAEVANMSEELKKEQDTSAHLEKMRKNMEQTIKDLQERLDDAEQTALMGTRKQIQKLESRVHELEGELESEVRRNAEAQRGARRLERCIKELTYQAEEDKKSMGRMQTLMDNLQLKAQSYKQQIEAAEAEANQYLSKYKKLQHELNEAKERAEIAESQVHKLKIKAKEFGRKVFQEQR", "length": 1934, "header": "tr|I3L675-1|I3L675_PIG Isoform 1 of Myosin heavy chain 15 OS=Sus scrofa OX=9823 GN=MYH15 PE=3 SV=3 CANONICAL=I3L675-1" }, "locus": { "chromosome": "13", "start_pos": 151154645, "end_pos": 151003817, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027252.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027252.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019526.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019526.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FAT1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "pmid": "" }, { "name": "microfilament motor activity", "id": "GO:0000146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000146", "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "pmid": "" }, { "name": "cytoskeletal motor activity", "id": "GO:0003774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003774", "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "pmid": "" }, { "name": "myosin filament", "id": "GO:0032982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032982", "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "pmid": "" }, { "name": "myosin II complex", "id": "GO:0016460", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016460", "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "pmid": "" }, { "name": "myosin complex", "id": "GO:0016459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016459", "evidence": [ { "database": "UniProtKB", "id": "I3L675", "url": "https://www.uniprot.org/uniprotkb/I3L675" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1409, "end_pos": 1411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1509, "end_pos": 1511, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1520, "end_pos": 1522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1552, "end_pos": 1554, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1718, "end_pos": 1720, "annotation": "n_glycosylation_sequon" }, { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1762, "end_pos": 1764, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 586, "end_pos": 588, "annotation": "n_glycosylation_sequon" }, { "start_pos": 599, "end_pos": 601, "annotation": "n_glycosylation_sequon" }, { "start_pos": 675, "end_pos": 677, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L675", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L675" }, { "id": "PS51844", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51844" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin N-terminal SH3-like", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 83, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L675", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L675" }, { "id": "PS51456", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51456" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin motor", "eco_id": "ECO_0000259", "start_pos": 87, "end_pos": 775, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1409, "end_pos": 1411 }, { "start_pos": 1509, "end_pos": 1511 }, { "start_pos": 1520, "end_pos": 1522 }, { "start_pos": 1552, "end_pos": 1554 }, { "start_pos": 1718, "end_pos": 1720 }, { "start_pos": 173, "end_pos": 175 }, { "start_pos": 1762, "end_pos": 1764 }, { "start_pos": 237, "end_pos": 239 }, { "start_pos": 387, "end_pos": 389 }, { "start_pos": 475, "end_pos": 477 }, { "start_pos": 586, "end_pos": 588 }, { "start_pos": 599, "end_pos": 601 }, { "start_pos": 675, "end_pos": 677 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5B4-1", "uniprot_ac": "I3L5B4", "uniprot_id": "I3L5B4_PIG", "mass": { "chemical_mass": 22198.0, "monoisotopic_mass": 22198.0 }, "refseq": {}, "gene_names": [ { "name": "VXN", "type": "recommended", "evidence": [ { "id": "I3L5B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5B4" } ] } ], "protein_names": [ { "name": "Vexin", "type": "recommended", "evidence": [ { "id": "I3L5B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5B4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5B4", "url": "https://www.uniprot.org/uniprotkb/I3L5B4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VXN", "url": "https://www.uniprot.org/uniprotkb/I3L5B4", "locus": { "chromosome": "4", "start_pos": 68202216, "end_pos": 68224811, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023848", "url": "https://www.ensembl.org/id/ENSSSCG00000023848" } ] } } ], "crossref": [ { "id": "I3L5B4", "url": "https://alphafold.ebi.ac.uk/entry/I3L5B4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023848", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023848", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR027900", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027900", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040470", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040470", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR31520", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31520", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31520:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31520:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FAV7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK80", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK80-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM94", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM94-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5B4", "url": "https://www.uniprot.org/uniprotkb/I3L5B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5B4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5B4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TMHQIYSCSDENIEVFTTVIPSKVSSPARRRVKSSQHLLTKNVVIESDLYTTRPLELLPHRSERRDGEARRPGRFQNARQQGPHPAKTPTRPGGISEPKSANLCGSRAYGKALMPPVARISVKAPAVLEAAAPGLENGAVLTRGSRNLKKMTEEYPTLPQGAEASLPLTGSASCGVPSILRKMWSRHKKKSEYVGATNSAFEAD", "length": 204, "header": "tr|I3L5B4-1|I3L5B4_PIG Isoform 1 of Vexin OS=Sus scrofa OX=9823 GN=VXN PE=3 SV=4 CANONICAL=I3L5B4-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FAV7-1", "url": "https://www.uniprot.org/uniprotkb/I3L5B4/entry#A0A8W4FAV7-1", "sequence": { "sequence": "MHQIYSCSDENIEVFTTVIPSKVSSPARRRVKSSQHLLTKNVVIESDLYTTRPLELLPHRSERRDGEARRPGRFQNARQQGPHPAKTPTRPGGISEPKSANLCGSRAYGKALMATSSHSLLTTQMPPVARISVKAPAVLEAAAPGLENGAVLTRGSRNLKKMTEEYPTLPQGAEASLPLTGSASCGVPSILRKMWSRHKKKSEYVGATNSAFEAD", "length": 215, "header": "tr|A0A8W4FAV7-1|I3L5B4_PIG Computationally mapped isoform of Vexin OS=Sus scrofa OX=9823 GN=VXN PE=3 SV=1 CANONICAL=I3L5B4-1" }, "locus": { "chromosome": "4", "start_pos": 68224501, "end_pos": 68204376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103554.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103554.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076454.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076454.1" } ] } }, { "isoform_ac": "A0A8W4FK80-1", "url": "https://www.uniprot.org/uniprotkb/I3L5B4/entry#A0A8W4FK80-1", "sequence": { "sequence": "TMHQIYSCSDENIEVFTTVIPSKVSSPARRRVKSSQHLLTKNVVIESDLYTTRPLELLPHRSERRDGEARRPGRFQNARQQGPHPAKTPTRPDASGGPDLRESPCCPGGGSPRLGEWSCSDQRVQKPQEDD", "length": 131, "header": "tr|A0A8W4FK80-1|I3L5B4_PIG Computationally mapped isoform of Vexin OS=Sus scrofa OX=9823 GN=VXN PE=3 SV=1 CANONICAL=I3L5B4-1" }, "locus": { "chromosome": "4", "start_pos": 68224504, "end_pos": 68204533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100216.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100216.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079866.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079866.1" } ] } }, { "isoform_ac": "A0A8W4FM94-1", "url": "https://www.uniprot.org/uniprotkb/I3L5B4/entry#A0A8W4FM94-1", "sequence": { "sequence": "TMHQIYSCSDENIEVFTTVIPSKVSSPARRRVKSSQHLLTKNVVIESDLYTTRPLELLPHRSERRDGEARRPGRFQNARQQGPHPAKTPTRPGGISEPKSANLCGSRAYGKALVQKPQEDD", "length": 121, "header": "tr|A0A8W4FM94-1|I3L5B4_PIG Computationally mapped isoform of Vexin OS=Sus scrofa OX=9823 GN=VXN PE=3 SV=1 CANONICAL=I3L5B4-1" }, "locus": { "chromosome": "4", "start_pos": 68224504, "end_pos": 68204533, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103280.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103280.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080615.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080615.1" } ] } }, { "isoform_ac": "I3L5B4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5B4/entry#I3L5B4-1", "sequence": { "sequence": "TMHQIYSCSDENIEVFTTVIPSKVSSPARRRVKSSQHLLTKNVVIESDLYTTRPLELLPHRSERRDGEARRPGRFQNARQQGPHPAKTPTRPGGISEPKSANLCGSRAYGKALMPPVARISVKAPAVLEAAAPGLENGAVLTRGSRNLKKMTEEYPTLPQGAEASLPLTGSASCGVPSILRKMWSRHKKKSEYVGATNSAFEAD", "length": 204, "header": "tr|I3L5B4-1|I3L5B4_PIG Isoform 1 of Vexin OS=Sus scrofa OX=9823 GN=VXN PE=3 SV=4 CANONICAL=I3L5B4-1" }, "locus": { "chromosome": "4", "start_pos": 68224504, "end_pos": 68204376, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032451.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032451.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019213.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019213.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FAV7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L5B4", "url": "https://www.uniprot.org/uniprotkb/I3L5B4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L5B4", "url": "https://www.uniprot.org/uniprotkb/I3L5B4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neuron differentiation", "id": "GO:0030182", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030182", "evidence": [ { "database": "UniProtKB", "id": "I3L5B4", "url": "https://www.uniprot.org/uniprotkb/I3L5B4" } ], "pmid": "" }, { "name": "neurogenesis", "id": "GO:0022008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022008", "evidence": [ { "database": "UniProtKB", "id": "I3L5B4", "url": "https://www.uniprot.org/uniprotkb/I3L5B4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5B4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 204, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5B4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5B4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5B4" }, { "id": "PF15505", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15505" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Vexin", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 117, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQG0-1", "uniprot_ac": "F1SQG0", "uniprot_id": "F1SQG0_PIG", "mass": { "chemical_mass": 138082.0, "monoisotopic_mass": 138082.0 }, "refseq": { "ac": "XP_003483259", "name": "peregrin isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483259" }, "gene_names": [ { "name": "BRPF1", "type": "recommended", "evidence": [ { "id": "F1SQG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ] }, { "name": "BRPF1", "type": "synonym", "evidence": [ { "id": "XP_003483259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483259" } ] } ], "protein_names": [ { "name": "Bromodomain and PHD finger containing 1", "type": "synonym", "evidence": [ { "id": "F1SQG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQG0/entry#names_and_taxonomy" } ] }, { "name": "peregrin isoform X5", "type": "synonym", "evidence": [ { "id": "XP_003483259", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483259" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BRPF1", "url": "https://www.uniprot.org/uniprotkb/F1SQG0", "locus": { "chromosome": "13", "start_pos": 66037445, "end_pos": 66021325, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011548", "url": "https://www.ensembl.org/id/ENSSSCG00000011548" } ] } } ], "crossref": [ { "id": "F1SQG0", "url": "https://alphafold.ebi.ac.uk/entry/F1SQG0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011548", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011548", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05512", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05512", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15676", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15676", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15701", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15701", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20156", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20156", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155061", "url": "https://www.ncbi.nlm.nih.gov/gene/100155061", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001487", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001487", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034732", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034732", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049583", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049583", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PDYMDIV", "url": "https://omabrowser.org/oma/group/PDYMDIV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQG0", "url": "https://www.orthodb.org/?gene=F1SQG0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13793", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13793", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13793:SF85", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13793:SF85", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00439", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00439", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10513", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10513", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13831", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13831", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13832", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13832", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3214847", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804758", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804758", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003483259", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483259", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FDB7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDB7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQG0-1", "url": "https://www.uniprot.org/uniprotkb/F1SQG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LMI5", "url": "https://www.uniprot.org/uniprotkb/I3LMI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LMI5-1", "url": "https://www.uniprot.org/uniprotkb/I3LMI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDNPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPSREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHHNASASTTPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKVQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHSLAGDEAPHHTEDAAEEEGLVLLENQKYLPVEEQLKVLLKELDDVKASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGSLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSGGNQPVKKSFLVYRNDCSLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHSMVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1220, "header": "tr|F1SQG0-1|F1SQG0_PIG Isoform 1 of Bromodomain and PHD finger containing 1 OS=Sus scrofa OX=9823 GN=BRPF1 PE=4 SV=4 CANONICAL=F1SQG0-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FDB7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQG0/entry#A0A8W4FDB7-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDNPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPSREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHHNASASTTPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKVQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHSLAGDEAPHHTEDAEEEGLVLLENQKYLPVEEQLKVLLKELDDVKASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGSLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSGGNQPVKKSFLVYRNDCSLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHSSKYACPKPGVPGAQSQGHARPLAADPPPLSHSYEVVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1253, "header": "tr|A0A8W4FDB7-1|F1SQG0_PIG Computationally mapped isoform of Bromodomain and PHD finger containing 1 OS=Sus scrofa OX=9823 GN=BRPF1 PE=4 SV=1 CANONICAL=F1SQG0-1" }, "locus": { "chromosome": "13", "start_pos": 66036773, "end_pos": 66023614, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097726.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097726.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076849.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076849.1" } ] } }, { "isoform_ac": "F1SQG0-1", "url": "https://www.uniprot.org/uniprotkb/F1SQG0/entry#F1SQG0-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDNPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPSREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHHNASASTTPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKVQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHSLAGDEAPHHTEDAAEEEGLVLLENQKYLPVEEQLKVLLKELDDVKASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGSLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSGGNQPVKKSFLVYRNDCSLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHSMVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1220, "header": "tr|F1SQG0-1|F1SQG0_PIG Isoform 1 of Bromodomain and PHD finger containing 1 OS=Sus scrofa OX=9823 GN=BRPF1 PE=4 SV=4 CANONICAL=F1SQG0-1" }, "locus": { "chromosome": "13", "start_pos": 66036773, "end_pos": 66023614, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012638.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012638.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012306.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012306.5" } ] } }, { "isoform_ac": "I3LMI5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQG0/entry#I3LMI5-1", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDNPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPSREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHHNASASTTPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKVQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVTELDEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHSLAGDEAPHHTEDAEEEGLVLLENQKYLPVEEQLKVLLKELDDVKASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGSLTPHPAACDKDGQTDSAAEESSSQETSKDLPANGFSGGNQPVKKSFLVYRNDCSLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHSMVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1124, "header": "tr|I3LMI5-1|F1SQG0_PIG Computationally mapped isoform of Bromodomain and PHD finger containing 1 OS=Sus scrofa OX=9823 GN=BRPF1 PE=4 SV=4 CANONICAL=F1SQG0-1" }, "locus": { "chromosome": "13", "start_pos": 66036773, "end_pos": 66023614, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028565.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028565.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025306.4", "url": "https://www.ensembl.org/id/ENSSSCP00000025306.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LMI5", "url": "https://www.uniprot.org/uniprotkb/I3LMI5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3214847", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "resource": "Reactome", "description": "HATs acetylate histones" }, { "id": "R-SSC-6804758", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804758", "resource": "Reactome", "description": "Regulation of TP53 Activity through Acetylation" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A411-1", "protein_name": "Bromodomain and PHD finger containing, 1", "gene_name": "Brpf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDSPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHSAPASAAPKLPEVVYRELDQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEEEDEEEDEGKSWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKIQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHNLAGDEVSHHTEDVEEERLVLLENQKHLPVEEQLKLLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSGRGNLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMGSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSSGNQPVKKSFLVYRNDCNLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHSMVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1212 }, "evidence": [ { "id": "F1SQG0", "url": "https://omabrowser.org/oma/group/F1SQG0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P55201-1", "protein_name": "Peregrin", "gene_name": "BRPF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGVDFDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYHYDHDNPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVDLHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDSNHHHHHNVSASTTPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMDEEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRRCLQSPSRAVDCALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPPGSARRLPALSHSEGEEDEDEEEDEGKGWSSEKVKKAKAKSRIKMKKARKILAEKRAAAPVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQSQRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKVQQIAMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMGIDFETGMHIPHSLAGDEATHHTEDAAEEERLVLLENQKHLPVEEQLKLLLERLDEVNASKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGSLTPHPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQRKRGRSPRPSSSSDSDSDKSTEDPPMDLPANGFSGGNQPVKKSFLVYRNDCSLPRSSSDSESSSSSSSSAASDRTSTTPSKQGRGKPSFSRGTFPEDSSEDTSGTENEAYSVGTGRGVGHSMVRKSLGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSNIRKSVQIAYHRALQHRSKVQGEQSSETSDSD", "length": 1214 }, "evidence": [ { "id": "F1SQG0", "url": "https://omabrowser.org/oma/group/F1SQG0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7JVP4-1", "protein_name": "Bromodomain-containing protein homolog", "gene_name": "Br140", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGLDFDAVEYCKGVKTQQSQPPFACPVRGCDRSYKTIMGLQYHLMKYDHDNPQPLTPVLTPSRKKARSRSGGHHSTPRPHKDHPTPGGGGAEARNGCSSASAGGGSASGVSARQYANPESLVSYNEEEATVTFNLDGKSVRLGIDDALPLVEDEEFAALVARGCILNADAPPLEENAPWARVQVPVARVAEIPDYRVSDAPPRPLAYYRFIEKSLEELDGEVEYDVDEEDSAWLEHMNEERQRLGLNAVGIDTMELLMDRLEKESHFQAAANGTPTGVEVDDDAVCCICLDGECQNTNVILFCDMCNLAVHQDCYGVPYIPEGQWLCRRCLQSPSKPVNCVLCPNAGGAFKQTDHGQWAHVVCALWIPEVRFANTVFLEPIDSIETIPPARWRLTCYVCKEKGLGACIQCHRNSCYAAFHVTCAQQAGLYMTMDTVKDGHNDSSMHVQKFAYCHAHTPADAKLKMNVPDFEDTRHKMKEARKALAKKRSTAPVVLIPTIPPDRVQEIATMVTMQRKKEFLDRIIAYWTLKRHYRNGVPLLRRLQSQGNNHGVIQRNGIEGSPDTGELYRQLKYWQCLRQDLERARLLCELVRKREKLKVAFVRISEEVVMLQLNPLEAALNKLLDALEARDSMQIFREPVDTSEVPDYTDIVKQPMDLGTMRAKLKECQYNSLEQLEADFDLMIQNCLAYNNKDTVFYRAGIRMRDQAAPLFVQVRKELQRDGLLARSQRYHVDHVEAEVEQELRLLLAAPASEGIVQKLLILADKSQVLKNPTYRTKKIKQIRLEISRMRKSLQKARFAARHSSHANQSQSDDEDTLGGSPSKKRTRKRFNSSGVDMELGHDDDDEEEDSDEDSMGEDTVSKDLLNSTQTPPCSPIKSLNNSSSPVGINRRTAILLTRKAQAALKRPSEPLTTPVKEEQHNSQSSNTQSTSGSSSSVTTAATAASSGAGTLNHVLSSAPPTASSFALTQNNSSGGGALASGTGIGGSSSAGTAAAASLTSTALAMNSKLSANLPVKSPKRPGRYRRVPEVRHSSSMSPKKSPNPAVTVSQALPMPETLPFERIPDSFRVYRANNQRDVSDSDDAPSQSSSPCSSCSDFSMSGSCSDFDSDEASEGDADGDPDRDGGRSRSEERDSTSQEGTTDAMDMQHASLNNVQGNNGNMAISSSSGGSGGSSSEDDELEERPLSARQNKPMKVGTRGTPTPTTMARAVALSAGRGRGKRRSNLSESTSSTATPPPLRRAGKLRSATPNASPLVNNIKARRNTTAAGSAPLTNNNRSKHSEDSASSERHNNHSHGQKPALEPLQLVWAKCRGYPWYPALILDPKTPKGFVYNGVPLPAPPTDVLALRKNCLDEIVFLVLFFDVKRTWQWLPANKLDILGIDKQLDQQKLVESRKPAERKAVKKAYQDALHYQSQVSDLEGQGPDPIM", "length": 1430 }, "evidence": [ { "id": "F1SQG0", "url": "https://omabrowser.org/oma/group/F1SQG0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "histone H4K12 acetyltransferase activity", "id": "GO:0043997", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043997", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "histone H4K5 acetyltransferase activity", "id": "GO:0043995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043995", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "histone H4K8 acetyltransferase activity", "id": "GO:0043996", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043996", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "acetyltransferase activator activity", "id": "GO:0010698", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010698", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "histone reader activity", "id": "GO:0140566", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140566", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "MOZ/MORF histone acetyltransferase complex", "id": "GO:0070776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070776", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "F1SQG0", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 883, "end_pos": 885, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQG0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1220, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQG0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQG0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" }, { "id": "PS50014", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50014" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Bromo", "eco_id": "ECO_0000259", "start_pos": 645, "end_pos": 721, "start_aa": "Gln", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 52, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" }, { "id": "PS51805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 273, "end_pos": 323, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQG0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQG0" }, { "id": "PS50812", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50812" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PWWP", "eco_id": "ECO_0000259", "start_pos": 1091, "end_pos": 1174, "start_aa": "Ala", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 }, { "start_pos": 167, "end_pos": 169 }, { "start_pos": 432, "end_pos": 434 }, { "start_pos": 883, "end_pos": 885 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQD9-1", "uniprot_ac": "F1SQD9", "uniprot_id": "F1SQD9_PIG", "mass": { "chemical_mass": 45367.0, "monoisotopic_mass": 45367.0 }, "refseq": {}, "gene_names": [ { "name": "CRELD1", "type": "recommended", "evidence": [ { "id": "F1SQD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD9" } ] } ], "protein_names": [ { "name": "protein disulfide-isomerase", "type": "recommended", "evidence": [ { "id": "F1SQD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD9/entry#names_and_taxonomy" } ] }, { "name": "5.3.4.1", "type": "synonym", "evidence": [ { "id": "F1SQD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQD9", "url": "https://www.uniprot.org/uniprotkb/F1SQD9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CRELD1", "url": "https://www.uniprot.org/uniprotkb/F1SQD9", "locus": { "chromosome": "13", "start_pos": 66203412, "end_pos": 66194865, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011560", "url": "https://www.ensembl.org/id/ENSSSCG00000011560" } ] } } ], "crossref": [ { "id": "F1SQD9", "url": "https://alphafold.ebi.ac.uk/entry/F1SQD9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011560", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011560", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00064", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00064", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006212", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006212", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021852", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021852", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24034", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24034", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24034:SF114", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24034:SF114", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11938", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11938", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4F8H8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F8H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F8H8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEL2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FEL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEL2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJ22", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJ22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJ22-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJ22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQD9", "url": "https://www.uniprot.org/uniprotkb/F1SQD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SQD9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPRPPKGLAPALLWVLSLFIGLPSPVLVQPSPPPQSSPPTEPHPCHTCRGLVDSFYKGLERTIRDNFGGGNTAWEEEKLSKYKDSETRLVEVLEGVCSKSDFECHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPSGTFGPTCLPCPGGTERPCGGYGQCEGEGTRGGSGRCDCQAGYGEACGQCGLGYFEAERNSSHLVCSACFGPCARCSGPEESNCLQCKKGWALHHLKCVDIDECGTERASCGADQFCVNTEGSYECRDCAKACLGCMGAGPGRCKKCSPGYQQVGSKCLDVDECETAVCPGENEKCENTEGSYRCICAEGYKQIEGICVKEQIPESAGFFSEMTEDELVVLQQMFFGVIICALATLAAKGDLVFTAIFIGAVAAMTGYWLSERSDRVLEGFIKGR", "length": 419, "header": "tr|F1SQD9-1|F1SQD9_PIG Isoform 1 of protein disulfide-isomerase OS=Sus scrofa OX=9823 GN=CRELD1 PE=1 SV=3 CANONICAL=F1SQD9-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F8H8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQD9/entry#A0A8W4F8H8-1", "sequence": { "sequence": "MAPRPPKGLAPALLWVLSLFIGLPSPVLVQPSPPPQSSPPTEPHPCHTCRGLVDSFYKGLERTIRDNFGGGNTAWEEEKLSKYKDSETRLVEVLEGVCSKSDFECHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPSGTFGPTCLPCPGGTERPCGGYGQCEGEGTRGGSGRCDCQAGYGEACGQCGLGYFEAERNSSHLVCSACFGPCARCSGPEESNCLQCKKGWALHHLKCVDIDECGTERASCGADQFCVNTEGSYECRDCAKACLGCMGAGPGRCKKCSPGYQQTWMNVRRRFVQGRTKNVRTLRAVTAASVPRATNRLRASV", "length": 336, "header": "tr|A0A8W4F8H8-1|F1SQD9_PIG Computationally mapped isoform of protein disulfide-isomerase OS=Sus scrofa OX=9823 GN=CRELD1 PE=1 SV=1 CANONICAL=F1SQD9-1" }, "locus": { "chromosome": "13", "start_pos": 66201993, "end_pos": 66195464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100965.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100965.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074635.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074635.1" } ] } }, { "isoform_ac": "A0A8W4FEL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SQD9/entry#A0A8W4FEL2-1", "sequence": { "sequence": "MAPRPPKGLAPALLWVLSLFIGLPSPVLVQPSPPPQSSPPTEPHPCHTCRGLVDSFYKGLERTIRDNFGGGNTAWEEEKLSKYKDSETRLVEVLEGVCSKSDFECHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPSGTFGPTCLPCPGGTERPCGGYGQCEGEGTRGGSGRCDCQAGYGEACGQCGLGYFEAERNSSHLVCSACFGPCARCSGPEESNCLQCKKGWALHHLKCVDCAKACLGCMGAGPGRCKKCSPGYQQVGSKCLDVDECETAVCPGENEKCENTEGSYRCICAEGYKQIEGICVKEQIPESAGFFSEMTEDELVVLQQMFFGVIICALATLAAKGDLVFTAIFIGAVAAMTGYWLSERSDRVLEGFIKGR", "length": 391, "header": "tr|A0A8W4FEL2-1|F1SQD9_PIG Computationally mapped isoform of protein disulfide-isomerase OS=Sus scrofa OX=9823 GN=CRELD1 PE=1 SV=1 CANONICAL=F1SQD9-1" }, "locus": { "chromosome": "13", "start_pos": 66202955, "end_pos": 66195464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095632.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095632.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077854.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077854.1" } ] } }, { "isoform_ac": "A0A8W4FJ22-1", "url": "https://www.uniprot.org/uniprotkb/F1SQD9/entry#A0A8W4FJ22-1", "sequence": { "sequence": "MAPRPPKGLAPALLWVLSLFIGLPSPVLVQPSPPPQSSPPTEPHPCHTCRGLVDSFYKGLERTIRDNFGGGNTAWEEEKLSKYKDSETRLVEVLEGVCSKSDFECHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPSGTFGPTCLPCPGGTERPCGGYGQCEGEGTRGGSGRCDCQAGYGEACGQCGLGYFEAERNSSHLVCSACFGPCARCSGPEESNCLQCKKGWALHHLKCVDIDECGTERASCGADQFCVNTEGSYECRDCAKACLGCMGAGPGRCKKCSPGYQQVGSKCLGECPAPRRASPATIDVDECETAVCPGENEKCENTEGSYRCICAEGYKQIEGICVKEQIPESAGFFSEMTEDELVVLQQMFFGVIICALATLAAKGDLVFTAIFIGAVAAMTGYWLSERSDRVLEGFIKGR", "length": 433, "header": "tr|A0A8W4FJ22-1|F1SQD9_PIG Computationally mapped isoform of protein disulfide-isomerase OS=Sus scrofa OX=9823 GN=CRELD1 PE=1 SV=1 CANONICAL=F1SQD9-1" }, "locus": { "chromosome": "13", "start_pos": 66202955, "end_pos": 66195464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106340.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106340.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078884.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078884.1" } ] } }, { "isoform_ac": "F1SQD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SQD9/entry#F1SQD9-1", "sequence": { "sequence": "MAPRPPKGLAPALLWVLSLFIGLPSPVLVQPSPPPQSSPPTEPHPCHTCRGLVDSFYKGLERTIRDNFGGGNTAWEEEKLSKYKDSETRLVEVLEGVCSKSDFECHRLLELSEELVESWWFHKQQEAPDLFQWLCSDSLKLCCPSGTFGPTCLPCPGGTERPCGGYGQCEGEGTRGGSGRCDCQAGYGEACGQCGLGYFEAERNSSHLVCSACFGPCARCSGPEESNCLQCKKGWALHHLKCVDIDECGTERASCGADQFCVNTEGSYECRDCAKACLGCMGAGPGRCKKCSPGYQQVGSKCLDVDECETAVCPGENEKCENTEGSYRCICAEGYKQIEGICVKEQIPESAGFFSEMTEDELVVLQQMFFGVIICALATLAAKGDLVFTAIFIGAVAAMTGYWLSERSDRVLEGFIKGR", "length": 419, "header": "tr|F1SQD9-1|F1SQD9_PIG Isoform 1 of protein disulfide-isomerase OS=Sus scrofa OX=9823 GN=CRELD1 PE=1 SV=3 CANONICAL=F1SQD9-1" }, "locus": { "chromosome": "13", "start_pos": 66202955, "end_pos": 66195464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012651.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012651.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012319.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012319.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FEL2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FEL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SQD9", "url": "https://www.uniprot.org/uniprotkb/F1SQD9" } ], "pmid": "" }, { "name": "protein disulfide isomerase activity", "id": "GO:0003756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003756", "evidence": [ { "database": "UniProtKB", "id": "F1SQD9", "url": "https://www.uniprot.org/uniprotkb/F1SQD9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SQD9", "url": "https://www.uniprot.org/uniprotkb/F1SQD9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SQD9", "url": "https://www.uniprot.org/uniprotkb/F1SQD9" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SQD9", "url": "https://www.uniprot.org/uniprotkb/F1SQD9" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SQD9", "url": "https://www.uniprot.org/uniprotkb/F1SQD9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQD9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 419, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQD9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQD9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD9" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 304, "end_pos": 343, "start_aa": "Asp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 204, "end_pos": 206 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQP9-1", "uniprot_ac": "F1SQP9", "uniprot_id": "F1SQP9_PIG", "mass": { "chemical_mass": 88728.0, "monoisotopic_mass": 88728.0 }, "refseq": { "ac": "XP_003126761", "name": "vezatin isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126761" }, "gene_names": [ { "name": "VEZT", "type": "recommended", "evidence": [ { "id": "F1SQP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQP9" } ] }, { "name": "VEZT", "type": "synonym", "evidence": [ { "id": "XP_003126761", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126761" } ] } ], "protein_names": [ { "name": "Vezatin", "type": "recommended", "evidence": [ { "id": "F1SQP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQP9/entry#names_and_taxonomy" } ] }, { "name": "vezatin isoform X5", "type": "synonym", "evidence": [ { "id": "XP_003126761", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126761" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQP9", "url": "https://www.uniprot.org/uniprotkb/F1SQP9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VEZT", "url": "https://www.uniprot.org/uniprotkb/F1SQP9", "locus": { "chromosome": "5", "start_pos": 88031979, "end_pos": 88104742, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000900", "url": "https://www.ensembl.org/id/ENSSSCG00000000900" } ] } } ], "crossref": [ { "id": "F1SQP9", "url": "https://alphafold.ebi.ac.uk/entry/F1SQP9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000900", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000900", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517653", "url": "https://www.ncbi.nlm.nih.gov/gene/100517653", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517653", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517653", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQP9", "url": "https://www.orthodb.org/?gene=F1SQP9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15989", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15989", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15989:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15989:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12632", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12632", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126761", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126761", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FHJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQP9", "url": "https://www.uniprot.org/uniprotkb/F1SQP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQP9-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTPDFDEEVVFENSPLYQYLQDLGHTDFEICSSLSPKPEKCTETEGQPKPPARALPKQGILLKVAEIIKSWILAQCNKNDDLLHKLDIGFRLDSLNTILQQEVLLQEDVELIELLDPSILSAGQSQQQENGYLPTLGSLATPNIWDVSMLFAFISLLIMLPTWWIVSSWLVWGMILSVYLIIRALRLWRTARLQITLKKYIVHLEDITTNSRAFTNLVRKALRLIQETEVISRGFTLVSAACPFNKAGQHPSQHLIGLRKAVYRTVRANFQAARLATLYMLKNYPLNSESDNVTNYICVVPFKELGLGLSEEQISEEEAHNLTDGFSLPALKVLFQLWVAQSSEFFRRLSLLLSTTNSPPGPLLTPALSPHRILSDVTQGLPHAHSACLEELKRSYEFYRYFETQHQSVPQRLSKTQQKSRELNNVHTAVRSLQLHLKALLNEVIILEDELEKLVCTKETQELVSEAYQILDQKFKLIQPHVQASNNCWEEAISQVDKLLRRNTDKKGKAEMACENPRCTMVPLMQPTLHIADKDPIPEEQELEAYVDDIDMDSDFGKDDFYYLSQEDRERQKREHEESKRVLQELKSVLGFKASEAERQKWKQLLFSDHAVLKSFSPVDPVEPISNSESSVDSDMGKVGKNDTEEESSKPSTTDNEISSRTEYLCENPLDGQNKDNSANEVFFQGAEERVCYQCESEDESQQADVGGLAPSQPTPRDSSQPSIKQRLAQLQLSPDFTFTAGLAAEVAARSLSFATMQEQTFGDEEEEQIIQENKNEVEEK", "length": 781, "header": "tr|F1SQP9-1|F1SQP9_PIG Isoform 1 of Vezatin OS=Sus scrofa OX=9823 GN=VEZT PE=3 SV=4 CANONICAL=F1SQP9-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FHJ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP9/entry#A0A8W4FHJ5-1", "sequence": { "sequence": "MTPDFDEEVVFENSPLYQYLQDLGHTDFEICSSLSPKPEKCTETEGQPKPPARALPKYLGYSSPSVNQGILLKVAEIIKSWILAQCNKNDDLLHKLDIGFRLDSLNTILQQEVLLQEDVELIELLDPSILSAGQSQQQENGYLPTLGSLATPNIWDVSMLFAFISLLIMLPTWWIVSSWLVWGMILSVYLIIRALRLWRTARLQITLKKYIVHLEDITTNSRAFTNLVRKALRLIQETEVISRGFTLLLDRVSAACPFNKAGQHPSQHLIGLRKAVYRTVRANFQAARLATLYMLKNYPLNSESDNVTNYICVVPFKELGLGLSEEQISEEEAHNLTDGFSLPALKVLFQLWVAQSSEFFRRLSLLLSTTNSPPGPLLTPALSPHRILSDVTQGLPHAHSACLEELKRSYEFYRYFETQHQSVPQRLSKTQQKSRELNNVHTAVRSLQLHLKALLNEVIILEDELEKLVCTKETQELVSEAYQILDQKFKLIQPHVQASNNCWEEAISQVDKLLRRNTDKKGKAEMACENPRCTMVPLMQPTLHIADKDPIPEEQELEAYVDDIDMDSDFGKDDFYYLSQEDRERQKREHEESKRVLQELKSVLGFKASEAERQKWKQLLFSDHAVLKSFSPVDPVEPISNSESSVDSDMGKVGKNDTEEESSKPSTTDNEISSRTEYLCENPLDGQNKDNSANEVFFQGAEERVCYQCESEDESQQADVGGLAPSQPTPRDSSQPSIKQRLAQLQLSPDFTFTAGLAAEVAARSLSFATMQEQTFGDEEEEQIIQENKNEVEEK", "length": 795, "header": "tr|A0A8W4FHJ5-1|F1SQP9_PIG Computationally mapped isoform of Vezatin OS=Sus scrofa OX=9823 GN=VEZT PE=3 SV=1 CANONICAL=F1SQP9-1" }, "locus": { "chromosome": "5", "start_pos": 88104636, "end_pos": 88036214, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097777.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097777.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077782.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077782.1" } ] } }, { "isoform_ac": "F1SQP9-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP9/entry#F1SQP9-1", "sequence": { "sequence": "MTPDFDEEVVFENSPLYQYLQDLGHTDFEICSSLSPKPEKCTETEGQPKPPARALPKQGILLKVAEIIKSWILAQCNKNDDLLHKLDIGFRLDSLNTILQQEVLLQEDVELIELLDPSILSAGQSQQQENGYLPTLGSLATPNIWDVSMLFAFISLLIMLPTWWIVSSWLVWGMILSVYLIIRALRLWRTARLQITLKKYIVHLEDITTNSRAFTNLVRKALRLIQETEVISRGFTLVSAACPFNKAGQHPSQHLIGLRKAVYRTVRANFQAARLATLYMLKNYPLNSESDNVTNYICVVPFKELGLGLSEEQISEEEAHNLTDGFSLPALKVLFQLWVAQSSEFFRRLSLLLSTTNSPPGPLLTPALSPHRILSDVTQGLPHAHSACLEELKRSYEFYRYFETQHQSVPQRLSKTQQKSRELNNVHTAVRSLQLHLKALLNEVIILEDELEKLVCTKETQELVSEAYQILDQKFKLIQPHVQASNNCWEEAISQVDKLLRRNTDKKGKAEMACENPRCTMVPLMQPTLHIADKDPIPEEQELEAYVDDIDMDSDFGKDDFYYLSQEDRERQKREHEESKRVLQELKSVLGFKASEAERQKWKQLLFSDHAVLKSFSPVDPVEPISNSESSVDSDMGKVGKNDTEEESSKPSTTDNEISSRTEYLCENPLDGQNKDNSANEVFFQGAEERVCYQCESEDESQQADVGGLAPSQPTPRDSSQPSIKQRLAQLQLSPDFTFTAGLAAEVAARSLSFATMQEQTFGDEEEEQIIQENKNEVEEK", "length": 781, "header": "tr|F1SQP9-1|F1SQP9_PIG Isoform 1 of Vezatin OS=Sus scrofa OX=9823 GN=VEZT PE=3 SV=4 CANONICAL=F1SQP9-1" }, "locus": { "chromosome": "5", "start_pos": 88104636, "end_pos": 88036214, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000984.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000984.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000963.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000963.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHJ5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHJ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517653", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517653", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SQP9", "url": "https://www.uniprot.org/uniprotkb/F1SQP9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQP9", "url": "https://www.uniprot.org/uniprotkb/F1SQP9" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SQP9", "url": "https://www.uniprot.org/uniprotkb/F1SQP9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQP9", "url": "https://www.uniprot.org/uniprotkb/F1SQP9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "F1SQP9", "url": "https://www.uniprot.org/uniprotkb/F1SQP9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "myosin binding", "id": "GO:0017022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017022", "evidence": [ { "database": "UniProtKB", "id": "F1SQP9", "url": "https://www.uniprot.org/uniprotkb/F1SQP9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 642, "end_pos": 644, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQP9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 781, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQP9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQP9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQP9" }, { "id": "PF12632", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12632" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin-binding", "eco_id": "ECO_0000259", "start_pos": 150, "end_pos": 438, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 292, "end_pos": 294 }, { "start_pos": 321, "end_pos": 323 }, { "start_pos": 642, "end_pos": 644 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STN1-1", "uniprot_ac": "F1STN1", "uniprot_id": "F1STN1_PIG", "mass": { "chemical_mass": 45310.0, "monoisotopic_mass": 45310.0 }, "refseq": {}, "gene_names": [ { "name": "XKR8", "type": "recommended", "evidence": [ { "id": "F1STN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ] } ], "protein_names": [ { "name": "XK-related protein", "type": "recommended", "evidence": [ { "id": "F1STN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STN1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "XKR8", "url": "https://www.uniprot.org/uniprotkb/F1STN1", "locus": { "chromosome": "6", "start_pos": 85160234, "end_pos": 85085066, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030623", "url": "https://www.ensembl.org/id/ENSSSCG00000030623" } ] } } ], "crossref": [ { "id": "F1STN1", "url": "https://alphafold.ebi.ac.uk/entry/F1STN1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030623", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030623", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR018629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PKLWRPP", "url": "https://omabrowser.org/oma/group/PKLWRPP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16024", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16024", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16024:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16024:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09815", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09815", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "38663", "url": "https://www.rhea-db.org/rhea/38663", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FI13", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI13-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STN1-1", "url": "https://www.uniprot.org/uniprotkb/F1STN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPWSLHAVLFRDLVLGVLGTLAFLIDLGADLWAASQYVLSGRYLWAALVLALLGLASVALQFFSWVWLRTDPTGLHASQPPGQRLALLHLLQLGYLYRCVQGLQQGLLVWRQEVPSQFDLDYADFLSLDISMLRLFETFLETTPQLTLVLAIVLQSGSTEYYQWVSICTSFVGISWALLDYHRALRTCLPFKPLLGLGASAIYFLWNLLLLWPRVLVVALFSALFPRYVALHFLGLWLVLLLWVWLQGTDFMPDPCSEWLYRATVATILYFSWFNVAEGHTRGRAAIHLGFLLSDSLLIVVTWATHGAWLPSGLLLQVLLPVAGVCSLLGLALRLVYYRWLHPSCHWEPDRVDGTRGLYSLEGRRLPQNRRMVQLAKNFFPRDRDKSALPWKGEVNGVL", "length": 399, "header": "tr|F1STN1-1|F1STN1_PIG Isoform 1 of XK-related protein OS=Sus scrofa OX=9823 GN=XKR8 PE=3 SV=3 CANONICAL=F1STN1-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FI13-1", "url": "https://www.uniprot.org/uniprotkb/F1STN1/entry#A0A8W4FI13-1", "sequence": { "sequence": "MPWSLHAVLFRDLVLGVLGTLAFLIDLGADLWAASQYVLSGRYLWAALVLALLGLASVALQFFSWVWLRTDPTGLHASQPPGQRLALLHLLQLGYLYRCVQGLQQGLLVWRQEVPSQFDLDYADFLSLDISMLRLFETFLETTPQLTLVLAIVLQSGSTEYYQWVSICTSFVDNGKKAGPHKSGLQGRLAQESCQSKVIEKYTADSPMLITYNENSSSYSHYHSFN", "length": 226, "header": "tr|A0A8W4FI13-1|F1STN1_PIG Computationally mapped isoform of XK-related protein OS=Sus scrofa OX=9823 GN=XKR8 PE=3 SV=1 CANONICAL=F1STN1-1" }, "locus": { "chromosome": "6", "start_pos": 85159168, "end_pos": 85085098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105602.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105602.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079085.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079085.1" } ] } }, { "isoform_ac": "F1STN1-1", "url": "https://www.uniprot.org/uniprotkb/F1STN1/entry#F1STN1-1", "sequence": { "sequence": "MPWSLHAVLFRDLVLGVLGTLAFLIDLGADLWAASQYVLSGRYLWAALVLALLGLASVALQFFSWVWLRTDPTGLHASQPPGQRLALLHLLQLGYLYRCVQGLQQGLLVWRQEVPSQFDLDYADFLSLDISMLRLFETFLETTPQLTLVLAIVLQSGSTEYYQWVSICTSFVGISWALLDYHRALRTCLPFKPLLGLGASAIYFLWNLLLLWPRVLVVALFSALFPRYVALHFLGLWLVLLLWVWLQGTDFMPDPCSEWLYRATVATILYFSWFNVAEGHTRGRAAIHLGFLLSDSLLIVVTWATHGAWLPSGLLLQVLLPVAGVCSLLGLALRLVYYRWLHPSCHWEPDRVDGTRGLYSLEGRRLPQNRRMVQLAKNFFPRDRDKSALPWKGEVNGVL", "length": 399, "header": "tr|F1STN1-1|F1STN1_PIG Isoform 1 of XK-related protein OS=Sus scrofa OX=9823 GN=XKR8 PE=3 SV=3 CANONICAL=F1STN1-1" }, "locus": { "chromosome": "6", "start_pos": 85092270, "end_pos": 85085098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031602.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031602.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025057.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025057.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FI13", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI13" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1BD69-1", "protein_name": "XK-related protein", "gene_name": "XKR8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPWSPRAVLLRDLVLGILGTLAFLIDLGADLWAASQYVLSGRYLWAALVLALLGLASVALQLFSWIWLHSDVSSPLAPKPPGRHLALLHLLQLGYLYRCVQGLQQGLLVWRQEAPSEFDLAYADFLSLDISMLRLFETFLETTPQLTLVLAIILQSGSAEYYQWVSICTSFVGISWALLDYHRALRTCLPAKLLLGPGASVIYFLWNLLLLWPRVLVVALFSALFPRYVALHFLGLWLVFLFWVWLQGTDFMPGPHSEWLYRATVATILYFSWFNVAEGHTRGRATIHLVFLLNDSLLLVVAWATQSAWLPSGRLLQSLLPAAGVCFLLGLALRLAYYCWLHPSRRWEPDQVDGTWGLHSLEERQLLQNRRMAHLAKNFFPKARDEAVLPWKGEMNGILKAGSDPARET", "length": 409 }, "evidence": [ { "id": "F1STN1", "url": "https://omabrowser.org/oma/group/F1STN1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9H6D3-1", "protein_name": "XK-related protein 8", "gene_name": "XKR8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPWSSRGALLRDLVLGVLGTAAFLLDLGTDLWAAVQYALGGRYLWAALVLALLGLASVALQLFSWLWLRADPAGLHGSQPPRRCLALLHLLQLGYLYRCVQELRQGLLVWQQEEPSEFDLAYADFLALDISMLRLFETFLETAPQLTLVLAIMLQSGRAEYYQWVGICTSFLGISWALLDYHRALRTCLPSKPLLGLGSSVIYFLWNLLLLWPRVLAVALFSALFPSYVALHFLGLWLVLLLWVWLQGTDFMPDPSSEWLYRVTVATILYFSWFNVAEGRTRGRAIIHFAFLLSDSILLVATWVTHSSWLPSGIPLQLWLPVGCGCFFLGLALRLVYYHWLHPSCCWKPDPDQVDGARSLLSPEGYQLPQNRRMTHLAQKFFPKAKDEAASPVKG", "length": 395 }, "evidence": [ { "id": "F1STN1", "url": "https://omabrowser.org/oma/group/F1STN1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "pmid": "" }, { "name": "engulfment of apoptotic cell", "id": "GO:0043652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043652", "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "pmid": "" }, { "name": "neutrophil clearance", "id": "GO:0097350", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097350", "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "pmid": "" }, { "name": "synapse pruning", "id": "GO:0098883", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098883", "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "pmid": "" }, { "name": "positive regulation of myoblast differentiation", "id": "GO:0045663", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045663", "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "pmid": "" }, { "name": "phosphatidylserine exposure on apoptotic cell surface", "id": "GO:0070782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070782", "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "pmid": "" }, { "name": "apoptotic process involved in development", "id": "GO:1902742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902742", "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phospholipid scramblase activity", "id": "GO:0017128", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017128", "evidence": [ { "database": "UniProtKB", "id": "F1STN1", "url": "https://www.uniprot.org/uniprotkb/F1STN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "38663", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phospho-L-serine(in) = a 1,2-diacyl-sn-glycero-3-phospho-L-serine(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "38663", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/38663" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STN1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 399, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STN1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STN1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR48-1", "uniprot_ac": "F1SR48", "uniprot_id": "F1SR48_PIG", "mass": { "chemical_mass": 18576.0, "monoisotopic_mass": 18576.0 }, "refseq": {}, "gene_names": [ { "name": "PPP1R1A", "type": "recommended", "evidence": [ { "id": "F1SR48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR48" } ] } ], "protein_names": [ { "name": "Protein phosphatase 1 regulatory subunit 1A", "type": "recommended", "evidence": [ { "id": "F1SR48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR48/entry#names_and_taxonomy" } ] }, { "name": "Protein phosphatase inhibitor 1", "type": "synonym", "evidence": [ { "id": "F1SR48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR48/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Inhibitor of protein-phosphatase 1. This protein may be important in hormonal control of glycogen metabolism. Hormones that elevate intracellular cAMP increase I-1 activity in many tissues. I-1 activation may impose cAMP control over proteins that are not directly phosphorylated by PKA. Following a rise in intracellular calcium, I-1 is inactivated by calcineurin (or PP2B). Does not inhibit type-2 phosphatases.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FIJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIJ2#function" }, { "database": "UniProtKB", "id": "ARBA00037661", "url": "https://www.uniprot.org/uniprotkb/ARBA00037661#function" }, { "database": "UniProtKB", "id": "A0A5G2R0B0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0B0#function" }, { "database": "UniProtKB", "id": "F1SR48", "url": "https://www.uniprot.org/uniprotkb/F1SR48#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR48", "url": "https://www.uniprot.org/uniprotkb/F1SR48" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP1R1A", "url": "https://www.uniprot.org/uniprotkb/F1SR48", "locus": { "chromosome": "5", "start_pos": 19753847, "end_pos": 19763269, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000298", "url": "https://www.ensembl.org/id/ENSSSCG00000000298" } ] } } ], "crossref": [ { "id": "F1SR48", "url": "https://alphafold.ebi.ac.uk/entry/F1SR48", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000298", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000298", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15417", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15417", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15417:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15417:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05395", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05395", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R0B0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0B0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0B0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0B0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FIJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR48", "url": "https://www.uniprot.org/uniprotkb/F1SR48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR48-1", "url": "https://www.uniprot.org/uniprotkb/F1SR48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQDHSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEVDEDRIPNPLLKPTLSMSPRQQKKVTRTTPTMKELQMMVEHHLGQQQPGEEPEGAAESTGTQESCPPGITTTGAESRPGATGKADKPAESIPQERGSEKPSTEEPSTQPPWDSQGANSVSE", "length": 170, "header": "tr|F1SR48-1|F1SR48_PIG Isoform 1 of Protein phosphatase 1 regulatory subunit 1A OS=Sus scrofa OX=9823 GN=PPP1R1A PE=1 SV=5 CANONICAL=F1SR48-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R0B0-1", "url": "https://www.uniprot.org/uniprotkb/F1SR48/entry#A0A5G2R0B0-1", "sequence": { "sequence": "MRELQGLQPHGSLHFQASRGKEKTTCPKSPWTAFNKNQLYWQHDHRTEIRRRRPTPATLVLTSDQSSPEVDEDRIPNPLLKPTLSMSPRQQKKVTRTTPTMKELQMMVEHHLGQQQPGEEPEGAAESTGTQESCPPGITTTGAESRPGATGKADKPAESIPQERGSEKPSTEEPSTQ", "length": 177, "header": "tr|A0A5G2R0B0-1|F1SR48_PIG Computationally mapped isoform of Protein phosphatase 1 regulatory subunit 1A OS=Sus scrofa OX=9823 GN=PPP1R1A PE=1 SV=1 CANONICAL=F1SR48-1" }, "locus": { "chromosome": "5", "start_pos": 19761866, "end_pos": 19754567, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071043.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071043.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063945.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063945.1" } ] } }, { "isoform_ac": "A0A8W4FIJ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SR48/entry#A0A8W4FIJ2-1", "sequence": { "sequence": "MEQDHSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEGQVPTCALCPSQPTLSMSPRQQKKVTRTTPTMKELQMMVEHHLGQQQPGEEPEGAAESTGTQESCPPGITTTGAESRPGATGKADSTFRLGRAHQPRGRPALPLMGRGPAVARNRLESTDSGRVQHVFASLSLSLLNDTTPSQPGLQSSVLYAGEPALMGAKLPGRNPGSASLPAQRP", "length": 227, "header": "tr|A0A8W4FIJ2-1|F1SR48_PIG Computationally mapped isoform of Protein phosphatase 1 regulatory subunit 1A OS=Sus scrofa OX=9823 GN=PPP1R1A PE=1 SV=1 CANONICAL=F1SR48-1" }, "locus": { "chromosome": "5", "start_pos": 19763102, "end_pos": 19756237, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096096.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096096.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078133.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078133.1" } ] } }, { "isoform_ac": "F1SR48-1", "url": "https://www.uniprot.org/uniprotkb/F1SR48/entry#F1SR48-1", "sequence": { "sequence": "MEQDHSPRKIQFTVPLLEPHLDPEAAEQIRRRRPTPATLVLTSDQSSPEVDEDRIPNPLLKPTLSMSPRQQKKVTRTTPTMKELQMMVEHHLGQQQPGEEPEGAAESTGTQESCPPGITTTGAESRPGATGKADKPAESIPQERGSEKPSTEEPSTQPPWDSQGANSVSE", "length": 170, "header": "tr|F1SR48-1|F1SR48_PIG Isoform 1 of Protein phosphatase 1 regulatory subunit 1A OS=Sus scrofa OX=9823 GN=PPP1R1A PE=1 SV=5 CANONICAL=F1SR48-1" }, "locus": { "chromosome": "5", "start_pos": 19763102, "end_pos": 19753982, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000319.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000319.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000313.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000313.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FIJ2", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FIJ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SR48", "url": "https://www.uniprot.org/uniprotkb/F1SR48" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SR48", "url": "https://www.uniprot.org/uniprotkb/F1SR48" } ], "pmid": "" }, { "name": "glycogen metabolic process", "id": "GO:0005977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005977", "evidence": [ { "database": "UniProtKB", "id": "F1SR48", "url": "https://www.uniprot.org/uniprotkb/F1SR48" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SR48", "url": "https://www.uniprot.org/uniprotkb/F1SR48" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein phosphatase inhibitor activity", "id": "GO:0004864", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004864", "evidence": [ { "database": "UniProtKB", "id": "F1SR48", "url": "https://www.uniprot.org/uniprotkb/F1SR48" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SR48-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 170, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SR48-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SR48" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST22-1", "uniprot_ac": "F1ST22", "uniprot_id": "F1ST22_PIG", "mass": { "chemical_mass": 511677.0, "monoisotopic_mass": 511677.0 }, "refseq": {}, "gene_names": [ { "name": "DNAH2", "type": "recommended", "evidence": [ { "id": "F1ST22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ] } ], "protein_names": [ { "name": "Dynein axonemal heavy chain 2", "type": "synonym", "evidence": [ { "id": "F1ST22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST22/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNAH2", "url": "https://www.uniprot.org/uniprotkb/F1ST22", "locus": { "chromosome": "12", "start_pos": 53086744, "end_pos": 52992843, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017963", "url": "https://www.ensembl.org/id/ENSSSCG00000017963" } ] } } ], "crossref": [ { "id": "F1ST22", "url": "https://alphafold.ebi.ac.uk/entry/F1ST22", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017963", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017963", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00009", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00009", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013602", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013602", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024317", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024317", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035706", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035706", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041228", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041228", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041658", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041658", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042228", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042228", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056759", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056759", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46532", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46532", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46532:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46532:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08385", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08385", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08393", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08393", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12774", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12774", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12775", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12775", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12777", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12777", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17852", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17852", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18198", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18198", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18199", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18199", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25007", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25007", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FM79", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FM79-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST22-1", "url": "https://www.uniprot.org/uniprotkb/F1ST22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFTSIGIDEISWGGNSLSFPLRSILFLLVEARETSFFFFSFLWLPLCSWARGQIGAAAEAYPTATETLDASHICCSLQQCRVLNPLSKARDRTHILTEMALENLTVFVLEKLDSCHSVHPQLSRPQMTPPNSVPSLRPAPLLQKPLFLSRAVLTGLADATWTEEHSATLEHFAQDPSEPILTIFIDPCVGLKLDLGMPVQTQNQIVYFIRQAPVPITPENFEATVQFGTVRGSYVPALLRLLSGVFAPQIFTNSTWPESIRNHFASHLHRFLACLTDTRYKLEGHTVLYIPTEAVNLKPEAVVKDKELVQRLETAMVHWTRQIKEVLSAQESVETGENLGPLEEIEFWRNRCTDLSGISKQLVKPGVKHIESILRLAKSSYLAPFMKLAQQIQDGSRQAQSNLTFLSILKEPYQELAHMQPKDIASKLPRLISLIRIIWVNSPHYNTRERLTSLFRKVCDCQYHFARWEDGKQGPLPCFFGAQGPQITRNLLEIEDIFHKNLHVLRAVRGGILDVKNTSWHEDYNRFRAGVKDLEVMTQNLITSAFELVRDVEHGVLLLDTFHRLAAREAIKRTYDKKAVDLYMLFNGELALVNRELNKKWPYLEPYMAQHSGQAHWLRVLRRRIDRVMNCLSNAHFLPHIGTGEESVHTYQQMVQAIDELVRKTFQDWTSTLDKDCVRRLDTPLLRISQEKAGMLDVNFDKSLLILFVEIDYWERLLFETPHYVVNVAERSEDLRILRENLLLVARDYNRIIAMLSPDEQALFKERIRFLDKKIHPGLKKLHWALKGASAFFITECRIHASKVQAIVNEFKASTLTIGWRAQEISETLLVRISGKRVYRDLEFEEDQREHRAAVQQKLMSLHQDVVAIMTNSYEVFKNDGPEIQQQWLLYTIRLDRMMEDALRLNVKWSLLELSKAINGDGKTTPNPLFRVLVILKNDMQGGVAQVEFSPTLQTLASVVNDIGSHLFSTIAVFRHLPEILIKRKFQRDPICTIVERDEDIKKIQAQISSGMSSNAGLLQNYLKTWDTYREIWEINKDSFIRRYQRLNPPVSSFDADIARYTEVANNVQKEETVLNIQFVLLDCSQLKFSLVQHCNEWQNKFTTLLKEMAARRLLELHAYLQENSEKISRPPQTLEELGVSLQLMDTLQHDLPNLETQIPPIHEQFTILEKYEVPVQDSVLEMLDGLNGEWVTFQQTLLDSEQMLKRHKEKFKTGLIHSADDFKKKAHNLLEEFEVKGTLLSLCLDPVFQTTPLALWLEGSSLAQGISSFLIPTPMSHPFRILKQRLELDALQQVWEITRDWEENWNQWKTGRFLTLQTETMESMAHGLFRRLARLAKEYKDRNWEIIETTRSKIEQFKRTMPLISDLRNPALRERHWDQVRDEVRREFNQESESFTLEQIVELGMDQHVEKIGEISASATKELAIELALQNIAKTWDVVQLDIVPYKDKGHHRLRGTEEVFQALEDNQVALSNMKASRFVKAFEKEVDHWERCLSLILEVIEMVLTVQRQWMYLENIFLGEDIRKQLPNESGLFDQVNSNWKSIMDRMNRDPNALRSTHYPGLLDTLVEMNTVLEDIQKSLDMYLETKRQIFPRFYFLSNDDLLEILGQSRSPEAVQPHLKKCFDNIKLLRMQKVGGPSSKWEAAGMFSGDGEYVDFLHPVLLEGPVEAWLGDVERTMRATLRDLLRNCRLALKKFLNKRDKWVKEWAGQLVITASQIQWTADVTKCLLTAKERGDRKILKVMKKKQVSILNKYSEAIRGNLTKIMRLKIVALVTIEVHARDVLEKLYKSGLMDVSSFDWLSQLRFYWEKDLDDCMIRQTNTQFQYGYEYLGNSGRLVITPLTDRCYMTLTTALHLHRGGSPKGPAGTGKTETVKDLGKALGIYVIVVNCSEGLDYKSMGRMYSGLAQTGAWGCFDEFNRINVEVLSVVAQQILSILSALAAGLTRFYFEGFEINLMWSCGIFITMNPGYAGRTELPDNLKSMFRPIAMVVPDSTLIAEIILFGEGFGNCKVLAKKVYTLYSLAVQQLSRQDHYDFGLRALTSLLRYAGKKRRLQPGLSDEEVLLLSMRDMNIAKLTSADVPLFSAIMQDLFPSVELPVIDYGKLRETIEQETQDLGLQASPFTVTKVLQLYETKSSRHATMIVGCTGSDPNFNLVKEFPLNPKALSLGELYGEYDLNTNEWTDGVLSSVMRAACVPESPRGREKWILFDGPVDTLWIESMNSVMDDNKVLTLINGERIAMPEQVSLLFEVENLAVASPATVSRCGMVYTDYADLGWKPYVQSWLEKRPKVAPVLSKCFDLSASTTLWFSKQNQEGRETPSLCDAPCLTDSGYVPFSSSVQMNPADGENFASMVELMFVFSMIWSVCAAVDEEGRKRIDSCLREMEGSFPNKDTVYEYFVDPKMRSWASFEDKLPKSWRYPPNCPFYKIMVPTVDTVRYNYLVSALVASQKPVLLVGPVGTGKTSIAQSVLQSLPSSQWSVLTVNMSAQTTSNNVQSIIESRVEKRTKGVYVPFGGKSMITFMDDLNMPAKDMFGSQPPLELIRLWIDYGFWYDRTKQTIKYIRDMFLMAAMGPPGGGRTVISSRLQSRFNIINMAFPTEPQIIRIFGTMINQKLQDFEEEVKPIGNVVTEATLDLYNTVVQRFLPTPAKIHYLFNLRDISKVFQGMLRASKDFHDTKASITRLWIHECFRVFSDRLVDVADTEAFVGIISDKLGSFFDLTFHNLCPNKRSPIFGDFLREPKVYEDLTDLSALKTAMETALHEYNLSPAVVPMKLVLFREAVEHITRIVRVIGQPRGNMLLVGIGGSGRQSLARLASSICDYITFQIEVTKHYRKQEFREDIKRLYRQAGVELKATSFLFVDTQIADPVFLEDINNILSSGEVPNLYKTDEFEEIQAHIIEQARAEQVPESSDSLFAYLIERVRNNLHIILCLSPVGDPFRNWIRQYPALVNCTTINWFSEWPREALLEVAEKYLLGADLGTQENIHRKVAQIFVTMHWSVAQYSQKMLLELRRHNYVTPTNYLELVSGYKKLLAEKRQELLDQANKLRTGLFKIDETREKVEVMSLELEDAKKKVAEFQKQCEEYLVIIVQQKREADEQQKAVTANSEKIAIEEVKCQALADNAQKDLEEALPALEEAMRALESLNKKDIGEIKSYGRPPAQVEMVLQAVMILRGNEPTWAEAKRQLGEQNFIKSLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVEPKRVRLNAALAQLQEKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEELRKKSEEMETKLARAGMLVSGLAGEKARWEETVKGLEEDLGYLVGDCLLAAAFLSYMGPFLTNYRDEIVNQIWIRKIRELQVPCSPRFTFDNFLSNPTKVRDWNIQGLPSDAFSTENGIIVTRGNRWALMIDPQAQALKWIKNMEGSQGLQIIDLQMSDYLRILEDAIQFGHPVLLQNVQEYLDPTLNPVLNKSVARIGGRLLMRIGDKEVEYNTSFRFYITTKLSNPHYSPETSAKTTIVNFAVKEQGLEAQLLGIVVRKERPELEEQKDSLVINIAAGKRKLKELEDEILRLLNEATGSLLDDVQLVNALRTSKITATEVTEQLETSETTEINIDLAREAYRPCAQRASVLFFVLNDMGRIDPMYQFSLDAYISLFILSIDKSHRSNKLEDRIDYLNEYHTYAVYRYTCRTLFERHKLLFSFQMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNPCTSWLADAYWDNITELDKLTNFHGLMNSFEQYPRDWHLWYTNATPEKAMLPGEWENACNEMQRMLIVRSLRQDRVAFCVTSFIISNLGSRFVEPPVLNMKSVMEDSAPRTPLVFILSPGVDPTSGLLQLAEHTGMAQRFHALSLGQGQAPIAARLLREGVIQGHWVFLANCHLSLSWMPNLDKLVEQLQVEDPHPSFRLWLSSSPHPDFPISILQASIKMTTEPPKGLKANMTRLYQLMTEPQFSRCSKPAKYKKLLFALCFFHSVLLERKKFLQLGWNIIYGFNDSDFEVSENLLSLYLDEYEETPWDALKYLIAGVNYGGHVTDDWDRRLLTTYINDYFCDPSLSTPSYRLSVLENYFIPKDGSLASYKEYISMLPSMDPPEAFGQHPNADVASQITEARTLFETLLSLQPQITPTRAGGQSREEKVLELAADVKQKIPEMIDYEGTRKLLALDPSPLNVVLLQEIQRYNKLMETILFSLTDLEKGIQGLIVMSTSLEEIFNCIFDAHVPPLWGKAYPSQKPLASWTRDLALRVEQFELWASRARPPVIFWLSGFTFPTGFLTAVLQSSARQNNISVDSLSWEFVVSTVDDSNLVYPPKDGVWVRGLYLEGAGWDRKNSCLVEAEPMQLVCLMPTIHFRPTESRKKSAKGMYSCPCYYYPNRAGSSDRASFVIGIDLRSGTMPSDHWIKRGTALLMSLDS", "length": 4469, "header": "tr|F1ST22-1|F1ST22_PIG Isoform 1 of Dynein axonemal heavy chain 2 OS=Sus scrofa OX=9823 GN=DNAH2 PE=3 SV=5 CANONICAL=F1ST22-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FM79-1", "url": "https://www.uniprot.org/uniprotkb/F1ST22/entry#A0A8W4FM79-1", "sequence": { "sequence": "VQPTPLLSATERDAELSQAVLIGASDSLTCHGWAWRLNSDLLPSMQTQNQIVYFIRQAPVPITPENFEATVQFGTVRGSYVPALLRLLSGVFAPQIFTNSTWPESIRNHFASHLHRFLACLTDTRYKLEGHTVLYIPTEAVNLKPEAVVKDKELVQRLETAMVHWTRQIKEVLSAQESVETGENLGPLEEIEFWRNRCTDLSGISKQLVKPGVKHIESILRLAKSSYLAPFMKLAQQIQDGSRQAQSNLTFLSILKEPYQELAHMQPKDIASKLPRLISLIRIIWVNSPHYNTRERLTSLFRKVCDCQYHFARWEDGKQGPLPCFFGAQGPQITRNLLEIEDIFHKNLHVLRAVRGGILDVKNTSWHEDYNRFRAGVKDLEVMTQNLITSAFELVRDVEHGVLLLDTFHRLAAREAIKRTYDKKAVDLYMLFNGELALVNRELNKKWPYLEPYMAQHSGQAHWLRVLRRRIDRVMNCLSNAHFLPHIGTGEESVHTYQQMVQAIDELVRKTFQDWTSTLDKDCVRRLDTPLLRISQEKAGMLDVNFDKSLLILFVEIDYWERLLFETPHYVVNVAERSEDLRILRENLLLVARDYNRIIAMLSPDEQALFKERIRFLDKKIHPGLKKLHWALKGASAFFITECRIHASKVQAIVNEFKASTLTIGWRAQEISETLLVRISGKRVYRDLEFEEDQREHRAAVQQKLMSLHQDVVAIMTNSYEVFKNDGPEIQQQWLLYTIRLDRMMEDALRLNVKWSLLELSKAINGDGKTTPNPLFRVLVILKNDMQGGVAQVEFSPTLQTLASVVNDIGSHLFSTIAVFRHLPEILIKRKFQRDPICTIVERDEDIKKIQAQISSGMSSNINKDSFIRRYQRLNPPVSSFDADIARYTEVANNVQKEETVLNIQFVLLDCSQLKFSLVQHCNEWQNKFTTLLKEMAARRLLELHAYLQENSEKISRPPQTLEELGVSLQLMDTLQHDLPNLETQIPPIHEQFTILEKYEVPVQDSVLEMLDGLNGEWVTFQQTLLDSEQMLKRHKEKFKTGLIHSADDFKKKAHNLLEEFEVKGTLLSLCLDPVFQTTPLALWLEGSSLAQGISSFLIPTPMSHPFRILKQRLELDALQQVWEITRDWEENWNQWKTGRFLTLQTETMESMAHGLFRRLARLAKEYKDRNWEIIETTRSKIEQFKRTMPLISDLRNPALRERHWDQVRDEVRREFNQESESFTLEQIVELGMDQHVEKIGEISASATKELAIELALQNIAKTWDVVQLDIVPYKDKGHHRLRGTEEVFQALEDNQVALSNMKASRFVKAFEKEVDHWERCLSLILEVIEMVLTVQRQWMYLENIFLGEDIRKQLPNESGLFDQVNSNWKSIMDRMNRDPNALRSTHYPGLLDTLVEMNTVLEDIQKSLDMYLETKRQIFPRFYFLSNDDLLEILGQSRSPEAVQPHLKKCFDNIKLLRMQKVGGPSSKWEAAGMFSGDGEYVDFLHPVLLEGPVEAWLGDVERTMRATLRDLLRNCRLALKKFLNKRDKWVKEWAGQLVITASQIQWTADVTKCLLTAKERGDRKILKVMKKKQVSILNKYSEAIRGNLTKIMRLKIVALVTIEVHARDVLEKLYKSGLMDVSSFDWLSQLRFYWEKDLDDCMIRQTNTQFQYGYEYLGNSGRLVITPLTDRCYMTLTTALHLHRGGSPKGPAGTGKTETVKDLGKALGIYVIVVNCSEGLDYKSMGRMYSGLAQTGAWGCFDEFNRINVEVLSVVAQQILSILSALAAGLTRFYFEGFEINLMWSCGIFITMNPGYAGRTELPDNLKSMFRPIAMVVPDSTLIAEIILFGEGFGNCKVLAKKVYTLYSLAKRRLQPGLSDEEVLLLSMRDMNIAKLTSADVPLFSAIMQDLFPSVELPVIDYGKLRETIEQETQDLGLQASPFTVTKVLQLYETKSSRHATMIVGCTGSDPNFNLVKEFPLNPKALSLGELYGEYDLNTNEWTDGVLSSVMRAACVPESPRGREKWILFDGPVDTLWIESMNSVMDDNKVLTLINGERIAMPEQVSLLFEVENLAVASPATVSRCGMVYTDYADLGWKPYVQSWLEKRPKVAPVLSKCFDLSASTTLWFSKQNQEGRETPSLCDAPCLTDSGYVPFSSSVQMNPADGENFASMVELMFVFSMIWSVCAAVDEEGRKRIDSCLREMEGSFPNKDTVYEYFVDPKMRSWASFEDKLPKSWRYPPNCPFYKIMVPTVDTVRYNYLVSALVASQKPVLLVGPVGTGKTSIAQSVLQSLPSSQWSVLTVNMSAQTTSNNVQSIIESRVEKRTKGVYVPFGGKSMITFMDDLNMPAKDMFGSQPPLELIRLWIDYGFWYDRTKQTIKYIRDMFLMAAMGPPGGGRTVISSRLQSRFNIINMAFPTEPQIIRIFGTMINQKLQDFEEEVKPIGNVVTEATLDLYNTVVQRFLPTPAKIHYLFNLRDISKVFQGMLRASKDFHDTKASITRLWIHECFRVFSDRLVDVADTEAFVGIISDKLGSFFDLTFHNLCPNKRSPIFGDFLREPKVYEDLTDLSALKTAMETALHEYNLSPAVVPMKLVLFREAVEHITRIVRVIGQPRGNMLLVGIGGSGRQSLARLASSICDYITFQIEVTKHYRKQEFREDIKRLYRQIADPVFLEDINNILSSGEVPNLYKTDEFEEIQAHIIEQARAEQVPESSDSLFAYLIERVRNNLHIILCLSPVGDPFRNWIRQYPALVNCTTINWFSEWPREALLEVAEKYLLGADLGTQENIHRKVAQIFVTMHWSVAQYSQKMLLELRRHNYVTPTNYLELVSGYKKLLAEKRQELLDQANKLRTGLFKIDETREKVEVMSLELEDAKKKVAEFQKQCEEYLVIIVQQKREADEQQKAVTANSEKIAIEEVKCQALADNAQKDLEEALPALEEAMRALESLNKKDIGEIKSYGRPPAQVEMVLQAVMILRGNEPTWAEAKRQLGEQNFIKSLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVEPKRVRLNAALAQLQEKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEELRKKSEEMETKLARAGMLVSGLAGEKARWEETVKGLEEDLGYLVGDCLLAAAFLSYMGPFLTNYRDEIVNQIWIRKIRELQVPCSPRFTFDNFLSNPTKVRDWNIQGLPSDAFSTENGIIVTRGNRWALMIDPQAQALKWIKNMEGSQGLQIIDLQMSDYLRILEDAIQFGHPVLLQNVQEYLDPTLNPVLNKSVARIGGRLLMRIGDKEVEYNTSFRFYITTKLSNPHYSPETSAKTTIVNFAVKEQGLEAQLLGIVVRKERPELEEQKDSLVINIAAGKRKLKELEDEILRLLNEATGSLLDDVQLVNALRTSKITATEINIDLAREAYRPCAQRASVLFFVLNDMGRIDPMYQFSLDSHRSNKLEDRIDYLNEYHTYAVYRYTCRTLFERHKLLFSFQMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNPCTSWLADAYWDNITELDKLTNFHGLMNSFEQYPRARTSPPAFLLFPALPASLSLPPPPGEWENACNEMQRMLIVRSLRQDRVAFCVTSFIISNLGSRFVEPPVLNMKSVMEDSAPRTPLVFILSPGVDPTSGLLQLAEHTGMAQRFHALSLGQGQAPIAARLLREGVIQGHWVFLANCHLSLSWMPNLDKLVEQLQVEDPHPSFRLWLSSSPHPDFPISILQASIKMTTEPPKGLKANMTRLYQLMTEPQFSRCSKPAKYKKLLFALCFFHSVLLERKKFLQLGWNIIYGFNDSDFEVSENLLSLYLDEYEETPWDALKYLIAGVNYGGHVTDDWDRRLLTTYINDYFCDPSLSTPSYRLSVLENYFIPKDGSLASYKEYISMLPSMDPPEAFGQHPNADVASQITEARTLFETLLSLQPQITPTRAGGQSREEKVLELAADVKQKIPEMIDYEGTRKLLALDPSPLNVVLLQEIQRYNKLMETILFSLTDLEKGIQGLIVMSTSLEEIFNCIFDAHVPPLWGKAYPSQKPLASWTRDLALRVEQFELWASRARPPVIFWLSGFTFPTGFLTAVLQSSARQNNISVDSLSWEFVVSTVDDSNLVYPPKDGVWVRGLYLEGAGWDRKNSCLVEAEPMQLVCLMPTIHFRPTESRKKSAKGMYSCPCYYYPNRAGSSDRASFVIGIDLRSGTMPSDHWIKRGTALLMSLDS", "length": 4237, "header": "tr|A0A8W4FM79-1|F1ST22_PIG Computationally mapped isoform of Dynein axonemal heavy chain 2 OS=Sus scrofa OX=9823 GN=DNAH2 PE=3 SV=1 CANONICAL=F1ST22-1" }, "locus": { "chromosome": "12", "start_pos": 53086531, "end_pos": 53001109, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104511.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104511.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080302.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080302.1" } ] } }, { "isoform_ac": "F1ST22-1", "url": "https://www.uniprot.org/uniprotkb/F1ST22/entry#F1ST22-1", "sequence": { "sequence": "MFTSIGIDEISWGGNSLSFPLRSILFLLVEARETSFFFFSFLWLPLCSWARGQIGAAAEAYPTATETLDASHICCSLQQCRVLNPLSKARDRTHILTEMALENLTVFVLEKLDSCHSVHPQLSRPQMTPPNSVPSLRPAPLLQKPLFLSRAVLTGLADATWTEEHSATLEHFAQDPSEPILTIFIDPCVGLKLDLGMPVQTQNQIVYFIRQAPVPITPENFEATVQFGTVRGSYVPALLRLLSGVFAPQIFTNSTWPESIRNHFASHLHRFLACLTDTRYKLEGHTVLYIPTEAVNLKPEAVVKDKELVQRLETAMVHWTRQIKEVLSAQESVETGENLGPLEEIEFWRNRCTDLSGISKQLVKPGVKHIESILRLAKSSYLAPFMKLAQQIQDGSRQAQSNLTFLSILKEPYQELAHMQPKDIASKLPRLISLIRIIWVNSPHYNTRERLTSLFRKVCDCQYHFARWEDGKQGPLPCFFGAQGPQITRNLLEIEDIFHKNLHVLRAVRGGILDVKNTSWHEDYNRFRAGVKDLEVMTQNLITSAFELVRDVEHGVLLLDTFHRLAAREAIKRTYDKKAVDLYMLFNGELALVNRELNKKWPYLEPYMAQHSGQAHWLRVLRRRIDRVMNCLSNAHFLPHIGTGEESVHTYQQMVQAIDELVRKTFQDWTSTLDKDCVRRLDTPLLRISQEKAGMLDVNFDKSLLILFVEIDYWERLLFETPHYVVNVAERSEDLRILRENLLLVARDYNRIIAMLSPDEQALFKERIRFLDKKIHPGLKKLHWALKGASAFFITECRIHASKVQAIVNEFKASTLTIGWRAQEISETLLVRISGKRVYRDLEFEEDQREHRAAVQQKLMSLHQDVVAIMTNSYEVFKNDGPEIQQQWLLYTIRLDRMMEDALRLNVKWSLLELSKAINGDGKTTPNPLFRVLVILKNDMQGGVAQVEFSPTLQTLASVVNDIGSHLFSTIAVFRHLPEILIKRKFQRDPICTIVERDEDIKKIQAQISSGMSSNAGLLQNYLKTWDTYREIWEINKDSFIRRYQRLNPPVSSFDADIARYTEVANNVQKEETVLNIQFVLLDCSQLKFSLVQHCNEWQNKFTTLLKEMAARRLLELHAYLQENSEKISRPPQTLEELGVSLQLMDTLQHDLPNLETQIPPIHEQFTILEKYEVPVQDSVLEMLDGLNGEWVTFQQTLLDSEQMLKRHKEKFKTGLIHSADDFKKKAHNLLEEFEVKGTLLSLCLDPVFQTTPLALWLEGSSLAQGISSFLIPTPMSHPFRILKQRLELDALQQVWEITRDWEENWNQWKTGRFLTLQTETMESMAHGLFRRLARLAKEYKDRNWEIIETTRSKIEQFKRTMPLISDLRNPALRERHWDQVRDEVRREFNQESESFTLEQIVELGMDQHVEKIGEISASATKELAIELALQNIAKTWDVVQLDIVPYKDKGHHRLRGTEEVFQALEDNQVALSNMKASRFVKAFEKEVDHWERCLSLILEVIEMVLTVQRQWMYLENIFLGEDIRKQLPNESGLFDQVNSNWKSIMDRMNRDPNALRSTHYPGLLDTLVEMNTVLEDIQKSLDMYLETKRQIFPRFYFLSNDDLLEILGQSRSPEAVQPHLKKCFDNIKLLRMQKVGGPSSKWEAAGMFSGDGEYVDFLHPVLLEGPVEAWLGDVERTMRATLRDLLRNCRLALKKFLNKRDKWVKEWAGQLVITASQIQWTADVTKCLLTAKERGDRKILKVMKKKQVSILNKYSEAIRGNLTKIMRLKIVALVTIEVHARDVLEKLYKSGLMDVSSFDWLSQLRFYWEKDLDDCMIRQTNTQFQYGYEYLGNSGRLVITPLTDRCYMTLTTALHLHRGGSPKGPAGTGKTETVKDLGKALGIYVIVVNCSEGLDYKSMGRMYSGLAQTGAWGCFDEFNRINVEVLSVVAQQILSILSALAAGLTRFYFEGFEINLMWSCGIFITMNPGYAGRTELPDNLKSMFRPIAMVVPDSTLIAEIILFGEGFGNCKVLAKKVYTLYSLAVQQLSRQDHYDFGLRALTSLLRYAGKKRRLQPGLSDEEVLLLSMRDMNIAKLTSADVPLFSAIMQDLFPSVELPVIDYGKLRETIEQETQDLGLQASPFTVTKVLQLYETKSSRHATMIVGCTGSDPNFNLVKEFPLNPKALSLGELYGEYDLNTNEWTDGVLSSVMRAACVPESPRGREKWILFDGPVDTLWIESMNSVMDDNKVLTLINGERIAMPEQVSLLFEVENLAVASPATVSRCGMVYTDYADLGWKPYVQSWLEKRPKVAPVLSKCFDLSASTTLWFSKQNQEGRETPSLCDAPCLTDSGYVPFSSSVQMNPADGENFASMVELMFVFSMIWSVCAAVDEEGRKRIDSCLREMEGSFPNKDTVYEYFVDPKMRSWASFEDKLPKSWRYPPNCPFYKIMVPTVDTVRYNYLVSALVASQKPVLLVGPVGTGKTSIAQSVLQSLPSSQWSVLTVNMSAQTTSNNVQSIIESRVEKRTKGVYVPFGGKSMITFMDDLNMPAKDMFGSQPPLELIRLWIDYGFWYDRTKQTIKYIRDMFLMAAMGPPGGGRTVISSRLQSRFNIINMAFPTEPQIIRIFGTMINQKLQDFEEEVKPIGNVVTEATLDLYNTVVQRFLPTPAKIHYLFNLRDISKVFQGMLRASKDFHDTKASITRLWIHECFRVFSDRLVDVADTEAFVGIISDKLGSFFDLTFHNLCPNKRSPIFGDFLREPKVYEDLTDLSALKTAMETALHEYNLSPAVVPMKLVLFREAVEHITRIVRVIGQPRGNMLLVGIGGSGRQSLARLASSICDYITFQIEVTKHYRKQEFREDIKRLYRQAGVELKATSFLFVDTQIADPVFLEDINNILSSGEVPNLYKTDEFEEIQAHIIEQARAEQVPESSDSLFAYLIERVRNNLHIILCLSPVGDPFRNWIRQYPALVNCTTINWFSEWPREALLEVAEKYLLGADLGTQENIHRKVAQIFVTMHWSVAQYSQKMLLELRRHNYVTPTNYLELVSGYKKLLAEKRQELLDQANKLRTGLFKIDETREKVEVMSLELEDAKKKVAEFQKQCEEYLVIIVQQKREADEQQKAVTANSEKIAIEEVKCQALADNAQKDLEEALPALEEAMRALESLNKKDIGEIKSYGRPPAQVEMVLQAVMILRGNEPTWAEAKRQLGEQNFIKSLINFDKDNISDKVLKKIGAYCAQPDFQPDIIGRVSLAAKSLCMWVRAMELYGRLYRVVEPKRVRLNAALAQLQEKQAALAEAQEKLREVAEKLEMLKKQYDEKLAQKEELRKKSEEMETKLARAGMLVSGLAGEKARWEETVKGLEEDLGYLVGDCLLAAAFLSYMGPFLTNYRDEIVNQIWIRKIRELQVPCSPRFTFDNFLSNPTKVRDWNIQGLPSDAFSTENGIIVTRGNRWALMIDPQAQALKWIKNMEGSQGLQIIDLQMSDYLRILEDAIQFGHPVLLQNVQEYLDPTLNPVLNKSVARIGGRLLMRIGDKEVEYNTSFRFYITTKLSNPHYSPETSAKTTIVNFAVKEQGLEAQLLGIVVRKERPELEEQKDSLVINIAAGKRKLKELEDEILRLLNEATGSLLDDVQLVNALRTSKITATEVTEQLETSETTEINIDLAREAYRPCAQRASVLFFVLNDMGRIDPMYQFSLDAYISLFILSIDKSHRSNKLEDRIDYLNEYHTYAVYRYTCRTLFERHKLLFSFQMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNPCTSWLADAYWDNITELDKLTNFHGLMNSFEQYPRDWHLWYTNATPEKAMLPGEWENACNEMQRMLIVRSLRQDRVAFCVTSFIISNLGSRFVEPPVLNMKSVMEDSAPRTPLVFILSPGVDPTSGLLQLAEHTGMAQRFHALSLGQGQAPIAARLLREGVIQGHWVFLANCHLSLSWMPNLDKLVEQLQVEDPHPSFRLWLSSSPHPDFPISILQASIKMTTEPPKGLKANMTRLYQLMTEPQFSRCSKPAKYKKLLFALCFFHSVLLERKKFLQLGWNIIYGFNDSDFEVSENLLSLYLDEYEETPWDALKYLIAGVNYGGHVTDDWDRRLLTTYINDYFCDPSLSTPSYRLSVLENYFIPKDGSLASYKEYISMLPSMDPPEAFGQHPNADVASQITEARTLFETLLSLQPQITPTRAGGQSREEKVLELAADVKQKIPEMIDYEGTRKLLALDPSPLNVVLLQEIQRYNKLMETILFSLTDLEKGIQGLIVMSTSLEEIFNCIFDAHVPPLWGKAYPSQKPLASWTRDLALRVEQFELWASRARPPVIFWLSGFTFPTGFLTAVLQSSARQNNISVDSLSWEFVVSTVDDSNLVYPPKDGVWVRGLYLEGAGWDRKNSCLVEAEPMQLVCLMPTIHFRPTESRKKSAKGMYSCPCYYYPNRAGSSDRASFVIGIDLRSGTMPSDHWIKRGTALLMSLDS", "length": 4469, "header": "tr|F1ST22-1|F1ST22_PIG Isoform 1 of Dynein axonemal heavy chain 2 OS=Sus scrofa OX=9823 GN=DNAH2 PE=3 SV=5 CANONICAL=F1ST22-1" }, "locus": { "chromosome": "12", "start_pos": 53086531, "end_pos": 52992843, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019547.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019547.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019029.5", "url": "https://www.ensembl.org/id/ENSSSCP00000019029.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2648, "start_aa": "Thr", "end_pos": 2648, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2648", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3020, "start_aa": "Thr", "end_pos": 3020, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3020", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 3890, "start_aa": "Thr", "end_pos": 3890, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr3890", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 4115, "start_aa": "Thr", "end_pos": 4115, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr4115", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FM79", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FM79" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" }, { "name": "minus-end-directed microtubule motor activity", "id": "GO:0008569", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008569", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" }, { "name": "dynein light intermediate chain binding", "id": "GO:0051959", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051959", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" }, { "name": "dynein intermediate chain binding", "id": "GO:0045505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045505", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" }, { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" }, { "name": "axonemal dynein complex", "id": "GO:0005858", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005858", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" }, { "name": "sperm end piece", "id": "GO:0097229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097229", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" }, { "name": "inner dynein arm", "id": "GO:0036156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036156", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "microtubule-based movement", "id": "GO:0007018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007018", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" }, { "name": "inner dynein arm assembly", "id": "GO:0036159", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036159", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" }, { "name": "cilium-dependent cell motility", "id": "GO:0060285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060285", "evidence": [ { "database": "UniProtKB", "id": "F1ST22", "url": "https://www.uniprot.org/uniprotkb/F1ST22" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1530, "end_pos": 1532, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1762, "end_pos": 1764, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1890, "end_pos": 1892, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2486, "end_pos": 2488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 253, "end_pos": 255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2766, "end_pos": 2768, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2953, "end_pos": 2955, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3205, "end_pos": 3207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3498, "end_pos": 3500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3520, "end_pos": 3522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3779, "end_pos": 3781, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3809, "end_pos": 3811, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3998, "end_pos": 4000, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4052, "end_pos": 4054, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4343, "end_pos": 4345, "annotation": "n_glycosylation_sequon" }, { "start_pos": 517, "end_pos": 519, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1ST22-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 4469, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1ST22-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1ST22" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST22" }, { "id": "SM00382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAA+ ATPase", "eco_id": "ECO_0000259", "start_pos": 1859, "end_pos": 1995, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 2648, 3020, 3890, 4115 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 1530, "end_pos": 1532 }, { "start_pos": 1762, "end_pos": 1764 }, { "start_pos": 1890, "end_pos": 1892 }, { "start_pos": 2486, "end_pos": 2488 }, { "start_pos": 253, "end_pos": 255 }, { "start_pos": 2766, "end_pos": 2768 }, { "start_pos": 2953, "end_pos": 2955 }, { "start_pos": 3205, "end_pos": 3207 }, { "start_pos": 3498, "end_pos": 3500 }, { "start_pos": 3520, "end_pos": 3522 }, { "start_pos": 3779, "end_pos": 3781 }, { "start_pos": 3809, "end_pos": 3811 }, { "start_pos": 3998, "end_pos": 4000 }, { "start_pos": 402, "end_pos": 404 }, { "start_pos": 4052, "end_pos": 4054 }, { "start_pos": 4343, "end_pos": 4345 }, { "start_pos": 517, "end_pos": 519 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STS1-1", "uniprot_ac": "F1STS1", "uniprot_id": "F1STS1_PIG", "mass": { "chemical_mass": 55386.0, "monoisotopic_mass": 55386.0 }, "refseq": { "ac": "XP_003356269", "name": "phosphatidylinositol glycan anchor biosynthesis class V", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356269" }, "gene_names": [ { "name": "PIGV", "type": "recommended", "evidence": [ { "id": "F1STS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS1" } ] }, { "name": "PIGV", "type": "synonym", "evidence": [ { "id": "XP_003356269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356269" } ] } ], "protein_names": [ { "name": "GPI mannosyltransferase 2", "type": "recommended", "evidence": [ { "id": "F1STS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS1/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.-", "type": "synonym", "evidence": [ { "id": "F1STS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS1/entry#names_and_taxonomy" } ] }, { "name": "GPI mannosyltransferase 2", "type": "synonym", "evidence": [ { "id": "XP_003356269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356269" } ] }, { "name": "phosphatidylinositol glycan anchor biosynthesis class V", "type": "synonym", "evidence": [ { "id": "XP_003356269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356269" } ] } ], "function": [ { "annotation": "Mannosyltransferase involved in glycosylphosphatidylinositol-anchor biosynthesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPI6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPI6#function" }, { "database": "UniProtKB", "id": "RU363112", "url": "https://www.uniprot.org/uniprotkb/RU363112#function" }, { "database": "UniProtKB", "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PIGV", "url": "https://www.uniprot.org/uniprotkb/F1STS1", "locus": { "chromosome": "6", "start_pos": 84139249, "end_pos": 84129586, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000040007", "url": "https://www.ensembl.org/id/ENSSSCG00000040007" } ] } } ], "crossref": [ { "id": "ENSSSCG00000040007", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000040007", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525584", "url": "https://www.ncbi.nlm.nih.gov/gene/100525584", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525584", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525584", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GALFIWC", "url": "https://omabrowser.org/oma/group/GALFIWC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STS1", "url": "https://www.orthodb.org/?gene=F1STS1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12468", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12468", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12468:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12468:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-162710", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-162710", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003356269", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356269", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FPI6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STS1-1", "url": "https://www.uniprot.org/uniprotkb/F1STS1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELLRPLWGLLSLRSCLLISVALLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSAMAQLERGRSWTSGLLFALATGVRANGLVNVGFLVHSQCQGFFSSLTMRNPLRQLLKLMGSVFLSVLSLGLPFGLFQYYAYTQFCVQGSAHPIPKPLLQLALDKGYRVAEGNEPPWCSWKLPLVYSYVQDIYWNVGFLRYYELKQVPNFLLAAPMAVLVAWATWTYVTTHPWLCLTLGMQRNKNNKSLEKPDPGFLSPRVFVYLVHAAVLLLFGSLCMHVQVLTRFLCSSTPIVYWFSAHLLHDREPPLRSLKTVPWKPLAEDFPPGQKVPRNSIMGLLYNWKACSLVTRCILGYFLTYWLLGLLLHCNFLPWT", "length": 493, "header": "tr|F1STS1-1|F1STS1_PIG Isoform 1 of GPI mannosyltransferase 2 OS=Sus scrofa OX=9823 GN=PIGV PE=3 SV=1 CANONICAL=F1STS1-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FPI6-1", "url": "https://www.uniprot.org/uniprotkb/F1STS1/entry#A0A8W4FPI6-1", "sequence": { "sequence": "MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELLRPLWGLLSLRSCLLISVALLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSAMAQLERGRSWTSGLLFALATGVRANGLVNVGFLVHSQCQGFFSSLTMRNPLRQLLKLMGSVFLSVLSLGLPFGLFQYYAYTQFCVQGSAHPIPKPLLQLALDKGYRVAEGNEPPWCSWKLPLVYSYVQDIYWNVGFLRYYELKQVPNFLLAAPMAVLVAWATWTYVTTHPWLCLTLGMQRNKNNKSLEKPDPGFLSPRVFVYLVHAAVLLLFGSSHQVFVLLHSHCILVFSSLASRSRTTAEIPKDCALEASCRRLSTRTKGPQKLYHGTLVQLESLFSGHTMHSRLLPDLLAPGTTPTLQLPALDMTWRLRGQASRLNRI", "length": 501, "header": "tr|A0A8W4FPI6-1|F1STS1_PIG Computationally mapped isoform of GPI mannosyltransferase 2 OS=Sus scrofa OX=9823 GN=PIGV PE=3 SV=1 CANONICAL=F1STS1-1" }, "locus": { "chromosome": "6", "start_pos": 84138563, "end_pos": 84133262, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098906.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098906.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081286.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081286.1" } ] } }, { "isoform_ac": "F1STS1-1", "url": "https://www.uniprot.org/uniprotkb/F1STS1/entry#F1STS1-1", "sequence": { "sequence": "MWPLDPSLKEVLGFAVGCRVLTLVLQAFFNAIIPDHRAEAFSPPRFGPSSSVDQLVEGLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLVGTELLRPLWGLLSLRSCLLISVALLNSLFSVLAALALHDLGCLVLHCPRQAFYGALLFCLSPANVFLTAGYSEALFALLTFSAMAQLERGRSWTSGLLFALATGVRANGLVNVGFLVHSQCQGFFSSLTMRNPLRQLLKLMGSVFLSVLSLGLPFGLFQYYAYTQFCVQGSAHPIPKPLLQLALDKGYRVAEGNEPPWCSWKLPLVYSYVQDIYWNVGFLRYYELKQVPNFLLAAPMAVLVAWATWTYVTTHPWLCLTLGMQRNKNNKSLEKPDPGFLSPRVFVYLVHAAVLLLFGSLCMHVQVLTRFLCSSTPIVYWFSAHLLHDREPPLRSLKTVPWKPLAEDFPPGQKVPRNSIMGLLYNWKACSLVTRCILGYFLTYWLLGLLLHCNFLPWT", "length": 493, "header": "tr|F1STS1-1|F1STS1_PIG Isoform 1 of GPI mannosyltransferase 2 OS=Sus scrofa OX=9823 GN=PIGV PE=3 SV=1 CANONICAL=F1STS1-1" }, "locus": { "chromosome": "6", "start_pos": 84138515, "end_pos": 84133262, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003954.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003954.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003863.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003863.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FPI6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPI6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100525584", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525584", "resource": "KEGG Pathway" }, { "id": "R-SSC-162710", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-162710", "resource": "Reactome", "description": "Synthesis of glycosylphosphatidylinositol (GPI)" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0R4ITR4-1", "protein_name": "GPI mannosyltransferase 2", "gene_name": "pigv", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSCCHCPQLKLSSMTLFNKNEDIQTVLRCATFTRLISLFLQAVLNVVIPDHVADAFSPPRSEAPLLLDPLIEALFGGLSHWDAEHFLFIAERGYIYEHNFAFFPLFPFILRLLASTLLWPLCGFLTMRGRLIITVVIGNSFLFVLSAVALYSLSRIVLQERKLAFVAVMMYCLTPANVFMLAGYSETLFATLTFAGLWMLERRYTVGACLLFGFATGARANGLVNVGFLLYLTLQRCLARARAFNKVAEGVQYHNYIWELVRFAFTGAVYAALVALPFGLFQFYGFQTFCHPTSNQIPPALVNLAQHKGYRVADAASPKPKWCHWQIPLLYSYIQDVYWDVGFLRYFQWKQIPNFILALPVATLGFKALFIYITDNPVFCMYLGLGEKGNSKKIYGFCNPRVFVYIVHNTVLLLFGIFCMHVQVLTRFLASSSPVLYWVSGHLLFKYEPLLKEEKLFRSDQTQQKKNHKPGLRCFAGMWRNNPVFYLLMHWKTCSIYTQCILGYFISYWFLGLALHCNFLPWT", "length": 523 }, "evidence": [ { "id": "F1STS1", "url": "https://omabrowser.org/oma/group/F1STS1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8C2M425-1", "protein_name": "GPI alpha-1,6-mannosyltransferase 2", "gene_name": "PIGV", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWSLDPSQKEVLRFAVSCRILTLMLQALFNIIIPDHHADAFSPPRLASSCSVDQLVEGLLGGLSRWDAEHFLFIAEHGYLYEHNFAFFPGFPLALLMGTELLRPLQGLLSQRSCLLVSVALLNFLFSVLAAVTLHDLGCLVLGCPRQAFYAAMLFCLSPANVFLAAGYSEALFAFLTFSAMGQLERGRSWASGLLFALATGVRSNGLVSVGFLLHAQCRGFFSSLVVLNPLKPLFKLMASLCLSVLTVSLPFALFQYYAYTQFCLPGSAHSVPEPLVQLAVDKGYRITGGNEPPWCSWGLPLVYSYIQDVYWNVGFLRYYELRQVPNFLLATPVAVLVVWAAWTYVTTHPWLCLTLGLRRSKDSKKTLEKPHPGFLSPKVFVYLVHAAGLLLFGSLCMHVQVLTRLLCSSTPVVYWFPAHLLQNQEPLLRSVDTVPEKLLEKNSPPGQKAPRNCIMKLLYNWRACSPVTRCILGYFLTYWLLGLLLHCNFLPWT", "length": 494 }, "evidence": [ { "id": "F1STS1", "url": "https://omabrowser.org/oma/group/F1STS1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AAA9T200-1", "protein_name": "GPI mannosyltransferase 2", "gene_name": "PIGV", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWPLDPSRKEVLGFAVSCRVLTLVLQAVFNAIIPDHRAEAFSPPRLAPSGSADQLVEGLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLVLLLGAELLRPLWGLLNLRSCLLISVALLNSLFSALAALALHDLGCLVLRCPRQASYGALLFCLSPANVFLTAGYSEALFALLTFSAMGQLERGHSWTSGLLFAMATGVRSNGLVNIGFLIHSQCQGFFSSLMVHNALRQLLKLMGSVFLSVFTLGLPFALFQYYAYTQFCLPGSAHPIPQPLLQLAVDQGYRTAEGNKPPWCSWGLPLIYSYIQDVYWNVGFLRYFELKQVPNFLLAAPMAILVAWATWTYVTTHPWLFLTLGMQRSKNKKTLEKPEPGFLSPRVFVYLVHAAALLLFGSLCMHVQVLTRFLCSSTPIVYWFSAHLLLDQEPLLKSLEAVPGKPPAGDPPPGQKGPRNSIMGLLYNWKTCSLVTRCVLGYFVTYWLLGLLLHCNWLPWT", "length": 493 }, "evidence": [ { "id": "F1STS1", "url": "https://omabrowser.org/oma/group/F1STS1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5KR61-1", "protein_name": "GPI alpha-1,6-mannosyltransferase 2", "gene_name": "Pigv", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLLDPSQKEVLKFAVSCRILTLVLQALFNIIIPDHHADAFSPPRLAPSGSVDQLVEALLGGLSRWDAEHFLFIAEHGYLYEHNFAFFPGFPLALLMGTELLRPLQGLLSERSCLLVSVALLNSLFSVLAAVALHDLGCLVLHCPRQAFCAALLFCLSPANVFLAAGYSEALFAFLTFSAMGQLERGRGWASGLLFALAAGVRSNGLVSVGFLLHSQCRGFCSSLVVLDPLKGLVKLMASLCLSVLTVSLPFALFQYYAYTQFCFPGSAHAIPEPLLRLASDRGYRLAGDYEPPWCSRAPPLIYSYIQDVYWNVGLLRYYELRQVPNFLLATPVTVLVVWATWTYVTAHPWLCLTLGLQRTKDRESLEKPHPGFLSAKVFVYLVHAAALLAFGGLCMHVQVLTRLLGSSTPITYWFPAYLLQDREPLLRCVDTAPQKLLENSPPGQKAPRNCVMKLLYNWKTCSPVTKCILVYFLTYWLLGLIMHCNFLPWT", "length": 492 }, "evidence": [ { "id": "F1STS1", "url": "https://omabrowser.org/oma/group/F1STS1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPN3-1", "protein_name": "GPI alpha-1,6-mannosyltransferase 2", "gene_name": "Pigv", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLDPSQKEVLRFAVNCRILTLVLQALFNLIIPDHHADAFCPPRLAPSGSADQLVEGLLGGLSRWDAEHFLFIAEHGYLYEHNFAFFPGFPLALLMGTELLRPLQGLLSQRSCLLVSVALLNLLFSVLAAVALHDLGCLVLHCPRQALCAALLFCISPANVFLAAGYSEALFAFLTFSAMGQLERGRGWASGLLFALAAGVRSNGLVSLGFLLHSQCRGFCSSLAVLSPWKPLVKLMASVCLSVLIVSLPFALFQYRAYIQFCSPGSAPSIPEPLLQLAADKGYRLAGENAPPWCSWDLPLIYNYIQDVYWNVGLLRYYELKQVPNFLLATPVTVLVVWATWTYVTTHPWLCLTLGLQRTKDRENPEKPHRGFLSPKVFVYLVHAAALLVFGGLCMHVQVLTRFLASSTPIMYWFPAHLLQDQEPLLRCVDTEPGKLPQEKSPPGQKAPRNCLMKLFYDWKRCSPVTRCVLVYFLTYWLLGLILHCNFLPWT", "length": 493 }, "evidence": [ { "id": "F1STS1", "url": "https://omabrowser.org/oma/group/F1STS1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NUD9-1", "protein_name": "GPI alpha-1,6-mannosyltransferase 2", "gene_name": "PIGV", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWPQDPSRKEVLRFAVSCRILTLMLQALFNAIIPDHHAEAFSPPRLAPSGFVDQLVEGLLGGLSHWDAEHFLFIAEHGYLYEHNFAFFPGFPLALLVGTELLRPLRGLLSLRSCLLISVASLNFLFFMLAAVALHDLGCLVLHCPHQSFYAALLFCLSPANVFLAAGYSEALFALLTFSAMGQLERGRVWTSVLLFAFATGVRSNGLVSVGFLMHSQCQGFFSSLTMLNPLRQLFKLMASLFLSVFTLGLPFALFQYYAYTQFCLPGSARPIPEPLVQLAVDKGYRIAEGNEPPWCFWDVPLIYSYIQDVYWNVGFLKYYELKQVPNFLLAAPVAILVAWATWTYVTTHPWLCLTLGLQRSKNNKTLEKPDLGFLSPQVFVYVVHAAVLLLFGGLCMHVQVLTRFLGSSTPIMYWFPAHLLQDQEPLLRSLKTVPWKPLAEDSPPGQKVPRNPIMGLLYHWKTCSPVTRYILGYFLTYWLLGLLLHCNFLPWT", "length": 493 }, "evidence": [ { "id": "F1STS1", "url": "https://omabrowser.org/oma/group/F1STS1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9V7W1-1", "protein_name": "GPI mannosyltransferase 2", "gene_name": "PIG-V", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTEKVTKLALASRLIVLLVQLVANGALPEHKPDVFRMPVSSDQNASWIDKVIKRCLGGLRHWDGEYFLHIAENLYSYENTLAFYPLYPVVVRHVGQAVEAIGISLSQESILLVVAVALNFWLFCESANLLFQLTQVLFNDLNKSWNAALIYCFNPATIFFTAAYSETFFAYSSLHLMLECSKPTGSFRYLRLGTALAACLLCRSNGLITLGYPLYFFGRQLLLKNKEPNTCMQLTQMTLTILGAIGILHTYYFYIYRLYCLPNTRPNHPQHIVDYAVERKYLLSGQGSEGSPWCQYTLPFPYTYVQSHYWDVGFLRYYKWKQLPNFLLALPMLSFMHWHCYDYMQHLAKAVWAKLTPSGFKELIRDHTTFPFVLHAAILTLVCTVYVHIQVSTRLLASATPVFYWFAADHMPKTLAQLKLRSKAGALFVWCTTYSLVGTVLFSNNYPWT", "length": 449 }, "evidence": [ { "id": "F1STS1", "url": "https://omabrowser.org/oma/group/F1STS1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1" } ], "pmid": "" }, { "name": "mannosyltransferase complex", "id": "GO:0031501", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031501", "evidence": [ { "database": "UniProtKB", "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "GPI anchor biosynthetic process", "id": "GO:0006506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006506", "evidence": [ { "database": "UniProtKB", "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "dol-P-Man:Man(1)GlcN-acyl-PI alpha-1,6-mannosyltransferase activity", "id": "GO:0120563", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120563", "evidence": [ { "database": "UniProtKB", "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1" } ], "pmid": "" }, { "name": "mannosyltransferase activity", "id": "GO:0000030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000030", "evidence": [ { "database": "UniProtKB", "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1" } ], "pmid": "" }, { "name": "alpha-1,6-mannosyltransferase activity", "id": "GO:0000009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000009", "evidence": [ { "database": "UniProtKB", "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1" } ], "pmid": "" }, { "name": "GPI mannosyltransferase activity", "id": "GO:0004376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004376", "evidence": [ { "database": "UniProtKB", "id": "F1STS1", "url": "https://www.uniprot.org/uniprotkb/F1STS1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-162873", "name": "(ethanolamineP) mannose (a1-4) glucosaminyl-acyl-PI + dolichol phosphate D-mannose -> mannose (a1-6) (ethanolamineP) mannose (a1-4) glucosaminyl-acyl-PI + dolichol phosphate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-8855663" ], "output_participant_list": [ "R-ALL-162872" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-162873", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-162873" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-162872", "participant_name": "dolichyl phosphate [endoplasmic reticulum membrane]", "crossref": [ { "id": "ZINC000030320680", "database": "ZINC", "url": "" }, { "id": "57683", "database": "ChEBI", "url": "" }, { "id": "ZINC000030320683", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-8855663", "participant_name": "(ethanolamineP) mannose (a1-4) glucosaminyl-acyl-PI [lumenal side of endoplasmic reticulum membrane]", "crossref": [ { "id": "63563", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 364, "end_pos": 366 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5P3-1", "uniprot_ac": "F2Z5P3", "uniprot_id": "F2Z5P3_PIG", "mass": { "chemical_mass": 18594.0, "monoisotopic_mass": 18594.0 }, "refseq": {}, "gene_names": [ { "name": "UBE2D4", "type": "recommended", "evidence": [ { "id": "F2Z5P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ] } ], "protein_names": [ { "name": "Ubiquitin conjugating enzyme E2 D4", "type": "synonym", "evidence": [ { "id": "F2Z5P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBE2D4", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3", "locus": { "chromosome": "18", "start_pos": 48733395, "end_pos": 48756291, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016722", "url": "https://www.ensembl.org/id/ENSSSCG00000016722" } ] } } ], "crossref": [ { "id": "F2Z5P3", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5P3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016722", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016722", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23792", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23792", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524597", "url": "https://www.ncbi.nlm.nih.gov/gene/100524597", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524597", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524597", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2RMT5", "url": "https://www.orthodb.org/?gene=A0A5G2RMT5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2RMT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RMT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5P3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "LHIKRKWNYSLPTDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYASDWTPSLGTSICHGSGPRNGKKTKKKKRKFRIK", "length": 166, "header": "tr|F2Z5P3-1|F2Z5P3_PIG Isoform 1 of Ubiquitin conjugating enzyme E2 D4 OS=Sus scrofa OX=9823 GN=UBE2D4 PE=3 SV=3 CANONICAL=F2Z5P3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RMT5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3/entry#A0A5G2RMT5-1", "sequence": { "sequence": "MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM", "length": 147, "header": "tr|A0A5G2RMT5-1|F2Z5P3_PIG Computationally mapped isoform of Ubiquitin conjugating enzyme E2 D4 OS=Sus scrofa OX=9823 GN=UBE2D4 PE=3 SV=1 CANONICAL=F2Z5P3-1" }, "locus": { "chromosome": "18", "start_pos": 48756205, "end_pos": 48736165, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075140.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075140.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073975.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073975.1" } ] } }, { "isoform_ac": "F2Z5P3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3/entry#F2Z5P3-1", "sequence": { "sequence": "LHIKRKWNYSLPTDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYASDWTPSLGTSICHGSGPRNGKKTKKKKRKFRIK", "length": 166, "header": "tr|F2Z5P3-1|F2Z5P3_PIG Isoform 1 of Ubiquitin conjugating enzyme E2 D4 OS=Sus scrofa OX=9823 GN=UBE2D4 PE=3 SV=3 CANONICAL=F2Z5P3-1" }, "locus": { "chromosome": "18", "start_pos": 48748937, "end_pos": 48737897, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018203.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018203.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017712.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017712.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RMT5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524597", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524597", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ], "pmid": "" }, { "name": "ubiquitin conjugating enzyme activity", "id": "GO:0061631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061631", "evidence": [ { "database": "UniProtKB", "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "protein K11-linked ubiquitination", "id": "GO:0070979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070979", "evidence": [ { "database": "UniProtKB", "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ], "pmid": "" }, { "name": "protein K48-linked ubiquitination", "id": "GO:0070936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070936", "evidence": [ { "database": "UniProtKB", "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ], "pmid": "" }, { "name": "protein K63-linked ubiquitination", "id": "GO:0070534", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070534", "evidence": [ { "database": "UniProtKB", "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ], "pmid": "" }, { "name": "protein K27-linked ubiquitination", "id": "GO:0044314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044314", "evidence": [ { "database": "UniProtKB", "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ], "pmid": "" }, { "name": "protein K6-linked ubiquitination", "id": "GO:0085020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0085020", "evidence": [ { "database": "UniProtKB", "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ], "pmid": "" }, { "name": "protein K29-linked ubiquitination", "id": "GO:0035519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035519", "evidence": [ { "database": "UniProtKB", "id": "F2Z5P3", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 79, "end_pos": 81, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5P3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 166, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5P3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5P3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5P3" }, { "id": "PS50127", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50127" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBC core", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 145, "start_aa": "Leu", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 39, "end_pos": 41 }, { "start_pos": 79, "end_pos": 81 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5H1-1", "uniprot_ac": "I3L5H1", "uniprot_id": "I3L5H1_PIG", "mass": { "chemical_mass": 103072.0, "monoisotopic_mass": 103072.0 }, "refseq": { "ac": "XP_020956394", "name": "netrin receptor UNC5C isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956394" }, "gene_names": [ { "name": "UNC5C", "type": "recommended", "evidence": [ { "id": "I3L5H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ] }, { "name": "UNC5C", "type": "synonym", "evidence": [ { "id": "XP_020956394", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956394" } ] } ], "protein_names": [ { "name": "Netrin receptor UNC5", "type": "recommended", "evidence": [ { "id": "I3L5H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5H1/entry#names_and_taxonomy" } ] }, { "name": "netrin receptor UNC5C isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020956394", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956394" } ] } ], "function": [ { "annotation": "Receptor for netrin required for axon guidance. Mediates axon repulsion of neuronal growth cones in the developing nervous system upon ligand binding.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZNC3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNC3#function" }, { "database": "UniProtKB", "id": "RU367033", "url": "https://www.uniprot.org/uniprotkb/RU367033#function" }, { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UNC5C", "url": "https://www.uniprot.org/uniprotkb/I3L5H1", "locus": { "chromosome": "8", "start_pos": 124530603, "end_pos": 124142030, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021874", "url": "https://www.ensembl.org/id/ENSSSCG00000021874" } ] } } ], "crossref": [ { "id": "I3L5H1", "url": "https://alphafold.ebi.ac.uk/entry/I3L5H1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021874", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021874", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100621284", "url": "https://www.ncbi.nlm.nih.gov/gene/100621284", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000488", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000488", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621284", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621284", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZNC3", "url": "https://www.orthodb.org/?gene=A0A286ZNC3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12582", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12582", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12582:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12582:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00531", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00531", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17217", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17217", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25609", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25609", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020956394", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956394", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZNC3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZNC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5H1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRKGLRATAARCGLGLGYVLQMLVLPALALLSASGTGSAAQDDDFFHELPETFPSDPPEPLPHFLIEPEEAYIVKNKPVNLYCKASPATQIYFKCNSEWVHQKDHIVDERVDETSGLIVREVSIEISRQQVEELFGPEDYWCQCVAWSSAGTTKSRKAYVRIAYLRKTFEQEPLGKEVSLEQEVLLQCRPPEGIPVAEVEWLKNEDIIDPVEDRNFYITIDHNLIIKQARLSDTANYTCVAKNIVAKRKSTTATVIVYVNGGWSTWTEWSVCNSRCGRGYQKRTRTCTNPAPLNGGAFCEGQSVQKIACTTLCPVDGRWTSWSKWSTCGTECTHWRRRECTAPAPKNGGKDCDGLVLQSKNCTDGLCMQTAPDSDDVALYVGVVIAVIVCLAISVVVALFVYRKNHRNFESDIIDSSALNGGFQPVNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPILDPLPNLKIKVYNTSGAVTPQDDLSEFASKLSPQMTQSLLENEALNLKNQSLARQTDPSCTAFGTFNSLGGHLIVPNSGVSLLIPAGAIPQGRVYEMYVTVHRKENMRPPMEDSQTLLTPVVSCGPPGALLTRPVILTMHHCADPNTEDWKIQLKSQAAQGQWEDVVVVGEENFTTPCYIQLDAEACHLLSENLGTYALVGQSTTKAAAKRLKLAIFGPLCCSSLEYSLRVYCLDDTQDALKEVLQLERQMGGQLLEEPKALHFKGSTHNLRLSIHDIAHSLWKSKLLAKYQEIPFYHIWSGSQRNLHCTFTLERFSLNTVELVCKLCVRQVEGEGQIFQLNCTVSEEPTGIDLPLLDPASTITTMTGPSAFSIPPPIRQKLCSSLDAPQTRGHDWRMLAHKLNLDRYLNYFATKSSPTGVILDLWEAQNFPDGNLSVLAAVLEEMGRHETVVSLATEGQY", "length": 931, "header": "tr|I3L5H1-1|I3L5H1_PIG Isoform 1 of Netrin receptor UNC5 OS=Sus scrofa OX=9823 GN=UNC5C PE=3 SV=3 CANONICAL=I3L5H1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNC3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1/entry#A0A286ZNC3-1", "sequence": { "sequence": "MRKGLRATAARCGLGLGYVLQMLVLPALALLSASGTGSAAQDDDFFHELPETFPSDPPEPLPHFLIEPEEAYIVKNKPVNLYCKASPATQIYFKCNSEWVHQKDHIVDERVDETSGLIVREVSIEISRQQVEELFGPEDYWCQCVAWSSAGTTKSRKAYVRIAYLRKTFEQEPLGKEVSLEQEVLLQCRPPEGIPVAEVEWLKNEDIIDPVEDRNFYITIDHNLIIKQARLSDTANYTCVAKNIVAKRKSTTATVIVYVNGGWSTWTEWSVCNSRCGRGYQKRTRTCTNPAPLNGGAFCEGQSVQKIACTTLCPVDGRWTSWSKWSTCGTECTHWRRRECTAPAPKNGGKDCDGLVLQSKNCTDGLCMQSFIYPISTEQRTQNEYGFSSAPDSDDVALYVGVVIAVIVCLAISVVVALFVYRKNHRNFESDIIDSSALNGGFQPVNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPILDPLPNLKIKVYNTSGAVTPQDDLSEFASKLSPQMTQSLLENEALNLKNQSLARQTDPSCTAFGTFNSLGGHLIVPNSGVSLLIPAGAIPQGRVYEMYVTVHRKENMRPPMEDSQTLLTPVVSCGPPGALLTRPVILTMHHCADPNTEDWKIQLKSQAAQGQWEDVVVVGEENFTTPCYIQLDAEACHLLSENLGTYALVGQSTTKAAAKRLKLAIFGPLCCSSLEYSLRVYCLDDTQDALKEVLQLERQMGGQLLEEPKALHFKGSTHNLRLSIHDIAHSLWKSKLLAKYQEIPFYHIWSGSQRNLHCTFTLERFSLNTVELVCKLCVRQVEGEGQIFQLNCTVSEEPTGIDLPLLDPASTITTMTGPSAFSIPPPIRQKLCSSLDAPQTRGHDWRMLAHKLNLDRYLNYFATKSSPTGVILDLWEAQNFPDGNLSVLAAVLEEMGRHETVVSLATEGQY", "length": 950, "header": "tr|A0A286ZNC3-1|I3L5H1_PIG Computationally mapped isoform of Netrin receptor UNC5 OS=Sus scrofa OX=9823 GN=UNC5C PE=3 SV=2 CANONICAL=I3L5H1-1" }, "locus": { "chromosome": "8", "start_pos": 124527486, "end_pos": 124149968, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060159.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060159.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032968.2", "url": "https://www.ensembl.org/id/ENSSSCP00000032968.2" } ] } }, { "isoform_ac": "I3L5H1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1/entry#I3L5H1-1", "sequence": { "sequence": "MRKGLRATAARCGLGLGYVLQMLVLPALALLSASGTGSAAQDDDFFHELPETFPSDPPEPLPHFLIEPEEAYIVKNKPVNLYCKASPATQIYFKCNSEWVHQKDHIVDERVDETSGLIVREVSIEISRQQVEELFGPEDYWCQCVAWSSAGTTKSRKAYVRIAYLRKTFEQEPLGKEVSLEQEVLLQCRPPEGIPVAEVEWLKNEDIIDPVEDRNFYITIDHNLIIKQARLSDTANYTCVAKNIVAKRKSTTATVIVYVNGGWSTWTEWSVCNSRCGRGYQKRTRTCTNPAPLNGGAFCEGQSVQKIACTTLCPVDGRWTSWSKWSTCGTECTHWRRRECTAPAPKNGGKDCDGLVLQSKNCTDGLCMQTAPDSDDVALYVGVVIAVIVCLAISVVVALFVYRKNHRNFESDIIDSSALNGGFQPVNIKAARQDLLAVPPDLTSAAAMYRGPVYALHDVSDKIPMTNSPILDPLPNLKIKVYNTSGAVTPQDDLSEFASKLSPQMTQSLLENEALNLKNQSLARQTDPSCTAFGTFNSLGGHLIVPNSGVSLLIPAGAIPQGRVYEMYVTVHRKENMRPPMEDSQTLLTPVVSCGPPGALLTRPVILTMHHCADPNTEDWKIQLKSQAAQGQWEDVVVVGEENFTTPCYIQLDAEACHLLSENLGTYALVGQSTTKAAAKRLKLAIFGPLCCSSLEYSLRVYCLDDTQDALKEVLQLERQMGGQLLEEPKALHFKGSTHNLRLSIHDIAHSLWKSKLLAKYQEIPFYHIWSGSQRNLHCTFTLERFSLNTVELVCKLCVRQVEGEGQIFQLNCTVSEEPTGIDLPLLDPASTITTMTGPSAFSIPPPIRQKLCSSLDAPQTRGHDWRMLAHKLNLDRYLNYFATKSSPTGVILDLWEAQNFPDGNLSVLAAVLEEMGRHETVVSLATEGQY", "length": 931, "header": "tr|I3L5H1-1|I3L5H1_PIG Isoform 1 of Netrin receptor UNC5 OS=Sus scrofa OX=9823 GN=UNC5C PE=3 SV=3 CANONICAL=I3L5H1-1" }, "locus": { "chromosome": "8", "start_pos": 124527486, "end_pos": 124149968, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030024.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030024.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019270.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019270.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZNC3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNC3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621284", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621284", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "lamellipodium", "id": "GO:0030027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030027", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "growth cone", "id": "GO:0030426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030426", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "filopodium", "id": "GO:0030175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030175", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "tubulin binding", "id": "GO:0015631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015631", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "netrin receptor activity involved in chemorepulsion", "id": "GO:0005043", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005043", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "netrin receptor activity", "id": "GO:0005042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005042", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "chemorepulsion of axon", "id": "GO:0061643", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061643", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "dorsal root ganglion development", "id": "GO:1990791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990791", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "I3L5H1", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" }, { "start_pos": 483, "end_pos": 485, "annotation": "n_glycosylation_sequon" }, { "start_pos": 519, "end_pos": 521, "annotation": "n_glycosylation_sequon" }, { "start_pos": 643, "end_pos": 645, "annotation": "n_glycosylation_sequon" }, { "start_pos": 812, "end_pos": 814, "annotation": "n_glycosylation_sequon" }, { "start_pos": 905, "end_pos": 907, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5H1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 931, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5H1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5H1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 175, "end_pos": 256, "start_aa": "Gly", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L5H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5H1" }, { "id": "PS51145", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51145" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ZU5", "eco_id": "ECO_0000259", "start_pos": 530, "end_pos": 664, "start_aa": "Cys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 236, "end_pos": 238 }, { "start_pos": 361, "end_pos": 363 }, { "start_pos": 483, "end_pos": 485 }, { "start_pos": 519, "end_pos": 521 }, { "start_pos": 643, "end_pos": 645 }, { "start_pos": 812, "end_pos": 814 }, { "start_pos": 905, "end_pos": 907 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5J3-1", "uniprot_ac": "F2Z5J3", "uniprot_id": "F2Z5J3_PIG", "mass": { "chemical_mass": 26593.0, "monoisotopic_mass": 26593.0 }, "refseq": {}, "gene_names": [ { "name": "CNOT7", "type": "recommended", "evidence": [ { "id": "F2Z5J3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ] } ], "protein_names": [ { "name": "poly(A)-specific ribonuclease", "type": "recommended", "evidence": [ { "id": "F2Z5J3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3/entry#names_and_taxonomy" } ] }, { "name": "3.1.13.4", "type": "synonym", "evidence": [ { "id": "F2Z5J3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNOT7", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3", "locus": { "chromosome": "17", "start_pos": 4933453, "end_pos": 4950346, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006983", "url": "https://www.ensembl.org/id/ENSSSCG00000006983" } ] } } ], "crossref": [ { "id": "F2Z5J3", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5J3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006983", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006983", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154442", "url": "https://www.ncbi.nlm.nih.gov/gene/100154442", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039637", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039637", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154442", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154442", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IKFMMRA", "url": "https://omabrowser.org/oma/group/IKFMMRA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U0W1", "url": "https://www.orthodb.org/?gene=A0A4X1U0W1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10797", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10797", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-429947", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429947", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804115", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804115", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AUY3", "url": "https://www.uniprot.org/uniprotkb/A0A287AUY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U0W1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0W1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U0W1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0W1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SET4", "url": "https://www.uniprot.org/uniprotkb/F1SET4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SET4-1", "url": "https://www.uniprot.org/uniprotkb/F1SET4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5J3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS", "length": 231, "header": "tr|F2Z5J3-1|F2Z5J3_PIG Isoform 1 of poly(A)-specific ribonuclease OS=Sus scrofa OX=9823 GN=CNOT7 PE=3 SV=4 CANONICAL=F2Z5J3-1" }, "isoforms": [ { "isoform_ac": "A0A287AUY3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3/entry#A0A287AUY3-1", "sequence": { "sequence": "MGHPLPPPLPPPPPPGAVSMARRKRRSASSATQDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS", "length": 279, "header": "tr|A0A287AUY3-1|F2Z5J3_PIG Computationally mapped isoform of poly(A)-specific ribonuclease OS=Sus scrofa OX=9823 GN=CNOT7 PE=3 SV=1 CANONICAL=F2Z5J3-1" }, "locus": { "chromosome": "17", "start_pos": 4949505, "end_pos": 4934981, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042803.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042803.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047920.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047920.1" } ] } }, { "isoform_ac": "A0A4X1U0W1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3/entry#A0A4X1U0W1-1", "sequence": { "sequence": "MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS", "length": 285, "header": "tr|A0A4X1U0W1-1|F2Z5J3_PIG Computationally mapped isoform of poly(A)-specific ribonuclease OS=Sus scrofa OX=9823 GN=CNOT7 PE=3 SV=1 CANONICAL=F2Z5J3-1" }, "locus": { "chromosome": "17", "start_pos": 4947818, "end_pos": 4934981, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038577.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038577.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039703.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039703.1" } ] } }, { "isoform_ac": "F1SET4-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3/entry#F1SET4-1", "sequence": { "sequence": "MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREV", "length": 244, "header": "tr|F1SET4-1|F2Z5J3_PIG Computationally mapped isoform of poly(A)-specific ribonuclease OS=Sus scrofa OX=9823 GN=CNOT7 PE=3 SV=4 CANONICAL=F2Z5J3-1" }, "locus": { "chromosome": "17", "start_pos": 4947818, "end_pos": 4936702, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007651.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007651.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007444.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007444.4" } ] } }, { "isoform_ac": "F2Z5J3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3/entry#F2Z5J3-1", "sequence": { "sequence": "MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS", "length": 231, "header": "tr|F2Z5J3-1|F2Z5J3_PIG Isoform 1 of poly(A)-specific ribonuclease OS=Sus scrofa OX=9823 GN=CNOT7 PE=3 SV=4 CANONICAL=F2Z5J3-1" }, "locus": { "chromosome": "17", "start_pos": 4947818, "end_pos": 4934981, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007648.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007648.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007441.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007441.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U0W1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U0W1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154442", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154442", "resource": "KEGG Pathway" }, { "id": "R-SSC-429947", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429947", "resource": "Reactome", "description": "Deadenylation of mRNA" }, { "id": "R-SSC-6804115", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804115", "resource": "Reactome", "description": "TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IJ57-1", "protein_name": "poly(A)-specific ribonuclease", "gene_name": "Cnot7", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTSGTAMGPGNPYFWEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS", "length": 298 }, "evidence": [ { "id": "F2Z5J3", "url": "https://omabrowser.org/oma/group/F2Z5J3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q08BM8-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "cnot7", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPAATVDHSQRICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQQS", "length": 286 }, "evidence": [ { "id": "F2Z5J3", "url": "https://omabrowser.org/oma/group/F2Z5J3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3ZC01-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEASKQS", "length": 285 }, "evidence": [ { "id": "F2Z5J3", "url": "https://omabrowser.org/oma/group/F2Z5J3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54PZ4-1", "protein_name": "poly(A)-specific ribonuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVTLHTDEIKDVWGYNLDEEMEKIRNLVDDYNYIAMDTEFPGIVTRPVGNFRSTSDYHYQTLRLNVDQLKIIQLGLTFSDSEGNLAKPTCTWQFNFKFSLSEDMYAQDSIDLLSRSGIEFKKNEANGIDILDFGEQLMSSGIVLNDNIKWISFHSGYDFGYLLKSLTCTVLPLDEADFFGSARTYFPCIYDIKYIMKSCKNLKGGLSELADDLDIKRIGPQHQAGSDSLLTSTTFFKMRKMFFENQLDDSKYLNILYGLSSFGPDGTPTNIHTGAGNNPPPQLSNSGSTNYGYSPLSQQNNPNNITNYNSTNPASQNQPTYYNNYPTTPTRYHNSSGPYSPTGNNLSMSQPNTPSKNNSNDYYHKKS", "length": 367 }, "evidence": [ { "id": "F2Z5J3", "url": "https://omabrowser.org/oma/group/F2Z5J3/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q60809-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "Cnot7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEASKQS", "length": 285 }, "evidence": [ { "id": "F2Z5J3", "url": "https://omabrowser.org/oma/group/F2Z5J3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UIV1-1", "protein_name": "CCR4-NOT transcription complex subunit 7", "gene_name": "CNOT7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPAATVDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEANKQS", "length": 285 }, "evidence": [ { "id": "F2Z5J3", "url": "https://omabrowser.org/oma/group/F2Z5J3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "X2JCC3-1", "protein_name": "poly(A)-specific ribonuclease", "gene_name": "Pop2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKWTMPSAISGAPHAHIPSNEECGIRDVWKQNLEEEFRTIRKVVQKYHYVAMDTEFPGVVARPVGEFRSTADYHYQLLRCNVDLLRIIQLGLTFMDDDGKTPPGYSTWQFNFKFNLSEDMYAQDSIDLLQNSGIQFKKHEEDGIDPIDFAELLMSSGIVLVENIKWLCFHSGYDFGYLLKLLTDQNLPPDESEFFDLLHIYFPNIFDIKYLMKSCKNLKGGLQEVADQLELRRVGPQHQAGSDALLTGMAFFKMREVQHTNDFHITPVAHDVLFRYLLEHTMNLKPTISCIHLLSRPAYNGGPAPDESAIISSGNGTGNTNSTEQFTSSAYMVTPPNTPGMAKSDAASLSNRHTSISNSFG", "length": 361 }, "evidence": [ { "id": "F2Z5J3", "url": "https://omabrowser.org/oma/group/F2Z5J3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "poly(A)-specific ribonuclease activity", "id": "GO:0004535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004535", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "piRNA binding", "id": "GO:0034584", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034584", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "DNA-binding transcription factor binding", "id": "GO:0140297", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140297", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "CCR4-NOT complex", "id": "GO:0030014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030014", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "CCR4-NOT core complex", "id": "GO:0030015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030015", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 15, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "regulation of translation", "id": "GO:0006417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006417", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "regulatory ncRNA-mediated gene silencing", "id": "GO:0031047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031047", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "deadenylation-dependent decapping of nuclear-transcribed mRNA", "id": "GO:0000290", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000290", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "negative regulation of cell population proliferation", "id": "GO:0008285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008285", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "miRNA-mediated gene silencing by mRNA destabilization", "id": "GO:0035279", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035279", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "positive regulation of nuclear-transcribed mRNA poly(A) tail shortening", "id": "GO:0060213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060213", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay", "id": "GO:1900153", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900153", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "positive regulation of viral genome replication", "id": "GO:0045070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045070", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "negative regulation of type I interferon-mediated signaling pathway", "id": "GO:0060339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060339", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay", "id": "GO:0000288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000288", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "nuclear-transcribed mRNA poly(A) tail shortening", "id": "GO:0000289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000289", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" }, { "name": "piRNA-mediated gene silencing by mRNA destabilization", "id": "GO:0140991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140991", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J3", "url": "https://www.uniprot.org/uniprotkb/F2Z5J3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-429955", "name": "CCR4-NOT complex deadenylates mRNA", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-SSC-156803", "R-SSC-429861", "R-SSC-72573" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-429955", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429955" } ] }, { "id": "R-SSC-6798044", "name": "BTG2 binds CCR4-NOT complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6798044", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798044" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-156803", "participant_name": "PABPC1 [cytosol]", "crossref": [ { "id": "ENSSSCT00000032533", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000006063", "database": "ENSEMBL", "url": "" }, { "id": "98829", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000026891", "database": "ENSEMBL", "url": "" }, { "id": "F2Z557", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-429861", "participant_name": "PAIP1 [cytosol]", "crossref": [ { "id": "A0A287AHU1", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000043450", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000065777", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000016874", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-72573", "participant_name": "EIF4A1 [cytosol]", "crossref": [ { "id": "ENSSSCT00000032168", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000017957", "database": "ENSEMBL", "url": "" }, { "id": "98989", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000024903", "database": "ENSEMBL", "url": "" }, { "id": "A6M928", "database": "UniProt", "url": "" }, { "id": "NP_001093666.1", "database": "RefSeq", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5J3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 231, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5J3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5J3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 217, "end_pos": 219 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5U6-1", "uniprot_ac": "I3L5U6", "uniprot_id": "I3L5U6_PIG", "mass": { "chemical_mass": 53106.0, "monoisotopic_mass": 53106.0 }, "refseq": {}, "gene_names": [ { "name": "LBP", "type": "recommended", "evidence": [ { "id": "I3L5U6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ] } ], "protein_names": [ { "name": "Lipopolysaccharide-binding protein", "type": "recommended", "evidence": [ { "id": "I3L5U6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U6/entry#names_and_taxonomy" } ] }, { "name": "LBP", "type": "synonym", "evidence": [ { "id": "I3L5U6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a role in the innate immune response. Binds to the lipid A moiety of bacterial lipopolysaccharides (LPS), a glycolipid present in the outer membrane of all Gram-negative bacteria. Acts as an affinity enhancer for CD14, facilitating its association with LPS. Promotes the release of cytokines in response to bacterial lipopolysaccharide.", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6#function" }, { "database": "UniProtKB", "id": "RU369039", "url": "https://www.uniprot.org/uniprotkb/RU369039#function" }, { "database": "UniProtKB", "id": "ARBA00045486", "url": "https://www.uniprot.org/uniprotkb/ARBA00045486#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LBP", "url": "https://www.uniprot.org/uniprotkb/I3L5U6", "locus": { "chromosome": "17", "start_pos": 41429551, "end_pos": 41398791, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028758", "url": "https://www.ensembl.org/id/ENSSSCG00000028758" } ] } } ], "crossref": [ { "id": "I3L5U6", "url": "https://alphafold.ebi.ac.uk/entry/I3L5U6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028758", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028758", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00025", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00025", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00026", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00026", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10504", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10504", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10504:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10504:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01273", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01273", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02886", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02886", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5U6-1", "url": "https://www.uniprot.org/uniprotkb/I3L5U6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGASAGALPSLLLGILLTSILGSLGANPGLVARITNKGLEYVAREGVATLQSKLHEVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCELLGSTLTPLPGQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVPRLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATNVSAALTFNTSKITGFLKPGKIQMELKESKVGIFNVELLEALLNYYLLNNLYPKVNDKLAEGFPLPLLNYIQLHDPVLQIHKDFLLLGTNIRYLRV", "length": 481, "header": "tr|I3L5U6-1|I3L5U6_PIG Isoform 1 of Lipopolysaccharide-binding protein OS=Sus scrofa OX=9823 GN=LBP PE=1 SV=4 CANONICAL=I3L5U6-1" }, "isoforms": [ { "isoform_ac": "I3L5U6-1", "url": "https://www.uniprot.org/uniprotkb/I3L5U6/entry#I3L5U6-1", "sequence": { "sequence": "MGASAGALPSLLLGILLTSILGSLGANPGLVARITNKGLEYVAREGVATLQSKLHEVTLPDFNGDFKIKYMGRGHYEFHSLDIHSCELLGSTLTPLPGQGLYLAISDSSIRVKGKWKVRKGILKLDGSFDVKVKGITISVNLLLGSESSGRPTVAVSSCSSHIDDVETHMSGDLSWLLNLFHNQIESRFRRTLESKICEEIQDLVASDLQPYLQTVPVTTEIDNLAGIDYSLVEAPRATAQMLDVMIKGEIFSLDHRSPVGFLAPVMRLPEEHSRMVYFAVSDYVFKTASLVYNEAGFLNFSITDDLVPPTSNIRLTTNSFRTFVPRLARLYPNMNLELRGAMVSAPFLNFGSGNLSSTPQIEVEGFVLLPNSVREPVFRLGMATNVSAALTFNTSKITGFLKPGKIQMELKESKVGIFNVELLEALLNYYLLNNLYPKVNDKLAEGFPLPLLNYIQLHDPVLQIHKDFLLLGTNIRYLRV", "length": 481, "header": "tr|I3L5U6-1|I3L5U6_PIG Isoform 1 of Lipopolysaccharide-binding protein OS=Sus scrofa OX=9823 GN=LBP PE=1 SV=4 CANONICAL=I3L5U6-1" }, "locus": { "chromosome": "17", "start_pos": 41429215, "end_pos": 41398972, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032321.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032321.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019396.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019396.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 16, "go_terms": [ { "name": "positive regulation of macrophage activation", "id": "GO:0043032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043032", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "defense response to Gram-negative bacterium", "id": "GO:0050829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050829", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "defense response to Gram-positive bacterium", "id": "GO:0050830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050830", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "acute-phase response", "id": "GO:0006953", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006953", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "negative regulation of tumor necrosis factor production", "id": "GO:0032720", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032720", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "positive regulation of interleukin-6 production", "id": "GO:0032755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032755", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "positive regulation of tumor necrosis factor production", "id": "GO:0032760", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032760", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "positive regulation of interleukin-8 production", "id": "GO:0032757", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032757", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "lipopolysaccharide-mediated signaling pathway", "id": "GO:0031663", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031663", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "positive regulation of toll-like receptor 4 signaling pathway", "id": "GO:0034145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034145", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "detection of molecule of bacterial origin", "id": "GO:0032490", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032490", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "lipopolysaccharide transport", "id": "GO:0015920", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015920", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "positive regulation of respiratory burst involved in inflammatory response", "id": "GO:0060265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060265", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "cell surface pattern recognition receptor signaling pathway", "id": "GO:0002752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002752", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "macrophage activation involved in immune response", "id": "GO:0002281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002281", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "coreceptor activity", "id": "GO:0015026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015026", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "lipopolysaccharide binding", "id": "GO:0001530", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001530", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "lipopeptide binding", "id": "GO:0071723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071723", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "lipoteichoic acid binding", "id": "GO:0070891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070891", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "I3L5U6", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 300, "end_pos": 302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 355, "end_pos": 357, "annotation": "n_glycosylation_sequon" }, { "start_pos": 386, "end_pos": 388, "annotation": "n_glycosylation_sequon" }, { "start_pos": 394, "end_pos": 396, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5U6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 481, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5U6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5U6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5U6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" }, { "id": "SM00329", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00329" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipid-binding serum glycoprotein C-terminal", "eco_id": "ECO_0000259", "start_pos": 271, "end_pos": 474, "start_aa": "Glu", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L5U6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U6" }, { "id": "SM00328", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00328" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipid-binding serum glycoprotein N-terminal", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 256, "start_aa": "Arg", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 300, "end_pos": 302 }, { "start_pos": 355, "end_pos": 357 }, { "start_pos": 386, "end_pos": 388 }, { "start_pos": 394, "end_pos": 396 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5K1-1", "uniprot_ac": "F2Z5K1", "uniprot_id": "F2Z5K1_PIG", "mass": { "chemical_mass": 125778.0, "monoisotopic_mass": 125778.0 }, "refseq": { "ac": "XP_020954990", "name": "solute carrier family 12 member 6 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954990" }, "gene_names": [ { "name": "SLC12A6", "type": "recommended", "evidence": [ { "id": "F2Z5K1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1" } ] }, { "name": "SLC12A6", "type": "synonym", "evidence": [ { "id": "XP_020954990", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954990" } ] } ], "protein_names": [ { "name": "Solute carrier family 12 member 6", "type": "synonym", "evidence": [ { "id": "F2Z5K1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 12 member 6 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020954990", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954990" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5K1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC12A6", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1", "locus": { "chromosome": "7", "start_pos": 80268323, "end_pos": 80164911, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002243", "url": "https://www.ensembl.org/id/ENSSSCG00000002243" } ] } } ], "crossref": [ { "id": "F2Z5K1", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5K1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002243", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002243", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156993", "url": "https://www.ncbi.nlm.nih.gov/gene/100156993", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000076", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000076", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004842", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004842", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018491", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018491", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11827", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11827", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11827:SF66", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11827:SF66", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00324", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00324", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03522", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03522", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020954990", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020954990", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "72427", "url": "https://www.rhea-db.org/rhea/72427", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ABC3", "url": "https://www.uniprot.org/uniprotkb/A0A287ABC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJ04", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJ04-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCL6", "url": "https://www.uniprot.org/uniprotkb/F1SCL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SCL6-1", "url": "https://www.uniprot.org/uniprotkb/F1SCL6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5K1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5K1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHPPETTAKMASVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVRFSSRESVPETSRSEPMSEMSGATTSLATVALDPASDRTSNPPDATEDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLNRLANYTNLTQGAKEHEEAENITEGKKKATKTPQMGTFMGVYLPCLQNIFGVILFLRLTWVVGTAGVLQAFAIVLICCCCTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGTTFAAAMYILGAIEIFLVYIVPRAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHIDVCSKTKEINNMTVPSKLWGFFCNSSHFFNATCDEYFIHNNVTSIQGIPGLASGVITENLWSNYLPKGEIIEKPSAKSSDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGEALAAEQTIKHLMEAEKVKGFSQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIGSDEDDETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS", "length": 1135, "header": "tr|F2Z5K1-1|F2Z5K1_PIG Isoform 1 of Solute carrier family 12 member 6 OS=Sus scrofa OX=9823 GN=SLC12A6 PE=3 SV=3 CANONICAL=F2Z5K1-1" }, "isoforms": [ { "isoform_ac": "A0A287ABC3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1/entry#A0A287ABC3-1", "sequence": { "sequence": "MHPPETTAKMASVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVRFSSRESVPETSRSEPMSEMSGATTSLATVALDPASDRTSNPPDATEDPSQNSITGEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLNRLANYTNLTQGAKEHEEAENITEGKKKATKTPQMGTFMGVYLPCLQNIFGVILFLRLTWVVGTAGVLQAFAIVLICCCCVSPKLAPGDHLEHSGGSYFMISRALGPEFGGAVGLCFYLGTTFAAAMYILGAIEIFLVYIVPRAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHIDVCSKTKEINNMTVPSKLWGFFCNSSHFFNATCDEYFIHNNVTSIQGIPGLASGVITENLWSNYLPKGEIIEKPSAKSSDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGEALAAEQTIKHLMEAEKVKGFSQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIGSDEDDETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS", "length": 1145, "header": "tr|A0A287ABC3-1|F2Z5K1_PIG Computationally mapped isoform of Solute carrier family 12 member 6 OS=Sus scrofa OX=9823 GN=SLC12A6 PE=3 SV=1 CANONICAL=F2Z5K1-1" }, "locus": { "chromosome": "7", "start_pos": 80263342, "end_pos": 80166162, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044837.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044837.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041272.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041272.2" } ] } }, { "isoform_ac": "A0A287BJ04-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1/entry#A0A287BJ04-1", "sequence": { "sequence": "MHPPETTAKMASVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVRFSSRESVPETSRSEPMSEMSGATTSLATVALDPASDRTSNPPDATEDPSQNSITGEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLNRLANYTNLTQGAKEHEEAENITEGKKKATKTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGTTFAAAMYILGAIEIFLVYIVPRAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHIDVCSKTKEINNMTVPSKLWGFFCNSSHFFNATCDEYFIHNNVTSIQGIPGLASGVITENLWSNYLPKGEIIEKPSAKSSDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGEALAAEQTIKHLMEAEKVKGFSQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIGSDEDDETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS", "length": 1101, "header": "tr|A0A287BJ04-1|F2Z5K1_PIG Computationally mapped isoform of Solute carrier family 12 member 6 OS=Sus scrofa OX=9823 GN=SLC12A6 PE=3 SV=2 CANONICAL=F2Z5K1-1" }, "locus": { "chromosome": "7", "start_pos": 80263342, "end_pos": 80166162, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054913.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054913.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056354.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056354.3" } ] } }, { "isoform_ac": "F1SCL6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1/entry#F1SCL6-1", "sequence": { "sequence": "MPHFTVTKVEDPEEGAASSVSQEGEPSLAEVKARIQHSDEPDPSQNSITGEHSQLLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLNRLANYTNLTQGAKEHEEAENITEGKKKATKTPQMGTFMGVYLPCLQNIFGVILFLRLTWVVGTAGVLQAFAIVLICCCCTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGTTFAAAMYILGAIEIFLVYIVPRAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHIDVCSKTKEINNMTVPSKLWGFFCNSSHFFNATCDEYFIHNNVTSIQGIPGLASGVITENLWSNYLPKGEIIEKPSAKSSDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGEALAAEQTIKHLMEAEKVKGFSQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIGSDEDDETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS", "length": 1101, "header": "tr|F1SCL6-1|F2Z5K1_PIG Computationally mapped isoform of Solute carrier family 12 member 6 OS=Sus scrofa OX=9823 GN=SLC12A6 PE=3 SV=3 CANONICAL=F2Z5K1-1" }, "locus": { "chromosome": "7", "start_pos": 80263342, "end_pos": 80191973, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002498.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002498.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002436.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002436.3" } ] } }, { "isoform_ac": "F2Z5K1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1/entry#F2Z5K1-1", "sequence": { "sequence": "MHPPETTAKMASVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVRFSSRESVPETSRSEPMSEMSGATTSLATVALDPASDRTSNPPDATEDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLNRLANYTNLTQGAKEHEEAENITEGKKKATKTPQMGTFMGVYLPCLQNIFGVILFLRLTWVVGTAGVLQAFAIVLICCCCTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGTTFAAAMYILGAIEIFLVYIVPRAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFIGVRYVNKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHIDVCSKTKEINNMTVPSKLWGFFCNSSHFFNATCDEYFIHNNVTSIQGIPGLASGVITENLWSNYLPKGEIIEKPSAKSSDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLVVGTLSWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLLTAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWALSFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFALLRLEEGPPHTKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGNFLENYGEALAAEQTIKHLMEAEKVKGFSQLVVAAKLREGISHLIQSCGLGGMKHNTVVMGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWWIVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIGSDEDDETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVKLNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVITIYS", "length": 1135, "header": "tr|F2Z5K1-1|F2Z5K1_PIG Isoform 1 of Solute carrier family 12 member 6 OS=Sus scrofa OX=9823 GN=SLC12A6 PE=3 SV=3 CANONICAL=F2Z5K1-1" }, "locus": { "chromosome": "7", "start_pos": 80263342, "end_pos": 80166162, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029279.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029279.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023707.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023707.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SCL6", "url": "https://www.uniprot.org/uniprotkb/F1SCL6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "potassium:chloride symporter activity", "id": "GO:0015379", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015379", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1" } ], "pmid": "" }, { "name": "chloride:monoatomic cation symporter activity", "id": "GO:0015377", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015377", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1081, "end_pos": 1083, "annotation": "n_glycosylation_sequon" }, { "start_pos": 140, "end_pos": 142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" }, { "start_pos": 156, "end_pos": 158, "annotation": "n_glycosylation_sequon" }, { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 383, "end_pos": 385, "annotation": "n_glycosylation_sequon" }, { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" }, { "start_pos": 489, "end_pos": 491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 880, "end_pos": 882, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "72427", "name": "", "equation": "K(+)(in) + chloride(in) = K(+)(out) + chloride(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "72427", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/72427" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5K1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1135, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5K1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5K1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5K1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1" }, { "id": "PF00324", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00324" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Amino acid permease/ SLC12A", "eco_id": "ECO_0000259", "start_pos": 176, "end_pos": 348, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z5K1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5K1" }, { "id": "PF03522", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03522" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SLC12A transporter C-terminal", "eco_id": "ECO_0000259", "start_pos": 759, "end_pos": 877, "start_aa": "Pro", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 1081, "end_pos": 1083 }, { "start_pos": 140, "end_pos": 142 }, { "start_pos": 143, "end_pos": 145 }, { "start_pos": 156, "end_pos": 158 }, { "start_pos": 364, "end_pos": 366 }, { "start_pos": 383, "end_pos": 385 }, { "start_pos": 396, "end_pos": 398 }, { "start_pos": 402, "end_pos": 404 }, { "start_pos": 413, "end_pos": 415 }, { "start_pos": 489, "end_pos": 491 }, { "start_pos": 880, "end_pos": 882 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6Q497-1", "uniprot_ac": "F6Q497", "uniprot_id": "F6Q497_PIG", "mass": { "chemical_mass": 34838.0, "monoisotopic_mass": 34838.0 }, "refseq": {}, "gene_names": [ { "name": "ATXN3", "type": "recommended", "evidence": [ { "id": "F6Q497", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ] } ], "protein_names": [ { "name": "ubiquitinyl hydrolase 1", "type": "recommended", "evidence": [ { "id": "F6Q497", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "F6Q497", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATXN3", "url": "https://www.uniprot.org/uniprotkb/F6Q497", "locus": {} } ], "crossref": [ { "id": "F6Q497", "url": "https://alphafold.ebi.ac.uk/entry/F6Q497", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002446", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002446", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006155", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006155", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14159:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14159:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02099", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02099", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02809", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02809", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16619", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16619", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689877", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689877", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9615017", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9615017", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QH58", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QH58-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QH58-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLI6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QLI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QLI6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM94", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QM94-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QM94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5Y5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5Y5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9D3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9D3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLI1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1VQ37", "url": "https://www.uniprot.org/uniprotkb/A0A8D1VQ37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1VQ37-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1VQ37-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q497-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFENHNSEVYEGKF", "length": 301, "header": "tr|F6Q497-1|F6Q497_PIG Isoform 1 of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=2 CANONICAL=F6Q497-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QH58-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#A0A5G2QH58-1", "sequence": { "sequence": "MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFEMQQQQQQQDPPGPLTHPCEKPTTSSEALSSELGDAMSEEDMLQAAVTMSLETVRNNFKTEGKK", "length": 353, "header": "tr|A0A5G2QH58-1|F6Q497_PIG Computationally mapped isoform of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=1 CANONICAL=F6Q497-1" }, "locus": { "chromosome": "7", "start_pos": 113645772, "end_pos": 113613521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080642.1", "url": "https://www.ensembl.org/id/ENSSSCT00000080642.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064118.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064118.1" } ] } }, { "isoform_ac": "A0A5G2QLI6-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#A0A5G2QLI6-1", "sequence": { "sequence": "TLVIYHGIQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQLTWLYYLNWNFYNLPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFEKQQQQQQQDPPGPLTHPCEKPTTSSEALSSELGDAMSEEDMLQAAVTMSLETVRNNFKTEGKK", "length": 334, "header": "tr|A0A5G2QLI6-1|F6Q497_PIG Computationally mapped isoform of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=1 CANONICAL=F6Q497-1" }, "locus": { "chromosome": "7", "start_pos": 113639839, "end_pos": 113613521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085315.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085315.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064900.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064900.1" } ] } }, { "isoform_ac": "A0A5G2QM94-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#A0A5G2QM94-1", "sequence": { "sequence": "MESIFHEKQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFEKQQQQQQQDPPGPLTHPCEKPTTSSEALSSELGDAMSEEDMLQAAVTMSLETVRNNFKTEGKK", "length": 298, "header": "tr|A0A5G2QM94-1|F6Q497_PIG Computationally mapped isoform of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=1 CANONICAL=F6Q497-1" }, "locus": { "chromosome": "7", "start_pos": 113645772, "end_pos": 113613521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090730.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090730.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065155.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065155.1" } ] } }, { "isoform_ac": "A0A5G2QPL0-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#A0A5G2QPL0-1", "sequence": { "sequence": "MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFEKQQQQQQQDPPGPLTHPCEKPTTSSEALSSELGTPPPYVPFVTCKLCLTHRLLVIWALYFFLSSF", "length": 355, "header": "tr|A0A5G2QPL0-1|F6Q497_PIG Computationally mapped isoform of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=2 CANONICAL=F6Q497-1" }, "locus": { "chromosome": "7", "start_pos": 113645772, "end_pos": 113617041, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069172.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069172.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060222.2", "url": "https://www.ensembl.org/id/ENSSSCP00000060222.2" } ] } }, { "isoform_ac": "A0A5G2R5Y5-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#A0A5G2R5Y5-1", "sequence": { "sequence": "MESIFHEKVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFEKQQQQQQQDPPGPLTHPCEKPTTSSEALSSELGDAMSEEDMLQAAVTMSLETVRNNFKTEGKK", "length": 283, "header": "tr|A0A5G2R5Y5-1|F6Q497_PIG Computationally mapped isoform of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=1 CANONICAL=F6Q497-1" }, "locus": { "chromosome": "7", "start_pos": 113645772, "end_pos": 113613521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077070.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077070.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072504.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072504.1" } ] } }, { "isoform_ac": "A0A5G2R9D3-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#A0A5G2R9D3-1", "sequence": { "sequence": "MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFEKQQQQQQQDPPGPLTHPCEKPTTSSEALSSELGDAMSEEDMLQAAVTMSLETVRNNFKTEGKK", "length": 338, "header": "tr|A0A5G2R9D3-1|F6Q497_PIG Computationally mapped isoform of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=1 CANONICAL=F6Q497-1" }, "locus": { "chromosome": "7", "start_pos": 113645772, "end_pos": 113613521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073297.1", "url": "https://www.ensembl.org/id/ENSSSCT00000073297.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073681.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073681.1" } ] } }, { "isoform_ac": "A0A5G2RLI1-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#A0A5G2RLI1-1", "sequence": { "sequence": "MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFEKQQQQQQQDPPGPLTHPCEKPTTSSEALSSELGDAMSEEDMLQAAVTMSLETVRNNFKTEGKK", "length": 302, "header": "tr|A0A5G2RLI1-1|F6Q497_PIG Computationally mapped isoform of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=1 CANONICAL=F6Q497-1" }, "locus": { "chromosome": "7", "start_pos": 113645772, "end_pos": 113613521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079284.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079284.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073188.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073188.1" } ] } }, { "isoform_ac": "A0A8D1VQ37-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#A0A8D1VQ37-1", "sequence": { "sequence": "MVLEKRWLVVIQMLQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFEKQQQQQQQDPPGPLTHPCEKPTTSSEALSSELGDAMSEEDMLQAAVTMSLETVRNNFKTEGKK", "length": 359, "header": "tr|A0A8D1VQ37-1|F6Q497_PIG Computationally mapped isoform of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=1 CANONICAL=F6Q497-1" }, "locus": { "chromosome": "7", "start_pos": 113642486, "end_pos": 113613521, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086270.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086270.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074550.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074550.1" } ] } }, { "isoform_ac": "F6Q497-1", "url": "https://www.uniprot.org/uniprotkb/F6Q497/entry#F6Q497-1", "sequence": { "sequence": "MESIFHEKQEGSLCAQHCLNNLLQGEYFSPVELSSIAHQLDEEERMRMAEGGVTSEDYRTFLQQPSGNMDDSGFFSIQVISNALKVWGLELILFNSPEYQRLRIDPINERSFICNYKEHWFTVRKLGKQWFNLNSLLTGPELISDTYLALFLAQLQQEGYSIFVVKGDLPDCEADQLLQMIRVQQMQRPKLIGEELAQLKEQRVQKTDLERVLEANDGSGMLDEDEEDLQRALALSRQEIDMEDEEADLRRAIQLSMQGTSRNISQDIPQTSGTHLTSEELRKRREAYFENHNSEVYEGKF", "length": 301, "header": "tr|F6Q497-1|F6Q497_PIG Isoform 1 of ubiquitinyl hydrolase 1 OS=Sus scrofa OX=9823 GN=ATXN3 PE=4 SV=2 CANONICAL=F6Q497-1" }, "locus": { "chromosome": "7", "start_pos": 113645772, "end_pos": 113623932, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002716.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002716.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002647.4", "url": "https://www.ensembl.org/id/ENSSSCP00000002647.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1VQ37", "url": "https://www.uniprot.org/uniprotkb/A0A8D1VQ37" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5689877", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689877", "resource": "Reactome", "description": "Josephin domain DUBs" }, { "id": "R-SSC-9615017", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9615017", "resource": "Reactome", "description": "FOXO-mediated transcription of oxidative stress, metabolic and neuronal genes" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "nuclear inclusion body", "id": "GO:0042405", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042405", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 14, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "protein deubiquitination", "id": "GO:0016579", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016579", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "protein K63-linked deubiquitination", "id": "GO:0070536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070536", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "cellular response to amino acid starvation", "id": "GO:0034198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034198", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "positive regulation of ERAD pathway", "id": "GO:1904294", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904294", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "protein quality control for misfolded or incompletely synthesized proteins", "id": "GO:0006515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006515", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "monoubiquitinated protein deubiquitination", "id": "GO:0035520", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035520", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "protein K48-linked deubiquitination", "id": "GO:0071108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071108", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "cellular response to misfolded protein", "id": "GO:0071218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071218", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "negative regulation of TORC1 signaling", "id": "GO:1904262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904262", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "positive regulation of ubiquitin-dependent protein catabolic process", "id": "GO:2000060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000060", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "protein localization to cytosolic proteasome complex", "id": "GO:1904327", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904327", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "ATPase binding", "id": "GO:0051117", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051117", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "ubiquitin protein ligase binding", "id": "GO:0031625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031625", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "K63-linked deubiquitinase activity", "id": "GO:0061578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061578", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" }, { "name": "K48-linked deubiquitinase activity", "id": "GO:1990380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990380", "evidence": [ { "database": "UniProtKB", "id": "F6Q497", "url": "https://www.uniprot.org/uniprotkb/F6Q497" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-5688786", "name": "ATXN3 binds RAD23", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5688786", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5688786" } ] }, { "id": "R-SSC-5688797", "name": "ATXN3 family cleave Ub chains", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5688797", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5688797" } ] }, { "id": "R-SSC-5688834", "name": "ATXN3 binds VCP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5688834", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5688834" } ] }, { "id": "R-SSC-9617927", "name": "FOXO4 binds ATXN3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9617927", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9617927" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6Q497-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 301, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6Q497-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6Q497" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F6Q497", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q497" }, { "id": "PS50957", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50957" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Josephin", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 180, "start_aa": "Met", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 263, "end_pos": 265 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUN1-1", "uniprot_ac": "F1SUN1", "uniprot_id": "F1SUN1_PIG", "mass": { "chemical_mass": 76513.0, "monoisotopic_mass": 76513.0 }, "refseq": {}, "gene_names": [ { "name": "SLCO2B1", "type": "recommended", "evidence": [ { "id": "F1SUN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ] } ], "protein_names": [ { "name": "Solute carrier organic anion transporter family member", "type": "recommended", "evidence": [ { "id": "F1SUN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUN1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLCO2B1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1", "locus": { "chromosome": "9", "start_pos": 9474230, "end_pos": 9427121, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014851", "url": "https://www.ensembl.org/id/ENSSSCG00000014851" } ] } } ], "crossref": [ { "id": "F1SUN1", "url": "https://alphafold.ebi.ac.uk/entry/F1SUN1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014851", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014851", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11388", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11388", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11388:SF87", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11388:SF87", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03137", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03137", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07648", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07648", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-189483", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189483", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-879518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-879518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9749641", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9749641", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9754706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9754706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AAF4", "url": "https://www.uniprot.org/uniprotkb/A0A287AAF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AAF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AAF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPRIGPVGEALQVPDKDTKAMMGTEDTPGGKASLHPQDLRPSVFHSIKFFVLCHSLLQLAQLMISGYLKSSISTVEKRFGLSSQTSGLLAAFNEVGNTALIVFVSYFGSRVHRPRLIGYGALLVTVAGVLMTVPHFISEPYRYDHTSPADLSQDFEASLCLPTRKAPAPAPALSNSSCSGSTEVQHLAVVGIMFTAQTLLGVGGVPIQPFGISYIDDFAHSSNSPLYLGILFAVTMMGPGMAYGLGGLMLRLYVDIDRMPAGGISLTSKDRWVGAWWLGFLISAGAVALAAIPYFFFPKEMPKEKHELRFRRKVLAVSDSPVSKGEDSPSEQSPGASPEKKDGLAQMAPDLTVIQFIKVFPRVLLRTLRHPIFLLVVLSQVCMSSMVAGMATFLPKFLERQFSVTASYANLLIGCLTIPLAILGIVAGGILVKRLRLGPMHCGILCLLGALLCLLLSTPLFFMGCSTHHIAGINHQPGAQPGLELFPGCMEPCSCPSDDFNPVCDSSARVEYLTPCHAGCTSRLVQEARDKSQVFYTNCSCVAGGGPVPAGSCESCSHLVLPFMILVSLGAAVASVTHTPSFMLILRGVKKEDKTLAVGIQFMLQRVLAWMPSPVIHGSAIDTTCVYWAQSCGRRAVCRYYDHDLLRNRFIGLQFFFKTGSLACFALILAILRQQEKEEGTKATMSSPGLQQQLLVSGPKKEPEESRV", "length": 709, "header": "tr|F1SUN1-1|F1SUN1_PIG Isoform 1 of Solute carrier organic anion transporter family member OS=Sus scrofa OX=9823 GN=SLCO2B1 PE=1 SV=5 CANONICAL=F1SUN1-1" }, "isoforms": [ { "isoform_ac": "A0A287AAF4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1/entry#A0A287AAF4-1", "sequence": { "sequence": "MMGTEDTPGGKASLHPQDLRPSVFHSIKFFVLCHSLLQLAQLMISGYLKSSISTVEKRFGLSSQTSGLLAAFNEVGNTALIVFVSYFGSRVHRPRLIGYGALLVTVAGVLMTVPHFISEPYRYDHTSPADLSQDFEASLCLPTRKAPAPAPALSNSSCSGSTEVQHLAVVGIMFTAQTLLGVGGVPIQPFGISYIDDFAHSSNSPLYLGILFAVTMMGPGMAYGLGGLMLRLYVDIDRMPAGGISLTSKDRWVGAWWLGFLISAGAVALAAIPYFFFPKEMPKEKHELRFRRKVLAVSDSPVSKGEDSPSEQSPGASPEKKDGLAQMAPDLTVIQFIKVFPRVLLRTLRHPIFLLVVLSQVCMSSMVAGMATFLPKFLERQFSVTASYANLLIGCLTIPLAILGIVAGGILVKRLRLGPMHCGILCLLGALLCLLLSTPLFFMGCSTHHIAGINHQPGAQPGLELFPGCMEPCSCPSDDFNPVCDSSARVEYLTPCHAGCTSRLVQEARDKSQVFYTNCSCVAGGGPVPAGSCESCSHLVLPFMILVSLGAAVASVTHTPSFMLILRGVKKEDKTLAVGIQFMLQRVLAWMPSPVIHGSAIDTTCVYWAQSCGRRAVCRYYDHDLLRNRFIGLQFFFKTGSLACFALILAILRQQEKEEGTKATMSSPGLQQQLLVSGPKKEPEESRV", "length": 688, "header": "tr|A0A287AAF4-1|F1SUN1_PIG Computationally mapped isoform of Solute carrier organic anion transporter family member OS=Sus scrofa OX=9823 GN=SLCO2B1 PE=1 SV=4 CANONICAL=F1SUN1-1" }, "locus": { "chromosome": "9", "start_pos": 9472616, "end_pos": 9441500, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062517.4", "url": "https://www.ensembl.org/id/ENSSSCT00000062517.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000040773.4", "url": "https://www.ensembl.org/id/ENSSSCP00000040773.4" } ] } }, { "isoform_ac": "F1SUN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1/entry#F1SUN1-1", "sequence": { "sequence": "MGPRIGPVGEALQVPDKDTKAMMGTEDTPGGKASLHPQDLRPSVFHSIKFFVLCHSLLQLAQLMISGYLKSSISTVEKRFGLSSQTSGLLAAFNEVGNTALIVFVSYFGSRVHRPRLIGYGALLVTVAGVLMTVPHFISEPYRYDHTSPADLSQDFEASLCLPTRKAPAPAPALSNSSCSGSTEVQHLAVVGIMFTAQTLLGVGGVPIQPFGISYIDDFAHSSNSPLYLGILFAVTMMGPGMAYGLGGLMLRLYVDIDRMPAGGISLTSKDRWVGAWWLGFLISAGAVALAAIPYFFFPKEMPKEKHELRFRRKVLAVSDSPVSKGEDSPSEQSPGASPEKKDGLAQMAPDLTVIQFIKVFPRVLLRTLRHPIFLLVVLSQVCMSSMVAGMATFLPKFLERQFSVTASYANLLIGCLTIPLAILGIVAGGILVKRLRLGPMHCGILCLLGALLCLLLSTPLFFMGCSTHHIAGINHQPGAQPGLELFPGCMEPCSCPSDDFNPVCDSSARVEYLTPCHAGCTSRLVQEARDKSQVFYTNCSCVAGGGPVPAGSCESCSHLVLPFMILVSLGAAVASVTHTPSFMLILRGVKKEDKTLAVGIQFMLQRVLAWMPSPVIHGSAIDTTCVYWAQSCGRRAVCRYYDHDLLRNRFIGLQFFFKTGSLACFALILAILRQQEKEEGTKATMSSPGLQQQLLVSGPKKEPEESRV", "length": 709, "header": "tr|F1SUN1-1|F1SUN1_PIG Isoform 1 of Solute carrier organic anion transporter family member OS=Sus scrofa OX=9823 GN=SLCO2B1 PE=1 SV=5 CANONICAL=F1SUN1-1" }, "locus": { "chromosome": "9", "start_pos": 9472616, "end_pos": 9427388, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016203.6", "url": "https://www.ensembl.org/id/ENSSSCT00000016203.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015770.6", "url": "https://www.ensembl.org/id/ENSSSCP00000015770.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AAF4", "url": "https://www.uniprot.org/uniprotkb/A0A287AAF4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-189483", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-189483", "resource": "Reactome", "description": "Heme degradation" }, { "id": "R-SSC-879518", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-879518", "resource": "Reactome", "description": "Organic anion transport by SLCO transporters" }, { "id": "R-SSC-9749641", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9749641", "resource": "Reactome", "description": "Aspirin ADME" }, { "id": "R-SSC-9754706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9754706", "resource": "Reactome", "description": "Atorvastatin ADME" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" }, { "name": "apical plasma membrane", "id": "GO:0016324", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016324", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "monoatomic ion transport", "id": "GO:0006811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006811", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" }, { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" }, { "name": "bile acid and bile salt transport", "id": "GO:0015721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015721", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" }, { "name": "sodium-independent organic anion transport", "id": "GO:0043252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043252", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "bile acid transmembrane transporter activity", "id": "GO:0015125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015125", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" }, { "name": "secondary active transmembrane transporter activity", "id": "GO:0015291", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015291", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" }, { "name": "prostaglandin transmembrane transporter activity", "id": "GO:0015132", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015132", "evidence": [ { "database": "UniProtKB", "id": "F1SUN1", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 539, "end_pos": 541, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUN1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 709, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUN1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUN1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUN1" }, { "id": "PS51465", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51465" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kazal-like", "eco_id": "ECO_0000259", "start_pos": 484, "end_pos": 544, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 176, "end_pos": 178 }, { "start_pos": 539, "end_pos": 541 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS98-1", "uniprot_ac": "F1SS98", "uniprot_id": "F1SS98_PIG", "mass": { "chemical_mass": 51484.0, "monoisotopic_mass": 51484.0 }, "refseq": { "ac": "XP_001929700", "name": "ubiquitin carboxyl-terminal hydrolase MINDY-1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929700" }, "gene_names": [ { "name": "MINDY1", "type": "recommended", "evidence": [ { "id": "F1SS98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS98" } ] }, { "name": "MINDY1", "type": "synonym", "evidence": [ { "id": "XP_001929700", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929700" } ] } ], "protein_names": [ { "name": "Ubiquitin carboxyl-terminal hydrolase", "type": "recommended", "evidence": [ { "id": "F1SS98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS98/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "F1SS98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS98/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin carboxyl-terminal hydrolase MINDY-1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001929700", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929700" } ] } ], "function": [ { "annotation": "Hydrolase that can specifically remove 'Lys-48'-linked conjugated ubiquitin from proteins. Has exodeubiquitinase activity and has a preference for long polyubiquitin chains. May play a regulatory role at the level of protein turnover.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABN0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABN0#function" }, { "database": "UniProtKB", "id": "ARBA00037741", "url": "https://www.uniprot.org/uniprotkb/ARBA00037741#function" }, { "database": "UniProtKB", "id": "RU367139", "url": "https://www.uniprot.org/uniprotkb/RU367139#function" }, { "database": "UniProtKB", "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MINDY1", "url": "https://www.uniprot.org/uniprotkb/F1SS98", "locus": { "chromosome": "4", "start_pos": 98234332, "end_pos": 98218742, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006642", "url": "https://www.ensembl.org/id/ENSSSCG00000006642" } ] } } ], "crossref": [ { "id": "F1SS98", "url": "https://alphafold.ebi.ac.uk/entry/F1SS98", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006642", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006642", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153890", "url": "https://www.ncbi.nlm.nih.gov/gene/100153890", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007518", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007518", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153890", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153890", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HTRFSNE", "url": "https://omabrowser.org/oma/group/HTRFSNE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SS98", "url": "https://www.orthodb.org/?gene=F1SS98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18063", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18063", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18063:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18063:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001929700", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929700", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ABN0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABN0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS98-1", "url": "https://www.uniprot.org/uniprotkb/F1SS98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEHHQPEHPASGKAGIAEAVSPENHEVPSEPDEHPQDKDAREADGAAGEQEPEDQASLLAQGHDNLESPPPDASSCQTGPAQGTWPEVETVGACSRPQELPQSPRARQPELDFYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGDCLLSIKPQEKSEGLQLNFQQNVEDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMIKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGRGSPENQRQVDQDYLIALSLQQQQPPPQGTSGLSDLELAQQLQQEEYQQHQAAQPVPAPAPSLQGRGATSGRPAAERRQRPKQESDCVLL", "length": 469, "header": "tr|F1SS98-1|F1SS98_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase OS=Sus scrofa OX=9823 GN=MINDY1 PE=1 SV=1 CANONICAL=F1SS98-1" }, "isoforms": [ { "isoform_ac": "A0A287ABN0-1", "url": "https://www.uniprot.org/uniprotkb/F1SS98/entry#A0A287ABN0-1", "sequence": { "sequence": "MEHHQPEHPASGKAGIAEAVSPENHEVPSEPDEHPQDKDAREADGAAGEQEPEDQASLLAQGHDNLESPPPDASSCQTGPAQGTWPEVETVGACSRPQELPQSPRARQPELDFYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGDCLLSIKPQEKSEGLQLNFQQSPEAVSAVGKLSYNQLVEKIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMIKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGRGSPENQRQVDQDYLIALSLQQQQPPPQGTSGLSDLELAQQLQQEEYQQHQAAQPVPAPAPSLQGRGATSGRPAAERRQRPKQESDCVLL", "length": 416, "header": "tr|A0A287ABN0-1|F1SS98_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase OS=Sus scrofa OX=9823 GN=MINDY1 PE=1 SV=1 CANONICAL=F1SS98-1" }, "locus": { "chromosome": "4", "start_pos": 98230902, "end_pos": 98223959, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038515.3", "url": "https://www.ensembl.org/id/ENSSSCT00000038515.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041419.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041419.1" } ] } }, { "isoform_ac": "F1SS98-1", "url": "https://www.uniprot.org/uniprotkb/F1SS98/entry#F1SS98-1", "sequence": { "sequence": "MEHHQPEHPASGKAGIAEAVSPENHEVPSEPDEHPQDKDAREADGAAGEQEPEDQASLLAQGHDNLESPPPDASSCQTGPAQGTWPEVETVGACSRPQELPQSPRARQPELDFYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGDCLLSIKPQEKSEGLQLNFQQNVEDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMIKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGRGSPENQRQVDQDYLIALSLQQQQPPPQGTSGLSDLELAQQLQQEEYQQHQAAQPVPAPAPSLQGRGATSGRPAAERRQRPKQESDCVLL", "length": 469, "header": "tr|F1SS98-1|F1SS98_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase OS=Sus scrofa OX=9823 GN=MINDY1 PE=1 SV=1 CANONICAL=F1SS98-1" }, "locus": { "chromosome": "4", "start_pos": 98230902, "end_pos": 98223959, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007278.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007278.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007083.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007083.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABN0", "url": "https://www.uniprot.org/uniprotkb/A0A287ABN0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153890", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153890", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A9M4-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase", "gene_name": "FAM63A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MELQSELGAMLTTTGDDAQCSESSPEPCQLPQDTGGSEEGGDVPSASQRSPELQPAVEEEVPHPSTTEDPAEHQESRSRGAQEELPTPGESDASPGGAPQAAAEPPSARSPTREPEPDFYCVKWITWKGERTPIITQSENGPCPLLAIMNILFLQWKVKLPPQKEVVTSDELMAHLGDCILSIKPHEKSEGLQLNFQQNVNDTMMVLPKLSTGLDVNVRFTGVSDFEYTPECIVFDLLNVPLYHGWLVDPQSPEVVRAVGKLSYNQLVEKIITCKHSGDPNLVTEGPPVLAGDGPGLPAGGARGVGEPSQRGRRQLLLRHAVPPQPCPGQRGGRAGAEPAGPGLHDGPIPAAAAGPGPLSTQRPGAGTAAAAGGVPAAAAAAPPGPPAGPSTAGRPPDTGAETAAQTELGLHPPVADPPGTPPSCRDPLQVLGTMWCEMWGWGGPSLHSAGTLPVFPVALTWG", "length": 463 }, "evidence": [ { "id": "F1SS98", "url": "https://omabrowser.org/oma/group/F1SS98/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7F7Q8-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase", "gene_name": "Mindy1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEQPQAEPPAPSKASSVETVESEKHEALSGPEKNPQDKPRDKGGAEADGAAGEQEPEDQALPPAEDADSGNLECPPPEASSSTCGTSPETETREMSSKPQELPQSPRTQQPDLDLYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEMITSDELMTHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHGWLVDPQFVFAPPHPSPQSPEAVSAVGKLSYNQLVEKIITCKHSSDLNLVTEGLIAEQFLETTAAQLTYHGLCELTATAKEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQDYLIALSLQQQQPQGTLGLSDLELAQQLQQEEYQQQQAVQPGHTRAPSPQGRGTTSGRPAGDRRQRSKPESDCVLL", "length": 480 }, "evidence": [ { "id": "F1SS98", "url": "https://omabrowser.org/oma/group/F1SS98/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1N422-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase", "gene_name": "MINDY1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEHYQPEHPAPGETRTAEAVSPENHKVLSEPKEHPQDKDAKEADGAAGEQEPVDQASLPAQGQDNFESPPPDASSSQPGPARETRPETETAGACSRLQELPQSPRARQPELDFYCVKWIPWKGEQTPIITQSANGPCPLIAIANILFLQWKVKLPPQKEVITSDELMAHLGDCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKGHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSPGKGPGTGGGSGSPEKQRQVDQDYLIALSLQQQQPPPQGTSGLSDLELAQQLQQEEYQQHQAAQAAPARAPSPQGRGAASGRPAAERRQRPKQESDCVLL", "length": 469 }, "evidence": [ { "id": "F1SS98", "url": "https://omabrowser.org/oma/group/F1SS98/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q08930-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase MIY1", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDLSFTTKSVKINGQNHRILLQNENGPCALLALANILILSPDHTRFSNELIRLVNKGSQISLKELIEVLADIALQVTDKPSTDISELLSLLPRLHEGLNINPEFNGSFENTKEMSIFRLFNVDVVHGWVINSFINENIDEKLSHYSYESAQRILTQAADINCGISQDENSDEVLRDAMHLGLFLNESPTQLTAFGLLRLREKLLHNKFSILFRNDHFSTLFKYEDRLYTLVTDFGYKNCKDIVWQSLDSVDGSCDAFFAGNFSAAEVNGQQLSTDIERDFGTGNLLLEEIQQIENDKELAKQLQEQEQERVTKFEAKRKIHSHKKNSEIHAPVKKDKFKRRSSLLNAKASEKEKSECVVM", "length": 360 }, "evidence": [ { "id": "F1SS98", "url": "https://omabrowser.org/oma/group/F1SS98/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5BJQ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase MINDY-1", "gene_name": "Mindy1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEQPQAECPAPSKTNSAETVESEKHEALSGPEKHPQDKDGADAAPEKHPQDKDGADAHGEAGKQKSGDQTLPPVQDGGNLECPPPEASSSPPGPACGIPSEVETTEACSRPQQLPQSPRIQQPDLDFYCVKWIPWKGERTPIITQSSNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLSIKPQEKSEGLQLNFQQNVGDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGVPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIIICKHSSDSNLVTEGLIAEQFLETTAAQLTYHGLCELTATAKEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKSHGAEGGSGSPEKQLQVDQDYLIALSLQQQQQPQGMLGLSDLELAQQLQQEEYQQQQAVQPVRTRAPSSPGRGATSGRPAGERRQRSKTESDCVLL", "length": 482 }, "evidence": [ { "id": "F1SS98", "url": "https://omabrowser.org/oma/group/F1SS98/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q76LS9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase MINDY-1", "gene_name": "Mindy1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEQPQTENPAPSKATSAETVESENHEALSGPEKHPQDKDGADADGAAGEQEPGDQTLPPAQDGENLECPPPEASSSPPGPACGTSPKVETAEVCSRPQELPQSPRIQQPELDFYCVKWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELLTHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSIFDLLGIPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIITCKHSSDSNLVTEGLVAEQFLETTAAQLTYHGLCELTAAATEDELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKSHGAEGGGGSPEKQLQVDQDYLIALSLQQQQQPQGTLGLSDLELAQQLQQEEYQQQQAVQPVRTRAPSPQGRGATSGRPAGERRQRSKTESDCVLL", "length": 468 }, "evidence": [ { "id": "F1SS98", "url": "https://omabrowser.org/oma/group/F1SS98/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N5J2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase MINDY-1", "gene_name": "MINDY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEYHQPEDPAPGKAGTAEAVIPENHEVLAGPDEHPQDTDARDADGEAREREPADQALLPSQCGDNLESPLPEASSAPPGPTLGTLPEVETIRACSMPQELPQSPRTRQPEPDFYCVKWIPWKGEQTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITSDELMAHLGNCLLSIKPQEKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFEYTPECSVFDLLGIPLYHGWLVDPQSPEAVRAVGKLSYNQLVERIITCKHSSDTNLVTEGLIAEQFLETTAAQLTYHGLCELTAAAKEGELSVFFRNNHFSTMTKHKSHLYLLVTDQGFLQEEQVVWESLHNVDGDSCFCDSDFHLSHSLGKGPGAEGGSGSPETQLQVDQDYLIALSLQQQQPRGPLGLTDLELAQQLQQEEYQQQQAAQPVRMRTRVLSLQGRGATSGRPAGERRQRPKHESDCILL", "length": 469 }, "evidence": [ { "id": "F1SS98", "url": "https://omabrowser.org/oma/group/F1SS98/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "K48-linked polyubiquitin modification-dependent protein binding", "id": "GO:0036435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036435", "evidence": [ { "database": "UniProtKB", "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98" } ], "pmid": "" }, { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98" } ], "pmid": "" }, { "name": "K48-linked deubiquitinase activity", "id": "GO:1990380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990380", "evidence": [ { "database": "UniProtKB", "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98" } ], "pmid": "" }, { "name": "histone deubiquitinase activity", "id": "GO:0140934", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140934", "evidence": [ { "database": "UniProtKB", "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98" } ], "pmid": "" }, { "name": "cysteine-type carboxypeptidase activity", "id": "GO:0016807", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016807", "evidence": [ { "database": "UniProtKB", "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SS98", "url": "https://www.uniprot.org/uniprotkb/F1SS98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SS98-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 469, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SS98-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SS98" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS98" }, { "id": "PF04424", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04424" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MINDY deubiquitinase", "eco_id": "ECO_0000259", "start_pos": 113, "end_pos": 364, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUM0-1", "uniprot_ac": "F1SUM0", "uniprot_id": "F1SUM0_PIG", "mass": { "chemical_mass": 38221.0, "monoisotopic_mass": 38221.0 }, "refseq": {}, "gene_names": [ { "name": "MOGAT2", "type": "recommended", "evidence": [ { "id": "F1SUM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUM0" } ] } ], "protein_names": [ { "name": "Acyltransferase", "type": "recommended", "evidence": [ { "id": "F1SUM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUM0/entry#names_and_taxonomy" } ] }, { "name": "2.3.1.-", "type": "synonym", "evidence": [ { "id": "F1SUM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUM0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUM0", "url": "https://www.uniprot.org/uniprotkb/F1SUM0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MOGAT2", "url": "https://www.uniprot.org/uniprotkb/F1SUM0", "locus": {} } ], "crossref": [ { "id": "F1SUM0", "url": "https://alphafold.ebi.ac.uk/entry/F1SUM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014861", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014861", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07987", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07987", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100312975", "url": "https://www.ncbi.nlm.nih.gov/gene/100312975", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "FWFTCAN", "url": "https://omabrowser.org/oma/group/FWFTCAN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QHM2", "url": "https://www.orthodb.org/?gene=A0A5G2QHM2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12317", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12317", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12317:SF74", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12317:SF74", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03982", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03982", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-75109", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75109", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287ABX6", "url": "https://www.uniprot.org/uniprotkb/A0A287ABX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ABX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ABX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHM2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUM0", "url": "https://www.uniprot.org/uniprotkb/F1SUM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUM0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKLAPLSVPWERRLQTLAVLQWVFSFLALAQICTVVFIGLLFTRFWSFSILYATWWYLDRDTPHQGGRRSEAIRCWRVWKYMKDYFPISLVKTAELDPSRNYLAGFHPHGILATGAFTNLCTESTGFSSLFPGIRPHLMMLNLWFRVPFFRDYIMSGGLVASDKESAAHILSRKTGGNLLGIITGGAQEALNARPGSYKLVLRNRKGFVRLALRHGAALVPVFSFGENDAFDQVENLPGSWLRWCQDRLQRIMGISLPLFHGRGVFQHSFGFLPYRRPITTVVGTPIEVQKTPNPSQEEVDGLHQRYLKELSRLFEAHKLKYNVPSDQHLEFC", "length": 334, "header": "tr|F1SUM0-1|F1SUM0_PIG Isoform 1 of Acyltransferase OS=Sus scrofa OX=9823 GN=MOGAT2 PE=1 SV=2 CANONICAL=F1SUM0-1" }, "isoforms": [ { "isoform_ac": "A0A287ABX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUM0/entry#A0A287ABX6-1", "sequence": { "sequence": "MVKLAPLSVPWERRLQTLAVLQWVFSFLALGKAAQICTVVFIGLLFTRFWSFSILYATWWYLDRDTPHQGGRRSEAIRCWRVWKYMKDYFPISLVKTAELDPSRNYLAGFHPHGILATGAFTNLCTESTGFSSLFPGIRPHLMMLNLWFRVPFFRDYIMSGGLVASDKESAAHILSRKTGGNLLGIITGGAQEALNARPGSYKLVLRNRKGFVRLALRHGAALVPVFSFGENDAFDQVENLPGSWLRWCQDRLQRIMGISLPLFHGRGVFQHSFGFLPYRRPITTVVGTPIEVQKTPNPSQEEVDGLHQRYLKELSRLFEAHKLKYNVPSDQHLEFC", "length": 337, "header": "tr|A0A287ABX6-1|F1SUM0_PIG Computationally mapped isoform of Acyltransferase OS=Sus scrofa OX=9823 GN=MOGAT2 PE=1 SV=3 CANONICAL=F1SUM0-1" }, "locus": { "chromosome": "9", "start_pos": 9950874, "end_pos": 9937837, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040527.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040527.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041385.3", "url": "https://www.ensembl.org/id/ENSSSCP00000041385.3" } ] } }, { "isoform_ac": "A0A5G2QHM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUM0/entry#A0A5G2QHM2-1", "sequence": { "sequence": "MYGVWPLKLNRLGSNTSSATYQPCDLGGSIVDCRFWTPHLPGDPPALPHTFTAPALQGSSCVPKLVKTAELDPSRNYLAGFHPHGILATGAFTNLCTESTGFSSLFPGIRPHLMMLNLWFRVPFFRDYIMSGGLVASDKESAAHILSRKTGGNLLGIITGGAQEALNARPGSYKLVLRNRKGFVRLALRHGAALVPVFSFGENDAFDQVENLPGSWLRWCQDRLQRIMGISLPLFHGRGVFQHSFGFLPYRRPITTVVGTPIEVQKTPNPSQEEVDGLHQRYLKELSRLFEAHKLKYNVPSDQHLEFC", "length": 308, "header": "tr|A0A5G2QHM2-1|F1SUM0_PIG Computationally mapped isoform of Acyltransferase OS=Sus scrofa OX=9823 GN=MOGAT2 PE=1 SV=1 CANONICAL=F1SUM0-1" }, "locus": { "chromosome": "9", "start_pos": 9950874, "end_pos": 9943499, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000076012.1", "url": "https://www.ensembl.org/id/ENSSSCT00000076012.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061493.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061493.1" } ] } }, { "isoform_ac": "F1SUM0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUM0/entry#F1SUM0-1", "sequence": { "sequence": "MVKLAPLSVPWERRLQTLAVLQWVFSFLALAQICTVVFIGLLFTRFWSFSILYATWWYLDRDTPHQGGRRSEAIRCWRVWKYMKDYFPISLVKTAELDPSRNYLAGFHPHGILATGAFTNLCTESTGFSSLFPGIRPHLMMLNLWFRVPFFRDYIMSGGLVASDKESAAHILSRKTGGNLLGIITGGAQEALNARPGSYKLVLRNRKGFVRLALRHGAALVPVFSFGENDAFDQVENLPGSWLRWCQDRLQRIMGISLPLFHGRGVFQHSFGFLPYRRPITTVVGTPIEVQKTPNPSQEEVDGLHQRYLKELSRLFEAHKLKYNVPSDQHLEFC", "length": 334, "header": "tr|F1SUM0-1|F1SUM0_PIG Isoform 1 of Acyltransferase OS=Sus scrofa OX=9823 GN=MOGAT2 PE=1 SV=2 CANONICAL=F1SUM0-1" }, "locus": { "chromosome": "9", "start_pos": 9950874, "end_pos": 9937837, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016214.3", "url": "https://www.ensembl.org/id/ENSSSCT00000016214.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015781.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015781.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ABX6", "url": "https://www.uniprot.org/uniprotkb/A0A287ABX6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-75109", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75109", "resource": "Reactome", "description": "Triglyceride biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XC73-1", "protein_name": "Acyltransferase", "gene_name": "MOGAT2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKIEFAPLSLPLQRRLQTAAVVQWVFSFLCLAQCCTAAFIGLLFTRFWLLSVLYAAWWFVDREAPLRGGRRIHMVRNSAVWRHMRDFFPVTLVKTAELDPRQNYLVGFHPHGVLAVGAFINFGTEATGFSTIFPGITPHLMMLSLWFRVPFLRDYLMSGGLVSSDKESAYHVLQRPEGGNLLAIIVGGAQEALDARPGSCTLLLKNRKGFVRVAIEQGTPLVPAFSFGENELFDQVSNPKGSWLRWIQHRLQQIMGISLPLFHARGIFQYSFGLVPYRRPINTVIGKPIPVLKKHKPTEEEVDRVHQKYLEELSKLFEEHKAKYNVPEDSHLEFI", "length": 335 }, "evidence": [ { "id": "F1SUM0", "url": "https://omabrowser.org/oma/group/F1SUM0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3ILJ9-1", "protein_name": "Acyltransferase", "gene_name": "Mogat2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVEFAPLWVPWRRRLQTLAVLQWVFSFLALAQICIAIFIGLLFTRFWLLSVLYATWWYLDWDKPRQGGRPIQFFRRLVIWKYMKDYFPVSLVKTAELDPSRNYIAGFHPHGVLAAGAFVNLCTESTGFTSLFPGIRPYLMMLTLWFRAPFFRDYIMCGGLVTSEKESAGHILTRKGGGNLLAIIIGGSQEALDARPGAYRLLLKNRKGFVRLALIHGAALVPIFSFGENNLFNQVENTSGTWLRCVQNRLQKIMGISLPLFHGRGVFQYSFGLMPFRQPITTVVGKPIEVQMTPQPSEEEVDQLHQLYIKELCKLFEEHKLKFNVPADQHLEFC", "length": 334 }, "evidence": [ { "id": "F1SUM0", "url": "https://omabrowser.org/oma/group/F1SUM0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3SYC2-1", "protein_name": "2-acylglycerol O-acyltransferase 2", "gene_name": "MOGAT2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVEFAPLFMPWERRLQTLAVLQFVFSFLALAEICTVGFIALLFTRFWLLTVLYAAWWYLDRDKPRQGGRHIQAIRCWTIWKYMKDYFPISLVKTAELDPSRNYIAGFHPHGVLAVGAFANLCTESTGFSSIFPGIRPHLMMLTLWFRAPFFRDYIMSAGLVTSEKESAAHILNRKGGGNLLGIIVGGAQEALDARPGSFTLLLRNRKGFVRLALTHGAPLVPIFSFGENDLFDQIPNSSGSWLRYIQNRLQKIMGISLPLFHGRGVFQYSFGLIPYRRPITTVVGKPIEVQKTLHPSEEEVNQLHQRYIKELCNLFEAHKLKFNIPADQHLEFC", "length": 334 }, "evidence": [ { "id": "F1SUM0", "url": "https://omabrowser.org/oma/group/F1SUM0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54GC1-1", "protein_name": "Diacylglycerol O-acyltransferase 2", "gene_name": "dgat2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRFVPWNVPLYRRLETMAVAIYAMVLPVCLIMAFNLIVIPLFWGIAIPYLVWMFYFDTKHESGGRRVSLVRNSILWRYFRDYFPISLIINSNYDPKKNYIFAYHPHGIISIGAFCNFATNANNIDEKLPGLKVHLLTLESNFKIPFLRDVLMSFGMSSVSKKSCENILNSGAGESICLVVGGAEESLDARPGLNEITLKKRKGFIKLALVNGASLVPVYSFGENDIYDQVPNPRGSLVRKIQTKIKDLTGIAPPLFMGRGIFNYDFGLLPVRHKIVTVVGEPIDIPKIKSPTDQVIEHYHQIYVEALQNLFDKHKNSCADKETGNLKIN", "length": 330 }, "evidence": [ { "id": "F1SUM0", "url": "https://omabrowser.org/oma/group/F1SUM0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q80W94-1", "protein_name": "2-acylglycerol O-acyltransferase 2", "gene_name": "Mogat2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVEFAPLLVPWERRLQTFAVLQWVFSFLALAQLCIVIFVGLLFTRFWLFSVLYATWWYLDWDKPRQGGRPIQFFRRLAIWKYMKDYFPVSLVKTAELDPSRNYIAGFHPHGVLAAGAFLNLCTESTGFTSLFPGIRSYLMMLTVWFRAPFFRDYIMSGGLVSSEKVSADHILSRKGGGNLLAIIVGGAQEALDARPGAYRLLLKNRKGFIRLALMHGAALVPIFSFGENNLFNQVENTPGTWLRWIQNRLQKIMGISLPLFHGRGVFQYSFGLMPFRQPITTIVGKPIEVQMTPQPSREEVDRLHQRYIKELCKLFEEHKLKFNVPEDQHLEFC", "length": 334 }, "evidence": [ { "id": "F1SUM0", "url": "https://omabrowser.org/oma/group/F1SUM0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9ASU1-1", "protein_name": "Diacylglycerol O-acyltransferase 2", "gene_name": "DGAT2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGGSREFRAEEHSNQFHSIIAMAIWLGAIHFNVALVLCSLIFLPPSLSLMVLGLLSLFIFIPIDHRSKYGRKLARYICKHACNYFPVSLYVEDYEAFQPNRAYVFGYEPHSVLPIGVVALCDLTGFMPIPNIKVLASSAIFYTPFLRHIWTWLGLTAASRKNFTSLLDSGYSCVLVPGGVQETFHMQHDAENVFLSRRRGFVRIAMEQGSPLVPVFCFGQARVYKWWKPDCDLYLKLSRAIRFTPICFWGVFGSPLPCRQPMHVVVGKPIEVTKTLKPTDEEIAKFHGQYVEALRDLFERHKSRVGYDLELKIL", "length": 314 }, "evidence": [ { "id": "F1SUM0", "url": "https://omabrowser.org/oma/group/F1SUM0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "lipid metabolic process", "id": "GO:0006629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006629", "evidence": [ { "database": "UniProtKB", "id": "F1SUM0", "url": "https://www.uniprot.org/uniprotkb/F1SUM0" } ], "pmid": "" }, { "name": "diacylglycerol biosynthetic process", "id": "GO:0006651", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006651", "evidence": [ { "database": "UniProtKB", "id": "F1SUM0", "url": "https://www.uniprot.org/uniprotkb/F1SUM0" } ], "pmid": "" }, { "name": "triglyceride biosynthetic process", "id": "GO:0019432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019432", "evidence": [ { "database": "UniProtKB", "id": "F1SUM0", "url": "https://www.uniprot.org/uniprotkb/F1SUM0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SUM0", "url": "https://www.uniprot.org/uniprotkb/F1SUM0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "O-acyltransferase activity", "id": "GO:0008374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008374", "evidence": [ { "database": "UniProtKB", "id": "F1SUM0", "url": "https://www.uniprot.org/uniprotkb/F1SUM0" } ], "pmid": "" }, { "name": "diacylglycerol O-acyltransferase activity", "id": "GO:0004144", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004144", "evidence": [ { "database": "UniProtKB", "id": "F1SUM0", "url": "https://www.uniprot.org/uniprotkb/F1SUM0" } ], "pmid": "" }, { "name": "2-acylglycerol O-acyltransferase activity", "id": "GO:0003846", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003846", "evidence": [ { "database": "UniProtKB", "id": "F1SUM0", "url": "https://www.uniprot.org/uniprotkb/F1SUM0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-6800334", "name": "MOGAT1,2,3 transfer acyl group from acyl-CoA to 2-acylglycerol to form DAG", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-6800352" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6800334", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6800334" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-6800352", "participant_name": "2AG [cytosol]", "crossref": [ { "id": "17389", "database": "ChEBI", "url": "" }, { "id": "C02112", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUM0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 334, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUM0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUM0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5E7-1", "uniprot_ac": "F2Z5E7", "uniprot_id": "F2Z5E7_PIG", "mass": { "chemical_mass": 37313.0, "monoisotopic_mass": 37313.0 }, "refseq": {}, "gene_names": [ { "name": "CYRIA", "type": "recommended", "evidence": [ { "id": "F2Z5E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7" } ] } ], "protein_names": [ { "name": "CYFIP related Rac1 interactor A", "type": "synonym", "evidence": [ { "id": "F2Z5E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5E7", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CYRIA", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7", "locus": { "chromosome": "3", "start_pos": 121069240, "end_pos": 120968060, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008617", "url": "https://www.ensembl.org/id/ENSSSCG00000008617" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008617", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008617", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518011", "url": "https://www.ncbi.nlm.nih.gov/gene/100518011", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039789", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039789", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518011", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518011", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MANVCHD", "url": "https://omabrowser.org/oma/group/MANVCHD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5E7", "url": "https://www.orthodb.org/?gene=F2Z5E7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12422", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12422", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07159", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07159", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287ADN2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ADN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ADN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5E7", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5E7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ", "length": 323, "header": "tr|F2Z5E7-1|F2Z5E7_PIG Isoform 1 of CYFIP related Rac1 interactor A OS=Sus scrofa OX=9823 GN=CYRIA PE=1 SV=1 CANONICAL=F2Z5E7-1" }, "isoforms": [ { "isoform_ac": "A0A287ADN2-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7/entry#A0A287ADN2-1", "sequence": { "sequence": "MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDVSTLGKRAPPIRAGERRPADLASLPPSLPSSPTEGGALPADGRPVLSVCLQRSIRPQTQSRKPVEELRGERSLGCKPPLRLPQHERTSLGVSCGSMRKALGDTGL", "length": 384, "header": "tr|A0A287ADN2-1|F2Z5E7_PIG Computationally mapped isoform of CYFIP related Rac1 interactor A OS=Sus scrofa OX=9823 GN=CYRIA PE=1 SV=1 CANONICAL=F2Z5E7-1" }, "locus": { "chromosome": "3", "start_pos": 121061282, "end_pos": 121040917, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104776.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104776.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076354.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076354.1" } ] } }, { "isoform_ac": "F2Z5E7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7/entry#F2Z5E7-1", "sequence": { "sequence": "MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ", "length": 323, "header": "tr|F2Z5E7-1|F2Z5E7_PIG Isoform 1 of CYFIP related Rac1 interactor A OS=Sus scrofa OX=9823 GN=CYRIA PE=1 SV=1 CANONICAL=F2Z5E7-1" }, "locus": { "chromosome": "3", "start_pos": 121066393, "end_pos": 121040917, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009428.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009428.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009186.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009186.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ADN2", "url": "https://www.uniprot.org/uniprotkb/A0A287ADN2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518011", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518011", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M2B7R9-1", "protein_name": "Uncharacterized protein isoform X2", "gene_name": "fam49a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGNLLKVLTCTDFDQGPNFFLDFENAQPTDCEREVWNQVNAVLQESESILSGLQAYKGAGQEIRDAIQNPNDMLLQERAWNSVCPLVIRLKKFYAFSLKLEQALQSLLESLTCPPYTPTQHLEREQALAKQFAEILHFTLRFDELKMRIPAIQNDFSYYRRTISRNRLNNMNLDIENEVNNEMANRMSLFYAEATPMLKTLSTATTNFVTENKTLPLENTTDCLSTMASVCKVMLETPEYTSRFNSEDTLLFCMRVMVGVIILYDHVHPNGAFNKSSKIDMKGCIKVLKDQPADNVEGLLNALKFTTKHLNDESTPKNIRTMLQ", "length": 324 }, "evidence": [ { "id": "F2Z5E7", "url": "https://omabrowser.org/oma/group/F2Z5E7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HFI4-1", "protein_name": "CYFIP-related Rac1 interactor A", "gene_name": "Cyria", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILTDLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ", "length": 323 }, "evidence": [ { "id": "F2Z5E7", "url": "https://omabrowser.org/oma/group/F2Z5E7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q17QT7-1", "protein_name": "CYFIP-related Rac1 interactor A", "gene_name": "CYRIA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ", "length": 323 }, "evidence": [ { "id": "F2Z5E7", "url": "https://omabrowser.org/oma/group/F2Z5E7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BHZ0-1", "protein_name": "CYFIP-related Rac1 interactor A", "gene_name": "Cyria", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILTDLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ", "length": 323 }, "evidence": [ { "id": "F2Z5E7", "url": "https://omabrowser.org/oma/group/F2Z5E7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T2H0-1", "protein_name": "CYFIP-related Rac1 interactor homolog", "gene_name": "cyri", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGQLLSFINGNDHTEQIFIDFEHAQPSDDERELHKTVNEVLIRGPAIIDKLLAYAGCNEFIRRAITNPGPETEDAAWEAVLPSVDQLQEFYDFSLELETCFPKLLVALCKNDPKASLSNQQALAKQLADIFDFVLKFDDAKMVNPAIQNDFSYYRRTLNRMKLTKKDANIKIRDELANRMSLFFAYPTPMMKVLSETTVKFLSQDTTVPRDNVTTALATMANVCHDMVEKKKFTQDDLNMFCLRAMVGSIILFDHIHPQGAFVKKSPVNIKPCIVTLKDSNTQSSPGLLNALRFTTIHLNDVDTPGAIKQLLLLD", "length": 315 }, "evidence": [ { "id": "F2Z5E7", "url": "https://omabrowser.org/oma/group/F2Z5E7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9H0Q0-1", "protein_name": "CYFIP-related Rac1 interactor A", "gene_name": "CYRIA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNLLKVLTREIENYPHFFLDFENAQPTEGEREIWNQISAVLQDSESILADLQAYKGAGPEIRDAIQNPNDIQLQEKAWNAVCPLVVRLKRFYEFSIRLEKALQSLLESLTCPPYTPTQHLEREQALAKEFAEILHFTLRFDELKMRNPAIQNDFSYYRRTISRNRINNMHLDIENEVNNEMANRMSLFYAEATPMLKTLSNATMHFVSENKTLPIENTTDCLSTMTSVCKVMLETPEYRSRFTSEETLMFCMRVMVGVIILYDHVHPVGAFCKTSKIDMKGCIKVLKEQAPDSVEGLLNALRFTTKHLNDESTSKQIRAMLQ", "length": 323 }, "evidence": [ { "id": "F2Z5E7", "url": "https://omabrowser.org/oma/group/F2Z5E7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F2Z5E7", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F2Z5E7", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of actin filament polymerization", "id": "GO:0030833", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030833", "evidence": [ { "database": "UniProtKB", "id": "F2Z5E7", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 202, "end_pos": 204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5E7" }, { "id": "PF07159", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07159" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CYRIA/CYRIB Rac1 binding", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 319, "start_aa": "Phe", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 202, "end_pos": 204 }, { "start_pos": 211, "end_pos": 213 }, { "start_pos": 218, "end_pos": 220 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST78-1", "uniprot_ac": "F1ST78", "uniprot_id": "F1ST78_PIG", "mass": { "chemical_mass": 166956.0, "monoisotopic_mass": 166956.0 }, "refseq": { "ac": "XP_020935011", "name": "tensin-3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935011" }, "gene_names": [ { "name": "TNS3", "type": "recommended", "evidence": [ { "id": "F1ST78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST78" } ] }, { "name": "TNS3", "type": "synonym", "evidence": [ { "id": "XP_020935011", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935011" } ] } ], "protein_names": [ { "name": "Tensin 3", "type": "synonym", "evidence": [ { "id": "F1ST78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST78/entry#names_and_taxonomy" } ] }, { "name": "tensin-3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020935011", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935011" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST78", "url": "https://www.uniprot.org/uniprotkb/F1ST78" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TNS3", "url": "https://www.uniprot.org/uniprotkb/F1ST78", "locus": { "chromosome": "18", "start_pos": 49192433, "end_pos": 48997217, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016725", "url": "https://www.ensembl.org/id/ENSSSCG00000016725" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016725", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016725", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01213", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09927", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09927", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14561", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14561", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20889", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20889", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524966", "url": "https://www.ncbi.nlm.nih.gov/gene/100524966", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033929", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033929", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051484", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051484", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "QGSEHLH", "url": "https://omabrowser.org/oma/group/QGSEHLH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1ST78", "url": "https://www.orthodb.org/?gene=F1ST78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45734", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45734", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45734:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45734:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08416", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08416", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10409", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10409", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8875513", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8875513", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020935011", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935011", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287ANH5", "url": "https://www.uniprot.org/uniprotkb/A0A287ANH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7H7", "url": "https://www.uniprot.org/uniprotkb/A0A287B7H7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7H7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B7H7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQG7", "url": "https://www.uniprot.org/uniprotkb/A0A287BQG7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQG7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQG7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST78", "url": "https://www.uniprot.org/uniprotkb/F1ST78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST78-1", "url": "https://www.uniprot.org/uniprotkb/F1ST78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLRALTPGPPGGCARGARARRHRRQPEELTTSLHSFKNKTFKKARVCGVCKQIIDGRGLSCRACKYACHQPCEAAVVSPRCAKAHLEQAPEVSSPPASPCRDRPSRPPAPRPAMEDGRELDLTYITERIIAVSFPAGCAEESYLHSLQEVTRMLRSKHGDNYLVLNLSEKRYDLTKLNPKTLDVGWPELHAPPLDKVCTICKAQEAWLNSDPQHVVVIHCRGGKGRMGVVVSSYMHFTNVSASADQALDRFAMKKFYDDKLSALMQPSQKRYVQFLSGLLSGTVKMNASPLFLHFVILHGTPNFDSGGACRPFLKLYQAMQPVYTSGIYNVGPEHQSRIHIAVEPAQLLKGDIMVKCYHKKYRSATRDVIFRLQFHTGAVQGYRLLFGKEDLDNASKDDRFPDNGKIELIFSATPEKIQGCEHLQNDHGVIVDFNTADPLIRWDSYENLSADGGVLHTQGPVDGSLYAKVRKKSASDPSAPAGSPAVPAAGSPDHSDHTLSVSSDSGHSTASVRTDRTEEHLVPGPKRGLSPQEKAELDQLLSGFGLEDSGSPVKDMTDARSKYSGTRHVVPAQVHVNGDATPKDRETDILDDETPGHDLHSVDSIGTLSSSEGHPSAHLGPFTCHQSSQNSLLSDGFGSTAGEDQHGTLAPDLGLGVDPSYERERAFGSCEPKQPQPVLRKPSVPAPTPAYGQGSYPTQTWVRQQQMVAAHQYSFAPDGEARLGARGPADSSSLAQIQPRVPITPTRGASSRVAVQRGIGPGPHPPDTQRPPPGKAAFKPRISDVRVMNGTGLELSADPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMTMPGSQANSPAPPDGVGGGLRASGRLQDAGDGPGRAPTRQGDEPLGGRFRKLSLGQYDNDAGGQPAFSKCGWGKPTGGEQPPSLAPFLSPANAKETVVTAYPPDLDAVDGRIFSPTSSGSESVSPTPAFPVSPETPYVTTSPRYPPFSPSGPQMGSASSLYKGAHEPRGCPEVLGHSAGMSESPAGPKPAMLRADMPTAPSFQRAFTSSCTISGNSSGQRRESPSSAEHQWVESSPKSTLALLGGSRPAGSLLGASEFSGPGKDGPGRPPFPPAELQTSFHGHELSLVEPPEALGPPSSQAFLSFSTAPSGGGLAPREDSGALLANSHGASPAPGPPRTAAEATDNGFLSHNFLTVAPGHSGHHSPVLQGPGMTLPGQPPLPEKKRASEGDRSFGSVSPSSSGFSSPHSGSTMSIPFPNVLPDFSKAAEAAAPSPDHSGDKHVSVNFVQDTSKFWYKADISREQAIAMLKDKEPGSFIVRDSHSFRGAYGLAMKVATPPPSVLQLNKKAGDLANELVRHFLIECTPKGVRLKGCSNEPYFGSLTALVCQHSITPLALPCKLLIPDRDPLEEIAESSPQTAANSAAELLKQGAACNVWYLNSVEMESLTGPQAVQKALSITLVQEPPPLCTVVHFKVSAQGITLTDNQRKLFFRRHYPVSSVIFCALDPQDRKWITDGPCSRVFGFVARKQGSATDNVCHLFAEHDPEQPASAIVNFVSKVMIGSPKKI", "length": 1563, "header": "tr|F1ST78-1|F1ST78_PIG Isoform 1 of Tensin 3 OS=Sus scrofa OX=9823 GN=TNS3 PE=1 SV=4 CANONICAL=F1ST78-1" }, "isoforms": [ { "isoform_ac": "A0A287ANH5-1", "url": "https://www.uniprot.org/uniprotkb/F1ST78/entry#A0A287ANH5-1", "sequence": { "sequence": "MRLRALTPGPPGGCARGARARRHRRQPEELTTSLHSFKNKTFKKARVCGVCKQIIDGRGLSCRACKYACHQPCEAAAPEVSSPPASPCRDRPSRPPAPRPAMEDGRELDLTYITERIIAVSFPAGCAEESYLHSLQEVTRMLRSKHGDNYLVLNLSEKRYDLTKLNPKTLDVGWPELHAPPLDKVCTICKAQEAWLNSDPQHVVVIHCRGGKGRMGVVVSSYMHFTNVSASADQALDRFAMKKFYDDKLSALMQPSQKRYVQFLSGLLSGTVKMNASPLFLHFVILHGTPNFDSGGACRPFLKLYQAMQPVYTSGIYNVGPEHQSRIHIAVEPAQLLKGDIMVKCYHKKYRSATRDVIFRLQFHTGAVQGYRLLFGKEDLDNASKDDRFPDNGKIELIFSATPEKIQGCEHLQNDHGVIVDFNTADPLIRWDSYENLSADGGVLHTQGPVDGSLYAKVRKKSASDPSAPAGSPAVPAAGSPDHSDHTLSVSSDSGHSTASVRTDRTEEHLVPGPKRGLSPQEKAELDQLLSGFGLEDSGSPVKDMTDARSKYSGTRHVVPAQVHVNGDATPKDRETDILDDETPGHDLHSVDSIGTLSSSEGHPSAHLGPFTCHQSSQNSLLSDGFGSTAGEDQHGTLAPDLGLGVDPSYERERAFGSCEPKQPQPVLRKPSVPAPTPAYGQGSYPTQTWVRQQQMVAAHQYSFAPDGEARLGARGPADSSSLAQIQPRVPITPTRGASSRVAVQRGIGPGPHPPDTQRPPPGKAAFKPRISDVRVMNGTGLELSADPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMTMPGSQANSPAPPDGVGGGLRASGRLQDAGDGPGRAPTRQGDEPLGGRFRKLSLGQYDNDAGGQPAFSKCGWGKPTGGEQPPSLAPFLSPANAKETVVTAYPPDLDAVDGRIFSPTSSGSESVSPTPAFPVSPETPYVTTSPRYPPFSPSGPQMGSASSLYKGAHEPRGCPEVLGHSAGMSESPAGPKPAMLRADMPTAPSFQRAFTSSCTISGNSSGQRRESPSSAEHQWVESSPKSTLALLGGSRPAGSLLGASEFSGPGKDGPGRPPFPPAELQTSFHGHELSLVEPPEALGPPSSQAFLSFSTAPSGGGLAPREDSGALLANSHGASPAPGPPRTAAEATDNGFLSHNFLTVAPGHSGHHSPVLQGPGMTLPGQPPLPEKKRASEGDRSFGSVSPSSSGFSSPHSGSTMSIPFPNVLPDFSKAAEAAAPSPDHSGDKHVSVNFVQDTSKFWYKADISREQAIAMLKDKEPGSFIVRDSHSFRGAYGLAMKVATPPPSVLQLNKKAGDLANELVRHFLIECTPKGVRLKGCSNEPYFGSLTALVCQHSITPLALPCKLLIPDRDPLEEIAESSPQTAANSAAELLKQGAACNVWYLNSVEMESLTGPQAVQKALSITLVQEPPPLCTVVHFKVSAQGITLTDNQRKLFFRRHYPVSSVIFCALDPQDRKWITDGPCSRVFGFVARKQGSATDNVCHLFAEHDPEQPASAIVNFVSKVMIGSPKKI", "length": 1550, "header": "tr|A0A287ANH5-1|F1ST78_PIG Computationally mapped isoform of Tensin 3 OS=Sus scrofa OX=9823 GN=TNS3 PE=1 SV=1 CANONICAL=F1ST78-1" }, "locus": { "chromosome": "18", "start_pos": 49189998, "end_pos": 48997467, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060317.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060317.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045439.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045439.2" } ] } }, { "isoform_ac": "A0A287B7H7-1", "url": "https://www.uniprot.org/uniprotkb/F1ST78/entry#A0A287B7H7-1", "sequence": { "sequence": "AARRHGGLPEELTTSLHSFKNKTFKKARVCGVCKQIIDGRGLSCRGESFFFFFFFFKLLHEFYYICSCAMMEAPEVSSPPASPCRDRPSRPPAPRPAMEDGRELDLTYITERIIAVSFPAGCAEESYLHSLQEVTRMLRSKHGDNYLVLNLSEKRYDLTKLNPKTLDVGWPELHAPPLDKVCTICKAQEAWLNSDPQHVVVIHCRGGKGRMGVVVSSYMHFTNVSASADQALDRFAMKKFYDDKLSALMQPSQKRYVQFLSGLLSGTVKMNASPLFLHFVILHGTPNFDSGGACRPFLKLYQAMQPVYTSGIYNVGPEHQSRIHIAVEPAQLLKGDIMVKCYHKKYRSATRDVIFRLQFHTGAVQGYRLLFGKEDLDNASKDDRFPDNGKIELIFSATPEKIQGCEHLQNDHGVIVDFNTADPLIRWDSYENLSADGGVLHTQGPVDGSLYAKVRKKSASDPSAPAGSPAVPAAGSPDHSDHTLSVSSDSGHSTASVRTDRTEEHLVPGPKRGLSPQEKAELDQLLSGFGLEDSGSPVKDMTDARSKYSGTRHVVPAQVHVNGDATPKDRETDILDDETPGHDLHSVDSIGTLSSSEGHPSAHLGPFTCHQSSQNSLLSDGFGSTAGEDQHGTLAPDLGLGVDPSYERERAFGSCEPKQPQPVLRKPSVPAPTPAYGQGSYPTQTWVRQQQMVAAHQYSFAPDGEARLGARGPADSSSLAQIQPRVPITPTRGASSRVAVQRGIGPGPHPPDTQRPPPGKAAFKPRISDVRVMNGTGLELSADPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMTMPGSQANSPAPPDGVGGGLRASGRLQDAGDGPGRAPTRQGDEPLGGRFRKLSLGQYDNDAGGQPAFSKCGWGKPTGGEQPPSLAPFLSPANAKETVVTAYPPDLDAVDGRIFSPTSSGSESVSPTPAFPVSPETPYVTTSPRYPPFSPSGPQMGSASSLYKGAHEPRGCPEVLGHSAGMSESPAGPKPAMLRADMPTAPSFQRAFTSSCTISGNSSGQRRESPSSAEHQWVESSPKSTLALLGGSRPAGSLLGASEFSGPGKDGPGRPPFPPAELQTSFHGHELSLVEPPEALGPPSSQAFLSFSTAPSGGGLAPREDSGALLANSHGASPAPGPPRTAAEATDNGFLSHNFLTVAPGHSGHHSPVLQGPGMTLPGQPPLPEKKRASEGDRSFGSVSPSSSGFSSPHSGSTMSIPFPNVLPDFSKAAEAAAPSPDHSGDKHVSVNFVQDTSKFWYKADISREQAIAMLKDKEPGSFIVRDSHSFRGAYGLAMKVATPPPSVLQLNKKAGDLANELVRHFLIECTPKGVRLKGCSNEPYFGSLTALVCQHSITPLALPCKLLIPDRDPLEEIAESSPQTAANSAAELLKQGAACNVWYLNSVEMESLTGPQAVQKALSITLVQEPPPLCTVVHFKVSAQGITLTDNQRKLFFRRHYPVSSVIFCALDPQDRKWITDGPCSRVFGFVARKQGSATDNVCHLFAEHDPEQPASAIVNFVSKVMIGSPKKI", "length": 1546, "header": "tr|A0A287B7H7-1|F1ST78_PIG Computationally mapped isoform of Tensin 3 OS=Sus scrofa OX=9823 GN=TNS3 PE=1 SV=2 CANONICAL=F1ST78-1" }, "locus": { "chromosome": "18", "start_pos": 49189998, "end_pos": 49006556, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054749.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054749.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052424.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052424.2" } ] } }, { "isoform_ac": "A0A287BQG7-1", "url": "https://www.uniprot.org/uniprotkb/F1ST78/entry#A0A287BQG7-1", "sequence": { "sequence": "MEDGRELDLTYITERIIAVSFPAGCAEESYLHSLQEVTRMLRSKHGDNYLVLNLSEKRYDLTKLNPKTLDVGWPELHAPPLDKVCTICKAQEAWLNSDPQHVVVIHCRGGKGRMGVVVSSYMHFTNVSASADQALDRFAMKKFYDDKLSALMQPSQKRYVQFLSGLLSGTVKMNASPLFLHFVILHGTPNFDSGGACRPFLKLYQAMQPVYTSGIYNVGPEHQSRIHIAVEPAQLLKGDIMVKCYHKKYRSATRDVIFRLQFHTGAVQGYRLLFGKEDLDNASKDDRFPDNGKIELIFSATPEKIQGCEHLQNDHGVIVDFNTADPLIRWDSYENLSADGGVLHTQGPVDGSLYAKVRKKSASDPSAPAGSPAVPAAGSPDHSDHTLSVSSDSGHSTASVRTDRTEEHLVPGPKRGLSPQEKAELDQLLSGFGLEDSGSPVKDMTDARSKYSGTRHVVPAQVHVNGDATPKDRETDILDDETPGHDLHSVDSIGTLSSSEGHPSAHLGPFTCHQSSQNSLLSDGFGSTAGEDQHGTLAPDLGLGVDPSYERERAFGSCEPKQPQPVLRKPSVPAPTPAYGQGSYPTQTWVRQQQMVAAHQYSFAPDGEARLGARGPADSSSLAQIQPRVPITPTRGASSRVAVQRGIGPGPHPPDTQRPPPGKAAFKPRISDVRVMNGTGLELSADPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMTMPGSQANSPAPPDGVGGGLRASGRLQDAGDGPGRAPTRQGDEPLGGRFRKLSLGQYDNDAGGQPAFSKCGWGKPTGGEQPPSLAPFLSPANAKETVVTAYPPDLDAVDGRIFSPTSSGSESVSPTPAFPVSPETPYVTTSPRYPPFSPSGPQMGSASSLYKGAHEPRGCPEVLGHSAGMSESPAGPKPAMLRADMPTAPSFQRAFTSSCTISGNSSGQRRESPSSAEHQWVESSPKSTLALLGGSRPAGSLLGASEFSGPGKDGPGRPPFPPAELQTSFHGHELSLVEPPEALGPPSSQAFLSFSTAPSGGGLAPREDSGALLANSHGASPAPGPPRTAAEATDNGFLSHNFLTVAPGHSGHHSPVLQGPGMTLPGQPPLPEKKRASEGDRSFGSVSPSSSGFSSPHSGSTMSIPFPNVLPDFSKAAEAAAPSPDHSGDKHVSVNFVQDTSKFWYKADISREQAIAMLKDKEPGSFIVRDSHSFRGAYGLAMKVATPPPSVLQLNKKGSLTALVCQHSITPLALPCKLLIPDRDPLEEIAESSPQTAANSAAELLKQGAACNVWYLNSVEMESLTGPQAVQKALSITLVQEPPPLCTVVHFKVSAQGITLTDNQRKLFFRRHYPVSSVIFCALDPQDRKWITDGPCSRVFGFVARKQGSATDNVCHLFAEHDPEQPASAIVNFVSKVMIGSPKKI", "length": 1417, "header": "tr|A0A287BQG7-1|F1ST78_PIG Computationally mapped isoform of Tensin 3 OS=Sus scrofa OX=9823 GN=TNS3 PE=1 SV=1 CANONICAL=F1ST78-1" }, "locus": { "chromosome": "18", "start_pos": 49189998, "end_pos": 49069558, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037333.1", "url": "https://www.ensembl.org/id/ENSSSCT00000037333.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058416.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058416.1" } ] } }, { "isoform_ac": "F1ST78-1", "url": "https://www.uniprot.org/uniprotkb/F1ST78/entry#F1ST78-1", "sequence": { "sequence": "MRLRALTPGPPGGCARGARARRHRRQPEELTTSLHSFKNKTFKKARVCGVCKQIIDGRGLSCRACKYACHQPCEAAVVSPRCAKAHLEQAPEVSSPPASPCRDRPSRPPAPRPAMEDGRELDLTYITERIIAVSFPAGCAEESYLHSLQEVTRMLRSKHGDNYLVLNLSEKRYDLTKLNPKTLDVGWPELHAPPLDKVCTICKAQEAWLNSDPQHVVVIHCRGGKGRMGVVVSSYMHFTNVSASADQALDRFAMKKFYDDKLSALMQPSQKRYVQFLSGLLSGTVKMNASPLFLHFVILHGTPNFDSGGACRPFLKLYQAMQPVYTSGIYNVGPEHQSRIHIAVEPAQLLKGDIMVKCYHKKYRSATRDVIFRLQFHTGAVQGYRLLFGKEDLDNASKDDRFPDNGKIELIFSATPEKIQGCEHLQNDHGVIVDFNTADPLIRWDSYENLSADGGVLHTQGPVDGSLYAKVRKKSASDPSAPAGSPAVPAAGSPDHSDHTLSVSSDSGHSTASVRTDRTEEHLVPGPKRGLSPQEKAELDQLLSGFGLEDSGSPVKDMTDARSKYSGTRHVVPAQVHVNGDATPKDRETDILDDETPGHDLHSVDSIGTLSSSEGHPSAHLGPFTCHQSSQNSLLSDGFGSTAGEDQHGTLAPDLGLGVDPSYERERAFGSCEPKQPQPVLRKPSVPAPTPAYGQGSYPTQTWVRQQQMVAAHQYSFAPDGEARLGARGPADSSSLAQIQPRVPITPTRGASSRVAVQRGIGPGPHPPDTQRPPPGKAAFKPRISDVRVMNGTGLELSADPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMTMPGSQANSPAPPDGVGGGLRASGRLQDAGDGPGRAPTRQGDEPLGGRFRKLSLGQYDNDAGGQPAFSKCGWGKPTGGEQPPSLAPFLSPANAKETVVTAYPPDLDAVDGRIFSPTSSGSESVSPTPAFPVSPETPYVTTSPRYPPFSPSGPQMGSASSLYKGAHEPRGCPEVLGHSAGMSESPAGPKPAMLRADMPTAPSFQRAFTSSCTISGNSSGQRRESPSSAEHQWVESSPKSTLALLGGSRPAGSLLGASEFSGPGKDGPGRPPFPPAELQTSFHGHELSLVEPPEALGPPSSQAFLSFSTAPSGGGLAPREDSGALLANSHGASPAPGPPRTAAEATDNGFLSHNFLTVAPGHSGHHSPVLQGPGMTLPGQPPLPEKKRASEGDRSFGSVSPSSSGFSSPHSGSTMSIPFPNVLPDFSKAAEAAAPSPDHSGDKHVSVNFVQDTSKFWYKADISREQAIAMLKDKEPGSFIVRDSHSFRGAYGLAMKVATPPPSVLQLNKKAGDLANELVRHFLIECTPKGVRLKGCSNEPYFGSLTALVCQHSITPLALPCKLLIPDRDPLEEIAESSPQTAANSAAELLKQGAACNVWYLNSVEMESLTGPQAVQKALSITLVQEPPPLCTVVHFKVSAQGITLTDNQRKLFFRRHYPVSSVIFCALDPQDRKWITDGPCSRVFGFVARKQGSATDNVCHLFAEHDPEQPASAIVNFVSKVMIGSPKKI", "length": 1563, "header": "tr|F1ST78-1|F1ST78_PIG Isoform 1 of Tensin 3 OS=Sus scrofa OX=9823 GN=TNS3 PE=1 SV=4 CANONICAL=F1ST78-1" }, "locus": { "chromosome": "18", "start_pos": 49189998, "end_pos": 48997467, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018206.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018206.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017715.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017715.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 690, "start_aa": "Thr", "end_pos": 690, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr690", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 748, "start_aa": "Thr", "end_pos": 748, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr748", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 961, "start_aa": "Thr", "end_pos": 961, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr961", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287ANH5", "url": "https://www.uniprot.org/uniprotkb/A0A287ANH5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8875513", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8875513", "resource": "Reactome", "description": "MET interacts with TNS proteins" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MGZ2-1", "protein_name": "Tensin 3", "gene_name": "TNS3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSPQGQAGPLAGASAFCTHSSRTTTTTGLRRWLREQKGSIDSAPLVIHHLSQRFPECSPLTTGDFGRTSKGSRGRTSETPRHRSPGGIPAGHHHPGEVRACLGLPRPARPSAVARTAMRLRALTPGPPGGCARGARALRHRRQPEEVTASLHSFKNKAFKKARVCGVCKQIIEGRGISCRACKYSCHKKCEAKVVSPHCVQVHLEQAPGASSTPASLCCDKPFRPAGLSPAMEDGRELDLTYITERIIAVSFPAGCSEESYLHNLQEVTRMLRSKHGDNYLVLNLSEKRYDLTKLNPKILDVGWPELHAPPLDKVCTICKAQEAWLNSDPQHVVVIHCRGGKGRIGVVISSYMHFTNVSASADQALDRFAMKKFYDDKLAALMQPSQKRYVQFLSGLLSGTVKMNASPLFLHFVILHGTPNFDSGGVCRPFLKLYQAMQPVYTSGIYNVGPENQSRIYIAIEPAQLLKGDIMVKCYHKKYRSATRDVIFRLQFHTGAVQGYRLVFAKEDLDNASKDDRFPDNGKIELVFSATPEKIQGCEHLQNDHRVIVDFNTADPLIRWDSYENLSADGEVLHTQGPVDGSLYAKVRKKSTSDPSVPGGSPAVPAASSPDHSDHTLSVSSDSGHSTASVRTDRTEEHLTPGSKRGLSPQEKAELDQLLSGFGLEDSGSPLKDMSDARSKYSGTRHVVPAQVHVNGDTTPKDRETDILDDEMPSHDLHSVDSIGTLSSSEGHPSAHLSPFTCHQSSQNSLLSDGFGSTAGEDQHGALAPDLGLAAEPLFERERAFGSCEPKQPQPVLRKPSVPAQTQAYGPSSYSTQTWVRQQQMVAAHQYSFAPDGEARLSGRGAADSSGLLQTQPRVPLTPTRGASSRVAVQRGIGPGPHPPDIQRPPPGKAAFKPRIPDVKVVNGAGPELGTDLSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMNMSSSQANGPMPPDGMAGGLWASGRLQDTGDGPGRAPVRQGDEPLGGRFQKLSLEQYDNEAGEQPTFSKCSWGKTTSSEQTPGLAPFLSPDNTKEAVITTYPPDLDVIDGRIFSPTNSGSESISPTPAFPVSPETPYGTTSPRYSPFSPSVPQMGSPSALYKGAHEPRGCPEILSHSVGMSESPVGPKPTMLRADMPTAPSFQRAFTSSCTISGNSPSQRRGSPSSAEHQWVETSPKSTLTLLGGSRPGKDSPARPHFPPADLQTSFHGPELSLAEPPEALGPPSNQAFLSFSTAPMAGGGLPAGEDPGALLANSHGAAQAPGNPLTAAEAADNSFLSHSFLTVAPGHSGHHSPVLQGPGLALPGQPPLPEKKRTSEGDRSFGSVSPSSSGFSSPHSGSTMSIPFPNIIPDFSKAAEGAAPSPDNPGDKHVSVNFVQDTSKFWYKADISREQAIAMLKDKEPGSFIVRDSHSFRGAYGLAMKVATPPPSVLQMNKKAGDLANELVRHFLIECTPKGVRLKGCSNEPYFGSLTALVCQHSITPLALPCKLLIPDRDPLEEIAENPQQTAANSAAELLKQGAACNVWYLNSVEMESLTGHQAIQKALSMTLVQEPPPLSTVVHFKVSAQGITLTDNQRKLFFRRHYPVSSVIFCALDPQDRKWVTDGPCSRVFGFVARKQGSATDNVCHLFAEHDPEQPASAIVNFVSKVMIGSPKKI", "length": 1668 }, "evidence": [ { "id": "F1ST78", "url": "https://omabrowser.org/oma/group/F1ST78/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8I6A502-1", "protein_name": "Tensin 3", "gene_name": "Tns3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRPGDPQGSGARAVRGDCPSRLEGALPRARAASQEDGPAREQLGAQLRFGHRPAGLRCGFAQPEEFTTCPHSFKKKDFKKHRVCGVCRQTIDGQGIACRTCKYSCHKKCEAQVVTTCSAQVHLDQAPEGSTPSAPLRCDKPSRPVVLSSAMEDSHELDLTYVTERIIAVSFPASCSEESYLHSLQEVTRMLKSKHGDNYLVLNLSEKRYDLTKLNPKIMDVGWPELHAPPLDKMCTICKAQESWLNSDPQHVVVIHCRGGKGRIGVVISSYMHFTNVSASADQALDRFAMKKFYDDKVSALMEPSQKRYVQFLSGLLSGAVKMNASPLFLHFVILHGAPSFDTGGACRPFLKLYQAMQPVYTSGIYNVGSENPSRIRIAIEPAQLLKGDIMVKCYHKKFRSATRDVIFRLQFHTGAVQGYGLLFGKEELDSACKDDRFPDYGKIELVFSATPEKIQGSEHLYSDQGVTVDYNTADPLIRWDSYENMSADGEVLHTQGPVDGSLYAKVRKKSASDSGIPSSPQGMPATSSPDHGDHTLSVSSDSGHSTASARTDKTEERQTPGARRGLSPQEKAELDQLLSGFGLEDSANSHKDMTDMRSKYSGTRHVVPAQVHVNGDAALKDRETDILDDEMPHHDLHSVDSLGTLSSSEGPQSTHLGPFACLKSSQNSLLSDGFGNGVAEDHNGVLSPDLGLGVDSVYERERMCGGREQKQLQPLSRKPSAPTPTQAYGQSNYSTQTWVRQQQMVTAHQYSFASDGEARHGSRSAVDSAGLAQPSPHIPVTPTHGTSSRVAVQRGISNGPNPPDAQQLCPSKALQPRFPDDRVMNGVVHQELNPGPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHLSALGLSANGSMYPDGVGSGLRCGGRLDPVDGPGRSPGRQGDDPVGGRLRKLSIGQYDNDAGSQVTFSKCGWGKAGADSAPSLGSFSSPADIKETVITAYPPDLDVIDGRIPNSKESPICLTPAFPVSPETPYVKTSPRYPPFSPPEPQLSIPASLHKGREPRGCTEIISHTVGMSESPLGSKPTLLRADMPATPNFQQVFAASCTVSSNGPGQRRESPPSAERQWAESSPKSTLTLLGNNRPSESPLGTHEFCSSGKNSPGLPCFQSSELQASFHSHELSMSESQDAMPPAGSQTFLGFNTVTTVTSGLPPSEDAGTLLVNSHGPSPVPGTPLTTTGAADNGFLSHNFLTVSPGASSHHSPGLQNQGISLPGQPPLPEKKRTSEGDRSLGSVSPSSSGFSSPHSGSTMSIPFPNVLPDFCKPSEVATPLPDSPNDKLVIVKFVQDTSKFWYKADISREQAIAMLKDKAPGSFIVRDSHSFRGAYGLAMKVATPPPSVLHLNKKAGDLSNELVRHFLIECTPKGVRLKGCSNEPYFGSLTALVCQHSITPLALPCKLLIPERDPLEEIAENSPQTAANSAAELLKQGAACNVWYLNSVEMESLTGHQAVQKALNMTLVQEPPPVSTVVHFKVSAQGITLTDNQRKLFFRRHYPVSSVIFCALDPQDRKWIKDGPSSKVFGFVARKQGSATDNVCHLFAEHDPEQPASAIVNFVSKVMIGSPKKI", "length": 1595 }, "evidence": [ { "id": "F1ST78", "url": "https://omabrowser.org/oma/group/F1ST78/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0Y2S7-1", "protein_name": "Tensin 3", "gene_name": "TNS3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGGRMSLMLHGREPRPLPHRRSAQEGVEMMIKPRETALKSHTFKNKSFKKSKICGFCKQVIDSQGISCRVCKYACHRKCEEKVVTPCFLLSNYKLANNLEAFENHVTRTNSSSVLKNTFSCDKGSQKCRSADFDHIMEEGYELDLTYITERIIAVSFPADCSEETYLHNLQDVTRMLKSKHGNNYLVLNLSEKRYDLTKLNPKIMDVGWPDLHAPPLDKMCTICKAMESWLNSDLQRVVVIHCKGGRGRIGVVISSYMHFTSVSTSADQALDRFAMKKFFDDKVSALMQPSQKRYVQFLSGLLSGSVKMNTASLFLHHVILHGIPSFDAGGACRPFLKLYQATQPVYTSGIYSVESENQNRICIAIEPAQLLKGDVMLKCYHKKYRSATRDVIFRLQFHTGAIQGYGLVFGKEDLDSANKDERFPDNGKVELVFSGTPEKVQGCEHLQNDHGVVVDHNTSDPLIRWDSYENMSSDGEVLHTQGPIDGSLYAKVRKKSSSDGSIPGVAQGIPVTSSPDHRDHTLSVSSDSGHSTASVRTDKTEERLIPGVKRVLSPQEKAELDKLLSGFGLEDSIITTRSVTDTGSKYSGTHHTVPAQVHVNGDTKLKDRETDILDDEMPNHDLHSVDSIGTLSSSEGQHSTHLGNLSCPKSSQNSLLSDGFGSNTGEDHHCAIAPDLGIGVDPLYERSFGNTEPQSSQQLQRNPCVSPHPQAYDPSNYSTHTWVCQQQMVTAHQYGFVPQNEMRVGIHKTVENLGIVQSQSHIPDMLTHGSSSKDAIQRGLESIPGVAEGAEPADSESFKSELVPQRDTNSQDLGPNAGDLPASPTLDIDQSIEQLNRLILELDPTFEPIPTRINIVTRDTNQANGFTSHNTDVEELVMSPGIHEKLEVTNRNAFQNGSKDNDAVVGRNRKLSVGQYDNDFPGQSLYSGCGWMKSVVADQAVNPGSLIPVGETKEMSVACYQDEIYGGIFSLPRNGNEDVPSTPAFSLPPETPYVKTPPLYHQRISSSQKVSSPSGLYKTSPESQSYTEALNHPTVVSDNTIDTNPALLRPNTQVDPSFQRCLVSPCTASSNSSVPVGESSLVTEHSWIQNSPKSSKLFQLSTGSNRPTGSYHVPSEFSNPVQDGSLLSHFQTPGLHVVTLSNLEKSPAEQQQELAVSSSAQAYRSYNGANVGISSPQEEKQDTFIANTSKSPKTMSSSVESAEDDGFLAQNFLAMTSGHISQNNAVHPCLGGNLHSQPPLPEKKRSSEGDRSFVSISPSSSGFSSPHSGSTISIPFPSVLPDFSNTGKTSLLPENTAEKQVTVKFVQDTSKFWYKPDISREQAIAVLKDKEPGSFVVRDSHSFRGAYGLAIKVAVPPPSVLQMNKKVGDLSNELVRHFLIECSQKGVHLKGCPNEPCFGSLTALVYQHSITPLALPCKLLIPNRDPLEEMAETSPQTAANSATELLKQGAACNVWYLNSVEMESLTGYQAVQKALSLTLMQDPSPISTIVHFKVSAQGITLTDNQRKLFFRRHYPVNTVIFCALDPQDRKWMKDGLSAKVFGFVARKQGSGTDNVCHLFAEHDPEQPASAIVNFVSKVMIGSQKKI", "length": 1587 }, "evidence": [ { "id": "F1ST78", "url": "https://omabrowser.org/oma/group/F1ST78/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5SSZ5-1", "protein_name": "Tensin-3", "gene_name": "Tns3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSHELDLTYVTERIIAVSFPASCSEESYLHSLQEVTRMLKCKHGDNYLVLNLSEKRYDLTKLNPKIMDVGWPELHAPPLDKMCTICKAQESWLNNDPQHVVVIHCRGGKGRIGVVISSYMHFTNVSASADQALDRFAMKKFYDDKISALMEPSQKRYVQFLSGLLSGAMKMNTSPLFLHFVIMHGVPSFDTGGACRPFLKLYQAMQPVYTSGIYNVGSENPSRIRIAIEPAQLLKGDIMVKCYHKKFRSATRDVIFRLQFHTGAVQGYGLLFGKEELDSACKDDRFPDYGKIELVFSATPEKIQGSEHLYSDQGVTVDYNTADPLIRWDSYENMSADGEVLHTQGPVDGSLYAKVRKKSASDTGIPSSPQGMPATSSPDHGDHTLSVSSDSGHSTASARTDKTEERLTPGARRGLSPQEKAELDQLLSGFGLEDSASSHKDMTDMRSKYSGTRHVVPAQVHVNGDAALKDRETDILDDEMPHHDLHSVDSLGTLSSSEGPQSTHLGPFTCLKSSQNSLLSDGFGNGVAEDHNGVLSPDLGLGVDTLYDRERMCGGREQKPLQPLLRKPSAPTPVQAYGQSNYSTQTWVRQQQMVAAHQYSFASDGEARLGSRSTVDNTGLAQPPPHIPVTPNRGASSRVAVQRGISNGPNPPDTQQLCPGKALQPRFQDDRVTNGVHQEPNTGSSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHLNALGISAVCPDGVGSGLRCSGRLDSVDGPGRSPGRQGDDPIGGRLRKLSIGQYDNDAASQVTFSKCGWGKAGVDPAPSLGSFSSPEDIKETVITAYPSDLNMIDGRIPNSKESSMCLTPSFPVSPETPYVKTSPRYPPFSPPEPQLSSPASLHKGREPRGCPEIISHTVGMSESPVGPKPTMLRADMPATPNFQQVFASSCTVSSNGPGQRRESPPSAERQWVESSPKSTLTLLGNSHPSESPLGTHEFCSSGKDSPGLPCFQSSELQASFHSHELSMSEPQGALPPAGSQTFLGFNTVTTATSVLPPGEDAGTLLVNSHGTSPAPGTPLLTTGAADNGFLPHNFLTVSPGASSHHSPGLQNQNVSLPGQPPLPEKKRASEGDRSLGSVSPSSSGFSSPHSGSTMSIPFPNVLPDFCKPSEVASPLPDSPNDKLVIVKFVQDTSKFWYKADISREQAIAMLKDKAPGSFIVRDSHSFRGAYGLAMKVATPPPSVLHLNKKAGDLSNELVRHFLIECTPKGVRLKGCSNEPYFGSLTALVCQHSITPLALPCKLLIPERDPLEEIAENSPQTAANSAAELLKQGAACNVWYLNSVEMESLTGHQAVQKALSMTLVQEPPPVSTVVHFKVSAQGITLTDNQRKLFFRRHYPVSSVIFCALDPQDRKWIKDGPSSKVFGFVARKQGSATDNVCHLFAEHDPEQPASAIVNFVSKVMIGSPKKI", "length": 1440 }, "evidence": [ { "id": "F1ST78", "url": "https://omabrowser.org/oma/group/F1ST78/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q68CZ2-1", "protein_name": "Tensin-3", "gene_name": "TNS3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEGHGLDLTYITERIIAVSFPAGCSEESYLHNLQEVTRMLKSKHGDNYLVLNLSEKRYDLTKLNPKIMDVGWPELHAPPLDKMCTICKAQESWLNSNLQHVVVIHCRGGKGRIGVVISSYMHFTNVSASADQALDRFAMKKFYDDKVSALMQPSQKRYVQFLSGLLSGSVKMNASPLFLHFVILHGTPNFDTGGVCRPFLKLYQAMQPVYTSGIYNVGPENPSRICIVIEPAQLLKGDVMVKCYHKKYRSATRDVIFRLQFHTGAVQGYGLVFGKEDLDNASKDDRFPDYGKVELVFSATPEKIQGSEHLYNDHGVIVDYNTTDPLIRWDSYENLSADGEVLHTQGPVDGSLYAKVRKKSSSDPGIPGGPQAIPATNSPDHSDHTLSVSSDSGHSTASARTDKTEERLAPGTRRGLSAQEKAELDQLLSGFGLEDPGSSLKEMTDARSKYSGTRHVVPAQVHVNGDAALKDRETDILDDEMPHHDLHSVDSLGTLSSSEGPQSAHLGPFTCHKSSQNSLLSDGFGSNVGEDPQGTLVPDLGLGMDGPYERERTFGSREPKQPQPLLRKPSVSAQMQAYGQSSYSTQTWVRQQQMVVAHQYSFAPDGEARLVSRCPADNPGLVQAQPRVPLTPTRGTSSRVAVQRGVGSGPHPPDTQQPSPSKAFKPRFPGDQVVNGAGPELSTGPSPGSPTLDIDQSIEQLNRLILELDPTFEPIPTHMNALGSQANGSVSPDSVGGGLRASSRLPDTGEGPSRATGRQGSSAEQPLGGRLRKLSLGQYDNDAGGQLPFSKCAWGKAGVDYAPNLPPFPSPADVKETMTPGYPQDLDIIDGRILSSKESMCSTPAFPVSPETPYVKTALRHPPFSPPEPPLSSPASQHKGGREPRSCPETLTHAVGMSESPIGPKSTMLRADASSTPSFQQAFASSCTISSNGPGQRRESSSSAERQWVESSPKPMVSLLGSGRPTGSPLSAEFSGTRKDSPVLSCFPPSELQAPFHSHELSLAEPPDSLAPPSSQAFLGFGTAPVGSGLPPEEDLGALLANSHGASPTPSIPLTATGAADNGFLSHNFLTVAPGHSSHHSPGLQGQGVTLPGQPPLPEKKRASEGDRSLGSVSPSSSGFSSPHSGSTISIPFPNVLPDFSKASEAASPLPDSPGDKLVIVKFVQDTSKFWYKADISREQAIAMLKDKEPGSFIVRDSHSFRGAYGLAMKVATPPPSVLQLNKKAGDLANELVRHFLIECTPKGVRLKGCSNEPYFGSLTALVCQHSITPLALPCKLLIPERDPLEEIAESSPQTAANSAAELLKQGAACNVWYLNSVEMESLTGHQAIQKALSITLVQEPPPVSTVVHFKVSAQGITLTDNQRKLFFRRHYPVNSVIFCALDPQDRKWIKDGPSSKVFGFVARKQGSATDNVCHLFAEHDPEQPASAIVNFVSKVMIGSPKKV", "length": 1445 }, "evidence": [ { "id": "F1ST78", "url": "https://omabrowser.org/oma/group/F1ST78/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1ST78", "url": "https://www.uniprot.org/uniprotkb/F1ST78" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1ST78", "url": "https://www.uniprot.org/uniprotkb/F1ST78" } ], "pmid": "" }, { "name": "phosphoprotein phosphatase activity", "id": "GO:0004721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004721", "evidence": [ { "database": "UniProtKB", "id": "F1ST78", "url": "https://www.uniprot.org/uniprotkb/F1ST78" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "F1ST78", "url": "https://www.uniprot.org/uniprotkb/F1ST78" } ], "pmid": "" }, { "name": "cell projection", "id": "GO:0042995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042995", "evidence": [ { "database": "UniProtKB", "id": "F1ST78", "url": "https://www.uniprot.org/uniprotkb/F1ST78" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of Rac protein signal transduction", "id": "GO:0035022", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035022", "evidence": [ { "database": "UniProtKB", "id": "F1ST78", "url": "https://www.uniprot.org/uniprotkb/F1ST78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1050, "end_pos": 1052, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 395, "end_pos": 397, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 449, "end_pos": 451, "annotation": "n_glycosylation_sequon" }, { "start_pos": 791, "end_pos": 793, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST78" }, { "id": "PS51182", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51182" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 tensin-type", "eco_id": "ECO_0000259", "start_pos": 289, "end_pos": 415, "start_aa": "Ala", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1ST78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST78" }, { "id": "PS50081", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50081" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phorbol-ester/DAG-type", "eco_id": "ECO_0000259", "start_pos": 34, "end_pos": 82, "start_aa": "Leu", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1ST78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST78" }, { "id": "PS51181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphatase tensin-type", "eco_id": "ECO_0000259", "start_pos": 112, "end_pos": 284, "start_aa": "Arg", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1ST78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST78" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 1290, "end_pos": 1400, "start_aa": "Trp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1ST78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST78" }, { "id": "PS50056", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50056" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine specific protein phosphatases", "eco_id": "ECO_0000259", "start_pos": 217, "end_pos": 273, "start_aa": "Val", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 690, 748, 961 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1050, "end_pos": 1052 }, { "start_pos": 167, "end_pos": 169 }, { "start_pos": 240, "end_pos": 242 }, { "start_pos": 288, "end_pos": 290 }, { "start_pos": 395, "end_pos": 397 }, { "start_pos": 39, "end_pos": 41 }, { "start_pos": 449, "end_pos": 451 }, { "start_pos": 791, "end_pos": 793 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQZ5-1", "uniprot_ac": "F1SQZ5", "uniprot_id": "F1SQZ5_PIG", "mass": { "chemical_mass": 75859.0, "monoisotopic_mass": 75859.0 }, "refseq": {}, "gene_names": [ { "name": "SLCO1C1", "type": "recommended", "evidence": [ { "id": "F1SQZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ] } ], "protein_names": [ { "name": "Solute carrier organic anion transporter family member", "type": "recommended", "evidence": [ { "id": "F1SQZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLCO1C1", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5", "locus": { "chromosome": "5", "start_pos": 52234398, "end_pos": 52315026, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000585", "url": "https://www.ensembl.org/id/ENSSSCG00000000585" } ] } } ], "crossref": [ { "id": "F1SQZ5", "url": "https://alphafold.ebi.ac.uk/entry/F1SQZ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000585", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000585", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17459", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17459", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11388", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11388", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11388:SF99", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11388:SF99", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03137", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03137", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07648", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07648", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-879518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-879518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "71815", "url": "https://www.rhea-db.org/rhea/71815", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "71819", "url": "https://www.rhea-db.org/rhea/71819", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "73311", "url": "https://www.rhea-db.org/rhea/73311", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AR11", "url": "https://www.uniprot.org/uniprotkb/A0A287AR11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AR11-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AR11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQZ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPTAKENIQLFNKNSVQSVGKPSFKTEYPSSEEKQPCCGELKVFLGALSFVYFAKALAEGYLKSTITQIERRFELPSSLVGVIDGSFEIGNLLVITFVSYFGAKLHRPKIIGAGCLIMGVGTLLIAMPQFFMETYKYERYSPFSNSSLSISPCLESNSPLQISVMEKSQSKINNECEIDASSSMWVYVFLGNLLRGIGETPIQPLGIAYLDDFASEDNAAFYIGCVQTVAIIGPIFGFLLGSLCAKLYVDIGFVNLDHLTITPKDPQWVGAWWLGYLIAGIISLLAAVPFWFLPKSLPRTQSREDSNSSSEKSKFIMDDHTDYQTPLGEKAKIMEMAKDFLPSLKSLFGNPVYFLYLCASTIQFNSLFGMVTYKPKYIEQQYGQSSSKANFVIGLINIPAVALGIFSGGIVMKKFKIGVCGASKLYLGSSVLGYLLFLSLFALGCENSDVAGLTVTYQGTKPVSYHERALFSDCNSRCKCSETKWEPMCGENGITYVTACLAGCQTSTGSGKTTIFYNCTCVGTAASKSGNSSGMVGRCQKDNGCPRMFLYFLIISVITSYTLSLGGIPGYILLLGIPSPVYFGVLIDTSCLKWGFKRCGSRGACRLYDSNAFRHIYLGLTMMLGIMSIFLSIAVLFALKKNYVSKHRSFRTKRERTMVSTRIRKENCTTSDHLLQPNYWPGKETQL", "length": 688, "header": "tr|F1SQZ5-1|F1SQZ5_PIG Isoform 1 of Solute carrier organic anion transporter family member OS=Sus scrofa OX=9823 GN=SLCO1C1 PE=3 SV=4 CANONICAL=F1SQZ5-1" }, "isoforms": [ { "isoform_ac": "A0A287AR11-1", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5/entry#A0A287AR11-1", "sequence": { "sequence": "MDPTAKENIQLFNKNSVQSVGKPSFKTEYPSSEEKQPCCGELKVFLGALSFVYFAKALAEGYLKSTITQIERRFELPSSLVGVIDGSFEIGNLLVITFVSYFGAKLHRPKIIGAGCLIMGVGTLLIAMPQFFMETYKYERYSPFSNSSLSISPCLESNSPLQISVMEKSQSKINNGCVQTVAIIGPIFGFLLGSLCAKLYVDIGFVNLDHLTITPKDPQWVGAWWLGYLIAGIISLLAAVPFWFLPKSLPRTQSREDSNSSSEKSKFIMDDHTDYQTPLGEKAKIMEMAKDFLPSLKSLFGNPVYFLYLCASTIQFNSLFGMVTYKPKYIEQQYGQSSSKANFVIGLINIPAVALGIFSGGIVMKKFKIGVCGASKLYLGSSVLGYLLFLSLFALGCENSDVAGLTVTYQGTKPVSYHERALFSDCNSRCKCSETKWEPMCGENGITYVTACLAGCQTSTGSGKTTIFYNCTCVGTAASKSGNSSGMVGRCQKDNGCPRMFLYFLIISVITSYTLSLGGIPGYILLLGIPSPVYFGVLIDTSCLKWGFKRCGSRGACRLYDSNAFRHIYLGLTMMLGIMSIFLSIAVLFALKKNYVSKHRSFRTKRERTMVSTRIRKENCTTSDHLLQPNYWPGKETQL", "length": 639, "header": "tr|A0A287AR11-1|F1SQZ5_PIG Computationally mapped isoform of Solute carrier organic anion transporter family member OS=Sus scrofa OX=9823 GN=SLCO1C1 PE=3 SV=2 CANONICAL=F1SQZ5-1" }, "locus": { "chromosome": "5", "start_pos": 52310158, "end_pos": 52235018, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060652.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060652.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000046495.3", "url": "https://www.ensembl.org/id/ENSSSCP00000046495.3" } ] } }, { "isoform_ac": "F1SQZ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5/entry#F1SQZ5-1", "sequence": { "sequence": "MDPTAKENIQLFNKNSVQSVGKPSFKTEYPSSEEKQPCCGELKVFLGALSFVYFAKALAEGYLKSTITQIERRFELPSSLVGVIDGSFEIGNLLVITFVSYFGAKLHRPKIIGAGCLIMGVGTLLIAMPQFFMETYKYERYSPFSNSSLSISPCLESNSPLQISVMEKSQSKINNECEIDASSSMWVYVFLGNLLRGIGETPIQPLGIAYLDDFASEDNAAFYIGCVQTVAIIGPIFGFLLGSLCAKLYVDIGFVNLDHLTITPKDPQWVGAWWLGYLIAGIISLLAAVPFWFLPKSLPRTQSREDSNSSSEKSKFIMDDHTDYQTPLGEKAKIMEMAKDFLPSLKSLFGNPVYFLYLCASTIQFNSLFGMVTYKPKYIEQQYGQSSSKANFVIGLINIPAVALGIFSGGIVMKKFKIGVCGASKLYLGSSVLGYLLFLSLFALGCENSDVAGLTVTYQGTKPVSYHERALFSDCNSRCKCSETKWEPMCGENGITYVTACLAGCQTSTGSGKTTIFYNCTCVGTAASKSGNSSGMVGRCQKDNGCPRMFLYFLIISVITSYTLSLGGIPGYILLLGIPSPVYFGVLIDTSCLKWGFKRCGSRGACRLYDSNAFRHIYLGLTMMLGIMSIFLSIAVLFALKKNYVSKHRSFRTKRERTMVSTRIRKENCTTSDHLLQPNYWPGKETQL", "length": 688, "header": "tr|F1SQZ5-1|F1SQZ5_PIG Isoform 1 of Solute carrier organic anion transporter family member OS=Sus scrofa OX=9823 GN=SLCO1C1 PE=3 SV=4 CANONICAL=F1SQZ5-1" }, "locus": { "chromosome": "5", "start_pos": 52310158, "end_pos": 52235018, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000630.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000630.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000616.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000616.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AR11", "url": "https://www.uniprot.org/uniprotkb/A0A287AR11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-879518", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-879518", "resource": "Reactome", "description": "Organic anion transport by SLCO transporters" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "monoatomic ion transport", "id": "GO:0006811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006811", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "pmid": "" }, { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "pmid": "" }, { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "pmid": "" }, { "name": "bile acid and bile salt transport", "id": "GO:0015721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015721", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "pmid": "" }, { "name": "sodium-independent organic anion transport", "id": "GO:0043252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043252", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "pmid": "" }, { "name": "positive regulation of thyroid hormone generation", "id": "GO:2000611", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000611", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "bile acid transmembrane transporter activity", "id": "GO:0015125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015125", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "pmid": "" }, { "name": "thyroid hormone transmembrane transporter activity", "id": "GO:0015349", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015349", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ5", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 519, "end_pos": 521, "annotation": "n_glycosylation_sequon" }, { "start_pos": 532, "end_pos": 534, "annotation": "n_glycosylation_sequon" }, { "start_pos": 668, "end_pos": 670, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "71815", "name": "", "equation": "3,3',5'-triiodo-L-thyronine(out) = 3,3',5'-triiodo-L-thyronine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71815", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71815" } ] }, { "id": "71819", "name": "", "equation": "L-thyroxine(out) = L-thyroxine(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "71819", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/71819" } ] }, { "id": "73311", "name": "", "equation": "L-thyroxine sulfate(out) = L-thyroxine sulfate(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "73311", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/73311" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQZ5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 688, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQZ5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQZ5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQZ5" }, { "id": "PS51465", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51465" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kazal-like", "eco_id": "ECO_0000259", "start_pos": 469, "end_pos": 524, "start_aa": "Arg", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 308, "end_pos": 310 }, { "start_pos": 519, "end_pos": 521 }, { "start_pos": 532, "end_pos": 534 }, { "start_pos": 668, "end_pos": 670 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUP2-1", "uniprot_ac": "F1SUP2", "uniprot_id": "F1SUP2_PIG", "mass": { "chemical_mass": 31420.0, "monoisotopic_mass": 31420.0 }, "refseq": {}, "gene_names": [ { "name": "SPCS2", "type": "recommended", "evidence": [ { "id": "F1SUP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP2" } ] } ], "protein_names": [ { "name": "Signal peptidase complex subunit 2", "type": "recommended", "evidence": [ { "id": "F1SUP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the signal peptidase complex (SPC) which catalyzes the cleavage of N-terminal signal sequences from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Enhances the enzymatic activity of SPC and facilitates the interactions between different components of the translocation site.", "evidence": [ { "database": "UniProtKB", "id": "F1SUP2", "url": "https://www.uniprot.org/uniprotkb/F1SUP2#function" }, { "database": "UniProtKB", "id": "RU368033", "url": "https://www.uniprot.org/uniprotkb/RU368033#function" }, { "database": "UniProtKB", "id": "ARBA00045608", "url": "https://www.uniprot.org/uniprotkb/ARBA00045608#function" }, { "database": "UniProtKB", "id": "A0A287AT41", "url": "https://www.uniprot.org/uniprotkb/A0A287AT41#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUP2", "url": "https://www.uniprot.org/uniprotkb/F1SUP2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPCS2", "url": "https://www.uniprot.org/uniprotkb/F1SUP2", "locus": { "chromosome": "9", "start_pos": 9305599, "end_pos": 9280631, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014850", "url": "https://www.ensembl.org/id/ENSSSCG00000014850" } ] } } ], "crossref": [ { "id": "F1SUP2", "url": "https://alphafold.ebi.ac.uk/entry/F1SUP2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014850", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014850", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009582", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13085", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13085", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13085:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13085:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06703", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06703", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-422085", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-422085", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9768727", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9768727", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AT41", "url": "https://www.uniprot.org/uniprotkb/A0A287AT41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AT41-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AT41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUP2", "url": "https://www.uniprot.org/uniprotkb/F1SUP2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUP2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUP2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGASDYYKSQQAPRPLPLATSRQPALNYGSRCTPRGTPRRQFQPISFGQVGGEGDAQAGKMAAAAAQGGRSGGGGGSSGAGGGPSCGTGSSRSGLLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYPLKSGLFSTDSFLKSLRIIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK", "length": 288, "header": "tr|F1SUP2-1|F1SUP2_PIG Isoform 1 of Signal peptidase complex subunit 2 OS=Sus scrofa OX=9823 GN=SPCS2 PE=1 SV=5 CANONICAL=F1SUP2-1" }, "isoforms": [ { "isoform_ac": "A0A287AT41-1", "url": "https://www.uniprot.org/uniprotkb/F1SUP2/entry#A0A287AT41-1", "sequence": { "sequence": "MAAAAAQGGRSGGGGGSSGAGGGPSCGTGSSRSGLLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKEKSIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK", "length": 157, "header": "tr|A0A287AT41-1|F1SUP2_PIG Computationally mapped isoform of Signal peptidase complex subunit 2 OS=Sus scrofa OX=9823 GN=SPCS2 PE=1 SV=1 CANONICAL=F1SUP2-1" }, "locus": { "chromosome": "9", "start_pos": 9304888, "end_pos": 9280849, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058117.2", "url": "https://www.ensembl.org/id/ENSSSCT00000058117.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047246.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047246.2" } ] } }, { "isoform_ac": "F1SUP2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUP2/entry#F1SUP2-1", "sequence": { "sequence": "MAGASDYYKSQQAPRPLPLATSRQPALNYGSRCTPRGTPRRQFQPISFGQVGGEGDAQAGKMAAAAAQGGRSGGGGGSSGAGGGPSCGTGSSRSGLLDKWKIDDKPVKIDKWDGSAVKNSLDDSAKKVLLEKYKYVENFGLIDGRLTICTISCFFAIVALIWDYMHPFPESKPVLALCVISYPLKSGLFSTDSFLKSLRIIFLVAHRKDPTGMDPDDIWQLSSSLKRFDDKYTLKLTFISGRTKQQREAEFTKSIAKFFDHSGTLVMDAYEPEISRLHDSLATERKIK", "length": 288, "header": "tr|F1SUP2-1|F1SUP2_PIG Isoform 1 of Signal peptidase complex subunit 2 OS=Sus scrofa OX=9823 GN=SPCS2 PE=1 SV=5 CANONICAL=F1SUP2-1" }, "locus": { "chromosome": "9", "start_pos": 9304888, "end_pos": 9280666, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016202.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016202.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015769.5", "url": "https://www.ensembl.org/id/ENSSSCP00000015769.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AT41", "url": "https://www.uniprot.org/uniprotkb/A0A287AT41" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-422085", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-422085", "resource": "Reactome", "description": "Synthesis, secretion, and deacylation of Ghrelin" }, { "id": "R-SSC-9768727", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9768727", "resource": "Reactome", "description": "Regulation of CDH1 posttranslational processing and trafficking to plasma membrane" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "F1SUP2", "url": "https://www.uniprot.org/uniprotkb/F1SUP2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal peptide processing", "id": "GO:0006465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006465", "evidence": [ { "database": "UniProtKB", "id": "F1SUP2", "url": "https://www.uniprot.org/uniprotkb/F1SUP2" } ], "pmid": "" }, { "name": "protein targeting to ER", "id": "GO:0045047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045047", "evidence": [ { "database": "UniProtKB", "id": "F1SUP2", "url": "https://www.uniprot.org/uniprotkb/F1SUP2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "signal peptidase complex", "id": "GO:0005787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005787", "evidence": [ { "database": "UniProtKB", "id": "F1SUP2", "url": "https://www.uniprot.org/uniprotkb/F1SUP2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUP2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 288, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUP2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUP2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV35-1", "uniprot_ac": "F1SV35", "uniprot_id": "F1SV35_PIG", "mass": { "chemical_mass": 35354.0, "monoisotopic_mass": 35354.0 }, "refseq": { "ac": "XP_005667349", "name": "L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667349" }, "gene_names": [ { "name": "AASDHPPT", "type": "recommended", "evidence": [ { "id": "F1SV35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV35" } ] }, { "name": "AASDHPPT", "type": "synonym", "evidence": [ { "id": "XP_005667349", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667349" } ] } ], "protein_names": [ { "name": "L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase", "type": "recommended", "evidence": [ { "id": "F1SV35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV35/entry#names_and_taxonomy" } ] }, { "name": "2.7.8.7", "type": "synonym", "evidence": [ { "id": "F1SV35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV35/entry#names_and_taxonomy" } ] }, { "name": "4'-phosphopantetheinyl transferase", "type": "synonym", "evidence": [ { "id": "F1SV35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV35/entry#names_and_taxonomy" } ] }, { "name": "Alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase", "type": "synonym", "evidence": [ { "id": "F1SV35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV35/entry#names_and_taxonomy" } ] }, { "name": "L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005667349", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667349" } ] } ], "function": [ { "annotation": "Catalyzes the post-translational modification of target proteins by phosphopantetheine. Can transfer the 4'-phosphopantetheine moiety from coenzyme A, regardless of whether the CoA is presented in the free thiol form or as an acetyl thioester, to a serine residue of a broad range of acceptors including the acyl carrier domain of FASN.", "evidence": [ { "database": "UniProtKB", "id": "F1SV35", "url": "https://www.uniprot.org/uniprotkb/F1SV35#function" }, { "database": "UniProtKB", "id": "ARBA00057666", "url": "https://www.uniprot.org/uniprotkb/ARBA00057666#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV35", "url": "https://www.uniprot.org/uniprotkb/F1SV35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AASDHPPT", "url": "https://www.uniprot.org/uniprotkb/F1SV35", "locus": { "chromosome": "9", "start_pos": 35948575, "end_pos": 35839917, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014998", "url": "https://www.ensembl.org/id/ENSSSCG00000014998" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014998", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014998", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525064", "url": "https://www.ncbi.nlm.nih.gov/gene/100525064", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050559", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050559", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WVFEESL", "url": "https://omabrowser.org/oma/group/WVFEESL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV35", "url": "https://www.orthodb.org/?gene=F1SV35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12215", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12215", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12215:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12215:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01648", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01648", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22624", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22624", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-199220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-199220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005667349", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667349", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "12068", "url": "https://www.rhea-db.org/rhea/12068", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46564", "url": "https://www.rhea-db.org/rhea/46564", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AUH5", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AUH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEY7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QEY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QEY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV35", "url": "https://www.uniprot.org/uniprotkb/F1SV35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV35-1", "url": "https://www.uniprot.org/uniprotkb/F1SV35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVFPAKRVCLVPAMEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAALAGRLMIRKLVAEKLNIPWNNIRLQRTAKGKPVLAKDSLNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDISPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVAVRKPSGSRHQDVTSQDDSKPTQRQFTILTFNDLISSAVPMTPEDPSFWDCFCFTEEIPIRNV", "length": 306, "header": "tr|F1SV35-1|F1SV35_PIG Isoform 1 of L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Sus scrofa OX=9823 GN=AASDHPPT PE=1 SV=2 CANONICAL=F1SV35-1" }, "isoforms": [ { "isoform_ac": "A0A287AUH5-1", "url": "https://www.uniprot.org/uniprotkb/F1SV35/entry#A0A287AUH5-1", "sequence": { "sequence": "MPELNGYSARLVILNTPQKVIERGSLAIVQGEGIWSPGIRCYHPTPPSEPRDHPPATAVSEVSTPVSASRGQIAIGLYLCPVSSSPSAGRLMIRKLVAEKLNIPWNNIRLQRTAKGKPVLAKDSLNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDISPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVAVRKPSGSRHQDVTSQDDSKPTQRQFTILTFNDLISSAVPMTPEDPSFWDCFCFTEEIPIRNGTKS", "length": 335, "header": "tr|A0A287AUH5-1|F1SV35_PIG Computationally mapped isoform of L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Sus scrofa OX=9823 GN=AASDHPPT PE=1 SV=2 CANONICAL=F1SV35-1" }, "locus": { "chromosome": "9", "start_pos": 35946191, "end_pos": 35872694, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060544.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060544.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047584.2", "url": "https://www.ensembl.org/id/ENSSSCP00000047584.2" } ] } }, { "isoform_ac": "A0A5G2QEY7-1", "url": "https://www.uniprot.org/uniprotkb/F1SV35/entry#A0A5G2QEY7-1", "sequence": { "sequence": "MLRLPLNIPLFSKGTLHVVGPKNIDIHRLVLHTVNYRSPATAGRLMIRKLVAEKLNIPWNNIRLQRTAKGKPVLAKDSLNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDISPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVAVRKPSGSRHQDVTSQDDSKPTQRQFTILTFNDLISSAVPMTPEDPSFWDCFCFTEEIPIRNGTKS", "length": 289, "header": "tr|A0A5G2QEY7-1|F1SV35_PIG Computationally mapped isoform of L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Sus scrofa OX=9823 GN=AASDHPPT PE=1 SV=1 CANONICAL=F1SV35-1" }, "locus": { "chromosome": "9", "start_pos": 35946191, "end_pos": 35904642, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078159.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078159.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062275.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062275.1" } ] } }, { "isoform_ac": "F1SV35-1", "url": "https://www.uniprot.org/uniprotkb/F1SV35/entry#F1SV35-1", "sequence": { "sequence": "MVFPAKRVCLVPAMEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAALAGRLMIRKLVAEKLNIPWNNIRLQRTAKGKPVLAKDSLNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDISPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVAVRKPSGSRHQDVTSQDDSKPTQRQFTILTFNDLISSAVPMTPEDPSFWDCFCFTEEIPIRNV", "length": 306, "header": "tr|F1SV35-1|F1SV35_PIG Isoform 1 of L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Sus scrofa OX=9823 GN=AASDHPPT PE=1 SV=2 CANONICAL=F1SV35-1" }, "locus": { "chromosome": "9", "start_pos": 35946295, "end_pos": 35904100, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016362.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016362.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015923.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015923.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AUH5", "url": "https://www.uniprot.org/uniprotkb/A0A287AUH5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-199220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-199220", "resource": "Reactome", "description": "Vitamin B5 (pantothenate) metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "B2RYJ4-1", "protein_name": "L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase", "gene_name": "Aasdhppt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVFPAKRLCVVPYMEGVRWAFSCGTWLPSPAEWLLAVRSIQPEEKERIGQFVFARDAKAALAGRLMIRKLVAEKLNIPWDHIRLQRTSKGKPILAKDTLNPYPNFNFNISHQGDYTVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFNDEWSQLDMFYRHWALKESFIKAIGVGLGFEMQRLEFDVSPLSMDIGQVYKETRLILDGEEEKEWAFEESKIDQHHFVAVALRKPDGSRHQNVSYQDDSKPSQRQFTILNFNDLIASAIPMTPEDPSFWDCFCFTEEILIRNGSKS", "length": 309 }, "evidence": [ { "id": "F1SV35", "url": "https://omabrowser.org/oma/group/F1SV35/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CQF6-1", "protein_name": "L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase", "gene_name": "Aasdhppt", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVFPAKRLCVVPSMEGVRWAFSCGTWLPSRAEWLLAMRSIQPEEKERIGKFVFARDAKAALAGRLMIRKLVAEKLNIPWDHIRLQRTSKGKPVLAKDSLNPYPNFNFNISHQGDYAVLAAEPEVQVGIDIMKTSFPGRGSIPEFFHIMKRKFTKKEWETIRSFNDEWTQLDMFYRHWALKESFIKAIGVGLGFEMQRLEFDVSPLNMDIGQVYKETCLILDGEEEKEWAFEESKIDEHHFVAVAVRKPDGSRHQNVSYQDDSKLSQRKFTILNFNDLVASAIPMTPEDPSFWDCFCFTEEILIRNGTKS", "length": 309 }, "evidence": [ { "id": "F1SV35", "url": "https://omabrowser.org/oma/group/F1SV35/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NRN7-1", "protein_name": "L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase", "gene_name": "AASDHPPT", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVFPAKRFCLVPSMEGVRWAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEKLNIPWNHIRLQRTAKGKPVLAKDSSNPYPNFNFNISHQGDYAVLAAEPELQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGLGFELQRLEFDLSPLNLDIGQVYKETRLFLDGEEEKEWAFEESKIDEHHFVAVALRKPDGSRHQDVPSQDDSKPTQRQFTILNFNDLMSSAVPMTPEDPSFWDCFCFTEEIPIRNGTKS", "length": 309 }, "evidence": [ { "id": "F1SV35", "url": "https://omabrowser.org/oma/group/F1SV35/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F1SV35", "url": "https://www.uniprot.org/uniprotkb/F1SV35" } ], "pmid": "" }, { "name": "holo-[acyl-carrier-protein] synthase activity", "id": "GO:0008897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008897", "evidence": [ { "database": "UniProtKB", "id": "F1SV35", "url": "https://www.uniprot.org/uniprotkb/F1SV35" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SV35", "url": "https://www.uniprot.org/uniprotkb/F1SV35" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "F1SV35", "url": "https://www.uniprot.org/uniprotkb/F1SV35" } ], "pmid": "" }, { "name": "lysine biosynthetic process via aminoadipic acid", "id": "GO:0019878", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019878", "evidence": [ { "database": "UniProtKB", "id": "F1SV35", "url": "https://www.uniprot.org/uniprotkb/F1SV35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "12068", "name": "", "equation": "apo-[ACP] + CoA = holo-[ACP] + adenosine 3',5'-bisphosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "12068", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/12068" } ] }, { "id": "46564", "name": "", "equation": "apo-[ACP] + acetyl-CoA = acetyl-[ACP] + adenosine 3',5'-bisphosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46564", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46564" } ] }, { "id": "R-SSC-199202", "name": "Phosphopantetheine conjugation of the ACP domain of FAS", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-SSC-199233" ], "output_participant_list": [ "R-SSC-54659" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-199202", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-199202" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-199233", "participant_name": "FASN [cytosol]", "crossref": [ { "id": "I3LCW1", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000029944", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000021889", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000026033", "database": "ENSEMBL", "url": "" }, { "id": "88016", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-54659", "participant_name": "phospho-FASN [cytosol]", "crossref": [ { "id": "ENSSSCT00000026033", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000029944", "database": "ENSEMBL", "url": "" }, { "id": "I3LCW1", "database": "UniProt", "url": "" }, { "id": "88016", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000021889", "database": "ENSEMBL", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV35" }, { "id": "PF01648", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01648" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "4'-phosphopantetheinyl transferase", "eco_id": "ECO_0000259", "start_pos": 125, "end_pos": 242, "start_aa": "Gln", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV35" }, { "id": "PF22624", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22624" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "4'-phosphopantetheinyl transferase N-terminal", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 122, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5S7-1", "uniprot_ac": "F2Z5S7", "uniprot_id": "F2Z5S7_PIG", "mass": { "chemical_mass": 20860.0, "monoisotopic_mass": 20860.0 }, "refseq": {}, "gene_names": [ { "name": "COPZ1", "type": "recommended", "evidence": [ { "id": "F2Z5S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7" } ] } ], "protein_names": [ { "name": "Coatomer subunit zeta", "type": "recommended", "evidence": [ { "id": "F2Z5S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1FF06", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FF06#function" }, { "database": "UniProtKB", "id": "ARBA00045555", "url": "https://www.uniprot.org/uniprotkb/ARBA00045555#function" }, { "database": "UniProtKB", "id": "A0A5G2QBJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBJ4#function" }, { "database": "UniProtKB", "id": "A0A5G2QVD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD5#function" }, { "database": "UniProtKB", "id": "F2Z5S7", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7#function" }, { "database": "UniProtKB", "id": "A0A287AWH8", "url": "https://www.uniprot.org/uniprotkb/A0A287AWH8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5S7", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COPZ1", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7", "locus": { "chromosome": "5", "start_pos": 19542372, "end_pos": 19522613, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000290", "url": "https://www.ensembl.org/id/ENSSSCG00000000290" } ] } } ], "crossref": [ { "id": "F2Z5S7", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5S7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000290", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000290", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14829", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14829", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11043", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11043", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11043:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11043:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01217", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01217", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6807878", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811434", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AWH8", "url": "https://www.uniprot.org/uniprotkb/A0A287AWH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBJ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVD5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FF06", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FF06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1FF06-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FF06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5S7", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5S7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFISLQEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVYLFSLHPPSGLEFFWNFPN", "length": 182, "header": "tr|F2Z5S7-1|F2Z5S7_PIG Isoform 1 of Coatomer subunit zeta OS=Sus scrofa OX=9823 GN=COPZ1 PE=1 SV=3 CANONICAL=F2Z5S7-1" }, "isoforms": [ { "isoform_ac": "A0A287AWH8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7/entry#A0A287AWH8-1", "sequence": { "sequence": "MEALILEPSLYTVKAILILDNDGDRLFAKERNPRSRAVTNHSRLPALTTQPVSFPSDQYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR", "length": 206, "header": "tr|A0A287AWH8-1|F2Z5S7_PIG Computationally mapped isoform of Coatomer subunit zeta OS=Sus scrofa OX=9823 GN=COPZ1 PE=1 SV=2 CANONICAL=F2Z5S7-1" }, "locus": { "chromosome": "5", "start_pos": 19541075, "end_pos": 19522638, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050520.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050520.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048488.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048488.2" } ] } }, { "isoform_ac": "A0A5G2QBJ4-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7/entry#A0A5G2QBJ4-1", "sequence": { "sequence": "MQRHLSIPLQSQWDQGKGFGLLVVARAFRTEGMFISLQEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLLR", "length": 209, "header": "tr|A0A5G2QBJ4-1|F2Z5S7_PIG Computationally mapped isoform of Coatomer subunit zeta OS=Sus scrofa OX=9823 GN=COPZ1 PE=1 SV=1 CANONICAL=F2Z5S7-1" }, "locus": { "chromosome": "5", "start_pos": 19541075, "end_pos": 19533592, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081626.1", "url": "https://www.ensembl.org/id/ENSSSCT00000081626.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061853.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061853.1" } ] } }, { "isoform_ac": "A0A5G2QVD5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7/entry#A0A5G2QVD5-1", "sequence": { "sequence": "MQRHLSIPLQSQWDQGKGFGLLVVARAFRTEGMFISLQEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRVSETMPCCLPLLLTLQRSGAPAQGSHGSGLVEYL", "length": 215, "header": "tr|A0A5G2QVD5-1|F2Z5S7_PIG Computationally mapped isoform of Coatomer subunit zeta OS=Sus scrofa OX=9823 GN=COPZ1 PE=1 SV=1 CANONICAL=F2Z5S7-1" }, "locus": { "chromosome": "5", "start_pos": 19539092, "end_pos": 19533592, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083749.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083749.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068933.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068933.1" } ] } }, { "isoform_ac": "A0A8D1FF06-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7/entry#A0A8D1FF06-1", "sequence": { "sequence": "MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRVLQSAKEQIKWSLLR", "length": 164, "header": "tr|A0A8D1FF06-1|F2Z5S7_PIG Computationally mapped isoform of Coatomer subunit zeta OS=Sus scrofa OX=9823 GN=COPZ1 PE=1 SV=1 CANONICAL=F2Z5S7-1" }, "locus": { "chromosome": "5", "start_pos": 19541075, "end_pos": 19522638, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099135.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099135.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076173.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076173.1" } ] } }, { "isoform_ac": "F2Z5S7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7/entry#F2Z5S7-1", "sequence": { "sequence": "MFISLQEPSLYTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVYLFSLHPPSGLEFFWNFPN", "length": 182, "header": "tr|F2Z5S7-1|F2Z5S7_PIG Isoform 1 of Coatomer subunit zeta OS=Sus scrofa OX=9823 GN=COPZ1 PE=1 SV=3 CANONICAL=F2Z5S7-1" }, "locus": { "chromosome": "5", "start_pos": 19540858, "end_pos": 19533688, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000311.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000311.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000306.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000306.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1FF06", "url": "https://www.uniprot.org/uniprotkb/A0A8D1FF06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6807878", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807878", "resource": "Reactome", "description": "COPI-mediated anterograde transport" }, { "id": "R-SSC-6811434", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811434", "resource": "Reactome", "description": "COPI-dependent Golgi-to-ER retrograde traffic" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F2Z5S7", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7" } ], "pmid": "" }, { "name": "COPI vesicle coat", "id": "GO:0030126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030126", "evidence": [ { "database": "UniProtKB", "id": "F2Z5S7", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F2Z5S7", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7" } ], "pmid": "" }, { "name": "retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum", "id": "GO:0006890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006890", "evidence": [ { "database": "UniProtKB", "id": "F2Z5S7", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7" } ], "pmid": "" }, { "name": "intra-Golgi vesicle-mediated transport", "id": "GO:0006891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006891", "evidence": [ { "database": "UniProtKB", "id": "F2Z5S7", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5S7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 182, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5S7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5S7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5S7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5S7" }, { "id": "PF01217", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01217" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AP complex mu/sigma subunit", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 151, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 50, "end_pos": 52 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS65-1", "uniprot_ac": "F1SS65", "uniprot_id": "F1SS65_PIG", "mass": { "chemical_mass": 223203.0, "monoisotopic_mass": 223203.0 }, "refseq": { "ac": "XP_020921683", "name": "myosin-1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921683" }, "gene_names": [ { "name": "MYH1", "type": "recommended", "evidence": [ { "id": "F1SS65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ] }, { "name": "MYH1", "type": "synonym", "evidence": [ { "id": "XP_020921683", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921683" } ] } ], "protein_names": [ { "name": "Myosin, heavy chain 1, skeletal muscle, adult", "type": "synonym", "evidence": [ { "id": "F1SS65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS65/entry#names_and_taxonomy" } ] }, { "name": "myosin-1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020921683", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921683" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYH1", "url": "https://www.uniprot.org/uniprotkb/F1SS65", "locus": { "chromosome": "12", "start_pos": 55225590, "end_pos": 55249340, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000054680", "url": "https://www.ensembl.org/id/ENSSSCG00000054680" } ] } } ], "crossref": [ { "id": "ENSSSCG00000029441", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029441", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01377", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01377", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14910", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14910", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100125538", "url": "https://www.ncbi.nlm.nih.gov/gene/100125538", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002928", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002928", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SS65", "url": "https://www.orthodb.org/?gene=F1SS65", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00063", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00063", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01576", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01576", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921683", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921683", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BCH4", "url": "https://www.uniprot.org/uniprotkb/A0A287BCH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BCH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BCH4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7D6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7D6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7D6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7D6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBU2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBU2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBU2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS65-1", "url": "https://www.uniprot.org/uniprotkb/F1SS65-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSDQEMAIFGEAAPYLRKSEKERIEAQNKPFDAKTSVFVAEPKESFVKGTVQSREGGKVTVKTEAGATLTVKEDQVFPMNPPKFDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEEPTSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPELIEMLLITTNPYDYTFVSQGEITVPSIDDQEELMATDSAIEILGFTSDERVSIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLQGLNSADLLKALCYPRVKVGNEFVTKGQTVQQVYNAVGALAKAVYDKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLGKSNNFQKPKPAKGKVEAHFSLIHYAGTVDYNITGWLDKNKDPLNETVVGLYQKSSVKTLAFLFTGAAGADAEAGGGKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGQFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFKAGLLGLLEEMRDEKLAQLITRTQARCRGFLARVEYQKMVERRESIFCIQYNIRAFMNVKHWPWMKLYFKIKPLLKSAETEKEMANMKEEFEKTKESLAKAEAKRKELEEKMVALMQEKNDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSNLQSKIEDEQALAMQLQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEKMCRTLEDQLSELKTKEEEQQRLINDLTAQRARLQTESGEYSRQLDEKDTLVSQLSRGKQAFTQQIEELKRQLEEEIKAKSALAHAVQSSRHDCDLLREQYEEEQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAVNAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKILAEWKQKYEETHAELEASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKSEIQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQLKRNHVRVVESMQSMLDAEIRSRNDAIRLKKKMEGDLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNVETVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE", "length": 1939, "header": "tr|F1SS65-1|F1SS65_PIG Isoform 1 of Myosin, heavy chain 1, skeletal muscle, adult OS=Sus scrofa OX=9823 GN=MYH1 PE=3 SV=5 CANONICAL=F1SS65-1" }, "isoforms": [ { "isoform_ac": "A0A287BCH4-1", "url": "https://www.uniprot.org/uniprotkb/F1SS65/entry#A0A287BCH4-1", "sequence": { "sequence": "MSSDQEMAIFGEAAPYLRKSEKERIEAQNKPFDAKTSVFVAEPKESFVKGTVQSREGGKVTVKTEAGATLTVKEDQVFPMNPPKFDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEEPTSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPELIEMLLITTNPYDYTFVSQGEITVPSIDDQEELMATDSAIEILGFTSDERVSIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLQGLNSADLLKALCYPRVKVGNEFVTKGQTVQQVYNAVGALAKAVYDKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLGKSNNFQKPKPAKGKVEAHFSLIHYAGTVDYNITGWLDKNKDPLNETVVGLYQKSSVKTLAFLFTGAAGADAEAGGGKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGQFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFKAGLLGLLEEMRDEKLAQLITRTQARCRGFLARVEYQKMVERRESIFCIQYNIRAFMNVKHWPWMKLYFKIKPLLKSAETEKEMANMKEEFEKTKESLAKAEAKRKELEEKMVALMQEKNDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSNLQSKIEDEQALAMQLQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEKMCRTLEDQLSELKTKEEEQQRLINDLTAQRARLQTESGEYSRQLDEKDTLVSQLSRGKQAFTQQIEELKRQLEEEIKVSPIYRYCCSCHFPYIKLRDQSLCSQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAVNAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKILAEWKQKYEETHAELEASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKSEIQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQLKRNHVRVVESMQSMLDAEIRSRNDAIRLKKKMEGDLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNVETVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE", "length": 1938, "header": "tr|A0A287BCH4-1|F1SS65_PIG Computationally mapped isoform of Myosin, heavy chain 1, skeletal muscle, adult OS=Sus scrofa OX=9823 GN=MYH1 PE=3 SV=3 CANONICAL=F1SS65-1" }, "locus": { "chromosome": "12", "start_pos": 55249304, "end_pos": 55225694, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064728.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064728.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053821.3", "url": "https://www.ensembl.org/id/ENSSSCP00000053821.3" } ] } }, { "isoform_ac": "A0A5G2Q7D6-1", "url": "https://www.uniprot.org/uniprotkb/F1SS65/entry#A0A5G2Q7D6-1", "sequence": { "sequence": "MSSDQEMAIFGEAAPYLRKSEKERIEAQNKPFDAKTSVFVAEPKESFVKGTVQSREGGKVTVKTEAGATLTVKEDQVFPMNPPKFDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEEPTSDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPELIEMLLITTNPYDYTFVSQGEITVPSIDDQEELMATDSAIEILGFTSDERVSIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLQGLNSADLLKALCYPRVKVGNEFVTKGQTVQQVYNAVGALAKAVYDKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLGKSNNFQKPKPAKGKVEAHFSLIHYAGTVDYNITGWLDKNKDPLNETVVGLYQKSSVKTLAFLFTGFFSILWIKAGSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGQFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFKAGLLGLLEEMRDEKLAQLITRTQARCRGFLARVEYQKMVERRESIFCIQYNIRAFMNVKHWPWMKLYFKIKPLLKSAETEKEMANMKEEFEKTKESLAKAEAKRKELEEKMVALMQEKNDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSNLQSKIEDEQALAMQLQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEKMCRTLEDQLSELKTKEEEQQRLINDLTAQRARLQTESGEYSRQLDEKDTLVSQLSRGKQAFTQQIEELKRQLEEEIKVNFLLVAYWSLGTKHHFKDIKLRDQSLCSQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAVNAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKILAEWKQKYEETHAELEASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKSEIQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQLKRNHVRVVESMQSMLDAEIRSRNDAIRLKKKMEGDLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIIQEARNAEEKAKKAITDKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNVETVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE", "length": 1894, "header": "tr|A0A5G2Q7D6-1|F1SS65_PIG Computationally mapped isoform of Myosin, heavy chain 1, skeletal muscle, adult OS=Sus scrofa OX=9823 GN=MYH1 PE=3 SV=2 CANONICAL=F1SS65-1" }, "locus": { "chromosome": "12", "start_pos": 55249304, "end_pos": 55225694, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073295.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073295.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059984.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059984.2" } ] } }, { "isoform_ac": "A0A5G2RBU2-1", "url": "https://www.uniprot.org/uniprotkb/F1SS65/entry#A0A5G2RBU2-1", "sequence": { "sequence": "MSSDQEMAIFGEAAPYLRKSEKERIEAQNKPFDAKTSVFVAEPKESFVKGTVQSREGGKVTVKTEAGATLTVKEDQVFPMNPPKFDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEEPTSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPELIEMLLITTNPYDYTFVSQGEITVPSIDDQEELMATDSAIEILGFTSDERVSIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLQGLNSADLLKALCYPRVKVGNEFVTKGQTVQQVYNAVGALAKAVYDKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLGKSNNFQKPKPAKGKVEAHFSLIHYAGTVDYNITGWLDKNKDPLNETVVGLYQKSSVKTLAFLFTGFFSILWIKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGQFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFKAGLLGLLEEMRDEKLAQLITRTQARCRGFLARVEYQKMVERRESIFCIQYNIRAFMNVKHWPWMKLYFKIKPLLKSAETEKEMANMKEEFEKTKESLAKAEAKRKELEEKMVALMQEKNDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSNLQSKIEDEQALAMQLQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEKMCRTLEDQLSELKTKEEEQQRLINDLTAQRARLQTESGEYSRQLDEKDTLVSQLSRGKQAFTQQIEELKRQLEEEIKVSPIYRYCCSCHFPYIKLRDQSLCSQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAVNAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKILAEWKQKYEETHAELEASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKSEIQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQLKRNHVRVVESMQSMLDAEIRSRNDAIRLKKKMEGDLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNVETVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE", "length": 1934, "header": "tr|A0A5G2RBU2-1|F1SS65_PIG Computationally mapped isoform of Myosin, heavy chain 1, skeletal muscle, adult OS=Sus scrofa OX=9823 GN=MYH1 PE=3 SV=2 CANONICAL=F1SS65-1" }, "locus": { "chromosome": "12", "start_pos": 55249304, "end_pos": 55225694, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077008.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077008.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073820.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073820.2" } ] } }, { "isoform_ac": "F1SS65-1", "url": "https://www.uniprot.org/uniprotkb/F1SS65/entry#F1SS65-1", "sequence": { "sequence": "MSSDQEMAIFGEAAPYLRKSEKERIEAQNKPFDAKTSVFVAEPKESFVKGTVQSREGGKVTVKTEAGATLTVKEDQVFPMNPPKFDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEEPTSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKAERSYHIFYQIMSNKKPELIEMLLITTNPYDYTFVSQGEITVPSIDDQEELMATDSAIEILGFTSDERVSIYKLTGAVMHYGNLKFKQKQREEQAEPDGTEVADKAAYLQGLNSADLLKALCYPRVKVGNEFVTKGQTVQQVYNAVGALAKAVYDKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLGKSNNFQKPKPAKGKVEAHFSLIHYAGTVDYNITGWLDKNKDPLNETVVGLYQKSSVKTLAFLFTGAAGADAEAGGGKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRILYADFKQRYKVLNASAIPEGQFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFKAGLLGLLEEMRDEKLAQLITRTQARCRGFLARVEYQKMVERRESIFCIQYNIRAFMNVKHWPWMKLYFKIKPLLKSAETEKEMANMKEEFEKTKESLAKAEAKRKELEEKMVALMQEKNDLQLQVQAEADSLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQEKKLRMDLERAKRKLEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSNLQSKIEDEQALAMQLQKKIKELQARIEELEEEIEAERASRAKAEKQRSDLSRELEEISERLEEAGGATSAQIEMNKKREAEFQKMRRDLEEATLQHEATAATLRKKHADSVAELGEQIDNLQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEKMCRTLEDQLSELKTKEEEQQRLINDLTAQRARLQTESGEYSRQLDEKDTLVSQLSRGKQAFTQQIEELKRQLEEEIKAKSALAHAVQSSRHDCDLLREQYEEEQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQDAEEHVEAVNAKCASLEKTKQRLQNEVEDLMIDVERSNAACAALDKKQRNFDKILAEWKQKYEETHAELEASQKESRSLSTELFKVKNAYEESLDQLETLKRENKNLQQEISDLTEQIAEGGKRIHELEKIKKQVEQEKSEIQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEIDQLKRNHVRVVESMQSMLDAEIRSRNDAIRLKKKMEGDLNEMEIQLNHANRMAAEALRNYRNTQGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKVAEQELLDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIIQEARNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVRELEGEVESEQKRNVETVKGLRKHERRVKELTYQTEEDRKNILRLQDLVDKLQAKVKSYKRQAEEAEEQSNVNLSKFRKLQHELEEAEERADIAESQVNKLRVKSREVHTKIISEE", "length": 1939, "header": "tr|F1SS65-1|F1SS65_PIG Isoform 1 of Myosin, heavy chain 1, skeletal muscle, adult OS=Sus scrofa OX=9823 GN=MYH1 PE=3 SV=5 CANONICAL=F1SS65-1" }, "locus": { "chromosome": "12", "start_pos": 55249304, "end_pos": 55225694, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019596.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019596.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019077.5", "url": "https://www.ensembl.org/id/ENSSSCP00000019077.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BCH4", "url": "https://www.uniprot.org/uniprotkb/A0A287BCH4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "cytoskeletal motor activity", "id": "GO:0003774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003774", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "microfilament motor activity", "id": "GO:0000146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000146", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "myosin filament", "id": "GO:0032982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032982", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "myofibril", "id": "GO:0030016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030016", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "myosin complex", "id": "GO:0016459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016459", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "muscle myosin complex", "id": "GO:0005859", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005859", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "intercalated disc", "id": "GO:0014704", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014704", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "cytoplasmic ribonucleoprotein granule", "id": "GO:0036464", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036464", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "A band", "id": "GO:0031672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031672", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "myosin II complex", "id": "GO:0016460", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016460", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "muscle contraction", "id": "GO:0006936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006936", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" }, { "name": "sensory perception of sound", "id": "GO:0007605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007605", "evidence": [ { "database": "UniProtKB", "id": "F1SS65", "url": "https://www.uniprot.org/uniprotkb/F1SS65" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1724, "end_pos": 1726, "annotation": "n_glycosylation_sequon" }, { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1896, "end_pos": 1898, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 482, "end_pos": 484, "annotation": "n_glycosylation_sequon" }, { "start_pos": 592, "end_pos": 594, "annotation": "n_glycosylation_sequon" }, { "start_pos": 605, "end_pos": 607, "annotation": "n_glycosylation_sequon" }, { "start_pos": 680, "end_pos": 682, "annotation": "n_glycosylation_sequon" }, { "start_pos": 730, "end_pos": 732, "annotation": "n_glycosylation_sequon" }, { "start_pos": 981, "end_pos": 983, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS65" }, { "id": "PS51844", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51844" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin N-terminal SH3-like", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 82, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SS65", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS65" }, { "id": "PS51456", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51456" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin motor", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 782, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1724, "end_pos": 1726 }, { "start_pos": 172, "end_pos": 174 }, { "start_pos": 1896, "end_pos": 1898 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 482, "end_pos": 484 }, { "start_pos": 592, "end_pos": 594 }, { "start_pos": 605, "end_pos": 607 }, { "start_pos": 680, "end_pos": 682 }, { "start_pos": 730, "end_pos": 732 }, { "start_pos": 981, "end_pos": 983 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS95-1", "uniprot_ac": "F1SS95", "uniprot_id": "F1SS95_PIG", "mass": { "chemical_mass": 143230.0, "monoisotopic_mass": 143230.0 }, "refseq": { "ac": "XP_005663543", "name": "histone-lysine N-methyltransferase SETDB1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663543" }, "gene_names": [ { "name": "SETDB1", "type": "recommended", "evidence": [ { "id": "F1SS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ] }, { "name": "SETDB1", "type": "synonym", "evidence": [ { "id": "XP_005663543", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663543" } ] } ], "protein_names": [ { "name": "Histone-lysine N-methyltransferase SETDB1", "type": "recommended", "evidence": [ { "id": "F1SS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS95/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.366", "type": "synonym", "evidence": [ { "id": "F1SS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS95/entry#names_and_taxonomy" } ] }, { "name": "ERG-associated protein with SET domain", "type": "synonym", "evidence": [ { "id": "F1SS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS95/entry#names_and_taxonomy" } ] }, { "name": "SET domain bifurcated 1", "type": "synonym", "evidence": [ { "id": "F1SS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS95/entry#names_and_taxonomy" } ] }, { "name": "histone-lysine N-methyltransferase SETDB1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005663543", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663543" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SETDB1", "url": "https://www.uniprot.org/uniprotkb/F1SS95", "locus": { "chromosome": "4", "start_pos": 98260375, "end_pos": 98293097, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006645", "url": "https://www.ensembl.org/id/ENSSSCG00000006645" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006645", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006645", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "2.1.1.355", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=2.1.1.355&UniProtAcc=F1SS95", "database": "BRENDA", "categories": [ "Enzyme and Pathway" ] }, { "id": "2.1.1.356", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=2.1.1.356&UniProtAcc=F1SS95", "database": "BRENDA", "categories": [ "Enzyme and Pathway" ] }, { "id": "cd01395", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01395", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10517", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10517", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20382", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20382", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21181", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21181", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157920", "url": "https://www.ncbi.nlm.nih.gov/gene/100157920", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001739", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001739", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003616", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003616", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007728", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007728", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025796", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025796", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040880", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040880", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041292", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041292", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157920", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157920", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SS95", "url": "https://www.orthodb.org/?gene=F1SS95", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46024", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46024", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46024:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46024:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00856", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00856", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05033", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05033", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18300", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18300", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18359", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18359", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3214841", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214841", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843940", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843970", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843970", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005663543", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663543", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "60280", "url": "https://www.rhea-db.org/rhea/60280", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "60288", "url": "https://www.rhea-db.org/rhea/60288", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "64444", "url": "https://www.rhea-db.org/rhea/64444", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BEQ3", "url": "https://www.uniprot.org/uniprotkb/A0A287BEQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BEQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BEQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SDV8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SDV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SDV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2REQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS95-1", "url": "https://www.uniprot.org/uniprotkb/F1SS95-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSLPGCIGLDAAAAAMESEEIAELQQAVVEELGISMEELRQFIDEELEKMDCVQQRKKQLAELETWVIQKESEVAHVDQLFDDASKAVTNCESLVKDFYSKLGLQYRDSSSEDEASRPTEIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLSQMTGELTKDGDLTVGMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDHHPPVDKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKNRFLIFFDDGYASYVTESELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEKKQGGQLRTRPNMGAVRSKGPVVQYTQDLTSTGTQFKPLEPPQPTASPVPPAPAPPGPPLSPQAGDNESLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSETAPVGKPGINQTYRSPLGSTTSAPTPPAPPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRVRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAPCSSDSSGVDLKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSEMPSKDSRPPDLGPPHIPVSPSIPVGSCNPPSSEETPKNKVASWLSCNSVNEGGFADSDSRSSFKTSEGGEGRAGGSRGEAEKASSSGLGFKDEGDIKQAKKEDPDDRSKMSIVTESSRNYGYNPSPVKIEGLRRPPSKTSMHQSRRLLAFAQSNPDDILTLSSSTESEGESGTSRKPTAGQTSATAVDSDDIQTISSGSEGDDFEDKKNMSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMASVEKGESAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL", "length": 1292, "header": "tr|F1SS95-1|F1SS95_PIG Isoform 1 of Histone-lysine N-methyltransferase SETDB1 OS=Sus scrofa OX=9823 GN=SETDB1 PE=4 SV=2 CANONICAL=F1SS95-1" }, "isoforms": [ { "isoform_ac": "A0A287BEQ3-1", "url": "https://www.uniprot.org/uniprotkb/F1SS95/entry#A0A287BEQ3-1", "sequence": { "sequence": "MSSLPGCIGLDAAAAAMESEEIAELQQAVVEELGISMEELRQFIDEELEKMDCVQQRKKQLAELETWVIQKESEVAHVDQLFDDASKAVTNCESLVKDFYSKLGLQYRDSSSEDEASRPTEIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLSQMTGELTKDGDLTVGMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDHHPPVDKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKNRFLIFFDDGYASYVTESELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEKKQGGQLRTRPNMGAVRSKGPVVQYTQDLTSTGTQFKPLEPPQPTASPVPPAPAPPGPPLSPQAGDNESLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSETAPVGKPGINQTYRSPLGSTTSAPTPPAPPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRVRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAPCSSDSSGVDLKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSEMPSKDSRPPDLGPPHIPVSPSIPVGSCNPPSSEETPKNKVASWLSCNSVNEGGFADSDSRSSFKTSEGGEGRAGGSRGEAEKASSSGLGFKDEGDIKQAKKEDPDDRSKMSIVTESSRNYGYNPSPVKIEGLRRPPSKTSMHQSRRLLAFAQSNPDDILTLSSSTESEGESGTSRKPTAGQTSATAVDSDDIQTISSGSEGDDFEDKKNMSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMASVEKGESAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNENSSWDRTYLGLQL", "length": 1238, "header": "tr|A0A287BEQ3-1|F1SS95_PIG Computationally mapped isoform of Histone-lysine N-methyltransferase SETDB1 OS=Sus scrofa OX=9823 GN=SETDB1 PE=4 SV=1 CANONICAL=F1SS95-1" }, "locus": { "chromosome": "4", "start_pos": 98292016, "end_pos": 98261152, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064394.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064394.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055025.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055025.1" } ] } }, { "isoform_ac": "A0A4X1SDV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SS95/entry#A0A4X1SDV8-1", "sequence": { "sequence": "MSSLPGCIGLDAAAAAMESEEIAELQQAVVEELGISMEELRQFIDEELEKMDCVQQRKKQLAELETWVIQKESEVAHVDQLFDDASKAVTNCESLVKDFYSKLGLQYRDSSSEDEASRPTEIIEIPDEDDDVLSIDSAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLSQMTGELTKDGDLTVGMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDHHPPVDKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKNRFLIFFDDGYASYVTESELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEKKQGGQLRTRPNMGAVRSKGPVVQYTQDLTSTGTQFKPLEPPQPTASPVPPAPAPPGPPLSPQAGDNESLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSETAPVGKPGINQTYRSPLGSTTSAPTPPAPPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRVRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAPCSSDSSGVDLKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSEMPSKDSRPPDLGPPHIPVSPSIPVGSCNPPSSEETPKNKVASWLSCNSVNEGGFADSDSRSSFKTSEGGEGRAGGSRGEAEKASSSGLGFKDEGDIKQAKKEDPDDRSKMSIVTESSRNYGYNPSPVKIEGLRRPPSKTSMHQSRRLLAFAQSNPDDILTLSSSTESEGESGTSRKPTAGQTSATAVDSDDIQTISSGSEGDDFEDKKNMSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMASVEKGESAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL", "length": 1277, "header": "tr|A0A4X1SDV8-1|F1SS95_PIG Computationally mapped isoform of Histone-lysine N-methyltransferase SETDB1 OS=Sus scrofa OX=9823 GN=SETDB1 PE=4 SV=1 CANONICAL=F1SS95-1" }, "locus": { "chromosome": "4", "start_pos": 98292016, "end_pos": 98261079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048341.2", "url": "https://www.ensembl.org/id/ENSSSCT00000048341.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056621.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056621.2" } ] } }, { "isoform_ac": "A0A5G2REQ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SS95/entry#A0A5G2REQ4-1", "sequence": { "sequence": "MSSLPGCIGLDAAAAAMESEEIAELQQAVVEELGISMEELRQFIDEELEKMDCVQQRKKQLAELETWVIQKESEVAHVDQLFDDASKAVTNCESLVKDFYSKLGLQYRDSSSEDEASRPTEIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLSQMTGELTKDGDLTVGMRILGKKRTKTWHKGTLIAIQTVGFSFSLMMATLPMLPSLNCIPFAGH", "length": 249, "header": "tr|A0A5G2REQ4-1|F1SS95_PIG Computationally mapped isoform of Histone-lysine N-methyltransferase SETDB1 OS=Sus scrofa OX=9823 GN=SETDB1 PE=4 SV=1 CANONICAL=F1SS95-1" }, "locus": { "chromosome": "4", "start_pos": 98292016, "end_pos": 98277808, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068878.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068878.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073141.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073141.1" } ] } }, { "isoform_ac": "F1SS95-1", "url": "https://www.uniprot.org/uniprotkb/F1SS95/entry#F1SS95-1", "sequence": { "sequence": "MSSLPGCIGLDAAAAAMESEEIAELQQAVVEELGISMEELRQFIDEELEKMDCVQQRKKQLAELETWVIQKESEVAHVDQLFDDASKAVTNCESLVKDFYSKLGLQYRDSSSEDEASRPTEIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDLHKGTLSQMTGELTKDGDLTVGMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDHHPPVDKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKNRFLIFFDDGYASYVTESELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEKKQGGQLRTRPNMGAVRSKGPVVQYTQDLTSTGTQFKPLEPPQPTASPVPPAPAPPGPPLSPQAGDNESLESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSETAPVGKPGINQTYRSPLGSTTSAPTPPAPPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRVRPMRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFCLDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDAPCSSDSSGVDLKDQEDGNSGTEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSEMPSKDSRPPDLGPPHIPVSPSIPVGSCNPPSSEETPKNKVASWLSCNSVNEGGFADSDSRSSFKTSEGGEGRAGGSRGEAEKASSSGLGFKDEGDIKQAKKEDPDDRSKMSIVTESSRNYGYNPSPVKIEGLRRPPSKTSMHQSRRLLAFAQSNPDDILTLSSSTESEGESGTSRKPTAGQTSATAVDSDDIQTISSGSEGDDFEDKKNMSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMASVEKGESAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL", "length": 1292, "header": "tr|F1SS95-1|F1SS95_PIG Isoform 1 of Histone-lysine N-methyltransferase SETDB1 OS=Sus scrofa OX=9823 GN=SETDB1 PE=4 SV=2 CANONICAL=F1SS95-1" }, "locus": { "chromosome": "4", "start_pos": 98292016, "end_pos": 98261079, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007281.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007281.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007086.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007086.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 455, "start_aa": "Thr", "end_pos": 455, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr455", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 542, "start_aa": "Thr", "end_pos": 542, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr542", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2REQ4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2REQ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157920", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157920", "resource": "KEGG Pathway" }, { "id": "R-SSC-3214841", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214841", "resource": "Reactome", "description": "PKMTs methylate histone lysines" }, { "id": "R-SSC-9843940", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "resource": "Reactome", "description": "Regulation of endogenous retroelements by KRAB-ZFP proteins" }, { "id": "R-SSC-9843970", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843970", "resource": "Reactome", "description": "Regulation of endogenous retroelements by the Human Silencing Hub (HUSH) complex" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "histone H3K9 methyltransferase activity", "id": "GO:0046974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046974", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "promoter-specific chromatin binding", "id": "GO:1990841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990841", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "histone H3K9me2 methyltransferase activity", "id": "GO:0140947", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140947", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "DNA methylation-dependent constitutive heterochromatin formation", "id": "GO:0006346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006346", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "negative regulation of gene expression", "id": "GO:0010629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010629", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" }, { "name": "heterochromatin organization", "id": "GO:0070828", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070828", "evidence": [ { "database": "UniProtKB", "id": "F1SS95", "url": "https://www.uniprot.org/uniprotkb/F1SS95" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1151, "end_pos": 1153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1224, "end_pos": 1226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" }, { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "60280", "name": "", "equation": "L-lysyl(9)-[histone H3] + S-adenosyl-L-methionine = N(6)-methyl-L-lysyl(9)-[histone H3] + S-adenosyl-L-homocysteine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "60280", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60280" } ] }, { "id": "60288", "name": "", "equation": "N(6),N(6)-dimethyl-L-lysyl(9)-[histone H3] + S-adenosyl-L-methionine = N(6),N(6),N(6)-trimethyl-L-lysyl(9)-[histone H3] + S-adenosyl-L-homocysteine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "60288", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60288" } ] }, { "id": "64444", "name": "", "equation": "L-lysyl(9)-[histone H3] + 2 S-adenosyl-L-methionine = N(6),N(6)-dimethyl-L-lysyl(9)-[histone H3] + 2 S-adenosyl-L-homocysteine + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "64444", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/64444" } ] }, { "id": "R-SSC-4827382", "name": "SUV39H1 (KMT1A), SUV39H2 (KTM1B), SETDB1 (KMT1E), SETDB2 (KMT1F) methylate dimethyl-lysine-10 of histone H3 (H3K9)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-4827382", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4827382" } ] }, { "id": "R-SSC-5159250", "name": "ATF7IP binds SETDB1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5159250", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5159250" } ] }, { "id": "R-SSC-9842833", "name": "SETDB1 in ATF7IP:SETDB1:SUMO2-6K-TRIM28:KRAB-ZFP:retroelement trimethylates lysine-9 of histone H3 in nucleosomes", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9842833", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9842833" } ] }, { "id": "R-SSC-9842839", "name": "ATF7IP:SETDB1 binds SUMO2-6K-TRIM28:KRAB-ZFP:retroelement chromatin", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9842839", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9842839" } ] }, { "id": "R-SSC-9844006", "name": "SETDB1 in me3-K16-ATF7IP:SETDB1:MORC2:HUSH complex:L1 RNA trimethylates lysine-9 of histone H3 (H3K9me3)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9844006", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9844006" } ] }, { "id": "R-SSC-9844057", "name": "SETDB1 in me3-K16-ATF7IP:SETDB1:MORC2:HUSH complex:L1HS,L1PA2,3 heterochromatin trimethylates lysine-9 of histone H3 in adjacent nucleosome", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9844057", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9844057" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS95" }, { "id": "PS50982", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50982" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MBD", "eco_id": "ECO_0000259", "start_pos": 595, "end_pos": 666, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS95" }, { "id": "PS50868", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50868" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Post-SET", "eco_id": "ECO_0000259", "start_pos": 1276, "end_pos": 1292, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS95" }, { "id": "PS50867", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50867" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pre-SET", "eco_id": "ECO_0000259", "start_pos": 728, "end_pos": 801, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SS95", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS95" }, { "id": "PS50280", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50280" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SET", "eco_id": "ECO_0000259", "start_pos": 804, "end_pos": 1267, "start_aa": "Val", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 455, 542 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1151, "end_pos": 1153 }, { "start_pos": 1224, "end_pos": 1226 }, { "start_pos": 477, "end_pos": 479 }, { "start_pos": 527, "end_pos": 529 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5G3-1", "uniprot_ac": "I3L5G3", "uniprot_id": "I3L5G3_PIG", "mass": { "chemical_mass": 44868.0, "monoisotopic_mass": 44868.0 }, "refseq": { "ac": "XP_020920131", "name": "dimethyladenosine transferase 2, mitochondrial isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920131" }, "gene_names": [ { "name": "TFB2M", "type": "recommended", "evidence": [ { "id": "I3L5G3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ] }, { "name": "TFB2M", "type": "synonym", "evidence": [ { "id": "XP_020920131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920131" } ] } ], "protein_names": [ { "name": "rRNA adenine N(6)-methyltransferase", "type": "recommended", "evidence": [ { "id": "I3L5G3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5G3/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.-", "type": "synonym", "evidence": [ { "id": "I3L5G3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5G3/entry#names_and_taxonomy" } ] }, { "name": "dimethyladenosine transferase 2, mitochondrial isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020920131", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920131" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TFB2M", "url": "https://www.uniprot.org/uniprotkb/I3L5G3", "locus": { "chromosome": "10", "start_pos": 19028820, "end_pos": 19046327, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023775", "url": "https://www.ensembl.org/id/ENSSSCG00000023775" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023775", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023775", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102161798", "url": "https://www.ncbi.nlm.nih.gov/gene/102161798", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001737", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001737", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102161798", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102161798", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IFEVPWT", "url": "https://omabrowser.org/oma/group/IFEVPWT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L5G3", "url": "https://www.orthodb.org/?gene=I3L5G3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11727", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11727", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11727:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11727:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00398", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00398", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-163282", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163282", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020920131", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020920131", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "58728", "url": "https://www.rhea-db.org/rhea/58728", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BHB8", "url": "https://www.uniprot.org/uniprotkb/A0A287BHB8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHB8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHB8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5G3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5G3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWVPWAGLPPRLTLSALTVPGRFCTLRSGAARRKDVPAGHRRALSDFQPKLVPCVGFGKSRVYKHNSEPKRYITNPRVAENLVRILRRKRKSGQLFLECNPGPGFLTRALLESGARVIACESDKAFIPQLEDLGQKLGGKLKVVYCDFFKLDPRGHGALTPPIMTAETLFRNLGIGPNPWSKGAAFKVVGVLPTRNERNTLWKLLHDLYSCTSIYEYGRVEVNMFVTEKECRKIMANPQNPNLYQALSVLCQLACGIKVLHTEPCSSFRTFIQNGQLEKKQHRESEQNLCFIQLSPHRNLFARTLTPFNYDVFFHMVRQCFMKRNAMLVDHLRSLSPVDALHIMNQMRKKHSMKIVDMYPEDFQRLFEIIECSKDGACRWLYDDFMEDTLT", "length": 391, "header": "tr|I3L5G3-1|I3L5G3_PIG Isoform 1 of rRNA adenine N(6)-methyltransferase OS=Sus scrofa OX=9823 GN=TFB2M PE=3 SV=2 CANONICAL=I3L5G3-1" }, "isoforms": [ { "isoform_ac": "A0A287BHB8-1", "url": "https://www.uniprot.org/uniprotkb/I3L5G3/entry#A0A287BHB8-1", "sequence": { "sequence": "MWVPWAGLPPRLTLSALTVPGRFCTLRSGAARRKDVPAGHRRALSDFQPKLVPCVGFGKSRVYKHNSEPKRYITNPRVAENLVRILRRKRKSGQLFLECNPGPGFLTRALLESGARVIACESDKAFIPQLEDLGQKLGGKLKVVYCDFFKLDPRGHGALTPPIMTAETLFRNLGIGPNPWSKGAAFKVVGVLPTRNERNTLWKLLHDLYSCTSIYEYGRVEVNMFVTEKECREPCSSFRTFIQNGQLEKKQHRESEQNLCFIQLSPHRNLFARTLTPFNYDVFFHMVRQCFMKRNAMLVDHLRSLSPVDALHIMNQMRKKHSMKIVDMYPEDFQRLFEIIECSKDGACRWLYDDFMEDTLT", "length": 361, "header": "tr|A0A287BHB8-1|I3L5G3_PIG Computationally mapped isoform of rRNA adenine N(6)-methyltransferase OS=Sus scrofa OX=9823 GN=TFB2M PE=3 SV=1 CANONICAL=I3L5G3-1" }, "locus": { "chromosome": "10", "start_pos": 19046191, "end_pos": 19029645, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037887.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037887.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055985.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055985.1" } ] } }, { "isoform_ac": "I3L5G3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5G3/entry#I3L5G3-1", "sequence": { "sequence": "MWVPWAGLPPRLTLSALTVPGRFCTLRSGAARRKDVPAGHRRALSDFQPKLVPCVGFGKSRVYKHNSEPKRYITNPRVAENLVRILRRKRKSGQLFLECNPGPGFLTRALLESGARVIACESDKAFIPQLEDLGQKLGGKLKVVYCDFFKLDPRGHGALTPPIMTAETLFRNLGIGPNPWSKGAAFKVVGVLPTRNERNTLWKLLHDLYSCTSIYEYGRVEVNMFVTEKECRKIMANPQNPNLYQALSVLCQLACGIKVLHTEPCSSFRTFIQNGQLEKKQHRESEQNLCFIQLSPHRNLFARTLTPFNYDVFFHMVRQCFMKRNAMLVDHLRSLSPVDALHIMNQMRKKHSMKIVDMYPEDFQRLFEIIECSKDGACRWLYDDFMEDTLT", "length": 391, "header": "tr|I3L5G3-1|I3L5G3_PIG Isoform 1 of rRNA adenine N(6)-methyltransferase OS=Sus scrofa OX=9823 GN=TFB2M PE=3 SV=2 CANONICAL=I3L5G3-1" }, "locus": { "chromosome": "10", "start_pos": 19046191, "end_pos": 19029645, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032587.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032587.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019262.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019262.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BHB8", "url": "https://www.uniprot.org/uniprotkb/A0A287BHB8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102161798", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102161798", "resource": "KEGG Pathway" }, { "id": "R-SSC-163282", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163282", "resource": "Reactome", "description": "Mitochondrial transcription initiation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LEF8-1", "protein_name": "rRNA adenine N(6)-methyltransferase", "gene_name": "Tfb2m", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWGPAMGLPPRLALSVFAGPARSCVLGSRTAARKDWQAKSRRGFSDFYMQPLFDPELEESPFFAPKGRSEPTCYVACKKLAKNLVRNLLGYHNPSRQLLLECNPGPGILTEALLRAGARVIAFESEKTFIPHLKSLRMHLDGLLQVVHSDFFKIDPRHQEVVKPEYNSRIIFKDLGINPVPWSAGVPIKVFGILPTKLERRILWKTLFDLYSCESIYRYGRIELNLFVTEKEFQRLIATPKRPDLYQVLSVLWQVACDIKFIHMEPWSSFSMHNENGSSENSKLGESLKSMKQNLYFIQLTPRRTLFTEHLSPLNYDIFFHMVKHCFGKRSSPIIQHLRSLSTVEPIEILRKVRIKPGETILRMYPHDFKRLFEMIERSEDCVFKWVYDESLEDIVL", "length": 397 }, "evidence": [ { "id": "I3L5G3", "url": "https://omabrowser.org/oma/group/I3L5G3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1NSS3-1", "protein_name": "rRNA adenine N(6)-methyltransferase", "gene_name": "TFB2M", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRAGRALPGAAGCGRLLAAGLRPLLGGPGPCWATVRRAAGRWPSPGLRVPQAAEAEQLVLRAGGPWGRFIACPQLARTVQRCLQAGSGPQPVVLECAPGPGVLTRTLLNAGVRVVALESHPAFLSKLQSLENSLDGQLKVIYGDFFRLDPLVTGAVKPPAVCSDKLFEAMGIAAVPWRADVPVKIFGIFPQRKERNTLWRLLFILYECSSIYRYGRVELNIFISEKEYKVLTAKPGELRIYQALSVLWQAGCDIQLLHMEPWSSFLTNMKNGRLAIPKSTRLPNDHLCLVRLTPQQNLFTGGLKPANSATFIFMVKQCLTKPRSKLIDRLNSWSLDNADKLLKALEIPEYVETGNVYPEDYKRLFCALQNSSVFTESWFHDEVLESIRNINL", "length": 392 }, "evidence": [ { "id": "I3L5G3", "url": "https://omabrowser.org/oma/group/I3L5G3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q32LD4-1", "protein_name": "Dimethyladenosine transferase 2, mitochondrial", "gene_name": "TFB2M", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWVPGAGIPSRLTLSAFTRAARFCVLNSGVARWKDVPAENCRGLYDFHTQLKPDVEFGKLSSRLYKSRSETKRYVTSPRVAETVVRVLRGKRKAGQLILECNPGPGVLTRALLESGARVIALESDKNFIPELKSLGNSVNGRLEVIYCDFFKLDPRNHGMVTPPVMTSDMLFQYLGVKAHPWKKGFPLKVVGILPAKTERNTLWKILHDLYSCSSVYKYGRAELNLFISEKECRKLTANPQTPALYQSLSVLGQTACGIKVLCTEPSSLFDTYAIKGELEKQRHRESLEQNLCFVQLTPHRNLFTGTLTPFNYDVFFHMLRQCFMKRNAKLIDHLPSLSPIDAVHILKQIKKKKDVRVVDMYPKDFLRLFETIECSKDDTCKWLYDEFMEDALS", "length": 394 }, "evidence": [ { "id": "I3L5G3", "url": "https://omabrowser.org/oma/group/I3L5G3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3TL26-1", "protein_name": "Dimethyladenosine transferase 2, mitochondrial", "gene_name": "Tfb2m", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGPAMRLPPRIALSALARGPSCILGSGAATRKDWQTRNRRGFSDFNIEPLPDSDLEESSPWTSRNRSEPTRHIACKKAARNLVRDLLEHQNPSRQIILECNPGPGILTGALLKAGARVVAFESEKTFIPHLEPLQRNMDGELQVVHCDFFKMDPRYQEVVRPDVSSQAIFQNLGIKAVPWSAGVPIKVFGILPYKHERRILWKILFDLYSCESIYRYGRVELNMFVSEKEFRKLIATPKRPDLYQVMAVLWQVACDVKFLHMEPWSSFSVHTENGHLEKSKHGESVNLLKQNLYLVRMTPRRTLFTENLSPLNYDIFFHLVKHCFGKRNAPIIRHLRSLSTVDPINILRQIRKNPGDTAARMYPHDFKKLFETIEQSEDSVFKWIYDYCPEDMEF", "length": 396 }, "evidence": [ { "id": "I3L5G3", "url": "https://omabrowser.org/oma/group/I3L5G3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5U2T7-1", "protein_name": "Dimethyladenosine transferase 2, mitochondrial", "gene_name": "Tfb2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRGLAMRLPPRLALSVLAGRGPSCILGSGAATRKDWQERNRRSFSDLYTQPLPDCDFEESSSWTHKSRSEPTRHIACKKSARNLVRDLLEHQNPSHQLILECNPGPGILTGALLKAGARVVAFESEKMFIPHLESLRKNADGELQVVHCDFFKIDPRYQELVRPDVNSHTIFQNLGIKAVPWSAGVPIKVFGILPNKHERRLLWKILFDLYSCESIYRYGRVELNMFISEKEFRKLIATPKRPDLYQVLGVLWQVACEIKFLHMEPWSSFSVHAENGHLEKSKHSESLNLLKQNLYLVRMTPRRTLFTENLSPLNYDMFFHLVKHCFGKRNAPIIHHLRSLSTVDPINILRQIRKRPGDTAAKMYPHDFKRLFETIERSEDSVFKWIYDYCSDDSEL", "length": 397 }, "evidence": [ { "id": "I3L5G3", "url": "https://omabrowser.org/oma/group/I3L5G3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9H5Q4-1", "protein_name": "Dimethyladenosine transferase 2, mitochondrial", "gene_name": "TFB2M", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWIPVVGLPRRLRLSALAGAGRFCILGSEAATRKHLPARNHCGLSDSSPQLWPEPDFRNPPRKASKASLDFKRYVTDRRLAETLAQIYLGKPSRPPHLLLECNPGPGILTQALLEAGAKVVALESDKTFIPHLESLGKNLDGKLRVIHCDFFKLDPRSGGVIKPPAMSSRGLFKNLGIEAVPWTADIPLKVVGMFPSRGEKRALWKLAYDLYSCTSIYKFGRIEVNMFIGEKEFQKLMADPGNPDLYHVLSVIWQLACEIKVLHMEPWSSFDIYTRKGPLENPKRRELLDQLQQKLYLIQMIPRQNLFTKNLTPMNYNIFFHLLKHCFGRRSATVIDHLRSLTPLDARDILMQIGKQEDEKVVNMHPQDFKTLFETIERSKDCAYKWLYDETLEDR", "length": 396 }, "evidence": [ { "id": "I3L5G3", "url": "https://omabrowser.org/oma/group/I3L5G3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "pmid": "" }, { "name": "rRNA (adenine-N6,N6-)-dimethyltransferase activity", "id": "GO:0000179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000179", "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "pmid": "" }, { "name": "mitochondrial transcription factor activity", "id": "GO:0034246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034246", "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "pmid": "" }, { "name": "mitochondrial nucleoid", "id": "GO:0042645", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042645", "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "pmid": "" }, { "name": "rRNA methylation", "id": "GO:0031167", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031167", "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "pmid": "" }, { "name": "transcription initiation at mitochondrial promoter", "id": "GO:0006391", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006391", "evidence": [ { "database": "UniProtKB", "id": "I3L5G3", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "58728", "name": "", "equation": "adenosine in rRNA + S-adenosyl-L-methionine = N(6)-methyladenosine in rRNA + S-adenosyl-L-homocysteine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "58728", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/58728" } ] }, { "id": "R-SSC-163296", "name": "Association of TFAM:mt promoter complex with POLRMT:TFB2M", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-163296", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163296" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5G3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5G3" }, { "id": "SM00650", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00650" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ribosomal RNA adenine methylase transferase N-terminal", "eco_id": "ECO_0000259", "start_pos": 78, "end_pos": 275, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L574-1", "uniprot_ac": "I3L574", "uniprot_id": "I3L574_PIG", "mass": { "chemical_mass": 21086.0, "monoisotopic_mass": 21086.0 }, "refseq": { "ac": "XP_003133816", "name": "NEDD8-conjugating enzyme UBE2F isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133816" }, "gene_names": [ { "name": "UBE2F", "type": "recommended", "evidence": [ { "id": "I3L574", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L574" } ] }, { "name": "UBE2F", "type": "synonym", "evidence": [ { "id": "XP_003133816", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133816" } ] } ], "protein_names": [ { "name": "E2 NEDD8-conjugating enzyme", "type": "recommended", "evidence": [ { "id": "I3L574", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L574/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.34", "type": "synonym", "evidence": [ { "id": "I3L574", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L574/entry#names_and_taxonomy" } ] }, { "name": "NEDD8-conjugating enzyme UBE2F isoform X4", "type": "synonym", "evidence": [ { "id": "XP_003133816", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133816" } ] } ], "function": [ { "annotation": "Accepts the ubiquitin-like protein NEDD8 from the UBA3-NAE1 E1 complex and catalyzes its covalent attachment to other proteins. Together with the E3 ubiquitin ligase RNF7/RBX2, specifically neddylates cullin-5 (CUL5). Does not neddylate CUL1, CUL2, CUL3, CUL4A or CUL4B. Mediates neddylation of the CUL9-RBX1 complex.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R0V6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0V6#function" }, { "database": "UniProtKB", "id": "ARBA00060254", "url": "https://www.uniprot.org/uniprotkb/ARBA00060254#function" }, { "database": "UniProtKB", "id": "I3L574", "url": "https://www.uniprot.org/uniprotkb/I3L574#function" }, { "database": "UniProtKB", "id": "A0A5G2RF73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF73#function" }, { "database": "UniProtKB", "id": "A0A287BHH3", "url": "https://www.uniprot.org/uniprotkb/A0A287BHH3#function" }, { "database": "UniProtKB", "id": "A0A5G2Q7M6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L574", "url": "https://www.uniprot.org/uniprotkb/I3L574" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBE2F", "url": "https://www.uniprot.org/uniprotkb/I3L574", "locus": {} } ], "crossref": [ { "id": "I3L574", "url": "https://alphafold.ebi.ac.uk/entry/I3L574", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027723", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027723", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23794", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23794", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517862", "url": "https://www.ncbi.nlm.nih.gov/gene/100517862", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517862", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517862", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VMQYAKR", "url": "https://omabrowser.org/oma/group/VMQYAKR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2Q7M6", "url": "https://www.orthodb.org/?gene=A0A5G2Q7M6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3L574", "url": "https://www.orthodb.org/?gene=I3L574", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24067", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24067", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24068", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24068", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003133816", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133816", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BHH3", "url": "https://www.uniprot.org/uniprotkb/A0A287BHH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BHH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BHH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7M6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7M6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0V6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R0V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R0V6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RF73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RF73-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L574", "url": "https://www.uniprot.org/uniprotkb/I3L574", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L574-1", "url": "https://www.uniprot.org/uniprotkb/I3L574-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTLASKLKRDDGLKGSRASPAASDSTRRVSVRDRLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRSKVEDYIKRFAR", "length": 185, "header": "tr|I3L574-1|I3L574_PIG Isoform 1 of E2 NEDD8-conjugating enzyme OS=Sus scrofa OX=9823 GN=UBE2F PE=3 SV=3 CANONICAL=I3L574-1" }, "isoforms": [ { "isoform_ac": "A0A287BHH3-1", "url": "https://www.uniprot.org/uniprotkb/I3L574/entry#A0A287BHH3-1", "sequence": { "sequence": "MLTLASKLKRDDGLKGSRASPAASDSTRRVSVRDRLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTEDFRSKVEDYIKRFAR", "length": 164, "header": "tr|A0A287BHH3-1|I3L574_PIG Computationally mapped isoform of E2 NEDD8-conjugating enzyme OS=Sus scrofa OX=9823 GN=UBE2F PE=3 SV=1 CANONICAL=I3L574-1" }, "locus": { "chromosome": "15", "start_pos": 137619889, "end_pos": 137571622, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046934.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046934.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055513.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055513.2" } ] } }, { "isoform_ac": "A0A5G2Q7M6-1", "url": "https://www.uniprot.org/uniprotkb/I3L574/entry#A0A5G2Q7M6-1", "sequence": { "sequence": "MLTLASKLKRDDGLKGSRASPAASDSTRRVSVRDRLLVKDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRSKVEDYIKRFAR", "length": 153, "header": "tr|A0A5G2Q7M6-1|I3L574_PIG Computationally mapped isoform of E2 NEDD8-conjugating enzyme OS=Sus scrofa OX=9823 GN=UBE2F PE=3 SV=1 CANONICAL=I3L574-1" }, "locus": { "chromosome": "15", "start_pos": 137619889, "end_pos": 137571622, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074886.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074886.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059825.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059825.1" } ] } }, { "isoform_ac": "A0A5G2R0V6-1", "url": "https://www.uniprot.org/uniprotkb/I3L574/entry#A0A5G2R0V6-1", "sequence": { "sequence": "MLTLASKLKRDDGLKGSRASPAASDSTRRVSVRDRLLVKEVAELEANLPYEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRSKVEDYIKRFAR", "length": 163, "header": "tr|A0A5G2R0V6-1|I3L574_PIG Computationally mapped isoform of E2 NEDD8-conjugating enzyme OS=Sus scrofa OX=9823 GN=UBE2F PE=3 SV=1 CANONICAL=I3L574-1" }, "locus": { "chromosome": "15", "start_pos": 137619889, "end_pos": 137571622, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083644.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083644.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064131.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064131.1" } ] } }, { "isoform_ac": "A0A5G2RF73-1", "url": "https://www.uniprot.org/uniprotkb/I3L574/entry#A0A5G2RF73-1", "sequence": { "sequence": "MVLGAGPASPVSGCPEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRSKVEDYIKRFAR", "length": 161, "header": "tr|A0A5G2RF73-1|I3L574_PIG Computationally mapped isoform of E2 NEDD8-conjugating enzyme OS=Sus scrofa OX=9823 GN=UBE2F PE=3 SV=1 CANONICAL=I3L574-1" }, "locus": { "chromosome": "15", "start_pos": 137619889, "end_pos": 137567354, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105598.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105598.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077371.1", "url": "https://www.ensembl.org/id/ENSSSCP00000077371.1" } ] } }, { "isoform_ac": "I3L574-1", "url": "https://www.uniprot.org/uniprotkb/I3L574/entry#I3L574-1", "sequence": { "sequence": "MLTLASKLKRDDGLKGSRASPAASDSTRRVSVRDRLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRSKVEDYIKRFAR", "length": 185, "header": "tr|I3L574-1|I3L574_PIG Isoform 1 of E2 NEDD8-conjugating enzyme OS=Sus scrofa OX=9823 GN=UBE2F PE=3 SV=3 CANONICAL=I3L574-1" }, "locus": { "chromosome": "15", "start_pos": 137619889, "end_pos": 137571622, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025350.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025350.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019173.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019173.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RF73", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RF73" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517862", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517862", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3I238-1", "protein_name": "E2 NEDD8-conjugating enzyme", "gene_name": "Ube2f", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLTLASKLKRDDGLKGSRTSASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPRVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYAR", "length": 185 }, "evidence": [ { "id": "I3L574", "url": "https://omabrowser.org/oma/group/I3L574/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q1RMW1-1", "protein_name": "NEDD8-conjugating enzyme UBE2F", "gene_name": "UBE2F", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLTLASKLKRDDGLKGSRASATASDSTRRVSVRDRLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYAR", "length": 185 }, "evidence": [ { "id": "I3L574", "url": "https://omabrowser.org/oma/group/I3L574/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5U203-1", "protein_name": "NEDD8-conjugating enzyme UBE2F", "gene_name": "Ube2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLTLASKLKRDDGLKGSRASASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYAR", "length": 185 }, "evidence": [ { "id": "I3L574", "url": "https://omabrowser.org/oma/group/I3L574/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NY82-1", "protein_name": "NEDD8-conjugating enzyme UBE2F", "gene_name": "ube2f", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLTLASKLKREEGVRAGRTPAGSNDAAHRVSIRDRLLIKEVAELEANLPSTCKVTFPDENKLCHFQLAISPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIKNYAR", "length": 185 }, "evidence": [ { "id": "I3L574", "url": "https://omabrowser.org/oma/group/I3L574/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q969M7-1", "protein_name": "NEDD8-conjugating enzyme UBE2F", "gene_name": "UBE2F", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTLASKLKRDDGLKGSRTAATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR", "length": 185 }, "evidence": [ { "id": "I3L574", "url": "https://omabrowser.org/oma/group/I3L574/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CY34-1", "protein_name": "NEDD8-conjugating enzyme UBE2F", "gene_name": "Ube2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLTLASKLKRDDGLKGSRTSASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYAR", "length": 185 }, "evidence": [ { "id": "I3L574", "url": "https://omabrowser.org/oma/group/I3L574/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "NEDD8 conjugating enzyme activity", "id": "GO:0061654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061654", "evidence": [ { "database": "UniProtKB", "id": "I3L574", "url": "https://www.uniprot.org/uniprotkb/I3L574" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "I3L574", "url": "https://www.uniprot.org/uniprotkb/I3L574" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein neddylation", "id": "GO:0045116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045116", "evidence": [ { "database": "UniProtKB", "id": "I3L574", "url": "https://www.uniprot.org/uniprotkb/I3L574" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L574-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 185, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L574-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L574" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L574", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L574" }, { "id": "PS50127", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50127" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBC core", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 185, "start_aa": "Val", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5Z8-1", "uniprot_ac": "I3L5Z8", "uniprot_id": "I3L5Z8_PIG", "mass": { "chemical_mass": 104176.0, "monoisotopic_mass": 104176.0 }, "refseq": {}, "gene_names": [ { "name": "MSH4", "type": "recommended", "evidence": [ { "id": "I3L5Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ] } ], "protein_names": [ { "name": "MutS protein homolog 4", "type": "recommended", "evidence": [ { "id": "I3L5Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C-terminal sequence -XXCC, -XCXC and -CCXX.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BJ15", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ15#function" }, { "database": "UniProtKB", "id": "RU365076", "url": "https://www.uniprot.org/uniprotkb/RU365076#function" }, { "database": "UniProtKB", "id": "ARBA00094457", "url": "https://www.uniprot.org/uniprotkb/ARBA00094457#function" }, { "database": "UniProtKB", "id": "F1S9R0", "url": "https://www.uniprot.org/uniprotkb/F1S9R0#function" } ] }, { "annotation": "Involved in meiotic recombination. Required for reciprocal recombination and proper segregation of homologous chromosomes at meiosis.", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8#function" }, { "database": "UniProtKB", "id": "ARBA00056984", "url": "https://www.uniprot.org/uniprotkb/ARBA00056984#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MSH4", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8", "locus": { "chromosome": "6", "start_pos": 137410691, "end_pos": 137534233, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003775", "url": "https://www.ensembl.org/id/ENSSSCG00000003775" } ] } } ], "crossref": [ { "id": "I3L5Z8", "url": "https://alphafold.ebi.ac.uk/entry/I3L5Z8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003775", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003775", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02894", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02894", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03243", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03243", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000432", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000432", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007861", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007861", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008930", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008930", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036678", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036678", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045076", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045076", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045089", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045089", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:733698", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:733698", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VKRCQCP", "url": "https://omabrowser.org/oma/group/VKRCQCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S9R0", "url": "https://www.orthodb.org/?gene=F1S9R0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11361", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11361", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11361:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11361:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11774", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11774", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11774:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11774:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00488", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00488", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05190", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05190", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05192", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05192", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "21240", "url": "https://www.rhea-db.org/rhea/21240", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BJ15", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BJ15-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BJ15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QWS7", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QWS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0QWS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QWS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLD1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLD1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9R0", "url": "https://www.uniprot.org/uniprotkb/F1S9R0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S9R0-1", "url": "https://www.uniprot.org/uniprotkb/F1S9R0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5Z8-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRPESSPASLPVPGDSSLSVEVRPQVPRCSLGLQETPQSGPSAQAASVSSRPDTSGAAGDRSSSSSCPRAPSALPAQGSYCKSKRSYAENTFASDFTLGTSSSSARGSTCPQIVKTPLSAGNHQRSGYKSWTPQMEYSATSSSAVSAHSPSVVVAVVEGRGLARGEIGMASIDLKSPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCTAEFSTVLMEVQSYYCLAAVAALLKYIEFIQNSLYAPKSLKICFQGSEQTAMIDSSSAQNLELLINNQDSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVIARFLDTEQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVDPLKITLKNCNTPLLRAYYGSLEDKRFGIILDKIKTVINDDARYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYSLPLRTSFSSARGFFIQMTTDCTALFNDKLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTLSDYVRPEFTDTLAIKQGWHPILEKISVEKPVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSIVLDAKEITTQITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRTYLSNLKRKYEADFPRAEQVSGKTEE", "length": 932, "header": "tr|I3L5Z8-1|I3L5Z8_PIG Isoform 1 of MutS protein homolog 4 OS=Sus scrofa OX=9823 GN=MSH4 PE=3 SV=4 CANONICAL=I3L5Z8-1" }, "isoforms": [ { "isoform_ac": "A0A287BJ15-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8/entry#A0A287BJ15-1", "sequence": { "sequence": "GTPQKDVIIKSDAPDTLFLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPEEVLRRVNVQPELVHTVKAKDLMQKTHLPQILLLVQAHPLHEVVPVLK", "length": 363, "header": "tr|A0A287BJ15-1|I3L5Z8_PIG Computationally mapped isoform of MutS protein homolog 4 OS=Sus scrofa OX=9823 GN=MSH4 PE=3 SV=2 CANONICAL=I3L5Z8-1" }, "locus": { "chromosome": "6", "start_pos": 137532737, "end_pos": 137520418, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041771.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041771.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056598.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056598.2" } ] } }, { "isoform_ac": "A0A8D0QWS7-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8/entry#A0A8D0QWS7-1", "sequence": { "sequence": "MGTPQKDVIIKSDAPDTLFLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVQSLQKEDGSFAGDIWGPTKQLV", "length": 145, "header": "tr|A0A8D0QWS7-1|I3L5Z8_PIG Computationally mapped isoform of MutS protein homolog 4 OS=Sus scrofa OX=9823 GN=MSH4 PE=3 SV=1 CANONICAL=I3L5Z8-1" }, "locus": { "chromosome": "6", "start_pos": 137534114, "end_pos": 137530375, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041063.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041063.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054860.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054860.3" } ] } }, { "isoform_ac": "A0A8W4FLD1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8/entry#A0A8W4FLD1-1", "sequence": { "sequence": "GTPQKDVIIKSDAPDTLFLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVQSLQKEDGSFAGDIWGNVFNSLHPKYQCK", "length": 151, "header": "tr|A0A8W4FLD1-1|I3L5Z8_PIG Computationally mapped isoform of MutS protein homolog 4 OS=Sus scrofa OX=9823 GN=MSH4 PE=3 SV=1 CANONICAL=I3L5Z8-1" }, "locus": { "chromosome": "6", "start_pos": 137532737, "end_pos": 137530513, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100487.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100487.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079110.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079110.1" } ] } }, { "isoform_ac": "F1S9R0-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8/entry#F1S9R0-1", "sequence": { "sequence": "MGTPQKDVIIKSDAPDTLFLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPEEVLRRVNVQPELVS", "length": 331, "header": "tr|F1S9R0-1|I3L5Z8_PIG Computationally mapped isoform of MutS protein homolog 4 OS=Sus scrofa OX=9823 GN=MSH4 PE=3 SV=2 CANONICAL=I3L5Z8-1" }, "locus": { "chromosome": "6", "start_pos": 137534114, "end_pos": 137525465, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004178.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004178.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004084.2", "url": "https://www.ensembl.org/id/ENSSSCP00000004084.2" } ] } }, { "isoform_ac": "I3L5Z8-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8/entry#I3L5Z8-1", "sequence": { "sequence": "MLRPESSPASLPVPGDSSLSVEVRPQVPRCSLGLQETPQSGPSAQAASVSSRPDTSGAAGDRSSSSSCPRAPSALPAQGSYCKSKRSYAENTFASDFTLGTSSSSARGSTCPQIVKTPLSAGNHQRSGYKSWTPQMEYSATSSSAVSAHSPSVVVAVVEGRGLARGEIGMASIDLKSPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCTAEFSTVLMEVQSYYCLAAVAALLKYIEFIQNSLYAPKSLKICFQGSEQTAMIDSSSAQNLELLINNQDSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFGLQSVIARFLDTEQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVDPLKITLKNCNTPLLRAYYGSLEDKRFGIILDKIKTVINDDARYMKGCLNMRTQKCYAVRSNINEFLDIARRTYTEIVDDIAGMISQLAEKYSLPLRTSFSSARGFFIQMTTDCTALFNDKLPSEFIKISKVKNSYSFTSTDLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTLSDYVRPEFTDTLAIKQGWHPILEKISVEKPVANNTYITEGSNFVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLSLKAFTLFATHFLELCHIDVLYPNVENMYFEVQHVKNTSRNKEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSIVLDAKEITTQITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRTYLSNLKRKYEADFPRAEQVSGKTEE", "length": 932, "header": "tr|I3L5Z8-1|I3L5Z8_PIG Isoform 1 of MutS protein homolog 4 OS=Sus scrofa OX=9823 GN=MSH4 PE=3 SV=4 CANONICAL=I3L5Z8-1" }, "locus": { "chromosome": "6", "start_pos": 137523554, "end_pos": 137410922, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023892.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023892.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019449.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019449.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0QWS7", "url": "https://www.uniprot.org/uniprotkb/A0A8D0QWS7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:733698", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:733698", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B0G172-1", "protein_name": "Probable geranylgeranyl transferase type-2 subunit beta", "gene_name": "rabggtb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTDNINKESTTTTTTIDHTTNLLIDKHVEYIVKLGSKKDSFEYWVTEHIRMNGMYWGLSSLYLLKSLDKLDKNEVIQWLLSCQKSNGGFGGNTSHDDHLLSTLSAVQILIQYDALDKIDINSVVDYVVKLQREDGSFVGDQWGEVDTRFSYAAIMCLSLLKSLDKINCEKAVEYILSCQNFDGGFGSIPGAESHAGQIFTCVGALSILNEINKIDIDKLGWWLSERQLPNGGLNGRPEKSSDVCYSWWVLSALSAIDRLHWIDNDKLKSYILKCQDNETGGIADKPGDIPDVFHTFFGICGLSLMGYFKDQIESIDPVYALGTKTLQKLGLNLPWNKNL", "length": 339 }, "evidence": [ { "id": "I3L5Z8", "url": "https://omabrowser.org/oma/group/I3L5Z8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "F1P4E5-1", "protein_name": "Geranylgeranyl transferase type-2 subunit beta", "gene_name": "RABGGTB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGTPQKDVVIKPDAPSTLLSEKHADYIASYGTKKDDYEYCMSEYLRMSGVYWGLTAMDLMGQLHRMNKEEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILILYESLHVVDVNKIVEYVQSLQKEDGSFAGDKWGEIDTRFSFCAAATLALLGKLDAIDVGKAVEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITDQLHQINVDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKMIGRLHWIDREKLRCFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKAVNPVFCMPEDVLQRINVQPELVS", "length": 331 }, "evidence": [ { "id": "I3L5Z8", "url": "https://omabrowser.org/oma/group/I3L5Z8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P20133-1", "protein_name": "Geranylgeranyl transferase type-2 subunit beta", "gene_name": "BET2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSGSLTLLKEKHIRYIESLDTKKHNFEYWLTEHLRLNGIYWGLTALCVLDSPETFVKEEVISFVLSCWDDKYGAFAPFPRHDAHLLTTLSAVQILATYDALDVLGKDRKVRLISFIRGNQLEDGSFQGDRFGEVDTRFVYTALSALSILGELTSEVVDPAVDFVLKCYNFDGGFGLCPNAESHAAQAFTCLGALAIANKLDMLSDDQLEEIGWWLCERQLPEGGLNGRPSKLPDVCYSWWVLSSLAIIGRLDWINYEKLTEFILKCQDEKKGGISDRPENEVDVFHTVFGVAGLSLMGYDNLVPIDPIYCMPKSVTSKFKKYPYK", "length": 325 }, "evidence": [ { "id": "I3L5Z8", "url": "https://omabrowser.org/oma/group/I3L5Z8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53611-1", "protein_name": "Geranylgeranyl transferase type-2 subunit beta", "gene_name": "RABGGTB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGTPQKDVIIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPEEVLQRVNVQPELVS", "length": 331 }, "evidence": [ { "id": "I3L5Z8", "url": "https://omabrowser.org/oma/group/I3L5Z8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5E9B3-1", "protein_name": "Geranylgeranyl transferase type-2 subunit beta", "gene_name": "RABGGTB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGTPQKDVIIKSDAPDTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILTFIKSCQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDINKVVEYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLRRVNVQPELVS", "length": 331 }, "evidence": [ { "id": "I3L5Z8", "url": "https://omabrowser.org/oma/group/I3L5Z8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q84J75-1", "protein_name": "Geranylgeranyl transferase type-2 subunit beta 1", "gene_name": "RGTB1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSTSSSQMVQLVADKHVRYILMAEKKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISWLMTCQHESGGFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFSGDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQIFCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVLSSLIMIDRVHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGVAGLSLLEYPGVKVIDPAYALPVDVVNRIIFTK", "length": 321 }, "evidence": [ { "id": "I3L5Z8", "url": "https://omabrowser.org/oma/group/I3L5Z8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9XZ68-1", "protein_name": "Geranylgeranyl transferase type-2 subunit beta", "gene_name": "RabGGTb", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDFTTFVKPSNGGGDSGGGGDADGGGQKLQFWKHVEYIENHGKQEDDYEYCMTEFLRMSGIYWGTTALDIMGQLERLERKSIIEFVKRCQCPNTGGFAPCEGHDPHLLYTLSAIQILCTYDALEEIDREAVVRFVVGLQQPDGSFFGDKWGEVDTRFSFCAVASLTLLGRMEQTIDVEKAVKFVLSCCNQTDGGFGSKPGAESHAGLIYCCVGFFSLTHRLHLLDVDKLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLTIMGRLHWISSEKLQQFILSCQDTETGGFSDRTGNMPDIFHTLFGIGGLSLLGHSGLKAINPTLCMPQYIIDRLGIKPQLLPRP", "length": 347 }, "evidence": [ { "id": "I3L5Z8", "url": "https://omabrowser.org/oma/group/I3L5Z8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "Rab geranylgeranyltransferase activity", "id": "GO:0004663", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004663", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "protein prenyltransferase activity", "id": "GO:0008318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008318", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "double-stranded DNA binding", "id": "GO:0003690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003690", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "mismatched DNA binding", "id": "GO:0030983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030983", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "ATP-dependent DNA damage sensor activity", "id": "GO:0140664", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140664", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Rab-protein geranylgeranyltransferase complex", "id": "GO:0005968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005968", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "recombination nodule", "id": "GO:0005713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005713", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "synaptonemal complex", "id": "GO:0000795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000795", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mismatch repair", "id": "GO:0006298", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006298", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" }, { "name": "reciprocal meiotic recombination", "id": "GO:0007131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007131", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z8", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 188, "end_pos": 190, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 328, "end_pos": 330, "annotation": "n_glycosylation_sequon" }, { "start_pos": 336, "end_pos": 338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 661, "end_pos": 663, "annotation": "n_glycosylation_sequon" }, { "start_pos": 678, "end_pos": 680, "annotation": "n_glycosylation_sequon" }, { "start_pos": 728, "end_pos": 730, "annotation": "n_glycosylation_sequon" }, { "start_pos": 815, "end_pos": 817, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "21240", "name": "", "equation": "geranylgeranyl diphosphate + L-cysteinyl-[protein] = S-geranylgeranyl-L-cysteinyl-[protein] + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "21240", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/21240" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5Z8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 932, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5Z8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5Z8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Z8" }, { "id": "PS00486", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00486" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA mismatch repair proteins mutS family", "eco_id": "ECO_0000259", "start_pos": 750, "end_pos": 766, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 188, "end_pos": 190 }, { "start_pos": 217, "end_pos": 219 }, { "start_pos": 233, "end_pos": 235 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 328, "end_pos": 330 }, { "start_pos": 336, "end_pos": 338 }, { "start_pos": 661, "end_pos": 663 }, { "start_pos": 678, "end_pos": 680 }, { "start_pos": 728, "end_pos": 730 }, { "start_pos": 815, "end_pos": 817 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STM2-1", "uniprot_ac": "F1STM2", "uniprot_id": "F1STM2_PIG", "mass": { "chemical_mass": 71249.0, "monoisotopic_mass": 71249.0 }, "refseq": {}, "gene_names": [ { "name": "DEUP1", "type": "recommended", "evidence": [ { "id": "F1STM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM2" } ] } ], "protein_names": [ { "name": "Deuterosome assembly protein 1", "type": "recommended", "evidence": [ { "id": "F1STM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM2/entry#names_and_taxonomy" } ] }, { "name": "Coiled-coil domain-containing protein 67", "type": "synonym", "evidence": [ { "id": "F1STM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STM2", "url": "https://www.uniprot.org/uniprotkb/F1STM2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DEUP1", "url": "https://www.uniprot.org/uniprotkb/F1STM2", "locus": { "chromosome": "9", "start_pos": 25893096, "end_pos": 25689034, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014943", "url": "https://www.ensembl.org/id/ENSSSCG00000014943" } ] } } ], "crossref": [ { "id": "F1STM2", "url": "https://alphafold.ebi.ac.uk/entry/F1STM2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014943", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014943", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515270", "url": "https://www.ncbi.nlm.nih.gov/gene/100515270", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031470", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031470", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR18875", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18875", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18875:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18875:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17045", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17045", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25771", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25771", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BKS8", "url": "https://www.uniprot.org/uniprotkb/A0A287BKS8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKS8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKS8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STM2", "url": "https://www.uniprot.org/uniprotkb/F1STM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STM2-1", "url": "https://www.uniprot.org/uniprotkb/F1STM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STM3", "url": "https://www.uniprot.org/uniprotkb/F1STM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STM3-1", "url": "https://www.uniprot.org/uniprotkb/F1STM3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQQFLDMENQAHNTMGASPCEAELQELMEQIDIMVSNKKLDWERKMRALETRLDLRDQELANAQTCLDQKGQEVGLLRQKLDSLEKCNLAMTQNYEGQLQTLKAQFSKLTNSFEKLRLHQMKQNRFRRKEVSHLREEIPFEMSNLNQKLEEFRAKSREWDKQEILYQTHLVSVDAQQKLLSEKCNQFQKQAQSYQTQLNGKKQGMEDSSSEIPQLLCEPDHSCETTERDEFIIEKLKSAVSEIALSRNKLQDENQKLLQELKMYQRQCQAMEAGLSEVKSELQSRDDLLRIIEMERLQLHRELTKIGECRSAQENKKRLESSYSPIKEPEKKRKELFSVTPDQPNHEKELNKIRSQLCQGEEYHSSEQERMRNEISDLTEELHQKEITIATIMKKAALLERQLKMELEIKEKMLAKQQVSDMRYKAVRTENTHLKGMMGDLDPGQYMSMDLSNREHSRHTSINKLEYENERLRNDLAKLHATGKSAWAHQNTYEEGGRYAYQSQIRMGENELSHDREPDRSTTPPLPPLPFQTKEVTSPLASDDEVFPMSPPDISFPASLAAQHFLLEEEKRAKELEKLLNTHIDELQRHTEFTLNKYTKLKQNRHI", "length": 607, "header": "tr|F1STM2-1|F1STM2_PIG Isoform 1 of Deuterosome assembly protein 1 OS=Sus scrofa OX=9823 GN=DEUP1 PE=3 SV=5 CANONICAL=F1STM2-1" }, "isoforms": [ { "isoform_ac": "A0A287BKS8-1", "url": "https://www.uniprot.org/uniprotkb/F1STM2/entry#A0A287BKS8-1", "sequence": { "sequence": "MENQAHNTMGASPCEAELQELMEQIDIMVSNKKLDWERKMRALETRLDLRDQELANAQTCLDQKGQEVGLLRQKLDSLEKCNLAMTQNYEGQLQTLKAQFSKLTNSFEWDKQEILYQTHLVSVDAQQKLLSEKCNQFQNSLPKVLYPTLHICSEFMQIYILFMPSEIEKQAQSYQTQLNGKKQGMEDSSSEIPQLLCEPDHSCETTERDEFIIEKLKSAVSEIALSRNKLQDENQKLLQELKMYQRQCQAMEAGLSEVKSELQSRDDLLRIIEMERLQLHRELTKIGECRSAQENKKRLESSYSPIKEPEKKRKELFSVTPDQPNHEKELNKIRSQLCQGEEYHSSEQERMRNEISDLTEELHQKEITIATIMKKAALLERQLKMELEIKEKMLAKQQVSDMRYKAVRTENTHLKGMMGDLDPGQYMSMDLSNREHSRHTSINKLEYENERLRNDLAKLHATGKSAWAHQNTYEEGGRLSHDREPDRSTTPPLPPLPFQTKEVTSPLASDDEVFPMSPPDISFPASLAAQHFLLEEEKRAKELEKLLNTHIDELQRHTEFTLNKYTKLKQNRHI", "length": 574, "header": "tr|A0A287BKS8-1|F1STM2_PIG Computationally mapped isoform of Deuterosome assembly protein 1 OS=Sus scrofa OX=9823 GN=DEUP1 PE=3 SV=2 CANONICAL=F1STM2-1" }, "locus": { "chromosome": "9", "start_pos": 25892366, "end_pos": 25786591, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052038.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052038.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057011.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057011.2" } ] } }, { "isoform_ac": "F1STM2-1", "url": "https://www.uniprot.org/uniprotkb/F1STM2/entry#F1STM2-1", "sequence": { "sequence": "MQQFLDMENQAHNTMGASPCEAELQELMEQIDIMVSNKKLDWERKMRALETRLDLRDQELANAQTCLDQKGQEVGLLRQKLDSLEKCNLAMTQNYEGQLQTLKAQFSKLTNSFEKLRLHQMKQNRFRRKEVSHLREEIPFEMSNLNQKLEEFRAKSREWDKQEILYQTHLVSVDAQQKLLSEKCNQFQKQAQSYQTQLNGKKQGMEDSSSEIPQLLCEPDHSCETTERDEFIIEKLKSAVSEIALSRNKLQDENQKLLQELKMYQRQCQAMEAGLSEVKSELQSRDDLLRIIEMERLQLHRELTKIGECRSAQENKKRLESSYSPIKEPEKKRKELFSVTPDQPNHEKELNKIRSQLCQGEEYHSSEQERMRNEISDLTEELHQKEITIATIMKKAALLERQLKMELEIKEKMLAKQQVSDMRYKAVRTENTHLKGMMGDLDPGQYMSMDLSNREHSRHTSINKLEYENERLRNDLAKLHATGKSAWAHQNTYEEGGRYAYQSQIRMGENELSHDREPDRSTTPPLPPLPFQTKEVTSPLASDDEVFPMSPPDISFPASLAAQHFLLEEEKRAKELEKLLNTHIDELQRHTEFTLNKYTKLKQNRHI", "length": 607, "header": "tr|F1STM2-1|F1STM2_PIG Isoform 1 of Deuterosome assembly protein 1 OS=Sus scrofa OX=9823 GN=DEUP1 PE=3 SV=5 CANONICAL=F1STM2-1" }, "locus": { "chromosome": "9", "start_pos": 25892366, "end_pos": 25786573, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016301.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016301.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015864.5", "url": "https://www.ensembl.org/id/ENSSSCP00000015864.5" } ] } }, { "isoform_ac": "F1STM3-1", "url": "https://www.uniprot.org/uniprotkb/F1STM2/entry#F1STM3-1", "sequence": { "sequence": "MQQFLDMENQAHNTMGASPCEAELQELMEQIDIMVSNKKLDWERKMRALETRLDLRDQELANAQTCLDQKGQEVGLLRQKLDSLEKCNLAMTQNYEGQLQTLKAQFSKLTNSFEKLRLHQMKQNRFRRKEVSHLREEIPFEMSNLNQKLEKQAQSYQTQLNGKKQGMEDSSSEIPQLLCEPDHSCETTERDEFIIEKLKSAVSEIALSRNKLQDENQKLLQELKMYQRQCQAMEAGLSEVKSELQSRDDLLRIIEMERLQLHRELTKIGECRSAQENKKRLESSYSPIKEPEKKRKELFSVTPDQPNHEKELNKIRSQLCQGEEYHSSEQERMRNEISDLTEELHQKEITIATIMKKAALLERQLKMELEIKEKMLAKQQVSDMRYKAVRTENTHLKGMMGDLDPGQYMSMDLSNREHSRHTSINKLEYENERLRNDLAKLHATGKSAWAHQNTYEEGGRLSHDREPDRSTTPPLPPLPFQTKEVTSPLASDDEVFPMSPPDISFPASLAAQHFLLEEEKRAKELEKLLNTHIDELQRHTEFTLNKYTKLKQNRHI", "length": 556, "header": "tr|F1STM3-1|F1STM3_PIG Computationally mapped isoform of Deuterosome assembly protein 1 OS=Sus scrofa OX=9823 GN=DEUP1 PE=3 SV=4 CANONICAL=F1STM2-1" }, "locus": { "chromosome": "9", "start_pos": 25892366, "end_pos": 25786573, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016300.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016300.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015863.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015863.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKS8", "url": "https://www.uniprot.org/uniprotkb/A0A287BKS8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STM2", "url": "https://www.uniprot.org/uniprotkb/F1STM2" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1STM2", "url": "https://www.uniprot.org/uniprotkb/F1STM2" } ], "pmid": "" }, { "name": "deuterosome", "id": "GO:0098536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098536", "evidence": [ { "database": "UniProtKB", "id": "F1STM2", "url": "https://www.uniprot.org/uniprotkb/F1STM2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell projection organization", "id": "GO:0030030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030030", "evidence": [ { "database": "UniProtKB", "id": "F1STM2", "url": "https://www.uniprot.org/uniprotkb/F1STM2" } ], "pmid": "" }, { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "F1STM2", "url": "https://www.uniprot.org/uniprotkb/F1STM2" } ], "pmid": "" }, { "name": "de novo centriole assembly involved in multi-ciliated epithelial cell differentiation", "id": "GO:0098535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098535", "evidence": [ { "database": "UniProtKB", "id": "F1STM2", "url": "https://www.uniprot.org/uniprotkb/F1STM2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1STM2", "url": "https://www.uniprot.org/uniprotkb/F1STM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STM2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 607, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STM2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STM2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM2" }, { "id": "PF25771", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25771" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CEP63/Deup1 CEP152 binding coiled coil", "eco_id": "ECO_0000259", "start_pos": 564, "end_pos": 598, "start_aa": "His", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1STM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM2" }, { "id": "PF17045", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17045" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CEP63/Deup1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 18, "end_pos": 286, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRA5-1", "uniprot_ac": "F1SRA5", "uniprot_id": "F1SRA5_PIG", "mass": { "chemical_mass": 86162.0, "monoisotopic_mass": 86162.0 }, "refseq": {}, "gene_names": [ { "name": "MRTFA", "type": "recommended", "evidence": [ { "id": "F1SRA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ] } ], "protein_names": [ { "name": "Myocardin related transcription factor A", "type": "synonym", "evidence": [ { "id": "F1SRA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRA5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRTFA", "url": "https://www.uniprot.org/uniprotkb/F1SRA5", "locus": { "chromosome": "5", "start_pos": 7972574, "end_pos": 7959312, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000075", "url": "https://www.ensembl.org/id/ENSSSCG00000000075" } ] } } ], "crossref": [ { "id": "F1SRA5", "url": "https://alphafold.ebi.ac.uk/entry/F1SRA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000075", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000075", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004018", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004018", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036361", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036361", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22793", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22793", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22793:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22793:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3899300", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3899300", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BKU7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BKU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BKU7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SRA5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGALGRCVESGCVLPRPHSSGLPSRQDPVTSRLWSWGLQRLLIAAIKATATEDYLKRKIRSRPERSELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVNYPKVADSSSFDEDSSDALSPEQPASHESQGSVPSPLEARGSESLPTATSVSPTQVVSQLPVGPESGETLFLAEQPPLPPSLSSGTAVPTKPLPTLIKQSQPKSAGEKSQRSKKAKELKPKVKKLKYHQYIPPDQKQDKGAPPMDSSYAKILQQQQLFLQLQILNQQQQQHYNYQTILPAPPKPAGEALGNGGAPPTRSLSTSSSASSGAPGPSGLVRQNSTLLAGKPGTLPANLDDMKVAELKQELKLRSLPVSGTKTDLIERLRAYQEHVGPAPGVPKAPATASILPKAGEVVVAFPAARLSTGPALMAAGLAPAEVVVATVTSNGVVKFGSTGSTPPVSPTPSERSLLSTGDENSTPGDTFGEMVTSPLTQLTLQASPLQILVKEESPRAGSCCLSPGARAELEGRDKDQMLQEKDKQIEELTRMLRQKQQLVEWLRLQLEQEKRAQQPEAVRAPAPASLGTAVKQENSFSSCQLSRQPPGPGHPFSPSLAAPAAHHADTCALVPPARVVKQEAVPPEPEPAPAPQLLLGPQGPSLSKGVTPPTLITDSTGTHLVLTVTNKNADSPGLASRSPQQPSSQPGSPAPGPPAQMDLEHPPQPLFGTPASLPKKEPPGYEEAVSQQPRQQENASSSQQMDDLFDILIQSGGKGRPTPRFHPLSPHRFAVPAAQEWQ", "length": 809, "header": "tr|F1SRA5-1|F1SRA5_PIG Isoform 1 of Myocardin related transcription factor A OS=Sus scrofa OX=9823 GN=MRTFA PE=4 SV=3 CANONICAL=F1SRA5-1" }, "isoforms": [ { "isoform_ac": "A0A287BKU7-1", "url": "https://www.uniprot.org/uniprotkb/F1SRA5/entry#A0A287BKU7-1", "sequence": { "sequence": "MQAVSLILCFLLCSALSCPVLSCPVLPCAGRDPLNGPDLWFERLRCKKDYLKRKIRSRPERSELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVNYPKVADSSSFDEDSSDALSPEQPASHESQGSVPSPLEARGSESLPTATSVSPTQVVSQLPVGPESGETLFLAEQPPLPPSLSSGTAVPTKPLPTLIKQSQPKSAGEKSQRSKKAKELKPKVKKLKYHQYIPPDQKQDKGAPPMDSSYAKILQQQQLFLQLQILNQQQQQHYNYQTILPAPPKPAGEALGNGGAPPTRSLSTSSSASSGAPGPSGLVRQNSTLLAGKPGTLPANLDDMKVAELKQELKLRSLPVSGTKTDLIERLRAYQEHVGPAPGVPKAPATASILPKAGEVVVAFPAARLSTGPALMAAGLAPAEVVVATVTSNGVVKFGSTGSTPPVSPTPSERSLLSTGDENSTPGDTFGEMVTSPLTQLTLQASPLQILVKEESPRAGSCCLSPGARAELEGRDKDQMLQEKDKQIEELTRMLRQKQQLVEWLRLQLEQEKRAQQPEAVRAPAPASLGTAVKQENSFSSCQLSRQPPGPGHPFSPSLAAPAAHHADTCALVPPARVVKQEAVPPEPEPAPAPQLLLGPQGPSLSKGVTPPTLITDSTGTHLVLTVTNKNADSPGLASRSPQQPSSQPGSPAPGPPAQMDLEHPPQPLFGTPASLPKKEPPGYEEAVSQQPRQQENASSSQQMDDLFDILIQSGGKGRPTPRFHPLSPHRFAVPAAQEWQ", "length": 804, "header": "tr|A0A287BKU7-1|F1SRA5_PIG Computationally mapped isoform of Myocardin related transcription factor A OS=Sus scrofa OX=9823 GN=MRTFA PE=4 SV=3 CANONICAL=F1SRA5-1" }, "locus": { "chromosome": "5", "start_pos": 7972571, "end_pos": 7959312, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000064575.3", "url": "https://www.ensembl.org/id/ENSSSCT00000064575.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056790.3", "url": "https://www.ensembl.org/id/ENSSSCP00000056790.3" } ] } }, { "isoform_ac": "F1SRA5-1", "url": "https://www.uniprot.org/uniprotkb/F1SRA5/entry#F1SRA5-1", "sequence": { "sequence": "MDGALGRCVESGCVLPRPHSSGLPSRQDPVTSRLWSWGLQRLLIAAIKATATEDYLKRKIRSRPERSELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPGPMELVEKNILPVESSLKEAIIVGQVNYPKVADSSSFDEDSSDALSPEQPASHESQGSVPSPLEARGSESLPTATSVSPTQVVSQLPVGPESGETLFLAEQPPLPPSLSSGTAVPTKPLPTLIKQSQPKSAGEKSQRSKKAKELKPKVKKLKYHQYIPPDQKQDKGAPPMDSSYAKILQQQQLFLQLQILNQQQQQHYNYQTILPAPPKPAGEALGNGGAPPTRSLSTSSSASSGAPGPSGLVRQNSTLLAGKPGTLPANLDDMKVAELKQELKLRSLPVSGTKTDLIERLRAYQEHVGPAPGVPKAPATASILPKAGEVVVAFPAARLSTGPALMAAGLAPAEVVVATVTSNGVVKFGSTGSTPPVSPTPSERSLLSTGDENSTPGDTFGEMVTSPLTQLTLQASPLQILVKEESPRAGSCCLSPGARAELEGRDKDQMLQEKDKQIEELTRMLRQKQQLVEWLRLQLEQEKRAQQPEAVRAPAPASLGTAVKQENSFSSCQLSRQPPGPGHPFSPSLAAPAAHHADTCALVPPARVVKQEAVPPEPEPAPAPQLLLGPQGPSLSKGVTPPTLITDSTGTHLVLTVTNKNADSPGLASRSPQQPSSQPGSPAPGPPAQMDLEHPPQPLFGTPASLPKKEPPGYEEAVSQQPRQQENASSSQQMDDLFDILIQSGGKGRPTPRFHPLSPHRFAVPAAQEWQ", "length": 809, "header": "tr|F1SRA5-1|F1SRA5_PIG Isoform 1 of Myocardin related transcription factor A OS=Sus scrofa OX=9823 GN=MRTFA PE=4 SV=3 CANONICAL=F1SRA5-1" }, "locus": { "chromosome": "5", "start_pos": 7972571, "end_pos": 7960124, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000081.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000081.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000080.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000080.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 478, "start_aa": "Thr", "end_pos": 478, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr478", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BKU7", "url": "https://www.uniprot.org/uniprotkb/A0A287BKU7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3899300", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3899300", "resource": "Reactome", "description": "SUMOylation of transcription cofactors" }, { "id": "R-SSC-5663220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "resource": "Reactome", "description": "RHO GTPases Activate Formins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" }, { "name": "actin monomer binding", "id": "GO:0003785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003785", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" }, { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" }, { "name": "smooth muscle cell differentiation", "id": "GO:0051145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051145", "evidence": [ { "database": "UniProtKB", "id": "F1SRA5", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 491, "end_pos": 493, "annotation": "n_glycosylation_sequon" }, { "start_pos": 765, "end_pos": 767, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRA5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 809, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRA5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRA5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRA5" }, { "id": "PS50800", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50800" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAP", "eco_id": "ECO_0000259", "start_pos": 369, "end_pos": 403, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 478 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 354, "end_pos": 356 }, { "start_pos": 491, "end_pos": 493 }, { "start_pos": 765, "end_pos": 767 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV06-1", "uniprot_ac": "F1SV06", "uniprot_id": "F1SV06_PIG", "mass": { "chemical_mass": 69535.0, "monoisotopic_mass": 69535.0 }, "refseq": { "ac": "XP_005665309", "name": "polyadenylate-binding protein 4 isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665309" }, "gene_names": [ { "name": "PABPC4", "type": "recommended", "evidence": [ { "id": "F1SV06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ] }, { "name": "PABPC4", "type": "synonym", "evidence": [ { "id": "XP_005665309", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665309" } ] } ], "protein_names": [ { "name": "Polyadenylate-binding protein", "type": "recommended", "evidence": [ { "id": "F1SV06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV06/entry#names_and_taxonomy" } ] }, { "name": "PABP", "type": "synonym", "evidence": [ { "id": "F1SV06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV06/entry#names_and_taxonomy" } ] }, { "name": "polyadenylate-binding protein 4 isoform X7", "type": "synonym", "evidence": [ { "id": "XP_005665309", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665309" } ] } ], "function": [ { "annotation": "Binds the poly(A) tail of mRNA.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FI85", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI85#function" }, { "database": "UniProtKB", "id": "RU362004", "url": "https://www.uniprot.org/uniprotkb/RU362004#function" }, { "database": "UniProtKB", "id": "A0A287BQ02", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ02#function" }, { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PABPC4", "url": "https://www.uniprot.org/uniprotkb/F1SV06", "locus": { "chromosome": "6", "start_pos": 95382302, "end_pos": 95399080, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003660", "url": "https://www.ensembl.org/id/ENSSSCG00000003660" } ] } } ], "crossref": [ { "id": "F1SV06", "url": "https://alphafold.ebi.ac.uk/entry/F1SV06", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003660", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003660", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12378", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12378", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12379", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12379", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12380", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12380", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12381", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12381", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515840", "url": "https://www.ncbi.nlm.nih.gov/gene/100515840", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002004", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002004", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CKFGDIL", "url": "https://omabrowser.org/oma/group/CKFGDIL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287BQ02", "url": "https://www.orthodb.org/?gene=A0A287BQ02", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SV06", "url": "https://www.orthodb.org/?gene=F1SV06", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46276", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46276", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46276:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46276:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00658", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00658", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005665309", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665309", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BQ02", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ02", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQ02-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQ02-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI85", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI85-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI85-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKU3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKU3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV06-1", "url": "https://www.uniprot.org/uniprotkb/F1SV06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS", "length": 631, "header": "tr|F1SV06-1|F1SV06_PIG Isoform 1 of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC4 PE=1 SV=1 CANONICAL=F1SV06-1" }, "isoforms": [ { "isoform_ac": "A0A287BQ02-1", "url": "https://www.uniprot.org/uniprotkb/F1SV06/entry#A0A287BQ02-1", "sequence": { "sequence": "MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS", "length": 660, "header": "tr|A0A287BQ02-1|F1SV06_PIG Computationally mapped isoform of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC4 PE=1 SV=2 CANONICAL=F1SV06-1" }, "locus": { "chromosome": "6", "start_pos": 95398489, "end_pos": 95383622, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036802.2", "url": "https://www.ensembl.org/id/ENSSSCT00000036802.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058510.2", "url": "https://www.ensembl.org/id/ENSSSCP00000058510.2" } ] } }, { "isoform_ac": "A0A8W4FI85-1", "url": "https://www.uniprot.org/uniprotkb/F1SV06/entry#A0A8W4FI85-1", "sequence": { "sequence": "MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVSWFSDPVTSAHLAQDVCGGVFCPHDLFLVPRLQSKGCCAVGM", "length": 557, "header": "tr|A0A8W4FI85-1|F1SV06_PIG Computationally mapped isoform of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC4 PE=1 SV=1 CANONICAL=F1SV06-1" }, "locus": { "chromosome": "6", "start_pos": 95398489, "end_pos": 95383812, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000100233.1", "url": "https://www.ensembl.org/id/ENSSSCT00000100233.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078598.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078598.1" } ] } }, { "isoform_ac": "A0A8W4FKU3-1", "url": "https://www.uniprot.org/uniprotkb/F1SV06/entry#A0A8W4FKU3-1", "sequence": { "sequence": "MVPQYEQRKSRRVVSCLSWDLSLHLCHTSVEVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS", "length": 351, "header": "tr|A0A8W4FKU3-1|F1SV06_PIG Computationally mapped isoform of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC4 PE=1 SV=1 CANONICAL=F1SV06-1" }, "locus": { "chromosome": "6", "start_pos": 95389431, "end_pos": 95383622, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092048.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092048.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080096.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080096.1" } ] } }, { "isoform_ac": "F1SV06-1", "url": "https://www.uniprot.org/uniprotkb/F1SV06/entry#F1SV06-1", "sequence": { "sequence": "MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS", "length": 631, "header": "tr|F1SV06-1|F1SV06_PIG Isoform 1 of Polyadenylate-binding protein OS=Sus scrofa OX=9823 GN=PABPC4 PE=1 SV=1 CANONICAL=F1SV06-1" }, "locus": { "chromosome": "6", "start_pos": 95398489, "end_pos": 95383622, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004056.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004056.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003965.1", "url": "https://www.ensembl.org/id/ENSSSCP00000003965.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FI85", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI85" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QEM0-1", "protein_name": "Polyadenylate-binding protein", "gene_name": "LOC100751841", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQGLFSKFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKHKVEQVPQDISVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVSSPVINPFQPAQAPSGYFMTTTSQTQNCGAYYAPNQTTQQGPGHRGSAQGARAHPFQNMSSAIQPATIPSFSTSGPASSQALRSMSTHRAGSASTQMMGSHPTARPVPQYKYTAGVRNPPQHLSAQPQVTMQRSAVPVQGKASLTASMLASASPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKIDEAIAVLQAHQAKETPQQAVGSVAGVPTA", "length": 637 }, "evidence": [ { "id": "F1SV06", "url": "https://omabrowser.org/oma/group/F1SV06/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "B5DF80-1", "protein_name": "Polyadenylate-binding protein", "gene_name": "Pabpc6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMASTSAVPNPGINPFQPAQGLSGYFMTATAPTQNRGTYYAPNQTTQQGPSARGSAQGTRAHPFQNMSSAIHPSNTMPSFSTSGPTSSQAVRHRTASTSTQMMGPHPAAASTAAAPAARTVTQYKYTAGVRNPPQHLNTQPQVTTQRSAVSAQGKESLTVSMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKVDEAIAVLQAHQAKETSQKAVSSVAGVPTS", "length": 643 }, "evidence": [ { "id": "F1SV06", "url": "https://omabrowser.org/oma/group/F1SV06/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q13310-1", "protein_name": "Polyadenylate-binding protein 4", "gene_name": "PABPC4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS", "length": 644 }, "evidence": [ { "id": "F1SV06", "url": "https://omabrowser.org/oma/group/F1SV06/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ZQA8-1", "protein_name": "Polyadenylate-binding protein 7", "gene_name": "PAB7", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATVHAALHAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPGMVYQSYPLMWKSANMIGSSYPNSEAVTYPPMVANAPSKNRQNRIGKLDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQRQSETVGMEMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKTNLTAPNTHRSDYLASGIAGVSIK", "length": 609 }, "evidence": [ { "id": "F1SV06", "url": "https://omabrowser.org/oma/group/F1SV06/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "pmid": "" }, { "name": "poly(A) binding", "id": "GO:0008143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008143", "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "pmid": "" }, { "name": "poly(U) RNA binding", "id": "GO:0008266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008266", "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SV06", "url": "https://www.uniprot.org/uniprotkb/F1SV06" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SV06-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 631, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SV06-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SV06" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV06" }, { "id": "PS51309", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51309" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PABC", "eco_id": "ECO_0000259", "start_pos": 538, "end_pos": 615, "start_aa": "Gln", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV06" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 89, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5Q4-1", "uniprot_ac": "F2Z5Q4", "uniprot_id": "F2Z5Q4_PIG", "mass": { "chemical_mass": 46961.0, "monoisotopic_mass": 46961.0 }, "refseq": { "ac": "XP_001927778", "name": "snRNA-activating protein complex subunit 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927778" }, "gene_names": [ { "name": "SNAPC3", "type": "recommended", "evidence": [ { "id": "F2Z5Q4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ] }, { "name": "SNAPC3", "type": "synonym", "evidence": [ { "id": "XP_001927778", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927778" } ] } ], "protein_names": [ { "name": "snRNA-activating protein complex subunit 3", "type": "recommended", "evidence": [ { "id": "F2Z5Q4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4/entry#names_and_taxonomy" } ] }, { "name": "Small nuclear RNA-activating complex polypeptide 3", "type": "synonym", "evidence": [ { "id": "F2Z5Q4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4/entry#names_and_taxonomy" } ] }, { "name": "snRNA-activating protein complex subunit 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001927778", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927778" } ] } ], "function": [ { "annotation": "Part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. Binds to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Recruits TBP and BRF2 to the U6 snRNA TATA box.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS31", "url": "https://www.uniprot.org/uniprotkb/A0A287BS31#function" }, { "database": "UniProtKB", "id": "ARBA00025193", "url": "https://www.uniprot.org/uniprotkb/ARBA00025193#function" }, { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SNAPC3", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4", "locus": { "chromosome": "1", "start_pos": 207215738, "end_pos": 207252396, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005184", "url": "https://www.ensembl.org/id/ENSSSCG00000005184" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005184", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005184", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156386", "url": "https://www.ncbi.nlm.nih.gov/gene/100156386", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022042", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022042", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156386", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156386", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AHRDDCL", "url": "https://omabrowser.org/oma/group/AHRDDCL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5Q4", "url": "https://www.orthodb.org/?gene=F2Z5Q4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13421", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13421", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13421:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13421:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12251", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12251", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6807505", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-76071", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76071", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001927778", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927778", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BS31", "url": "https://www.uniprot.org/uniprotkb/A0A287BS31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BS31-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BS31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5Q4-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEGSRGGPACGRMEDRQDPAPSSGGCGFPEYELPELNTRAFHVGAFGELWRCRLRGKGDLSLKEPPAPAVPEGDTVADSGREDAAVARDLGCSLEAAAELRAVCGLDKLKCLEEGEDPEVIPENTDLVTLGVRKRLLEHRKETITIDRVCRQETFAYEMESHAMGKKPENPADMIEEGELILSVNILYPVIFHKHKEHKPYQTILVLGSQKLTELRDAICCVSDLQIGGEFSNTPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTAKMEDFTFNDLYIKLGFPYLYCHQGDCEHVVVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN", "length": 412, "header": "tr|F2Z5Q4-1|F2Z5Q4_PIG Isoform 1 of snRNA-activating protein complex subunit 3 OS=Sus scrofa OX=9823 GN=SNAPC3 PE=3 SV=1 CANONICAL=F2Z5Q4-1" }, "isoforms": [ { "isoform_ac": "A0A287BS31-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4/entry#A0A287BS31-1", "sequence": { "sequence": "MAEGSRGGPACGRMEDRQDPAPSSGGCGFPEYELPELNTRAFHVGAFGELWRCRLRGKGDLSLKEPPAPAVPEGDTVADSGREDAAVARDLGCSLEAAAELRAVCGLDKLKCLEEGEDPEVIPENTDLVTLGVRKRLLEHRKETITIDRVCRQETFAYEMESHAMGKKPENPADMIEEGELILSVNILYPVIFHKHKEHKPYQTILVLGSQKLTELRDAICCVSDLQIGGEFSNTPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTAKMEDFTFNDLYIKLGFPYLYCHQGDCEHVVVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARFLAFEVFAVLNLKTYTLGYK", "length": 384, "header": "tr|A0A287BS31-1|F2Z5Q4_PIG Computationally mapped isoform of snRNA-activating protein complex subunit 3 OS=Sus scrofa OX=9823 GN=SNAPC3 PE=3 SV=2 CANONICAL=F2Z5Q4-1" }, "locus": { "chromosome": "1", "start_pos": 207252384, "end_pos": 207220983, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000040849.3", "url": "https://www.ensembl.org/id/ENSSSCT00000040849.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058933.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058933.3" } ] } }, { "isoform_ac": "F2Z5Q4-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4/entry#F2Z5Q4-1", "sequence": { "sequence": "MAEGSRGGPACGRMEDRQDPAPSSGGCGFPEYELPELNTRAFHVGAFGELWRCRLRGKGDLSLKEPPAPAVPEGDTVADSGREDAAVARDLGCSLEAAAELRAVCGLDKLKCLEEGEDPEVIPENTDLVTLGVRKRLLEHRKETITIDRVCRQETFAYEMESHAMGKKPENPADMIEEGELILSVNILYPVIFHKHKEHKPYQTILVLGSQKLTELRDAICCVSDLQIGGEFSNTPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTAKMEDFTFNDLYIKLGFPYLYCHQGDCEHVVVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN", "length": 412, "header": "tr|F2Z5Q4-1|F2Z5Q4_PIG Isoform 1 of snRNA-activating protein complex subunit 3 OS=Sus scrofa OX=9823 GN=SNAPC3 PE=3 SV=1 CANONICAL=F2Z5Q4-1" }, "locus": { "chromosome": "1", "start_pos": 207252384, "end_pos": 207219650, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005715.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005715.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005573.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005573.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BS31", "url": "https://www.uniprot.org/uniprotkb/A0A287BS31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156386", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156386", "resource": "KEGG Pathway" }, { "id": "R-SSC-6807505", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "resource": "Reactome", "description": "RNA polymerase II transcribes snRNA genes" }, { "id": "R-SSC-76071", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-76071", "resource": "Reactome", "description": "RNA Polymerase III Transcription Initiation From Type 3 Promoter" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YKI2-1", "protein_name": "snRNA-activating protein complex subunit 3", "gene_name": "SNAPC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAEAVEYEAGETHTRVFRVGALGSGWQQCLQPRDLSLAEEEEEEEAAGAVAEELGCTAETAAELRALCSVDTLVSADQERDPEAIPEDSGLETLRFRKKALQRREERIVVDRACRQETLTYEMESHAIGKRPDDAADLVEEGELLLTLNVFYPVIFQKHKEHKPYQTVLVLGSQRLTELRDSLSCVSDLQIGGEFSSEPDRAPEHISKDIYKSAFFYFEGIFYNDSRYPECRDLSRTIIEWSESRDRGYGNLQSVKMEDYTFNDLSLRIGYPYLFCHQGDCEHIVIVTDIRLIHHEDCLDRNLYPLLIKKHWLCTRKCFVCKMYTARWVTNKDSLAPEDPCFFCDVCFRMLHYDAEGNKLGDFLAYPYVDPGIFN", "length": 376 }, "evidence": [ { "id": "F2Z5Q4", "url": "https://omabrowser.org/oma/group/F2Z5Q4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5BK68-1", "protein_name": "snRNA-activating protein complex subunit 3", "gene_name": "Snapc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEDPQGGGAGGPQHPVPSGSHSSFPEYELPELHTRVFHVGAFGELWRGRLGAQDLSLNEPQAAAQPTDGEASNNGFEDAAVAEDLGCSLEAAAELRVVCGLDKLRCLGEDEDPEVIPENTDLVTLCVRKGLLDYREENITIDRACRQETFAYEMESHALGKKPENPADMIEEGESILSVNILYPVIFNKHREHKPYQTVLVLGSQKLTELRDSICCVSDLQIGGEFSNAPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFNDLNIKLGFPYLYCHQGDCEHVVVITDIRLVHHDDCLDRTLYPLLTKKHWLWTRKCFVCKMYTARWVTNNDTFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN", "length": 407 }, "evidence": [ { "id": "F2Z5Q4", "url": "https://omabrowser.org/oma/group/F2Z5Q4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q92966-1", "protein_name": "snRNA-activating protein complex subunit 3", "gene_name": "SNAPC3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEGSRGGPTCSGVGGRQDPVSGSGGCNFPEYELPELNTRAFHVGAFGELWRGRLRGAGDLSLREPPASALPGSQAADSDREDAAVARDLDCSLEAAAELRAVCGLDKLKCLEDGEDPEVIPENTDLVTLGVRKRFLEHREETITIDRACRQETFVYEMESHAIGKKPENSADMIEEGELILSVNILYPVIFHKHKEHKPYQTMLVLGSQKLTQLRDSIRCVSDLQIGGEFSNTPDQAPEHISKDLYKSAFFYFEGTFYNDKRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFNDLCIKLGFPYLYCHQGDCEHVIVITDIRLVHHDDCLDRTLYPLLIKKHWLWTRKCFVCKMYTARWVTNNDSFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN", "length": 411 }, "evidence": [ { "id": "F2Z5Q4", "url": "https://omabrowser.org/oma/group/F2Z5Q4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D2C9-1", "protein_name": "snRNA-activating protein complex subunit 3", "gene_name": "Snapc3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEDLQGGGAGGPQHPVPSASHSSFPEYELPELHTRVFHVGSFGELWRGRLGAQDLSLSEPQAAEQPTDGGASNDGFEDAAVASDLGCSLEAAAELRVVCGLDKLRCLGEDEDPEVIPENTDLVTLCVRKGLLDYREENITIDRACRQEIFAYEMESHALGKKPENPADMIEEGECILSVNILYPVIFNKHKEHKPYQTMLVLGSQKLTELRDSICCVSDLQIGGEFSNAPDQAPEHISKDLYKSAFFYFEGTFYNDRRYPECRDLSRTIIEWSESHDRGYGKFQTARMEDFTFNDLHIKLGFPYLYCHQGDCEHVVVITDIRLVHHDDCLDRTLYPLLTKKHWLWTRKCFVCKMYTARWVTNNDTFAPEDPCFFCDVCFRMLHYDSEGNKLGEFLAYPYVDPGTFN", "length": 407 }, "evidence": [ { "id": "F2Z5Q4", "url": "https://omabrowser.org/oma/group/F2Z5Q4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "pmid": "" }, { "name": "bent DNA binding", "id": "GO:0003681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003681", "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "pmid": "" }, { "name": "RNA polymerase III type 3 promoter sequence-specific DNA binding", "id": "GO:0001006", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001006", "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "pmid": "" }, { "name": "snRNA-activating protein complex", "id": "GO:0019185", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019185", "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "pmid": "" }, { "name": "snRNA transcription by RNA polymerase II", "id": "GO:0042795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042795", "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "pmid": "" }, { "name": "snRNA transcription by RNA polymerase III", "id": "GO:0042796", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042796", "evidence": [ { "database": "UniProtKB", "id": "F2Z5Q4", "url": "https://www.uniprot.org/uniprotkb/F2Z5Q4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 369, "end_pos": 371 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRD2-1", "uniprot_ac": "F1SRD2", "uniprot_id": "F1SRD2_PIG", "mass": { "chemical_mass": 82116.0, "monoisotopic_mass": 82116.0 }, "refseq": {}, "gene_names": [ { "name": "ANO10", "type": "recommended", "evidence": [ { "id": "F1SRD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRD2" } ] } ], "protein_names": [ { "name": "Anoctamin", "type": "recommended", "evidence": [ { "id": "F1SRD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRD2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRD2", "url": "https://www.uniprot.org/uniprotkb/F1SRD2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANO10", "url": "https://www.uniprot.org/uniprotkb/F1SRD2", "locus": { "chromosome": "13", "start_pos": 26734107, "end_pos": 27006539, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011296", "url": "https://www.ensembl.org/id/ENSSSCG00000011296" } ] } } ], "crossref": [ { "id": "F1SRD2", "url": "https://alphafold.ebi.ac.uk/entry/F1SRD2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011296", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011296", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007632", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007632", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12308", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12308", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12308:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12308:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04547", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04547", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2672351", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BSV3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BSV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BSV3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKB9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RH91", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RH91", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RH91-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RH91-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRD2", "url": "https://www.uniprot.org/uniprotkb/F1SRD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRD2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRLSSGLTSQCGRARALESPGPPLASSVAPGASGSRRLLGTPPETWSAEAAASFSKMKVTLSALDTHESSFTPLVVIELAQDVKEETKEWLKSRIITKKKDGGAQLLFRPLLNKYEKETLENQNLYLVGASKIRLLLGAEAVGLVKECNDNTMRAFTYGTRHNFKGFDDDNDDFLTMAEQQFIIKHELENLRARDEKMIPGYPQAKLYPGKSLLRRLLTSGIVIQVFPLHDNEALKKLEDTWYTRFTIKYQPIDSIRGYFGETIALYFGFLEYFTFALIPMAVIGLPYYLFVWEDYDKYVIFASFNLIWSTVILEVWKRGCASMTYRWGTLVMKRQFEEPRPGYHGVLGINSVTGREEPLYPSYKRQLRIYLVSLPFVCLCLYFSLFVMMIYFDMENWALGLHENSGSEWTSILLYVPSIIYAIVIEIMNRLYRYAAEFLTSWENHRLESAYQNHLILKVLVFNFLNCFASLFYIAFVLRDMKLLRQSLATLLITSQILNQIVESLLPYWLQKKHHVQVKKKVQALKADIDATLYEQVVLEKEMGTYLGTFDDYLELFLQFGYVSLFSCVYPLAAAFAVLNNLTEVNSDALKMCRVFKRPFSEPSANIGVWQLAFETMSVISVVTNCALIGMSPQVNALFPDSKADLILIVVAVEHALLALKFILAFAIPDKPRHIQMKLARLEFESLEALKQQQMKLVAENLKEEWREGGKEKTP", "length": 717, "header": "tr|F1SRD2-1|F1SRD2_PIG Isoform 1 of Anoctamin OS=Sus scrofa OX=9823 GN=ANO10 PE=1 SV=4 CANONICAL=F1SRD2-1" }, "isoforms": [ { "isoform_ac": "A0A287BSV3-1", "url": "https://www.uniprot.org/uniprotkb/F1SRD2/entry#A0A287BSV3-1", "sequence": { "sequence": "MKVTLSALDTHESSFTPLVVIELAQDVKEETKEWLKSRIITKKKDGDDNDDFLTMAEQQFIIKHELENLRARDEKMIPGYPQAKLYPGKSLLRRLLTSGIVIQVFPLHDNEALKKLEDTWYTRFTIKYQPIDSIRGYFGETIALYFGFLEYFTFALIPMAVIGLPYYLFVWEDYDKYVIFASFNLIWSTVILEVWKRGCASMTYRWGTLVMKRQFEEPRPGYHGVLGINSVTGREEPLYPSYKRQLRIYLVSLPFVCLCLYFSLFVMMIYFDMENWALGLHENSGSEWTSILLYVPSIIYAIVIEIMNRLYRYAAEFLTSWENHRLESAYQNHLILKVLVFNFLNCFASLFYIAFVLRDMKLLRQSLATLLITSQILNQIVESLLPYWLQKKHHVQVKKKVQALKADIDATLYEQVVLEKEMGTYLGTFDDYLELFLQFGYVSLFSCVYPLAAAFAVLNNLTEVNSDALKMCRVFKRPFSEPSANIGVWQLAFETMSVISVVTNCALIGMSPQVNALFPDSKADLILIVVAVEHALLALKFILAFAIPDKPRHIQMKLARLEFESLEALKQQQMKLVAENLKEEWREGGKEKTP", "length": 594, "header": "tr|A0A287BSV3-1|F1SRD2_PIG Computationally mapped isoform of Anoctamin OS=Sus scrofa OX=9823 GN=ANO10 PE=1 SV=1 CANONICAL=F1SRD2-1" }, "locus": { "chromosome": "13", "start_pos": 26954907, "end_pos": 26734529, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052545.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052545.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059222.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059222.2" } ] } }, { "isoform_ac": "A0A5G2QKB9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRD2/entry#A0A5G2QKB9-1", "sequence": { "sequence": "MRRLSSGLTSQCGRARALESPGPPLASSVAPGASGSRRLLGTPPETWSAEAAASFSKMKVTLSALDTHESSFTPLVVIELAQDVKEETKEWLKSRIITKKKDGGAQLLFRPLLNKYEKETLENQNLYLVGASKIRLLLGAEAVGLVKECNDNTMRAFTYGTRHNFKGFDDDNDDFLTMAEQQFIIKHELENLRARDEKMIPGYPQAKLYPGKSLLRRLLTSGIVIQVFPLHDNEALKKLEDTWYTRFTIKYQPIENHRLESAYQNHLILKVLVFNFLNCFASLFYIAFVLRDMKLLRQSLATLLITSQILNQIVESLLPYWLQKKHHVQVKKKVQALKADIDATLYEQVVLEKEMGTYLGTFDDYLELFLQFGYVSLFSCVYPLAAAFAVLNNLTEVNSDALKMCRVFKRPFSEPSANIGVWQLAFETMSVISVVTNCALIGMSPQVNALFPDSKADLILIVVAVEHALLALKFILAFAIPDKPRHIQMKLARLEFESLEALKQQQMKLVAENLKEEWREGGKEKTP", "length": 527, "header": "tr|A0A5G2QKB9-1|F1SRD2_PIG Computationally mapped isoform of Anoctamin OS=Sus scrofa OX=9823 GN=ANO10 PE=1 SV=2 CANONICAL=F1SRD2-1" }, "locus": { "chromosome": "13", "start_pos": 27006234, "end_pos": 26734529, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072735.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072735.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065263.2", "url": "https://www.ensembl.org/id/ENSSSCP00000065263.2" } ] } }, { "isoform_ac": "A0A5G2RH91-1", "url": "https://www.uniprot.org/uniprotkb/F1SRD2/entry#A0A5G2RH91-1", "sequence": { "sequence": "MKVTLSALDTHESSFTPLVVIELAQDVKEETKEWLKSRIITKKKDGVRRLLTSGIVIQVFPLHDNEALKKLEDTWYTRFTIKYQPIDSIRGYFGETIALYFGFLEYFTFALIPMAVIGLPYYLFVWEDYDKYVIFASFNLIWSTVILEVWKRGCASMTYRWGTLVMKRQFEEPRPGYHGVLGINSVTGREEPLYPSYKRQLRIYLVSLPFVCLCLYFSLFVMMIYFDMENWALGLHENSGSEWTSILLYVPSIIYAIVIEIMNRLYRYAAEFLTSWENHRLESAYQNHLILKVLVFNFLNCFASLFYIAFVLRDMKLLRQSLATLLITSQILNQIVESLLPYWLQKKHHVQVKKKVQALKADIDATLYEQVVLEKEMGTYLGTFDDYLELFLQFGYVSLFSCVYPLAAAFAVLNNLTEVNSDALKMCRVFKRPFSEPSANIGVWQLAFETMSVISVVTNCALIGMSPQVNALFPDSKADLILIVVAVEHALLALKFILAFAIPDKPRHIQMKLARLEFESLEALKQQQMKLVAENLKEEWREGGKEKTP", "length": 549, "header": "tr|A0A5G2RH91-1|F1SRD2_PIG Computationally mapped isoform of Anoctamin OS=Sus scrofa OX=9823 GN=ANO10 PE=1 SV=1 CANONICAL=F1SRD2-1" }, "locus": { "chromosome": "13", "start_pos": 26954907, "end_pos": 26734529, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069150.2", "url": "https://www.ensembl.org/id/ENSSSCT00000069150.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070681.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070681.1" } ] } }, { "isoform_ac": "F1SRD2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRD2/entry#F1SRD2-1", "sequence": { "sequence": "MRRLSSGLTSQCGRARALESPGPPLASSVAPGASGSRRLLGTPPETWSAEAAASFSKMKVTLSALDTHESSFTPLVVIELAQDVKEETKEWLKSRIITKKKDGGAQLLFRPLLNKYEKETLENQNLYLVGASKIRLLLGAEAVGLVKECNDNTMRAFTYGTRHNFKGFDDDNDDFLTMAEQQFIIKHELENLRARDEKMIPGYPQAKLYPGKSLLRRLLTSGIVIQVFPLHDNEALKKLEDTWYTRFTIKYQPIDSIRGYFGETIALYFGFLEYFTFALIPMAVIGLPYYLFVWEDYDKYVIFASFNLIWSTVILEVWKRGCASMTYRWGTLVMKRQFEEPRPGYHGVLGINSVTGREEPLYPSYKRQLRIYLVSLPFVCLCLYFSLFVMMIYFDMENWALGLHENSGSEWTSILLYVPSIIYAIVIEIMNRLYRYAAEFLTSWENHRLESAYQNHLILKVLVFNFLNCFASLFYIAFVLRDMKLLRQSLATLLITSQILNQIVESLLPYWLQKKHHVQVKKKVQALKADIDATLYEQVVLEKEMGTYLGTFDDYLELFLQFGYVSLFSCVYPLAAAFAVLNNLTEVNSDALKMCRVFKRPFSEPSANIGVWQLAFETMSVISVVTNCALIGMSPQVNALFPDSKADLILIVVAVEHALLALKFILAFAIPDKPRHIQMKLARLEFESLEALKQQQMKLVAENLKEEWREGGKEKTP", "length": 717, "header": "tr|F1SRD2-1|F1SRD2_PIG Isoform 1 of Anoctamin OS=Sus scrofa OX=9823 GN=ANO10 PE=1 SV=4 CANONICAL=F1SRD2-1" }, "locus": { "chromosome": "13", "start_pos": 27006234, "end_pos": 26734529, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012366.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012366.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012043.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012043.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BSV3", "url": "https://www.uniprot.org/uniprotkb/A0A287BSV3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2672351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "resource": "Reactome", "description": "Stimuli-sensing channels" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SRD2", "url": "https://www.uniprot.org/uniprotkb/F1SRD2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRD2", "url": "https://www.uniprot.org/uniprotkb/F1SRD2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium-activated cation channel activity", "id": "GO:0005227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005227", "evidence": [ { "database": "UniProtKB", "id": "F1SRD2", "url": "https://www.uniprot.org/uniprotkb/F1SRD2" } ], "pmid": "" }, { "name": "intracellularly calcium-gated chloride channel activity", "id": "GO:0005229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005229", "evidence": [ { "database": "UniProtKB", "id": "F1SRD2", "url": "https://www.uniprot.org/uniprotkb/F1SRD2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "chloride transmembrane transport", "id": "GO:1902476", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902476", "evidence": [ { "database": "UniProtKB", "id": "F1SRD2", "url": "https://www.uniprot.org/uniprotkb/F1SRD2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 583, "end_pos": 585, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRD2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 717, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRD2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRD2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRD2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRD2" }, { "id": "PF04547", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04547" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Anoctamin transmembrane", "eco_id": "ECO_0000259", "start_pos": 257, "end_pos": 683, "start_aa": "Ile", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 583, "end_pos": 585 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L7I0-1", "uniprot_ac": "I3L7I0", "uniprot_id": "I3L7I0_PIG", "mass": { "chemical_mass": 78668.0, "monoisotopic_mass": 78668.0 }, "refseq": {}, "gene_names": [ { "name": "P3H1", "type": "recommended", "evidence": [ { "id": "I3L7I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ] } ], "protein_names": [ { "name": "Prolyl 3-hydroxylase 1", "type": "synonym", "evidence": [ { "id": "I3L7I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7I0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "P3H1", "url": "https://www.uniprot.org/uniprotkb/I3L7I0", "locus": { "chromosome": "6", "start_pos": 168687829, "end_pos": 168668311, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023920", "url": "https://www.ensembl.org/id/ENSSSCG00000023920" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023920", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023920", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR005123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056585", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056585", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14049", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14049", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14049:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14049:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23557", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23557", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "22872", "url": "https://www.rhea-db.org/rhea/22872", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BT04", "url": "https://www.uniprot.org/uniprotkb/A0A287BT04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BT04-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BT04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7I0-1", "url": "https://www.uniprot.org/uniprotkb/I3L7I0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARALRLLTMLWVVAAAASRAEAESEAGWDMTAPDLLFAEGTAAYARGDWAGVVLSMERALRSRAALRALRLRCRTQCAADLPWELEPDSPPSLAQASGAAALRDLRFFGGLLRRAACLRRCLGPSAAHSLSEELELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEADFKDLEAKPHMHEFRLGVRLYSEEQPQEAVPHLEAALQEYFLADEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLSCKQSCVTELASHPGREKPFEDFLPSHYNYLQFAYYNIGNYTQAIECAKTYLLFFPNDEVMSQNLAYYTAMLGDEPAGSIRPRQSAQEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAARISQEIGNLMKEIETLVEEKAKESLDVSRLTREGGPLLFDGIRLTMNSKVLNGSQRVVMDGVISAEECRALQRLTNAAATSGDGYRGQTSPHTPSEKFYGVTVFKALKLGQEGKVPLQSAHLYYNVTEKVRRVMESYFRLDSPLYFSYSHLVCRTAIEEAQAERKDSSHPVHVDNCILNAEALVCIKEPPAYTYRDYRFRLPPAPGARSLSLPSTRMFGASSSQGPRPSGSQVRQQRNCHSVVCEQEGKGGLGTAAAQRRAGRSLTRAGAGRHQRRFQKAFFS", "length": 698, "header": "tr|I3L7I0-1|I3L7I0_PIG Isoform 1 of Prolyl 3-hydroxylase 1 OS=Sus scrofa OX=9823 GN=P3H1 PE=1 SV=3 CANONICAL=I3L7I0-1" }, "isoforms": [ { "isoform_ac": "A0A287BT04-1", "url": "https://www.uniprot.org/uniprotkb/I3L7I0/entry#A0A287BT04-1", "sequence": { "sequence": "MAARALRLLTMLWVVAAAASRAEAESEAGWDMTAPDLLFAEGTAAYARGDWAGVVLSMERALRSRAALRALRLRCRTQCAADLPWELEPDSPPSLAQASGAAALRDLRFFGGLLRRAACLRRCLGPSAAHSLSEELELEFRKRSPYNYLQVAYFKHEFRLGVRLYSEEQPQEAVPHLEAALQEYFLADEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLSCKQSCVTELASHPGREKPFEDFLPSHYNYLQFAYYNIGNYTQAIECAKTYLLFFPNDEVMSQNLAYYTAMLGDEPAGSIRPRQSAQEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAARISQEIGNLMKEIETLVEEKAKESLDVSRLTREGGPLLFDGIRLTMNSKVLNGSQRVVMDGVISAEECRALQRLTNAAATSGDGYRGQTSPHTPSEKFYGVTVFKALKLGQEGKVPLQSAHLYYNVTEKVRRVMESYFRLDSPLYFSYSHLVCRTAIEEAQAERKDSSHPVHVDNCILNAEALVCIKEPPAYTYRDYSAILYLNGDFDGGNFYFTELDAKTVTAEVQPQCGRAVGFSSGTENPHGVKAVTRGQRCAIALWFTLDARHSERDRVQADDLVKMLFSPEETDIPHEQPPEAQEGPLPPAQETVSSSESGHKDEL", "length": 685, "header": "tr|A0A287BT04-1|I3L7I0_PIG Computationally mapped isoform of Prolyl 3-hydroxylase 1 OS=Sus scrofa OX=9823 GN=P3H1 PE=1 SV=2 CANONICAL=I3L7I0-1" }, "locus": { "chromosome": "6", "start_pos": 168687514, "end_pos": 168668370, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055681.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055681.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059594.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059594.2" } ] } }, { "isoform_ac": "I3L7I0-1", "url": "https://www.uniprot.org/uniprotkb/I3L7I0/entry#I3L7I0-1", "sequence": { "sequence": "MAARALRLLTMLWVVAAAASRAEAESEAGWDMTAPDLLFAEGTAAYARGDWAGVVLSMERALRSRAALRALRLRCRTQCAADLPWELEPDSPPSLAQASGAAALRDLRFFGGLLRRAACLRRCLGPSAAHSLSEELELEFRKRSPYNYLQVAYFKINKLEKAVAAAHTFFVGNPEHMEMRQNLDYYQTMSGVKEADFKDLEAKPHMHEFRLGVRLYSEEQPQEAVPHLEAALQEYFLADEECRALCEGPYDYDGYNYLEYNADLFQAITDHYIQVLSCKQSCVTELASHPGREKPFEDFLPSHYNYLQFAYYNIGNYTQAIECAKTYLLFFPNDEVMSQNLAYYTAMLGDEPAGSIRPRQSAQEYRQRSLLEKELLFFAYDVFGIPFVDPDSWTPEEVIPKRLQEKQKSERETAARISQEIGNLMKEIETLVEEKAKESLDVSRLTREGGPLLFDGIRLTMNSKVLNGSQRVVMDGVISAEECRALQRLTNAAATSGDGYRGQTSPHTPSEKFYGVTVFKALKLGQEGKVPLQSAHLYYNVTEKVRRVMESYFRLDSPLYFSYSHLVCRTAIEEAQAERKDSSHPVHVDNCILNAEALVCIKEPPAYTYRDYRFRLPPAPGARSLSLPSTRMFGASSSQGPRPSGSQVRQQRNCHSVVCEQEGKGGLGTAAAQRRAGRSLTRAGAGRHQRRFQKAFFS", "length": 698, "header": "tr|I3L7I0-1|I3L7I0_PIG Isoform 1 of Prolyl 3-hydroxylase 1 OS=Sus scrofa OX=9823 GN=P3H1 PE=1 SV=3 CANONICAL=I3L7I0-1" }, "locus": { "chromosome": "6", "start_pos": 168686372, "end_pos": 168668370, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025559.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025559.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019985.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019985.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BT04", "url": "https://www.uniprot.org/uniprotkb/A0A287BT04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" }, { "name": "L-ascorbic acid binding", "id": "GO:0031418", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031418", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" }, { "name": "procollagen-proline 3-dioxygenase activity", "id": "GO:0019797", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019797", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "collagen metabolic process", "id": "GO:0032963", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032963", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" }, { "name": "negative regulation of post-translational protein modification", "id": "GO:1901874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901874", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" }, { "name": "protein stabilization", "id": "GO:0050821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050821", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" }, { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" }, { "name": "regulation of protein secretion", "id": "GO:0050708", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050708", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" }, { "name": "bone development", "id": "GO:0060348", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060348", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "I3L7I0", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 316, "end_pos": 318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 540, "end_pos": 542, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "22872", "name": "", "equation": "L-prolyl-[collagen] + 2-oxoglutarate + O2 = trans-3-hydroxy-L-prolyl-[collagen] + succinate + CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "22872", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/22872" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L7I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7I0" }, { "id": "SM00702", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00702" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Prolyl 4-hydroxylase alpha subunit", "eco_id": "ECO_0000259", "start_pos": 469, "end_pos": 657, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 316, "end_pos": 318 }, { "start_pos": 467, "end_pos": 469 }, { "start_pos": 540, "end_pos": 542 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSX9-1", "uniprot_ac": "F1SSX9", "uniprot_id": "F1SSX9_PIG", "mass": { "chemical_mass": 100476.0, "monoisotopic_mass": 100476.0 }, "refseq": { "ac": "XP_013852627", "name": "semaphorin-6C isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852627" }, "gene_names": [ { "name": "SEMA6C", "type": "recommended", "evidence": [ { "id": "F1SSX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ] }, { "name": "SEMA6C", "type": "synonym", "evidence": [ { "id": "XP_013852627", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852627" } ] } ], "protein_names": [ { "name": "Semaphorin-6C", "type": "recommended", "evidence": [ { "id": "F1SSX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX9/entry#names_and_taxonomy" } ] }, { "name": "Semaphorin-Y", "type": "synonym", "evidence": [ { "id": "F1SSX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX9/entry#names_and_taxonomy" } ] }, { "name": "semaphorin-6C isoform X7", "type": "synonym", "evidence": [ { "id": "XP_013852627", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852627" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SEMA6C", "url": "https://www.uniprot.org/uniprotkb/F1SSX9", "locus": { "chromosome": "4", "start_pos": 98122347, "end_pos": 98107360, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006635", "url": "https://www.ensembl.org/id/ENSSSCG00000006635" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006635", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006635", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100153477", "url": "https://www.ncbi.nlm.nih.gov/gene/100153477", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153477", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153477", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DMKNCAM", "url": "https://omabrowser.org/oma/group/DMKNCAM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A480LR33", "url": "https://www.orthodb.org/?gene=A0A480LR33", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SSX9", "url": "https://www.orthodb.org/?gene=F1SSX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11036:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11036:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01403", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01403", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01437", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01437", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013852627", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013852627", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A480LR33", "url": "https://www.uniprot.org/uniprotkb/A0A480LR33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A480LR33-1", "url": "https://www.uniprot.org/uniprotkb/A0A480LR33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LF43", "url": "https://www.uniprot.org/uniprotkb/I3LF43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LF43-1", "url": "https://www.uniprot.org/uniprotkb/I3LF43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRTPYFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPLSWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLTWRSQDMENCAVRGKLTDECYNYIRVLVPWNSQTLLACGTNSFSPMCRSYGITSLQQEGEELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDVLTFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPYRNTTVLFLGSSDGTVLKVLPPGGQSGAHEPILLEEIDAYSPSRCSGKRAAQTARRVIGLELDTEGHRLFVAFSGCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGTDVDPAGKQESMEVDDCQDGATGSQSGTGDSTYGVRRDLPPASASRSVPIPLLLACVAAAFAMGASVSGLLVSCACRRAHRHRSKDIESPGLPRPLSLRSLARLHGAGPEPPPPPKDGEGALTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRHPGGPWEWNQNGNNAKEGRGRTRGGNATGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEAEPPAAAPFTSRALPPEPTPSPTLFAGSCLLPRDCAPPRRLDVPPEGKGPAPAARPALSAPAPRLGVGGSRRLPFSTHRAPPALLTRVPSGGPSRYSGGAGKHLLYLGRPDGYRGRALKRVDVEKSQGPSKPPLVGPPSQQVVPNGSHFNF", "length": 934, "header": "tr|F1SSX9-1|F1SSX9_PIG Isoform 1 of Semaphorin-6C OS=Sus scrofa OX=9823 GN=SEMA6C PE=3 SV=4 CANONICAL=F1SSX9-1" }, "isoforms": [ { "isoform_ac": "A0A480LR33-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX9/entry#A0A480LR33-1", "sequence": { "sequence": "MPRTPYFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPLSWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLTWRSQDMENCAVRGKLTDECYNYIRVLVPWNSQTLLACGTNSFSPMCRSYGITSLQQEGEELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDVLTFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPYRNTTVLFLGSSDGTVLKVLPPGGQSGAHEPILLEEIDAYSPSRCSGKRAAQTARRVIGLELDTEGHRLFVAFSGCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGTDVDPAGKQESMEVDDCQDGATGSQSGTGDSTYVLLGRDPSPETPSPPSDAQPRPQSSTLGAHTQGVRRDLPPASASRSVPIPLLLACVAAAFAMGASVSGLLVSCACRRAHRHRSKDIESPGLPRPLSLRSLARLHGAGPEPPPPPKDGEGALTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRHPGGPWEWNQNGNNAKEGRGRTRGGNATGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEAEPPAAAPFTSRALPPEPTPSPTLFAGSCLLPRDCAPPRRLDVPPEGKGPAPAARPALSAPAPRLGVGGSRRLPFSTHRAPPALLTRVPSGGPSRYSGGAGKHLLYLGRPDGYRGRALKRVDVEKSQGPSKPPLVGPPSQQVVPNGSHFNF", "length": 966, "header": "tr|A0A480LR33-1|F1SSX9_PIG Computationally mapped isoform of Semaphorin-6C OS=Sus scrofa OX=9823 GN=SEMA6C PE=3 SV=1 CANONICAL=F1SSX9-1" }, "locus": { "chromosome": "4", "start_pos": 98119866, "end_pos": 98111376, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042710.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042710.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034794.1", "url": "https://www.ensembl.org/id/ENSSSCP00000034794.1" } ] } }, { "isoform_ac": "F1SSX9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX9/entry#F1SSX9-1", "sequence": { "sequence": "MPRTPYFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPLSWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLTWRSQDMENCAVRGKLTDECYNYIRVLVPWNSQTLLACGTNSFSPMCRSYGITSLQQEGEELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDVLTFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPYRNTTVLFLGSSDGTVLKVLPPGGQSGAHEPILLEEIDAYSPSRCSGKRAAQTARRVIGLELDTEGHRLFVAFSGCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGTDVDPAGKQESMEVDDCQDGATGSQSGTGDSTYGVRRDLPPASASRSVPIPLLLACVAAAFAMGASVSGLLVSCACRRAHRHRSKDIESPGLPRPLSLRSLARLHGAGPEPPPPPKDGEGALTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRHPGGPWEWNQNGNNAKEGRGRTRGGNATGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEAEPPAAAPFTSRALPPEPTPSPTLFAGSCLLPRDCAPPRRLDVPPEGKGPAPAARPALSAPAPRLGVGGSRRLPFSTHRAPPALLTRVPSGGPSRYSGGAGKHLLYLGRPDGYRGRALKRVDVEKSQGPSKPPLVGPPSQQVVPNGSHFNF", "length": 934, "header": "tr|F1SSX9-1|F1SSX9_PIG Isoform 1 of Semaphorin-6C OS=Sus scrofa OX=9823 GN=SEMA6C PE=3 SV=4 CANONICAL=F1SSX9-1" }, "locus": { "chromosome": "4", "start_pos": 98119866, "end_pos": 98111376, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007271.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007271.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007076.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007076.4" } ] } }, { "isoform_ac": "I3LF43-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX9/entry#I3LF43-1", "sequence": { "sequence": "MPRTPYFMPLLLLLLLLSLPHTQAAFPQDPLPLLTSDLQGISPLSWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLTWRSQDMENCAVRGKLTDECYNYIRVLVPWNSQTLLACGTNSFSPMCRSYGITSLQQEGEELSGQARCPFDATQSNVAVFAEPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDVLTFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPYRNTTVLFLGSSDGTVLKVLPPGGQSGAHEPILLEEIDAYSPSRCSGKRAAQTARRVIGLELDTEGHRLFVAFSGCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRGPGGTDVDPAGKQESMEVDDCQDGATGSQSGTGDSTYVLLGRDPSPETPSPPSDAQPRPQSSTLGAHTQGVRRDLPPASASRSVPIPLLLACVAAAFAMGASVSGLLVSCACRRAHRHRSKDIESPGLPRPLSLRSLARLHGAGPEPPPPPKDGEGALTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRHPGGPWEWNQNGNNAKEGRGRTRGGNATGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKEAEPPAAAPFTSRALPPEPTPSPTLFAGSCLLPRDCAPPRRLDVPPEGKGPAPAARPALSAPAPRLGVGGSRRLPFSTHRAPPALLTRVPSGGPSRYSGGAGKHLLYLGRPDGYRGRALKRVDVEKSQGPSKPPLVGPPSQQVVPNGSHFNF", "length": 926, "header": "tr|I3LF43-1|F1SSX9_PIG Computationally mapped isoform of Semaphorin-6C OS=Sus scrofa OX=9823 GN=SEMA6C PE=3 SV=3 CANONICAL=F1SSX9-1" }, "locus": { "chromosome": "4", "start_pos": 98119866, "end_pos": 98111376, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025723.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025723.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022683.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022683.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 802, "start_aa": "Thr", "end_pos": 802, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr802", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LF43", "url": "https://www.uniprot.org/uniprotkb/I3LF43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153477", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153477", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AJG3-1", "protein_name": "Semaphorin 6C", "gene_name": "SEMA6C", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPPRAAAAPPLPLLVLVGPAALALSFPRDLEPRSAVGLSATASYPRFGGLRGDNGSAEFGIGFQRMLRLNGTLLVAARDHLYAFALGGDPTALYPHRSVTWEPRDRAGCAVRGEVQDGCHNHIRVLLPRDARTLFVCGTNAFSPVCRTYQALTLQQEGEELPGQARCPFDARQSIAATFADDRLYSATVADFQASDAVIYRSVRGPALRSIKYSSRWLREPHFVHAMPHGAHVYFFFREMAAELGLPGKVPVSRVGRVCRNDAGGSPRVLERRWTSFLKKRLQCAVPGDVPFHFDVLEAVTAPHTLHGQPAVLAVFGTQRNSIPGSAVCAFYLADVERAFEGPFADPRGAAAPWPPVPEERVPRPRPGCCAGMGSAAAIVTSGDIPDETLSFAKEHPLLHGAVVPAGGRPLFTQTGTRLTQLAVDVGAGPRGNHTVLFVGSEDGRVLKVLTAARRPGDNGQHGDTAGHGDGNGDNNGDNNGDGGTEAVLLEEIRLYEAGRCRGPRGASRVLGLELHPEGRELFVAFSGCIVRLPLSRCARHGQCRRSCLAARDPYCVWLPPGGCVPFSEDLPDGFEQDVEGSSGLTGTCAGAASAGDGDADNGDVAHRVRGAVPEAAVPVPVLVGCVLGAFVLGALVAGLGAACTRRPAAPKGAPEPPSPRPPPAPRLYPPLPPHSGAWDPHPELPSPEPSPEPPTRTPHGLSTPQPPGPGPPLRATLEGSGAAGWSLPPPGPMANRVQPGSSPFAPWDGAPRRLDVPPDSPPPPRRPLAQRHSLGGPGGAARPPGMARGLTRMYSLGAPGGAPPWGPHAIPLQRSLSMKPPLSTKPPLPPKPPPVP", "length": 837 }, "evidence": [ { "id": "F1SSX9", "url": "https://omabrowser.org/oma/group/F1SSX9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BG65-1", "protein_name": "Semaphorin-6C", "gene_name": "SEMA6C", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPRAPHFMPLLLLLLLSIPHTQAAFPQDPLPLLTSDLHGISPLSWFRGLEDDAVVAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKYLTWRSQDVENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEGEELSGQARCPFDATQSNVAVFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVHALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQALTGPVNLYGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDRVPSPRPGSCAGVGVAALFPSSRDLPDDVLTFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPYSNITVLFLGSNDGTVLKVLPPGGQSGGSEPILLEEIDAYSPSRCSGKRAAQTARRVIGLELDTEGHRLFVAFSGCIIYLPLSRCARHGACRRSCLASQDPYCGWDSSRGCVDIRAPGGIDVDPTGNQESMEHDDCQDGATGSQSGTGDSTYVLLSPGPSPETPSPPSDAHPRPQSSTLGAHTQGVRRDLPPASASRSVPIPLLLACVAAAFALGASVSGLLVSCACRRAHRRRSKDIESAGIPRPLSLRSLARLHGAGPEPPPPSKDGEGAQTPQLYTTFLPPPEGVPPPELACLPTPESTPELPVKHLRHAGGPWEWNQNGNNAKEGRSRARGGNAAGGAAPRVLVKPPPPGCPGQAVEVTTLEELLRYLHGPQAPRKEAEPPVAAPFTSRPLPPEPSPTLFAGPSLLPRDCAPPRRLDVPPEGKCPAPAARPALSAPAPRLGVGGSRKLPFSSHRAPPALLTRVPSGGPSRYSGGAGRHLLYLGRPEGHRGRALKRVEGREAPGAPEASLCRALLAGGRP", "length": 956 }, "evidence": [ { "id": "F1SSX9", "url": "https://omabrowser.org/oma/group/F1SSX9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9WTL3-1", "protein_name": "Semaphorin-6C", "gene_name": "Sema6c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRAPHSMPLLLLLLLSLPQAQTAFPQDPIPLLTSDLQGTSPSSWFRGLEDDAVAAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKFLTWRSQDMENCAVRGKLTDECYNYIRVLVPWDSQTLLACGTNSFSPVCRSYGITSLQQEGEELSGQARCPFDATQSTVAISAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVYALEHGDHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNLHGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDKVPSPRPGSCAGVGAAALFSSSQDLPDDVLLFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPHRNTTVLFLGSNDGTVLKVLPPGGQSLGPEPIILEEIDAYSHARCSGKRSPRAARRIIGLELDTEGHRLFVAFPGCIVYLSLSRCARHGACQRSCLASLDPYCGWHRFRGCVNIRGPGGTDVDLTGNQESMEHGDCQDGATGSQSGPGDSAYVLLGPGPSPETPSSPSDAHPGPQSSTLGAHTQGVRRDLSPASASRSIPIPLLLACVAAAFALGASVSGLLVSCACRRANRRRSKDIETPGLPRPLSLRSLARLHGGGPEPPPPPKDGDAAQTPQLYTTFLPPPEGGSPPELACLPTPETTPELPVKHLRASGGPWEWNQNGNNASEGPGRPRGCSAAGGPAPRVLVRPPPPGCPGQEVEVTTLEELLRYLHGPQPPRKGSEPLASAPFTSRPPASEPGAALFVDSSPMPRDCVPPLRLDVPPDGKRAAPSGRPALSAPAPRLGVSGSRRLPFPTHRAPPGLLTRVPSGGPSRYSGGPGRHLLYLGRPDGHRGRSLKRVDVKSPLSPKPPLATPPQPAPHGSHFNF", "length": 960 }, "evidence": [ { "id": "F1SSX9", "url": "https://omabrowser.org/oma/group/F1SSX9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9WTM3-1", "protein_name": "Semaphorin-6C", "gene_name": "Sema6c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRAPHSMPLLLLLLLLSSLPQAQAAFPQDPTPLLTSDLQGASPSSWFRGLEDDAVAAELGLDFQRFLTLNRTLLVAARDHVFSFDLQAQEEGEGLVPNKFLTWRSQDMENCAVRGKLTDECYNYIRVLVPWNSQTLLACGTNSFSPMCRSYGITSLQQEGEELSGQARCPFDATQSTVAIFAEGSLYSATAADFQASDAVVYRSLGPQPPLRSAKYDSKWLREPHFVYALEHGEHVYFFFREVSVEDARLGRVQFSRVARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQSLTGPVNLHGRSALFGVFTTQTNSIPGSAVCAFYLDDIERGFEGKFKEQRSLDGAWTPVSEDKVPSPRPGSCAGVGAAASFSSSQDLPDDVLLFIKAHPLLDPAVPPATHQPLLTLTSRALLTQVAVDGMAGPHRNTTVLFLGSNDGTVLKVLPPGGQSLGSEPIVLEEIDAYSHARCSGKRSPRAARRIIGLELDTEGHRLFVAFPGCIVYLSLSRCARHGACQRSCLASLDPYCGWHRSRGCMSIRGPGGTDVDLTGNQESTEHGDCQDGATGSQSGPGDSAYGVRRDLSPASASRSIPIPLLLACVAAAFALGASVSGLLVSCACRRANRRRSKDIETPGLPRPLSLRSLARLHGGGPEPPPPPKDGDAAQTPQLYTTFLPPPDGGSPPELACLPTPETTPELPVKHLRASGGPWEWNQNGNNASEGPGRPPRGCSGAGGPAPRVLVRPPPPGCPGQAVEVTTLEELLRYLHGPQPPRKGSEPLASAPFTSRPPASEPGASLFVDSSPMPRDGVPPLRLDVPPEGKRAAPSGRPALSAPAPRLGVGGSRRLPFPTHRAPPGLLTRVPSGGPARYSGGPGRHLLYLGRPEGHRGRSLKRVDVKSPLSPKPPLASPPQPAPHGGHFNF", "length": 931 }, "evidence": [ { "id": "F1SSX9", "url": "https://omabrowser.org/oma/group/F1SSX9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "semaphorin receptor binding", "id": "GO:0030215", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030215", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" }, { "name": "chemorepellent activity", "id": "GO:0045499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045499", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" }, { "name": "semaphorin-plexin signaling pathway", "id": "GO:0071526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071526", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" }, { "name": "neural crest cell migration", "id": "GO:0001755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001755", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" }, { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SSX9", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" }, { "start_pos": 739, "end_pos": 741, "annotation": "n_glycosylation_sequon" }, { "start_pos": 928, "end_pos": 930, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSX9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX9" }, { "id": "PS51004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sema", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 516, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 802 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 286, "end_pos": 288 }, { "start_pos": 437, "end_pos": 439 }, { "start_pos": 70, "end_pos": 72 }, { "start_pos": 739, "end_pos": 741 }, { "start_pos": 928, "end_pos": 930 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PWW7-1", "uniprot_ac": "F6PWW7", "uniprot_id": "F6PWW7_PIG", "mass": { "chemical_mass": 31260.0, "monoisotopic_mass": 31260.0 }, "refseq": {}, "gene_names": [ { "name": "HLA-DOB", "type": "recommended", "evidence": [ { "id": "F6PWW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ] } ], "protein_names": [ { "name": "MHC class II, DO beta", "type": "synonym", "evidence": [ { "id": "F6PWW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PWW7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HLA-DOB", "url": "https://www.uniprot.org/uniprotkb/F6PWW7", "locus": { "chromosome": "7", "start_pos": 25030438, "end_pos": 25037962, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001459", "url": "https://www.ensembl.org/id/ENSSSCG00000001459" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001459", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001459", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014745", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014745", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DIKITWF", "url": "https://omabrowser.org/oma/group/DIKITWF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR19944", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19944", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19944:SF43", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19944:SF43", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00969", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00969", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2132295", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0ABB5UPZ3", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPZ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPZ3-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPZ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQ22", "url": "https://www.uniprot.org/uniprotkb/F1RQ22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RQ22-1", "url": "https://www.uniprot.org/uniprotkb/F1RQ22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PWW7-1", "url": "https://www.uniprot.org/uniprotkb/F6PWW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIYTTSFSFSPSRMGSSWVPWVVALLVTVIRLDSSMTQGRDSPEDFVIQAKADCYFTNGTQRVQFVVRFIFNLEEFVRFDSDLGKFVALTELGQPDAELWNSRPDILESSRASVDVLCRRNYWLGAPLTVERKVQPEVTVHPERTPSLQLRNLLLCSVTGFYPGAIEIRWFRNGQEQREGVLATGLIRNGDWTFQTVVMLEMTPELGDVYTCLVDHPSLLSPVSVEWRAQSDCSWTKLLIGVAAFLGGLTFLLVGIIIHVRARKGRVETQLSGDEPH", "length": 277, "header": "tr|F6PWW7-1|F6PWW7_PIG Isoform 1 of MHC class II, DO beta OS=Sus scrofa OX=9823 GN=HLA-DOB PE=4 SV=3 CANONICAL=F6PWW7-1" }, "isoforms": [ { "isoform_ac": "A0ABB5UPZ3-1", "url": "https://www.uniprot.org/uniprotkb/F6PWW7/entry#A0ABB5UPZ3-1", "sequence": { "sequence": "MLSCGTVDQISWRAAEHLWMCSADVTTGWVRPSPWREKGSTQGPSRSGGSGTGRSRERGSWPLASSGMETGPFRQW", "length": 76, "header": "tr|A0ABB5UPZ3-1|A0ABB5UPZ3_PIG Computationally mapped isoform of MHC class II, DO beta OS=Sus scrofa OX=9823 GN=HLA-DOB PE=4 SV=1 CANONICAL=F6PWW7-1" }, "locus": { "chromosome": "7", "start_pos": 25033626, "end_pos": 25032876, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107082.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107082.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081481.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081481.1" } ] } }, { "isoform_ac": "F1RQ22-1", "url": "https://www.uniprot.org/uniprotkb/F6PWW7/entry#F1RQ22-1", "sequence": { "sequence": "MLEMTPELGDVYTCLVDHPSLLSPVSVEWRAQSDCSWTKLLIGVAAFLGGLTFLLVGIIIHVRARKGRVETQLSGDEPH", "length": 79, "header": "tr|F1RQ22-1|F6PWW7_PIG Computationally mapped isoform of MHC class II, DO beta OS=Sus scrofa OX=9823 GN=HLA-DOB PE=4 SV=3 CANONICAL=F6PWW7-1" }, "locus": { "chromosome": "7", "start_pos": 25032873, "end_pos": 25031468, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001619.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001619.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001577.3", "url": "https://www.ensembl.org/id/ENSSSCP00000001577.3" } ] } }, { "isoform_ac": "F6PWW7-1", "url": "https://www.uniprot.org/uniprotkb/F6PWW7/entry#F6PWW7-1", "sequence": { "sequence": "MIYTTSFSFSPSRMGSSWVPWVVALLVTVIRLDSSMTQGRDSPEDFVIQAKADCYFTNGTQRVQFVVRFIFNLEEFVRFDSDLGKFVALTELGQPDAELWNSRPDILESSRASVDVLCRRNYWLGAPLTVERKVQPEVTVHPERTPSLQLRNLLLCSVTGFYPGAIEIRWFRNGQEQREGVLATGLIRNGDWTFQTVVMLEMTPELGDVYTCLVDHPSLLSPVSVEWRAQSDCSWTKLLIGVAAFLGGLTFLLVGIIIHVRARKGRVETQLSGDEPH", "length": 277, "header": "tr|F6PWW7-1|F6PWW7_PIG Isoform 1 of MHC class II, DO beta OS=Sus scrofa OX=9823 GN=HLA-DOB PE=4 SV=3 CANONICAL=F6PWW7-1" }, "locus": { "chromosome": "7", "start_pos": 25037892, "end_pos": 25031468, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001628.6", "url": "https://www.ensembl.org/id/ENSSSCT00000001628.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001586.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001586.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1RQ22", "url": "https://www.uniprot.org/uniprotkb/F1RQ22" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2132295", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2132295", "resource": "Reactome", "description": "MHC class II antigen presentation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MPT5-1", "protein_name": "HLA class II histocompatibility antigen, DO beta chain", "gene_name": "LOC103161518", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGAGRAPWVVALLVNLMRPDSFMSEGRGPPEDFVIQAKADCYFTNGTEKVRFVVRFIFNLEEYLHFDSDLGVFVALTELGEPDAEQWNKRWDLLEQSRASVNLVCRQNYKLGAPFTVEREVPPEVTVFPERTPLLQQHNLLFCSVTGFYPGDIKVRWFRNGQEERSGVMSTGLVRNGDWTFQMTVMLEMTPELGDTYSCLVEHPSLESPVSVEWMAQSEYSWKKILSGGVAFLLGLIVFLVGVVIHLKARKASVETQSVHEVSRAFPHHPQ", "length": 271 }, "evidence": [ { "id": "F6PWW7", "url": "https://omabrowser.org/oma/group/F6PWW7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O35424-1", "protein_name": "Histocompatibility 2, O region beta locus", "gene_name": "H2-Ob", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGAGRAPWVVALLVNLMRLDSFMIEGRDSPENFVIQAKADCYFTNGTEKVHLLVRFIFNLEEYLHFDSDLGMFVALTELGEPDADQWNKRLDLLETSRAAVNMVCRQKYKLGAPFTVERNVPPEVTVYPERTPLLQQHNLLLCSVTGFYPGDISVKWFRNGQEERSGVMSTGLVRNGDWTFQTTVMLEMIPELGDIYSCLVEHPGLLRPVSVAWMAQSEYSWKKILSGAAVFLLGLIVFLVGVVIHLKAQKASVETQPGNEASRESLHSQP", "length": 271 }, "evidence": [ { "id": "F6PWW7", "url": "https://omabrowser.org/oma/group/F6PWW7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13765-1", "protein_name": "HLA class II histocompatibility antigen, DO beta chain", "gene_name": "HLA-DOB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGSGWVPWVVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDSDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVYPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLEMTPELGHVYTCLVDHSSLLSPVSVEWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLRAQKGYVRTQMSGNEVSRAVLLPQSC", "length": 273 }, "evidence": [ { "id": "F6PWW7", "url": "https://omabrowser.org/oma/group/F6PWW7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" }, { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" }, { "name": "MHC class II protein complex", "id": "GO:0042613", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042613", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "antigen processing and presentation of exogenous peptide antigen via MHC class II", "id": "GO:0019886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019886", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" }, { "name": "peptide antigen assembly with MHC class II protein complex", "id": "GO:0002503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002503", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" }, { "name": "positive regulation of T cell activation", "id": "GO:0050870", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050870", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" }, { "name": "positive regulation of immune response", "id": "GO:0050778", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050778", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" }, { "name": "negative regulation of antigen processing and presentation of peptide antigen via MHC class II", "id": "GO:0002587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002587", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "MHC class II protein complex binding", "id": "GO:0023026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0023026", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" }, { "name": "peptide antigen binding", "id": "GO:0042605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042605", "evidence": [ { "database": "UniProtKB", "id": "F6PWW7", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 58, "end_pos": 60, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F6PWW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PWW7" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 224, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 58, "end_pos": 60 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L7A4-1", "uniprot_ac": "I3L7A4", "uniprot_id": "I3L7A4_PIG", "mass": { "chemical_mass": 51693.0, "monoisotopic_mass": 51693.0 }, "refseq": { "ac": "XP_003123276", "name": "noelin-2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123276" }, "gene_names": [ { "name": "OLFM2", "type": "recommended", "evidence": [ { "id": "I3L7A4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" } ] }, { "name": "OLFM2", "type": "synonym", "evidence": [ { "id": "XP_003123276", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123276" } ] } ], "protein_names": [ { "name": "Olfactomedin 2", "type": "synonym", "evidence": [ { "id": "I3L7A4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7A4/entry#names_and_taxonomy" } ] }, { "name": "noelin-2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003123276", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123276" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L7A4", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OLFM2", "url": "https://www.uniprot.org/uniprotkb/I3L7A4", "locus": { "chromosome": "2", "start_pos": 68734081, "end_pos": 68807191, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027434", "url": "https://www.ensembl.org/id/ENSSSCG00000027434" } ] } } ], "crossref": [ { "id": "ENSSSCG00000027434", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027434", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512648", "url": "https://www.ncbi.nlm.nih.gov/gene/100512648", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512648", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512648", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HQVVYNV", "url": "https://omabrowser.org/oma/group/HQVVYNV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1S3G6", "url": "https://www.orthodb.org/?gene=F1S3G6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3L7A4", "url": "https://www.orthodb.org/?gene=I3L7A4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23192:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23192:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12308", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12308", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003123276", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003123276", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1S3G6", "url": "https://www.uniprot.org/uniprotkb/F1S3G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S3G6-1", "url": "https://www.uniprot.org/uniprotkb/F1S3G6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7A4", "url": "https://www.uniprot.org/uniprotkb/I3L7A4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7A4-1", "url": "https://www.uniprot.org/uniprotkb/I3L7A4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWPLTVPPPPPLLLLLLCSGLAGQTLFQSPEEGWQLYTSAQAPDGKCICTAVIPAQSTCSRDGRSRELRQLMEKVQNVSQSMEVLELRTYRDLQYVRSMETLMRSLDARLRAADGSLSAKSFQELKDRMTELLPLSSVLEQYKADTRTIVRLREEVRNLSGSLAAIQEEMGAYGYEDLQQRVMALEARLHACAQKLGCGKLTGVSNPITIRAMGSRFGSWMTDTMAPSSDTRVWYMDGYYKGRRVLEFRTLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPGAGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVVRSWDTGYPKRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTAGDP", "length": 457, "header": "tr|I3L7A4-1|I3L7A4_PIG Isoform 1 of Olfactomedin 2 OS=Sus scrofa OX=9823 GN=OLFM2 PE=4 SV=1 CANONICAL=I3L7A4-1" }, "isoforms": [ { "isoform_ac": "F1S3G6-1", "url": "https://www.uniprot.org/uniprotkb/I3L7A4/entry#F1S3G6-1", "sequence": { "sequence": "MSVPLLKIGAVLSTMAMVTNWMSQTLPSLVGLNGTVSRAGASEKITLFQSPEEGWQLYTSAQAPDGKCICTAVIPAQSTCSRDGRSRELRQLMEKVQNVSQSMEVLELRTYRDLQYVRSMETLMRSLDARLRAADGSLSAKSFQELKDRMTELLPLSSVLEQYKADTRTIVRLREEVRNLSGSLAAIQEEMGAYGYEDLQQRVMALEARLHACAQKLGCGKLTGVSNPITIRAMGSRFGSWMTDTMAPSSDTRVWYMDGYYKGRRVLEFRTLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPGAGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVVRSWDTGYPKRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTAGDP", "length": 478, "header": "tr|F1S3G6-1|I3L7A4_PIG Computationally mapped isoform of Olfactomedin 2 OS=Sus scrofa OX=9823 GN=OLFM2 PE=4 SV=3 CANONICAL=I3L7A4-1" }, "locus": { "chromosome": "2", "start_pos": 68789574, "end_pos": 68734570, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014932.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014932.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014531.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014531.3" } ] } }, { "isoform_ac": "I3L7A4-1", "url": "https://www.uniprot.org/uniprotkb/I3L7A4/entry#I3L7A4-1", "sequence": { "sequence": "MWPLTVPPPPPLLLLLLCSGLAGQTLFQSPEEGWQLYTSAQAPDGKCICTAVIPAQSTCSRDGRSRELRQLMEKVQNVSQSMEVLELRTYRDLQYVRSMETLMRSLDARLRAADGSLSAKSFQELKDRMTELLPLSSVLEQYKADTRTIVRLREEVRNLSGSLAAIQEEMGAYGYEDLQQRVMALEARLHACAQKLGCGKLTGVSNPITIRAMGSRFGSWMTDTMAPSSDTRVWYMDGYYKGRRVLEFRTLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPGAGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVVRSWDTGYPKRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTAGDP", "length": 457, "header": "tr|I3L7A4-1|I3L7A4_PIG Isoform 1 of Olfactomedin 2 OS=Sus scrofa OX=9823 GN=OLFM2 PE=4 SV=1 CANONICAL=I3L7A4-1" }, "locus": { "chromosome": "2", "start_pos": 68807055, "end_pos": 68734570, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024704.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024704.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019908.1", "url": "https://www.ensembl.org/id/ENSSSCP00000019908.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1S3G6", "url": "https://www.uniprot.org/uniprotkb/F1S3G6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512648", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512648", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TZ02-1", "protein_name": "Olfactomedin 2", "gene_name": "OLFM2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSVPLLKIGAVLSTMAMVTNWMSQTLPSLVGLNGTVSRAGASEKITLFQSPEEGWQLYTSAQAPDGKCICTAVIPAQSTCSRDGRSRELRQLMEKVQNVSQSMEVLELRTYRDLQYVRSMETLMRSLDARLRAADGSLSAKSFQELKDRMTELLPLSSVLEQYKADTRTIVRLREEVRNLSGSLATIQEEMGAYGYEDLQQRVMALEARLHACAQKLGCGKLTGVSNPITIRAMGSRFGSWMTDTMAPSADSRVWYMDGYYKGRRVLEFRTLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPGAGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVVRSWDTGYPKRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTAGDP", "length": 478 }, "evidence": [ { "id": "I3L7A4", "url": "https://omabrowser.org/oma/group/I3L7A4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1R5K6-1", "protein_name": "Noelin-2a isoform X1", "gene_name": "olfm2a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSVPLLKIGAVLSTMAMVTNWMSQTLPSLVGLNGTTISRAGTSERIVSALYPSPEEGWQIYSSAQDADGKCICTVVAPAQNMCNRDPRSRQLRQLMEKVQNITQSMEVLDLRTYRDLQYVRDTENLMKTVDGKLKTASENPRSLNPKSFQELKDKVTQLLPLLPVLEQYKADARMILRLREEVRNLSLVLMAIQEEMGAYDYEELRQRVLLLETRLHSCMQKLGCGKLTGVSNPITVRASGSRFGSWMTDTMIPSSDNRVWSMDGYFKGRRVLEYRTMNDFMKGQNFVQHLLPHPWAGTGHVVYNGSLYYNKYQSNILIKYHFRSRSVLVQRSLSGAGYNNTFPYSWGGSSDIDLMADENGLWAVYTTIPNAGNIVISRLEPQSLEVLQTWDTGFPKRSAGESFMICGTLYVTNSHLAGAKIYFAYYTNTSTYEYTDIPFHNQYSHISMMDYNPRERVLYTWNNGHQVLYNVTLFQVIKTAED", "length": 483 }, "evidence": [ { "id": "I3L7A4", "url": "https://omabrowser.org/oma/group/I3L7A4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O95897-1", "protein_name": "Noelin-2", "gene_name": "OLFM2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWPLTVPPPLLLLLCSGLAGQTLFQNPEEGWQLYTSAQAPDGKCICTAVIPAQSTCSRDGRSRELRQLMEKVQNVSQSMEVLELRTYRDLQYVRGMETLMRSLDARLRAADGSLSAKSFQELKDRMTELLPLSSVLEQYKADTRTIVRLREEVRNLSGSLAAIQEEMGAYGYEDLQQRVMALEARLHACAQKLGCGKLTGVSNPITVRAMGSRFGSWMTDTMAPSADSRVWYMDGYYKGRRVLEFRTLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPGAGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVMRSWDTGYPKRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTSGDP", "length": 454 }, "evidence": [ { "id": "I3L7A4", "url": "https://omabrowser.org/oma/group/I3L7A4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q568Y7-1", "protein_name": "Noelin-2", "gene_name": "Olfm2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVPLLKIGAVLSTMAMVTNWMSQTLPSLVGLNSTVSRAGSSEKITLFQSPEEGWQLYTSAQAPDGKCICTAVIPAQSTCARDGRSRELRQLMEKVQNVSQSMEVLELRTYRDLQYVRSMETLMRSLDARLRTADGSVSAKSFQELKDRMTELLPLSSVLEQYKADTRTIVRLREEVRNLSGNLAAIQEEMGAYGYEDLQQRVMALEARLHACAQKLGCGKLTGVSNPITIRAMGSRFGSWMTDTMAPSADSRVWYMDGYYKGRRVLEFRTLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPGAGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVVRSWDTGYPKRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTAGDP", "length": 478 }, "evidence": [ { "id": "I3L7A4", "url": "https://omabrowser.org/oma/group/I3L7A4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BM13-1", "protein_name": "Noelin-2", "gene_name": "Olfm2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRKLRQTGTTIAGGQTLFQSPEEGWQLYTSAQAPDGKCVCTAVIPAQSTCARDGRSRELRQLMEKVQNVSQSMEVLELRTFRDLQYVRSMETLMRSLDARLRAADGSVSAKSFQELKDRMTELLPLSSVLEQYKADTRTIVRLREEVRNLSGNLAAIQEEMGAYGYEDLQQRVMALEARLHACAQKLGCGKLTGVSNPITIRAMGSRFGSWMTDTMAPSADSRVWYMDGYYKGRRVLEFRTLGDFIKGQNFIQHLLPQPWAGTGHVVYNGSLFYNKYQSNVVVKYHFRSRSVLVQRSLPGAGYNNTFPYSWGGFSDMDFMVDESGLWAVYTTNQNAGNIVVSRLDPHTLEVVRSWDTGYPKRSAGEAFMICGVLYVTNSHLAGAKVYFAYFTNTSSYEYTDVPFHNQYSHISMLDYNPRERALYTWNNGHQVLYNVTLFHVISTAGDP", "length": 448 }, "evidence": [ { "id": "I3L7A4", "url": "https://omabrowser.org/oma/group/I3L7A4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "I3L7A4", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "I3L7A4", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L7A4", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "I3L7A4", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "I3L7A4", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "I3L7A4", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" } ], "pmid": "" }, { "name": "positive regulation of smooth muscle cell differentiation", "id": "GO:0051152", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051152", "evidence": [ { "database": "UniProtKB", "id": "I3L7A4", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 313, "end_pos": 315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L7A4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7A4" }, { "id": "PS51132", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51132" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Olfactomedin-like", "eco_id": "ECO_0000259", "start_pos": 197, "end_pos": 449, "start_aa": "Gly", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 158, "end_pos": 160 }, { "start_pos": 278, "end_pos": 280 }, { "start_pos": 313, "end_pos": 315 }, { "start_pos": 402, "end_pos": 404 }, { "start_pos": 444, "end_pos": 446 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQR7-1", "uniprot_ac": "F1SQR7", "uniprot_id": "F1SQR7_PIG", "mass": { "chemical_mass": 72270.0, "monoisotopic_mass": 72270.0 }, "refseq": { "ac": "XP_001925096", "name": "histidine ammonia-lyase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925096" }, "gene_names": [ { "name": "HAL", "type": "recommended", "evidence": [ { "id": "F1SQR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQR7" } ] }, { "name": "HAL", "type": "synonym", "evidence": [ { "id": "XP_001925096", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925096" } ] } ], "protein_names": [ { "name": "Histidine ammonia-lyase", "type": "recommended", "evidence": [ { "id": "F1SQR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQR7/entry#names_and_taxonomy" } ] }, { "name": "4.3.1.3", "type": "synonym", "evidence": [ { "id": "F1SQR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQR7/entry#names_and_taxonomy" } ] }, { "name": "histidine ammonia-lyase", "type": "synonym", "evidence": [ { "id": "XP_001925096", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925096" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQR7", "url": "https://www.uniprot.org/uniprotkb/F1SQR7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HAL", "url": "https://www.uniprot.org/uniprotkb/F1SQR7", "locus": { "chromosome": "5", "start_pos": 87547455, "end_pos": 87522542, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000892", "url": "https://www.ensembl.org/id/ENSSSCG00000000892" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000892", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000892", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00332", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00332", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154617", "url": "https://www.ncbi.nlm.nih.gov/gene/100154617", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005921", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005921", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008948", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008948", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021922", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021922", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154617", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154617", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YSLRCMP", "url": "https://omabrowser.org/oma/group/YSLRCMP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQR7", "url": "https://www.orthodb.org/?gene=F1SQR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10362", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10362", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12053", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12053", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70921", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70921", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925096", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925096", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "21232", "url": "https://www.rhea-db.org/rhea/21232", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZND0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZND0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZND0-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZND0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGX7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ33", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ33", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQ33-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQ33-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQR7", "url": "https://www.uniprot.org/uniprotkb/F1SQR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRYTVHVRGEWLAVPCGDAQLTVGWLGREAVRRYIRNKPDNGGFASVDDVRFLVRRCKGLGLLDHEDLLEVALEDNEFVEVVIEGDAMSPDFIPSQPEGVYLYSKYREPEKYIALDGDSLTTEDLVSLGKGHYKIKLTPTAEKKVQKSREVIDSIVKEKTVVYGITTGFGKFARTVIPVSKLEELQVNLVRSHSSGVGKPLIPERCRMLLALRINVLAKGYSGISLETLKQVIEVFNASCLPYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLAAHGLKPIVLKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQVEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVANDTIAFVKHIITTEINSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGIHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVVEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLEQKVWEVAAPYIEKYRMEHIPESRPVSPTAFSLEFLHKKSPKIPESEDL", "length": 657, "header": "tr|F1SQR7-1|F1SQR7_PIG Isoform 1 of Histidine ammonia-lyase OS=Sus scrofa OX=9823 GN=HAL PE=1 SV=3 CANONICAL=F1SQR7-1" }, "isoforms": [ { "isoform_ac": "A0A286ZND0-1", "url": "https://www.uniprot.org/uniprotkb/F1SQR7/entry#A0A286ZND0-1", "sequence": { "sequence": "MPRYTVHVRGEWLAVPCGDAQLTVGWLGREAVRRYIRNKPDNGGFASVDDVRFLVRRCKGLGLLDHEDLLEVALEDNEFVEVVIEGDAMSPDFIPSQPEGVYLYSKYREPEKYIALDGDSLTTEDLVSLGKGHYKIKLTPTAEKKVQKSREVIDSIVKEKTVVYGITTGFGKFARTVIPVSKLEELQVNLVRSHSSGVGKPLIPERCRMLLALRINVLAKGYSGISLETLKQVIEVFNASCLPYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLAAHGLKPIVLKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTESHRFCDRVQDAYTLRCCPQVHGVANDTIAFVKHIITTEINSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGIHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVVEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLEQKVWEVAAPYIEKYRMEHIPESRPVSPTAFSLEFLHKKSPKIPESEDL", "length": 625, "header": "tr|A0A286ZND0-1|F1SQR7_PIG Computationally mapped isoform of Histidine ammonia-lyase OS=Sus scrofa OX=9823 GN=HAL PE=1 SV=1 CANONICAL=F1SQR7-1" }, "locus": { "chromosome": "5", "start_pos": 87546363, "end_pos": 87522880, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052080.3", "url": "https://www.ensembl.org/id/ENSSSCT00000052080.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032962.1", "url": "https://www.ensembl.org/id/ENSSSCP00000032962.1" } ] } }, { "isoform_ac": "A0A5G2QGX7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQR7/entry#A0A5G2QGX7-1", "sequence": { "sequence": "MPRYTVHVRGEWLAVPCGDAQLTVGWLGREAVRRYIRNKPDNGGFASVDDVRFLVRRCKGLGLLDHEDLLEVALEDNEFVEVVIEGDAMSPDFIPSQPEGVYLYSKYREPEKYIALDGDSLTTEDLVSLGKGHYKIKLTPTAEKKVQKSREVIDSIVKEKTVVYGITTGFGKFARTVIPVSKLEELQVNLVRSHSSGVGKPLIPERCRMLLALRINVLAKGYSGISLETLKQVIEVFNASCLPYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLAAHGLKPIVLKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQVEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVANDTIAFVKHIITTEINSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGIHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVVEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRFGKW", "length": 592, "header": "tr|A0A5G2QGX7-1|F1SQR7_PIG Computationally mapped isoform of Histidine ammonia-lyase OS=Sus scrofa OX=9823 GN=HAL PE=1 SV=1 CANONICAL=F1SQR7-1" }, "locus": { "chromosome": "5", "start_pos": 87546238, "end_pos": 87522880, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000073930.2", "url": "https://www.ensembl.org/id/ENSSSCT00000073930.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061267.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061267.1" } ] } }, { "isoform_ac": "A0A5G2QQ33-1", "url": "https://www.uniprot.org/uniprotkb/F1SQR7/entry#A0A5G2QQ33-1", "sequence": { "sequence": "MPRYTVHVRGEWLAVPCGDAQLTVGWLGREAVRRYIRNKPDNGGFASVDDVRFLVRRCKGLGLLDHEDLLEVALEDNEFVEVVIEGDAMSPDFIPSQPEGVYLYSKYREPEKYIALDGDSLTTEDLVSLGKGHYKIKLTPTAEKKVQKSREVIDSIVKEKTVVYGITTGFGKFARTVIPVSVGKPLIPERCRMLLALRINVLAKGYSGISLETLKQVIEVFNASCLPYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLAAHGLKPIVLKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQVEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVANDTIAFVKHIITTEINSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGIHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVVEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLEQKVWEVAAPYIEKYRMEHIPESRPVSPTAFSLEFLHKKSPKIPESEDL", "length": 641, "header": "tr|A0A5G2QQ33-1|F1SQR7_PIG Computationally mapped isoform of Histidine ammonia-lyase OS=Sus scrofa OX=9823 GN=HAL PE=1 SV=1 CANONICAL=F1SQR7-1" }, "locus": { "chromosome": "5", "start_pos": 87546363, "end_pos": 87522880, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088546.2", "url": "https://www.ensembl.org/id/ENSSSCT00000088546.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066171.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066171.1" } ] } }, { "isoform_ac": "F1SQR7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQR7/entry#F1SQR7-1", "sequence": { "sequence": "MPRYTVHVRGEWLAVPCGDAQLTVGWLGREAVRRYIRNKPDNGGFASVDDVRFLVRRCKGLGLLDHEDLLEVALEDNEFVEVVIEGDAMSPDFIPSQPEGVYLYSKYREPEKYIALDGDSLTTEDLVSLGKGHYKIKLTPTAEKKVQKSREVIDSIVKEKTVVYGITTGFGKFARTVIPVSKLEELQVNLVRSHSSGVGKPLIPERCRMLLALRINVLAKGYSGISLETLKQVIEVFNASCLPYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLAAHGLKPIVLKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQVEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVANDTIAFVKHIITTEINSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGIHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVVEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLEQKVWEVAAPYIEKYRMEHIPESRPVSPTAFSLEFLHKKSPKIPESEDL", "length": 657, "header": "tr|F1SQR7-1|F1SQR7_PIG Isoform 1 of Histidine ammonia-lyase OS=Sus scrofa OX=9823 GN=HAL PE=1 SV=3 CANONICAL=F1SQR7-1" }, "locus": { "chromosome": "5", "start_pos": 87546363, "end_pos": 87522880, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000976.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000976.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000955.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000955.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZND0", "url": "https://www.uniprot.org/uniprotkb/A0A286ZND0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154617", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154617", "resource": "KEGG Pathway" }, { "id": "R-SSC-70921", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70921", "resource": "Reactome", "description": "Histidine catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2L7Q6-1", "protein_name": "Histidine ammonia-lyase", "gene_name": "Hal", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPRYTVHVRGEWLAVPCQDGKLTVGWLGREAVRRYMKNKPDNGGFASVDEVSFLVRRCKGLGLLDNEDMLEVALEDNEFVEVVIEGDIMSPDFIPSQPEGVFLYSKYREPERYIALDGDSLSTEDLVNLGKGHYKIKLTSTAEKKVQQSREVIDSIIKEKTVVYGITTGFGKFARTVIPVHKLQELQVNLVRSHSSGVGKPLSPERCRMLLALRINVLAKGYSGISLETLKQVIEAFNASCLSYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLEAHGLKPVVLKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIAFVKDIITTELNSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVIEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLEQKVWEVAAPYIEKYRMEHIPESRPLSPTAFSLESLRKNSVTIPESDDL", "length": 657 }, "evidence": [ { "id": "F1SQR7", "url": "https://omabrowser.org/oma/group/F1SQR7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A7YWP4-1", "protein_name": "Histidine ammonia-lyase", "gene_name": "HAL", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPRYTVHVRGEWLAVPCQDAQLTVGWLGREAVRRYIKNKPDNGGFASVDDARFLVRRCKGLGLLDNEDPLDVALEDNEFVEVVIEGDAMSPDFIPSQPEGVYLYSKYREPEKYIALDGDSLTTEDLVSLGKGHYKIKLTPTAEKRVQKSREVIDRIVEEKTVVYGITTGFGKFARTVIPVSKLEELQFNLVRSHSSGVGKPLSPERCRMLLALRINVLAKGYSGISLGTLKQVIEVFNASCLPYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLAAHGLKPIVLKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQVEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIAFVKNIITTEINSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELASISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVIEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLVEQKVWEVAAPYIEKYRMEHIPESRPVSPTAFSLEFLHKKSTKIPESEDL", "length": 657 }, "evidence": [ { "id": "F1SQR7", "url": "https://omabrowser.org/oma/group/F1SQR7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P21213-1", "protein_name": "Histidine ammonia-lyase", "gene_name": "Hal", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRYTVHVRGEWLAVPCQDGKLSVGWLGREAVRRYMKNKPDNGGFTSVDEVRFLVRRCKGLGLLDNEDLLEVALEDNEFVEVVIEGDVMSPDFIPSQPEGVFLYSKYREPEKYIALDGDSLSTEDLVNLGKGHYKIKLTSIAEKKVQQSREVIDSIIKERTVVYGITTGFGKFARTVIPANKLQELQVNLVRSHSSGVGKPLSPERCRMLLALRINVLAKGYSGISLETLKQVIEVFNASCLSYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLEAHGLKPIVLKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIAFVKDIITTELNSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSESKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVIEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLDQKVWEVAAPYIEKYRMEHIPESRPLSPTAFSLESLRKNSATIPESDDL", "length": 657 }, "evidence": [ { "id": "F1SQR7", "url": "https://omabrowser.org/oma/group/F1SQR7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P35492-1", "protein_name": "Histidine ammonia-lyase", "gene_name": "Hal", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRYTVHVRGEWLAVPCQDGKLTVGWLGREAVRRYMKNKPDNGGFTSVDEVQFLVHRCKGLGLLDNEDELEVALEDNEFVEVVIEGDVMSPDFIPSQPEGVFLYSKYREPEKYIALDGDSLSTEDLVNLGKGRYKIKLTSIAEKKVQQSREVIDSIIKERTVVYGITTGFGKFARTVIPANKLQELQVNLVRSHSSGVGKPLSPERCRMLLALRINVLAKGYSGISLETLKQVIEAFNASCLSYVPEKGTVGASGDLAPLSHLALGLIGEGKMWSPKSGWADAKYVLEAHGLKPIVLKPKEGLALINGTQMITSLGCEALERASAIARQADIVAALTLEVLKGTTKAFDTDIHAVRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIAFVKDIITTELNSATDNPMVFASRGETISGGNFHGEYPAKALDYLAIGVHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSESKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVVEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLDQKVWEVAAPYIEKYRMEHIPESRPLSPTAFSLESLRKNSATIPESDDL", "length": 657 }, "evidence": [ { "id": "F1SQR7", "url": "https://omabrowser.org/oma/group/F1SQR7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P35510-1", "protein_name": "Phenylalanine ammonia-lyase 1", "gene_name": "PAL1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEINGAHKSNGGGVDAMLCGGDIKTKNMVINAEDPLNWGAAAEQMKGSHLDEVKRMVAEFRKPVVNLGGETLTIGQVAAISTIGNSVKVELSETARAGVNASSDWVMESMNKGTDSYGVTTGFGATSHRRTKNGVALQKELIRFLNAGIFGSTKETSHTLPHSATRAAMLVRINTLLQGFSGIRFEILEAITSFLNNNITPSLPLRGTITASGDLVPLSYIAGLLTGRPNSKATGPNGEALTAEEAFKLAGISSGFFDLQPKEGLALVNGTAVGSGMASMVLFETNVLSVLAEILSAVFAEVMSGKPEFTDHLTHRLKHHPGQIEAAAIMEHILDGSSYMKLAQKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRYATKSIEREINSVNDNPLIDVSRNKAIHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTSEAVDILKLMSTTFLVAICQAVDLRHLEENLRQTVKNTVSQVAKKVLTTGVNGELHPSRFCEKDLLKVVDREQVYTYADDPCSATYPLIQKLRQVIVDHALINGESEKNAVTSIFHKIGAFEEELKAVLPKEVEAARAAYDNGTSAIPNRIKECRSYPLYRFVREELGTELLTGEKVTSPGEEFDKVFTAICEGKIIDPMMECLNEWNGAPIPIC", "length": 725 }, "evidence": [ { "id": "F1SQR7", "url": "https://omabrowser.org/oma/group/F1SQR7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P42357-1", "protein_name": "Histidine ammonia-lyase", "gene_name": "HAL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPRYTVHVRGEWLAVPCQDAQLTVGWLGREAVRRYIKNKPDNGGFTSVDDAHFLVRRCKGLGLLDNEDRLEVALENNEFVEVVIEGDAMSPDFIPSQPEGVYLYSKYREPEKYIELDGDRLTTEDLVNLGKGRYKIKLTPTAEKRVQKSREVIDSIIKEKTVVYGITTGFGKFARTVIPINKLQELQVNLVRSHSSGVGKPLSPERCRMLLALRINVLAKGYSGISLETLKQVIEMFNASCLPYVPEKGTVGASGDLAPLSHLALGLVGEGKMWSPKSGWADAKYVLEAHGLKPVILKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHALRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIAFVKNIITTELNSATDNPMVFANRGETVSGGNFHGEYPAKALDYLAIGIHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVIEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLEQKVWEVAAPYIEKYRMEHIPESRPLSPTAFSLQFLHKKSTKIPESEDL", "length": 657 }, "evidence": [ { "id": "F1SQR7", "url": "https://omabrowser.org/oma/group/F1SQR7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54JI7-1", "protein_name": "Probable histidine ammonia-lyase", "gene_name": "hal", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSTTDKIVYLNGNTLKIEDLINIGYRGYNVSITQEVEELIQKGRNVIDDILKSEKTVYGINTGFGLFSDVIIPPDQVKMLQVNLIRSHSSGVGTPLTPERTRMLLALRINVLTKGYSGITLETVKRAIKILNGNCLPLVPEKGTVGASGDLAPLSHLALGMMGEGKMYDFGDSGNTFTSNLDVDVLEYRNFKFSPANEILKRQNLTPIELNAKEGLALINGTQLITSLGAEAVYRCKVLAETANIITAMTFEALKGLTAAYHPLIHAARPHSGQGRVAAFLRSVLHSDQYPSEITLANKDTKKVQDSYTLRCVPQVHGIVFDTIDFVQGIINTEMNSATDNPMVFDTDELCGTISGGNFHGEYPAKALDYLTIGIHELSNISERRLERLVNSQLSDGLPSFLVNGGGLNSGFMIAHCTSAALVSENKVLVHPSSADTISTSSAKEDHVSMGGWSARKCLNVVENVENVLAIELLAACQGLDFRRPLKTTEPLEAVYQLVRSKVTFMDKDRFIQPDIEEVYKLIRSGQVLNVVNSILNKK", "length": 539 }, "evidence": [ { "id": "F1SQR7", "url": "https://omabrowser.org/oma/group/F1SQR7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histidine ammonia-lyase activity", "id": "GO:0004397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004397", "evidence": [ { "database": "UniProtKB", "id": "F1SQR7", "url": "https://www.uniprot.org/uniprotkb/F1SQR7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SQR7", "url": "https://www.uniprot.org/uniprotkb/F1SQR7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "L-histidine catabolic process to glutamate and formamide", "id": "GO:0019556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019556", "evidence": [ { "database": "UniProtKB", "id": "F1SQR7", "url": "https://www.uniprot.org/uniprotkb/F1SQR7" } ], "pmid": "" }, { "name": "L-histidine catabolic process to glutamate and formate", "id": "GO:0019557", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019557", "evidence": [ { "database": "UniProtKB", "id": "F1SQR7", "url": "https://www.uniprot.org/uniprotkb/F1SQR7" } ], "pmid": "" }, { "name": "L-histidine metabolic process", "id": "GO:0006547", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006547", "evidence": [ { "database": "UniProtKB", "id": "F1SQR7", "url": "https://www.uniprot.org/uniprotkb/F1SQR7" } ], "pmid": "" }, { "name": "L-histidine catabolic process", "id": "GO:0006548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006548", "evidence": [ { "database": "UniProtKB", "id": "F1SQR7", "url": "https://www.uniprot.org/uniprotkb/F1SQR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 238, "end_pos": 240, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 408, "end_pos": 410, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "21232", "name": "", "equation": "L-histidine = trans-urocanate + NH4(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "21232", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/21232" } ] }, { "id": "R-SSC-70899", "name": "histidine => urocanate + NH4+", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-ALL-30721" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-70899", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70899" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-30721", "participant_name": "UCA [cytosol]", "crossref": [ { "id": "ZINC000034633903", "database": "ZINC", "url": "" }, { "id": "C00785", "database": "COMPOUND", "url": "" }, { "id": "17771", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQR7" }, { "id": "PF12053", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Par3/HAL N-terminal", "eco_id": "ECO_0000259", "start_pos": 13, "end_pos": 80, "start_aa": "Leu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 238, "end_pos": 240 }, { "start_pos": 307, "end_pos": 309 }, { "start_pos": 408, "end_pos": 410 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L660-1", "uniprot_ac": "I3L660", "uniprot_id": "I3L660_PIG", "mass": { "chemical_mass": 24038.0, "monoisotopic_mass": 24038.0 }, "refseq": {}, "gene_names": [ { "name": "PFN2", "type": "recommended", "evidence": [ { "id": "I3L660", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L660" } ] } ], "protein_names": [ { "name": "Profilin", "type": "recommended", "evidence": [ { "id": "I3L660", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L660/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. By binding to PIP2, it inhibits the formation of IP3 and DG.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQU9#function" }, { "database": "UniProtKB", "id": "ARBA00025549", "url": "https://www.uniprot.org/uniprotkb/ARBA00025549#function" }, { "database": "UniProtKB", "id": "I3L660", "url": "https://www.uniprot.org/uniprotkb/I3L660#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L660", "url": "https://www.uniprot.org/uniprotkb/I3L660" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PFN2", "url": "https://www.uniprot.org/uniprotkb/I3L660", "locus": {} } ], "crossref": [ { "id": "I3L660", "url": "https://alphafold.ebi.ac.uk/entry/I3L660", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030260", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030260", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00148", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00148", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR005454", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005454", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036140", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036140", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13936", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13936", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13936:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13936:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00235", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00235", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5663220", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QQU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQU9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQU9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L660", "url": "https://www.uniprot.org/uniprotkb/I3L660", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L660-1", "url": "https://www.uniprot.org/uniprotkb/I3L660-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLPGGLRGRGPGTPPRLGCTDRRGRRPGVPSACPGEAGGGGYTPAGVEVLFLPRPASSSPLEALRFALYVPGWVQGPGPGWGPRVAGPPLSPRTARHPRRGLWEAAAARPPGSSQRLGVGLPVSRPLGLARNPVEIDMIVGKDREGFFTNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRDSGF", "length": 229, "header": "tr|I3L660-1|I3L660_PIG Isoform 1 of Profilin OS=Sus scrofa OX=9823 GN=PFN2 PE=1 SV=4 CANONICAL=I3L660-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQU9-1", "url": "https://www.uniprot.org/uniprotkb/I3L660/entry#A0A5G2QQU9-1", "sequence": { "sequence": "MAGWQSYVDNLMCDGCCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIVGKDREGFFTNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRALVIVMGKEGVHGGTLNKKAYELALYLRRYPNITIWSVSSLFFIGPIFICSLSFYMKLHYCGLGCLVMNFFFICILCHTIV", "length": 189, "header": "tr|A0A5G2QQU9-1|I3L660_PIG Computationally mapped isoform of Profilin OS=Sus scrofa OX=9823 GN=PFN2 PE=1 SV=2 CANONICAL=I3L660-1" }, "locus": { "chromosome": "13", "start_pos": 90183436, "end_pos": 90177825, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079291.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079291.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067114.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067114.2" } ] } }, { "isoform_ac": "I3L660-1", "url": "https://www.uniprot.org/uniprotkb/I3L660/entry#I3L660-1", "sequence": { "sequence": "MRLPGGLRGRGPGTPPRLGCTDRRGRRPGVPSACPGEAGGGGYTPAGVEVLFLPRPASSSPLEALRFALYVPGWVQGPGPGWGPRVAGPPLSPRTARHPRRGLWEAAAARPPGSSQRLGVGLPVSRPLGLARNPVEIDMIVGKDREGFFTNGLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGEPTYNVAVGRAGRVLVFVMGKEGVHGGGLNKKAYSMAKYLRDSGF", "length": 229, "header": "tr|I3L660-1|I3L660_PIG Isoform 1 of Profilin OS=Sus scrofa OX=9823 GN=PFN2 PE=1 SV=4 CANONICAL=I3L660-1" }, "locus": { "chromosome": "13", "start_pos": 90183177, "end_pos": 90179129, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025236.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025236.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019511.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019511.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 44, "start_aa": "Thr", "end_pos": 44, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr44", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQU9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5663220", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5663220", "resource": "Reactome", "description": "RHO GTPases Activate Formins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "I3L660", "url": "https://www.uniprot.org/uniprotkb/I3L660" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "I3L660", "url": "https://www.uniprot.org/uniprotkb/I3L660" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L660", "url": "https://www.uniprot.org/uniprotkb/I3L660" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "actin cytoskeleton organization", "id": "GO:0030036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030036", "evidence": [ { "database": "UniProtKB", "id": "I3L660", "url": "https://www.uniprot.org/uniprotkb/I3L660" } ], "pmid": "" }, { "name": "regulation of actin filament polymerization", "id": "GO:0030833", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030833", "evidence": [ { "database": "UniProtKB", "id": "I3L660", "url": "https://www.uniprot.org/uniprotkb/I3L660" } ], "pmid": "" }, { "name": "positive regulation of actin filament bundle assembly", "id": "GO:0032233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032233", "evidence": [ { "database": "UniProtKB", "id": "I3L660", "url": "https://www.uniprot.org/uniprotkb/I3L660" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L660-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 229, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L660-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L660" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 44 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STG1-1", "uniprot_ac": "F1STG1", "uniprot_id": "F1STG1_PIG", "mass": { "chemical_mass": 44810.0, "monoisotopic_mass": 44810.0 }, "refseq": {}, "gene_names": [ { "name": "RNF149", "type": "recommended", "evidence": [ { "id": "F1STG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ] } ], "protein_names": [ { "name": "Ring finger protein 149", "type": "synonym", "evidence": [ { "id": "F1STG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF149", "url": "https://www.uniprot.org/uniprotkb/F1STG1", "locus": { "chromosome": "3", "start_pos": 53060333, "end_pos": 53032631, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008168", "url": "https://www.ensembl.org/id/ENSSSCG00000008168" } ] } } ], "crossref": [ { "id": "F1STG1", "url": "https://alphafold.ebi.ac.uk/entry/F1STG1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008168", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008168", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02122", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02122", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16804", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16804", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042712", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042712", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46539", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46539", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46539:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46539:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02225", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02225", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QR62", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QR62-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QR62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STG1-1", "url": "https://www.uniprot.org/uniprotkb/F1STG1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWRRRRLQARGALALLALALCSPGARGRALEWFSAVVSTEYVDPQTNRTVRSVSESGRFGDSSPKEGAHGLVGVPRAEDRDPEGCEPYTRFLVPGVQGAAPWVALVARGGCTFKDKVLAAARRNASAVVLYNEEHYGNFTSPMSHAGTGDTVVIMVSYPKGREILELVQKDIPVKMTIGVGTRHVQEFLSGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQSHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGELEDGQEVPGPEPAPGGVLAADLSLSLPDGDRSDNSVSSSTSDIVPQCDGSFKEDNGVTDRAWAGIKGHFILFTLAEFVNVKIMYILLPFRF", "length": 407, "header": "tr|F1STG1-1|F1STG1_PIG Isoform 1 of Ring finger protein 149 OS=Sus scrofa OX=9823 GN=RNF149 PE=4 SV=5 CANONICAL=F1STG1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QR62-1", "url": "https://www.uniprot.org/uniprotkb/F1STG1/entry#A0A5G2QR62-1", "sequence": { "sequence": "MAWRRVQARGALALLALALCSPGARGRALEWFSAVVSTEYVDPQTNRTVRSVSESGRFGDSSPKEGAHGLVGVPRAEDRDPEGCEPYTRFLVPGVQGAAPWVALVARGGCTFKDKVLAAARRNASAVVLYNEEHYGNFTSPMSHAGTGDTVVIMVSYPKGREILELVQKDIPVKMTIGVGTRHVQEFLSGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGELEDGQEVPGPEPAPGGVLAADLSLSLPDGDRSDNSVSSSTSDIVPQCDGSFKEDTGENTALLETGRSEPQHGGPVS", "length": 367, "header": "tr|A0A5G2QR62-1|F1STG1_PIG Computationally mapped isoform of Ring finger protein 149 OS=Sus scrofa OX=9823 GN=RNF149 PE=4 SV=2 CANONICAL=F1STG1-1" }, "locus": { "chromosome": "3", "start_pos": 53059329, "end_pos": 53032773, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090298.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090298.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067407.2", "url": "https://www.ensembl.org/id/ENSSSCP00000067407.2" } ] } }, { "isoform_ac": "A0A5G2QT69-1", "url": "https://www.uniprot.org/uniprotkb/F1STG1/entry#A0A5G2QT69-1", "sequence": { "sequence": "MAWRRRPLALCSPGARGRALEWFSAVVSTEYVDPQTNRTVRSVSESGRFGDSSPKEGAHGLVGVPRAEDRDPEGCEPYTRFLVPGVQGAAPWVALVARGGCTFKDKVLAAARRNASAVVLYNEEHYGNFTSPMSHAGTGDTVVIMVSYPKGREILELVQKDIPVKMTIGVGTRHVQEFLSGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQSHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGELEDGQEVPGPEPAPGGVLAADLSLSLPDGDRSDNSVSSSTSDIVPQCDGSFKEDTGENTALLETGRSEPQHGGPVS", "length": 381, "header": "tr|A0A5G2QT69-1|F1STG1_PIG Computationally mapped isoform of Ring finger protein 149 OS=Sus scrofa OX=9823 GN=RNF149 PE=4 SV=1 CANONICAL=F1STG1-1" }, "locus": { "chromosome": "3", "start_pos": 53059329, "end_pos": 53032773, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068447.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068447.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067341.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067341.1" } ] } }, { "isoform_ac": "F1STG1-1", "url": "https://www.uniprot.org/uniprotkb/F1STG1/entry#F1STG1-1", "sequence": { "sequence": "MAWRRRRLQARGALALLALALCSPGARGRALEWFSAVVSTEYVDPQTNRTVRSVSESGRFGDSSPKEGAHGLVGVPRAEDRDPEGCEPYTRFLVPGVQGAAPWVALVARGGCTFKDKVLAAARRNASAVVLYNEEHYGNFTSPMSHAGTGDTVVIMVSYPKGREILELVQKDIPVKMTIGVGTRHVQEFLSGQSVVFVAIAFITMMIISLAWLIFYYIQRFLYTGSQFGSQSHRKETKKVIGQLPLHTVKHGEKGIDVDAENCAVCIENFKVKDVIRILPCKHIFHRICIDPWLLDHRTCPMCKLDVIKALGYWGELEDGQEVPGPEPAPGGVLAADLSLSLPDGDRSDNSVSSSTSDIVPQCDGSFKEDNGVTDRAWAGIKGHFILFTLAEFVNVKIMYILLPFRF", "length": 407, "header": "tr|F1STG1-1|F1STG1_PIG Isoform 1 of Ring finger protein 149 OS=Sus scrofa OX=9823 GN=RNF149 PE=4 SV=5 CANONICAL=F1STG1-1" }, "locus": { "chromosome": "3", "start_pos": 53059456, "end_pos": 53032773, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008945.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008945.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008719.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008719.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ], "pmid": "" }, { "name": "late endosome", "id": "GO:0005770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005770", "evidence": [ { "database": "UniProtKB", "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "F1STG1", "url": "https://www.uniprot.org/uniprotkb/F1STG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" }, { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STG1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 407, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STG1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STG1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG1" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 263, "end_pos": 304, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 }, { "start_pos": 139, "end_pos": 141 }, { "start_pos": 48, "end_pos": 50 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV40-1", "uniprot_ac": "F1SV40", "uniprot_id": "F1SV40_PIG", "mass": { "chemical_mass": 58892.0, "monoisotopic_mass": 58892.0 }, "refseq": { "ac": "XP_003127843", "name": "splicing factor 3A subunit 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127843" }, "gene_names": [ { "name": "SF3A3", "type": "recommended", "evidence": [ { "id": "F1SV40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ] }, { "name": "SF3A3", "type": "synonym", "evidence": [ { "id": "XP_003127843", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127843" } ] } ], "protein_names": [ { "name": "Splicing factor 3a subunit 3", "type": "synonym", "evidence": [ { "id": "F1SV40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV40/entry#names_and_taxonomy" } ] }, { "name": "splicing factor 3A subunit 3", "type": "synonym", "evidence": [ { "id": "XP_003127843", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127843" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SF3A3", "url": "https://www.uniprot.org/uniprotkb/F1SV40", "locus": { "chromosome": "6", "start_pos": 93951601, "end_pos": 93976329, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003643", "url": "https://www.ensembl.org/id/ENSSSCG00000003643" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003643", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003643", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512288", "url": "https://www.ncbi.nlm.nih.gov/gene/100512288", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021966", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021966", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031774", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031774", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512288", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512288", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GPKAFQK", "url": "https://omabrowser.org/oma/group/GPKAFQK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV40", "url": "https://www.orthodb.org/?gene=F1SV40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12786", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12786", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12786:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12786:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11931", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11931", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12108", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12108", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13297", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13297", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16837", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16837", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127843", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127843", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QSK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QSK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV40-1", "url": "https://www.uniprot.org/uniprotkb/F1SV40-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQNEFEKKWENGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL", "length": 501, "header": "tr|F1SV40-1|F1SV40_PIG Isoform 1 of Splicing factor 3a subunit 3 OS=Sus scrofa OX=9823 GN=SF3A3 PE=1 SV=1 CANONICAL=F1SV40-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QSK9-1", "url": "https://www.uniprot.org/uniprotkb/F1SV40/entry#A0A5G2QSK9-1", "sequence": { "sequence": "METILEQQRRYHEEKERLMDVMAKEMLTKKLLHSDGFVFAFQRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQNEFEKKWENGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL", "length": 495, "header": "tr|A0A5G2QSK9-1|F1SV40_PIG Computationally mapped isoform of Splicing factor 3a subunit 3 OS=Sus scrofa OX=9823 GN=SF3A3 PE=1 SV=1 CANONICAL=F1SV40-1" }, "locus": { "chromosome": "6", "start_pos": 93976158, "end_pos": 93951834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068686.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068686.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067812.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067812.1" } ] } }, { "isoform_ac": "F1SV40-1", "url": "https://www.uniprot.org/uniprotkb/F1SV40/entry#F1SV40-1", "sequence": { "sequence": "METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQNEFEKKWENGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL", "length": 501, "header": "tr|F1SV40-1|F1SV40_PIG Isoform 1 of Splicing factor 3a subunit 3 OS=Sus scrofa OX=9823 GN=SF3A3 PE=1 SV=1 CANONICAL=F1SV40-1" }, "locus": { "chromosome": "6", "start_pos": 93976158, "end_pos": 93951834, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004039.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004039.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003948.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003948.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QSK9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QSK9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512288", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512288", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HE04-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "Sf3a3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL", "length": 501 }, "evidence": [ { "id": "F1SV40", "url": "https://omabrowser.org/oma/group/F1SV40/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O46106-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "noi", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METLLEQQRRLHEERERLVKLMVDEHATKKPGEKERIHSEHRLKYLMELHHNSTSQLRDLYEDKDNERKAEIAALSGPNEFNEFYARLKQIKQFYKSHPAEVSVPLSVEFDEMIRVYNNPDDMSALVEFTDEEGGGRYLDLNECYELYLNLRSVEKLDYITYLMSFDHVFDIPRERKNREYRIYIETLNDYLHHFILRIQPLLDLEGELLKVELDFQRQWLMGTFPGFSIKETESALANTGAHLDLSAFSSWEELASLGLDRLKSALVALGLKCGGTLEERAQRLFSTKGKSTLDPALMAKKPSAKTASAQSREHERHKEIAQLEALLYKYADLLSEQRAATKENVQRKQARTGGERDDSDVEASESDNEDDPDADDVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAITLWEKLKSQKQSERWVADQEEEFEDSLGNVVNRKTFEDLKRQGLL", "length": 503 }, "evidence": [ { "id": "F1SV40", "url": "https://omabrowser.org/oma/group/F1SV40/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "P19736-1", "protein_name": "Pre-mRNA-splicing factor PRP9", "gene_name": "PRP9", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MNLLETRRSLLEEMEIIENAIAERIQRNPELYYHYIQESSKVFPDTKLPRSSLIAENKIYKFKKVKRKRKQIILQQHEINIFLRDYQEKQQTFNKINRPEETQEDDKDLPNFERKLQQLEKELKNEDENFELDINSKKDKYALFSSSSDPSRRTNILSDRARDLDLNEIFTRDEQYGEYMELEQFHSLWLNVIKRGDCSLLQFLDILELFLDDEKYLLTPPMDRKNDRYMAFLLKLSKYVETFFFKSYALLDAAAVENLIKSDFEHSYCRGSLRSEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQEEHLSGKSFDMPLGPDGLPMPYWLYKLHGLDREYRCEICSNKVYNGRRTFERHFNEERHIYHLRCLGIEPSSVFKGITKIKEAQELWKNMQGQSQLTSIAAVPPKPNPSQLKVPTELELEEEDEEGNVMSKKVYDELKKQGLV", "length": 530 }, "evidence": [ { "id": "F1SV40", "url": "https://omabrowser.org/oma/group/F1SV40/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q12874-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "SF3A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQAEFEKKWENGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL", "length": 501 }, "evidence": [ { "id": "F1SV40", "url": "https://omabrowser.org/oma/group/F1SV40/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D554-1", "protein_name": "Splicing factor 3A subunit 3", "gene_name": "Sf3a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METILEQQRRYHEEKERLMDVMAKEMLTKKSTLRDQINSDHRTRAMQDRYMEVSGNLRDLYDDKDGLRKEELNAISGPNEFAEFYNRLKQIKEFHRKHPNEICVPMSVEFEELLKARENPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFDIPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQTDFEKKWDNGTFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTKRDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQRKQARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL", "length": 501 }, "evidence": [ { "id": "F1SV40", "url": "https://omabrowser.org/oma/group/F1SV40/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FG01-1", "protein_name": "Splicing factor SF3a60 homolog", "gene_name": "ATO", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSTLLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVETYEDKDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYEARLKEEPIIAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVFSQPEKIPRKLKLSRQYMKYMEALLEYLVYFFQRTEPLQDLDRILSKVCSDFEEQYADGIVEGLDNELIPSQHTVIDLDYYSTVEELVDVGPEKLKEALGALGLKVGGTPQQRAERLFLTKHTPLEKLDKKHFARPPHNGKQNGDAKSTHESENAKEIALTEAKVKKLCNLLDETIERTKQNIVKKQSLTYEEMEGEREGEEANTELESDDEDGLIYNPLKLPIGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKRIQERQGVNKWRPELEEEYEDREGNIYNKKTYSDLQRQGLI", "length": 504 }, "evidence": [ { "id": "F1SV40", "url": "https://omabrowser.org/oma/group/F1SV40/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "pmid": "" }, { "name": "U2 snRNP", "id": "GO:0005686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005686", "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "pmid": "" }, { "name": "U2-type precatalytic spliceosome", "id": "GO:0071005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071005", "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "pmid": "" }, { "name": "U2-type prespliceosome assembly", "id": "GO:1903241", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903241", "evidence": [ { "database": "UniProtKB", "id": "F1SV40", "url": "https://www.uniprot.org/uniprotkb/F1SV40" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 223, "end_pos": 225, "annotation": "n_glycosylation_sequon" }, { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV40", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV40" }, { "id": "PS50171", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50171" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Matrin-type", "eco_id": "ECO_0000259", "start_pos": 406, "end_pos": 437, "start_aa": "Tyr", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 223, "end_pos": 225 }, { "start_pos": 413, "end_pos": 415 }, { "start_pos": 448, "end_pos": 450 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5I4-1", "uniprot_ac": "I3L5I4", "uniprot_id": "I3L5I4_PIG", "mass": { "chemical_mass": 225487.0, "monoisotopic_mass": 225487.0 }, "refseq": { "ac": "XP_020951796", "name": "structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951796" }, "gene_names": [ { "name": "SMCHD1", "type": "recommended", "evidence": [ { "id": "I3L5I4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ] }, { "name": "SMCHD1", "type": "synonym", "evidence": [ { "id": "XP_020951796", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951796" } ] } ], "protein_names": [ { "name": "Structural maintenance of chromosomes flexible hinge domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "I3L5I4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5I4/entry#names_and_taxonomy" } ] }, { "name": "structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951796", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951796" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SMCHD1", "url": "https://www.uniprot.org/uniprotkb/I3L5I4", "locus": { "chromosome": "6", "start_pos": 103808066, "end_pos": 103965335, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029030", "url": "https://www.ensembl.org/id/ENSSSCG00000029030" } ] } } ], "crossref": [ { "id": "ENSSSCG00000029030", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029030", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16937", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16937", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627122", "url": "https://www.ncbi.nlm.nih.gov/gene/100627122", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010935", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010935", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036890", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036890", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058612", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058612", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058613", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058613", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058616", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058616", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100627122", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627122", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PIECFNR", "url": "https://omabrowser.org/oma/group/PIECFNR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L5I4", "url": "https://www.orthodb.org/?gene=I3L5I4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22640", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22640", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22640:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22640:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06470", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06470", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13589", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13589", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22899", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22899", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26194", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26194", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26195", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26195", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26196", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26196", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26197", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26197", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26198", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26198", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26199", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26199", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020951796", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951796", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QTG1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QTG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QTG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1S8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1S8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1S8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1S8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R453", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R453", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R453-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R453-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5I4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPR6", "url": "https://www.uniprot.org/uniprotkb/I3LPR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPR6-1", "url": "https://www.uniprot.org/uniprotkb/I3LPR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPX9", "url": "https://www.uniprot.org/uniprotkb/I3LPX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPX9-1", "url": "https://www.uniprot.org/uniprotkb/I3LPX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAGGGGPSVGTGEGGGGDSYRTVYLFDRREKESELGERALQVGELSDYSAFRASVCQTLAISPEEKFVITTTSRKEITCDNFDETVKDGVTLYVLQTVNQLLLTATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNAGVRRIQIKLLFDETQGKPAVAVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELLLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDERFLHQLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKRSSKEVGPFNNIDIEISMFEKGKTPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDKETYPDDPCFPSKLKDEDDDDDCFILDKAARGKRPIFECFWNGRLIPYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIEWDGKVFKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIHKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNIPVEFQDEFGHTSQLSADIQPVFEASGLSLHYEEITKGPNCVIQGVTAKGPVNSCQGKNFNLKVTLPGLKEDTQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESENITAQPKLIVHCKFLGAPNLPIYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREIHITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLIKANNLKLTPSNQQHKTDERGRANLGVFSVYAPRGEHTMQVKATFNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLAGSIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDNDKEDCCFYFRDKAIPSKVGTYCIQFFFMMDKANILNSEQIIVDVLPNQPMKLVPEIQPATPAVSNVRSIASRTLVKDLYLHITDDYNNHTGIDLVGTVMVTIKGSNEEDDTPLFNGKVRTLEFPFVKGSAEITNLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQQQMAALTKEKDQLSKSIIMYRSMFDTRNQLLDEIKCQVERAKLKEAQLRNELKTHNIDIPTTQQMPHIEALLKSKIAEQEELKKKPRRSCTLPNYTKGNGDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPIGDPVFARDLLTFPDSVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLILGEQIDLLQQYRTAVCRLGTVNKELKGELEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPVPPKRMRRETTRQNRIITKTDV", "length": 1997, "header": "tr|I3L5I4-1|I3L5I4_PIG Isoform 1 of Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SMCHD1 PE=1 SV=2 CANONICAL=I3L5I4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QTG1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I4/entry#A0A5G2QTG1-1", "sequence": { "sequence": "SFMIYFYLSSVLIISCISISLSVVLVYFRHIYHYYIHGPKGNEKRSSKEVGPFNNIDIEISMFEKGKTPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDKETYPDDPCFPSKLKDEDDDDDCFILDKAARGKRPIFECFWNGRLIPYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIEWDGKVFKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMVRSQVTKKIFFLLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIHKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNIPVEFQDEFGHTSQLSADIQPVFEASGLSLHYEEITKGPNCVIQGVTAKGPVNSCQGKNFNLKVTLPGLKEDTQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESENITAQPKLIVHCKFLGAPNLPIYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREIHITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRFVDKLYLKFSHLSQVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLIKANNLKLTPSNQQHKTDERGRANLGVFSVYAPRGEHTMQVKATFNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLAGSIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDNDKEDCCFYFRDKAIPSKVGTYCIQFFFMMDKANILNSEQIIVDVLPNQPMKLVPEIQPATPAVSNVRSIASRTLVKDLYLHITDDYNNHTGIDLVGTVMVTIKGSNEEDDTPLFNGKVRTLEFPFVKGSAEITNLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQQQMAALTKEKDQLSKSIIMYRSMFDTRNQLLDEIKCQVERAKLKEAQLRNELKTHNIDIPTTQQMPHIEALLKSKIAEQEELKKKPRRSCTLPNYTKGNGDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPIGDPVFARDLLTFPDSVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLILGEQIDLLQQYRTAVCRLGTVNKELKGELEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPVPPKRMRRETTRQNR", "length": 1636, "header": "tr|A0A5G2QTG1-1|I3L5I4_PIG Computationally mapped isoform of Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SMCHD1 PE=1 SV=1 CANONICAL=I3L5I4-1" }, "locus": { "chromosome": "6", "start_pos": 103923100, "end_pos": 103820793, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077514.1", "url": "https://www.ensembl.org/id/ENSSSCT00000077514.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068118.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068118.1" } ] } }, { "isoform_ac": "A0A5G2R1S8-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I4/entry#A0A5G2R1S8-1", "sequence": { "sequence": "MAAAGGGGPSVGTGEGGGGDSYRTVYLFDRREKESELGERALQVGELSDYSAFRASVCQTLAISPEEKFVITTTSRKEITCDNFDETVKDGVTLYVLQTVNQLLLTATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNAGVRRIQIKLLFDETQGKPAVAVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELLLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDERFLHQLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKRSSKEVGPFNNIDIEISMFEKGKTPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDKETYPDDPCFPSKLKDEDDDDDCFILDKAARGKRPIFECFWNGRLIPYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIEWDGKVFKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIHKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNIPVEFQDEFGHTSQLSADIQPVFEASGLSLHYEEITKGPNCVIQGVTAKGPVNSCQGKNFNLKVTLPGLKEDTQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESENITAQPKLIVHCKFLGAPNLPIYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREIHITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLIKANNLKLTPSNQQHKTDERGRANLGVFSVYAPRGEHTMQVKATFNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLAGSIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDNDKEDCCFYFRDKAIPSKVGTYCIQFFFMMDKANILNSEQIIVDVLPNQPMKLVPEIQPATPAVSNVRSIASRTLVKDLYLHITDDYNNHTGIDLVGTVMVTIKGSNEEDDTPLFNGKVRTLEFPFVKGSAEITNLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQQQMAALTKEKDQLSKSIIMYRSMFDTRNQLLDEIKCQVERAKLKEAQLRNELKTHNIDIPTTQQMPHIEALLKSKIAEQEELKKKPRRSCTLPNYTKGNGDVLGKFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLILGEQIDLLQQYRTAVCRLGTVNKELKGELEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPVPPKRMRRETTRQNRIITKTDV", "length": 1896, "header": "tr|A0A5G2R1S8-1|I3L5I4_PIG Computationally mapped isoform of Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SMCHD1 PE=1 SV=2 CANONICAL=I3L5I4-1" }, "locus": { "chromosome": "6", "start_pos": 103964992, "end_pos": 103810779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085987.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085987.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071136.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071136.2" } ] } }, { "isoform_ac": "A0A5G2R453-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I4/entry#A0A5G2R453-1", "sequence": { "sequence": "MAAAGGGGPSVGTGEGGGGDSYRTVYLFDRREKESELGERALQVGELSDYSAFRASVCQTLAISPEEKFVITTTSRKEITCDNFDETVKDGVTLYVLQTVNQLLLTATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNAGVRRIQIKLLFDETQGKPAVAVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELLLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDERFLHQLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKRSSKEVGPFNNIDIEISMFEKGKTPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDKETYPDDPCFPSKLKDEDDDDDCFILDKAARGKRPIFECFWNGRLIPYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIEWDGKVFKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMVRSQVTKKIFFLLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIHKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNIPVEFQDEFGHTSQLSADIQPVFEASGLSLHYEEITKGPNCVIQGVTAKGPVNSCQGKNFNLKVTLPGLKEDTQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESENITAQPKLIVHCKFLGAPNLPIYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREIHITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRFVDKLYLKFSHLSQVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLIKANNLKLTPSNQQHKTDERGRANLGVFSVYAPRGEHTMQVKATFNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLAGSIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDNDKEDCCFYFRDKAIPSKVGTYCIQFFFMMDKANILNSEQIIVDVLPNQPMKLVPEIQPATPAVSNVRSIASRTLVKDLYLHITDDYNNHTGIDLVGTVMVTIKGSNEEDDTPLFNGKVRTLEFPFVKGSAEITNLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQQQMAALTKEKDQLSKSIIMYRSMFDTRNQLLDEIKCQVERAKLKEAQLRNELKTHNIDIPTTQQMPHIEALLKSKIAEQEELKKKPRRSCTLPNYTKGNGDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPIGDPVFARDLLTFPDSVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLILGEQIDLLQQYRTAVCRLGTVNKELKGELEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPVPPKRMRRETTRQNR", "length": 1951, "header": "tr|A0A5G2R453-1|I3L5I4_PIG Computationally mapped isoform of Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SMCHD1 PE=1 SV=1 CANONICAL=I3L5I4-1" }, "locus": { "chromosome": "6", "start_pos": 103964992, "end_pos": 103820793, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074450.1", "url": "https://www.ensembl.org/id/ENSSSCT00000074450.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068969.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068969.1" } ] } }, { "isoform_ac": "I3L5I4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I4/entry#I3L5I4-1", "sequence": { "sequence": "MAAAGGGGPSVGTGEGGGGDSYRTVYLFDRREKESELGERALQVGELSDYSAFRASVCQTLAISPEEKFVITTTSRKEITCDNFDETVKDGVTLYVLQTVNQLLLTATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNAGVRRIQIKLLFDETQGKPAVAVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELLLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDERFLHQLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKRSSKEVGPFNNIDIEISMFEKGKTPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDKETYPDDPCFPSKLKDEDDDDDCFILDKAARGKRPIFECFWNGRLIPYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIEWDGKVFKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIHKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNIPVEFQDEFGHTSQLSADIQPVFEASGLSLHYEEITKGPNCVIQGVTAKGPVNSCQGKNFNLKVTLPGLKEDTQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESENITAQPKLIVHCKFLGAPNLPIYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREIHITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLIKANNLKLTPSNQQHKTDERGRANLGVFSVYAPRGEHTMQVKATFNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLAGSIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDNDKEDCCFYFRDKAIPSKVGTYCIQFFFMMDKANILNSEQIIVDVLPNQPMKLVPEIQPATPAVSNVRSIASRTLVKDLYLHITDDYNNHTGIDLVGTVMVTIKGSNEEDDTPLFNGKVRTLEFPFVKGSAEITNLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQQQMAALTKEKDQLSKSIIMYRSMFDTRNQLLDEIKCQVERAKLKEAQLRNELKTHNIDIPTTQQMPHIEALLKSKIAEQEELKKKPRRSCTLPNYTKGNGDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPIGDPVFARDLLTFPDSVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLILGEQIDLLQQYRTAVCRLGTVNKELKGELEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPVPPKRMRRETTRQNRIITKTDV", "length": 1997, "header": "tr|I3L5I4-1|I3L5I4_PIG Isoform 1 of Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SMCHD1 PE=1 SV=2 CANONICAL=I3L5I4-1" }, "locus": { "chromosome": "6", "start_pos": 103964992, "end_pos": 103810779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025549.3", "url": "https://www.ensembl.org/id/ENSSSCT00000025549.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019283.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019283.2" } ] } }, { "isoform_ac": "I3LPR6-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I4/entry#I3LPR6-1", "sequence": { "sequence": "MFMNFYFLKKILRRRRKIKRQYIVDILETERHIYHYYIHGPKGNEKRSSKEVGPFNNIDIEISMFEKGKTPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDKETYPDDPCFPSKLKDEDDDDDCFILDKAARGKRPIFECFWNGRLIPYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIEWDGKVFKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIHKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNIPVEFQDEFGHTSQLSADIQPVFEASGLSLHYEEITKGPNCVIQGVTAKGPVNSCQGKNFNLKVTLPGLKEDTQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESENITAQPKLIVHCKFLGAPNLPIYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREIHITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLIKANNLKLTPSNQQHKTDERGRANLGVFSVYAPRGEHTMQVKATFNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLAGSIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDNDKEDCCFYFRDKAIPSKVGTYCIQFFFMMDKANILNSEQIIVDVLPNQPMKLVPEIQPATPAVSNVRSIASRTLVKDLYLHITDDYNNHTGIDLVGTVMVTIKGSNEEDDTPLFNGKVRTLEFPFVKGSAEITNLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQQQMAALTKEKDQLSKSIIMYRSMFDTRNQLLDEIKCQVERAKLKEAQLRNELKTHNIDIPTTQQMPHIEALLKSKIAEQEELKKKPRRSCTLPNYTKGNGDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPIGDPVFARDLLTFPDSVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPIPKQCLILGEQIDLLQQYRTAVCRLGTVNKELKGELEYLHTPDMKKKKQELDEQEKNLKLIEQKLGMTPTRKCNDSLRHPMTDCPVPPKRMRRETTRQNRIITKTDV", "length": 1684, "header": "tr|I3LPR6-1|I3L5I4_PIG Computationally mapped isoform of Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SMCHD1 PE=1 SV=2 CANONICAL=I3L5I4-1" }, "locus": { "chromosome": "6", "start_pos": 103928779, "end_pos": 103810779, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029309.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029309.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026093.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026093.2" } ] } }, { "isoform_ac": "I3LPX9-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I4/entry#I3LPX9-1", "sequence": { "sequence": "MAAAGGGGPSVGTGEGGGGDSYRTVYLFDRREKESELGERALQVGELSDYSAFRASVCQTLAISPEEKFVITTTSRKEITCDNFDETVKDGVTLYVLQTVNQLLLTATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNAGVRRIQIKLLFDETQGKPAVAVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELLLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDERFLHQLISEEKEKDSFTAVVITGVQPEHIQYLKNYFLLWTRQLAHIYHYYIHGPKGNEKRSSKEVGPFNNIDIEISMFEKGKTPKIVNLREIEDDMQTLYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDKETYPDDPCFPSKLKDEDDDDDCFILDKAARGKRPIFECFWNGRLIPYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIEWDGKVFKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEVRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIHKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDPPFRVGVPFNIPVEFQDEFGHTSQLSADIQPVFEASGLSLHYEEITKGPNCVIQGVTAKGPVNSCQGKNFNLKVTLPGLKEDTQILKIRLLPGPPRRLKVKPDSEILVIENGTAFPFQVEVLDESENITAQPKLIVHCKFLGAPNLPIYVVDCSSSGTSILSGPAIQVQNIKKDQTLKAKIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREIHITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCELKGGKTVQMGQELQGEIVIIVTDQYGNQIQAFSPSSLSALGIAGIGLDSSHLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLIKANNLKLTPSNQQHKTDERGRANLGVFSVYAPRGEHTMQVKATFNKNTIEGPIIKLMILPDPEKPIRLNVKYDKDASFLAGSIFTDFMITVISEDDSIIKNINPARISMKMWKLSNSGNRPPANAETFSCNKIKDNDKEDCCFYFRDKAIPSKVGTYCIQFFFMMDKANILNSEQIIVDVLPNQPMKLVPEIQPATPAVSNVRSIASRTLVKDLYLHITDDYNNHTGIDLVGTVMVTIKGSNEEDDTPLFNGKVRTLEFPFVKGSAEITNLVLAENSPGRDSTEYFIVFEPRLPALSRTLESYILPFMFYNDVKKQQQMAALTKEKDQLSKSIIMYRSMFDTRNQLLDEIKCQVERAKLKEAQLRNELKTHNIDIPTTQQMPHIEALLKSKIAEQEELKKKPRRSCTLPNYTKGNGDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRPLPHYRNGKLYFKPIGDPVFARDLLTFPDSVEHCETVFGMLLGDTIILDNLDAANHYRKEIFSSSIALPCAGWAL", "length": 1860, "header": "tr|I3LPX9-1|I3L5I4_PIG Computationally mapped isoform of Structural maintenance of chromosomes flexible hinge domain-containing protein 1 OS=Sus scrofa OX=9823 GN=SMCHD1 PE=1 SV=2 CANONICAL=I3L5I4-1" }, "locus": { "chromosome": "6", "start_pos": 103964992, "end_pos": 103821306, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024634.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024634.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026156.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026156.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1S8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1S8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100627122", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100627122", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GAU4-1", "protein_name": "Structural maintenance of chromosomes flexible hinge domain-containing protein 1", "gene_name": "Smchd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAEGAKDPGGLSKGSGRDGDIDGCRTVYLFDRRGKDSELGDRALQVPERAGYAEFRASVCQVRSGALKGCSRGGEGRWPEAWVGHRHKLVRWPGFCGLGLCRVPTLRLIPGMSRPAWLWPRRMGSRPSVGLCWFSVGLCWSSVRDLETIGISSEEKFVITTTSRKEITCDNFDDTVKDGVTLYLLQSVDQSLLTATKERIDFVPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNVGVRRIQIKLLFDETQGKPAVAVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPIDSKDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPADSVHITNDDERFLHNLIVEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLTHIYHYYIHGPKGNEISTAKDVGPFNNIDIEISLFEKGKTPKIVNLREIQDDMQTLYINTASDSFEFKAHVEGDGVVEGVIRYHPFLYDRETYPDDPCFPSKLRDEDDDDDCFIPEKAARGKRPIFECFWNGRLIPYTSVEDFDWCAPPKKRGLAPIECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKHDKQIKFTLFKGIITRPDLPSKKQGPWATFSAIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLHGDHDGEVYATGGEVQIAMEPQALYDEIKTVPIAKLDRTVAEKTIRKYVEDEMARLPDRLSVTWPEGDELVPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKMENIQKLGNYTLKLQVVLNESNADTYAGRSLPSKAIKFSVKEGKPEKFSFGLLDSPFRVGVPFNIPLEFQDEFGHTTQLLSDIQPVLEASGLSLHYEEITKGPNCVIQGVIAKGPVNSCQGKNFNLKVILPGLKEDSQILKIRLLPGPPHRLKVKPDSEILVIENGTAFPFQVEVVDESDNITAQPKLIVHCKFLGAPNLPVYTVDCSSSGTSILTGSPIQVQNIKKDQTLTARIEIPSCKDVSPVEKTIKLLPSSHVACLQIFSVEGQKAIQIKHQDEVNWIAGDVMRNLIFQMYDEGEREINITPSLAEKIKVNWTPEVNKEHLVQGLLPDVQVPTSVKDVRYCQVSFQDDHVSLESAFTVRPLPDDPKHLKCVLKGGKTVQMGQELQGEIVVIIVDQYGNQISAFSSDSLSTLSISGDGLDSKNLKTTLETSTQSISVQGIRFTPGPPGPKDLCFTWREFSDFIRVHLISGPPTKLLLIDWPELKESIPVINGRQLQNPLIVQLCDQWDNPALVPNVKICLIKASSLKLVPSNQQHKTDDKGRANLGMFTVFAPRGEHTVQVKGVYNKSTIEGPTIKLMILPDPEKPIRLNVKYDKDASFIAGDIFTDFMVSVISEGGSVIKNINPTRISMKMWKLSSGMSRPPANAEIFSCNKIKDNDKEDGCFYFREKTIPCKVGAYCIQFDFMIDKTNMLSSEQVIVDVLPNQPMKLVPDTQPATPAVSNVRSIASRTLVKDLRLSITDNYGNHTGMDLVGTVVATIKGFNEEDTDTPLFIGKVRTLEFPFVNGSAEITTLVLAENSPGRDSTEYFIIFEPRLSTLSSTLESYSLPFMFYNDVKKQQQMAALTKEKDELSKSITMYRSLFDANKQLLDEMKCQAEEAKFKETQLRNELKAHNIDIPATQQIPHIEALLEKKIAEQNELKKRPRRLCTLPNYTKRSGDILGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARCIYDETQGRQQVLPLDSIYRKTLPDWKRPLPHFRNGKLHFKPFGDPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCVDLGKQIDLIQQYRNALCKLNSVRADLDHQLQYLHTPDMKRKKQELDEQEKSLKRIEQKLGMTPMRRCSDSLCLSPKIEVTECPIPTKRMRRESIRQNRRPKGDVPN", "length": 2092 }, "evidence": [ { "id": "I3L5I4", "url": "https://omabrowser.org/oma/group/I3L5I4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0X257-1", "protein_name": "Structural maintenance of chromosomes flexible hinge domain-containing protein 1", "gene_name": "SMCHD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAAGGSRGARKSMQLSPRGGGDRTVFLFDRRREQADPDEKVLSYGKNSYRGFRSAVCQAFGISPDENFVITTTNRKEITEDNFKELVQDGVTLYLLQSVDQTLLSATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATARNTSIRSIQIKLLFDDSNGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYCGFIRNRKPSDSTHITNDDERFLHNLILEERDKESFTAVIITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEANAVTKSVSPFNNIDIEISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKALVDGDGIVEGIIRYHPFLYDKETFPDDPSFPSRLNDDDDDDDCLMIEKGARGKRPIFECFWNGRLIPYTSVEDFDWCAPPKKRGLAPVECYNRISGTLFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWAIYSAIEWDGKTFKTGQLVKTIKTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYAEMKTVPISKLDRTVSDKAVKKYIEDEMARLPDKLSVTWPEGDELLPNETRLAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPAGNKEIISHISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNESNADTYAGRPLPSKTFKFTIVEGKAEKFSVGLLELPFRVGVPFNIPLELQDEFGHATRLTNDIKPILEASGLTLQYEELTAGANCIIKGVTAKGCVNSCQGKNFNLKVTLPGLKEDTKILKIRLQPGPPHRLKVKPDSEILKIENGTAFPFQVEVLDESGNVTVQPKLIVHCKFSGASNLPVYSVDCSNAGTNILTGPVIHVQNIKKDQMLKARIEIPSCKDVPPVEKMIKLLPSSHVARLQILSMNGQKAIQIKHQDEINWVAGDIMHNLIFQMYDEGEREIHITPTVAEKIKVNWTPRINREQLMQGLLPDVKVPTSVKDVRYCLISYLDDHVSLESAFTIRPLPDEPKHIKCKLEGSNTLQLGEDLQGEIDVMITDQYGNQVQTVTSACIGYLGVAGPGLDKSNLQITWQESTFTMRVKGIRFKPCALGSKELCFAWREFSDFIRVNLTAGSPAKLQIMDWPELEKPVVVINGRELLKPLVVQLCDQWGNPSPEPNVKISLMKSSNLKIVPSNHQHKTDDNGRANLGVISIHAPRGEHTLQLRASYNKIALECPIITLNVLPDPDKPVRLNVKYDKNAAFPAGGTFPDFMVSVLSEDDNIIKNINPARISMKMWKGQGSGNRIPTDVTAFSCSKVKDDKEDGFFYFRDKVIPERVGAYSIQFTFAMDKTNMLISEQIVVEVVPNDPVRLLPDSLPATPTVSNVRTITSRTLVKDLCLHIMDEYNNHTGADLVGRIIAKIKSPNEDDTEIPQFQGKISTIEFPFDRGSAEINLVLAENSPGRDSTEYILVFEPDLPALKKPLEPYRLSFMFYNDFKKQQQMATLTRERDKLSQSIGVYRNWFDTTNQLVNEMRCQVKEAETRETHLKNELRKHQIELPETNILQYVDSLIKQKMLDRDGVMKQPRRTCTLPNYPKGNQDVLGKIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKICFRPVGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKLYSAFTGQIDLLQQYRAAVVKLDDVNKDLDLHLRSLNTPEILQKKQELAEQERSLKLIEHKLGMTPSDKVSESLLQPAILDMPDTPIPPKRMRKETVKKLYSSEEWVASAAKKQLLQQQPLQIPPSELNGTARKRKA", "length": 2031 }, "evidence": [ { "id": "I3L5I4", "url": "https://omabrowser.org/oma/group/I3L5I4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A6NHR9-1", "protein_name": "Structural maintenance of chromosomes flexible hinge domain-containing protein 1", "gene_name": "SMCHD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAADGGGPGGASVGTEEDGGGVGHRTVYLFDRREKESELGDRPLQVGERSDYAGFRACVCQTLGISPEEKFVITTTSRKEITCDNFDETVKDGVTLYLLQSVNQLLLTATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNIGVRRIQIKLLFDETQGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDERFLHHLIIEEKEKDSFTAVVITGVQPEHIQYLKNYFHLWTRQLAHIYHYYIHGPKGNEIRTSKEVEPFNNIDIEISMFEKGKVPKIVNLREIQDDMQTLYVNTAADSFEFKAHVEGDGVVEGIIRYHPFLYDRETYPDDPCFPSKLKDEDDEDDCFILEKAARGKRPIFECFWNGRLIPYTSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGVITRPDLPSKKQGPWATYAAIEWDGKIYKAGQLVKTIKTLPLFYGSIVRFFLYGDHDGEVYATGGEVQIAMEPQALYDEVRTVPIAKLDRTVAEKAVKKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSSSGNKEIISHISQHGGKWPYWFKKMENIQKLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDLPFRVGVPFNIPLEFQDEFGHTSQLVTDIQPVLEASGLSLHYEEITKGPNCVIRGVTAKGPVNSCQGKNYNLKVTLPGLKEDSQILKIRLLPGHPRRLKVKPDSEILVIENGTAFPFQVEVLDESDNITAQPKLIVHCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKARIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYDEGEREINITSALAEKIKVNWTPEINKEHLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSLESAFTVRPLPDEPKHLKCEMKGGKTVQMGQELQGEVVIIITDQYGNQIQAFSPSSLSSLSIAGVGLDSSNLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLISGPPAKLLLIDWPELKESIPVINGRDLQNPIIVQLCDQWDNPAPVQHVKISLTKASNLKLMPSNQQHKTDEKGRANLGVFSVFAPRGEHTLQVKAIYNKSIIEGPIIKLMILPDPEKPVRLNVKYDKDASFLAGGLFTDFMISVISEDDSIIKNINPARISMKMWKLSTSGNRPPANAETFSCNKIKDNDKEDGCFYFRDKVIPNKVGTYCIQFGFMMDKTNILNSEQVIVEVLPNQPVKLVPKIKPPTPAVSNVRSVASRTLVRDLHLSITDDYDNHTGIDLVGTIIATIKGSNEEDTDTPLFIGKVRTLEFPFVNGSAEIMSLVLAESSPGRDSTEYFIVFEPRLPLLSRTLEPYILPFMFYNDVKKQQQMAALTKEKDQLSQSIVMYKSLFEASQQLLNEMKCQVEEARLKEAQLRNELKIHNIDIPTTQQVPHIEALLKRKLSEQEELKKKPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARRIYDETQGRQQVLPLDSIYKKTLPDWKRSLPHFRNGKLYFKPIGDPVFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLILGEQIDLLQQYRSAVCKLDSVNKDLNSQLEYLRTPDMRKKKQELDEHEKNLKLIEEKLGMTPIRKCNDSLRHSPKVETTDCPVPPKRMRREATRQNRIITKTDV", "length": 2005 }, "evidence": [ { "id": "I3L5I4", "url": "https://omabrowser.org/oma/group/I3L5I4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P5D8-1", "protein_name": "Structural maintenance of chromosomes flexible hinge domain-containing protein 1", "gene_name": "Smchd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAEGASDPAGLSEGSGRDGAVDGCRTVYLFDRRGKDSELGDRALQVSEHADYAGFRASVCQTIGISSEEKFVITTTSRKEITCNNFDHTVKDGVTLYLLQSVDQSLLTATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNNGVRRIQIKLLFDETQGKPAVAVVDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPIDSKDVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPADSAHITNDDERFLHNLIEEEKEKDSFTAVVITGVQPEHIQYLKNYLHLWTRQLTHIYHYYIHGPKGNEISTAKAIGPFNNIDIEISLFEKGKTPKIINLREIQDDMQTLYINTASDSFEFKAHVEGDGVVEGVIRYHPFLYDRETFPDDPCFPSKLKDEDDDDDCFISEKAARGKRPIFECFWNGRLIPYTSVGDFDWCAPPKKRGLVPIECFNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKHDKQIKFTLFKGIITRPDLPTKKQGPWATFSAIEWDGKIYKAGQLVKTIKTLPLCYGSIVRFFLHGDHDGEVYATGGEVQIAMEPQALYDEIKTVPIAKLDRTVAEKTIRKYVEDEMARLPDRLSVTWPEGDELLPNEVRPAGTPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVILHTSSGNKEIISHISQHGGKWPYWFKKMENIQKLGNYTLKLQVVLNESNADTYAGRSLPSKVIKFSVKEGKPEKFSFGLLDSPFRVGVPFNIPLELQDEFGHTTQLLSDIEPVLEASGLSLHYEGITKGPNCVIQGVVAKGPVNSCQGKNFNLKVILPGLKEDSQILKIRLLPGPPHQLKVKPDSEVLVIENGTAFPFQVEVVDESDNITAQPKLIVHCKFLGAPNLPVYTVDCSSSGTSILTGSPIQVQNIKKDQKTLTARIEIPSCKDVSPVEKTIKLLPSSHAACLQIFSVEEQKAIQIKHQDEVTWVAGDVIRNLIFQMYDEGEREINITPSLAEKIKVNWTPEVNKEHLVQGLLPDVQVPTSVKDVRYCHVSFQDDHVCLESAFTVRPLPDDPKHLKCELKGGKTVQMGQELQGEIVVIIADQYGNQISSFSPDSLSTLSITGDGLDSSNLKITLEANSQSVSVQGIRFTPGPPGPKDLCFTWREFSDFLRVQLVSGPPTKLLLMDWPELKESIPVINGRQLENPLIVQLCDQWDNPALVPNVKICLIKASSLRLLPSNQQHKTDDKGRANLGVFTVCAPRGEHTVQVKGVYNKSTIEGPTIKLTILPDPEKPIRLNVKYDQDASFIAGDIFTDFMVSVISESGSVIKNINPTRISMKMWKLSSGMSRPPANAETFSCNKIKGNDKEDGCFYFREKTIPNKVGAYCIQFDFMIDKTNILSSQQVIVDVLPNQPMKLVPDSQPATPAVSNVRSIASRTLVKDLRLSITDNYGNHTGMDLVGTVVATIKGFNEEDTDTPLFIGKVRTLEFPFVKGSAEITTLVLAENSPGRDSTEYFIIFEPRLSTVSGTLESYSLPFMFYNDVKKQQQMAALTKEKDELSKSITMYRSLFDANKQLVDEMKCQAEEAKLKETQLRNELKAYNIDIPATQQTTHIEALLEKKITEQNELKKRPRRLCTLPNYTKRSGDILGKIAHLAQIEDDRAAMVISWHLASDMDCVVTLTTDAARAIYDETQGRQQVLPLDSIYRKTLPDWKRPLPHFRNGKLHFKPFGNPVFARDLLTFPDNIEHCETVFGMLLGDTIILDNLDAANHYRKEVVKITHCPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCVVLGKQIDLIQQYRTALYRLSSVNEDLDNQLQYLHTPDMKKKKQELDEQEKSLKRIEQKLGMTPVRRCNESLCHSPKIEVTECPIPTKRMRRESTRQNRRPKGDVPN", "length": 2007 }, "evidence": [ { "id": "I3L5I4", "url": "https://omabrowser.org/oma/group/I3L5I4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nuclear lumen", "id": "GO:0031981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031981", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "Barr body", "id": "GO:0001740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001740", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "nuclear body", "id": "GO:0016604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016604", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "chromosome, telomeric region", "id": "GO:0000781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000781", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "double-strand break repair", "id": "GO:0006302", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006302", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "chromosome organization", "id": "GO:0051276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051276", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "dosage compensation by inactivation of X chromosome", "id": "GO:0009048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009048", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "nose development", "id": "GO:0043584", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043584", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "negative regulation of double-strand break repair via homologous recombination", "id": "GO:2000042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000042", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" }, { "name": "positive regulation of double-strand break repair via nonhomologous end joining", "id": "GO:2001034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001034", "evidence": [ { "database": "UniProtKB", "id": "I3L5I4", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1091, "end_pos": 1093, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1524, "end_pos": 1526, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1710, "end_pos": 1712, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1964, "end_pos": 1966, "annotation": "n_glycosylation_sequon" }, { "start_pos": 784, "end_pos": 786, "annotation": "n_glycosylation_sequon" }, { "start_pos": 794, "end_pos": 796, "annotation": "n_glycosylation_sequon" }, { "start_pos": 940, "end_pos": 942, "annotation": "n_glycosylation_sequon" }, { "start_pos": 956, "end_pos": 958, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5I4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5I4" }, { "id": "SM00968", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00968" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SMC hinge", "eco_id": "ECO_0000259", "start_pos": 1716, "end_pos": 1843, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1091, "end_pos": 1093 }, { "start_pos": 1524, "end_pos": 1526 }, { "start_pos": 1710, "end_pos": 1712 }, { "start_pos": 1964, "end_pos": 1966 }, { "start_pos": 784, "end_pos": 786 }, { "start_pos": 794, "end_pos": 796 }, { "start_pos": 940, "end_pos": 942 }, { "start_pos": 956, "end_pos": 958 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV71-1", "uniprot_ac": "F1SV71", "uniprot_id": "F1SV71_PIG", "mass": { "chemical_mass": 29486.0, "monoisotopic_mass": 29486.0 }, "refseq": { "ac": "NP_001335724", "name": "matrilysin precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335724" }, "gene_names": [ { "name": "MMP7", "type": "recommended", "evidence": [ { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ] }, { "name": "MMP7", "type": "synonym", "evidence": [ { "id": "NP_001335724", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335724" } ] } ], "protein_names": [ { "name": "Matrix metallopeptidase 7", "type": "synonym", "evidence": [ { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71/entry#names_and_taxonomy" } ] }, { "name": "matrilysin precursor", "type": "synonym", "evidence": [ { "id": "NP_001335724", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335724" } ] }, { "name": "matrilysin-related protein", "type": "synonym", "evidence": [ { "id": "NP_001335724", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335724" } ] }, { "name": "matrix metallopeptidase 7 (matrilysin, uterine)", "type": "synonym", "evidence": [ { "id": "NP_001335724", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335724" } ] } ], "function": [ { "annotation": "Characterization, mRNA expression profile, subcellular distribution and association analysis with piglet diarrhea of porcine matrix metallopeptidase 7 (pMMP7).", "evidence": [ { "database": "RefSeq", "id": "NP_001335724", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335724" }, { "database": "PubMed", "id": "35182673", "url": "https://glygen.org/publication/PubMed/35182673" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MMP7", "url": "https://www.uniprot.org/uniprotkb/F1SV71", "locus": { "chromosome": "9", "start_pos": 33214594, "end_pos": 33225080, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014982", "url": "https://www.ensembl.org/id/ENSSSCG00000014982" } ] } } ], "crossref": [ { "id": "F1SV71", "url": "https://alphafold.ebi.ac.uk/entry/F1SV71", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014982", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014982", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04278", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04278", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397411", "url": "https://www.ncbi.nlm.nih.gov/gene/397411", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001818", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001818", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006026", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006026", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033739", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033739", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:397411", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397411", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GINFLYV", "url": "https://omabrowser.org/oma/group/GINFLYV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV71", "url": "https://www.orthodb.org/?gene=F1SV71", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10201", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10201", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10201:SF143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10201:SF143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00413", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00413", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01471", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01471", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1442490", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1474228", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1474228", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1592389", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1592389", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9009391", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9009391", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001335724", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335724", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QX12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QX12-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV71-1", "url": "https://www.uniprot.org/uniprotkb/F1SV71-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQLAVLCAVCLLPGSLALPLPREAGGMSEQQWEQAQGYLKKFYPSNSKTKDANSLEAKLKQMQKFFRLPITGMLNSHIIKIMQKPRCGVPDVAEYSLFPSQPKWTSKIVTYRIVSYTRDLPHVTVNQLVTKALKMWSNEIPLSFKKVSWGIADIIIGFARGAHGDAYPFDGPGNTLAHAFAPGPGLGGDAHFDEDEHWSDGGSIGINFLYAATHELGHSLGLAHSSDPNAVMYPTYGELYSKDFKLSQDDINGIQKLYGKRSNPEKN", "length": 267, "header": "tr|F1SV71-1|F1SV71_PIG Isoform 1 of Matrix metallopeptidase 7 OS=Sus scrofa OX=9823 GN=MMP7 PE=3 SV=1 CANONICAL=F1SV71-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QX12-1", "url": "https://www.uniprot.org/uniprotkb/F1SV71/entry#A0A5G2QX12-1", "sequence": { "sequence": "MQLAVLCAVCLLPGSLALPLPREAGGMSEQQWEQAQGYLKKFYPSNSKTKDANSLEAKLKQMQKFFRLPITGMLNSHIIKIMQKPRCGVPDVAEYSLFPSQPKWTSKIVTYRIVSYTRDLPHVTVNQLVTKALKMWSNEIPLSFKKVSWGIADIIIGFARGAHGDAYPFDGPGNTLAHAFAPGPGLGGDAHFDEDEHWSDGGSIGINFLYAATHELGHSLGLAHSSDPNAVMYPTYGELYSKDFKLSQDDINGIQKLYEKK", "length": 261, "header": "tr|A0A5G2QX12-1|F1SV71_PIG Computationally mapped isoform of Matrix metallopeptidase 7 OS=Sus scrofa OX=9823 GN=MMP7 PE=3 SV=1 CANONICAL=F1SV71-1" }, "locus": { "chromosome": "9", "start_pos": 33224915, "end_pos": 33217409, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086624.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086624.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062725.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062725.1" } ] } }, { "isoform_ac": "F1SV71-1", "url": "https://www.uniprot.org/uniprotkb/F1SV71/entry#F1SV71-1", "sequence": { "sequence": "MQLAVLCAVCLLPGSLALPLPREAGGMSEQQWEQAQGYLKKFYPSNSKTKDANSLEAKLKQMQKFFRLPITGMLNSHIIKIMQKPRCGVPDVAEYSLFPSQPKWTSKIVTYRIVSYTRDLPHVTVNQLVTKALKMWSNEIPLSFKKVSWGIADIIIGFARGAHGDAYPFDGPGNTLAHAFAPGPGLGGDAHFDEDEHWSDGGSIGINFLYAATHELGHSLGLAHSSDPNAVMYPTYGELYSKDFKLSQDDINGIQKLYGKRSNPEKN", "length": 267, "header": "tr|F1SV71-1|F1SV71_PIG Isoform 1 of Matrix metallopeptidase 7 OS=Sus scrofa OX=9823 GN=MMP7 PE=3 SV=1 CANONICAL=F1SV71-1" }, "locus": { "chromosome": "9", "start_pos": 33224915, "end_pos": 33214875, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016344.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016344.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015905.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015905.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QX12", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Characterization, mRNA expression profile, subcellular distribution and association analysis with piglet diarrhea of porcine matrix metallopeptidase 7 (pMMP7).", "journal": "Gene", "date": "2022-05-05", "authors": "Niu Buyue, Liu Lu, Chen Zhihua, Kou Mingxing, Yang Xiuqin, Sun Yuan, Di Shengwei, Wang Xibiao, Cai Jiancheng, Guo Dongchun", "evidence": [ { "database": "RefSeq", "id": "NP_001335724", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001335724" } ], "reference": [ { "type": "PubMed", "id": "35182673", "url": "https://glygen.org/publication/PubMed/35182673" } ] } ], "pathway": [ { "id": "ssc:397411", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397411", "resource": "KEGG Pathway" }, { "id": "R-SSC-1442490", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "resource": "Reactome", "description": "Collagen degradation" }, { "id": "R-SSC-1474228", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1474228", "resource": "Reactome", "description": "Degradation of the extracellular matrix" }, { "id": "R-SSC-1592389", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1592389", "resource": "Reactome", "description": "Activation of Matrix Metalloproteinases" }, { "id": "R-SSC-9009391", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9009391", "resource": "Reactome", "description": "Extra-nuclear estrogen signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "P09237-1", "protein_name": "Matrilysin", "gene_name": "MMP7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLTVLCAVCLLPGSLALPLPQEAGGMSELQWEQAQDYLKRFYLYDSETKNANSLEAKLKEMQKFFGLPITGMLNSRVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK", "length": 267 }, "evidence": [ { "id": "F1SV71", "url": "https://omabrowser.org/oma/group/F1SV71/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metalloendopeptidase activity", "id": "GO:0004222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004222", "evidence": [ { "database": "UniProtKB", "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "pmid": "" }, { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "pmid": "" }, { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "pmid": "" }, { "name": "collagen catabolic process", "id": "GO:0030574", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030574", "evidence": [ { "database": "UniProtKB", "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SV71", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SV71-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 267, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SV71-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SV71" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" }, { "id": "PIRSR621190-5", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-5" } ], "ann_type": "Motif_Annotation", "uniprotkb_annotation": "Cysteine switch", "eco_id": "ECO_0000256", "start_pos": 85, "end_pos": 92, "start_aa": "Pro", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" }, { "id": "SM00235", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00235" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase metallopeptidase", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 260, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 119, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 119, "end_pos": 119, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 153, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 153, "end_pos": 153, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 163, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 163, "end_pos": 163, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 165, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 165, "end_pos": 165, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 170, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "3", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 170, "end_pos": 170, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 171, "amino_acid": "Gly", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "3", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 171, "end_pos": 171, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 178, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 178, "end_pos": 178, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 187, "amino_acid": "Gly", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 187, "end_pos": 187, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 189, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 189, "end_pos": 189, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 191, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 191, "end_pos": 191, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 193, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "3", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 193, "end_pos": 193, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 196, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_29108", "ligand": "Ca(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 196, "end_pos": 196, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 214, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 214, "end_pos": 214, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 218, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 218, "end_pos": 218, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 224, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 224, "end_pos": 224, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 232, "amino_acid": "Met", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 232, "end_pos": 232, "start_aa": "Met", "end_aa": "Met", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12#function" }, { "id": "A0A5G2QX12", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QX12" }, { "id": "PIRSR621190-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR621190-2" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71#function" }, { "id": "F1SV71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV71" } ], "binding_site_uniprot": 87, "amino_acid": "Cys", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "2", "uniprotkb_ligand_comment": "catalytic;in inhibited form", "eco_id": "ECO_0000256", "start_pos": 87, "end_pos": 87, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSH5-1", "uniprot_ac": "F1SSH5", "uniprot_id": "F1SSH5_PIG", "mass": { "chemical_mass": 146333.0, "monoisotopic_mass": 146333.0 }, "refseq": { "ac": "XP_005673397", "name": "Niemann-Pick C1-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673397" }, "gene_names": [ { "name": "NPC1L1", "type": "recommended", "evidence": [ { "id": "F1SSH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ] }, { "name": "NPC1L1", "type": "synonym", "evidence": [ { "id": "XP_005673397", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673397" } ] } ], "protein_names": [ { "name": "NPC1 like intracellular cholesterol transporter 1", "type": "synonym", "evidence": [ { "id": "F1SSH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSH5/entry#names_and_taxonomy" } ] }, { "name": "Niemann-Pick C1-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_005673397", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673397" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NPC1L1", "url": "https://www.uniprot.org/uniprotkb/F1SSH5", "locus": { "chromosome": "18", "start_pos": 50757649, "end_pos": 50726922, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016746", "url": "https://www.ensembl.org/id/ENSSSCG00000016746" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016746", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016746", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100515982", "url": "https://www.ncbi.nlm.nih.gov/gene/100515982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000731", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000731", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053956", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053956", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515982", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515982", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QVFPYTI", "url": "https://omabrowser.org/oma/group/QVFPYTI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSH5", "url": "https://www.orthodb.org/?gene=F1SSH5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45727", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45727", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45727:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45727:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12349", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12349", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16414", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16414", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22314", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22314", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8963678", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8963678", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005673397", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673397", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "39747", "url": "https://www.rhea-db.org/rhea/39747", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QXL8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8J1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8J1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8J1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8J1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8N3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8N3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R8N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8N3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAD8", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FAD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FAD8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK35", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FK35-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FK35-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSH5-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVEASLKGWLLWALLQHLVQSELYTPIHQPGVCAFYDECGSNPELSGSLASLSNVSCLDNSPARHVTGDHLALLQSICPRLYTGPNTTYACCSSKQLVSLDTSLQVTKALLTRCPSCSNNFVSLHCHNTCSPNQSLFINVTRVAVRGDGQLPAVVAYEAFYQRSFAEQTYESCSRVRIPAAATLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLWEPSQAAGSVIQPLNGEVVPCNQSQGDSVSACSCQDCAASCPVIAQPEALDPTFRMGRMAGSLALIIILCSVFALLALFLLRPRMASRCGKRETPDRKAGIGLAHRLSLSTYSLLSRGFQCWGTWVASWPLTVLAVSIVVVVAMAGGLAFTVLTTDPVDLWSAPNSQAREEKAFHDKYFGPFFRTNQVFLTAPNRPSYRYDSLLLGPKNFSGILSSDLLLEVLELQEKLRHLQVWSPEEQRNISLQDICYAPLNPHNTSLSDCCVNSLLQYFQNNRTHLLLTANQTLSGQTSQVDWRDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAVGGYKGKDFSEAEALIVTFSLNNYPPGDPRLDQAKLWEKAFLEEMQAFQRRMEGVFQVTFMAERSLEDEINSSTFQDLPIFAVSYIVIFLYISLALGTYSSWRRVLVDSKATLGLGGVVVVLGAVMASMGFFAYLGVPSSLVILQVVPFLVLAVGADNIFIFVLEYQRLPRNPGEQREAHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALISGLAVLLDFLLQMSAFVALLSLDSRRQEASRLDFCCCKTPRDVPPPSQAEGLLLLCFRKFYAPFLLHWFTRVVVMLLFLALFGASLYLMCFITVGLDQELALPKDSYLLDYFLFLNRYFEVGPPVYFVTTGGYNFTSEEGINAICSSAGCNNFSLTQKIQYATEFPDQSYLAIPASSWVDDFIDWLSSSSCCRLYISGPNKDEFCPSTVSSLACLKTCISFTTGTVRPTVEQFHRYLPWFLNDMPNIKCPKGGLGAYSTSVNLGPDGQVLASRFMAYHKPLKNSQDYTEALRASRALAANITADLLKVPGTDPDFKVFPYTISNVFYEQYLTVVPEGLFMLGICLVPTFIVCCLLLGMDVRSGLINLFSIVMILVDTVGFMTLWNITYNAVSLINLVTAVGISVEFVSHITRSFAISTKPTRLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKTQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYVGPEVNPALLQQQKREEEAALAKEASCSKHPIPMSTAGNVYVNSGFEHPDKSVNSSDSSQPHNRQKF", "length": 1332, "header": "tr|F1SSH5-1|F1SSH5_PIG Isoform 1 of NPC1 like intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1L1 PE=1 SV=2 CANONICAL=F1SSH5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXL8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH5/entry#A0A5G2QXL8-1", "sequence": { "sequence": "MVEASLKGWLLWALLQHLVQSELYTPIHQPGVCAFYDECGSNPELSGSLASLSNVSCLDNSPARHVTGDHLALLQSICPRLYTGPNTTYACCSSKQLVSLDTSLQVTKALLTRCPSCSNNFVSLHCHNTCSPNQSLFINVTRVAVRGDGQLPAVVAYEAFYQRSFAEQTYESCSRVRIPAAATLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLWEPSQAAGSVIQPLNGEVVPCNQSQGDSVSACSCQDCAASCPVIAQPEALDPTFRMGRMAGSLALIIILCSVFALLALFLLRPRMASRCGKRETPDRKAGIGLAHRLSLSTYSLLSRGFQCWGTWVASWPLTVLAVSIVVVVAMAGGLAFTVLTTDPVDLWSAPNSQAREEKAFHDKYFGPFFRTNQVFLTAPNRPSYRYDSLLLGPKNFSGILSSDLLLEVLELQEKLRHLQVWSPEEQRNISLQDICYAPLNPHNTSLSDCCVNSLLQYFQNNRTHLLLTANQTLSGQTSQVDWRDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAVGGYKGKDFSEAEALIVTFSLNNYPPGDPRLDQAKLWEKAFLEEMQAFQRRMEGVFQVTFMAERSLEDEINSSTFQDLPIFAVSYIVIFLYISLALGTYSSWRRVLVDSKATLGLGGVVVVLGAVMASMGFFAYLGVPSSLVILQVVPFLVLAVGADNIFIFVLEYQRLPRNPGEQREAHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALISGLAVLLDFLLQMSAFVALLSLDSRRQEASRLDFCCCKTPRDVPPPSQAEGLLLLCFRKFYAPFLLHWFTRVVVVGPPVYFVTTGGYNFTSEEGINAICSSAGCNNFSLTQKIQYATEFPDQSYLAIPASSWVDDFIDWLSSSSCCRLYISGPNKDEFCPSTVSSLACLKTCISFTTGTVRPTVEQFHRYLPWFLNDMPNIKCPKGGLGAYSTSVNLGPDGQVLASRFMAYHKPLKNSQDYTEALRASRALAANITADLLKVPGTDPDFKVFPYTISNVFYEQYLTVVPEGLFMLGICLVPTFIVCCLLLGMDVRSGLINLFSIVMILVDTVGFMTLWNITYNAVSLINLVTAVGISVEFVSHITRSFAISTKPTRLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKTQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYVGPEVNPALLQQQKREEEAALAKEASCSKHPIPMSTAGNVYVNSGFEHPDKSVNSSDSSQPHNRQKF", "length": 1286, "header": "tr|A0A5G2QXL8-1|F1SSH5_PIG Computationally mapped isoform of NPC1 like intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1L1 PE=1 SV=1 CANONICAL=F1SSH5-1" }, "locus": { "chromosome": "18", "start_pos": 50754078, "end_pos": 50727074, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088341.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088341.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069617.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069617.1" } ] } }, { "isoform_ac": "A0A5G2R8J1-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH5/entry#A0A5G2R8J1-1", "sequence": { "sequence": "MVEASLKGWLLWALLQHLVQSELYTPIHQPGVCAFYDECGSNPELSGSLASLSNVSCLDNSPARHVTGDHLALLQSICPRLYTGPNTTYACCSSKQLVSLDTSLQVTKALLTRCPSCSNNFVSLHCHNTCSPNQSLFINVTRVAVRGDGQLPAVVAYEAFYQRSFAEQTYESCSRVRIPAAATLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLWEPSQAAGSVIQPLNGEVVPCNQSQGDSVSACSCQDCAASCPVIAQPEALDPTFRMGRMAGSLALIIILCSVFALLALFLLRPRMASRCGKRETPDRKAGIGLAHRLSLSTYSLLSRGFQCWGTWVASWPLTVLAVSIVVVVAMAGGLAFTVLTTDPVDLWSAPNSQAREEKAFHDKYFGPFFRTNQVFLTAPNRPSYRYDSLLLGPKNFSGILSSDLLLEVLELQEKLRHLQVWSPEEQRNISLQDICYAPLNPHNTSLSDCCVNSLLQYFQNNRTHLLLTANQTLSGQTSQVDWRDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAVGGYKGKDFSEAEALIVTFSLNNYPPGDPRLDQAKLWEKAFLEEMQAFQRRMEGVFQVTFMAERSLEDEINSSTFQDLPIFAVSYIVIFLYISLALGTYSSWRRVLVDSKATLGLGGVVVVLGAVMASMGFFAYLGVPSSLVILQVVPFLVLAVGADNIFIFVLEYQEP", "length": 725, "header": "tr|A0A5G2R8J1-1|F1SSH5_PIG Computationally mapped isoform of NPC1 like intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1L1 PE=1 SV=1 CANONICAL=F1SSH5-1" }, "locus": { "chromosome": "18", "start_pos": 50735629, "end_pos": 50727074, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078642.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078642.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073588.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073588.1" } ] } }, { "isoform_ac": "A0A5G2R8N3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH5/entry#A0A5G2R8N3-1", "sequence": { "sequence": "APHLLLCSPWHWGAVQSELYTPIHQPGVCAFYDECGSNPELSGSLASLSNVSCLDNSPARHVTGDHLALLQSICPRLYTGPNTTYACCSSKQLVSLDTSLQVTKALLTRCPSCSNNFVSLHCHNTCSPNQSLFINVTRVAVRGDGQLPAVVAYEAFYQRSFAEQTYESCSRVRIPAAATLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLWEPSQAAGSVIQPLNGEVVPCNQSQGDSVSACSCQDCAASCPVIAQPEALDPTFRMGRMAGSLALIIILCSVFALLALFLLRPRMASRCGKRETPDRKAGIGLAHRLSLSTYSLLSRGFQCWGTWVASWPLTVLAVSIVVVVAMAGGLAFTVLTTDPVDLWSAPNSQAREEKAFHDKYFGPFFRTNQVFLTAPNRPSYRYDSLLLGPKNFSGILSSDLLLEVLELQEKLRHLQVWSPEEQRNISLQDICYAPLNPHNTSLSDCCVNSLLQYFQNNRTHLLLTANQTLSGQTSQVDWRDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAVGGYKGKDFSEAEALIVTFSLNNYPPGDPRLDQAKLWEKAFLEEMQAFQRRMEGVFQVTFMAERSLEDEINSSTFQDLPIFAVSYIVIFLYISLALGTYSSWRRVLVDSKATLGLGGVVVVLGAVMASMGFFAYLGVPSSLVILQVVPFLVLAVGADNIFIFVLEYQRLPRNPGEQREAHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALISGLAVLLDFLLQMSAFVALLSLDSRRQEASRLDFCCCKTPRDVPPPSQAEGLLLLCFRKFYAPFLLHWFTRVVVMLLFLALFGASLYLMCFITVGLDQELALPKDSYLLDYFLFLNRYFEVGPPVYFVTTGGYNFTSEEGINAICSSAGCNNFSLTQKIQYATEFPDQSYLAIPASSWVDDFIDWLSSSSCCRLYISGPNKDEFCPSTVSSLACLKTCISFTTGTVRPTVEQFHPSRFMAYHKPLKNSQDYTEALRASRALAANITADLLKVPGTDPDFKVFPYTISNVFYEQYLTVVPEGLFMLGICLVPTFIVCCLLLGMDVRSGLINLFSIVMILVDTVGFMTLWNITYNAVSLINLVTAVGISVEFVSHITRSFAISTKPTRLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKTQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYVGPEVNPALLQQQKREEEAALAKEASCSKHPIPMSTAGNVYVNSGFEHPDKSVNSSDSSQPHNRQKF", "length": 1292, "header": "tr|A0A5G2R8N3-1|F1SSH5_PIG Computationally mapped isoform of NPC1 like intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1L1 PE=1 SV=2 CANONICAL=F1SSH5-1" }, "locus": { "chromosome": "18", "start_pos": 50754078, "end_pos": 50727897, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085914.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085914.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073628.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073628.2" } ] } }, { "isoform_ac": "A0A8W4FAD8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH5/entry#A0A8W4FAD8-1", "sequence": { "sequence": "APHLLLCSPWHWGAVQSELYTPIHQPGVCAFYDECGSNPELSGSLASLSNVSCLDNSPARHVTGDHLALLQSICPRLYTGPNTTYACCSSKQLVSLDTSLQVTKALLTRCPSCSNNFVSLHCHNTCSPNQSLFINVTRVAVRGDGQLPAVVAYEAFYQRSFAEQTYESCSRVRIPAAATLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLWEPSQAAGSVIQPLNGEVVPCNQSQGDSVSACSCQDCAASCPVIAQPEALDPTFRMGRMAGSLALIIILCSVFALLALFLLRPRMASRCGKRETPDRKAGIGLAHRLSLSTYSLLSRGFQCWGTWVASWPLTVLAVSIVVVVAMAGGLAFTVLTTDPVDLWSAPNSQAREEKAFHDKYFGPFFRTNQVFLTAPNRPSYRYDSLLLGPKNFSGILSSDLLLEVLELQEKLRHLQVWSPEEQRNISLQDICYAPLNPHNTSLSDCCVNSLLQYFQNNRTHLLLTANQTLSGQTSQVDWRDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAVGGYKGKDFSEAEALIVTFSLNNYPPGDPRLDQAKLWEKAFLEEMQAFQRRMEGVFQVTFMAERSLEDEINSSTFQDLPIFAVSYIVIFLYISLALGTYSSWRRVLVDSKATLGLGGVVVVLGAVMASMGFFAYLGVPSSLVILQVVPFLVLAVGADNIFIFVLEYQCPKEPS", "length": 725, "header": "tr|A0A8W4FAD8-1|F1SSH5_PIG Computationally mapped isoform of NPC1 like intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1L1 PE=1 SV=1 CANONICAL=F1SSH5-1" }, "locus": { "chromosome": "18", "start_pos": 50734670, "end_pos": 50727897, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103845.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103845.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076242.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076242.1" } ] } }, { "isoform_ac": "A0A8W4FK35-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH5/entry#A0A8W4FK35-1", "sequence": { "sequence": "APHLLLCSPWHWGAVQSELYTPIHQPGVCAFYDECGSNPELSGSLASLSNVSCLDNSPARHVTGDHLALLQSICPRLYTGPNTTYACCSSKQLVSLDTSLQVTKALLTRCPSCSNNFVSLHCHNTCSPNQSLFINVTRVAVRGDGQLPAVVAYEAFYQRSFAEQTYESCSRVRIPAAATLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLWEPSQAAGSVIQPLNGEVVPCNQSQGDSVSACSCQDCAASCPVIAQPEALDPTFRMGRMAGSLALIIILCSVFALLALFLLRPRMASRCGKRETPDRKAGIGLAHRLSLSTYSLLSRGFQCWGTWVASWPLTVLAVSIVVVVAMAGGLAFTVLTTDPVDLWSAPNSQAREEKAFHDKYFGPFFRTNQVFLTAPNRPSYRYDSLLLGPKNFSGILSSDLLLEVLELQEKLRHLQVWSPEEQRNISLQDICYAPLNPHNTSLSDCCVNSLLQYFQNNRTHLLLTANQTLSGQTSQVDWRDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAVGGYKGKDFSEAEALIVTFSLNNYPPGDPRLDQAKLWEKAFLEEMQAFQRRMEGVFQVTFMAERSLEDEINSSTFQDLPIFAVSYIVIFLYISLALGTYSSWRRVLVDSKATLGLGGVVVVLGAVMASMGFFAYLGVPSSLVILQVVPFLVLAVGADNIFIFVLEYQRLPRNPGEQREAHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALISGLAVLLDFLLQMSAFVALLSLDSRRQEASRLDFCCCKTPRDVPPPSQAEGLLLLCFRKFYAPFLLHWFTRVVVMLLFLALFGASLYLMCFITVGLDQELALPKDSYLLDYFLFLNRYFEVGPPVYFVTTGGYNFTSEEGINAICSSAGCNNFSLTQKIQYATEFPDQSYLAIPASSWVDDFIDWLSSSSCCRLYISGPNKDEFCPSTVSSLACLKTCISFTTGTVRPTVGWGVSSRFMAYHKPLKNSQDYTEALRASRALAANITADLLKVPGTDPDFKVFPYTISNVFYEQYLTVVPEGLFMLGICLVPTFIVCCLLLGMDVRSGLINLFSIVMILVDTVGFMTLWNITYNAVSLINLVTAVGISVEFVSHITRSFAISTKPTRLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKTQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYVGPEVNPALLQQQKREEEAALAKEASCSKHPIPMSTAGNVYVNSGFEHPDKSVNSSDSSQPHNRQKF", "length": 1292, "header": "tr|A0A8W4FK35-1|F1SSH5_PIG Computationally mapped isoform of NPC1 like intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1L1 PE=1 SV=1 CANONICAL=F1SSH5-1" }, "locus": { "chromosome": "18", "start_pos": 50754078, "end_pos": 50727897, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102175.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102175.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079260.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079260.1" } ] } }, { "isoform_ac": "F1SSH5-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH5/entry#F1SSH5-1", "sequence": { "sequence": "MVEASLKGWLLWALLQHLVQSELYTPIHQPGVCAFYDECGSNPELSGSLASLSNVSCLDNSPARHVTGDHLALLQSICPRLYTGPNTTYACCSSKQLVSLDTSLQVTKALLTRCPSCSNNFVSLHCHNTCSPNQSLFINVTRVAVRGDGQLPAVVAYEAFYQRSFAEQTYESCSRVRIPAAATLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLWEPSQAAGSVIQPLNGEVVPCNQSQGDSVSACSCQDCAASCPVIAQPEALDPTFRMGRMAGSLALIIILCSVFALLALFLLRPRMASRCGKRETPDRKAGIGLAHRLSLSTYSLLSRGFQCWGTWVASWPLTVLAVSIVVVVAMAGGLAFTVLTTDPVDLWSAPNSQAREEKAFHDKYFGPFFRTNQVFLTAPNRPSYRYDSLLLGPKNFSGILSSDLLLEVLELQEKLRHLQVWSPEEQRNISLQDICYAPLNPHNTSLSDCCVNSLLQYFQNNRTHLLLTANQTLSGQTSQVDWRDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAVGGYKGKDFSEAEALIVTFSLNNYPPGDPRLDQAKLWEKAFLEEMQAFQRRMEGVFQVTFMAERSLEDEINSSTFQDLPIFAVSYIVIFLYISLALGTYSSWRRVLVDSKATLGLGGVVVVLGAVMASMGFFAYLGVPSSLVILQVVPFLVLAVGADNIFIFVLEYQRLPRNPGEQREAHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALISGLAVLLDFLLQMSAFVALLSLDSRRQEASRLDFCCCKTPRDVPPPSQAEGLLLLCFRKFYAPFLLHWFTRVVVMLLFLALFGASLYLMCFITVGLDQELALPKDSYLLDYFLFLNRYFEVGPPVYFVTTGGYNFTSEEGINAICSSAGCNNFSLTQKIQYATEFPDQSYLAIPASSWVDDFIDWLSSSSCCRLYISGPNKDEFCPSTVSSLACLKTCISFTTGTVRPTVEQFHRYLPWFLNDMPNIKCPKGGLGAYSTSVNLGPDGQVLASRFMAYHKPLKNSQDYTEALRASRALAANITADLLKVPGTDPDFKVFPYTISNVFYEQYLTVVPEGLFMLGICLVPTFIVCCLLLGMDVRSGLINLFSIVMILVDTVGFMTLWNITYNAVSLINLVTAVGISVEFVSHITRSFAISTKPTRLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKTQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYVGPEVNPALLQQQKREEEAALAKEASCSKHPIPMSTAGNVYVNSGFEHPDKSVNSSDSSQPHNRQKF", "length": 1332, "header": "tr|F1SSH5-1|F1SSH5_PIG Isoform 1 of NPC1 like intracellular cholesterol transporter 1 OS=Sus scrofa OX=9823 GN=NPC1L1 PE=1 SV=2 CANONICAL=F1SSH5-1" }, "locus": { "chromosome": "18", "start_pos": 50754078, "end_pos": 50727074, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018228.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018228.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017736.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017736.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 905, "start_aa": "Thr", "end_pos": 905, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr905", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R8N3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R8N3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515982", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515982", "resource": "KEGG Pathway" }, { "id": "R-SSC-8963678", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8963678", "resource": "Reactome", "description": "Intestinal lipid absorption" } ], "orthologs": [ { "uniprot_canonical_ac": "F4JTN0-1", "protein_name": "Patched family protein", "gene_name": "ATNPC1-2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAIPTKLLLLQLFTFSLLLTANLTHSEPSNNRHSKEYCAMYDICGHRSDGKVLNCPYASPSIQPDELFSAKIQSLCPTISGNVCCTETQFDTLRSQVQQAVPFLVGCPACLRNFLNLFCELSCSPNQSLFINVTSVAEVSGNLTVDGIDYHITDTFGEGLYESCKEVKFGTMNTRAINFVGGGAKNFREWFTFIGQKAPSGFPGSPYAINFKSSIPESSAMVPMNVSVYSCGDTSLGCSCGDCPSSPACSSPEPLPPHDEDSCSIRIGPLKVRCIELSMALVYVLLVSCFFGWAGLNRRRNTTQPLDSSKPLLHPVEEDGINSEMKENILGVKVQRHAQLSPVQRYMAKFYRSYGSWIARNPSLVLFMSVAIVLALCSGLYNFKVETRPEKLWVGPESKAAEEKKFFDTHLSPFYRIEQLILATVPDPKSGRAPSIVTDENILLLFDIQQKVDQIRGNYSGSEVSLPDICLKPLGEDCATQSILQYFKMDSGTFDDYGGVEHAEYCFQHYTSSETCLSAFQAPVDPSAVLGGFSGNNYSEATAFVVTYPVNNVIGDSSNENARAVAWEKSFIQLAKEELLPMVRSKNLSLSFSSESSIEEELKRESTADVITIAASYLVMFVYISVTLGDAPQFYTFYISSKVLLGLSGVVLVLLSVLGSVGVFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPREVSLEQRISSALVEVGPSITLASLSEVLAFAVGAFVPMPACRIFSMFAALAIMLDFFLQITAFVALIVFDCKRSADNRIDCFPCIKVPSSSRESVEGGREPGFLERYMKEVHAPVLGLWGVKMVVVAVFFAFALASIAISPRLETGLEQKIVLPRDSYLQDYFDSLSEYLRVGPPLYFVVKNYNYSSESRHTNQLCSISQCNSNSLLNEISRASQASDTSYIAKPAASWLDDFLVWLSPEAFGCCRKFTNGSYCPPDDQPPCCTAEEDICSLDGICKDCTTCFRHSDLVQDRPSTAQFREKLPWFLNALPSADCAKGGHGAYTNSVDLKGYESGVIQASEFRTYHTPLNTQGDYVNALRAAREFSSRISNSLKIDIFPYSVFYIFFEQYLNIWTVALTNLAIAIGAIFIVCWLITSSAWSSAIIVLVLVMILVDLMGMMVILGIQLNAVSVVNLIMSIGIAVEFCVHISHAFLMSSGDREHRAREALETMGASVFSGITLTKLVGVIVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSLAGPPQLNLDIEQQQTDEASSSLLN", "length": 1273 }, "evidence": [ { "id": "F1SSH5", "url": "https://omabrowser.org/oma/group/F1SSH5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "G3HMB0-1", "protein_name": "NPC1-like intracellular cholesterol transporter 1", "gene_name": "Npc1l1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAGLQRWLLWALLLNLAQGEIYTPIHKAGFCTFYEECGKNPELSGGLTSLSNVSCLSNTPARHVTGDHLTLLQSICPRLYNGTNTTYACCSAKQLVALEKSMSITKALLTRCPACSDNFVSLHCHNTCSPDQSLFINVTRVVVQKDPQQPPAVVAYEAFYQRSFAEKAYESCSRVRIPAAASLAVGTMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLMESGQAPADGMQPLNGEITPCNQSQGEDLAACSCQDCAASCPVIPQPPALRPSFYMGKMPGWLALIIIFSAVFVLLTAVLIYLRVVSNRNKSKTADFQEAPKHPHKRRFSLHIILGRFFHSWGTRVASWPCTVLVLSFIVVIALSVGLRYIELTTDPVELWSAPKSQARKEKAFHDEHFGPFFRTNQVFVTARNRSSYRYDSLLLGPRNFSGILSLDLVLELLELQERLRHLQVWSPEAQRNISLQDICYAPLKPHNTSLSDCCVNSLLQYFQNNRTLLLLTANQTLGGQTSLVDWRDHFLYCANAPLTFKDGTSLALSCIADYGAPVFPFLAVGGYQGTDYSEAEALIITFSLNNYPADDPRMAQAKLWEEAFLKEMQAFQDSMADKFQVAFSAERSLEDEINRTTIQDLPVFAISYIIVFLYISLALGSYSRWSRVVVDSKATLGLGGVAVVLGAVVAAMGFYSYLGVPSSLVIIQVVPFLVLAVGADNIFIFVLEYQRLPRRPGEQREAHIGRALGSVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTAGLAIILDFLLQMTAFVALLSLDSKRQEASRPDILCCLSPRKLPPPEQKEGLLLRFFRKIYAPFLLHRFIRPAVLLLFLALFGANLYLMCHISVGLDQELALPEDSYLIDYFLFLNQYFEVGPPVYFVTTSGYNFSSEAGMNAICSSAGCDSFSLTQKIQYASEFPEQSYIGIAASSWVDDFIDWLTPSSCCRLYAFGPNKGDFCPSTDTSLNCLKNCMNFTLGPVRPTVEQFHKYLPWFLDDPPNIRCPKGGLAAYRTSVNLSSDGQVIASQFMAYHRPLRNSQDFTEALRTSRLLAANITAELRKVPGTDPNFEVFPYTISNVFYEQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDMRSGILNLLSIIMILVDTIGLMAVWGITYNAVSLINLVTAVGMSVEFVSHLTRSFAVSTKPTRLERAKDATVSMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNPDLVLEEQLATEAAVAPEPSCPKYPFPANDYVNHSFEEATPGPSAASSSLPKSGQKF", "length": 1328 }, "evidence": [ { "id": "F1SSH5", "url": "https://omabrowser.org/oma/group/F1SSH5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q551C5-1", "protein_name": "SSD domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKIIVFLIFFLSIINIIQCQSPYPYNTTLGCSMYGVSSSFVEAKDFPPLNNTEIAPNTCQLTHPEYSIESCCNYNQTLILQTNMLVAGGIFGRCSSCMVNLYNLWCASSCSPYQKSFMVPTKVDNKTDQIISIDFVLHPDFANGLYNSCRDVHANGAQPFGVMFPTAQLFFTGVFSAVNPTFKELNWVFNNEGYNDAIVPCSEGCSCDQCRDACLPPPSYKDIGLLNDTIIQTHLLIEVPHLTIWIVWSFLLFLLSLLFGFSIWLIFKYSSKIRYFKGKKFKTVMMIILGILFICTVLIPFVTTHQMIDGKTASCMWKLDDGKEWNCSFAMGVSIYIMITLLLLSIVILACIIVDKTASNRNSRRILGISGGIINQQVNNDEIQNTNNNRNNNNNSGSNYSNIFQKVFYWYGINITKRPIIVLICCLLFTIGIGIGIISLEIETDPVKLWVSPDSRSAIEKQYFDDHFGPFYRVEQLILIPKQKNLSTIFNYDLFKSLIDIETQLMKNTSVKLNDGSNRIITLDQLCFEPTKRGCLVESITGIFQRDQNKLNQQKDNVIGWFEQCKSQLLSPECMDSTGVPVNPKIVLGGWNDNSTLAKAFVTTFLLNNPDSMIDRSMMWEQVWLNKIQEISNDPSCPFEISFNAQRSVQDELAREGNADIPTIIVSYFVMFLYISLSLGSYYPFPRRFNSFFIRSRFALGLSGICIVACSIIISVGICSILRIKATLIISEVIPFLVLAIGVDNIFILVNTFESLHVASSSSSSSISGFNQNHHQMPTPEESFARTLAKVGPSIALASLSESFAFLLGSLTKMPAVKAFSFYASIAVFFDFLLQISAFACLLVLDTKRLQSRRVDCLPCLSLNGDNSDLEDDPFDNIDQQLNSNNNNNNNNLNNNDNNNNNNQEEIENEPLLINGEDDDRNDNAHNFNYDVDALNVVDGLNINNEESSPLSKKRMLKKKSKKKTTLLKELFTKYYAPFLVHPISKLLIIIFFIAMLLFSINYAYQIPIGLDQKVALPRNSYLQAYFTNMNQFLEVGPPMYIVVKGNYDFSIPSIQNQFCTVGGCNNNSVINTFDNAPFISPGISSWLDDMLQWSNTVGCCTAFDNGTYCNSDEPGCDQQCFPLEKSGRPDPSLFKKYLPAFLNFTNTDQCPLAGLAYTGDVKFNSDGSIAATRFDAYHTTLRTQNDFINALATSYYLADHSDAQVFTYSIFYCYFEAYLTIKQVALKGILLALGSVFFVSLAILMNPLVSILVVLCVGMTVVDLLAVMTLWDISLNAISVVNLIMAVGISIEFCVHIASTFIRSPKHYSRDEKVKFAISEMGANIFSGIFITKLLGCVVLAFSKSEIFIIYYFKMYISICLLAAVHGLVLLPVLLSIFGTNKFSFEKFLTFKKDS", "length": 1397 }, "evidence": [ { "id": "F1SSH5", "url": "https://omabrowser.org/oma/group/F1SSH5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6T3U3-1", "protein_name": "NPC1-like intracellular cholesterol transporter 1", "gene_name": "Npc1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAWLGWLLWALLLSAAQGELYTPKHEAGVCTFYEECGKNPELSGGLTSLSNVSCLSNTPARHVTGEHLALLQRICPRLYNGPNTTFACCSTKQLLSLESSMSITKALLTRCPACSDNFVSLHCHNTCSPDQSLFINVTRVVERGAGEPPAVVAYEAFYQRSFAEKAYESCSQVRIPAAASLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLLEPGQALPDGIQPLNGKIAPCNESQGDDSAVCSCQDCAASCPVIPPPEALRPSFYMGRMPGWLALIIIFTAVFVLLSAVLVRLRVVSNRNKNKAEGPQEAPKLPHKHKLSPHTILGRFFQNWGTRVASWPLTVLALSFIVVIALAAGLTFIELTTDPVELWSAPKSQARKEKSFHDEHFGPFFRTNQIFVTARNRSSYKYDSLLLGSKNFSGILSLDFLLELLELQERLRHLQVWSPEAERNISLQDICYAPLNPYNTSLSDCCVNSLLQYFQNNRTLLMLTANQTLNGQTSLVDWKDHFLYCANAPLTFKDGTSLALSCMADYGAPVFPFLAVGGYQGTDYSEAEALIITFSLNNYPADDPRMAQAKLWEEAFLKEMESFQRNTSDKFQVAFSAERSLEDEINRTTIQDLPVFAVSYIIVFLYISLALGSYSRCSRVAVESKATLGLGGVIVVLGAVLAAMGFYSYLGVPSSLVIIQVVPFLVLAVGADNIFIFVLEYQRLPRMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAIILDFLLQMTAFVALLSLDSKRQEASRPDVLCCFSTRKLPPPKEKEGLLLRFFRKIYAPFLLHRFIRPVVMLLFLTLFGANLYLMCNINVGLDQELALPKDSYLIDYFLFLNRYLEVGPPVYFVTTSGFNFSSEAGMNATCSSAGCKSFSLTQKIQYASEFPDQSYVAIAASSWVDDFIDWLTPSSSCCRLYIRGPHKDEFCPSTDTSFNCLKNCMNRTLGPVRPTAEQFHKYLPWFLNDPPNIRCPKGGLAAYRTSVNLSSDGQVIASQFMAYHKPLRNSQDFTEALRASRLLAANITADLRKVPGTDPNFEVFPYTISNVFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDMCSGILNLLSIIMILVDTIGLMAVWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATVFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVQEEKLASEAAVAPEPSCPQYPSPADADANVNYGFAPELAHGANAARSSLPKSDQKF", "length": 1331 }, "evidence": [ { "id": "F1SSH5", "url": "https://omabrowser.org/oma/group/F1SSH5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6T3U4-1", "protein_name": "NPC1-like intracellular cholesterol transporter 1", "gene_name": "Npc1l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAWQGWLLWALLLNSAQGELYTPTHKAGFCTFYEECGKNPELSGGLTSLSNISCLSNTPARHVTGDHLALLQRVCPRLYNGPNDTYACCSTKQLVSLDSSLSITKALLTRCPACSENFVSIHCHNTCSPDQSLFINVTRVVQRDPGQLPAVVAYEAFYQRSFAEKAYESCSRVRIPAAASLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLLEPGQALADGMKPLDGKITPCNESQGEDSAACSCQDCAASCPVIPPPPALRPSFYMGRMPGWLALIIIFTAVFVLLSVVLVYLRVASNRNKNKTAGSQEAPNLPRKRRFSPHTVLGRFFESWGTRVASWPLTVLALSFIVVIALSVGLTFIELTTDPVELWSAPKSQARKEKAFHDEHFGPFFRTNQIFVTAKNRSSYKYDSLLLGPKNFSGILSLDLLQELLELQERLRHLQVWSHEAQRNISLQDICYAPLNPHNTSLTDCCVNSLLQYFQNNHTLLLLTANQTLNGQTSLVDWKDHFLYCANAPLTYKDGTALALSCIADYGAPVFPFLAVGGYQGTDYSEAEALIITFSINNYPADDPRMAHAKLWEEAFLKEMQSFQRSTADKFQIAFSAERSLEDEINRTTIQDLPVFAISYLIVFLYISLALGSYSRWSRVAVDSKATLGLGGVAVVLGAVVAAMGFYSYLGVPSSLVIIQVVPFLVLAVGADNIFIFVLEYQRLPRMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFLGALTSMPAVRTFALTSGLAIIFDFLLQMTAFVALLSLDSKRQEASRPDVVCCFSSRNLPPPKQKEGLLLCFFRKIYTPFLLHRFIRPVVLLLFLVLFGANLYLMCNISVGLDQDLALPKDSYLIDYFLFLNRYLEVGPPVYFDTTSGYNFSTEAGMNAICSSAGCESFSLTQKIQYASEFPNQSYVAIAASSWVDDFIDWLTPSSSCCRIYTRGPHKDEFCPSTDTSFNCLKNCMNRTLGPVRPTTEQFHKYLPWFLNDTPNIRCPKGGLAAYRTSVNLSSDGQIIASQFMAYHKPLRNSQDFTEALRASRLLAANITAELRKVPGTDPNFEVFPYTISNVFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDIRSGILNLLSIIMILVDTIGLMAVWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATIFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVLEEKLATEAAMVSEPSCPQYPFPADANTSDYVNYGFNPEFIPEINAASSSLPKSDQKF", "length": 1333 }, "evidence": [ { "id": "F1SSH5", "url": "https://omabrowser.org/oma/group/F1SSH5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UHC9-1", "protein_name": "NPC1-like intracellular cholesterol transporter 1", "gene_name": "NPC1L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAEAGLRGWLLWALLLRLAQSEPYTTIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASLSITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCAASCPAIARPQALDSTFYLGQMPGSLVLIIILCSVFAVVTILLVGFRVAPARDKSKMVDPKKGTSLSDKLSFSTHTLLGQFFQGWGTWVASWPLTILVLSVIPVVALAAGLVFTELTTDPVELWSAPNSQARSEKAFHDQHFGPFFRTNQVILTAPNRSSYRYDSLLLGPKNFSGILDLDLLLELLELQERLRHLQVWSPEAQRNISLQDICYAPLNPDNTSLYDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDWKDHFLYCANAPLTFKDGTALALSCMADYGAPVFPFLAIGGYKGKDYSEAEALIMTFSLNNYPAGDPRLAQAKLWEEAFLEEMRAFQRRMAGMFQVTFMAERSLEDEINRTTAEDLPIFATSYIVIFLYISLALGSYSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVLSVGADNIFIFVLEYQRLPRRPGEPREVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDVCCCVKPQELPPPGQGEGLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALPKDSYLLDYFLFLNRYFEVGAPVYFVTTLGYNFSSEAGMNAICSSAGCNNFSFTQKIQYATEFPEQSYLAIPASSWVDDFIDWLTPSSCCRLYISGPNKDKFCPSTVNSLNCLKNCMSITMGSVRPSVEQFHKYLPWFLNDRPNIKCPKGGLAAYSTSVNLTSDGQVLDTVAILSPRLEYSGTISAHCNLYLLDSTSRFMAYHKPLKNSQDYTEALRAARELAANITADLRKVPGTDPAFEVFPYTITNVFYEQYLTILPEGLFMLSLCLVPTFAVSCLLLGLDLRSGLLNLLSIVMILVDTVGFMALWGISYNAVSLINLVSAVGMSVEFVSHITRSFAISTKPTWLERAKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIFFFRLNLLITLLGLLHGLVFLPVILSYVGPDVNPALALEQKRAEEAVAAVMVASCPNHPSRVSTADNIYVNHSFEGSIKGAGAISNFLPNNGRQF", "length": 1359 }, "evidence": [ { "id": "F1SSH5", "url": "https://omabrowser.org/oma/group/F1SSH5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "cholesterol metabolic process", "id": "GO:0008203", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008203", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" }, { "name": "cholesterol transport", "id": "GO:0030301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030301", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" }, { "name": "intestinal cholesterol absorption", "id": "GO:0030299", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030299", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" }, { "name": "cholesterol homeostasis", "id": "GO:0042632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042632", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" }, { "name": "sterol transport", "id": "GO:0015918", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015918", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "lipid transporter activity", "id": "GO:0005319", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005319", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" }, { "name": "cholesterol binding", "id": "GO:0015485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015485", "evidence": [ { "database": "UniProtKB", "id": "F1SSH5", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1076, "end_pos": 1078, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1161, "end_pos": 1163, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1319, "end_pos": 1321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 245, "end_pos": 247, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 465, "end_pos": 467, "annotation": "n_glycosylation_sequon" }, { "start_pos": 480, "end_pos": 482, "annotation": "n_glycosylation_sequon" }, { "start_pos": 498, "end_pos": 500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 507, "end_pos": 509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" }, { "start_pos": 627, "end_pos": 629, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" }, { "start_pos": 910, "end_pos": 912, "annotation": "n_glycosylation_sequon" }, { "start_pos": 928, "end_pos": 930, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "39747", "name": "", "equation": "cholesterol(in) = cholesterol(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "39747", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/39747" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSH5" }, { "id": "PS50156", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50156" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SSD", "eco_id": "ECO_0000259", "start_pos": 633, "end_pos": 798, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 905 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1076, "end_pos": 1078 }, { "start_pos": 1161, "end_pos": 1163 }, { "start_pos": 1319, "end_pos": 1321 }, { "start_pos": 133, "end_pos": 135 }, { "start_pos": 139, "end_pos": 141 }, { "start_pos": 245, "end_pos": 247 }, { "start_pos": 432, "end_pos": 434 }, { "start_pos": 465, "end_pos": 467 }, { "start_pos": 480, "end_pos": 482 }, { "start_pos": 498, "end_pos": 500 }, { "start_pos": 507, "end_pos": 509 }, { "start_pos": 54, "end_pos": 56 }, { "start_pos": 627, "end_pos": 629 }, { "start_pos": 86, "end_pos": 88 }, { "start_pos": 910, "end_pos": 912 }, { "start_pos": 928, "end_pos": 930 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SU01-1", "uniprot_ac": "F1SU01", "uniprot_id": "F1SU01_PIG", "mass": { "chemical_mass": 119221.0, "monoisotopic_mass": 119221.0 }, "refseq": { "ac": "XP_020953359", "name": "ubiquitin carboxyl-terminal hydrolase 48 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953359" }, "gene_names": [ { "name": "USP48", "type": "recommended", "evidence": [ { "id": "F1SU01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ] }, { "name": "USP48", "type": "synonym", "evidence": [ { "id": "XP_020953359", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953359" } ] } ], "protein_names": [ { "name": "Ubiquitin carboxyl-terminal hydrolase 48", "type": "recommended", "evidence": [ { "id": "F1SU01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU01/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "F1SU01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU01/entry#names_and_taxonomy" } ] }, { "name": "Deubiquitinating enzyme 48", "type": "synonym", "evidence": [ { "id": "F1SU01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU01/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin thioesterase 48", "type": "synonym", "evidence": [ { "id": "F1SU01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU01/entry#names_and_taxonomy" } ] }, { "name": "Ubiquitin-specific-processing protease 48", "type": "synonym", "evidence": [ { "id": "F1SU01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU01/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin carboxyl-terminal hydrolase 48 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020953359", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953359" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "USP48", "url": "https://www.uniprot.org/uniprotkb/F1SU01", "locus": { "chromosome": "6", "start_pos": 79744932, "end_pos": 79810220, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024197", "url": "https://www.ensembl.org/id/ENSSSCG00000024197" } ] } } ], "crossref": [ { "id": "F1SU01", "url": "https://alphafold.ebi.ac.uk/entry/F1SU01", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024197", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024197", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01795", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01795", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02668", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02668", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100625904", "url": "https://www.ncbi.nlm.nih.gov/gene/100625904", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035927", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035927", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100625904", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625904", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SU01", "url": "https://www.orthodb.org/?gene=F1SU01", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24006:SF722", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006:SF722", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06337", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06337", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020953359", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020953359", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R1A6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1A6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1A6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU01-1", "url": "https://www.uniprot.org/uniprotkb/F1SU01-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPRLQLEKAAWRWAETVRPEEVSQEHIETAYRIWLEPCIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMMGDGVQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQQQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHKGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTIQVPAFLQELVDRDNSKFEEWCIEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNHACLCSHDKLHPDKISIMKRISEYAADIFYSRYGGGPRLTVKALCKECVVERCRVLRLKNQLNEDYKTVNNLLKATVKGSDGFWVGKSSLRSWRQLALEQLDEQDAEADQSNGKMNGNTLNKDESKEERKEEEEELNFNEDILCPHGELCISENERRLVSKEAWSKLQQYFPKAPEFPSFKECCSQCKILEREGEENEALHKMIANEQKTSLPNLFQDKNRPCLSNWPEDTDVLYIVSQFFVEEWRKFVRKPTRCSPVSSVGNSALLCPHGGLMFTFASMTKEDSKLIALIWPSEWQMIQKLFVVDHVIKITRTEVGDTDPPETQYISEPKLCPECREGLLCQQQRDLREYTQATIYVHKVVDNKKVMKDSAPELNVSSSETEEDKEEAKPDGEKDPDFNQSNGGTKRQKISHQNYIAYQKQVIRRSMRHRKVRGEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPIADYAAMDDVMQVCMPEEGFKGTGLLGH", "length": 1036, "header": "tr|F1SU01-1|F1SU01_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase 48 OS=Sus scrofa OX=9823 GN=USP48 PE=3 SV=4 CANONICAL=F1SU01-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R1A6-1", "url": "https://www.uniprot.org/uniprotkb/F1SU01/entry#A0A5G2R1A6-1", "sequence": { "sequence": "MAPRLQLEKAAWRWAETVRPEEVSQEHIETAYRIWLEPCIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMMGDGVQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQQQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHKGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTIQVPAFLQELVDRDNSKFEEWCIEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNHACLCSHDKLHPDKISIMKRISEYAADIFYSRYGGGPRLTVKALCKECVVERCRVLRLKNQLNEDYKTVNNLLKATVKGSDGFWVGKSSLRSWRQLALEQLDEQDAEADQSNGKMNGNTLNKDESKEERKEEEEELNFNEDILCPHGELCISENERRLVSKEAWSKLQQYFPKAPEFPSFKECCSQCKILEREGEENEALHKMIANEQKTSLPNLFQDKNRPCLSNWPEDTDVLYIVSQFFVEEWRKFVRKPTRCSPVSSVGNSALLCPHGGLMFTFASMTKEDSKLIALIWPSEWQMIQKLFVVDHVIKITRTEVGDTDPPETQYISEPKLCPECREGLLCQQQRDLREYTQATIYVHKVVDNKKVMKDSAPELNVSSSETEEDKEEAKPDGEKDPDFNQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPIADYAAMDDVMQVCMPEEGFKGTGLLGH", "length": 984, "header": "tr|A0A5G2R1A6-1|F1SU01_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase 48 OS=Sus scrofa OX=9823 GN=USP48 PE=3 SV=1 CANONICAL=F1SU01-1" }, "locus": { "chromosome": "6", "start_pos": 79810013, "end_pos": 79745454, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089073.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089073.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070956.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070956.1" } ] } }, { "isoform_ac": "F1SU01-1", "url": "https://www.uniprot.org/uniprotkb/F1SU01/entry#F1SU01-1", "sequence": { "sequence": "MAPRLQLEKAAWRWAETVRPEEVSQEHIETAYRIWLEPCIRGVCRRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYMMGDGVQEEKDYEPQTICEHLQYLFALLQNSNRRYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQQQFCGEYAYVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHKGGSYVYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTIQVPAFLQELVDRDNSKFEEWCIEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNHACLCSHDKLHPDKISIMKRISEYAADIFYSRYGGGPRLTVKALCKECVVERCRVLRLKNQLNEDYKTVNNLLKATVKGSDGFWVGKSSLRSWRQLALEQLDEQDAEADQSNGKMNGNTLNKDESKEERKEEEEELNFNEDILCPHGELCISENERRLVSKEAWSKLQQYFPKAPEFPSFKECCSQCKILEREGEENEALHKMIANEQKTSLPNLFQDKNRPCLSNWPEDTDVLYIVSQFFVEEWRKFVRKPTRCSPVSSVGNSALLCPHGGLMFTFASMTKEDSKLIALIWPSEWQMIQKLFVVDHVIKITRTEVGDTDPPETQYISEPKLCPECREGLLCQQQRDLREYTQATIYVHKVVDNKKVMKDSAPELNVSSSETEEDKEEAKPDGEKDPDFNQSNGGTKRQKISHQNYIAYQKQVIRRSMRHRKVRGEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEPIADYAAMDDVMQVCMPEEGFKGTGLLGH", "length": 1036, "header": "tr|F1SU01-1|F1SU01_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase 48 OS=Sus scrofa OX=9823 GN=USP48 PE=3 SV=4 CANONICAL=F1SU01-1" }, "locus": { "chromosome": "6", "start_pos": 79810013, "end_pos": 79745454, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003906.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003906.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003816.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003816.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 221, "start_aa": "Thr", "end_pos": 221, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr221", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1A6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1A6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100625904", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100625904", "resource": "KEGG Pathway" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" }, { "name": "protein deubiquitination", "id": "GO:0016579", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016579", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" }, { "name": "regulation of protein stability", "id": "GO:0031647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031647", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cysteine-type endopeptidase activity", "id": "GO:0004197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004197", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" }, { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F1SU01", "url": "https://www.uniprot.org/uniprotkb/F1SU01" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 427, "end_pos": 429, "annotation": "n_glycosylation_sequon" }, { "start_pos": 885, "end_pos": 887, "annotation": "n_glycosylation_sequon" }, { "start_pos": 909, "end_pos": 911, "annotation": "n_glycosylation_sequon" }, { "start_pos": 953, "end_pos": 955, "annotation": "n_glycosylation_sequon" }, { "start_pos": 975, "end_pos": 977, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-8862184", "name": "USP48 cleaves polyubiquitin", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8862184", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8862184" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SU01-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1036, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SU01-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SU01" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SU01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU01" }, { "id": "PS51283", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51283" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DUSP", "eco_id": "ECO_0000259", "start_pos": 460, "end_pos": 554, "start_aa": "Gln", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SU01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU01" }, { "id": "PS50235", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50235" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "USP", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 421, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SU01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU01" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 930, "end_pos": 1003, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 221 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 278, "end_pos": 280 }, { "start_pos": 427, "end_pos": 429 }, { "start_pos": 885, "end_pos": 887 }, { "start_pos": 909, "end_pos": 911 }, { "start_pos": 953, "end_pos": 955 }, { "start_pos": 975, "end_pos": 977 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5C1-1", "uniprot_ac": "F2Z5C1", "uniprot_id": "F2Z5C1_PIG", "mass": { "chemical_mass": 36134.0, "monoisotopic_mass": 36134.0 }, "refseq": { "ac": "XP_003129266", "name": "annexin A5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129266" }, "gene_names": [ { "name": "ANXA5", "type": "recommended", "evidence": [ { "id": "F2Z5C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ] }, { "name": "ANXA5", "type": "synonym", "evidence": [ { "id": "XP_003129266", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129266" } ] } ], "protein_names": [ { "name": "Annexin", "type": "recommended", "evidence": [ { "id": "F2Z5C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1/entry#names_and_taxonomy" } ] }, { "name": "annexin A5", "type": "synonym", "evidence": [ { "id": "XP_003129266", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129266" } ] } ], "function": [ { "annotation": "This protein is an anticoagulant protein that acts as an indirect inhibitor of the thromboplastin-specific complex, which is involved in the blood coagulation cascade.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3B5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3B5#function" }, { "database": "UniProtKB", "id": "ARBA00002758", "url": "https://www.uniprot.org/uniprotkb/ARBA00002758#function" }, { "database": "UniProtKB", "id": "A0A4X1V5M9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5M9#function" }, { "database": "UniProtKB", "id": "A0A4X1VA11", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA11#function" }, { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANXA5", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1", "locus": { "chromosome": "8", "start_pos": 102425750, "end_pos": 102388103, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009097", "url": "https://www.ensembl.org/id/ENSSSCG00000009097" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009097", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009097", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521982", "url": "https://www.ncbi.nlm.nih.gov/gene/100521982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001464", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001464", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018252", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018252", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037104", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037104", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521982", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521982", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LQGNRDP", "url": "https://omabrowser.org/oma/group/LQGNRDP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5C1", "url": "https://www.orthodb.org/?gene=F2Z5C1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10502", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10502", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10502:SF26", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10502:SF26", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003129266", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129266", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1V5M9", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1V5M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1V5M9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA11", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VA11-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VA11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3B5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3B5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R3B5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3B5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5C1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQVLRGTVTDFPGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEIAVAFKTLFGRDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKILTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDGRIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD", "length": 321, "header": "tr|F2Z5C1-1|F2Z5C1_PIG Isoform 1 of Annexin OS=Sus scrofa OX=9823 GN=ANXA5 PE=1 SV=4 CANONICAL=F2Z5C1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1V5M9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1/entry#A0A4X1V5M9-1", "sequence": { "sequence": "MAQVLRGTVTDFPGFDERADAETLRKAMKGLEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDGRIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD", "length": 221, "header": "tr|A0A4X1V5M9-1|F2Z5C1_PIG Computationally mapped isoform of Annexin OS=Sus scrofa OX=9823 GN=ANXA5 PE=1 SV=1 CANONICAL=F2Z5C1-1" }, "locus": { "chromosome": "8", "start_pos": 102420400, "end_pos": 102388446, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063143.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063143.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038901.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038901.2" } ] } }, { "isoform_ac": "A0A4X1VA11-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1/entry#A0A4X1VA11-1", "sequence": { "sequence": "MAQDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKILTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDGRIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD", "length": 261, "header": "tr|A0A4X1VA11-1|F2Z5C1_PIG Computationally mapped isoform of Annexin OS=Sus scrofa OX=9823 GN=ANXA5 PE=1 SV=1 CANONICAL=F2Z5C1-1" }, "locus": { "chromosome": "8", "start_pos": 102420400, "end_pos": 102388446, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102961.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102961.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079855.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079855.1" } ] } }, { "isoform_ac": "A0A5G2R3B5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1/entry#A0A5G2R3B5-1", "sequence": { "sequence": "MDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKILTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDGRIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD", "length": 259, "header": "tr|A0A5G2R3B5-1|F2Z5C1_PIG Computationally mapped isoform of Annexin OS=Sus scrofa OX=9823 GN=ANXA5 PE=1 SV=2 CANONICAL=F2Z5C1-1" }, "locus": { "chromosome": "8", "start_pos": 102420400, "end_pos": 102403915, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084532.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084532.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071683.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071683.2" } ] } }, { "isoform_ac": "F2Z5C1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1/entry#F2Z5C1-1", "sequence": { "sequence": "MAQVLRGTVTDFPGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEIAVAFKTLFGRDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKILTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDGRIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD", "length": 321, "header": "tr|F2Z5C1-1|F2Z5C1_PIG Isoform 1 of Annexin OS=Sus scrofa OX=9823 GN=ANXA5 PE=1 SV=4 CANONICAL=F2Z5C1-1" }, "locus": { "chromosome": "8", "start_pos": 102420400, "end_pos": 102388446, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009963.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009963.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009706.4", "url": "https://www.ensembl.org/id/ENSSSCP00000009706.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R3B5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R3B5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521982", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521982", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MU33-1", "protein_name": "Annexin", "gene_name": "ANXA5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAQVLRGTVADFPGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEIAVAFKTLFGRDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIEQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDARIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVVVSRSEIDLYNIRKEFRKNFGTSLYSMIKGDTSGDYKKALLLLCGGEDD", "length": 321 }, "evidence": [ { "id": "F2Z5C1", "url": "https://omabrowser.org/oma/group/F2Z5C1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P08758-1", "protein_name": "Annexin A5", "gene_name": "ANXA5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVLRGTVTDFPGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLLDDLKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANRDPDAGIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRKVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGEDD", "length": 320 }, "evidence": [ { "id": "F2Z5C1", "url": "https://omabrowser.org/oma/group/F2Z5C1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P14668-1", "protein_name": "Annexin A5", "gene_name": "Anxa5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRGTVTDFSGFDGRADAEVLRKAMKGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGRDLVNDMKSELTGKFEKLIVALMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELRAIKQAYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDPDTAIDDAQVELDAQALFQAGELKWGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLENLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVIVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD", "length": 319 }, "evidence": [ { "id": "F2Z5C1", "url": "https://omabrowser.org/oma/group/F2Z5C1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P17153-1", "protein_name": "Annexin A5", "gene_name": "ANXA5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAKYTRGTVTAFSPFDARADAEALRKAMKGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHALKHAIKGAGTNEKVLTEILASRTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGELKWGTDEETFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKCIRSVPAYFAETLYYSMKGAGTDDDTLIRVMVSRSEIDLLDIRHEFRKNFAKSLYQMIQKDTSGDYRKALLLLCGGDDE", "length": 321 }, "evidence": [ { "id": "F2Z5C1", "url": "https://omabrowser.org/oma/group/F2Z5C1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P48036-1", "protein_name": "Annexin A5", "gene_name": "Anxa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATRGTVTDFPGFDGRADAEVLRKAMKGLGTDEDSILNLLTSRSNAQRQEIAQEFKTLFGRDLVDDLKSELTGKFEKLIVAMMKPSRLYDAYELKHALKGAGTDEKVLTEIIASRTPEELSAIKQVYEEEYGSNLEDDVVGDTSGYYQRMLVVLLQANRDPDTAIDDAQVELDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLEQLLLAVVKSIRSIPAYLAETLYYAMKGAGTDDHTLIRVVVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGGEDD", "length": 319 }, "evidence": [ { "id": "F2Z5C1", "url": "https://omabrowser.org/oma/group/F2Z5C1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "pmid": "" }, { "name": "phosphatidylserine binding", "id": "GO:0001786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001786", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of coagulation", "id": "GO:0050819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050819", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "pmid": "" }, { "name": "sarcolemma", "id": "GO:0042383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042383", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "pmid": "" }, { "name": "vesicle membrane", "id": "GO:0012506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012506", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "pmid": "" }, { "name": "endothelial microparticle", "id": "GO:0072563", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072563", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z567-1", "uniprot_ac": "F2Z567", "uniprot_id": "F2Z567_PIG", "mass": { "chemical_mass": 28025.0, "monoisotopic_mass": 28025.0 }, "refseq": { "ac": "XP_005655354", "name": "60S ribosomal protein L8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655354" }, "gene_names": [ { "name": "RPL8", "type": "recommended", "evidence": [ { "id": "F2Z567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ] }, { "name": "RPL8", "type": "synonym", "evidence": [ { "id": "XP_005655354", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655354" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein uL2", "type": "recommended", "evidence": [ { "id": "F2Z567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z567/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L8", "type": "synonym", "evidence": [ { "id": "XP_005655354", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655354" }, { "id": "F2Z567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z567/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell.", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567#function" }, { "database": "UniProtKB", "id": "ARBA00034092", "url": "https://www.uniprot.org/uniprotkb/ARBA00034092#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPL8", "url": "https://www.uniprot.org/uniprotkb/F2Z567", "locus": { "chromosome": "4", "start_pos": 136107, "end_pos": 138652, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029830", "url": "https://www.ensembl.org/id/ENSSSCG00000029830" } ] } } ], "crossref": [ { "id": "ENSSSCG00000029830", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029830", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154456", "url": "https://www.ncbi.nlm.nih.gov/gene/100154456", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "3J7O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "3J7P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR002171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008991", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008991", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014726", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014726", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022669", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022669", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023672", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023672", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154456", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154456", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GGRHPCT", "url": "https://omabrowser.org/oma/group/GGRHPCT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z567", "url": "https://www.orthodb.org/?gene=F2Z567", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13691", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13691", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13691:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13691:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00003j7o", "url": "https://www.rcsb.org/structure/pdb_00003j7o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00003j7p", "url": "https://www.rcsb.org/structure/pdb_00003j7p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7O", "url": "https://www.rcsb.org/structure/3J7O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7P", "url": "https://www.rcsb.org/structure/3J7P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF00181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03947", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03947", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9629569", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629569", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005655354", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655354", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R4W2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4W2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4W2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4W2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1VDT5", "url": "https://www.uniprot.org/uniprotkb/A0A5K1VDT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1VDT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1VDT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z567-1", "url": "https://www.uniprot.org/uniprotkb/F2Z567-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GNY4", "url": "https://www.uniprot.org/uniprotkb/K7GNY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GNY4-1", "url": "https://www.uniprot.org/uniprotkb/K7GNY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 257, "header": "tr|F2Z567-1|F2Z567_PIG Isoform 1 of Large ribosomal subunit protein uL2 OS=Sus scrofa OX=9823 GN=RPL8 PE=1 SV=1 CANONICAL=F2Z567-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R4W2-1", "url": "https://www.uniprot.org/uniprotkb/F2Z567/entry#A0A5G2R4W2-1", "sequence": { "sequence": "MEGGGQGARALEPGWRGCLGRLGADREPPLDRHHGPRDPWAEEGRRLRVPRAREAPKRRRPSARGGLRRATRLHQGHREGATCGLRRVGARRELGNPPRPCSCLHNLQDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 319, "header": "tr|A0A5G2R4W2-1|F2Z567_PIG Computationally mapped isoform of Large ribosomal subunit protein uL2 OS=Sus scrofa OX=9823 GN=RPL8 PE=1 SV=1 CANONICAL=F2Z567-1" }, "locus": { "chromosome": "4", "start_pos": 138434, "end_pos": 136148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077316.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077316.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069230.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069230.1" } ] } }, { "isoform_ac": "A0A5K1VDT5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z567/entry#A0A5K1VDT5-1", "sequence": { "sequence": "MEGGGQGARALEPGWRGCLGRLGADREPPLDRHHGPRDPWAEEGRRLRVPRAREAPKRRRPSARGGLRRATRLHQGHREGATCGLRRVGARRELGNPPRPCSCLHNLQDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKGKSRLPVGAAQGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 314, "header": "tr|A0A5K1VDT5-1|F2Z567_PIG Computationally mapped isoform of Large ribosomal subunit protein uL2 OS=Sus scrofa OX=9823 GN=RPL8 PE=1 SV=2 CANONICAL=F2Z567-1" }, "locus": { "chromosome": "4", "start_pos": 138434, "end_pos": 136148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035195.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035195.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029484.4", "url": "https://www.ensembl.org/id/ENSSSCP00000029484.4" } ] } }, { "isoform_ac": "F2Z567-1", "url": "https://www.uniprot.org/uniprotkb/F2Z567/entry#F2Z567-1", "sequence": { "sequence": "MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 257, "header": "tr|F2Z567-1|F2Z567_PIG Isoform 1 of Large ribosomal subunit protein uL2 OS=Sus scrofa OX=9823 GN=RPL8 PE=1 SV=1 CANONICAL=F2Z567-1" }, "locus": { "chromosome": "4", "start_pos": 138334, "end_pos": 136148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031015.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031015.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020790.1", "url": "https://www.ensembl.org/id/ENSSSCP00000020790.1" } ] } }, { "isoform_ac": "K7GNY4-1", "url": "https://www.uniprot.org/uniprotkb/F2Z567/entry#K7GNY4-1", "sequence": { "sequence": "MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 225, "header": "tr|K7GNY4-1|F2Z567_PIG Computationally mapped isoform of Large ribosomal subunit protein uL2 OS=Sus scrofa OX=9823 GN=RPL8 PE=1 SV=3 CANONICAL=F2Z567-1" }, "locus": { "chromosome": "4", "start_pos": 138334, "end_pos": 136148, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035638.3", "url": "https://www.ensembl.org/id/ENSSSCT00000035638.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029591.3", "url": "https://www.ensembl.org/id/ENSSSCP00000029591.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structure of the mammalian ribosome-Sec61 complex to 3.4 A resolution.", "journal": "Cell", "date": "2014", "authors": "Voorhees Rebecca M, Fern\u00e1ndez Israel S, Scheres Sjors H W, Hegde Ramanujan S", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "reference": [ { "type": "PubMed", "id": "24930395", "url": "https://glygen.org/publication/PubMed/24930395" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154456", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154456", "resource": "KEGG Pathway" }, { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-9629569", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629569", "resource": "Reactome", "description": "Protein hydroxylation" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NIX0-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGRVIRGQRKGAGSVFRAHVKHRKGPAKLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKIAFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGIVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 257 }, "evidence": [ { "id": "F2Z567", "url": "https://omabrowser.org/oma/group/F2Z567/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P13023-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "rpl8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGRIIRAQRKGKAGSVFGAHTHHRKGTPRFRALDYAERQGYVKGVVKEIIHDPGRGAPLARVVFKGLTQFKLDKQLFIAPEGMHTGQFVFAGKKATLTIGNILPIGKLPEGTIICNVEEKLGDCGAVARCSGNYATIVSHNPDEGVTRIKLPSGSKKNVSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWPKVRGVAMNPVEHPHGGGNHQHVGHATTTKRDDPAGKKVGLIAARRTGRLRGTKNISE", "length": 255 }, "evidence": [ { "id": "F2Z567", "url": "https://omabrowser.org/oma/group/F2Z567/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P62917-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 257 }, "evidence": [ { "id": "F2Z567", "url": "https://omabrowser.org/oma/group/F2Z567/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P62918-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "Rpl8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 257 }, "evidence": [ { "id": "F2Z567", "url": "https://omabrowser.org/oma/group/F2Z567/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3T0S6-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RPL8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQEKEN", "length": 257 }, "evidence": [ { "id": "F2Z567", "url": "https://omabrowser.org/oma/group/F2Z567/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q42064-1", "protein_name": "Large ribosomal subunit protein uL2x", "gene_name": "RPL8C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLARVAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAARRTGRLRGQAAALASKAD", "length": 258 }, "evidence": [ { "id": "F2Z567", "url": "https://omabrowser.org/oma/group/F2Z567/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q6P0V6-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "rpl8", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGRVIRGQRKGAGSVFKAHVKHRKGAAKLRHIDFAERHGYIKGIVKDIIHDPGRGAPLAKVMFRDPYRFKKRTELFIAAEGIHTGQFIYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKSRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTGRLRGTKTVQDKEN", "length": 257 }, "evidence": [ { "id": "F2Z567", "url": "https://omabrowser.org/oma/group/F2Z567/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9V3G1-1", "protein_name": "Large ribosomal subunit protein uL2", "gene_name": "RpL8", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGRVIRAQRKGAGSVFKAHVKKRKGAAKLRSLDFAERSGYIRGVVKDIIHDPGRGAPLAVVHFRDPYRYKIRKELFIAPEGMHTGQFVYCGRKATLQIGNVMPLSQMPEGTIICNLEEKTGDRGRLARTSGNYATVIAHNQDTKKTRVKLPSGAKKVVPSANRAMVGIVAGGGRIDKPILKAGRAYHKYKVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTGRIRGGKGDSKDK", "length": 256 }, "evidence": [ { "id": "F2Z567", "url": "https://omabrowser.org/oma/group/F2Z567/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" }, { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "organelle membrane", "id": "GO:0031090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031090", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" }, { "name": "large ribosomal subunit", "id": "GO:0015934", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015934", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" }, { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" }, { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F2Z567", "url": "https://www.uniprot.org/uniprotkb/F2Z567" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z567" }, { "id": "SM01382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein uL2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 231, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z567", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z567" }, { "id": "SM01383", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01383" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein uL2 RNA-binding", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 90, "start_aa": "Gly", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STS4-1", "uniprot_ac": "F1STS4", "uniprot_id": "F1STS4_PIG", "mass": { "chemical_mass": 67300.0, "monoisotopic_mass": 67300.0 }, "refseq": {}, "gene_names": [ { "name": "FZD4", "type": "recommended", "evidence": [ { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ] }, { "name": "ME3", "type": "recommended", "evidence": [ { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ] }, { "name": "ME3", "type": "synonym", "evidence": [ { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ] } ], "protein_names": [ { "name": "Malic enzyme", "type": "recommended", "evidence": [ { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ME3", "url": "https://www.uniprot.org/uniprotkb/F1STS4", "locus": { "chromosome": "9", "start_pos": 20294908, "end_pos": 20583584, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014919", "url": "https://www.ensembl.org/id/ENSSSCG00000014919" } ] } } ], "crossref": [ { "id": "F1STS4", "url": "https://alphafold.ebi.ac.uk/entry/F1STS4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014919", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014919", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000014920", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014920", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05312", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05312", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046346", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046346", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EVPVTPW", "url": "https://omabrowser.org/oma/group/EVPVTPW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23406", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23406", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23406:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23406:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00390", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00390", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03949", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03949", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70268", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70268", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q7Q0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q7Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAT9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RAT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAT9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKT1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STS4-1", "url": "https://www.uniprot.org/uniprotkb/F1STS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGASLGSGARVALLPRQACGAVRRWAPPAPARGCHSKTGLPRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEVSSLEEVVRLVKPTPSVGVAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGRTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDYAYKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYTWPKEAMNVQNV", "length": 604, "header": "tr|F1STS4-1|F1STS4_PIG Isoform 1 of Malic enzyme OS=Sus scrofa OX=9823 GN=ME3 PE=1 SV=3 CANONICAL=F1STS4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q7Q0-1", "url": "https://www.uniprot.org/uniprotkb/F1STS4/entry#A0A5G2Q7Q0-1", "sequence": { "sequence": "MGASLGSGARVALLPRQACGAVRRWAPPAPARGCHSKTGLPRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQDGPERSQLVIQ", "length": 317, "header": "tr|A0A5G2Q7Q0-1|F1STS4_PIG Computationally mapped isoform of Malic enzyme OS=Sus scrofa OX=9823 GN=ME3 PE=1 SV=2 CANONICAL=F1STS4-1" }, "locus": { "chromosome": "9", "start_pos": 20488638, "end_pos": 20317787, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081843.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081843.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059855.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059855.2" } ] } }, { "isoform_ac": "A0A5G2RAT9-1", "url": "https://www.uniprot.org/uniprotkb/F1STS4/entry#A0A5G2RAT9-1", "sequence": { "sequence": "MGASLGSGARVALLPRQACGAVRRWAPPAPARGCHSKTGLPRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEVSSLEEVVRLVKPAIIGVAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGRTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDYAYKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYTWPKEAMNVQNV", "length": 603, "header": "tr|A0A5G2RAT9-1|F1STS4_PIG Computationally mapped isoform of Malic enzyme OS=Sus scrofa OX=9823 GN=ME3 PE=1 SV=1 CANONICAL=F1STS4-1" }, "locus": { "chromosome": "9", "start_pos": 20488638, "end_pos": 20296586, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077651.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077651.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071255.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071255.1" } ] } }, { "isoform_ac": "A0A8W4FKT1-1", "url": "https://www.uniprot.org/uniprotkb/F1STS4/entry#A0A8W4FKT1-1", "sequence": { "sequence": "MGASLGSGARVALLPRQACGAVRRWAPPAPARGCHSKTGLPRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGGPERSQLVIQ", "length": 317, "header": "tr|A0A8W4FKT1-1|F1STS4_PIG Computationally mapped isoform of Malic enzyme OS=Sus scrofa OX=9823 GN=ME3 PE=1 SV=1 CANONICAL=F1STS4-1" }, "locus": { "chromosome": "9", "start_pos": 20488638, "end_pos": 20317787, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095174.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095174.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079517.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079517.1" } ] } }, { "isoform_ac": "F1STS4-1", "url": "https://www.uniprot.org/uniprotkb/F1STS4/entry#F1STS4-1", "sequence": { "sequence": "MGASLGSGARVALLPRQACGAVRRWAPPAPARGCHSKTGLPRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLPTMLNSWPEDDIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPRQCLPVLLDVGTNNEELLRDPLYIGLKHRRVRGQDYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKAEATRKIWMVDSRGLIVKGRSHLNHEKEMFAQDHPEVSSLEEVVRLVKPTPSVGVAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGRTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDYAYKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYTWPKEAMNVQNV", "length": 604, "header": "tr|F1STS4-1|F1STS4_PIG Isoform 1 of Malic enzyme OS=Sus scrofa OX=9823 GN=ME3 PE=1 SV=3 CANONICAL=F1STS4-1" }, "locus": { "chromosome": "9", "start_pos": 20488638, "end_pos": 20296586, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016275.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016275.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015839.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015839.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 409, "start_aa": "Thr", "end_pos": 409, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr409", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FKT1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-70268", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70268", "resource": "Reactome", "description": "Pyruvate metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K4C6-1", "protein_name": "Malic enzyme", "gene_name": "Me3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAALGTGARLTSLPRLACGSLRRQALSAPAQGCHSKSGPPRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYENQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHIATMLNSWPEDNIKLFLQLPTQSSECEEHCLSVIWPLRILAHMPERTSHLQLMNPLASSQTSCFIPYNAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGKEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNRLSNHVFVFQGAGEAAMGIAHLLVMALEKEGIPKTEAVRKIWMVDSKGLIVKGRSHLNHEKEMFAQEHPEVNSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYQVTEGRGIFASGSPFKSVTLEDGRTFIPGQGNNAYVFPGVALGIIAGGIRHVPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAVKVLDYAYKHNLASYYPEPKDKEAFIKSLIYTPDYDSFSLDTYTWPKEAMSVQKV", "length": 658 }, "evidence": [ { "id": "F1STS4", "url": "https://omabrowser.org/oma/group/F1STS4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q16798-1", "protein_name": "NADP-dependent malic enzyme, mitochondrial", "gene_name": "ME3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGAALGTGTRLAPWPGRACGALPRWTPTAPAQGCHSKPGPARPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYERQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHLATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVHGKAYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNKLSNHVFVFQGAGEAAMGIAHLLVMALEKEGVPKAEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGKTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDYAYKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYTWPKEAMNVQTV", "length": 604 }, "evidence": [ { "id": "F1STS4", "url": "https://omabrowser.org/oma/group/F1STS4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8BMF3-1", "protein_name": "NADP-dependent malic enzyme, mitochondrial", "gene_name": "Me3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGAALGTGARLTSVPRIACSSLRRQAPSAPAQGCHSKSGPPRPVPLKKRGYDVTRNPHLNKGMAFTLEERLQLGIHGLIPPCFLSQDVQLLRIMRYYENQQSDLDKYIILMTLQDRNEKLFYRVLTSDVEKFMPIVYTPTVGLACQHYGLTFRRPRGLFITIHDKGHIATMLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPVLLDVGTNNEELLRDPLYIGLKHQRVRGEEYDDLLDEFMQAVTDKFGINCLIQFEDFANANAFRLLNKYRNKYCMFNDDIQGTASVAVAGILAALRITKNRLSNHVFVFQGAGEAAMGIAHLLVMALEKEGIPKTEAIKKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMASFHERPIVFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGRTFTPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAVKVLDYAYKHNLASYYPEPKDKEAFVKSLIYTPDYDSFSLDTYSWPKEAMSVQKV", "length": 604 }, "evidence": [ { "id": "F1STS4", "url": "https://omabrowser.org/oma/group/F1STS4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" }, { "name": "NAD binding", "id": "GO:0051287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051287", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" }, { "name": "malate dehydrogenase (decarboxylating) (NADP+) activity", "id": "GO:0004473", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004473", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor", "id": "GO:0016616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016616", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" }, { "name": "malic enzyme activity", "id": "GO:0004470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004470", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" }, { "name": "NADP+ binding", "id": "GO:0070401", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070401", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "pyruvate biosynthetic process", "id": "GO:0042866", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042866", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" }, { "name": "malate metabolic process", "id": "GO:0006108", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006108", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1STS4", "url": "https://www.uniprot.org/uniprotkb/F1STS4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STS4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 604, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STS4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STS4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4" }, { "id": "SM01274", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01274" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Malic enzyme N-terminal", "eco_id": "ECO_0000259", "start_pos": 114, "end_pos": 295, "start_aa": "Gln", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4" }, { "id": "SM00919", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00919" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Malic enzyme NAD-binding", "eco_id": "ECO_0000259", "start_pos": 305, "end_pos": 557, "start_aa": "Ile", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "A0A5G2Q7Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q0#function" }, { "id": "A0A5G2Q7Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q0" }, { "id": "PIRSR000106-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000106-3" }, { "id": "A0A5G2RAT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAT9#function" }, { "id": "A0A5G2RAT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAT9" }, { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4#function" }, { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4" }, { "id": "A0A8W4FKT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT1#function" }, { "id": "A0A8W4FKT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT1" } ], "binding_site_uniprot": 280, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_60240", "ligand": "divalent metal cation", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 280, "end_pos": 280, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2Q7Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q0#function" }, { "id": "A0A5G2Q7Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q0" }, { "id": "PIRSR000106-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000106-3" }, { "id": "A0A5G2RAT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAT9#function" }, { "id": "A0A5G2RAT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAT9" }, { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4#function" }, { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4" }, { "id": "A0A8W4FKT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT1#function" }, { "id": "A0A8W4FKT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT1" } ], "binding_site_uniprot": 281, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_60240", "ligand": "divalent metal cation", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 281, "end_pos": 281, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2Q7Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q0#function" }, { "id": "A0A5G2Q7Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q7Q0" }, { "id": "PIRSR000106-3", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR000106-3" }, { "id": "A0A5G2RAT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAT9#function" }, { "id": "A0A5G2RAT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RAT9" }, { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4#function" }, { "id": "F1STS4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STS4" }, { "id": "A0A8W4FKT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT1#function" }, { "id": "A0A8W4FKT1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKT1" } ], "binding_site_uniprot": 304, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_60240", "ligand": "divalent metal cation", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 304, "end_pos": 304, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 409 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STM4-1", "uniprot_ac": "F1STM4", "uniprot_id": "F1STM4_PIG", "mass": { "chemical_mass": 50236.0, "monoisotopic_mass": 50236.0 }, "refseq": { "ac": "XP_003129826", "name": "elongation factor 1-alpha, oocyte form-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129826" }, "gene_names": [ { "name": "LOC100514912", "type": "synonym", "evidence": [ { "id": "XP_003129826", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129826" } ] } ], "protein_names": [ { "name": "Elongation factor 1-alpha", "type": "recommended", "evidence": [ { "id": "F1STM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM4/entry#names_and_taxonomy" } ] }, { "name": "elongation factor 1-alpha, oocyte form-like", "type": "synonym", "evidence": [ { "id": "XP_003129826", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129826" } ] } ], "function": [ { "annotation": "GTP hydrolase that promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis. Participates in mitochondrial translation. Also plays a role in the regulation of autophagy and innate immunity. Recruits ATG5-ATG12 and NLRX1 at mitochondria and serves as a checkpoint of the RIGI-MAVS pathway. In turn, inhibits RLR-mediated type I interferon while promoting autophagy.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCL5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCL5#function" }, { "database": "UniProtKB", "id": "ARBA00094234", "url": "https://www.uniprot.org/uniprotkb/ARBA00094234#function" } ] }, { "annotation": "This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QCL5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCL5#function" }, { "database": "UniProtKB", "id": "RU000325", "url": "https://www.uniprot.org/uniprotkb/RU000325#function" }, { "database": "UniProtKB", "id": "A0A5G2RBZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBZ6#function" }, { "database": "UniProtKB", "id": "F1STM4", "url": "https://www.uniprot.org/uniprotkb/F1STM4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STM4", "url": "https://www.uniprot.org/uniprotkb/F1STM4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1STM4", "locus": {} } ], "crossref": [ { "id": "F1STM4", "url": "https://alphafold.ebi.ac.uk/entry/F1STM4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034113", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034113", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01883", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01883", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03693", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03693", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03705", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03705", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514912", "url": "https://www.ncbi.nlm.nih.gov/gene/100514912", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004539", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004539", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514912", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514912", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AIRDMGM", "url": "https://omabrowser.org/oma/group/AIRDMGM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STM4", "url": "https://www.orthodb.org/?gene=F1STM4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23115", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23115", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00009", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00009", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03143", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03143", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03144", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03144", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22594", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22594", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129826", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129826", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QCL5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCL5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCL5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STM4", "url": "https://www.uniprot.org/uniprotkb/F1STM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STM4-1", "url": "https://www.uniprot.org/uniprotkb/F1STM4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVAVNKMDSTEPAFSAARFQEITKEVSNYIKKIGYNPASVAFVPISGWHGDNMLEPSTNMPWFKGWKVERKEGNATGVTLLEALDSILPPTRPVNKPLRLPLQDVYKIGGIGTVPVGRVETGFLKAGMVVTFAPNNVTTEVKSVEMHHEALAEALPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEASSFVAQVIVLNHPGQIHAGYSPVLDCHTAHISCKFAELREKMDRRSGKKLEDNPKALKSGDAAMVQMVPSKAMCVETFSQYPPLGRFAVRDMRQTVAVGVIKAVEKKTATTAKVTKAAVKASKK", "length": 461, "header": "tr|F1STM4-1|F1STM4_PIG Isoform 1 of Elongation factor 1-alpha OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1STM4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QCL5-1", "url": "https://www.uniprot.org/uniprotkb/F1STM4/entry#A0A5G2QCL5-1", "sequence": { "sequence": "MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVAVNKMDSTEPAFSAARFQEITKEVSNYIKKIGYNPASVAFVPISGWHGDNMLEPSTNMPWFKGWKVERKEGNATGVTLLEALDSILPPTRPVNKPLRLPLQDVYKIGGIGTVPVGRVETGFLKAGMVVTFAPNNVTTEVKSVEMHHEALAEALPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEASSFVAQVIVLNHPGQIHAGYSPVLDCHTAHISCKFSGDAAMVQMVPSKAMCVETFSQYPPLGRFAVRDMRQTVAVGVIKAVEKKTATTAKVTKAAVKASKK", "length": 438, "header": "tr|A0A5G2QCL5-1|F1STM4_PIG Computationally mapped isoform of Elongation factor 1-alpha OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1STM4-1" }, "locus": { "chromosome": "9", "start_pos": 25503075, "end_pos": 25500473, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068105.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068105.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062321.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062321.1" } ] } }, { "isoform_ac": "A0A5G2RBZ6-1", "url": "https://www.uniprot.org/uniprotkb/F1STM4/entry#A0A5G2RBZ6-1", "sequence": { "sequence": "MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVAVNKMDSTEPAFSAARFQEITKEVSNYIKKIGYNPASVAFVPISGWHGDNMLEPSTNMPWFKGWKVERKEGNATGVTLLEALDSILPPTRPVNKPLRLPLQDVYKIGGIGTVPVGRVETGFLKAGMVVTFAPNNVTTEVKSVEMHHEALAEALPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEASSFVAQVIVLNHPGQIHAGYSPVLDCHTAHISCKFAELREKMDRRSGKKLEDNPKALKSGDAAMVQMVPSKAMCVETFSQYPPLAFLCPGL", "length": 428, "header": "tr|A0A5G2RBZ6-1|F1STM4_PIG Computationally mapped isoform of Elongation factor 1-alpha OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1STM4-1" }, "locus": { "chromosome": "9", "start_pos": 25503075, "end_pos": 25500054, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089939.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089939.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074543.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074543.1" } ] } }, { "isoform_ac": "F1STM4-1", "url": "https://www.uniprot.org/uniprotkb/F1STM4/entry#F1STM4-1", "sequence": { "sequence": "MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDISLWKFETSKYYITIIDAPGHRDFIKNMITGTSQADCAVLIVAAGVGEFEAGISKNGQTREHALLAFTLGVKQLIVAVNKMDSTEPAFSAARFQEITKEVSNYIKKIGYNPASVAFVPISGWHGDNMLEPSTNMPWFKGWKVERKEGNATGVTLLEALDSILPPTRPVNKPLRLPLQDVYKIGGIGTVPVGRVETGFLKAGMVVTFAPNNVTTEVKSVEMHHEALAEALPGDNVGFNVKNVSVKDIRRGNVAGDSKNDPPMEASSFVAQVIVLNHPGQIHAGYSPVLDCHTAHISCKFAELREKMDRRSGKKLEDNPKALKSGDAAMVQMVPSKAMCVETFSQYPPLGRFAVRDMRQTVAVGVIKAVEKKTATTAKVTKAAVKASKK", "length": 461, "header": "tr|F1STM4-1|F1STM4_PIG Isoform 1 of Elongation factor 1-alpha OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F1STM4-1" }, "locus": { "chromosome": "9", "start_pos": 25503075, "end_pos": 25500473, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016299.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016299.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015862.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015862.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RBZ6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBZ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514912", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514912", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P02994-1", "protein_name": "Elongation factor 1-alpha", "gene_name": "TEF1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTTEVKSVEMHHEQLEQGVPGDNVGFNVKNVSVKEIRRGNVCGDAKNDPPKGCASFNATVIVLNHPGQISAGYSPVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAVRDMRQTVAVGVIKSVDKTEKAAKVTKAAQKAAKK", "length": 458 }, "evidence": [ { "id": "F1STM4", "url": "https://omabrowser.org/oma/group/F1STM4/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P05303-1", "protein_name": "Elongation factor 1-alpha 2", "gene_name": "eEF1alpha2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGYNPASVAFVPISGWHGDNMLEPSEKMPWFKGWSVERKEGKAEGKCLIDALDAILPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGLLKPGMVVNFAPVNLVTEVKSVEMHHEALTEAMPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHPGQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAAIIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKETTSGKVTKAAEKAQKKK", "length": 462 }, "evidence": [ { "id": "F1STM4", "url": "https://omabrowser.org/oma/group/F1STM4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "P0CT31-1", "protein_name": "Elongation factor 1-alpha", "gene_name": "eef1a1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASEMGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEIVKEVSSFIKKIGYNPEKVAFVPISGWNGDNMLERSDKMEWYKGPTLLEALDAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK", "length": 453 }, "evidence": [ { "id": "F1STM4", "url": "https://omabrowser.org/oma/group/F1STM4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P0CT32-1", "protein_name": "Elongation factor 1-alpha", "gene_name": "eef1a2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKEKTHINIVVIGHVDAGKSTTTGHLIYKCGGIDKRVIEKYEKEASEMGKQSFKYAWVMDKLKAERERGITIDIALWKFETSKYYFTIIDAPGHRDFIKNMITGTSQADCAVLVIASPTGEFEAGIAKNGQTREHALLAYTLGVKQMIVAINKMDEKSTNYSQARYDEIVKEVSSFIKKIGYNPEKVAFVPISGWNGDNMLERSDKMEWYKGPTLLEALDAIVEPKRPHDKPLRIPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPAGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAAAPSKKK", "length": 453 }, "evidence": [ { "id": "F1STM4", "url": "https://omabrowser.org/oma/group/F1STM4/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1STM4", "url": "https://www.uniprot.org/uniprotkb/F1STM4" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1STM4", "url": "https://www.uniprot.org/uniprotkb/F1STM4" } ], "pmid": "" }, { "name": "translation elongation factor activity", "id": "GO:0003746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003746", "evidence": [ { "database": "UniProtKB", "id": "F1STM4", "url": "https://www.uniprot.org/uniprotkb/F1STM4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F1STM4", "url": "https://www.uniprot.org/uniprotkb/F1STM4" } ], "pmid": "" }, { "name": "translational elongation", "id": "GO:0006414", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006414", "evidence": [ { "database": "UniProtKB", "id": "F1STM4", "url": "https://www.uniprot.org/uniprotkb/F1STM4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 284, "end_pos": 286, "annotation": "n_glycosylation_sequon" }, { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STM4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 461, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STM4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STM4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM4" }, { "id": "PS51722", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51722" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tr-type G", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 242, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 222, "end_pos": 224 }, { "start_pos": 284, "end_pos": 286 }, { "start_pos": 314, "end_pos": 316 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV73-1", "uniprot_ac": "F1SV73", "uniprot_id": "F1SV73_PIG", "mass": { "chemical_mass": 30760.0, "monoisotopic_mass": 30760.0 }, "refseq": {}, "gene_names": [ { "name": "CFAP300", "type": "recommended", "evidence": [ { "id": "F1SV73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV73" } ] } ], "protein_names": [ { "name": "Cilia- and flagella-associated protein 300", "type": "recommended", "evidence": [ { "id": "F1SV73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV73/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. May play a role in outer and inner dynein arm assembly.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QP42", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP42#function" }, { "database": "UniProtKB", "id": "ARBA00002404", "url": "https://www.uniprot.org/uniprotkb/ARBA00002404#function" }, { "database": "UniProtKB", "id": "A0A5G2RCH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCH8#function" }, { "database": "UniProtKB", "id": "F1SV73", "url": "https://www.uniprot.org/uniprotkb/F1SV73#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV73", "url": "https://www.uniprot.org/uniprotkb/F1SV73" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFAP300", "url": "https://www.uniprot.org/uniprotkb/F1SV73", "locus": { "chromosome": "9", "start_pos": 32795297, "end_pos": 32765880, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014980", "url": "https://www.ensembl.org/id/ENSSSCG00000014980" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014980", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014980", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520444", "url": "https://www.ncbi.nlm.nih.gov/gene/100520444", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029416", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029416", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520444", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520444", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FYHCYGV", "url": "https://omabrowser.org/oma/group/FYHCYGV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV73", "url": "https://www.orthodb.org/?gene=F1SV73", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31078", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31078", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31078:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31078:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QP42", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QP42-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QP42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RCH8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCH8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV73", "url": "https://www.uniprot.org/uniprotkb/F1SV73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV73-1", "url": "https://www.uniprot.org/uniprotkb/F1SV73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGEPGDLGGYYFRFLPQKTFQSLSTPETTSRLRQWSMLGRIKVQAFGFDQTFQAYRKDDFVMAFFKDPNVIPNLKLLSDSSGQWITLGTEVKKIEAINVPCTQLSMSFFNRLYDEDIVRDNGHIVKCLDSFCDPFLISDELRKVLLVEDSEKYEVFSQPDREEFLFCLFKHLCLGGALCQFEDVLSPYLETTKLIYKDLVSVRKNPQTKKIQITSSVFKVTAYDSVGMCYPSTKSHEQTFSYFIVDPIMRHVHVLYHCYGVGEMP", "length": 267, "header": "tr|F1SV73-1|F1SV73_PIG Isoform 1 of Cilia- and flagella-associated protein 300 OS=Sus scrofa OX=9823 GN=CFAP300 PE=3 SV=1 CANONICAL=F1SV73-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QP42-1", "url": "https://www.uniprot.org/uniprotkb/F1SV73/entry#A0A5G2QP42-1", "sequence": { "sequence": "MAAGEPGDLGGYYFRFLPQKTFQSLSTPETTSRLRQWSMLGRIKVQAFGFDQTFQAYRKDDFVMAFFKDPNVIPNLKLLSDSSGQWITLGFASGRLRKI", "length": 99, "header": "tr|A0A5G2QP42-1|F1SV73_PIG Computationally mapped isoform of Cilia- and flagella-associated protein 300 OS=Sus scrofa OX=9823 GN=CFAP300 PE=3 SV=1 CANONICAL=F1SV73-1" }, "locus": { "chromosome": "9", "start_pos": 32786819, "end_pos": 32765936, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071547.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071547.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066663.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066663.1" } ] } }, { "isoform_ac": "A0A5G2RCH8-1", "url": "https://www.uniprot.org/uniprotkb/F1SV73/entry#A0A5G2RCH8-1", "sequence": { "sequence": "MAAGEPGDLGGYYFRFLPQKTFQSLSTPETTSRLRQWSMLGRIKVQAFGFDQTFQAYRKDDFVMAFFKDPNVIPNLKLLSDSSGQWITLGTEVKKIEAINVPCTQLSMSFFNRLYDEDIVRDNGHIVKCLDSFCDPFLISDELRKVLLVEDSEKYEVFSQPDREEFLFCLFKHLCLGGALCQFEDVLSPYLETTKLIYKDLVSVRKNPQTKKIQITSSVFKVTAYVSVRGILQPINLITCYL", "length": 242, "header": "tr|A0A5G2RCH8-1|F1SV73_PIG Computationally mapped isoform of Cilia- and flagella-associated protein 300 OS=Sus scrofa OX=9823 GN=CFAP300 PE=3 SV=1 CANONICAL=F1SV73-1" }, "locus": { "chromosome": "9", "start_pos": 32793821, "end_pos": 32765936, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078066.2", "url": "https://www.ensembl.org/id/ENSSSCT00000078066.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071957.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071957.1" } ] } }, { "isoform_ac": "F1SV73-1", "url": "https://www.uniprot.org/uniprotkb/F1SV73/entry#F1SV73-1", "sequence": { "sequence": "MAAGEPGDLGGYYFRFLPQKTFQSLSTPETTSRLRQWSMLGRIKVQAFGFDQTFQAYRKDDFVMAFFKDPNVIPNLKLLSDSSGQWITLGTEVKKIEAINVPCTQLSMSFFNRLYDEDIVRDNGHIVKCLDSFCDPFLISDELRKVLLVEDSEKYEVFSQPDREEFLFCLFKHLCLGGALCQFEDVLSPYLETTKLIYKDLVSVRKNPQTKKIQITSSVFKVTAYDSVGMCYPSTKSHEQTFSYFIVDPIMRHVHVLYHCYGVGEMP", "length": 267, "header": "tr|F1SV73-1|F1SV73_PIG Isoform 1 of Cilia- and flagella-associated protein 300 OS=Sus scrofa OX=9823 GN=CFAP300 PE=3 SV=1 CANONICAL=F1SV73-1" }, "locus": { "chromosome": "9", "start_pos": 32794883, "end_pos": 32765936, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016342.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016342.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015903.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015903.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RCH8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RCH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520444", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520444", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C9D5-1", "protein_name": "Cilia- and flagella-associated protein 300", "gene_name": "C11orf70", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAGERRGAAGFAFRPLPQKAFPCLQDRDIRERLLKWSMQGSIAAQAFSFDQQFKPYQKDEFVMAFFNDQNVISNLKLLSASGQWTTLGSKVTKIEATLVPCTQTSMSFFDRLYTEGVVRENGVIVKCYDEYYDDIPISDELRKVLLLEDSDHYDIFSESDRKEFLFCLFKHLCIGGTLCQFEDELGPYLETTKALYKDLVSVQKNPETKEISITSTVFRVSAYDGSGLCYPSRTAHAQTFSYLLLDPARRHVHALYHRFGGGAP", "length": 265 }, "evidence": [ { "id": "F1SV73", "url": "https://omabrowser.org/oma/group/F1SV73/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "I3ITQ2-1", "protein_name": "Cilia- and flagella-associated protein 300", "gene_name": "cfap300", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVTTTIGIMAEEKLSFEQTFNFNLLSTKSFNFQEDPKTSRLLMKWSMLGRITAQAFNFDQSFQPYRSNDFAWNFFQDPCVKHNLNVLDPTGSWTRLGDITHVNVEVVPCTKVSVDIFDPIYSNGILRPSGHIVKCYHEIYPDFDELRMLLLEADSEYHHIISPSDRQEFLFRLFKHMVLGGELCQYEDVIDPYIETVKIMYKDLVSVQKDTDTKEINVVTTVLKVSAYDHSGLCYPSATENKQTFAYLCIDPCKRHVYVLFHSFGIGDFSGN", "length": 272 }, "evidence": [ { "id": "F1SV73", "url": "https://omabrowser.org/oma/group/F1SV73/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2HJH8-1", "protein_name": "Cilia- and flagella-associated protein 300", "gene_name": "CFAP300", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAGEPGDLGVYSFRFLPQKTFQSLSTPQTTSRLRQWSMLGRIEAQAFGFDQTFQAYRKDDFVTAFFKDPNVIPNLKLLSESSGEWLTLGTEVKKIEAINVPCTQLSMSFFNRLYDEAIVRDNGYIVKCLDSFCDPFLISDELRKVLLVEDSEKYEVFSQPEREEFLFCLFKHLCLGGALCQYEDVINPYLETTKLIYKDLVSVRKNPQTKKIQITSSIFKVTAYDSVGVCYPSTKSHEQTFSYFIVDPIKRHVHVLYHCYGMGEVS", "length": 267 }, "evidence": [ { "id": "F1SV73", "url": "https://omabrowser.org/oma/group/F1SV73/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q68FQ4-1", "protein_name": "Cilia- and flagella-associated protein 300", "gene_name": "Cfap300", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATGEPRDRGGYYFRFLPQRTFSSLSAREITNRLRQWSMLGRIQAQAFGFDQTFQPYQKDDFVTAFFKDPNVIPHLQLLAESSGQWTTLGTEVKRIEAINVPCTQLSMSFFQRLYDENIVRESGHIVKCLDSFCDPFLISDELRKVLLMEDSEKYEVFSPVEREEFLFCLFKHLCLGGSLCQYEDVLKPYLETAKLIYKDLVSVRKHPRTKEIQITSSVFKVKAYDSLGVCYPSPKEHEQTFSYFVVDPIKRHVNVLYHCYGVGEMA", "length": 267 }, "evidence": [ { "id": "F1SV73", "url": "https://omabrowser.org/oma/group/F1SV73/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8CC70-1", "protein_name": "Cilia- and flagella-associated protein 300", "gene_name": "Cfap300", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAGEPRDGGGYYFRFLPHRTFSSLSAREITSRLRQWSMLGRIQAQAFSFDQTFQPYQKDDFVMAFFKDPNVIPNLQLLSDSSGQWTTLGSEVKKIEAINVPCTQLSMSFFQRLYDENIVRESGHIVKCLDSFCDPFLISDELRKVLLMEDSEKYEVFSPVEREEFLFCLFKHLCLGGSLCQYEDVLKPYLETAKLIYKDLVSVRKHPRTKEIQITSSVFKVKAYDSVGVCYPSPKEHEQTFSYFVVDPIKRHVNVLYHCYGVGHMA", "length": 267 }, "evidence": [ { "id": "F1SV73", "url": "https://omabrowser.org/oma/group/F1SV73/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BRQ4-1", "protein_name": "Cilia- and flagella-associated protein 300", "gene_name": "CFAP300", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGELGDLGGYYFRFLPQKTFQSLSSKEITSRLRQWSMLGRIKAQAFGFDQTFQSYRKDDFVMAFFKDPNVIPNLKLLSDSSGQWIILGTEVKKIEAINVPCTQLSMSFFHRLYDEDIVRDSGHIVKCLDSFCDPFLISDELRRVLLVEDSEKYEIFSQPDREEFLFCLFKHLCLGGALCQYEDVISPYLETTKLIYKDLVSVRKNPQTKKIQITSSVFKVSAYDSAGMCYPSAKNHEQTFSYFIVDPIRRHLHVLYHCYGVGDMS", "length": 267 }, "evidence": [ { "id": "F1SV73", "url": "https://omabrowser.org/oma/group/F1SV73/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "F1SV73", "url": "https://www.uniprot.org/uniprotkb/F1SV73" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQH5-1", "uniprot_ac": "F1SQH5", "uniprot_id": "F1SQH5_PIG", "mass": { "chemical_mass": 73990.0, "monoisotopic_mass": 73990.0 }, "refseq": { "ac": "XP_001925377", "name": "histidine decarboxylase isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925377" }, "gene_names": [ { "name": "HDC", "type": "recommended", "evidence": [ { "id": "F1SQH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ] }, { "name": "HDC", "type": "synonym", "evidence": [ { "id": "XP_001925377", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925377" } ] } ], "protein_names": [ { "name": "Histidine decarboxylase", "type": "recommended", "evidence": [ { "id": "F1SQH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQH5/entry#names_and_taxonomy" } ] }, { "name": "4.1.1.22", "type": "synonym", "evidence": [ { "id": "F1SQH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQH5/entry#names_and_taxonomy" } ] }, { "name": "histidine decarboxylase isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001925377", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925377" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HDC", "url": "https://www.uniprot.org/uniprotkb/F1SQH5", "locus": { "chromosome": "1", "start_pos": 121525252, "end_pos": 121505751, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004644", "url": "https://www.ensembl.org/id/ENSSSCG00000004644" } ] } } ], "crossref": [ { "id": "F1SQH5", "url": "https://alphafold.ebi.ac.uk/entry/F1SQH5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004644", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004644", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06450", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06450", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156724", "url": "https://www.ncbi.nlm.nih.gov/gene/100156724", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010977", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010977", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015424", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015424", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156724", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156724", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ERDPSHY", "url": "https://omabrowser.org/oma/group/ERDPSHY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQH5", "url": "https://www.orthodb.org/?gene=F1SQH5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11999", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11999", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11999:SF68", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11999:SF68", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00282", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00282", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-70921", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70921", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925377", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925377", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RDK8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDK8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQH5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQH5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMGPEEYRERGKEMVDYICQYLSTVRERRVTPDVRPGYLRGQLPERAPEEPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPVCTELEMNVMDWLAKMLGLPDHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKASEPGADESCLNARLIAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDRERGLVPVFVCATLGTTGVCAFDCLSELGPICASEGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPVYLRHANSGAATDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGIEMAKYFESLVRNDPFFEIPAKRHLGLVVFRLKGPNCLTESVLKEIAKAGHLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIHDAATLILSQHCTSQPSPRLGNLIPQTQGPRALAKEMSFPSVNGAEDDPAQARKIIRQPPSVGASLVRGGGSCHLEILQDPFDDCFSEEAPDVTKHKLSSFLFSYLSVQNKKKAVRSLSCNSVPVSAQKPLPTDGSVKNGGSSRVRIFSRFPEEMMVLKKSAFKKLIKFYSVPSFPECSSQCGFQLPCCPLQAMV", "length": 662, "header": "tr|F1SQH5-1|F1SQH5_PIG Isoform 1 of Histidine decarboxylase OS=Sus scrofa OX=9823 GN=HDC PE=3 SV=1 CANONICAL=F1SQH5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RDK8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQH5/entry#A0A5G2RDK8-1", "sequence": { "sequence": "MMGPEEYRERGKEMVDYICQYLSTVRERRVTPDVRPGYLRGQLPERAPEEPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPVCTELEMNVMDWLAKMLGLPDHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKASEPGADESCLNARLIAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDRERGLVPVFVCATLGTTGVCAFDCLSELGPICASEGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPVYLRHANSGAATDFMGIEMAKYFESLVRNDPFFEIPAKRHLGLVVFRLKGPNCLTESVLKEIAKAGHLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIHDAATLILSQHCTSQPSPRLGNLIPQTQGPRALAKEMSFPSVNGAEDDPAQARKIIRQPPSVGASLVRGGGSCHLEILQDPFDDCFSEEAPDVTKHKLSSFLFSYLSVQNKKKAVRSLSCNSVPVSAQKPLPTDGSVKNGGSSRVRIFSRFPEEMMVLKKSAFKKLIKFYSVPSFPECSSQCGFQLPCCPLQAMV", "length": 629, "header": "tr|A0A5G2RDK8-1|F1SQH5_PIG Computationally mapped isoform of Histidine decarboxylase OS=Sus scrofa OX=9823 GN=HDC PE=3 SV=1 CANONICAL=F1SQH5-1" }, "locus": { "chromosome": "1", "start_pos": 121524675, "end_pos": 121505806, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087961.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087961.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072485.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072485.1" } ] } }, { "isoform_ac": "F1SQH5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQH5/entry#F1SQH5-1", "sequence": { "sequence": "MMGPEEYRERGKEMVDYICQYLSTVRERRVTPDVRPGYLRGQLPERAPEEPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPVCTELEMNVMDWLAKMLGLPDHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKASEPGADESCLNARLIAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDRERGLVPVFVCATLGTTGVCAFDCLSELGPICASEGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPVYLRHANSGAATDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGIEMAKYFESLVRNDPFFEIPAKRHLGLVVFRLKGPNCLTESVLKEIAKAGHLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIHDAATLILSQHCTSQPSPRLGNLIPQTQGPRALAKEMSFPSVNGAEDDPAQARKIIRQPPSVGASLVRGGGSCHLEILQDPFDDCFSEEAPDVTKHKLSSFLFSYLSVQNKKKAVRSLSCNSVPVSAQKPLPTDGSVKNGGSSRVRIFSRFPEEMMVLKKSAFKKLIKFYSVPSFPECSSQCGFQLPCCPLQAMV", "length": 662, "header": "tr|F1SQH5-1|F1SQH5_PIG Isoform 1 of Histidine decarboxylase OS=Sus scrofa OX=9823 GN=HDC PE=3 SV=1 CANONICAL=F1SQH5-1" }, "locus": { "chromosome": "1", "start_pos": 121524675, "end_pos": 121505806, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005129.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005129.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005004.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005004.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RDK8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDK8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156724", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156724", "resource": "KEGG Pathway" }, { "id": "R-SSC-70921", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-70921", "resource": "Reactome", "description": "Histidine catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z172-1", "protein_name": "Histidine decarboxylase", "gene_name": "HDC", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQKGLCYNKREEWKEMVDYICQYLSNVRERRVTPDVQPGYMRAQLPDSAPMDPDSWDNIFGDIEKIIMPGVVHWQSPHMHAYFPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPDKFLHHHPDSVGGGVLQSTVSESTLVALLAARKNKILEMKLSEPDADESSLNSRLIAYASDQAHSSVEKAGLISLVKMKFLPVDENFSLRGETLKKAIAEDRKKGLVPIFVCATLGTTGVCAFDSLSELGPICGAEGLWLHIDAAYAGTAFLCPEFRLFLDGIEYADSFAFNPSKWMMVHFDCTGFWVKDKYKLHQTFSVNPVYLRHPNSGAAVDFMHWQIPLSRRFRSLKLWFVIRSFGVKKLQAHVRHGTETAKFFESLVRSDPLFEIPAKRHLGLVVFRLKGPNWLTEKLLKELSSSGRLFLIPATIHDKFIIRFTVTSQFTTREDILQDWNIIQRTAAQIISQHNELHCVSSGDEAKIPNMISEPSSSVISHASQLYLEGKYKIPSRKIVGQPKKLAASPSTCVISQQVQGQGDLDDCFPEDVQDVTKHKLTSFLFSYLSVQGKKKTARSLSCNSVPMTDLLEQCNPKTTDSDQKEPHANGRILSRLPEEVMMLKKSAFKKLIKFYSVPSFSECSIQCGLQLPCCPLQAIV", "length": 667 }, "evidence": [ { "id": "F1SQH5", "url": "https://omabrowser.org/oma/group/F1SQH5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P19113-1", "protein_name": "Histidine decarboxylase", "gene_name": "HDC", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESCLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAKRHLGLVVFRLKGPNCLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLILSQHCTSQPSPRVGNLISQIRGARAWACGTSLQSVSGAGDDPVQARKIIKQPQRVGAGPMKRENGLHLETLLDPVDDCFSEEAPDATKHKLSSFLFSYLSVQTKKKTVRSLSCNSVPVSAQKPLPTEASVKNGGSSRVRIFSRFPEDMMMLKKSAFKKLIKFYSVPSFPECSSQCGLQLPCCPLQAMV", "length": 662 }, "evidence": [ { "id": "F1SQH5", "url": "https://omabrowser.org/oma/group/F1SQH5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P23738-1", "protein_name": "Histidine decarboxylase", "gene_name": "Hdc", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEPCEYREYREYYRARGKEMVDYISQYLSTVRERQVTPNVQPGYLRAQLPASAPEEPDSWDSIFGDIERVIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNIMDWLAKMLGLPEYFLHHHPSSRGGGVLQSTVSESTLIALLAARKNKILAMKACEPDANESSLNARLVAYTSDQAHSSVEKAGLISLVKIRFLPVDDNFSLRGEALQKAIEEDKQQGLVPVFVCATLGTTGVCAFDRLSELGPICASEGLWLHVDAAYAGTAFLCPELRGFLEGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGAATDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRSDPSFEIPAKRHLGLVVFRLKGPNCLTESVLKEIAKAGQLFLIPATIQDKLIIRFTVTSQFTTKEDILRDWHLIQEAANLVLSQHCTSQPSPRAKNVIPPPPGTRGLSLESVSEGGDDPAQARKIIKQPGASLARREGGSDLETMPDPFDDCFSEEAPNTTKHKLSSFLFSYLSVQNRRKTTRSLSCNSVPMSAQKSLPADASLKNGGSFRARIFSGFPEQMMMMKKGAFKKLIKFYSVPSFPECSSQCARQLPCCPLEAMV", "length": 662 }, "evidence": [ { "id": "F1SQH5", "url": "https://omabrowser.org/oma/group/F1SQH5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5EA83-1", "protein_name": "Histidine decarboxylase", "gene_name": "HDC", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMEPEEYRERGKEMVDYICQYLTTVRERRVTPDVRPGYLRAQLPESAPMEPDSWDSIFGDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPGSQGGGVLQSTVSESTLIALLAARKNKILEMKASEPEADESFLNARLVAYASDQAHSSVEKAGLISLVKMKFLPVDENFSLRGEALQKAIKEDRERGLVPIFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVDPVYLRHADSGVATDFMHWQIPLSRRFRSIKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPFFEIPAKRHLGLVVFRLKGPNCLTESVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIQDAATLILSQHCTSQPSPQGANLILQTRGPRALAKEMSFPSVNGAGDDPAHSRKIVMQPPRVGASPVSRHLETLLDPLDDCFSEEAPDVTEHKLSSFLFSYLSVQNKRKAVRSLSCNSVPVSAQKQLTTEGSVKNGSSSRVRIFSRFPEEVMMLKKSAFKKLIKFYSVPNFPECSSQCGLQLPCCPLQAMV", "length": 658 }, "evidence": [ { "id": "F1SQH5", "url": "https://omabrowser.org/oma/group/F1SQH5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "pyridoxal phosphate binding", "id": "GO:0030170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030170", "evidence": [ { "database": "UniProtKB", "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ], "pmid": "" }, { "name": "histidine decarboxylase activity", "id": "GO:0004398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004398", "evidence": [ { "database": "UniProtKB", "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "amino acid metabolic process", "id": "GO:0006520", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006520", "evidence": [ { "database": "UniProtKB", "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ], "pmid": "" }, { "name": "catecholamine biosynthetic process", "id": "GO:0042423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042423", "evidence": [ { "database": "UniProtKB", "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ], "pmid": "" }, { "name": "carboxylic acid metabolic process", "id": "GO:0019752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019752", "evidence": [ { "database": "UniProtKB", "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ], "pmid": "" }, { "name": "L-histidine catabolic process", "id": "GO:0006548", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006548", "evidence": [ { "database": "UniProtKB", "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ], "pmid": "" }, { "name": "histamine biosynthetic process", "id": "GO:0001694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001694", "evidence": [ { "database": "UniProtKB", "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SQH5", "url": "https://www.uniprot.org/uniprotkb/F1SQH5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-977301", "name": "Histidine is decarboxylated to histamine", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [ "R-ALL-175992" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-977301", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-977301" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-175992", "participant_name": "Hist [cytosol]", "crossref": [ { "id": "ZINC000000388081", "database": "ZINC", "url": "" }, { "id": "C00388", "database": "COMPOUND", "url": "" }, { "id": "58432", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQH5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 662, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQH5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQH5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 216, "end_pos": 218 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQN2-1", "uniprot_ac": "F1SQN2", "uniprot_id": "F1SQN2_PIG", "mass": { "chemical_mass": 176347.0, "monoisotopic_mass": 176347.0 }, "refseq": { "ac": "XP_020948417", "name": "plexin-C1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948417" }, "gene_names": [ { "name": "PLXNC1", "type": "recommended", "evidence": [ { "id": "F1SQN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ] }, { "name": "PLXNC1", "type": "synonym", "evidence": [ { "id": "XP_020948417", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948417" } ] } ], "protein_names": [ { "name": "Plexin-C1", "type": "recommended", "evidence": [ { "id": "F1SQN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN2/entry#names_and_taxonomy" } ] }, { "name": "Virus-encoded semaphorin protein receptor", "type": "synonym", "evidence": [ { "id": "F1SQN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN2/entry#names_and_taxonomy" } ] }, { "name": "plexin-C1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020948417", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948417" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLXNC1", "url": "https://www.uniprot.org/uniprotkb/F1SQN2", "locus": { "chromosome": "5", "start_pos": 88900234, "end_pos": 89055924, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000907", "url": "https://www.ensembl.org/id/ENSSSCG00000000907" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000907", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000907", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00102", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00102", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11246", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11246", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12789", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12789", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519487", "url": "https://www.ncbi.nlm.nih.gov/gene/100519487", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031148", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031148", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046800", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046800", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ETPIFHR", "url": "https://omabrowser.org/oma/group/ETPIFHR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR22625", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22625", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22625:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22625:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01437", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01437", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08337", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08337", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20170", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20170", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-416700", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416700", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020948417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948417", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RLY9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RLY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQN2-1", "url": "https://www.uniprot.org/uniprotkb/F1SQN2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELSRRKASPRPPRRAAPLPLLAYLLALAAPGRGADEPVWRSEQAIGAIAASRADGVFVASGSCLDQLDYSLEHRLSRLYRDQAGNCTEPVPLTPPARPRPGSSFSKLLLPYREGAAGLGGLLLTGWTFDRGACEVRPLGNLSRSSLRNGTEVVSCHPQGSTAGVVYRAGPQNRWYLAVAATYVLPEPETASRCNPAASDRGMAIALKDTEGRSLATQELGRLRLREGGGSLHFVDAFLWNGSVYFPYYPYNYTSGAATGWPSMARIAKSNEVLFQGQAALDCGHGHPDGRRLLLSSSLVEALDVWAGVFSAATGEGQERRSPATTALCLFRMREIQARTRTCSWDFQAENHCKEGDQPERVQPIASSTLIHSDLTSVYGTVVMNRTVLFLGTGDGQLLKVILGENWTSNCPEVIYEIKEETPVFYKLVPHPEKNIYIYLTAGKEVRRIRVANCNKHKSCSECLAATDPHCGWCHSLQRCTFQEDCVRVESSENWLDISSGAKQCPQIHLSRSSKDKTTVTVVGSFSPRRSECLVKTVDTGKVLCKGKSVSNETCTCSIPTRASYKDVSIVTMFSFGSWHLSKRFSFTNCSSLRGCPVCIGTGCTWCKSEKKCIHPFVACDPSDYERNQELCPVALEKWARPKSAGGGRFKENQRNQTNQGLQVFRIRSIEPQKISTLGKSNVIVTGENFTRAANITMILKGTSTCDKDVIQVSHVINDTHMNFSLPSSRKEMKDVCIQFDGGDCSPVGPLSYIALPHCSLIYPATTWLSGGQHITIMGRNFDVIDSLIILPEPKDKNISEYCMATYCRFSAPKLKSLKGRTNVTVKLRVQETFLDCGSLQYLDDPRFTGYRVEPEVDTELEVKIQKENDNFNISKKDIEITLFHGESETSNCTFENITRNQDLTTIFCKIKHITSANSIAASSKKVRVILGNLKLDVERESVLSTWYFLIALPVLLVIVIFAAVGVTRHKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDASDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLMEQSSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFSTVALTVTFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQVGTRHKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFKKIANFPSDVEYSEDHCHLILPDSEAFQDVQGKRHRGKHKFKVKEMYLTKLLSTKVAIHSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQAENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDGCLSVIAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSSEMEEFLTQESKKHENEFNEEVALTEIYKYIIKYFDEILNKLERERGLEEAQKQLLHVKVLFEEKKKCKWM", "length": 1570, "header": "tr|F1SQN2-1|F1SQN2_PIG Isoform 1 of Plexin-C1 OS=Sus scrofa OX=9823 GN=PLXNC1 PE=3 SV=3 CANONICAL=F1SQN2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RLY9-1", "url": "https://www.uniprot.org/uniprotkb/F1SQN2/entry#A0A5G2RLY9-1", "sequence": { "sequence": "MELSRRKASPRPPRRAAPLPLLAYLLALAAPGRGADEPVWRSEQAIGAIAASRADGVFVASGSCLDQLDYSLEHRLSRLYRDQAGNCTEPVPLTPPARPRPGSSFSKLLLPYREGAAGLGGLLLTGWTFDRGACEVRPLGNLSRSSLRNGTEVVSCHPQGSTAGVVYRAGPQNRWYLAVAATYVLPEPETASRCNPAASDRGMAIALKDTEGRSLATQELGRLRLREGGGSLHFVDAFLWNGSVYFPYYPYNYTSGAATGWPSMARIAKSNEVLFQGQAALDCGHGHPDGRRLLLSSSLVEALDVWAGVFSAATGEGQERRSPATTALCLFRMREIQARTRTCSWDFQAENHCKEGDQPERVQPIASSTLIHSDLTSVYGTVVMNRTVLFLGTGDGQLLKVILGENWTSNCPEVIYEIKEETPVFYKLVPHPEKNIYIYLTAGKEVRRIRVANCNKHKSCSECLAATDPHCGWCHSLQRCTFQEDCVRVESSENWLDISSGAKQCPQIHLSRSSKDKTTVTVVGSFSPRRSECLVKTVDTGKVLCKGKSVSNETCTCSIPTRASYKDVSIVTMFSFGSWHLSKRFSFTNCSSLRGCPVCIGTGCTWCKSEKKCIHPFVACDPSDYERNQELCPVALEKWARPKSAGGGRFKENQRNQTNQGLQVFRIRSIEPQKISTLGKSNVIVTGENFTRAANITMILKGTSTCDKDVIQVSHVINDTHMNFSLPSSRKEMKDVCIQFDGGDCSPVGPLSYIALPHCSLIYPATTWLSGGQHITIMGRNFDVIDSLIILPEPKDKNISEYCMATYCRFSAPKLKSLKGRTNVTVKLRVQETFLDCGSLQYLDDPRFTGYRVEPEVDTELEVKIQKENDNFNISKKDIEITLFHGESETSNCTFENITRNQDLTTIFCKIKHITSANSIAASSKKVRVILGNLKLDVERESVLSTWYFLIALPVLLVIVIFAAVGVTRHKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDASDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLMEQSSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFSTVALTVTFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQVGTRHKELLDIDSSSVILEDGITKLNTIGHYEVGTRFDVEYSEDHCHLILPDSEAFQDVQGKRHRGKHKFKVKEMYLTKLLSTKVAIHSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQAENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDGCLSVIAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSSEMEEFLTQESKKHENEFNEEVALTEIYKYIIKYFDEILNKLERERGLEEAQKQLLHVKVLFEEKKKCKWM", "length": 1557, "header": "tr|A0A5G2RLY9-1|F1SQN2_PIG Computationally mapped isoform of Plexin-C1 OS=Sus scrofa OX=9823 GN=PLXNC1 PE=3 SV=1 CANONICAL=F1SQN2-1" }, "locus": { "chromosome": "5", "start_pos": 89055725, "end_pos": 88902638, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085407.2", "url": "https://www.ensembl.org/id/ENSSSCT00000085407.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073464.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073464.1" } ] } }, { "isoform_ac": "F1SQN2-1", "url": "https://www.uniprot.org/uniprotkb/F1SQN2/entry#F1SQN2-1", "sequence": { "sequence": "MELSRRKASPRPPRRAAPLPLLAYLLALAAPGRGADEPVWRSEQAIGAIAASRADGVFVASGSCLDQLDYSLEHRLSRLYRDQAGNCTEPVPLTPPARPRPGSSFSKLLLPYREGAAGLGGLLLTGWTFDRGACEVRPLGNLSRSSLRNGTEVVSCHPQGSTAGVVYRAGPQNRWYLAVAATYVLPEPETASRCNPAASDRGMAIALKDTEGRSLATQELGRLRLREGGGSLHFVDAFLWNGSVYFPYYPYNYTSGAATGWPSMARIAKSNEVLFQGQAALDCGHGHPDGRRLLLSSSLVEALDVWAGVFSAATGEGQERRSPATTALCLFRMREIQARTRTCSWDFQAENHCKEGDQPERVQPIASSTLIHSDLTSVYGTVVMNRTVLFLGTGDGQLLKVILGENWTSNCPEVIYEIKEETPVFYKLVPHPEKNIYIYLTAGKEVRRIRVANCNKHKSCSECLAATDPHCGWCHSLQRCTFQEDCVRVESSENWLDISSGAKQCPQIHLSRSSKDKTTVTVVGSFSPRRSECLVKTVDTGKVLCKGKSVSNETCTCSIPTRASYKDVSIVTMFSFGSWHLSKRFSFTNCSSLRGCPVCIGTGCTWCKSEKKCIHPFVACDPSDYERNQELCPVALEKWARPKSAGGGRFKENQRNQTNQGLQVFRIRSIEPQKISTLGKSNVIVTGENFTRAANITMILKGTSTCDKDVIQVSHVINDTHMNFSLPSSRKEMKDVCIQFDGGDCSPVGPLSYIALPHCSLIYPATTWLSGGQHITIMGRNFDVIDSLIILPEPKDKNISEYCMATYCRFSAPKLKSLKGRTNVTVKLRVQETFLDCGSLQYLDDPRFTGYRVEPEVDTELEVKIQKENDNFNISKKDIEITLFHGESETSNCTFENITRNQDLTTIFCKIKHITSANSIAASSKKVRVILGNLKLDVERESVLSTWYFLIALPVLLVIVIFAAVGVTRHKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDASDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLMEQSSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFSTVALTVTFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQVGTRHKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFKKIANFPSDVEYSEDHCHLILPDSEAFQDVQGKRHRGKHKFKVKEMYLTKLLSTKVAIHSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQAENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDGCLSVIAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSSEMEEFLTQESKKHENEFNEEVALTEIYKYIIKYFDEILNKLERERGLEEAQKQLLHVKVLFEEKKKCKWM", "length": 1570, "header": "tr|F1SQN2-1|F1SQN2_PIG Isoform 1 of Plexin-C1 OS=Sus scrofa OX=9823 GN=PLXNC1 PE=3 SV=3 CANONICAL=F1SQN2-1" }, "locus": { "chromosome": "5", "start_pos": 89055725, "end_pos": 88902638, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000991.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000991.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000970.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000970.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RLY9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RLY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-416700", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416700", "resource": "Reactome", "description": "Other semaphorin interactions" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LTZ7-1", "protein_name": "Plexin-C1", "gene_name": "PLXNC1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEVSRRKVPPRPPRPAALLPLLAYLLALAAPGQGADEPVWRSEQAIGAIAVSREDGVFVASGSCLDQLDYSLEHRLSRLYRDQAGNCSEPVPLTPPARPRPGSSFSKLLLPYREGAAGLEGLLLTGWTFDRGACEVRPLGNLSRSSLRNGTEVVSCHPQGSTAGVVYYANDTQSWYLAVAATYVLPESETASRCNPAASDRETAIALKDTGKRSLATKETGRLKLRDGGGSLHFVDAFLWNGSVYFPYYPYNYSTGAATGWPSMARIAKSSEMLLFQGQAALNCGHGRPDGRRLLLSSSLVEALDVWAGVFSAATGEDQEKRSPTTTALCLFRMSEIQARTKICRWDFEIDNNENNCKNEDEPEKVEPIASSTLIHSDLTSVYGTVVMNRTVLFLGTGDGQLLKVILSENLASNCPEVIYEIKEETPVFYKLVPHPKKNIYIYLTAGKEVRRIRVANCGKHKSCWECLAATDPHCGWCHSLQRCTFKEDCEHLNNSENWLDVLSGAKKCPQIHLFRSSKDKTTVTVVGSFSPRHSECVVKNVDTGRMLCKGKSAHNETCTCIIPTRTAYKDVLVVNMTFSFGSWRVSKRFNFTNCSSLRECPGCIRTGCAWCKSERKCIHPFTACDPLDYKRNQDLCPVAFQKWTPPKTAGEGRFKENMSNRTTWGLQVFSVTSIEPQKISTLGKSNVTVTGANFTEASNITMILKGTSTCDKDVIQVSHVVNATHMQFSLPSSRKEMKDVCIQFDGGNCASVGPLSYVALPHCSLIYPATTWISGGQNITIMGRNFDVIDNLIFSQEVKEKNVSEYCMANSCRFLAPSLKSSKGPINVTVKLRVQETALDCGSLQYLDDPRFTGYRAESEVDTELEVKIQKENDNFNISKEDIEITLFYGKNKSLNCSFENITRNQDLTTIFCKIKHITAANSIATSSKKVDVKLGNLKLSVERESVLSPWYFLIGLPILLVFVIFVAVGVTRHKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDASDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLMEQCSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFSTVALTVTFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQVGTRHKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFKKIANFTSDVEYTEDHCHLILPDSEAFQDVQGKRHRGKHKFKVKEMYLTKLLSTKVAIHSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQAENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDGCLSVIAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSSEMEEFLTQESKKHENEFNEEVALTEIYKYIIKYFDEILNKLERERGLEEAQKQLLHVKVLFEEKKKCKWMCPAGDFTPSTITEE", "length": 1589 }, "evidence": [ { "id": "F1SQN2", "url": "https://omabrowser.org/oma/group/F1SQN2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4A7M0-1", "protein_name": "Plexin-C1", "gene_name": "Plxnc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVSRRKAPPRPPYPAAPLPLIAYLLALAVPARGADEPVWRSEQAIGAIAASRADGVFVASGSCLDQLDYSLKNRLSRLYRDQAGNCTEPVSLAPPARPRPGSSFSKLLLPYREGATGLEGLLLTGWTFDRGACEVRPLGNLNRSSLRNGTEVVSCHPQGSTAGVVYRASGTDLWYLAVAATYVLPEPETANRCNPAASDRDTAIALKNTEGRSLATQELGRLKLRGSAGSLHFVDAFLWNGSVYFPYYPYNYTSGAATGWPSMARIAQSTEVLFQGQAALDCGHGHPEGRRLLLSSSLVEAVDIWAGVFSAATGEGQEKRSPATTALCLFRMSEIQARARSCSWDFQATEHNCKEGDQPEQVQPIASSTLIHSDLTSVYGTVVMNRIVLFLGTGDGQLLKVVLGENLTSNCPEVIYEIKEETPVFYKLVPHPVKDTYIYLTAGKEVRRIQVANCSKRKSCFQCLAAADPHCGWCLPLQRSSFMGGGDAVRHFLNWRSMAEGPHHTPKSQWSKALKERTTVTIVGSVSARHSECVVKNADTGKLLCQGRSQMNRTCACNIPSRPSNNVFVVNATFTFPSWSVSERFNFTNCASVRECPACIETGCAWCKRDKRCIHPFTPCEPSDYERNQELCHVAVEKPPKDSGGGRVKESKRNRTDPALQVFYIKAIEPQKISTLGKSNVIVTGANFTQASNITMILRGTSTCEKDVIRVSHVLNDTHMKFSLPSSRKEMKDVCIQFDGGNCSSAGALSYIALPHCSLIVPATTWISGGQNITIMGRNFDVIDNLIISHELKGNINVSINVSEYCMATSCRFLAPNLKSSKGRTNVVVKLRVQDTYLDCGTLQYLEDPRFTGYRVESEIDTELEVKIQKENDNFNISRDDIDITLFHGENKQFNCSFENITRNQDLTTILCKIKSIKNANTIATSSKKVRVKLGNLELYVEQESVPSTWYFLIALPILLAIVIVVAVVVTRHKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDANDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLMEQCSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFNTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQVGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFKKIANFTSDVEYSDDHCHLILPDSEAFQVVQGKRHRGKHKFKVKEMYLTKLLSTKVAIHSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQAENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDSCLSVIAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSLEMEEFLTQESKKHENEFNEEVALTEIYKYIVKYFDEILNKLERERGLEEAQKQLLHVKVLFDEKKKCKWM", "length": 1574 }, "evidence": [ { "id": "F1SQN2", "url": "https://omabrowser.org/oma/group/F1SQN2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O60486-1", "protein_name": "Plexin-C1", "gene_name": "PLXNC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEVSRRKAPPRPPRPAAPLPLLAYLLALAAPGRGADEPVWRSEQAIGAIAASQEDGVFVASGSCLDQLDYSLEHSLSRLYRDQAGNCTEPVSLAPPARPRPGSSFSKLLLPYREGAAGLGGLLLTGWTFDRGACEVRPLGNLSRNSLRNGTEVVSCHPQGSTAGVVYRAGRNNRWYLAVAATYVLPEPETASRCNPAASDHDTAIALKDTEGRSLATQELGRLKLCEGAGSLHFVDAFLWNGSIYFPYYPYNYTSGAATGWPSMARIAQSTEVLFQGQASLDCGHGHPDGRRLLLSSSLVEALDVWAGVFSAAAGEGQERRSPTTTALCLFRMSEIQARAKRVSWDFKTAESHCKEGDQPERVQPIASSTLIHSDLTSVYGTVVMNRTVLFLGTGDGQLLKVILGENLTSNCPEVIYEIKEETPVFYKLVPDPVKNIYIYLTAGKEVRRIRVANCNKHKSCSECLTATDPHCGWCHSLQRCTFQGDCVHSENLENWLDISSGAKKCPKIQIIRSSKEKTTVTMVGSFSPRHSKCMVKNVDSSRELCQNKSQPNRTCTCSIPTRATYKDVSVVNVMFSFGSWNLSDRFNFTNCSSLKECPACVETGCAWCKSARRCIHPFTACDPSDYERNQEQCPVAVEKTSGGGRPKENKGNRTNQALQVFYIKSIEPQKVSTLGKSNVIVTGANFTRASNITMILKGTSTCDKDVIQVSHVLNDTHMKFSLPSSRKEMKDVCIQFDGGNCSSVGSLSYIALPHCSLIFPATTWISGGQNITMMGRNFDVIDNLIISHELKGNINVSEYCVATYCGFLAPSLKSSKVRTNVTVKLRVQDTYLDCGTLQYREDPRFTGYRVESEVDTELEVKIQKENDNFNISKKDIEITLFHGENGQLNCSFENITRNQDLTTILCKIKGIKTASTIANSSKKVRVKLGNLELYVEQESVPSTWYFLIVLPVLLVIVIFAAVGVTRHKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDANDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLMEQCSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFSTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFKKIANFTSDVEYSDDHCHLILPDSEAFQDVQGKRHRGKHKFKVKEMYLTKLLSTKVAIHSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQAENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDGCLSVIAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSSEMEEFLTQESKKHENEFNEEVALTEIYKYIVKYFDEILNKLERERGLEEAQKQLLHVKVLFDEKKKCKWM", "length": 1568 }, "evidence": [ { "id": "F1SQN2", "url": "https://omabrowser.org/oma/group/F1SQN2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QZC2-1", "protein_name": "Plexin-C1", "gene_name": "Plxnc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSRRKTPPRPPYPAAPLPLIAYLLALAAPARGADEPVWRSEQAIGAIAASRADGVFVASGSCLDQLDYSLKNRLSRLYRDQAGNCTEPVSLAPPARPRPGSSFSKLLLPYREGATGLEGLLLTGWTFDRGACEVRPLGNLNRSSLRNGTEVVSCHPQGSTAGVVYRASGTDLWYLAVAATYVLPEPETANRCNPAASDRDTAIALKNTEGRSLATQELGRLKLRGSAGSLHFVDAFLWNGSVYFPYYPYNYTSGAATGWPSMARIAQSTEVLFQGQAALDCDHGHPEGRRLLLSSSLVEAVDIWAGVFSAATGEGQERRSPATTALCLFRMSEIQAHARSCSWDFQATEHNCKEGDRPERVQPIASSTLIHSDLTSVYGTVVMNRTVLFLGTGDGQLLKVVLGENLTSNCPEVIYEIKEETPVFYKLVPHPMKNIYIYLTAGKEVRRIPVANCSKRKSCSECLAAADPHCGWCLPLQRCTFQGDCTHAGSFENWLDISSGPKKCPKIQILRSLRERTTVTIVGSISARHSECVVKNADTGKLLCQGRSQLNWTCACNIPSRPSYNVLVVNATFSFPSWNLSERFNFTNCASLKECPACIRSGCAWCKRDKKCIHPFTPCEPSDYERNQELCQVAVEKSPKDSGGGRVKESKRNRTDGAVQVFYIKAIEPQKISTLGKSNVIVTGANFTQASNITMILRGTSTCERDVIRVSHVLNDTHMKFSLPSSRKEMKDVCIQFDGGTCSSAGALSYIALPHCSLIVPATTWISGGQNITIMGRNFDVIDNLIISHELKGNANVNINVSEYCAATFCRFLAPNLKSSKVRTNVAVKLRVQDTYLDCGTLQYLEDPRFTGYRVESEIDTELEVKIQKENDNFNISKDDIDITLFHGENKQFNCSFENITRNQDLTTILCKIKSIKNANTIASSSKKVRVKLGNLELYVEQESVPSTWYFLIALPILLAIVIVVAVVVTRYKSKELSRKQSQQLELLESELRKEIRDGFAELQMDKLDVVDSFGTVPFLDYKHFALRTFFPESGGFTHIFTEDMHNRDANDKNESLTALDALICNKSFLVTVIHTLEKQKNFSVKDRCLFASFLTIALQTKLVYLTSILEVLTRDLMEQCSNMQPKLMLRRTESVVEKLLTNWMSVCLSGFLRETVGEPFYLLVTTLNQKINKGPVDVITCKALYTLNEDWLLWQVPEFNTVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKVFQAFLSKNGSPYGLQLNEIGLELQVGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNGSTIKVFKKIANFTSDVEYSDDHCHLILPDSEAFQVVQGKRHRGKHKFKVKEMYLTKLLSTKVAIHSVLEKLFRSIWSLPNSRAPFAIKYFFDFLDAQAENKKITDPDVVHIWKTNSLPLRFWVNILKNPQFVFDIKKTPHIDSCLSVIAQAFMDAFSLTEQQLGKEAPTNKLLYAKDIPTYKEEVKSYYKAIRDLPPLSSLEMEEFLTQESKKHENEFNEEVALTEIYKYIVKYFDEILNKLERERGLEEAQKQLLHVKVLFDEKKKCKWM", "length": 1574 }, "evidence": [ { "id": "F1SQN2", "url": "https://omabrowser.org/oma/group/F1SQN2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" }, { "name": "semaphorin receptor complex", "id": "GO:0002116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002116", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" }, { "name": "cerebellar climbing fiber to Purkinje cell synapse", "id": "GO:0150053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150053", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "semaphorin receptor activity", "id": "GO:0017154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017154", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "negative regulation of cell adhesion", "id": "GO:0007162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007162", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" }, { "name": "semaphorin-plexin signaling pathway", "id": "GO:0071526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071526", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" }, { "name": "synapse assembly", "id": "GO:0007416", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007416", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" }, { "name": "regulation of cell migration", "id": "GO:0030334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030334", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" }, { "name": "regulation of cell shape", "id": "GO:0008360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008360", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" }, { "name": "positive regulation of axonogenesis", "id": "GO:0050772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050772", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" }, { "name": "regulation of synapse pruning", "id": "GO:1905806", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905806", "evidence": [ { "database": "UniProtKB", "id": "F1SQN2", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1052, "end_pos": 1054, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1064, "end_pos": 1066, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1080, "end_pos": 1082, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1213, "end_pos": 1215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1221, "end_pos": 1223, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1247, "end_pos": 1249, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1298, "end_pos": 1300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 385, "end_pos": 387, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 552, "end_pos": 554, "annotation": "n_glycosylation_sequon" }, { "start_pos": 589, "end_pos": 591, "annotation": "n_glycosylation_sequon" }, { "start_pos": 656, "end_pos": 658, "annotation": "n_glycosylation_sequon" }, { "start_pos": 689, "end_pos": 691, "annotation": "n_glycosylation_sequon" }, { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" }, { "start_pos": 718, "end_pos": 720, "annotation": "n_glycosylation_sequon" }, { "start_pos": 723, "end_pos": 725, "annotation": "n_glycosylation_sequon" }, { "start_pos": 798, "end_pos": 800, "annotation": "n_glycosylation_sequon" }, { "start_pos": 823, "end_pos": 825, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" }, { "start_pos": 873, "end_pos": 875, "annotation": "n_glycosylation_sequon" }, { "start_pos": 892, "end_pos": 894, "annotation": "n_glycosylation_sequon" }, { "start_pos": 897, "end_pos": 899, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQN2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN2" }, { "id": "PS51004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sema", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 451, "start_aa": "Met", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1052, "end_pos": 1054 }, { "start_pos": 1064, "end_pos": 1066 }, { "start_pos": 1080, "end_pos": 1082 }, { "start_pos": 1213, "end_pos": 1215 }, { "start_pos": 1221, "end_pos": 1223 }, { "start_pos": 1247, "end_pos": 1249 }, { "start_pos": 1298, "end_pos": 1300 }, { "start_pos": 141, "end_pos": 143 }, { "start_pos": 149, "end_pos": 151 }, { "start_pos": 241, "end_pos": 243 }, { "start_pos": 252, "end_pos": 254 }, { "start_pos": 385, "end_pos": 387 }, { "start_pos": 406, "end_pos": 408 }, { "start_pos": 552, "end_pos": 554 }, { "start_pos": 589, "end_pos": 591 }, { "start_pos": 656, "end_pos": 658 }, { "start_pos": 689, "end_pos": 691 }, { "start_pos": 695, "end_pos": 697 }, { "start_pos": 718, "end_pos": 720 }, { "start_pos": 723, "end_pos": 725 }, { "start_pos": 798, "end_pos": 800 }, { "start_pos": 823, "end_pos": 825 }, { "start_pos": 86, "end_pos": 88 }, { "start_pos": 873, "end_pos": 875 }, { "start_pos": 892, "end_pos": 894 }, { "start_pos": 897, "end_pos": 899 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L774-1", "uniprot_ac": "I3L774", "uniprot_id": "I3L774_PIG", "mass": { "chemical_mass": 132739.0, "monoisotopic_mass": 132739.0 }, "refseq": { "ac": "XP_020932869", "name": "lysine-specific demethylase 2A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932869" }, "gene_names": [ { "name": "KDM2A", "type": "recommended", "evidence": [ { "id": "I3L774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ] }, { "name": "FBXL11", "type": "synonym", "evidence": [ { "id": "XP_020932869", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932869" } ] }, { "name": "JHDM1A", "type": "synonym", "evidence": [ { "id": "XP_020932869", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932869" } ] }, { "name": "KDM2A", "type": "synonym", "evidence": [ { "id": "XP_020932869", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932869" } ] } ], "protein_names": [ { "name": "[histone H3]-dimethyl-L-lysine(36) demethylase", "type": "recommended", "evidence": [ { "id": "I3L774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L774/entry#names_and_taxonomy" } ] }, { "name": "1.14.11.27", "type": "synonym", "evidence": [ { "id": "I3L774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L774/entry#names_and_taxonomy" } ] }, { "name": "lysine-specific demethylase 2A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020932869", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932869" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KDM2A", "url": "https://www.uniprot.org/uniprotkb/I3L774", "locus": { "chromosome": "2", "start_pos": 5240312, "end_pos": 5357829, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029637", "url": "https://www.ensembl.org/id/ENSSSCG00000029637" } ] } } ], "crossref": [ { "id": "ENSSSCG00000029637", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029637", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15643", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15643", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21784", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21784", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22181", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22181", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100294703", "url": "https://www.ncbi.nlm.nih.gov/gene/100294703", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006553", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006553", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "XQDNRSK", "url": "https://omabrowser.org/oma/group/XQDNRSK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L774", "url": "https://www.orthodb.org/?gene=I3L774", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23123", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23123", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16866", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16866", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17811", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17811", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3214842", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214842", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020932869", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932869", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "42032", "url": "https://www.rhea-db.org/rhea/42032", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1TBJ5", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TBJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TBJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TBJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L774-1", "url": "https://www.uniprot.org/uniprotkb/I3L774-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLP0", "url": "https://www.uniprot.org/uniprotkb/I3LLP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLP0-1", "url": "https://www.uniprot.org/uniprotkb/I3LLP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEAVDREPRRLSNRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTLSGDSTSDSSRGSHNGQVWDSQCSPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELASSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSEKAQKRKMEESDEEAVQAKVLRPLRSCDEPLTPPPHSPTSMLQLIHDPASPRGVVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRHSPRVLVQHCPARTPQRGDEEGLGGDEEEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMSVFRYLSRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPADKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSSTRYSLTELNMAGCNKLTDQTLIYLRRIANVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDEKLIQKIS", "length": 1162, "header": "tr|I3L774-1|I3L774_PIG Isoform 1 of [histone H3]-dimethyl-L-lysine(36) demethylase OS=Sus scrofa OX=9823 GN=KDM2A PE=3 SV=2 CANONICAL=I3L774-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TBJ5-1", "url": "https://www.uniprot.org/uniprotkb/I3L774/entry#A0A4X1TBJ5-1", "sequence": { "sequence": "MVPSRFVSAEPQWELLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEAVDREPRRLSNRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTLSGDSTSDSSRGSHNGQVWDSQCSPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELASSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSEKAQKRKMEESDEEAVQAKVLRPLRSCDEPLTPPPHSPTSMLQLIHDPASPRGVVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRHSPRVLVQHCPARTPQRGDEEGLGGDEEEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMSVFRYLSRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPADKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSSTRYSLTELNMAGCNKLTDQTLIYLRRIANVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDEKLIQKIS", "length": 1164, "header": "tr|A0A4X1TBJ5-1|I3L774_PIG Computationally mapped isoform of [histone H3]-dimethyl-L-lysine(36) demethylase OS=Sus scrofa OX=9823 GN=KDM2A PE=3 SV=1 CANONICAL=I3L774-1" }, "locus": { "chromosome": "2", "start_pos": 5293429, "end_pos": 5241611, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042616.2", "url": "https://www.ensembl.org/id/ENSSSCT00000042616.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055554.2", "url": "https://www.ensembl.org/id/ENSSSCP00000055554.2" } ] } }, { "isoform_ac": "I3L774-1", "url": "https://www.uniprot.org/uniprotkb/I3L774/entry#I3L774-1", "sequence": { "sequence": "MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEAVDREPRRLSNRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTLSGDSTSDSSRGSHNGQVWDSQCSPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELASSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSEKAQKRKMEESDEEAVQAKVLRPLRSCDEPLTPPPHSPTSMLQLIHDPASPRGVVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRHSPRVLVQHCPARTPQRGDEEGLGGDEEEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMSVFRYLSRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPADKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSSTRYSLTELNMAGCNKLTDQTLIYLRRIANVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDEKLIQKIS", "length": 1162, "header": "tr|I3L774-1|I3L774_PIG Isoform 1 of [histone H3]-dimethyl-L-lysine(36) demethylase OS=Sus scrofa OX=9823 GN=KDM2A PE=3 SV=2 CANONICAL=I3L774-1" }, "locus": { "chromosome": "2", "start_pos": 5355523, "end_pos": 5241611, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022488.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022488.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019878.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019878.2" } ] } }, { "isoform_ac": "I3LLP0-1", "url": "https://www.uniprot.org/uniprotkb/I3L774/entry#I3LLP0-1", "sequence": { "sequence": "MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEAVDREPRRLSNRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTLSGDSTSDSSRGSHNGQVWDSQCSPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELASSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSEKAQKRKMEESDEEAVQAKVLRPLRSCDEPLTPPPHSPTSMLQLIHDPASPRGVVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVLQETLDKN", "length": 781, "header": "tr|I3LLP0-1|I3L774_PIG Computationally mapped isoform of [histone H3]-dimethyl-L-lysine(36) demethylase OS=Sus scrofa OX=9823 GN=KDM2A PE=3 SV=3 CANONICAL=I3L774-1" }, "locus": { "chromosome": "2", "start_pos": 5355523, "end_pos": 5243885, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031254.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031254.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025010.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025010.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 132, "start_aa": "Thr", "end_pos": 132, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr132", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LLP0", "url": "https://www.uniprot.org/uniprotkb/I3LLP0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3214842", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214842", "resource": "Reactome", "description": "HDMs demethylate histones" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5NW01-1", "protein_name": "[histone H3]-dimethyl-L-lysine(36) demethylase", "gene_name": "KDM2A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAAAPVRGQRRRRDLEEEDDDSSPGVSFSLSSEESEMEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLSTNKFNSTFVIFMEGKDFTVEYIQRGGLRDPLIFRSSDGLGIKMPDPDFSVNDVRLCVGSRRMVDVMDVNTQRDIEMSMAQWARYYETPEAEREKLYNVISLEFSHTKLENLVQRPATVDLIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVKGCYTDFHVDFGGTSVWYHIHRGGKIFWLIPPTPQNLELYENWLLSGKQGDIFLGDRVSECQRIELKQGYTFVIPSGWIHAVYTPMDTLVFGGNFLHSFNIPMQLRIYSIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITSRSHLTKDFQKESLSMDMELSSSDSVNMEEEEEEEEDAAGKEPRRPITRRSVLTSPVANGANVDYDELSRSCRSSLPALKKSPSIDSSDSSRGSQNGQAWEPHGGSPRKSRRVHLTQFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKLLLEEYANSDPKLALTGIPIVQWPKRDKLKLQARLRVRLPTIPITKPHTMKPTPRPTPIRPTMSPIVSGARRRRVRCRKCKACMQGECGMCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCALCGEVDQNEDSQDFEKKLMECCICNEIVHPGCLQMDGEGLLNDELPNCWECPKCYQGDDTEKGQGARWHARARLLQKRRALPGPPARQRAEHTWQHSARWRLLTLPRMLPYRYHIDCRTVPAAVDGSRAAKKRKVEESDDDMAQAKVLRPLRSCEEPLTPPPNSPTPMLQLIHDPVSPRGVVTRSSPGAGPSEHHSASRDERFKRRQLLRLQATERTIVREKENNPSGKKELSEVEKAKLHGSYLTVTLQRPTKDVHGTSIVPKLQAITASSANLQHSPRVVMRHTPARMHPRGGGEDEVAAEEDEEDEDEDDENMEEGGAARLNGRGGRVQEGEESWMQREVWMSVFRYLTRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKSITPQALSGIIKRQPISLDLSWTNISKKQLTWLVNRLPGLKDLILAGCSWSAVCALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPSQDNRSKLRNMIDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCNHLTDQSANLLTAVGSSTRNSLTELNMAGCNKLTDQALLYLRRISNVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDEKLIQKIS", "length": 1272 }, "evidence": [ { "id": "I3L774", "url": "https://omabrowser.org/oma/group/I3L774/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2QNV8-1", "protein_name": "[histone H3]-dimethyl-L-lysine(36) demethylase", "gene_name": "Kdm2a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKSSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYSIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDMELNELDSGNGDEEGVDREARRLNSKRSVLTSPVANGVNLDYDVLGKTCRSLPNLKKTLSGDSSSDSSRGSQNGQVWDPQCSPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELASSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSEKAQKRKIEESDEEAVQAKVLRPLRSCEEPLTPPPHSPTSMLQLIHDPVSPRGMVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRPNPRVLMQHCPARNPQRGDEEGLGGEEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMSVFRYLSRKELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSSTRYSLTELNMAGCNKLTDQTLFFLRRIANVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDEKLIQKIS", "length": 1160 }, "evidence": [ { "id": "I3L774", "url": "https://omabrowser.org/oma/group/I3L774/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P59997-1", "protein_name": "Lysine-specific demethylase 2A", "gene_name": "Kdm2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLQTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQWPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLISVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYSIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKDFQKESLSMDMELNELESGNGDEEGVDREARRMNNKRSVLTSPVANGVNLDYDGLGKACRSLPSLKKTLSGDSSSDSTRGSHNGQVWDPQCSPKKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELASSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSDKAQKRKIEESDEEAVQAKVLRPLRSCEEPLTPPPHSPTSMLQLIHDPVSPRGMVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRPNPRVLMQHCPARNPQHGDEEGLGGEEEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMSVFRYLSRKELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSSTRYSLTELNMAGCNKLTDQTLFFLRRIANVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDEKLIQKIS", "length": 1161 }, "evidence": [ { "id": "I3L774", "url": "https://omabrowser.org/oma/group/I3L774/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y2K7-1", "protein_name": "Lysine-specific demethylase 2A", "gene_name": "KDM2A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEAVDREPRRLSSRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTLAGDSSSDCSRGSHNGQVWDPQCAPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELANSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSEKAQKRKMEESDEEAVQAKVLRPLRSCDEPLTPPPHSPTSMLQLIHDPVSPRGMVTRSSPGAGPSDHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKIRGSYLTVTLQRPTKELHGTSIVPKLQAITASSANLRHSPRVLVQHCPARTPQRGDEEGLGGEEEEEEEEEEEDDSAEEGGAARLNGRGSWAQDGDESWMQREVWMSVFRYLSRRELCECMRVCKTWYKWCCDKRLWTKIDLSRCKAIVPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPADKPGQDNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSSTRYSLTELNMAGCNKLTDQTLIYLRRIANVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDEKLIQKIS", "length": 1162 }, "evidence": [ { "id": "I3L774", "url": "https://omabrowser.org/oma/group/I3L774/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "double-strand break repair via nonhomologous end joining", "id": "GO:0006303", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006303", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "regulation of circadian rhythm", "id": "GO:0042752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042752", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "negative regulation of transcription by competitive promoter binding", "id": "GO:0010944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010944", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "circadian regulation of gene expression", "id": "GO:0032922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032922", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 7, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "histone demethylase activity", "id": "GO:0032452", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032452", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "unmethylated CpG binding", "id": "GO:0045322", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045322", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "histone H3K36me/H3K36me2 demethylase activity", "id": "GO:0140680", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140680", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" }, { "name": "methyltransferase activity", "id": "GO:0008168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008168", "evidence": [ { "database": "UniProtKB", "id": "I3L774", "url": "https://www.uniprot.org/uniprotkb/I3L774" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1034, "end_pos": 1036, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1040, "end_pos": 1042, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1120, "end_pos": 1122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 346, "end_pos": 348, "annotation": "n_glycosylation_sequon" }, { "start_pos": 963, "end_pos": 965, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "42032", "name": "", "equation": "N(6),N(6)-dimethyl-L-lysyl(36)-[histone H3] + 2 2-oxoglutarate + 2 O2 = L-lysyl(36)-[histone H3] + 2 formaldehyde + 2 succinate + 2 CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "42032", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/42032" } ] }, { "id": "R-SSC-4722133", "name": "KDM2A, KDM2B, KDM4A demethylate MeK37-histone H3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [ "R-ALL-159939", "R-ALL-159942" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-4722133", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4722133" } ] }, { "id": "R-SSC-5661114", "name": "KDM2A, KDM2B, KDM4A demethylate Me2K37-histone H3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5661114", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5661114" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-159939", "participant_name": "SUCCA [nucleoplasm]", "crossref": [ { "id": "ZINC000000895030", "database": "ZINC", "url": "" }, { "id": "C00042", "database": "COMPOUND", "url": "" }, { "id": "30031", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-159942", "participant_name": "CO2 [nucleoplasm]", "crossref": [ { "id": "11533283", "database": "PubChem Substance", "url": "" }, { "id": "16526", "database": "ChEBI", "url": "" }, { "id": "HMDB0001967", "database": "HMDB Metabolite", "url": "" }, { "id": "C00011", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L774" }, { "id": "PS51058", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51058" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CXXC-type", "eco_id": "ECO_0000259", "start_pos": 564, "end_pos": 610, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L774" }, { "id": "PS51184", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "JmjC", "eco_id": "ECO_0000259", "start_pos": 148, "end_pos": 316, "start_aa": "Phe", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L774", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L774" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 617, "end_pos": 678, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 132 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1034, "end_pos": 1036 }, { "start_pos": 1040, "end_pos": 1042 }, { "start_pos": 1120, "end_pos": 1122 }, { "start_pos": 346, "end_pos": 348 }, { "start_pos": 963, "end_pos": 965 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRL7-1", "uniprot_ac": "F1SRL7", "uniprot_id": "F1SRL7_PIG", "mass": { "chemical_mass": 88306.0, "monoisotopic_mass": 88306.0 }, "refseq": { "ac": "XP_005672455", "name": "cadherin-12 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672455" }, "gene_names": [ { "name": "CDH12", "type": "recommended", "evidence": [ { "id": "F1SRL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ] }, { "name": "CDH12", "type": "synonym", "evidence": [ { "id": "XP_005672455", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672455" } ] } ], "protein_names": [ { "name": "Cadherin-12", "type": "recommended", "evidence": [ { "id": "F1SRL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRL7/entry#names_and_taxonomy" } ] }, { "name": "cadherin-12 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005672455", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672455" } ] } ], "function": [ { "annotation": "Cadherins are calcium-dependent cell adhesion proteins.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJM2#function" }, { "database": "UniProtKB", "id": "RU004357", "url": "https://www.uniprot.org/uniprotkb/RU004357#function" } ] }, { "annotation": "Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types.", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7#function" }, { "database": "UniProtKB", "id": "ARBA00037319", "url": "https://www.uniprot.org/uniprotkb/ARBA00037319#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDH12", "url": "https://www.uniprot.org/uniprotkb/F1SRL7", "locus": { "chromosome": "16", "start_pos": 9985126, "end_pos": 10384663, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016799", "url": "https://www.ensembl.org/id/ENSSSCG00000016799" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016799", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016799", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523408", "url": "https://www.ncbi.nlm.nih.gov/gene/100523408", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523408", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523408", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FTRHRPP", "url": "https://omabrowser.org/oma/group/FTRHRPP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRL7", "url": "https://www.orthodb.org/?gene=F1SRL7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418990", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005672455", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672455", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TJM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TJM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SRL7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPGRRPHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSRVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFKLSPEAAIKPNFTVRDFRNNTAGIETQRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIIILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCLPRQRPPVEDNTDIRDFINQRLQENDMDPAAPPYDSLATYAYEGNGSAADSLSSIESLTTEADQDYNYLTDWGPRFKVLADMFGEEESYNPDKVT", "length": 794, "header": "tr|F1SRL7-1|F1SRL7_PIG Isoform 1 of Cadherin-12 OS=Sus scrofa OX=9823 GN=CDH12 PE=4 SV=3 CANONICAL=F1SRL7-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TJM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRL7/entry#A0A4X1TJM2-1", "sequence": { "sequence": "MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPGRRPHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSRVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFKLSPEAAIKPNFTVRDFRNNTAGIETQRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIIILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCLPRQRPPVEDNTDIRDFINQRLQENDMDPAAPPYDSLATYAYEGNGSAADSLSSIESLTTEADQDYNYLTDWGPRFKVLADMFGEEESYNPDKVT", "length": 754, "header": "tr|A0A4X1TJM2-1|F1SRL7_PIG Computationally mapped isoform of Cadherin-12 OS=Sus scrofa OX=9823 GN=CDH12 PE=4 SV=1 CANONICAL=F1SRL7-1" }, "locus": { "chromosome": "16", "start_pos": 10263375, "end_pos": 9985961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024837.3", "url": "https://www.ensembl.org/id/ENSSSCT00000024837.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021265.2", "url": "https://www.ensembl.org/id/ENSSSCP00000021265.2" } ] } }, { "isoform_ac": "F1SRL7-1", "url": "https://www.uniprot.org/uniprotkb/F1SRL7/entry#F1SRL7-1", "sequence": { "sequence": "MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPGRRPHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSRVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFKLSPEAAIKPNFTVRDFRNNTAGIETQRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIIILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCLPRQRPPVEDNTDIRDFINQRLQENDMDPAAPPYDSLATYAYEGNGSAADSLSSIESLTTEADQDYNYLTDWGPRFKVLADMFGEEESYNPDKVT", "length": 794, "header": "tr|F1SRL7-1|F1SRL7_PIG Isoform 1 of Cadherin-12 OS=Sus scrofa OX=9823 GN=CDH12 PE=4 SV=3 CANONICAL=F1SRL7-1" }, "locus": { "chromosome": "16", "start_pos": 10263375, "end_pos": 9985961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044529.2", "url": "https://www.ensembl.org/id/ENSSSCT00000044529.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047079.1", "url": "https://www.ensembl.org/id/ENSSSCP00000047079.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TJM2", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TJM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523408", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523408", "resource": "KEGG Pathway" }, { "id": "R-SSC-418990", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418990", "resource": "Reactome", "description": "Adherens junctions interactions" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M8P8-1", "protein_name": "Cadherin-12", "gene_name": "Cdh12", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLTRNSLCLFLWILFDGGLLTPLQPQPQPQQTSAAEPKENVIHLSGRRSHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYVASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGKNAEIEYNIVPGDGGNLFDIVTDEDTQEGIIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGNSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSKVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFRLSPEAAIKPNFTVHDFRNNTAGIETRRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIVILLAIVVLYVALRRQRKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEENKIRRDIKPDSLCFPRQRPHVEDNTDIRDFIHQRLQENDADPAAPPYDSLATYAYEGNGSVAESLSSIDSLTTEADQDYDYLTDWGPRFKVLADMFGEEESHNPDNVT", "length": 796 }, "evidence": [ { "id": "F1SRL7", "url": "https://omabrowser.org/oma/group/F1SRL7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1C235-1", "protein_name": "Cadherin-12", "gene_name": "CDH12", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLTRNCLSLLLWVLFDGGLLTPLHPQPQQTLEAEPRENVVPVPGRRSSAQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGVGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDVDTKKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTTVNITLTDVNDNPPRFPKSIFHLKVPESSHVGSAIGRIRAVDPDFGKNAEIEYNIVPGDGGNLFDITTDENTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSVGPFKDTATVKINVLDMDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDAGSSSVRYFIDWKNDVDSYFTIDANEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSKVNVIINVLDVNEFPPEISVPYETSVCENAKSGQVIQTVTAADKDLSPAGQRFSFRLSPEASNKPNFTVHDYRNNTAGIETRRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIVILLVIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKMRRDIKPDTLRFPRQRPPVEDNTDIRDFINQRLQENDVDPAAPPYDSLATYAYEGNGSVAESLSSIESLTTEADQDYDYLSDWGPRFKILADMFGEEESYNPDKVT", "length": 794 }, "evidence": [ { "id": "F1SRL7", "url": "https://omabrowser.org/oma/group/F1SRL7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1M1A2-1", "protein_name": "Cadherin-12", "gene_name": "Cdh12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLTRNSLYLLLWILFDGGLLTPLQPQPQQTLATEPKDNVIHLLGRRSHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYVASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPVGSAIGRIRAVDPDFGKNAEIEYNIVPGDGGNLFDIVTDEDTQEGIIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGTEGTIATNELLDRENTAQYNFSIIASKVSNPSLTSKVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVGAVDRDLSPAGQQFSFRLAPEAVIKPNFTVHDFRNNTAGIETRRNGYSRRQQELYFLPIVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIVILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEENKIRRDIKPDSFCLPRQRPQVEDNTDIRDFIHQRLQENDADPAAPPYDSLATYAYEGNGSVAESLSSIDSLTSEADQDYDYLSDWGPRFKVLADMFGEEESYNPDNVT", "length": 794 }, "evidence": [ { "id": "F1SRL7", "url": "https://omabrowser.org/oma/group/F1SRL7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1N7M2-1", "protein_name": "Cadherin-12", "gene_name": "CDH12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATELRENVIHLPGQRSHFHRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYIASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPVGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNVHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYLIDWKSDGDSYFTIDATEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSRVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFKLSPEAAIKPNFTVRDFRNNTAGIETRRNGYSRRQQELYFLPIVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIVILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEDNKIRRDIKPDSLCLPRQRPPVEDNTDIRDFINQRLQENDVDPIAPPYDSLATYAYEGSGSVADSLSSIESLTTEADQDYNYLTDWGPRFKVLADMFGEEESYNPDKVT", "length": 794 }, "evidence": [ { "id": "F1SRL7", "url": "https://omabrowser.org/oma/group/F1SRL7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P55289-1", "protein_name": "Cadherin-12", "gene_name": "CDH12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTRNCLSLLLWVLFDGGLLTPLQPQPQQTLATEPRENVIHLPGQRSHFQRVKRGWVWNQFFVLEEYVGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYVATVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTIVNITLTDVNDNPPRFPKSIFHLKVPESSPIGSAIGRIRAVDPDFGQNAEIEYNIVPGDGGNLFDIVTDEDTQEGVIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGDSYFTIDGNEGTIATNELLDRESTAQYNFSIIASKVSNPLLTSKVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVSAADRDLSPAGQQFSFRLSPEAAIKPNFTVRDFRNNTAGIETRRNGYSRRQQELYFLPVVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCIVILLAIVVLYVALRRQKKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEENKIRRDIKPDSLCLPRQRPPMEDNTDIRDFIHQRLQENDVDPTAPPYDSLATYAYEGSGSVAESLSSIDSLTTEADQDYDYLTDWGPRFKVLADMFGEEESYNPDKVT", "length": 794 }, "evidence": [ { "id": "F1SRL7", "url": "https://omabrowser.org/oma/group/F1SRL7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5RJH3-1", "protein_name": "Cadherin-12", "gene_name": "Cdh12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLTRNSLYLLLWILFDGGLLTPLQPQPQQTLATEPKENVIHLSGRRSHFQRVKRGWVWNQFFVLEEYMGSEPQYVGKLHSDLDKGEGTVKYTLSGDGAGTVFTIDETTGDIHAIRSLDREEKPFYTLRAQAVDIETRKPLEPESEFIIKVQDINDNEPKFLDGPYVASVPEMSPVGAYVLQVKATDADDPTYGNSARVVYSILQGQPYFSIDPKTGVIRTALPNMDREVKEQYQVLIQAKDMGGQLGGLAGTTVVNITLTDVNDNPPRFPKSIFHLKVPESSPVGSAIGRIRAVDPDFGKNAEIEYNIVPGDGGNLFDIVTDEDTQEGIIKLKKPLDFETKKAYTFKVEASNLHLDHRFHSAGPFKDTATVKISVLDVDEPPVFSKPLYTMEVYEDTPVGTIIGAVTAQDLDVGSSAVRYFIDWKSDGESYFTIDGTEGTIATNELLDRENMAQYNFSIIASKVSNPLLTSKVNILINVLDVNEFPPEISVPYETAVCENAKPGQIIQIVGAVDRDLSPAGQQFSFRLAPEAVIKPNFTVHDFRNNTAGIETRRNGYSRRQQELYFLPIVIEDSSYPVQSSTNTMTIRVCRCDSDGTILSCNVEAIFLPVGLSTGALIAILLCMVILLAIVVLYVALRRQRKKDTLMTSKEDIRDNVIHYDDEGGGEEDTQAFDIGALRNPKVIEENKIRRDIKPDSLCLSRQRPQVEDNTDIRDFIHRRLQENDADPAAPPYDSLATYAYEGNGSVAESLSSIDSLTTEADQDYDYLSDWGPRFKVLADMFGEEESYNPDNVT", "length": 794 }, "evidence": [ { "id": "F1SRL7", "url": "https://omabrowser.org/oma/group/F1SRL7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "catenin complex", "id": "GO:0016342", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016342", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "beta-catenin binding", "id": "GO:0008013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008013", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "cell morphogenesis", "id": "GO:0000902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000902", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "cell-cell junction assembly", "id": "GO:0007043", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007043", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "adherens junction organization", "id": "GO:0034332", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034332", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules", "id": "GO:0016339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016339", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" }, { "name": "cell-cell adhesion mediated by cadherin", "id": "GO:0044331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044331", "evidence": [ { "database": "UniProtKB", "id": "F1SRL7", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 456, "end_pos": 458, "annotation": "n_glycosylation_sequon" }, { "start_pos": 537, "end_pos": 539, "annotation": "n_glycosylation_sequon" }, { "start_pos": 545, "end_pos": 547, "annotation": "n_glycosylation_sequon" }, { "start_pos": 744, "end_pos": 746, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRL7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRL7" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 80, "end_pos": 160, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 256, "end_pos": 258 }, { "start_pos": 456, "end_pos": 458 }, { "start_pos": 537, "end_pos": 539 }, { "start_pos": 545, "end_pos": 547 }, { "start_pos": 744, "end_pos": 746 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5K3-1", "uniprot_ac": "I3L5K3", "uniprot_id": "I3L5K3_PIG", "mass": { "chemical_mass": 33245.0, "monoisotopic_mass": 33245.0 }, "refseq": {}, "gene_names": [ { "name": "HSD17B11", "type": "recommended", "evidence": [ { "id": "I3L5K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5K3" } ] } ], "protein_names": [ { "name": "Estradiol 17-beta-dehydrogenase 11", "type": "recommended", "evidence": [ { "id": "I3L5K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5K3/entry#names_and_taxonomy" } ] }, { "name": "1.1.1.62", "type": "synonym", "evidence": [ { "id": "I3L5K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5K3/entry#names_and_taxonomy" } ] }, { "name": "17-beta-hydroxysteroid dehydrogenase 11", "type": "synonym", "evidence": [ { "id": "I3L5K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5K3/entry#names_and_taxonomy" } ] }, { "name": "Dehydrogenase/reductase SDR family member 8", "type": "synonym", "evidence": [ { "id": "I3L5K3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5K3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5K3", "url": "https://www.uniprot.org/uniprotkb/I3L5K3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HSD17B11", "url": "https://www.uniprot.org/uniprotkb/I3L5K3", "locus": { "chromosome": "8", "start_pos": 131541108, "end_pos": 131472582, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009225", "url": "https://www.ensembl.org/id/ENSSSCG00000009225" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009225", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009225", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05339", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05339", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "I3L5K3", "url": "https://www.orthodb.org/?gene=I3L5K3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24322", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24322", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24322:SF489", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24322:SF489", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-193144", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193144", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "24612", "url": "https://www.rhea-db.org/rhea/24612", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "24616", "url": "https://www.rhea-db.org/rhea/24616", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A4X1U1U3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1U3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U1U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1U3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKR5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QKR5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QKR5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5K3", "url": "https://www.uniprot.org/uniprotkb/I3L5K3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5K3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5K3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRFFLDVLLLLPLLLIFTLESLLKLFIPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRLINGILTEQKMIFIPSSINFLTVLERILPERFLAVLKRKINVRFDAVIGYKVNEQ", "length": 300, "header": "tr|I3L5K3-1|I3L5K3_PIG Isoform 1 of Estradiol 17-beta-dehydrogenase 11 OS=Sus scrofa OX=9823 GN=HSD17B11 PE=1 SV=2 CANONICAL=I3L5K3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U1U3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5K3/entry#A0A4X1U1U3-1", "sequence": { "sequence": "MRFFLDVLLLLPLLLIFTLESLLKLFIPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVVDCSDREDIYSSAKKTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRLINGILTEQKMIFIPSSINFLTVLERILPERFLAVLKRKINVRFDAVIGYKVNEQ", "length": 256, "header": "tr|A0A4X1U1U3-1|I3L5K3_PIG Computationally mapped isoform of Estradiol 17-beta-dehydrogenase 11 OS=Sus scrofa OX=9823 GN=HSD17B11 PE=1 SV=1 CANONICAL=I3L5K3-1" }, "locus": { "chromosome": "8", "start_pos": 131540485, "end_pos": 131502808, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083699.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083699.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065760.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065760.1" } ] } }, { "isoform_ac": "A0A5G2QKR5-1", "url": "https://www.uniprot.org/uniprotkb/I3L5K3/entry#A0A5G2QKR5-1", "sequence": { "sequence": "MRFFLDVLLLLPLLLIFTLESLLKLFIPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRLINGILTEQKMIFIPSSINFLTVLER", "length": 271, "header": "tr|A0A5G2QKR5-1|I3L5K3_PIG Computationally mapped isoform of Estradiol 17-beta-dehydrogenase 11 OS=Sus scrofa OX=9823 GN=HSD17B11 PE=1 SV=1 CANONICAL=I3L5K3-1" }, "locus": { "chromosome": "8", "start_pos": 131537387, "end_pos": 131502808, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075913.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075913.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065123.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065123.1" } ] } }, { "isoform_ac": "I3L5K3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5K3/entry#I3L5K3-1", "sequence": { "sequence": "MRFFLDVLLLLPLLLIFTLESLLKLFIPKKRKSVTGEIVLITGAGHGLGRLTAFEFAKLKCKLVLWDINKHGLEETADECKRLGSKAHAFVVDCSDREDIYSSAKKVKAEVGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNILAHFWTTKAFLPAMMKNNHGHIVTVASAAGHAGIPFLLAYCSSKFAAVGFHKALTEELAALKRTGVKTTCLCPNFINTGFIKNPSTSLGPLLEPEEVVNRLINGILTEQKMIFIPSSINFLTVLERILPERFLAVLKRKINVRFDAVIGYKVNEQ", "length": 300, "header": "tr|I3L5K3-1|I3L5K3_PIG Isoform 1 of Estradiol 17-beta-dehydrogenase 11 OS=Sus scrofa OX=9823 GN=HSD17B11 PE=1 SV=2 CANONICAL=I3L5K3-1" }, "locus": { "chromosome": "8", "start_pos": 131540485, "end_pos": 131502808, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028706.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028706.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019302.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019302.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U1U3", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U1U3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-193144", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-193144", "resource": "Reactome", "description": "Estrogen biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "I3L5K3", "url": "https://www.uniprot.org/uniprotkb/I3L5K3" } ], "pmid": "" }, { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "I3L5K3", "url": "https://www.uniprot.org/uniprotkb/I3L5K3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "steroid biosynthetic process", "id": "GO:0006694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006694", "evidence": [ { "database": "UniProtKB", "id": "I3L5K3", "url": "https://www.uniprot.org/uniprotkb/I3L5K3" } ], "pmid": "" }, { "name": "androgen catabolic process", "id": "GO:0006710", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006710", "evidence": [ { "database": "UniProtKB", "id": "I3L5K3", "url": "https://www.uniprot.org/uniprotkb/I3L5K3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "estradiol 17-beta-dehydrogenase [NAD(P)+] activity", "id": "GO:0004303", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004303", "evidence": [ { "database": "UniProtKB", "id": "I3L5K3", "url": "https://www.uniprot.org/uniprotkb/I3L5K3" } ], "pmid": "" }, { "name": "steroid dehydrogenase activity", "id": "GO:0016229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016229", "evidence": [ { "database": "UniProtKB", "id": "I3L5K3", "url": "https://www.uniprot.org/uniprotkb/I3L5K3" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor", "id": "GO:0016616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016616", "evidence": [ { "database": "UniProtKB", "id": "I3L5K3", "url": "https://www.uniprot.org/uniprotkb/I3L5K3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "24612", "name": "", "equation": "17beta-estradiol + NAD(+) = estrone + NADH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "24612", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/24612" } ] }, { "id": "24616", "name": "", "equation": "17beta-estradiol + NADP(+) = estrone + NADPH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "24616", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/24616" } ] }, { "id": "R-SSC-5693390", "name": "HSD17B11 dehydrogenates EST17b to E1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5693390", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693390" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L7J1-1", "uniprot_ac": "I3L7J1", "uniprot_id": "I3L7J1_PIG", "mass": { "chemical_mass": 84807.0, "monoisotopic_mass": 84807.0 }, "refseq": {}, "gene_names": [ { "name": "TAPT1", "type": "recommended", "evidence": [ { "id": "I3L7J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7J1" } ] } ], "protein_names": [ { "name": "Transmembrane anterior posterior transformation 1", "type": "synonym", "evidence": [ { "id": "I3L7J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7J1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L7J1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TAPT1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1", "locus": { "chromosome": "8", "start_pos": 11365432, "end_pos": 11416488, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021828", "url": "https://www.ensembl.org/id/ENSSSCG00000021828" } ] } } ], "crossref": [ { "id": "I3L7J1", "url": "https://alphafold.ebi.ac.uk/entry/I3L7J1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021828", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021828", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100626638", "url": "https://www.ncbi.nlm.nih.gov/gene/100626638", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008010", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008010", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TIMLIRV", "url": "https://omabrowser.org/oma/group/TIMLIRV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13317", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13317", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13317:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13317:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05346", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05346", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1VCD7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1VCD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCD7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7J1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7J1-1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRTWSPSSGPMGPGLAGVGDLEPGPQRRGRASDAKTGRAAPAHSGHRACKRSPVRATGHLADGGQRAQRPPPRGSSADPPPVAAATLGPLPPGPRPEPRRRSLSPAARPGGMESGAGSRAADPGAAREAIARHGEGRKKMAAAVAAAAAAAASHAPLTPMARAGRRAADGGGSGSGSGGGPGSGEGRGEAGRGPAGGGGRAGGWREAVGTVCCARNMAGVGDAAAPGEGGGGGVDGPERDGRGEAEQPGGGGHGPPPAPQHTETLGFYESDRRRERRRSRAELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMFFGIFLCLDAFLYVFTLLPLRIFLALFRLFTLPCYGLRDRRLLQPAQVCDILKGVILVMCYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKILNSIVLLGKSCQYVKEAKMEEKLFNPPPASAPGKPSSKSQSKSKSSQEESLSASVTSQPSHQKENVLPLLVTSTSDQFLTTPDGDEKDVTQENSELKHRSSKKDLLEIDRFTICGNRID", "length": 779, "header": "tr|I3L7J1-1|I3L7J1_PIG Isoform 1 of Transmembrane anterior posterior transformation 1 OS=Sus scrofa OX=9823 GN=TAPT1 PE=1 SV=3 CANONICAL=I3L7J1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1VCD7-1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1/entry#A0A4X1VCD7-1", "sequence": { "sequence": "MSSLSTCQELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMFFGIFLCLDAFLYVFTLLPLRIFLALFRLFTLPCYGLRDRRLLQPAQVCDILKGVILVMCYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKILNSIVLLGKSCQYVKEAKMEEKLFNPPPASAPGKPSSKSQSKSKSSQEESLSASVTSQPSHQKENVLPLLVTSTSDQFLTTPDGDEKDVTQENSELKHRSSKKDLLEIDRFTICGNRID", "length": 505, "header": "tr|A0A4X1VCD7-1|I3L7J1_PIG Computationally mapped isoform of Transmembrane anterior posterior transformation 1 OS=Sus scrofa OX=9823 GN=TAPT1 PE=1 SV=1 CANONICAL=I3L7J1-1" }, "locus": { "chromosome": "8", "start_pos": 11415031, "end_pos": 11367450, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046792.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046792.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000039131.1", "url": "https://www.ensembl.org/id/ENSSSCP00000039131.1" } ] } }, { "isoform_ac": "I3L7J1-1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1/entry#I3L7J1-1", "sequence": { "sequence": "MQRTWSPSSGPMGPGLAGVGDLEPGPQRRGRASDAKTGRAAPAHSGHRACKRSPVRATGHLADGGQRAQRPPPRGSSADPPPVAAATLGPLPPGPRPEPRRRSLSPAARPGGMESGAGSRAADPGAAREAIARHGEGRKKMAAAVAAAAAAAASHAPLTPMARAGRRAADGGGSGSGSGGGPGSGEGRGEAGRGPAGGGGRAGGWREAVGTVCCARNMAGVGDAAAPGEGGGGGVDGPERDGRGEAEQPGGGGHGPPPAPQHTETLGFYESDRRRERRRSRAELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMFFGIFLCLDAFLYVFTLLPLRIFLALFRLFTLPCYGLRDRRLLQPAQVCDILKGVILVMCYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKILNSIVLLGKSCQYVKEAKMEEKLFNPPPASAPGKPSSKSQSKSKSSQEESLSASVTSQPSHQKENVLPLLVTSTSDQFLTTPDGDEKDVTQENSELKHRSSKKDLLEIDRFTICGNRID", "length": 779, "header": "tr|I3L7J1-1|I3L7J1_PIG Isoform 1 of Transmembrane anterior posterior transformation 1 OS=Sus scrofa OX=9823 GN=TAPT1 PE=1 SV=3 CANONICAL=I3L7J1-1" }, "locus": { "chromosome": "8", "start_pos": 11416289, "end_pos": 11367450, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030490.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030490.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019996.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019996.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1VCD7", "url": "https://www.uniprot.org/uniprotkb/A0A4X1VCD7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6A632-1", "protein_name": "Transmembrane anterior posterior transformation 1", "gene_name": "Tapt1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIINMQERCSQGSRATGSAPAGATELEPGPSRRAAKARRVAPAHSGHRTGTRGSGRTESHAEPRRRPPSPTARPGDMEPGAAPRSAEPAARHGDGRKKMAAAVAAATAASHAPLTPMARAGRRTTDGGCPGSGEGRGEAARGPAGGGGRAGGWREVAGTVCGFRNMAGVCDAAAPGEGGGGGADGPERTGRGEAEQPGGGGHGPAPQHTETLGFYESDRRREKRRGRAELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCMRIPRELEKLMFFGIFLCLDAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKILNSIVLLGKSCQYVKEAKMEEKLFNPPPASTPAKPSNKSQSKCKSSQGLSTEENLSASITSQPVHQKENVIPLLVTSNSDQFLTTPDGDEKDITQENSELKHRSSKKDLLEIDRFTICGNRID", "length": 729 }, "evidence": [ { "id": "I3L7J1", "url": "https://omabrowser.org/oma/group/I3L7J1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M3AGX4-1", "protein_name": "Transmembrane anterior posterior transformation protein 1 homolog isoform X1", "gene_name": "tapt1a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADSLAVGTSDEKDPENEDHKGVKCSWAPERMSEKTNILTTMTETLGCYENPAVKEEQMEHSDVDEPEDPSLLRFMCAELTRGYFLEHNEAKYTERRERVYTCMRIPRELERLMIFGICLCLDAFLYVFTLLPLRTLLAFLRLLTIPCCGLGANVCPYCRRSSGSRFLQPAQVCDLLKGLIMVLCYSMMHYVDYAMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKSRKRAHIGVIPHFFMAVFYVFLHSILIMVQASTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNSDHLWVLLPDVFMVIMSEVAVDIVKHAFITKFNDITADVYSEYKASLAFELVSSRQQNAYTDYSDSVARRMGFIPLPLAVLLIRVVMSSVKIQGALSSVCLLLFYLGLITLKVLNSIIILGKSCRYVKEAKMEGKLFERPNPQTPKQTPKKTNPARSPPPAAEPKMHRPTASITKQPTPRAKLFPSAPTPEPKETVDPPPDPPPPNPEEIISADAQQSTELKHRTSKKDLLEIDRFTICGNRIG", "length": 588 }, "evidence": [ { "id": "I3L7J1", "url": "https://omabrowser.org/oma/group/I3L7J1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0Y9S2-1", "protein_name": "Transmembrane anterior posterior transformation 1", "gene_name": "TAPT1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGVSDAAAPGSGGEGRRGGGGSSPEQLQQDGCRGEPKTLWGSSELRPPPAGPGQPSPHQRTETLGFYESDRGRKKKRGLSDLSLLRFISAELTRGYFLEHNEAKYTERRERVYTCMRIPKELEKLMFFGIFLCLDAFLYIFTLLPLRVFLAMFRFITLPCYGLRSHRGLTESDRRLLQPAQVCDILKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVVASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVSRRMGFIPLPLAVLLMRVVTSSIKVQGVLAYVCVVLFYCGLISLKVLNSIVLLGKSCQYVKEAKMEEKLFNPVPSASAGKPAGKPQSMFKSTHGFSTDENGSTSVTNQPVHQKDSPPSLLVTSNSDQFLTTPDGEEKDISQDSSELKHRSSKKDLLEIDRFTICGNRID", "length": 590 }, "evidence": [ { "id": "I3L7J1", "url": "https://omabrowser.org/oma/group/I3L7J1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q4VBD2-1", "protein_name": "Transmembrane anterior posterior transformation protein 1", "gene_name": "Tapt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGVCDAAAPGEGGGGGADGPERTGRGEAEQPGGGGHGPAPQHTETLGFYESDRRREKRRGRAELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCMRIPRELEKLMFFGIFLCLDAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKILNSIVLLGKSCQYVKEAKMEEKLFNPPPASTPGKPSSKSQSKGKPSQGLSTEENLSASVTSQPGHQKENVIPLLVTSNSDQFLTTPDGDEKDITQENSELKHRSSKKDLLEIDRFTICGNRID", "length": 564 }, "evidence": [ { "id": "I3L7J1", "url": "https://omabrowser.org/oma/group/I3L7J1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6NXT6-1", "protein_name": "Transmembrane anterior posterior transformation protein 1 homolog", "gene_name": "TAPT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRERRRGRTELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCLDAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVDYSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIPHFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLFQMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFITKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISLKVLNSIVLLGKSCQYVKEAKMEEKLSNPPATCTPGKPSSKSQNKCKPSQGLSTEENLSASITKQPIHQKENIIPLLVTSNSDQFLTTPDGDEKDITQDNSELKHRSSKKDLLEIDRFTICGNRID", "length": 567 }, "evidence": [ { "id": "I3L7J1", "url": "https://omabrowser.org/oma/group/I3L7J1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "I3L7J1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "I3L7J1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "I3L7J1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "I3L7J1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "ossification", "id": "GO:0001503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001503", "evidence": [ { "database": "UniProtKB", "id": "I3L7J1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1" } ], "pmid": "" }, { "name": "cartilage development", "id": "GO:0051216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051216", "evidence": [ { "database": "UniProtKB", "id": "I3L7J1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1" } ], "pmid": "" }, { "name": "positive regulation of cilium assembly", "id": "GO:0045724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045724", "evidence": [ { "database": "UniProtKB", "id": "I3L7J1", "url": "https://www.uniprot.org/uniprotkb/I3L7J1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 487, "end_pos": 489, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L7J1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 779, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L7J1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L7J1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 487, "end_pos": 489 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5V3-1", "uniprot_ac": "F2Z5V3", "uniprot_id": "F2Z5V3_PIG", "mass": { "chemical_mass": 14585.0, "monoisotopic_mass": 14585.0 }, "refseq": {}, "gene_names": [ { "name": "SNU13", "type": "recommended", "evidence": [ { "id": "F2Z5V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ] } ], "protein_names": [ { "name": "NHP2-like protein 1", "type": "recommended", "evidence": [ { "id": "F2Z5V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Common component of the spliceosome and rRNA processing machinery.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4V1#function" }, { "database": "UniProtKB", "id": "RU366039", "url": "https://www.uniprot.org/uniprotkb/RU366039#function" }, { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3#function" } ] }, { "annotation": "Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome. Involved in pre-mRNA splicing as component of the spliceosome. Binds to the 5'-stem-loop of U4 snRNA and thereby contributes to spliceosome assembly. The protein undergoes a conformational change upon RNA-binding. Core component of box C/D small nucleolar ribonucleoprotein (snoRNP) complexes that function in methylation of multiple sites on ribosomal RNAs (rRNAs) and messenger RNAs (mRNAs).", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4V1#function" }, { "database": "UniProtKB", "id": "ARBA00058076", "url": "https://www.uniprot.org/uniprotkb/ARBA00058076#function" }, { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SNU13", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3", "locus": { "chromosome": "5", "start_pos": 6900022, "end_pos": 6885067, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000058", "url": "https://www.ensembl.org/id/ENSSSCG00000000058" } ] } } ], "crossref": [ { "id": "F2Z5V3", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5V3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000058", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000058", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21104", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21104", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155420", "url": "https://www.ncbi.nlm.nih.gov/gene/100155420", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004037", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004037", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050257", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050257", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155420", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155420", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LACEDKG", "url": "https://omabrowser.org/oma/group/LACEDKG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1W4V1", "url": "https://www.orthodb.org/?gene=A0A4X1W4V1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1W4V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4V1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1W4V1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4V1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5V3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSVQTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV", "length": 132, "header": "tr|F2Z5V3-1|F2Z5V3_PIG Isoform 1 of NHP2-like protein 1 OS=Sus scrofa OX=9823 GN=SNU13 PE=3 SV=2 CANONICAL=F2Z5V3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1W4V1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3/entry#A0A4X1W4V1-1", "sequence": { "sequence": "MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV", "length": 128, "header": "tr|A0A4X1W4V1-1|F2Z5V3_PIG Computationally mapped isoform of NHP2-like protein 1 OS=Sus scrofa OX=9823 GN=SNU13 PE=3 SV=1 CANONICAL=F2Z5V3-1" }, "locus": { "chromosome": "5", "start_pos": 6899073, "end_pos": 6891133, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038079.1", "url": "https://www.ensembl.org/id/ENSSSCT00000038079.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037149.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037149.1" } ] } }, { "isoform_ac": "F2Z5V3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3/entry#F2Z5V3-1", "sequence": { "sequence": "MPSVQTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV", "length": 132, "header": "tr|F2Z5V3-1|F2Z5V3_PIG Isoform 1 of NHP2-like protein 1 OS=Sus scrofa OX=9823 GN=SNU13 PE=3 SV=2 CANONICAL=F2Z5V3-1" }, "locus": { "chromosome": "5", "start_pos": 6899073, "end_pos": 6885067, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000064.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000064.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000064.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000064.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1W4V1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1W4V1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155420", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155420", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P55770-1", "protein_name": "NHP2-like protein 1", "gene_name": "Snu13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV", "length": 128 }, "evidence": [ { "id": "F2Z5V3", "url": "https://omabrowser.org/oma/group/F2Z5V3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9U3Z7-1", "protein_name": "NHP2-like protein 1 homolog", "gene_name": "hoip", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTEEVNPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEPIEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIERLLV", "length": 127 }, "evidence": [ { "id": "F2Z5V3", "url": "https://omabrowser.org/oma/group/F2Z5V3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "box C/D methylation guide snoRNP complex", "id": "GO:0031428", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031428", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "U4/U6 x U5 tri-snRNP complex", "id": "GO:0046540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046540", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "dense fibrillar component", "id": "GO:0001651", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001651", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "U4atac snRNP", "id": "GO:0005690", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005690", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "U2-type precatalytic spliceosome", "id": "GO:0071005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071005", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "ribosome biogenesis", "id": "GO:0042254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042254", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "ribosomal small subunit biogenesis", "id": "GO:0042274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042274", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "box C/D sno(s)RNA binding", "id": "GO:0034512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034512", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "U4 snRNA binding", "id": "GO:0030621", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030621", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "ATPase binding", "id": "GO:0051117", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051117", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "U4atac snRNA binding", "id": "GO:0030622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030622", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" }, { "name": "U3 snoRNA binding", "id": "GO:0034511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034511", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V3", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5V3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 132, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5V3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5V3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5V3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5V3" }, { "id": "PF01248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01248" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ribosomal protein eL8/eL30/eS12/Gadd45", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 115, "start_aa": "Lys", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSM3-1", "uniprot_ac": "F1SSM3", "uniprot_id": "F1SSM3_PIG", "mass": { "chemical_mass": 32422.0, "monoisotopic_mass": 32422.0 }, "refseq": { "ac": "XP_003121872", "name": "homeobox protein OTX2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121872" }, "gene_names": [ { "name": "OTX2", "type": "recommended", "evidence": [ { "id": "F1SSM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ] }, { "name": "OTX2", "type": "synonym", "evidence": [ { "id": "XP_003121872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121872" } ] } ], "protein_names": [ { "name": "Orthodenticle homeobox 2", "type": "synonym", "evidence": [ { "id": "F1SSM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM3/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein OTX2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003121872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121872" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OTX2", "url": "https://www.uniprot.org/uniprotkb/F1SSM3", "locus": { "chromosome": "1", "start_pos": 186028579, "end_pos": 186038229, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005063", "url": "https://www.ensembl.org/id/ENSSSCG00000005063" } ] } } ], "crossref": [ { "id": "F1SSM3", "url": "https://alphafold.ebi.ac.uk/entry/F1SSM3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005063", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005063", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512643", "url": "https://www.ncbi.nlm.nih.gov/gene/100512643", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003022", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003022", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512643", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512643", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QTNISMM", "url": "https://omabrowser.org/oma/group/QTNISMM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1WD11", "url": "https://www.orthodb.org/?gene=A0A4X1WD11", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SSM3", "url": "https://www.orthodb.org/?gene=F1SSM3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45793", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45793", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45793:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45793:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03529", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03529", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003121872", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121872", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1WD11", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1WD11-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1WD11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBS7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSM3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREVSSESGTSGQFTPPSSTSVPAISSSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGTTLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQTSSWKFQVL", "length": 297, "header": "tr|F1SSM3-1|F1SSM3_PIG Isoform 1 of Orthodenticle homeobox 2 OS=Sus scrofa OX=9823 GN=OTX2 PE=1 SV=2 CANONICAL=F1SSM3-1" }, "isoforms": [ { "isoform_ac": "A0A4X1WD11-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM3/entry#A0A4X1WD11-1", "sequence": { "sequence": "MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREVSSESGTSGQFTPPSSTSVPAISSSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGTTLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQTSSWKFQVL", "length": 289, "header": "tr|A0A4X1WD11-1|F1SSM3_PIG Computationally mapped isoform of Orthodenticle homeobox 2 OS=Sus scrofa OX=9823 GN=OTX2 PE=1 SV=1 CANONICAL=F1SSM3-1" }, "locus": { "chromosome": "1", "start_pos": 186033257, "end_pos": 186029593, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036920.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036920.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057237.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057237.1" } ] } }, { "isoform_ac": "A0A8W4FBS7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM3/entry#A0A8W4FBS7-1", "sequence": { "sequence": "MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQTSSWKFQVL", "length": 168, "header": "tr|A0A8W4FBS7-1|F1SSM3_PIG Computationally mapped isoform of Orthodenticle homeobox 2 OS=Sus scrofa OX=9823 GN=OTX2 PE=1 SV=1 CANONICAL=F1SSM3-1" }, "locus": { "chromosome": "1", "start_pos": 186033257, "end_pos": 186029593, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104008.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104008.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075751.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075751.1" } ] } }, { "isoform_ac": "F1SSM3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM3/entry#F1SSM3-1", "sequence": { "sequence": "MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREVSSESGTSGQFTPPSSTSVPAISSSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGTTLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQTSSWKFQVL", "length": 297, "header": "tr|F1SSM3-1|F1SSM3_PIG Isoform 1 of Orthodenticle homeobox 2 OS=Sus scrofa OX=9823 GN=OTX2 PE=1 SV=2 CANONICAL=F1SSM3-1" }, "locus": { "chromosome": "1", "start_pos": 186033257, "end_pos": 186029593, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005580.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005580.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005442.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005442.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FBS7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBS7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512643", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512643", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2M039-1", "protein_name": "Homeobox protein OTX2 isoform X1", "gene_name": "Otx2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPGPWASCPAATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQTSSWKFQVL", "length": 297 }, "evidence": [ { "id": "F1SSM3", "url": "https://omabrowser.org/oma/group/F1SSM3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BNP1-1", "protein_name": "Orthodenticle homeobox 2", "gene_name": "OTX2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREVSSESGTSGQFTPPSSTSVPAISSSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGTTLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQTSSWKFQVL", "length": 289 }, "evidence": [ { "id": "F1SSM3", "url": "https://omabrowser.org/oma/group/F1SSM3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P32243-1", "protein_name": "Homeobox protein OTX2", "gene_name": "OTX2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQTSSWKFQVL", "length": 289 }, "evidence": [ { "id": "F1SSM3", "url": "https://omabrowser.org/oma/group/F1SSM3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P80206-1", "protein_name": "Homeobox protein OTX2", "gene_name": "Otx2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKSSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQTSSWKFQVL", "length": 289 }, "evidence": [ { "id": "F1SSM3", "url": "https://omabrowser.org/oma/group/F1SSM3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q64201-1", "protein_name": "Homeobox protein OTX2", "gene_name": "Otx2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLPGPGATLSPMGTNAVTSHLNQSPASLSTQGYGAS", "length": 70 }, "evidence": [ { "id": "F1SSM3", "url": "https://omabrowser.org/oma/group/F1SSM3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91981-1", "protein_name": "Homeobox protein OTX2", "gene_name": "otx2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSYLKQPPYTVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKSSPAREASSESGASGQFTPPSSTSVPAISTTTAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHHQLTGPGSTLSPMSSNAVTSHLNQSPASLPTQGYGASGLGFNSTADCLDYKDQASSWKLNFNADCLDYKDQTSSWKFQVL", "length": 289 }, "evidence": [ { "id": "F1SSM3", "url": "https://omabrowser.org/oma/group/F1SSM3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" }, { "name": "growth cone", "id": "GO:0030426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030426", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" }, { "name": "dopaminergic neuron differentiation", "id": "GO:0071542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071542", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" }, { "name": "protein-containing complex assembly", "id": "GO:0065003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0065003", "evidence": [ { "database": "UniProtKB", "id": "F1SSM3", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSM3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 297, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSM3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSM3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSM3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM3" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 104, "start_aa": "Arg", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 240, "end_pos": 242 }, { "start_pos": 259, "end_pos": 261 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5N6-1", "uniprot_ac": "F2Z5N6", "uniprot_id": "F2Z5N6_PIG", "mass": { "chemical_mass": 35144.0, "monoisotopic_mass": 35144.0 }, "refseq": { "ac": "NP_001231333", "name": "serine/threonine-protein phosphatase 6 catalytic subunit", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231333" }, "gene_names": [ { "name": "PPP6C", "type": "recommended", "evidence": [ { "id": "F2Z5N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6" } ] }, { "name": "PPP6C", "type": "synonym", "evidence": [ { "id": "NP_001231333", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231333" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein phosphatase", "type": "recommended", "evidence": [ { "id": "F2Z5N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.16", "type": "synonym", "evidence": [ { "id": "F2Z5N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein phosphatase 6 catalytic subunit", "type": "synonym", "evidence": [ { "id": "NP_001231333", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231333" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5N6", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP6C", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6", "locus": { "chromosome": "1", "start_pos": 265870477, "end_pos": 265898124, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005600", "url": "https://www.ensembl.org/id/ENSSSCG00000005600" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005600", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005600", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07415", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07415", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153256", "url": "https://www.ncbi.nlm.nih.gov/gene/100153256", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004843", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004843", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153256", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153256", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MCLKVKY", "url": "https://omabrowser.org/oma/group/MCLKVKY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5N6", "url": "https://www.orthodb.org/?gene=F2Z5N6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45619", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45619", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00149", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00149", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-171319", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171319", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231333", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231333", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "47004", "url": "https://www.rhea-db.org/rhea/47004", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QHW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5N6", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5N6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPLDLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYFL", "length": 305, "header": "tr|F2Z5N6-1|F2Z5N6_PIG Isoform 1 of Serine/threonine-protein phosphatase OS=Sus scrofa OX=9823 GN=PPP6C PE=1 SV=1 CANONICAL=F2Z5N6-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHW7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6/entry#A0A5G2QHW7-1", "sequence": { "sequence": "MAPLDLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYFL", "length": 283, "header": "tr|A0A5G2QHW7-1|F2Z5N6_PIG Computationally mapped isoform of Serine/threonine-protein phosphatase OS=Sus scrofa OX=9823 GN=PPP6C PE=1 SV=1 CANONICAL=F2Z5N6-1" }, "locus": { "chromosome": "1", "start_pos": 265898048, "end_pos": 265873519, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068374.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068374.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063486.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063486.1" } ] } }, { "isoform_ac": "F2Z5N6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6/entry#F2Z5N6-1", "sequence": { "sequence": "MAPLDLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYFL", "length": 305, "header": "tr|F2Z5N6-1|F2Z5N6_PIG Isoform 1 of Serine/threonine-protein phosphatase OS=Sus scrofa OX=9823 GN=PPP6C PE=1 SV=1 CANONICAL=F2Z5N6-1" }, "locus": { "chromosome": "1", "start_pos": 265898048, "end_pos": 265873519, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006158.4", "url": "https://www.ensembl.org/id/ENSSSCT00000006158.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005999.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005999.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHW7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHW7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153256", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153256", "resource": "KEGG Pathway" }, { "id": "R-SSC-171319", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171319", "resource": "Reactome", "description": "Telomere Extension By Telomerase" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [ { "uniprot_canonical_ac": "O00743-1", "protein_name": "Serine/threonine-protein phosphatase 6 catalytic subunit", "gene_name": "PPP6C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPLDLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYFL", "length": 305 }, "evidence": [ { "id": "F2Z5N6", "url": "https://omabrowser.org/oma/group/F2Z5N6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P20604-1", "protein_name": "Serine/threonine-protein phosphatase PP1-1", "gene_name": "SIT4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVSRGPDEWLETIKKCQALTENEMKQLCEMVKELLMEESNIQPVQTPVTVCGDIHGQFHDLLELFRTAGGFPDDINYIFLGDYVDRGYYSLETFTLLMCLKVKYPAKITLVRGNHESRQITQVYGFYEECLNKYGSTTVWKYCCQVFDFLTLAAIIDGKILCVHGGLSPEIRMLDQIRVLSRAQEVPHEGGFSDLLWSDPDNVEAWQVSPRGAGWLFGSKVAREFNHVNGLNLIARAHQLVMEGFKYHFPEKDVVTVWSAPNYCYRCGNVASVMKVDEDLEPTFKIFSAVPDDYIRESTANHNNQRAGYFL", "length": 311 }, "evidence": [ { "id": "F2Z5N6", "url": "https://omabrowser.org/oma/group/F2Z5N6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q27884-1", "protein_name": "Serine/threonine-protein phosphatase 6 catalytic subunit", "gene_name": "PpV", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGDVDKWIEDVKKCKYLPENELKKLCEMVCDILLEETNILPVSTPVTVCGDIHGQFYDLEQLFRTGGQVPHTNYIFMGDFVDRGYYSLETFTRLLTLKARYPSRITLLRGNHETRQITKVYGFFDECFSKYGNANGWKYCCKVFDLLTIAAIIDEEVLCVHGGLSPEIITLDQIRTIDRNGEIPYKGAFCDLVWSDPEDMEYWGQSPRGAGWLFGHNVTKDFMAINNLNLICRAHQLVNEGIKYMFDGKLVTVWSAPNYCYRCGNVAAILSFETAEKRQTKIFLAVPDAERVIPKQNTTPYFL", "length": 303 }, "evidence": [ { "id": "F2Z5N6", "url": "https://omabrowser.org/oma/group/F2Z5N6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q64620-1", "protein_name": "Serine/threonine-protein phosphatase 6 catalytic subunit", "gene_name": "Ppp6c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPLDLDKYVEIARQCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYFL", "length": 305 }, "evidence": [ { "id": "F2Z5N6", "url": "https://omabrowser.org/oma/group/F2Z5N6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CQR6-1", "protein_name": "Serine/threonine-protein phosphatase 6 catalytic subunit", "gene_name": "Ppp6c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAPLDLDKYVEIARQCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHESRQITQVYGFYDECQTKYGNANAWRYCTKVFDMLTVAALIDEQILCVHGGLSPDIKTLDQIRTIERNQEIPHKGAFCDLVWSDPEDVDTWAISPRGAGWLFGAKVTNEFVHINNLKLICRAHQLVHEGYKFMFDEKLVTVWSAPNYCYRCGNIASIMVFKDVNTREPKLFRAVPDSERVIPPRTTTPYFL", "length": 305 }, "evidence": [ { "id": "F2Z5N6", "url": "https://omabrowser.org/oma/group/F2Z5N6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SX52-1", "protein_name": "Phytochrome-associated serine/threonine-protein phosphatase 1", "gene_name": "FYPP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDQWISKVKDGQHLSEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARHPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDVRTIDQIRLIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTTEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNDNMEREVKFFTETEENNQMRGPRTGVPYFL", "length": 303 }, "evidence": [ { "id": "F2Z5N6", "url": "https://omabrowser.org/oma/group/F2Z5N6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9U9A3-1", "protein_name": "Serine/threonine-protein phosphatase 6 catalytic subunit", "gene_name": "ppp6c", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNALPLDEWVETARQCKYLPENDLKKLCERVKELLLEESNVQPVRSPVTICGDIHGQFYDLLELFKTGGEVPDTNYVFMGDFVDRGYYSLETFTYLLALKARYPDKITLLRGNHESRQITQVYGFYDECQQKYGNVNAWKYCTSVFDFLTLAAIIDGKVLCVHGGLSPKVRTLDQIRIISRNLEIPHEGPFCDLMWSDPEDIEQWQPSPRGAGWLFGSKVTAEFEHINGLNLICRAHQLVQEGYRYMFDNSLVTVWSAPNYCYRCGNVASILSLNENLDRDFKIFQAVQEERNIPTRPTMQYFF", "length": 305 }, "evidence": [ { "id": "F2Z5N6", "url": "https://omabrowser.org/oma/group/F2Z5N6/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N6", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6" } ], "pmid": "" }, { "name": "protein serine/threonine phosphatase activity", "id": "GO:0004722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004722", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N6", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N6", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N6", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "G1/S transition of mitotic cell cycle", "id": "GO:0000082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000082", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N6", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6" } ], "pmid": "" }, { "name": "negative regulation of cGAS/STING signaling pathway", "id": "GO:0160049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160049", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N6", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "47004", "name": "", "equation": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47004", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47004" } ] }, { "id": "R-SSC-163096", "name": "Recruitment of Telomerase RNP to the Telomeric Chromosome End", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-163096", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163096" } ] }, { "id": "R-SSC-5694421", "name": "PP6 dephosphorylates SEC24", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5694421", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5694421" } ] }, { "id": "R-SSC-9686524", "name": "PP6-PPP6R3 dephosphorylates TERF2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9686524", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9686524" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5N6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N6" }, { "id": "PS00125", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00125" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serine/threonine specific protein phosphatases", "eco_id": "ECO_0000259", "start_pos": 110, "end_pos": 115, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SU68-1", "uniprot_ac": "F1SU68", "uniprot_id": "F1SU68_PIG", "mass": { "chemical_mass": 126019.0, "monoisotopic_mass": 126019.0 }, "refseq": {}, "gene_names": [ { "name": "CFAP70", "type": "recommended", "evidence": [ { "id": "F1SU68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU68" } ] } ], "protein_names": [ { "name": "Cilia and flagella associated protein 70", "type": "synonym", "evidence": [ { "id": "F1SU68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU68/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SU68", "url": "https://www.uniprot.org/uniprotkb/F1SU68" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFAP70", "url": "https://www.uniprot.org/uniprotkb/F1SU68", "locus": { "chromosome": "14", "start_pos": 76075275, "end_pos": 76198778, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010298", "url": "https://www.ensembl.org/id/ENSSSCG00000010298" } ] } } ], "crossref": [ { "id": "F1SU68", "url": "https://alphafold.ebi.ac.uk/entry/F1SU68", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010298", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010298", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052628", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052628", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR44314", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44314", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44314:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44314:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A4X1T610", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T610", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T610-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T610-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RIN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU68", "url": "https://www.uniprot.org/uniprotkb/F1SU68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU68-1", "url": "https://www.uniprot.org/uniprotkb/F1SU68-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQVSSTGRPVQITVTDGYDLKGFKGDAPVTFIRAEFNQVVLGDSAKITISPEGTAKYNFTSSFEFNTEGGITLDDLAHKPVFLTMTEVLPKEKKQKEEKTLILGQAVVDLLPLLEGESSFETMVPLHPVPGSPLEPLRSGVKQCSLEVKVFVAEPLLTTDQISEGNLLKVTLEAAYSVPESFIPLQNYMVGLQVPSAGEKDYPIFFKNGTLKLGGEREPVPRPKKWPIANILAPGANNIPDAFIVGGPYEEEEGELNHPEDREFRNQAECLKKRITWDLESRCYLDPPAVVSFQKRIADCRFWPVEITRVPLTTAPKGKGAKFEKTDDEGQPSFHGVAYVNMVPLLYPGVKRIRGAFHVYPYLNSTVYEKTKCLFSLFRDPGHNLIQNNKTGGINSPLSKPAVSKNLKEDKVVKEKDIEGKLRPGDMQAPSIKSQSSDTPLEVEPSLCNNPEGQQYVEAGTYIVLEIQLDKALVPKRMPEELARRVKEMIPPRPPLTRRTGGAQKAVSDYHMQIKNISRAILNEYHRMFGKQVAKLGNDLDCETLEEQKCQLNYELNCSGKCFAFKEQLKHAVVKIVREKYLKTTSFENQEELQKFISELYVFLVDQMHVALNQTMPDDVQGTASTIPTSSEQLRLFAFEAEVNENFEMAAAYYEERLVREPQNLEHWLDYGAFCLLTEDNIKAQECFRKALSLNQNHVHSLLLCGVLAVLMENYEQAEIFFEDATCLEPTNVVAWTLLGLYYEIQNNDIRMEMAFHEGFKQLQARMLQSQVTKQRSTGAVEFFEEGGKTESSLGLWGITSGSSTAAIKMEAQAGPGAPLSVLDEFLDESSHLKSDSHEPILSVQSQDPNTSQKPSNSFLKEIPPKKEASKWQESSTCLQPTPYSVSQTPITIFMETIRFLMKVNAVQYVHRVLAHELLCPQGGPSCEYYLVLAQTHLLKKDFAKAEEYLQQAAQMDYLNPNVWGVKGHLYFLSGNHAEAKACYERTVSFVVDASEMHFIFLRLGHIYLEEKEYEKAKKTYLQACKRSPSCLTWLGLGIACYRLEELTEAEDALSEANALNNYNAEVWAYLALVCLKAGRQLEAEQAYKYTMKLKLKDENLLAEIHTVQETVGFGNPSF", "length": 1120, "header": "tr|F1SU68-1|F1SU68_PIG Isoform 1 of Cilia and flagella associated protein 70 OS=Sus scrofa OX=9823 GN=CFAP70 PE=4 SV=4 CANONICAL=F1SU68-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T610-1", "url": "https://www.uniprot.org/uniprotkb/F1SU68/entry#A0A4X1T610-1", "sequence": { "sequence": "MEQVSSTGRPVQITVTDGYDLKGFKGDAPVTFIRAEFNQVVLGDSAKITISPEGTAKYNFTSSFEFNTEGGITLDDLAHKPVFLTMTEVLPKEKKQKEEKTLILGQAVVDLLPLLEGESSFETMVPLHPVPGSPLEPLRSGVKQCSLEVKVFVAEPLLTTDQISEGNLLKVTLEAAYSVPESFIPLQNYMVGLQVPSAGEKDYPIFFKNGTLNGNHAEAKACYERTVSFVVDASEMHFIFLRLGHIYLEEKEYEKAKKTYLQACKRSPSCLTWLGLGIACYRLEELTEAEDALSEANALNNYNAEVWAYLALVCLKAGRQLEAEQAYKYTMKLKLKDENLLAEIHTVQETVGFGNPSF", "length": 358, "header": "tr|A0A4X1T610-1|F1SU68_PIG Computationally mapped isoform of Cilia and flagella associated protein 70 OS=Sus scrofa OX=9823 GN=CFAP70 PE=4 SV=1 CANONICAL=F1SU68-1" }, "locus": { "chromosome": "14", "start_pos": 76196488, "end_pos": 76075502, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066478.2", "url": "https://www.ensembl.org/id/ENSSSCT00000066478.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063590.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063590.1" } ] } }, { "isoform_ac": "A0A5G2RIN6-1", "url": "https://www.uniprot.org/uniprotkb/F1SU68/entry#A0A5G2RIN6-1", "sequence": { "sequence": "MEQVSSTGRPVQITVTDGYDLKGFKGDAPVTFIRAEFNQVVLGDSAKITISPEGTAKYNFTSSFEFNTEGGITLDDLAHKPVFLTMTEVLPKEKKQKEEKTLILGQAVVDLLPLLEGESSFETMVPLHPVPGSPLEPLRSGVKCSLEVKVFVAEPLLTTDQISEGNLLKVTLEAAYSVPESFIPLQNYMVGLQVPSAGEKDYPIFFKNGTLKLGGEREPVPRPKKWPIANILAPGANNIPDAFIVGGPYEEEEGELNHPEDREFRNQAECLKKRITWDLESRCYLDPPAVVSFQKRIADCRFWPVEITRVPLTTAPKGKGAKFEKTDDEGQPSFHGVAYVNMVPLLYPGVKRIRGAFHVYPYLNSTVYEKTKCLFSLFRDPGHNLIQNNKTGGINSPLSKPAVSKNLKEDKVVKEKDIEGKLRPGDMQAPSIKSQSSDTPLEVEPSLCNNPEGQQYVEAGTYIVLEIQLDKALVPKRMPEELARRVKEMIPPRPPLTRRTGGAQKAISDYHMQIKNISRAILNEYHRMFGKQVAKLGNDLDCETLEEQKCQLNYELNCSGKCFAFKEQLKHAVVKIVREKYLKTTSFENQEELQKFISELYVFLVDQMHVALNQTMPDDVQGTASTIPTSSEQLRLFAFEAEVNENFEMAAAYYEERLVREPQNLEHWLDYGAFCLLTEDNIKAQECFRKALSLNQNHVHSLLLCGVLAVLMENYEQAEIFFEDATCLEPTNVVAWTLLGLYYEIQNNDIRMEMAFHEGFKQLQARMLQSQVTKQRSTGAVEFFEEGGKTESSLGLWGITSGSSTAAIKMEAQAGAPLSVLDEFLDESSHLKSDSHEPILSVQSQDPNTSQKPSNSFLKEIPPKKEASKWQESSTCLQPTPYSVSQTPITIFMETIRFLMKVNAVQYVHRVLAHELLCPQGGPSCEYYLVLAQTHLLKKDFAKAEEYLQQAAQMDYLNPNVWGVKGHLYFLSGNHAEAKACYERTVSFVVDASEMHFIFLRLGHIYLEEKELEELTEAEDALSEANALNNYNAEDKCFLRSVSQSNRNKSKNKPMGPNQMDKLLHSKRNQKDNLWNGRK", "length": 1079, "header": "tr|A0A5G2RIN6-1|F1SU68_PIG Computationally mapped isoform of Cilia and flagella associated protein 70 OS=Sus scrofa OX=9823 GN=CFAP70 PE=4 SV=2 CANONICAL=F1SU68-1" }, "locus": { "chromosome": "14", "start_pos": 76196488, "end_pos": 76090241, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081538.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081538.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071493.2", "url": "https://www.ensembl.org/id/ENSSSCP00000071493.2" } ] } }, { "isoform_ac": "F1SU68-1", "url": "https://www.uniprot.org/uniprotkb/F1SU68/entry#F1SU68-1", "sequence": { "sequence": "MEQVSSTGRPVQITVTDGYDLKGFKGDAPVTFIRAEFNQVVLGDSAKITISPEGTAKYNFTSSFEFNTEGGITLDDLAHKPVFLTMTEVLPKEKKQKEEKTLILGQAVVDLLPLLEGESSFETMVPLHPVPGSPLEPLRSGVKQCSLEVKVFVAEPLLTTDQISEGNLLKVTLEAAYSVPESFIPLQNYMVGLQVPSAGEKDYPIFFKNGTLKLGGEREPVPRPKKWPIANILAPGANNIPDAFIVGGPYEEEEGELNHPEDREFRNQAECLKKRITWDLESRCYLDPPAVVSFQKRIADCRFWPVEITRVPLTTAPKGKGAKFEKTDDEGQPSFHGVAYVNMVPLLYPGVKRIRGAFHVYPYLNSTVYEKTKCLFSLFRDPGHNLIQNNKTGGINSPLSKPAVSKNLKEDKVVKEKDIEGKLRPGDMQAPSIKSQSSDTPLEVEPSLCNNPEGQQYVEAGTYIVLEIQLDKALVPKRMPEELARRVKEMIPPRPPLTRRTGGAQKAVSDYHMQIKNISRAILNEYHRMFGKQVAKLGNDLDCETLEEQKCQLNYELNCSGKCFAFKEQLKHAVVKIVREKYLKTTSFENQEELQKFISELYVFLVDQMHVALNQTMPDDVQGTASTIPTSSEQLRLFAFEAEVNENFEMAAAYYEERLVREPQNLEHWLDYGAFCLLTEDNIKAQECFRKALSLNQNHVHSLLLCGVLAVLMENYEQAEIFFEDATCLEPTNVVAWTLLGLYYEIQNNDIRMEMAFHEGFKQLQARMLQSQVTKQRSTGAVEFFEEGGKTESSLGLWGITSGSSTAAIKMEAQAGPGAPLSVLDEFLDESSHLKSDSHEPILSVQSQDPNTSQKPSNSFLKEIPPKKEASKWQESSTCLQPTPYSVSQTPITIFMETIRFLMKVNAVQYVHRVLAHELLCPQGGPSCEYYLVLAQTHLLKKDFAKAEEYLQQAAQMDYLNPNVWGVKGHLYFLSGNHAEAKACYERTVSFVVDASEMHFIFLRLGHIYLEEKEYEKAKKTYLQACKRSPSCLTWLGLGIACYRLEELTEAEDALSEANALNNYNAEVWAYLALVCLKAGRQLEAEQAYKYTMKLKLKDENLLAEIHTVQETVGFGNPSF", "length": 1120, "header": "tr|F1SU68-1|F1SU68_PIG Isoform 1 of Cilia and flagella associated protein 70 OS=Sus scrofa OX=9823 GN=CFAP70 PE=4 SV=4 CANONICAL=F1SU68-1" }, "locus": { "chromosome": "14", "start_pos": 76196488, "end_pos": 76075502, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011271.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011271.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010979.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010979.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RIN6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RIN6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "axonemal central apparatus", "id": "GO:1990716", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990716", "evidence": [ { "database": "UniProtKB", "id": "F1SU68", "url": "https://www.uniprot.org/uniprotkb/F1SU68" } ], "pmid": "" }, { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "F1SU68", "url": "https://www.uniprot.org/uniprotkb/F1SU68" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "F1SU68", "url": "https://www.uniprot.org/uniprotkb/F1SU68" } ], "pmid": "" }, { "name": "manchette", "id": "GO:0002177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002177", "evidence": [ { "database": "UniProtKB", "id": "F1SU68", "url": "https://www.uniprot.org/uniprotkb/F1SU68" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "spermatid development", "id": "GO:0007286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007286", "evidence": [ { "database": "UniProtKB", "id": "F1SU68", "url": "https://www.uniprot.org/uniprotkb/F1SU68" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SU68", "url": "https://www.uniprot.org/uniprotkb/F1SU68" } ], "pmid": "" }, { "name": "cilium movement", "id": "GO:0003341", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003341", "evidence": [ { "database": "UniProtKB", "id": "F1SU68", "url": "https://www.uniprot.org/uniprotkb/F1SU68" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" }, { "start_pos": 517, "end_pos": 519, "annotation": "n_glycosylation_sequon" }, { "start_pos": 558, "end_pos": 560, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 614, "end_pos": 616, "annotation": "n_glycosylation_sequon" }, { "start_pos": 851, "end_pos": 853, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SU68-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1120, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SU68-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SU68" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 209, "end_pos": 211 }, { "start_pos": 365, "end_pos": 367 }, { "start_pos": 390, "end_pos": 392 }, { "start_pos": 517, "end_pos": 519 }, { "start_pos": 558, "end_pos": 560 }, { "start_pos": 59, "end_pos": 61 }, { "start_pos": 614, "end_pos": 616 }, { "start_pos": 851, "end_pos": 853 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSK1-1", "uniprot_ac": "F1SSK1", "uniprot_id": "F1SSK1_PIG", "mass": { "chemical_mass": 169320.0, "monoisotopic_mass": 169320.0 }, "refseq": {}, "gene_names": [ { "name": "KIAA0586", "type": "recommended", "evidence": [ { "id": "F1SSK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSK1" } ] } ], "protein_names": [ { "name": "KIAA0586", "type": "synonym", "evidence": [ { "id": "F1SSK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSK1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSK1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KIAA0586", "url": "https://www.uniprot.org/uniprotkb/F1SSK1", "locus": { "chromosome": "1", "start_pos": 187642492, "end_pos": 187504638, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005076", "url": "https://www.ensembl.org/id/ENSSSCG00000005076" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005076", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005076", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15721", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15721", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15721:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15721:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15324", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15324", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A286ZJD6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZJD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLY7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZLY7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZLY7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWS6", "url": "https://www.uniprot.org/uniprotkb/A0A287AWS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AWS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AWS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSK1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSK1-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFWCETSFVTSNMKGSEFSLEKKKKVKIPARRLREVVSSSQGDNLALLKDKLSCVPPVLSANKCLPVRTGKSSNGTLPGSSDLTSVRNCQQPPLENSTVSENRFSKDVAVQGLPLDKTEENNRQANDIFISQYTMGQKDALRAVLKQKAQSMPVFKEVKVQLLEDASTEKDAVTQENRTSPSGIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVTELLNKLQETDKQLQRVTEQQTSIQSKQEKLHCHDHEKQMSVFMEQHIRHLEKLQQQQIDIQTHFISAALKTSSFQPITGPPSRSVEEYSVKPDHVNFGSCNLSSDNTFASKQAPSREVEDMNFDKQKSPLETPTPRRFAPVPVSKDDKISKRENPMEEKENMEMSHHTGNIRLLEQILNNPDSLTRISESSGKTPLTRSKLGWQPERRNRFPSYEELGRAKVTMQKSDDILHDLGQNKKETNGILQPKESQIVSRLADLPQNSIKLQTTSTRSVLKDAEKILRGVQNNKKVLEENLEAIIRAKDGAAMYSFINALSTNREIPEKIRIRKTVDDWIKTISAEIQDELARKDYQQKKFDQKNQRTKRTQNMSKDIKTNTQGKTVNNSLFPRRHSQRPKEECFRNPPTRSMAASSLPKERKEGLLKATTEVQDNDYTLQIYGKPVYQGHRSTLKKGPYLRFNSPSPKFRPQRPKVIERVKGTKVKSIRTQTDFYATKPTKVDSKLQHSITTLSPGDQQYLFSPSREMPTFSGTLEGHLIPMAILLGQTQSNSDSMPPAGVIINKPHPITVTTSIPPSLRKTETRVKKPNIAVVEMKSEKDPPQLTVQTPEFMKADEEVKFPGTNFDEVIDIIQEEEQCDEIPEYSEPILEFNRSVKVVSTKYNGPPFPPVASTVQPTADVLDKVIQRKETLENSLIQWVEQEIMSRMISRLLPVQQQATANVSVSVSEASEPSTSDIVEGTSSGALQLFVDAGIPVNSDMIRHFVNEALAETIAVMLGDGEAKKQGPVVTSISGDVSTAHLPARACTPLPTPQPTPPCSPSPLPKECVLVKTPDSSPCVSDHDVALPVKEIFAEEGNDMPGITLVNTPAVTPATTPPPAAVLTPTLSETSIDQLKISSPELPKPWGDRDLPLEEENPSSLQEELHPRAIVMSVAKDEEPESMGVPVQPPPPEPVPVMALPTGTKAPAPTQMPSLDSSTTESTFSITVTETEPIDRLLSEGEILLNCGQKVVPKILGDEGLYMTNLNDSLSSTLQDALEMEDDPPSEGQVTRMSYRKIHADAILSLRAKQNQESLVQQQAACHSENLENSVDELSGGQRPSLTAENILLGHSAYTQEPVANTESSDQKCAPKPLSQQCDTVTGGVYEDSCASHGPMSLEELELQPHPHVALPKTLLTAQENDVKLSVAATDFPQYQQKEDQDVKQVEHKPVQSRLIHVRSKSDISLQPQQTSPGDMDQTQIEPTLYLASVFTWESSTALHSSDVTSQDVSDCPLSEPGGRRSVSEHQHHPGGHRVLRSRYLLNGKEPGPCLCCWF", "length": 1530, "header": "tr|F1SSK1-1|F1SSK1_PIG Isoform 1 of KIAA0586 OS=Sus scrofa OX=9823 GN=KIAA0586 PE=4 SV=5 CANONICAL=F1SSK1-1" }, "isoforms": [ { "isoform_ac": "A0A286ZJD6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1/entry#A0A286ZJD6-1", "sequence": { "sequence": "MKGSEFSLEKKKKVKIPARRLREVVSSSQGDNLALLKDKLSCVPPVLSANKCLPVRTGKSSNGTLPGSSDLTSVRNCQQPPLENSTVSENRFSKDVAVQGLPLDKTEENNRQANDIFISQYTMGQKDALRAVLKQKAQSMPVFKEVKVQLLEDASTEKDAVTQENRTSPSGIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVTELLNKLQETDKQLQRVTEQQTSIQSKQEKLHCHDHEKQMSVFMEQHIRHLEKLQQQQIDIQTHFISAALKTSSFQPITGPPSRSVEEYSVKPDHVNFGSCNLSSDNTFASKQAPSREVEDMNFDKQKSPLETPTPRRFAPVPVSKDDKISKRENPMEEKENMEMSHHTGNIRLLEQILNNPDSLTRISESSGKTPLTRSKLGWQPERRNRFPSYEELGRAKVTMQKSDDILHDLGQNKKETNGILQPKESQIVSRLADLPQNSIKLQTTSTRSVLKDAEKILRGVQNNKKVLEENLEAIIRAKDGAAMYSFINALSTNREIPEKIRIRKTVDDWIKTISAEIQDELARKDYQQKKFDQKNQRTKRTQNMSKDIKTNTQGKTVNNSLFPRRHSQRPKEECFRNPPTRSMAASSLPKERKEGLLKATTEVQDNDYTLQIYGKPVYQGHRSTLKKGPYLRFNSPSPKFRPQRPKVIERVKGTKVKSIRTQTDFYATKPTKVDSKLQHSITTLSPGDQQYLFSPSREMPTFSGTLEGHLIPMAILLGQTQSNSDSMPPAGVIINKPHPITVTTSIPPSLRKTETRVKKPNIAVVEMKSEKDPPQLTVQTPEFMKADEEVKFPGTNFDEVIDIIQEEEQCDEIPEYSEPILEFNRSVKVVSTKYNGPPFPPVASTVQPTADVLDKVIQRKETLENSLIQWVEQEIMSRMISRLLPVQQQATANVSVSVSEASEPSTSDIVEGTSSGALQLFVDAGIPVNSDMIRHFVNEALAETIAVMLGDGEAKKQGPVVTSISGDVSTAHLPARACTPLPTPQPTPPCSPSPLPKECVLVKTPDSSPCVSDHDVALPVKEIFAEEGNDMPGITLVNTPAVTPATTPPPAAVLTPTLSETSIDQLKISSPELPKPWGDRDLPLEEENPSSLQEELHPRAIVMSVAKDEEPESMGVPVQPPPPEPVPVMALPTGTKAPAPTQMPSLDSSTTESTFSITVTETEPIDRLLSEGEILLNCGQKVVPKILGDEGLYMTNLNDSLSSTLQDALEMEDDPPSEGQVTRMSYRKIHADAILSLRAKQNQESLVQQQAACHSENLENSVDELSGGQRPSLTAENILLGHSAYTQEPVANTESSDQKCAPKPLSQQCDTVTGGVYEDSCASHGPMSLEELELQPHPHVALPKTLLTAQENDVKLSVAATDFPQYQQKEDQDVKQVEHKPVQSRLIHVRSKSDISLQPQQTSPGDMDQTQIEPTLYLASVFTGGKAVPLFTPQMSPPRMSLTVPSVNLEDGAQSLSINTIQGDTESSGADTF", "length": 1505, "header": "tr|A0A286ZJD6-1|F1SSK1_PIG Computationally mapped isoform of KIAA0586 OS=Sus scrofa OX=9823 GN=KIAA0586 PE=4 SV=2 CANONICAL=F1SSK1-1" }, "locus": { "chromosome": "1", "start_pos": 187642298, "end_pos": 187505351, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000051083.3", "url": "https://www.ensembl.org/id/ENSSSCT00000051083.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031640.3", "url": "https://www.ensembl.org/id/ENSSSCP00000031640.3" } ] } }, { "isoform_ac": "A0A286ZLY7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1/entry#A0A286ZLY7-1", "sequence": { "sequence": "MKGSEFSLEKKKKVKIPARRLREVVSSSQGDNLALLKDKLSCVPPVLSANKCLPVRTGKSSNGTLPGSSDLTSVRNCQQPPLENSTVSENRFSKDVAVQGLPLDKTEENNRQANDIFISQYTMGQKDALRAVLKQKAQSMPVFKEVKVQLLEDASTEKDAVTQENRTSPSGIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVTELLNKLQETDKQLQRVTEQQTSIQSKQEKLHCHDHEKQMSVFMEQHIRHLEKLQQQQIDIQTHFISAALKTSSFQPITGPPSRSVEEYSVKPDHVNFGSCNLSSDNTFASKQAPSREVEDMNFDKQKSPLETPTPRRFAPVPVSKDDKISKRENPMEEKENMEMSHHTGNIRLLEQILNNPDSLTRISESSGKTPLTRSKLGWQPERRNRFPSYEELGRAKVTMQKSDDILHDLGQNKKETNGILQPKESQIVSRLADLPQNSIKLQTTSTRSVLKDAEKILRGVQNNKKVLEENLEAIIRAKDGAAMYSFINALSTNREIPEKIRIRKTVDDWIKTISAEIQDELARKDYQQKKFDQKNQRTKRTQNMSKDIKTNTQGKTVNNSLFPRRHSQRPKEECFRNPPTRSMAASSLPKERKEGLLKATTEVQDNDYTLQIYGKPVYQGHRSTLKKGPYLRFNSPSPKFRPQRPKVIERVKGTKVKSIRTQTDFYATKPTKVDSKLQHSITTLSPGDQQYLFSPSREMPTFSGTLEGHLIPMAILLGQTQSNSDSMPPAGVIINKPHPITVTTSIPPSLRKTETRVKKPNIAVVEMKSEKDPPQLTVQEEEQCDEIPEYSEPILEFNRSVKVVSTKYNGPPFPPVASTVQPTADVLDKVIQRKETLENSLIQWVEQEIMSRMISRLLPVQQQATANVSVSVSEASEPSTSDIVEGTSSGALQLFVDAGIPVNSDMIRHFVNEALAETIAVMLGDGEAKKQGPVVTSISGDVSTAHLPARACTPLPTPQPTPPCSPSPLPKECVLVKTPDSSPCVSDHDVALPVKEIFAEEGNDMPGITLVNTPAVTPATTPPPAAVLTPTLSETSIDQLKISSPELPKPWGDRDLPLEEENPSSLQEELHPRAIVMSVAKDEEPESMGVPVQPPPPEPVPVMALPTGTKAPAPTQMPSLDSSTTESTFSITVTETEPIDRLLSEGEILLNCGQKVVPKILGDEGLYMTNLNDSLSSTLQDALEMEDDPPSEGQVTRMSYRKIHADAILSLRAKQNQESLVQQQAACHSENLENSVDELSGGQRPSLTAENILLGHSAYTQEPVANTESSDQKCAPKPLSQQCDTVTGGVYEDSCASHGPMSLEELELQPHPHVALPKTLLTAQENDVKLSVAATDFPQYQQKEDQDVKQVEHKPVQSRLIHVRSKSDISLQPQQTSPGDMDQTQIEPTLYLASVFTGGKAVPLFTPQMSPPRMSLTVPSVNLEDGAQSLSINTIQGDTESSGADTF", "length": 1479, "header": "tr|A0A286ZLY7-1|F1SSK1_PIG Computationally mapped isoform of KIAA0586 OS=Sus scrofa OX=9823 GN=KIAA0586 PE=4 SV=2 CANONICAL=F1SSK1-1" }, "locus": { "chromosome": "1", "start_pos": 187642298, "end_pos": 187505351, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046539.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046539.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000032482.3", "url": "https://www.ensembl.org/id/ENSSSCP00000032482.3" } ] } }, { "isoform_ac": "A0A287AWS6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1/entry#A0A287AWS6-1", "sequence": { "sequence": "MKGSEFSLEKKKKVKIPARRLREVVSSSQGDNLALLKDKLSCVPPVLSANKCLPVRTGKSSNGTLPGSSDLTSVRNCQQPPLENSTVSENRFSKDVAVQGLPLDKTEENNRQANDIFISQYTMGQKDALRAVLKQKAQSMPVFKEVKVQLLEDASTEKDAVTQENRTSPSGIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVTELLNKLQETDKQLQRVTEQQTSIQSKQEKLHCHDHEKQMSVFMEQHIRHLEKLQQQQIDIQTHFISAALKTSSFQPITGPPSRSVEEYSVKPDHVNFGSCNLSSDNTFASKQAPSREVEDMNFDKQKSPLETPTPRRFAPVPVSKDDKISKRENPMEEKENMEMSHHTGNIRLLEQILNNPDSLTRISESSGKTPLTRSKLGWQPERRNRFPSYEELGRAKVTMQKSDDILHDLGQNKKETNGILQPKESQIVSRLADLPQNSIKLQTTSTRSVLKDAEKILRGVQNNKKVLEENLEAIIRAKDGAAMYSFINALSTNREIPEKIRIRKTVDDWIKTISAEIQGLLKATTEVQDNDYTLQIYGKPVYQGHRSTLKKGPYLRFNSPSPKFRPQRPKVIERVKGTKVKSIRTQTDFYATKPTKVDSKLQHSITTLSPGDQQYLFSPSREMPTFSGTLEGHLIPMAILLGQTQSNSDSMPPAGVIINKPHPITVTTSIPPSLRKTETRVKKPNIAVVEMKSEKDPPQLTVQTPEFMKADEEVKFPGTNFDEVIDIIQEEEQCDEIPEYSEPILEFNRSVKVVSTKYNGPPFPPVASTVQPTADVLDKVIQRKETLENSLIQWVEQEIMSRMISRLLPVQQQATANVSVSVSEASEPSTSDIVEGTSSGALQLFVDAGIPVNSDMIRHFVNEALAETIAVMLGDGEAKKQGPVVTSISGDVSTAHLPARACTPLPTPQPTPPCSPSPLPKECVLVKTPDSSPCVSDHDVALPVKEIFAEEGNDMPGITLVNTPAVTPATTPPPAAVLTPTLSETSIDQLKISSPELPKPWGDRDLPLEEENPSSLQEELHPRAIVMSVAKDEEPESMGVPVQPPPPEPVPVMALPTGTKAPAPTQMPSLDSSTTESTFSITVTETEPIDRLLSEGEILLNCGQKVVPKILGDEGLYMTNLNDSLSSTLQDALEMEDDPPSEGQVTRMSYRKIHADAILSLRAKQNQESLVQQQAACHSENLENSVDELSGGQRPSLTAENILLGHSAYTQEPVANTESSDQKCAPKPLSQQCDTVTGGVYEDSCASHGPMSLEELELQPHPHVALPKTLLTAQENDVKLSVAATDFPQYQQKEDQDVKQVEHKPVQSRLIHVRSKSDISLQPQQTSPGDMDQTQIEPTLYLASVFTGGKAVPLFTPQMSPPRMSLTVPSVNLEDGAQSLSINTIQGDTESSGADTF", "length": 1429, "header": "tr|A0A287AWS6-1|F1SSK1_PIG Computationally mapped isoform of KIAA0586 OS=Sus scrofa OX=9823 GN=KIAA0586 PE=4 SV=2 CANONICAL=F1SSK1-1" }, "locus": { "chromosome": "1", "start_pos": 187642298, "end_pos": 187505351, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063997.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063997.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048601.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048601.3" } ] } }, { "isoform_ac": "F1SSK1-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1/entry#F1SSK1-1", "sequence": { "sequence": "MFWCETSFVTSNMKGSEFSLEKKKKVKIPARRLREVVSSSQGDNLALLKDKLSCVPPVLSANKCLPVRTGKSSNGTLPGSSDLTSVRNCQQPPLENSTVSENRFSKDVAVQGLPLDKTEENNRQANDIFISQYTMGQKDALRAVLKQKAQSMPVFKEVKVQLLEDASTEKDAVTQENRTSPSGIDSATTVAAATAAAIATAAPLIKVQSDLEAKVNSVTELLNKLQETDKQLQRVTEQQTSIQSKQEKLHCHDHEKQMSVFMEQHIRHLEKLQQQQIDIQTHFISAALKTSSFQPITGPPSRSVEEYSVKPDHVNFGSCNLSSDNTFASKQAPSREVEDMNFDKQKSPLETPTPRRFAPVPVSKDDKISKRENPMEEKENMEMSHHTGNIRLLEQILNNPDSLTRISESSGKTPLTRSKLGWQPERRNRFPSYEELGRAKVTMQKSDDILHDLGQNKKETNGILQPKESQIVSRLADLPQNSIKLQTTSTRSVLKDAEKILRGVQNNKKVLEENLEAIIRAKDGAAMYSFINALSTNREIPEKIRIRKTVDDWIKTISAEIQDELARKDYQQKKFDQKNQRTKRTQNMSKDIKTNTQGKTVNNSLFPRRHSQRPKEECFRNPPTRSMAASSLPKERKEGLLKATTEVQDNDYTLQIYGKPVYQGHRSTLKKGPYLRFNSPSPKFRPQRPKVIERVKGTKVKSIRTQTDFYATKPTKVDSKLQHSITTLSPGDQQYLFSPSREMPTFSGTLEGHLIPMAILLGQTQSNSDSMPPAGVIINKPHPITVTTSIPPSLRKTETRVKKPNIAVVEMKSEKDPPQLTVQTPEFMKADEEVKFPGTNFDEVIDIIQEEEQCDEIPEYSEPILEFNRSVKVVSTKYNGPPFPPVASTVQPTADVLDKVIQRKETLENSLIQWVEQEIMSRMISRLLPVQQQATANVSVSVSEASEPSTSDIVEGTSSGALQLFVDAGIPVNSDMIRHFVNEALAETIAVMLGDGEAKKQGPVVTSISGDVSTAHLPARACTPLPTPQPTPPCSPSPLPKECVLVKTPDSSPCVSDHDVALPVKEIFAEEGNDMPGITLVNTPAVTPATTPPPAAVLTPTLSETSIDQLKISSPELPKPWGDRDLPLEEENPSSLQEELHPRAIVMSVAKDEEPESMGVPVQPPPPEPVPVMALPTGTKAPAPTQMPSLDSSTTESTFSITVTETEPIDRLLSEGEILLNCGQKVVPKILGDEGLYMTNLNDSLSSTLQDALEMEDDPPSEGQVTRMSYRKIHADAILSLRAKQNQESLVQQQAACHSENLENSVDELSGGQRPSLTAENILLGHSAYTQEPVANTESSDQKCAPKPLSQQCDTVTGGVYEDSCASHGPMSLEELELQPHPHVALPKTLLTAQENDVKLSVAATDFPQYQQKEDQDVKQVEHKPVQSRLIHVRSKSDISLQPQQTSPGDMDQTQIEPTLYLASVFTWESSTALHSSDVTSQDVSDCPLSEPGGRRSVSEHQHHPGGHRVLRSRYLLNGKEPGPCLCCWF", "length": 1530, "header": "tr|F1SSK1-1|F1SSK1_PIG Isoform 1 of KIAA0586 OS=Sus scrofa OX=9823 GN=KIAA0586 PE=4 SV=5 CANONICAL=F1SSK1-1" }, "locus": { "chromosome": "1", "start_pos": 187642342, "end_pos": 187504638, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005594.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005594.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005454.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005454.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1027, "start_aa": "Thr", "end_pos": 1027, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1027", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1031, "start_aa": "Thr", "end_pos": 1031, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1031", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1087, "start_aa": "Thr", "end_pos": 1087, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1087", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1185, "start_aa": "Thr", "end_pos": 1185, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1185", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZJD6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZJD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "smoothened signaling pathway", "id": "GO:0007224", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007224", "evidence": [ { "database": "UniProtKB", "id": "F1SSK1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SSK1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1SSK1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1SSK1", "url": "https://www.uniprot.org/uniprotkb/F1SSK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1242, "end_pos": 1244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 320, "end_pos": 322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 587, "end_pos": 589, "annotation": "n_glycosylation_sequon" }, { "start_pos": 602, "end_pos": 604, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" }, { "start_pos": 868, "end_pos": 870, "annotation": "n_glycosylation_sequon" }, { "start_pos": 937, "end_pos": 939, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1027, 1031, 1087, 1185 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1242, "end_pos": 1244 }, { "start_pos": 177, "end_pos": 179 }, { "start_pos": 320, "end_pos": 322 }, { "start_pos": 587, "end_pos": 589 }, { "start_pos": 602, "end_pos": 604 }, { "start_pos": 74, "end_pos": 76 }, { "start_pos": 868, "end_pos": 870 }, { "start_pos": 937, "end_pos": 939 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST00-1", "uniprot_ac": "F1ST00", "uniprot_id": "F1ST00_PIG", "mass": { "chemical_mass": 71053.0, "monoisotopic_mass": 71053.0 }, "refseq": { "ac": "XP_003125814", "name": "DNA-binding protein RFX5 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125814" }, "gene_names": [ { "name": "RFX5", "type": "recommended", "evidence": [ { "id": "F1ST00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ] }, { "name": "RFX5", "type": "synonym", "evidence": [ { "id": "XP_003125814", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125814" } ] } ], "protein_names": [ { "name": "DNA-binding protein RFX5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003125814", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125814" } ] }, { "name": "Regulatory factor X5", "type": "synonym", "evidence": [ { "id": "F1ST00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST00/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RFX5", "url": "https://www.uniprot.org/uniprotkb/F1ST00", "locus": { "chromosome": "4", "start_pos": 97913283, "end_pos": 97902172, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006625", "url": "https://www.ensembl.org/id/ENSSSCG00000006625" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006625", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006625", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517711", "url": "https://www.ncbi.nlm.nih.gov/gene/100517711", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039779", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039779", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517711", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517711", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZNU7", "url": "https://www.orthodb.org/?gene=A0A286ZNU7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1ST00", "url": "https://www.orthodb.org/?gene=F1ST00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12619", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12619", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12619:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12619:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02257", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02257", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125814", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125814", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZNU7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZNU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNU7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST00-1", "url": "https://www.uniprot.org/uniprotkb/F1ST00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIERAVRVSRQIGAVPAIQKKENKATHEPAGPGPWGWAEVKVATSPHARMAEDEPDAKSPKTGGRAPSGSAEAGEPTTLLQRLRGTISKAVQNKVEGILQDVQKFSDNDKLYLYLQLPSGPSTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLKGSESPEMGPEVTPAPRDELVEAACALTCDWAERILKRSFSSIVEVARFLLQQHLISARSAHAHVLKAMGLAEEDEHAPRERSSKSKNGVENLEGGAHKRPERQAQPPKELEARAGAGPPARGERKKSVVETPVPAPSNPHVNALVARLPLLLPRAPPSPIPPIRVSPSILAPKLSSGTLKMATLPLPSRGGGPQAAVPIFNMILPTVPALPGPGPGPGPGPGPGPGQAPPGGLTQPRGTENREVSIGGDPGPHDKGVKRTAEVPVSEASGQDPPAKATKQDVEDTGSDAKRKRGRPRKKSGGSRERNSTPDKSADAVDAAQPSRLPPETWASGGESNSERPGLGGEAEKGVLAQGQEGGAVSRGGRGPSSRHAKETEDKIPPVAPKVSVIRGSRSQKEALHLVKGEVDTAAQGNKDLKGHVLQSSLPLERKDPKATPP", "length": 668, "header": "tr|F1ST00-1|F1ST00_PIG Isoform 1 of Regulatory factor X5 OS=Sus scrofa OX=9823 GN=RFX5 PE=1 SV=2 CANONICAL=F1ST00-1" }, "isoforms": [ { "isoform_ac": "A0A286ZNU7-1", "url": "https://www.uniprot.org/uniprotkb/F1ST00/entry#A0A286ZNU7-1", "sequence": { "sequence": "MAEDEPDAKSPKTGGRAPSGSAEAGEPTTLLQRLRGTISKAVQNKVEGILQDVQKFSDNDKLYLYLQLPSGPSTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLKGSESPEMGPEVTPAPRDELVEAACALTCDWAERILKRSFSSIVEVARFLLQQHLISARSAHAHVLKAMGLAEEDEHAPRERSSKSKNGVENLEGGAHKRPERQAQPPKELEARAGAGPPARGERKKSVVETPVPAPSNPHVNALVARLPLLLPRAPPSPIPPIRVSPSILAPKLSSGTLKMATLPLPSRGGGPQAAVPIFNMILPTVPALPGPGPGPGPGPGPGPGQAPPGGLTQPRGTENREVSIGGDPGPHDKGVKRTAEVPVSEASGQDPPAKATKQDVEDTGSDAKRKRGRPRKKSGGSRERNSTPDKSADAVDAAQPSRLPPETWASGGESNSERPGLGGEAEKGVLAQGQEGGAVSRGGRGPSSRHAKETEDKIPPVAPKVSVIRGSRSQKEALHLVKGEVDTAAQGNKDLKGHVLQSSLPLERKDPKATPP", "length": 619, "header": "tr|A0A286ZNU7-1|F1ST00_PIG Computationally mapped isoform of Regulatory factor X5 OS=Sus scrofa OX=9823 GN=RFX5 PE=1 SV=1 CANONICAL=F1ST00-1" }, "locus": { "chromosome": "4", "start_pos": 97907152, "end_pos": 97903393, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000038962.2", "url": "https://www.ensembl.org/id/ENSSSCT00000038962.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033291.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033291.1" } ] } }, { "isoform_ac": "F1ST00-1", "url": "https://www.uniprot.org/uniprotkb/F1ST00/entry#F1ST00-1", "sequence": { "sequence": "MIERAVRVSRQIGAVPAIQKKENKATHEPAGPGPWGWAEVKVATSPHARMAEDEPDAKSPKTGGRAPSGSAEAGEPTTLLQRLRGTISKAVQNKVEGILQDVQKFSDNDKLYLYLQLPSGPSTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDLKGSESPEMGPEVTPAPRDELVEAACALTCDWAERILKRSFSSIVEVARFLLQQHLISARSAHAHVLKAMGLAEEDEHAPRERSSKSKNGVENLEGGAHKRPERQAQPPKELEARAGAGPPARGERKKSVVETPVPAPSNPHVNALVARLPLLLPRAPPSPIPPIRVSPSILAPKLSSGTLKMATLPLPSRGGGPQAAVPIFNMILPTVPALPGPGPGPGPGPGPGPGQAPPGGLTQPRGTENREVSIGGDPGPHDKGVKRTAEVPVSEASGQDPPAKATKQDVEDTGSDAKRKRGRPRKKSGGSRERNSTPDKSADAVDAAQPSRLPPETWASGGESNSERPGLGGEAEKGVLAQGQEGGAVSRGGRGPSSRHAKETEDKIPPVAPKVSVIRGSRSQKEALHLVKGEVDTAAQGNKDLKGHVLQSSLPLERKDPKATPP", "length": 668, "header": "tr|F1ST00-1|F1ST00_PIG Isoform 1 of Regulatory factor X5 OS=Sus scrofa OX=9823 GN=RFX5 PE=1 SV=2 CANONICAL=F1ST00-1" }, "locus": { "chromosome": "4", "start_pos": 97907152, "end_pos": 97902371, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007259.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007259.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007064.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007064.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 242, "start_aa": "Thr", "end_pos": 242, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr242", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZNU7", "url": "https://www.uniprot.org/uniprotkb/A0A286ZNU7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517711", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517711", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" }, { "name": "transcription coregulator binding", "id": "GO:0001221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001221", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulator complex", "id": "GO:0090575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090575", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" }, { "name": "positive regulation of MHC class II biosynthetic process", "id": "GO:0045348", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045348", "evidence": [ { "database": "UniProtKB", "id": "F1ST00", "url": "https://www.uniprot.org/uniprotkb/F1ST00" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 537, "end_pos": 539, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST00" }, { "id": "PS51526", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51526" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RFX-type winged-helix", "eco_id": "ECO_0000259", "start_pos": 141, "end_pos": 217, "start_aa": "Ala", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 242 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 537, "end_pos": 539 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5U8-1", "uniprot_ac": "I3L5U8", "uniprot_id": "I3L5U8_PIG", "mass": { "chemical_mass": 49143.0, "monoisotopic_mass": 49143.0 }, "refseq": { "ac": "XP_020922218", "name": "UNC93-like protein MFSD11", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922218" }, "gene_names": [ { "name": "MFSD11", "type": "recommended", "evidence": [ { "id": "I3L5U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U8" } ] }, { "name": "MFSD11", "type": "synonym", "evidence": [ { "id": "XP_020922218", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922218" } ] } ], "protein_names": [ { "name": "UNC93-like protein MFSD11", "type": "recommended", "evidence": [ { "id": "I3L5U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U8/entry#names_and_taxonomy" } ] }, { "name": "Major facilitator superfamily domain-containing protein 11", "type": "synonym", "evidence": [ { "id": "I3L5U8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U8/entry#names_and_taxonomy" } ] }, { "name": "UNC93-like protein MFSD11", "type": "synonym", "evidence": [ { "id": "XP_020922218", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922218" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5U8", "url": "https://www.uniprot.org/uniprotkb/I3L5U8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MFSD11", "url": "https://www.uniprot.org/uniprotkb/I3L5U8", "locus": { "chromosome": "12", "start_pos": 4774678, "end_pos": 4801456, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029343", "url": "https://www.ensembl.org/id/ENSSSCG00000029343" } ] } } ], "crossref": [ { "id": "I3L5U8", "url": "https://alphafold.ebi.ac.uk/entry/I3L5U8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000029343", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029343", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17407", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17407", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100622284", "url": "https://www.ncbi.nlm.nih.gov/gene/100622284", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100622284", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622284", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QFQDKTH", "url": "https://omabrowser.org/oma/group/QFQDKTH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L5U8", "url": "https://www.orthodb.org/?gene=I3L5U8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23294", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23294", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23294:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23294:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05978", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05978", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020922218", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922218", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZT57", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZT57-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT57-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5U8", "url": "https://www.uniprot.org/uniprotkb/I3L5U8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5U8-1", "url": "https://www.uniprot.org/uniprotkb/I3L5U8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPESKKLFNIIILGIAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSMAIIYGVFSASNLITPSVVAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHTIGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDLDVNESAQNNMTKAVDAFKKSLRLCVTKEMLLLSVTTAYTGVEMTFFSGVYGTCIGAINKFGTEEKSLIGLSGIFIGIGEILGGSLFGLLSKNTRFGRNPVVLLGVLVHFLAFYLIFLNMPGDAPIAPVEGTDSSAYIKPSKEVAIFCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAVFKFVQSICAAVAFFYSNYLLLHWQLLVMVLFGFFGTISFFTVEWEAAAIVARGSDYRSI", "length": 449, "header": "tr|I3L5U8-1|I3L5U8_PIG Isoform 1 of UNC93-like protein MFSD11 OS=Sus scrofa OX=9823 GN=MFSD11 PE=3 SV=1 CANONICAL=I3L5U8-1" }, "isoforms": [ { "isoform_ac": "A0A286ZT57-1", "url": "https://www.uniprot.org/uniprotkb/I3L5U8/entry#A0A286ZT57-1", "sequence": { "sequence": "MSPESKKLFNIIILGIAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSMAIIYGVFSASNLITPSVVAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAESDRRTVFIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDLDVNESAQNNMTKAVDAFKKSLRLCVTKEMLLLSVTTAYTGVEMTFFSGVYGTCIGAINKFGTEEKSLIGLSGIFIGIGEILGGSLFGLLSKNTRFGRNPVVLLGVLVHFLAFYLIFLNMPGDAPIAPVEGTDSSAYIKPSKEVAIFCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAVFKFVQSICAAVAFFYSNYLLLHWQLLVMVLFGFFGTISFFTVEWEAAAIVARGSDYRSI", "length": 397, "header": "tr|A0A286ZT57-1|I3L5U8_PIG Computationally mapped isoform of UNC93-like protein MFSD11 OS=Sus scrofa OX=9823 GN=MFSD11 PE=3 SV=1 CANONICAL=I3L5U8-1" }, "locus": { "chromosome": "12", "start_pos": 4799602, "end_pos": 4777518, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061555.2", "url": "https://www.ensembl.org/id/ENSSSCT00000061555.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000034648.2", "url": "https://www.ensembl.org/id/ENSSSCP00000034648.2" } ] } }, { "isoform_ac": "I3L5U8-1", "url": "https://www.uniprot.org/uniprotkb/I3L5U8/entry#I3L5U8-1", "sequence": { "sequence": "MSPESKKLFNIIILGIAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSMAIIYGVFSASNLITPSVVAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHTIGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDLDVNESAQNNMTKAVDAFKKSLRLCVTKEMLLLSVTTAYTGVEMTFFSGVYGTCIGAINKFGTEEKSLIGLSGIFIGIGEILGGSLFGLLSKNTRFGRNPVVLLGVLVHFLAFYLIFLNMPGDAPIAPVEGTDSSAYIKPSKEVAIFCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAVFKFVQSICAAVAFFYSNYLLLHWQLLVMVLFGFFGTISFFTVEWEAAAIVARGSDYRSI", "length": 449, "header": "tr|I3L5U8-1|I3L5U8_PIG Isoform 1 of UNC93-like protein MFSD11 OS=Sus scrofa OX=9823 GN=MFSD11 PE=3 SV=1 CANONICAL=I3L5U8-1" }, "locus": { "chromosome": "12", "start_pos": 4799602, "end_pos": 4777518, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022358.3", "url": "https://www.ensembl.org/id/ENSSSCT00000022358.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019398.1", "url": "https://www.ensembl.org/id/ENSSSCP00000019398.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZT57", "url": "https://www.uniprot.org/uniprotkb/A0A286ZT57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100622284", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100622284", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1N2H3-1", "protein_name": "UNC93-like protein MFSD11", "gene_name": "MFSD11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSPESKKLFNIIILGIAFMFIFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSMAIIYGVFSASNLITPSVVAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHTIGRNSGIFWALLQFSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDLDINESPQSNMTKAVDAFKKSLKLCVTKEMLLLSITTAYTGLELTFFSGVYGTCIGAINKFGTEEKSLIGLSGIFIGIGEILGGSLFGLLSKNNRFGRNPVVLLGILVHFIAFYLIFLNMPGDAPIAPVEGTDSSAYIKPSKEIAIFCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAVFKFVQSICAAVAFFYSNYLLLHWQLLVMVIFGFFGTVSFFTVEWEAAAIVARGSDYRSI", "length": 449 }, "evidence": [ { "id": "I3L5U8", "url": "https://omabrowser.org/oma/group/I3L5U8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZEI8-1", "protein_name": "UNC93-like protein MFSD11", "gene_name": "Mfsd11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPESKKLFNIVILGVAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSLAIIYGVFSASNLITPSVVAIVGPQISMFVSGLFYSIYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHTIGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISENDRRTVFIALTVISLVGTVLFFLIRKPDPENVLGEEDESCDDQDMEATESAQNNVTKAVDAFKKSLRLCVTKEMLLLSVTTAYTGLELTFFSGVYGTCIGAVNKFGTEEKSLIGLSGIFIGIGEILGGSLFGLLSKNSRFGRNPVVLLGTLVHFVAFYLIFLNMPGDAPIAPVEGTNSSAYIRPSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAVFKFVQSICAAVAFFYSNYLLLHWQLLVMVIFGFFGTISFFAVEWDAAAIVARGSDYRSI", "length": 450 }, "evidence": [ { "id": "I3L5U8", "url": "https://omabrowser.org/oma/group/I3L5U8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BSA8-1", "protein_name": "UNC93-like protein MFSD11", "gene_name": "MFSD11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSPDSKKLFNVLILGISFMFIFTAFQTCGNIAQTVITNLNSTDFHGSGYTSMSIIYGVFSASNLISPSVVALVGPQLSMFISGIFYSLYIAVFIQPSTWSFYTASVFIGIAAAVLWTAQGNCLTINSDENTIGRNSGVFWALLQSSLFFGNLYIYFAWQGKTYISESDRRTVFIALTVISLVGTVLFFLIRKQEDTKAPGEEDSTNEIHGDSSSAQNKLMRAVDAFKRSIKLSFTKEILLLSVTTAYTGLELTFFSGVYGTCIGAVNRFGTEEKSLIGLSGIFIGVGEILGGGIFGLLSKKSRFGRNPIVMLGIAVHFIAFYLIFVNMPSNAPVAPMEGTDDIAYMIPSKEVAIFCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAIFKFVQSICAAVAYFYSNYFLLQWQLLIMVVVGFFGTITFFAVEWKAAALLARGSDYSSI", "length": 448 }, "evidence": [ { "id": "I3L5U8", "url": "https://omabrowser.org/oma/group/I3L5U8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O43934-1", "protein_name": "UNC93-like protein MFSD11", "gene_name": "MFSD11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSPESKKLFNIIILGVAFMFMFTAFQTCGNVAQTVIRSLNRTDFHGSGYTSMAIIYGVFSASNLITPSVVAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHSIGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDMEVNESAQNNLTKAVDAFKKSFKLCVTKEMLLLSITTAYTGLELTFFSGVYGTCIGATNKFGAEEKSLIGLSGIFIGIGEILGGSLFGLLSKNNRFGRNPVVLLGILVHFIAFYLIFLNMPGDAPIAPVKGTDSSAYIKSSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAIFKFVQSICAAVAFFYSNYLLLHWQLLVMVIFGFFGTISFFTVEWEAAAFVARGSDYRSI", "length": 449 }, "evidence": [ { "id": "I3L5U8", "url": "https://omabrowser.org/oma/group/I3L5U8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54E68-1", "protein_name": "UNC93-like protein MFSD11", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNKEDLLQTPLLNDHHHQEENDYYSHSKSIQNKNNNKINIIILGLCFCILFSAFSPTQILQTTINQNLGYYTLAVLYSSLSISNFISPFIVSKFGEKISLIIGTLSYAIYIGSNIYVTQPSLYISSILVGFGGAILWNAQGSLIIKYSTEETIGANTGLFFALFQTDQIIGNIGSATLINKAGLSNSILFTIFMGISLMPIIGFLFLKCPITPKIKKTIKSINIQDEETKGNQENHDDDDLSIKNIFKSIIILFKDKPIQLLIPSLLYSGISQTFFFGVFPSLIGVEWVGYVMSVFGFFDALSSFILGKLSFKIGRKILILISTISSIIGTVLIILVNQSKIIYFSINNNNNYGEYKILCYFIGSALLGFSDAGFNTQLYSLLGVLYPTNGEAAVGVFKFVQSTATAVAFIYGPYASLFENVFVLDCLVIISCVFFIFADNFSKSV", "length": 447 }, "evidence": [ { "id": "I3L5U8", "url": "https://omabrowser.org/oma/group/I3L5U8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BJ51-1", "protein_name": "UNC93-like protein MFSD11", "gene_name": "Mfsd11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSPESKKLFNIVILGVAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSLAIIYGVFSASNLITPSVVAIVGPQISMFVSGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDEHTIGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISEHDRRTVFIALTVISLVGTVLFFLIRKPDPENVLGEEESCDDQDMEATESAQNNVTKAVDAFKKSLRLCVTREMLLLSVTTAYTGLELTFFSGVYGTCIGAVNKFGTEEKSLIGLSGIFIGIGEILGGSLFGLLSKNSRFGRNPVVLLGTLVHFVAFYLIFLNMPGDAPIAPVEGTNSIAYIRPSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPAFAVFKFVQSICAAVAFFYSNYLLLHWQLLVMVIFGFFGTISFFAVEWDAAAIVARGSDYRSI", "length": 449 }, "evidence": [ { "id": "I3L5U8", "url": "https://omabrowser.org/oma/group/I3L5U8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VG64-1", "protein_name": "UNC93-like protein MFSD11", "gene_name": "Dmel\\CG18549", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDFKFLMILILGFGFMFVFTAFQTMCNIEKTILDSISQEDDTFKGEGYTSLAIIYLFFSLSNWLAPSFISFTGPRVAMVVGALTYTAFMITFMFPSTVLLYVGSAVLGLGASITWTGQGTYLARCSESSTISRNSGVFWALLQCSMFIGNLFVYYQFQDKTRIDKETRNLVIGVLTVIAVLGIVFLAALRFMADNAEHDNELEQKHTGCGQAIYALKSAGQLFLTKKMLLLSLAFFYTGLELSFFSGVFGSAIGFTTKIAETPKEIVGLVGICIGAGEVFGGGLFGILGNKTTRYGRDPIVIAGYVMHMAAFFMTFINLPNSAPFKDTTDISYLDPPRASIALVCAFLLGLGDACFNTQIYSMLGGEYVNNAVGAFALFKFTQSVAAAISFFYSSHFGLYVQLGILVVMGTIGTIAFVFVEWGFKRQHREQEALEK", "length": 436 }, "evidence": [ { "id": "I3L5U8", "url": "https://omabrowser.org/oma/group/I3L5U8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "I3L5U8", "url": "https://www.uniprot.org/uniprotkb/I3L5U8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 213, "end_pos": 215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5U8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 449, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5U8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5U8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 213, "end_pos": 215 }, { "start_pos": 219, "end_pos": 221 }, { "start_pos": 40, "end_pos": 42 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS76-1", "uniprot_ac": "F1SS76", "uniprot_id": "F1SS76_PIG", "mass": { "chemical_mass": 46278.0, "monoisotopic_mass": 46278.0 }, "refseq": { "ac": "XP_005655456", "name": "pleckstrin homology domain-containing family O member 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655456" }, "gene_names": [ { "name": "PLEKHO1", "type": "recommended", "evidence": [ { "id": "F1SS76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS76" } ] }, { "name": "PLEKHO1", "type": "synonym", "evidence": [ { "id": "XP_005655456", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655456" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain-containing family O member 1", "type": "recommended", "evidence": [ { "id": "F1SS76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS76/entry#names_and_taxonomy" } ] }, { "name": "pleckstrin homology domain-containing family O member 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005655456", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655456" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS76", "url": "https://www.uniprot.org/uniprotkb/F1SS76" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLEKHO1", "url": "https://www.uniprot.org/uniprotkb/F1SS76", "locus": { "chromosome": "4", "start_pos": 98923996, "end_pos": 98934189, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000022784", "url": "https://www.ensembl.org/id/ENSSSCG00000022784" } ] } } ], "crossref": [ { "id": "F1SS76", "url": "https://alphafold.ebi.ac.uk/entry/F1SS76", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022784", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022784", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13317", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13317", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152184", "url": "https://www.ncbi.nlm.nih.gov/gene/100152184", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "VQPEKVG", "url": "https://omabrowser.org/oma/group/VQPEKVG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SS76", "url": "https://www.orthodb.org/?gene=F1SS76", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15871", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15871", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15871:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15871:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005655456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655456", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZU67", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU67", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZU67-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU67-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS76", "url": "https://www.uniprot.org/uniprotkb/F1SS76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS76-1", "url": "https://www.uniprot.org/uniprotkb/F1SS76-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGLPRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLQAEDPPTPIPPHPGQLSRIQDLVARKLEKTQELLAEVQGLGDGKRKAKDPPRSPPDSESEQLLLETERLLGEASSNWSQAKRVLQEVRELRDLYRQMDLQTPDSHLRQTTQHSQYRKSLM", "length": 409, "header": "tr|F1SS76-1|F1SS76_PIG Isoform 1 of Pleckstrin homology domain-containing family O member 1 OS=Sus scrofa OX=9823 GN=PLEKHO1 PE=4 SV=1 CANONICAL=F1SS76-1" }, "isoforms": [ { "isoform_ac": "A0A286ZU67-1", "url": "https://www.uniprot.org/uniprotkb/F1SS76/entry#A0A286ZU67-1", "sequence": { "sequence": "MMKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEASTSTSDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGLPRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLQAEDPPTPIPPHPGQLSRIQDLVARKLEKTQELLAEVQGLGDGKRKAKDPPRSPPDSESEQLLLETERLLGEASSNWSQAKRVLQEVRELRDLYRQMDLQTPDSHLRQTTQHSQYRKSLM", "length": 375, "header": "tr|A0A286ZU67-1|F1SS76_PIG Computationally mapped isoform of Pleckstrin homology domain-containing family O member 1 OS=Sus scrofa OX=9823 GN=PLEKHO1 PE=4 SV=1 CANONICAL=F1SS76-1" }, "locus": { "chromosome": "4", "start_pos": 98934044, "end_pos": 98924677, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066323.1", "url": "https://www.ensembl.org/id/ENSSSCT00000066323.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035209.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035209.1" } ] } }, { "isoform_ac": "F1SS76-1", "url": "https://www.uniprot.org/uniprotkb/F1SS76/entry#F1SS76-1", "sequence": { "sequence": "MMKKNNSTKRGPQDGNHQSAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDLIQEEDPSPEESTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRAGGLPRRWEKPDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAAPARALQLQAEDPPTPIPPHPGQLSRIQDLVARKLEKTQELLAEVQGLGDGKRKAKDPPRSPPDSESEQLLLETERLLGEASSNWSQAKRVLQEVRELRDLYRQMDLQTPDSHLRQTTQHSQYRKSLM", "length": 409, "header": "tr|F1SS76-1|F1SS76_PIG Isoform 1 of Pleckstrin homology domain-containing family O member 1 OS=Sus scrofa OX=9823 GN=PLEKHO1 PE=4 SV=1 CANONICAL=F1SS76-1" }, "locus": { "chromosome": "4", "start_pos": 98934044, "end_pos": 98924677, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025002.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025002.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026701.1", "url": "https://www.ensembl.org/id/ENSSSCP00000026701.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZU67", "url": "https://www.uniprot.org/uniprotkb/A0A286ZU67" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F1MIZ2-1", "protein_name": "Pleckstrin homology domain-containing family O member 1", "gene_name": "PLEKHO1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MMKKNNSTKRGPQDGNHQCAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEKESWINALNSAITRAKNRVLDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDLIQEEDPSPEEPTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSSDRASGLPRLWEKPDKGATYTPQAPKKLTATEKSRCASLEEILSQRDAVPAHTLQQRAEDPPTPIPHAPGQLSRIQDLVARKLEKTQELLAEVQGLGDGKRKAKEPPRSPPDSESEQLLLETERLLGEASSNWSQAKRVLQEVRELRDLYRQMDLQTPDSHLRQTTQHSQYRKSLM", "length": 409 }, "evidence": [ { "id": "F1SS76", "url": "https://omabrowser.org/oma/group/F1SS76/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q53GL0-1", "protein_name": "Pleckstrin homology domain-containing family O member 1", "gene_name": "PLEKHO1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MMKKNNSAKRGPQDGNQQPAPPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYISEKEVKDEKNIQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLAHSKQPGNTAPNLIFLAVSPEEKESWINALNSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDLIQEEDPSPEEPTSCAESFRVDLDKSVAQLAGSRRRADSDRIQPSADRASSLSRPWEKTDKGATYTPQAPKKLTPTEKGRCASLEEILSQRDAASARTLQLRAEEPPTPALPNPGQLSRIQDLVARKLEETQELLAEVQGLGDGKRKAKDPPRSPPDSESEQLLLETERLLGEASSNWSQAKRVLQEVRELRDLYRQMDLQTPDSHLRQTTPHSQYRKSLM", "length": 409 }, "evidence": [ { "id": "F1SS76", "url": "https://omabrowser.org/oma/group/F1SS76/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JIY0-1", "protein_name": "Pleckstrin homology domain-containing family O member 1", "gene_name": "Plekho1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKSGSGKRGPPDGNHQSAAPEKVGWVRKFCGKGIFREIWKNRYVVLKGDQLYVSEKEVKDEKNSQEVFDLSDYEKCEELRKSKSRSKKNHSKFTLARCRQPGTTAPNLIFLAVSPEEKESWINALSSAITRAKNRILDEVTVEEDSYLAHPTRDRAKIQHSRRPPTRGHLMAVASTSTSDGMLTLDLIQEEDPSPEEPASCAESFRVDLDKSVAQLAGSRRRADSDRIQPSSQRASSLSRPWEKPDKGAPYTPQALKKFPSTEKSRCASLEEILSQRDTAPARPLHLQAEESLPPVPAQPGQLSRIQDLVARKLEKTQELLAEVQGLGDGKRKAKDPPQSPPDSESEQLLLETERLLGEASSNWSQAKRVLQEVRELRDLYRQMDLQTPDSHLRQTSQHSQYRKSLM", "length": 408 }, "evidence": [ { "id": "F1SS76", "url": "https://omabrowser.org/oma/group/F1SS76/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SS76", "url": "https://www.uniprot.org/uniprotkb/F1SS76" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SS76", "url": "https://www.uniprot.org/uniprotkb/F1SS76" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SS76", "url": "https://www.uniprot.org/uniprotkb/F1SS76" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SS76", "url": "https://www.uniprot.org/uniprotkb/F1SS76" } ], "pmid": "" }, { "name": "ruffle membrane", "id": "GO:0032587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032587", "evidence": [ { "database": "UniProtKB", "id": "F1SS76", "url": "https://www.uniprot.org/uniprotkb/F1SS76" } ], "pmid": "" }, { "name": "muscle cell projection membrane", "id": "GO:0036195", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036195", "evidence": [ { "database": "UniProtKB", "id": "F1SS76", "url": "https://www.uniprot.org/uniprotkb/F1SS76" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of myoblast fusion", "id": "GO:1901739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901739", "evidence": [ { "database": "UniProtKB", "id": "F1SS76", "url": "https://www.uniprot.org/uniprotkb/F1SS76" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SS76-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 409, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SS76-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SS76" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS76", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS76" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 21, "end_pos": 132, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 365, "end_pos": 367 }, { "start_pos": 5, "end_pos": 7 }, { "start_pos": 6, "end_pos": 8 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L6B5-1", "uniprot_ac": "I3L6B5", "uniprot_id": "I3L6B5_PIG", "mass": { "chemical_mass": 56199.0, "monoisotopic_mass": 56199.0 }, "refseq": { "ac": "XP_020922673", "name": "keratin, type I cytoskeletal 24", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922673" }, "gene_names": [ { "name": "KRT24", "type": "recommended", "evidence": [ { "id": "I3L6B5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ] }, { "name": "KRT24", "type": "synonym", "evidence": [ { "id": "XP_020922673", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922673" } ] } ], "protein_names": [ { "name": "Keratin 24", "type": "synonym", "evidence": [ { "id": "I3L6B5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6B5/entry#names_and_taxonomy" } ] }, { "name": "keratin, type I cytoskeletal 24", "type": "synonym", "evidence": [ { "id": "XP_020922673", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922673" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRT24", "url": "https://www.uniprot.org/uniprotkb/I3L6B5", "locus": { "chromosome": "12", "start_pos": 21736525, "end_pos": 21731599, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017465", "url": "https://www.ensembl.org/id/ENSSSCG00000017465" } ] } } ], "crossref": [ { "id": "I3L6B5", "url": "https://alphafold.ebi.ac.uk/entry/I3L6B5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017465", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017465", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524169", "url": "https://www.ncbi.nlm.nih.gov/gene/100524169", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524169", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524169", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SGSTNMG", "url": "https://omabrowser.org/oma/group/SGSTNMG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L6B5", "url": "https://www.orthodb.org/?gene=I3L6B5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239:SF207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239:SF207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020922673", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020922673", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZVQ5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZVQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBQ6", "url": "https://www.uniprot.org/uniprotkb/A0A287BBQ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BBQ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BBQ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBJ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QBJ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBJ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXF8", "url": "https://www.uniprot.org/uniprotkb/F1RXF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1RXF8-1", "url": "https://www.uniprot.org/uniprotkb/F1RXF8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6B5-1", "url": "https://www.uniprot.org/uniprotkb/I3L6B5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSCSTRVSSSRARGSSSVRVSAGGSSFSSGSRCGLGAGSAPGFRGGAGSCGLSGGSSSGFGGSFRGGFGSCSVAGGFGGASGSVAGYGGGSGFGGGSGFGGGSGFGGGSGFGGGSGFGGGASGGFYSYGGGLGGGVGDGGLFSGGEKQTMQNLNDRLANYLDKVRALEEANADLEHKIKEWYDKFGPGSRDVGSGRDYSKYYPIIDDLRKQITAATIENAGIVLQIDNARLAADDFRLKYENELYLRQSVEADINGLRKVLDDLTMTRSDLEMQMENLVEELTYLKKNHEEEMKSMQGSSGGDVTVEMNAAPGTDLTKLLNDMRAQYEELAEQNRREAEEQFKKQSASLQAQISTDAGAASSAKNEITELKRTLQALEIELQSQLVMKSSLEGTLADTEAGYMAQLSQIQIQISSLEEQICQIRGETECQNAEYEQLLDIKTRLEMEIETYRRLLDGEGGGSGFGGCDFRNSGSRNTGSRNIGSRDSSVSGDSRSGSCSVQGRDPSKSRVTKTIVEEVVDGKVVSSQVSNISEVKLK", "length": 537, "header": "tr|I3L6B5-1|I3L6B5_PIG Isoform 1 of Keratin 24 OS=Sus scrofa OX=9823 GN=KRT24 PE=1 SV=2 CANONICAL=I3L6B5-1" }, "isoforms": [ { "isoform_ac": "A0A286ZVQ5-1", "url": "https://www.uniprot.org/uniprotkb/I3L6B5/entry#A0A286ZVQ5-1", "sequence": { "sequence": "KAACKQALHRPLSSSPGQAKPLRGHHVLLNSRVLLQGQRHGGFYSYGGGLGGGVGDGGLFSGGEKQTMQNLNDRLANYLDKVRALEEANADLEHKIKEWYDKFGPGSRDVGSGRDYSKYYPIIDDLRKQITAATIENAGIVLQIDNARLAADDFRLKYENELYLRQSVEADINGLRKVLDDLTMTRSDLEMQMENLVEELTYLKKNHEEVGTQSMQGSSGGDVTVEMNAAPGTDLTKLLNDMRAQYEELAEQNRREAEEQFKKQVDLHPEPLSPRSAKNEITELKRTLQALEIELQSQLVMKSSLEGTLADTEAGYMAQLSQIQIQISSLEEQICQIRGETECQNAEYEQLLDIKTRLEMEIETYRRLLDGEGGKYIPCFTSYHVNMVYPSKSRVTKTIVEEVVDGKVVSSQVSNISEVKLK", "length": 422, "header": "tr|A0A286ZVQ5-1|I3L6B5_PIG Computationally mapped isoform of Keratin 24 OS=Sus scrofa OX=9823 GN=KRT24 PE=1 SV=2 CANONICAL=I3L6B5-1" }, "locus": { "chromosome": "12", "start_pos": 21736212, "end_pos": 21731741, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062930.2", "url": "https://www.ensembl.org/id/ENSSSCT00000062930.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035726.2", "url": "https://www.ensembl.org/id/ENSSSCP00000035726.2" } ] } }, { "isoform_ac": "A0A287BBQ6-1", "url": "https://www.uniprot.org/uniprotkb/I3L6B5/entry#A0A287BBQ6-1", "sequence": { "sequence": "TQLQKKSQYSVGSGFGGGSGFGGGSGFGGGSGFGGGSGFGGGASGGFYSYGGGLGGGVGDGGLFSGGEKQTMQNLNDRLANYLDKVRALEEANADLEHKIKEWYDKFGPGSRDVGSGRDYSKYYPIIDDLRKQITAATIENAGIVLQIDNARLAADDFRLKYENELYLRQSVEADINGLRKVLDDLTMTRSDLEMQMENLVEELTYLKKNHEEEMKSMQGSSGGDVTVEMNAAPGTDLTKLLNDMRAQYEELAEQNRREAEEQFKKQSASLQAQISTDAGAASSAKNEITELKRTLQALEIELQSQLVMKSSLEGTLADTEAGYMAQLSQIQIQISSLEEQICQIRGETECQNAEYEQLLDIKTRLEMEIETYRRLLDGEGG", "length": 382, "header": "tr|A0A287BBQ6-1|I3L6B5_PIG Computationally mapped isoform of Keratin 24 OS=Sus scrofa OX=9823 GN=KRT24 PE=1 SV=1 CANONICAL=I3L6B5-1" }, "locus": { "chromosome": "12", "start_pos": 21735538, "end_pos": 21731599, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048159.1", "url": "https://www.ensembl.org/id/ENSSSCT00000048159.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000053548.1", "url": "https://www.ensembl.org/id/ENSSSCP00000053548.1" } ] } }, { "isoform_ac": "A0A5G2QBJ1-1", "url": "https://www.uniprot.org/uniprotkb/I3L6B5/entry#A0A5G2QBJ1-1", "sequence": { "sequence": "MSCSTRVSSSRARGSSSVRVSAGGSSFSSGSRCGLGAGSAPGFRGGAGSCGLSGGSSSGFGGSFRGGFGSCSVAGGFGGASGSVAGYGGGSGFGGGSGFGGGSGFGGGSGFGGGSGFGGGASGGFYSYGGGLGGGVGDGGLFSGGEKQTMQNLNDRLANYLDKVRALEEANADLEHKIKEWYDKFGPGSRDVGSGRDYSKYYPIIDDLRKQITAATIENAGIVLQIDNARLAADDFRLKYENELYLRQSVEADINGLRKVLDDLTMTRSDLEMQMENLVEELTYLKKNHEEEMKSMQGSSGGDVTVEMNAAPGTDLTKLLNDMRAQYEELAEQNRREAEEQFKKQSASLQAQISTDAGAASSAKNEITELKRTLQALEIELQSQLVMKSSLEGTLADTEAGYMAQLSQIQIQISSLEEQICQIRGETECQNAEYEQLLDIKTRLEMEIETYRLTQSDQKIAGSRNIGSRDSSVSGDSRSGSCSVQGRDPSKSRVTKTIVEEVVDGKVVSSQVSNISEVKLK", "length": 521, "header": "tr|A0A5G2QBJ1-1|I3L6B5_PIG Computationally mapped isoform of Keratin 24 OS=Sus scrofa OX=9823 GN=KRT24 PE=1 SV=1 CANONICAL=I3L6B5-1" }, "locus": { "chromosome": "12", "start_pos": 21736212, "end_pos": 21731817, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083234.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083234.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060842.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060842.1" } ] } }, { "isoform_ac": "F1RXF8-1", "url": "https://www.uniprot.org/uniprotkb/I3L6B5/entry#F1RXF8-1", "sequence": { "sequence": "MSCSTRVSSSRARGSSSVRVSAGGSSFSSGSRCGLGAGSAPGFRGGAGSCGLSGGSSSGFGGSFRGGFGSCSVAGGFGGASGSVAGYGGGSGFGGGSGFGGGSGFGGGSGFGGGSGFGGGASGGFYSYGGGLGGGVGDGGLFSGGEKQTMQNLNDRLANYLDKVRALEEANADLEHKIKEWYDKFGPGSRDVGSGRDYSKYYPIIDDLRKQITAATIENAGIVLQIDNARLAADDFRLKYENELYLRQSVEADINGLRKVLDDLTMTRSDLEMQMENLVEELTYLKKNHEEEMKSMQGSSGGDVTVEMNAAPGTDLTKLLNDMRAQYEELAEQNRREAEEQFKKQSASLQAQISTDAGAASSAKNEITELKRTLQALEIELQSQLVMKSSLEGTLADTEAGYMAQLSQIQIQISSLEEQICQIRGETECQNAEYEQLLDIKTRLEMEIETYRRLLDGEGGNSGSRNTGSRNIGSRDSSVSDPSKSRVTKTIVEEVVDGKVVSSQVKMKLSVPI", "length": 513, "header": "tr|F1RXF8-1|I3L6B5_PIG Computationally mapped isoform of Keratin 24 OS=Sus scrofa OX=9823 GN=KRT24 PE=1 SV=3 CANONICAL=I3L6B5-1" }, "locus": { "chromosome": "12", "start_pos": 21736522, "end_pos": 21731817, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019013.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019013.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018508.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018508.3" } ] } }, { "isoform_ac": "I3L6B5-1", "url": "https://www.uniprot.org/uniprotkb/I3L6B5/entry#I3L6B5-1", "sequence": { "sequence": "MSCSTRVSSSRARGSSSVRVSAGGSSFSSGSRCGLGAGSAPGFRGGAGSCGLSGGSSSGFGGSFRGGFGSCSVAGGFGGASGSVAGYGGGSGFGGGSGFGGGSGFGGGSGFGGGSGFGGGASGGFYSYGGGLGGGVGDGGLFSGGEKQTMQNLNDRLANYLDKVRALEEANADLEHKIKEWYDKFGPGSRDVGSGRDYSKYYPIIDDLRKQITAATIENAGIVLQIDNARLAADDFRLKYENELYLRQSVEADINGLRKVLDDLTMTRSDLEMQMENLVEELTYLKKNHEEEMKSMQGSSGGDVTVEMNAAPGTDLTKLLNDMRAQYEELAEQNRREAEEQFKKQSASLQAQISTDAGAASSAKNEITELKRTLQALEIELQSQLVMKSSLEGTLADTEAGYMAQLSQIQIQISSLEEQICQIRGETECQNAEYEQLLDIKTRLEMEIETYRRLLDGEGGGSGFGGCDFRNSGSRNTGSRNIGSRDSSVSGDSRSGSCSVQGRDPSKSRVTKTIVEEVVDGKVVSSQVSNISEVKLK", "length": 537, "header": "tr|I3L6B5-1|I3L6B5_PIG Isoform 1 of Keratin 24 OS=Sus scrofa OX=9823 GN=KRT24 PE=1 SV=2 CANONICAL=I3L6B5-1" }, "locus": { "chromosome": "12", "start_pos": 21736212, "end_pos": 21731817, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030999.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030999.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019566.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019566.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QBJ1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QBJ1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524169", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524169", "resource": "KEGG Pathway" }, { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A1L317-1", "protein_name": "Keratin, type I cytoskeletal 24", "gene_name": "Krt24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFCSAQKGSCSSRVSSSGAVGSRGCTGGSSFGGGSSCGLGGGSAWGFQGSSNSWSLSGGSKGSMGGGFGSCSVRGGFGAASSYGGGSGFGGSSGFGGGSGFGGGSGFGGGSSGGFSSYGGSMGCGLGGVSGYDGGLLSGSEKQTMQDLNDRLANYLDKVRALEEANTDLECKIKDWYGKHGSVKGGSGRDYSQYYSIIEDLKKQILSATCENARMTLQIDNARLAADDFRMKYEHELCLRECLEADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCMQGSSGGDVTVEMNAAPGVDLTKLLNDMRAQYEAMAEQNRQEAERQFNERSASLQAQISSDAGEANCARSEVMELKRTVQTLEIELQSQLALKCSLEGTLADTEAGYVAQLSGIQAQISSLEEQLSQIRAETQCQSAEYECLLNIKTRLEQEIETYRRLLNGDGGGCDYRNLVSKNVVLSDSGSCAGQGKDPSKTRVTKTIIEEVVDGRVVSSQVSNISEVKIK", "length": 512 }, "evidence": [ { "id": "I3L6B5", "url": "https://omabrowser.org/oma/group/I3L6B5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1MFW9-1", "protein_name": "Keratin 24", "gene_name": "KRT24", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSCSSRVSSSRAGGSSSVRVSAGGSSFSSGSRIGLGGGSARGFRGGAGSYGLSGGSSGGFGGGFGSCSVGGGFGGASGSGIGFGGGSSFGGGSSFGGGSSFGGGSSFGGGASGGFYSYAGGVGGGVGGGLGDGGLFSGGEKQAMQNLNDRLANYLDKVRALEEANADLENKIKEWYEKFGPRSGDGGAGRDYSKYYPVIEDVRTQIITATIENAGIVLQIDNARLAADDFRLKYENELHLRQTVEADINGLRKVLDDLTMTRSDLEMQIESLTEELAYLKKNHEEEMKSMQGSSRGDVTVEMNAAPGTDLTKLLNDMRAQYEELAEQNRREAEEQFNKQSASLQAQISTDAGAANSAKNEITELKRTLQALEIELQSQLAMKSSLEGTLADTEANYMVQLSQIQMQISSLEEQICQIRGETECQNAEYEQLLDIKTRLEMEIETYRRLLDGEGGGSGFGGSDYRRSGSRNMGSRDSSMSDGSRSGTSVQGRDPSKSRVTKTIVEEVVDGKVISSQVSNVSEVKLK", "length": 525 }, "evidence": [ { "id": "I3L6B5", "url": "https://omabrowser.org/oma/group/I3L6B5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q2M2I5-1", "protein_name": "Keratin, type I cytoskeletal 24", "gene_name": "KRT24", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSCSSRASSSRAGGSSSARVSAGGSSFSSGSRCGLGGSSAQGFRGGASSCSLSGGSSGAFGGSFGGGFGSCSVGGGFGGASGSGTGFGGGSSFGGVSGFGRGSGFCGSSRFSSGATGGFYSYGGGMGGGVGDGGLFSGGEKQTMQNLNDRLANYLDKVRALEEANTDLENKIKEWYDKYGPGSGDGGSGRDYSKYYSIIEDLRNQIIAATVENAGIILHIDNARLAADDFRLKYENELCLRQSVEADINGLRKVLDDLTMTRSDLEMQIESFTEELAYLRKNHEEEMKNMQGSSGGEVTVEMNAAPGTDLTKLLNDMRAQYEELAEQNRREAEERFNKQSASLQAQISTDAGAATSAKNEITELKRTLQALEIELQSQLAMKSSLEGTLADTEAGYVAQLSEIQTQISALEEEICQIWGETKCQNAEYKQLLDIKTRLEVEIETYRRLLDGEGGGSSFAEFGGRNSGSVNMGSRDLVSGDSRSGSCSGQGRDSSKTRVTKTIVEELVDGKVVSSQVSSISEVKVK", "length": 525 }, "evidence": [ { "id": "I3L6B5", "url": "https://omabrowser.org/oma/group/I3L6B5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6IFX1-1", "protein_name": "Keratin, type I cytoskeletal 24", "gene_name": "Krt24", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFCSAQKGSCSSRVSSSGAVGSRGCTGSGSSYGLGGGSAWGFQGSSSSWGLSGGSKGSIGGGFSSCSVRGGFGAGSSFGGGSGFGGGSSGGVSSYGGSLGGGLGGIGGYDGGLLSGSEKQTMQGLNDRLANYLDKVRALEEANTDLETKIKDWYGRHGSGKDGPGRDYSQYCSVIEDLKNQIISATCENARLALQIDNARLAADDFRMKYEHELCLRQSLEADINGLRKVLDEMTMTRCDLEMQIEGLTEELVFLRKNHEEEMKCLQGSSGGDVTVEMNATPGTDLTKLLNDMRAQYEAMAEQNRQEAEKQFNERSACLQAQISTDAGAANCAKSEVMELRRTVQTLEIELQSQLALKCSLEGTLADTEARYVAQLSGIQTQISSLEEQLSQIRGETQCQSAEYECLLDIKTRLEQEIETYRRLLNGDGGGCDYRNLVSRQVVLNDSNFGSCSGQEKDPSKTRVTKTIIEEVVDGKVVSSQVSNISEVKIK", "length": 491 }, "evidence": [ { "id": "I3L6B5", "url": "https://omabrowser.org/oma/group/I3L6B5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "pmid": "" }, { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "pmid": "" }, { "name": "morphogenesis of an epithelium", "id": "GO:0002009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002009", "evidence": [ { "database": "UniProtKB", "id": "I3L6B5", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 530, "end_pos": 532, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L6B5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 537, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L6B5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L6B5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L6B5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6B5" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 146, "end_pos": 462, "start_aa": "Glu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 530, "end_pos": 532 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L7N4-1", "uniprot_ac": "I3L7N4", "uniprot_id": "I3L7N4_PIG", "mass": { "chemical_mass": 56747.0, "monoisotopic_mass": 56747.0 }, "refseq": {}, "gene_names": [ { "name": "LOC110255214", "type": "recommended", "evidence": [ { "id": "I3L7N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7N4" } ] } ], "protein_names": [ { "name": "Glycosyltransferase 2-like domain-containing protein", "type": "recommended", "evidence": [ { "id": "I3L7N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7N4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L7N4", "url": "https://www.uniprot.org/uniprotkb/I3L7N4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110255214", "url": "https://www.uniprot.org/uniprotkb/I3L7N4", "locus": {} } ], "crossref": [ { "id": "I3L7N4", "url": "https://alphafold.ebi.ac.uk/entry/I3L7N4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030269", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030269", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00761", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00761", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15046", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15046", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15046:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15046:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00535", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00535", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-446203", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446203", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9037629", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9037629", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A286ZVY5", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZVY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZVY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7N4", "url": "https://www.uniprot.org/uniprotkb/I3L7N4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7N4-1", "url": "https://www.uniprot.org/uniprotkb/I3L7N4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SPRCLSILKISMVLLVLSVGLFMFRSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEKHVRSLFTYSGIWLFPKNQCQCDAFGHQGSYNLEDAYDPRDLPAVNLRRQAELEHFQRREGLPRPPPLLAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGPLNTLADVPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVTIRYPVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKITDSHVEYYAMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELDVVGGRVIENTFQFKLLLEQGKNGDCLHRQSGFFRPVDGFPGCVVTSGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELAALEGNYSRYRANTKAQIKFKLALHYFKNHLQCAT", "length": 502, "header": "tr|I3L7N4-1|I3L7N4_PIG Isoform 1 of Glycosyltransferase 2-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255214 PE=3 SV=3 CANONICAL=I3L7N4-1" }, "isoforms": [ { "isoform_ac": "A0A286ZVY5-1", "url": "https://www.uniprot.org/uniprotkb/I3L7N4/entry#A0A286ZVY5-1", "sequence": { "sequence": "MTSYSPRCLSILKISMVLLVLSVGLFMFRSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEKHVRSLFTYSGIWLFPKNQCQCDAFGHQGSYNLEDAYDPRDLPAVNLRRQAELEHFQRREGLPRPPPLLAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGPLNTLADVPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVTIRYPVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKITDSHVEYYAMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELDVVGGRVIENTFQFKLLLEQGKNGDCLHRQSGFFRPVDGFPGCVVTSGVVNFFLAHTERLQRVGFDPRLQRVAHSGGEAGRARSELGCALASEVSF", "length": 459, "header": "tr|A0A286ZVY5-1|I3L7N4_PIG Computationally mapped isoform of Glycosyltransferase 2-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255214 PE=3 SV=1 CANONICAL=I3L7N4-1" }, "locus": { "chromosome": "12", "start_pos": 25300054, "end_pos": 25270303, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046908.1", "url": "https://www.ensembl.org/id/ENSSSCT00000046908.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035658.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035658.1" } ] } }, { "isoform_ac": "A0A5G2QWL0-1", "url": "https://www.uniprot.org/uniprotkb/I3L7N4/entry#A0A5G2QWL0-1", "sequence": { "sequence": "MVSFAVPRCLSILKISMVLLVLSVGLFMFRSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEKHVRSLFTYSGIWLFPKNQCQCDAFGHQGSYNLEDAYDPRDLPAVNLRRQAELEHFQRREGLPRPPPLLAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGPLNTLADVPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVRILEDRALTPTLSCPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKITDSHVEYYAMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELDVVGGRVIENTFQFKLLLEQGKNGDCLHRQSGFFRPVDGFPGCVVTSGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELAALEGNYSRYRANTKAQIKFKLALHYFKNHLQCAT", "length": 494, "header": "tr|A0A5G2QWL0-1|I3L7N4_PIG Computationally mapped isoform of Glycosyltransferase 2-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255214 PE=3 SV=1 CANONICAL=I3L7N4-1" }, "locus": { "chromosome": "12", "start_pos": 25300982, "end_pos": 25280929, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000088117.1", "url": "https://www.ensembl.org/id/ENSSSCT00000088117.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062569.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062569.1" } ] } }, { "isoform_ac": "I3L7N4-1", "url": "https://www.uniprot.org/uniprotkb/I3L7N4/entry#I3L7N4-1", "sequence": { "sequence": "SPRCLSILKISMVLLVLSVGLFMFRSVFLDTDFSLLNSPIPSPTLDAQTLKLLPEKHVRSLFTYSGIWLFPKNQCQCDAFGHQGSYNLEDAYDPRDLPAVNLRRQAELEHFQRREGLPRPPPLLAQPNLPFGYPVHGVEVMPLHTIPIPGLRFEGPDAPIYEVTLTASLGPLNTLADVPDNVVKGRGQKQLNILTSSRELLNFILQHVTYTSTEYHLHRVDVVSLESKSSVAKFPVTIRYPVMPKLYDPGPERKLRDLVTIATKTFLRPHKLMTMLRSVREYYPDLTVIVADDSKEPLKITDSHVEYYAMPFGKGWFAGRNLAISQVTTKYVLWVDDDFIFNSKTRIEALVDVLEKTELDVVGGRVIENTFQFKLLLEQGKNGDCLHRQSGFFRPVDGFPGCVVTSGVVNFFLAHTERLQRVGFDPRLQRVAHSEFFIDGLGSLLVGSCPHVIIGHQPHLPVMDPELAALEGNYSRYRANTKAQIKFKLALHYFKNHLQCAT", "length": 502, "header": "tr|I3L7N4-1|I3L7N4_PIG Isoform 1 of Glycosyltransferase 2-like domain-containing protein OS=Sus scrofa OX=9823 GN=LOC110255214 PE=3 SV=3 CANONICAL=I3L7N4-1" }, "locus": { "chromosome": "12", "start_pos": 25300982, "end_pos": 25281152, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032589.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032589.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020040.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020040.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWL0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWL0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-446203", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446203", "resource": "Reactome", "description": "Asparagine N-linked glycosylation" }, { "id": "R-SSC-9037629", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9037629", "resource": "Reactome", "description": "Lewis blood group biosynthesis" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "I3L7N4", "url": "https://www.uniprot.org/uniprotkb/I3L7N4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "carbohydrate derivative metabolic process", "id": "GO:1901135", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901135", "evidence": [ { "database": "UniProtKB", "id": "I3L7N4", "url": "https://www.uniprot.org/uniprotkb/I3L7N4" } ], "pmid": "" }, { "name": "UDP-N-acetylglucosamine metabolic process", "id": "GO:0006047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006047", "evidence": [ { "database": "UniProtKB", "id": "I3L7N4", "url": "https://www.uniprot.org/uniprotkb/I3L7N4" } ], "pmid": "" }, { "name": "UDP-N-acetylgalactosamine metabolic process", "id": "GO:0019276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019276", "evidence": [ { "database": "UniProtKB", "id": "I3L7N4", "url": "https://www.uniprot.org/uniprotkb/I3L7N4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "hexosyltransferase activity", "id": "GO:0016758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016758", "evidence": [ { "database": "UniProtKB", "id": "I3L7N4", "url": "https://www.uniprot.org/uniprotkb/I3L7N4" } ], "pmid": "" }, { "name": "acetylgalactosaminyltransferase activity", "id": "GO:0008376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008376", "evidence": [ { "database": "UniProtKB", "id": "I3L7N4", "url": "https://www.uniprot.org/uniprotkb/I3L7N4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 473, "end_pos": 475, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L7N4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 502, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L7N4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L7N4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L7N4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7N4" }, { "id": "PF00535", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00535" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyltransferase 2-like", "eco_id": "ECO_0000259", "start_pos": 261, "end_pos": 367, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 473, "end_pos": 475 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L6S3-1", "uniprot_ac": "I3L6S3", "uniprot_id": "I3L6S3_PIG", "mass": { "chemical_mass": 256845.0, "monoisotopic_mass": 256845.0 }, "refseq": { "ac": "XP_020955528", "name": "A-kinase anchor protein 6 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955528" }, "gene_names": [ { "name": "AKAP6", "type": "recommended", "evidence": [ { "id": "I3L6S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ] }, { "name": "AKAP6", "type": "synonym", "evidence": [ { "id": "XP_020955528", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955528" } ] } ], "protein_names": [ { "name": "A-kinase anchor protein 6", "type": "recommended", "evidence": [ { "id": "I3L6S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6S3/entry#names_and_taxonomy" } ] }, { "name": "A-kinase anchor protein 6 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020955528", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955528" } ] }, { "name": "Protein kinase A-anchoring protein 6", "type": "synonym", "evidence": [ { "id": "I3L6S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6S3/entry#names_and_taxonomy" } ] }, { "name": "mAKAP", "type": "synonym", "evidence": [ { "id": "I3L6S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6S3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the nuclear membrane or sarcoplasmic reticulum. May act as an adapter for assembling multiprotein complexes.", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3#function" }, { "database": "UniProtKB", "id": "ARBA00059890", "url": "https://www.uniprot.org/uniprotkb/ARBA00059890#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AKAP6", "url": "https://www.uniprot.org/uniprotkb/I3L6S3", "locus": { "chromosome": "7", "start_pos": 66915881, "end_pos": 67375177, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024517", "url": "https://www.ensembl.org/id/ENSSSCG00000024517" } ] } } ], "crossref": [ { "id": "ENSSSCG00000024517", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024517", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00176", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00176", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155181", "url": "https://www.ncbi.nlm.nih.gov/gene/100155181", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "INCPPIR", "url": "https://omabrowser.org/oma/group/INCPPIR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR14514", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14514", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14514:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14514:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00435", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00435", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020955528", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020955528", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZWG3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZWG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6S3-1", "url": "https://www.uniprot.org/uniprotkb/I3L6S3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLTMSVTLSPLRSQDLDPMATDASPMAINLTPTVEQVEGEEVMKDMDSDQQYEKPPPLHTGADWKIVLHLPEIETWLRMTSERVRDLTYSVQQDSDSKHVDVHLVQLKDICEDISDHVEQIHALLETEFSLKLLSYSVNVIVDIHAVQLLWHQLRVSVLVLRERILQGLQDANGNYTRQTDILQAFSEETKEGRLDALTEVDDSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLSGLGDMTSSQVKTKPFDSWSYSEMEKEFPELIRSVGLLTVATDPIPSNCSEAVGEEASQVSLSADDRGGCEENNASAVEEQSGLTQELSSSGEALKKGAPPSVETVKQDSVSSSQLGAKNQQPLPCENATPKRSIRDCFNYNEDSPTQPTLPKRGLFLKEETLKNNLKGTSVKKQMVDLKPEMSRSTPSLVDPPDRSKLCLVLQSPYPNSPSAASQSYECLHKMGVENLENTVKSYIKEISSSLGRLNNCHKEKPPLKKPHKTPKEVPPCQTPKREPSSGKQAKNIRSSVVLNGIPSCPSKATEGPETDSASTSSLEPCNQSSWNAKVPVRSETSSSPPFTQSSESSVGSDNITSPEPFLSEHKGKTSLSSSPSHVTRNGQVVEAWYGSDEYLALPSHLKQTEVLALKLENLTKLLPQKPRGETLQNIDDWELSEMNSDSEIYPTYHVKKKHMRLGRVSPSSSSDIASSLGESIESGPLSDLLSDEELGLPLSGMKRYTDEKSERASSSEKKESHSATKSALIQKLMQDIQHQDNYEAIWEKIEGFVNKLDEFIQWLNEAMETTENWTPPKAETDGLKLYLETHLSFKLNVDSHCALKEAVEEEGHQLLELIASHKAGLKDMLRMIASQWKELQRQIKRQHSWILRALDTIKAEILATDVSAEGEEGTESPKAEVQLCYLEAQRDAVEQMSLKLYSEQYTSSSKRKEEFADMSKVHSVGGNGLLDFDSEYQELWDWLIDMESLVMDSHDLMMSEEQQQHLYKRYSVEMSIRDLKKTELLSKVEALKKGGVLLPNDLLEKVDSINEKWELLGKTLGEKIQDTMAGHSGSGPRDLLSPESGSLVRQLEVRIKELKGWLRDTELFIFNSCLRQEKEGTMNAEKQLQYFKSLCCEIKQRRRGVASILRLCQHLLDDRETCNVNPDHQPMQLIIVNLERRWEAIVMQAVQWQTRLQKKMGKESETLNVIDPGYMDLNGTSEDALEWDETDISNKLISLNEESNDLDQESQPVMPSLKLEETGSEDPSYEGEAGDHGAAQYASSITAPSSPHIYQVYSLHNVELYEDNHIPFLKNSPKFTGMTQPSVLTKSLSKDSSFSSTKSLPDLLGGSNLVKPCPCHGGDMSQNSGSESGIVSEGDTETTTNSEMCLLNVVDGSPSNPETEHLDPQMGDAVNMLKQKFKEEGDQIKLPNSSQLSISPVSCVNGKVEDLNSVTKHTPDCLGDELQGKHDVFTFYDYSYLQGSKLRLPMIMKQSQNEKAHVEDPLLHGFYFDKKSCKSKHQATELQPDAPPHERILASAAHEMDRNSYKSGEVEKTLTGMQNARQLSLLSHSSSIESLSPGGDLFALGIFKNGTDSLQRSTSLESWLTSYKSNEDLFSCHSSGDISVSSGSVGELSKRTLDLLNRLENIQSPSEQKIKRSVSDITLQSSSQKMSFTGQLSLDIASSINEDSPASLTELSSSDELSLCSEDIVLHKNKIPESNASFRKRLTRSVADESDVNVSMIVNVSCTSACTDDEDDSDLLSSSTLTLTEEELCIKDEDDDSSIATDDEIYEECNLISGLDYIKNELQTWIRPKFSLTRDKRRCSVSDEIRGSKDVSSSEMTDSSDTLNIEALLNGSIKHLSENNGNGKNLLHTRELGTKGENKKNIFKVNKDPYVADMENGNIESTSERQDKMNEIPKESENLGSTGKRIPESEHCKCKAFMDSSDDSNIAIKDSLPQTIRHLPKKCQKYHHFENQSTASPPTEKSYPELPSKTSAINRQDADVLKSSSTDAPNVAEKSADCCLAVEQNETEGNVSTGDHFSCCDCEPDVFHQKDAEDGSVHDFVKEIIDMASTALKCKSQPENEVAAPTSLTQIKEKVLEHSHRPIQLRKGDFYSYLSLSSHDSDCGEVTSYVEEKSNTPLPPDMTDSGSEDKEDTECFFEACVEDNPDEDKPCFSSAPPNETAVPGEAPGPLQAAAGSSEFSNTPLLADHADIVALSSPPLPQGGGVGQEVDGAPQASNVCGKSSELTTPSRIGSEKESSENPGESGMPEEHNASSTRSGVPELSSKAQQPKDKAAVHPDPQTLTCEENLLDLHEERHRNMHR", "length": 2320, "header": "tr|I3L6S3-1|I3L6S3_PIG Isoform 1 of A-kinase anchor protein 6 OS=Sus scrofa OX=9823 GN=AKAP6 PE=4 SV=2 CANONICAL=I3L6S3-1" }, "isoforms": [ { "isoform_ac": "A0A286ZWG3-1", "url": "https://www.uniprot.org/uniprotkb/I3L6S3/entry#A0A286ZWG3-1", "sequence": { "sequence": "MLTMSVTLSPLRSQDLDPMATDASPMAINLTPTVEQVEGEEVMKDMDSDQQYEKPPPLHTGADWKIVLHLPEIETWLRMTSERVRDLTYSVQQDSDSKHVDVHLVQLKDICEDISDHVEQIHALLETEFSLKLLSYSVNVIVDIHAVQLLWHQLRVSVLVLRERILQGLQDANGNYTRQTDILQAFSEETKEGRLDALTEVDDSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLSGLGDMTSSQVKTKPFDSWSYSEMEKEFPELIRSVGLLTVATDPIPSNCSEAVGEEASQVSLSADDRGGCEENNASAVEEQSGLTQELSSSGEALKKGAPPSVETVKQDSVSSSQLGAKNQQPLPCENATPKRSIRDCFNYNEDSPTQPTLPKRGLFLKEETLKNNLKGTSVKKQMVDLKPEMSRSTPSLVDPPDRSKLCLVLQSPYPNSPSAASQSYECLHKMGVENLENTVKSYIKEISSSLGRLNNCHKEKPPLKKPHKTPKEVPPCQTPKREPSSGKQAKNIRSSVVLNGIPSCPSKATEGPETDSASTSSLEPCNQSSWNAKVPVRSETSSSPPFTQSSESSVGSDNITSPEPFLSEHKGKTSLSSSPSHVTRNGQVVEAWYGSDEYLALPSHLKQTEVLALKLENLTKLLPQKPRGETLQNIDDWELSEMNSDSEIYPTYHVKKKHMRLGRVSPSSSSDIASSLGESIESGPLSDLLSDEELGLPLSGMKRYTDEKSERASSSEKKESHSATKSALIQKLMQDIQHQDNYEAIWEKIEGFVNKLDEFIQWLNEAMETTENWTPPKAETDGLKLYLETHLSFKLNVDSHCALKEAVEEEGHQLLELIASHKAGLKDMLRMIASQWKELQRQIKRQHSWILRALDTIKAEILATDVSAEGEEGTESPKAEVQLCYLEAQRDAVEQMSLKLYSEQYTSSSKRKEEFADMSKVHSVGGNGLLDFDSEYQELWDWLIDMESLVMDSHDLMMSEEQQQHLYKRYSVEMSIRDLKKTELLSKVEALKKGGVLLPNDLLEKVDSINEKWELLGVFAFLLLFVGYVYIFCVVKYSVFLI", "length": 1073, "header": "tr|A0A286ZWG3-1|I3L6S3_PIG Computationally mapped isoform of A-kinase anchor protein 6 OS=Sus scrofa OX=9823 GN=AKAP6 PE=4 SV=2 CANONICAL=I3L6S3-1" }, "locus": { "chromosome": "7", "start_pos": 67280921, "end_pos": 66995948, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043667.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043667.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036034.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036034.2" } ] } }, { "isoform_ac": "I3L6S3-1", "url": "https://www.uniprot.org/uniprotkb/I3L6S3/entry#I3L6S3-1", "sequence": { "sequence": "MLTMSVTLSPLRSQDLDPMATDASPMAINLTPTVEQVEGEEVMKDMDSDQQYEKPPPLHTGADWKIVLHLPEIETWLRMTSERVRDLTYSVQQDSDSKHVDVHLVQLKDICEDISDHVEQIHALLETEFSLKLLSYSVNVIVDIHAVQLLWHQLRVSVLVLRERILQGLQDANGNYTRQTDILQAFSEETKEGRLDALTEVDDSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLSGLGDMTSSQVKTKPFDSWSYSEMEKEFPELIRSVGLLTVATDPIPSNCSEAVGEEASQVSLSADDRGGCEENNASAVEEQSGLTQELSSSGEALKKGAPPSVETVKQDSVSSSQLGAKNQQPLPCENATPKRSIRDCFNYNEDSPTQPTLPKRGLFLKEETLKNNLKGTSVKKQMVDLKPEMSRSTPSLVDPPDRSKLCLVLQSPYPNSPSAASQSYECLHKMGVENLENTVKSYIKEISSSLGRLNNCHKEKPPLKKPHKTPKEVPPCQTPKREPSSGKQAKNIRSSVVLNGIPSCPSKATEGPETDSASTSSLEPCNQSSWNAKVPVRSETSSSPPFTQSSESSVGSDNITSPEPFLSEHKGKTSLSSSPSHVTRNGQVVEAWYGSDEYLALPSHLKQTEVLALKLENLTKLLPQKPRGETLQNIDDWELSEMNSDSEIYPTYHVKKKHMRLGRVSPSSSSDIASSLGESIESGPLSDLLSDEELGLPLSGMKRYTDEKSERASSSEKKESHSATKSALIQKLMQDIQHQDNYEAIWEKIEGFVNKLDEFIQWLNEAMETTENWTPPKAETDGLKLYLETHLSFKLNVDSHCALKEAVEEEGHQLLELIASHKAGLKDMLRMIASQWKELQRQIKRQHSWILRALDTIKAEILATDVSAEGEEGTESPKAEVQLCYLEAQRDAVEQMSLKLYSEQYTSSSKRKEEFADMSKVHSVGGNGLLDFDSEYQELWDWLIDMESLVMDSHDLMMSEEQQQHLYKRYSVEMSIRDLKKTELLSKVEALKKGGVLLPNDLLEKVDSINEKWELLGKTLGEKIQDTMAGHSGSGPRDLLSPESGSLVRQLEVRIKELKGWLRDTELFIFNSCLRQEKEGTMNAEKQLQYFKSLCCEIKQRRRGVASILRLCQHLLDDRETCNVNPDHQPMQLIIVNLERRWEAIVMQAVQWQTRLQKKMGKESETLNVIDPGYMDLNGTSEDALEWDETDISNKLISLNEESNDLDQESQPVMPSLKLEETGSEDPSYEGEAGDHGAAQYASSITAPSSPHIYQVYSLHNVELYEDNHIPFLKNSPKFTGMTQPSVLTKSLSKDSSFSSTKSLPDLLGGSNLVKPCPCHGGDMSQNSGSESGIVSEGDTETTTNSEMCLLNVVDGSPSNPETEHLDPQMGDAVNMLKQKFKEEGDQIKLPNSSQLSISPVSCVNGKVEDLNSVTKHTPDCLGDELQGKHDVFTFYDYSYLQGSKLRLPMIMKQSQNEKAHVEDPLLHGFYFDKKSCKSKHQATELQPDAPPHERILASAAHEMDRNSYKSGEVEKTLTGMQNARQLSLLSHSSSIESLSPGGDLFALGIFKNGTDSLQRSTSLESWLTSYKSNEDLFSCHSSGDISVSSGSVGELSKRTLDLLNRLENIQSPSEQKIKRSVSDITLQSSSQKMSFTGQLSLDIASSINEDSPASLTELSSSDELSLCSEDIVLHKNKIPESNASFRKRLTRSVADESDVNVSMIVNVSCTSACTDDEDDSDLLSSSTLTLTEEELCIKDEDDDSSIATDDEIYEECNLISGLDYIKNELQTWIRPKFSLTRDKRRCSVSDEIRGSKDVSSSEMTDSSDTLNIEALLNGSIKHLSENNGNGKNLLHTRELGTKGENKKNIFKVNKDPYVADMENGNIESTSERQDKMNEIPKESENLGSTGKRIPESEHCKCKAFMDSSDDSNIAIKDSLPQTIRHLPKKCQKYHHFENQSTASPPTEKSYPELPSKTSAINRQDADVLKSSSTDAPNVAEKSADCCLAVEQNETEGNVSTGDHFSCCDCEPDVFHQKDAEDGSVHDFVKEIIDMASTALKCKSQPENEVAAPTSLTQIKEKVLEHSHRPIQLRKGDFYSYLSLSSHDSDCGEVTSYVEEKSNTPLPPDMTDSGSEDKEDTECFFEACVEDNPDEDKPCFSSAPPNETAVPGEAPGPLQAAAGSSEFSNTPLLADHADIVALSSPPLPQGGGVGQEVDGAPQASNVCGKSSELTTPSRIGSEKESSENPGESGMPEEHNASSTRSGVPELSSKAQQPKDKAAVHPDPQTLTCEENLLDLHEERHRNMHR", "length": 2320, "header": "tr|I3L6S3-1|I3L6S3_PIG Isoform 1 of A-kinase anchor protein 6 OS=Sus scrofa OX=9823 GN=AKAP6 PE=4 SV=2 CANONICAL=I3L6S3-1" }, "locus": { "chromosome": "7", "start_pos": 67280921, "end_pos": 66922278, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000041802.3", "url": "https://www.ensembl.org/id/ENSSSCT00000041802.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057102.1", "url": "https://www.ensembl.org/id/ENSSSCP00000057102.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZWG3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZWG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E9Q9K8-1", "protein_name": "A-kinase anchor protein 6", "gene_name": "Akap6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLTMSVTLSPLRSQDPDPMATDASPMAINMTPTVEQEEGEGEEAVKDVGAEQQYGKPPPLHTAADWKIVLHLPEIETWLRMTSERVRDLTYSVQQDADSKHVDVHLVQLKDICEDISDHVEQIHALLETEFSLKLLSYSVNVIVDIHAVQLLWHQLRVSVLVLRERILQGLQDANGNYTRQTDILQAFSEETTEGRLDSLTEVDDSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLGGLGDMTTSQAKTKSFDSWSYSEMEKEFPELIRSVGLLTVATEPVPSSCGAANEDSSQVILSEDHRGGHEEDGALEPGEQLGSTLETSSLGDTLTNAAEHPPETANQDSTSSPQLGAKKSQPGPCEMMTPKRSIRDCFNYNEDSPTQPTLPKRGLFLKETLKNERRGSDGKGRVVDLKPELSRSTPSLVEPPDRSKLCLVLQSSYPSSPSAASQSYECLHKVGIGNLENIVRSHIKEISSSLGRLTDCHKEKPRLKKPHKTLAEVSLCKIPKRGTGSGKQSENTRSSVVPTMVSPGAPKATARPATDSASTTSGDTCHQRNRGGKLPAQSKASSSSPCSHSSESSLGSDNIKSPLPLLSKSQKGSPPAPCHATQNGQVVEAWYGSDEYLALPSHLKQTEVLALKLENLTKLLPQKPRGETIQDIDDWELSEMNSDSEIYPTYHIKKKHTRLGTVSPSSSSDIASSLGESIESGPLSDILSDEDLCMPLSGMKKFTDEKSERPSSSEKNESHSATKSALIQKLMKDIQHQDNYEAIWERIEGFVNKLDEFIQWLNEAMETTENWTPPKAETDSLRLYLETHLSFKLNVDSHCALKEAVEEEGHQLLELIASHKAGLKDMLKMIASQWKELQRQIKRQHSWILRALDTIKAEILATDVSVEDEEGTGSPKAEAQLCYLEAQRDAVEQMSLKLYSEQYTSGSKRKEEFADMSKAHSVGSNGLLDFDSEYQELWDWLIDMESLVMDSHDLMMSEEQQQHLYKRYSVEMSIRHLKKTELLSKVEALKKGGLSLPNDILEKVDSINEKWELLGKTLREKIQDTMAGHSGSGPRDLLSPESGSLVRQLEVRIKELKRWLRDTELFIFNSCLRQEKEGTSAEKQLQYFKSLCHEIKQRRRGVASILRLCQHLLDDRDTCNLNADHQPMQLIIVNLERRWEAIVMQAVQWQTRLRKKMGKESETLNVIDPGLMDLNGMSEDALEWDETDISNKLISVHEESNDLDQDLEPMVPTVKLEETHHKDSGYEEEAGDCGGSQYTSNITAPSSPHIYQVYSLHNVEFHEDSHTQFLKSSPKFTGTVQPTVLTKSLSKDSSFSSTKSLPDLLGGSSLVRPYSCQSGDLSQNSGSESGIVSEGDNEMPTNSDMSLFSMVDGSPSNPETQHLDPQMGDAANVLEQKFKDEGECIKLSSVSQASVSPVGCVNGKAGDLNSITKHTTDCLGDELQGKHEVFTFYDYSYLQGSKLKFPMIMKQPQSEKAHLEDPLLRGFYFDKKSCKPKHQTSESQPDAPLHEKILASAPHEMGRSSYKSSDIEKALTGIQNARQLSLLSRSSSVESLSPGGDLFGLGIFKNGSDSLQRSTSLESWLTSYKSNEDLFSCHSSGDISVSSGSVGELSKRTLDLLNRLENIQSPSEQKIKRSVSDITLQSSSQKMSFSGQMSLDVASSINEDSPASLTELSSSDELSLCSEDIVLHKNKVPESNASFRKRLNRSVADESDVNVSMIVNVSCTSACTDDEDDSDLLSSSTLTLTEEELCLKDEDDDSSIATDDEIYEESNLMSGLDYIKNELQTWIRPKLSLSREKKRPSVTDEIKVNKDGGSTERANPSDTLDIEALLNCSIKRLSENNGNGKNPPRTHDLGTKGENKKNTYDVTKDPHVADMENGNVESTPEREKEKPEIPEASANLASNVKKISESKHDEYEALMDGSDDSSVTGKEFGPPNDRHPPQIGADPQHPERGDCTSVQNSCSGLLLETGGGSRQDSDGLKSLSNDAPSVARNAAGCCLLEQNETEESASISSSTSCCNCKPDVFHQKDDEDCSVHDFVKEIIDMASTALKSKSQPESEVAAPTSLTQIKEKVLEHSHRPIHLRKGDFYSYLSLSSHDSDCGEVTNYIDEKSNTPLPPDTVDSGLDDKEDVDCFFEACVEDEPADEEARLSSALPNESEVQDEAAKPEQMTASSSVFRDETDTVPLSGLSPQKGADDAKEGDGASHTSQGCVESAEPTTPPGKAKREGSSRKQSVSGTPEENAASAKPKIQAFSLNAKQPKGKAALYPSPQTLTCKEKLVSFHEDRHSNMHR", "length": 2307 }, "evidence": [ { "id": "I3L6S3", "url": "https://omabrowser.org/oma/group/I3L6S3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1N0Q2-1", "protein_name": "A-kinase anchor protein 6", "gene_name": "AKAP6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLTMSVTLSPLRSQDLDPMATDASPMAINLTPTVEQGGGEEVMRGMDPDQQYEKPPPLHTGADWKIVLHLPEIETWLRMTSERVRDLTYSVQQDSDSKHVDVHLVQLKDICEDISDHVEQIHALLETEFSLKLLSYSVNVIVDIHAVQLLWHQLRVSVLVLRERILQGLQDANGNYTRQTDILQAFSEETKEGRLDALTEVDDSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLGGLGDMTSSQVKTKPFDSWSYSEMEKEFPELIRSVGLLSVAPDSVPSNFSEAVSEEASQVSLSADDTGRSEENNACTVEEQPGLMQGPSSSVEAPTNAVQPASEAVKQESDSSSQHGAKNPQPLACENTTPKRSIRDCFNYNEDSPTQPTLPKRGFFLKDETVKNNLKGPSGKKQMVDLKPEMSRSTPSLVDPPDRSKLCLVLQSSYPNSPSAASQSYECLHKMGDGNLENTVRSHIKEISSSLGRLNDCHKEKLRLKKPHKTGEEMPPCQTPKQEPSSDKQAKNTRSATVPNAIPSSPSKARQRPEAESASTSSLEPCHQSSGNAKLPVQSETSSSPPFTQSSESSASSDSVTSLGPLLSEHKGKSSYSSSPSHITRNGQVVEAWYGSDEYLALPSHLKQTEVLALKLENLTKLLPQKPRGETVQNIDDWELSEMNSDSEMYPTYHVKKKHTRLGRVSPSSSSDIASSLGESVESGPLSDLLSDEELGMPLSGMKKYADEKSERVSSSEKNESHSAAKSALIQKLMQDIQHQDNYEAIWEKIEGFVNKLDEFIQWLNEAMETTENWTPPKAETDSLKLYLETHLSFKLNVDSHCALKEAVEEEGHQLLELIASHKAGLKDMLRMIASQWKELQRQIKRQHSWILRALDTIKAEILATDVSVEGEEGTGSPKAEVQLCYLEAQRDAVEQMSLKLYSEQYTSSSKRKEEFADMSKVHSGGGNGLLDFDSEYQELWDWLIDMESLVMDSHDLMMSEEQQQHLYKRYSVEMSIRDLKKTELLSKVEALKKGGVLLPNDLLEKVDSINEKWELLGKTLGEKVQDTMAGHSGSSPRDLLSPESGSLVRQLEVRIKELKGWLRDTELFIFNSCLRQEKEGTMNAEKQLQYFKSLCREIKQRRRGVASILRLCQHLLDDRETCNLNADHQPMQLIIVNLERRWEAIVMQAVQWQTRLQKKMGKESEALNVIDPGLMDLNGTSEDALEWDETDISNKLISLNEELNDLDQESQPAMPSLNLKETDSENPSYEEEAGGHGASQFASSITAPSSPHVYQVYSLHNVELYEDSHIPFLKNNPKFTSMTQPSVLTKSLSKDSSFSSTKSLPDLLGGSNLVKPCPCHGGDMSQNSGSESGIVSEGDTETTTNSEMCLLNAVDGSPSNPDTEHLDPQMGDAVNVLKQKIKDEEERIKLPNSSQLPISPVGCVNGKVGDLNSVTKHTPDCLGEELQGKHDVFTFYDYSYLQGSKLKLPMIMKQSQSEKAHVEDPLLHGFYFDKKSCKSKHQATELQPDAPPHERILASAPHEMDRSSYKSGDVEKTFTGMQNARQLSLLSHSSSIESLSPGGDLFALGIFKNGSDSLQRSTSLESWLTSYKSNEDLFSCHSSGDLSVSSGSVGELSKRTLDLLNRLENIQSPSEQKIKRSVSDITLQSCSQKMSFPGQLSLDMASSINEDSPASLTELSSSDELSLCSEDIVLHKNKIPESNVSFRKRLPRSVADESDVNVSMIVNVSCTSACTDDEDDSDLLSSSTLTLTEEELCVKDEDDDSSIATDDEIYEDCNVMSGLDYIKNELQTWIRPKLSLTRDKRRCNLSDEIKGNKDVSSSEMTNSSDTLNIETLLNGSIKHLSENNGNSKNLPHTRELGTKGENKKNIFTVNKDPYVADMENGNIESIPESQKDKLNEISKESESFGSAGKRISESEHCKCKPVMDGSDESDIAGKESVPQMARHVPKKCQSHHHFENQSAASTPTEKSCPELPSETSVINGQDSNVLKSSSNNAPSMAGKPAGCCLAREQNETEENVAASDNVSCCDCEPDIFHQKDAEDCSVHDFVKEIIGMASTALKCKSQPENEVTAPTSLTQIKEKVLEHSHRPIQLRKGDFYSYLSLSSHDSDCGEVTNYIEEKSSTPLPTDMTDSGSEDKEDTEYFFEACVEEDPAEDKPCFSDVPPNEPADPTEAAVPLLAGAGSSRFSDTSLLASNADMVALSSPPKGGDVGKEVDSLPEASNVHGESAEVTTPSRLGSEKESSENPGESARPEEHSASSAPSGVPRLSSKAKQPKDKAAWHPSPTALTCEENLLNLQEERHRNMHR", "length": 2319 }, "evidence": [ { "id": "I3L6S3", "url": "https://omabrowser.org/oma/group/I3L6S3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q13023-1", "protein_name": "A-kinase anchor protein 6", "gene_name": "AKAP6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLTMSVTLSPLRSQDLDPMATDASPMAINMTPTVEQGEGEEAMKDMDSDQQYEKPPPLHTGADWKIVLHLPEIETWLRMTSERVRDLTYSVQQDSDSKHVDVHLVQLKDICEDISDHVEQIHALLETEFSLKLLSYSVNVIVDIHAVQLLWHQLRVSVLVLRERILQGLQDANGNYTRQTDILQAFSEETKEGRLDSLTEVDDSGQLTIKCSQNYLSLDCGITAFELSDYSPSEDLLSGLGDMTSSQVKTKPFDSWSYSEMEKEFPELIRSVGLLTVAADSISTNGSEAVTEEVSQVSLSVDDKGGCEEDNASAVEEQPGLTLGVSSSSGEALTNAAQPSSETVQQESSSSSHHDAKNQQPVPCENATPKRTIRDCFNYNEDSPTQPTLPKRGLFLKEETFKNDLKGNGGKRQMVDLKPEMSRSTPSLVDPPDRSKLCLVLQSSYPNSPSAASQSYECLHKVGNGNLENTVKFHIKEISSSLGRLNDCYKEKSRLKKPHKTSEEVPPCRTPKRGTGSGKQAKNTKSSAVPNGELSYTSKAIEGPQTNSASTSSLEPCNQRSWNAKLQLQSETSSSPAFTQSSESSVGSDNIMSPVPLLSKHKSKKGQASSPSHVTRNGEVVEAWYGSDEYLALPSHLKQTEVLALKLENLTKLLPQKPRGETIQNIDDWELSEMNSDSEIYPTYHVKKKHTRLGRVSPSSSSDIASSLGESIESGPLSDILSDEESSMPLAGMKKYADEKSERASSSEKNESHSATKSALIQKLMQDIQHQDNYEAIWEKIEGFVNKLDEFIQWLNEAMETTENWTPPKAEMDDLKLYLETHLSFKLNVDSHCALKEAVEEEGHQLLELIASHKAGLKDMLRMIASQWKELQRQIKRQHSWILRALDTIKAEILATDVSVEDEEGTGSPKAEVQLCYLEAQRDAVEQMSLKLYSEQYTSSSKRKEEFADMSKVHSVGSNGLLDFDSEYQELWDWLIDMESLVMDSHDLMMSEEQQQHLYKRYSVEMSIRHLKKTELLSKVEALKKGGVLLPNDLLEKVDSINEKWELLGKTLGEKIQDTMAGHSGSSPRDLLSPESGSLVRQLEVRIKELKGWLRDTELFIFNSCLRQEKEGTMNTEKQLQYFKSLCREIKQRRRGVASILRLCQHLLDDRETCNLNADHQPMQLIIVNLERRWEAIVMQAVQWQTRLQKKMGKESETLNVIDPGLMDLNGMSEDALEWDEMDISNKLISLNEESNDLDQELQPVIPSLKLGETSNEDPGYDEEADNHGGSQYASNITAPSSPHIYQVYSLHNVELYEDNHMPFLKNNPKVTGMTQPNVLTKSLSKDSSFSSTKSLPDLLGGSNLVKPCACHGGDMSQNSGSESGIVSEGDTETTTNSEMCLLNAVDGSPSNLETEHLDPQMGDAVNVLKQKFTDEGESIKLPNSSQSSISPVGCVNGKVGDLNSITKHTPDCLGEELQGKHDVFTFYDYSYLQGSKLKLPMIMKQSQSEKAHVEDPLLRGFYFDKKSCKSKHQTTELQPDVPPHERILASASHEMDRISYKSGNIEKTFTGMQNAKQLSLLSHSSSIESLSPGGDLFGLGIFKNGSDSLQRSTSLESWLTSYKSNEDLFSCHSSGDISVSSGSVGELSKRTLDLLNRLENIQSPSEQKIKRSVSDITLQSSSQKMSFTGQMSLDIASSINEDSAASLTELSSSDELSLCSEDIVLHKNKIPESNASFRKRLTRSVADESDVNVSMIVNVSCTSACTDDEDDSDLLSSSTLTLTEEELCIKDEDDDSSIATDDEIYEDCTLMSGLDYIKNELQTWIRPKLSLTRDKKRCNVSDEMKGSKDISSSEMTNPSDTLNIETLLNGSVKRVSENNGNGKNSSHTHELGTKRENKKTIFKVNKDPYVADMENGNIEGIPERQKGKPNVTSKVSENLGSHGKEISESEHCKCKALMDSLDDSNTAGKEFVSQDVRHLPKKCPNHHHFENQSTASTPTEKSFSELALETRFNNRQDSDALKSSDDAPSMAGKSAGCCLALEQNGTEENASISNISCCNCEPDVFHQKDAEDCSVHNFVKEIIDMASTALKSKSQPENEVAAPTSLTQIKEKVLEHSHRPIQLRKGDFYSYLSLSSHDSDCGEVTNYIEEKSSTPLPLDTTDSGLDDKEDIECFFEACVEGDSDGEEPCFSSAPPNESAVPSEAAMPLQATACSSEFSDSSLSADDADTVALSSPSSQERAEVGKEVNGLPQTSSGCAENLEFTPSKLDSEKESSGKPGESGMPEEHNAASAKSKVQDLSLKANQPTDKAALHPSPKTLTCEENLLNLHEKRHRNMHR", "length": 2319 }, "evidence": [ { "id": "I3L6S3", "url": "https://omabrowser.org/oma/group/I3L6S3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9WVC7-1", "protein_name": "A-kinase anchor protein 6", "gene_name": "Akap6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLTMSVTLSPLRSQGPDPMATDASPMAINMTPTVEQEEGEGEEAVKAIDAEQQYGKPPPLHTAADWKIVLHLPEIETWLRMTSERVRDLTYSVQQDADSKHVDVHLVQLKDICEDISDHVEQIHALLETEFSLKLLSYSVNVIVDIHAVQLLWHQLRVSVLVLRERILQGLQDANGNYTRQTDILQAFSEETTEGRLDSLTEVDDSGQLTIKCSQDYLSLDCGITAFELSDYSPSEDLLGGLGDMTTSQAKTKSFDSWSYSEMEKEFPELIRSVGLLTVATEPVPSSCGEANEDSSQASLSDDHKGEHGEDGAPVPGQQLDSTVGMSSLDGTLANAAEHPSETAKQDSTSSPQLGAKKTQPGPCEITTPKRSIRDCFNYNEDSPTQPTLPKRGLFLKETQKNERKGSDRKGQVVDLKPELSRSTPSLVDPPDRSKLCLVLQSSYPSSPSAASQSYECLHKVGLGNLENIVRSHIKEISSSLGRLTDCHKEKLRLKKPHKTLAEVSLCRIPKQGGGSGKRSESTGSSAGPSMVSPGAPKATMRPETDSASTASGGLCHQRNRSGQLPVQSKASSSPPCSHSSESSLGSDSIKSPVPLLSKNKSQKSSPPAPCHATQNGQVVEAWYGSDEYLALPSHLKQTEVLALKLESLTKLLPQKPRGETIQDIDDWELSEMNSDSEIYPTYHIKKKHTRLGTVSPSSSSDIASSLGESIESGPLSDILSDEDLCLPLSSVKKFTDEKSERPSSSEKNESHSATRSALIQKLMHDIQHQENYEAIWERIEGFVNKLDEFIQWLNEAMETTENWTPPKAETDSLRLYLETHLSFKLNVDSHCALKEAVEEEGHQLLELVVSHKAGLKDTLRMIASQWKELQRQIKRQHSWILRALDTIKAEILATDVSVEDEEGTGSPKAEVQLCHLETQRDAVEQMSLKLYSEQYTSGSKRKEEFANMSKAHAEGSNGLLDFDSEYQELWDWLIDMESLVMDSHDLMMSEEQQQHLYKRYSVEMSIRHLKKSELLSKVEALKKGGLSLPDDILEKVDSINEKWELLGKTLREKIQDTIAGHSGSGPRDLLSPESGSLVRQLEVRIKELKRWLRDTELFIFNSCLRQEKEGTSAEKQLQYFKSLCREIKQRRRGVASILRLCQHLLDDRDTCNLNADHQPMQLIIVNLERRWEAIVMQAVQWQTRLQKKMGKESETLNVIDPGLMDLNGMSEDALEWDETDISNKLISVHEESNDLDQDPEPMLPAVKLEETHHKDSGYEEEAGDCGGSPYTSNITAPSSPHIYQVYSLHNVELHEDSHTPFLKSSPKFTGTTQPTVLTKSLSKDSSFSSTKSLPDLLGGSGLVRPYSCHSGDLSQNSGSESGIVSEGDNEMPTNSDMSLFSMVDGSPSNPETEHPDPQMGDAANVLEQKFKDNGESIKLSSVSRASVSPVGCVNGKAGDLNSVTKHTADCLGEELQGKHDVFTFYDYSYLQGSKLKLPMIMKQPQSEKAHVEDPLLGGFYFDKKSCKAKHQASESQPDAPPHERILASAPHEMGRSAYKSSDIEKTFTGIQSARQLSLLSRSSSVESLSPGGDLFGLGIFKNGSDSLQRSTSLESWLTSYKSNEDLFSCHSSGDISVSSGSVGELSKRTLDLLNRLENIQSPSEQKIKRSVSDMTLQSSSQKMPFAGQMSLDVASSINEDSPASLTELSSSDELSLCSEDIVLHKNKIPESNASFRKRLNRSVADESDVNVSMIVNVSCTSACTDDEDDSDLLSSSTLTLTEEELCLKDEDDDSSIATDDEIYEESNLMSGLDYIKNELQTWIRPKLSLTREKKRSGVTDEIKVNKDGGGNEKANPSDTLDIEALLNGSIRCLSENNGNGKTPPRTHGSGTKGENKKSTYDVSKDPHVADMENGNIESTPEREREKPQGLPEVSENLASNVKTISESELSEYEAVMDGSEDSSVARKEFCPPNDRHPPQMGPKLQHPENQSGDCKPVQNPCPGLLSEAGVGSRQDSNGLKSLPNDAPSGARKPAGCCLLEQNETEESASISSNASCCNCKPDVFHQKDDEDCSVHDFVKEIIDMASTALKSKSQPESEVAAPTSLTQIKEKVLEHSHRPIHLRKGDFYSYLSLSSHDSDCGEVTNYIDEKSSTPLPPDAVDSGLDDKEDMDCFFEACVEDEPVNEEAGLPGALPNESAIEDGAEQKSEQKTASSPVLSDKTDLVPLSGLSPQKGADDAKEGDDVSHTSQGCAESTEPTTPSGKANAEGRSRMQGVSATPEENAASAKPKIQAFSLNAKQPKGKVAMRYPSPQTLTCKEKLVNFHEDRHSNMHR", "length": 2314 }, "evidence": [ { "id": "I3L6S3", "url": "https://omabrowser.org/oma/group/I3L6S3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "nuclear membrane", "id": "GO:0031965", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031965", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "sarcoplasmic reticulum", "id": "GO:0016529", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016529", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "calcium channel complex", "id": "GO:0034704", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034704", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "regulation of relaxation of cardiac muscle", "id": "GO:1901897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901897", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "cellular response to cAMP", "id": "GO:0071320", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071320", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "action potential", "id": "GO:0001508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001508", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "regulation of membrane repolarization", "id": "GO:0060306", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060306", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum", "id": "GO:0010880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010880", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "positive regulation of potassium ion transmembrane transport", "id": "GO:1901381", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901381", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" }, { "name": "cytoskeleton-nuclear membrane anchor activity", "id": "GO:0140444", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140444", "evidence": [ { "database": "UniProtKB", "id": "I3L6S3", "url": "https://www.uniprot.org/uniprotkb/I3L6S3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1209, "end_pos": 1211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1423, "end_pos": 1425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1584, "end_pos": 1586, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1714, "end_pos": 1716, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1732, "end_pos": 1734, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1738, "end_pos": 1740, "annotation": "n_glycosylation_sequon" }, { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1849, "end_pos": 1851, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1970, "end_pos": 1972, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2024, "end_pos": 2026, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2029, "end_pos": 2031, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2177, "end_pos": 2179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2270, "end_pos": 2272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" }, { "start_pos": 311, "end_pos": 313, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 557, "end_pos": 559, "annotation": "n_glycosylation_sequon" }, { "start_pos": 589, "end_pos": 591, "annotation": "n_glycosylation_sequon" }, { "start_pos": 648, "end_pos": 650, "annotation": "n_glycosylation_sequon" }, { "start_pos": 803, "end_pos": 805, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1209, "end_pos": 1211 }, { "start_pos": 1423, "end_pos": 1425 }, { "start_pos": 1584, "end_pos": 1586 }, { "start_pos": 1714, "end_pos": 1716 }, { "start_pos": 1732, "end_pos": 1734 }, { "start_pos": 1738, "end_pos": 1740 }, { "start_pos": 175, "end_pos": 177 }, { "start_pos": 1849, "end_pos": 1851 }, { "start_pos": 1970, "end_pos": 1972 }, { "start_pos": 2024, "end_pos": 2026 }, { "start_pos": 2029, "end_pos": 2031 }, { "start_pos": 2177, "end_pos": 2179 }, { "start_pos": 2270, "end_pos": 2272 }, { "start_pos": 285, "end_pos": 287 }, { "start_pos": 29, "end_pos": 31 }, { "start_pos": 311, "end_pos": 313 }, { "start_pos": 365, "end_pos": 367 }, { "start_pos": 557, "end_pos": 559 }, { "start_pos": 589, "end_pos": 591 }, { "start_pos": 648, "end_pos": 650 }, { "start_pos": 803, "end_pos": 805 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST03-1", "uniprot_ac": "F1ST03", "uniprot_id": "F1ST03_PIG", "mass": { "chemical_mass": 155618.0, "monoisotopic_mass": 155618.0 }, "refseq": { "ac": "XP_005663507", "name": "pogo transposable element with ZNF domain isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663507" }, "gene_names": [ { "name": "POGZ", "type": "recommended", "evidence": [ { "id": "F1ST03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ] }, { "name": "POGZ", "type": "synonym", "evidence": [ { "id": "XP_005663507", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663507" } ] } ], "protein_names": [ { "name": "Pogo transposable element with ZNF domain", "type": "recommended", "evidence": [ { "id": "F1ST03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST03/entry#names_and_taxonomy" } ] }, { "name": "pogo transposable element with ZNF domain isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005663507", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663507" } ] } ], "function": [ { "annotation": "Plays a role in mitotic cell cycle progression and is involved in kinetochore assembly and mitotic sister chromatid cohesion. Probably through its association with CBX5 plays a role in mitotic chromosome segregation by regulating aurora kinase B/AURKB activation and AURKB and CBX5 dissociation from chromosome arms. Promotes the repair of DNA double-strand breaks through the homologous recombination pathway.", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03#function" }, { "database": "UniProtKB", "id": "ARBA00056049", "url": "https://www.uniprot.org/uniprotkb/ARBA00056049#function" }, { "database": "UniProtKB", "id": "A0A286ZXB6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXB6#function" }, { "database": "UniProtKB", "id": "A0A287ANG0", "url": "https://www.uniprot.org/uniprotkb/A0A287ANG0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POGZ", "url": "https://www.uniprot.org/uniprotkb/F1ST03", "locus": { "chromosome": "4", "start_pos": 97833282, "end_pos": 97776589, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006622", "url": "https://www.ensembl.org/id/ENSSSCG00000006622" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006622", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006622", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155137", "url": "https://www.ncbi.nlm.nih.gov/gene/100155137", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057618", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057618", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155137", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155137", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1ST03", "url": "https://www.orthodb.org/?gene=F1ST03", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24388", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24388", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24388:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24388:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03184", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03184", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25414", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25414", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663507", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663507", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZXB6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANG0", "url": "https://www.uniprot.org/uniprotkb/A0A287ANG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287ANG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287ANG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST03-1", "url": "https://www.uniprot.org/uniprotkb/F1ST03-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTTVTVSQQPVSAPVPIAAHASVTGHLSTSTTVSSSGAQNSDSTKKTLVTLIANNNAGNSLVQQGGQPLILTQNPTPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNVRPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMTPVRPGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPTATQPTSLGQLAVQPPGQSNQTPNPKLAPSFPSPPAVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPVVVSNNSSAHGSQRTSGPESSVKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQKKGKSLDSEPSVPSAAKPPSPEKTTPVASTPSSTPIPALSPPTKVPEPNENVGDAVQTKLIMLVDDFYYGRDGGKVAQLTNFPKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPVSSSDAPPSTLQEAAPLASSTDPLPVFLYPPVQRNIQKRAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNSVSGIKLACTSCTFVTSVGDAMAKHLVFNPSHRSSSILPRGLTWISHSRHGQTRDRLHDRNLKNLYPPPSFPSNKAATVKSVGATPAEPEELPAPMAQAVPSPASTATPPPTPTHPQPLALPLATEGAECLNVEDQDEGSPVTQEPEPASGGGSSSGLGKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAHTLPKDVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQTVGTGEPWCDVVLAILADGTVLPTLVFYRGQMDQPANVPDSILLEAKESGYSDDEIMELWSSRVWQKHTACQRSKGMLVMDCHRTHLSEEVLAMLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMADTACDSDVLLQLVLVWLAEVLGVIGDCPELVQRSFLVASVLPGPDGNINSPTRNADMQEELIASLEEQLKLSGEQSEEPSASTPRPRSSPEETIEPESLHQLFEGESETESFYGFEEADLDLMEI", "length": 1412, "header": "tr|F1ST03-1|F1ST03_PIG Isoform 1 of Pogo transposable element with ZNF domain OS=Sus scrofa OX=9823 GN=POGZ PE=1 SV=4 CANONICAL=F1ST03-1" }, "isoforms": [ { "isoform_ac": "A0A286ZXB6-1", "url": "https://www.uniprot.org/uniprotkb/F1ST03/entry#A0A286ZXB6-1", "sequence": { "sequence": "MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTTVTVSQQPVSAPVPIAAHASVTGHLSTSTTVSSSGAQNSDSTKKTLVTLIANNNAGNSLVQQGGQPLILTQNPTPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNVRPVQNAMNQVGIVLNVQQGQTVRPITLVPVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPVVVSNNSSAHGSQRTSGPESSVKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQKKGKSLDSEPSVPSAAKPPSPEKTTPVASTPSSTPIPALSPPTKVPEPNENVGDAVQTKLIMLVDDFYYGRDGGKVAQLTNFPKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPVSSSDAPPSTLQEAAPLASSTDPLPVFLYPPVQRNIQKRAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNSVSGIKLACTSCTFVTSVGDAMAKHLVFNPSHRSSSILPRGLTWISHSRHGQTRDRLHDRNLKNLYPPPSFPSNKAATVKSVGATPAEPEELPAPMAQAVPSPASTATPPPTPTHPQPLALPLATEGAECLNVEDQDEGSPVTQEPEPASGGGSSSGLGKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAHTLPKDVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQTVGTGEPWCDVVLAILADGTVLPTLVFYRGQMDQPANVPDSILLEAKESGYSDDEIMELWSSRVWQKHTACQRSKGMLVMDCHRTHLSEEVLAMLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMADTACDSDVLLQLVLVWLAEVLGVIGDCPELVQRSFLVASVLPGPDGNINSPTRNADMQEELIASLEEQLKLSGEQSEEPSASTPRPRSSPEETIEPESLHQLFEGESETESFYGFEEADLDLMEI", "length": 1306, "header": "tr|A0A286ZXB6-1|F1ST03_PIG Computationally mapped isoform of Pogo transposable element with ZNF domain OS=Sus scrofa OX=9823 GN=POGZ PE=1 SV=2 CANONICAL=F1ST03-1" }, "locus": { "chromosome": "4", "start_pos": 97831204, "end_pos": 97796455, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046893.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046893.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036265.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036265.2" } ] } }, { "isoform_ac": "A0A287ANG0-1", "url": "https://www.uniprot.org/uniprotkb/F1ST03/entry#A0A287ANG0-1", "sequence": { "sequence": "MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTTVTVSQQPVSAPVPIAAHASVTGHLSTSTTVSSSGAQNSDSTKKTLVTLIANNNAPGTQFVKPTVGVPQVFSQMTPVRPGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPTATQPTSLGQLAVQPPGQSNQTPNPKLAPSFPSPPAVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPVVVSNNSSAHGSQRTSGPESSVKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQKKGKSLDSEPSVPSAAKPPSPEKTTPVASTPSSTPIPALSPPTKVPEPNENVGDAVQTKLIMLVDDFYYGRDGGKVAQLTNFPKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPVSSSDAPPSTLQEAAPLASSTDPLPVFLYPPVQRNIQKRAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNSVSGIKLACTSCTFVTSVGDAMAKHLVFNPSHRSSSILPRGLTWISHSRHGQTRDRLHDRNLKNLYPPPSFPSNKAATVKSVGATPAEPEELPAPMAQAVPSPASTATPPPTPTHPQPLALPLATEGAECLNVEDQDEGSPVTQEPEPASGGGSSSGLGKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAHTLPKDVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQTVGTGEPWCDVVLAILADGTVLPTLVFYRGQMDQPANVPDSILLEAKESGYSDDEIMELWSSRVWQKHTACQRSKGMLVMDCHRTHLSEEVLAMLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMADTACDSDVLLQLVLVWLAEVLGVIGDCPELVQRSFLVASVLPGPDGNINSPTRNADMQEELIASLEEQLKLSGEQSEEPSASTPRPRSSPEETIEPESLHQLFEGESETESFYGFEEADLDLMEI", "length": 1317, "header": "tr|A0A287ANG0-1|F1ST03_PIG Computationally mapped isoform of Pogo transposable element with ZNF domain OS=Sus scrofa OX=9823 GN=POGZ PE=1 SV=2 CANONICAL=F1ST03-1" }, "locus": { "chromosome": "4", "start_pos": 97831204, "end_pos": 97796455, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000048783.3", "url": "https://www.ensembl.org/id/ENSSSCT00000048783.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045549.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045549.2" } ] } }, { "isoform_ac": "F1ST03-1", "url": "https://www.uniprot.org/uniprotkb/F1ST03/entry#F1ST03-1", "sequence": { "sequence": "MADTDLFMECEEEELEPWQKISDVIEDSVVEDYNSVDKTTTVTVSQQPVSAPVPIAAHASVTGHLSTSTTVSSSGAQNSDSTKKTLVTLIANNNAGNSLVQQGGQPLILTQNPTPGLGTMVTQPVLRPVQVMQNANHVTSSPVASQPIFITTQGFPVRNVRPVQNAMNQVGIVLNVQQGQTVRPITLVPAPGTQFVKPTVGVPQVFSQMTPVRPGSTMPVRPTTNTFTTVIPATLTIRSTVPQSQSQQTKSTPSTSTTPTATQPTSLGQLAVQPPGQSNQTPNPKLAPSFPSPPAVSIASFVTVKRPGVTGENSNEVAKLVNTLNTIPSLGQSPGPVVVSNNSSAHGSQRTSGPESSVKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCPEMVEYQKKGKSLDSEPSVPSAAKPPSPEKTTPVASTPSSTPIPALSPPTKVPEPNENVGDAVQTKLIMLVDDFYYGRDGGKVAQLTNFPKVATSFRCPHCTKRLKNNIRFMNHMKHHVELDQQNGEVDGHTICQHCYRQFSTPFQLQCHLENVHSPYESTTKCKICEWAFESEPLFLQHMKDTHKPGEMPYVCQVCQYRSSLYSEVDVHFRMIHEDTRHLLCPYCLKVFKNGNAFQQHYMRHQKRNVYHCNKCRLQFLFAKDKIEHKLQHHKTFRKPKQLEGLKPGTKVTIRASRGQPRTVPVSSSDAPPSTLQEAAPLASSTDPLPVFLYPPVQRNIQKRAVRKMSVMGRQTCLECSFEIPDFPNHFPTYVHCSLCRYSTCCSRAYANHMINNHVPRKSPKYLALFKNSVSGIKLACTSCTFVTSVGDAMAKHLVFNPSHRSSSILPRGLTWISHSRHGQTRDRLHDRNLKNLYPPPSFPSNKAATVKSVGATPAEPEELPAPMAQAVPSPASTATPPPTPTHPQPLALPLATEGAECLNVEDQDEGSPVTQEPEPASGGGSSSGLGKKEQLSVKKLRVVLFALCCNTEQAAEHFRNPQRRIRRWLRRFQASQGENLEGKYLSLEAEEKLAEWVLTQREQQLPVNEETLFQKATKIGRSLEGGFKISYEWAVRFMLRHHLTPHARRAVAHTLPKDVAENAGLFIEFVQRQIHNQDLPLSMIVAIDEISLFLDTEVLSSDDRKENALQTVGTGEPWCDVVLAILADGTVLPTLVFYRGQMDQPANVPDSILLEAKESGYSDDEIMELWSSRVWQKHTACQRSKGMLVMDCHRTHLSEEVLAMLSASSTLPAVVPAGCSSKIQPLDVCIKRTVKNFLHKKWKEQAREMADTACDSDVLLQLVLVWLAEVLGVIGDCPELVQRSFLVASVLPGPDGNINSPTRNADMQEELIASLEEQLKLSGEQSEEPSASTPRPRSSPEETIEPESLHQLFEGESETESFYGFEEADLDLMEI", "length": 1412, "header": "tr|F1ST03-1|F1ST03_PIG Isoform 1 of Pogo transposable element with ZNF domain OS=Sus scrofa OX=9823 GN=POGZ PE=1 SV=4 CANONICAL=F1ST03-1" }, "locus": { "chromosome": "4", "start_pos": 97831204, "end_pos": 97796455, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007256.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007256.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007061.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007061.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 114, "start_aa": "Thr", "end_pos": 114, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr114", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 435, "start_aa": "Thr", "end_pos": 435, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr435", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 893, "start_aa": "Thr", "end_pos": 893, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr893", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 916, "start_aa": "Thr", "end_pos": 916, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr916", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 920, "start_aa": "Thr", "end_pos": 920, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr920", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A286ZXB6", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXB6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155137", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155137", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "kinetochore assembly", "id": "GO:0051382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051382", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" }, { "name": "mitotic sister chromatid cohesion", "id": "GO:0007064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007064", "evidence": [ { "database": "UniProtKB", "id": "F1ST03", "url": "https://www.uniprot.org/uniprotkb/F1ST03" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST03" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 494, "end_pos": 521, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1ST03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST03" }, { "id": "PS51253", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51253" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HTH CENPB-type", "eco_id": "ECO_0000259", "start_pos": 1014, "end_pos": 1084, "start_aa": "Gly", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 114, 435, 893, 916, 920 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 279, "end_pos": 281 }, { "start_pos": 341, "end_pos": 343 }, { "start_pos": 342, "end_pos": 344 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 5 }, { "field": "total_sites", "count": 5 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 5 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 5 }, { "field": "exact_o_linked_sites", "count": 5 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUS2-1", "uniprot_ac": "F1SUS2", "uniprot_id": "F1SUS2_PIG", "mass": { "chemical_mass": 28626.0, "monoisotopic_mass": 28626.0 }, "refseq": { "ac": "XP_020951078", "name": "adaptin ear-binding coat-associated protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951078" }, "gene_names": [ { "name": "NECAP2", "type": "recommended", "evidence": [ { "id": "F1SUS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUS2" } ] }, { "name": "NECAP2", "type": "synonym", "evidence": [ { "id": "XP_020951078", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951078" } ] } ], "protein_names": [ { "name": "NECAP endocytosis associated 2", "type": "synonym", "evidence": [ { "id": "F1SUS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUS2/entry#names_and_taxonomy" } ] }, { "name": "adaptin ear-binding coat-associated protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951078", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951078" } ] } ], "function": [ { "annotation": "Involved in endocytosis.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC1#function" }, { "database": "UniProtKB", "id": "ARBA00002550", "url": "https://www.uniprot.org/uniprotkb/ARBA00002550#function" }, { "database": "UniProtKB", "id": "A0A286ZXH3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXH3#function" }, { "database": "UniProtKB", "id": "A0A287B045", "url": "https://www.uniprot.org/uniprotkb/A0A287B045#function" }, { "database": "UniProtKB", "id": "F1SUS2", "url": "https://www.uniprot.org/uniprotkb/F1SUS2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUS2", "url": "https://www.uniprot.org/uniprotkb/F1SUS2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NECAP2", "url": "https://www.uniprot.org/uniprotkb/F1SUS2", "locus": { "chromosome": "6", "start_pos": 75546843, "end_pos": 75527108, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003477", "url": "https://www.ensembl.org/id/ENSSSCG00000003477" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003477", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003477", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13228", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13228", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523442", "url": "https://www.ncbi.nlm.nih.gov/gene/100523442", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523442", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523442", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NEGHRAQ", "url": "https://omabrowser.org/oma/group/NEGHRAQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A287B045", "url": "https://www.orthodb.org/?gene=A0A287B045", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SUS2", "url": "https://www.orthodb.org/?gene=F1SUS2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12847", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12847", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12847:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12847:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07933", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07933", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8856825", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8856828", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020951078", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951078", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A286ZXH3", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A286ZXH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A286ZXH3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B045", "url": "https://www.uniprot.org/uniprotkb/A0A287B045", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B045-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B045-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUS2", "url": "https://www.uniprot.org/uniprotkb/F1SUS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPASTGGLSLLPPPPGGRTSTLTAHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATADIWGDFTKSTGSTSSQPQPGTGWVQF", "length": 266, "header": "tr|F1SUS2-1|F1SUS2_PIG Isoform 1 of NECAP endocytosis associated 2 OS=Sus scrofa OX=9823 GN=NECAP2 PE=1 SV=3 CANONICAL=F1SUS2-1" }, "isoforms": [ { "isoform_ac": "A0A286ZXH3-1", "url": "https://www.uniprot.org/uniprotkb/F1SUS2/entry#A0A286ZXH3-1", "sequence": { "sequence": "SRAASSPPRGRSRKSRGLPASRWRKEATSRFSVSSLRCTSTASRRGPPTVVTGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPASTGGLSLLPPPPGGRTSTLTAHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATADIWGDFTKSTG", "length": 239, "header": "tr|A0A286ZXH3-1|F1SUS2_PIG Computationally mapped isoform of NECAP endocytosis associated 2 OS=Sus scrofa OX=9823 GN=NECAP2 PE=1 SV=2 CANONICAL=F1SUS2-1" }, "locus": { "chromosome": "6", "start_pos": 75540494, "end_pos": 75527178, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000046442.3", "url": "https://www.ensembl.org/id/ENSSSCT00000046442.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000036162.2", "url": "https://www.ensembl.org/id/ENSSSCP00000036162.2" } ] } }, { "isoform_ac": "A0A287B045-1", "url": "https://www.uniprot.org/uniprotkb/F1SUS2/entry#A0A287B045-1", "sequence": { "sequence": "MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPASTGGLSLLPPPPGGRTSTLTAHPGEHLSVGGSVIQPAVVPSSGRLPASLSQAPAGFSSDQSTTLSCNFWKGATSSGLKEGG", "length": 261, "header": "tr|A0A287B045-1|F1SUS2_PIG Computationally mapped isoform of NECAP endocytosis associated 2 OS=Sus scrofa OX=9823 GN=NECAP2 PE=1 SV=2 CANONICAL=F1SUS2-1" }, "locus": { "chromosome": "6", "start_pos": 75542074, "end_pos": 75527243, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055689.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055689.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049474.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049474.2" } ] } }, { "isoform_ac": "A0A5G2QGC1-1", "url": "https://www.uniprot.org/uniprotkb/F1SUS2/entry#A0A5G2QGC1-1", "sequence": { "sequence": "MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIAWASWPLRGNPGHSRRTGWDEHLGLARRKLTFNEQQLCAR", "length": 202, "header": "tr|A0A5G2QGC1-1|F1SUS2_PIG Computationally mapped isoform of NECAP endocytosis associated 2 OS=Sus scrofa OX=9823 GN=NECAP2 PE=1 SV=1 CANONICAL=F1SUS2-1" }, "locus": { "chromosome": "6", "start_pos": 75534617, "end_pos": 75527243, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071916.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071916.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062842.1", "url": "https://www.ensembl.org/id/ENSSSCP00000062842.1" } ] } }, { "isoform_ac": "F1SUS2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUS2/entry#F1SUS2-1", "sequence": { "sequence": "MEEGGYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLSFKEGQTIKLNIANMKKKEGAAGTPRARPASTGGLSLLPPPPGGRTSTLTAHPGEHLSVGGSVIQPAVVPSSGGATVSWPQPKPATAATADIWGDFTKSTGSTSSQPQPGTGWVQF", "length": 266, "header": "tr|F1SUS2-1|F1SUS2_PIG Isoform 1 of NECAP endocytosis associated 2 OS=Sus scrofa OX=9823 GN=NECAP2 PE=1 SV=3 CANONICAL=F1SUS2-1" }, "locus": { "chromosome": "6", "start_pos": 75542004, "end_pos": 75527243, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003863.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003863.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003775.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003775.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGC1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGC1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523442", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523442", "resource": "KEGG Pathway" }, { "id": "R-SSC-8856825", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856825", "resource": "Reactome", "description": "Cargo recognition for clathrin-mediated endocytosis" }, { "id": "R-SSC-8856828", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8856828", "resource": "Reactome", "description": "Clathrin-mediated endocytosis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1S0X6-1", "protein_name": "NECAP endocytosis associated 2", "gene_name": "NECAP2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEEDYEAVLCVKPAVHVYRVPPRASNRGYRAAEWQLDQPAWSGRLRITAKGKTAFIKLEDKTSGELFAQAPVEQFPGIAVESVTDSSRYFVLRIEDGNGRRAFIGVGFVDRGDAFDFNVALQDHFKWVRQQNELAKQSENPDQAPKLDLGFKEGQTIKLNIANMKKKEGATGNTRPRPAGPGGLSLLPPPPGGKSSMPTLPSGEQLPSSLSTPTRLPGTPITDSLLSWPQPTAAPSAPTTDVWGDFTKASGSDSNQTQANAGWVQF", "length": 266 }, "evidence": [ { "id": "F1SUS2", "url": "https://omabrowser.org/oma/group/F1SUS2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q681Q7-1", "protein_name": "Uncharacterized protein At1g03900", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAALSGTGKPKPLALAPPPKAAGVTRSPLPPPPNDPVASRIASDGCKESRRNEPLSDLSQLKKNLPSTAGSGSSKSTGAASGWAAF", "length": 272 }, "evidence": [ { "id": "F1SUS2", "url": "https://omabrowser.org/oma/group/F1SUS2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9D1J1-1", "protein_name": "Adaptin ear-binding coat-associated protein 2", "gene_name": "Necap2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEGPKLDLGFKDGQTIKINIANMRKKEGAAGTPRARPTSAGGLSLLPPPPGGKSSTVIPPSGEQLSVGGSLVQPAVVSGSGGATELWPQSKPAAAATADIWGDFTKSTGSPSSQSQPGTGWVQF", "length": 266 }, "evidence": [ { "id": "F1SUS2", "url": "https://omabrowser.org/oma/group/F1SUS2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVZ3-1", "protein_name": "Adaptin ear-binding coat-associated protein 2", "gene_name": "NECAP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPGTAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQGPKLDLGFKEGQTIKLNIANMKKKEGAAGNPRVRPASTGGLSLLPPPPGGKTSTLIPPPGEQLAVGGSLVQPAVAPSSGGAPVPWPQPNPATADIWGDFTKSTGSTSSQTQPGTGWVQF", "length": 263 }, "evidence": [ { "id": "F1SUS2", "url": "https://omabrowser.org/oma/group/F1SUS2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VXB0-1", "protein_name": "NECAP-like protein CG9132", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEYESVLIVKPEVFIYKIPPRASNRGYRAGDWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGVAIEAVSDSSRYFVIRVQDDNGRSAFLGLGFGDRSDSFDLNVALQDHFKWVKNQEQIEKEKTEPKQELDLGFKEGETIKINMRITKKDGSEGSSRTGKNKGSSGVLPPPPGGLGKIAPPPAAAAANTTVRQSPGVSPAHRPAAGGSEWTDYASAGGNQGQQNSANANWVQF", "length": 246 }, "evidence": [ { "id": "F1SUS2", "url": "https://omabrowser.org/oma/group/F1SUS2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "F1SUS2", "url": "https://www.uniprot.org/uniprotkb/F1SUS2" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SUS2", "url": "https://www.uniprot.org/uniprotkb/F1SUS2" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "F1SUS2", "url": "https://www.uniprot.org/uniprotkb/F1SUS2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "clathrin-coated vesicle membrane", "id": "GO:0030665", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030665", "evidence": [ { "database": "UniProtKB", "id": "F1SUS2", "url": "https://www.uniprot.org/uniprotkb/F1SUS2" } ], "pmid": "" }, { "name": "clathrin vesicle coat", "id": "GO:0030125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030125", "evidence": [ { "database": "UniProtKB", "id": "F1SUS2", "url": "https://www.uniprot.org/uniprotkb/F1SUS2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUS2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUS2" }, { "id": "PF07933", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07933" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NECAP PHear", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 162, "start_aa": "Tyr", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST73-1", "uniprot_ac": "F1ST73", "uniprot_id": "F1ST73_PIG", "mass": { "chemical_mass": 35824.0, "monoisotopic_mass": 35824.0 }, "refseq": { "ac": "XP_020921780", "name": "glyoxylate reductase/hydroxypyruvate reductase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921780" }, "gene_names": [ { "name": "GRHPR", "type": "recommended", "evidence": [ { "id": "F1ST73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ] }, { "name": "GRHPR", "type": "synonym", "evidence": [ { "id": "XP_020921780", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921780" } ] } ], "protein_names": [ { "name": "Glyoxylate reductase/hydroxypyruvate reductase", "type": "recommended", "evidence": [ { "id": "F1ST73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST73/entry#names_and_taxonomy" } ] }, { "name": "glyoxylate reductase/hydroxypyruvate reductase", "type": "synonym", "evidence": [ { "id": "XP_020921780", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921780" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GRHPR", "url": "https://www.uniprot.org/uniprotkb/F1ST73", "locus": { "chromosome": "1", "start_pos": 238152382, "end_pos": 238139794, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005349", "url": "https://www.ensembl.org/id/ENSSSCG00000005349" } ] } } ], "crossref": [ { "id": "F1ST73", "url": "https://alphafold.ebi.ac.uk/entry/F1ST73", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005349", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005349", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd05301", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05301", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154014", "url": "https://www.ncbi.nlm.nih.gov/gene/100154014", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006139", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006139", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006140", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006140", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154014", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154014", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PHIAWAY", "url": "https://omabrowser.org/oma/group/PHIAWAY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1ST73", "url": "https://www.orthodb.org/?gene=F1ST73", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10996", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10996", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10996:SF137", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10996:SF137", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00389", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00389", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02826", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02826", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-389661", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389661", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020921780", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921780", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287A1W5", "url": "https://www.uniprot.org/uniprotkb/A0A287A1W5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A1W5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A1W5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST73-1", "url": "https://www.uniprot.org/uniprotkb/F1ST73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRVRLMKVFVTRRIPPEGSATLARAADCEVEQWDSDEPIPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQEAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRTRNTMSVLAANNLLAGLRGEPMPSELKL", "length": 328, "header": "tr|F1ST73-1|F1ST73_PIG Isoform 1 of Glyoxylate reductase/hydroxypyruvate reductase OS=Sus scrofa OX=9823 GN=GRHPR PE=1 SV=3 CANONICAL=F1ST73-1" }, "isoforms": [ { "isoform_ac": "A0A287A1W5-1", "url": "https://www.uniprot.org/uniprotkb/F1ST73/entry#A0A287A1W5-1", "sequence": { "sequence": "MRRVRLMKVFVTRRIPPEGSATLARAADCEVEQWDSDEPIPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQEAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRTRNTMSVLAANNLLAGLRGEPMPSELKL", "length": 289, "header": "tr|A0A287A1W5-1|F1ST73_PIG Computationally mapped isoform of Glyoxylate reductase/hydroxypyruvate reductase OS=Sus scrofa OX=9823 GN=GRHPR PE=1 SV=1 CANONICAL=F1ST73-1" }, "locus": { "chromosome": "1", "start_pos": 238151416, "end_pos": 238139838, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053091.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053091.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000037922.1", "url": "https://www.ensembl.org/id/ENSSSCP00000037922.1" } ] } }, { "isoform_ac": "F1ST73-1", "url": "https://www.uniprot.org/uniprotkb/F1ST73/entry#F1ST73-1", "sequence": { "sequence": "MRRVRLMKVFVTRRIPPEGSATLARAADCEVEQWDSDEPIPSEDLERGVAGAHGLLCLLSDRIDKKLLDTAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWMCGYGLTESTVGIVGLGRIGQAIARRLKPFGVRRFLYTGSQPRPQEAAEFQAEFVPVLQLAAESDFIIVACSLTPATRGLCSKDFYQRMKKTAVFINISRGEVVNQDDLYQALTSGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATYRTRNTMSVLAANNLLAGLRGEPMPSELKL", "length": 328, "header": "tr|F1ST73-1|F1ST73_PIG Isoform 1 of Glyoxylate reductase/hydroxypyruvate reductase OS=Sus scrofa OX=9823 GN=GRHPR PE=1 SV=3 CANONICAL=F1ST73-1" }, "locus": { "chromosome": "1", "start_pos": 238151416, "end_pos": 238139838, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005888.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005888.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005741.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005741.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A1W5", "url": "https://www.uniprot.org/uniprotkb/A0A287A1W5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154014", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154014", "resource": "KEGG Pathway" }, { "id": "R-SSC-389661", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389661", "resource": "Reactome", "description": "Glyoxylate metabolism and glycine degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1NGN7-1", "protein_name": "Glyoxylate reductase/hydroxypyruvate reductase", "gene_name": "GRHPR", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRPVRLMKVFITRRIPPEGSAALARAADCEVEQWDSDEPIPREDLEQRMAGAQGLLCLLSDRIDKKLLDAAGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPENAQWGRCGGWTSWKPLWMCGHGLSQSTVGIVGLGRIGQAIARRLKPFGVRRFLYTGRQPRPQEAAEFQAEFVSTPKLAAESDFIVVACSLTPATRGLCNKDFFQWMKKTAVFVNISRGEVVDQDDLYQALASGQIAAAGLDVTTPEPLPTNHPLLTLKNCVILPHIGSATHRTRNIMSVLAADNLLAGLRGEPMPSELKL", "length": 328 }, "evidence": [ { "id": "F1ST73", "url": "https://omabrowser.org/oma/group/F1ST73/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8J8XIM5-1", "protein_name": "Glyoxylate reductase/hydroxypyruvate reductase", "gene_name": "Grhpr", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ARLVNVCSCGSCETRATHEGVRHWPFAGPGQGCARPGHRVSARVGVGSAAEPLARCPVHPTSDTPAAALGRSCEVEQWNSDDPIPSKDLEQGVAGAYGLLCRLSDRVDKKLLDAAGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEVKNGGWSSWSPLWMCGYGLSESTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEFQAEFVPIAQLAAESDFIVVSCSLTPATRGLCNKDFFQKMKNTAVFINISRGDVVNQEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMSLLAANNLLAGLRGEPMPSELKL", "length": 372 }, "evidence": [ { "id": "F1ST73", "url": "https://omabrowser.org/oma/group/F1ST73/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P53839-1", "protein_name": "Glyoxylate reductase 1", "gene_name": "GOR1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSKKPIVLKLGKDAFGDQAWGELEKIADVITIPESTTREQFLREVKDPQNKLSQVQVITRTARSVKNTGRFDEELALALPSSVVAVCHTGAGYDQIDVEPFKKRHIQVANVPDLVSNATADTHVFLLLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRCILERLKPFGFENFIYHNRHQLPSEEEHGCEYVGFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEPKISKELLSMSQVLGLPHMGTHSVETRKKMEELVVENAKNVILTGKVLTIVPELQNEDWPNESKPLV", "length": 350 }, "evidence": [ { "id": "F1ST73", "url": "https://omabrowser.org/oma/group/F1ST73/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8I725-1", "protein_name": "Glyoxylate reductase/hydroxypyruvate reductase", "gene_name": "Dmel\\CG1236", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MPPRLPFGQVRNLLIQGHIIRRMSSQHKVYVTRPDVDDSGLELLRKSCQVSTWHETNPVPRSELIRVVAGKDALYCALTDKVDKEVLDAAGPQLKCVATISVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALLLATNRRLFEANKQVYNGGWKSWAPMWMCGQGLKGSRVGLLGFGRIGQEIAARIVPFKPTEITYTTRSLRPKEAAAVNARHVDFDEMLRESDLIVVCCALTPETKEIFNATAFQKMKPNCILINTARGGVVDQKALYEALKTKRILAAGLDVTTPEPLPIDDPLLKLDNVVILPHIGSADIETRKEMSRITARNILAALAGDKMVAEVEL", "length": 347 }, "evidence": [ { "id": "F1ST73", "url": "https://omabrowser.org/oma/group/F1ST73/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q91Z53-1", "protein_name": "Glyoxylate reductase/hydroxypyruvate reductase", "gene_name": "Grhpr", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPARLMKVFVTGPLPAEGRAALAQAADCEVEQWNSDDPIPRKDLEQGVVGAHGLLCRLSDRVDKKLLDAAGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAIEEVKNGGWSSWSPLWMCGYGLSQSTVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEFQAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVNQEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMSLLAANNLLAGLRGEAMPSELKL", "length": 328 }, "evidence": [ { "id": "F1ST73", "url": "https://omabrowser.org/oma/group/F1ST73/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CA90-1", "protein_name": "Glyoxylate/hydroxypyruvate reductase A HPR2", "gene_name": "HPR2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MESIGVLMMCPMSSYLENELEKRFNLLRFWTSPEKSVLLETHRNSIRAVVGNASAGADAQLISDLPNLEIVSSFSVGLDKIDLGKCKEKGIRVTNTPDVLTEDVADLAIGLILALLRRLCECDRYVRSGKWKQGEFQLTTKFSGKSVGIIGLGRIGTAIAKRAEAFSCPINYYSRTIKPDVAYKYYPTVVDLAQNSDILVVACPLTEQTRHIVDRQVMDALGAKGVLINIGRGPHVDEQELIKALTEGRLGGAALDVFEQEPHVPEELFGLENVVLLPHVGSGTVETRNAMADLVVGNLEAHFSGKSLLTPVV", "length": 313 }, "evidence": [ { "id": "F1ST73", "url": "https://omabrowser.org/oma/group/F1ST73/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9UBQ7-1", "protein_name": "Glyoxylate reductase/hydroxypyruvate reductase", "gene_name": "GRHPR", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPVRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELKL", "length": 328 }, "evidence": [ { "id": "F1ST73", "url": "https://omabrowser.org/oma/group/F1ST73/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "NAD binding", "id": "GO:0051287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051287", "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "pmid": "" }, { "name": "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor", "id": "GO:0016616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016616", "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "pmid": "" }, { "name": "hydroxypyruvate reductase (NADH) activity", "id": "GO:0008465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008465", "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "pmid": "" }, { "name": "glyoxylate reductase (NADPH) activity", "id": "GO:0030267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030267", "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "pmid": "" }, { "name": "NADPH binding", "id": "GO:0070402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070402", "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "pmid": "" }, { "name": "catalytic complex", "id": "GO:1902494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902494", "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "glyoxylate metabolic process", "id": "GO:0046487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046487", "evidence": [ { "database": "UniProtKB", "id": "F1ST73", "url": "https://www.uniprot.org/uniprotkb/F1ST73" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1ST73-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 328, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1ST73-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1ST73" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST73" }, { "id": "PF02826", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding", "eco_id": "ECO_0000259", "start_pos": 117, "end_pos": 295, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1ST73", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST73" }, { "id": "PF00389", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00389" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "D-isomer specific 2-hydroxyacid dehydrogenase catalytic", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 326, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 242, "end_pos": 244 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L612-1", "uniprot_ac": "I3L612", "uniprot_id": "I3L612_PIG", "mass": { "chemical_mass": 183903.0, "monoisotopic_mass": 183903.0 }, "refseq": {}, "gene_names": [ { "name": "ABCA8", "type": "recommended", "evidence": [ { "id": "I3L612", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ] } ], "protein_names": [ { "name": "ATP binding cassette subfamily A member 8", "type": "synonym", "evidence": [ { "id": "I3L612", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ABCA8", "url": "https://www.uniprot.org/uniprotkb/I3L612", "locus": { "chromosome": "12", "start_pos": 11447295, "end_pos": 11373238, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026473", "url": "https://www.ensembl.org/id/ENSSSCG00000026473" } ] } } ], "crossref": [ { "id": "ENSSSCG00000026473", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026473", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03263", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03263", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017871", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017871", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056264", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056264", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19229", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19229", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19229:SF274", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19229:SF274", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00005", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00005", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12698", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12698", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23321", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23321", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26955", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26955", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-382556", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287A2L4", "url": "https://www.uniprot.org/uniprotkb/A0A287A2L4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A2L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A2L4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QWS4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCH7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLM7", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNL9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L612-1", "url": "https://www.uniprot.org/uniprotkb/I3L612-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9I3", "url": "https://www.uniprot.org/uniprotkb/I3L9I3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L9I3-1", "url": "https://www.uniprot.org/uniprotkb/I3L9I3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDW8", "url": "https://www.uniprot.org/uniprotkb/I3LDW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LDW8-1", "url": "https://www.uniprot.org/uniprotkb/I3LDW8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLP1", "url": "https://www.uniprot.org/uniprotkb/I3LLP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLP1-1", "url": "https://www.uniprot.org/uniprotkb/I3LLP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKREMSVCQQTGALLCKNFLKKWRMKREPIMEWLIALFLLLALYLYPHVHEVNDFSSLPPMDLGQVDSFNASQSEIAYTPVTNTTLQIMNIVASASFMKDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHQVWNILKERKTDRVILFSTQFMDEADILADRKVFLSKGRLKCAGSSLFLKKKWGIGYHLSLQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQIPCTFGYATSLIFLTYVISFIFRKGKKNSGIWSFCFYIITILAVLGLLFDDSEHSALYAIAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGAIQHLKNKFGKNYLLEMKVKTPTQEETLHSEILRLFPQAARQERFSSLMVYKLPVEDVRPLAQAFFKLENVKQRFDLEEYSLSQSTLEQVFLELSKEQELDDLKEELHPSVKWKLLPQEEP", "length": 1627, "header": "tr|I3L612-1|I3L612_PIG Isoform 1 of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=3 CANONICAL=I3L612-1" }, "isoforms": [ { "isoform_ac": "A0A287A2L4-1", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#A0A287A2L4-1", "sequence": { "sequence": "MDLGQVDSFNASQSEIAYTPVTNTTLQIMNIVASASFMKDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHQVWNILKERKTDRVILFSTQFMDEADILADRKVFLSKGRLKCAGSSLFLKKKWGIGYHLSLQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQIPCTFGYATSLIFLTYVISFIFRKGKKNSGIWSFCFYIITILAVLGLLFDDSEHSALYAIAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGAIQHLKNKFGKNYLLEMKVKTPTQEETLHSEILRLFPQAARQERFSSLMVYKLPVEDVRPLAQAFFKLENVKQRFDLEEYSLSQSTLEQVFLELSKEQELDDLKEELHPSVKWKLLPQEEP", "length": 1566, "header": "tr|A0A287A2L4-1|I3L612_PIG Computationally mapped isoform of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=1 CANONICAL=I3L612-1" }, "locus": { "chromosome": "12", "start_pos": 11447017, "end_pos": 11377602, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000054209.3", "url": "https://www.ensembl.org/id/ENSSSCT00000054209.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038159.1", "url": "https://www.ensembl.org/id/ENSSSCP00000038159.1" } ] } }, { "isoform_ac": "A0A5G2QWS4-1", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#A0A5G2QWS4-1", "sequence": { "sequence": "MDLGQVDSFNASQSEIAYTPVTNTTLQIMNIVASASFMKDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHQVWNILKERKTDRVILFSTQFMDEADILADRKVFLSKGRLKCAGSSLFLKKKWGIGYHLSLQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQIPCTFGYATSLIFLTYVISFIFRKGKKNSGIWSFCFYIFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGAIQHLKNKFGKNYLLEMKVKTPTQEETLHSEILRLFPQAARQERFSSLMVYKLPVEDVRPLAQAFFKLENVKQRFDLEEYSLSQSTLEQVFLELSKEQELDDLKEELHPSVKWKLLPQEEP", "length": 1526, "header": "tr|A0A5G2QWS4-1|I3L612_PIG Computationally mapped isoform of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=2 CANONICAL=I3L612-1" }, "locus": { "chromosome": "12", "start_pos": 11447017, "end_pos": 11377602, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074712.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074712.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000062634.2", "url": "https://www.ensembl.org/id/ENSSSCP00000062634.2" } ] } }, { "isoform_ac": "A0A8W4FCH7-1", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#A0A8W4FCH7-1", "sequence": { "sequence": "MSKREMSVCQQTGALLCKNFLKKWRMKREPIMEWLIALFLLLALYLYPHVHEVNDFSSLPPMDLGQVDSFNASQSEIAYTPVTNTTLQIMNIVASASFMKDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHQVWNILKERKTDRVILFSTQFMDEADILADRKVFLSKGRLKCAGSSLFLKKKWGIGYHLSLQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQIPCTFGYATSLIFLTYVISFIFRKGKKNSGIWSFCFYIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGAIQHLKNKFGKNYLLEMKVKTPTQEETLHSEILRLFPQAARQERFSSLMVYKLPVEDVRPLAQAFFKLENVKQRFDLEEYSLSQSTLEQVFLELSKEQELDDLKEELHPSVKWKLLPQEEP", "length": 1565, "header": "tr|A0A8W4FCH7-1|I3L612_PIG Computationally mapped isoform of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=1 CANONICAL=I3L612-1" }, "locus": { "chromosome": "12", "start_pos": 11447017, "end_pos": 11376115, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099681.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099681.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076968.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076968.1" } ] } }, { "isoform_ac": "A0A8W4FLM7-1", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#A0A8W4FLM7-1", "sequence": { "sequence": "MSKREMSVCQQTGALLCKNFLKKWRMKREPIMEWLIALFLLLALYLYPHVHEVNDFSSLPPMDLGQVDSFNASQSEIAYTPVTNTTLQIMNIVASASFMKDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHQVWNILKERKTDRVILFSTQFMDEADILADRKVFLSKGRLKCAGSSLFLKKKWGIGYHLSLQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQIPCTFGYATSLIFLTYVISFIFRKGKKNSGIWSFCFYIITILAVLGLLFDDSEHSALYAIAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIASCASR", "length": 1410, "header": "tr|A0A8W4FLM7-1|I3L612_PIG Computationally mapped isoform of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=1 CANONICAL=I3L612-1" }, "locus": { "chromosome": "12", "start_pos": 11442475, "end_pos": 11376115, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098718.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098718.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080376.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080376.1" } ] } }, { "isoform_ac": "A0A8W4FNL9-1", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#A0A8W4FNL9-1", "sequence": { "sequence": "MSKREMSVCQQTGALLCKNFLKKWRMKREPIMEWLIALFLLLALYLYPHVHEVNDFSSLPPMDLGQVDSFNASQSEIAYTPVTNTTLQIMNIVASASFMKDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQIPCTFGYATSLIFLTYVISFIFRKGKKNSGIWSFCFYIITILAVLGLLFDDSEHSALYAIAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGAIQHLKNKFGKNYLLEMKVKTPTQEETLHSEILRLFPQAARQERFSSLMVYKLPVEDVRPLAQAFFKLENVKQRFDLEEYSLSQSTLEQVFLELSKEQELDDLKEELHPSVKWKLLPQEEP", "length": 1548, "header": "tr|A0A8W4FNL9-1|I3L612_PIG Computationally mapped isoform of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=1 CANONICAL=I3L612-1" }, "locus": { "chromosome": "12", "start_pos": 11447017, "end_pos": 11376115, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000098074.1", "url": "https://www.ensembl.org/id/ENSSSCT00000098074.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080787.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080787.1" } ] } }, { "isoform_ac": "I3L612-1", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#I3L612-1", "sequence": { "sequence": "MSKREMSVCQQTGALLCKNFLKKWRMKREPIMEWLIALFLLLALYLYPHVHEVNDFSSLPPMDLGQVDSFNASQSEIAYTPVTNTTLQIMNIVASASFMKDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHQVWNILKERKTDRVILFSTQFMDEADILADRKVFLSKGRLKCAGSSLFLKKKWGIGYHLSLQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQIPCTFGYATSLIFLTYVISFIFRKGKKNSGIWSFCFYIITILAVLGLLFDDSEHSALYAIAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGAIQHLKNKFGKNYLLEMKVKTPTQEETLHSEILRLFPQAARQERFSSLMVYKLPVEDVRPLAQAFFKLENVKQRFDLEEYSLSQSTLEQVFLELSKEQELDDLKEELHPSVKWKLLPQEEP", "length": 1627, "header": "tr|I3L612-1|I3L612_PIG Isoform 1 of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=3 CANONICAL=I3L612-1" }, "locus": { "chromosome": "12", "start_pos": 11447017, "end_pos": 11376115, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030371.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030371.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019463.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019463.3" } ] } }, { "isoform_ac": "I3L9I3-1", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#I3L9I3-1", "sequence": { "sequence": "MSKREMSVCQQTGALLCKNFLKKWRMKREPIMEWLIALFLLLALYLYPHVHEVNDFSSLPPMDLGQVDSFNASQSEIAYTPVTNTTLQIMNIVASASFMKDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHQVWNILKERKTDRVILFSTQFMDEADILADRKVFLSKGRLKCAGSSLFLKKKWGIGYHLSLQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQITILAVLGLLFDDSEHSALYAIAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGAIQHLKNKFGKNYLLEMKVKTPTQEETLHSEILRLFPQAARQERFSSLMVYKLPVEDVRPLAQAFFKLENVKQRFDLEEYSLSQSTLEQVFLELSKEQELDDLKEELHPSVKWKLLPQEEP", "length": 1589, "header": "tr|I3L9I3-1|I3L9I3_PIG Computationally mapped isoform of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=2 CANONICAL=I3L612-1" }, "locus": { "chromosome": "12", "start_pos": 11447017, "end_pos": 11376115, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032075.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032075.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020695.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020695.2" } ] } }, { "isoform_ac": "I3LDW8-1", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#I3LDW8-1", "sequence": { "sequence": "MENEERAHNDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHQVWNILKERKTDRVILFSTQFMDEADILADRKVFLSKGRLKCAGSSLFLKKKWGIGYHLSLQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQIPCTFGYATSLIFLTYVISFIFRKGKKNSGIWSFCFYIITILAVLGLLFDDSEHSALYAIAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGAIQHLKNKFGKNYLLEMKVKTPTQEETLHSEILRLFPQAARQERFSSLMVYKLPVEDVRPLAQAFFKLENVKQRFDLEEYSLSQSTLEQVFLELSKEQELDDLKEELHPSVKWKLLPQEEP", "length": 1536, "header": "tr|I3LDW8-1|I3L612_PIG Computationally mapped isoform of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=3 CANONICAL=I3L612-1" }, "locus": { "chromosome": "12", "start_pos": 11447017, "end_pos": 11376183, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028944.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028944.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022253.3", "url": "https://www.ensembl.org/id/ENSSSCP00000022253.3" } ] } }, { "isoform_ac": "I3LLP1-1", "url": "https://www.uniprot.org/uniprotkb/I3L612/entry#I3LLP1-1", "sequence": { "sequence": "MDLGQVDSFNASQSEIAYTPVTNTTLQIMNIVASASFMKDTEVLGLSNEESIKKLTADHPEEIIGVIFTDTFAYHLKFSPGHRIPVRKEHMDHTAHCYEMNEAVDCEVSEFWKKGFVAVQAAINAAIIEFTTNQSVMEQLMSVTGKNMKIHPFISQGGIATDVFIFFCVISFAPFTYYASINVTRERKKMKGLMTMMGLRDSAFWLSWGLLYAGFIFIMALFLTLIVKSAQFIILSGFVVIFALFLLYGLSLIALTFLMSVLVKKSFLTGLTVFLLTVFCGSLGFMALYRYLPASLEWILSFLSPFAFMLGMTQLLRSDYDLNSNALLDASDSSNLIIATNFVLTFDIFFYLALAIYFDRILSSEYGHRYSPLFFLKSSFRSKQQRTDHIALEDELDSNPSSNDSFEPMSPEFHGKEAIRIRNVTKEYKGKPDKIEALKDLAFDIYEGQITAILGHSGAGKSTLLNILSGLSVPTKGSVTIYDNKLSQTAYLENISKLTGVCPQINVQFDFLTVRENLRLFAKIKGIQPHEIDKEVQRVLLELEMKNIQDILAQNLSGGQKRKLTFGIAILGDPQIFLLDEPTAGLDPFSRHQVWNILKERKTDRVILFSTQFMDEADILADRKVFLSKGRLKCAGSSLFLKKKWGIGYHLSLQLNEMCVQEKITSLVKQHIPDAKLSAESEGKLVYTLPLERTHKFPELYEDLDRCPGLGIENYGVSMTTLNEVFLKLEGKSSLDESDSANLGEVPAERSGDTERLVEMEQYLSLLNEPRQTISGLALWGQQIRAIGRVRLLKLKHERKALLSLLLILVVGFCPLLLEYIIMKIHQNSYTWELSPDLYFLAPGQQPRDPLTQLLIINKTGASIDDFIHAVENQNIALEVDVLGTRNGLDDPSYNGAIIVSGSEKNYSFSLACNTKRLTCFPVLMDIVSNGLLGLAEPSAHIQTERSTFLEKDQDNSFESLGYTMFWLTLSSCCAPYIAMSSIDDYKNKARSQLRISGLSPSAYWFGQALVDVPMYCLIFVFMYLMSYSLSLQDGLNIYNLFGVIIWIIQIPCTFGYATSLIFLTYVISFIFRKGKKNSGIWSFCFYIITILAVLGLLFDDSEHSALYAIAFLIPQATLIGYLFLVFHFSMFYYLDEESRTIEPFLVSLIPFLHFITFLFILRCLEWKFGKTSMRKDPFFRISPRRSDVCPNPEEPEGEDEDVQMERRRTADALNSTNFDEKPVIIASCLRKEYTGKRKRCLSKRKKKIAARHVSFCVRKGEVLGLLGHNGAGKSTSIKVITGDTKPTAGQVLLKGSSGGDPLGFLGYCPQENALWPSLTVKEHLEVFAAVKGLRKADAAAAIARLVDALKLQDQLKLPTKALSEGIKRKLCFALSILGNPSVVLLDEPSTGMDPEGQQQMWQAIRATFKNTERGALLTTHYMAEAEAVCDRFVAVKASACIGAIQHLKNKFGKNYLLEMKVKTPTQEETLHSEILRLFPQAARQERFSSLMVYKLPVEDVRPLAQAFFKLENVKQRFDLEEYSLSQSTLEQVFLELSKEQELDDLKEELHPSVKWKLLPQEEP", "length": 1564, "header": "tr|I3LLP1-1|I3L612_PIG Computationally mapped isoform of ATP binding cassette subfamily A member 8 OS=Sus scrofa OX=9823 GN=ABCA8 PE=1 SV=3 CANONICAL=I3L612-1" }, "locus": { "chromosome": "12", "start_pos": 11447017, "end_pos": 11377602, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031089.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031089.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025011.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025011.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QWS4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QWS4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-382556", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "resource": "Reactome", "description": "ABC-family protein mediated transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "ABC-type transporter activity", "id": "GO:0140359", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140359", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "lipid transporter activity", "id": "GO:0005319", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005319", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "ATPase-coupled transmembrane transporter activity", "id": "GO:0042626", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042626", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "ABC-type xenobiotic transporter activity", "id": "GO:0008559", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008559", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "sphingomyelin biosynthetic process", "id": "GO:0006686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006686", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "positive regulation of cholesterol efflux", "id": "GO:0010875", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010875", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" }, { "name": "xenobiotic transmembrane transport", "id": "GO:0006855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006855", "evidence": [ { "database": "UniProtKB", "id": "I3L612", "url": "https://www.uniprot.org/uniprotkb/I3L612" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1276, "end_pos": 1278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 194, "end_pos": 196, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 555, "end_pos": 557, "annotation": "n_glycosylation_sequon" }, { "start_pos": 616, "end_pos": 618, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" }, { "start_pos": 919, "end_pos": 921, "annotation": "n_glycosylation_sequon" }, { "start_pos": 967, "end_pos": 969, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L612", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L612" }, { "id": "PS50893", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50893" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ABC transporter", "eco_id": "ECO_0000259", "start_pos": 480, "end_pos": 715, "start_aa": "Ile", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1276, "end_pos": 1278 }, { "start_pos": 194, "end_pos": 196 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 464, "end_pos": 466 }, { "start_pos": 484, "end_pos": 486 }, { "start_pos": 555, "end_pos": 557 }, { "start_pos": 616, "end_pos": 618 }, { "start_pos": 71, "end_pos": 73 }, { "start_pos": 84, "end_pos": 86 }, { "start_pos": 919, "end_pos": 921 }, { "start_pos": 967, "end_pos": 969 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUY7-1", "uniprot_ac": "F1SUY7", "uniprot_id": "F1SUY7_PIG", "mass": { "chemical_mass": 99404.0, "monoisotopic_mass": 99404.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Transient receptor ion channel domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SUY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SUY7", "locus": {} } ], "crossref": [ { "id": "F1SUY7", "url": "https://alphafold.ebi.ac.uk/entry/F1SUY7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014799", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014799", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005458", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005458", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013555", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013555", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056336", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056336", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10117", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10117", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10117:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10117:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23317", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23317", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287A4A1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4A1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287A4A1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4A1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUY7-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "PDSRGPPPNWPEIVNRKLQFPPPLLGAIQEGRLGLVQQLLESGAEAPGGGPGGPPRNVEEAEDRSWREALNLAIRLGHEAITDVLLANVKFDFRQIHEALLVAVDTNQPAVVRRLLARLEREKGRKVDTRSFSLAFFDSSIDGSRFAPGVTPLTLACQKDLYEIAQLLMDQGHTIARPHPVSCACLECSNARRYDLLKFSLSRINTYRGIASRAHLSLASEDALLAAFQLSRELRCLARKEPEFKPEYIALESLSQDYGFELLGMCRNQSEVTAVLNDLGKDSGAEPEAEGLGQAFEEGIPNLARLRLAVNYNQKRFVAHPICQQVLSSIWCGNLAGWRGSTIVWKLFVALLIFLAMPFLCLGYWLAPKSRLGRLLKIPVLKFLLHSASYLWFLIFLLGESLAMETQLSTFRGRSRSVWETSLHMVWVTGFLWFECKEVWIEGLRSYLLDWWNFLDMVILSLYLAAFALRLLLAGLAHVHCKDAPDGAACRYFTTAERREWRTEDPQFLAEVLFAVTSMLSFTRLAYILPAHESLGTLQISIGRMIDDMIRFMFILMIILTAFLCGLNNIYVPYQETERLGKFNETFQFLFWTMLGMEERSVVDMPQFPVPEFVGRALYGTFTIVMVVVLLNMLIAMITGSFQKIEDAADVEWKFARSKLYLSYFREGLTLPVPFNILPSPKAVFYLLRRIFRFICCCCSCCKAKRPDHPPVPTFANPGAGPGSGEGEPGSYRLRVLKALVQRYIETARREFEESRRKDLGNRLTELTKTVSRLQSEVAGVHRALAEGGMRQPPDGASILSRYITRVRNSFQNLGPPIPETPELTVPGVVGTQVTSEMGLQDAGGARRPASGESGPASPARVLVHREQESEQAGDLAKADELGAKEGS", "length": 888, "header": "tr|F1SUY7-1|F1SUY7_PIG Isoform 1 of Transient receptor ion channel domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1SUY7-1" }, "isoforms": [ { "isoform_ac": "A0A287A4A1-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY7/entry#A0A287A4A1-1", "sequence": { "sequence": "MDPLTPPPNWPEIVNRKLQFPPPLLGAIQEGRLGLVQQLLESGAEAPGGGPGGPPRNVEEAEDRSWREALNLAIRLGHEAITDVLLANVKFDFRQIHEALLVAVDTNQPAVVRRLLARLEREKGRKVDTRSFSLAFFDSSIDGSRFAPGVTPLTLACQKDLYEIAQLLMDQGHTIARPHPVSCACLECSNARRYDLLKFSLSRINTYRGIASRAHLSLASEDALLAAFQLSRELRCLARKEPEFKPEYIALESLSQDYGFELLGMCRNQSEVTAVLNDLGKDSGAEPEAEGLGQAFEEGIPNLARLRLAVNYNQKRFVAHPICQQVLSSIWCGNLAGWRGSTIVWKLFVALLIFLAMPFLCLGYWLAPKSRLGRLLKIPVLKFLLHSASYLWFLIFLLGESLAMETQLSTFRGRSRSVWETSLHMVWVTGFLWFECKEVWIEGLRSYLLDWWNFLDMVILSLYLAAFALRLLLAGLAHVHCKDAPDGAACRYFTTAERREWRTEDPQFLAEVLFAVTSMLSFTRLAYILPAHESLGTLQISIGRMIDDMIRFMFILMIILTAFLCGLNNIYVPYQETERLGKFNETFQFLFWTMLGMEERSVVDMPQFPVPEFVGRALYGTFTIVMVVVLLNMLIAMITGSFQKIEDAADVEWKFARSKLYLSYFREGLTLPVPFNILPSPKAVFYLLRWRIFRFICCCCSCCKAKRPDHPPVPTFANPGAGPGSGEGEPGSYRLRVLKALVQRYIETARREFEESRRKDLGNRLTELTKTVSRLQSEVAGVHRALAEGGMRQPPDGASILSRYITRVRNSFQNLGPPIPETPELTVPGVVGTQVTSEMGLQDAGGARRPASGESGPASPARVLVHREQESEQAGDLAKADELGAKEGS", "length": 889, "header": "tr|A0A287A4A1-1|F1SUY7_PIG Computationally mapped isoform of Transient receptor ion channel domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=F1SUY7-1" }, "locus": { "chromosome": "9", "start_pos": 6469881, "end_pos": 6449770, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063469.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063469.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038592.3", "url": "https://www.ensembl.org/id/ENSSSCP00000038592.3" } ] } }, { "isoform_ac": "F1SUY7-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY7/entry#F1SUY7-1", "sequence": { "sequence": "PDSRGPPPNWPEIVNRKLQFPPPLLGAIQEGRLGLVQQLLESGAEAPGGGPGGPPRNVEEAEDRSWREALNLAIRLGHEAITDVLLANVKFDFRQIHEALLVAVDTNQPAVVRRLLARLEREKGRKVDTRSFSLAFFDSSIDGSRFAPGVTPLTLACQKDLYEIAQLLMDQGHTIARPHPVSCACLECSNARRYDLLKFSLSRINTYRGIASRAHLSLASEDALLAAFQLSRELRCLARKEPEFKPEYIALESLSQDYGFELLGMCRNQSEVTAVLNDLGKDSGAEPEAEGLGQAFEEGIPNLARLRLAVNYNQKRFVAHPICQQVLSSIWCGNLAGWRGSTIVWKLFVALLIFLAMPFLCLGYWLAPKSRLGRLLKIPVLKFLLHSASYLWFLIFLLGESLAMETQLSTFRGRSRSVWETSLHMVWVTGFLWFECKEVWIEGLRSYLLDWWNFLDMVILSLYLAAFALRLLLAGLAHVHCKDAPDGAACRYFTTAERREWRTEDPQFLAEVLFAVTSMLSFTRLAYILPAHESLGTLQISIGRMIDDMIRFMFILMIILTAFLCGLNNIYVPYQETERLGKFNETFQFLFWTMLGMEERSVVDMPQFPVPEFVGRALYGTFTIVMVVVLLNMLIAMITGSFQKIEDAADVEWKFARSKLYLSYFREGLTLPVPFNILPSPKAVFYLLRRIFRFICCCCSCCKAKRPDHPPVPTFANPGAGPGSGEGEPGSYRLRVLKALVQRYIETARREFEESRRKDLGNRLTELTKTVSRLQSEVAGVHRALAEGGMRQPPDGASILSRYITRVRNSFQNLGPPIPETPELTVPGVVGTQVTSEMGLQDAGGARRPASGESGPASPARVLVHREQESEQAGDLAKADELGAKEGS", "length": 888, "header": "tr|F1SUY7-1|F1SUY7_PIG Isoform 1 of Transient receptor ion channel domain-containing protein OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1SUY7-1" }, "locus": { "chromosome": "9", "start_pos": 6468294, "end_pos": 6449770, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016150.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016150.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015718.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015718.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287A4A1", "url": "https://www.uniprot.org/uniprotkb/A0A287A4A1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "inositol 1,4,5 trisphosphate binding", "id": "GO:0070679", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070679", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" }, { "name": "diacylglycerol binding", "id": "GO:0019992", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019992", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" }, { "name": "store-operated calcium channel activity", "id": "GO:0015279", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015279", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" }, { "name": "dendrite membrane", "id": "GO:0032590", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032590", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" }, { "name": "cation channel complex", "id": "GO:0034703", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034703", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of cytosolic calcium ion concentration", "id": "GO:0051480", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051480", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" }, { "name": "single fertilization", "id": "GO:0007338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007338", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" }, { "name": "calcium ion transmembrane transport", "id": "GO:0070588", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070588", "evidence": [ { "database": "UniProtKB", "id": "F1SUY7", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 268, "end_pos": 270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 584, "end_pos": 586, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUY7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 888, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUY7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUY7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY7" }, { "id": "SM01420", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01420" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transient receptor ion channel", "eco_id": "ECO_0000259", "start_pos": 183, "end_pos": 245, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 268, "end_pos": 270 }, { "start_pos": 584, "end_pos": 586 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L802-1", "uniprot_ac": "I3L802", "uniprot_id": "I3L802_PIG", "mass": { "chemical_mass": 65891.0, "monoisotopic_mass": 65891.0 }, "refseq": { "ac": "XP_020933765", "name": "protein CBFA2T2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933765" }, "gene_names": [ { "name": "CBFA2T2", "type": "recommended", "evidence": [ { "id": "I3L802", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ] }, { "name": "CBFA2T2", "type": "synonym", "evidence": [ { "id": "XP_020933765", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933765" } ] } ], "protein_names": [ { "name": "CBFA2/RUNX1 partner transcriptional co-repressor 2", "type": "synonym", "evidence": [ { "id": "I3L802", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L802/entry#names_and_taxonomy" } ] }, { "name": "protein CBFA2T2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020933765", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933765" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CBFA2T2", "url": "https://www.uniprot.org/uniprotkb/I3L802", "locus": { "chromosome": "17", "start_pos": 37150387, "end_pos": 36990070, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027410", "url": "https://www.ensembl.org/id/ENSSSCG00000027410" } ] } } ], "crossref": [ { "id": "ENSSSCG00000027410", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027410", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157067", "url": "https://www.ncbi.nlm.nih.gov/gene/100157067", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013289", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013289", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WKHLDHX", "url": "https://omabrowser.org/oma/group/WKHLDHX/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L802", "url": "https://www.orthodb.org/?gene=I3L802", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10379", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10379", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10379:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10379:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07531", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07531", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020933765", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020933765", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AC71", "url": "https://www.uniprot.org/uniprotkb/A0A287AC71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AC71-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AC71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L802-1", "url": "https://www.uniprot.org/uniprotkb/I3L802-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGVPGAAAFQLGADKRVPAMPGSPVEVKIQSRSSPPTMPPLPPINPGGPRPVSFTPTALSNGINHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKLKRFLTTLQQFGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARAAKQTPSQYLAQHEHLLLNTSIASPADSSELLMEVHGNGKRPSPERREESSFERDTVPPEPPAKRVCTISPAPRHSPALTVPLMNPAGQFHPTPPPLQHYTLEDIATSHLYREPNKMLEHREVRDRHHNLSLNGGYQDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQESDREELNYWKRRYNENTEMRKTGSEMVSRQHSPGGTDSLSNDSQREFSSRPGTGYVPVEFWKKTEEAVNKVKIQAMSEVQKAVAEAEQKAFEVIATERARMEQTIADVKRQAAEDAFLVINEQEESTENCWNCGRKASETCSGCNIARYCGSFCQHKDWERHHRLCGQNLHGQSPHSQGRPLLPGGRGSSARSADCSVPSPALDKTSATTSRSSTPASVTAIDTNGL", "length": 595, "header": "tr|I3L802-1|I3L802_PIG Isoform 1 of CBFA2/RUNX1 partner transcriptional co-repressor 2 OS=Sus scrofa OX=9823 GN=CBFA2T2 PE=3 SV=2 CANONICAL=I3L802-1" }, "isoforms": [ { "isoform_ac": "A0A287AC71-1", "url": "https://www.uniprot.org/uniprotkb/I3L802/entry#A0A287AC71-1", "sequence": { "sequence": "GADKRVPAMPGSPVEVKIQSRSSPPTMPPLPPINPGGPRPVSFTPTALSNGINHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKLKRFLTTLQQFGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARAAKQTPSQYLAQHEHLLLNTSIASPADSSELLMEVHGNGKRPSPERREESSFERDTVPPEPPAKRVCTISPAPRHSPALTVPLMNPAGQFHPTPPPLQHYTLEDIATSHLYREPNKMLEHREVRDRHHNLSLNGGYQDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQESDREELNYWKRRYNENTEMRKTGSEMVSRQHSPGGTDSLSNDSQREFSSRPGTGYVPVEFWKKTEEAVNKVKIQAMSEVQKAVAEAEQKAFEVIATERARMEQTIADVKRQAAEDAFLVINEQEESTENCWNCGRKASETCSGCNIARYCGSFCQHKDWERHHRLCGQNLHGQSPHSQGRPLLPGGRGSSARSADCSVPSPALDKTSATTSRSSTPASVTAIDTNGL", "length": 583, "header": "tr|A0A287AC71-1|I3L802_PIG Computationally mapped isoform of CBFA2/RUNX1 partner transcriptional co-repressor 2 OS=Sus scrofa OX=9823 GN=CBFA2T2 PE=3 SV=2 CANONICAL=I3L802-1" }, "locus": { "chromosome": "17", "start_pos": 37145562, "end_pos": 37109693, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063164.2", "url": "https://www.ensembl.org/id/ENSSSCT00000063164.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041609.2", "url": "https://www.ensembl.org/id/ENSSSCP00000041609.2" } ] } }, { "isoform_ac": "I3L802-1", "url": "https://www.uniprot.org/uniprotkb/I3L802/entry#I3L802-1", "sequence": { "sequence": "MVGVPGAAAFQLGADKRVPAMPGSPVEVKIQSRSSPPTMPPLPPINPGGPRPVSFTPTALSNGINHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKLKRFLTTLQQFGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARAAKQTPSQYLAQHEHLLLNTSIASPADSSELLMEVHGNGKRPSPERREESSFERDTVPPEPPAKRVCTISPAPRHSPALTVPLMNPAGQFHPTPPPLQHYTLEDIATSHLYREPNKMLEHREVRDRHHNLSLNGGYQDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQESDREELNYWKRRYNENTEMRKTGSEMVSRQHSPGGTDSLSNDSQREFSSRPGTGYVPVEFWKKTEEAVNKVKIQAMSEVQKAVAEAEQKAFEVIATERARMEQTIADVKRQAAEDAFLVINEQEESTENCWNCGRKASETCSGCNIARYCGSFCQHKDWERHHRLCGQNLHGQSPHSQGRPLLPGGRGSSARSADCSVPSPALDKTSATTSRSSTPASVTAIDTNGL", "length": 595, "header": "tr|I3L802-1|I3L802_PIG Isoform 1 of CBFA2/RUNX1 partner transcriptional co-repressor 2 OS=Sus scrofa OX=9823 GN=CBFA2T2 PE=3 SV=2 CANONICAL=I3L802-1" }, "locus": { "chromosome": "17", "start_pos": 37145562, "end_pos": 36990247, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027119.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027119.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020160.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020160.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 278, "start_aa": "Thr", "end_pos": 278, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr278", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AC71", "url": "https://www.uniprot.org/uniprotkb/A0A287AC71" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4KEZ2-1", "protein_name": "Nervy, isoform D", "gene_name": "nvy", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MMALDGKAIIKEEITDKDAYDAAAAAAAAVAAGAALAVASAAAVQVPPASSSSAGSASSAAAAATNNTTSAAATAAAISRRLKASSSGGDKSSTSSSSSKDSSHTSSSRSERDRERERERERERDRLCRTPPDSPPDSSRSLAPRSPHSPLQLHQHPQRNASVSPVVNGSSSGGGGVGSSGTSPTPTPGSQHAASLAAAAAAAAAAHVEQARLVSKMRKFLGALVQFSQELGQPEVCERVRALVLSLCSGSISVEEFRLALQEAINLPLRPYVVPLLKNSIALVQREILALARATNQSALQYVTNNEQAVMEFAPHGVASAEFGDIFIQLEAPTSNGSSAVFKRRSSDSMMEHGGHNGLQEWNEYMASGGAGYPPPPSKRLTLHPAHSVVAYGEYGVSSAEGLPSAAAFMQRDERDLRMSEAQARHAAPPQRAGNPQPNPNAAAPGAPGAGGEEEWKNIHTMLNCISAMVDKTKRAITILQQRGIEPQHPNSGQEVTPAAMAELRRQTEEKVAEFKRNAEDAVTQVKRQAVIEIQRAVVAAETRAAEIMTQERLRMEKFFMEMSRHSSGERDLDNKSPSMASAQNGSNLQQQCWNCGRKATETCSGCNMARYCSASCQYRDWDSHHQVCGNTRASELSAKHLHSASNLSLRNAMATRSPPTPNSAAHLQAAAAAAAAAAGAREAVSAPVGGPGAGIAVGTGAGSGGQSGGGGGGGGGGGGGAAAAAVAAATPGALVANGLGSKXRIRMMKPKKKYLC", "length": 757 }, "evidence": [ { "id": "I3L802", "url": "https://omabrowser.org/oma/group/I3L802/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A8V0ZGH2-1", "protein_name": "CBFA2/RUNX1 partner transcriptional co-repressor 2", "gene_name": "CBFA2T2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLNLSLPSHEARRTTAAPLHPPSGPAWISAACPLLEALALQSLAGEKRVPVMPGSPVEVKIQTRSSPPNMPPLPPVNPGGPRPVSFTPTALPNGMNHSPPTLNGAPSPPQRFGNGPASSSSSSLTNQQLPATCGARQLSKLKRFLTTLQQFGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARAAKQTPSQYLAQHEHILLNTTSSPADSSELLIEVNGNGKRHSPDRRDDNSFEREPLPTEPPAKRVCTISPAPRHSPALSIPMLNPGGQFHPTPPPLQHYTLEDIATSHLYRDPGKMLEHREIRDRHGGLGLNGGYQDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQEADREELNYWKRRCSEAEPRKAGGELGTARHSPGSSDSIGSDSLREFSSRSGPGYVTEEIWKKAEEAVNEVKRQAMSEVQKAVAEAEQKAFEMIASERARMEQTIADAKRQATEDAFLVINEQEESTESCWNCGRKASETCSGCNIARYCGSFCQHKDWERHHRICGQSLHGHSKGLALPAGRSAKGMDGVPSPSMEKSSAATSRSSTPASVTAIDTNGL", "length": 617 }, "evidence": [ { "id": "I3L802", "url": "https://omabrowser.org/oma/group/I3L802/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0M6K1-1", "protein_name": "CBFA2/RUNX1 partner transcriptional co-repressor 2", "gene_name": "Cbfa2t2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVGVPGAAAFQLGCEKRVPAMPGSPVEVKIQSRASPPIMPPLPPINPGGPRPVSFTPTALSNGISHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKLKRFLTTLQQFGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARAAKQTPSQYLAQHEHLLLNTSIASPADSSELLMEVHGNGKRPSPESFFYRRDENNFERDTVPPEPTAKRVCTISPAPRHSPALTVPLLSAGGQFHPTPPPLQHYTLEDIATSHLYREPNKMLEHREVRERHHNLSLNGGYQDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQESDREELNYWKRRCNENTELRKTGTELVSRQHSPGSTDSLSNDSQREFTSRPAAGYVPVEFWKKTEEAVNKVKIQAMSEVQKAVAEAEQKAFEVIATERARMEQTIADVKRQAAEDAFLVINEQEESTENCWNCGRKASETCSGCNIARYCGSFCQHKDWERHHRLCGQSLHGHSPHSQSRSLLPGGRGSARSADCSVPSPALDKTSATTSRSSTPASVTAIDANGL", "length": 598 }, "evidence": [ { "id": "I3L802", "url": "https://omabrowser.org/oma/group/I3L802/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MJ18-1", "protein_name": "CBFA2/RUNX1 partner transcriptional co-repressor 2", "gene_name": "CBFA2T2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVGVPGAAAFQLGADKRVPAMPGSPVEVKIQSRSSPPTMPPLPPINPGGPRPVSFTPTALSNGINHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKLKRFLTTLQQFGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARAAKQTPSQYLAQHEHLLLNTSIASPADSSELLMEVHGNGKRPSPERREESSFERDAIAPEPPAKRVCTISPAPRHSPALTVPLMNPGGQFHPTPPPLQHYTLEDIATSHLYREPSKMIEHREVRDRHHNLSLNGGYQDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQESDREELNYWKRRFNENTEMRKTGSELVSRQHSPGSADSLSNDSQREFNSRPGTGYVPVEFWKKTEEAVNKVKIQAMSEVQKAVAEAEQKAFEVIATERARMEQTIADVKRQAAEDAFLVINEQEESTENCWNCGRKASETCSGCNIARYCGSFCQHKDWERHHRLCGQNLHGQSPHSQSRPLLPGGRGSSARSADCSVPSPALDKTSATTSRSSTPASVTAIDTNGL", "length": 595 }, "evidence": [ { "id": "I3L802", "url": "https://omabrowser.org/oma/group/I3L802/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O43439-1", "protein_name": "Protein CBFA2T2", "gene_name": "CBFA2T2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKESGISLKEIQVLARQWKVGPEKRVPAMPGSPVEVKIQSRSSPPTMPPLPPINPGGPRPVSFTPTALSNGINHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKLKRFLTTLQQFGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARAAKQTPSQYLAQHEHLLLNTSIASPADSSELLMEVHGNGKRPSPERREENSFDRDTIAPEPPAKRVCTISPAPRHSPALTVPLMNPGGQFHPTPPPLQHYTLEDIATSHLYREPNKMLEHREVRDRHHSLGLNGGYQDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQESDREELNYWKRRYNENTELRKTGTELVSRQHSPGSADSLSNDSQREFNSRPGTGYVPVEFWKKTEEAVNKVKIQAMSEVQKAVAEAEQKAFEVIATERARMEQTIADVKRQAAEDAFLVINEQEESTENCWNCGRKASETCSGCNIARYCGSFCQHKDWERHHRLCGQNLHGQSPHGQGRPLLPVGRGSSARSADCSVPSPALDKTSATTSRSSTPASVTAIDTNGL", "length": 604 }, "evidence": [ { "id": "I3L802", "url": "https://omabrowser.org/oma/group/I3L802/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O70374-1", "protein_name": "Protein CBFA2T2", "gene_name": "Cbfa2t2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVGVPGAAAFQLGCEKRVPAMPGSPVEVKIQSRSSPPIMPPLPPINPGGPRPVSFTPTALSNGINHSPPTLNGAPSPPQRFSNGPASSTSSALTNQQLPATCGARQLSKLKRFLTTLQQFGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARAAKQTPSQYLAQHEHLLLNTSIASPADSSELLMEVHGNGKRPSPERRDENNFERDTVPPEPPAKRVCTISPAPRHSPALTVPLMNPGGQFHPTPPPLQHYTLEDIATSHLYREPNKMLEHREVRERHHNLSLNGGYQDELVDHRLTEREWADEWKHLDHALNCIMEMVEKTRRSMAVLRRCQESDREELNYWKRRFNENTELRKTGTELVSRQHSPGSTDSLSNDSQREFTSRPATGYVPVEFWKKTEEAVNKVKIQAMSEVQKAVAEAEQKAFEVIATERARMEQTIADVKRQAAEDAFLVINEQEESTENCWNCGRKASETCSGCNIARYCGSFCQHKDWERHHRLCGQSLHGHSPHSQSRPLLPGGRGSARSADCSVPSPALDKTSATTSRSSTPASVTAIDANGL", "length": 594 }, "evidence": [ { "id": "I3L802", "url": "https://omabrowser.org/oma/group/I3L802/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ], "pmid": "" }, { "name": "positive regulation of neuron projection development", "id": "GO:0010976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010976", "evidence": [ { "database": "UniProtKB", "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ], "pmid": "" }, { "name": "negative regulation of Notch signaling pathway", "id": "GO:0045746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045746", "evidence": [ { "database": "UniProtKB", "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ], "pmid": "" }, { "name": "intestinal epithelial cell differentiation", "id": "GO:0060575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060575", "evidence": [ { "database": "UniProtKB", "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "I3L802", "url": "https://www.uniprot.org/uniprotkb/I3L802" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 314, "end_pos": 316, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L802", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L802" }, { "id": "PS50865", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50865" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MYND-type", "eco_id": "ECO_0000259", "start_pos": 498, "end_pos": 534, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L802", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L802" }, { "id": "PS51119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TAFH", "eco_id": "ECO_0000259", "start_pos": 104, "end_pos": 199, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 278 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 204, "end_pos": 206 }, { "start_pos": 314, "end_pos": 316 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PZL5-1", "uniprot_ac": "F6PZL5", "uniprot_id": "F6PZL5_PIG", "mass": { "chemical_mass": 57452.0, "monoisotopic_mass": 57452.0 }, "refseq": { "ac": "XP_005667066", "name": "dentin matrix acidic phosphoprotein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667066" }, "gene_names": [ { "name": "DMP1", "type": "recommended", "evidence": [ { "id": "F6PZL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PZL5" } ] }, { "name": "DMP1", "type": "synonym", "evidence": [ { "id": "XP_005667066", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667066" } ] } ], "protein_names": [ { "name": "Dentin matrix acidic phosphoprotein 1", "type": "synonym", "evidence": [ { "id": "F6PZL5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PZL5/entry#names_and_taxonomy" } ] }, { "name": "dentin matrix acidic phosphoprotein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005667066", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667066" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PZL5", "url": "https://www.uniprot.org/uniprotkb/F6PZL5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DMP1", "url": "https://www.uniprot.org/uniprotkb/F6PZL5", "locus": { "chromosome": "8", "start_pos": 131285330, "end_pos": 131313130, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009220", "url": "https://www.ensembl.org/id/ENSSSCG00000009220" } ] } } ], "crossref": [ { "id": "F6PZL5", "url": "https://alphafold.ebi.ac.uk/entry/F6PZL5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009220", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009220", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "399688", "url": "https://www.ncbi.nlm.nih.gov/gene/399688", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F6PZL5", "url": "https://www.orthodb.org/?gene=F6PZL5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23400", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23400", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23400:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23400:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07263", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07263", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3000178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005667066", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667066", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AFA9", "url": "https://www.uniprot.org/uniprotkb/A0A287AFA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFA9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PZL5", "url": "https://www.uniprot.org/uniprotkb/F6PZL5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PZL5-1", "url": "https://www.uniprot.org/uniprotkb/F6PZL5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTKGRLNCSSAVEVEVTYPAMKTSILLMLLWGLSCALPVARYQNTESKSSEERKGQLAQTPAPPLESSESSEESKLSSEEQAHEDPSDSTESEEHMGLDGHQYSHRPAGGLAVSGGKEGEDKDDDEDESGDDTLGDDDSGPGPEESNSRLRSGEDSADTTQSREDSAPQGEVSAQDTTSESRGLDNEDEVDSRPEGGDSTADSESEEPWVGGGSEGEGSHGDGSEFDDEGMQNDDPGTFRSEGSNSRISTVNLKSKESKGKDEEKASTQDSGESRSVGYASRKFFRKSRISEEGGRGELEDENMMEVKSDSAEAHLSQSWEHRRRESQQESEENESPEEGQHVQDLSSESSQEVDLPSQENSSESQEEGVGEPRGDNPDNITSHSKEDLEESDSSEESLDKPSNSESQSREDPADAESKESLLSSEESPESTEEENSSSQEEGLQAHSPSAETQSQESQSEQDSPSEEDDASDSQDSSKSKESNSTESTSSSEEEGQAKATEIESRKLTVDAYHNRPMGDQDDNDCQDGY", "length": 531, "header": "tr|F6PZL5-1|F6PZL5_PIG Isoform 1 of Dentin matrix acidic phosphoprotein 1 OS=Sus scrofa OX=9823 GN=DMP1 PE=4 SV=1 CANONICAL=F6PZL5-1" }, "isoforms": [ { "isoform_ac": "A0A287AFA9-1", "url": "https://www.uniprot.org/uniprotkb/F6PZL5/entry#A0A287AFA9-1", "sequence": { "sequence": "MTTKGRLNCSSAVEVEVTYPAMKTSILLMLLWGLSCALPVARYQNTESKSSEERKVTLTMSVNPKLQAHEDPSDSTESEEHMGLDGHQYSHRPAGGLAVSGGKEGEDKDDDEDESGDDTLGDDDSGPGPEESNSRLRSGEDSADTTQSREDSAPQGEVSAQDTTSESRGLDNEDEVDSRPEGGDSTADSESEEPWVGGGSEGEGSHGDGSEFDDEGMQNDDPGTFRSEGSNSRISTVNLKSKESKGKDEEKASTQDSGESRSVGYASRKFFRKSRISEEGGRGELEDENMMEVKSDSAEAHLSQSWEHRRRESQQESEENESPEEGQHVQDLSSESSQEVDLPSQENSSESQEEGVGEPRGDNPDNITSHSKEDLEESDSSEESLDKPSNSESQSREDPADAESKESLLSSEESPESTEEENSSSQEEGLQAHSPSAETQSQESQSEQDSPSEEDDASDSQDSSKSKESNSTESTSSSEEEGQAKATEIESRKLTVDAYHNRPMGDQDDNDCQDGY", "length": 516, "header": "tr|A0A287AFA9-1|F6PZL5_PIG Computationally mapped isoform of Dentin matrix acidic phosphoprotein 1 OS=Sus scrofa OX=9823 GN=DMP1 PE=4 SV=3 CANONICAL=F6PZL5-1" }, "locus": { "chromosome": "8", "start_pos": 131312931, "end_pos": 131286267, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057325.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057325.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042708.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042708.3" } ] } }, { "isoform_ac": "F6PZL5-1", "url": "https://www.uniprot.org/uniprotkb/F6PZL5/entry#F6PZL5-1", "sequence": { "sequence": "MTTKGRLNCSSAVEVEVTYPAMKTSILLMLLWGLSCALPVARYQNTESKSSEERKGQLAQTPAPPLESSESSEESKLSSEEQAHEDPSDSTESEEHMGLDGHQYSHRPAGGLAVSGGKEGEDKDDDEDESGDDTLGDDDSGPGPEESNSRLRSGEDSADTTQSREDSAPQGEVSAQDTTSESRGLDNEDEVDSRPEGGDSTADSESEEPWVGGGSEGEGSHGDGSEFDDEGMQNDDPGTFRSEGSNSRISTVNLKSKESKGKDEEKASTQDSGESRSVGYASRKFFRKSRISEEGGRGELEDENMMEVKSDSAEAHLSQSWEHRRRESQQESEENESPEEGQHVQDLSSESSQEVDLPSQENSSESQEEGVGEPRGDNPDNITSHSKEDLEESDSSEESLDKPSNSESQSREDPADAESKESLLSSEESPESTEEENSSSQEEGLQAHSPSAETQSQESQSEQDSPSEEDDASDSQDSSKSKESNSTESTSSSEEEGQAKATEIESRKLTVDAYHNRPMGDQDDNDCQDGY", "length": 531, "header": "tr|F6PZL5-1|F6PZL5_PIG Isoform 1 of Dentin matrix acidic phosphoprotein 1 OS=Sus scrofa OX=9823 GN=DMP1 PE=4 SV=1 CANONICAL=F6PZL5-1" }, "locus": { "chromosome": "8", "start_pos": 131312931, "end_pos": 131286267, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010097.4", "url": "https://www.ensembl.org/id/ENSSSCT00000010097.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009831.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009831.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AFA9", "url": "https://www.uniprot.org/uniprotkb/A0A287AFA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3000178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000178", "resource": "Reactome", "description": "ECM proteoglycans" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "F6PZL5", "url": "https://www.uniprot.org/uniprotkb/F6PZL5" } ], "pmid": "" }, { "name": "ossification", "id": "GO:0001503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001503", "evidence": [ { "database": "UniProtKB", "id": "F6PZL5", "url": "https://www.uniprot.org/uniprotkb/F6PZL5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F6PZL5", "url": "https://www.uniprot.org/uniprotkb/F6PZL5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F6PZL5", "url": "https://www.uniprot.org/uniprotkb/F6PZL5" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F6PZL5", "url": "https://www.uniprot.org/uniprotkb/F6PZL5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "extracellular matrix binding", "id": "GO:0050840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050840", "evidence": [ { "database": "UniProtKB", "id": "F6PZL5", "url": "https://www.uniprot.org/uniprotkb/F6PZL5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 335, "end_pos": 337, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 381, "end_pos": 383, "annotation": "n_glycosylation_sequon" }, { "start_pos": 437, "end_pos": 439, "annotation": "n_glycosylation_sequon" }, { "start_pos": 485, "end_pos": 487, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6PZL5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 531, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6PZL5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6PZL5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 335, "end_pos": 337 }, { "start_pos": 362, "end_pos": 364 }, { "start_pos": 381, "end_pos": 383 }, { "start_pos": 437, "end_pos": 439 }, { "start_pos": 485, "end_pos": 487 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSE8-1", "uniprot_ac": "F1SSE8", "uniprot_id": "F1SSE8_PIG", "mass": { "chemical_mass": 138590.0, "monoisotopic_mass": 138590.0 }, "refseq": {}, "gene_names": [ { "name": "COL15A1", "type": "recommended", "evidence": [ { "id": "F1SSE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSE8" } ] } ], "protein_names": [ { "name": "Collagen alpha-1(XV) chain", "type": "recommended", "evidence": [ { "id": "F1SSE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSE8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Restin potently inhibits angiogenesis.", "evidence": [ { "database": "UniProtKB", "id": "F1SSE8", "url": "https://www.uniprot.org/uniprotkb/F1SSE8#function" }, { "database": "UniProtKB", "id": "ARBA00058706", "url": "https://www.uniprot.org/uniprotkb/ARBA00058706#function" } ] }, { "annotation": "Structural protein that stabilizes microvessels and muscle cells, both in heart and in skeletal muscle.", "evidence": [ { "database": "UniProtKB", "id": "F1SSE8", "url": "https://www.uniprot.org/uniprotkb/F1SSE8#function" }, { "database": "UniProtKB", "id": "ARBA00058695", "url": "https://www.uniprot.org/uniprotkb/ARBA00058695#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSE8", "url": "https://www.uniprot.org/uniprotkb/F1SSE8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COL15A1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8", "locus": { "chromosome": "1", "start_pos": 240829185, "end_pos": 240709086, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005380", "url": "https://www.ensembl.org/id/ENSSSCG00000005380" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005380", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005380", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00110", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00110", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00247", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00247", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001791", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001791", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010515", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010515", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045463", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045463", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1082", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1082", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1109", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1109", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF1112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF1112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF912", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF912", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06482", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06482", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13385", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13385", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1442490", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1650814", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948216", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AFT5", "url": "https://www.uniprot.org/uniprotkb/A0A287AFT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AFT5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AFT5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX97", "url": "https://www.uniprot.org/uniprotkb/A0A287AX97", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AX97-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AX97-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIN8", "url": "https://www.uniprot.org/uniprotkb/A0A287BIN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BIN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BIN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCK3", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FCK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FCK3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLB5", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLB5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNM4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FNM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FNM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSE7", "url": "https://www.uniprot.org/uniprotkb/F1SSE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSE7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSE8", "url": "https://www.uniprot.org/uniprotkb/F1SSE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGRDAQCWRLLLLLSISALLPAVTRTRSATELASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVTVKPSSARGGVLFAITDAFQKVIYLGLRLSAVEDGRQRVILYYTEPGSQVSHEAASFPVPVMTHRWNRFAVVVQGEEASLLVECEEQGHVSFPRSSQALAFEPSAGIFVGNAGATGLERFTGSIQQLTVHSDPRTPEELCEAEESSASGEASGLQETDGVAEMVEAVTYTQAPSEPAEVEPINMPPTPSPLSEDAELSGEPVPEGTQGTTNLSAFPHSSPEQGSGEILNDTLERVHTVDGAPVTDTGSGDGAFLHVIEESLAATAAAVESEVTISTAGEAETESVPTEGPTLSMSTKDPGEEVTLGPDDEEGSAVTAAEEAEVLVSSPGEAEAGSVPTGELTLSMSTQDPGEGGPVHEESLTTAVTAKAPLSTFEEEASRVPTDGLAPLIPTVAPEQVFTSGPGDDDLAAAATEEPLISSGAEELSGVPPEGPPLPLPTVAPERGGAPGEEGEGLPGPPPPTRPAGPTAGAEAEGSSLGWGLDIGSGSGDPVRSEELLRGPPGPPGPPGLPGIPGRPGTDVFVGPPGSPGEDGPAGEPGPPGPEGKPGLDGASGLPGMKGEKGARGPDGSVGEKGDPGSRGLPGPPGKNGQVGTPGVMGPPGPPGPPGPPGPGCAMGQGFEDTEGSGSIRLLHEPRISGPVASVGPKGEKGDQGPKGERGMDGASIVGPPGPRGPPGRIEVLSSSLINITHGFMNLSDIPELVGPPGPEGIPGLPGFPGPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDVPLERLRGKKGEPGEHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVMMPGPPGLPGPPGPPGPPGAVINIKGAVFPIPVRPHCKTPVGTTHPGNSELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENGDRGMKGEKGDTYEGFSVSGPPGLPGSPGLVGQKGETVIGPQGPPGVPGLPGPPGFGRPGSPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPLPADSLPPPALSGNPHQPQLPLTSISSVNYDRPALHLVALNTPSSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADVAVMLGSPLSTGKILDQKAYSCADRLIVLCIENSFMTDARK", "length": 1359, "header": "tr|F1SSE8-1|F1SSE8_PIG Isoform 1 of Collagen alpha-1(XV) chain OS=Sus scrofa OX=9823 GN=COL15A1 PE=1 SV=4 CANONICAL=F1SSE8-1" }, "isoforms": [ { "isoform_ac": "A0A287AFT5-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8/entry#A0A287AFT5-1", "sequence": { "sequence": "RDAQCWRLLLLLSISALLPAVTRTRSATELASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVTVKPSSARGGVLFAITDAFQKVIYLGLRLSAVEDGRQRVILYYTEPGSQVSHEAASFPVPVMTHRWNRFAVVVQGEEASLLVECEEQGHVSFPRSSQALAFEPSAGIFVGNAGATGLERFTGSIQQLTVHSDPRTPEELCEAEESSASGEASGLQETDGVAEMVEAVTYTQAPSEPAEVEPINMPPTPSPLSEDAELSGEPVPEGTQGTTNLSAFPHSSPEQGSGEILNDTLERVHTVDGAPVTDTGSGDGAFLHVIEESPHTEEGLAATAAAVESEVTISTAGEAETESVPTEGPTLSMSTKDPGEEVTLGPDDEEGSAVTAAEEAEVLVSSPGEAEAGSVPTGELTLSMSTQDPGEGGPVHEESLTTAVTAKAPLSTFEEEASRVPTDGLAPLIPTVAPEQVFTSGPGDDDLAAAATEEPLISSGAEELSGVPPEGPPLPLPTVAPERGGAPGEEGEGLPGPPPPTRPAGPTAGAEAEGSSLGWGLDIGSGSGDPVRSEELLRGPPGPPGPPGLPGIPGRPGTDVFVGPPGSPGEDGPAGEPGPPGPEGKPGLDGASGLPGMKGEKGARGPDGSVGEKGDPGSRGLPGPPGKNGQVGTPGVMGPPGPPGPPGPPGPGCAMGQGFEDTEGSGSIRLLHEPRISGPVASVGPKGEKGDQGPKGERGMDGASIVGPPGPRGPPGRIEVLSSSLINITHGFMNLSDIPELVGPPGPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDVPLERLRGKKGEPGEHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVMMPGPPGLPGPPGPPGPPGAVINIKGAVFPIPVRPHCKTPVGTTHPGNSELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENGDRGMKGEKGDTYEGFSVSGPPGLPGSPGLVGQKGETVIGPQGPPGVPGLPGPPGFGRPGSPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPLPADSLPPPALSGNPHQPQLPLTSISSVNYDRPALHLVALNTPSSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADVAVMGLAPR", "length": 1317, "header": "tr|A0A287AFT5-1|F1SSE8_PIG Computationally mapped isoform of Collagen alpha-1(XV) chain OS=Sus scrofa OX=9823 GN=COL15A1 PE=1 SV=3 CANONICAL=F1SSE8-1" }, "locus": { "chromosome": "1", "start_pos": 240828207, "end_pos": 240718522, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000042391.3", "url": "https://www.ensembl.org/id/ENSSSCT00000042391.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000042716.3", "url": "https://www.ensembl.org/id/ENSSSCP00000042716.3" } ] } }, { "isoform_ac": "A0A287AX97-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8/entry#A0A287AX97-1", "sequence": { "sequence": "MASGRDAQCWRLLLLLSISALLPAVTRTRSATELASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVTVKPSSARGGVLFAITDAFQKVIYLGLRLSAVEDGRQRVILYYTEPGSQVSHEAASFPVPVMTHRWNRFAVVVQGEEASLLVECEEQGHVSFPRSSQALAFEPSAGIFVGNAGATGLERFTGSIQQLTVHSDPRTPEELCEAEESSASGEASGLQETDGVAEMVEAVTYTQAPSEPAEVEPINMPPTPSPLSEDAELSGEPVPEGTQGTTNLSAFPHSSPEQGSGEILNDTLERVHTVDGAPVTDTGSGDGAFLHVIEESPHTEEGLAATAAAVESEVTISTAGEAETESVPTEGPTLSMSTKDPGEEVTLGPDDEEGSAVTAAEEAEVLVSSPGEAEAGSVPTGELTLSMSTQDPGEGGPVHEESLTTAVTAKAPLSTFEEEASRVPTDGLAPLIPTVAPEQVFTSGPGDDDLAAAATEEPLISSGAEELSGVPPEGPPLPLPTVAPERGGAPGEEGEGLPGPPPPTRPAGPTAGAEAEGSSLGWGLDIGSGSGDPVRSEELLRGPPGPPGPPGLPGIPGRPGTDVFVGPPGSPGEDGPAGEPGPPGPEGKPGLDGASGLPGMKGEKGARGPDGSVGEKGDPGSRGLPGPPGKNGQPPGPPGPGCAMGQGFEDTEGSGSIRLLHEPRISGPVASVGPKGEKGDQGPKGERGMDGASIVGPPGPRGPPGRIEVLSSSLINITHGFMNLSDIPELVGPPGPEGIPGLPGFPGPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDVPLERLRGKKGEPGEHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVMMPGPPGLPGPPGPPGPPGAVINIKGAVFPIPVRPHCKTPVGTTHPGNSELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENGDRGMKGEKGDTYEGFSVSGPPGLPGSPGLVGQKGETVIGPQGPPGVPGLPGPPGFGRPGSPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPLPADSLPPPALSGNPHQPQLPLTSISSVNYDRPALHLVALNTPSSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADVAVMGLAPR", "length": 1319, "header": "tr|A0A287AX97-1|F1SSE8_PIG Computationally mapped isoform of Collagen alpha-1(XV) chain OS=Sus scrofa OX=9823 GN=COL15A1 PE=1 SV=3 CANONICAL=F1SSE8-1" }, "locus": { "chromosome": "1", "start_pos": 240828207, "end_pos": 240718427, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000037246.3", "url": "https://www.ensembl.org/id/ENSSSCT00000037246.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048772.3", "url": "https://www.ensembl.org/id/ENSSSCP00000048772.3" } ] } }, { "isoform_ac": "A0A287BIN8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8/entry#A0A287BIN8-1", "sequence": { "sequence": "MCDAWPLSLPAELASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVTVKPSSARGGVLFAITDAFQKVIYLGLRLSAVEDGRQRVILYYTEPGSQVSHEAASFPVPVMTHRWNRFAVVVQGEEASLLVECEEQGHVSFPRSSQALAFEPSAGIFVGNAGATGLERFTGSIQQLTVHSDPRTPEELCEAEESSASGEASGLQETDGVAEMVEAVTYTQAPSEPAEVEPINMPPTPSPLSEDAELSGEPVPEGTQGTTNLSAFPHSSPEQGSGEILNDTLERVHTVDGAPVTDTGSGDGAFLHVIEESPHTEEGLAATAAAVESEVTISTAGEAETESVPTEGPTLSMSTKDPGEEVTLGPDDEEGSAVTAAEEAEVLVSSPGEAEAGSVPTGELTLSMSTQDPGEGGPVHEESLTTAVTAKAPLSTFEEEASRVPTDGLAPLIPTVAPEQVFTSGPGDDDLAAAATEEPLISSGAEELSGVPPEGPPLPLPTVAPERGGAPGEEGEGLPGPPPPTRPAGPTAGAEAEGSSLGWGLDIGSGSGDPVRSEELLRGPPGPPGPPGLPGIPGRPGTDVFVGPPGSPGEDGPAGEPGPPGRIISLSSSLQGDPGSRGLPGPPGKNGQVGTPGVMGPPGPPGPPGPPGPGCAMGQGFEDTEGSGSIRLLHEPRISGPVASVGPKGEKGDQGPKGERGMDGASIVGPPGPRGPPGRIEVLSSVSITRSECGCVFPAFAKGDRSLTTTSGPSGLLGMQGGEKGEPGAILTGDVPLERLRGKKGEPGEHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVMMPVSATLGPPWGWGGGDTSAVFPIPVRPHCKTPVSSVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENGDRGMKGEKGDTYEGFSVSGPPGLPGSPGLVVSRDPSTSSSLKSCSFPRSPQSFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPLPADSLPPPALSGNPHQPQLPLTSISSVNYDRPALHLVALNTPSSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADVAVMGLAPR", "length": 1201, "header": "tr|A0A287BIN8-1|F1SSE8_PIG Computationally mapped isoform of Collagen alpha-1(XV) chain OS=Sus scrofa OX=9823 GN=COL15A1 PE=1 SV=1 CANONICAL=F1SSE8-1" }, "locus": { "chromosome": "1", "start_pos": 240828207, "end_pos": 240754822, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053184.2", "url": "https://www.ensembl.org/id/ENSSSCT00000053184.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000056238.2", "url": "https://www.ensembl.org/id/ENSSSCP00000056238.2" } ] } }, { "isoform_ac": "A0A8W4FCK3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8/entry#A0A8W4FCK3-1", "sequence": { "sequence": "MCDAWPLSLPAELASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVTVKPSSARGGVLFAITDAFQKVIYLGLRLSAVEDGRQRVILYYTEPGSQVSHEAASFPVPVMTHRWNRFAVVVQGEEASLLVECEEQGHVSFPRSSQALAFEPSAGIFVGNAGATGLERFTGSIQQLTVHSDPRTPEELCEAEESSASGEASGLQETDGVAEMVEAVTYTQAPSEPAEVEPINMPPTPSPLSEDAELSGEPVPEGTQGTTNLSAFPHSSPEQGSGEILNDTLERVHTVDGAPVTDTGSGDGAFLHVIEESPHTEEGLAATAAAVESEVTISTAGEAETESVPTEGPTLSMSTKDPGEEVTLGPDDEEGSAVTAAEEAEVLVSSPGEAEAGSVPTGELTLSMSTQDPGEGGPVHEESLTTAVTAKAPLSTFEEEASRVPTDGLAPLIPTVAPEQVFTSGPGDDDLAAAATEEPLISSGAEELSGVPPEGPPLPLPTVAPERGGAPGEEGEGLPGPPPPTRPAGPTAGAEAEGSSLGWGLDIGSGSGDPVRSEELLRGPPGPPGPPGLPGIPGRPGTDVFVGPPGSPGEDGPAGEPGPPGRIISLSSSLQGDPGSRGLPGPPGKNGQVGTPGVMGPPGPPGPPGPPGPGCAMGQGFEDTEGSGSIRLLHEPRISGPVASVGPKGEKGDQGPKGERGMDGASIVGPPGPRGPPGRIEVLSSVSITRSECGCVFPAFAKGDRSLTTTSGPSGLLGMQGGEKGEPGAILTGDVPLERLRGKKGEPGEHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVMMPVSATLGPPPHAKLGTGPEASVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENGDRGMKGEKGDTYEGFSVSGPPGLPGSPGLVVSRDPSTSSSLKSCSFPRSPQSFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPLPADSLPPPALSGNPHQPQLPLTSISSVNYDRPALHLVALNTPSSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADVAVMGLAPR", "length": 1187, "header": "tr|A0A8W4FCK3-1|F1SSE8_PIG Computationally mapped isoform of Collagen alpha-1(XV) chain OS=Sus scrofa OX=9823 GN=COL15A1 PE=1 SV=1 CANONICAL=F1SSE8-1" }, "locus": { "chromosome": "1", "start_pos": 240828207, "end_pos": 240754822, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092789.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092789.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076033.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076033.1" } ] } }, { "isoform_ac": "A0A8W4FLB5-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8/entry#A0A8W4FLB5-1", "sequence": { "sequence": "MASGRDAQCWRLLLLLSISALLPAVTRTRSATELASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVTVKPSSARGGVLFAITDAFQKVIYLGLRLSAVEDGRQRVILYYTEPGSQVSHEAASFPVPVMTHRWNRFAVVVQGEEASLLVECEEQGHVSFPRSSQALAFEPSAGIFVGNAGATGLERFTGSIQQLTVHSDPRTPEELCEAEESSASGEASGLQETDGVAEMVEAVTYTQAPSEPAEVEPINMPPTPSPLSEDAELSGEPVPEGTQGTTNLSAFPHSSPEQGSGEILNDTLERVHTVDGAPVTDTGSGDGAFLHVIEESPHTEEGLAATAAAVESEVTISTAGEAETESVPTEGPTLSMSTKDPGEEVTLGPDDEEGSAVTAAEEAEVLVSSPGEAEAGSVPTGELTLSMSTQDPGEGGPVHEESLTTAVTAKAPLSTFEEEASRVPTDGLAPLIPTVAPEQVFTSGPGDDDLAAAATEEPLISSGAEELSGVPPEGPPLPLPTVAPERGGAPGEEGEGLPGPPPPTRPAGPTAGAEAEGSSLGWGLDIGSGSGDPVRSEELLRGPPGPPGPPGLPGIPGRPGTDVFVGPPGSPGEDGPAGEPGPPGPEGKPGLDGASGLPGMKGEKGARGPDGSVGEKGDPGSRGLPGPPGKNGQVGTPGVMGPPGPPGPPGPPGPGCAMGQGFEDTEGSGSIRLLHEPRISGPVASVGPKGEKGDQGPKGERGMDGASIVGPPGPRGPPGRIEVLSSSLINITHGFMNLSDIPELVGPPGPEGIPGLPGFPGPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDVPLERLRGKKGEPGEHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVMMPGPPGLPGPPGPPGPPGAVINIKGAVFPIPVRPHCKTPVGTTHPGNSELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENGDRGMKGEKGDTYEGFSVSGPPGLPGSPGLVGQKGETVIGPQGPPGVPGLPGPPGFGRPGSPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPLPADSLPPPALSGNPHQPQLPLTSISSVNYDRPALHLVALNTPSSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADVAVMGLAPR", "length": 1333, "header": "tr|A0A8W4FLB5-1|F1SSE8_PIG Computationally mapped isoform of Collagen alpha-1(XV) chain OS=Sus scrofa OX=9823 GN=COL15A1 PE=1 SV=1 CANONICAL=F1SSE8-1" }, "locus": { "chromosome": "1", "start_pos": 240828207, "end_pos": 240718427, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095429.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095429.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079698.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079698.1" } ] } }, { "isoform_ac": "A0A8W4FNM4-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8/entry#A0A8W4FNM4-1", "sequence": { "sequence": "MCDAWPLSLPAELASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVTVKPSSARGGVLFAITDAFQKVIYLGLRLSAVEDGRQRVILYYTEPGSQVSHEAASFPVPVMTHRWNRFAVVVQGEEASLLVECEEQGHVSFPRSSQALAFEPSAGIFVGNAGATGLERFTGSIQQLTVHSDPRTPEELCEAEESSASGEASGLQETDGVAEMVEAVTYTQAPSEPAEVEPINMPPTPSPLSEDAELSGEPVPEGTQGTTNLSAFPHSSPEQGSGEILNDTLERVHTVDGAPVTDTGSGDGAFLHVIEESPHTEEGLAATAAAVESEVTISTAGEAETESVPTEGPTLSMSTKDPGEEVTLGPDDEEGSAVTAAEEAEVLVSSPGEAEAGSVPTGELTLSMSTQDPGEGGPVHEESLTTAVTAKAPLSTFEEEASRVPTDGLAPLIPTVAPEQVFTSGPGDDDLAAAATEEPLISSGAEELSGVPPEGPPLPLPTVAPERGGAPGEEGEGLPGPPPPTRPAGPTAGAEAEGSSLGWGLDIGSGSGDPVRSEELLRGPPGPPGPPGLPGIPGRPGTDVFVGPPGSPGEDGPAGEPGPPGRIISLSSSLQGDPGSRGLPGPPGKNGQVGTPGVMGPPGPPGPPGPPGPGCAMGQGFEDTEGSGSIRLLHEPRISGPVASVGPKGEKGDQGPKGERGMDGASIVGPPGPRGPPGRIEVLSSSLINITHGFMNLSDIPELVGPPGPEGIPGLPGFPGPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDVPLERLRGKKGEPGEHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVMMPVSATLGPPWGWGGGDTSAVFPIPVRPHCKTPVSSVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENGDRGMKGEKGDTYEGFSVSGPPGLPGSPGLVVSRDPSTSSSLKSCSFPRSPQSFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPLPADSLPPPALSGNPHQPQLPLTSISSVNYDRPALHLVALNTPSSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADVAVMGLAPR", "length": 1220, "header": "tr|A0A8W4FNM4-1|F1SSE8_PIG Computationally mapped isoform of Collagen alpha-1(XV) chain OS=Sus scrofa OX=9823 GN=COL15A1 PE=1 SV=1 CANONICAL=F1SSE8-1" }, "locus": { "chromosome": "1", "start_pos": 240828207, "end_pos": 240754822, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095865.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095865.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080514.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080514.1" } ] } }, { "isoform_ac": "F1SSE7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8/entry#F1SSE7-1", "sequence": { "sequence": "MMPGPPGLPGPPGPPGPPGAVINIKGAVFPIPVRPHCKTPVGTTHPGNSELITFHAVALPGPPGPPGQPGLPGSRNLVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPLPADSLPPPALSGNPHQPQLPLTSISSVNYDRPALHLVALNTPSSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADVAVMGLAPR", "length": 298, "header": "tr|F1SSE7-1|F1SSE8_PIG Computationally mapped isoform of Collagen alpha-1(XV) chain OS=Sus scrofa OX=9823 GN=COL15A1 PE=1 SV=4 CANONICAL=F1SSE8-1" }, "locus": { "chromosome": "1", "start_pos": 240828207, "end_pos": 240806434, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005921.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005921.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005774.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005774.4" } ] } }, { "isoform_ac": "F1SSE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSE8/entry#F1SSE8-1", "sequence": { "sequence": "MASGRDAQCWRLLLLLSISALLPAVTRTRSATELASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVTVKPSSARGGVLFAITDAFQKVIYLGLRLSAVEDGRQRVILYYTEPGSQVSHEAASFPVPVMTHRWNRFAVVVQGEEASLLVECEEQGHVSFPRSSQALAFEPSAGIFVGNAGATGLERFTGSIQQLTVHSDPRTPEELCEAEESSASGEASGLQETDGVAEMVEAVTYTQAPSEPAEVEPINMPPTPSPLSEDAELSGEPVPEGTQGTTNLSAFPHSSPEQGSGEILNDTLERVHTVDGAPVTDTGSGDGAFLHVIEESLAATAAAVESEVTISTAGEAETESVPTEGPTLSMSTKDPGEEVTLGPDDEEGSAVTAAEEAEVLVSSPGEAEAGSVPTGELTLSMSTQDPGEGGPVHEESLTTAVTAKAPLSTFEEEASRVPTDGLAPLIPTVAPEQVFTSGPGDDDLAAAATEEPLISSGAEELSGVPPEGPPLPLPTVAPERGGAPGEEGEGLPGPPPPTRPAGPTAGAEAEGSSLGWGLDIGSGSGDPVRSEELLRGPPGPPGPPGLPGIPGRPGTDVFVGPPGSPGEDGPAGEPGPPGPEGKPGLDGASGLPGMKGEKGARGPDGSVGEKGDPGSRGLPGPPGKNGQVGTPGVMGPPGPPGPPGPPGPGCAMGQGFEDTEGSGSIRLLHEPRISGPVASVGPKGEKGDQGPKGERGMDGASIVGPPGPRGPPGRIEVLSSSLINITHGFMNLSDIPELVGPPGPEGIPGLPGFPGPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDVPLERLRGKKGEPGEHGAPGPMGPKGPPGHKGEFGLPGRPGRPGLNGLKGAKGDRGVMMPGPPGLPGPPGPPGPPGAVINIKGAVFPIPVRPHCKTPVGTTHPGNSELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPAYLRHFLNSLKGENGDRGMKGEKGDTYEGFSVSGPPGLPGSPGLVGQKGETVIGPQGPPGVPGLPGPPGFGRPGSPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLVTAFSNMDDMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPLPADSLPPPALSGNPHQPQLPLTSISSVNYDRPALHLVALNTPSSGDLRADFQCFQQARAAGLLSTYRAFLSSHLQDLSTIVRKAERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADVAVMLGSPLSTGKILDQKAYSCADRLIVLCIENSFMTDARK", "length": 1359, "header": "tr|F1SSE8-1|F1SSE8_PIG Isoform 1 of Collagen alpha-1(XV) chain OS=Sus scrofa OX=9823 GN=COL15A1 PE=1 SV=4 CANONICAL=F1SSE8-1" }, "locus": { "chromosome": "1", "start_pos": 240828305, "end_pos": 240718427, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005920.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005920.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005773.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005773.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 281, "start_aa": "Thr", "end_pos": 281, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr281", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 410, "start_aa": "Thr", "end_pos": 410, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr410", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 562, "start_aa": "Thr", "end_pos": 562, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr562", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSE7", "url": "https://www.uniprot.org/uniprotkb/F1SSE7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1442490", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1442490", "resource": "Reactome", "description": "Collagen degradation" }, { "id": "R-SSC-1650814", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1650814", "resource": "Reactome", "description": "Collagen biosynthesis and modifying enzymes" }, { "id": "R-SSC-8948216", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948216", "resource": "Reactome", "description": "Collagen chain trimerization" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SSE8", "url": "https://www.uniprot.org/uniprotkb/F1SSE8" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "F1SSE8", "url": "https://www.uniprot.org/uniprotkb/F1SSE8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SSE8", "url": "https://www.uniprot.org/uniprotkb/F1SSE8" } ], "pmid": "" }, { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "F1SSE8", "url": "https://www.uniprot.org/uniprotkb/F1SSE8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "extracellular matrix structural constituent conferring tensile strength", "id": "GO:0030020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030020", "evidence": [ { "database": "UniProtKB", "id": "F1SSE8", "url": "https://www.uniprot.org/uniprotkb/F1SSE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" }, { "start_pos": 782, "end_pos": 784, "annotation": "n_glycosylation_sequon" }, { "start_pos": 789, "end_pos": 791, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSE8" }, { "id": "SM00282", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00282" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin G", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 226, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSE8" }, { "id": "SM00210", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00210" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thrombospondin-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 227, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 281, 410, 562 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 305, "end_pos": 307 }, { "start_pos": 323, "end_pos": 325 }, { "start_pos": 782, "end_pos": 784 }, { "start_pos": 789, "end_pos": 791 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L7Y4-1", "uniprot_ac": "I3L7Y4", "uniprot_id": "I3L7Y4_PIG", "mass": { "chemical_mass": 349622.0, "monoisotopic_mass": 349622.0 }, "refseq": {}, "gene_names": [ { "name": "EP400", "type": "recommended", "evidence": [ { "id": "I3L7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ] } ], "protein_names": [ { "name": "E1A binding protein p400", "type": "synonym", "evidence": [ { "id": "I3L7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EP400", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4", "locus": { "chromosome": "14", "start_pos": 23289244, "end_pos": 23396656, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028018", "url": "https://www.ensembl.org/id/ENSSSCG00000028018" } ] } } ], "crossref": [ { "id": "ENSSSCG00000028018", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028018", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00167", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00167", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18793", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18793", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038718", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038718", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049730", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049730", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46459", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46459", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46459:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46459:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00176", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00176", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07529", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07529", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15790", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15790", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2559584", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559584", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559586", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559586", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AHU7", "url": "https://www.uniprot.org/uniprotkb/A0A287AHU7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AHU7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AHU7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7Y4-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPX4", "url": "https://www.uniprot.org/uniprotkb/I3LPX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LPX4-1", "url": "https://www.uniprot.org/uniprotkb/I3LPX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFLYPRPFPPLLLRSQPFFPRLQDPAQHTALPTRPAHFPAPRPAQGVRKHQSPQPTLPPRLAGPTHRGSELSSRAYSRSSKGAPEGTDGHTQPAPSPLELPSRNLHSPQTPRLARRRPIGPPRRLASLAFLAVSTPPSHPTSCRAPKRSCGRAFLPARRSRRAAASSAQVPDVSSGTAPPGPRPQPQFDAEEQAGPGRTLSWIKRRAIMHHGSGPQNVQHQLQRSRAFASSEGEEQPAHPNPPQSPATPFAPSASPSAPQSPGYPVQQLMSRSPVAGQNVNIALQNVGPVVGGNPQITLAPLPLPSPTSPGFQFSTQQRRFEHGSPSYIQVTSPLSQQVQTQSPTQPSPGPGPGLQSVRAGAPGPGLGLCSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEGSGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVHHLGPQSPAGGAGLQPLSSPGHITTTSLPPQISSIIQGQLIQQQQVLQGPPLTRPLLPGVGVGVGGASAFGMTSPPPPTSPSRTAVPPGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEALKEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDLEEEEEEEEEEEKSEVINDEQQALAGTLVAGAGSTVETDPFKRQQAGPPAEQSKRPRLEVGHQGVVFQHPGVNTGVPLQQLMPTVQGGMPPAPQAAQLAGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPGRLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKTQQPNAPVPAPPPSQLPAPPPQPTPPALHVPMPGKAQMQAPPLSAQPQTVASSRPPVDPAQPCPRPPPSSSTSSIAPASGSGPGPSPARASPVNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLAEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVARHHEEKKLREERGKKEEQNRLRRIAASTAREIEYFWSNIEQVVEIKLQVELEEKRKKALHLQKVSRKGTSFFLQPFLAELPLIDLMKLYEGAFLPNFQWPQPKPDSDETSEEEDMEDCSGDRESRKDVVLIDSLFIMDQFKAAERVNVGKPHTKDIAEVTAVAEAVLPKGSARISTGVKLTAPALLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVIVRSCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWSEPNSFNICITSYKQFFRGHASFPRARWKCLVIDEMQRVKGMTERHWEAVFALQSQQRLLLIDAPLHNTFLELWTMVHFLIPGISRPYLHFPLKAPSEENQDYYHKVVIRLHRVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGTQEALKSGHFVDVLRPLQYRSASLILKALDRDFWKETDLSIFDLIGLENKMTHHEAELLCKKKVTRKLFEELFTAPPLPSSGRPVPVRLKPSRLFQPVQYGQKPEGRTVAFPSAHPPRMAASATATAAPQGHVRGRPPIATFSANPDAKAAAAPFQTSQASSGAPRHQPASTFSTAPSPAHPAKLRAPGPPPPQPQAPSHPAGQSALPQGLVLTSQAQARLPSGEVVKIAQLASLAGPPSRVAQPETPVTLQFQGNKFTLSHSQLRQLTAGQPLQLQGSVLQIVSAPGQSYLRPPGPVVMQTVSQAGALNALGSKPPAGGPGPTPVTPPVAVPGRVAVSPLAAGEPGVASKPASPVAGPTQEEKTRLMKERLDQIYFVNERRCSRAPIYGRDLLGVCSLMGREHMPWLRASESSTGKVTGPVSQFISPSKSQRDLILTLTQRQESLQDVINRVVCVIPPVVAAPPRLWVARPPSLYSHKMRLFRHGLQEHTAPYAQQLQQMTALRSLQFPELRLVQFDSGKLEALAVLLQKLRSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRTTGVSLVEADAVVFYDNDLNPVMDAKAQEWCDRIGRRRDVHIYRLVSGNSIEEKLLKNGTKDLIREVAAQGNDYSMAFLTQRTIQELFEVYSPMDDAGFPVKAEEFVVLSQEPSVTETIAPKIARPFIEALKSIEYLEEDAQKPFEEAVPEVSDSDSSRWNEEPSQLEELADFMGQLTPIEKYALNYLELFHTSIDQEKERNSEGAVLSAVQEWEARNARMLREQEARELREQEQEQLLTYTREDAYNAEYVCEGAEGQTEVMPLWTPPTPPQDDNDIYIDSVMCLMYETTPIPESKLPPVYVRKERRRHKTDPSAAGRKKKQRHGEAVVPPRSLFDRATPGMLKIRREGKEQKKNILLKQQTQFAKPLPTFAKPTAESGPDNPEWLISEDWALLQAVKQLLELPLNLTIVSPAHTPNWDLVSDVVNSCSRIYRSSKQCRNRYENVLIPREEGKSKNNRPLRTGQMYAQDENATHTQLYTSHFDLMKMTAGKRSPPIKPLLGMNPFQKNPKHASVLAESGINYDKPLPPIQVASLRAERIAKEKKALADQQKAQQPPVAQPPPPPPQPQPPPPQQPPPPLPQPQATSSQQPTGPPAVQPQAQAQPPAQPTQPPPKAPPAITTVGSAAVLQAGAIKTSVTGTSMPTGTVSGNVIVNTIAGVPAATFQSINKRLASPVAPGALTTSGGSAPAQVVHTQPRAVGSPATAASDLVSLAPTQGVRAVTSVTASAVVTTSLTPVQTPTRSLVTQVSQATGVQLPGKTITPAHFQLLRQQQQQQQQQQQQQQQQQQAASQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQLPQQAPPPQAPPGPPQPTAQVQVQPPQPTQQQSPQLTTVTAPRPGALLTGTTVANLQVARLTRVPTSQLQAQGQMQAQAPQPAQVALAKPPVVSVPAAVVSSPGVTTLPMNVAGISVAIGQPQKTAGQTVVAQPVHVQQLLKLKQQAVQQQKAIQPQAAPGPAAVQQKITAQQIAAQGQAQKVTYATQPALKTQFLTTPISQAQKLAGTQQVQTQIQVAKLPQVVQQQTPVASIQQVASASQQASPQTVTLTQATAAGQQVQMIPAVTATAQVVQQKLMQQQVVTTAAAQLQTPGVPNPAQAPASADSPNQQPKLQMRVPAVRLKTPTKPPCP", "length": 3210, "header": "tr|I3L7Y4-1|I3L7Y4_PIG Isoform 1 of E1A binding protein p400 OS=Sus scrofa OX=9823 GN=EP400 PE=1 SV=3 CANONICAL=I3L7Y4-1" }, "isoforms": [ { "isoform_ac": "A0A287AHU7-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4/entry#A0A287AHU7-1", "sequence": { "sequence": "MLFLYPRPFPPLLLRSQPFFPRLQDPAQHTALPTRPAHFPAPRPAQGVRKHQSPQPTLPPRLAGPTHRGSELSSRAYSRSSKGAPEGTDGHTQPAPSPLELPSRNLHSPQTPRLARRRPIGPPRRLASLAFLAVSTPPSHPTSCRAPKRSCGRAFLPARRSRRAAASSAQVPDVSSGTAPPGPRPQPQFDAEEQAGPGRTLSWIKRRAIMHHGSGPQNVQHQLQRSRAFASSEGEEQPAHPNPPQSPATPFAPSASPSAPQSPGYPVQQLMSRSPVAGQNVNIALQNVGPVVGGNPQITLAPLPLPSPTSPGFQFSTQQRRFEHGSPSYIQVTSPLSQQVQTQSPTQPSPGPGPGLQSVRAGAPGPGLGLCSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEGSGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVHHLGPQSPAGGAGLQPLSSPGHITTTSLPPQISSIIQGQLIQQQQVLQGPPLTRPLLPGVGVGVGGASAFGMTSPPPPTSPSRTAVPPGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEALKEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDLEEEEEEEEEEEKSEVINDEVRMCGVLSEGVYDSLEPQSQCRGGLSSFAGGMPPAPQAAQLAGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPGRLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKTQQPNAPVPAPPPSQLPAPPPQPTPPALHVPMPGKAQMQAPPLSAQPQTVASSRPPVDPAQPCPRPPPSSSTSSIAPASGSGPGPSPARASPVNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLAEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVARHHEEKKLREERGKKEEQNRLRRIAASTAREIEYFWSNIEQVVEIKLQVELEEKRKKALHLQKVSRKGTSFFLQPFLAELPLIDLMKLYEGAFLPNFQWPQPKPDSDETSEEEDMEDCSGDRESRKDVVLIDSLFIMDQFKAAERVNVGKPHTKDIAEVTAVAEAVLPKGSARISTGVKLTAPALLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVIVRSCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWSEPNSFNICITSYKQFFRGHASFPRARWKCLVIDEMQRVKGMTERHWEAVFALQSQQRLLLIDAPLHNTFLELWTMVHFLIPGISRPYLHFPLKAPSEENQDYYHKVVIRLHRVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGTQEALKSGHFVDVLRPLQYRSASLILKALDRDFWKETDLSIFDLIGLENKMTHHEAELLCKKKVTRKLFEELFTAPPLPSSGRPVPVRLKPSRLFQPVQYGQKPEGRTVAFPSAHPPRMAASATATAAPQGHVRGRPPIATFSANPDAKAAAAPFQTSQASSGAPRHQPASTFSTAPSPAHPAKLRAPGPPPPQPQAPSHPAGQSALPQGLVLTSQAQARLPSGEVVKIAQLASLAGPPSRVAQPETPVTLQFQGNKFTLSHSQLRQLTAGQPLQLQGSVLQIVSAPGQSYLRPPGPVVMQTVSQAGALNALGSKPPAGGPGPTPVTPPVAVPGRVAVSPLAAGEPGVASKPASPVAGPTQEEKTRLMKERLDQIYFVNERRCSRAPIYGRDLLGVCSLMGREHMPWLRASESSTGKVTGPVSQFISPSKSQRDLILTLTQRQESLQDVINRVVCVIPPVVAAPPRLWVARPPSLYSHKMRLFRHGLQEHTAPYAQQLQQMTALRSLQFPELRLVQFDSGKLEALAVLLQKLRSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRTTGVSLVEADAVVFYDNDLNPVMDAKAQEWCDRIGRRRDVHIYRLVSGNSIEEKLLKNGTKDLIREVAAQGNDYSMAFLTQRTIQELFEVYSPMDDAGFPVKAEEFVVLSQEPSVTETIAPKIARPFIEALKSIEYLEEDAQKPFEEAVPEVSDSDSSRWNEEPSQLEELADFMGQLTPIEKYALNYLELFHTSIDQEKERNSEGAVLSAVQEWEARNARMLREQEARELREQEQEQLLTYTREDAYNAEYVCEGAEGQTEVMPLWTPPTPPQDDNDIYIDSVMCLMYETTPIPESKLPPVYVRKERRRHKTDPSAAGRKKKQRHGEAVVPPRSLFDRATPGMLKIRREGKEQKKNILLKQQTQFAKPLPTFAKPTAESGPDNPEWLISEDWALLQAVKQLLELPLNLTIVSPAHTPNWDLVSDVVNSCSRIYRSSKQCRNRYENVLIPREEGKSKNNRPLRTGQMYAQDENATHTQLYTSHFDLMKMTAGKRSPPIKPLLGMNPFQKNPKHASVLAESGINYDKPLPPIQVASLRAERIAKEKKALADQQKAQQPPVAQPPPPPPQPQPPPPQQPPPPLPQPQATSSQQPTGPPAVQPQAQAQPPAQPTQPPPKAPPAITTVGSAAVLQAGAIKTSVTGTSMPTGTVSGNVIVNTIAGVPAATFQSINKRLASPVAPGALTTSGGSAPAQVVHTQPRAVGSPATAASDLVSLAPTQGVRAVTSVTASAVVTTSLTPVQTPTRSLVTQVSQATGVQLPGKTITPAHFQLLRQQQQQQQQQQQQQQQQQQAASQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQLPQQAPPPQAPPGPPQPTAQVQVQPPQPTQQQSPQLTTVTAPRPGALLTGTTVANLQVARLTRVPTSQLQAQGQMQAQAPQPAQVALAKPPVVSVPAAVVSSPGVTTLPMNVAGISVAIGQPQKTAGQTVVAQPVHVQQLLKLKQQAVQQQKAIQPQAAPGPAAVQQKITAQQIAAQGQAQKVTYATQPALKTQFLTTPISQAQKLAGTQQVQTQIQVAKLPQVVQQQTPVASIQQVASASQQASPQTVTLTQATAAGQQVQMIPAVTATAQVVQQKLMQQQVVTTAAAQLQTPGVPNPAQAPASADSPNQQPKLQMRVPAVRLKTPTKPPCP", "length": 3173, "header": "tr|A0A287AHU7-1|I3L7Y4_PIG Computationally mapped isoform of E1A binding protein p400 OS=Sus scrofa OX=9823 GN=EP400 PE=1 SV=2 CANONICAL=I3L7Y4-1" }, "locus": { "chromosome": "14", "start_pos": 23396457, "end_pos": 23289586, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000044188.3", "url": "https://www.ensembl.org/id/ENSSSCT00000044188.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043443.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043443.2" } ] } }, { "isoform_ac": "I3L7Y4-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4/entry#I3L7Y4-1", "sequence": { "sequence": "MLFLYPRPFPPLLLRSQPFFPRLQDPAQHTALPTRPAHFPAPRPAQGVRKHQSPQPTLPPRLAGPTHRGSELSSRAYSRSSKGAPEGTDGHTQPAPSPLELPSRNLHSPQTPRLARRRPIGPPRRLASLAFLAVSTPPSHPTSCRAPKRSCGRAFLPARRSRRAAASSAQVPDVSSGTAPPGPRPQPQFDAEEQAGPGRTLSWIKRRAIMHHGSGPQNVQHQLQRSRAFASSEGEEQPAHPNPPQSPATPFAPSASPSAPQSPGYPVQQLMSRSPVAGQNVNIALQNVGPVVGGNPQITLAPLPLPSPTSPGFQFSTQQRRFEHGSPSYIQVTSPLSQQVQTQSPTQPSPGPGPGLQSVRAGAPGPGLGLCSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEGSGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVHHLGPQSPAGGAGLQPLSSPGHITTTSLPPQISSIIQGQLIQQQQVLQGPPLTRPLLPGVGVGVGGASAFGMTSPPPPTSPSRTAVPPGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEALKEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDLEEEEEEEEEEEKSEVINDEQQALAGTLVAGAGSTVETDPFKRQQAGPPAEQSKRPRLEVGHQGVVFQHPGVNTGVPLQQLMPTVQGGMPPAPQAAQLAGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPGRLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKTQQPNAPVPAPPPSQLPAPPPQPTPPALHVPMPGKAQMQAPPLSAQPQTVASSRPPVDPAQPCPRPPPSSSTSSIAPASGSGPGPSPARASPVNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLAEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVARHHEEKKLREERGKKEEQNRLRRIAASTAREIEYFWSNIEQVVEIKLQVELEEKRKKALHLQKVSRKGTSFFLQPFLAELPLIDLMKLYEGAFLPNFQWPQPKPDSDETSEEEDMEDCSGDRESRKDVVLIDSLFIMDQFKAAERVNVGKPHTKDIAEVTAVAEAVLPKGSARISTGVKLTAPALLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKTVQIIAFFAHLACNEGNWGPHLVIVRSCNILKWELELKRWCPGLKTLLYVGSHRELKAKRQEWSEPNSFNICITSYKQFFRGHASFPRARWKCLVIDEMQRVKGMTERHWEAVFALQSQQRLLLIDAPLHNTFLELWTMVHFLIPGISRPYLHFPLKAPSEENQDYYHKVVIRLHRVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGTQEALKSGHFVDVLRPLQYRSASLILKALDRDFWKETDLSIFDLIGLENKMTHHEAELLCKKKVTRKLFEELFTAPPLPSSGRPVPVRLKPSRLFQPVQYGQKPEGRTVAFPSAHPPRMAASATATAAPQGHVRGRPPIATFSANPDAKAAAAPFQTSQASSGAPRHQPASTFSTAPSPAHPAKLRAPGPPPPQPQAPSHPAGQSALPQGLVLTSQAQARLPSGEVVKIAQLASLAGPPSRVAQPETPVTLQFQGNKFTLSHSQLRQLTAGQPLQLQGSVLQIVSAPGQSYLRPPGPVVMQTVSQAGALNALGSKPPAGGPGPTPVTPPVAVPGRVAVSPLAAGEPGVASKPASPVAGPTQEEKTRLMKERLDQIYFVNERRCSRAPIYGRDLLGVCSLMGREHMPWLRASESSTGKVTGPVSQFISPSKSQRDLILTLTQRQESLQDVINRVVCVIPPVVAAPPRLWVARPPSLYSHKMRLFRHGLQEHTAPYAQQLQQMTALRSLQFPELRLVQFDSGKLEALAVLLQKLRSEGRRVLILSQMVLMLDILEMFLNFHYLTYIRIDENANSEQRQELMRSFNRDRRIFCALLSTHSRTTGVSLVEADAVVFYDNDLNPVMDAKAQEWCDRIGRRRDVHIYRLVSGNSIEEKLLKNGTKDLIREVAAQGNDYSMAFLTQRTIQELFEVYSPMDDAGFPVKAEEFVVLSQEPSVTETIAPKIARPFIEALKSIEYLEEDAQKPFEEAVPEVSDSDSSRWNEEPSQLEELADFMGQLTPIEKYALNYLELFHTSIDQEKERNSEGAVLSAVQEWEARNARMLREQEARELREQEQEQLLTYTREDAYNAEYVCEGAEGQTEVMPLWTPPTPPQDDNDIYIDSVMCLMYETTPIPESKLPPVYVRKERRRHKTDPSAAGRKKKQRHGEAVVPPRSLFDRATPGMLKIRREGKEQKKNILLKQQTQFAKPLPTFAKPTAESGPDNPEWLISEDWALLQAVKQLLELPLNLTIVSPAHTPNWDLVSDVVNSCSRIYRSSKQCRNRYENVLIPREEGKSKNNRPLRTGQMYAQDENATHTQLYTSHFDLMKMTAGKRSPPIKPLLGMNPFQKNPKHASVLAESGINYDKPLPPIQVASLRAERIAKEKKALADQQKAQQPPVAQPPPPPPQPQPPPPQQPPPPLPQPQATSSQQPTGPPAVQPQAQAQPPAQPTQPPPKAPPAITTVGSAAVLQAGAIKTSVTGTSMPTGTVSGNVIVNTIAGVPAATFQSINKRLASPVAPGALTTSGGSAPAQVVHTQPRAVGSPATAASDLVSLAPTQGVRAVTSVTASAVVTTSLTPVQTPTRSLVTQVSQATGVQLPGKTITPAHFQLLRQQQQQQQQQQQQQQQQQQAASQVQVPQIQGQAQSPAQIKAVGKLTPEHLIKMQKQKLQLPQQAPPPQAPPGPPQPTAQVQVQPPQPTQQQSPQLTTVTAPRPGALLTGTTVANLQVARLTRVPTSQLQAQGQMQAQAPQPAQVALAKPPVVSVPAAVVSSPGVTTLPMNVAGISVAIGQPQKTAGQTVVAQPVHVQQLLKLKQQAVQQQKAIQPQAAPGPAAVQQKITAQQIAAQGQAQKVTYATQPALKTQFLTTPISQAQKLAGTQQVQTQIQVAKLPQVVQQQTPVASIQQVASASQQASPQTVTLTQATAAGQQVQMIPAVTATAQVVQQKLMQQQVVTTAAAQLQTPGVPNPAQAPASADSPNQQPKLQMRVPAVRLKTPTKPPCP", "length": 3210, "header": "tr|I3L7Y4-1|I3L7Y4_PIG Isoform 1 of E1A binding protein p400 OS=Sus scrofa OX=9823 GN=EP400 PE=1 SV=3 CANONICAL=I3L7Y4-1" }, "locus": { "chromosome": "14", "start_pos": 23396457, "end_pos": 23289586, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027939.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027939.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020142.3", "url": "https://www.ensembl.org/id/ENSSSCP00000020142.3" } ] } }, { "isoform_ac": "I3LPX4-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4/entry#I3LPX4-1", "sequence": { "sequence": "MHHGSGPQNVQHQLQRSRAFASSEGEEQPAHPNPPQSPATPFAPSASPSAPQSPGYPVQQLMSRSPVAGQNVNIALQNVGPVVGGNPQITLAPLPLPSPTSPGFQFSTQQRRFEHGSPSYIQVTSPLSQQVQTQSPTQPSPGPGPGLQSVRAGAPGPGLGLCSSSPTGGFVDASVLVRQISLSPSSGSHFVFQEGSGLAQMAQGGQVQLQHAGAPIAVRERRLSQPHAQSGGTVHHLGPQSPAGGAGLQPLSSPGHITTTSLPPQISSIIQGQLIQQQQVLQGPPLTRPLLPGVGVGVGGASAFGMTSPPPPTSPSRTAVPPGLSSLPLTSAGSAGVRKAPRKLEEIPPASQELAQMRKQCLDYHYREMEALKEAFKEYLIELFFLQHLQGNMMDFLAFKKKHYAPLQAYLRQNDLDLEEEEEEEEEEEKSEVINDEVKVVTGKDGQTGTPVAIATQLPANVSAAFSSQQQPFQQALAGTLVAGAGSTVETDPFKRQQAGPPAGMSEQSKRPRLEVGHQGVVFQHPGVNTGVPLQQLMPTVQGGMPPAPQAAQLAGQKQSQQQYDPSTGPPVQNAASLHTPPPQLPGRLPAAGLPTVPLPPALQFSQQPQMVEPQPQLQIPVKTQQPNAPVPAPPPSQLPAPPPQPTPPALHVPMPGKAQMQAPPLSAQPQTVASSRPPVDPAQPCPRPPPSSSTSSIAPASGSGPGPSPARASPVNRPSLATTKSLSPVTSRSPGAAVSALPKPQSPAQNTAPPQDSSQDKLAEQIALENQIHQRIADLRKEGLWSLRRLPKLQEAPRPKSHWDYLLEEMQWMATDFAQERRWKVAAAKKLVRTVARHHEEKKLREERGKKEEQNRLRRIAASTAREIEYFWSNIEQVVEIKLQVELEEKRKKALHLQKVSRKGKELRSKGLDVLSENFLDSGTSGRKRRASTSLTDDEVEDEEETIEEEEANEGAVDHQTELSNLAKEGKLKLLR", "length": 977, "header": "tr|I3LPX4-1|I3L7Y4_PIG Computationally mapped isoform of E1A binding protein p400 OS=Sus scrofa OX=9823 GN=EP400 PE=1 SV=3 CANONICAL=I3L7Y4-1" }, "locus": { "chromosome": "14", "start_pos": 23384203, "end_pos": 23358111, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024610.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024610.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026151.3", "url": "https://www.ensembl.org/id/ENSSSCP00000026151.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1774, "start_aa": "Thr", "end_pos": 1774, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1774", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1777, "start_aa": "Thr", "end_pos": 1777, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1777", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2318, "start_aa": "Thr", "end_pos": 2318, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2318", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2895, "start_aa": "Thr", "end_pos": 2895, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2895", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2906, "start_aa": "Thr", "end_pos": 2906, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2906", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 522, "start_aa": "Thr", "end_pos": 522, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr522", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 817, "start_aa": "Thr", "end_pos": 817, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr817", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LPX4", "url": "https://www.uniprot.org/uniprotkb/I3LPX4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2559584", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559584", "resource": "Reactome", "description": "Formation of Senescence-Associated Heterochromatin Foci (SAHF)" }, { "id": "R-SSC-2559586", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559586", "resource": "Reactome", "description": "DNA Damage/Telomere Stress Induced Senescence" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "helicase activity", "id": "GO:0004386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004386", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "NuA4 histone acetyltransferase complex", "id": "GO:0035267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035267", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "Swr1 complex", "id": "GO:0000812", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000812", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" }, { "name": "positive regulation of double-strand break repair via homologous recombination", "id": "GO:1905168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905168", "evidence": [ { "database": "UniProtKB", "id": "I3L7Y4", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 2106, "end_pos": 2108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2455, "end_pos": 2457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2520, "end_pos": 2522, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" }, { "id": "PS51204", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51204" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HSA", "eco_id": "ECO_0000259", "start_pos": 961, "end_pos": 1033, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 1209, "end_pos": 1374, "start_aa": "Ala", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 1971, "end_pos": 2123, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L7Y4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7Y4" }, { "id": "PS50090", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50090" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myb-like", "eco_id": "ECO_0000259", "start_pos": 2434, "end_pos": 2495, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 522, 817, 1774, 1777, 2318, 2895, 2906 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 2106, "end_pos": 2108 }, { "start_pos": 2455, "end_pos": 2457 }, { "start_pos": 2520, "end_pos": 2522 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 7 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 7 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 7 }, { "field": "exact_o_linked_sites", "count": 7 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 7 }, { "field": "total_sites", "count": 7 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 7 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 7 }, { "field": "exact_o_linked_sites", "count": 7 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L7Q8-1", "uniprot_ac": "I3L7Q8", "uniprot_id": "I3L7Q8_PIG", "mass": { "chemical_mass": 63150.0, "monoisotopic_mass": 63150.0 }, "refseq": { "ac": "XP_020928493", "name": "anaphase-promoting complex subunit 7 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928493" }, "gene_names": [ { "name": "ANAPC7", "type": "recommended", "evidence": [ { "id": "I3L7Q8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ] }, { "name": "ANAPC7", "type": "synonym", "evidence": [ { "id": "XP_020928493", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928493" } ] } ], "protein_names": [ { "name": "Anaphase-promoting complex subunit 7", "type": "recommended", "evidence": [ { "id": "I3L7Q8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8/entry#names_and_taxonomy" } ] }, { "name": "Cyclosome subunit 7", "type": "synonym", "evidence": [ { "id": "I3L7Q8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8/entry#names_and_taxonomy" } ] }, { "name": "anaphase-promoting complex subunit 7 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020928493", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928493" } ] } ], "function": [ { "annotation": "Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. The APC/C complex catalyzes assembly of branched 'Lys-11'-/'Lys-48'-linked branched ubiquitin chains on target proteins. APC7 is not required for the assembly of the APC/C complex, but has an enzyme-substrate adapter activity mediating the processive ubiquitination of specific substrates. Involved in brain development through the specific ubiquitination and clearance of MKI67 from constitutive heterochromatin after neuronal progenitors exit mitosis.", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8#function" }, { "database": "UniProtKB", "id": "ARBA00056260", "url": "https://www.uniprot.org/uniprotkb/ARBA00056260#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANAPC7", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8", "locus": { "chromosome": "14", "start_pos": 31763243, "end_pos": 31789750, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030222", "url": "https://www.ensembl.org/id/ENSSSCG00000030222" } ] } } ], "crossref": [ { "id": "I3L7Q8", "url": "https://alphafold.ebi.ac.uk/entry/I3L7Q8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030222", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030222", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155743", "url": "https://www.ncbi.nlm.nih.gov/gene/100155743", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155743", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155743", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MGECYYY", "url": "https://omabrowser.org/oma/group/MGECYYY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A4X1U5C1", "url": "https://www.orthodb.org/?gene=A0A4X1U5C1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3L7Q8", "url": "https://www.orthodb.org/?gene=I3L7Q8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12558", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12558", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12558:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12558:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13181", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13181", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-141430", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174048", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174048", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174084", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174154", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174184", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-176407", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176407", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-176408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-176409", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176409", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-176412", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176412", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-179409", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-179409", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559582", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559582", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68867", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69017", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020928493", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020928493", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AIM2", "url": "https://www.uniprot.org/uniprotkb/A0A287AIM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIM2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U5C1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U5C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U5C1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7Q8-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTDATQEEDVDDMEGSGEEGDLEGSDSEAAQWADQEQWFGMQ", "length": 565, "header": "tr|I3L7Q8-1|I3L7Q8_PIG Isoform 1 of Anaphase-promoting complex subunit 7 OS=Sus scrofa OX=9823 GN=ANAPC7 PE=3 SV=4 CANONICAL=I3L7Q8-1" }, "isoforms": [ { "isoform_ac": "A0A287AIM2-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8/entry#A0A287AIM2-1", "sequence": { "sequence": "MNVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIALR", "length": 503, "header": "tr|A0A287AIM2-1|I3L7Q8_PIG Computationally mapped isoform of Anaphase-promoting complex subunit 7 OS=Sus scrofa OX=9823 GN=ANAPC7 PE=3 SV=3 CANONICAL=I3L7Q8-1" }, "locus": { "chromosome": "14", "start_pos": 31789644, "end_pos": 31766370, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057100.3", "url": "https://www.ensembl.org/id/ENSSSCT00000057100.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043735.3", "url": "https://www.ensembl.org/id/ENSSSCP00000043735.3" } ] } }, { "isoform_ac": "A0A4X1U5C1-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8/entry#A0A4X1U5C1-1", "sequence": { "sequence": "MGDFLGGILSLFSSELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTDATQEEDVDDMEGSGEEGDLEGSDSEAAQWADQEQWFGMQ", "length": 545, "header": "tr|A0A4X1U5C1-1|I3L7Q8_PIG Computationally mapped isoform of Anaphase-promoting complex subunit 7 OS=Sus scrofa OX=9823 GN=ANAPC7 PE=3 SV=1 CANONICAL=I3L7Q8-1" }, "locus": { "chromosome": "14", "start_pos": 31789031, "end_pos": 31764247, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000057222.2", "url": "https://www.ensembl.org/id/ENSSSCT00000057222.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000057690.2", "url": "https://www.ensembl.org/id/ENSSSCP00000057690.2" } ] } }, { "isoform_ac": "I3L7Q8-1", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8/entry#I3L7Q8-1", "sequence": { "sequence": "MNVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTDATQEEDVDDMEGSGEEGDLEGSDSEAAQWADQEQWFGMQ", "length": 565, "header": "tr|I3L7Q8-1|I3L7Q8_PIG Isoform 1 of Anaphase-promoting complex subunit 7 OS=Sus scrofa OX=9823 GN=ANAPC7 PE=3 SV=4 CANONICAL=I3L7Q8-1" }, "locus": { "chromosome": "14", "start_pos": 31789644, "end_pos": 31764247, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028521.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028521.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020064.4", "url": "https://www.ensembl.org/id/ENSSSCP00000020064.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 525, "start_aa": "Thr", "end_pos": 525, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr525", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIM2", "url": "https://www.uniprot.org/uniprotkb/A0A287AIM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155743", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155743", "resource": "KEGG Pathway" }, { "id": "R-SSC-141430", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-141430", "resource": "Reactome", "description": "Inactivation of APC/C via direct inhibition of the APC/C complex" }, { "id": "R-SSC-174048", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174048", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of Cyclin B" }, { "id": "R-SSC-174084", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "resource": "Reactome", "description": "Autodegradation of Cdh1 by Cdh1:APC/C" }, { "id": "R-SSC-174154", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of Securin" }, { "id": "R-SSC-174178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "resource": "Reactome", "description": "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1" }, { "id": "R-SSC-174184", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "resource": "Reactome", "description": "Cdc20:Phospho-APC/C mediated degradation of Cyclin A" }, { "id": "R-SSC-176407", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176407", "resource": "Reactome", "description": "Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase" }, { "id": "R-SSC-176408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176408", "resource": "Reactome", "description": "Regulation of APC/C activators between G1/S and early anaphase" }, { "id": "R-SSC-176409", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176409", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of mitotic proteins" }, { "id": "R-SSC-176412", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-176412", "resource": "Reactome", "description": "Phosphorylation of the APC/C" }, { "id": "R-SSC-179409", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-179409", "resource": "Reactome", "description": "APC-Cdc20 mediated degradation of Nek2A" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2559582", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559582", "resource": "Reactome", "description": "Senescence-Associated Secretory Phenotype (SASP)" }, { "id": "R-SSC-68867", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "resource": "Reactome", "description": "Assembly of the pre-replicative complex" }, { "id": "R-SSC-69017", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "resource": "Reactome", "description": "CDK-mediated phosphorylation and removal of Cdc6" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A9C3Q3-1", "protein_name": "Anaphase-promoting complex subunit 7", "gene_name": "anapc7", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNVIDHVRDMAAAGLHSNVRIISSLLLTMSTNNPELFSPSQKYQLLVYHADAIFHDKEYRNAACKYNMALQQKKMLSKTSKVRPSSTGSTTSAVQAQNLPSEIEVKYKIAECYTILKLDKDAISVLDGIPSRQRTPKINMMLANLYRKAGQERSAVTSYKEVLRQCPLALDAIIGLLSLSVKGAEVASMTMDVIQSIPNLDWLSVWIKAHAFIHGGDNQRAINTICSLEKKSLLRDNVDLLVTLADVYFRAGDTKNSILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEVLGGRLFNISDQHAEPWVISGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGVALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMGMANNIYKTLGANAQTLTILATVCLEDPMTQEKAKTLLDKALAQRPDYIKAVVKKAELLSREQKYEEGIALLRNTLANQSDCVLHRMLGDFLVAVNDYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTDATVELDGDDMEGSGEEGDLEGSDSEAAQWADQEQWFGMQ", "length": 566 }, "evidence": [ { "id": "I3L7Q8", "url": "https://omabrowser.org/oma/group/I3L7Q8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZIT4-1", "protein_name": "Anaphase-promoting complex subunit 7", "gene_name": "Anapc7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMGQPLSPHDCLFLRRHIRSNLYLRGAEPRLDQKDPAAAAILELSLRLGSAPGGSVSCCWVTVSPGRMSVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKLDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALAQRPDYVKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVSVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEGSPTDATQEDDVDDMEGSGEEGDLEGSDSEAAQWADQEQWFGMQ", "length": 632 }, "evidence": [ { "id": "I3L7Q8", "url": "https://omabrowser.org/oma/group/I3L7Q8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BM34-1", "protein_name": "Anaphase-promoting complex subunit 7", "gene_name": "ANAPC7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDPGEAAILDSSPRSFSRLFALPPPLSAAFLGRMNVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHVGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTDATQEEDVDDMEGSGEEGDLEGSDSEAAQWADQEQWFGMQ", "length": 598 }, "evidence": [ { "id": "I3L7Q8", "url": "https://omabrowser.org/oma/group/I3L7Q8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3H237-1", "protein_name": "Anaphase-promoting complex subunit 7", "gene_name": "Anapc7", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAWSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKLDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDSKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASSSIREAMVMANNVYKTLGASAQTLTLLATVCLEDPVTQEKAKALLDKALAQRPDYVKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTDATQEEDVDDMEGSGEEGDLEGSDSEAAQWADQEQWFGMQ", "length": 565 }, "evidence": [ { "id": "I3L7Q8", "url": "https://omabrowser.org/oma/group/I3L7Q8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q54D58-1", "protein_name": "Anaphase-promoting complex subunit 7", "gene_name": "anapc7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQQLPMVNVELMISNLRILVESKQFSSAEFLGNFVISVPNQQKTPHQNIISFSLFGDSLFGKNEFVRSLKYFKQSLDILFKVYNNPNNNNNNNNKQADFDNKQFEYELKYKISLCYIKINRNNLAISYLESIPFSSRGLDTHLTIARLYKDIGKEKSKECIISYKEVIKLCPLCLEAINSLKEMGENVDQVLIPSINKFQQKNNSFNSNNIIDLSWISLLSMSQYEMKRNQPEKSLILLKKVESKFSTNLYVLEKLALSYLYHDEPSIINTFNIFQKIRLLDPYYIGSMDIFCSLLKRRSLQFELNKVCNDLVASNPYCAETWTSVALFYFLKENVEKSLENVDRAISIKESHEFAHSLKGEILLSLDEPREALPSLERAFQLSKNILTARELVRCHLILNQMKEALVVAETINNLSPDYSKTMALLGMVLANQPEEREEARKILTKALTLSPHCTDTVLTLSKLNVVEGRFQEAIDILNSQLEYQETDLMHTEIAGVYLTKDYHEDAMIHYNSALEINPQYEPASRGIARLELIMKGIDPDQELDQENDDDDQEEGEGENDQEENDDDDNDDDDEYIS", "length": 580 }, "evidence": [ { "id": "I3L7Q8", "url": "https://omabrowser.org/oma/group/I3L7Q8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VY89-1", "protein_name": "Anaphase-promoting complex subunit 7", "gene_name": "APC7", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVPKEQIATLIEHGLYDSAEMLGCFLVSSPTVSAETSPQLKAENLILLGDALFHQREHRRAIHTYKQALHHYTRIPKQSSGISRSSLSLSTRSSVNASSISAINENEVRFKIASSHFALNETKAAIAEMESVKTRSLEMNILMAKLHRNSGYNRGAIAFYKECLRQCPYVLEAVIGLAELGVSAKDIISSFTQTSNRSAKVSLDQIDPTRWLQRYVEAQCCVASHAYKGALELFAELLQRFPNNVHLLTETAKVEAIIGKNDEAIMRFEKVRSIDPYTLTSMDEYAMLLQIKCDYSRLNKLVHDLLSVDHTRAEVFVALSVLWERKDARTALSYAEKSIRVDERHIPGYIMKGNLLLQAKRPEAAAIAFRAAQNLRSDLRSYQGLVHSYLAFGKTKEALYTAREAMNAMPQSAKALKLVGDVHAFTSSGREKAKKFYESGLRLEPGYLGAVLALAELHLMEGRNGDAVSLLERYLKDYADDSLHVKLAQVFAATNMLQDSLSHFQAALRINPQNEAAKKGLDRLEKQMKGIDPDATDENDENDVEDVDGDTEEAELM", "length": 558 }, "evidence": [ { "id": "I3L7Q8", "url": "https://omabrowser.org/oma/group/I3L7Q8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9UJX3-1", "protein_name": "Anaphase-promoting complex subunit 7", "gene_name": "ANAPC7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKQDKDAIAILDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHTGDNSRAISTICSLEKKSLLRDNVDLLGSLADLYFRAGDNKNSVLKFEQAQMLDPYLIKGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALTQRPDYIKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTDATQEEDVDDMEGSGEEGDLEGSDSEAAQWADQEQWFGMQ", "length": 565 }, "evidence": [ { "id": "I3L7Q8", "url": "https://omabrowser.org/oma/group/I3L7Q8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W3Y6-1", "protein_name": "Anaphase promoting complex subunit 7, isoform A", "gene_name": "APC7", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MASFLIVVEKMEIALFANAKKLYDHKLYECVIPAADLLRTVLKNDRYVATLDVEYQVLLYLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHGTTKKSEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAIGLMAVLCGQEGGCEQDSADMDYLFAKVSSEVKYTASHWFAHAQLLYDEGKFERGLNFVEKCLDSEPRNHEALILRGRLLIALERHTQAVCAFRTAQMVAPYRFEIYRGLFHSYLAQKRFKEANALCNWTIRLFQNSPRSFTMFGRTLFLFPDPRMRRTARKFAEKSLKINHIYTPAVNLIADICQVEGPTKAIIKLLEKHVIIFPKVNLLNHLGDIMRKQKEPVKAMEYYYKALRQDPKSKRTLRGLRLLAKSDDESPVLDESDDIGMDNQQSINDLTTLCEATNAQGAEGAESVENSREASSSAAARSGQEEDVDEHDWIDVPDGMSY", "length": 615 }, "evidence": [ { "id": "I3L7Q8", "url": "https://omabrowser.org/oma/group/I3L7Q8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9WVM3-1", "protein_name": "Anaphase-promoting complex subunit 7", "gene_name": "Anapc7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVIDHVRDMAAAGLHSNVRLLSSLLLTMSNNNPELFSPSQKYQLLVYHADSLFHDKEYRNAVSKYAMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKMAECYTMLKLDKDAIAVLDGIPSRQRTPKINMMLANLYKKAGQERPSVTSYKEVLRQCPLALDAILGLLSLSVKGAEVASMTMNVIQTVPNLDWLSVWIKAYAFVHTGDNSRAINTICSLEKKSLLRDNVDLLGSLADLYFRAGDSKNSVLKFEQAQMLDPYLIRGMDVYGYLLAREGRLEDVENLGCRLFNISDQHAEPWVVSGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYEGLIECYLASNSIREAMVMANNVYKTLGANAQTLTLLATVCLEDPVTQEKAKTLLDKALAQRPDYVKAVVKKAELLSREQKYEDGIALLRNALANQSDCVLHRILGDFLVAVNEYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTDATQEEDVDDMEGSGEEGDLEGSDSEAAQWADQEQWFGMQ", "length": 565 }, "evidence": [ { "id": "I3L7Q8", "url": "https://omabrowser.org/oma/group/I3L7Q8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "anaphase-promoting complex-dependent catabolic process", "id": "GO:0031145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031145", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "protein K11-linked ubiquitination", "id": "GO:0070979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070979", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "positive regulation of mitotic metaphase/anaphase transition", "id": "GO:0045842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045842", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "protein K48-linked ubiquitination", "id": "GO:0070936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070936", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "protein branched polyubiquitination", "id": "GO:0141198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141198", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "intercellular bridge", "id": "GO:0045171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045171", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "anaphase-promoting complex", "id": "GO:0005680", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005680", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "heterochromatin", "id": "GO:0000792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000792", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "mitotic spindle", "id": "GO:0072686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072686", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein phosphatase binding", "id": "GO:0019903", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019903", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" }, { "name": "enzyme-substrate adaptor activity", "id": "GO:0140767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140767", "evidence": [ { "database": "UniProtKB", "id": "I3L7Q8", "url": "https://www.uniprot.org/uniprotkb/I3L7Q8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 299, "end_pos": 301, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L7Q8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 565, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L7Q8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L7Q8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 525 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 299, "end_pos": 301 }, { "start_pos": 471, "end_pos": 473 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PUU1-1", "uniprot_ac": "F6PUU1", "uniprot_id": "F6PUU1_PIG", "mass": { "chemical_mass": 63430.0, "monoisotopic_mass": 63430.0 }, "refseq": {}, "gene_names": [ { "name": "DNAJA4", "type": "recommended", "evidence": [ { "id": "F6PUU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ] } ], "protein_names": [ { "name": "DnaJ heat shock protein family (Hsp40) member A4", "type": "synonym", "evidence": [ { "id": "F6PUU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PUU1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DNAJA4", "url": "https://www.uniprot.org/uniprotkb/F6PUU1", "locus": { "chromosome": "7", "start_pos": 47656541, "end_pos": 47675582, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000037646", "url": "https://www.ensembl.org/id/ENSSSCG00000037646" } ] } } ], "crossref": [ { "id": "F6PUU1", "url": "https://alphafold.ebi.ac.uk/entry/F6PUU1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037646", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037646", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06257", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06257", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10719", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10719", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10747", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10747", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008971", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008971", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036869", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036869", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43888", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43888", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00226", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00226", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00684", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00684", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01556", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01556", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3371497", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371497", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AIR7", "url": "https://www.uniprot.org/uniprotkb/A0A287AIR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AIR7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AIR7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PUU1-1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTKQRAATPPGRGRVRTVGRSPPSPTPPPGFPPTPPSRPRSPGANRTHGPAEGKGDSPGAAGLSSEGTLHAEAIFQAPQHGPRRQPELELRGVRRAAGGAGGRRHRVSWGVGVPAAYSPRRASPQPRAPPEPPRSFWVFVASLSPCGTFRRRRIKPAAEEAAARVRRCRARRDKMVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRGKNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPVCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCENCSGAKVIREKKIIEVHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLCEALCGFKKTIKTLDDRVLVITSKSGEVIKHGDLKCVRNEGMPIYKAPLEKGTLIIQFLVIFPEKHWLPQDKLPQLEALLPPRQKVRITDDMDQVELKEFNPNEQNWRQHREAYEEDDDGPRAGVQCQTA", "length": 571, "header": "tr|F6PUU1-1|F6PUU1_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member A4 OS=Sus scrofa OX=9823 GN=DNAJA4 PE=1 SV=1 CANONICAL=F6PUU1-1" }, "isoforms": [ { "isoform_ac": "A0A287AIR7-1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1/entry#A0A287AIR7-1", "sequence": { "sequence": "MVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRGKNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPVCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCENCSGAKVIREKKIIEVHVEKGEAAQLRSPPLVGMLLRG", "length": 233, "header": "tr|A0A287AIR7-1|F6PUU1_PIG Computationally mapped isoform of DnaJ heat shock protein family (Hsp40) member A4 OS=Sus scrofa OX=9823 GN=DNAJA4 PE=1 SV=1 CANONICAL=F6PUU1-1" }, "locus": { "chromosome": "7", "start_pos": 47674712, "end_pos": 47665497, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055843.2", "url": "https://www.ensembl.org/id/ENSSSCT00000055843.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043898.1", "url": "https://www.ensembl.org/id/ENSSSCP00000043898.1" } ] } }, { "isoform_ac": "F6PUU1-1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1/entry#F6PUU1-1", "sequence": { "sequence": "MTKQRAATPPGRGRVRTVGRSPPSPTPPPGFPPTPPSRPRSPGANRTHGPAEGKGDSPGAAGLSSEGTLHAEAIFQAPQHGPRRQPELELRGVRRAAGGAGGRRHRVSWGVGVPAAYSPRRASPQPRAPPEPPRSFWVFVASLSPCGTFRRRRIKPAAEEAAARVRRCRARRDKMVKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDIYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRGKNVVHQLSVTLEDLYNGVTKKLALQKNVICEKCEGVGGKKGSVEKCPVCKGRGMQIHIQQIGPGMVQQIQTVCIECKGQGERINPKDRCENCSGAKVIREKKIIEVHVEKGMKDGQKILFHGEGDQEPELEPGDVIIVLDQKDHSVFQRRGHDLIMKMKIQLCEALCGFKKTIKTLDDRVLVITSKSGEVIKHGDLKCVRNEGMPIYKAPLEKGTLIIQFLVIFPEKHWLPQDKLPQLEALLPPRQKVRITDDMDQVELKEFNPNEQNWRQHREAYEEDDDGPRAGVQCQTA", "length": 571, "header": "tr|F6PUU1-1|F6PUU1_PIG Isoform 1 of DnaJ heat shock protein family (Hsp40) member A4 OS=Sus scrofa OX=9823 GN=DNAJA4 PE=1 SV=1 CANONICAL=F6PUU1-1" }, "locus": { "chromosome": "7", "start_pos": 47675383, "end_pos": 47662106, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001965.4", "url": "https://www.ensembl.org/id/ENSSSCT00000001965.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001916.2", "url": "https://www.ensembl.org/id/ENSSSCP00000001916.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 26, "start_aa": "Thr", "end_pos": 26, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr26", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 34, "start_aa": "Thr", "end_pos": 34, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr34", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AIR7", "url": "https://www.uniprot.org/uniprotkb/A0A287AIR7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-3371497", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371497", "resource": "Reactome", "description": "HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "Hsp70 protein binding", "id": "GO:0030544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030544", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "ATPase activator activity", "id": "GO:0001671", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001671", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "negative regulation of inclusion body assembly", "id": "GO:0090084", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090084", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "cellular response to heat", "id": "GO:0034605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034605", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "negative regulation of endothelial cell migration", "id": "GO:0010596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010596", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "protein refolding", "id": "GO:0042026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042026", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F6PUU1", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 370, "end_pos": 372, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6PUU1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 571, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6PUU1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6PUU1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F6PUU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" }, { "id": "PS51188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CR-type", "eco_id": "ECO_0000259", "start_pos": 296, "end_pos": 380, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F6PUU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PUU1" }, { "id": "PS50076", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50076" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "J", "eco_id": "ECO_0000259", "start_pos": 180, "end_pos": 242, "start_aa": "Gln", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 26, 34 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 370, "end_pos": 372 }, { "start_pos": 45, "end_pos": 47 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L648-1", "uniprot_ac": "I3L648", "uniprot_id": "I3L648_PIG", "mass": { "chemical_mass": 35992.0, "monoisotopic_mass": 35992.0 }, "refseq": {}, "gene_names": [ { "name": "SULT1C3", "type": "recommended", "evidence": [ { "id": "I3L648", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L648" } ] } ], "protein_names": [ { "name": "Sulfotransferase", "type": "recommended", "evidence": [ { "id": "I3L648", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L648/entry#names_and_taxonomy" } ] }, { "name": "2.8.2.-", "type": "synonym", "evidence": [ { "id": "I3L648", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L648/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L648", "url": "https://www.uniprot.org/uniprotkb/I3L648" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SULT1C3", "url": "https://www.uniprot.org/uniprotkb/I3L648", "locus": { "chromosome": "3", "start_pos": 47838558, "end_pos": 47856943, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028691", "url": "https://www.ensembl.org/id/ENSSSCG00000028691" } ] } } ], "crossref": [ { "id": "I3L648", "url": "https://alphafold.ebi.ac.uk/entry/I3L648", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028691", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028691", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623656", "url": "https://www.ncbi.nlm.nih.gov/gene/100623656", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623656", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623656", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CQRANTY", "url": "https://omabrowser.org/oma/group/CQRANTY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L648", "url": "https://www.orthodb.org/?gene=I3L648", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11783", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11783", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00685", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "70607", "url": "https://www.rhea-db.org/rhea/70607", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287AJ11", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AJ11-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L648", "url": "https://www.uniprot.org/uniprotkb/I3L648", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L648-1", "url": "https://www.uniprot.org/uniprotkb/I3L648-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSWEEMKDLQLEEKPLPLETKELNGILMTKMMSDNWDKIWNFQAKPDDLLIATYTKAGTTWTQEIVDMIHNDGDVQKCQRANTFDRHPFIEWTLPLPLNSGLDLAIKMPSPRTLKTHLPVQMVPPSFWKENVKIIYMARNAKDSLVSYYHFSRMNKMFPDPGPWEEYIEAFKAGKVLWGSWYDHVRGWWDAKDRHRILYLFYEDMKEDPKREIQKILKFLEKDISEEVLNKIIHHTSFDVMKQNPMANYTTIPTSMMDHSISPFMRKGVPGDWKNHFTVAQNKDFDEDYEKKMAGTTLTFRTTI", "length": 304, "header": "tr|I3L648-1|I3L648_PIG Isoform 1 of Sulfotransferase OS=Sus scrofa OX=9823 GN=SULT1C3 PE=1 SV=2 CANONICAL=I3L648-1" }, "isoforms": [ { "isoform_ac": "A0A287AJ11-1", "url": "https://www.uniprot.org/uniprotkb/I3L648/entry#A0A287AJ11-1", "sequence": { "sequence": "MSWEEMKDLQLEEKPLPLETKELNGILMTKMMSDNWDKIWNFQAKPDDLLIATYTKAGTTWTQEIVDMIHNDGDVQKCQRANTFDRHPFIEWTLPLPLNSGTCPAGPCGTVTCAGRFAPGRRVTETISKGNWKGIIYMARNAKDSLVSYYHFSRMNKMFPDPGPWEEYIEAFKAGKVLWGSWYDHVRGWWDAKDRHRILYLFYEDMKEDPKREIQKILKFLEKDISEEVLNKIIHHTSFDVMKQNPMANYTTIPTSMMDHSISPFMRKGA", "length": 270, "header": "tr|A0A287AJ11-1|I3L648_PIG Computationally mapped isoform of Sulfotransferase OS=Sus scrofa OX=9823 GN=SULT1C3 PE=1 SV=2 CANONICAL=I3L648-1" }, "locus": { "chromosome": "3", "start_pos": 47856915, "end_pos": 47840040, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053868.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053868.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000043992.2", "url": "https://www.ensembl.org/id/ENSSSCP00000043992.2" } ] } }, { "isoform_ac": "I3L648-1", "url": "https://www.uniprot.org/uniprotkb/I3L648/entry#I3L648-1", "sequence": { "sequence": "MSWEEMKDLQLEEKPLPLETKELNGILMTKMMSDNWDKIWNFQAKPDDLLIATYTKAGTTWTQEIVDMIHNDGDVQKCQRANTFDRHPFIEWTLPLPLNSGLDLAIKMPSPRTLKTHLPVQMVPPSFWKENVKIIYMARNAKDSLVSYYHFSRMNKMFPDPGPWEEYIEAFKAGKVLWGSWYDHVRGWWDAKDRHRILYLFYEDMKEDPKREIQKILKFLEKDISEEVLNKIIHHTSFDVMKQNPMANYTTIPTSMMDHSISPFMRKGVPGDWKNHFTVAQNKDFDEDYEKKMAGTTLTFRTTI", "length": 304, "header": "tr|I3L648-1|I3L648_PIG Isoform 1 of Sulfotransferase OS=Sus scrofa OX=9823 GN=SULT1C3 PE=1 SV=2 CANONICAL=I3L648-1" }, "locus": { "chromosome": "3", "start_pos": 47856915, "end_pos": 47839869, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027549.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027549.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019499.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019499.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AJ11", "url": "https://www.uniprot.org/uniprotkb/A0A287AJ11" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623656", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623656", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IL54-1", "protein_name": "Sulfotransferase", "gene_name": "LOC100759957", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSLEEIKSLHLEEQHLQPETKEVNGILMSKMMSDNWDKIWNFQAKPDDLLIATYAKAGTTWTQEIVDMIQNDGDVQKCQRANTFDRHPFLEWTLPPPLNSGLDLANKMPSPRTLKTHLPVQMLPPSFWKENSKIIYVARNAKDCLVSYYHFSRMNKMLPDPGTWEEYVETFKAGKVLWGSWYDHVKGWWDVKDQHHILYLFYEDMKEDPKREIKKIVKFLEKDISEEVLNKVIYHTSFDVMKQNPMANYTTLPSSIMDHSISPFMRKGMPGDWKNYFTVAQSEDFDEDYRKKMAGSTITFRTEI", "length": 304 }, "evidence": [ { "id": "I3L648", "url": "https://omabrowser.org/oma/group/I3L648/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BIS9-1", "protein_name": "Sulfotransferase", "gene_name": "SULT1C3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLEEMKDLHLEEKYLQPETKEVNGILMTKMISDNWDKIWNFQAKPDDLLIATYAKAGTTWTQEIVDMIQNDGDLQKCQRANTFDRHPFIEWALPPPLSSGLDLANKMPSPRTLKTHLPVQMLPPSFWKENAKIIYVARNAKDCLVSYYHFSRMNKMVPDPGSWEEYVETFKAGKVLWGSWYDHVKGWWHAKDQHRILYLFYEDMKEDPRREIRKILKFLEKEVSEEVLDKIIHHTSFEVMKENPMANYTTLPTSIMDHSISPFMRRGMPGDWKNYFTVAQNEDFDKDYERKMAGSTLTFRTAL", "length": 304 }, "evidence": [ { "id": "I3L648", "url": "https://omabrowser.org/oma/group/I3L648/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P50237-1", "protein_name": "Sulfotransferase 1C1", "gene_name": "Sult1c1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLEKMKDLHLGEQDLQPETREVNGILMSKLMSDNWDKIWNFQAKPDDLLIATYAKAGTTWTQEIVDMIQNDGDVQKCQRANTYDRHPFIEWTLPSPLNSGLDLANKMPSPRTLKTHLPVHMLPPSFWKENSKIIYVARNAKDCLVSYYYFSRMNKMLPDPGTLGEYIEQFKAGKVLWGSWYDHVKGWWDVKDQHRILYLFYEDMKEDPKREIKKIAKFLEKDISEEVLNKIIYHTSFDVMKENPMANYTTLPSSIMDHSISPFMRKGMPGDWKNYFTVAQSEDFDEDYRRKMAGSNITFRTEI", "length": 304 }, "evidence": [ { "id": "I3L648", "url": "https://omabrowser.org/oma/group/I3L648/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6IMI6-1", "protein_name": "Sulfotransferase 1C3", "gene_name": "SULT1C3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKIEKNAPTMEKKPELFNIMEVDGVPTLILSKEWWEKVCNFQAKPDDLILATYPKSGTTWMHEILDMILNDGDVEKCKRAQTLDRHAFLELKFPHKEKPDLEFVLEMSSPQLIKTHLPSHLIPPSIWKENCKIVYVARNPKDCLVSYYHFHRMASFMPDPQNLEEFYEKFMSGKVVGGSWFDHVKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKIIYHTSFDVMKQNPMTNYTTLPTSIMDHSISPFMRKGMPGDWKNYFTVAQNEEFDKDYQKKMAGSTLTFRTEI", "length": 304 }, "evidence": [ { "id": "I3L648", "url": "https://omabrowser.org/oma/group/I3L648/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80VR3-1", "protein_name": "Sulfotransferase 1C1", "gene_name": "Sult1c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLEKLKDLHLDEQNMQPETREVNGILMSKMMSENWDKIWNFQAKPDDLLIATYAKAGTTWTQEIVDMIQNDGDVQKCQRANTYDRHPFIEWTLPPPLNSGLDLANKMPSPRTLKTHLPVQMLPPSFWKENSKIIYVARNAKDCLVSYYYFSRMNKMLPDPGTLGEYIETFKAGKVLWGSWYDHVKGWWDVKDKHRILYLFYEDMKEDPKREIKKIVKFLEKDISEEVLNKIIHHTSFDVMKQNPMANYTTLPSSIMDHSISPFMRKGMPGDWKNYFTVAQSEDFDEDYRKKMAGSTITFRTEI", "length": 304 }, "evidence": [ { "id": "I3L648", "url": "https://omabrowser.org/oma/group/I3L648/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "sulfation", "id": "GO:0051923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051923", "evidence": [ { "database": "UniProtKB", "id": "I3L648", "url": "https://www.uniprot.org/uniprotkb/I3L648" } ], "pmid": "" }, { "name": "xenobiotic metabolic process", "id": "GO:0006805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006805", "evidence": [ { "database": "UniProtKB", "id": "I3L648", "url": "https://www.uniprot.org/uniprotkb/I3L648" } ], "pmid": "" }, { "name": "3'-phosphoadenosine 5'-phosphosulfate metabolic process", "id": "GO:0050427", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050427", "evidence": [ { "database": "UniProtKB", "id": "I3L648", "url": "https://www.uniprot.org/uniprotkb/I3L648" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "aryl sulfotransferase activity", "id": "GO:0004062", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004062", "evidence": [ { "database": "UniProtKB", "id": "I3L648", "url": "https://www.uniprot.org/uniprotkb/I3L648" } ], "pmid": "" }, { "name": "3'-phosphoadenosine 5'-phosphosulfate binding", "id": "GO:0050656", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050656", "evidence": [ { "database": "UniProtKB", "id": "I3L648", "url": "https://www.uniprot.org/uniprotkb/I3L648" } ], "pmid": "" }, { "name": "alcohol sulfotransferase activity", "id": "GO:0004027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004027", "evidence": [ { "database": "UniProtKB", "id": "I3L648", "url": "https://www.uniprot.org/uniprotkb/I3L648" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L648", "url": "https://www.uniprot.org/uniprotkb/I3L648" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "70607", "name": "", "equation": "4-ethylphenol + 3'-phosphoadenylyl sulfate = 4-ethylphenyl sulfate + adenosine 3',5'-bisphosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "70607", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70607" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L648-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 304, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L648-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L648" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L648", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L648" }, { "id": "PF00685", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00685" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sulfotransferase", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 296, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 248, "end_pos": 250 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQR3-1", "uniprot_ac": "F1SQR3", "uniprot_id": "F1SQR3_PIG", "mass": { "chemical_mass": 69913.0, "monoisotopic_mass": 69913.0 }, "refseq": { "ac": "XP_003481795", "name": "netrin-4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481795" }, "gene_names": [ { "name": "NTN4", "type": "recommended", "evidence": [ { "id": "F1SQR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ] }, { "name": "NTN4", "type": "synonym", "evidence": [ { "id": "XP_003481795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481795" } ] } ], "protein_names": [ { "name": "Netrin-4", "type": "recommended", "evidence": [ { "id": "F1SQR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQR3/entry#names_and_taxonomy" } ] }, { "name": "netrin-4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003481795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481795" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NTN4", "url": "https://www.uniprot.org/uniprotkb/F1SQR3", "locus": { "chromosome": "5", "start_pos": 87784702, "end_pos": 87671873, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000896", "url": "https://www.ensembl.org/id/ENSSSCG00000000896" } ] } } ], "crossref": [ { "id": "F1SQR3", "url": "https://alphafold.ebi.ac.uk/entry/F1SQR3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000896", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000896", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00055", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00055", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03578", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03578", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516554", "url": "https://www.ncbi.nlm.nih.gov/gene/100516554", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001134", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001134", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008211", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008211", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035811", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035811", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516554", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516554", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQR3", "url": "https://www.orthodb.org/?gene=F1SQR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574:SF282", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574:SF282", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00053", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00053", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00055", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00055", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24973", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24973", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-373752", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373752", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003481795", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481795", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AL62", "url": "https://www.uniprot.org/uniprotkb/A0A287AL62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AL62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AL62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSCARLLLLWGCSALAAGLNGVAGGSSRCEKACNPQMGNLALGRKLWADTTCGQNATELYCFYSENTDLTCQQPKCDKCNAAQPHLAHLPAAMADSSFRFPRTWWQSAEDVHREKIQLDLEAEFYFTHLIMVFKSPRPAAMVLDRSQDFGKTWMPYKYFATNCSATFGLEDDVVKKGAICTSRYSNPFPCTGGEVIFRALSPPYDVEDPYSAKAQEQLKITNLRVQLLKRQSCPCQRNDPNAKPQHFTHYAIYDFIVKGSCFCNGHADQCVPVDGFKPVKAPGAFHVVHGKCMCKHNTAGTHCQHCAPLYNDRPWEAADGKTGSPKECRTCKCNGHADACHFDINVWEASGNRSGGVCNDCQHNTEGQHCQRCKPGFYRDLRRPFSAPDACKLCSCHPVGSAVLPFSSVTFCDPSNGDCPCKPGVAGPHCDRCMVGYWGFGEYGCRPCDCAGSCDPLTGDCTSSNTDIDWYHDIPDFHSMHNKSEPKWEWEDEQGFSALRHSGKCECKEQVLGNSKAFCRMKYSYVLKIKILSAHDKGSHAEVNVKIKKVLKSTKLKILRGKRTLYPESWTNRGCTCPILNPGLEYLVAGHEDVRTGKLVVNMKSFVQHWKPSLGRKVMDILKRECK", "length": 628, "header": "tr|F1SQR3-1|F1SQR3_PIG Isoform 1 of Netrin-4 OS=Sus scrofa OX=9823 GN=NTN4 PE=4 SV=2 CANONICAL=F1SQR3-1" }, "isoforms": [ { "isoform_ac": "A0A287AL62-1", "url": "https://www.uniprot.org/uniprotkb/F1SQR3/entry#A0A287AL62-1", "sequence": { "sequence": "MGSCARLLLLWGCSALAAGLNGVAGGSSRCEKACNPQMGNLALGRKLWADTTCGQNATELYCFYSENTDLTCQQPKCDKCNAAQPHLAHLPAAMADSSFRFPRTWWQSAEDVHREKIQLDLEAEFYFTHLIMVFKSPRPAAMVLDRSQDFGKTWMPYKYFATNCSATFGLEDDVVKKGAICTSRYSNPFPCTGGEVIFRALSPPYDVEDPYSAKAQEQLKITNLRVQLLKRQSCPCQRNDPNAKPQHFTHYAIYDFIVKGSCFCNGHADQCVPVDGFKPVKAPGAFHVVHGKCMCKHNTAGTHCQHCAPLYNDRPWEAADGKTGSPKECRTCKCNGHADACHFDINVWEASGNRSGGVCNDCQHNTEGQHCQRCKPGFYRDLRRPFSAPDACKLCSCHPVGSAVLPFSSVTFCDPSNGDCPCKPGVAGPHCDRCMVGYWGFGEYGCRPCDCAGSCDPLTGDCTSSNTDIDWYHDIPDFHSMHNKSEPKWEWEDEQGFSALRHSVLKIKILSAHDKGSHAEVNVKIKKVLKSTKLKILRGKRTLYPESWTNRGCTCPILNPGLEYLVAGHEDVRTGKLVVNMKSFVQHWKPSLGRKVMDILKRECK", "length": 605, "header": "tr|A0A287AL62-1|F1SQR3_PIG Computationally mapped isoform of Netrin-4 OS=Sus scrofa OX=9823 GN=NTN4 PE=4 SV=2 CANONICAL=F1SQR3-1" }, "locus": { "chromosome": "5", "start_pos": 87783403, "end_pos": 87672423, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000050608.3", "url": "https://www.ensembl.org/id/ENSSSCT00000050608.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044645.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044645.2" } ] } }, { "isoform_ac": "F1SQR3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQR3/entry#F1SQR3-1", "sequence": { "sequence": "MGSCARLLLLWGCSALAAGLNGVAGGSSRCEKACNPQMGNLALGRKLWADTTCGQNATELYCFYSENTDLTCQQPKCDKCNAAQPHLAHLPAAMADSSFRFPRTWWQSAEDVHREKIQLDLEAEFYFTHLIMVFKSPRPAAMVLDRSQDFGKTWMPYKYFATNCSATFGLEDDVVKKGAICTSRYSNPFPCTGGEVIFRALSPPYDVEDPYSAKAQEQLKITNLRVQLLKRQSCPCQRNDPNAKPQHFTHYAIYDFIVKGSCFCNGHADQCVPVDGFKPVKAPGAFHVVHGKCMCKHNTAGTHCQHCAPLYNDRPWEAADGKTGSPKECRTCKCNGHADACHFDINVWEASGNRSGGVCNDCQHNTEGQHCQRCKPGFYRDLRRPFSAPDACKLCSCHPVGSAVLPFSSVTFCDPSNGDCPCKPGVAGPHCDRCMVGYWGFGEYGCRPCDCAGSCDPLTGDCTSSNTDIDWYHDIPDFHSMHNKSEPKWEWEDEQGFSALRHSGKCECKEQVLGNSKAFCRMKYSYVLKIKILSAHDKGSHAEVNVKIKKVLKSTKLKILRGKRTLYPESWTNRGCTCPILNPGLEYLVAGHEDVRTGKLVVNMKSFVQHWKPSLGRKVMDILKRECK", "length": 628, "header": "tr|F1SQR3-1|F1SQR3_PIG Isoform 1 of Netrin-4 OS=Sus scrofa OX=9823 GN=NTN4 PE=4 SV=2 CANONICAL=F1SQR3-1" }, "locus": { "chromosome": "5", "start_pos": 87783403, "end_pos": 87672423, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000980.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000980.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000959.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000959.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AL62", "url": "https://www.uniprot.org/uniprotkb/A0A287AL62" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516554", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516554", "resource": "KEGG Pathway" }, { "id": "R-SSC-373752", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373752", "resource": "Reactome", "description": "Netrin-1 signaling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "pmid": "" }, { "name": "laminin complex", "id": "GO:0043256", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043256", "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "pmid": "" }, { "name": "animal organ morphogenesis", "id": "GO:0009887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009887", "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "pmid": "" }, { "name": "substrate adhesion-dependent cell spreading", "id": "GO:0034446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034446", "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "pmid": "" }, { "name": "tissue development", "id": "GO:0009888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009888", "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "pmid": "" }, { "name": "basement membrane assembly", "id": "GO:0070831", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070831", "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "laminin-1 binding", "id": "GO:0043237", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043237", "evidence": [ { "database": "UniProtKB", "id": "F1SQR3", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 353, "end_pos": 355, "annotation": "n_glycosylation_sequon" }, { "start_pos": 483, "end_pos": 485, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQR3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 628, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQR3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQR3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" }, { "id": "PS50027", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50027" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin EGF-like", "eco_id": "ECO_0000259", "start_pos": 332, "end_pos": 394, "start_aa": "Cys", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" }, { "id": "PS51117", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51117" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin N-terminal", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 261, "start_aa": "Cys", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQR3" }, { "id": "PS50189", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50189" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NTR", "eco_id": "ECO_0000259", "start_pos": 506, "end_pos": 627, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 353, "end_pos": 355 }, { "start_pos": 483, "end_pos": 485 }, { "start_pos": 56, "end_pos": 58 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQG1-1", "uniprot_ac": "F1SQG1", "uniprot_id": "F1SQG1_PIG", "mass": { "chemical_mass": 197458.0, "monoisotopic_mass": 197458.0 }, "refseq": { "ac": "XP_005659689", "name": "centrosomal protein of 152 kDa isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659689" }, "gene_names": [ { "name": "CEP152", "type": "recommended", "evidence": [ { "id": "F1SQG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ] }, { "name": "CEP152", "type": "synonym", "evidence": [ { "id": "XP_005659689", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659689" } ] } ], "protein_names": [ { "name": "Centrosomal protein 152", "type": "synonym", "evidence": [ { "id": "F1SQG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQG1/entry#names_and_taxonomy" } ] }, { "name": "centrosomal protein of 152 kDa isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005659689", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659689" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CEP152", "url": "https://www.uniprot.org/uniprotkb/F1SQG1", "locus": { "chromosome": "1", "start_pos": 122979845, "end_pos": 122876141, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004657", "url": "https://www.ensembl.org/id/ENSSSCG00000004657" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004657", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004657", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152345", "url": "https://www.ncbi.nlm.nih.gov/gene/100152345", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051235", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057659", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057659", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057664", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057664", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152345", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152345", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQG1", "url": "https://www.orthodb.org/?gene=F1SQG1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3LGS4", "url": "https://www.orthodb.org/?gene=I3LGS4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10337", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10337", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10337:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10337:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25769", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25769", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25770", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25770", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2565942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380259", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380284", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005659689", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659689", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AVF1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AVF1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AVF1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQG1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LGS4", "url": "https://www.uniprot.org/uniprotkb/I3LGS4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LGS4-1", "url": "https://www.uniprot.org/uniprotkb/I3LGS4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLDFGSVTLPTQNEDEEYDKEDYEREKELQQLLTDLPHDMLDDDLSSPELHYSDCSEDGREEEPHHSEQLERNWNEHQVLPKSQSVNGYNEMRDIYIGEKTGNSWEENQNSIEDPHRGYHPEGGGDEGGSGYSPPSKYEETDLYHLPENFRPFTNGQKQEFRSQPTNVITFSDSQRNHFQQFGISQGPSCQALESYKVTYKPYQSSAQNNGSPAQDIAGSDTFEGLQQQFLGAKETDSAENMQIIQLQVLNKAKERQIDDLVEKFNESERQIRYLNHQLLIIKDEKDGLNLSLRESQKLFQNAKEREIQLEAQIKALETQIQALKANEEQMIKKSRTAEMALDSLKQQLLDLRHSESLQRVREQHESIVTGLTKKYDEQVLCLQRKLDATVTALKEQEDICCHLKDQVKQLERNQEATKLEKTEIINRLTRSLEESQKQCANLLHSGSVQEVAQLQLQLHQAHKAHVMSENMNKALQEELKELKDEISLYESAAKLGILPSDSEGELNIELTESYMDLGIKKANWKKSKVKSPVQQEDPGEELSKDEVIVKLKAEVQRLLGSNSVKRHLVCQLQSDLKDCQKKIEDLQVEKDEKSNEMKIDASEKPANQIWPGSLDVIVKDDLLRLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDRDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHALEKQQLFEAYEGTRLQLRSDLDKVNKEMAAVQECYLEVCREKDNLEAALRKTVEKEQEAQEKIKQELTQQFEKEWQSKLDQTIKAMKKKTSDYCSQTDQETTTDVISKKEMAVLIEEQKRKIQQNSEQEKDMAVKGALEKLEVELELKYCEKIAKQVETAVRNARHRWLEELPELAEYKSLVRAEQKKWEELQEQSVAKRISFAVSEAKETWKSEIAIMKKNAIPGKELEEKIHSLQRELELKNEEVPVVVRAELAKARSEWNKEKQEEIHRLQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQKTELLLQKETELHMCLDQSRREWTMQEAKRIQLEIQQYEEDILTVLEFLLRDTRKEQASGSENKPLLELLSTCSSKWVSVQYFEKLKDCIQKAFQDILSLLKESVDSDWGKITMTEISKDAATEVPGRGGPGALATLPTPASGQRAQSLPVRGAEADKKKILEIKDSCCGHCFQELEKAKQEGQDLKRKLEKCCRHLQHLERKHKAVVEKIGEENSKVVEELIEENNDMKNKLEELRTLCKTLPPRSLSEGAIENACIPCSGVALEELRGQYIKAVKKIKRDMLRYIQESKERAAEMVKVEVLRERQETARKMRKYYLICLQQILQDDGKEEGAEKKIMNAASKLAMVAKLLETPISHRSQSKTTESVWPLTSELLTGVEKSKRNYVNQNIPCHTESKSDNIKTLPKGMCDQVPKRRAVCNLRRRLEDTEHGDGKHEGSKESHSDFQFEDNSHKHVDVLPRNISPEFVPCEGEQGFGLHKKDLLSDTDSESLQQSAAHPFLGFCRYKTSPRYTPSLSESEFTHITFRSPNERLGLKVYKCNPLMESENAASEKSQSSGVKEAPVKDGGDLSDSVGWHSNSATLPCNSHEASFLHDRPQETLDLLAESVHFQQLSAASCLSDSEKKNMIRQPMKYESGHTPDLSEETIYSQPGKISMTLGHLPHQKANILKSDFKKLGSPVPSAVCQQPSRKLIAPLCSQQDSGFDSPFVNLD", "length": 1719, "header": "tr|F1SQG1-1|F1SQG1_PIG Isoform 1 of Centrosomal protein 152 OS=Sus scrofa OX=9823 GN=CEP152 PE=4 SV=4 CANONICAL=F1SQG1-1" }, "isoforms": [ { "isoform_ac": "A0A287AVF1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1/entry#A0A287AVF1-1", "sequence": { "sequence": "MSLDFGSVTLPTQNEDEEYDKEDYEREKELQQLLTDLPHDMLDDDLSSPELHYSDCSEDGREEEPHHSEQLERNWNEHQVLPKSQSVNGPSCQALESYKVTYKPYQSSAQNNGSPAQDIAGSDTFEGLQQQFLGAKENSAENMQIIQLQVLNKAKERQIDDLVEKFNESERQIRYLNHQLLIIKDEKDGLNLSLRESQKLFQNAKEREIQLEAQIKALETQIQALKANEEQMIKKSRTAEMALDSLKQQLLDLRHSESLQRVREQHESIVTGLTKKYDEQVLCLQRKLDATVTALKEQEDICCHLKDQVKQLERNQEATKLEKTEIINRLTRSLEESQKQCANLLHSGSVQEVAQLQLQLHQAHKAHVMSENMNKALQEELKELKDEISLYESAAKLGILPSDSEGELNIELTESYMDLGIKKANWKKSKVKSPVQQEDPGEELSKDEVIVKLKAEVQRLLGSNSVKRHLVCQLQSDLKDCQKKIEDLQVEKDEKSNEMKIDASEKPANQIWPGSLDVIVKDDLLRLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDRDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHALEKQQLFEAYEGTRLQLRSDLDKVNKEMAAVQECYLEVCREKDNLEAALRKTVEKEQEAQEKIKQELTQQFEKEWQSKLDQTIKAMKKKTSDYCSQTDQETTTDVISKKEMAVLIEEQKRKIQQNSEQEKDMAVKGALEKLEVELELKYCEKIAKQVETAVRNARHRWLEELPELAEYKSLVRAEQKKWEELQEQSVAKRISFAVSEAKETWKSEIAIMKKNAIPGKELEEKIHSLQRELELKNEEVPVVVRAELAKARSEWNKEKQEEIHRLQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQKTELLLQKETELHMCLDQSRREWTMQEAKRIQLEIQQYEEDILTVLEFLLRDTRKEQASGSENKPLLELLSTCSSKWVSVQYFEKLKDCIQKAFQDILSLLKESVDSDWGKITMTEISKDAATEVPGRGGPGPASGQRAQSLPVRGAEADKKKILEIKDSCCGHCFQELEKAKQEGQDLKRKLEKCCRHLQHLERKHKAVVEKIGEENSKVVEELIEENNDMKNKLEELRTLCKTLPPRSLSEGAIENACIPCSGVALEELRGQYIKAVKKIKRDMLRYIQESKERAAEMVKVEVLRERQETARKMRKYYLICLQQILQDDGKEEGAEKKIMNAASKLAMVAKLLETPISHRSQSKTTESGMPK", "length": 1271, "header": "tr|A0A287AVF1-1|F1SQG1_PIG Computationally mapped isoform of Centrosomal protein 152 OS=Sus scrofa OX=9823 GN=CEP152 PE=4 SV=3 CANONICAL=F1SQG1-1" }, "locus": { "chromosome": "1", "start_pos": 122975134, "end_pos": 122882115, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063098.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063098.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000047842.3", "url": "https://www.ensembl.org/id/ENSSSCP00000047842.3" } ] } }, { "isoform_ac": "F1SQG1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1/entry#F1SQG1-1", "sequence": { "sequence": "MSLDFGSVTLPTQNEDEEYDKEDYEREKELQQLLTDLPHDMLDDDLSSPELHYSDCSEDGREEEPHHSEQLERNWNEHQVLPKSQSVNGYNEMRDIYIGEKTGNSWEENQNSIEDPHRGYHPEGGGDEGGSGYSPPSKYEETDLYHLPENFRPFTNGQKQEFRSQPTNVITFSDSQRNHFQQFGISQGPSCQALESYKVTYKPYQSSAQNNGSPAQDIAGSDTFEGLQQQFLGAKETDSAENMQIIQLQVLNKAKERQIDDLVEKFNESERQIRYLNHQLLIIKDEKDGLNLSLRESQKLFQNAKEREIQLEAQIKALETQIQALKANEEQMIKKSRTAEMALDSLKQQLLDLRHSESLQRVREQHESIVTGLTKKYDEQVLCLQRKLDATVTALKEQEDICCHLKDQVKQLERNQEATKLEKTEIINRLTRSLEESQKQCANLLHSGSVQEVAQLQLQLHQAHKAHVMSENMNKALQEELKELKDEISLYESAAKLGILPSDSEGELNIELTESYMDLGIKKANWKKSKVKSPVQQEDPGEELSKDEVIVKLKAEVQRLLGSNSVKRHLVCQLQSDLKDCQKKIEDLQVEKDEKSNEMKIDASEKPANQIWPGSLDVIVKDDLLRLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDRDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHALEKQQLFEAYEGTRLQLRSDLDKVNKEMAAVQECYLEVCREKDNLEAALRKTVEKEQEAQEKIKQELTQQFEKEWQSKLDQTIKAMKKKTSDYCSQTDQETTTDVISKKEMAVLIEEQKRKIQQNSEQEKDMAVKGALEKLEVELELKYCEKIAKQVETAVRNARHRWLEELPELAEYKSLVRAEQKKWEELQEQSVAKRISFAVSEAKETWKSEIAIMKKNAIPGKELEEKIHSLQRELELKNEEVPVVVRAELAKARSEWNKEKQEEIHRLQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQKTELLLQKETELHMCLDQSRREWTMQEAKRIQLEIQQYEEDILTVLEFLLRDTRKEQASGSENKPLLELLSTCSSKWVSVQYFEKLKDCIQKAFQDILSLLKESVDSDWGKITMTEISKDAATEVPGRGGPGALATLPTPASGQRAQSLPVRGAEADKKKILEIKDSCCGHCFQELEKAKQEGQDLKRKLEKCCRHLQHLERKHKAVVEKIGEENSKVVEELIEENNDMKNKLEELRTLCKTLPPRSLSEGAIENACIPCSGVALEELRGQYIKAVKKIKRDMLRYIQESKERAAEMVKVEVLRERQETARKMRKYYLICLQQILQDDGKEEGAEKKIMNAASKLAMVAKLLETPISHRSQSKTTESVWPLTSELLTGVEKSKRNYVNQNIPCHTESKSDNIKTLPKGMCDQVPKRRAVCNLRRRLEDTEHGDGKHEGSKESHSDFQFEDNSHKHVDVLPRNISPEFVPCEGEQGFGLHKKDLLSDTDSESLQQSAAHPFLGFCRYKTSPRYTPSLSESEFTHITFRSPNERLGLKVYKCNPLMESENAASEKSQSSGVKEAPVKDGGDLSDSVGWHSNSATLPCNSHEASFLHDRPQETLDLLAESVHFQQLSAASCLSDSEKKNMIRQPMKYESGHTPDLSEETIYSQPGKISMTLGHLPHQKANILKSDFKKLGSPVPSAVCQQPSRKLIAPLCSQQDSGFDSPFVNLD", "length": 1719, "header": "tr|F1SQG1-1|F1SQG1_PIG Isoform 1 of Centrosomal protein 152 OS=Sus scrofa OX=9823 GN=CEP152 PE=4 SV=4 CANONICAL=F1SQG1-1" }, "locus": { "chromosome": "1", "start_pos": 122979531, "end_pos": 122882115, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005142.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005142.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005016.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005016.4" } ] } }, { "isoform_ac": "I3LGS4-1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1/entry#I3LGS4-1", "sequence": { "sequence": "MSLDFGSVTLPTQNEDEEYDKEDYEREKELQQLLTDLPHDMLDDDLSSPELHYSDCSEDGREEEPHHSEQLERNWNEHQVLPKSQSVNGYNEMRDIYIGEKTGNSWEENQNSIEDPHRGYHPEGGGDEGGSGYSPPSKYEETDLYHLPENFRPFTNGQKQEFRSQPTNVITFSDSQRNHFQQFGISQGPSCQALESYKVTYKPYQSSAQNNGSPAQDIAGSDTFEGLQQQFLGAKETDSAENMQIIQLQVLNKAKERQIDDLVEKFNESERQIRYLNHQLLIIKDEKDGLNLSLRESQKLFQNAKEREIQLEAQIKALETQIQALKANEEQMIKKSRTAEMALDSLKQQLLDLRHSESLQRVREQHESIVTGLTKKYDEQVLCLQRKLDATVTALKEQEDICCHLKDQVKQLERNQEATKLEKTEIINRLTRSLEESQKQCANLLHSGSVQEVAQLQLQLHQAHKAHVMSENMNKALQEELKELKDEISLYESAAKLGILPSDSEGELNIELTESYMDLGIKKANWKKSKVKSPVQQEDPGEELSKDEVIVKLKAEVQRLLGSNSVKRHLVCQLQSDLKDCQKKIEDLQVEKDEKSNEMKIDASEKPANQIWPGSLDVIVKDDLLRLKNEIQVLQQQNQELKETEEKLRNTNQDLCNQMRQMVQDFDRDKQEAVDRCERTYQQHHEAMKAQIRESLLAKHALEKQQLFEAYEGTRLQLRSDLDKVNKEMAAVQECYLEVCREKDNLEAALRKTVEKEQEAQEKIKQELTQQFEKEWQSKLDQTIKAMKKKTSDYCSQTDQETTTDVISKKEMAVLIEEQKRKIQQNSEQEKDMAVKGALEKLEVELELKYCEKIAKQVETAVRNARHRWLEELPELAEYKSLVRAEQKKWEELQEQSVAKRISFAVSEAKETWKSEIAIMKKNAIPGKELEEKIHSLQRELELKNEEVPVVVRAELAKARSEWNKEKQEEIHRLQEQNEQDYRQFLDDHRNKINEVLAAAKEDFMKQKTELLLQKETELHMCLDQSRREWTMQEAKRIQLEIQQYEEDILTVLEFLLRDTRKEQASGSENKPLLELLSTCSSKWVSVQYFEKLKDCIQKAFQDILSLLKESVDSDWGKITMTEISKDAATEVPGRGGPGALATLPTPASGQRAQSLPVRGAEAEENSKVVEELIEENNDMKNKLEELRTLCKTLPPRSLSEGAIENACIPCSGVALEELRGQYIKAVKKIKRDMLRYIQESKERAAEMVKVEVLRERQETARKMRKYYLICLQQILQDDGKEEGAEKKIMNAASKLAMVAKLLETPISHRSQSKTTESVWPLTSELLTGVEKSKRNYVNQNIPCHTESKSDNIKTLPKGMCDQVPKRRAVCNLRRRLEDTEHGDGKHEGSKESHSDFQFEDNSHKHVDVLPRNISPEFVPCEGEQGFGLHKKDLLSDTDSESLQQSAAHPFLGFCRYKTSPRYTPSLSESEFTHITFRSPNERLGLKVYKCNPLMESENAASEKSQSSGVKEAPVKDGGDLSDSVGWHSNSATLPCNSHEASFLHDRPQETLDLLAESVHFQQLSAASCLSDSEKKNMIRQPMKYESGHTPDLSEETIYSQPGKISMTLGHLPHQKANILKSDFKKLGSPVPSAVCQQPSRKLIAPLCSQQDSGFDSPFVNLD", "length": 1663, "header": "tr|I3LGS4-1|F1SQG1_PIG Computationally mapped isoform of Centrosomal protein 152 OS=Sus scrofa OX=9823 GN=CEP152 PE=4 SV=3 CANONICAL=F1SQG1-1" }, "locus": { "chromosome": "1", "start_pos": 122979531, "end_pos": 122882115, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029380.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029380.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023268.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023268.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1146, "start_aa": "Thr", "end_pos": 1146, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1146", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LGS4", "url": "https://www.uniprot.org/uniprotkb/I3LGS4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152345", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152345", "resource": "KEGG Pathway" }, { "id": "R-SSC-2565942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "resource": "Reactome", "description": "Regulation of PLK1 Activity at G2/M Transition" }, { "id": "R-SSC-380259", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "resource": "Reactome", "description": "Loss of Nlp from mitotic centrosomes" }, { "id": "R-SSC-380270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "resource": "Reactome", "description": "Recruitment of mitotic centrosome proteins and complexes" }, { "id": "R-SSC-380284", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "resource": "Reactome", "description": "Loss of proteins required for interphase microtubule organization from the centrosome" }, { "id": "R-SSC-380320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "resource": "Reactome", "description": "Recruitment of NuMA to mitotic centrosomes" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" }, { "id": "R-SSC-8854518", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "resource": "Reactome", "description": "AURKA Activation by TPX2" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "pmid": "" }, { "name": "pericentriolar material", "id": "GO:0000242", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000242", "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "pmid": "" }, { "name": "deuterosome", "id": "GO:0098536", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098536", "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "pmid": "" }, { "name": "procentriole", "id": "GO:0120098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120098", "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "pmid": "" }, { "name": "de novo centriole assembly involved in multi-ciliated epithelial cell differentiation", "id": "GO:0098535", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098535", "evidence": [ { "database": "UniProtKB", "id": "F1SQG1", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1469, "end_pos": 1471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 267, "end_pos": 269, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQG1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQG1" }, { "id": "PF25770", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25770" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CEP152 CEP63 binding coiled coil", "eco_id": "ECO_0000259", "start_pos": 1272, "end_pos": 1322, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1146 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1469, "end_pos": 1471 }, { "start_pos": 211, "end_pos": 213 }, { "start_pos": 267, "end_pos": 269 }, { "start_pos": 291, "end_pos": 293 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQL1-1", "uniprot_ac": "F1SQL1", "uniprot_id": "F1SQL1_PIG", "mass": { "chemical_mass": 94002.0, "monoisotopic_mass": 94002.0 }, "refseq": { "ac": "NP_001231604", "name": "serine/threonine-protein phosphatase 4 regulatory subunit 3B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231604" }, "gene_names": [ { "name": "PPP4R3B", "type": "recommended", "evidence": [ { "id": "F1SQL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ] }, { "name": "PPP4R3B", "type": "synonym", "evidence": [ { "id": "NP_001231604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231604" } ] }, { "name": "SMEK2", "type": "synonym", "evidence": [ { "id": "NP_001231604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231604" } ] } ], "protein_names": [ { "name": "Protein phosphatase 4 regulatory subunit 3B", "type": "synonym", "evidence": [ { "id": "F1SQL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQL1/entry#names_and_taxonomy" } ] }, { "name": "SMEK homolog 2, suppressor of mek1", "type": "synonym", "evidence": [ { "id": "NP_001231604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231604" } ] }, { "name": "serine/threonine-protein phosphatase 4 regulatory subunit 3B", "type": "synonym", "evidence": [ { "id": "NP_001231604", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231604" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPP4R3B", "url": "https://www.uniprot.org/uniprotkb/F1SQL1", "locus": { "chromosome": "3", "start_pos": 85711120, "end_pos": 85650068, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008398", "url": "https://www.ensembl.org/id/ENSSSCG00000008398" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008398", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008398", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512224", "url": "https://www.ncbi.nlm.nih.gov/gene/100512224", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512224", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512224", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YHRYMIS", "url": "https://omabrowser.org/oma/group/YHRYMIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQL1", "url": "https://www.orthodb.org/?gene=F1SQL1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23318:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23318:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04802", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04802", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22972", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22972", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231604", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231604", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287AXZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AXZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AXZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AXZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQL1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHMIDLPTCELNKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDRCEKDNVVGSNKNSTVCPDNYQTAQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKTLEEDEEMWFNEDEEEEGKPVVASVEKSKPEDDFPDSYEKFMETKKAKESEDKENLPKRTSSGGFKFTFSHSTSAANGTNSTNSKSVVAQSPPASSNGSSSKTTNLATTVTATKGSLVGLVDYPDDEEEDEEEETSPRKRPRLGS", "length": 820, "header": "tr|F1SQL1-1|F1SQL1_PIG Isoform 1 of Protein phosphatase 4 regulatory subunit 3B OS=Sus scrofa OX=9823 GN=PPP4R3B PE=3 SV=3 CANONICAL=F1SQL1-1" }, "isoforms": [ { "isoform_ac": "A0A287AXZ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1/entry#A0A287AXZ2-1", "sequence": { "sequence": "MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHMIDLPTCELNKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDRCEKDNVVGSNKNSTVCPGALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKTLEEDEEMWFNEDEEEEGKPVVASVEKSKPEDDFPDSYEKFMETKKAKESEDKENLPKRTSSGGFKFTFSHSTSAANGTNSTNSKSVVAQSPPASSNGSSSKTTNLATTVTATKGSLVGLVDYPDDEEEDEEEETSPRKRPRLGS", "length": 767, "header": "tr|A0A287AXZ2-1|F1SQL1_PIG Computationally mapped isoform of Protein phosphatase 4 regulatory subunit 3B OS=Sus scrofa OX=9823 GN=PPP4R3B PE=3 SV=2 CANONICAL=F1SQL1-1" }, "locus": { "chromosome": "3", "start_pos": 85708631, "end_pos": 85650419, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045674.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045674.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000048754.2", "url": "https://www.ensembl.org/id/ENSSSCP00000048754.2" } ] } }, { "isoform_ac": "F1SQL1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1/entry#F1SQL1-1", "sequence": { "sequence": "MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHMIDLPTCELNKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDRCEKDNVVGSNKNSTVCPDNYQTAQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKTLEEDEEMWFNEDEEEEGKPVVASVEKSKPEDDFPDSYEKFMETKKAKESEDKENLPKRTSSGGFKFTFSHSTSAANGTNSTNSKSVVAQSPPASSNGSSSKTTNLATTVTATKGSLVGLVDYPDDEEEDEEEETSPRKRPRLGS", "length": 820, "header": "tr|F1SQL1-1|F1SQL1_PIG Isoform 1 of Protein phosphatase 4 regulatory subunit 3B OS=Sus scrofa OX=9823 GN=PPP4R3B PE=3 SV=3 CANONICAL=F1SQL1-1" }, "locus": { "chromosome": "3", "start_pos": 85708631, "end_pos": 85650419, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009195.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009195.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008962.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008962.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 279, "start_aa": "Thr", "end_pos": 279, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr279", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AXZ2", "url": "https://www.uniprot.org/uniprotkb/A0A287AXZ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512224", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512224", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LM83-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3B", "gene_name": "PPP4R3B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSDTRRRVKVYTLNEDRQWDDRGTGHVSSIYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPTCELNKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDRREKDNVVGSNKSSTICPDNYQTAQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVVNALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDDEEEGKTVVAPVEKSKAEDDFPDSYEKFMETKKAKESEDKENLPKRTSSGGFKFTFSHSTSAANGANSTNSKSVVAQTPPASSNGSSSKTTNLATSVTATKGSLVGLVDYPDDEEEEEEEETSPRKRPRLGS", "length": 820 }, "evidence": [ { "id": "F1SQL1", "url": "https://omabrowser.org/oma/group/F1SQL1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZCR4-1", "protein_name": "Protein phosphatase 4, regulatory subunit 3B", "gene_name": "Ppp4r3b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEESVEDHIVEDQIGISPMRSDTDPRPALGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPTCELSKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHQLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDKCEKDNMLGSNKTNTICPDNYQTAQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDDDEEGKSVVTPVEKTKTEDDFPDSYEKFMETKKAKESEDKENLPKRTSSGGFKFTFSHSPSAANGTNSTNSKSVVAQTTPASSNGSSSKTTNLATSVTATKGSLVGLVDYPDDEEEDEEEESSPRKRPRLGS", "length": 803 }, "evidence": [ { "id": "F1SQL1", "url": "https://omabrowser.org/oma/group/F1SQL1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F4JC31-1", "protein_name": "Binding protein", "gene_name": "SMEK1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGAPEKSQSNTNSMQRVKVYHLNEDGKWDDRGTGHVSIDFVERSEELSLCVIDEEDNETLLVHPINPEDIYRKQEDTIISWRDPERSTELALSFQETAGCSYVWDQICTMQRNLHFSSLNSETFHSLNSELRELPAVELTTLPLILKIVTESGITDQMRLTELILKDHDFFRNLMGVFKICEDLENVDGLHMIFNIVKGIILLNSSQILEKIFGDELIMEIIGCLEYDPGVPHSQHHRNFLKEHVVFKERQSHVFFVRKEHAHYGCFGISAIPIKDPLVLSKIHQTYRIGYLKDVVLARVLDDAIVANLNSVIHANNAIVVSLLKDDSTFIQELFARLRSPSTSMESKKNLVYFLHEFCSLSKSLQVVQQLRLFRDLINEGIFHVIEEVLQIPDKKLVLTGTDILILFLTQDPNLLRSYVVRTEGNPLLGLLVKGMMEDFGDKMHCQFLEIIRTLLDANALSGGAQRANIMDIFYEKHLPELVDVITASCPEKSSNASEGAARRIFTKPEVLLNICELLCFCIMQDASRTKCSFLQNNVTEKVLHLTRRKEKYLVVAAIRFVRTLLSVHDDYVQNYVVKNNLLKPIIDVFIANGTRYNLLNSAVLDLLEHIRKGNATLLLKYIVDTFWDQLAPFQCLTSIQAFKVKYEQCLESAGPKSTSDAVDPRRRVDERALEKEEEDYFNEDSDEEDSASASNTQKEKPASNIQKEQPKPHLSNGVAASPTSSSPRSGGLVDYEDDEDDEDYKPPPRKQPEASEDEEGELLRLKRKSALVEREQEPSKKPRLGKSSKRENVFAVLCSTLSHAVLTGKKSPGPAGSAARSIVAKGAEDSKSSEENNSSSSDDENHKDDGVSSSEHETSDNGKLNGEESLVVAPKSSPEMAVNGS", "length": 886 }, "evidence": [ { "id": "F1SQL1", "url": "https://omabrowser.org/oma/group/F1SQL1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P40164-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3", "gene_name": "PSY2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSLPGTPTTSPTPMDEDTEQAVSVNTEPKRVKVYILENNEWKDTGTGFCIGEVDEGKFAYLVVSDEDSPTETLLKSKLEGNIEYQRQEETLIVWKDLGGKDIALSFEESMGCDTLCEFIVHVQRNIESNISLVTVKSSDNGLGSVHDIITGPVTLPSNDQQQNSQTLLEALKILNENTSFDFLKNETIEFILQSNYIDTLISHFHKAEEEKIPKDLFLLSNIIKTLILYNKRDILESMVEDDRIMGIVGILEYDTEYPTSKANHRKYLGSKGPNFKEVIPLENEDLKIIMKKCFRLQFLKDVVLVRFLDDHNFNLISEIVMDLETCIIDFLQVGTFLDRLIELYDTKTLPESSSEKEKFVQKRKDGIRLLQQCVQMSINLDAVDRSKFYKTLVRKGLFKVLDYAFHMETDSNVRILATDTIITIIEHDILLIHNVQNEDSFKRQHKSAPDDKSSHRKYPQDYSSSTDSKLLLILSTILLSDRSPGLREQVVQALNTLLHPEGCVGNGEGSYDLMGRSNYEAKNTSEDFPSFSYGLNSDSINLNNYHYSSDEMNNLEPESESEFQVMEYFANFYNKIAPILFGPLIKKDITTEMAEIDGQIEKVTKDDLLLIHLVKLVSFVCTEHDRVLSRRFILENGILDSVSKLIGGNHMMQLRLTAVRCIKNLMCLDDKYYHRYMISKNLYAPVFKLFQENIDKNNLANSCIQDFFRIIITECRAYQSDGHNRKEKTNGSYDGNGNDVKTNVNNNRTNFTILNKYLVQTYGDVLRKATDIPFIQDMLETGEENQPDHSSFENSIEGGNDISVNMSTDGFASNHLEDIDIKNVKRLHSEIEHFENDPHYSGDQLAFKKSVDQMNAST", "length": 858 }, "evidence": [ { "id": "F1SQL1", "url": "https://omabrowser.org/oma/group/F1SQL1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q5MIZ7-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3B", "gene_name": "PPP4R3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPTCELNKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDKCEKDFFLKHYRYSWSFICTPSHSHSHSTPSSSISQDNIVGSNKNNTICPDNYQTAQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDEEEEGKAVVAPVEKPKPEDDFPDNYEKFMETKKAKESEDKENLPKRTSPGGFKFTFSHSASAANGTNSKSVVAQIPPATSNGSSSKTTNLPTSVTATKGSLVGLVDYPDDEEEDEEEESSPRKRPRLGS", "length": 849 }, "evidence": [ { "id": "F1SQL1", "url": "https://omabrowser.org/oma/group/F1SQL1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q922R5-1", "protein_name": "Serine/threonine-protein phosphatase 4 regulatory subunit 3B", "gene_name": "Ppp4r3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEERFEEMPETSHLIDLPACELSKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHREFLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKVEIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLAKLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDVLLINVVIEQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLTNTSEDKCEKDNMLGSNTTNTICPDNYQTAQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQNQKLNSVPSILRSNRFRRDAKALEEDEEMWFNEDDDEEGKAVITPVEKSKTEDDFPDSYEKFMETKKAKESEDKENLPKRASSGGFKFTFSHSPSATNGTNSTNSKSVVSQTTPASSNVASSKTTSLATSVTATKGNLVGLVDYPDDEEEDEEEESSPRKRPRLGS", "length": 820 }, "evidence": [ { "id": "F1SQL1", "url": "https://omabrowser.org/oma/group/F1SQL1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" }, { "name": "protein phosphatase 4 complex", "id": "GO:0030289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030289", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein phosphatase regulator activity", "id": "GO:0019888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019888", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" }, { "name": "protein phosphatase activator activity", "id": "GO:0072542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072542", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" }, { "name": "regulation of double-strand break repair", "id": "GO:2000779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000779", "evidence": [ { "database": "UniProtKB", "id": "F1SQL1", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 481, "end_pos": 483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 498, "end_pos": 500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 593, "end_pos": 595, "annotation": "n_glycosylation_sequon" }, { "start_pos": 752, "end_pos": 754, "annotation": "n_glycosylation_sequon" }, { "start_pos": 755, "end_pos": 757, "annotation": "n_glycosylation_sequon" }, { "start_pos": 772, "end_pos": 774, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" }, { "id": "PF22972", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22972" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PP4R3 EVH1-like", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 103, "start_aa": "Arg", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQL1" }, { "id": "PF04802", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04802" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Serine/threonine-protein phosphatase 4 regulatory subunit 3-like central", "eco_id": "ECO_0000259", "start_pos": 144, "end_pos": 649, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 279 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 455, "end_pos": 457 }, { "start_pos": 481, "end_pos": 483 }, { "start_pos": 498, "end_pos": 500 }, { "start_pos": 593, "end_pos": 595 }, { "start_pos": 752, "end_pos": 754 }, { "start_pos": 755, "end_pos": 757 }, { "start_pos": 772, "end_pos": 774 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STL9-1", "uniprot_ac": "F1STL9", "uniprot_id": "F1STL9_PIG", "mass": { "chemical_mass": 284302.0, "monoisotopic_mass": 284302.0 }, "refseq": {}, "gene_names": [ { "name": "CEP295", "type": "recommended", "evidence": [ { "id": "F1STL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ] } ], "protein_names": [ { "name": "Centrosomal protein 295", "type": "synonym", "evidence": [ { "id": "F1STL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STL9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CEP295", "url": "https://www.uniprot.org/uniprotkb/F1STL9", "locus": { "chromosome": "9", "start_pos": 26155076, "end_pos": 26103283, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014946", "url": "https://www.ensembl.org/id/ENSSSCG00000014946" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014946", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014946", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR029299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060287", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060287", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RNMGEGH", "url": "https://omabrowser.org/oma/group/RNMGEGH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21553", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21553", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21553:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21553:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15309", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15309", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28375", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28375", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287AYE3", "url": "https://www.uniprot.org/uniprotkb/A0A287AYE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287AYE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287AYE3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STL9-1", "url": "https://www.uniprot.org/uniprotkb/F1STL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGGITNSENKELGKTIFGKFENMGEGHQQAKENEPDLNALAHRAAERKKKAEVRHREALKVQKNQKEMLMKQKTWHIKARKEALLVEKERSAKITSLPPPPPSLFENMEVTRQPNVKTNSSTYHHLRTFVNREVDTKQPDPHLAAEEEAKRLQELQKQAAEERMEQSEKAHVRGFQAMKKIHLAQNQEKLMKELKQLQQEDLARRRQTVARMPPHLVELPYKRNEMKEDWQRELEFAFEDMYNADRKVKGNLILHLEPEPLPVVTDQIQDEELDLSMEQGSSAETENIPVTKAETICSSEADVPVAMKTHQIPSKILFKKLLNKIRSQKSLWTIKSMSEEESEMITTVSETESKALTIETGATVSEDGTLSSGQEQVVESDMLTVDSGPLTSEDKPLTSNTDSEKEQEVNETRPITAVAQSSVLLHPHEEAARIRMAARQRQIMEIEEQKQKQLELLEKIEQQKLRLETDCFRAQLEEEKRKKTQQPGVGTVPASCTISSDEDNHRQMIRNYQQQLLQQNRIHKQSVETARKRLLEYQTMLKGKYPCVSAAPWIPGSVTSAPPQKAEPPAVASEHEDQAWRPTLSPNKHQPMQPVQISKLEPDFQVLRQHCFPRRQAETTETITSDVLAKQALESREQPKQLSQTETQQRDSKLVPEDSHTLTRAFAYDKPLILQEDKERAEIPKATTFQTLDSQPVFSESKERTASKVIEPSSFLPLVAEHSFSSLPTKVESGKIQEPFSTVSKNTVSVSHSVIGQMQDKSLQCLENITAQQGKLKALQEQLDLQKEVLRSRQEAQEQLLLCKQKELEGQTGLSIFLPLLPLDSFVSLPSTKAELGRFQESSPTKKETAASSGHPVVPQLQDGLNFKFPQERLNIQTDSLQGRREAQEVSCVHKQSELGGRVWAEQTESPSPPSQLTQHTFASLPSAGTQSGKILEQYSSKSEKECLSGPSEIPKSQDGSSSFLQQFLPLRDSLKLLQEQLTAQRDALQARHEAQAELLFHQQRDLGDTKSAQLSSSFPPMVAHHSVASQASARTEPRRVENFCFSEESVIPSSHPVIPTFQTESPSFAQLSLPQRENLTALQDQSHIQRVILGARQETQEFVHKESELEKNSFSEQTGPSISLSQGTESERFREFMSIKSDRAVPLSHWKIPRFQERHLGLSQHIQPRQDNLEGCQEWLDTEDEAHHFSQKTQGDVSSEHTGPSFLSQLGQLSLTLLPSAESLPTQELLSAESGSRIPSSHFQIPQLRDRLLKISQLIQPQQDNLRALQEQLATQREAIMQARQEAREELHVHKQSEWKGRLPPEQAGPSSSLSLVIQHPFAPLPLHEAGRIREPCSAKSDNTVSSSHSDRPRLLDRLLGLPQPVEPQQDHPATFQQEHLAAHTDSLPCSKKTQKELVLPRQYKFEEESSEPFIQPHHGDLKELQQQLDLQTKAAQSRQDLREELLLQRLSKLEKRVSSEQASASSSLSQVAVSVADSEKIQKAFLTGSDNTLPSSHPEIPGSQDRLLSLAQASLPWQDHVSAQLGLRREELHVNEKAQEELLLNKQTKLTEGESSEHTVPSLFPPMGKEHSFSPLPFAEVKPKNICEFYSAKNEHATSSSASMSPRLQDRFLSFSQPTLAQQDSLGLHKQLELQREVLHNSQKAQEELLVQRQIALQQQIQKHQETLKHFFKDSQTSKPTVENDFESQKHRECFPHLQDLAKDIQENIDPTVRSPCDNQLLSEDSNAKQSGEHLDRELGRRSSKPPVAKVKCGLDLNQHELSAIQEVESPASGRISILGKPEFHQDRDPLRVSISREQSFLGGPLDHGPFGHLHPVAQENICGDDSDKAVKVKEAVVENHAVFSHAVEEEERTYQSPNVKPDTKTDTQEIYHEPLSSITISTGSFLSYENTDLSLTDPESFSEHVDYRKQESPTDKEEETNMLSSVVPSTQVIYQRQDSQDIHKPLLPAVETFTSGQIHIQQMMDKYINEANLKTEKTDLRVDFDFPELEHTFPNLHRQLFKPLEPHPDFDFSSSFSGISQDSKDFYQKSDSPCESLRATPSPKSTAAFRALRRTSLHSSLNNSPNQQLDPNLPHAAAQSFAMENIEGSGQSFQQLVPECSSQEGSQHANLPSIFSIEARDSSQGMENQNYSSKQNEILQNKQKSVHFQLSVGNLQSSVFSSSGDAHVFHHLNLQHSTPCGSTSSECSIKDQLEGRIERLGFEELSQREADAMLRGQGFIKDDKNETCGVLNIDPHVEETDSQLCVRTAEMGTSIQTPYAVTVENEKCLKNSTKAGTPGTTGNLSQLAQSELFVSSGSFSLQSSVPVWETESGFGIMEEPELTMISTSDISTAEMGFADLTLEEKENEAKNCFQVSEFLPLPSERENSDHPAASEHSVKKLTTSTETLSKFTATPGSLQDAFIKRKKSFIERSSQRQKEIKNKIRVSVNSQTKIVKEKPTGSFVSHLKGVTKVRMSFPEDRKTAQTHMHQRALRLYHQLPEVKHQKEEKAKQDAYAQNRARAKEFHKKTLEKLRAKNTC", "length": 2522, "header": "tr|F1STL9-1|F1STL9_PIG Isoform 1 of Centrosomal protein 295 OS=Sus scrofa OX=9823 GN=CEP295 PE=4 SV=3 CANONICAL=F1STL9-1" }, "isoforms": [ { "isoform_ac": "A0A287AYE3-1", "url": "https://www.uniprot.org/uniprotkb/F1STL9/entry#A0A287AYE3-1", "sequence": { "sequence": "MGGITNSENKELGKTIFGKFENMGEGHQQAKENEPDLNALAHRAAERKKKAEVRHREALKVQKNQKEMLMKQKTWHIKARKEALLVEKERSAKITSLPPPPPSLFENMEVTRQPNVKTNSSTYHHLRTFVNREVDTKQPDPHLAAEEEAKRLQELQKQAAEERMEQSEKAHVRGFQAMKKIHLAQNQEKLMKELKQLQQEDLARRRQTVARMPPHLVELPYKRNEMKEDWQRELEFAFEDMYNADRKVKGNLILHLEPEPLPVVTDQIQDEELDLSMEQGSSAETENIPVTKAETICSSEADVPVAMKTHQIPSKILFKKLLNKIRSQKSLWTIKSMSEEESEMITTVSETESKALTIETGATVSEDGTLSSGQEQVVESDMLTVDSGPLTSEDKPLTSNTDSEKEQEVNETRPITAVAQSSVLLHPHEEAARIRMAARQRQIMEIEEQKQKQLELLEKIEQQKLRLETDCFRAQLEEEKRKKTQQPGVGTVPASCTISSDEDNHRQMIRNYQQQLLQQNRIHKQSVETARKRLLEYQTMLKGKYPCVSAAPWIPGSVTSAPPQKAEPPAVASEHEDQAWRPTLSPNKHQPMQPVQISKLEPDFQVLRQHCFPRRQAETTETITSDVLAKQALESREQPKQLSQTETQQRDSKLVPEDSHTLTRAFAYDKPLILQEDKERAEIPKATTFQTLDSQPVFSESKERTASKVIEPSSFLPLVAEHSFSSLPTKVESGKIQEPFSTVSKNTVSVSHSVIGQMQDKSLQCLENITAQQGKLKALQEQLDLQKEVLRSRQEAQEQLLLCKQKELEGQTGLSIFLPLLPLDSFVSLPSTKAELGRFQESSPTKKETAASSGHPVVPQLQDGLNFKFPQERLNIQTDSLQGRREAQEVSCVHKQSELGGRVWAEQTESPSPPSQLTQHTFASLPSAGTQSGKILEQYSSKSEKECLSGPSEIPKSQDGSSSFLQQFLPLRDSLKLLQEQLTAQRDALQARHEAQAELLFHQQRDLGDTKSAQLSSSFPPMVAHHSVASQASARTEPRRVENFCFSEESVIPSSHPVIPTFQTESPSFAQLSLPQRENLTALQDQSHIQRVILGARQETQEFVHKESELEKNSFSEQTGPSISLSQGTESERFREFMSIKSDRAVPLSHWKIPRFQERHLGLSQHIQPRQDNLEGCQEWLDTEDEAHHFSQKTQGDVSSEHTGPSFLSQLGQLSLTLLPSAESLPTQELLSAESGSRIPSSHFQIPQLRDRLLKISQLIQPQQDNLRALQEQLATQREAIMQARQEAREELHVHKQSEWKGRLPPEQAGPSSSLSLVIQHPFAPLPLHEAGRIREPCSAKSDNTVSSSHSDRPRLLDRLLGLPQPVEPQQDHPATFQQEHLAAHTDSLPCSKKTQKELVLPRQYKFEEESSEPFIQPHHGDLKELQQQLDLQTKAAQSRQDLREELLLQRLSKLEKRVSSEQASASSSLSQVAVSVADSEKIQKAFLTGSDNTLPSSHPEIPGSQDRLLSLAQASLPWQDHVSAQLGLRREELHVNEKAQEELLLNKQTKLTEGESSEHTVPSLFPPMGKEHSFSPLPFAEVKPKNICEFYSAKNEHATSSSASMSPRLQDRFLSFSQPTLAQQDSLGLHKQLELQREVLHNSQKAQEELLVQRQIALQQQIQKHQETLKHFFKDSQTSKPTVENDFESQKHRECFPHLQDLAKDIQENIDPTVRSPCDNQLLSEDSNAKQSGEHLDRELGRRSSKPPVAKVKCGLDLNQHELSAIQEVESPASGRISILVKVKEAVVENHAVFSHAVEEEERTYQSPNVKPDTKTDTQEIYHEPLSSITISTGSFLSYENTDLSLTDPESFSEHVDYRKQESPTDKEEETNMLSSVVPSTQVIYQRQDSQDIHKPLLPAVETFTSGQIHIQQMMDKYINEANLKTEKTDLRVDFDFPELEHTFPNLHRQLFKPLEPHPDFDFSSSFSGISQDSKDFYQKSDSPCESLRATPSPKSTAAFRALRRTSLHSSLNNSPNQQLDPNLPHAAAQSFAMENIEGSGQSFQQLVPECSSQEGSQHANLPSIFSIEARDSSQGMENQNYSSKQNEILQNKQKSVHFQLSVGNLQSSVFSSSGDAHVFHHLNLQHSTPCGSTSSECSIKDQLEGRIERLGFEELSQREADAMLRGQGFIKDDKNETCGVLNIDPHVEETDSQLCVRTAEMGTSIQTPYAVTVENEKCLKNSTKAGTPGTTGNLSQLAQSELFVSSGSFSLQSSVPVWETESGFGIMEEPELTMISTSDISTAEMGFADLTLEEKENEAKNCFQVSEFLPLPSERENSDHPAASEHSVKKLTTSTETLSKFTATPGSLQDAFIKRKKSFIERSSQRQKEIKNKIRVSVNSQTKIVKEKPTGSFVSHLKGVTKVRMSFPEDRKTAQTHMHQRALRLYHQLPEVKHQKEEKAKQDAYAQNRARAKEFHKKTLEKLRAKNTC", "length": 2471, "header": "tr|A0A287AYE3-1|F1STL9_PIG Computationally mapped isoform of Centrosomal protein 295 OS=Sus scrofa OX=9823 GN=CEP295 PE=4 SV=2 CANONICAL=F1STL9-1" }, "locus": { "chromosome": "9", "start_pos": 26154982, "end_pos": 26109999, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000065668.3", "url": "https://www.ensembl.org/id/ENSSSCT00000065668.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049175.2", "url": "https://www.ensembl.org/id/ENSSSCP00000049175.2" } ] } }, { "isoform_ac": "F1STL9-1", "url": "https://www.uniprot.org/uniprotkb/F1STL9/entry#F1STL9-1", "sequence": { "sequence": "MGGITNSENKELGKTIFGKFENMGEGHQQAKENEPDLNALAHRAAERKKKAEVRHREALKVQKNQKEMLMKQKTWHIKARKEALLVEKERSAKITSLPPPPPSLFENMEVTRQPNVKTNSSTYHHLRTFVNREVDTKQPDPHLAAEEEAKRLQELQKQAAEERMEQSEKAHVRGFQAMKKIHLAQNQEKLMKELKQLQQEDLARRRQTVARMPPHLVELPYKRNEMKEDWQRELEFAFEDMYNADRKVKGNLILHLEPEPLPVVTDQIQDEELDLSMEQGSSAETENIPVTKAETICSSEADVPVAMKTHQIPSKILFKKLLNKIRSQKSLWTIKSMSEEESEMITTVSETESKALTIETGATVSEDGTLSSGQEQVVESDMLTVDSGPLTSEDKPLTSNTDSEKEQEVNETRPITAVAQSSVLLHPHEEAARIRMAARQRQIMEIEEQKQKQLELLEKIEQQKLRLETDCFRAQLEEEKRKKTQQPGVGTVPASCTISSDEDNHRQMIRNYQQQLLQQNRIHKQSVETARKRLLEYQTMLKGKYPCVSAAPWIPGSVTSAPPQKAEPPAVASEHEDQAWRPTLSPNKHQPMQPVQISKLEPDFQVLRQHCFPRRQAETTETITSDVLAKQALESREQPKQLSQTETQQRDSKLVPEDSHTLTRAFAYDKPLILQEDKERAEIPKATTFQTLDSQPVFSESKERTASKVIEPSSFLPLVAEHSFSSLPTKVESGKIQEPFSTVSKNTVSVSHSVIGQMQDKSLQCLENITAQQGKLKALQEQLDLQKEVLRSRQEAQEQLLLCKQKELEGQTGLSIFLPLLPLDSFVSLPSTKAELGRFQESSPTKKETAASSGHPVVPQLQDGLNFKFPQERLNIQTDSLQGRREAQEVSCVHKQSELGGRVWAEQTESPSPPSQLTQHTFASLPSAGTQSGKILEQYSSKSEKECLSGPSEIPKSQDGSSSFLQQFLPLRDSLKLLQEQLTAQRDALQARHEAQAELLFHQQRDLGDTKSAQLSSSFPPMVAHHSVASQASARTEPRRVENFCFSEESVIPSSHPVIPTFQTESPSFAQLSLPQRENLTALQDQSHIQRVILGARQETQEFVHKESELEKNSFSEQTGPSISLSQGTESERFREFMSIKSDRAVPLSHWKIPRFQERHLGLSQHIQPRQDNLEGCQEWLDTEDEAHHFSQKTQGDVSSEHTGPSFLSQLGQLSLTLLPSAESLPTQELLSAESGSRIPSSHFQIPQLRDRLLKISQLIQPQQDNLRALQEQLATQREAIMQARQEAREELHVHKQSEWKGRLPPEQAGPSSSLSLVIQHPFAPLPLHEAGRIREPCSAKSDNTVSSSHSDRPRLLDRLLGLPQPVEPQQDHPATFQQEHLAAHTDSLPCSKKTQKELVLPRQYKFEEESSEPFIQPHHGDLKELQQQLDLQTKAAQSRQDLREELLLQRLSKLEKRVSSEQASASSSLSQVAVSVADSEKIQKAFLTGSDNTLPSSHPEIPGSQDRLLSLAQASLPWQDHVSAQLGLRREELHVNEKAQEELLLNKQTKLTEGESSEHTVPSLFPPMGKEHSFSPLPFAEVKPKNICEFYSAKNEHATSSSASMSPRLQDRFLSFSQPTLAQQDSLGLHKQLELQREVLHNSQKAQEELLVQRQIALQQQIQKHQETLKHFFKDSQTSKPTVENDFESQKHRECFPHLQDLAKDIQENIDPTVRSPCDNQLLSEDSNAKQSGEHLDRELGRRSSKPPVAKVKCGLDLNQHELSAIQEVESPASGRISILGKPEFHQDRDPLRVSISREQSFLGGPLDHGPFGHLHPVAQENICGDDSDKAVKVKEAVVENHAVFSHAVEEEERTYQSPNVKPDTKTDTQEIYHEPLSSITISTGSFLSYENTDLSLTDPESFSEHVDYRKQESPTDKEEETNMLSSVVPSTQVIYQRQDSQDIHKPLLPAVETFTSGQIHIQQMMDKYINEANLKTEKTDLRVDFDFPELEHTFPNLHRQLFKPLEPHPDFDFSSSFSGISQDSKDFYQKSDSPCESLRATPSPKSTAAFRALRRTSLHSSLNNSPNQQLDPNLPHAAAQSFAMENIEGSGQSFQQLVPECSSQEGSQHANLPSIFSIEARDSSQGMENQNYSSKQNEILQNKQKSVHFQLSVGNLQSSVFSSSGDAHVFHHLNLQHSTPCGSTSSECSIKDQLEGRIERLGFEELSQREADAMLRGQGFIKDDKNETCGVLNIDPHVEETDSQLCVRTAEMGTSIQTPYAVTVENEKCLKNSTKAGTPGTTGNLSQLAQSELFVSSGSFSLQSSVPVWETESGFGIMEEPELTMISTSDISTAEMGFADLTLEEKENEAKNCFQVSEFLPLPSERENSDHPAASEHSVKKLTTSTETLSKFTATPGSLQDAFIKRKKSFIERSSQRQKEIKNKIRVSVNSQTKIVKEKPTGSFVSHLKGVTKVRMSFPEDRKTAQTHMHQRALRLYHQLPEVKHQKEEKAKQDAYAQNRARAKEFHKKTLEKLRAKNTC", "length": 2522, "header": "tr|F1STL9-1|F1STL9_PIG Isoform 1 of Centrosomal protein 295 OS=Sus scrofa OX=9823 GN=CEP295 PE=4 SV=3 CANONICAL=F1STL9-1" }, "locus": { "chromosome": "9", "start_pos": 26154982, "end_pos": 26109999, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016304.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016304.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015867.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015867.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2043, "start_aa": "Thr", "end_pos": 2043, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2043", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2397, "start_aa": "Thr", "end_pos": 2397, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2397", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287AYE3", "url": "https://www.uniprot.org/uniprotkb/A0A287AYE3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FTM8-1", "protein_name": "Centrosomal protein of 295 kDa isoform X1", "gene_name": "Cep295", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVTRTWRWSSRRGPNGCWVAGRLWTPVCREVQLHTLPDPLNLKYTEMKRKVMNTGKLRLSPNEEAFILKEDYERRRKLRLLQVREQEKGIAFQKREDIKQRKSQQFSRLAEELKAEWEKAQIQKIQNLEKLYLASLRHMGEGHRQAKENEPDLDALAQRTAERKRKAEMRHKEALKVQKNQKEMLMKQKTRHIKTRKEALLVEKERSAKVARLPPPVPAPFENIEINRIPSLKTNSCTYHHISTFVNRQMGTKQPDAHLAAEEEARRLEGLRKQAAQERREQLERAHARGSQAMKKIHLTQTQERLLEELKQLQKEDLARRRQTVAQMPPQLVELPYRRGEVKEDWHRELEFAFEDMYNADRKVKGNLILHLKPEPFPAMSDQLRDEELDLSMELENRGEKKNSQVPDTEIIHSSGRVPFGRKTQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDESEITTTISEVESKAPTMESGAMVLEEGTLSSEQEQVMDSDRLTIESEPLSSEDKPFFCQGDAGKEQAVVAFPPITDVAQSSVLLHPQEEAVRIRVSARHKQIMEIEKQKKKQLELLEQIEQQKLRLETDCFRAEMEEEEERKKTQQFEVCPAPVSHTLISGEDSHRQMIRNYQHQLLQQNRLNKQSVETARKRLLEYQTVLKERYPSMSSISLIPDSIISGPPQKSQKPAAASEHWDLCQRLKLSPNKYQPVQSSQIPELDQSHIQALRQGHFPQRQGETGASEILTKQSVGSQEHLQKFSHVEAHQRDYEFVPKYSHALSRTVSYDRPQTLQDAGEVSKPLTTITYQTLESQQISSEDSEAISSKPTESSSFLPLVPERSFTTLPVQLESGKVQEPFTTISKSRVSINQSVISQMHDQPLSSSDTITAQQDNLKFLQKHLELQKEALQARQEAQEKLAFCTQKELKKQAGLPVFIPSSDGDLFTSLPSETGKIQTFSTESDATVSSGNMDKLWGFSQPVLSQQTNLEFPQEQMSVQKDNLQARREAQEVLLAHKQSKLDDIVHSEQARHSWPHQVAQQSFSPLIVTDRLFRKIQEQPLPTNKKGLLPSQSEISRSQDGSSSSLQQILPLHNSLKLLQERLATQRDAIQTRDEAQEESLLHKERSFGDRMSEPVNSLSSVVPQHSDASCAVSEPGPKKSWELHSFEENIVPSSHLITPALEEESLGFPQHNLPRQEHFITPQEQAHIQRVILGARKETMEYAHKENELEKGLSSQQTGTLSSSSQVAEWERCQEFLSVKSDNTGPLSLKIPGFRERLVRFSQHTFPLQNNLQEHQEWVNTEKESFQLSPQTQENSSSQQTGFSSFIPSLGPSSCVSLPSADSGTTTESNSKVKSIHLQMPELQDRLLKISQLIQPQQDSLKTLQKQLAVQREAIIQSRQEAHEQTLREWKKTVFPKQPSSSSPLTPQHSLASFPLSDSERTQELCSTISDDAVSSGSEMLGLPDRALGLSHTALFQQNNLAAHPEHLHAQTTSFHSTEKPQEEMVFPRPCELFIQPYHGDLKTLKQQLDVQRKALRSGQEVQEELLLQRLTKLEQRVSSSSFSPQVALPVANSEGTQQSFPTQSDDTQIPNSRGEYLSFSQPLLSQQDKLAMQMDLEMVFHKELLLHKQNSQNKSDSLEHATPALFLSKETEHPFIPLPFAEAKSKSICDLYLPKKEHEAPSSDAGIPRLQDRLLNYSQSVLTQQDNMSLQKQLNLQREALHFRQRAQEELLVQRQTALQQQIEKHRETVKDFLNVSQARMSTGENDLKMQGPAWGNSDQESSTGESLGKELSGRASKPPVSKVKCGLDLNQHELSTIQEVESPASGRTSMPGKSDFYQDRDPLRVSVSREQSFLGSPLARDPFGCHQPPAQNSSSHDYDEAVEVEESDVEDHAILSHAVSEACTSLGPIVKPDDKAETQEISQEPLSSVTVSTGSLSYEITDLSLTDPESFSDQTDHQEQQSTRKQEETSFSCVIPSTPVTYQQLHSLGANESLLPMEEERASDHTHAQQIIDKDINKANLIPEKRDLQVPAVDLDFPELEHVFPHLHRQLFKPLEPYLDFDLSLSSGISQDNRDFYEQSSESPSRKHHVKAFPVSTASFTELKASLQPAGNPAQSFAAEGSEQSFQQLLPEFSSQESQHADLPSIYSIEARGTSQSMENSSYSEQTETLQSKKKSVHFQSSTENLSSVYNSSDQPQLPHSIPCGSTSSECSVKPLGSRKEMLGFEELSRKVVTGSQSQRLAEDENVEETNSVQGSHSLSIENEKSVQDIIKTETTKVVRQLSQLPQAQHIMNSKSFSFQSSIPVWETESGYGIMEEPDLTLSTSDISTTETDLANLTLEEKDSEAQSSFQAGASLPPLPETSGYEAVSPQVAPLATLMKRKKAFVERSYQRQREMRNKTQQLPQTGSSLSCLKGVSLPEDRKTTQALMHQRALKLYKQLSEVKQQRRESKALCKIS", "length": 2456 }, "evidence": [ { "id": "F1STL9", "url": "https://omabrowser.org/oma/group/F1STL9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A4L9P8-1", "protein_name": "Centrosomal protein of 295 kDa", "gene_name": "Cep295", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKRKVMNGKLRLSPNEEAFILKEDYERRRKLRLLQVREQERGIAFQIREDIKQRRNQQVSHLAEELRAEWEEAQSQKIQNLEKLYLASLRHMGDGHQQAKENEPDLDALSRRAAERKTKAEARHKEALKAQKKQKEMLMKQKTRHIKARKEAVLVEKERSAKMARLPPPVPSPFENIDINRIPSLKTNRSTYHHISAFVSRQMGTKQPDAHLAAEEEARRVERLRKQAAQERMEQSERAHARGSQAMKKIHLAQNQERLMEELKQLQREDLACKRQTAAQMPSQLLELPYRRSEMKEDWQRELEFAFEDVYSADRKVKGNLILHLKPEPLPTMSDQLQDEELDLSMEQENEVPLATKTQQIPSRILLKRLLNKIRNQKSLWTIKSFSEDDNQVTASIISEIERKVPSTDSGTITTGETAVSFEQEQVMGSDRLMIESGPPSSEDKPLCYKSVTGKEQAMGVSPPATTVAQSSVLLHPQEEAARLRMSARHKQIMEIEEQKQKQLELLEQIEQQKLRLETDCFQAQLEETRKQADHLEVRPAPVSHAMISDEERHRQMIRNYQYQLLQQNRLHKQTVETARKRLLEYQTVLKERCPSMSARSLIPDSVVSEPPQQAQKPAVASDYWDPSQRPKLSPSKYQPVQPSQIPALDQNHIQVPRQGHIPQRQGETARAKQSVESQERQWQFSQVETQQRDYEFIFKDSHSLSRTSSYVRPQTLQAAGEVSKPLRAIICQTSDSQQISSEDSENISSKPTEPSSSLPLMPECSSSSLSVKLESETIQKAFTTVNRSVISQMHGQPLSSSETGTTQQGDIRFLQGQLELQKKVLQERQEAQEKLLSCTQKELEEQTGIPVFFPSPVGNMFSSLPSASAESGNIQTSSTKSDATVSSDSMDNPYSQPISLRQTNLEFLQEQFSVEKDNLQARREAQEVSFTHTQSKLDKIVRSEQTGSSWPQLVALESFSSLTSADTQSRKIQKPPLPTNKKGLLPSQSEILSSQDGSSGFLQQTLPLQNTLKLLQEQLTIQRGMIQPRLNAQETLLLHKERCSVDSKAGPVNSLSSAVAQHSEAGPQSLQELYSSKKENTVLSSHLITPEVQEESHGSPQHSLPRQEHFASLQEQAHIQRVILGARKQIQEFAHKQNEFKKGLYSQQTGALSSPSQGTGWEISQESLSVRSDSTDPLSHFKIPGFQERLVRALQPTFPLRDNLQEHQEWVDPEKESFQFSPQTQENRSSQQTGFSSFTPSLRQPSCVSLPSVDSGITQHPLSTERDSKVTSSHLQIPELQHRLLKISQLIQPQQDSLKALQEQLATSRTIIHSRQEALEETLREWKEKIFPEQVGPFSPLMTQHSFASFPVSDIERAQELCSTNSEGAISSGYSEMLELPDRALGLSCTALPQQGNLTVHPGHLHAQTNSFHSTEKAQEKLVFPRPCKLEEISAEHSIQPPHDDLQALQQQLDVHREAIRSCQDIQEELLLQRLNKLEQRVSSKQISSSPLLSQVALPIANSEGTLQSSPAKNDDTEMLRSHSEYLNFSQPLQDNVTEQLDLEVVFHKELLLHKQKSQTKSESPEHAAPFNDAVIPRLQDRLLSYFQPALTQQDSMSPQKQLNLQREALYSRQKAQEELLVQRQTALQQQVQKHRETLKGFSNVSQTRAASGENDLEMQKTEQLTGWFPHIQGWPWGDSSQGSSSGDQPGAAAVHAEHSGESLGKELSGRASKPPVSKVKCVFDLNQHELSTIQEVESPTSGRTSMPGKAEFYRDRDPLRVSVSREQSYLGSPVAHDPFGCHQPSVQENSKSHDTAKAVKVKKSDIEDHALLSHAISEEEEEEEACTNLSPLMKPDDEVETQEISQELLSSMTVSTGSFLSYEITDLSLTDPESFSEQTEHQEQESSSKEEETGSLSCAVPSTQVTYQQQHSLGAHNSLLPTEEENASDQTHVHQIIDKDINEANLIPDKRDFQVPAVDLDFPELEHLFPHLHRQLFKPLEPHLDLDLSSPGTSQEDRDFYQQNSESSSEKHVKALSTSTLCFTALTAGSHSPNSRLNQQLDVNLAHATTEGSEQSFQQLLPEFSSQESQHTDLPSIYSIEARGTSQSMENQNYSEILQNKKKSIYFQPSTENLSPACSSSDTTLFDQLHPQHSTPCGSVSSEGSVKQLEGREEMLGFEELSRRAVPMSQRLTEDENVVLPINPYVGTVEMETSIQGSNSLSIQNEKPIQNVIKTETTKAVRNVCQLAQEEHMLKSESCPFRRPIPVWETETGYGIMEEPDLTLLSTSDISITDTDLANLTIEDNEAQCSQAGAVQPSSSVETTFCGAASEPWADQPTVASSAIPGSLGEAFMKRKKTFMERSYQRQREIWNKTPLPQAKVSKEKLSTSSSLSHLKEAVSGDETAKRNRSQCI", "length": 2395 }, "evidence": [ { "id": "F1STL9", "url": "https://omabrowser.org/oma/group/F1STL9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BQ48-1", "protein_name": "Centrosomal protein of 295 kDa", "gene_name": "Cep295", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRKGMNTKLRLSPSEEAFILKEDYERRRKLRLLQVREQERGIAFQIREGIKQRRSQQVSHLAEELRAKWEEAQSQKIQNLEKLYLASLRHMGDGHRQAKENEPDLDALSRRAAERKRKAEVRHKEALKVQKNQKEMLMKQKTRHIKARKEAVLVEKQRSAKMARLPPPVPSPFENIDVNRIPSLKTNSSTYHHISTFVSRQMGTKQPDAHLAAEEEARRVERLRKQAAQERVKQFERAHVRGSQAMKKIHLAQNQERLMEELKQLQKEDLARRRQTVAQMPPQMLELPYRRSEMKEDRQRELEFAFEDMYNADRKVKGNLILHLKPEPLPTISDQLQDEELDLSMEQENQVPLAAKIQQIPSRILFKRLLNKIRSQKSLWTIKSVSEDEGEVTSSIIEIESKVPSVDSGAIITEERTAASFEQEQVTDSDRLTIESGPLSSEDKPLYYKAGTGREQAMAVSPPATAVAQSSVLLHPQEEAVRIRMSLRRKQIMEIEEQKQKQLELLEQIEQQKLRLETDCFRAQLEEQRKQADQPEVCCAPMSHAMISDEDSHRQMIRNYQHQLLQQNRLHKETVETARKRLLEYQTVLKERSPSLSASALVPDSVVSGPPQQSYKPAAASDSWDPSQRLKLSPSKYQPVQPSQIPALEQSHIQVPRHGHITQRQGKMAVSEMLGKQPVESQERQWQFSQVETHQGDYEFVLKDSHSLSRTLSYVRPQTLQDAREVSKPPRVIICQSLDSQQISSEDSENISSKPSEPSPFLPLVPERPFTSLPVKFHSGTIHKPFTTINQSVISQMHDQPLSSSETITAQQGDLRFLQEQLELQKKVLQARQEAREKLLLCTQKELGQQTGLPVFLPSPAGNIFSSLPSASAESGNFQTSSTKSDATVSSDNMDRLWDSSQPISSQQTHLEFLQEQSSVETDNLQARREAQEVLFAHTQNTLEKIVRSEQAGSSLPHQVAQQSFSSLTLADTQSKKIQKQPLPANKKGLLPSQSEVSKAQDGSSGFLQQTLPLQNTLKLLQEQLTRQRSMIPPRRDGQETLLLYKESCSEDSEAGPVESLSSVVVQHADASRAVSEVPKRLQDVYSSEEENRVLSSHLITHGFPQHSLQRQEHFTPLQEETHIQRLILGARKNNEEFAPKQNELEKGLCSQQTDALSSPSQVTDWGTSRGSVSVRSDRTDPLRHFKIPAFRERLVRVSQHTFPLQDNLQEHQEWVDTEKESFQSSPLTPENPSSQQTGFSSFKASLRLPSCVSLPSADSGITQHPLSTESDSKVKSSHLQIPELQHRLSKISQLIPPQQDSLKALQEQLATQREAIIHSRQEAHEETLREWKEKIFPEQVGPFSPLIPQHSLASFPVSDTERAQELCSTNSDTISSGYPEMLELPDRTLGLSHTALPQQNNLTAHPEHLHAQTNFFHSTEKAQEGLVFPRPCQFEEMSAEHFIQPQHDDLKALQQQLDMQREAIRSGQEMQEKMLLQRLNKLEQRISSKQISSSLFSSQVALPIANSDGTLQSFPTKSNETELLGSQDEYLSFSQPRLPLQNNMTEQLDLEKVFHKELLLHKQKSQNKSESSEHSLPPLFLSKEIEHPFISLPFAESKSKSICELYLSDKKHAAPNDAVIPRLQDRLLSCSQPVLTQQDNMSLQKQLNLQRETLHSRQKAQEELLVQRQTSLQQQIQRHRETLKNFFNVSQARNPTDENDLEMQKREQLGGWFPHTQGLTWGDAGQGSANGEQPRADVHAEHNGESLAKELSGRASKPPVSKVKCVLDLNQHELSTIQEVESPASGRISMPGKAEFYQDRDPLRVSVSREQSFLESPLAHDPFGCHQPPAQENSKSHDDNAEAVKVKKSDVEDHAVLSHAVSKEEACTNLGPLGKPDDEAETQEISQEPLSSVTVSTGSFLSYEITDLSLTDPESFSEQTEHLEQESTNKQEETDPLSIAVPSVIYQQQHSLGAHNSLLPMEEESTSDHTHVQQIMDNDVNEANLIPDKRDFQVPAVDLDFRELEHIFPHLHRQLFKPLEPHLDFDLSSPGTSQEDSDFYQSSESSSEKHVKALSTGTICFPALTAKSHSPNPRLNQLDINLAHATTEGSEQSFQQLRPEFSSQESQHADLPSIYSIEARGPSQRMENQNYSEMLQNKKKSLSLQPSTEDLTPACSSSDTALFDQLHLQHSTPCASVSSECSVKLLESREEVLGFEELSRRAVTMSQRLTEDENVVLPINPHVGRVEKEASVQGSNPLSIQNEKPIQNFIETDTTEAVGNVCQLAQAEHILKSCPFRSPIPIWETDTGYGIMEEPDLTLVSNSDISITETDLANLTLEDREDNEAQFFQAGVVLPTSSMETSVCGAVSEPYVDQPTVAPSATSGSLQEAFMTRQTLTERSYQRQREIWNKTRLPQTKVSKEKLPTGCTGS", "length": 2412 }, "evidence": [ { "id": "F1STL9", "url": "https://omabrowser.org/oma/group/F1STL9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C0D2-1", "protein_name": "Centrosomal protein of 295 kDa", "gene_name": "CEP295", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKRKVVNTHKLRLSPNEEAFILKEDYERRRKLRLLQVREQERDIALQIREDIKQRRNQQFTRLAEELRAEWEESQTQKIQNLEKLYLASLRSMGEGHRQAKENEPDLDALAQRAAERKRKADLRHKEALKVQKNQKEILLKQKTWHIKARKEALLVEKERSAKITSLPPPPPTLFENIEVKRISAVKTNSSTYHHLHTFVNRETDTKRPDARLAAEEEAKRLEELQKQAAQERMERFEKAHVRGFQAMKKIHLAQNQEKLMKELKQLQQEDLARRRQTVAQMPPQLVELPYKRSEMKEDWQRELEFAFEDMYNADRKVKGNLILHLEPEPLPTVTNQIQDEELDLSMEQENLGAAEDLPVTEAEICSSETDVPLVMKTQQIPSKVLFKKLLNKIRSQKSLWTIKSMSEDESEMITTVSEIESKAPTVESGTIASKERTLSSGQEQVVESDTLTIESGPLASEDKPLSCGTNSGKEQEINETLPITTVAQSSVLLHPQEAAARIRMSARQKQIMEIEEQKQKQLELLEQIEQQKLRLETDCFRAQLEEEKRKKTQPTGVGIAPASCPVISDEDSHRQMIRNYQHQLLQQNRLHRQSVETARKQLLEYQTMLKGRCPSVSAPSLITDSVISVPSWKSERPTAISEHWDQGQRLKLSPNKYQPIQPIQTSKLEQDHFQVARQNHFPQRQVETTETLRASDILTNQALESQEHLRQFSQTETQQRDYKLVPKDSETLSRALSHDRQLISQDARKISETFGATTFQSLESQQLFSENSENISYHLTEPSSFVPLVPQHSFSSLPVKVESGKIQEPFSAMSKSTVSTSHSIISQMHDRPLLPSENITAQQGNMKALQEQLDLQKKVLQATQEAQEQLLLCKQKEVEQQTGLSVFLPLVTPDSSALLPSAKADLGRIQESSPTKNNIAVSSDHHVISQLQDKRLSLSQPILSQQNNFKFLQEQLNIQKDSLQARREAQEVLYVHKQSELDRRVCSEQAEPSFPFQVAQHTFTSLPSADTKSGKIQEQHSSKSEKGLVSCQSDIPISQDGSLSFLQQFLPLHDSLKLLQEQLTKQRDTLQARHEAQVELLLHRQRDLGDSKSGLVSSSSSPVVVQHSVASQASAKAEPRRIQELYLSEKENVGPSCHLIIPTFQDKSLSFPQHSLAQQENLTILQEQSQIQRVILGAKEGTQEFVHTESELEKRISSEQTGTSSSLSQVDESERFQECISIKSDSTIPLSHPKIPRCQERLLRVSQHMLPLQDNLEEHQAWLDTEKEAFHFSQKTQENTSSEQTGSSSFIPQLVQLSFTSLASAESGTILEPLFTESESKIFSSHLQIPQLQDRLLRISQLIQPQQDNLKALQEQLATQREAIILARQEAREELLLHQSEWEGRISPEQVDTSSLPLVPQHSFASLPLNESERNQEPCSINSDNIVSSGHSEIPTLPDGLLGLSHLVLPQQDNLIALEEHLHAQTDFLPSIEKTQKELVLSKPCKFEEKVSSEHFIQSHHGDLQALQQQLDTQKKAIRSIQEVQEELLLQRLSELEKRVSSEQVCSSSFVSQVPVADSERTQKSFPTKSNDTLPSSHREIPRLQDRLLSLSKPILPQQDNMTAQLDAQREVMYSYEKPQEELSLNKQRKLNKSESAEHTIPSLFLPKETEHSFIPLPFAEAKPKSTCELYSSQNEHAAPPSNPVIPGFQDRLLSFSQSVLTQQDNLGLQKQLDLQREVLHYSQKAQEKLLVQRQTALQQQIQKHEETLKDFFKDSQISKPTVENDLKTQKMGQLRDWFPNTQDLAGNDQENIRHADRNNSDDNHLASEDTSAKQSGEHLEKDLGRRSSKPPVAKVKCGLDLNQHELSAIQEVESPAIGRTSILGKPGIYEDRDPLRVSISREQSFFGSPLAHDPFSCLQLVGQENVCGDDYDEAVKLKESVVENHAVLSYAVEEEHAYLGPTVKPDDKAKTLSYEPLSSATVSTGSLLSYENTDLSLTDPESFSEHMDDSKQESTTSKEEETNIISSIVPSTQDIYQRQNSSDVHKSLLPAVDETTCGHTHFQQMIDKYINEANLIPEKTDLQELEHIFPNLHHQLFKPLEPHPDFDLSSSSSGISPDNRDFYQRSDSSSESHCATGLSKSTVYFTALRRTSMHSSLNTSPNQQPDTNLAHVGAHSFATENIIGGSEQCFEQLQPEYSSQEESQHADLPSIFSIEARDSSQGMKNQNYPSEEHTEILQNKKKIVHFQLSIGNLSSVYSSSDEANVFDQLNVQHSTPCGSNSSECSTKHQLESRKESMGFEELSKRGVVTMLQSQGLIEDNKNETCRVLDINPQVEETDSRLCVRTVEMGTSIQAPYSLTTQNEKYFENSAETDIPKITKKLSQLGESELFASSGSFSLQSSIPVWETETGHGIMEEPELTLISTTDTSIAEMDFANLTLEEKSENEAKCFFQVSEFLPLVSATEASDYPAVSELSIEKPRTASTETPRRLTPVPGSLQEAFIKRKKSFMERSHQRQKEIRNKIHVSENSQIKTVKEKPSISSSVSRLKGVNKVRASFPEDRKTTQALRHQRGLRLYNQLAEVKQQKEEKTKQEAYAQNRARAKEFHKKTLEKLRAKNTC", "length": 2601 }, "evidence": [ { "id": "F1STL9", "url": "https://omabrowser.org/oma/group/F1STL9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" }, { "name": "mitotic spindle microtubule", "id": "GO:1990498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990498", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of establishment of protein localization", "id": "GO:1904951", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904951", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" }, { "name": "regulation of centriole replication", "id": "GO:0046599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046599", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" }, { "name": "positive regulation of centriole elongation", "id": "GO:1903724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903724", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" }, { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" }, { "name": "positive regulation of centrosome duplication", "id": "GO:0010825", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010825", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "F1STL9", "url": "https://www.uniprot.org/uniprotkb/F1STL9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1079, "end_pos": 1081, "annotation": "n_glycosylation_sequon" }, { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2065, "end_pos": 2067, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2133, "end_pos": 2135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2228, "end_pos": 2230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2274, "end_pos": 2276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2286, "end_pos": 2288, "annotation": "n_glycosylation_sequon" }, { "start_pos": 410, "end_pos": 412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 768, "end_pos": 770, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STL9" }, { "id": "PF15309", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15309" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ALMS motif", "eco_id": "ECO_0000259", "start_pos": 2400, "end_pos": 2517, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1STL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STL9" }, { "id": "PF28375", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28375" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Centrosomal protein of 295 kDa-like", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 541, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 2043, 2397 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1079, "end_pos": 1081 }, { "start_pos": 119, "end_pos": 121 }, { "start_pos": 2065, "end_pos": 2067 }, { "start_pos": 2133, "end_pos": 2135 }, { "start_pos": 2228, "end_pos": 2230 }, { "start_pos": 2274, "end_pos": 2276 }, { "start_pos": 2286, "end_pos": 2288 }, { "start_pos": 410, "end_pos": 412 }, { "start_pos": 768, "end_pos": 770 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5T1-1", "uniprot_ac": "I3L5T1", "uniprot_id": "I3L5T1_PIG", "mass": { "chemical_mass": 49087.0, "monoisotopic_mass": 49087.0 }, "refseq": { "ac": "XP_003353549", "name": "sphingosine-1-phosphate phosphatase 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353549" }, "gene_names": [ { "name": "SGPP1", "type": "recommended", "evidence": [ { "id": "I3L5T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" } ] }, { "name": "SGPP1", "type": "synonym", "evidence": [ { "id": "XP_003353549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353549" } ] } ], "protein_names": [ { "name": "Sphingosine-1-phosphate phosphatase 1", "type": "synonym", "evidence": [ { "id": "I3L5T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5T1/entry#names_and_taxonomy" } ] }, { "name": "sphingosine-1-phosphate phosphatase 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003353549", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353549" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5T1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SGPP1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1", "locus": { "chromosome": "1", "start_pos": 194380907, "end_pos": 194352001, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028558", "url": "https://www.ensembl.org/id/ENSSSCG00000028558" } ] } } ], "crossref": [ { "id": "I3L5T1", "url": "https://alphafold.ebi.ac.uk/entry/I3L5T1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028558", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028558", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03388", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03388", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100626032", "url": "https://www.ncbi.nlm.nih.gov/gene/100626032", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000326", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000326", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626032", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626032", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GRWEYPY", "url": "https://omabrowser.org/oma/group/GRWEYPY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L5T1", "url": "https://www.orthodb.org/?gene=I3L5T1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14969", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14969", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14969:SF45", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14969:SF45", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01569", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01569", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9845614", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9845614", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003353549", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353549", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "27514", "url": "https://www.rhea-db.org/rhea/27514", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "27518", "url": "https://www.rhea-db.org/rhea/27518", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B0L1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B0L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0L1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5T1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5T1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSWRQRLAGLVGSLQDPQKVARFQLLCGVEAPAAAAATSGPEEDEKAEAPLAGEPRHRERQLGASGGPQPPGSERNQCQAKPGVGGAPNGVRNGRATKLGPASPRRAGALRRNSLTGEEGQLAHVSNWPLYYLFCLGTELGNELFYMLFFPFWIWNLDALVGRRLVVIWVLAMYLGQCTKDIIRWPRPASPPVVKLEVFYNSEYSMPSTHAMSGTAIPISMVLLTYGRWQYPLIYGLILIPCWCSLVCLSRIYMGMHSILDVIAGFLYTILILAIFYPFVDLIDNFNQTHKYAPLIIIGLHLALGIFSFTLDTWSTSRGDTAEILGSGAGIACGSHFTYKMGLTLDPPLDILPLARPPISVTLLGKAILRILIGMVFVLVVRDIMKRITIPLACKIFNIPCDDVRKARQHMEVELPYRYITYGMVGFSITFLVPYLFFFIGIS", "length": 443, "header": "tr|I3L5T1-1|I3L5T1_PIG Isoform 1 of Sphingosine-1-phosphate phosphatase 1 OS=Sus scrofa OX=9823 GN=SGPP1 PE=3 SV=2 CANONICAL=I3L5T1-1" }, "isoforms": [ { "isoform_ac": "A0A287B0L1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1/entry#A0A287B0L1-1", "sequence": { "sequence": "MSWRQRLAGLVGSLQDPQKVARFQLLCGVEAPAAAAATSGPEEDEKAEAPLAGEPRHRERQLGASGGPQPPGSERNQCQAKPGVGGAPNGVRNGRATKLGPASPRRAGALRRNSLTGEEGQLAHVSNWPLYYLFCLGTELGNELFYMLFFPFWIWNLDALVGRRLVVIWVLAMYLGQCTKDIIRWPRPASPPVVKLEVFYNSEYSMPSTHAMSGTAIPISMVLLTYGRWQDVIAGFLYTILILAIFYPFVDLIDNFNQTHKYAPLIIIGLHLALGIFSFTLDTWSTSRGDTAEILGSGAGIACGSHFTYKMGLTLDPPLDILPLARPPISVTLLGKAILRILIGMVFVLVVRDIMKRITIPLACKIFNIPCDDVRKARQHMEVELPYRYITYGMVGFSITFLVPYLFFFIGIS", "length": 413, "header": "tr|A0A287B0L1-1|I3L5T1_PIG Computationally mapped isoform of Sphingosine-1-phosphate phosphatase 1 OS=Sus scrofa OX=9823 GN=SGPP1 PE=3 SV=1 CANONICAL=I3L5T1-1" }, "locus": { "chromosome": "1", "start_pos": 194379023, "end_pos": 194352190, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039849.3", "url": "https://www.ensembl.org/id/ENSSSCT00000039849.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000049759.1", "url": "https://www.ensembl.org/id/ENSSSCP00000049759.1" } ] } }, { "isoform_ac": "I3L5T1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1/entry#I3L5T1-1", "sequence": { "sequence": "MSWRQRLAGLVGSLQDPQKVARFQLLCGVEAPAAAAATSGPEEDEKAEAPLAGEPRHRERQLGASGGPQPPGSERNQCQAKPGVGGAPNGVRNGRATKLGPASPRRAGALRRNSLTGEEGQLAHVSNWPLYYLFCLGTELGNELFYMLFFPFWIWNLDALVGRRLVVIWVLAMYLGQCTKDIIRWPRPASPPVVKLEVFYNSEYSMPSTHAMSGTAIPISMVLLTYGRWQYPLIYGLILIPCWCSLVCLSRIYMGMHSILDVIAGFLYTILILAIFYPFVDLIDNFNQTHKYAPLIIIGLHLALGIFSFTLDTWSTSRGDTAEILGSGAGIACGSHFTYKMGLTLDPPLDILPLARPPISVTLLGKAILRILIGMVFVLVVRDIMKRITIPLACKIFNIPCDDVRKARQHMEVELPYRYITYGMVGFSITFLVPYLFFFIGIS", "length": 443, "header": "tr|I3L5T1-1|I3L5T1_PIG Isoform 1 of Sphingosine-1-phosphate phosphatase 1 OS=Sus scrofa OX=9823 GN=SGPP1 PE=3 SV=2 CANONICAL=I3L5T1-1" }, "locus": { "chromosome": "1", "start_pos": 194379023, "end_pos": 194352190, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023144.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023144.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019381.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019381.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B0L1", "url": "https://www.uniprot.org/uniprotkb/A0A287B0L1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626032", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626032", "resource": "KEGG Pathway" }, { "id": "R-SSC-9845614", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9845614", "resource": "Reactome", "description": "Sphingolipid catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "P47013-1", "protein_name": "Dihydrosphingosine 1-phosphate phosphatase LCB3", "gene_name": "LCB3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVDGLNTSNIRKRARTLSNPNDFQEPNYLLDPGNHPSDHFRTRMSKFRFNIREKLLVFTNNQSFTLSRWQKKYRSAFNDLYFTYTSLMGSHTFYVLCLPMPVWFGYFETTKDMVYILGYSIYLSGFFKDYWCLPRPRAPPLHRITLSEYTTKEYGAPSSHTANATGVSLLFLYNIWRMQESSVMVQLLLSCVVLFYYMTLVFGRIYCGMHGILDLVSGGLIGIVCFIVRMYFKYRFPGLRIEEHWWFPLFSVGWGLLLLFKHVKPVDECPCFQDSVAFMGVVSGIECCDWLGKVFGVTLVYNLEPNCGWRLTLARLLVGLPCVVIWKYVISKPMIYTLLIKVFHLKDDRNVAARKRLEATHKEGASKYECPLYIGEPKIDILGRFIIYAGVPFTVVMCSPVLFSLLNIA", "length": 409 }, "evidence": [ { "id": "I3L5T1", "url": "https://omabrowser.org/oma/group/I3L5T1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q55A00-1", "protein_name": "Probable sphingosine-1-phosphate phosphatase", "gene_name": "sppA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKIKKQNNIGSYSSDKDGEYKKFRFSKTSIRGFLLKEYEREVPIIVKIQSYRNKFLDFYFKMASILGEEVFFILALPISTWCVATQLGVELCVVLALTIGGGNILKNTFTLPRPPPNIVWTNTAHQKDHGLPSTHTASAFGLTFYFLIYTYFLFPTIGESFNISLLSMFFIVLFWSTSVMFSRLYNGHHTPMDVIAGLIVAITSILATTYQLRYFIEGMVLSETFLFGPMLYIAILSAILFFHPQANTGPTPAYPETGLVCGASLGSLISLWLHAQHPCPLMNQELLLLEANYDSIVSTIHSIPLLLHGSRILIGLVLVGIAKVFSKKFFFFAYDLVIRANTNNEQSQPITTVSFDPNKKIIVTPTIEAFSKLFVYTCVSFTIVSMPYLFYYLNIQTSADVTRYY", "length": 406 }, "evidence": [ { "id": "I3L5T1", "url": "https://omabrowser.org/oma/group/I3L5T1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q99P55-1", "protein_name": "Sphingosine-1-phosphate phosphatase 1", "gene_name": "Sgpp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLGQRLALLAIRLQEPQRVASFQRLCGVEVPLGSPKAGEDAETEVRGAPGDPRRRPRQSGADGSPAKPDCCGAPNGVRNGLAAEPGPTGPRRAGSLRRNSLTGEEGELAKVSNLPLYYLFCFGTELGNELFYIIFFPFWIWNLDPFVGRRLVIIWVLVMYLGQCTKDIIRWPRPASPPVIKLEIFYNSEYSMPSTHAMSGTAIPIAMILLTYGRWQYPLIYGLILIPCWSSLVCLSRIYMGMHSILDVIAGFLYTILILIIFYPLVDLIDNFNQTYKYAPLIIIGLHLILGIFSFTLDTWSTSRGDTAEILGSGAGIACGSHAAYNLGISLDPSLHTLPLAIPPLTVTLFGKAILRVVIGMLLVLFVRDIMKKVTIPLACKLFGIPCHDLRQARQHMEVELPYRYITYGTVGFSITFLIPYIFSFIGIS", "length": 430 }, "evidence": [ { "id": "I3L5T1", "url": "https://omabrowser.org/oma/group/I3L5T1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BX95-1", "protein_name": "Sphingosine-1-phosphate phosphatase 1", "gene_name": "SGPP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLRQRLAQLVGRLQDPQKVARFQRLCGVEAPPRRSADRREDEKAEAPLAGDPRLRGRQPGAPGGPQPPGSDRNQCPAKPDGGGAPNGVRNGLAAELGPASPRRAGALRRNSLTGEEGQLARVSNWPLYCLFCFGTELGNELFYILFFPFWIWNLDPLVGRRLVVIWVLVMYLGQCTKDIIRWPRPASPPVVKLEVFYNSEYSMPSTHAMSGTAIPISMVLLTYGRWQYPLIYGLILIPCWCSLVCLSRIYMGMHSILDIIAGFLYTILILAVFYPFVDLIDNFNQTHKYAPFIIIGLHLALGIFSFTLDTWSTSRGDTAEILGSGAGIACGSHVTYNMGLVLDPSLDTLPLAGPPITVTLFGKAILRILIGMVFVLIIRDVMKKITIPLACKIFNIPCDDIRKARQHMEVELPYRYITYGMVGFSITFFVPYIFFFIGIS", "length": 441 }, "evidence": [ { "id": "I3L5T1", "url": "https://omabrowser.org/oma/group/I3L5T1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JI99-1", "protein_name": "Sphingosine-1-phosphate phosphatase 1", "gene_name": "Sgpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLGQRLALLASRLQEPQRVASFQRLCGVEVPLSSPAADEDAETEVRGAPGEPRRRGRQPGAEDSPAKADCCGAPNGVRNGLAAEPGPTGPRRAGSQRRNSLTGEEGELVKVSNLPLYYLFCLGTELGNELFYILFFPFWIWNLDPFVGRRLVIIWVLVMYLGQCTKDIIRWPRPASPPVIKLEVFYNSEYSMPSTHAMSGTAIPIAMFLLTYGRWQYPLIYGLILIPCWSSLVCLSRIYMGMHSILDVIAGFLYTILILIIFYPLVDLIDNFNQTYKYAPLIIIGLHLILGIFSFTLDTWSTSRGDTAEILGSGAGIACGSHAAYTLGLSLEPSLHMLPLAIPPLTVTLFGKAILRIVLGMLLVLFVRDIMKKITIPLACKLSSIPCHDIRQARQHMEVELPYRYITYGMVGFSITFLVPYVFSFIGIS", "length": 430 }, "evidence": [ { "id": "I3L5T1", "url": "https://omabrowser.org/oma/group/I3L5T1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9M2G7-1", "protein_name": "Lipid phosphate phosphatase delta", "gene_name": "LPPD", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKKILERSMEGSGTWQGLVLVGIVTWICASSYLKFTHKFRSLLQPWVARQVVGGVPLILRIQKCQNGVLDAFFSGLSCVVSVPFYTAFLPLLFWSGHGRLARQMTLLIAFCDYLGNCIKDVVSAPRPSCPPVRRITATKDEEDNAMEYGLPSSHTLNTVCLSGYLLHYVLSSLEYESVSIQYYGFALACLLVALIAFGRVYLGMHSVVDIVSGLAIGVLILGLWLTVNEKLDDFITSKQNVSSFWTALSFLLLFAYPTPEHPTPSYEYHTAFNGVTLGIVTGVQQTYSQFHHEAAPRIFSPELPISSYLGRVMVGIPTILLVKFCSKSLAKWTLPMVSNALGIPIRSSMYIPKLKGYASGKKTDEPKNSVGYLQKLCEFLSHDSFDIDTGIRFFQYAGLAWSVVDLVPSLFSYVNL", "length": 416 }, "evidence": [ { "id": "I3L5T1", "url": "https://omabrowser.org/oma/group/I3L5T1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "sphingosine metabolic process", "id": "GO:0006670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006670", "evidence": [ { "database": "UniProtKB", "id": "I3L5T1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" } ], "pmid": "" }, { "name": "regulation of keratinocyte differentiation", "id": "GO:0045616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045616", "evidence": [ { "database": "UniProtKB", "id": "I3L5T1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" } ], "pmid": "" }, { "name": "ER to Golgi ceramide transport", "id": "GO:0035621", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035621", "evidence": [ { "database": "UniProtKB", "id": "I3L5T1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" } ], "pmid": "" }, { "name": "phospholipid dephosphorylation", "id": "GO:0046839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046839", "evidence": [ { "database": "UniProtKB", "id": "I3L5T1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "I3L5T1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "I3L5T1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "sphingosine-1-phosphate phosphatase activity", "id": "GO:0042392", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042392", "evidence": [ { "database": "UniProtKB", "id": "I3L5T1", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 287, "end_pos": 289, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "27514", "name": "", "equation": "sphinganine 1-phosphate + H2O = sphinganine + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "27514", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/27514" } ] }, { "id": "27518", "name": "", "equation": "sphing-4-enine 1-phosphate + H2O = sphing-4-enine + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "27518", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/27518" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5T1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 443, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5T1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5T1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5T1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5T1" }, { "id": "SM00014", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00014" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphatidic acid phosphatase type 2/haloperoxidase", "eco_id": "ECO_0000259", "start_pos": 161, "end_pos": 277, "start_aa": "Val", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 287, "end_pos": 289 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSM7-1", "uniprot_ac": "F1SSM7", "uniprot_id": "F1SSM7_PIG", "mass": { "chemical_mass": 70211.0, "monoisotopic_mass": 70211.0 }, "refseq": {}, "gene_names": [ { "name": "NUB1", "type": "recommended", "evidence": [ { "id": "F1SSM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ] } ], "protein_names": [ { "name": "NEDD8 ultimate buster 1", "type": "recommended", "evidence": [ { "id": "F1SSM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM7/entry#names_and_taxonomy" } ] }, { "name": "Negative regulator of ubiquitin-like proteins 1", "type": "synonym", "evidence": [ { "id": "F1SSM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NUB1", "url": "https://www.uniprot.org/uniprotkb/F1SSM7", "locus": { "chromosome": "18", "start_pos": 5899568, "end_pos": 5928884, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016438", "url": "https://www.ensembl.org/id/ENSSSCG00000016438" } ] } } ], "crossref": [ { "id": "F1SSM7", "url": "https://alphafold.ebi.ac.uk/entry/F1SSM7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016438", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016438", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14291", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14291", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17062", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17062", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR009060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015940", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015940", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041207", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041207", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12948", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12948", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12948:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12948:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00627", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00627", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26285", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26285", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287B3P5", "url": "https://www.uniprot.org/uniprotkb/A0A287B3P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B3P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B3P5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQKKYLQAKLTQFLREDRIQLWKPPYTDENKEVGLALKHLAKKYSDKLECCENEVEKIIEEIRCKAIARGTGNEHYKTTGIATIEVFLPARFKKDRKNSLETRLHISGRELRSKIAETFGFQENYIKIVINKKQLQLEETLAEQGVTHNVKAMVLELKQSEEDARKNSQVEEEEQNEAKQKEKRIQRTKRGLEILAERAAEMVVDPETTPYLDIANQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPFLLDADKYFCKCCTELLDTVDNYAVLQLDIVWCYFRLEQLECLDDAEKKLSLAQTCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIRNYHSGRGEEARDYLNKARQLFKELYIDPSKVHSLMQLGFTAQEARLGLRACDGNVDHAAAHITNRREELAQIRKEEKEKKRRRLENVNCLKGMGYSAHAARQALHQAAGNLEEALKILISNPQLWWLNDSDPETNSHQESPSQENIDQLVYMGFDALAAEAALRLFRGNLQLAAQTLAHNGGGLPPDLQLAAEDCSSSTPSTSPSDSAGTSSASTDEDMETEAVNEILEDIPEHEEDYLDSTLEDEEIIIAEYLSYVENIKAAAKQN", "length": 616, "header": "tr|F1SSM7-1|F1SSM7_PIG Isoform 1 of NEDD8 ultimate buster 1 OS=Sus scrofa OX=9823 GN=NUB1 PE=1 SV=4 CANONICAL=F1SSM7-1" }, "isoforms": [ { "isoform_ac": "A0A287B3P5-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM7/entry#A0A287B3P5-1", "sequence": { "sequence": "MAQKKYLQAKLTQFLREDRIQLWKPPYTDENKEVGLALKHLAKKYSDKLECCENEVEKIIEEIRCKAIARGTGNEHYKTTGIATIEVFLPARFKKDRKNSLETRLHISGRELRSKIAETFGFQENYIKIVINKKQLQLEETLAEQGVTHNVKAMVLELKQSEEDARKNSQVEEEEQNEAKQKEKRIQRTKRGLEILAERAEMVVDPETTPYLDIANQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPFLLDADKYFCKCCTELLDTVDNYAVLQLDIVWCYFRLEQLECLDDAEKKLSLAQTCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIRNYHSGRGEEARDYLNKARQLFKELYIDPSKVHSLMQLGFTAQEARLGLRACDGNVDHAAAHITNRREELAQIRKEEKEKKRRRLENVNCLKGMGYSAHAARQALHQAAGNLEEALKVTPRRPFPPAPPPRACLPGSQGPSSLLVDPVVEPDAQDLCTGRRSWRRGSSCTTGFAVA", "length": 523, "header": "tr|A0A287B3P5-1|F1SSM7_PIG Computationally mapped isoform of NEDD8 ultimate buster 1 OS=Sus scrofa OX=9823 GN=NUB1 PE=1 SV=1 CANONICAL=F1SSM7-1" }, "locus": { "chromosome": "18", "start_pos": 5925894, "end_pos": 5902767, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000058907.1", "url": "https://www.ensembl.org/id/ENSSSCT00000058907.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050744.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050744.1" } ] } }, { "isoform_ac": "F1SSM7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSM7/entry#F1SSM7-1", "sequence": { "sequence": "MAQKKYLQAKLTQFLREDRIQLWKPPYTDENKEVGLALKHLAKKYSDKLECCENEVEKIIEEIRCKAIARGTGNEHYKTTGIATIEVFLPARFKKDRKNSLETRLHISGRELRSKIAETFGFQENYIKIVINKKQLQLEETLAEQGVTHNVKAMVLELKQSEEDARKNSQVEEEEQNEAKQKEKRIQRTKRGLEILAERAAEMVVDPETTPYLDIANQTGRSIRIPPSERKALMLAMGYHEKGRAFLKRKEYGIALPFLLDADKYFCKCCTELLDTVDNYAVLQLDIVWCYFRLEQLECLDDAEKKLSLAQTCFKNCYGENHQRLVHIKGNCGKEKVLFLRLYLLQGIRNYHSGRGEEARDYLNKARQLFKELYIDPSKVHSLMQLGFTAQEARLGLRACDGNVDHAAAHITNRREELAQIRKEEKEKKRRRLENVNCLKGMGYSAHAARQALHQAAGNLEEALKILISNPQLWWLNDSDPETNSHQESPSQENIDQLVYMGFDALAAEAALRLFRGNLQLAAQTLAHNGGGLPPDLQLAAEDCSSSTPSTSPSDSAGTSSASTDEDMETEAVNEILEDIPEHEEDYLDSTLEDEEIIIAEYLSYVENIKAAAKQN", "length": 616, "header": "tr|F1SSM7-1|F1SSM7_PIG Isoform 1 of NEDD8 ultimate buster 1 OS=Sus scrofa OX=9823 GN=NUB1 PE=1 SV=4 CANONICAL=F1SSM7-1" }, "locus": { "chromosome": "18", "start_pos": 5925894, "end_pos": 5900660, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017899.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017899.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017418.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017418.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 548, "start_aa": "Thr", "end_pos": 548, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr548", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B3P5", "url": "https://www.uniprot.org/uniprotkb/A0A287B3P5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" }, { "name": "Lewy body", "id": "GO:0097413", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097413", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "proteolysis involved in protein catabolic process", "id": "GO:0051603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051603", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" }, { "name": "response to tumor necrosis factor", "id": "GO:0034612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034612", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" }, { "name": "positive regulation of proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0032436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032436", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process", "id": "GO:0006511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006511", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" }, { "name": "response to type II interferon", "id": "GO:0034341", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034341", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" }, { "name": "regulation of ubiquitin-dependent protein catabolic process", "id": "GO:2000058", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000058", "evidence": [ { "database": "UniProtKB", "id": "F1SSM7", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSM7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 616, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSM7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSM7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSM7" }, { "id": "PS50030", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50030" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBA", "eco_id": "ECO_0000259", "start_pos": 374, "end_pos": 414, "start_aa": "Tyr", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 548 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 217, "end_pos": 219 }, { "start_pos": 477, "end_pos": 479 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SU27-1", "uniprot_ac": "F1SU27", "uniprot_id": "F1SU27_PIG", "mass": { "chemical_mass": 195059.0, "monoisotopic_mass": 195059.0 }, "refseq": { "ac": "XP_003124901", "name": "GRIP and coiled-coil domain-containing protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124901" }, "gene_names": [ { "name": "GCC2", "type": "recommended", "evidence": [ { "id": "F1SU27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ] }, { "name": "GCC2", "type": "synonym", "evidence": [ { "id": "XP_003124901", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124901" } ] } ], "protein_names": [ { "name": "GRIP and coiled-coil domain containing 2", "type": "synonym", "evidence": [ { "id": "F1SU27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU27/entry#names_and_taxonomy" } ] }, { "name": "GRIP and coiled-coil domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "XP_003124901", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124901" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GCC2", "url": "https://www.uniprot.org/uniprotkb/F1SU27", "locus": { "chromosome": "3", "start_pos": 47718254, "end_pos": 47758999, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008138", "url": "https://www.ensembl.org/id/ENSSSCG00000008138" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008138", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008138", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512405", "url": "https://www.ncbi.nlm.nih.gov/gene/100512405", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512405", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512405", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SU27", "url": "https://www.orthodb.org/?gene=F1SU27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18902", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18902", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18902:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18902:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811440", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003124901", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124901", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B5U7", "url": "https://www.uniprot.org/uniprotkb/A0A287B5U7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B5U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B5U7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9Q7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCH5", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QCH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QCH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R887", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R887", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R887-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R887-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU27-1", "url": "https://www.uniprot.org/uniprotkb/F1SU27-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDPAHDGVASPATPGTGRYKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKSGGTDNITKALTERLDAILLEKAETEQQCVSLKKENIKMKQEVEDSVTKLEDMHKEFEQSQRNYMKEMENLKNELMAVHSKHSNDKAGWQKELEEAAKKQLELSKQLKFHNDSEEIVKKLQEEIQKIKPAFEEQILYLQQQLEAATNEKEQEITHLQGVIEANSQQYQKDINSLQEELLRLKSTHQEEVKELMCQIEASAIEHEAEVNNLNQLKENLVRQCEGEEKNIQQKYECELENLGKTSNANQENQMCSLLLKENTLVEQGENEKVKHLEDALKELESQHTILKDELTYMNNLKLKLEIDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKCELEDSDKQFRCIVEQHNKEVKSLKEQHQKEISELNEAFLSGSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVNELQQKLRTAFNEKDALLETVNRLQTENEKLLSQQEFVPELENTIKTLQEKNEEYLVSLSQRDTMAQELEAKISHLIEEKDDLISKMKSSHEEMNDLHKKCERENKLIVELREKVEQTTRYNSELEQKVNELTAGLEETLKEKDQNNQQLEKLLAQLQTLSGEQEAMSSEAQSLYEENSRLTSEKDQLSRDLEALLSQKEGEFLLKEQLSELEKKLQLALEERDHLNKLFDSEQDQKLLVKTQLCNFLKQMESKVSEESEDQDIVNVLQAVSESLAKINEEKHSLFFQYNARVAELEKEIKFLQEENEIQCEKLRSSLRDHEQEKVTLRKELEETLSKKEALEHDLLEMKNANEQTRLENQNLLIQVEEVSQKLCSRNENHNEKEKSFIKELEHLKPLLEEKESELQDLRAELVSLKDSLEKSPSVESDQPSVKEFEEKIGYLEKESKEKEEKINKLKLVAVKAKKELDSSRKETQILREELESVRSEKDQLSTSMRDLIQGAESYKNLLLEYDKQSEQLDKEKERANNFEHHVEDLTRQLKNTTFQCEKLNSDNEDLLARIETLQSNTRLLEVQILEAHKAKAVADRELEAEKLQKEQKIKEHASSICELEELQLQLQKEKKQLQKTMQELELVRKDAQQTTLMNMEIADYERLMKELNQKLANKNSKIEDLEQEIKIQKQKQETLQEEMTSLQASVQQYEEKNTKIKQLLVKTKKELADSKQAENDHLLLQASLKGELEASQQQIEGFKIQLAEVTAEKHKAHEHLKASAEQQQRTLGTYQQRVAALQEECRAAKAEQAAVTSEFESYKVRVHNVLKQQKNKSVSQTENEGAKQEREHLEMLIDQLKIKLQDTQNNLQVHVSELQALQSEHDALLERNSRLLQETVSKEAELREKLCSVQAENTALRTEQAQMAAQLAAQGEALRGGFRDQVRQLQEEHRGTVETLQQQLSQLEAQLFQLRSEPATRGPASSHQPLKNLRERRNTDLPLLDVQAVTREEGEGMETTEAESSSSASIHTPSLEQLLSSPEARLEPPSWHAEFTKEELVQKLSSTTKSADHLNSLLRETEATNAILLEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFILLKPGSERARLLPVVGTMLQLSPEEKARLAAAAQGEEENASRSSGWASYLHSWSGLR", "length": 1684, "header": "tr|F1SU27-1|F1SU27_PIG Isoform 1 of GRIP and coiled-coil domain containing 2 OS=Sus scrofa OX=9823 GN=GCC2 PE=1 SV=5 CANONICAL=F1SU27-1" }, "isoforms": [ { "isoform_ac": "A0A287B5U7-1", "url": "https://www.uniprot.org/uniprotkb/F1SU27/entry#A0A287B5U7-1", "sequence": { "sequence": "MQDPAHDGVASPATPGTGRYKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKSGGTDNITKALTERLDAILLEKAETEQQCVSLKKENIKMKQEVEDSVTKLEDMHKEFEQSQRNYMKEMENLKNELMAVHSKHSNDKAGWQKELEEAAKKQLELSKQLKFHNDSEEIVKKLQEEIQKIKPAFEEQILYLQQQLEAATNEKEQEITHLQGVIEANSQQYQKDINSLQEELLRLKSTHQEEVKELMCQIEASAIEHEAEVNNLNQLKENLVRQCEGEEKNIQQKYECELENLGKTSNANQENQMCSLLLKENTLVEQGENEKVKHLEDALKELESQHTILKDELTYMNNLKLKLEIDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKCELEDSDKQFRCIVEQHNKEVKSLKEQHQKEISELNEAFLSGSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVNELQQKLRTAFNEKDALLETVNRLQTENEKLLSQQEFVPELENTIKTLQEKNEEYLVSLSQRDTMAQELEAKISHLIEEKDDLISKMKSSHEEMNDLHKKCERENKLIVELREKVEQTTRYNSELEQKVNELTAGLEETLKEKDQNNQQLEKLLAQLQTLSGEQEAMSSEAQSLYEENSRLTSEKDQLSRDLEALLSQKEGEFLLKEQLSELEKKLQLALEERDHLNKLFDSEQDQKLLVKTQLCNFLKQMESKVSEESEDQDIVNVLQAVSESLAKINEEKHSLFFQYNARVAELEKEIKFLQEENEIQCEKLRSSLRDHEQEKVTLRKELEETLSKKEALEHDLLEMKNANEQTRLENQNLLIQVEEVSQKLCSRNENHNEKEKSFIKELEHLKPLLEEKESELQDLRAELVSLKDSLEKSPSVESDQPSVKEFEEKIGYLEKESKEKEEKINKLKLVAVKAKKELDSSRKETQILREELESVRSEKDQLSTSMRDLIQGAESYKNLLLEYDKQSEQLDKEKERANNFEHHVEDLTRQLKNTTFQCEKLNSDNEDLLARIETLQSNTRLLEVQILEAHKAKAVADRELEAEKLQKEQKIKEHASSICELEELQLQLQKEKKQLQKTMQELELVRKDAQQTTLMNMEIADYERLMKELNQKLANKNSKIEDLEQEIKIQKQKQETLQEEMTSLQASVQQYEEKNTKIKQLLVKTKKELADSKQAENDHLLLQASLKGELEASQQQIEGFKIQLAEVTAEKHKAHEHLKASAEQQQRTLGTYQQRVAALQEECRAAKAEQAAVTSEFESYKVRVHNVLKQQKNKSVSQTENEGILLWFLLTVSHGRLQGTVQTQGALCSVQAENTALRTEQAQMAAQLAAQGEALRGGFRDQVRQLQEEHRGTVETLQQQLSQLEAQLFQLRSEPATRGPASSHQPLKNLRERRNTDLPLLDVQAVTREEGEGMETTEAESSSSASIHTPSLEQLLSSPEARLEPPSWHAEFTKEELVQKLSSTTKSADHLNSLLRETEATNAILLEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFILLKPGSERARLLPVVGTMLQLSPEEKARLAAAAQGKHGLRTLAGSGARGL", "length": 1636, "header": "tr|A0A287B5U7-1|F1SU27_PIG Computationally mapped isoform of GRIP and coiled-coil domain containing 2 OS=Sus scrofa OX=9823 GN=GCC2 PE=1 SV=4 CANONICAL=F1SU27-1" }, "locus": { "chromosome": "3", "start_pos": 47758804, "end_pos": 47722598, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060003.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060003.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051460.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051460.3" } ] } }, { "isoform_ac": "A0A5G2Q9Q7-1", "url": "https://www.uniprot.org/uniprotkb/F1SU27/entry#A0A5G2Q9Q7-1", "sequence": { "sequence": "MQDPAHDGVASPATPGTGRYKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKSGGTDNITKALTERLDAILLEKAETEQQCVSLKKENIKMKQEVEDSVTKLEDMHKEFEQSQRNYMKEMENLKNELMAVHSKHSNDKAGWQKELEEAAKKQLELSKQLKFHNDSEEIVKKLQEEIQKIKPAFEEQILYLQQQLEAATNEKEQEITHLQGVIEANSQQYQKDINSLQEELLRLKSTHQEEVKELMCQIEASAIEHEAEVNNLNQLKENLVRQCEGEEKNIQQKYECELENLGKTSNANQENQMCSLLLKENTLVEQGENEKVKHLEDALKELESQHTILKDELTYMNNLKLKLEIDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKCELEDSDKQFRCIVEQHNKEVKSLKEQHQKEISELNEAFLSGSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVNELQQKLRTAFNEKDALLETVNRLQTENEKLLSQQEFVPELENTIKTLQEKNEEYLVSLSQRDTMAQELEAKISHLIEEKDDLISKMKSSHEEMNDLHKKCERENKLIVELREKVEQTTRYNSELEQKVNELTAGLEETLKEKDQNNQQLEKLLAQLQTLSGEQEAMSSEAQSLYEENSRLTSEKDQLSRDLEALLSQKEGEFLLKEQLSELEKKLQLALEERDHLNKLFDSEQDQKLLVKTQLCNFLKQMESKVSEESEDQDIVNVLQAVSESLAKINEEKHSLFFQYNARVAELEKEIKFLQEENEIQCEKLRSSLRDHEQEKVTLRKELEETLSKKEALEHDLLEMKNANEQTRLENQNLLIQVEEVSQKLCSRNENHNEKEKSFIKELEHLKPLLEEKESELQDLRAELVSLKDSLEKSPSVESDQPSVKEFEEKIGYLEKESKEKEEKINKLKLVAVKAKKELDSSRKETQILREELESVRSEKDQLSTSMRDLIQGAESYKNLLLEYDKQSEQLDKEKERANNFEHHVEDLTRQLKNTTFQCEKLNSDNEDLLARIETLQSNTRLLEVQILEAHKAKAVADRELEAEKLQKEQKIKEHASSICELEELQLQLQKEKKQLQKTMQELELVRKDAQQTTLMNMEIADYERLMKELNQKLANKNSKIEDLEQEIKIQKQKQETLQEEMTSLQASVQQYEEKNTKIKQLLVKTKKELADSKQAENDHLLLQASLKGELEASQQQIEGFKIQLAEVTAEKHKAHEHLKASAEQQQRTLGTYQQRVAALQEECRAAKAEQAAVTSEFESYKVRVHNVLKQQKNKSVSQTENEGAKQEREHLEMLIDQLKIKLQDTQNNLQVHVSELQALQSEHDALLERNSRLLQETVSKEAELREKLCSVQAENTALRTEQAQMAAQLAAQGEALRGGFRDQVRQLQEEHRGTVETLQQQLSQLEAQLFQLRSEPATRGPASSHQPLKNLRERRNTDLPLLDVQAVTREEGEGMETTEAESSSSASIHTPSLEQLLSSPEARLEPPSWHAEFTKEELVQKLSSTTKSADHLNSLLRETEATNAILLEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFILLKPGSERARLLPVVGTMLQLSPEEKARLAAAAQGKHGLRTLAGSGARGL", "length": 1677, "header": "tr|A0A5G2Q9Q7-1|F1SU27_PIG Computationally mapped isoform of GRIP and coiled-coil domain containing 2 OS=Sus scrofa OX=9823 GN=GCC2 PE=1 SV=3 CANONICAL=F1SU27-1" }, "locus": { "chromosome": "3", "start_pos": 47758804, "end_pos": 47722598, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086926.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086926.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061059.2", "url": "https://www.ensembl.org/id/ENSSSCP00000061059.2" } ] } }, { "isoform_ac": "A0A5G2QCH5-1", "url": "https://www.uniprot.org/uniprotkb/F1SU27/entry#A0A5G2QCH5-1", "sequence": { "sequence": "MQDPAHDGVASPATPGTGRYKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKSGGTDNITKALTERLDAILLEKAETEQQCVSLKKENIKMKQEVEDSVTKLEDMHKEFEQSQRNYMKEMENLKNELMAVHSKHSNDKAGWQKELEEAAKKQLELSKQLKFHNDSEEIVKKLQEEIQKIKPAFEEQILYLQQQLEAATNEKEQEITHLQGVIEANSQQYQKDINSLQEELLRLKSTHQEEVKELMCQIEASAIEHEAEVNNLNQLKENLVRQCEGEEKNIQQKYECELENLGKTSNANQENQMCSLLLKENTLVEQGENEKVKHLEDALKELESQHTILKDELTYMNNLKLKLEIDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKCELEDSDKQFRCIVEQHNKEVKSLKEQHQKEISELNEAFLSGSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVNELQQKLRTAFNEKDALLETVNRLQTENEKLLSQQEFVPELENTIKTLQEKNEEYLVSLSQRDTMAQELEAKISHLIEEKDDLISKMKSSHEEMNDLHKKCERENKLIVELREKVEQTTRYNSELEQKVNELTAGLEETLKEKDQNNQQLEKLLAQLQTLSGEQEAMSSEAQSLYEENSRLTSEKDQLSRDLEALLSQKEGEFLLKEQLSELEKKLQLALEERDHLNKLFDSEQDQKLLVKTQLCNFLKQMESKVSEESEDQDIVNVLQAVSESLAKINEEKHSLFFQYNARVAELEKEIKFLQEENEIQCEKLRSSLRDHEQEKVTLRKELEETLSKKEALEHDLLEMKNANEQTRLENQNLLIQVEEVSQKLCSRNENHNEKEKSFIKELEHLKPLLEEKESELQDLRAELVSLKDSLEKSPSVESDQPSVKEFEEKIGYLEKESKEKEEKINKLKLVAVKAKKELDSSRKETQILREELESVRSEKDQLSTSMRDLIQGAESYKNLLLEYDKQSEQLDKEKERANNFEHHVEDLTRQLKNTTFQCEKLNSDNEDLLARIETLQSNTRLLEVQILEAHKAKAVADRELEAEKLQKEQKIKEHASSICELEELQLQLQKEKKQLQKTMQELELVRKDAQQTTLMNMEIADYERLMKELNQKLANKNSKIEDLEQEIKIQKQKQETLQEEMTSLQASVQQYEEKNTKIKQLLVKTKKELADSKQAENDHLLLQASLKGELEASQQQIEGFKAEQAAVTSEFESYKVRVHNVLKQQKNKSVSQTENEGAKQEREHLEMLIDQLKIKLQDTQNNLQVHVSELQALQSEHDALLERNSRLLQETVSKEAELREKLCSVQAENTALRTEQAQMAAQLAAQGEALRGGFRDQVRQLQEEHRGTVETLQQQLSQLEAQLFQLRSEPATRGPASSHQPLKNLRERRNTDLPLLDVQAVTREEGEGMETTEAESSSSASIHTPSLEQLLSSPEARLEPPSWHAEFTKEELVQKLSSTTKSADHLNSLLRETEATNAILLEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFILLKPGSERARLLPVVGTMLQLSPEEKARLAAAAQGKHGLRTLAGSGARGL", "length": 1631, "header": "tr|A0A5G2QCH5-1|F1SU27_PIG Computationally mapped isoform of GRIP and coiled-coil domain containing 2 OS=Sus scrofa OX=9823 GN=GCC2 PE=1 SV=3 CANONICAL=F1SU27-1" }, "locus": { "chromosome": "3", "start_pos": 47758804, "end_pos": 47722598, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067356.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067356.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059729.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059729.2" } ] } }, { "isoform_ac": "A0A5G2R887-1", "url": "https://www.uniprot.org/uniprotkb/F1SU27/entry#A0A5G2R887-1", "sequence": { "sequence": "STSYKRALTERLDAILLEKAETEQQCVSLKKENIKMKQEVEDSVTKLEDMHKEFEQSQRNYMKEMENLKNELMAVHSKHSNDKAGWQKELEEAAKKQLELSKQLKFHNDSEEIVKKLQEEIQKIKPAFEEQILYLQQQLEAATNEKEQEITHLQGVIEANSQQYQKDINSLQEELLRLKSTHQEEVKELMCQIEASAIEHEAEVNNLNQLKENLVRQCEGEEKNIQQKYECELENLGKTSNANQENQMCSLLLKENTLVEQGENEKVKHLEDALKELESQHTILKDELTYMNNLKLKLEIDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKCELEDSDKQFRCIVEQHNKEVKSLKEQHQKEISELNEAFLSGSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVNELQQKLRTAFNEKDALLETVNRLQTENEKLLSQQEFVPELENTIKTLQEKNEEYLVSLSQRDTMAQELEAKISHLIEEKDDLISKMKSSHEEMNDLHKKCERENKLIVELREKVEQTTRYNSELEQKVNELTAGLEETLKEKDQNNQQLEKLLAQLQTLSGEQEAMSSEAQSLYEENSRLTSEKDQLSRDLEALLSQKEGEFLLKEQLSELEKKLQLALEERDHLNKLFDSEQDQKLLVKTQLCNFLKQMESKVSEESEDQDIVNVLQAVSESLAKINEEKHSLFFQYNARVAELEKEIKFLQEENEIQCEKLRSSLRDHEQEKVTLRKELEETLSKKEALEHDLLEMKNANEQTRLENQNLLIQVEEVSQKLCSRNENHNEKEKSFIKELEHLKPLLEEKESELQDLRAELVSLKDSLEKSPSVESDQPSVKEFEEKIGYLEKESKEKEEKINKLKLVAVKAKKELDSSRKETQILREELESVRSEKDQLSTSMRDLIQGAESYKNLLLEYDKQSEQLDKEKERANNFEHHVEDLTRQLKNTTFQCEKLNSDNEDLLARIETLQSNTRLLEVQILEAHKAKAVADRELEAEKLQKEQKIKEHASSICELEELQLQLQKEKKQLQKTMQELELVRKDAQQTTLMNMEIADYERLMKELNQKLANKNSKIEDLEQEIKIQKQKQETLQEEMTSLQASVQQYEEKNTKIKQLLVKTKKELADSKQAENDHLLLQASLKGELEASQQQIEGFKAEQAAVTSEFESYKVRVHNVLKQQKNKSVSQTENEGAKQEREHLEMLIDQLKIKLQDTQNNLQVHVSELQALQSEHDALLERNSRLLQETVSKEAELREKLCSVQAENTALRTEQAQMAAQLAAQGEALRGGFRDQVRQLQEEHRGTVETLQQQLSQLEAQLFQLRSEPATRGPASSHQPLKNLRERRNTDLPLLDVQAVTREEGEGMETTEAESSSSASIHTPSLEQLLSSPEARLEPPSWHAEFTKEELVQKLSSTTKSADHLNSLLRETEATNAILLEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFILLKPGSERARLLPVVGTMLQLSPEEKARLAAAAQGKHGLRTLAGSGARGL", "length": 1567, "header": "tr|A0A5G2R887-1|F1SU27_PIG Computationally mapped isoform of GRIP and coiled-coil domain containing 2 OS=Sus scrofa OX=9823 GN=GCC2 PE=1 SV=1 CANONICAL=F1SU27-1" }, "locus": { "chromosome": "3", "start_pos": 47752745, "end_pos": 47722598, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072046.1", "url": "https://www.ensembl.org/id/ENSSSCT00000072046.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066821.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066821.1" } ] } }, { "isoform_ac": "F1SU27-1", "url": "https://www.uniprot.org/uniprotkb/F1SU27/entry#F1SU27-1", "sequence": { "sequence": "MEDPAHDGVASPATPGTGRYKLETLPKEDLIKFAKKQMMLIQKAKSRCTELEKEIEELRSKSGGTDNITKALTERLDAILLEKAETEQQCVSLKKENIKMKQEVEDSVTKLEDMHKEFEQSQRNYMKEMENLKNELMAVHSKHSNDKAGWQKELEEAAKKQLELSKQLKFHNDSEEIVKKLQEEIQKIKPAFEEQILYLQQQLEAATNEKEQEITHLQGVIEANSQQYQKDINSLQEELLRLKSTHQEEVKELMCQIEASAIEHEAEVNNLNQLKENLVRQCEGEEKNIQQKYECELENLGKTSNANQENQMCSLLLKENTLVEQGENEKVKHLEDALKELESQHTILKDELTYMNNLKLKLEIDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKCELEDSDKQFRCIVEQHNKEVKSLKEQHQKEISELNEAFLSGSEKEKLTLMFEIQGLKEQCENLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVNELQQKLRTAFNEKDALLETVNRLQTENEKLLSQQEFVPELENTIKTLQEKNEEYLVSLSQRDTMAQELEAKISHLIEEKDDLISKMKSSHEEMNDLHKKCERENKLIVELREKVEQTTRYNSELEQKVNELTAGLEETLKEKDQNNQQLEKLLAQLQTLSGEQEAMSSEAQSLYEENSRLTSEKDQLSRDLEALLSQKEGEFLLKEQLSELEKKLQLALEERDHLNKLFDSEQDQKLLVKTQLCNFLKQMESKVSEESEDQDIVNVLQAVSESLAKINEEKHSLFFQYNARVAELEKEIKFLQEENEIQCEKLRSSLRDHEQEKVTLRKELEETLSKKEALEHDLLEMKNANEQTRLENQNLLIQVEEVSQKLCSRNENHNEKEKSFIKELEHLKPLLEEKESELQDLRAELVSLKDSLEKSPSVESDQPSVKEFEEKIGYLEKESKEKEEKINKLKLVAVKAKKELDSSRKETQILREELESVRSEKDQLSTSMRDLIQGAESYKNLLLEYDKQSEQLDKEKERANNFEHHVEDLTRQLKNTTFQCEKLNSDNEDLLARIETLQSNTRLLEVQILEAHKAKAVADRELEAEKLQKEQKIKEHASSICELEELQLQLQKEKKQLQKTMQELELVRKDAQQTTLMNMEIADYERLMKELNQKLANKNSKIEDLEQEIKIQKQKQETLQEEMTSLQASVQQYEEKNTKIKQLLVKTKKELADSKQAENDHLLLQASLKGELEASQQQIEGFKIQLAEVTAEKHKAHEHLKASAEQQQRTLGTYQQRVAALQEECRAAKAEQAAVTSEFESYKVRVHNVLKQQKNKSVSQTENEGAKQEREHLEMLIDQLKIKLQDTQNNLQVHVSELQALQSEHDALLERNSRLLQETVSKEAELREKLCSVQAENTALRTEQAQMAAQLAAQGEALRGGFRDQVRQLQEEHRGTVETLQQQLSQLEAQLFQLRSEPATRGPASSHQPLKNLRERRNTDLPLLDVQAVTREEGEGMETTEAESSSSASIHTPSLEQLLSSPEARLEPPSWHAEFTKEELVQKLSSTTKSADHLNSLLRETEATNAILLEQIKLLKSEIRRLERNQEREKSAANLEYLKNVLLQFILLKPGSERARLLPVVGTMLQLSPEEKARLAAAAQGEEENASRSSGWASYLHSWSGLR", "length": 1684, "header": "tr|F1SU27-1|F1SU27_PIG Isoform 1 of GRIP and coiled-coil domain containing 2 OS=Sus scrofa OX=9823 GN=GCC2 PE=1 SV=5 CANONICAL=F1SU27-1" }, "locus": { "chromosome": "3", "start_pos": 47758923, "end_pos": 47719649, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008915.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008915.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008689.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008689.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 14, "start_aa": "Thr", "end_pos": 14, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr14", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9Q7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9Q7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512405", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512405", "resource": "KEGG Pathway" }, { "id": "R-SSC-6811440", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "resource": "Reactome", "description": "Retrograde transport at the Trans-Golgi-Network" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "protein targeting to lysosome", "id": "GO:0006622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006622", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "Golgi ribbon formation", "id": "GO:0090161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090161", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "protein localization to Golgi apparatus", "id": "GO:0034067", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034067", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "microtubule anchoring", "id": "GO:0034453", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034453", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "microtubule organizing center organization", "id": "GO:0031023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031023", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "late endosome to Golgi transport", "id": "GO:0034499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034499", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "regulation of protein exit from endoplasmic reticulum", "id": "GO:0070861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070861", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" }, { "name": "recycling endosome to Golgi transport", "id": "GO:0071955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071955", "evidence": [ { "database": "UniProtKB", "id": "F1SU27", "url": "https://www.uniprot.org/uniprotkb/F1SU27" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1056, "end_pos": 1058, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1336, "end_pos": 1338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1666, "end_pos": 1668, "annotation": "n_glycosylation_sequon" }, { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SU27", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU27" }, { "id": "PS50913", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50913" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GRIP", "eco_id": "ECO_0000259", "start_pos": 1609, "end_pos": 1659, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 14 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1056, "end_pos": 1058 }, { "start_pos": 1336, "end_pos": 1338 }, { "start_pos": 1666, "end_pos": 1668 }, { "start_pos": 172, "end_pos": 174 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5I1-1", "uniprot_ac": "I3L5I1", "uniprot_id": "I3L5I1_PIG", "mass": { "chemical_mass": 82240.0, "monoisotopic_mass": 82240.0 }, "refseq": { "ac": "XP_020926722", "name": "ribosomal RNA processing protein 1 homolog B isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926722" }, "gene_names": [ { "name": "RRP1B", "type": "recommended", "evidence": [ { "id": "I3L5I1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ] }, { "name": "RRP1B", "type": "synonym", "evidence": [ { "id": "XP_020926722", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926722" } ] } ], "protein_names": [ { "name": "Ribosomal RNA processing 1B", "type": "synonym", "evidence": [ { "id": "I3L5I1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5I1/entry#names_and_taxonomy" } ] }, { "name": "ribosomal RNA processing protein 1 homolog B isoform X4", "type": "synonym", "evidence": [ { "id": "XP_020926722", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926722" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RRP1B", "url": "https://www.uniprot.org/uniprotkb/I3L5I1", "locus": { "chromosome": "13", "start_pos": 206651123, "end_pos": 206629204, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021698", "url": "https://www.ensembl.org/id/ENSSSCG00000021698" } ] } } ], "crossref": [ { "id": "I3L5I1", "url": "https://alphafold.ebi.ac.uk/entry/I3L5I1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021698", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021698", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100621155", "url": "https://www.ncbi.nlm.nih.gov/gene/100621155", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PPALYCK", "url": "https://omabrowser.org/oma/group/PPALYCK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13026", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13026", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13026:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13026:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05997", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05997", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020926722", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020926722", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B786", "url": "https://www.uniprot.org/uniprotkb/A0A287B786", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B786-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B786-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5I1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPAMQPAEIQFAQRLASHEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQEELASAISQLVHVVNNSEAQHLFLQTFWQTVTREWTGIDRRRLDKLCMLTRLVLRQSFEVLKRSGWEESQIQLFLDVLMKEVLHPESQAPSGVKFHFVAIYLEELSRVGGKELLADQNLKFIDPFCKVAARAKDHALVQTIARGVFEVIVDQSPLVPEGTLGVQKAREGDSDLSEEETSESDMAWRRAAGKKPPAPGGPQSRKEGVGDGGRDDAGSSEDAGPLLQFDYRAVAERLREVATSKDVPPFNRKRLSRLIRKFRDLSEGRIPRLSFAEDAPAAPDDRALSRGRRKRKASKLRGDAEVGREQGTKSFPAEEEEAEGGLRKRKRKRKKRNHLRPAHLGPGGEAVCPEQNGSREPEAGPGKAQQTSAAELGAGAAPSLSRRKRLRKRSLRAQVQSPESAASPPEDAAPGGPASGPTQGVALAGGAPVLKKQRKLGALLVNGSGPPTRAWPPQEGPPARPADGGGCPAAVPQSGELGRKKGEPGGLDLRPPCARKAAVLKKRKKVSQMSPLAAHRGLKLVQALGGAGILRPLRKELRTEKDFVKFEAAFSPKPLFFRKAKSSTTAPPGTPPQPNRTPSSAKKVTFGLSRNMTAGPVTAPGAGGCRTEAPAVEWGLRLPPGRVQEDRQEPLGQSHGPLPRGLQPRAEAAARGAEDAHQLAGRRAPGDQAAADSHAKEKAHGDGLLLG", "length": 759, "header": "tr|I3L5I1-1|I3L5I1_PIG Isoform 1 of Ribosomal RNA processing 1B OS=Sus scrofa OX=9823 GN=RRP1B PE=3 SV=4 CANONICAL=I3L5I1-1" }, "isoforms": [ { "isoform_ac": "A0A287B786-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1/entry#A0A287B786-1", "sequence": { "sequence": "MRSWKSGGFSQEELLKIWKGLFYCMWVQDEPLLQEELASAISQLVHVVNNSEAQHLFLQTFWQTVTREWTGIDRRRLDKLCMLTRLVLRQSFEVLKRSGWEESQIQLFLDVLMKEVLHPESQAPSGVKFHFVAIYLEELSRVGGKELLADQNLKFIDPFCKVAARAKDHALVQTIARGVFEVIVDQSPLVPEGTLGVQKAREGDSDLSEEETSESDMAWRRAAGKKPPAPGGPQSRKEGVGDGGRDDAGSSEDAGPLLQFDYRAVAERLREVATSKDVPPFNRKRLSRLIRKFRDLSEGRIPRLSFAEDAPAAPDDRALSRGRRKRKASKLRGDAEVGREQGTKSFPAEEEEAEGGLRKRKRKRKKRNHLRPAHLGPGGEAVCPEQNGSREPEAGPGKAQQTSAAELGAGAAPSLSRRKRLRKRSLRAQVQSPESAASPPEDAAPGGPASGPTQGVALAGGAPVLKKQRKLGALLVNGSGPPTRAWPPQEGPPARPADGGGCPAAVPQSGELGRKKGEPGGLDLRPPCARKAAVLKKRKKVSQMSPLAAHRGLKLVQALGGAGILRPLRKELRTEKDFVKFEAAFSPKPLFFRKAKSSTTAPPGTPPQPNRTPSSAKKVTFGLSRNMTAEFRKTDKSLLVSPTGPSRVAFNPAQRPLHGVLKTPTSSPAGAPLGTRQPLTATPKRRPTAMDFF", "length": 693, "header": "tr|A0A287B786-1|I3L5I1_PIG Computationally mapped isoform of Ribosomal RNA processing 1B OS=Sus scrofa OX=9823 GN=RRP1B PE=3 SV=1 CANONICAL=I3L5I1-1" }, "locus": { "chromosome": "13", "start_pos": 206651048, "end_pos": 206629947, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039036.1", "url": "https://www.ensembl.org/id/ENSSSCT00000039036.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051941.1", "url": "https://www.ensembl.org/id/ENSSSCP00000051941.1" } ] } }, { "isoform_ac": "I3L5I1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1/entry#I3L5I1-1", "sequence": { "sequence": "MAPAMQPAEIQFAQRLASHEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQEELASAISQLVHVVNNSEAQHLFLQTFWQTVTREWTGIDRRRLDKLCMLTRLVLRQSFEVLKRSGWEESQIQLFLDVLMKEVLHPESQAPSGVKFHFVAIYLEELSRVGGKELLADQNLKFIDPFCKVAARAKDHALVQTIARGVFEVIVDQSPLVPEGTLGVQKAREGDSDLSEEETSESDMAWRRAAGKKPPAPGGPQSRKEGVGDGGRDDAGSSEDAGPLLQFDYRAVAERLREVATSKDVPPFNRKRLSRLIRKFRDLSEGRIPRLSFAEDAPAAPDDRALSRGRRKRKASKLRGDAEVGREQGTKSFPAEEEEAEGGLRKRKRKRKKRNHLRPAHLGPGGEAVCPEQNGSREPEAGPGKAQQTSAAELGAGAAPSLSRRKRLRKRSLRAQVQSPESAASPPEDAAPGGPASGPTQGVALAGGAPVLKKQRKLGALLVNGSGPPTRAWPPQEGPPARPADGGGCPAAVPQSGELGRKKGEPGGLDLRPPCARKAAVLKKRKKVSQMSPLAAHRGLKLVQALGGAGILRPLRKELRTEKDFVKFEAAFSPKPLFFRKAKSSTTAPPGTPPQPNRTPSSAKKVTFGLSRNMTAGPVTAPGAGGCRTEAPAVEWGLRLPPGRVQEDRQEPLGQSHGPLPRGLQPRAEAAARGAEDAHQLAGRRAPGDQAAADSHAKEKAHGDGLLLG", "length": 759, "header": "tr|I3L5I1-1|I3L5I1_PIG Isoform 1 of Ribosomal RNA processing 1B OS=Sus scrofa OX=9823 GN=RRP1B PE=3 SV=4 CANONICAL=I3L5I1-1" }, "locus": { "chromosome": "13", "start_pos": 206651053, "end_pos": 206629249, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028037.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028037.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019280.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019280.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 490, "start_aa": "Thr", "end_pos": 490, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr490", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 642, "start_aa": "Thr", "end_pos": 642, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr642", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B786", "url": "https://www.uniprot.org/uniprotkb/A0A287B786" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YF84-1", "protein_name": "Ribosomal RNA processing 1B", "gene_name": "RRP1B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPAAAQAPEIQFAQRLAANEKRIRDRAVKKLRGYISLRTQRPGGGFSQEELLKIWKGLFYCMWMQDKPLLQEELANNISQLIHVIQNTEAQHLFIRTFWQTMSREWNGIDNLRLDKYYMLIRMILRQSFEVLKRNDWDESLRELLLQLLMKEVMDPDSNAPKGIKFHFIDIYLQELAKVGAKELTADQSLKFIEPFCNFVAQSKDPSVMHAVASGIFEIIVDQSPYAIEDLMKELESSGDEEDVSEDDEQGKKEMLKTKASRRLSGKSAQSAEKTEDVDENADDSIGPVLQFDYKAVADKLFELASKKNTPALNRKRLYKLVKKFQDLAEGIFPQDFPEDVSTDEDDDTFSRGRRKKKVVKPSGKNSLEKVKGSGKDEQEASSAKETSVPQKKRKKRKIRESPHADSGTTDGNSEEGIAETSGSVILNPGKMPDNKMKKKKKLLVNETNEIRNAVSDTGDKHSVSAQSSQADTEQSKKIQSEKMNPKVQNVLGKLECQNGPANAKKAEDVNTSLTPLIPKVGKKKQKAGSALVNGENFSQQTDLKCNKEGPLSRDVDSESEPSRKVKLKKKTKLVALEGIEVSNQKAATLKKKRKVKEVLNSVEANGILETACKKSKKEESSTALSPLKKKKAKQGSDFVKFEKSTVPKALLFRKARSTISSTRASIPLNKLQSSGSKKVTFGLNKNMTAEFKKTDKSILVSPEGPSRVAFNPAQKPRHGVLKSPAGTPDGEPKLKKPLTAQAKKKTTARAFF", "length": 754 }, "evidence": [ { "id": "I3L5I1", "url": "https://omabrowser.org/oma/group/I3L5I1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LB97-1", "protein_name": "Ribosomal RNA processing 1B", "gene_name": "Rrp1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAPAMQSTELQFAQRLASSEKGVRDRAVRKLRQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPLLQEELANIISQLIHVVNSSEAQHLFIQTFWQTVNREWQGIDKLRLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESRSPNGVRSHLIDVYLDELSTVGGRELLADQNLKLIDPFCRIAAKTKEPQTKASPDYTRSCSDEGKKAEVLVPVNSATSWLPIQDALPHQTLSFCLSCGTCHTLVQTVAKGVFEVIVDQSAFVPEESVEEQKTKEDGNGLPANELACQKVVGGKKTALDECLRDGVIGSRERDICAALKDSGSPLQFDYKAVADRLLEIANSKSTPPFNRKRLCRLVRKFQDLSEGNGAQLSFAEDISAGENGQALSQRRHKRKRKKLLERAALEREEGNTVSAAGEEDGGGHIHKRKRKKRKRSHFQSDTQDLGSVAEAAVPSADSEPGAAQRHALQACVAAPTAEATSNTRENSSEPTPATPIHSKRKRQRKKNLRAHREIWKSTTLPQEDVSKNDPASGQPQTALISSSEGGQARKRKRKLGALPVSSGDLTVQKAGTPASPVEGNDGQTTLPRCKRSQKKTASNTLDHYDPSSQKTAISKKRKKMKQTSNGVLECSAGQIQALGSNRTLKKPLKMEDDLVKFDTRFLPKALFFRKAKNSSATRPQGPTVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGLSRVAFNPEQRPLHGVLKTPTSSPASTPLSTMKLPATTPKRRPRAADFF", "length": 786 }, "evidence": [ { "id": "I3L5I1", "url": "https://omabrowser.org/oma/group/I3L5I1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q14684-1", "protein_name": "Ribosomal RNA processing protein 1 homolog B", "gene_name": "RRP1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAPAMQPAEIQFAQRLASSEKGIRDRAVKKLRQYISVKTQRETGGFSQEELLKIWKGLFYCMWVQDEPLLQEELANTIAQLVHAVNNSAAQHLFIQTFWQTMNREWKGIDRLRLDKYYMLIRLVLRQSFEVLKRNGWEESRIKVFLDVLMKEVLCPESQSPNGVRFHFIDIYLDELSKVGGKELLADQNLKFIDPFCKIAAKTKDHTLVQTIARGVFEAIVDQSPFVPEETMEEQKTKVGDGDLSAEEIPENEVSLRRAVSKKKTALGKNHSRKDGLSDERGRDDCGTFEDTGPLLQFDYKAVADRLLEMTSRKNTPHFNRKRLSKLIKKFQDLSEGSSISQLSFAEDISADEDDQILSQGKHKKKGNKLLEKTNLEKEKGSRVFCVEEEDSESSLQKRRRKKKKKHHLQPENPGPGGAAPSLEQNRGREPEASGLKALKARVAEPGAEATSSTGEESGSEHPPAVPMHNKRKRPRKKSPRAHREMLESAVLPPEDMSQSGPSGSHPQGPRGSPTGGAQLLKRKRKLGVVPVNGSGLSTPAWPPLQQEGPPTGPAEGANSHTTLPQRRRLQKKKAGPGSLELCGLPSQKTASLKKRKKMRVMSNLVEHNGVLESEAGQPQALGSSGTCSSLKKQKLRAESDFVKFDTPFLPKPLFFRRAKSSTATHPPGPAVQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGPSRVAFDPEQKPLHGVLKTPTSSPASSPLVAKKPLTTTPRRRPRAMDFF", "length": 758 }, "evidence": [ { "id": "I3L5I1", "url": "https://omabrowser.org/oma/group/I3L5I1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91YK2-1", "protein_name": "Ribosomal RNA processing protein 1 homolog B", "gene_name": "Rrp1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALAMQSSEFQFAQRLASSEKGVRDRAVRKLRQYLSARTQSDTGSFSQEELLKIWKGLFYCMWVQDEPLLQEELANIISQLIHVVNSLEAQYLFIQTFWQTMNREWQGIDKLQLDKYYMLIRLVLRQSFEVLKRNAWEESQITLFLDILMKEILSPESQSPNGVRTHLIDVYLEELTTVGGAELLADQNLKLIDPFCRIAAKTKDHTLVQTVARGVFEVIVDQSACVPQESVEERKTKEDGSGFPTKALACRKAVSGKKAALDECLRDGVIGSRERDICAALKDSGSPLQFDYKAVADRLLEIANSKSTPPFNRKRLCRLVRKFQDLCEGNGAPLSSAEDNGQRRHKRKRKKLLESEKGDTVSPAAEEDSGGHIHKKKRKKRKRSHFQPDTQNLDAVAVPKVPDSESEPDTAQRQAPCGQACVTEPTAEAVSSIGENSSKPTPVMPIHNKRKRPRKKKLRAHKEICKSTTLPQEDMSKNDAVSGHSQSSAAHISSSEGVQAQKRKRKLGALPDSSSDLPVQKSGTPTSPVEGKDGQTTLPRCKRSQKKTASSTLDPCDPSSQKPAISKKKKKTMKLMSNGVLESNPGQIQALGSNRTLKKPLKTEDDFVKFDTRFLPKPLFFRKAKNSSATRPQGPAGQLNKTPSSSKKVTFGLNRNMTAEFKKTDKSILVSPTGLSRVAFNPEQRPLHGVLKTATSSPASTPLSPMRLPATTPKRRPRAADFF", "length": 724 }, "evidence": [ { "id": "I3L5I1", "url": "https://omabrowser.org/oma/group/I3L5I1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" }, { "name": "preribosome, small subunit precursor", "id": "GO:0030688", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030688", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" }, { "name": "granular component", "id": "GO:0001652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001652", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" }, { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" }, { "name": "cellular response to virus", "id": "GO:0098586", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098586", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" }, { "name": "host-mediated activation of viral transcription", "id": "GO:0043923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043923", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "I3L5I1", "url": "https://www.uniprot.org/uniprotkb/I3L5I1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 424, "end_pos": 426, "annotation": "n_glycosylation_sequon" }, { "start_pos": 514, "end_pos": 516, "annotation": "n_glycosylation_sequon" }, { "start_pos": 647, "end_pos": 649, "annotation": "n_glycosylation_sequon" }, { "start_pos": 663, "end_pos": 665, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5I1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 759, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5I1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5I1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 490, 642 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 424, "end_pos": 426 }, { "start_pos": 514, "end_pos": 516 }, { "start_pos": 647, "end_pos": 649 }, { "start_pos": 663, "end_pos": 665 }, { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR87-1", "uniprot_ac": "F1SR87", "uniprot_id": "F1SR87_PIG", "mass": { "chemical_mass": 28316.0, "monoisotopic_mass": 28316.0 }, "refseq": { "ac": "XP_001927741", "name": "AN1-type zinc finger protein 2B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927741" }, "gene_names": [ { "name": "ZFAND2B", "type": "recommended", "evidence": [ { "id": "F1SR87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ] }, { "name": "ZFAND2B", "type": "synonym", "evidence": [ { "id": "XP_001927741", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927741" } ] } ], "protein_names": [ { "name": "AN1-type zinc finger protein 2B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001927741", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927741" } ] }, { "name": "Zinc finger AN1-type containing 2B", "type": "synonym", "evidence": [ { "id": "F1SR87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR87/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZFAND2B", "url": "https://www.uniprot.org/uniprotkb/F1SR87", "locus": { "chromosome": "15", "start_pos": 121246068, "end_pos": 121243116, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016208", "url": "https://www.ensembl.org/id/ENSSSCG00000016208" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016208", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016208", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157982", "url": "https://www.ncbi.nlm.nih.gov/gene/100157982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035896", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035896", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157982", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157982", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DESKHNR", "url": "https://omabrowser.org/oma/group/DESKHNR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SR87", "url": "https://www.orthodb.org/?gene=F1SR87", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14677", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14677", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14677:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14677:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01428", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01428", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02809", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02809", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25403", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25403", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927741", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927741", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287B7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A287B7Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287B7Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A287B7Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR87-1", "url": "https://www.uniprot.org/uniprotkb/F1SR87-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCASAYQKDIQVPVCPLCNVPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNRCERSGCRQREMMKLTCERCGRNFCIKHRHPLDHDCSGEGHGHPTSRAGLAAISRAQSLAASAKTIPSPNQTLPSSTSASRATTQSPSRTTPPVIALQNGLSEDEALQRALELSLAETKPQVPSSQEEEDLALAQALSASEAEYRQQQAQSRSLKPSNCTLC", "length": 260, "header": "tr|F1SR87-1|F1SR87_PIG Isoform 1 of Zinc finger AN1-type containing 2B OS=Sus scrofa OX=9823 GN=ZFAND2B PE=4 SV=1 CANONICAL=F1SR87-1" }, "isoforms": [ { "isoform_ac": "A0A287B7Q6-1", "url": "https://www.uniprot.org/uniprotkb/F1SR87/entry#A0A287B7Q6-1", "sequence": { "sequence": "MEFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCASAYQKIFTNRCERSGCRQREMMKLTCERCGRNFCIKHRHPLDHDCSGEGHGHPTSRAGLAAISRAQSLAASAKTIPSPNQTLPSSTSASRATTQSPSRTTPPVIALQNGLSEDEALQRALELSLAETKPQVPSSQEEEDLALAQALSASEAEYRQQQAQSRSLKPSNCTLC", "length": 216, "header": "tr|A0A287B7Q6-1|F1SR87_PIG Computationally mapped isoform of Zinc finger AN1-type containing 2B OS=Sus scrofa OX=9823 GN=ZFAND2B PE=4 SV=1 CANONICAL=F1SR87-1" }, "locus": { "chromosome": "15", "start_pos": 121245741, "end_pos": 121243366, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000049544.2", "url": "https://www.ensembl.org/id/ENSSSCT00000049544.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000052550.2", "url": "https://www.ensembl.org/id/ENSSSCP00000052550.2" } ] } }, { "isoform_ac": "F1SR87-1", "url": "https://www.uniprot.org/uniprotkb/F1SR87/entry#F1SR87-1", "sequence": { "sequence": "MEFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAQHHCASAYQKDIQVPVCPLCNVPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNRCERSGCRQREMMKLTCERCGRNFCIKHRHPLDHDCSGEGHGHPTSRAGLAAISRAQSLAASAKTIPSPNQTLPSSTSASRATTQSPSRTTPPVIALQNGLSEDEALQRALELSLAETKPQVPSSQEEEDLALAQALSASEAEYRQQQAQSRSLKPSNCTLC", "length": 260, "header": "tr|F1SR87-1|F1SR87_PIG Isoform 1 of Zinc finger AN1-type containing 2B OS=Sus scrofa OX=9823 GN=ZFAND2B PE=4 SV=1 CANONICAL=F1SR87-1" }, "locus": { "chromosome": "15", "start_pos": 121245741, "end_pos": 121243366, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017649.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017649.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017171.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017171.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287B7Q6", "url": "https://www.uniprot.org/uniprotkb/A0A287B7Q6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157982", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157982", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q4KLG9-1", "protein_name": "AN1-type zinc finger protein 2B", "gene_name": "Zfand2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEFPDLGAHCSEPSCQRLDFLPLKCDACSGIFCADHVAYAHHHCGSAYQKDIQVPVCPLCNVPVPVARGEPPDRAVGEHIDRDCRSDPAQQKRKIFTNKCERSGCRQREMMKLTCDRCGRNFCIKHRHPLDHDCSGEGHPTSRAGLAAISRAQGLASTSTVPSPSRTLPSSSSPSRATPQLPPRTTSPVIALQNGLSEDEALQRALELSLAEAKPQIPSSQEEEDLALAQALSASEAEYQQQQAQSRSLKPSNCSLC", "length": 257 }, "evidence": [ { "id": "F1SR87", "url": "https://omabrowser.org/oma/group/F1SR87/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" }, { "name": "K48-linked polyubiquitin modification-dependent protein binding", "id": "GO:0036435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036435", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" }, { "name": "ubiquitin binding", "id": "GO:0043130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043130", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" }, { "name": "proteasome complex", "id": "GO:0000502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000502", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" }, { "name": "protein targeting to ER", "id": "GO:0045047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045047", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" }, { "name": "regulation of insulin-like growth factor receptor signaling pathway", "id": "GO:0043567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043567", "evidence": [ { "database": "UniProtKB", "id": "F1SR87", "url": "https://www.uniprot.org/uniprotkb/F1SR87" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SR87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR87" }, { "id": "PS51039", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51039" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AN1-type", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 52, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 168, "end_pos": 170 }, { "start_pos": 256, "end_pos": 258 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L7C7-1", "uniprot_ac": "I3L7C7", "uniprot_id": "I3L7C7_PIG", "mass": { "chemical_mass": 108979.0, "monoisotopic_mass": 108979.0 }, "refseq": {}, "gene_names": [ { "name": "CCDC66", "type": "recommended", "evidence": [ { "id": "I3L7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ] } ], "protein_names": [ { "name": "Coiled-coil domain containing 66", "type": "synonym", "evidence": [ { "id": "I3L7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7C7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC66", "url": "https://www.uniprot.org/uniprotkb/I3L7C7", "locus": { "chromosome": "13", "start_pos": 38492430, "end_pos": 38438720, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021439", "url": "https://www.ensembl.org/id/ENSSSCG00000021439" } ] } } ], "crossref": [ { "id": "I3L7C7", "url": "https://alphafold.ebi.ac.uk/entry/I3L7C7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021439", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021439", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR039183", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039183", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22736:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22736:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15236", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15236", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A287BCI0", "url": "https://www.uniprot.org/uniprotkb/A0A287BCI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BCI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BCI0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7C7-1", "url": "https://www.uniprot.org/uniprotkb/I3L7C7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNLGDGLKLETEFLDGKTKLILSPYEHKSKISVKMGNKTKIAKCPLRTKQTGYILKSTQNTCVRSEKVLQKKRIGSETLLAKGEKNSMTFSPTKDLCKQYADCFHIQKEISPATPNIQKTRNTTNTFVVAKQKPCKKRITAETMKSSLVCLTQDQLQQILLTINQGNKSFSLTEKAKEEETSQYSLNLNNIPDQPKDENIMGLLQKTEAVSSVQDEKKPVLNKNQVTSNQYEQKITTDNVWKPADIFSTLGERERDRSLLEAKKAQWKKELDEQVALKKKEKEASEKRYNPCKKSENDKVVWENLQILDQSKEAVLMEHPLSVIRQEHQKKWIEELNKQVEDDHQKKAEEKISSKGEEHDRWAMHSDSLKSYPDSQSQLSSRSTHKQPEYFCVSPDTQELADISSLYTPTTGSQVEPSEEEHIAKPVRDVVVAYSQKTNFLRSMTALLDPAQIEERDRRRQKQLEHQKAIIAQVEEKRRKKQLEEEQRKKEEQEEERRLAREREEMQKQYEEDILKQKQKEEIMTLKTNELFQTMQRAQELAQRLKQEQRIRELAQKGHDTSRLIKNLGVDTVQVEYNVSTNNIPNSRHCLDEFSGKMNTYINSIAFPKKDTGVQTDDLSTGIFANTESRCGSVIEREIINCSSPEIPAEFNEQFNTKKNKQELVSWDKGANLEKENSWYNDQCNQFTRTEKQTKHMKKYPKRPDWNINKPLRRYIPASEKYPKQLQKLREEKKVRRQMELLHLVERNNPGHISPNRGTSPEVLHSAHQETEPRFKWQLLKKEEEPRRINSFSKERSQSPPVPAVKNRTQQTQTLKNSNFAGDGQTDSSPGISEPLYFIPYVRTNEIYYLDPDAPLSRPLTQDPQYPSPHDCDQEQQLFENRDPLLNPNLVKNRDRQQAILKGLSELRQGLLQKQRELETNLMPLAANQEENFSSLF", "length": 937, "header": "tr|I3L7C7-1|I3L7C7_PIG Isoform 1 of Coiled-coil domain containing 66 OS=Sus scrofa OX=9823 GN=CCDC66 PE=4 SV=3 CANONICAL=I3L7C7-1" }, "isoforms": [ { "isoform_ac": "A0A287BCI0-1", "url": "https://www.uniprot.org/uniprotkb/I3L7C7/entry#A0A287BCI0-1", "sequence": { "sequence": "MGNKTKIAKCPLRTKQTGYILKSTQNTCVRSEKVLQKKRIGSETLLAKGEKNSMTFSPTKDLCKQYADCFHIQKEISPATPNIQKTRNTTNTFVVAKQKPCKKRITAETMKSSLVCLTQDQLQQILLTINQGNKSFSLTEKAKEEETSQYSLNLNNIPDQPKDENIMGLLQKTEAVSSVQDEKKPVLNKNQVTSNQYEQKITTDNVWKPADIFSTLGERERDRSLLEAKKAQWKKELDEQVALKKKEKEASEKRYNPCKKSENDKVVWENLQILDQSKEAVLMEHPLSVIRQEHQKKWIEELNKQVEDDHQKKAEEKISSKGEEHDRWAMHSDSLKSYPDSQSQLSSRSTHKQPEYFCVSPDTQELADISSLYTPTTGSQVEPSEEEHIAKPVRDVVVAYSQKTNFLRSMTALLDPAQIEERDRRRQKQLEHQKAIIAQVEEKRRKKQLEEEQRKKEEQEEERRLAREREEMQKQYEEDILKQKQKEEIMTLKTNELFQTMQRAQELAQRLKQEQRIRELAQKGHDTSRLIKNLGVDTVQVEYNVSTNNIPNSRHCLDEFSGKMNTYINSIAFPKKDTGVQTDDLSTGIFANTESRCGSVIEREIINCSSPEIPAEFNEQFNTKKNKQELVSWDKGANLEKENSWYNDQCNQFTRTEKQTKHMKKYPKRPDWNINKPLRRYIPASEKYPKQLQKLREEKKVRRQMELLHLVERNNPGHISPNRGTSPEVLHSAHQETEPRFKWQLLKKEEEPRRINSFSKERSQSPPVPAVKNRTQQTQTLKNSNFAGDGQTDSSPGISEPLYFIPYVRTNEIYYLDPDAPLSRPLTQDPQYPSPHDCDQEQQLFENRDPLLNPNLVKNRDRQQAILKGLSELRQGLLQKQRELETNLMPLAANQEENFSSLF", "length": 903, "header": "tr|A0A287BCI0-1|I3L7C7_PIG Computationally mapped isoform of Coiled-coil domain containing 66 OS=Sus scrofa OX=9823 GN=CCDC66 PE=4 SV=3 CANONICAL=I3L7C7-1" }, "locus": { "chromosome": "13", "start_pos": 38492251, "end_pos": 38450278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045249.3", "url": "https://www.ensembl.org/id/ENSSSCT00000045249.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054236.3", "url": "https://www.ensembl.org/id/ENSSSCP00000054236.3" } ] } }, { "isoform_ac": "I3L7C7-1", "url": "https://www.uniprot.org/uniprotkb/I3L7C7/entry#I3L7C7-1", "sequence": { "sequence": "MNLGDGLKLETEFLDGKTKLILSPYEHKSKISVKMGNKTKIAKCPLRTKQTGYILKSTQNTCVRSEKVLQKKRIGSETLLAKGEKNSMTFSPTKDLCKQYADCFHIQKEISPATPNIQKTRNTTNTFVVAKQKPCKKRITAETMKSSLVCLTQDQLQQILLTINQGNKSFSLTEKAKEEETSQYSLNLNNIPDQPKDENIMGLLQKTEAVSSVQDEKKPVLNKNQVTSNQYEQKITTDNVWKPADIFSTLGERERDRSLLEAKKAQWKKELDEQVALKKKEKEASEKRYNPCKKSENDKVVWENLQILDQSKEAVLMEHPLSVIRQEHQKKWIEELNKQVEDDHQKKAEEKISSKGEEHDRWAMHSDSLKSYPDSQSQLSSRSTHKQPEYFCVSPDTQELADISSLYTPTTGSQVEPSEEEHIAKPVRDVVVAYSQKTNFLRSMTALLDPAQIEERDRRRQKQLEHQKAIIAQVEEKRRKKQLEEEQRKKEEQEEERRLAREREEMQKQYEEDILKQKQKEEIMTLKTNELFQTMQRAQELAQRLKQEQRIRELAQKGHDTSRLIKNLGVDTVQVEYNVSTNNIPNSRHCLDEFSGKMNTYINSIAFPKKDTGVQTDDLSTGIFANTESRCGSVIEREIINCSSPEIPAEFNEQFNTKKNKQELVSWDKGANLEKENSWYNDQCNQFTRTEKQTKHMKKYPKRPDWNINKPLRRYIPASEKYPKQLQKLREEKKVRRQMELLHLVERNNPGHISPNRGTSPEVLHSAHQETEPRFKWQLLKKEEEPRRINSFSKERSQSPPVPAVKNRTQQTQTLKNSNFAGDGQTDSSPGISEPLYFIPYVRTNEIYYLDPDAPLSRPLTQDPQYPSPHDCDQEQQLFENRDPLLNPNLVKNRDRQQAILKGLSELRQGLLQKQRELETNLMPLAANQEENFSSLF", "length": 937, "header": "tr|I3L7C7-1|I3L7C7_PIG Isoform 1 of Coiled-coil domain containing 66 OS=Sus scrofa OX=9823 GN=CCDC66 PE=4 SV=3 CANONICAL=I3L7C7-1" }, "locus": { "chromosome": "13", "start_pos": 38492251, "end_pos": 38438771, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026637.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026637.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019932.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019932.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BCI0", "url": "https://www.uniprot.org/uniprotkb/A0A287BCI0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "photoreceptor inner segment", "id": "GO:0001917", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001917", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "axoneme", "id": "GO:0005930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005930", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "mitotic spindle assembly", "id": "GO:0090307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090307", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "microtubule nucleation", "id": "GO:0007020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007020", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "mitotic metaphase chromosome alignment", "id": "GO:0007080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007080", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "establishment of mitotic spindle orientation", "id": "GO:0000132", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000132", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "detection of light stimulus involved in visual perception", "id": "GO:0050908", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050908", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "regulation of cytokinesis", "id": "GO:0032465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032465", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "ciliary transition zone assembly", "id": "GO:1905349", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905349", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "microtubule bundle formation", "id": "GO:0001578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001578", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" }, { "name": "regulation of protein localization to cilium", "id": "GO:1903564", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903564", "evidence": [ { "database": "UniProtKB", "id": "I3L7C7", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 578, "end_pos": 580, "annotation": "n_glycosylation_sequon" }, { "start_pos": 641, "end_pos": 643, "annotation": "n_glycosylation_sequon" }, { "start_pos": 807, "end_pos": 809, "annotation": "n_glycosylation_sequon" }, { "start_pos": 932, "end_pos": 934, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L7C7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 937, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L7C7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L7C7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L7C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7C7" }, { "id": "PF15236", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15236" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCDC66", "eco_id": "ECO_0000259", "start_pos": 411, "end_pos": 562, "start_aa": "Thr", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 122, "end_pos": 124 }, { "start_pos": 167, "end_pos": 169 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 578, "end_pos": 580 }, { "start_pos": 641, "end_pos": 643 }, { "start_pos": 807, "end_pos": 809 }, { "start_pos": 932, "end_pos": 934 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5Y5-1", "uniprot_ac": "I3L5Y5", "uniprot_id": "I3L5Y5_PIG", "mass": { "chemical_mass": 41736.0, "monoisotopic_mass": 41736.0 }, "refseq": { "ac": "XP_020947487", "name": "SH3 and cysteine-rich domain-containing protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947487" }, "gene_names": [ { "name": "R3HDM2", "type": "recommended", "evidence": [ { "id": "I3L5Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ] }, { "name": "STAC3", "type": "recommended", "evidence": [ { "id": "I3L5Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ] }, { "name": "R3HDM2", "type": "synonym", "evidence": [ { "id": "I3L5Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ] }, { "name": "STAC3", "type": "synonym", "evidence": [ { "id": "XP_020947487", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947487" } ] } ], "protein_names": [ { "name": "SH3 and cysteine-rich domain-containing protein 3", "type": "recommended", "evidence": [ { "id": "I3L5Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5/entry#names_and_taxonomy" } ] }, { "name": "SH3 and cysteine-rich domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020947487", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947487" } ] } ], "function": [ { "annotation": "Required for normal excitation-contraction coupling in skeletal muscle and for normal muscle contraction in response to membrane depolarization. Required for normal Ca(2+) release from the sarcplasmic reticulum, which ultimately leads to muscle contraction. Probably functions via its effects on muscle calcium channels. Increases CACNA1S channel activity, in addition to its role in enhancing the expression of CACNA1S at the cell membrane. Has a redundant role in promoting the expression of the calcium channel CACNA1S at the cell membrane. Slows down the inactivation rate of the calcium channel CACNA1C.", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5#function" }, { "database": "UniProtKB", "id": "ARBA00057005", "url": "https://www.uniprot.org/uniprotkb/ARBA00057005#function" }, { "database": "UniProtKB", "id": "I3LLH4", "url": "https://www.uniprot.org/uniprotkb/I3LLH4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STAC3", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5", "locus": {} } ], "crossref": [ { "id": "I3L5Y5", "url": "https://alphafold.ebi.ac.uk/entry/I3L5Y5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026498", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026498", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "ENSSSCG00000029471", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029471", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02642", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02642", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11834", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11834", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11986", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11986", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20882", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20882", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100627117", "url": "https://www.ncbi.nlm.nih.gov/gene/100627117", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "100627213", "url": "https://www.ncbi.nlm.nih.gov/gene/100627213", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024771", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024771", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039688", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039688", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "I3L5Y5", "url": "https://www.orthodb.org/?gene=I3L5Y5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15135", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15135", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15135:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15135:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15672:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15672:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07653", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07653", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16664", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16664", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020947487", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947487", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BD49", "url": "https://www.uniprot.org/uniprotkb/A0A287BD49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BD49-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BD49-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0X2Z1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0X2Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0X2Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0X2Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JXL4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JXL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JXL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JXL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JXM4", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JXM4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1JXM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1JXM4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5Y5-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LIQ0", "url": "https://www.uniprot.org/uniprotkb/I3LIQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LIQ0-1", "url": "https://www.uniprot.org/uniprotkb/I3LIQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLH4", "url": "https://www.uniprot.org/uniprotkb/I3LLH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LLH4-1", "url": "https://www.uniprot.org/uniprotkb/I3LLH4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEKEVLESHKPSFPGETRQSGLQRLKQLFRKESTGTKEMELPPEPQANGEAVGAGGGPIYYIYEEEEEEEEEEEEPLPEPPKLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCFGKIPPGFRRAYSSPLYSNQQYACVKDLSAANRNDPVFETLRTGVIMANKERKKGQADKKNPLAAMMEEEPESARPEEGKPQDGNPEGDKKAEKKTPDDKHKQPGFQQSHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRSGERVHRVTRSFVGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGRKMGLFPTDFLEEI", "length": 364, "header": "tr|I3L5Y5-1|I3L5Y5_PIG Isoform 1 of SH3 and cysteine-rich domain-containing protein 3 OS=Sus scrofa OX=9823 GN=STAC3 PE=1 SV=2 CANONICAL=I3L5Y5-1" }, "isoforms": [ { "isoform_ac": "A0A287BD49-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5/entry#A0A287BD49-1", "sequence": { "sequence": "MSNSNTTQETLEIMKESEKKLVEESVNKNKFISKTPSKEEIEKESEDTSLRQETQRRTSNHGHARKRAKSNSKLKLVRSLAVCEESSAPFTDGPLETQDIIQLHISCPSDKEEEKSTKDVSEKEDKDKNKEKVPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQTGQNGYLNDIRLSKEAFSSSSHKRRQIFRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSFSGISILTRGDSIGSSKGGSAGRISRPGMALGAPEVCNQVTSSQSVRGLLPCTAQQQQQQQQLPALPPTPQQQPPLNNHMISQPVPALQPAPQPVQFSPGSCPQVLLPVSPPQQYNMADDLNNPFGQMSLSRQGSTEAADPSSALFQTPLISQHPQQTSFIMASTGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQPSQQPGLQPMMPNQQQAAYQGMIGVQQPQNQGLLSSQRSSMGGQMQGLVVQYTPLPSYQVPVGNDSQNVVQPPFQQPMLVPASQSVQGGLPAGGVPVYYSVIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMPQQYSGVSPSGPGVVVMQLNVPNGPQPPQNPSMVQWSHCKYYSMDQRGQKPGELYSPDTSPQANTQISNSPVTSPTQSPAPSPVTSLSNVCTGLSPLPVLTQFPRPGGPAQGDGRYSLLGQPLQYNLSICPPLLHGQSTYTVHQGQSGLKHGNRSKRQALKSASTDLGTTDVVLGRVLEVTDLPEGITRTEADKLFTQLAMSGAKIQWLKDAQGLPGGGGGDNGGTAENGRHADLAALYTIVAVFPSPLAAQNASLRLNNSVSRFKLRVAKKNYDLRILERASSQ", "length": 1008, "header": "tr|A0A287BD49-1|I3L5Y5_PIG Computationally mapped isoform of SH3 and cysteine-rich domain-containing protein 3 OS=Sus scrofa OX=9823 GN=STAC3 PE=1 SV=2 CANONICAL=I3L5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 22604912, "end_pos": 22559340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000063402.3", "url": "https://www.ensembl.org/id/ENSSSCT00000063402.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000054043.2", "url": "https://www.ensembl.org/id/ENSSSCP00000054043.2" } ] } }, { "isoform_ac": "A0A8D0X2Z1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5/entry#A0A8D0X2Z1-1", "sequence": { "sequence": "MSNSNTTQETLEIMKESEKKLVEESVNKNKFISKTPSKEEIEKESEDTSLRQETQRRTSNHGHARKRAKSNSKLKLVRSLAVCEESSAPFTDGPLETQDIIQLHISCPSDKEEEKSTKDVSEKEDKDKNKEKVPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQNGYLNDIRLSKEAFSSSSHKRRQIFRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSFSGISILTRGDSIGSSKGGSAGRISRPGMALGAPEVCNQVTSSQSVRGLLPCTAQQQQQQQQLPALPPTPQQQPPLNNHMISQPVPALQPAPQPVQFSPGSCPQVLLPVSPPQQYNMADDLNNPFGQMSLSRQGSTEAADPSSALFQTPLISQHPQQTSFIMASTGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQPSQQPGLQPMMPNQQQAAYQGMIGVQQPQNQGLLSSQRSSMGGQMQGLVVQYTPLPSYQVPVGNDSQNVVQPPFQQPMLVPASQSVQGGLPAGGVPVYYSVIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMPQQYSGVSPSGPGVVVMQLNVPNGPQPPQNPSMVQWSHCKYYSMDQRGQKPGELYSPDTSPQANTQISNSPVTSPTQSPAPSPVTSLSNVCTGLSPLPVLTQFPRPGGPAQGDGRYSLLGQPLQYNLSICPPLLHGQSTYTVHQGQSGLKHGNRSKRQALKSASTDLGTTDVVLGRVLEVTDLPEGITRTEADKLFTQLAMSGAKIQWLKDAQGLPGGGGGDNGGTAENGRHADLAALYTIVAVFPSPLAAQNASLRLNNSVSRFKLRVAKKNYDLRILERASSQ", "length": 1040, "header": "tr|A0A8D0X2Z1-1|I3L5Y5_PIG Computationally mapped isoform of SH3 and cysteine-rich domain-containing protein 3 OS=Sus scrofa OX=9823 GN=STAC3 PE=1 SV=1 CANONICAL=I3L5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 22604912, "end_pos": 22559340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089420.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089420.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064963.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064963.1" } ] } }, { "isoform_ac": "A0A8D1JXL4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5/entry#A0A8D1JXL4-1", "sequence": { "sequence": "MDHCQSKKLTHAVVSRDFIGTLSSHRGVHRGYYILLKKMSNSNTTQETLEIMKESEKKLVEESVNKNKFISKTPSKEEIEKESEDTSLRQETQDYEFLFDKRRTSNHGHARKRAKSNSKLKLVRSLAVCEESSAPFTDGPLETQDIIQLHISCPSDKEEEKSTKDVSEKEDKDKNKEKVPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQNGYLNDIRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSFSGISILTRGDSIGSSKGGSAGRISRPGMALGAPEVCNQVTSSQSVRGLLPCTAQQQQQQQQLPALPPTPQQQPPLNNHMISQADDLNNPFGQMSLSRQGSTEAADPSSALFQTPLISQHPQQTSFIMASTGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQPSQQPGLQPMMPNQQQAAYQGMIGVQQPQNQGLLSSQRSSMGGQMQGLVVQYTPLPSYQVPVGNDSQNVVQPPFQQPMLVPASQSVQGGLPAGGVPVYYSVIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMPQQYSGVSPSGPGVVVMQLNVPNGPQPPQNPSMVQWSHCKYYSMDQRGQKPGELYSPDTSPQANTQISNSPVTSPTQSPAPSPVTSLSNVCTGLSPLPVLTQFPRPGGPAQGDGRYSLLGQPLQYNLSICPPLLHGQSTYTVHQGQSGLKHGNRSKRQALKSASTDLGTTDVVLGRVLEVTDLPEGITRTEADKLFTQLAMSGAKIQWLKDAQGLPGGGGGDNGGTAENGRHADLAALYTIVAVFPSPLAAQNASLRLNNSVSRFKLRVAKKNYDLRILERASSQ", "length": 1034, "header": "tr|A0A8D1JXL4-1|I3L5Y5_PIG Computationally mapped isoform of SH3 and cysteine-rich domain-containing protein 3 OS=Sus scrofa OX=9823 GN=STAC3 PE=1 SV=1 CANONICAL=I3L5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 22655599, "end_pos": 22559340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027063.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027063.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024177.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024177.3" } ] } }, { "isoform_ac": "A0A8D1JXM4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5/entry#A0A8D1JXM4-1", "sequence": { "sequence": "MISYSCALSASGRTPCGGPWRPCSAVLRAALDTGRLSVGRWVRCSLSKMLLLARLRRRSRWLSRSKVLTCYAIPALDSWRLNIYSGVHRGYYILLKKMSNSNTTQETLEIMKESEKKLVEESVNKNKFISKTPSKEEIEKESEDTSLRQETQRRTSNHGHARKRAKSNSKLKLVRSLAVCEESSAPFTDGPLETQDIIQLHISCPSDKEEEKSTKDVSEKEDKDKNKEKVPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQDGRRSKSIEEREEEYQRVRERIFARETGQNGYLNDIRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSFSGISILTRGDSIGSSKGGSAGRISRPGMALGAPEVCNQVTSSQSVRGLLPCTAQQQQQQQQLPALPPTPQQQPPLNNHMISQADDLNNPFGQMSLSRQGSTEAADPSSALFQTPLISQHPQQTSFIMASTGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQPSQQPGLQPMMPNQQQAAYQGMIGVQQPQNQGLLSSQRSSMGGQMQGLVVQYTPLPSYQVPVGNDSQNVVQPPFQQPMLVPASQSVQGGLPAGGVPVYYSVIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMPQQYSGVSPSGPGVVVMQLNVPNGPQPPQNPSMVQWSHCKYYSMDQRGQKPGELYSPDTSPQANTQISNSPVTSPTQSPAPSPVTSLSNVCTGLSPLPVLTQFPRPGGPAQGDGRYSLLGQPLQYNLSICPPLLHGQSTYTVHQGQSGLKHGNRSKRQALKSASTDLGTTDVVLGRVLEVTDLPEGITRTEADKLFTQLAMSGAKIQWLKDAQGLPGGGGGDNGGTAENGRHADLAALYTIVAVFPSPLAAQNASLRLNNSVSRFKLRVAKKNYDLRILERASSQ", "length": 1079, "header": "tr|A0A8D1JXM4-1|I3L5Y5_PIG Computationally mapped isoform of SH3 and cysteine-rich domain-containing protein 3 OS=Sus scrofa OX=9823 GN=STAC3 PE=1 SV=1 CANONICAL=I3L5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 22718938, "end_pos": 22559340, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000055158.3", "url": "https://www.ensembl.org/id/ENSSSCT00000055158.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000045068.2", "url": "https://www.ensembl.org/id/ENSSSCP00000045068.2" } ] } }, { "isoform_ac": "I3L5Y5-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5/entry#I3L5Y5-1", "sequence": { "sequence": "MTEKEVLESHKPSFPGETRQSGLQRLKQLFRKESTGTKEMELPPEPQANGEAVGAGGGPIYYIYEEEEEEEEEEEEPLPEPPKLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCFGKIPPGFRRAYSSPLYSNQQYACVKDLSAANRNDPVFETLRTGVIMANKERKKGQADKKNPLAAMMEEEPESARPEEGKPQDGNPEGDKKAEKKTPDDKHKQPGFQQSHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRSGERVHRVTRSFVGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGRKMGLFPTDFLEEI", "length": 364, "header": "tr|I3L5Y5-1|I3L5Y5_PIG Isoform 1 of SH3 and cysteine-rich domain-containing protein 3 OS=Sus scrofa OX=9823 GN=STAC3 PE=1 SV=2 CANONICAL=I3L5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 22555010, "end_pos": 22549356, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032101.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032101.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019436.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019436.2" } ] } }, { "isoform_ac": "I3LIQ0-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5/entry#I3LIQ0-1", "sequence": { "sequence": "MSNSNTTQETLEIMKESEKKLVEESVNKNKFISKTPSKEEIEKESEDTSLRQETQRRTSNHGHARKRAKSNSKLKLVRSLAVCEESSAPFTDGPLETQDIIQLHISCPSDKEEEKSTKDVSEKEDKDKNKEKVPRKMLSRDSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQTGQNGYLNDIRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSFSGISILTRGDSIGSSKGGSAGRISRPGMALGAPEVCNQVTSSQSVRGLLPCTAQQQQQQQQLPALPPTPQQQPPLNNHMISQADDLNNPFGQMSLSRQGSTEAADPSSALFQTPLISQHPQQTSFIMASTGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPGQYPNSNQQYRPLSHPVAYSPQRGQQLPQPSQQPGLQPMMPNQQQAAYQGMIGVQQPQNQGLLSSQRSSMGGQMQGLVVQYTPLPSYQVPVGNDSQNVVQPPFQQPMLVPASQSVQGGLPAGGVPVYYSVIPPAQQNGTSPSVGFLQPPGSEQYQMPQSPSPCSPPQMPQQYSGVSPSGPGVVVMQLNVPNGPQPPQNPSMVQWSHCKYYSMDQRGQKPGELYSPDTSPQANTQISNSPVTSPTQSPAPSPVTSLSNVCTGLSPLPVLTQFPRPGGPAQGDGRYSLLGQPLQYNLSICPPLLHGQSTYTVHQGQSGLKHGNRSKRQALKSASTDLGTTDVAAANRNDPVFETLRTGVIMANKERKKGQADKKNPLAAMMEEEPESARPEEGKPQDGNPEGDKKAEKKTPDDKAWREDHRH", "length": 923, "header": "tr|I3LIQ0-1|I3L5Y5_PIG Computationally mapped isoform of SH3 and cysteine-rich domain-containing protein 3 OS=Sus scrofa OX=9823 GN=STAC3 PE=1 SV=4 CANONICAL=I3L5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 22604912, "end_pos": 22549878, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031367.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031367.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023956.4", "url": "https://www.ensembl.org/id/ENSSSCP00000023956.4" } ] } }, { "isoform_ac": "I3LLH4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5/entry#I3LLH4-1", "sequence": { "sequence": "MTEKEVLESHKPSFPGETRQSGLQRLKQLFRKESTGTKEMELPPEPQANGEAVGAGGGPIYYIYEEEEEEEEEEEEPLPEPPKLVNDKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRCFGKIVIMSSFFSHIPTIAAANRNDPVFETLRTGVIMANKERKKGQADKKNPLAAMMEEEPESARPEEGKPQDGNPEGDKKAEKKTPDDKHKQPGFQQSHYFVALYRFKALEKDDLDFPPGEKITVIDDSNEEWWRGKIGEKVGFFPPNFIIRVRSGERVHRVTRSFVGNREIGQITLKKDQIVVQKGDEAGGYVKVYTGRKMGLFPTDFLEEI", "length": 353, "header": "tr|I3LLH4-1|I3L5Y5_PIG Computationally mapped isoform of SH3 and cysteine-rich domain-containing protein 3 OS=Sus scrofa OX=9823 GN=STAC3 PE=1 SV=3 CANONICAL=I3L5Y5-1" }, "locus": { "chromosome": "5", "start_pos": 22555010, "end_pos": 22549356, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032244.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032244.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024943.3", "url": "https://www.ensembl.org/id/ENSSSCP00000024943.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LIQ0", "url": "https://www.uniprot.org/uniprotkb/I3LIQ0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ], "pmid": "" }, { "name": "T-tubule", "id": "GO:0030315", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030315", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "skeletal muscle contraction", "id": "GO:0003009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003009", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ], "pmid": "" }, { "name": "positive regulation of protein localization to plasma membrane", "id": "GO:1903078", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903078", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y5", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5Y5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5Y5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5Y5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" }, { "id": "PS50081", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50081" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phorbol-ester/DAG-type", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 140, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L5Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y5" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 247, "end_pos": 306, "start_aa": "Gln", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5U1-1", "uniprot_ac": "I3L5U1", "uniprot_id": "I3L5U1_PIG", "mass": { "chemical_mass": 58882.0, "monoisotopic_mass": 58882.0 }, "refseq": { "ac": "XP_020943532", "name": "lysophospholipid acyltransferase 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943532" }, "gene_names": [ { "name": "MBOAT2", "type": "recommended", "evidence": [ { "id": "I3L5U1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ] }, { "name": "MBOAT2", "type": "synonym", "evidence": [ { "id": "XP_020943532", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943532" } ] } ], "protein_names": [ { "name": "Membrane bound O-acyltransferase domain containing 2", "type": "synonym", "evidence": [ { "id": "I3L5U1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5U1/entry#names_and_taxonomy" } ] }, { "name": "lysophospholipid acyltransferase 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020943532", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943532" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MBOAT2", "url": "https://www.uniprot.org/uniprotkb/I3L5U1", "locus": { "chromosome": "3", "start_pos": 127360057, "end_pos": 127243275, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023539", "url": "https://www.ensembl.org/id/ENSSSCG00000023539" } ] } } ], "crossref": [ { "id": "I3L5U1", "url": "https://alphafold.ebi.ac.uk/entry/I3L5U1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023539", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023539", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623089", "url": "https://www.ncbi.nlm.nih.gov/gene/100623089", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WHGTRPG", "url": "https://omabrowser.org/oma/group/WHGTRPG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR13906", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13906", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13906:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13906:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03062", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03062", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1482788", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482788", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482839", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943532", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943532", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BG62", "url": "https://www.uniprot.org/uniprotkb/A0A287BG62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BG62-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BG62-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5U1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATTSTTGSTLLQPLSNAVQLPIDQVNFVVCQLFALLAAIWFRTYLHSSKTSSCIRHVVATLLGLYLALFCFGWYALHFLVQSGISYCIMMVTGVENMHTYCFVFALGYLTVCQVTRVYIFDYGQYSADFSGPMMIITQKITSLACEIHDGMFRKNEELTPSQRSLAVRRMPSLLEYLSYTCNFMGILAGPLCSYKDYITFIEGRSYHAAQSGESGKEGIQGERTEPSPNAAVVQKLLICGLSLLFHLTICRRLPVEYNIDVHFQATASWPTRVLYLYVSLLAARPKYYFAWTLADAINNAAGFGFRGYDKNGAARWDLISNLRIQQIEMSTSFKMFLDNWNIQTALWLKRVCYERVSTSPTIQTFILSAIWHGVYPGYYLTFLTGTVMTLAARAVRNNFRHYFLQPPQLKLLYDILTWIVTQIAISYTVVPFVLLSVKPSFMFYSSWYYSLHSLGILVLLLLPVKKTPRGKNTHENAQLSRSKKLDEGENSLGQNSFSTTNSVCSQSQEVASRHSSLKH", "length": 520, "header": "tr|I3L5U1-1|I3L5U1_PIG Isoform 1 of Membrane bound O-acyltransferase domain containing 2 OS=Sus scrofa OX=9823 GN=MBOAT2 PE=4 SV=2 CANONICAL=I3L5U1-1" }, "isoforms": [ { "isoform_ac": "A0A287BG62-1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1/entry#A0A287BG62-1", "sequence": { "sequence": "MATTSTTGSTLLQPLSNAVQLPIDQVNFVVCQLFALLAAIWFRTYLHSSKTSSCIRHVVATLLGLYLALFCFGWYALHFLVQSGISYCIMMVTGVENMHTYCFVFALGYLTVCQVTRVYIFDYGQYSADFSGRMPSLLEYLSYTCNFMGILAGPLCSYKDYITFIEGRSYHAAQSGESGKEGIQGERTEPSPNAAVVQKLLICGLSLLFHLTICRRLPVEYNIDVHFQATASWPTRVLYLYVSLLAARPKYYFAWTLADAINNAAGFGFRGYDKNGAARWDLISNLRIQQIEMSTSFKMFLDNWNIQTALWLKRVCYERVSTSPTIQTFILSAIWHGVYPGYYLTFLTGTVMTLAARAVRNNFRHYFLQPPQLKLLYDILTWIVTQIAISYTVVPFVLLSVKPSFMFYSSWYYSLHSLGILVLLLLPVKKTPRGKNTHENAQLSRSKKLDEGENSLGQNSFSTTNSVCSQSQEVASRHSSLKH", "length": 483, "header": "tr|A0A287BG62-1|I3L5U1_PIG Computationally mapped isoform of Membrane bound O-acyltransferase domain containing 2 OS=Sus scrofa OX=9823 GN=MBOAT2 PE=4 SV=1 CANONICAL=I3L5U1-1" }, "locus": { "chromosome": "3", "start_pos": 127359004, "end_pos": 127243940, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000062153.3", "url": "https://www.ensembl.org/id/ENSSSCT00000062153.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000055521.1", "url": "https://www.ensembl.org/id/ENSSSCP00000055521.1" } ] } }, { "isoform_ac": "I3L5U1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1/entry#I3L5U1-1", "sequence": { "sequence": "MATTSTTGSTLLQPLSNAVQLPIDQVNFVVCQLFALLAAIWFRTYLHSSKTSSCIRHVVATLLGLYLALFCFGWYALHFLVQSGISYCIMMVTGVENMHTYCFVFALGYLTVCQVTRVYIFDYGQYSADFSGPMMIITQKITSLACEIHDGMFRKNEELTPSQRSLAVRRMPSLLEYLSYTCNFMGILAGPLCSYKDYITFIEGRSYHAAQSGESGKEGIQGERTEPSPNAAVVQKLLICGLSLLFHLTICRRLPVEYNIDVHFQATASWPTRVLYLYVSLLAARPKYYFAWTLADAINNAAGFGFRGYDKNGAARWDLISNLRIQQIEMSTSFKMFLDNWNIQTALWLKRVCYERVSTSPTIQTFILSAIWHGVYPGYYLTFLTGTVMTLAARAVRNNFRHYFLQPPQLKLLYDILTWIVTQIAISYTVVPFVLLSVKPSFMFYSSWYYSLHSLGILVLLLLPVKKTPRGKNTHENAQLSRSKKLDEGENSLGQNSFSTTNSVCSQSQEVASRHSSLKH", "length": 520, "header": "tr|I3L5U1-1|I3L5U1_PIG Isoform 1 of Membrane bound O-acyltransferase domain containing 2 OS=Sus scrofa OX=9823 GN=MBOAT2 PE=4 SV=2 CANONICAL=I3L5U1-1" }, "locus": { "chromosome": "3", "start_pos": 127359004, "end_pos": 127243940, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026647.3", "url": "https://www.ensembl.org/id/ENSSSCT00000026647.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019391.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019391.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BG62", "url": "https://www.uniprot.org/uniprotkb/A0A287BG62" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1482788", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482788", "resource": "Reactome", "description": "Acyl chain remodelling of PC" }, { "id": "R-SSC-1482839", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "resource": "Reactome", "description": "Acyl chain remodelling of PE" } ], "orthologs": [ { "uniprot_canonical_ac": "F4IDU4-1", "protein_name": "Lysophospholipid acyltransferase 1", "gene_name": "LPCAT1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDMSSMAGSIGVSVAVLRFLLCFVATIPVSFACRIVPSRLGKHLYAAASGAFLSYLSFGFSSNLHFLVPMTIGYASMAIYRPKCGIITFFLGFAYLIGCHVFYMSGDAWKEGGIDSTGALMVLTLKVISCSMNYNDGMLKEEGLREAQKKNRLIQMPSLIEYFGYCLCCGSHFAGPVYEMKDYLEWTEGKGIWDTTEKRKKPSPYGATIRAILQAAICMALYLYLVPQYPLTRFTEPVYQEWGFLRKFSYQYMAGFTARWKYYFIWSISEASIIISGLGFSGWTDDASPKPKWDRAKNVDILGVELAKSAVQIPLVWNIQVSTWLRHYVYERLVQNGKKAGFFQLLATQTVSAVWHGLYPGYMMFFVQSALMIAGSRVIYRWQQAISPKMAMLRNIMVFINFLYTVLVLNYSAVGFMVLSLHETLTAYGSVYYIGTIIPVGLILLSYVVPAKPSRPKPRKEE", "length": 462 }, "evidence": [ { "id": "I3L5U1", "url": "https://omabrowser.org/oma/group/I3L5U1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q08548-1", "protein_name": "Lysophospholipid acyltransferase", "gene_name": "ALE1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYNPVDAVLTKIITNYGIDSFTLRYAICLLGSFPLNAILKRIPEKRIGLKCCFIISMSMFYLFGVLNLVSGFRTLFISTMFTYLISRFYRSKFMPHLNFMFVMGHLAINHIHAQFLNEQTQTTVDITSSQMVLAMKLTSFAWSYYDGSCTSESDFKDLTEHQKSRAVRGHPPLLKFLAYAFFYSTLLTGPSFDYADFDSWLNCEMFRDLPESKKPMRRHHPGERRQIPKNGKLALWKVVQGLAWMILSTLGMKHFPVKYVLDKDGFPTRSFIFRIHYLFLLGFIHRFKYYAAWTISEGSCILCGLGYNGYDSKTQKIRWDRVRNIDIWTVETAQNTREMLEAWNMNTNKWLKYSVYLRVTKKGKKPGFRSTLFTFLTSAFWHGTRPGYYLTFATGALYQTCGKIYRRNFRPIFLREDGVTPLPSKKIYDLVGIYAIKLAFGYMVQPFIILDLKPSLMVWGSVYFYVHIIVAFSFFLFRGPYAKQVTEFFKSKQPKEIFIRKQKKLEKDISASSPNLGGILKAKIEHEKGKTAEEEEMNLGIPPIELEKWDNAKEDWEDFCKDYKEWRNKNGLEIEEENLSKAFERFKQEFSNAASGSGERVRKMSFSGYSPKPISKKEE", "length": 619 }, "evidence": [ { "id": "I3L5U1", "url": "https://omabrowser.org/oma/group/I3L5U1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q3T1J2-1", "protein_name": "Membrane-bound glycerophospholipid O-acyltransferase 2", "gene_name": "Mboat2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATTSTTGSTLLQPLSNAVQLPIDQVNFVVCQLFALLAAVWFRTYLHSSKTSSFIRHVVATLLGLYLAFFCFGWYALHFLVQSGISYCIMIIAGVESMHQCCFVFALGYLSVCQITRVYIFDYGQYSADFSGPMMIITQKITSLAYEIHDGMFRKDEELTPSQRGLAVRRMPSLLEYVSYTCNFMGILAGPLCSYKDYIAFIEGRASHMAQSGENGKEEQHGKAEPSPNAAVTEKLLVCGLSLLFHLTISSMLPVEYNIDEHFQATASWPTKATYLYVSLLAARPKYYFAWTLADAINNAAGFGFRGYDKNGVARWDLISNLRIQQIEMSTSFKMFLDNWNIQTALWLKRVCYERATFSPTVQTFFLSAIWHGVYPGYYLTFLTGVLMTLAARAVRNNFRHYFVEPPQLKLFYDIITWAATQITISYTVVPFVLLSINPSFTFYRSWYYCLHICSILVLLLLPVKKSPRKKNTEENAQPSWAKKFDERENSLGQNSFSMMNNVCNQNQDTGSRHSALTQ", "length": 519 }, "evidence": [ { "id": "I3L5U1", "url": "https://omabrowser.org/oma/group/I3L5U1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54XX2-1", "protein_name": "Membrane bound O-acyl transferase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIDSYLEATGFPVDQVKTVICLLLSYPFAAILKKLPNANLKHIMNICLGVFYCTWSLGEWSWLHSFISSLISYGLLMVIPNRYKPQLIVFAFCLGYLSISHIYRIYTDYMGWTLDFTGPQMILTLKLTSFAWNLHDGSKADNELSDDQKRRSIKKLPTLLEFFGFVYFFPTFLAGPTLEITDYLNYTSGKMFQVGQLNGKAPSSLLPALKTLGLGLLMFPFVVLSGQYPVVYLSTNEFRYEPLLYKLIKLHIFVVLSRFRYYFGWYMSEGSAVLSGIGFNGFEKDGVTMKWDRITNVYPLSVELASNVRDVSNNWNIGTSDWLKRYVYLRLTPAGAKPTFFATLATYTISAFWHGFYPGYYIFFVACTLLTEVAKDMRRKIRPYFVKQNGDVAIQTPLKTVYDIVGSICCVWWLSFFGASFIFLNIERSIHLWNTFSYIPIIILFVTFILLRFVLPTPRSTPRPTKKTN", "length": 469 }, "evidence": [ { "id": "I3L5U1", "url": "https://omabrowser.org/oma/group/I3L5U1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5ZKL6-1", "protein_name": "Membrane-bound glycerophospholipid O-acyltransferase 2", "gene_name": "mboat2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATSTTGSTLLQPLSNAVRLPVDQVNFVVCQLFALLAAIWFRTYLHSSKTSPFIRHVVATLLGLYLALFCFGWYALHFVIQSGISYYLMIIIGVENMHKYCFVFALGYLTVCQITRVYIFDYGQYSADFSGPMMIITQKITSLAFEIHDGMFRKNEDLTPSQRCLAVRRMPSLLEYLSYNCNFMGILAGPLCSYKDYITFIEGRSYQLQQSEANGKEDTKYEQTDPSPNIAVAQKLLICGLSLLFHMTITKTLPVEYNIDENFRATASWPVRVFYLYLSLMAARPKYYFAWTLADAINNAAGFGFRGYDKNGVTRWDLISNLRIQQIESSTSFKMFLDNWNIQTALWLKRVCYERATFSPTIQTFILSAIWHGVYPGYYLTFLTGVLMTLAARAIRNNIRHYFVESPAVKLCYDIITWMTTQVAISYTVVPFVLLSVKPSFTFYSSCYFCLHIASILVLLVFPLKRTQKGNKQHESIQPVWSKKLEEENLLQKNSYSTTNNSFSQKEEITCRYQALKQ", "length": 518 }, "evidence": [ { "id": "I3L5U1", "url": "https://omabrowser.org/oma/group/I3L5U1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6NN55-1", "protein_name": "Lysophospholipid acyltransferase 6", "gene_name": "oys", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLEPPKFIENDCYNGSRTFTWLADMVGLSVDLVNFLICQISALFLASLFRSMLHPSKVSSKLRHTFALSIGLAFGYFCFGQQAIHIAGLPAICYIVIRTQDPRIVQRAVLLVAMSYLLCVHLMRQLYDYGSYALDITGPLMIITQKVTSLAFSIHDGFVRGDEELTKAQQYHAIRKMPSALEYFSYVWHFQSILAGPLVFYKDYIEFVEGYNLLSTPPGNGNLDSSKREVVLEPSPTKAVIRKVVGSLVCAFIFMKFVKIYPVKDMKEDDFMNNTSMVYKYWYAMMATTCIRFKYYHAWLLADAICNNSGLGFTGYDKDGNSKWDLISNINVLSFEFSTNMRDAINNWNCGTNRWLRTLVYERVPQQYGTLLTFALSAVWHGFYPGYYLTFATGAVVVTAARTGRRLFRHRFQSTQVTRMFYDILTCLITRVVLGYATFPFVLLEFMGSIKLYLRFYLCLHIISLVTIFILPKFIRGERRLRTSNGNGNVRLSGSGNTKDAVTTSVESTAALTAGNDLNEDKEEDKHAQCKVHTPTQQQPAAGPHKTTVEQPTEQPNNVNLRSRPQQQQPHLEKKAMPPTCARDAVSVPHDQCEMDQLSSKLKEKIEAETKNIEEFIDKTVTETVSGIVEFKNDLMRDIEFPKLKLPGSNGAISLDSSNGGGLRKRNISSVHDNGTDPGHATADLHPPLEENGAAFLKKEIEVINAVVQQAVPAVLSNGHAK", "length": 722 }, "evidence": [ { "id": "I3L5U1", "url": "https://omabrowser.org/oma/group/I3L5U1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q6ZWT7-1", "protein_name": "Membrane-bound glycerophospholipid O-acyltransferase 2", "gene_name": "MBOAT2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATTSTTGSTLLQPLSNAVQLPIDQVNFVVCQLFALLAAIWFRTYLHSSKTSSFIRHVVATLLGLYLALFCFGWYALHFLVQSGISYCIMIIIGVENMHNYCFVFALGYLTVCQVTRVYIFDYGQYSADFSGPMMIITQKITSLACEIHDGMFRKDEELTSSQRDLAVRRMPSLLEYLSYNCNFMGILAGPLCSYKDYITFIEGRSYHITQSGENGKEETQYERTEPSPNTAVVQKLLVCGLSLLFHLTICTTLPVEYNIDEHFQATASWPTKIIYLYISLLAARPKYYFAWTLADAINNAAGFGFRGYDENGAARWDLISNLRIQQIEMSTSFKMFLDNWNIQTALWLKRVCYERTSFSPTIQTFILSAIWHGVYPGYYLTFLTGVLMTLAARAMRNNFRHYFIEPSQLKLFYDVITWIVTQVAISYTVVPFVLLSIKPSLTFYSSWYYCLHILGILVLLLLPVKKTQRRKNTHENIQLSQSKKFDEGENSLGQNSFSTTNNVCNQNQEIASRHSSLKQ", "length": 520 }, "evidence": [ { "id": "I3L5U1", "url": "https://omabrowser.org/oma/group/I3L5U1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R3I2-1", "protein_name": "Membrane-bound glycerophospholipid O-acyltransferase 2", "gene_name": "Mboat2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTSTTGSTLLQPLSNAVQLPIDQVNFVVCQLFALLAAVWFRTYLHSSKTSSFIRHVVATLLGLYLAFFCFGWYALHFLVQSGISYCIMIIAGVESMQQCCFVFALGYLSVCQITRVYIFDYGQYSADFSGPMMIITQKITSLAYEIHDGMFRKDEELTPSQRGLAVRRMPSLLEYVSYTCNFMGILAGPLCSYKDYIAFIEGRASHVAQPSENGKDEQHGKADPSPNAAVTEKLLVCGLSLLFHLTISNMLPVEYNIDEHFQATASWPTKATYLYVSLLAARPKYYFAWTLADAINNAAGFGFRGYDKNGVARWDLISNLRIQQIEMSTSFKMFLDNWNIQTALWLKRVCYERATFSPTIQTFFLSAIWHGVYPGYYLTFLTGVLMTLAARAVRNNFRHYFLEPPQLKLFYDLITWVATQITISYTVVPFVLLSIKPSFTFYSSWYYCLHVCSILVLLLLPVKKSQRRTSTQENVHLSQAKKFDERDNPLGQNSFSTMNNVCNQNRDTGSRHSSLTQ", "length": 519 }, "evidence": [ { "id": "I3L5U1", "url": "https://omabrowser.org/oma/group/I3L5U1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "acyltransferase activity", "id": "GO:0016746", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016746", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" }, { "name": "1-acylglycerophosphocholine O-acyltransferase activity", "id": "GO:0047184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0047184", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" }, { "name": "1-acylglycerophosphoethanolamine O-acyltransferase activity", "id": "GO:0106262", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106262", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" }, { "name": "1-acylglycerophosphoserine O-acyltransferase activity", "id": "GO:0106263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106263", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "phosphatidylethanolamine acyl-chain remodeling", "id": "GO:0036152", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036152", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" }, { "name": "phosphatidylcholine acyl-chain remodeling", "id": "GO:0036151", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036151", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" }, { "name": "phosphatidylserine acyl-chain remodeling", "id": "GO:0036150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036150", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" }, { "name": "lipid modification", "id": "GO:0030258", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030258", "evidence": [ { "database": "UniProtKB", "id": "I3L5U1", "url": "https://www.uniprot.org/uniprotkb/I3L5U1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5U1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 520, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5U1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5U1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5C8-1", "uniprot_ac": "F2Z5C8", "uniprot_id": "F2Z5C8_PIG", "mass": { "chemical_mass": 20598.0, "monoisotopic_mass": 20598.0 }, "refseq": {}, "gene_names": [ { "name": "SPCS3", "type": "recommended", "evidence": [ { "id": "F2Z5C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8" } ] } ], "protein_names": [ { "name": "Signal peptidase complex subunit 3", "type": "recommended", "evidence": [ { "id": "F2Z5C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Essential component of the signal peptidase complex (SPC) which catalyzes the cleavage of N-terminal signal sequences from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum. Essential for the SPC catalytic activity, possibly by stabilizing and positioning the active center of the complex close to the lumenal surface.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C8", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8#function" }, { "database": "UniProtKB", "id": "ARBA00046080", "url": "https://www.uniprot.org/uniprotkb/ARBA00046080#function" }, { "database": "UniProtKB", "id": "A0A287BQE3", "url": "https://www.uniprot.org/uniprotkb/A0A287BQE3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5C8", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SPCS3", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8", "locus": { "chromosome": "15", "start_pos": 38802635, "end_pos": 38790655, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015769", "url": "https://www.ensembl.org/id/ENSSSCG00000015769" } ] } } ], "crossref": [ { "id": "F2Z5C8", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5C8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015769", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015769", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12804", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12804", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12804:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12804:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04573", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04573", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-422085", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-422085", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9768727", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9768727", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A287BQE3", "url": "https://www.uniprot.org/uniprotkb/A0A287BQE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BQE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BQE3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5C8", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5C8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTVLSRANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADILFRKYFIDFSLQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEITKSY", "length": 182, "header": "tr|F2Z5C8-1|F2Z5C8_PIG Isoform 1 of Signal peptidase complex subunit 3 OS=Sus scrofa OX=9823 GN=SPCS3 PE=1 SV=2 CANONICAL=F2Z5C8-1" }, "isoforms": [ { "isoform_ac": "A0A287BQE3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8/entry#A0A287BQE3-1", "sequence": { "sequence": "MNTVLSRANSLFAFSLNRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADILFRKYFIDFSLQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEITKSY", "length": 165, "header": "tr|A0A287BQE3-1|F2Z5C8_PIG Computationally mapped isoform of Signal peptidase complex subunit 3 OS=Sus scrofa OX=9823 GN=SPCS3 PE=1 SV=3 CANONICAL=F2Z5C8-1" }, "locus": { "chromosome": "15", "start_pos": 38799304, "end_pos": 38790775, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000053880.3", "url": "https://www.ensembl.org/id/ENSSSCT00000053880.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058651.3", "url": "https://www.ensembl.org/id/ENSSSCP00000058651.3" } ] } }, { "isoform_ac": "F2Z5C8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8/entry#F2Z5C8-1", "sequence": { "sequence": "MNTVLSRANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADILFRKYFIDFSLQLFLYLSAEYSTKNNALNQVVLWDKIVLRGDNPKLLLKDMKTKYFFFDDGNGLKGNRNVTLTLSWNVVPNAGILPLVTGSGHVSVPFPDTYEITKSY", "length": 182, "header": "tr|F2Z5C8-1|F2Z5C8_PIG Isoform 1 of Signal peptidase complex subunit 3 OS=Sus scrofa OX=9823 GN=SPCS3 PE=1 SV=2 CANONICAL=F2Z5C8-1" }, "locus": { "chromosome": "15", "start_pos": 38799304, "end_pos": 38790775, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017170.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017170.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016709.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016709.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BQE3", "url": "https://www.uniprot.org/uniprotkb/A0A287BQE3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-422085", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-422085", "resource": "Reactome", "description": "Synthesis, secretion, and deacylation of Ghrelin" }, { "id": "R-SSC-9768727", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9768727", "resource": "Reactome", "description": "Regulation of CDH1 posttranslational processing and trafficking to plasma membrane" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "signal peptide processing", "id": "GO:0006465", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006465", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C8", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8" } ], "pmid": "" }, { "name": "viral protein processing", "id": "GO:0019082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019082", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C8", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8" } ], "pmid": "" }, { "name": "protein targeting to ER", "id": "GO:0045047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045047", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C8", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "signal peptidase complex", "id": "GO:0005787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005787", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C8", "url": "https://www.uniprot.org/uniprotkb/F2Z5C8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 143, "end_pos": 145, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5C8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 182, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5C8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5C8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 143, "end_pos": 145 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQW2-1", "uniprot_ac": "F1SQW2", "uniprot_id": "F1SQW2_PIG", "mass": { "chemical_mass": 86030.0, "monoisotopic_mass": 86030.0 }, "refseq": { "ac": "XP_005670156", "name": "sentrin-specific protease 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670156" }, "gene_names": [ { "name": "SENP5", "type": "recommended", "evidence": [ { "id": "F1SQW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ] }, { "name": "SENP5", "type": "synonym", "evidence": [ { "id": "XP_005670156", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670156" } ] } ], "protein_names": [ { "name": "SUMO specific peptidase 5", "type": "synonym", "evidence": [ { "id": "F1SQW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQW2/entry#names_and_taxonomy" } ] }, { "name": "sentrin-specific protease 5", "type": "synonym", "evidence": [ { "id": "XP_005670156", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670156" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SENP5", "url": "https://www.uniprot.org/uniprotkb/F1SQW2", "locus": { "chromosome": "13", "start_pos": 133193252, "end_pos": 133269447, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011841", "url": "https://www.ensembl.org/id/ENSSSCG00000011841" } ] } } ], "crossref": [ { "id": "F1SQW2", "url": "https://alphafold.ebi.ac.uk/entry/F1SQW2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011841", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011841", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100526077", "url": "https://www.ncbi.nlm.nih.gov/gene/100526077", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526077", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526077", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQW2", "url": "https://www.orthodb.org/?gene=F1SQW2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12606", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12606", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12606:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12606:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02902", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02902", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19722", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19722", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3065679", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3065679", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005670156", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005670156", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A287BTL3", "url": "https://www.uniprot.org/uniprotkb/A0A287BTL3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A287BTL3-1", "url": "https://www.uniprot.org/uniprotkb/A0A287BTL3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQW2-1", "url": "https://www.uniprot.org/uniprotkb/F1SQW2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKQKKILWRKGIHLAFSERWNTGFGSFKKFCFHQHLCILKAKLGRPVTWSRHLRHFQCRKKALQIQKKWIQHEPLFARTKSNVAAQNLRTLSSKVKRKGTKNLSSSSRTVLKLQAEKLLSSAKNSDHEYCGEKSFLKAVADLPENSVLGQANGHRSRTEPQASGFPMKFSGETPSPGESGTIVVTLSNHKRKGFCYGCCQRPEHRRNGGRLIPKKFHLNQHRRIKVSPHMMYEKLSMIRFRYRILRSQHFRAKNKVCKLKKAQRSWVQVTGDHQETLRENGEGGTCSPFPSSEPKDPSCRHQPYLPDMDSGAVVKGKNSHVPDGHTKGSPLLGKELSLGEAFPDQQNGNATYTWDQSPCSSPKWECTELIHDIPLPEHHSSNAFISEAEREALSQENQTSTVSDDRVKLSMSGADPPVSSVDGPVSEETVHNESSCQMDEDGSLKQNILSSKLLDHPYCKSPLEAPLTCSGLKLENQVGGGKNSQKASPVDDEQLSICLSGFLDEVMKKYGSLVPLSEKDVLGRLKDVFNEDFSNRKPFINREITNYRARHQKCNFRVFYNKHMLDMDDLATLDGQNWLNDQVINMYGELIMDAVPDKVHFFNSFFHRQLVTKGYNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITVTLSNRIISFYDSQGIHFKFCVENIRKYLLTEAREKNRPEFLQGWQTAVTKCIPQQKNDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRIYKELCECRLMD", "length": 752, "header": "tr|F1SQW2-1|F1SQW2_PIG Isoform 1 of SUMO specific peptidase 5 OS=Sus scrofa OX=9823 GN=SENP5 PE=3 SV=2 CANONICAL=F1SQW2-1" }, "isoforms": [ { "isoform_ac": "A0A287BTL3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQW2/entry#A0A287BTL3-1", "sequence": { "sequence": "MKKQKKILWRKGIHLAFSERWNTGFGSFKKFCFHQHLCILKAKLGRPVTWSRHLRHFQCRKKALQIQKKWIQHEPLFARTKSNVAAQNLRTLSSKVKRKGTKNLSSSSRTVLKLQAEKLLSSAKNSDHEYCGEKSFLKAVADLPENSVLGQANGHRSRTEPQASGFPMKFSGETPSPGESGTIVVTLSNHKRKGFCYGCCQRPEHRRNGGRLIPKKFHLNQHRRIKVSPHMMYEKLSMIRFRYRILRSQHFRAKNKVCKLKKAQRSWVQVTGDHQETLRENGEGGTCSPFPSSEPKDPSCRHQPYLPDMDSGAVVKGKNSHVPDGHTKGSPLLGKELSLGEAFPDQQNGNATYTWDQSPCSSPKWECTELIHDIPLPEHHSSNAFISEAEREALSQENQTSTVSDDRVKLSMSGADPPVSSVDGPVSEETVHNESSCQMDEDGSLKQNILSSKLLDHPYCKSPLEAPLTCSGLKLENQVGGGKNSQKASPVDDEQLSICLSGFLDEVMKKYGSLVPLSEKDVLGRLKDVFNEDFSNRKPFINREITNYRARHQKCNFRVFYNKHMLDMDDLATLDGQNWLNDQVINMYGELIMDAVPDKVHFFNSFFHRQLVTKGYNGVKRWTKKNIRKYLLTEAREKNRPEFLQGWQTAVTKCIPQQKNDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRIYKELCECRLMD", "length": 706, "header": "tr|A0A287BTL3-1|F1SQW2_PIG Computationally mapped isoform of SUMO specific peptidase 5 OS=Sus scrofa OX=9823 GN=SENP5 PE=3 SV=1 CANONICAL=F1SQW2-1" }, "locus": { "chromosome": "13", "start_pos": 133248507, "end_pos": 133196352, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000045174.2", "url": "https://www.ensembl.org/id/ENSSSCT00000045174.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059588.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059588.2" } ] } }, { "isoform_ac": "F1SQW2-1", "url": "https://www.uniprot.org/uniprotkb/F1SQW2/entry#F1SQW2-1", "sequence": { "sequence": "MKKQKKILWRKGIHLAFSERWNTGFGSFKKFCFHQHLCILKAKLGRPVTWSRHLRHFQCRKKALQIQKKWIQHEPLFARTKSNVAAQNLRTLSSKVKRKGTKNLSSSSRTVLKLQAEKLLSSAKNSDHEYCGEKSFLKAVADLPENSVLGQANGHRSRTEPQASGFPMKFSGETPSPGESGTIVVTLSNHKRKGFCYGCCQRPEHRRNGGRLIPKKFHLNQHRRIKVSPHMMYEKLSMIRFRYRILRSQHFRAKNKVCKLKKAQRSWVQVTGDHQETLRENGEGGTCSPFPSSEPKDPSCRHQPYLPDMDSGAVVKGKNSHVPDGHTKGSPLLGKELSLGEAFPDQQNGNATYTWDQSPCSSPKWECTELIHDIPLPEHHSSNAFISEAEREALSQENQTSTVSDDRVKLSMSGADPPVSSVDGPVSEETVHNESSCQMDEDGSLKQNILSSKLLDHPYCKSPLEAPLTCSGLKLENQVGGGKNSQKASPVDDEQLSICLSGFLDEVMKKYGSLVPLSEKDVLGRLKDVFNEDFSNRKPFINREITNYRARHQKCNFRVFYNKHMLDMDDLATLDGQNWLNDQVINMYGELIMDAVPDKVHFFNSFFHRQLVTKGYNGVKRWTKKVDLFKKSLLLIPIHLEVHWSLITVTLSNRIISFYDSQGIHFKFCVENIRKYLLTEAREKNRPEFLQGWQTAVTKCIPQQKNDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRIYKELCECRLMD", "length": 752, "header": "tr|F1SQW2-1|F1SQW2_PIG Isoform 1 of SUMO specific peptidase 5 OS=Sus scrofa OX=9823 GN=SENP5 PE=3 SV=2 CANONICAL=F1SQW2-1" }, "locus": { "chromosome": "13", "start_pos": 133248507, "end_pos": 133196352, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012953.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012953.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012612.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012612.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A287BTL3", "url": "https://www.uniprot.org/uniprotkb/A0A287BTL3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100526077", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526077", "resource": "KEGG Pathway" }, { "id": "R-SSC-3065679", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3065679", "resource": "Reactome", "description": "SUMO is proteolytically processed" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ], "pmid": "" }, { "name": "presynaptic cytosol", "id": "GO:0099523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099523", "evidence": [ { "database": "UniProtKB", "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ], "pmid": "" }, { "name": "postsynaptic cytosol", "id": "GO:0099524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099524", "evidence": [ { "database": "UniProtKB", "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ], "pmid": "" }, { "name": "protein desumoylation", "id": "GO:0016926", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016926", "evidence": [ { "database": "UniProtKB", "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cysteine-type peptidase activity", "id": "GO:0008234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008234", "evidence": [ { "database": "UniProtKB", "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ], "pmid": "" }, { "name": "deSUMOylase activity", "id": "GO:0016929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016929", "evidence": [ { "database": "UniProtKB", "id": "F1SQW2", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 433, "end_pos": 435, "annotation": "n_glycosylation_sequon" }, { "start_pos": 706, "end_pos": 708, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQW2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 752, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQW2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQW2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQW2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQW2" }, { "id": "PS50600", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50600" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like protease family profile", "eco_id": "ECO_0000259", "start_pos": 564, "end_pos": 721, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 350, "end_pos": 352 }, { "start_pos": 398, "end_pos": 400 }, { "start_pos": 433, "end_pos": 435 }, { "start_pos": 706, "end_pos": 708 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS82-1", "uniprot_ac": "F1SS82", "uniprot_id": "F1SS82_PIG", "mass": { "chemical_mass": 44932.0, "monoisotopic_mass": 44932.0 }, "refseq": { "ac": "XP_020944299", "name": "HORMA domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944299" }, "gene_names": [ { "name": "HORMAD1", "type": "recommended", "evidence": [ { "id": "F1SS82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ] }, { "name": "HORMAD1", "type": "synonym", "evidence": [ { "id": "XP_020944299", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944299" } ] } ], "protein_names": [ { "name": "HORMA domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "F1SS82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS82/entry#names_and_taxonomy" } ] }, { "name": "HORMA domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020944299", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944299" } ] } ], "function": [ { "annotation": "Plays a key role in meiotic progression. Regulates 3 different functions during meiosis: ensures that sufficient numbers of processed DNA double-strand breaks (DSBs) are available for successful homology search by increasing the steady-state numbers of single-stranded DSB ends. Promotes synaptonemal-complex formation independently of its role in homology search. Plays a key role in the male mid-pachytene checkpoint and the female meiotic prophase checkpoint: required for efficient build-up of ATR activity on unsynapsed chromosome regions, a process believed to form the basis of meiotic silencing of unsynapsed chromatin (MSUC) and meiotic prophase quality control in both sexes.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1SEN4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEN4#function" }, { "database": "UniProtKB", "id": "ARBA00045323", "url": "https://www.uniprot.org/uniprotkb/ARBA00045323#function" }, { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82#function" }, { "database": "UniProtKB", "id": "A0A8D1UB29", "url": "https://www.uniprot.org/uniprotkb/A0A8D1UB29#function" }, { "database": "UniProtKB", "id": "A0A4X1SEN8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEN8#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HORMAD1", "url": "https://www.uniprot.org/uniprotkb/F1SS82", "locus": { "chromosome": "4", "start_pos": 98469650, "end_pos": 98449891, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006649", "url": "https://www.ensembl.org/id/ENSSSCG00000006649" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006649", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006649", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100499502", "url": "https://www.ncbi.nlm.nih.gov/gene/100499502", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003511", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003511", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036570", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036570", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051294", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051294", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IFQNKMV", "url": "https://omabrowser.org/oma/group/IFQNKMV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SS82", "url": "https://www.orthodb.org/?gene=F1SS82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48225", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48225", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48225:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48225:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02301", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02301", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020944299", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020944299", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1SEN4", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SEN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEN4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SEN8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1SEN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1SEN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1UB29", "url": "https://www.uniprot.org/uniprotkb/A0A8D1UB29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1UB29-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1UB29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS82-1", "url": "https://www.uniprot.org/uniprotkb/F1SS82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATAQLQRTSMSALVFPNKISTEQQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFKYTSNGPIMDFISKNQSSESSMSSADTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVPTPFHTFKVKVTTEKERMENIDSGILSPKQIKTPLQKILMDKDDLEDEQEHYINDDFDIETKMEEQKKKLGSSELGEPNLVCEEDEIMRSKESPELSISHSQVEQLVSKTSELDVSESKTRSGKIFQNKMANGNQQIKSKESRKRSQLESGKTVLHHFDSSSQDSVPKRRKFSEPKEHI", "length": 394, "header": "tr|F1SS82-1|F1SS82_PIG Isoform 1 of HORMA domain-containing protein 1 OS=Sus scrofa OX=9823 GN=HORMAD1 PE=4 SV=1 CANONICAL=F1SS82-1" }, "isoforms": [ { "isoform_ac": "A0A4X1SEN4-1", "url": "https://www.uniprot.org/uniprotkb/F1SS82/entry#A0A4X1SEN4-1", "sequence": { "sequence": "MATAQLQRTSMSALVFPNKISTEQQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYVYTNPEDPQTISECYQFKFKYTSNGPIMDFISKNQSSESSMSSADTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVPTPFHTFKVKVTTEKERMENIDSGILSPKQIKTPLQKILMDKDDLEDEQEHYINDDFDIETKMEEQKKKLGSSELGEPNLVCEEDEIMRSKESPELSISHSQVEQLVSKTSELDVSESKTRSGKIFQNKMANGNQQIKSKESRKRSQLESGKTVLHHFDSSSQDSVPKRRKFSEPKEHI", "length": 387, "header": "tr|A0A4X1SEN4-1|F1SS82_PIG Computationally mapped isoform of HORMA domain-containing protein 1 OS=Sus scrofa OX=9823 GN=HORMAD1 PE=4 SV=1 CANONICAL=F1SS82-1" }, "locus": { "chromosome": "4", "start_pos": 98469057, "end_pos": 98450824, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083669.1", "url": "https://www.ensembl.org/id/ENSSSCT00000083669.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068293.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068293.1" } ] } }, { "isoform_ac": "A0A4X1SEN8-1", "url": "https://www.uniprot.org/uniprotkb/F1SS82/entry#A0A4X1SEN8-1", "sequence": { "sequence": "MCLWNKIPRWMLGCYDALQKKYLRMVVLATISECYQFKFKYTSNGPIMDFISKNQSSESSMSSADTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVPTPFHTFKVKVTTEKERMENIDSGILSPKQIKTPLQKILMDKDDLEDEQEHYINDDFDIETKMEEQKKKLGSSELGEPNLVCEEDEIMRSKESPELSISHSQVEQLVSKTSELDVSESKTRSGKIFQNKMANGNQQIKSKESRKRSQLESGKTVLHHFDSSSQDSVPKRRKFSEPKEHI", "length": 314, "header": "tr|A0A4X1SEN8-1|F1SS82_PIG Computationally mapped isoform of HORMA domain-containing protein 1 OS=Sus scrofa OX=9823 GN=HORMAD1 PE=4 SV=1 CANONICAL=F1SS82-1" }, "locus": { "chromosome": "4", "start_pos": 98469057, "end_pos": 98451927, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000078337.1", "url": "https://www.ensembl.org/id/ENSSSCT00000078337.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071008.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071008.1" } ] } }, { "isoform_ac": "A0A8D1UB29-1", "url": "https://www.uniprot.org/uniprotkb/F1SS82/entry#A0A8D1UB29-1", "sequence": { "sequence": "IALVFPNKISTEQQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYVSQYLFFFPITISECYQFKFKYTSNGPIMDFISKNQSSESSMSSADTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVPTPFHTFKVKVTTEKERMENIDSGILSPKQIKTPLQKILMDKDDLEDEQEHYINDDFDIETKMEEQKKKLGSSELGEPNLVCEEDEIMRSKESPELSISHSQVEQLVSKTSELDVSESKTRSGKIFQNKMANGNQQIKSKESRKRSQLESGKTVLHHFDSSSQDSVPKRRKFSEPKEHI", "length": 377, "header": "tr|A0A8D1UB29-1|F1SS82_PIG Computationally mapped isoform of HORMA domain-containing protein 1 OS=Sus scrofa OX=9823 GN=HORMAD1 PE=4 SV=1 CANONICAL=F1SS82-1" }, "locus": { "chromosome": "4", "start_pos": 98469057, "end_pos": 98451525, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091432.1", "url": "https://www.ensembl.org/id/ENSSSCT00000091432.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065282.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065282.1" } ] } }, { "isoform_ac": "F1SS82-1", "url": "https://www.uniprot.org/uniprotkb/F1SS82/entry#F1SS82-1", "sequence": { "sequence": "MATAQLQRTSMSALVFPNKISTEQQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFKYTSNGPIMDFISKNQSSESSMSSADTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVPTPFHTFKVKVTTEKERMENIDSGILSPKQIKTPLQKILMDKDDLEDEQEHYINDDFDIETKMEEQKKKLGSSELGEPNLVCEEDEIMRSKESPELSISHSQVEQLVSKTSELDVSESKTRSGKIFQNKMANGNQQIKSKESRKRSQLESGKTVLHHFDSSSQDSVPKRRKFSEPKEHI", "length": 394, "header": "tr|F1SS82-1|F1SS82_PIG Isoform 1 of HORMA domain-containing protein 1 OS=Sus scrofa OX=9823 GN=HORMAD1 PE=4 SV=1 CANONICAL=F1SS82-1" }, "locus": { "chromosome": "4", "start_pos": 98469057, "end_pos": 98450824, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007285.3", "url": "https://www.ensembl.org/id/ENSSSCT00000007285.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007090.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007090.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1UB29", "url": "https://www.uniprot.org/uniprotkb/A0A8D1UB29" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MAI1-1", "protein_name": "HORMA domain-containing protein 1", "gene_name": "Hormad1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MATMQLRRTASMSALVFPNKISTEHQSLMFVKRLLAVSVSCITYLRGIFPERAYGTRYLDDLCVKILKEDKNCPGSSQLVKWMLGCYDALQKKYLRMIILAVYTNPEDPRTISECYQFKFKYTKNGPIMDFISKNQNNRSSATSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFDGNPTYLNVGEVPTPFHTFRLKVTTEKDRMENIDSTILTPKQSKIPFRKILMDKDDGEDENHNNFDIKTKMDEQKENLGASEIKEPNLDCKGEEIMQLKKNPSPSITHCQVEQLVSKTSELDVSESKTRSGKIFQSKMVNGSQQGQTSKEYRKRSLRQPVKTVLHFSESSSEESSTKRKRVSEPKEHT", "length": 392 }, "evidence": [ { "id": "F1SS82", "url": "https://omabrowser.org/oma/group/F1SS82/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V1AK25-1", "protein_name": "HORMA domain-containing protein 1", "gene_name": "HORMAD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATAQKPKNCVSAVVFPNKIHTEQQSLTLVKRLLAVAVSCITYLRGIFPESAYGTRYLDDLSVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTHPDDPQTITECYHFKFKYAPNGPVLNFSSKNKQSDSPISCADTKKASILLIRKIYVLMQNLGPLPNNVCLTMKLFYYDEVTPPDYQPPGFKEGECEGMIFEGEPMYLNMGEVPTPFHMLKVKVTTDKQRIESCDESILKQREPNLPLPVLTVDGDEAEESQHMKEDPVLDNKAGDGDHADAMEAQEEDFPCGKDGVLKTGENRNQCISSPQVDHLARKTSELNVSESRTRSGKLFQAYIVHQAELSSSQDVLPKRRKISEPKEQF", "length": 368 }, "evidence": [ { "id": "F1SS82", "url": "https://omabrowser.org/oma/group/F1SS82/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A2BF66-1", "protein_name": "HORMA domain-containing protein 1", "gene_name": "hormad1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTCEQKSRPVQSCQMLPDVVSNEQQSLVLVKKLLAIAISSITYLRGLFSEKAYGRKYVGELKVYILREDSCPGAQQIVHWLQGCFDALQRRYLRMVLLSIYCDPDNPQKVTECYQFKIKYTEKGPQMDFESKNGQSLTKMACDNTQKSSMLLVRKLYMLMQNLGPLPDDVCLNMKLLYYDEVTPQEYQPPGFKEDDNGTLMFEREPVNLTMGEVVTPFHSIKMNVTTEKKRIEPFEDDVEVCVSTKWSLKISEDGMMSETSVQQECMTKENVITDAGIEYSETQETQEQPHRHTKEDFSTNPKMDNLVKKTADLKVDARKTRSGRIFEPQISQLEFPLSQDPQPSVPKRRKVSVPK", "length": 356 }, "evidence": [ { "id": "F1SS82", "url": "https://omabrowser.org/oma/group/F1SS82/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZWE7-1", "protein_name": "HORMA domain-containing protein 1", "gene_name": "Hormad1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATMQLRRTASMSALVFPNKISTEQQSLMFVKRLLAVSVSCITYLRGIFPERAYGTRYLDDLCVKILKEDKNCPGSSQLVKWMLGCYDALQKKYLRMIILAVYTNPEDPQTISECYQFKFKYTKNGPIMDFISKNQNNKSSTTSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFDGDPTYLNVGEVPTPFHTFRLKVTTEKERMENIDSAILTPKDSKIPFQKILMDKDDVEDENHNNFDIKTKMNEQNENSGTSEIKEPNLDCKEEEIMQFKKNQSSSISQCQVEQLISKTSELDVSESKTRSGKIFQCKMVNGNQQGQISKENRKRSLRQSGKTVLHILESSSQESVLKRRRVSEPNEHT", "length": 392 }, "evidence": [ { "id": "F1SS82", "url": "https://omabrowser.org/oma/group/F1SS82/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KIY6-1", "protein_name": "HORMA domain-containing protein 1", "gene_name": "HORMAD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATAQLQRTSMSALIFPNKISTEQQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALHKKYLRMVVLAVYTNPEDPQTISECYQFKFKYTSNGPVMDFTSKNQSNEPNMSSADTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVPTPFHTFKVKVTTERERMENIGSGILSPKQLKTPLQKILTDKDDLEDDQEHYISDEFDTETKMEEQEKNPGCSVRREAGFICEEDEMKSKGSPDFSISHSQVEQLVSKTSELDVSESKTRSGKIFQNKMANGNQQVKSKENRKRTQLESGKTVLHPFDSSSQESVPKRRKFSEPKERI", "length": 393 }, "evidence": [ { "id": "F1SS82", "url": "https://omabrowser.org/oma/group/F1SS82/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q86X24-1", "protein_name": "HORMA domain-containing protein 1", "gene_name": "HORMAD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATAQLQRTPMSALVFPNKISTEHQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFKYTNNGPLMDFISKNQSNESSMLSTDTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGRIVLHHFDSSSQESVPKRRKFSEPKEHI", "length": 394 }, "evidence": [ { "id": "F1SS82", "url": "https://omabrowser.org/oma/group/F1SS82/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D5T7-1", "protein_name": "HORMA domain-containing protein 1", "gene_name": "Hormad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATMQLQRTASLSALVFPNKISTEHQSLMFVKRLLAVSVSCITYLRGIFPERAYGTRYLDDLCVKILKEDKNCPGSSQLVKWMLGCYDALQKKYLRMIILAVYTNPGDPQTISECYQFKFKYTKNGPIMDFISKNQNNKSSTTSADTKKASILLIRKIYVLMQNLGPLPNDVCLTMKLFYYDEVTPPDYQPPGFKDGDCEGVIFDGDPTYLNVGEVPTPFHTFRLKVTTEKERMENIDSTILKPKESKTQFEKILMDKDDVEDENHNNFDIKTKMNEQNENSGASEIKEPNLDCKEEETMQFKKSQSPSISHCQVEQLVSKTSELDVSESKTRSGKIFQSKMVNGNNQQGQTSKENRKRSLRQFRKTVLHVLESSQESVLKKRRVSEPKEHT", "length": 392 }, "evidence": [ { "id": "F1SS82", "url": "https://omabrowser.org/oma/group/F1SS82/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "synaptonemal complex", "id": "GO:0000795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000795", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 9, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "oogenesis", "id": "GO:0048477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048477", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "meiotic cell cycle", "id": "GO:0051321", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051321", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "meiotic recombination checkpoint signaling", "id": "GO:0051598", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051598", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "regulation of homologous chromosome segregation", "id": "GO:0060629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060629", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "synaptonemal complex assembly", "id": "GO:0007130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007130", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "meiotic DNA double-strand break formation", "id": "GO:0042138", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042138", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "blastocyst development", "id": "GO:0001824", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001824", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" }, { "name": "meiotic sister chromatid cohesion", "id": "GO:0051177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051177", "evidence": [ { "database": "UniProtKB", "id": "F1SS82", "url": "https://www.uniprot.org/uniprotkb/F1SS82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS82" }, { "id": "PS50815", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50815" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HORMA", "eco_id": "ECO_0000259", "start_pos": 24, "end_pos": 226, "start_aa": "Gln", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L568-1", "uniprot_ac": "I3L568", "uniprot_id": "I3L568_PIG", "mass": { "chemical_mass": 279819.0, "monoisotopic_mass": 279819.0 }, "refseq": { "ac": "XP_001929443", "name": "centrosome-associated protein CEP250 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929443" }, "gene_names": [ { "name": "CEP250", "type": "recommended", "evidence": [ { "id": "I3L568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ] }, { "name": "CEP250", "type": "synonym", "evidence": [ { "id": "XP_001929443", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929443" } ] } ], "protein_names": [ { "name": "Centrosomal protein 250", "type": "synonym", "evidence": [ { "id": "I3L568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L568/entry#names_and_taxonomy" } ] }, { "name": "centrosome-associated protein CEP250 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001929443", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929443" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CEP250", "url": "https://www.uniprot.org/uniprotkb/I3L568", "locus": { "chromosome": "17", "start_pos": 38867203, "end_pos": 38810522, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021138", "url": "https://www.ensembl.org/id/ENSSSCG00000021138" } ] } } ], "crossref": [ { "id": "ENSSSCG00000021138", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021138", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100151840", "url": "https://www.ncbi.nlm.nih.gov/gene/100151840", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR055167", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055167", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057658", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057658", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100151840", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151840", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L568", "url": "https://www.orthodb.org/?gene=I3L568", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23159:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23159:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15035", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15035", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25774", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25774", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2565942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380259", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380284", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001929443", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929443", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1T947", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T947", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1T947-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T947-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L568-1", "url": "https://www.uniprot.org/uniprotkb/I3L568-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METGRPRLNNMKPQPLQLVLEEQVLALQQQMAENQAASWRKLKSSQEAQQRQATLVRKLQAKVLQYRSWSQELEKRLEATGAPIPQRWENVEEPNLEQLLIRLEEEQQRCESLAEVNTQLRLHMEKADVVNKALREDVEKLTVDWSQARDELMRKESQWQMEQEFFKGYLKGEHGRLLSLWREVVTFRRHFLEMKSATDRDLMELKAEHVKLSGSLLTCCLRLTVGAPQARESTGSGRLNGSEPSQLMLLLSKTQELEKEAHKRSQELIQLKSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMVKALRETMKILEANHAELMEHEASLSRNAQEERLSLQQVIKDITQAMVEEGDHMAQGSGHEHSLDLDPSGFFSQFDSQQPDKALTLVRSVLTQRRQAVQDLKQQLSGCQEAVSSLQQQHHQWEEEGEALRQRLQKLTGERDTLAGQTVGLQGEVDSLSRERELLQKTREELQQQLEVLEQEAWRLRRTNMELQLQGDSAQGEKEEQQEELHLAVRERERLQEMLASLEAKQSESLSELITLREALESSRLEGELLRQEQTEVTAVLAKAEQSIVELSSSENSLKAEVADLRAAAVKLSALNEALALDKVGLNQQLLQLEQQNQSVCSRMEAAEQARSALQVGLAEVERSREALWEKNTYLEAQLQKAEAARAELQADLRGVQEEKEEIQEKLSEAHHQQEAVSVQMEQLRQEAKRQEEVLAREVQEKEALVREKAALEVRLQAVERDRQDLSEQLLGLSSAKELLENSLFEAQQQNSLIEVTKGQLEVQIQTITQAKEVIQGEVRCLQLELDTERSRAEQERDAATKQLAQAEQEGQTALQQQKSAHEEEVKGLQEKWEKERAWHQQELDKALKSLEREKTELEMRLREQQAETEAMRTQREEERAEAESTLRQMQLETEKERMSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQETTGMLQTQLREAQKELEQAAQQHRDSLAALQEEGRALLQDKIDLHKQVEDLKSQLVSKEDSQRLVDQEVQEKLREAQECSRIQKELEKEKASLTLLLVEKEQRLLGLQEADSIRQQELSSLRQDMQEAQAGQKELSAQVELLKQEVKAKETDFLAQEARLLEELEASQVTEQQLRASLWAQEAKAAQLQLRLRSTESQLEVLLAEQQPGHQAQAQLASLCAVLQQALGSVCESRPELSGGGDSAPSLWGPEPDQNGARTLFKRGPLLTALSAEAVASALHKLNQDLWKTQQARDDLRDQAQKLGQRLTETEAEKSQLHTELQALQRQLSQNQEERSKWEGKQTSLESELVELHETVTSLQSRLRQAELQGIEAQNEQELLQAAKENLTAQVEHLQAAVAEARAQASAAEVLEEDLKTARSALKLKSKEVESERERAQALQEQGELKVAQGKALQENLARLTQTLSEREGEVETLQGKIQELEKQREMQKAALEVLSLDLKKRNQEVDLQQEQIQELEECRSVLEHLPMAVQEREQKLTLQREQIKELEKDRETQRNILEHQLLELEKKAQVIESQKGQIQDLKKQLVTLECLALELEENHHKIECQQKTIEELEGQREMQRAALTHLTLDLEERSQELQVQGSQIRELESHNSLLARELQEKDQEMTSQQDQTEELQRQKEHLTQDLKRREQEIVLLKERIQVLEDQRTLQTKILEEDLEQIKMSLRERGRDLASQRQLMQERAEEGKGQSKAQRGSLEHMKLILRDKEKEVECQQEHIQELQEHKAQLEQQLQGLHRKMGETSLLLTQREQEIVALQRHLQEAREQGELKEQSLQGQLEEAQRALARRDQELKALQQQQAQGQEENVMEKAGLLQRELEQAHVTLKERQAELEDYKEHVRRLQEELAVEGQRVQALEEVLSDLRAESREQEKALLALQQQCAEQAQEHEAEARALQDSWLQAEAMLKERDQELEALRAEGLSSQHREEAACGQVEALQEALSKAQADLQEKEQHLLGQVELSRSLEASTATLQAALDSCQAQSRQLEEALRKREGEVQVRDLRYQEAMQQLQQALTQRDEELRQQRKQGQLLEKSLAQRGQEDATQEKQEAKHEREEEEIRSLRESLQELQLTLAQKEEEILELREAQQRKSLEDLSHKGCPGKEPATTFDSLGPRLQRELERLQAALKQTEAREIEWREKAQDLALSLAQSKASVSDLQEVALFLQASVLERDSEQQRLQDELELTKLTLEKERLHSPGPSSRAERGPRGEPGVQLGEVSGVKTEPSPEMEERQLWEQRLEHLQRAVALLEVDRSQLQQHNAQLRTTLEQVERERRKLKRGSMRALRAGDLESGEATAPSPMQQDGRGRQKGCSDAKHMVELQKEVALLRAQLALERKQKQDYIARSVQTSRELADLHHGLSHSLLAVAQAPEATVLEAETRKLDESLTQSLTSPGPALLCPSSSAAQTASR", "length": 2440, "header": "tr|I3L568-1|I3L568_PIG Isoform 1 of Centrosomal protein 250 OS=Sus scrofa OX=9823 GN=CEP250 PE=4 SV=3 CANONICAL=I3L568-1" }, "isoforms": [ { "isoform_ac": "A0A4X1T947-1", "url": "https://www.uniprot.org/uniprotkb/I3L568/entry#A0A4X1T947-1", "sequence": { "sequence": "METGRPRLNNMKPQPLQLVLEEQVLALQQQMAENQAASWRKLKSSQEAQQRQATLVRKLQAKVLQYRSWSQELEKRLEATGAPIPQRWENVEEPNLEQLLIRLEEEQQRCESLAEVNTQLRLHMEKADVVNKALREDVEKLTVDWSQARDELMRKESQWQMEQEFFKGYLKGEHGRLLSLWREVVTFRRHFLEMKSATDRDLMELKAEHVKLSGSLLTCCLRLTVGAPQARESTGSGRLNGSEPSQLMLLLSKTQELEKEAHKRSQELIQLKSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMVKALRETMKILVHDPLFWGGVGCGPVASSSMDRK", "length": 340, "header": "tr|A0A4X1T947-1|I3L568_PIG Computationally mapped isoform of Centrosomal protein 250 OS=Sus scrofa OX=9823 GN=CEP250 PE=4 SV=1 CANONICAL=I3L568-1" }, "locus": { "chromosome": "17", "start_pos": 38827508, "end_pos": 38821671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028153.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028153.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025701.4", "url": "https://www.ensembl.org/id/ENSSSCP00000025701.4" } ] } }, { "isoform_ac": "I3L568-1", "url": "https://www.uniprot.org/uniprotkb/I3L568/entry#I3L568-1", "sequence": { "sequence": "METGRPRLNNMKPQPLQLVLEEQVLALQQQMAENQAASWRKLKSSQEAQQRQATLVRKLQAKVLQYRSWSQELEKRLEATGAPIPQRWENVEEPNLEQLLIRLEEEQQRCESLAEVNTQLRLHMEKADVVNKALREDVEKLTVDWSQARDELMRKESQWQMEQEFFKGYLKGEHGRLLSLWREVVTFRRHFLEMKSATDRDLMELKAEHVKLSGSLLTCCLRLTVGAPQARESTGSGRLNGSEPSQLMLLLSKTQELEKEAHKRSQELIQLKSQGDLEKAELQDRVTELSALLTQSQKQNEDYEKMVKALRETMKILEANHAELMEHEASLSRNAQEERLSLQQVIKDITQAMVEEGDHMAQGSGHEHSLDLDPSGFFSQFDSQQPDKALTLVRSVLTQRRQAVQDLKQQLSGCQEAVSSLQQQHHQWEEEGEALRQRLQKLTGERDTLAGQTVGLQGEVDSLSRERELLQKTREELQQQLEVLEQEAWRLRRTNMELQLQGDSAQGEKEEQQEELHLAVRERERLQEMLASLEAKQSESLSELITLREALESSRLEGELLRQEQTEVTAVLAKAEQSIVELSSSENSLKAEVADLRAAAVKLSALNEALALDKVGLNQQLLQLEQQNQSVCSRMEAAEQARSALQVGLAEVERSREALWEKNTYLEAQLQKAEAARAELQADLRGVQEEKEEIQEKLSEAHHQQEAVSVQMEQLRQEAKRQEEVLAREVQEKEALVREKAALEVRLQAVERDRQDLSEQLLGLSSAKELLENSLFEAQQQNSLIEVTKGQLEVQIQTITQAKEVIQGEVRCLQLELDTERSRAEQERDAATKQLAQAEQEGQTALQQQKSAHEEEVKGLQEKWEKERAWHQQELDKALKSLEREKTELEMRLREQQAETEAMRTQREEERAEAESTLRQMQLETEKERMSLLETLLQTQKELADASQQLERLRQDMKVQKLKEQETTGMLQTQLREAQKELEQAAQQHRDSLAALQEEGRALLQDKIDLHKQVEDLKSQLVSKEDSQRLVDQEVQEKLREAQECSRIQKELEKEKASLTLLLVEKEQRLLGLQEADSIRQQELSSLRQDMQEAQAGQKELSAQVELLKQEVKAKETDFLAQEARLLEELEASQVTEQQLRASLWAQEAKAAQLQLRLRSTESQLEVLLAEQQPGHQAQAQLASLCAVLQQALGSVCESRPELSGGGDSAPSLWGPEPDQNGARTLFKRGPLLTALSAEAVASALHKLNQDLWKTQQARDDLRDQAQKLGQRLTETEAEKSQLHTELQALQRQLSQNQEERSKWEGKQTSLESELVELHETVTSLQSRLRQAELQGIEAQNEQELLQAAKENLTAQVEHLQAAVAEARAQASAAEVLEEDLKTARSALKLKSKEVESERERAQALQEQGELKVAQGKALQENLARLTQTLSEREGEVETLQGKIQELEKQREMQKAALEVLSLDLKKRNQEVDLQQEQIQELEECRSVLEHLPMAVQEREQKLTLQREQIKELEKDRETQRNILEHQLLELEKKAQVIESQKGQIQDLKKQLVTLECLALELEENHHKIECQQKTIEELEGQREMQRAALTHLTLDLEERSQELQVQGSQIRELESHNSLLARELQEKDQEMTSQQDQTEELQRQKEHLTQDLKRREQEIVLLKERIQVLEDQRTLQTKILEEDLEQIKMSLRERGRDLASQRQLMQERAEEGKGQSKAQRGSLEHMKLILRDKEKEVECQQEHIQELQEHKAQLEQQLQGLHRKMGETSLLLTQREQEIVALQRHLQEAREQGELKEQSLQGQLEEAQRALARRDQELKALQQQQAQGQEENVMEKAGLLQRELEQAHVTLKERQAELEDYKEHVRRLQEELAVEGQRVQALEEVLSDLRAESREQEKALLALQQQCAEQAQEHEAEARALQDSWLQAEAMLKERDQELEALRAEGLSSQHREEAACGQVEALQEALSKAQADLQEKEQHLLGQVELSRSLEASTATLQAALDSCQAQSRQLEEALRKREGEVQVRDLRYQEAMQQLQQALTQRDEELRQQRKQGQLLEKSLAQRGQEDATQEKQEAKHEREEEEIRSLRESLQELQLTLAQKEEEILELREAQQRKSLEDLSHKGCPGKEPATTFDSLGPRLQRELERLQAALKQTEAREIEWREKAQDLALSLAQSKASVSDLQEVALFLQASVLERDSEQQRLQDELELTKLTLEKERLHSPGPSSRAERGPRGEPGVQLGEVSGVKTEPSPEMEERQLWEQRLEHLQRAVALLEVDRSQLQQHNAQLRTTLEQVERERRKLKRGSMRALRAGDLESGEATAPSPMQQDGRGRQKGCSDAKHMVELQKEVALLRAQLALERKQKQDYIARSVQTSRELADLHHGLSHSLLAVAQAPEATVLEAETRKLDESLTQSLTSPGPALLCPSSSAAQTASR", "length": 2440, "header": "tr|I3L568-1|I3L568_PIG Isoform 1 of Centrosomal protein 250 OS=Sus scrofa OX=9823 GN=CEP250 PE=4 SV=3 CANONICAL=I3L568-1" }, "locus": { "chromosome": "17", "start_pos": 38866377, "end_pos": 38821671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025637.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025637.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019167.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019167.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1T947", "url": "https://www.uniprot.org/uniprotkb/A0A4X1T947" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100151840", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100151840", "resource": "KEGG Pathway" }, { "id": "R-SSC-2565942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "resource": "Reactome", "description": "Regulation of PLK1 Activity at G2/M Transition" }, { "id": "R-SSC-380259", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "resource": "Reactome", "description": "Loss of Nlp from mitotic centrosomes" }, { "id": "R-SSC-380270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "resource": "Reactome", "description": "Recruitment of mitotic centrosome proteins and complexes" }, { "id": "R-SSC-380284", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "resource": "Reactome", "description": "Loss of proteins required for interphase microtubule organization from the centrosome" }, { "id": "R-SSC-380320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "resource": "Reactome", "description": "Recruitment of NuMA to mitotic centrosomes" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" }, { "id": "R-SSC-8854518", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "resource": "Reactome", "description": "AURKA Activation by TPX2" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "regulation of centriole-centriole cohesion", "id": "GO:0030997", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030997", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "positive regulation of protein localization to centrosome", "id": "GO:1904781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904781", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "non-motile cilium assembly", "id": "GO:1905515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905515", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "detection of light stimulus involved in visual perception", "id": "GO:0050908", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050908", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "protein localization to centrosome", "id": "GO:0071539", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071539", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "centriole-centriole cohesion", "id": "GO:0010457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010457", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "photoreceptor inner segment", "id": "GO:0001917", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001917", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "photoreceptor outer segment", "id": "GO:0001750", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001750", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" }, { "name": "spindle pole centrosome", "id": "GO:0031616", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031616", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "I3L568", "url": "https://www.uniprot.org/uniprotkb/I3L568" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1352, "end_pos": 1354, "annotation": "n_glycosylation_sequon" }, { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 628, "end_pos": 630, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L568" }, { "id": "PF25774", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25774" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CEP250 coiled coil", "eco_id": "ECO_0000259", "start_pos": 2132, "end_pos": 2226, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L568", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L568" }, { "id": "PF15035", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15035" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rootletin-like coiled-coil", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 212, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1352, "end_pos": 1354 }, { "start_pos": 240, "end_pos": 242 }, { "start_pos": 628, "end_pos": 630 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUE4-1", "uniprot_ac": "F1SUE4", "uniprot_id": "F1SUE4_PIG", "mass": { "chemical_mass": 42446.0, "monoisotopic_mass": 42446.0 }, "refseq": { "ac": "XP_005662305", "name": "asporin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662305" }, "gene_names": [ { "name": "ASPN", "type": "recommended", "evidence": [ { "id": "F1SUE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUE4" } ] }, { "name": "ASPN", "type": "synonym", "evidence": [ { "id": "XP_005662305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662305" } ] } ], "protein_names": [ { "name": "Asporin", "type": "recommended", "evidence": [ { "id": "F1SUE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUE4/entry#names_and_taxonomy" } ] }, { "name": "asporin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005662305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662305" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUE4", "url": "https://www.uniprot.org/uniprotkb/F1SUE4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASPN", "url": "https://www.uniprot.org/uniprotkb/F1SUE4", "locus": { "chromosome": "3", "start_pos": 42165561, "end_pos": 42192813, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008072", "url": "https://www.ensembl.org/id/ENSSSCG00000008072" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008072", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008072", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511749", "url": "https://www.ncbi.nlm.nih.gov/gene/100511749", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "INDFCPT", "url": "https://omabrowser.org/oma/group/INDFCPT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SUE4", "url": "https://www.orthodb.org/?gene=F1SUE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01462", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01462", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13306", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13306", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005662305", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662305", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TZE8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TZE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUE4", "url": "https://www.uniprot.org/uniprotkb/F1SUE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUE4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKEYVLLLFLTLCSAKPLFRPSYMTLKNMMLKDMEEEGDDDDDNSLFPTREPINPFFPFDLFPTCPFGCQCYSRVVHCSDLGLSSVPSNIPFDTRMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKETFKGMNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAKLTSIPKELPSTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNRITDIENGSLANIPRVREIHLENNKLKKIPSGLQELKYLQIIFLHSNSITKVGVNDFCPTVPKMKKSLYSAISLFNNPVKYWEVQPATFRCVLGRMSVQLGNFRK", "length": 370, "header": "tr|F1SUE4-1|F1SUE4_PIG Isoform 1 of Asporin OS=Sus scrofa OX=9823 GN=ASPN PE=1 SV=1 CANONICAL=F1SUE4-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TZE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUE4/entry#A0A4X1TZE8-1", "sequence": { "sequence": "MKEYVLLLFLTLCSAKPLFRPSYMTLKNMMLKDMEEEGDDDDDNSLFPTREPINPFFPFDLFPTCPFGCQCYSRVVHCSDLGLSSVPSNIPFDTRMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKETFKGMNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAKLTSIPKDNLPSF", "length": 233, "header": "tr|A0A4X1TZE8-1|F1SUE4_PIG Computationally mapped isoform of Asporin OS=Sus scrofa OX=9823 GN=ASPN PE=1 SV=1 CANONICAL=F1SUE4-1" }, "locus": { "chromosome": "3", "start_pos": 42183844, "end_pos": 42166999, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000085782.1", "url": "https://www.ensembl.org/id/ENSSSCT00000085782.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071993.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071993.1" } ] } }, { "isoform_ac": "F1SUE4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUE4/entry#F1SUE4-1", "sequence": { "sequence": "MKEYVLLLFLTLCSAKPLFRPSYMTLKNMMLKDMEEEGDDDDDNSLFPTREPINPFFPFDLFPTCPFGCQCYSRVVHCSDLGLSSVPSNIPFDTRMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKETFKGMNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAKLTSIPKELPSTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNRITDIENGSLANIPRVREIHLENNKLKKIPSGLQELKYLQIIFLHSNSITKVGVNDFCPTVPKMKKSLYSAISLFNNPVKYWEVQPATFRCVLGRMSVQLGNFRK", "length": 370, "header": "tr|F1SUE4-1|F1SUE4_PIG Isoform 1 of Asporin OS=Sus scrofa OX=9823 GN=ASPN PE=1 SV=1 CANONICAL=F1SUE4-1" }, "locus": { "chromosome": "3", "start_pos": 42183844, "end_pos": 42166821, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008845.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008845.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008621.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008621.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1TZE8", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZE8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7GTA5-1", "protein_name": "Asporin isoform X1", "gene_name": "Aspn", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPGWTCTQDSMKEYMMLLLLAVCSAKPFSSPSHTALKNMMLKDMEDMDDDDNDDDNNSLFPTKEPVNPFFPFDLFPTCPFGCQCYSRVVHCSDLGLTSVPSNIPFDTRMVDLQNNKIKEIKENDFRGLTSLYALILNNNKLTKIHPKTFLTTKKLKRLYLSHNQLSEIPLNLPKSLAELRIHDNKVKKIQKDAFKGMNALHVLEMSANPLENNGIEPGAFEGVTVFHIRIAEAKLTSIPKGLPPTLLELHLDFNKISTVELEDFKRYKELQRLGLGNNRITDIENGSFANIPRVREIHLEHNKLKKIPSGLQELKYLQIIFLHYNSITKVGVNDFCPTVPKMKKSLYSAISLFNNPMKYWEIQPATFRCVLGRMSVQLGNVGK", "length": 383 }, "evidence": [ { "id": "F1SUE4", "url": "https://omabrowser.org/oma/group/F1SUE4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BT96-1", "protein_name": "Asporin", "gene_name": "BGN", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEYTLLLFLALCSAKPLIGPSYFTLKNMMLQDMEEEDEDDDDDNSLFPTTEPIISLIPFDLFPTCPFGCQCYVRVVHCSDLGLTSIPRNIPPDTRMIDLQNNKIREVKENDLQGLASLYALALNNNKITKIHPKAFQPTKNLRRLYLSHNQLTEIPTNLPKTLAELRIHANKVKKIPKDAFKGMKSLHVLEMSANPLNNDGIEPGAFEGVNIYHIRIAEAKLTSIPKDLPSSLLELHLDDNKITAVELEDFNRYKDLQRLGLGNNKIKDVENGSFANIPSIREIHLEKNKLKKVPPGLPDLRYLQVVFLHSNHIAKLGVNDFCPTGRRKKKALYSGISLFNNPVKYWEVQPSTFRCILARNSVQLGNFLK", "length": 371 }, "evidence": [ { "id": "F1SUE4", "url": "https://omabrowser.org/oma/group/F1SUE4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q1LXA7-1", "protein_name": "Asporin", "gene_name": "aspn", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKVLLLLALLTLCNAKPYKHINVMEFMKHHDIMQQDAGDFDDDDDDDDDDDKDYDDYDDNFVTDCPEGCRCSKKVLQCSDQGLTKVPKDIPANTLLLDLQNNDITEIKEDDFKGLDNLYALFLLNNQISKIHPKAFRNMNKLKILHLSYNLLTQMPENLPISVQSLRLHDNKISRLPKGAFKGMHDLNVLELSANPITNSGIDVGAFDDMATLYLRIAEAKLTAIPKDLPSSLNELHLDYNKIAKVESEDFLRLKGLQRLWLDFNQIKYVENGTFAATPKVREIHLDNNKLKKIPPGLNTLKYLQVMYLHANSIGYVGVNDFCPSRTRAKKALYTRISLYANPVKYWEIQPPTFRCVSSHNSVQLGNHRK", "length": 370 }, "evidence": [ { "id": "F1SUE4", "url": "https://omabrowser.org/oma/group/F1SUE4/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3ZBN5-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKVYVLLVFLTLCSAKPLFHPSYLTLKNLMLKDMEDEGDSDADNSLFPTREPINPFFPFDLFSTCPFGCQCYSRVVHCSDLGLSSVPSNIPFDTRMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHDNKVKKIQKATFKGMNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAKLTSIPKELPSTLLELHLDYNKISVVELEDFKRYKDLQRLGLGNNRITDIENGSLANIPRVREIHLENNKLKKVPSGLQELKYLQIIFLHSNSITKVGVNDFCPTVPKMKKSLYSAISLSNNPVKYWEVQPATFRCVLSRMSVQLGNFRK", "length": 370 }, "evidence": [ { "id": "F1SUE4", "url": "https://omabrowser.org/oma/group/F1SUE4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99MQ4-1", "protein_name": "Asporin", "gene_name": "Aspn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKEYVMLLLLAVCSAKPFFSPSHTALKNMMLKDMEDTDDDDNDDDDNSLFPTKEPVNPFFPFDLFPTCPFGCQCYSRVVHCSDLGLTSVPNNIPFDTRMVDLQNNKIKEIKENDFKGLTSLYALILNNNKLTKIHPKTFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHDNKVKKIQKDTFKGMNALHVLEMSANPLENNGIEPGAFEGVTVFHIRIAEAKLTSIPKGLPPTLLELHLDFNKISTVELEDLKRYRELQRLGLGNNRITDIENGTFANIPRVREIHLEHNKLKKIPSGLQELKYLQIIFLHYNSIAKVGVNDFCPTVPKMKKSLYSAISLFNNPMKYWEIQPATFRCVLGRMSVQLGNVGK", "length": 373 }, "evidence": [ { "id": "F1SUE4", "url": "https://omabrowser.org/oma/group/F1SUE4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BXN1-1", "protein_name": "Asporin", "gene_name": "ASPN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKEYVLLLFLALCSAKPFFSPSHIALKNMMLKDMEDTDDDDDDDDDDDDDDEDNSLFPTREPRSHFFPFDLFPMCPFGCQCYSRVVHCSDLGLTSVPTNIPFDTRMLDLQNNKIKEIKENDFKGLTSLYGLILNNNKLTKIHPKAFLTTKKLRRLYLSHNQLSEIPLNLPKSLAELRIHENKVKKIQKDTFKGMNALHVLEMSANPLDNNGIEPGAFEGVTVFHIRIAEAKLTSVPKGLPPTLLELHLDYNKISTVELEDFKRYKELQRLGLGNNKITDIENGSLANIPRVREIHLENNKLKKIPSGLPELKYLQIIFLHSNSIARVGVNDFCPTVPKMKKSLYSAISLFNNPVKYWEMQPATFRCVLSRMSVQLGNFGM", "length": 380 }, "evidence": [ { "id": "F1SUE4", "url": "https://omabrowser.org/oma/group/F1SUE4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SUE4", "url": "https://www.uniprot.org/uniprotkb/F1SUE4" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SUE4", "url": "https://www.uniprot.org/uniprotkb/F1SUE4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SUE4", "url": "https://www.uniprot.org/uniprotkb/F1SUE4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of transforming growth factor beta receptor signaling pathway", "id": "GO:0030512", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030512", "evidence": [ { "database": "UniProtKB", "id": "F1SUE4", "url": "https://www.uniprot.org/uniprotkb/F1SUE4" } ], "pmid": "" }, { "name": "bone mineralization", "id": "GO:0030282", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030282", "evidence": [ { "database": "UniProtKB", "id": "F1SUE4", "url": "https://www.uniprot.org/uniprotkb/F1SUE4" } ], "pmid": "" }, { "name": "negative regulation of tooth mineralization", "id": "GO:0070171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070171", "evidence": [ { "database": "UniProtKB", "id": "F1SUE4", "url": "https://www.uniprot.org/uniprotkb/F1SUE4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUE4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUE4" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 64, "end_pos": 96, "start_aa": "Thr", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 272, "end_pos": 274 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5J5-1", "uniprot_ac": "F2Z5J5", "uniprot_id": "F2Z5J5_PIG", "mass": { "chemical_mass": 12259.0, "monoisotopic_mass": 12259.0 }, "refseq": { "ac": "NP_001172092", "name": "enhancer of rudimentary homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172092" }, "gene_names": [ { "name": "ERH", "type": "recommended", "evidence": [ { "id": "F2Z5J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5" } ] }, { "name": "ERH", "type": "synonym", "evidence": [ { "id": "NP_001172092", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172092" } ] } ], "protein_names": [ { "name": "Enhancer of rudimentary homolog", "type": "recommended", "evidence": [ { "id": "F2Z5J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5/entry#names_and_taxonomy" } ] }, { "name": "enhancer of rudimentary homolog", "type": "synonym", "evidence": [ { "id": "NP_001172092", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172092" } ] } ], "function": [ { "annotation": "May have a role in the cell cycle.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FDJ4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDJ4#function" }, { "database": "UniProtKB", "id": "ARBA00003742", "url": "https://www.uniprot.org/uniprotkb/ARBA00003742#function" }, { "database": "UniProtKB", "id": "PIRNR016393", "url": "https://www.uniprot.org/uniprotkb/PIRNR016393#function" }, { "database": "UniProtKB", "id": "F2Z5J5", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5#function" }, { "database": "UniProtKB", "id": "A0A4X1TZH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZH6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5J5", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ERH", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5", "locus": { "chromosome": "7", "start_pos": 93068253, "end_pos": 93083980, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002307", "url": "https://www.ensembl.org/id/ENSSSCG00000002307" } ] } } ], "crossref": [ { "id": "F2Z5J5", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5J5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000002307", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002307", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152505", "url": "https://www.ncbi.nlm.nih.gov/gene/100152505", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000781", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000781", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152505", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152505", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ESRTWSD", "url": "https://omabrowser.org/oma/group/ESRTWSD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5J5", "url": "https://www.orthodb.org/?gene=F2Z5J5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12373", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12373", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12373:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12373:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01133", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01133", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001172092", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001172092", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1TZH6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1TZH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1TZH6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDJ4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FDJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5J5", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5J5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 104, "header": "tr|F2Z5J5-1|F2Z5J5_PIG Isoform 1 of Enhancer of rudimentary homolog OS=Sus scrofa OX=9823 GN=ERH PE=1 SV=1 CANONICAL=F2Z5J5-1" }, "isoforms": [ { "isoform_ac": "A0A4X1TZH6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5/entry#A0A4X1TZH6-1", "sequence": { "sequence": "MLQILSHTKNFSKGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 102, "header": "tr|A0A4X1TZH6-1|F2Z5J5_PIG Computationally mapped isoform of Enhancer of rudimentary homolog OS=Sus scrofa OX=9823 GN=ERH PE=1 SV=1 CANONICAL=F2Z5J5-1" }, "locus": { "chromosome": "7", "start_pos": 93081826, "end_pos": 93068659, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091532.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091532.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061088.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061088.1" } ] } }, { "isoform_ac": "A0A8W4FDJ4-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5/entry#A0A8W4FDJ4-1", "sequence": { "sequence": "SHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 103, "header": "tr|A0A8W4FDJ4-1|F2Z5J5_PIG Computationally mapped isoform of Enhancer of rudimentary homolog OS=Sus scrofa OX=9823 GN=ERH PE=1 SV=1 CANONICAL=F2Z5J5-1" }, "locus": { "chromosome": "7", "start_pos": 93081745, "end_pos": 93068659, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095317.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095317.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076929.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076929.1" } ] } }, { "isoform_ac": "F2Z5J5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5/entry#F2Z5J5-1", "sequence": { "sequence": "MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 104, "header": "tr|F2Z5J5-1|F2Z5J5_PIG Isoform 1 of Enhancer of rudimentary homolog OS=Sus scrofa OX=9823 GN=ERH PE=1 SV=1 CANONICAL=F2Z5J5-1" }, "locus": { "chromosome": "7", "start_pos": 93083882, "end_pos": 93068659, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002569.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002569.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002505.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002505.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FDJ4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FDJ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152505", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152505", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7H9A7-1", "protein_name": "Enhancer of rudimentary homolog", "gene_name": "LOC100768642", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 104 }, "evidence": [ { "id": "F2Z5J5", "url": "https://omabrowser.org/oma/group/F2Z5J5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8I6GLN9-1", "protein_name": "Enhancer of rudimentary homolog", "gene_name": "Erh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "CCAQVREDIRIFIEVVFPLQSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 123 }, "evidence": [ { "id": "F2Z5J5", "url": "https://omabrowser.org/oma/group/F2Z5J5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1NHW3-1", "protein_name": "Enhancer of rudimentary homolog", "gene_name": "ERH", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQASK", "length": 104 }, "evidence": [ { "id": "F2Z5J5", "url": "https://omabrowser.org/oma/group/F2Z5J5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P84089-1", "protein_name": "Enhancer of rudimentary homolog", "gene_name": "Erh", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 104 }, "evidence": [ { "id": "F2Z5J5", "url": "https://omabrowser.org/oma/group/F2Z5J5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P84090-1", "protein_name": "Enhancer of rudimentary homolog", "gene_name": "ERH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 104 }, "evidence": [ { "id": "F2Z5J5", "url": "https://omabrowser.org/oma/group/F2Z5J5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q24337-1", "protein_name": "Protein enhancer of rudimentary", "gene_name": "e(r)", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSHTILLVQPGARPETRTYCDYESVNECMEGVCKIYEEHLKRRNPNTPTITYDISQLFDFIDTMVDISCMVYQKSTNTYAPYNKDWIKEKIYVLLRQAAFSSNT", "length": 104 }, "evidence": [ { "id": "F2Z5J5", "url": "https://omabrowser.org/oma/group/F2Z5J5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q3SZC0-1", "protein_name": "Enhancer of rudimentary homolog", "gene_name": "ERH", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFIDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 104 }, "evidence": [ { "id": "F2Z5J5", "url": "https://omabrowser.org/oma/group/F2Z5J5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q86A92-1", "protein_name": "Enhancer of rudimentary homolog", "gene_name": "erh", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHTIVLLQTTMGKSSRTFMDYESVNQAIEGICNMYEQRLKQERPNQKNITYDISQLFKFIDSLADLSCLVYTSHINAYTPYNKEWIKTKIINHLQKLAQ", "length": 100 }, "evidence": [ { "id": "F2Z5J5", "url": "https://omabrowser.org/oma/group/F2Z5J5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q98874-1", "protein_name": "Enhancer of rudimentary homolog", "gene_name": "erh", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSHTILLVQPTKRPEGRTYADYESVNECMEGVCKMYEEHLKRMNPNSPSITYDISQLFDFVDDLADLSCLVYRADTQTYQPYNKDWIKEKIYVLLRRQAQQAGK", "length": 104 }, "evidence": [ { "id": "F2Z5J5", "url": "https://omabrowser.org/oma/group/F2Z5J5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J5", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J5", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5" } ], "pmid": "" }, { "name": "methylosome", "id": "GO:0034709", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034709", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J5", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "methyl-CpG binding", "id": "GO:0008327", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008327", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J5", "url": "https://www.uniprot.org/uniprotkb/F2Z5J5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5J5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 104, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5J5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5J5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STW1-1", "uniprot_ac": "F1STW1", "uniprot_id": "F1STW1_PIG", "mass": { "chemical_mass": 110339.0, "monoisotopic_mass": 110339.0 }, "refseq": { "ac": "XP_003129764", "name": "DNA damage-induced apoptosis suppressor protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129764" }, "gene_names": [ { "name": "DDIAS", "type": "recommended", "evidence": [ { "id": "F1STW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STW1" } ] }, { "name": "DDIAS", "type": "synonym", "evidence": [ { "id": "XP_003129764", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129764" } ] } ], "protein_names": [ { "name": "DNA damage-induced apoptosis suppressor protein", "type": "recommended", "evidence": [ { "id": "F1STW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STW1/entry#names_and_taxonomy" } ] }, { "name": "DNA damage-induced apoptosis suppressor protein", "type": "synonym", "evidence": [ { "id": "XP_003129764", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129764" } ] }, { "name": "Nitric oxide-inducible gene protein", "type": "synonym", "evidence": [ { "id": "F1STW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STW1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May be an anti-apoptotic protein involved in DNA repair or cell survival.", "evidence": [ { "database": "UniProtKB", "id": "F1STW1", "url": "https://www.uniprot.org/uniprotkb/F1STW1#function" }, { "database": "UniProtKB", "id": "ARBA00053253", "url": "https://www.uniprot.org/uniprotkb/ARBA00053253#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STW1", "url": "https://www.uniprot.org/uniprotkb/F1STW1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DDIAS", "url": "https://www.uniprot.org/uniprotkb/F1STW1", "locus": { "chromosome": "9", "start_pos": 17097588, "end_pos": 17077884, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014898", "url": "https://www.ensembl.org/id/ENSSSCG00000014898" } ] } } ], "crossref": [ { "id": "F1STW1", "url": "https://alphafold.ebi.ac.uk/entry/F1STW1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014898", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014898", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517842", "url": "https://www.ncbi.nlm.nih.gov/gene/100517842", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013955", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013955", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043522", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043522", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517842", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517842", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WQPSLEL", "url": "https://omabrowser.org/oma/group/WQPSLEL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STW1", "url": "https://www.orthodb.org/?gene=F1STW1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35537", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35537", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35537:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35537:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08646", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129764", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129764", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1U932", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U932", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1U932-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U932-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STW1", "url": "https://www.uniprot.org/uniprotkb/F1STW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STW1-1", "url": "https://www.uniprot.org/uniprotkb/F1STW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRRRKFLLASVLALQNTSFIYPSCQKCFSRIILVSKRSNCPKCGFTGKAENANYRYKLTLKVAESNRLFGITVFGSCLDAFFGLTATGLHRYIQDPNEIPETLDSDTTQKLLTKAVETCFVGQSFIFGVTNFENQHRQGSDSSNFLQQFSNYRREVKALVACQIVLPDPSVVGFTVLDYFHQLLQLSDTRKLGCGSQAPNSHFLALEHSDSDLSSIYGPDSSSCCFESHGRDNFSGFWQLSLELTSIVSQLTDDNDFSTLEHSKATGTLEENRKCISSAEAPGSDSCHDTIQGSWSLVSYMDKKNATQKLQANQPSTIHSNPHELGVPGSHFFPLKVQETPESSNTKSFHSAVEIKNTYSQWEPTCHQHDDVDTPTSLQERSLCCPPSSLRLEEIDGGSQNCDPEIWDDLPFSESLNKFLAAVESEIALTQTDANSRKWHLDNDISKFNADHSRLSVTPQKATRALHTPSPALRSPQARVKANSSKDNFPSNCEANPGPGIPKASQPENMAENGYVSGSKKDTSENFLPNVYLSALFPSSKGSGTTVTLKSTRIPPHNAEFSLKRSTSERDHSCLNSKYLNGCAEKSFSEMSEKLMALHYRKYNVSKLYNLDNKHYCKWPKNQGDSSTICRKLTYPLEAPCSSPNRSTNTLKEMTYEHTSNNLTENCSTGHEGGYDASADLFDDSAKEMDIATEMTKKSQDILLEWAESHHTESDFPLRSPSENYSQLSQKLSSQITPASLYPRTCSSPPHFPSDSECDFEDSQDFVPCSQSTPVTGFHQTRIHGMKGMFEKLPAFYSDLDTNYKKTRISSENEAKQAIPSCPKNITTPSQKSRSPAISGGTQPEVFNDCPIAKGLGTDVDEWVPPTTQKVFPSEKLGFRAMGLRKCPAAYNSPNQKELPRKKLKYIKQRTDKYLAKKEFNLKNTFTATVTKQKTNCNTTRSGWIFKESVLGLGSCSEVKCCLPFSENWPPSVPETTSAWSPELFSQNVP", "length": 991, "header": "tr|F1STW1-1|F1STW1_PIG Isoform 1 of DNA damage-induced apoptosis suppressor protein OS=Sus scrofa OX=9823 GN=DDIAS PE=4 SV=2 CANONICAL=F1STW1-1" }, "isoforms": [ { "isoform_ac": "A0A4X1U932-1", "url": "https://www.uniprot.org/uniprotkb/F1STW1/entry#A0A4X1U932-1", "sequence": { "sequence": "MNRRRKFLLASVLALQNTSFIYPSCQKCFSRIILVSKRSNCPKCGFTGKAENANYRYKLTLKVAESNRLFGITVFGSCLDAFFGLTATGLHRTLKTNTDKVQIPATSYSSSPTTEEKLKH", "length": 120, "header": "tr|A0A4X1U932-1|F1STW1_PIG Computationally mapped isoform of DNA damage-induced apoptosis suppressor protein OS=Sus scrofa OX=9823 GN=DDIAS PE=4 SV=1 CANONICAL=F1STW1-1" }, "locus": { "chromosome": "9", "start_pos": 17094792, "end_pos": 17085962, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000080798.2", "url": "https://www.ensembl.org/id/ENSSSCT00000080798.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063997.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063997.1" } ] } }, { "isoform_ac": "F1STW1-1", "url": "https://www.uniprot.org/uniprotkb/F1STW1/entry#F1STW1-1", "sequence": { "sequence": "MNRRRKFLLASVLALQNTSFIYPSCQKCFSRIILVSKRSNCPKCGFTGKAENANYRYKLTLKVAESNRLFGITVFGSCLDAFFGLTATGLHRYIQDPNEIPETLDSDTTQKLLTKAVETCFVGQSFIFGVTNFENQHRQGSDSSNFLQQFSNYRREVKALVACQIVLPDPSVVGFTVLDYFHQLLQLSDTRKLGCGSQAPNSHFLALEHSDSDLSSIYGPDSSSCCFESHGRDNFSGFWQLSLELTSIVSQLTDDNDFSTLEHSKATGTLEENRKCISSAEAPGSDSCHDTIQGSWSLVSYMDKKNATQKLQANQPSTIHSNPHELGVPGSHFFPLKVQETPESSNTKSFHSAVEIKNTYSQWEPTCHQHDDVDTPTSLQERSLCCPPSSLRLEEIDGGSQNCDPEIWDDLPFSESLNKFLAAVESEIALTQTDANSRKWHLDNDISKFNADHSRLSVTPQKATRALHTPSPALRSPQARVKANSSKDNFPSNCEANPGPGIPKASQPENMAENGYVSGSKKDTSENFLPNVYLSALFPSSKGSGTTVTLKSTRIPPHNAEFSLKRSTSERDHSCLNSKYLNGCAEKSFSEMSEKLMALHYRKYNVSKLYNLDNKHYCKWPKNQGDSSTICRKLTYPLEAPCSSPNRSTNTLKEMTYEHTSNNLTENCSTGHEGGYDASADLFDDSAKEMDIATEMTKKSQDILLEWAESHHTESDFPLRSPSENYSQLSQKLSSQITPASLYPRTCSSPPHFPSDSECDFEDSQDFVPCSQSTPVTGFHQTRIHGMKGMFEKLPAFYSDLDTNYKKTRISSENEAKQAIPSCPKNITTPSQKSRSPAISGGTQPEVFNDCPIAKGLGTDVDEWVPPTTQKVFPSEKLGFRAMGLRKCPAAYNSPNQKELPRKKLKYIKQRTDKYLAKKEFNLKNTFTATVTKQKTNCNTTRSGWIFKESVLGLGSCSEVKCCLPFSENWPPSVPETTSAWSPELFSQNVP", "length": 991, "header": "tr|F1STW1-1|F1STW1_PIG Isoform 1 of DNA damage-induced apoptosis suppressor protein OS=Sus scrofa OX=9823 GN=DDIAS PE=4 SV=2 CANONICAL=F1STW1-1" }, "locus": { "chromosome": "9", "start_pos": 17097287, "end_pos": 17085962, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016253.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016253.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015819.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015819.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1U932", "url": "https://www.uniprot.org/uniprotkb/A0A4X1U932" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517842", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517842", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XYR8-1", "protein_name": "DNA damage induced apoptosis suppressor", "gene_name": "DDIAS", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSSARRLLSASVISIQNSCFIYPACQSCLSRLILDSRRFNCLKCGCTGEAEEASYRYRLSLKIADTNDLFDITVFGSCLDPFFGVTAGNLQRCIQDFNQLSGETNKAASPGVLVHAVETCFIGKRFIFGVKGYGSEDQACSAASSILQNCSRINRGTKNLIACQIFLPNAAITGFTVISYFRRLLQSVTFGNNNNSSYLPDVSSAPVDESVSELSSLSVLSRNSCFVQSSGRESFLGSWQQSFSLTSSVAWVTAEDFSSLEVGKLVSEQHEEEGRSVSAESCSVSLNNQTLSDLQFCSSSVKEGNKEEDNELSSQPSQAGRISATDKSERISSSKTECSLQNSSQLLENPLDFGSKIIYPETNGGNYSCQEKSPKLLFYGGHTSASNHVNLTGVSQTDSMLWDELPFSESLNEFLARIEYKSFVASPNLDAGKCGLLESRKLSINHNKSHPRQTPVAGALLEVSGRFLPSAEKDSWESISFACLKASPNPLSDQVLQHNSSSSVLSSADKEFGASCFTPHPHLLTPSQSLQVTSKTSAPKRSRQSKKANAEVSKSACSFISPHFSAEHEETCLQRSKRATCVHSVHDSCLTGSENKENFSCTPNQRKDLTFTGSWDSRPVTPSDIRKIHERELKPLTELRENAFKGINKREVIWNSSCPEGSYNASADLFDVIAGEGAKTAESLNKSCNSLIQEDPPTEKVTTPKLVLFPGDVSCNGSKQTSSLHRTPLAFRKHSTPLTCSFYDSDCNTFMARDFVPYSESTPVAKPLQKPWPAGEHSPSVTVFTPENPTKIHSKRKRSRSSFQNTLLQQLTGRLVKRERLSSGEDIEGRSSVPQQFRNSQSPANFEEWIPPSANKRFKPTASLSIKPVSWDSQLTCEHADRNPISGSKENGEKDVCFRSEGFNSVNTATVPTTPVSAGIAKALFLNDTVLESCYSEGKSLCSRANYSGVSMEGATGWSPELFFQVQSPIFRKPKHKK", "length": 978 }, "evidence": [ { "id": "F1STW1", "url": "https://omabrowser.org/oma/group/F1STW1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6NZG4-1", "protein_name": "DNA damage-induced apoptosis suppressor protein", "gene_name": "Ddias", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNKRRKFLFASVLAVQNSNFIYPSCQRCFSKIILESKRFTCPKCGSSGDTGSTNYRYKLSLKVAESSKLFFITVFGSCLDTFFGLTATGLHRYLGDSIKNLETLDSGRTQSLLTTAVEKCFVGQSFVFGVTNFGDVCGHDSDSSNFQQPCCKHRGEVRTLVASQIILPSPHVKGFTVIAYLHPLLHKKPHCGSQEHSSQSLTSDDSDSDLNNIQGSGNTSWFSESSVGEDFFRYWEPSLELTSSDSQVTSSDDFPASKQIMASGTPNQNRHCISVSEVTSSKNCHDSLQSLWSLHSCMDKNNTTGKLGEELGLPSPVCNSCHESRLSDSHFFPSQMQEPFEEHNLECYSKAEKNDYSQYDIACYQHHEVNTTPILQQRSSAFSLSSLKPEETANPSQNSDSLIWDDLPLSESLNKFLAVVESEVAVTEIDAKNRKQGMDKSIDKCHKNYSRLSLTPWRNTRALNTSCFSLRSSQAMMKDSGKEALFSNCKSNSSPHIQKESKADKTEAAVSIAGSRSDISEDFLPDTCSSALFTSSKDREAFITQKRTSGVLQQRNEISCRPSTSISDCSDLRSRYFTGCGQKLHSGTKGKLAIQNCSKKYSDASDLHKLENKHRWPKKEDDNFTICRKLTYPLETLCSSPESINTSKEMPYRPSNNNLTPSSSGDHEGSYNASADLFDYIAKDKDIGTEITKIPQDNLLPLEVPCTENYPINENRGQPSQKPSLQSISPSRYSRPRSQSDSECDFEESQDFVPCSQSTPVAGFHQRIHGLNGASKILPSIYSNPNANYKNRKNSPLTGQYQATSACSKNVKAFRQKPESPFVSSLTQANVFNHCPAAESLGNDVDEWVPPTTKKVFISDILGFRVMGLRKCLDLHYSPDPKELPRKKLIKVTHKTNI", "length": 898 }, "evidence": [ { "id": "F1STW1", "url": "https://omabrowser.org/oma/group/F1STW1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IXT1-1", "protein_name": "DNA damage-induced apoptosis suppressor protein", "gene_name": "DDIAS", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNRRRKFLLASVLALQNSSFIYPSCQKCFSRIILVSKRSNCPKCGSTGESGNANYRYKLSLKVAESNKLFVITVFGSCLDTFFGLTATGLHRYIQDPNKIPETLDNDTTQNLLTKAVETCFVGQSFIFGVTNFENQPGQGSDASNFLQQCSDHKRKAKALVACQIVLPDPGIAGFTVIDYFHQLLQTFNFRKLQCDSQAPNNHLLALDHSNSDLSSIYTSDSTSDFFKSCSKDTFSKFWQPSLEFTCIVSQLTDNDDFSASEQSKAFGTLQQNRKSISIAEATGSSSCHDPIQDSWSLVSYMDKKSTAEKLGKELGLQAKELSAVHSSHHEIGVNDSNLFSLEMREPLESSNTKSFHSAVEIKNRSQHELPCFQHHGIDTPTSLQKRSACCPPSLLRLEETASSSQDGDPQIWDDLPFSESLNKFLAVLESEIAVTQADVSSRKHHVDNDIDKFHADHSRLSVTPQRTTGALHTPPIALRSSQVIVKANCSKDDFLFNCKGNLSPSVEKESQPDNKVEAVSVNHNGRDMSEYFLPNPYLSALSSSSKDLETIVTLKKTIRISPHRESDHSSLNNKYLNGCGEISVSEMNEKLTTLCYRKYNDVSDLCKLENKQYCRWSKNQDDSFTICRKLTYPLETLCNSPNRSTNTLKEMPWGHINNNVTQSYSIGYEGSYDASADLFDDIAKEMDIATEITKKSQDILLKWGTSLAESHPSESDFSLRSLSEDFIQPSQKLSLQSLSDSRHSRTCSPTPHFQSDSEYNFENSQDFVPCSQSTPISGFHQTRIHGINRAFKKPVFYSDLDGNYEKIRIFPENDKQQASPSCPKNIKTPSQKIRSPIVSGVSQPDVFNHYPFAECHETDSDEWVPPTTQKIFPSDMLGFQGIGLGKCLAAYHFPDQQELPRKKLKHIRQGTNKGLIKKKLKNMLAAVVTKKKTHKYNCKSSGWISKCPDIQVLAAPQLHPILGPDSCSEVKCCLPFSEKGPPSVCETRSAWSPELFS", "length": 998 }, "evidence": [ { "id": "F1STW1", "url": "https://omabrowser.org/oma/group/F1STW1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage", "id": "GO:1902230", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902230", "evidence": [ { "database": "UniProtKB", "id": "F1STW1", "url": "https://www.uniprot.org/uniprotkb/F1STW1" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1STW1", "url": "https://www.uniprot.org/uniprotkb/F1STW1" } ], "pmid": "" }, { "name": "regulation of DNA stability", "id": "GO:0097752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097752", "evidence": [ { "database": "UniProtKB", "id": "F1STW1", "url": "https://www.uniprot.org/uniprotkb/F1STW1" } ], "pmid": "" }, { "name": "regulation of cell cycle", "id": "GO:0051726", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051726", "evidence": [ { "database": "UniProtKB", "id": "F1STW1", "url": "https://www.uniprot.org/uniprotkb/F1STW1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1STW1", "url": "https://www.uniprot.org/uniprotkb/F1STW1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STW1", "url": "https://www.uniprot.org/uniprotkb/F1STW1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 17, "end_pos": 19, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 306, "end_pos": 308, "annotation": "n_glycosylation_sequon" }, { "start_pos": 484, "end_pos": 486, "annotation": "n_glycosylation_sequon" }, { "start_pos": 605, "end_pos": 607, "annotation": "n_glycosylation_sequon" }, { "start_pos": 646, "end_pos": 648, "annotation": "n_glycosylation_sequon" }, { "start_pos": 663, "end_pos": 665, "annotation": "n_glycosylation_sequon" }, { "start_pos": 667, "end_pos": 669, "annotation": "n_glycosylation_sequon" }, { "start_pos": 725, "end_pos": 727, "annotation": "n_glycosylation_sequon" }, { "start_pos": 826, "end_pos": 828, "annotation": "n_glycosylation_sequon" }, { "start_pos": 939, "end_pos": 941, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STW1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 991, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STW1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STW1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STW1" }, { "id": "PF08646", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08646" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Replication factor A C-terminal", "eco_id": "ECO_0000259", "start_pos": 10, "end_pos": 99, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 17, "end_pos": 19 }, { "start_pos": 234, "end_pos": 236 }, { "start_pos": 306, "end_pos": 308 }, { "start_pos": 484, "end_pos": 486 }, { "start_pos": 605, "end_pos": 607 }, { "start_pos": 646, "end_pos": 648 }, { "start_pos": 663, "end_pos": 665 }, { "start_pos": 667, "end_pos": 669 }, { "start_pos": 725, "end_pos": 727 }, { "start_pos": 826, "end_pos": 828 }, { "start_pos": 939, "end_pos": 941 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS16-1", "uniprot_ac": "F1SS16", "uniprot_id": "F1SS16_PIG", "mass": { "chemical_mass": 45407.0, "monoisotopic_mass": 45407.0 }, "refseq": { "ac": "XP_005659821", "name": "protein FAM98B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659821" }, "gene_names": [ { "name": "FAM98B", "type": "recommended", "evidence": [ { "id": "F1SS16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS16" } ] }, { "name": "FAM98B", "type": "synonym", "evidence": [ { "id": "XP_005659821", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659821" } ] } ], "protein_names": [ { "name": "Family with sequence similarity 98 member B", "type": "synonym", "evidence": [ { "id": "F1SS16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS16/entry#names_and_taxonomy" } ] }, { "name": "protein FAM98B", "type": "synonym", "evidence": [ { "id": "XP_005659821", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659821" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS16", "url": "https://www.uniprot.org/uniprotkb/F1SS16" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM98B", "url": "https://www.uniprot.org/uniprotkb/F1SS16", "locus": { "chromosome": "1", "start_pos": 132789275, "end_pos": 132819489, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004792", "url": "https://www.ensembl.org/id/ENSSSCG00000004792" } ] } } ], "crossref": [ { "id": "F1SS16", "url": "https://alphafold.ebi.ac.uk/entry/F1SS16", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004792", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004792", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522915", "url": "https://www.ncbi.nlm.nih.gov/gene/100522915", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522915", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522915", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QQWISGS", "url": "https://omabrowser.org/oma/group/QQWISGS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SS16", "url": "https://www.orthodb.org/?gene=F1SS16", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31353:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31353:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10239", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10239", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005659821", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005659821", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A4X1UND6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UND6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A4X1UND6-1", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UND6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS16", "url": "https://www.uniprot.org/uniprotkb/F1SS16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS16-1", "url": "https://www.uniprot.org/uniprotkb/F1SS16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGPEPGPEPTMEGDVLDTLEALGYKGPLLEEQALIKAAEGGLASPEFSELCVWLGSQIKSLCNLEESITSAGRDDLESFQLEISGFLKEMVCPYSVLISGDIKDRLKKKDDCLKLLLFLSTELQALQIIQNKKCKNSQLDKNSEIYQEVQAICDTLGVPKSTTSDIPLMLSQVESKVKDILSKVQKNHVGKPLLKIDLNLEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKVKTDDIARIYQPKRYALSPKTTITLAHLLAAREDLSKIIRTSSGSSREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGRGGWGGGGGGGGRGGGGGGRGGWGGGGGWGGGGGGGGGWSGGGGGGGRGGGFQGRGDYGGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGYRRY", "length": 428, "header": "tr|F1SS16-1|F1SS16_PIG Isoform 1 of Family with sequence similarity 98 member B OS=Sus scrofa OX=9823 GN=FAM98B PE=1 SV=2 CANONICAL=F1SS16-1" }, "isoforms": [ { "isoform_ac": "A0A4X1UND6-1", "url": "https://www.uniprot.org/uniprotkb/F1SS16/entry#A0A4X1UND6-1", "sequence": { "sequence": "MRGPEPGPEPTMEGDVLDTLEALGYKGPLLEEQALIKAAEGGLASPEFSELCVWLGSQIKSLCNLEESITSAGRDDLESFQLEISGFLKEMVCPYSVLISGDIKDRLKKKDDCLKLLLFLSTELQALQIIQNKKCKNSQLDKNSEIYQEVQAICDTLGVPKSTTSDIPLMLSQVESKVKDILSKVQKNHVGKPLLKIDLNLEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKVKTDDIARIYQPKRYALSPKTTITLAHLLAAREDLSKIIRTSSGSSREKTACAINKVGFSFSTVENEFIISCLMFLWILIHFS", "length": 326, "header": "tr|A0A4X1UND6-1|F1SS16_PIG Computationally mapped isoform of Family with sequence similarity 98 member B OS=Sus scrofa OX=9823 GN=FAM98B PE=1 SV=1 CANONICAL=F1SS16-1" }, "locus": { "chromosome": "1", "start_pos": 132819213, "end_pos": 132793311, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068466.2", "url": "https://www.ensembl.org/id/ENSSSCT00000068466.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069922.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069922.1" } ] } }, { "isoform_ac": "F1SS16-1", "url": "https://www.uniprot.org/uniprotkb/F1SS16/entry#F1SS16-1", "sequence": { "sequence": "MRGPEPGPEPTMEGDVLDTLEALGYKGPLLEEQALIKAAEGGLASPEFSELCVWLGSQIKSLCNLEESITSAGRDDLESFQLEISGFLKEMVCPYSVLISGDIKDRLKKKDDCLKLLLFLSTELQALQIIQNKKCKNSQLDKNSEIYQEVQAICDTLGVPKSTTSDIPLMLSQVESKVKDILSKVQKNHVGKPLLKIDLNLEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKVKTDDIARIYQPKRYALSPKTTITLAHLLAAREDLSKIIRTSSGSSREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGRGGWGGGGGGGGRGGGGGGRGGWGGGGGWGGGGGGGGGWSGGGGGGGRGGGFQGRGDYGGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGYRRY", "length": 428, "header": "tr|F1SS16-1|F1SS16_PIG Isoform 1 of Family with sequence similarity 98 member B OS=Sus scrofa OX=9823 GN=FAM98B PE=1 SV=2 CANONICAL=F1SS16-1" }, "locus": { "chromosome": "1", "start_pos": 132819213, "end_pos": 132789897, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005291.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005291.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005161.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005161.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A4X1UND6", "url": "https://www.uniprot.org/uniprotkb/A0A4X1UND6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522915", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522915", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9T5P2-1", "protein_name": "Family with sequence similarity 98 member B", "gene_name": "FAM98B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGPDPGPEPTMEGDVLDTLEALGYKGPLLEEQALTKAAESGLSSPEFSELCVWLSSQIKSLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKDDCLKLLLFLSTELQALQILQNKKCKNSQLDKNSEIYQEVQAICDTLGIPKSTTSDIPLMLNQVESKVKDILSKVQKNHVGKPLLKIDLNLEQAEKLERINDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKLKTDDIARIYQPKRYALSPKTTITLAHLLAAREDLSKIIRTSSGSSREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGSGRGGWGGGGGRGGGGSGRGGGGGGGGWGGGGGGGWGGAGGGGGRGGFQGRGDYGGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGYRRY", "length": 422 }, "evidence": [ { "id": "F1SS16", "url": "https://omabrowser.org/oma/group/F1SS16/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D4AE02-1", "protein_name": "Family with sequence similarity 98, member B", "gene_name": "Fam98b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRGPELGPETSMEGDVLDTLEALGYKGPLLEEQALSKAAEGGLSSPEFSELCIWLGSQIKSLCNLEESITSAGRDDLEGFQLEISGFLKEMACPYSVLVSGDIKERLTTKDDCLKLLLFLSTELQALQILQKKKHKNSQLDKNSEICQEVQAICDALGVPKSDTSDIPLLLSHVESKVKDILSKVQKSHVGKPLLKVDLTSEQAEKLERINDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKAKTDNIARIYQPKRYALSPKTTVTLAHLLAAREDLSKIIRTSSGISREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGRGGWGGGGGGRGGGGGGRGGWGGGGGGWGGGGGGGGGGGGGGWGGSGGGGGGRGGFQGRGDYGGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGYRRY", "length": 434 }, "evidence": [ { "id": "F1SS16", "url": "https://omabrowser.org/oma/group/F1SS16/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q52LJ0-2", "protein_name": "tRNA-splicing ligase complex subunit FAM98B", "gene_name": "FAM98B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRGPEPGPQPTMEGDVLDTLEALGYKGPLLEEQALTKAAEGGLSSPEFSELCIWLGSQIKSLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLISGDIKDRLKKKEDCLKLLLFLSTELQASQILQNKKHKNSQLDKNSEVYQEVQAMFDTLGIPKSTTSDIPHMLNQVESKVKDILSKVQKNHVGKPLLKMDLNSEQAEQLERINDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKVKTDDIARIYQPKRYALSPKTTITMAHLLAAREDLSKIIRTSSGTSREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGGGGGGGYRRY", "length": 433 }, "evidence": [ { "id": "F1SS16", "url": "https://omabrowser.org/oma/group/F1SS16/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80VD1-1", "protein_name": "tRNA-splicing ligase complex subunit FAM98B", "gene_name": "Fam98b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGPELGPETSMEGDVLDTLEALGYKGPLLEEQALSKAAEGGLSSPEFSELCIWLGSQIKSLCNLEESITSAGRDDLESFQLEISGFLKEMACPYSVLVSGDIKERLTKKDDCLKLLLFLSTELQALQILQKKKHKNSQLDKNSEICQEVQAVCDALGVPKSDTSDIPLLLSQVESKVKDILCRVQKNHVGKPLLKVDLSSEQAEKLERINDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKAKTDNIARIYQPKRYALSPKTTVTLAHLLAAREDLSKIIRTSSGISREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGRGGWGGGGGGRGGGGGGRGGWGGGGGWGGGGGSGGGWGGSGGGGGGRGGFQGRGDYGGRGDYGGRGGYGGRGGYGGRGYGDPYGGGGGGGGGYRRY", "length": 429 }, "evidence": [ { "id": "F1SS16", "url": "https://omabrowser.org/oma/group/F1SS16/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VBK9-1", "protein_name": "Protein FAM98B", "gene_name": "Dmel\\CG5913", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEDLELYLVDSLKALSFQGHCQKQENLSRALDAGIESPDMQEVVLWLAHELHILRKTDERVNQGKALNKDFSFELSLLLTELGCPYRELVQGPIEQRFKSRMALVQLLEYLTSELMTTKMVLKAQPVGPPCKRSKVDTNVQQVVENLAKDLQLGEVPKNINTKMLFEKITPRLEQAIKKTNPQVLSEPLLKLKKPLTDAQWQLLETLHRELEAEYNLRRQMMSTRLEATVQSFQWSESMRQRSNEIMDRFNRKMRELDQFKVGGKQTDLVALLAARSDLAIIEKTSSANVRKNTASKIQKHVIGRVPDRGGRANEHAPPPPEMPSWQQQRASGPPGGGRGGGGNFRGGRGGGGGGGFGGGRGGGGGGGGGNWQQPQQQQQQHQNQSYEQRDRSDRNDQQWISGSGRVQGTGWNPQGGRDGGGRDGGGRDGGGRDGGGRGRGGGGGRGGYRGGYR", "length": 454 }, "evidence": [ { "id": "F1SS16", "url": "https://omabrowser.org/oma/group/F1SS16/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SS16", "url": "https://www.uniprot.org/uniprotkb/F1SS16" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SS16", "url": "https://www.uniprot.org/uniprotkb/F1SS16" } ], "pmid": "" }, { "name": "tRNA-splicing ligase complex", "id": "GO:0072669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072669", "evidence": [ { "database": "UniProtKB", "id": "F1SS16", "url": "https://www.uniprot.org/uniprotkb/F1SS16" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "F1SS16", "url": "https://www.uniprot.org/uniprotkb/F1SS16" } ], "pmid": "" }, { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "F1SS16", "url": "https://www.uniprot.org/uniprotkb/F1SS16" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SS16", "url": "https://www.uniprot.org/uniprotkb/F1SS16" } ], "pmid": "" }, { "name": "protein methyltransferase activity", "id": "GO:0008276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008276", "evidence": [ { "database": "UniProtKB", "id": "F1SS16", "url": "https://www.uniprot.org/uniprotkb/F1SS16" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SS16-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 428, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SS16-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SS16" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L695-1", "uniprot_ac": "I3L695", "uniprot_id": "I3L695_PIG", "mass": { "chemical_mass": 41091.0, "monoisotopic_mass": 41091.0 }, "refseq": {}, "gene_names": [ { "name": "LEFTY2", "type": "recommended", "evidence": [ { "id": "I3L695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L695" } ] } ], "protein_names": [ { "name": "Left-right determination factor", "type": "recommended", "evidence": [ { "id": "I3L695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L695/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L695", "url": "https://www.uniprot.org/uniprotkb/I3L695" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LEFTY2", "url": "https://www.uniprot.org/uniprotkb/I3L695", "locus": { "chromosome": "10", "start_pos": 13848174, "end_pos": 13853438, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000032299", "url": "https://www.ensembl.org/id/ENSSSCG00000032299" } ] } } ], "crossref": [ { "id": "I3L695", "url": "https://alphafold.ebi.ac.uk/entry/I3L695", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000032299", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032299", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13758", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13758", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017948", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017948", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11848", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11848", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11848:SF226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11848:SF226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00019", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00019", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00688", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00688", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2Q753", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q753", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q753-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q753-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L695", "url": "https://www.uniprot.org/uniprotkb/I3L695", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L695-1", "url": "https://www.uniprot.org/uniprotkb/I3L695-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRALWLCWALWALPLAGPGAALTEQQILGSLLQQLHLSEVPALKADVDGLVIPAHVRAQYVALLQRSHGARSRGKRFSQNFREVVGRFLLSEASTHLLVFDMEQRLPPHSELVQAVLRLFQEPVPKAALRRHERLFPRSDRARVTVQWLHIREDGSNRTSLIDSRLVSIHESGWQALDVTEAVTFWQQLRRPRQPLLLQVSVQREPPGPRGSDAHRLVRFASQGPSGGGQGEPQLELHTLDLRDYGAQGNCDPKVPVTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCQQPPEPLAFRWPFLGPRQCIASETTSLPVIVSIQEGGKPRPQVVSLPNMRVKKCSCAWDGAPVPRKLEP", "length": 366, "header": "tr|I3L695-1|I3L695_PIG Isoform 1 of Left-right determination factor OS=Sus scrofa OX=9823 GN=LEFTY2 PE=3 SV=3 CANONICAL=I3L695-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q753-1", "url": "https://www.uniprot.org/uniprotkb/I3L695/entry#A0A5G2Q753-1", "sequence": { "sequence": "MRALWLCWALWALPLAGPGAALTEQQILGSLLQQLHLSEVPALKADVDGLVIPAHVRAQYVALLQRSHGARSRGKRFSQNFREVVGRFLLSEAALRRHERLFPRSDRARVTVQWLHIREDGSNRTSLIDSRLVSIHESGWQALDVTEAVTFWQQLRRPRQPLLLQVSVQREPPGPRGSDAHRLVRFASQGPSGGGQGEPQLELHTLDLRDYGAQGNCDPKVPVTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCQQPPEPLAFRWPFLGPRQCIASETTSLPVIVSIQEGGKPRPQVVSLPNMRVKKCSCAWDGAPVPRKLEP", "length": 332, "header": "tr|A0A5G2Q753-1|I3L695_PIG Computationally mapped isoform of Left-right determination factor OS=Sus scrofa OX=9823 GN=LEFTY2 PE=3 SV=2 CANONICAL=I3L695-1" }, "locus": { "chromosome": "10", "start_pos": 13853438, "end_pos": 13849055, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072406.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072406.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059873.2", "url": "https://www.ensembl.org/id/ENSSSCP00000059873.2" } ] } }, { "isoform_ac": "I3L695-1", "url": "https://www.uniprot.org/uniprotkb/I3L695/entry#I3L695-1", "sequence": { "sequence": "MRALWLCWALWALPLAGPGAALTEQQILGSLLQQLHLSEVPALKADVDGLVIPAHVRAQYVALLQRSHGARSRGKRFSQNFREVVGRFLLSEASTHLLVFDMEQRLPPHSELVQAVLRLFQEPVPKAALRRHERLFPRSDRARVTVQWLHIREDGSNRTSLIDSRLVSIHESGWQALDVTEAVTFWQQLRRPRQPLLLQVSVQREPPGPRGSDAHRLVRFASQGPSGGGQGEPQLELHTLDLRDYGAQGNCDPKVPVTEGTRCCRQEMYIDLQGMKWAENWVLEPPGFLAYECVGTCQQPPEPLAFRWPFLGPRQCIASETTSLPVIVSIQEGGKPRPQVVSLPNMRVKKCSCAWDGAPVPRKLEP", "length": 366, "header": "tr|I3L695-1|I3L695_PIG Isoform 1 of Left-right determination factor OS=Sus scrofa OX=9823 GN=LEFTY2 PE=3 SV=3 CANONICAL=I3L695-1" }, "locus": { "chromosome": "10", "start_pos": 13853438, "end_pos": 13849055, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031630.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031630.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019546.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019546.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q753", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q753" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "I3L695", "url": "https://www.uniprot.org/uniprotkb/I3L695" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "I3L695", "url": "https://www.uniprot.org/uniprotkb/I3L695" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transforming growth factor beta receptor binding", "id": "GO:0005160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005160", "evidence": [ { "database": "UniProtKB", "id": "I3L695", "url": "https://www.uniprot.org/uniprotkb/I3L695" } ], "pmid": "" }, { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "I3L695", "url": "https://www.uniprot.org/uniprotkb/I3L695" } ], "pmid": "" }, { "name": "cytokine activity", "id": "GO:0005125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005125", "evidence": [ { "database": "UniProtKB", "id": "I3L695", "url": "https://www.uniprot.org/uniprotkb/I3L695" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "BMP signaling pathway", "id": "GO:0030509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030509", "evidence": [ { "database": "UniProtKB", "id": "I3L695", "url": "https://www.uniprot.org/uniprotkb/I3L695" } ], "pmid": "" }, { "name": "anterior/posterior axis specification", "id": "GO:0009948", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009948", "evidence": [ { "database": "UniProtKB", "id": "I3L695", "url": "https://www.uniprot.org/uniprotkb/I3L695" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L695-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 366, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L695-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L695" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L695", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L695" }, { "id": "PS51362", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51362" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TGF-beta family profile", "eco_id": "ECO_0000259", "start_pos": 240, "end_pos": 354, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z527-1", "uniprot_ac": "F2Z527", "uniprot_id": "F2Z527_PIG", "mass": { "chemical_mass": 21575.0, "monoisotopic_mass": 21575.0 }, "refseq": {}, "gene_names": [ { "name": "CIB2", "type": "recommended", "evidence": [ { "id": "F2Z527", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ] } ], "protein_names": [ { "name": "Calcium and integrin-binding family member 2", "type": "recommended", "evidence": [ { "id": "F2Z527", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z527/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CIB2", "url": "https://www.uniprot.org/uniprotkb/F2Z527", "locus": { "chromosome": "7", "start_pos": 47813399, "end_pos": 47788646, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000001762", "url": "https://www.ensembl.org/id/ENSSSCG00000001762" } ] } } ], "crossref": [ { "id": "F2Z527", "url": "https://alphafold.ebi.ac.uk/entry/F2Z527", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000001762", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001762", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45791", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45791", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45791:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45791:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8R2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8R2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8R2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8R2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z527-1", "url": "https://www.uniprot.org/uniprotkb/F2Z527-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNKQTIFTEEQLDNYQDCTFFNKKDILKLHARFYELAPNLVPMDYRKSIVHVPMSLIIQMPELRENPFKERIVEAFSEDGEGNLTFNDFVDMFSVLCESAPRELKANYAFKIYDFNTDNFICKEDLELTLARLTKSELDEDEVVLVCDKVIEEADLDGDGKLGFADFEDMIAKAPDFLSTFHIRI", "length": 186, "header": "tr|F2Z527-1|F2Z527_PIG Isoform 1 of Calcium and integrin-binding family member 2 OS=Sus scrofa OX=9823 GN=CIB2 PE=4 SV=3 CANONICAL=F2Z527-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8R2-1", "url": "https://www.uniprot.org/uniprotkb/F2Z527/entry#A0A5G2Q8R2-1", "sequence": { "sequence": "MGNKQTIFTEEQLDNYQENPFKERIVEAFSEDGEGNLTFNDFVDMFSVLCESAPRELKANYAFKIYDFNTDNFICKEDLELTLARLTKSELDEDEVVLVCDKVIEEADLDGDGKLGFADFEDMIAKAPDFLSTFHIRI", "length": 138, "header": "tr|A0A5G2Q8R2-1|F2Z527_PIG Computationally mapped isoform of Calcium and integrin-binding family member 2 OS=Sus scrofa OX=9823 GN=CIB2 PE=4 SV=1 CANONICAL=F2Z527-1" }, "locus": { "chromosome": "7", "start_pos": 47812745, "end_pos": 47788918, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087316.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087316.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059642.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059642.1" } ] } }, { "isoform_ac": "F2Z527-1", "url": "https://www.uniprot.org/uniprotkb/F2Z527/entry#F2Z527-1", "sequence": { "sequence": "MGNKQTIFTEEQLDNYQDCTFFNKKDILKLHARFYELAPNLVPMDYRKSIVHVPMSLIIQMPELRENPFKERIVEAFSEDGEGNLTFNDFVDMFSVLCESAPRELKANYAFKIYDFNTDNFICKEDLELTLARLTKSELDEDEVVLVCDKVIEEADLDGDGKLGFADFEDMIAKAPDFLSTFHIRI", "length": 186, "header": "tr|F2Z527-1|F2Z527_PIG Isoform 1 of Calcium and integrin-binding family member 2 OS=Sus scrofa OX=9823 GN=CIB2 PE=4 SV=3 CANONICAL=F2Z527-1" }, "locus": { "chromosome": "7", "start_pos": 47812745, "end_pos": 47788918, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000001970.5", "url": "https://www.ensembl.org/id/ENSSSCT00000001970.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000001921.4", "url": "https://www.ensembl.org/id/ENSSSCP00000001921.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8R2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8R2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "integrin binding", "id": "GO:0005178", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005178", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "photoreceptor inner segment", "id": "GO:0001917", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001917", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "sarcolemma", "id": "GO:0042383", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042383", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "photoreceptor outer segment", "id": "GO:0001750", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001750", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "stereocilium", "id": "GO:0032420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032420", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "neuromuscular junction", "id": "GO:0031594", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031594", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "cell periphery", "id": "GO:0071944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071944", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "muscle tendon junction", "id": "GO:0005927", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005927", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "cuticular plate", "id": "GO:0032437", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032437", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of cytosolic calcium ion concentration", "id": "GO:0007204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007204", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "photoreceptor cell maintenance", "id": "GO:0045494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045494", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "calcium ion homeostasis", "id": "GO:0055074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055074", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" }, { "name": "cellular response to ATP", "id": "GO:0071318", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071318", "evidence": [ { "database": "UniProtKB", "id": "F2Z527", "url": "https://www.uniprot.org/uniprotkb/F2Z527" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z527-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 186, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z527-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z527" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z527", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z527" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 65, "end_pos": 100, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L6L8-1", "uniprot_ac": "I3L6L8", "uniprot_id": "I3L6L8_PIG", "mass": { "chemical_mass": 142701.0, "monoisotopic_mass": 142701.0 }, "refseq": {}, "gene_names": [ { "name": "ASTN1", "type": "recommended", "evidence": [ { "id": "I3L6L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6L8" } ] } ], "protein_names": [ { "name": "Astrotactin 1", "type": "synonym", "evidence": [ { "id": "I3L6L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6L8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L6L8", "url": "https://www.uniprot.org/uniprotkb/I3L6L8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASTN1", "url": "https://www.uniprot.org/uniprotkb/I3L6L8", "locus": { "chromosome": "9", "start_pos": 118646910, "end_pos": 118968970, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015513", "url": "https://www.ensembl.org/id/ENSSSCG00000015513" } ] } } ], "crossref": [ { "id": "I3L6L8", "url": "https://alphafold.ebi.ac.uk/entry/I3L6L8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015513", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015513", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020864", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020864", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026995", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026995", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040685", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040685", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16592", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16592", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16592:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16592:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18411", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18411", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19441", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19441", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19743", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19743", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2Q8Y1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q8Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S702", "url": "https://www.uniprot.org/uniprotkb/F1S702", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1S702-1", "url": "https://www.uniprot.org/uniprotkb/F1S702-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6L8", "url": "https://www.uniprot.org/uniprotkb/I3L6L8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6L8-1", "url": "https://www.uniprot.org/uniprotkb/I3L6L8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALAGLCALLACCWGPAAVLATAAGDVDPSKELECKLKSITVSALPFLRENDLSIMHSPSASEPKLLFSVRNDFPGEMVVVDDLENTELPYFVLEISGNTEDIPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEPQHESAEEELRILHISVMGGMIALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIGGHGRESLRNARVQGHNSSGTLSIRETPILDGYEYDITDLRHHLQRECMNGGEDFASQVTRTLDSLQGCNEKAGMDLTPGSDNAKLSLMNKYKDNIIATSPVDANHQQATLLSHTSSSQRKRINNKARAGSAFLNPEGDSSTEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLTLISITSCVIGLVCSSHVSCPLVVKITLHVPEHLIADGSRFILLEGSQLDASDWLNPAQVVLFSQQNSSGPWAMDLCARRLLDPCEHQCDPETGECLCYEGYMKDPVHKHLCIRNEWGTNQGPWPYTIFQRGFDLVLGEQPSDKIFRFTYTLGEGMWLPLSKSFVIPPAELAINPSAKCKTDMTVMEDAVEVREELMTSSSFDSLEVLLDSFGPVRDCSKDNGGCSKNFRCISDRKLDSTGCVCPSGLSPMKDSSGCYDRHIGVDCSDGFNGGCEQLCLQQMAPFPDEPALYNILMFCGCIEDYKLGVDGRSCQLVTETCPEGGDCGESRELPMNQTLFGEMFFGYNNHSKEVAAGQVLKGTFRQNNFARGLDQQLPDGLVVATVPLENQCLEEISEPTPDPDFLTGMVNFSEVSGYPVLQHWKVRSVMYHIKLNQATVSQALSNALHSLDGATSRGDFVALLDQFGNHYIQEAIYGFEESCSIWYPNKQVQRRLWLEYEDISKGNSPSDESEERERDPKVLTFPEYIASLSESGTKRMAAGVRMECQSKGRCPSSCPLCHVTSSPDTPAEPVLLEVTRAAPIYELVTNNQTQRLLLEATMSSLWCSGTGDVIEDWCRCDSTAFGADGLPTCAPLPQPVLRLSTVHEPSSTLVVLEWEHSEPPIGVQIVDYLIRQEKVTDRMDHSKVETETVLSFVDDIISGAKSPCAMPSQVPDKQLTTISLIIRCLEPDTIYMFTLWGVDNTGRRSRPSDVIVKTPCPVVDDVKAQEIADKIYNLFNGYTSGKEQQTAYNTLLDLGSPTLHRVLYHYNQHYESFGEFTWRCEDELGPRKAGLILSQLGDLSSWCNGLLQEPKISLRRSSLKYLGCRYSEIKPYGLDWSELSRDLRKTCEEQTLSIP", "length": 1284, "header": "tr|I3L6L8-1|I3L6L8_PIG Isoform 1 of Astrotactin 1 OS=Sus scrofa OX=9823 GN=ASTN1 PE=4 SV=4 CANONICAL=I3L6L8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q8Y1-1", "url": "https://www.uniprot.org/uniprotkb/I3L6L8/entry#A0A5G2Q8Y1-1", "sequence": { "sequence": "MALAGLCALLACCWGPAAVLATAAGDVDPSKELECKLKSITVSALPFLRENDLSIMHSPSASEPKLLFSVRNDFPGEMVVVDDLENTELPYFVLEISGNTEDIPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEPQHESAEEELRILHISVMGGMIALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIGGHGRESLRNARVQGHNSSGTLSIRETPILDGYEYDITDLRHHLQRECMNGGEDFASQVTRTLDSLQGCNEKAGMDLTPGSDNAKLSLMNKYKDNIIATSPVDANHQQATLLSHTSSSQRKRINNKARAGSAFLNPEGDSSTEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLTLISITSCVIGLVCSSHVSCPLVVKITLHVPEHLIADGSRFILLEGSQLDASDWLNPAQVVLFSQQNSSGPWAMDLCARRLLDPCEHQCDPETGECLCYEGYMKDPVHKHLCIRNEWGTNQGPWPYTIFQRGFDLVLGEQPSDKIFRFTYTLGEGMWLPLSKSFVIPPAELAINPSAKCKTDMTVMEDAVEVREELMTSSSFDSLEVLLDSFGPVRDCSKDNGGCSKNFRCISDRKLDSTGCVCPSGLSPMKDSSGCYDRHIGVDCSDGFNGGCEQLCLQQMAPFPDEPALYNILMFCGCIEDYKLGVDGRSCQLVTETCPEGGDCGESRELPMNQTLFGEMFFGYNNHSKEVAAGQVLKGTFRQNNFARGLDQQLPDGLVVATVPLENQCLEEISEPTPDPDFLTGMVNFSEVSGYPVLQHWKVRSVMYHIKLNQATVSQALSNALHSLDGATSRGDFVALLDQFGNHYIQEAIYGFEESCSIWYPNKQVQRRLWLEYEDISKGNSPSDESEERERDPKVLTFPEYIASLSESGTKRMAAGVRMECQSKGRCPSSCPLCHVTSSPDTPAEPVLLEVTRAAPIYELVTNNQTQRLLLEATMSSLWCSGTGDVIEDWCRCDSTAFGADGLPTCAPLPQPVLRLSTVHEPSSTLVVLEWEHSEPPIGVQIVDYLIRQEKVTDRMDHSKVETETVLSFVDDIISGAKSPCAMPSQVPDKQLTTISLIIRCLEPDTIYMFTLWGVDNTGRRSRPSDVIVKTPCPVVDDVKAQAGEGPRHTWDTPGAQVRGPRCFSTCDLCPQDADRVTYLLHFFFFLYI", "length": 1201, "header": "tr|A0A5G2Q8Y1-1|I3L6L8_PIG Computationally mapped isoform of Astrotactin 1 OS=Sus scrofa OX=9823 GN=ASTN1 PE=4 SV=1 CANONICAL=I3L6L8-1" }, "locus": { "chromosome": "9", "start_pos": 118968577, "end_pos": 118677531, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000068877.1", "url": "https://www.ensembl.org/id/ENSSSCT00000068877.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059727.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059727.1" } ] } }, { "isoform_ac": "F1S702-1", "url": "https://www.uniprot.org/uniprotkb/I3L6L8/entry#F1S702-1", "sequence": { "sequence": "MALAGLCALLACCWGPAAVLATAAGDVDPSKELECKLKSITVSALPFLRENDLSIMHSPSASEPKLLFSVRNDFPGEMVVVDDLENTELPYFVLEISGNTEDIPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEPQHESAEEELRILHISVMGGMIALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIGGHGRESLRNARVQGHNSSGTLSIRETPILDGYEYDITDLRHHLQRECMNGGEDFASQVTRTLDSLQGCNEKAGMDLTPGSDNAKLSLMNKYKDNIIATSPVDANHQQATLLSHTSSSQRKRINNKARAGSAFLNPEGDSSTEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLTLISITSCVIGLVCSSHVSCPLVVKITLHVPEHLIADGSRFILLEGSQLDASDWLNPAQVVLFSQQNSSGPWAMDLCARRLLDPCEHQCDPETGECLCYEGYMKDPVHKHLCIRNEWGTNQGPWPYTIFQRGFDLVLGEQPSDKIFRFTYTLGEGMWLPLSKSFVIPPAELAINPSAKCKTDMTVMEDAVEVREELMTSSSFDSLEVLLDSFGPVRDCSKDNGGCSKNFRCISDRKLDSTGCVCPSGLSPMKDSSGCYDRHIGVDCSDGFNGGCEQLCLQQMAPFPDEPALYNILMFCGCIEDYKLGVDGRSCQLVTETCPEGGDCGESRELPMNQTLFGEMFFGYNNHSKEVAAGQVLKGTFRQNNFARGLDQQLPDGLVVATVPLENQCLEEISEPTPDPDFLTGMVNFSEVSGYPVLQHWKVRSVMYHIKLNQATVSQALSNALHSLDGATSRGDFVALLDQFGNHYIQEAIYGFEESCSIWYPNKQVQRRLWLEYEDISKGNSPSDESEERERDPKVLTFPEYIASLSESGTKRMAAGVRMECQSKGRCPSSCPLCHVTSSPDTPAEPVLLEVTRAAPIYELVTNNQTQRLLLEATMSSLWCSGTGDVIEDWCRCDSTAFGADGLPTCAPLPQPVLRLSTVHEPSSTLVVLEWEHSEPPIGVQIVDYLIRQEKVTDRMDHSKVETETVLSFVDDIISGAKSPCAMPSQVPDKQLTTISLIIRCLEPDTIYMFTLWGVDNTGRRSRPSDVIVKTPCPVVDDVKAQEIADKIYNLFNGYTSGKEQQTAYNTLLDLGSPTLHRVLYHYNQHYESFGEFTWRCEDELGPRLLAWWGNDRTCGR", "length": 1229, "header": "tr|F1S702-1|I3L6L8_PIG Computationally mapped isoform of Astrotactin 1 OS=Sus scrofa OX=9823 GN=ASTN1 PE=4 SV=4 CANONICAL=I3L6L8-1" }, "locus": { "chromosome": "9", "start_pos": 118968577, "end_pos": 118646910, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016900.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016900.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016448.4", "url": "https://www.ensembl.org/id/ENSSSCP00000016448.4" } ] } }, { "isoform_ac": "I3L6L8-1", "url": "https://www.uniprot.org/uniprotkb/I3L6L8/entry#I3L6L8-1", "sequence": { "sequence": "MALAGLCALLACCWGPAAVLATAAGDVDPSKELECKLKSITVSALPFLRENDLSIMHSPSASEPKLLFSVRNDFPGEMVVVDDLENTELPYFVLEISGNTEDIPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEPQHESAEEELRILHISVMGGMIALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIGGHGRESLRNARVQGHNSSGTLSIRETPILDGYEYDITDLRHHLQRECMNGGEDFASQVTRTLDSLQGCNEKAGMDLTPGSDNAKLSLMNKYKDNIIATSPVDANHQQATLLSHTSSSQRKRINNKARAGSAFLNPEGDSSTEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLTLISITSCVIGLVCSSHVSCPLVVKITLHVPEHLIADGSRFILLEGSQLDASDWLNPAQVVLFSQQNSSGPWAMDLCARRLLDPCEHQCDPETGECLCYEGYMKDPVHKHLCIRNEWGTNQGPWPYTIFQRGFDLVLGEQPSDKIFRFTYTLGEGMWLPLSKSFVIPPAELAINPSAKCKTDMTVMEDAVEVREELMTSSSFDSLEVLLDSFGPVRDCSKDNGGCSKNFRCISDRKLDSTGCVCPSGLSPMKDSSGCYDRHIGVDCSDGFNGGCEQLCLQQMAPFPDEPALYNILMFCGCIEDYKLGVDGRSCQLVTETCPEGGDCGESRELPMNQTLFGEMFFGYNNHSKEVAAGQVLKGTFRQNNFARGLDQQLPDGLVVATVPLENQCLEEISEPTPDPDFLTGMVNFSEVSGYPVLQHWKVRSVMYHIKLNQATVSQALSNALHSLDGATSRGDFVALLDQFGNHYIQEAIYGFEESCSIWYPNKQVQRRLWLEYEDISKGNSPSDESEERERDPKVLTFPEYIASLSESGTKRMAAGVRMECQSKGRCPSSCPLCHVTSSPDTPAEPVLLEVTRAAPIYELVTNNQTQRLLLEATMSSLWCSGTGDVIEDWCRCDSTAFGADGLPTCAPLPQPVLRLSTVHEPSSTLVVLEWEHSEPPIGVQIVDYLIRQEKVTDRMDHSKVETETVLSFVDDIISGAKSPCAMPSQVPDKQLTTISLIIRCLEPDTIYMFTLWGVDNTGRRSRPSDVIVKTPCPVVDDVKAQEIADKIYNLFNGYTSGKEQQTAYNTLLDLGSPTLHRVLYHYNQHYESFGEFTWRCEDELGPRKAGLILSQLGDLSSWCNGLLQEPKISLRRSSLKYLGCRYSEIKPYGLDWSELSRDLRKTCEEQTLSIP", "length": 1284, "header": "tr|I3L6L8-1|I3L6L8_PIG Isoform 1 of Astrotactin 1 OS=Sus scrofa OX=9823 GN=ASTN1 PE=4 SV=4 CANONICAL=I3L6L8-1" }, "locus": { "chromosome": "9", "start_pos": 118968577, "end_pos": 118651650, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026733.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026733.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019669.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019669.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q8Y1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q8Y1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neuron migration", "id": "GO:0001764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001764", "evidence": [ { "database": "UniProtKB", "id": "I3L6L8", "url": "https://www.uniprot.org/uniprotkb/I3L6L8" } ], "pmid": "" }, { "name": "neuron cell-cell adhesion", "id": "GO:0007158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007158", "evidence": [ { "database": "UniProtKB", "id": "I3L6L8", "url": "https://www.uniprot.org/uniprotkb/I3L6L8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "I3L6L8", "url": "https://www.uniprot.org/uniprotkb/I3L6L8" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "I3L6L8", "url": "https://www.uniprot.org/uniprotkb/I3L6L8" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "I3L6L8", "url": "https://www.uniprot.org/uniprotkb/I3L6L8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 382, "end_pos": 384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 453, "end_pos": 455, "annotation": "n_glycosylation_sequon" }, { "start_pos": 721, "end_pos": 723, "annotation": "n_glycosylation_sequon" }, { "start_pos": 734, "end_pos": 736, "annotation": "n_glycosylation_sequon" }, { "start_pos": 796, "end_pos": 798, "annotation": "n_glycosylation_sequon" }, { "start_pos": 976, "end_pos": 978, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L6L8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1284, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L6L8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L6L8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L6L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6L8" }, { "id": "SM00181", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 462, "end_pos": 499, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L6L8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6L8" }, { "id": "SM00457", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00457" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MACPF", "eco_id": "ECO_0000259", "start_pos": 803, "end_pos": 991, "start_aa": "Tyr", "end_aa": "Trp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 115, "end_pos": 117 }, { "start_pos": 226, "end_pos": 228 }, { "start_pos": 382, "end_pos": 384 }, { "start_pos": 453, "end_pos": 455 }, { "start_pos": 721, "end_pos": 723 }, { "start_pos": 734, "end_pos": 736 }, { "start_pos": 796, "end_pos": 798 }, { "start_pos": 976, "end_pos": 978 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L6U7-1", "uniprot_ac": "I3L6U7", "uniprot_id": "I3L6U7_PIG", "mass": { "chemical_mass": 83241.0, "monoisotopic_mass": 83241.0 }, "refseq": { "ac": "XP_020919832", "name": "serologically defined colon cancer antigen 8 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919832" }, "gene_names": [ { "name": "SDCCAG8", "type": "recommended", "evidence": [ { "id": "I3L6U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ] }, { "name": "SDCCAG8", "type": "synonym", "evidence": [ { "id": "XP_020919832", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919832" } ] } ], "protein_names": [ { "name": "SHH signaling and ciliosis regulator SDCCAG8", "type": "synonym", "evidence": [ { "id": "I3L6U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6U7/entry#names_and_taxonomy" } ] }, { "name": "serologically defined colon cancer antigen 8 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020919832", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919832" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SDCCAG8", "url": "https://www.uniprot.org/uniprotkb/I3L6U7", "locus": { "chromosome": "10", "start_pos": 16441815, "end_pos": 16191156, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000035136", "url": "https://www.ensembl.org/id/ENSSSCG00000035136" } ] } } ], "crossref": [ { "id": "ENSSSCG00000035136", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035136", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513423", "url": "https://www.ncbi.nlm.nih.gov/gene/100513423", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008954", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008954", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SQEKMYT", "url": "https://omabrowser.org/oma/group/SQEKMYT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR34343", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34343", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34343:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34343:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15964", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15964", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2565942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380259", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380284", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020919832", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020919832", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9T0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2Q9T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9T0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6U7-1", "url": "https://www.uniprot.org/uniprotkb/I3L6U7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKSSENSTLEEILGQYQRSLRERANRSIHQLKSALREGDVTIGEDVLDPSFGTHVGNEDAGTAWRELQHSHAVNQLKALLRQQATEESEVSPRRRKMSPSRSPEHEETNMPTVHNLVAIINDQSQYIHHLEAEVKFCKEELSGMKNRVQVVVLENERLQQELKSQKEEEETMREQTLLDASGNVQNSWITPDVDSRVDEAARRSLSHGNANVINAACAGEAEKWKLELERLKLTYEEKSEILESQLRFLRKELAESQKDCEDLKERLKHKESLLAANVSHRVGGLCLKCAQHEAVLSQTHSNVHIQTIERLTKERDDLMSALVSVRSSLTDVQQREASAFEQVKQAVQMTEEANFEKTKALIQCEQLKNELERQTERLEKELASQQEKRTFEKEMMKKEMTKEREDMRSKVLTLSQNIAQLETQVEKATREKISAVNQLEEIQNQLASQEMDVTKVCGEMRYQLNKIKMEKDDAEKEHREYRTKTKRDLEIKDQEIEKLRLEVSESKQRLEQEQQKATQAREECLKLTELLGESEHQLHLTRLEKDSIQQSFSNEAKAQALQAQQREQELTQKIQQMEAQHDKTESEQYSLLTSQNTFLIKLKEECCTLAKKLEQISQKSRSEIAQLSQEKRYTYDKLEKLQRRNDELEEQCVQHGQLHEIMKQRLKQLDKHGQATAQQLVQLLNKQNQLLQERQSLSEEVGRLRAQLPSMPQSDC", "length": 717, "header": "tr|I3L6U7-1|I3L6U7_PIG Isoform 1 of SHH signaling and ciliosis regulator SDCCAG8 OS=Sus scrofa OX=9823 GN=SDCCAG8 PE=4 SV=4 CANONICAL=I3L6U7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2Q9T0-1", "url": "https://www.uniprot.org/uniprotkb/I3L6U7/entry#A0A5G2Q9T0-1", "sequence": { "sequence": "MAKSSENSTLEEILGQYQRSLRERANRSIHQLKSALREGDVTIGEDVLDPSFGTHVGNEDAGTAWRELQHSHAVNQLKALLRQQATEESEVSPRRRKMSPSRSPEHEETNMPTVHNLVAIINDQSQYIHHLEAEVKFCKEELSGMKNRVQVVVLENERLQQELKSQKEEEETMREQTLLDASGNVQNSWITPDVDSRVDEAARRSLSHGNANVINAACAGEAEKWKLELERLKLTYEEKSEILESQLRFLRKELAESQKDCEDLKERLKHKESLLAANVSHRVGGLCLKCAQHEAVLSQTHSNVHIQTIERLTK", "length": 314, "header": "tr|A0A5G2Q9T0-1|I3L6U7_PIG Computationally mapped isoform of SHH signaling and ciliosis regulator SDCCAG8 OS=Sus scrofa OX=9823 GN=SDCCAG8 PE=4 SV=1 CANONICAL=I3L6U7-1" }, "locus": { "chromosome": "10", "start_pos": 16240730, "end_pos": 16191981, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000077360.2", "url": "https://www.ensembl.org/id/ENSSSCT00000077360.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060724.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060724.1" } ] } }, { "isoform_ac": "I3L6U7-1", "url": "https://www.uniprot.org/uniprotkb/I3L6U7/entry#I3L6U7-1", "sequence": { "sequence": "MAKSSENSTLEEILGQYQRSLRERANRSIHQLKSALREGDVTIGEDVLDPSFGTHVGNEDAGTAWRELQHSHAVNQLKALLRQQATEESEVSPRRRKMSPSRSPEHEETNMPTVHNLVAIINDQSQYIHHLEAEVKFCKEELSGMKNRVQVVVLENERLQQELKSQKEEEETMREQTLLDASGNVQNSWITPDVDSRVDEAARRSLSHGNANVINAACAGEAEKWKLELERLKLTYEEKSEILESQLRFLRKELAESQKDCEDLKERLKHKESLLAANVSHRVGGLCLKCAQHEAVLSQTHSNVHIQTIERLTKERDDLMSALVSVRSSLTDVQQREASAFEQVKQAVQMTEEANFEKTKALIQCEQLKNELERQTERLEKELASQQEKRTFEKEMMKKEMTKEREDMRSKVLTLSQNIAQLETQVEKATREKISAVNQLEEIQNQLASQEMDVTKVCGEMRYQLNKIKMEKDDAEKEHREYRTKTKRDLEIKDQEIEKLRLEVSESKQRLEQEQQKATQAREECLKLTELLGESEHQLHLTRLEKDSIQQSFSNEAKAQALQAQQREQELTQKIQQMEAQHDKTESEQYSLLTSQNTFLIKLKEECCTLAKKLEQISQKSRSEIAQLSQEKRYTYDKLEKLQRRNDELEEQCVQHGQLHEIMKQRLKQLDKHGQATAQQLVQLLNKQNQLLQERQSLSEEVGRLRAQLPSMPQSDC", "length": 717, "header": "tr|I3L6U7-1|I3L6U7_PIG Isoform 1 of SHH signaling and ciliosis regulator SDCCAG8 OS=Sus scrofa OX=9823 GN=SDCCAG8 PE=4 SV=4 CANONICAL=I3L6U7-1" }, "locus": { "chromosome": "10", "start_pos": 16441514, "end_pos": 16191981, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028157.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028157.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019749.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019749.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2Q9T0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2Q9T0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2565942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "resource": "Reactome", "description": "Regulation of PLK1 Activity at G2/M Transition" }, { "id": "R-SSC-380259", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "resource": "Reactome", "description": "Loss of Nlp from mitotic centrosomes" }, { "id": "R-SSC-380270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "resource": "Reactome", "description": "Recruitment of mitotic centrosome proteins and complexes" }, { "id": "R-SSC-380284", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "resource": "Reactome", "description": "Loss of proteins required for interphase microtubule organization from the centrosome" }, { "id": "R-SSC-380320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "resource": "Reactome", "description": "Recruitment of NuMA to mitotic centrosomes" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" }, { "id": "R-SSC-8854518", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "resource": "Reactome", "description": "AURKA Activation by TPX2" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AAA9TVM1-1", "protein_name": "SHH signaling and ciliosis regulator SDCCAG8", "gene_name": "SDCCAG8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKSPENSTLEEILGQYQRSLRERANRSIHQLKCALREGDVTVGEDMLDPSFNTSVGNEDAGNAWRELQHSHAVNQLKALLRQQAAKESEVSLRRQETSPSRSSECEETSMPTVHNLVPIINDQSQYIYHLEAEVKFCKEELSGMKNRVQVVVLENERLQQELKSRGQEEMREQTLLDASGNMQNSWIITGEDSRVDEAAKRSFSCGNASTIKVASAGEAEKWKLELERLKLTYEEKSEILESQLTFLRKDLAEYQKNCEDLKERLKHKESLLAANISNRVGGLCLKCAQHEAVLSQTHNNVHIQTIERLTKERDDLMSVLVSVRNSLTEVQQREASAYKQVKQAVKMTEDASFEKTKALIQCEQLKNELERQTDRLEKELASQQEKRAFEKEMLKKEITKEREDMGSKMLTLSQNIAQLEAEVEKVTREKISAVHQLEEIQNQLASREMDVTKVCEEMRYQLNKTKMEKDEAEKEHREYRTKTKRDLEIKDQEIEKLSLELSESKQRLEQQQEKATRAREECLKLTELLGESEHQLHLTRLEKDSIQQSFSNEAKAQALQAQQREQELTQKIQQMEAQHDKTENEQYSLLTSQNSFLTKLKEECCLLAKKLEQISQKSRSEIAQLSQEKRYTYDKLEKLQRRNDELEEQCVQHGRLHEIMKQRLKQLDKHSHATAQQLVQLLNKQNQLLLERQSLSEEVGHLRSQLPSMPQSDC", "length": 715 }, "evidence": [ { "id": "I3L6U7", "url": "https://omabrowser.org/oma/group/I3L6U7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B8JK76-1", "protein_name": "Serologically defined colon cancer antigen 8 homolog", "gene_name": "Sdccag8", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKPSLESDEEEELGALQKTLRERANRSIQHLSSMLAGHSSDSETSEPNQQELLSSVQQNPCSPVQQSEAVSQLRSLLQMKTKDANIQSLSPSRRKLAAKRATDDGSSSQPGVHNLVPIINNQSEYIQHLEAEVKFCKEELLEMKQRVRVVIVENEKLHHELKAKTIEDTLKEYTFVDSTLNMEHTAENTLKERLGSVNQAEDHKWRKEMEQLKCLYQAQTETLEAQVVSLKKDLACIQKEYEESKERLRHKEAMAVAAGTGQRVSGLCLKCAQHEAVLAETHTNVHVQSIERLTKERDELMTVLCSLRASQTDAQQREWGAYQQVKQAVEMAEEANLEKTRALVQCEHFHNELTRQRERLERELASEQDKISQAREAARSESKKEREELMQTLSSLSQKVAELQGLLDRGERDRNSLNSQLEEAYKKLTVQETDSSKMCAELRFLLSQAQLKKEEAERDVRDISSKLGRQLELAEQEVQKLGVELSGYRQRLEEAQRAEGRARAEAAGLAEGLSRAQRQLHLTRQEKEASERCCGEDMAALTFQAQRRERELTQTLQQMEAQHEKSVRETDALLSAQNSLIRKLKEECHTLGAKLEELAQSSRAEMEQLSLEREHLQESAEKLRGRCEEMEEQCVQHGRMHQRMKQRLQQLDQHCQASSQQVLQLLSRQKQLMQERQQLTEDLHSLKSQVHAGKRMDRLAV", "length": 701 }, "evidence": [ { "id": "I3L6U7", "url": "https://omabrowser.org/oma/group/I3L6U7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80UF4-1", "protein_name": "Serologically defined colon cancer antigen 8 homolog", "gene_name": "Sdccag8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKSPGNSTLEDSLGQYQRSLRERANRSIHQLKCALREVDVTVEEDALDPSTSINVENEDTGVAWHELQHSHAVNQLKALLRQQTNKENETSPPRRRKLSPSRPSECDDGSMPTMHNLVPIINDQSQYIHHLEAEVKFCKDELSGMKNRVQVVVLENERLQQELKSQRPEETLREQTFLDASGNMQNSWIMTREDSRVDEAAKRPFSHGDAETGKTASTGDANKWKLELERLKLTYEAKTDLLESQLMLLRKDLAEYQKTCEDLKERLKHKESLLAASASSRVGGLCLKCAQHEAVLSQTHSNVHIQTIERLTKERDDLMSVLVSVRSSLAEAQKRETSAYEQVKHAVQMTEEANFEKTKALIQCEQLKSELERQTERLEKELASQQEKRAVEKEMIKKEVAREREDAESKMLILSQNIAKLEAQVEKVTREKTAAVSHLEEIQNHVASQEMDVTKVCGEMRFQLNKTKMEKDEVEKEHREYKAKSHKDLEMKVQEIEKLRLELSESEQHVEQEQQKAARARQECLRVTELLGEAERQLHLTRLEKDSIQQSFSNEAKAQALQAQQREQELTQKIQQMETQHDKTESEQYLLLTSQNTFLTKLKEECCLLAKKLEKVSLKSRSQIVRLSQEKRYLCDKLEKLQKRNDELEEQCIQHGRVHETMKERLRQLDKHGQATAQQLVQLLNKQNQLLLERQNLSEEVARLRAQLPSMPQSDC", "length": 717 }, "evidence": [ { "id": "I3L6U7", "url": "https://omabrowser.org/oma/group/I3L6U7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86SQ7-1", "protein_name": "Serologically defined colon cancer antigen 8", "gene_name": "SDCCAG8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKSPENSTLEEILGQYQRSLREHASRSIHQLTCALKEGDVTIGEDAPNLSFSTSVGNEDARTAWPELQQSHAVNQLKDLLRQQADKESEVSPSRRRKMSPLRSLEHEETNMPTMHDLVHTINDQSQYIHHLEAEVKFCKEELSGMKNKIQVVVLENEGLQQQLKSQRQEETLREQTLLDASGNMHNSWITTGEDSGVGETSKRPFSHDNADFGKAASAGEQLELEKLKLTYEEKCEIEESQLKFLRNDLAEYQRTCEDLKEQLKHKEFLLAANTCNRVGGLCLKCAQHEAVLSQTHTNVHMQTIERLVKERDDLMSALVSVRSSLADTQQREASAYEQVKQVLQISEEANFEKTKALIQCDQLRKELERQAERLEKELASQQEKRAIEKDMMKKEITKEREYMGSKMLILSQNIAQLEAQVEKVTKEKISAINQLEEIQSQLASREMDVTKVCGEMRYQLNKTNMEKDEAEKEHREFRAKTNRDLEIKDQEIEKLRIELDESKQHLEQEQQKAALAREECLRLTELLGESEHQLHLTRQEKDSIQQSFSKEAKAQALQAQQREQELTQKIQQMEAQHDKTENEQYLLLTSQNTFLTKLKEECCTLAKKLEQISQKTRSEIAQLSQEKRYTYDKLGKLQRRNEELEEQCVQHGRVHETMKQRLRQLDKHSQATAQQLVQLLSKQNQLLLERQSLSEEVDRLRTQLPSMPQSDC", "length": 713 }, "evidence": [ { "id": "I3L6U7", "url": "https://omabrowser.org/oma/group/I3L6U7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "photoreceptor cell cilium", "id": "GO:0097733", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097733", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "centriolar satellite", "id": "GO:0034451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034451", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "centrosome cycle", "id": "GO:0007098", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007098", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "neuron migration", "id": "GO:0001764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001764", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "establishment of cell polarity", "id": "GO:0030010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030010", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "regulation of cilium assembly", "id": "GO:1902017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902017", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "tube formation", "id": "GO:0035148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035148", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" }, { "name": "microtubule organizing center organization", "id": "GO:0031023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031023", "evidence": [ { "database": "UniProtKB", "id": "I3L6U7", "url": "https://www.uniprot.org/uniprotkb/I3L6U7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 278, "end_pos": 280, "annotation": "n_glycosylation_sequon" }, { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 26, "end_pos": 28 }, { "start_pos": 278, "end_pos": 280 }, { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV80-1", "uniprot_ac": "F1SV80", "uniprot_id": "F1SV80_PIG", "mass": { "chemical_mass": 118088.0, "monoisotopic_mass": 118088.0 }, "refseq": { "ac": "XP_003127824", "name": "zinc finger and SCAN domain-containing protein 20 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127824" }, "gene_names": [ { "name": "ZSCAN20", "type": "recommended", "evidence": [ { "id": "F1SV80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV80" } ] }, { "name": "ZSCAN20", "type": "synonym", "evidence": [ { "id": "XP_003127824", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127824" } ] } ], "protein_names": [ { "name": "Zinc finger and SCAN domain-containing protein 20", "type": "recommended", "evidence": [ { "id": "F1SV80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV80/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger protein 31", "type": "synonym", "evidence": [ { "id": "F1SV80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV80/entry#names_and_taxonomy" } ] }, { "name": "zinc finger and SCAN domain-containing protein 20 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003127824", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127824" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC43#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "F1SV80", "url": "https://www.uniprot.org/uniprotkb/F1SV80#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV80", "url": "https://www.uniprot.org/uniprotkb/F1SV80" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZSCAN20", "url": "https://www.uniprot.org/uniprotkb/F1SV80", "locus": { "chromosome": "6", "start_pos": 89754719, "end_pos": 89732654, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003621", "url": "https://www.ensembl.org/id/ENSSSCG00000003621" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003621", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003621", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522553", "url": "https://www.ncbi.nlm.nih.gov/gene/100522553", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044822", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044822", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050916", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522553", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522553", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KLQTCHQ", "url": "https://omabrowser.org/oma/group/KLQTCHQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV80", "url": "https://www.orthodb.org/?gene=F1SV80", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45935", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45935", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45935:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45935:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13837", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13837", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127824", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127824", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QC43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QC43-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV80", "url": "https://www.uniprot.org/uniprotkb/F1SV80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV80-1", "url": "https://www.uniprot.org/uniprotkb/F1SV80-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVALESQAQASPRSEPEELLIVKLEEDSWRPDSQPQEKDLNPVPGPEASRQRFRQFQYRDAAGPHEAFSQLWALCCHWLRPEIRLKEQILELLVLEQFLTILPREVQAWVQARHPESGEEAVALVEDWHREAQAAGQQELELCAEETRSLKTVKESQSFPLQPADHQPEGQSQKQWVKNPCPDFPKHLDTKMVPQPLKESAVLTPRVPALPKMGSVGDWEVTAESQEALGPGRHAEKEFCRDPPGDSCGNGVPLGVPVSKPAIISQRDHGPEFWGPGLINSGEKSPADYRDTEQAKPAQALAWRDSKAWEERSRWEVEDVKVSGVHWSYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAERLRARGFLRTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVKARAALRASGGHGAAVALPRLGDSDMEVDEQEEGGWEPEETAEDCNGDDLTTEESGQGPRIPGGPAMFQSRIAGVHWGYEETKAFLTILSESPFSEKLRTCHQNSQVYRAIAERLCAQGFLRTLEQCRYRFKNLLRSYRKAKSSHPPGTCPFYEELDSLMRARTAVRDVATSKEVAGLPTSGQSSAEAVNQEAWDEMADEDAIKPPIPSPKILDTGFEMRHEDEDQISEQDIFEDLPGALSTCAAENNCYPHDWGEDSENENEGKGRWGNPSQEQWEECSSEEDLEKLIDQQGLYLAEKPYKCDMCVKSFSRNSQLIAHQRTHTGEKPYKCLECGRSFSDRSNFNTHQRIHTGEKPYRCLECGKSFSDHSNLITHQRTHTRVKPYKCGECWESFTQSSNLLKHQRTHMGGNPDPCREPGGNSSQSPSFPLHWRTSVQETSPGQPRSASKNVHSPGPPSTNSGERFYECSECGRCFSKSSALISHQRIHTGQKPYECAECGKSFSKSSTLANHQRTHTGEKPFECADCGKCFGERSKLITHQRVHTGEKPYKCLECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLIIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHAAGKAS", "length": 1045, "header": "tr|F1SV80-1|F1SV80_PIG Isoform 1 of Zinc finger and SCAN domain-containing protein 20 OS=Sus scrofa OX=9823 GN=ZSCAN20 PE=3 SV=2 CANONICAL=F1SV80-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QC43-1", "url": "https://www.uniprot.org/uniprotkb/F1SV80/entry#A0A5G2QC43-1", "sequence": { "sequence": "MEVALESQAQASPRSEPEELLIVKLEEDSWRPDSQPQEKDLNPVPGPEASRQRFRQFQYRDAAGPHEAFSQLWALCCHWLRPEIRLKEQILELLVLEQFLTILPREVQAWVQARHPESGEEAVALVEDWHREAQAAGQQELELCAEETRSLKTVKESQSFPLQPADHQPEGQSQKQWVKNPCPDFPKHLDTKMVPQPLKESGVPVSKPAIISQRDHGPEFWGPGLINSGEKSPADYRDTEQAKPAQALAWRDSKAWEERSRWEVEDVKVSGVHWSYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAERLRARGFLRTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVKARAALRASGGHGAAVALPRLGDSDMEVDEQEEGGWEPEETAEDCNGDDLTTEESGQGPRIPGGPAMFQSRIGKNTGA", "length": 435, "header": "tr|A0A5G2QC43-1|F1SV80_PIG Computationally mapped isoform of Zinc finger and SCAN domain-containing protein 20 OS=Sus scrofa OX=9823 GN=ZSCAN20 PE=3 SV=1 CANONICAL=F1SV80-1" }, "locus": { "chromosome": "6", "start_pos": 89748272, "end_pos": 89739299, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090156.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090156.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061084.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061084.1" } ] } }, { "isoform_ac": "F1SV80-1", "url": "https://www.uniprot.org/uniprotkb/F1SV80/entry#F1SV80-1", "sequence": { "sequence": "MEVALESQAQASPRSEPEELLIVKLEEDSWRPDSQPQEKDLNPVPGPEASRQRFRQFQYRDAAGPHEAFSQLWALCCHWLRPEIRLKEQILELLVLEQFLTILPREVQAWVQARHPESGEEAVALVEDWHREAQAAGQQELELCAEETRSLKTVKESQSFPLQPADHQPEGQSQKQWVKNPCPDFPKHLDTKMVPQPLKESAVLTPRVPALPKMGSVGDWEVTAESQEALGPGRHAEKEFCRDPPGDSCGNGVPLGVPVSKPAIISQRDHGPEFWGPGLINSGEKSPADYRDTEQAKPAQALAWRDSKAWEERSRWEVEDVKVSGVHWSYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAERLRARGFLRTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVKARAALRASGGHGAAVALPRLGDSDMEVDEQEEGGWEPEETAEDCNGDDLTTEESGQGPRIPGGPAMFQSRIAGVHWGYEETKAFLTILSESPFSEKLRTCHQNSQVYRAIAERLCAQGFLRTLEQCRYRFKNLLRSYRKAKSSHPPGTCPFYEELDSLMRARTAVRDVATSKEVAGLPTSGQSSAEAVNQEAWDEMADEDAIKPPIPSPKILDTGFEMRHEDEDQISEQDIFEDLPGALSTCAAENNCYPHDWGEDSENENEGKGRWGNPSQEQWEECSSEEDLEKLIDQQGLYLAEKPYKCDMCVKSFSRNSQLIAHQRTHTGEKPYKCLECGRSFSDRSNFNTHQRIHTGEKPYRCLECGKSFSDHSNLITHQRTHTRVKPYKCGECWESFTQSSNLLKHQRTHMGGNPDPCREPGGNSSQSPSFPLHWRTSVQETSPGQPRSASKNVHSPGPPSTNSGERFYECSECGRCFSKSSALISHQRIHTGQKPYECAECGKSFSKSSTLANHQRTHTGEKPFECADCGKCFGERSKLITHQRVHTGEKPYKCLECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLIIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHAAGKAS", "length": 1045, "header": "tr|F1SV80-1|F1SV80_PIG Isoform 1 of Zinc finger and SCAN domain-containing protein 20 OS=Sus scrofa OX=9823 GN=ZSCAN20 PE=3 SV=2 CANONICAL=F1SV80-1" }, "locus": { "chromosome": "6", "start_pos": 89753166, "end_pos": 89739299, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004017.3", "url": "https://www.ensembl.org/id/ENSSSCT00000004017.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003926.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003926.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QC43", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QC43" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522553", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522553", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FEF6-1", "protein_name": "Zinc finger and SCAN domain-containing protein 20 isoform X1", "gene_name": "Zscan20", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVASPPLESEDLLIVKLEEDSWGSDAKHQQEVQGRIPGPEVSRLCFRQFQYQDAAGPHEAFSQLWALCCRWLRPEIRLKEQILELLVLEQFLSILPREVQTWVQARHPESGEEAVALVEDWHRGALATRQQGLELCAEESRSFEAVPEFQSFQLQPVAHCSEAQPQKEWNTHPDLSKVPPQLLKESVVHIPQAPAIPKPGSTGDWEVAAKSQEAWSPHRQTKEKVCQDPAGDDYGNSMCLGVPVSKPSVTSQHEQGPEILGLSLINSGNGSPADYSLDSEQNKPAQEDSRAWEEQCQCDGEDVKVSGVHWSYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAERLRERGFFRTLEQCRYRVKNLLRNYRKAKNSHPPGTCPFYEELEALVRAQATIRRTSSGPGEAVAFPRLGDSDTEMDDQEEGSWEPEEATEDCNGSGLATEESVQGPRISGGPAVLPSRIARLSLERGREDALADLPSIPLRSKFVFSAGVHWGFEETKAFLAILSESPFSEKLRTCHQNSQIYRAIAERLCALGFLRTLEQCRYRFKNLLRSYRKAKSSRPPGTCPFYEELDSLMRARTVIRAMEIVGEARGLPGSGQSGTEADDQEAWGEMEDEDAIKLLPDSQTPDTGFDWKHEDEDQTSEQDVFGDLPGALSKYTTEAVCQPPDWGEDNDNENEDEDEGEWRSAPLWEECSSEEDLEKLIDHQGLYLTEKAYRCDTWVKNCSRSFHFMAQPGTYPGEKPYKCLECGKSFSERSNLSAHQRTHAGEKPSRCLECGKGFRDHSSLIAHQRSHTGEKPYTCGECWKSFKQISNLLKHQRLHSGGNPDQCNEPGENFSQSPSFSAQWRSSSQEIPKEAQDVSGSMNSPGPCSTNSGEKLYPCPECGRCFSKSSALISHQRIHTGEKPHECRECGKSFSKSSTLANHQRTHTGEKPYKCADCGKCFSERSKLTTHHRVHTGEKPYRCLECGKFFRDRSNLITHQRIHTGEKPYKCGECGKRFNQSSSLIIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHAGGKAL", "length": 1055 }, "evidence": [ { "id": "F1SV80", "url": "https://omabrowser.org/oma/group/F1SV80/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "B2KFW1-1", "protein_name": "Zinc finger and SCAN domain-containing protein 20", "gene_name": "Zscan20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMAVASPPPEPEDLLIVKLEEDSWGSDSRPEKESHSPVPGPEVSRRCFRQFRYRDAAGPHEAFSQLWALCCRWLRPELRLKEQILELLVLEQFLSILPREVQTWVQARHPESGEEAVALVEDWHREAWAAGQQGLELCSEDSRSFEAVQEFQRFQLQPVTHGSEGQPRKQWVENARPDLSKMPPESLKESAVLTPQAPTVPKMASIGDWEVAGKSQETPSPSRQAKKEPCQDPAGGDRGDSACLGVPASKPSATSQQEQGPEIWGLSLINSGNGSAADDSLDSAQDKPVQAVAQADSRAWGEPCQWGAEDMKVSGVHWGYEETKTFLAILSESPFSEKLQTCHQNRQVYRAIAERLRARGFLRTLEQCRYRVKNLLRNYRKAKNSHPPGTCPFYEELEALVRARTAIRRTSGGPGEAVALPRLGDSDTEMDDQDEGSWEPEETVEDCSGSGLAAEESLQGPRIAGGPALLQSRIAGVHWGFEETKVFLAILSESPFAEKLRTCHQNSQIYRAIAERLRALGFLRTLEQCRYRFKNLLRSYRKAKSSCPPGTCPFYEEMDSLMRARTVIRAVEMVGEATGLPGSGQSSTEADDQEAWGEMEDEDAVRLLTPDSQPADAGFELKREEEDQISEQDVLGDLPGALSRYTTKAVCQPCDWGEDHVNGNEGEWRNTWEECSSEEDLEKLIDHQGLYLTEKPYGCDTRAKSFSRKVHFFAPQRTHSSEKPYKCLGSGKSFSDRANLSTHQRIHIGEKPYRCLECGKSFNDPSNLITHQRTHTGEKPYKCGLCWKSFNQSSNLLKHQRVHLGGPPNQRDEPGENFGQSLSYSAHWRRNSTQEGPKEPQNISMGADSPGACHPNSGEKLYSCPECGRCFSKSSALTSHQRIHSGEKPYECAVCGKSFSKSSSLANHRRTHTGEKPHKCADCGKCFSERSKLITHQRVHTGEKPYECPECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLIIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHAGGKAL", "length": 1030 }, "evidence": [ { "id": "F1SV80", "url": "https://omabrowser.org/oma/group/F1SV80/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZCC2-1", "protein_name": "Zinc finger and SCAN domain containing 20", "gene_name": "Zscan20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPFGSCGLRGRVPGLAAPGLCVPAFPARAREHFRPVVKWVSLWVSLGGGWGAAETQALGWRLWSLGEQSLPRSTHRQCRKPPDEDDPAKVEHPGQMMAVASPPPEPEDLLIVKLEEDSWGSRSRPEESSHSSVPGPEVSRLCFRQFQYQDAAGPHEAFSQLWALCCRWLRPELRLKEQILELLVLEQFLSILPREVQTWVQARHPESGEEAVALVEDWHREAWAAGQQGLELCTEDTRSFEAVQEFQRFQLQPVAHCSERQPQKQRVEKTHPGLSKMPPESLKESAVFTPQAPSVPKMASAGDWEMAAKSQETLSPSRQAQEEPCQDPEGEDCGNSACLGVPASKPSVASQHEQGAETLGLSLLNFGTGSAADGSVDSEQDKAARGAAQADARAWVEPCQWGTEDMKVSGVHWGYEETKAFLAILSESPFSEKLQTCHQNRQVYRAIAERLRARGFLRTLEQCRYRVKNLLRNYRKAKNSRPPGTCPFYEELEALVRARTAIRRTTGGPGEAVALARLGDSDTEMDDQDEGSWESEEATQDCSGSGLAAEESIHGPRIAGGPALLQSRIAGMHWGFEETKVFLAILSESPFSEKLRTCHQNSQIYRAIAERLRALGFLRTLEQCRYRFKNLLRSYRKAKSSRPPGICPFYEEMDSLMRARTVIRAMETVGEAIGLPGPGQSGTEADDQEAWGEMEDAGAIRLLTPDSQTPGFELKPEDEYQISERDDLGDSPGALSRYTREAVCQPHGWREDHENGDEGEWRNTLPWDECSSEEDLEKLIDHQGLYLTEEPYRCDTHVKSFSRKVHCFAPQRIHAGEKPYKCLDTGKSFSDHANLSTHQRIHVGEKPYRCLECGKSFNDPSNLITHQRTHTGEKPYKYGVCWKSFTESSNRLKPQRIHLQGTPDQRNEPGEDFGQSPSFSAYWRDSTRERPKQPQNISMGADSPGACHPNSGEKLYPCPECGRCFSKNSALMSHQRIHTGEKPYECVECGRSFSKSSSLANHLRTHTGEKPHKCADCGKCFSERSKLITHHRVHTGEKPYKCPECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLNIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHTGGKAPPN", "length": 1126 }, "evidence": [ { "id": "F1SV80", "url": "https://omabrowser.org/oma/group/F1SV80/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P17040-1", "protein_name": "Zinc finger and SCAN domain-containing protein 20", "gene_name": "ZSCAN20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAMALELQAQASPQPEPEELLIVKLEEDSWGSESKLWEKDRGSVSGPEASRQRFRQFQYRDAAGPHEAFSQLWALCCRWLRPEIRLKEQILELLVLEQFLTILPREVQTWVQARHPESGEEAVALVEDWHRETRTAGQSGLELHTEETRPLKTGEEAQSFQLQPVDPWPEGQSQKKGVKNTCPDLPNHLNAEVAPQPLKESAVLTPRVPTLPKMGSVGDWEVTAESQEALGPGKHAEKELCKDPPGDDCGNSVCLGVPVSKPSNTSEKEQGPEFWGLSLINSGKRSTADYSLDNEPAQALTWRDSRAWEEQYQWDVEDMKVSGVHWGYEETKTFLAILSESPFSEKLRTCHQNRQVYRAIAEQLRARGFLRTLEQCRYRVKNLLRNYRKAKSSHPPGTCPFYEELEALVRARTAIRATDGPGEAVALPRLGYSDAEMDEQEEGGWDPEEMAEDCNGAGLVNVESTQGPRIAGAPALFQSRIAGVHWGYEETKAFLAILSESPFSEKLRTCHQNSQVYRAIAERLCALGFLRTLEQCRYRFKNLLRSYRKAKSSHPPGTCPFYEELDSLMRARAAVRAMGTVREAAGLPRCGQSSAETDAQEAWGEVANEDAVKPSTLCPKAPDMGFEMRHEDEDQISEQDIFEGLPGALSKCPTEAVCQPLDWGEDSENENEDEGQWGNPSQEQWQESSSEEDLEKLIDHQGLYLAEKPYKCDTCMKSFSRSSHFIAHQRIHTGEKPYKCLECGKNFSDRSNLNTHQRIHTGEKPYKCLECGKSFSDHSNLITHQRIHTGEKPYKCGECWKSFNQSSNLLKHQRIHLGGNPDQCSEPGGNFAQSPSFSAHWRNSTEETAPEQPQSISKDLNSPGPHSTNSGEKLYECSECGRSFSKSSALISHQRIHTGEKPYECAECGKSFSKSSTLANHQRTHTGEKPYKCVDCGKCFSERSKLITHQRVHTGEKPYKCLECGKFFRDRSNLITHQRIHTGEKPYKCRECGKCFNQSSSLIIHQRIHTGEKPYKCTECGKDFNNSSHFSAHRRTHAGGKAS", "length": 1043 }, "evidence": [ { "id": "F1SV80", "url": "https://omabrowser.org/oma/group/F1SV80/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SV80", "url": "https://www.uniprot.org/uniprotkb/F1SV80" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SV80", "url": "https://www.uniprot.org/uniprotkb/F1SV80" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SV80", "url": "https://www.uniprot.org/uniprotkb/F1SV80" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SV80", "url": "https://www.uniprot.org/uniprotkb/F1SV80" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SV80", "url": "https://www.uniprot.org/uniprotkb/F1SV80" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SV80", "url": "https://www.uniprot.org/uniprotkb/F1SV80" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1027, "end_pos": 1029, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1028, "end_pos": 1030, "annotation": "n_glycosylation_sequon" }, { "start_pos": 832, "end_pos": 834, "annotation": "n_glycosylation_sequon" }, { "start_pos": 999, "end_pos": 1001, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV80" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 712, "end_pos": 739, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV80", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV80" }, { "id": "PS50804", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50804" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SCAN box", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 132, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1027, "end_pos": 1029 }, { "start_pos": 1028, "end_pos": 1030 }, { "start_pos": 832, "end_pos": 834 }, { "start_pos": 999, "end_pos": 1001 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUA0-1", "uniprot_ac": "F1SUA0", "uniprot_id": "F1SUA0_PIG", "mass": { "chemical_mass": 47744.0, "monoisotopic_mass": 47744.0 }, "refseq": { "ac": "XP_005662334", "name": "fibulin-7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662334" }, "gene_names": [ { "name": "FBLN7", "type": "recommended", "evidence": [ { "id": "F1SUA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" } ] }, { "name": "FBLN7", "type": "synonym", "evidence": [ { "id": "XP_005662334", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662334" } ] } ], "protein_names": [ { "name": "Fibulin-7", "type": "recommended", "evidence": [ { "id": "F1SUA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUA0/entry#names_and_taxonomy" } ] }, { "name": "fibulin-7", "type": "synonym", "evidence": [ { "id": "XP_005662334", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662334" } ] } ], "function": [ { "annotation": "An adhesion molecule that interacts with extracellular matrix molecules in developing teeth and may play important roles in differentiation and maintenance of odontoblasts as well as in dentin formation.", "evidence": [ { "database": "UniProtKB", "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0#function" }, { "database": "UniProtKB", "id": "ARBA00055348", "url": "https://www.uniprot.org/uniprotkb/ARBA00055348#function" }, { "database": "UniProtKB", "id": "A0A5G2R9R4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9R4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBLN7", "url": "https://www.uniprot.org/uniprotkb/F1SUA0", "locus": { "chromosome": "3", "start_pos": 44214000, "end_pos": 44266921, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008101", "url": "https://www.ensembl.org/id/ENSSSCG00000008101" } ] } } ], "crossref": [ { "id": "F1SUA0", "url": "https://alphafold.ebi.ac.uk/entry/F1SUA0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008101", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008101", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00033", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00033", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102162371", "url": "https://www.ncbi.nlm.nih.gov/gene/102162371", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000436", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000436", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026823", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026823", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035976", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035976", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051277", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051277", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102162371", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162371", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUA0", "url": "https://www.orthodb.org/?gene=F1SUA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24034", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24034", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24034:SF94", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24034:SF94", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45656", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45656", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45656:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45656:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00008", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00008", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00084", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00084", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12662", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12662", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22914", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22914", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005662334", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662334", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QGX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QGX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9R4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9R4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9R4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9R4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVPNCPRALFLLLLFLACPESRASQNCLNKQQLLSAIRQLQQLLKGQETRFAEGVRHMKSRLAALQTSVNRANPDTPPVSCPALSAPPDGRKFGSKYFVDHEVHFTCNPGFRLIGPSSLACLPNGTWTGEQPRCRDISECSSQPCQNGGTCVEGVNQYKCICPLGRTGSRCQHQAQTAAPDGSENGDHAFSRAPRCAQVERAQHCSCEAGFHLSGAAGDSVCQDVNECELYGQEGRPRLCMHACVNTPGSYRCACPSGYRTLADGKSCEDIDECVSPQPVCPRGTVCINTGGGFQCVSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKTPITLFRMATASAPGRPGPNSLRFGIVGGNSRGHFVMQRSDRQTGELILVQTLEGPQTLEVDVDMSEYLDRSFQANHVSKVTIFVSPYDF", "length": 439, "header": "tr|F1SUA0-1|F1SUA0_PIG Isoform 1 of Fibulin-7 OS=Sus scrofa OX=9823 GN=FBLN7 PE=3 SV=4 CANONICAL=F1SUA0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QGX3-1", "url": "https://www.uniprot.org/uniprotkb/F1SUA0/entry#A0A5G2QGX3-1", "sequence": { "sequence": "MVPNCPRALFLLLLFLACPESRASQNCLNKQQLLSAIRQLQQLLKGQETRFAEGVRHMKSRLAALQTSVNRANPDTPPVSCPALSAPPDGRKFGSKYFVDHEVHFTCNPGFRLIGPSSLACLPNGTWTGEQPRCRDIDECVSPQPVCPRGTVCINTGGGFQCVSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKTPITLFRMATASAPGRPGPNSLRFGIVGGNSRGHFVMQRSDRQTGELILVQTLEGPQTLEVDVDMSEYLDRSFQANHVSKVTIFVSPYDF", "length": 305, "header": "tr|A0A5G2QGX3-1|F1SUA0_PIG Computationally mapped isoform of Fibulin-7 OS=Sus scrofa OX=9823 GN=FBLN7 PE=3 SV=1 CANONICAL=F1SUA0-1" }, "locus": { "chromosome": "3", "start_pos": 44266704, "end_pos": 44215695, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069940.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069940.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000061262.1", "url": "https://www.ensembl.org/id/ENSSSCP00000061262.1" } ] } }, { "isoform_ac": "A0A5G2R9R4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUA0/entry#A0A5G2R9R4-1", "sequence": { "sequence": "MVPNCPRALFLLLLFLACPESRASQNCLNKQQLLSAIRQLQQLLKGQETRFAEGVRHMKSRLAALQTSVNRANPDTPPVSCPALSAPPDGRKFGSKYFVDHEVHFTCNPGFRLIGPSSLACLPNGTWTGEQPRCRDISECSSQPCQNGGTCVEGVNQYKCICPLGRTGSRCQHQAQTDVNECELYGQEGRPRLCMHACVNTPGSYRCACPSGYRTLADGKSCEDIDECVSPQPVCPRGTVCINTGGGFQCVSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKTPITLFRMATASAPGRPGPNSLRFGIVGGNSRGHFVMQRSDRQTGELILVQTLEGPQTLEVDVDMSEYLDRSFQANHVSKVTIFVSPYDF", "length": 393, "header": "tr|A0A5G2R9R4-1|F1SUA0_PIG Computationally mapped isoform of Fibulin-7 OS=Sus scrofa OX=9823 GN=FBLN7 PE=3 SV=1 CANONICAL=F1SUA0-1" }, "locus": { "chromosome": "3", "start_pos": 44266704, "end_pos": 44215695, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090554.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090554.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000070874.1", "url": "https://www.ensembl.org/id/ENSSSCP00000070874.1" } ] } }, { "isoform_ac": "F1SUA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUA0/entry#F1SUA0-1", "sequence": { "sequence": "MVPNCPRALFLLLLFLACPESRASQNCLNKQQLLSAIRQLQQLLKGQETRFAEGVRHMKSRLAALQTSVNRANPDTPPVSCPALSAPPDGRKFGSKYFVDHEVHFTCNPGFRLIGPSSLACLPNGTWTGEQPRCRDISECSSQPCQNGGTCVEGVNQYKCICPLGRTGSRCQHQAQTAAPDGSENGDHAFSRAPRCAQVERAQHCSCEAGFHLSGAAGDSVCQDVNECELYGQEGRPRLCMHACVNTPGSYRCACPSGYRTLADGKSCEDIDECVSPQPVCPRGTVCINTGGGFQCVSPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKTPITLFRMATASAPGRPGPNSLRFGIVGGNSRGHFVMQRSDRQTGELILVQTLEGPQTLEVDVDMSEYLDRSFQANHVSKVTIFVSPYDF", "length": 439, "header": "tr|F1SUA0-1|F1SUA0_PIG Isoform 1 of Fibulin-7 OS=Sus scrofa OX=9823 GN=FBLN7 PE=3 SV=4 CANONICAL=F1SUA0-1" }, "locus": { "chromosome": "3", "start_pos": 44266704, "end_pos": 44215695, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008874.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008874.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008648.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008648.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QGX3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QGX3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102162371", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162371", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" } ], "pmid": "" }, { "name": "heparin binding", "id": "GO:0008201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008201", "evidence": [ { "database": "UniProtKB", "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" } ], "pmid": "" }, { "name": "heparan sulfate proteoglycan binding", "id": "GO:0043395", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043395", "evidence": [ { "database": "UniProtKB", "id": "F1SUA0", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUA0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 439, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUA0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUA0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 136, "end_pos": 172, "start_aa": "Asp", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUA0" }, { "id": "PS50923", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50923" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sushi", "eco_id": "ECO_0000259", "start_pos": 79, "end_pos": 136, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 }, { "start_pos": 307, "end_pos": 309 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSP1-1", "uniprot_ac": "F1SSP1", "uniprot_id": "F1SSP1_PIG", "mass": { "chemical_mass": 126167.0, "monoisotopic_mass": 126167.0 }, "refseq": { "ac": "XP_020957924", "name": "WD repeat and HMG-box DNA-binding protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957924" }, "gene_names": [ { "name": "WDHD1", "type": "recommended", "evidence": [ { "id": "F1SSP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ] }, { "name": "WDHD1", "type": "synonym", "evidence": [ { "id": "XP_020957924", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957924" } ] } ], "protein_names": [ { "name": "WD repeat and HMG-box DNA-binding protein 1", "type": "recommended", "evidence": [ { "id": "F1SSP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSP1/entry#names_and_taxonomy" } ] }, { "name": "Acidic nucleoplasmic DNA-binding protein 1", "type": "synonym", "evidence": [ { "id": "F1SSP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSP1/entry#names_and_taxonomy" } ] }, { "name": "WD repeat and HMG-box DNA-binding protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020957924", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957924" } ] } ], "function": [ { "annotation": "Core replisome component that acts as a replication initiation factor. Binds directly to the CMG complex and functions as a hub to recruit additional proteins to the replication fork.", "evidence": [ { "database": "UniProtKB", "id": "I3L908", "url": "https://www.uniprot.org/uniprotkb/I3L908#function" }, { "database": "UniProtKB", "id": "ARBA00056293", "url": "https://www.uniprot.org/uniprotkb/ARBA00056293#function" }, { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDHD1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1", "locus": { "chromosome": "1", "start_pos": 184300293, "end_pos": 184378959, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005052", "url": "https://www.ensembl.org/id/ENSSSCG00000005052" } ] } } ], "crossref": [ { "id": "F1SSP1", "url": "https://alphafold.ebi.ac.uk/entry/F1SSP1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005052", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005052", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21993", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21993", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100152808", "url": "https://www.ncbi.nlm.nih.gov/gene/100152808", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022100", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022100", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055339", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055339", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057646", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057646", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152808", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152808", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RYAHTNG", "url": "https://omabrowser.org/oma/group/RYAHTNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSP1", "url": "https://www.orthodb.org/?gene=F1SSP1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19932", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19932", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19932:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19932:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12341", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12341", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20946", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20946", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24815", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24815", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24817", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24817", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020957924", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020957924", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QHD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSP1-1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L908", "url": "https://www.uniprot.org/uniprotkb/I3L908", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L908-1", "url": "https://www.uniprot.org/uniprotkb/I3L908-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPATQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWEDLDDDDPKSINVGEKAYSCALKNGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVIFNEDGTKIAAGSSDFLVKVVDVMDCSQQKTFRGHDAPVLSLSFDPKDIFLASSSCDGSVKVWQISDQTCAISWPLLQKCNDVINAKSICRLAWQPKSGKLLAVPVEKSVKLYRRETWSNQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLSWHPTCGQIAYTDAEGNLGLLENVCDPNGKMSGSKVSSRVERDYNDLFDGDDTGNVGDFPNDNAVETHSFSKETRNDEEDDDDLMLASGRPRQRSHILEDDENSVDVTMLKTGSSRLKEEEEDDQAGNIHSLPLITSQKPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSNTLNYTVADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIVDMPPNEDIEAVCLGQGWAAAATSSLLLRLFTIGGVQKEVFSLPGPVVSMAGHGEQLIIVYHRGTGFDGDQCLGIQLLQLGKKKKQILHGDPLPLTRKSYLVWLGFSAEGTPCYVDSEGIVRMLNRGLGYTWTPICNTREHCKGKSDHYWVVGIHENPQHLRCIPCKGSRFPPTLPRPAIAVLSFKLPYCQTGTEKGQMEEQYWRSVLFHNHLDYLAKSGYEYEESTKNQAIKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVNLAIKYASRSRRLILAQKLSELAVEKAAELAAPQAEEEEEEEEDFRKKLNAGYSNTPTEWSQPRLRNRVEEDTEDTEEVDDIEEKPEIHKHRQNPFFKSADSTDVPAIKSGAVTSSSQGRINPFKVSGSSKEPANSFSSVRSTNILDNMNKSKKSALNRATNNEKSPVIKPLVPKPKSKQASAASFFQKRTSQTDKTEEIKEENTKNSSSETPAVCPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMVRFRVLSAEERKAWAAKAKGGIASDGAEEKKRKRVVDESHETENQEEKTKENLNLPKKQKPLNLSANQKLSAFAFKQE", "length": 1129, "header": "tr|F1SSP1-1|F1SSP1_PIG Isoform 1 of WD repeat and HMG-box DNA-binding protein 1 OS=Sus scrofa OX=9823 GN=WDHD1 PE=4 SV=3 CANONICAL=F1SSP1-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHD6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1/entry#A0A5G2QHD6-1", "sequence": { "sequence": "MPATQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWEDLDDDDPKSINVGEKAYSCALKNGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVIFNEDGTKIAAGSSDFLVKVVDVMDCSQQKTFRGHDAPVLSLSFDPKDIFLASSSCDGSVKVWQISDQTCAISWPLLQKCNDVINAKSICRLAWQPKSGKLLAVPVEKSVKLYRRETWSNQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLSWHPTCGQIAYTDAEGNLGLLENVCDPNGKMSGSKVSSRVERDYNDLFDGDDTGNVGDFPNDNAVETHSFSKETRNDEEDDDDLMLASGRPRQRSHILEDDENSVDVTMLKTGSSRLKEEEEDDQAGNIHSLPLITSQKPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSNTLNYTVADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIVDMPPNEDIEAVCLGQGWAAAATSSLLLRLFTIGGVQKEVFSLPGPVVSMAGHGEQLIIVYHRGTGFDGDQCLGIQLLQLGKKKKQILHGDPLPLTRKSYLVWLGFSAEGTPCYVDSEGIVRMLNRGLGYTWTPICNTREHCKGKSDHYWVVGIHENPQHLRCIPCKGSRFPPTLPRPAIAVLSFKLPYCQTGTEKGQMEEQYWRSVLFHNHLDYLAKSGYEYEESTKNQAIKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVNLAIKYASRSRRLILAQKLSELAVEKAAELAAPQAEEEEEEEEDFRKKLNAGYSNTPTEWSQPRLRNRVEEDTEDTEEVDDIEEKPEIHKHRQNPFFKSADSTDVPAIKSGAVTSSSQGRINPFKVSGSSKEPANSFSSVRSTNILDNMNKSKKSALNRATNNEKSPVIKPLVPKPKSKQASAASFFQKRTSQTDKTEEIKEENTKNSSSETPAVCPQNTENQRLGLPRPKEELQVMELKKRSENVWSMKVMKLKTRKKKRRRI", "length": 1057, "header": "tr|A0A5G2QHD6-1|F1SSP1_PIG Computationally mapped isoform of WD repeat and HMG-box DNA-binding protein 1 OS=Sus scrofa OX=9823 GN=WDHD1 PE=4 SV=1 CANONICAL=F1SSP1-1" }, "locus": { "chromosome": "1", "start_pos": 184378642, "end_pos": 184300981, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089298.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089298.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064203.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064203.1" } ] } }, { "isoform_ac": "F1SSP1-1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1/entry#F1SSP1-1", "sequence": { "sequence": "MPATQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWEDLDDDDPKSINVGEKAYSCALKNGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVIFNEDGTKIAAGSSDFLVKVVDVMDCSQQKTFRGHDAPVLSLSFDPKDIFLASSSCDGSVKVWQISDQTCAISWPLLQKCNDVINAKSICRLAWQPKSGKLLAVPVEKSVKLYRRETWSNQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLSWHPTCGQIAYTDAEGNLGLLENVCDPNGKMSGSKVSSRVERDYNDLFDGDDTGNVGDFPNDNAVETHSFSKETRNDEEDDDDLMLASGRPRQRSHILEDDENSVDVTMLKTGSSRLKEEEEDDQAGNIHSLPLITSQKPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSNTLNYTVADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIVDMPPNEDIEAVCLGQGWAAAATSSLLLRLFTIGGVQKEVFSLPGPVVSMAGHGEQLIIVYHRGTGFDGDQCLGIQLLQLGKKKKQILHGDPLPLTRKSYLVWLGFSAEGTPCYVDSEGIVRMLNRGLGYTWTPICNTREHCKGKSDHYWVVGIHENPQHLRCIPCKGSRFPPTLPRPAIAVLSFKLPYCQTGTEKGQMEEQYWRSVLFHNHLDYLAKSGYEYEESTKNQAIKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVNLAIKYASRSRRLILAQKLSELAVEKAAELAAPQAEEEEEEEEDFRKKLNAGYSNTPTEWSQPRLRNRVEEDTEDTEEVDDIEEKPEIHKHRQNPFFKSADSTDVPAIKSGAVTSSSQGRINPFKVSGSSKEPANSFSSVRSTNILDNMNKSKKSALNRATNNEKSPVIKPLVPKPKSKQASAASFFQKRTSQTDKTEEIKEENTKNSSSETPAVCPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMVRFRVLSAEERKAWAAKAKGGIASDGAEEKKRKRVVDESHETENQEEKTKENLNLPKKQKPLNLSANQKLSAFAFKQE", "length": 1129, "header": "tr|F1SSP1-1|F1SSP1_PIG Isoform 1 of WD repeat and HMG-box DNA-binding protein 1 OS=Sus scrofa OX=9823 GN=WDHD1 PE=4 SV=3 CANONICAL=F1SSP1-1" }, "locus": { "chromosome": "1", "start_pos": 184378642, "end_pos": 184300904, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005569.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005569.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005431.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005431.3" } ] } }, { "isoform_ac": "I3L908-1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1/entry#I3L908-1", "sequence": { "sequence": "MPATQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWEDLDDDDPKSINVGEKAYSCALKNGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVIFNEDGTKIAAGSSDFLVKVVDVMDCSQQKTFRGHDAPVLSLSFDPKDIFLASSSCDGSVKVWQISDQTCAISWPLLQKCNDVINAKSICRLAWQPKSGKLLAVPVEKSVKLYRRETWSNQFDLSDNFISQVSSRVERDYNDLFDGDDTGNVGDFPNDNAVETHSFSKETRNDEEDDDDLMLASGRPRQRSHILEDDENSVDVTMLKTGSSRLKEEEEDDQAGNIHSLPLITSQKPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSNTLNYTVADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIVDMPPNEDIEAVCLGQGWAAAATSSLLLRLFTIGGVQKEVFSLPGPVVSMAGHGEQLIIVYHRGTGFDGDQCLGIQLLQLGKKKKQILHGDPLPLTRKSYLVWLGFSAEGTPCYVDSEGIVRMLNRGLGYTWTPICNTREHCKGKSDHYWVVGIHENPQHLRCIPCKGSRFPPTLPRPAIAVLSFKLPYCQTGTEKGQMEEQYWRSVLFHNHLDYLAKSGYEYEESTKNQAIKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVNLAIKYASRSRRLILAQKLSELAVEKAAELAAPQAEEEEEEEEDFRKKLNAGYSNTPTEWSQPRLRNRVEEDTEDTEEVDDIEEKPEIHKHRQNPFFKSADSTDVPAIKSGAVTSSSQGRINPFKVSGSSKEPANSFSSVRSTNILDNMNKSKKSALNRATNNEKSPVIKPLVPKPKSKQASAASFFQKRTSQTDKTEEIKEENTKNSSSETPAVCPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMVRFRVLSAEERKAWAAKAKGGIASDGAEEKKRKRVVDESHETENQEEKTKENLNLPKKQKPLNLSANQKLSAFAFKQE", "length": 1046, "header": "tr|I3L908-1|F1SSP1_PIG Computationally mapped isoform of WD repeat and HMG-box DNA-binding protein 1 OS=Sus scrofa OX=9823 GN=WDHD1 PE=4 SV=2 CANONICAL=F1SSP1-1" }, "locus": { "chromosome": "1", "start_pos": 184378642, "end_pos": 184300904, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027382.2", "url": "https://www.ensembl.org/id/ENSSSCT00000027382.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020519.2", "url": "https://www.ensembl.org/id/ENSSSCP00000020519.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 427, "start_aa": "Thr", "end_pos": 427, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr427", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHD6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152808", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152808", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PDL4-1", "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "gene_name": "WDHD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSEQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWENLDDDDPKSINVGEKAYSCALKNGKLITAVSNNTVQIHTFPEGAPDGILTRFTMNANHVVFNSDGAKIAAGSSDFMVKVVEVADSSKQKTFRGHDAPVLSLSFDPMDIYLASASCDGSVRVWKVEDQTCVTNWLLLQKCNDVINAKSICRLAWQPGSGKLLAIPVDKVVKLYRRETWDNQVDLSDTSITQPLNVVVWSPCGQYLAAGSVNGSIVVWKVETRECTERMKHEKSYSICGLAWHPRYEQIAYTDTEGNLGLWEDIGDGKKPNDKVASTVTKDYEDLFDGDDDDYLNGDMIEPPSSPNTGANEDHGDDDDLMPTSGHPRRAIIDDDDNSLDIGMIKANSNLLEKEEDDDDQIGGFPALPTSSTQQPFYDGPRPTPRQKPFQSGSTPVHLMHRFMVWNSVGIIRCYNDEQDNAIDIEFHDTSIHHATHLPNSLNHTMADLSTEAILLACESTEELASKLHCIYFSSWDANKEWTVDMPKDEDIEAICLGQGWAACATSALLVRLFTVGGVQKEIFCLPGPVVSMAGHGEQLMVIYHRGTGFDGDQCLGVQLMELGKKKKQILHGDPLSLTKKSYLVWVGFSAEGTPCYVDSEGIVRMLNRGLGNTWIPVCNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGARFPPTLPRPAVAILPFTLPYCQVTTEKGQMEEQYWRSVVFHNYVDYLSKNGYELDENAKSQPVKEQQELLMKLFALSCKLEREFRCVELADLMTQNVVNLAIKYASRSRRLNLAQRLSEMAVEKASELATALEDEEEEEEEDFRTHLNAGYSTSATEWGRLPGRSAQQDQEMEEAEETNGYEEAEGTPEVPKQRPNPFSKAVSSAEVITPKSAVIASSSQGRVNPFKVSSNKKDPLVPSSNVLDTMSKYSKKISSSRAVNKQSSPVIKPLIPKPKSKQASAASFFQVRTPGSSEKRVGEREEKAGHEPPEVQVTAQDNTENKRPKTGFQMWLEENRANILTDNPDLNEAEVIKEGMSRFRILSSEERMVWTEKAKGGAVTDLTEDKKRKRPTAAEDEAKKNEEQKSEDSNVSKKKKPLDQATNVRLSSFAFKQS", "length": 1123 }, "evidence": [ { "id": "F1SSP1", "url": "https://omabrowser.org/oma/group/F1SSP1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZN63-1", "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "gene_name": "Wdhd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPAIQKPMRYGHTEGHTEVCFDDSGSFIVTCGSDGDVRMWEDLDDDDPKSVNVGEKAFSCALKNGKLVTAVSNNTVQVYTFPEGAPDGILTRFTTNANHVVFNGDGTKIAAGSSDFLVKVVDVMDNSQQQTFRGHDAPVLSLSFDPKDVFLASASCDGTVRVWNISDQTCAASWPVLRKSNDVVNSESICRLAWQPKTGKFLAVPVEKSVKLYRRETWSNPFDLSDSSVTQTLNIVTWSPCGQYLAAGAINGLIVVWNVETKECMERVKHEKGYAICGLAWHPTYSRICYTDVEGNLGILENVCDLSGKLSSNKVPSGVEKDYSDLFDGDDTSSAGDFLNDNAVEIPSFSKGIRNEEDDNDDLMLAADHVLGDDENSVDVTMLRNDLHREEGEDRQASSLHSLPLVKSQRPLYDGPMPTPRQKPFQPSSTPLHLTHRFMAWNSVGIIRCYNDDQDSAIDVEFHDTSIHHATHLSNAFNYTMGSLSHEAVLLACESADELASKLHCLHFSSWDSSKEWIVDMPENEDIEAICLGLGWAAAATSALLLRLFTIGGVQKEVFCLPGPVVSMAGHGEQLCIVYHRGTGFDGDQCLGVQLLELGRKKKQVLHGDPLPLTRKSYLTWLGFSAEGTPCYVDSEGCVRMLNRGLGNTWTPVCNIREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILPFKLPYCQTSTEKGQMEEQFWHSVLFHNYLDYLAENGYDYEESIKKQAVKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVHLAIKYASRSRKLILAQKLSELAAEKAAELAEIQTEEREEDFRERLNAGYSHTTTEWSQPRVRSQVEEDAEDREDTVSEGNPEPQNHVIGQNLIQSANSSDTPAMKSGAVFSSSQGRVNPFKVLVSSKEPAVSVNATRSANILDNMNKLSRKSTSFNRVANNEKSPVIKPLIPKPRCKQASAASYFQKRTSQAEKTEEVKENPKSSSSEAPAVCLQNSEVQRPKTGFQMWLEENRSHIMSDNPDISDEADIIKEGMIRFRVLSAEERKEWTNKAKGGTASDGAEAKKRKRGVSEICETEKQEEAVKENLELSKKQKALDLSTNQKLSAFAFKQE", "length": 1119 }, "evidence": [ { "id": "F1SSP1", "url": "https://omabrowser.org/oma/group/F1SSP1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B7F5-1", "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "gene_name": "WDHD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPATQKPMRYGHTEGHTDVCFDDSGSCIVTCGSDGDVRIWEDLDDDDPKSINVGEKAYSCALKNGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVVFNGDGTKIAAGSSDFLVKIVDVMDCSQQKTFRGHDAPVLSLSFDPKDIFLASSSCDGSVKVWQISDQTCPISWPLLQKCNDVVNAKSICRLAWQPKSGKLLAVPVEKSVKLYKRETWSNQFDLSDDVISQTLNIVTWSPCGQYLAAGSINGLIIIWNVETKNCIERVKHEKGYAICGLSWHPTCGQIAYTDAEGNLGLLENVCDPSGKMSNRKVSSRVEKDYNDLFDGDDTSNVGDCLNDSAVKTHSFSKGIVNDEEDDDDLMLASGRPRQRSHILEDDENSVDVTMLKIGSSLFKEEEDDQGGSIHNLPVVTSQRPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLLNTFNYTVADLSHEAVLLACESTDELASKLHCLHLSSWDSSKEWIVDMPPNEDIEAICLGQGWAAAATSSLLLRLFTIGGVQKEVFSLPGPIVSMAGHGEQLVIVYHRGTGFDGDQCLGVQLLELGKKKKQILHGDPLPLTRKSYLVWVGFSAEGTPCYVDSEGIVRMLNRGLGHTWTPVCNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAVLSFKLPYCQTATEKGQMEEQYWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLLKMLALSCKLEREFRCVELAGLMTQNAVNLAIKYASRSRRLILAQRLGELAVEKAAELAATQAEEEEEEDFRKKLNVGYSNTSTEWSQPRLRNQVEEDTEDNGEADNTEENTEIHKHGQNPFFKSADSSDMPALKSGAVTSSSQGRINPFKVSGNSKEPAISVSSGRSTNILDTMNKSSKKSTALNRATDNEKSPVIKPLIPKPKPKQASAASFFQKRTSQADRTEEVKEENPKNSSSETPAVCPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMVRFKVLSSEERKAWAARAKGGTASDGAEEKKRKRVVDESQETENQEEKMKNLNLPKKQKPLDLSTNQKLSAFAFKQE", "length": 1127 }, "evidence": [ { "id": "F1SSP1", "url": "https://omabrowser.org/oma/group/F1SSP1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F4JF14-1", "protein_name": "Protein ENHANCER OF LHP1 1", "gene_name": "EOL1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKSRSLKLREAHKVGGSAAFCSILWDHKAEHFVTSSSSDPSISVHDGLSTSTLPPTILRHHQDGVTSLALSNDSTLLASGSIDHCVKLYKFPSGEFQTNITRFTLPIRVLAFNGSGSLLAAAGDDEGIKLINTFDGSIVRVLKGHKGPVTGLDFHPNGELLASIDTTGTVLCWELQNGVVSFTLKGVAPDTGFNTSIVNIPRWSPDGRTLAVPGLRNDVVMYDRFTGEKLFALRGDHLEAICYLTWAPNGKYIATSGLDKQVLLWDVDKKQDIDRHKFEERICCMSWKPNGNALSVIDAKGRYGVWESLVPSSMLSPTVGVPDIVPKKRNEILDFDDEVEEEIYRASESLDDAMGDSDDGESHHTSRKRLRKKTLIDEDVDDAYEELNDGSSLPSASEYRKKSHRGHREKQGARSGAFKGISASTKYKMQSSFQPGATPPEPGKRTFLCYNMLGCITTIEHEGNSRIETDFHDTGRGPRVSSMIDIYGFTMASINETGCVFANPCKGEKNMSVLMYRPFRSWASNSEWTMRFEGEEVKVVANGSGWVAAVTSLNLLRVFSEGGLQKHILSLDGPVVTAVGCKDHLAVVTHVSDCLPSNEQVMEFRVFNISKMTQELKGRVALTPGSRLTWIGFSEEGSLSSYDSEGVLRVFTSQYGGSWIPVFSTSKEKKQEENYWVVGLNTSSLYCIACKYAEMFPQVTPKPILTILDLSLPLASSDLGAASLENELILKQLRLYETQRKVDDMALVGVDTTALEDEAFDLEVSQDKCILRLISSCCSSDSFARASELMELLTLEKSMRAAITLVTKLKLPFLAEKFSSILEERLLEEASEAAVTNPALNPNGEVVTRVESKVQNPPASIQTSENTEAVMKSSATKLSAPTLLKKSKVSEGLKLGKEQTKKDKSDDAKIKEIKKLNLKNPVNNVNKEDKGQEKEVNQGEARRSSNPFLKSTV", "length": 953 }, "evidence": [ { "id": "F1SSP1", "url": "https://omabrowser.org/oma/group/F1SSP1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O75717-1", "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "gene_name": "WDHD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPATRKPMRYGHTEGHTEVCFDDSGSFIVTCGSDGDVRIWEDLDDDDPKFINVGEKAYSCALKSGKLVTAVSNNTIQVHTFPEGVPDGILTRFTTNANHVVFNGDGTKIAAGSSDFLVKIVDVMDSSQQKTFRGHDAPVLSLSFDPKDIFLASASCDGSVRVWQISDQTCAISWPLLQKCNDVINAKSICRLAWQPKSGKLLAIPVEKSVKLYRRESWSHQFDLSDNFISQTLNIVTWSPCGQYLAAGSINGLIIVWNVETKDCMERVKHEKGYAICGLAWHPTCGRISYTDAEGNLGLLENVCDPSGKTSSSKVSSRVEKDYNDLFDGDDMSNAGDFLNDNAVEIPSFSKGIINDDEDDEDLMMASGRPRQRSHILEDDENSVDISMLKTGSSLLKEEEEDGQEGSIHNLPLVTSQRPFYDGPMPTPRQKPFQSGSTPLHLTHRFMVWNSIGIIRCYNDEQDNAIDVEFHDTSIHHATHLSNTLNYTIADLSHEAILLACESTDELASKLHCLHFSSWDSSKEWIIDLPQNEDIEAICLGQGWAAAATSALLLRLFTIGGVQKEVFSLAGPVVSMAGHGEQLFIVYHRGTGFDGDQCLGVQLLELGKKKKQILHGDPLPLTRKSYLAWIGFSAEGTPCYVDSEGIVRMLNRGLGNTWTPICNTREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQIATEKGQMEEQFWRSVIFHNHLDYLAKNGYEYEESTKNQATKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVNLAIKYASRSRKLILAQKLSELAVEKAAELTATQVEEEEEEEDFRKKLNAGYSNTATEWSQPRFRNQVEEDAEDSGEADDEEKPEIHKPGQNSFSKSTNSSDVSAKSGAVTFSSQGRVNPFKVSASSKEPAMSMNSARSTNILDNMGKSSKKSTALSRTTNNEKSPIIKPLIPKPKPKQASAASYFQKRNSQTNKTEEVKEENLKNVLSETPAICPPQNTENQRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTEAKKRKRVVDESDETENQEEKAKENLNLSKKQKPLDFSTNQKLSAFAFKQE", "length": 1129 }, "evidence": [ { "id": "F1SSP1", "url": "https://omabrowser.org/oma/group/F1SSP1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P59328-1", "protein_name": "WD repeat and HMG-box DNA-binding protein 1", "gene_name": "Wdhd1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPATQKPMRYGHTEGHTEVCFDDSGSYIVTCGSDGDVRMWEDLDDDDPKSVNVGEKAFSCALKNGKLVTAVSNNTVQVYTFPEGVPDGILTRFTTNANHVVFNGAGNKIAAGSSDFLVKVVDVMDNSQQQTFRGHDAPVLSLSFDPKDIFLASASCDGTVRVWNISDQTCAVSWPVLQKSNDVVNAKSICRLAWQPKAGKLLAVPVEKSVKLYRRETWSNPFDLSDSSISQTLNIVTWSPCGQYLAAGAINGLIVVWNVETKDCMERVKHEKGYAICGLAWHPTCSRICYTDVEGNLGVLENVCDLSGKVSSNKVSSRVEKDYNDLFDGDDTSSAGDFLNDNAVEIPSFSKGIINEDDDNDDIMLAADHDLGDDENSVDVTMLKADLSHKEEGDDDQARSIHNLPLIRPQRPFYDGPMPTPRQKPFQSSSTPLHLSHRFMVWNSVGIIRCYNDDQDSAIDVEFHDTSIHHATHLLNAFNYTMGTLSHEAILLACESADELASKLHCLHFSSWDSSKEWMVDMPQNEDIEAICLGLGWAAAATTALLLRLFTIGGVQKEVFCLPGPVVSMAGHGEQLCIVYHRGTGFDGDQCLGVQLLELGRKKNQVLHGDPLPLTRKSYLTWLGFSAEGTPCYVDSEGCVRMLNRGLGNTWTPVCNIREHCKGKSDHYWVVGIHENPQQLRCIPCKGSRFPPTLPRPAVAILSFKLPYCQTSTEKGQMEEQFWHSVLFHNYLDYLAKNGYDYEESIKNQAVKEQQELLMKMLALSCKLEREFRCVELADLMTQNAVHLAIKYASRSRKLILAQKLSELAAEKAAELAETQSEEEKEEDFREKLNAGYSHTTTEWSRPRVRSQVEDAEDREDTVSEEKPESHNHGQNLFQSANSSDTPALKSGAVFSSSQGWVNPFKVVVSSKEPAVSANSTRSANILDSMNKSSRKSTSLNRMENNEKSPVIKPLTPKPRSKQASAASYFQKRTPQADKTEEVKENPKSSSSDAPAVCLQNSENQRPKTGFQMWLEENRSQILSDNPDISDETDIIKEGMIRFRVLSAEERKAWTNKAKGETASDGAEAKKRKRVVSEICETENQEETVKENLDLSKKQKALNLPANQKLSAFAFKQ", "length": 1117 }, "evidence": [ { "id": "F1SSP1", "url": "https://omabrowser.org/oma/group/F1SSP1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q01454-1", "protein_name": "DNA polymerase alpha-binding protein", "gene_name": "CTF4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVSVIDKLVFDFGGKTLVSLAPDNNTLCVANKNGLTKILKTNNPEEEPETLDSSKLVSSIKCYSNSHFLMTTMQGDALRYNIDSSQEELLARFALPLRDCCVIHSGKMAVFGGDDLELILLELDDETHKKHAIKIDEQVSQISYNSQMNILAVSMINGKVQIFSLTSTIPNKVHELNDYIVANSYDDTHRDKILSNMMDDIDKDNDNDLSETADPDENNVADPEFCAANRICTRVAWHPKGLHFALPCADDTVKIFSIKGYSLQKTLSTNLSSTKAHFIDLQFDPLRGTYIAAVDLNNKLTVWNWETSEIHYTREFKRKITNIAWKIQADSKTLDLVLGTWSGSIAIVQNLAESVVSNIPDQSVAESSTKHGLFVDSESDLENLEGNDDINKSDKLFSDITQEANAEDVFTQTHDGPSGLSEKRKYNFEDEEDFIDDDDGAGYISGKKPHNEHSYSRVHKTHSFPISLANTGKFRYMPFSPAGTPFGFTDRRYLTMNEVGYVSTVKNSEQYSITVSFFDVGRFREYHFEDLFGYDLCFLNEKGTLFGQSKTGQIQYRPHDSIHSNWTKIIPLQAGERITSVAATPVRVIVGTSLGYFRSFNQFGVPFAVEKTSPIVALTAQNYRVFSVHYSQFHGLSYSLSELGTSSKRYYKRECPLPMSLPNINSDMKKDANLDYYNFNPMGIKSLFFSSYGDPCIFGSDNTLLLLSKWRSPEESKWLPILDSNMEIWKMSGGKETTDIHVWPLALAYDTLNCILVKGKHIWPEFPLPLPSEMEIRMPVFVKSKLLEENKAILNKKNEIGADTEAEEGEEDKEIQIPVSMAAEEEYLRSKVLSELLTDTLENDGEMYGNENEVLAALNGAYDKALLRLFASACSDQNVEKALSLAHELKQDRALTAAVKISERAELPSLVKKINNIREARYEQQLK", "length": 927 }, "evidence": [ { "id": "F1SSP1", "url": "https://omabrowser.org/oma/group/F1SSP1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ], "pmid": "" }, { "name": "nuclear replication fork", "id": "GO:0043596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043596", "evidence": [ { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "mitotic cell cycle", "id": "GO:0000278", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000278", "evidence": [ { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ], "pmid": "" }, { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ], "pmid": "" }, { "name": "DNA-templated DNA replication", "id": "GO:0006261", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006261", "evidence": [ { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SSP1", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1000, "end_pos": 1002, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1029, "end_pos": 1031, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1114, "end_pos": 1116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" }, { "start_pos": 943, "end_pos": 945, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSP1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1129, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSP1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSP1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSP1" }, { "id": "PS50118", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMG box", "eco_id": "ECO_0000259", "start_pos": 1015, "end_pos": 1070, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 427 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1000, "end_pos": 1002 }, { "start_pos": 1029, "end_pos": 1031 }, { "start_pos": 1114, "end_pos": 1116 }, { "start_pos": 486, "end_pos": 488 }, { "start_pos": 73, "end_pos": 75 }, { "start_pos": 943, "end_pos": 945 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PWF7-1", "uniprot_ac": "F6PWF7", "uniprot_id": "F6PWF7_PIG", "mass": { "chemical_mass": 45801.0, "monoisotopic_mass": 45801.0 }, "refseq": { "ac": "XP_003358093", "name": "keratin, type I cuticular Ha3-I", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358093" }, "gene_names": [ { "name": "KRT33A", "type": "recommended", "evidence": [ { "id": "F6PWF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ] }, { "name": "KRT33A", "type": "synonym", "evidence": [ { "id": "XP_003358093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358093" } ] } ], "protein_names": [ { "name": "Keratin 33A", "type": "synonym", "evidence": [ { "id": "F6PWF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PWF7/entry#names_and_taxonomy" } ] }, { "name": "keratin, type I cuticular Ha3-I", "type": "synonym", "evidence": [ { "id": "XP_003358093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358093" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRT33A", "url": "https://www.uniprot.org/uniprotkb/F6PWF7", "locus": {} } ], "crossref": [ { "id": "F6PWF7", "url": "https://alphafold.ebi.ac.uk/entry/F6PWF7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030350", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030350", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623387", "url": "https://www.ncbi.nlm.nih.gov/gene/100623387", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002957", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002957", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623387", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623387", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XYETELS", "url": "https://omabrowser.org/oma/group/XYETELS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F6PWF7", "url": "https://www.orthodb.org/?gene=F6PWF7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23239:SF97", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23239:SF97", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003358093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003358093", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QHN3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QHN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PWF7-1", "url": "https://www.uniprot.org/uniprotkb/F6PWF7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPYNCLPNLSCRSSSSSRPCVPSSCQGITLPGACNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQQKILCSKSENARLVVQIDNAKLASDDFRTKYETELGLRQLVESDLNGLRRILDELTLCKADLEAQVESLKEELLCLKQNHEQEVNSLRSQLGDRLNIEVDAAPTVDLNSVLSETRSQYEALVETNRRDVEEWFTRQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPCNPCATTNAYEKTVGPCVSNPCVSRTWCGPCNTLVR", "length": 403, "header": "tr|F6PWF7-1|F6PWF7_PIG Isoform 1 of Keratin 33A OS=Sus scrofa OX=9823 GN=KRT33A PE=1 SV=2 CANONICAL=F6PWF7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QHN3-1", "url": "https://www.uniprot.org/uniprotkb/F6PWF7/entry#A0A5G2QHN3-1", "sequence": { "sequence": "MPYNCLPNLSCRSSSSSRPCVPSSCQGITLPGACNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQQKVKSGSGLPLMLPYHRYETELGLRQLVESDLNGLRRILDELTLCKADLEAQVESLKEELLCLKQNHEQEVNSLRSQLGDRLNIEVDAAPTVDLNSVLSETRSQYEALVETNRRDVEEWFTRQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPCNPCATTNAYEKTVGPCVSNPCVSRTWCGPCNTLVR", "length": 390, "header": "tr|A0A5G2QHN3-1|F6PWF7_PIG Computationally mapped isoform of Keratin 33A OS=Sus scrofa OX=9823 GN=KRT33A PE=1 SV=1 CANONICAL=F6PWF7-1" }, "locus": { "chromosome": "12", "start_pos": 21255133, "end_pos": 21250507, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090355.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090355.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063381.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063381.1" } ] } }, { "isoform_ac": "F6PWF7-1", "url": "https://www.uniprot.org/uniprotkb/F6PWF7/entry#F6PWF7-1", "sequence": { "sequence": "MPYNCLPNLSCRSSSSSRPCVPSSCQGITLPGACNIPATVSSGNWFCEGAFNGNEKETMQFLNDRLASYLEKVRQLERDNAELERQIQERSQQQEPLVCPNYQSYFRTIEELQQKILCSKSENARLVVQIDNAKLASDDFRTKYETELGLRQLVESDLNGLRRILDELTLCKADLEAQVESLKEELLCLKQNHEQEVNSLRSQLGDRLNIEVDAAPTVDLNSVLSETRSQYEALVETNRRDVEEWFTRQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEVELQAQHNLRDSLENTLTETEARYSSQLAQVQGLIGNVEAQLAEIRADLERQNQEYQVLLDVRARLECEINTYRGLLESEDCKLPCNPCATTNAYEKTVGPCVSNPCVSRTWCGPCNTLVR", "length": 403, "header": "tr|F6PWF7-1|F6PWF7_PIG Isoform 1 of Keratin 33A OS=Sus scrofa OX=9823 GN=KRT33A PE=1 SV=2 CANONICAL=F6PWF7-1" }, "locus": { "chromosome": "12", "start_pos": 21255133, "end_pos": 21250507, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018988.3", "url": "https://www.ensembl.org/id/ENSSSCT00000018988.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018483.3", "url": "https://www.ensembl.org/id/ENSSSCP00000018483.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QHN3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QHN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623387", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623387", "resource": "KEGG Pathway" }, { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2QJ13-1", "protein_name": "Keratin, type I cuticular Ha3-II", "gene_name": "LOC100757537", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPYNCCLPTMSCRTSCSSRPCVPNSCHGCTLPGACNIPANVGNCNWFCEGSFNGNEKETMQFLNDRLASYLEKVRQLERENAELEARIQERNQQQDPLVCPAYQSYFATIEQLQQKILCGKSENGRLVVQIDNAKLAADDFRTKYQTELSLRQLVESDINGLRRILDELTLCKSDLEAQVESLKQELLCLKQNHEEEVNTLRCQLGDRLNVEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWFATQTEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHNLRNSLENTLTESEARYSSQLSQVQCMITNVESQLGEIRADLERQNQEYQVLLDIRARLECEINTYRGLLESEDCKLPCNPCATTNACDKPIGPCVANPCVTRSRCGPCNTFGC", "length": 404 }, "evidence": [ { "id": "F6PWF7", "url": "https://omabrowser.org/oma/group/F6PWF7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O76009-1", "protein_name": "Keratin, type I cuticular Ha3-I", "gene_name": "KRT33A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSYSCGLPSLSCRTSCSSRPCVPPSCHGCTLPGACNIPANVSNCNWFCEGSFNGSEKETMQFLNDRLASYLEKVRQLERDNAELENLIRERSQQQEPLVCASYQSYFKTIEELQQKILCSKSENARLVVQIDNAKLASDDFRTKYETELSLRQLVESDINGLRRILDELTLCRSDLEAQVESLKEELLCLKQNHEQEVNTLRCQLGDRLNVEVDAAPTVDLNQVLNETRSQYEALVETNRREVEQWFATQTEELNKQVVSSSEQLQSYQAEIIELRRTVNALEIELQAQHNLRDSLENTLTESEARYSSQLSQVQRLITNVESQLAEIRSDLERQNQEYQVLLDVRARLECEINTYRSLLESEDCKLPSNPCATTNACDKSTGPCISNPCGLRARCGPCNTFGY", "length": 404 }, "evidence": [ { "id": "F6PWF7", "url": "https://omabrowser.org/oma/group/F6PWF7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K0Y2-1", "protein_name": "Keratin, type I cuticular Ha3-I", "gene_name": "Krt33a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPYNCCLPAMSCRTSCSSRPCVPPSCHGCTLPGACNIPANVGNCNWFCEGSFNGNEKETMQFLNDRLASYMEKVRQLERENAELECRIQERNQQQDPLVCPAYQAYFRTIEELQQKILCGKSENARLVVQIDNAKLASDDFRTKYETELSLRQLVEADINSLRRILDELTLCKSDLEAQVESLKEELLCLKQNHEQEVNTLRCQLGDRLNVEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWYTTQTEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHELRNSLENTLTESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDIRSRLECEINTYRGLLESEDCKLPCNPCATTNACDKPIGPCVPNPCVTRPRCGPCNTFVR", "length": 404 }, "evidence": [ { "id": "F6PWF7", "url": "https://omabrowser.org/oma/group/F6PWF7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "pmid": "" }, { "name": "intermediate filament", "id": "GO:0005882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005882", "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "pmid": "" }, { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "pmid": "" }, { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "pmid": "" }, { "name": "morphogenesis of an epithelium", "id": "GO:0002009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002009", "evidence": [ { "database": "UniProtKB", "id": "F6PWF7", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6PWF7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 403, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6PWF7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6PWF7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F6PWF7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PWF7" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 55, "end_pos": 366, "start_aa": "Glu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5P4-1", "uniprot_ac": "I3L5P4", "uniprot_id": "I3L5P4_PIG", "mass": { "chemical_mass": 53507.0, "monoisotopic_mass": 53507.0 }, "refseq": {}, "gene_names": [ { "name": "THNSL2", "type": "recommended", "evidence": [ { "id": "I3L5P4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5P4" } ] } ], "protein_names": [ { "name": "Threonine synthase-like 2", "type": "recommended", "evidence": [ { "id": "I3L5P4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5P4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5P4", "url": "https://www.uniprot.org/uniprotkb/I3L5P4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "THNSL2", "url": "https://www.uniprot.org/uniprotkb/I3L5P4", "locus": { "chromosome": "3", "start_pos": 57799026, "end_pos": 57823440, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025106", "url": "https://www.ensembl.org/id/ENSSSCG00000025106" } ] } } ], "crossref": [ { "id": "I3L5P4", "url": "https://alphafold.ebi.ac.uk/entry/I3L5P4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025106", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025106", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01560", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01560", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029144", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029144", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036052", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036052", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051166", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051166", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR42690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR42690:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR42690:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00291", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00291", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14821", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14821", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24857", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24857", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QIU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QIU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5P4", "url": "https://www.uniprot.org/uniprotkb/I3L5P4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5P4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5P4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWYVSTRGMAPRVDFEGALFSGYAPDGGLYMPEELPQLGGETLRQWSGLSYAGLVKALCSLFIGPELIPKDDLNDLIDRAFSRFRHKEVVHLCRLRNGLNVLELWHGVTYAFKDLSLCCTAQFLQYFLEKRKKHITVVVGTSGDTGSAAIESVQGAKNVDIIVLLPKGRCTKIQELQMTTVLRENVHVFGVEGNSDELDEPIKAVFADVAFVKKHNLMSLNSINWSRVLVQMAHHFFAYFQCTPSLDTHPLPPWRWLSGCIAQKMGLPIRLVVAVNCNDIIHRTVQRGDFSLSETVKATLASAMDIQVPYNMERIFWLLSGSDSQMTRALMEQFERTQRVNVPKELHSKLSEAVTSESMMDEVITQTMLRCWEENQYLLCPHSAVAVSYHFQQTDRQQPSPPRCCLAPASAAKFPEAVLAAGLTPDTPADILALERKEARCTPMRKGDDWTQMLRDTIENLSRQWQGHFQNTPE", "length": 474, "header": "tr|I3L5P4-1|I3L5P4_PIG Isoform 1 of Threonine synthase-like 2 OS=Sus scrofa OX=9823 GN=THNSL2 PE=1 SV=3 CANONICAL=I3L5P4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QIU6-1", "url": "https://www.uniprot.org/uniprotkb/I3L5P4/entry#A0A5G2QIU6-1", "sequence": { "sequence": "MWYVSTRGMAPRVDFEGALFSGYAPDGGLYMPEELPQLGGETLRQWSGLSYAGLVKALCSLFIGPELIPKDDLNDLIDRAFSRFRHKEVVHLCRLRNGLNVLELWHGVTYAFKDLSLCCTAQFLQYFLEKRKKHITVVVGTSGDTGSAAIESVQGAKNVDIIVLLPKGRCTKIQELQMTTVLRENVHVFGVEGNSDELDEPIKAVFADVAFVKKHNLMSLNSINWSRVLVQMAHHFFAYFQCTPSLDTHPLPVEVVVPTGAGNLAAGCIAQKMGLPIRLVVAVNCNDIIHRTVQRGDFSLSETVKATLASAMDIQVPYNMERIFWLLSGSDSQMTRALMEQFERTQRVNVPKELHSKPSSVLSGSCLCGQVPGGRAGCGADPG", "length": 383, "header": "tr|A0A5G2QIU6-1|I3L5P4_PIG Computationally mapped isoform of Threonine synthase-like 2 OS=Sus scrofa OX=9823 GN=THNSL2 PE=1 SV=2 CANONICAL=I3L5P4-1" }, "locus": { "chromosome": "3", "start_pos": 57818853, "end_pos": 57801673, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090990.2", "url": "https://www.ensembl.org/id/ENSSSCT00000090990.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063836.2", "url": "https://www.ensembl.org/id/ENSSSCP00000063836.2" } ] } }, { "isoform_ac": "I3L5P4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5P4/entry#I3L5P4-1", "sequence": { "sequence": "MWYVSTRGMAPRVDFEGALFSGYAPDGGLYMPEELPQLGGETLRQWSGLSYAGLVKALCSLFIGPELIPKDDLNDLIDRAFSRFRHKEVVHLCRLRNGLNVLELWHGVTYAFKDLSLCCTAQFLQYFLEKRKKHITVVVGTSGDTGSAAIESVQGAKNVDIIVLLPKGRCTKIQELQMTTVLRENVHVFGVEGNSDELDEPIKAVFADVAFVKKHNLMSLNSINWSRVLVQMAHHFFAYFQCTPSLDTHPLPPWRWLSGCIAQKMGLPIRLVVAVNCNDIIHRTVQRGDFSLSETVKATLASAMDIQVPYNMERIFWLLSGSDSQMTRALMEQFERTQRVNVPKELHSKLSEAVTSESMMDEVITQTMLRCWEENQYLLCPHSAVAVSYHFQQTDRQQPSPPRCCLAPASAAKFPEAVLAAGLTPDTPADILALERKEARCTPMRKGDDWTQMLRDTIENLSRQWQGHFQNTPE", "length": 474, "header": "tr|I3L5P4-1|I3L5P4_PIG Isoform 1 of Threonine synthase-like 2 OS=Sus scrofa OX=9823 GN=THNSL2 PE=1 SV=3 CANONICAL=I3L5P4-1" }, "locus": { "chromosome": "3", "start_pos": 57818853, "end_pos": 57801528, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025817.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025817.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019343.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019343.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QIU6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QIU6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "lyase activity", "id": "GO:0016829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016829", "evidence": [ { "database": "UniProtKB", "id": "I3L5P4", "url": "https://www.uniprot.org/uniprotkb/I3L5P4" } ], "pmid": "" }, { "name": "pyridoxal phosphate binding", "id": "GO:0030170", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030170", "evidence": [ { "database": "UniProtKB", "id": "I3L5P4", "url": "https://www.uniprot.org/uniprotkb/I3L5P4" } ], "pmid": "" }, { "name": "phosphatase activity", "id": "GO:0016791", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016791", "evidence": [ { "database": "UniProtKB", "id": "I3L5P4", "url": "https://www.uniprot.org/uniprotkb/I3L5P4" } ], "pmid": "" }, { "name": "serine binding", "id": "GO:0070905", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070905", "evidence": [ { "database": "UniProtKB", "id": "I3L5P4", "url": "https://www.uniprot.org/uniprotkb/I3L5P4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5P4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 474, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5P4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5P4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5P4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5P4" }, { "id": "PF14821", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14821" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Threonine synthase N-terminal", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 81, "start_aa": "Tyr", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 224, "end_pos": 226 }, { "start_pos": 460, "end_pos": 462 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR88-1", "uniprot_ac": "F1SR88", "uniprot_id": "F1SR88_PIG", "mass": { "chemical_mass": 57695.0, "monoisotopic_mass": 57695.0 }, "refseq": { "ac": "XP_001925601", "name": "protein FAM134A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925601" }, "gene_names": [ { "name": "RETREG2", "type": "recommended", "evidence": [ { "id": "F1SR88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR88" } ] }, { "name": "RETREG2", "type": "synonym", "evidence": [ { "id": "XP_001925601", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925601" } ] } ], "protein_names": [ { "name": "Reticulophagy regulator family member 2", "type": "synonym", "evidence": [ { "id": "F1SR88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR88/entry#names_and_taxonomy" } ] }, { "name": "protein FAM134A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001925601", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925601" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR88", "url": "https://www.uniprot.org/uniprotkb/F1SR88" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RETREG2", "url": "https://www.uniprot.org/uniprotkb/F1SR88", "locus": { "chromosome": "15", "start_pos": 121218812, "end_pos": 121212881, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016207", "url": "https://www.ensembl.org/id/ENSSSCG00000016207" } ] } } ], "crossref": [ { "id": "F1SR88", "url": "https://alphafold.ebi.ac.uk/entry/F1SR88", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016207", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016207", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22561", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22561", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156393", "url": "https://www.ncbi.nlm.nih.gov/gene/100156393", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055257", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055257", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156393", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156393", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EKWKPRF", "url": "https://omabrowser.org/oma/group/EKWKPRF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SR88", "url": "https://www.orthodb.org/?gene=F1SR88", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20952", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20952", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20952:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20952:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001925601", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925601", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QJV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QJV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR88", "url": "https://www.uniprot.org/uniprotkb/F1SR88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR88-1", "url": "https://www.uniprot.org/uniprotkb/F1SR88-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGGGGGNTGAGGSPGLGLSLGLGLSLGMGEATGEAEEEAATAEAVGRLATTLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPIFLLSISLLAYFLLDLWQPRFLPAIQASSPEEPHSDSEGAGSGARPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKSAPPGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALSRELGEGEETDLAPPEDLLGPPQALSRQNLDLEEEQVASKETLLRLSSPLHFVNTHFNGAGSPTDGVMLSPEGPVATLSPEAMSGDLTTPPSALSPLLCLAESDPVPSPPVLPPLPQDSPQPLPAPEEEEALTTEDFELLDQGELEQLNAELGLGPETSAEPPDAPPPPPLGPDTLSLVQSDQEAQAVAEP", "length": 542, "header": "tr|F1SR88-1|F1SR88_PIG Isoform 1 of Reticulophagy regulator family member 2 OS=Sus scrofa OX=9823 GN=RETREG2 PE=1 SV=2 CANONICAL=F1SR88-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QJV9-1", "url": "https://www.uniprot.org/uniprotkb/F1SR88/entry#A0A5G2QJV9-1", "sequence": { "sequence": "MASGGGGGNTGAGGSPGLGLSLGLGLSLGMGEATGEAEEEAATAEAVGRLATTLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPIFLLSISLLAYFLLDLWQPRFLPAIQASSPEEPHSDSEGAGSGARPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQVIFAILFCLGIMLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKSAPPGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALSRELGEGEETDLAPPEDLLGPPQALSRQNLDLEEEQVASKETLLRLSSPLHFVNTHFNGAGSPTDGVMLSPEGPVATLSPEAMSGDLTTPPSALSPLLCLAESDPVPSPPVLPPLPQDSPQPLPAPEEEEALTTEDFELLDQGELEQLNAELGLGPETSAEPPDAPPPPPLGPDTLSLVQSDQEAQAVAEP", "length": 525, "header": "tr|A0A5G2QJV9-1|F1SR88_PIG Computationally mapped isoform of Reticulophagy regulator family member 2 OS=Sus scrofa OX=9823 GN=RETREG2 PE=1 SV=1 CANONICAL=F1SR88-1" }, "locus": { "chromosome": "15", "start_pos": 121217735, "end_pos": 121213034, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074199.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074199.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064778.1", "url": "https://www.ensembl.org/id/ENSSSCP00000064778.1" } ] } }, { "isoform_ac": "F1SR88-1", "url": "https://www.uniprot.org/uniprotkb/F1SR88/entry#F1SR88-1", "sequence": { "sequence": "MASGGGGGNTGAGGSPGLGLSLGLGLSLGMGEATGEAEEEAATAEAVGRLATTLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPIFLLSISLLAYFLLDLWQPRFLPAIQASSPEEPHSDSEGAGSGARPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKSAPPGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALSRELGEGEETDLAPPEDLLGPPQALSRQNLDLEEEQVASKETLLRLSSPLHFVNTHFNGAGSPTDGVMLSPEGPVATLSPEAMSGDLTTPPSALSPLLCLAESDPVPSPPVLPPLPQDSPQPLPAPEEEEALTTEDFELLDQGELEQLNAELGLGPETSAEPPDAPPPPPLGPDTLSLVQSDQEAQAVAEP", "length": 542, "header": "tr|F1SR88-1|F1SR88_PIG Isoform 1 of Reticulophagy regulator family member 2 OS=Sus scrofa OX=9823 GN=RETREG2 PE=1 SV=2 CANONICAL=F1SR88-1" }, "locus": { "chromosome": "15", "start_pos": 121217735, "end_pos": 121213034, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017648.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017648.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017170.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017170.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QJV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QJV9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156393", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156393", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZJY0-1", "protein_name": "RETREG1-3/ARL6IP-like N-terminal reticulon-homology domain-containing protein", "gene_name": "FAM134A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATTARAEEAAAAAAEEEEEEAAAAAAERLASALRQRLRGWEAALAAAQRLLVWERPLHSLVTAAALGGALWLFSSTSLRPLFLLSMSLLGILLLERWKPRFLFDFPAQPSEETGGDSEGVTSGAQPHLLSVPELCHCLAESWVTFRLYLQELLQYKRQNPAKFCMSVCSGCLILAVVGHYVPGIMISYIILLSILLWPLVVYHELIQKMYTRLEPVLMKLDYSMKAETLHHKHEKKKRQVKSEPAAGDEPTAETESESEAELSGFSPVVDVKKTALALSITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLHSEPEESFSKDLAEFPSVEEYHSRDVGPQSDEDAFGVPLGPELAHAARELDSAEKEAADSDLSILRLASPLHFVNTHFNGSGQVAGGSAEPETVPAPGLGICIDTLSEEIVTTAITTAVQNTLSALLRSSEASEGPSLSEFLPAEPEDKLSFQAQLSGTEAVEAEAAASPEDEEEGDDFELLDQRELEQMDVELGLGEEREGQDPPAAPAPASPSPALAELPKQGDEEEAAMTAASTS", "length": 559 }, "evidence": [ { "id": "F1SR88", "url": "https://omabrowser.org/oma/group/F1SR88/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1MUR7-1", "protein_name": "Reticulophagy regulator family member 2", "gene_name": "RETREG2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASGGVGGNTGTGGGPGLGLTLGLGLGMGEATGEAEEEAATAEAVGRLATTLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPFFLLSISLLAYFLLDLWQPRFLPDISASSPEEPHSDSEGAGSGARPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKNAPPGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALSRELGEGEETDLAPPEDLLGPPQALSRQDLDLEEEEDAASKEALLQLSSPLHFVNTHFNGAGSPTDGVMLSPGGPVETLSPEAVSGDLTTPPSTLLPLLGLAESDPVPSPSVLPSLPQDSPQPLPAPEEEEALTTEDFELLDQGELEQLNAELGLGPETCPEPPDAPPPPPLGPDTPSLVQSDQEAQAMAEP", "length": 541 }, "evidence": [ { "id": "F1SR88", "url": "https://omabrowser.org/oma/group/F1SR88/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3MHU5-1", "protein_name": "Reticulophagy regulator 2", "gene_name": "Retreg2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASSGGGNTGAGGTSGLGLGLGLGLCMGEATGDAEEEAAAAEAVGRLATSLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAATLNGLFWLLSSSSLRPFFLLSISLLTYFLLDLWHPRFLPDVSAPPPEEPHSDSEGAGSGAQPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKNAPPAGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALSRELGDGEETELAPPEDLLSAPPALSKQALDTEEEGAADKETLLQLSSPLHFVNTHFNGAGSPQEGVKCPPGGPVETLSPEAVSGDLMAPSSTLSPQLCLAESGPVTLLSPSVLPSLPQDSPQALTAPEEEEALTTEDFELLDQGELEQLNAELGLGPEMPPKPPDVLPPPPLGPDSHSLVQSDQEAHAVVEP", "length": 541 }, "evidence": [ { "id": "F1SR88", "url": "https://omabrowser.org/oma/group/F1SR88/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NS82-1", "protein_name": "Reticulophagy regulator 2", "gene_name": "Retreg2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSGGGNTGAGGTSGLGLGLGLSLGMGEATGDAEEEAAAAEAVGRLATSLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAATLNGLFWLLSSSSLRPFFLLSISLLTYFLLDLWHPRFLPDVSAPPPEEPHSDSEGAGSGAQPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCARGCAACAVLAVLGHYVPGVMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEADALHHKHDKRKRQGKSAPPAGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEEALNRELGEGEETELASPEDLLSAPPALSKQALDTEEEGAADKEALLQLSSPLHFVNTHFNGAGSPQDGVKCPPGAPVKTLSPEAVSGDLMAPSSTLSPQLCLAESGPVTPLSPSVLPSLPQDSPQPLAAPEEEEALTTEDFELLDQGELEQLNAELGLGPEMPPKPPDVLPPPPLGADSHSLVQSDQEAHAEVEP", "length": 541 }, "evidence": [ { "id": "F1SR88", "url": "https://omabrowser.org/oma/group/F1SR88/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8NC44-1", "protein_name": "Reticulophagy regulator 2", "gene_name": "RETREG2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASGGGGGNTGAGGGPGMGLSLGLGLGLSLGMSEATSEAEEEAATAEAVGRLATTLWLRLRGWEAVLAAAQRLLVWEKPLHSLVTAAALNGLFWLLSSSSLRPFFLLSVSLLAYFLLDLWQPRFLPDVSASSPEEPHSDSEGAGSGARPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCVRVCSGCAVLAVLGHYVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEANALHHKHDKRKRQGKNAPPGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGGFSVSRATTPQLTDVSEDLDQQSLPSEPEETLSRDLGEGEEGELAPPEDLLGRPQALSRQALDSEEEEEDVAAKETLLRLSSPLHFVNTHFNGAGSPPDGVKCSPGGPVETLSPETVSGGLTALPGTLSPPLCLVGSDPAPSPSILPPVPQDSPQPLPAPEEEEALTTEDFELLDQGELEQLNAELGLEPETPPKPPDAPPLGPDIHSLVQSDQEAQAVAEP", "length": 543 }, "evidence": [ { "id": "F1SR88", "url": "https://omabrowser.org/oma/group/F1SR88/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SR88", "url": "https://www.uniprot.org/uniprotkb/F1SR88" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SR88", "url": "https://www.uniprot.org/uniprotkb/F1SR88" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum-autophagosome adaptor activity", "id": "GO:0140506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140506", "evidence": [ { "database": "UniProtKB", "id": "F1SR88", "url": "https://www.uniprot.org/uniprotkb/F1SR88" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SR88-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 542, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SR88-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SR88" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SR88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR88" }, { "id": "PF24456", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24456" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RETREG1-3/ARL6IP-like N-terminal reticulon-homology", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 245, "start_aa": "Trp", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SU64-1", "uniprot_ac": "F1SU64", "uniprot_id": "F1SU64_PIG", "mass": { "chemical_mass": 24611.0, "monoisotopic_mass": 24611.0 }, "refseq": { "ac": "XP_003124869", "name": "myelin and lymphocyte protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124869" }, "gene_names": [ { "name": "MAL", "type": "recommended", "evidence": [ { "id": "F1SU64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU64" } ] }, { "name": "MAL", "type": "synonym", "evidence": [ { "id": "XP_003124869", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124869" } ] } ], "protein_names": [ { "name": "Myelin and lymphocyte protein", "type": "recommended", "evidence": [ { "id": "F1SU64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU64/entry#names_and_taxonomy" } ] }, { "name": "myelin and lymphocyte protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003124869", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124869" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SU64", "url": "https://www.uniprot.org/uniprotkb/F1SU64" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAL", "url": "https://www.uniprot.org/uniprotkb/F1SU64", "locus": {} } ], "crossref": [ { "id": "F1SU64", "url": "https://alphafold.ebi.ac.uk/entry/F1SU64", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008115", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008115", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521617", "url": "https://www.ncbi.nlm.nih.gov/gene/100521617", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008253", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008253", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013295", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013295", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521617", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521617", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2RFS7", "url": "https://www.orthodb.org/?gene=A0A5G2RFS7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SU64", "url": "https://www.orthodb.org/?gene=F1SU64", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22776:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22776:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01284", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01284", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003124869", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124869", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QL74", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QL74-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL74-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFS7", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RFS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RFS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU64", "url": "https://www.uniprot.org/uniprotkb/F1SU64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU64-1", "url": "https://www.uniprot.org/uniprotkb/F1SU64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALGRSPGARPTFSDGCSPVAAARAPPSSSQARLLLIRARWLPGHWAPPSKRAVSAEPEPRASRCEADAQPASMAPSAVSGGSSLPSGFAVFITFPDLLFIFEFIFGGLVWILVASSHVPIPLVQGWVMFVSVFCFIATTALLFLYVIGAHGSRTFWINLDAAYHCIASLFYFGASVLEALVTIRMQDGYTYKQYHENISAVVFSYVVTLLYVIHAVFSLIRWKSS", "length": 226, "header": "tr|F1SU64-1|F1SU64_PIG Isoform 1 of Myelin and lymphocyte protein OS=Sus scrofa OX=9823 GN=MAL PE=3 SV=2 CANONICAL=F1SU64-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QL74-1", "url": "https://www.uniprot.org/uniprotkb/F1SU64/entry#A0A5G2QL74-1", "sequence": { "sequence": "MAPSAVSGGSSLPSGFAVFITFPDLLFIFEFDAAYHCIASLFYFGASVLEALVTIRMQDGYTYKQYHENISAVVFSYVVTLLYVIHAVFSLIRWKSS", "length": 97, "header": "tr|A0A5G2QL74-1|F1SU64_PIG Computationally mapped isoform of Myelin and lymphocyte protein OS=Sus scrofa OX=9823 GN=MAL PE=3 SV=1 CANONICAL=F1SU64-1" }, "locus": { "chromosome": "3", "start_pos": 46241674, "end_pos": 46224132, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000072207.2", "url": "https://www.ensembl.org/id/ENSSSCT00000072207.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065311.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065311.1" } ] } }, { "isoform_ac": "A0A5G2RFS7-1", "url": "https://www.uniprot.org/uniprotkb/F1SU64/entry#A0A5G2RFS7-1", "sequence": { "sequence": "MAPSAVSGGSSLPSGFAVFITFPDLLFIFEFIFGGLVWILVASSHVPIPLVQGWVMFVSVFCFIATTALLFLYVIGAHGSRTFWINLVFSYVVTLLYVIHAVFSLIRWKSS", "length": 111, "header": "tr|A0A5G2RFS7-1|F1SU64_PIG Computationally mapped isoform of Myelin and lymphocyte protein OS=Sus scrofa OX=9823 GN=MAL PE=3 SV=1 CANONICAL=F1SU64-1" }, "locus": { "chromosome": "3", "start_pos": 46241674, "end_pos": 46224132, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067685.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067685.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073722.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073722.1" } ] } }, { "isoform_ac": "F1SU64-1", "url": "https://www.uniprot.org/uniprotkb/F1SU64/entry#F1SU64-1", "sequence": { "sequence": "MALGRSPGARPTFSDGCSPVAAARAPPSSSQARLLLIRARWLPGHWAPPSKRAVSAEPEPRASRCEADAQPASMAPSAVSGGSSLPSGFAVFITFPDLLFIFEFIFGGLVWILVASSHVPIPLVQGWVMFVSVFCFIATTALLFLYVIGAHGSRTFWINLDAAYHCIASLFYFGASVLEALVTIRMQDGYTYKQYHENISAVVFSYVVTLLYVIHAVFSLIRWKSS", "length": 226, "header": "tr|F1SU64-1|F1SU64_PIG Isoform 1 of Myelin and lymphocyte protein OS=Sus scrofa OX=9823 GN=MAL PE=3 SV=2 CANONICAL=F1SU64-1" }, "locus": { "chromosome": "3", "start_pos": 46241893, "end_pos": 46224132, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008891.6", "url": "https://www.ensembl.org/id/ENSSSCT00000008891.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008665.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008665.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QL74", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QL74" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521617", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521617", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SU64", "url": "https://www.uniprot.org/uniprotkb/F1SU64" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of myelin sheath", "id": "GO:0019911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019911", "evidence": [ { "database": "UniProtKB", "id": "F1SU64", "url": "https://www.uniprot.org/uniprotkb/F1SU64" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "myelination", "id": "GO:0042552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042552", "evidence": [ { "database": "UniProtKB", "id": "F1SU64", "url": "https://www.uniprot.org/uniprotkb/F1SU64" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SU64-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 226, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SU64-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SU64" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SU64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU64" }, { "id": "PS51225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MARVEL", "eco_id": "ECO_0000259", "start_pos": 91, "end_pos": 224, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 198, "end_pos": 200 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5N0-1", "uniprot_ac": "F2Z5N0", "uniprot_id": "F2Z5N0_PIG", "mass": { "chemical_mass": 27399.0, "monoisotopic_mass": 27399.0 }, "refseq": {}, "gene_names": [ { "name": "PSMA6", "type": "recommended", "evidence": [ { "id": "F2Z5N0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ] } ], "protein_names": [ { "name": "Proteasome subunit alpha type", "type": "recommended", "evidence": [ { "id": "F2Z5N0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the 20S core proteasome complex involved in the proteolytic degradation of most intracellular proteins. This complex plays numerous essential roles within the cell by associating with different regulatory particles. Associated with two 19S regulatory particles, forms the 26S proteasome and thus participates in the ATP-dependent degradation of ubiquitinated proteins. The 26S proteasome plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins that could impair cellular functions, and by removing proteins whose functions are no longer required. Associated with the PA200 or PA28, the 20S proteasome mediates ubiquitin-independent protein degradation. This type of proteolysis is required in several pathways including spermatogenesis (20S-PA200 complex) or generation of a subset of MHC class I-presented antigenic peptides (20S-PA28 complex).", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0#function" }, { "database": "UniProtKB", "id": "ARBA00003876", "url": "https://www.uniprot.org/uniprotkb/ARBA00003876#function" }, { "database": "UniProtKB", "id": "A0A8D2BTD3", "url": "https://www.uniprot.org/uniprotkb/A0A8D2BTD3#function" }, { "database": "UniProtKB", "id": "A0A5G2QMN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMA6", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0", "locus": { "chromosome": "7", "start_pos": 64578243, "end_pos": 64616491, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000054516", "url": "https://www.ensembl.org/id/ENSSSCG00000054516" } ] } } ], "crossref": [ { "id": "ENSSSCG00000001950", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000001950", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03754", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03754", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000426", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000426", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YGYDMPV", "url": "https://omabrowser.org/oma/group/YGYDMPV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10584", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10584", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169091", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1234176", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1236978", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174084", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174154", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174184", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-187577", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-349425", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-350562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-382556", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4608870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641258", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5358346", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607761", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607764", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610780", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610785", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5632684", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5658442", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5668541", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5676590", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5687128", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68867", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68949", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69017", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69601", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75815", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8852276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854050", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939902", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8941858", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948751", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9020702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9755511", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9766229", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9931269", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9932298", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QMN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QMN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D2BTD3", "url": "https://www.uniprot.org/uniprotkb/A0A8D2BTD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D2BTD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D2BTD3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5N0-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD", "length": 246, "header": "tr|F2Z5N0-1|F2Z5N0_PIG Isoform 1 of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA6 PE=1 SV=1 CANONICAL=F2Z5N0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QMN2-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0/entry#A0A5G2QMN2-1", "sequence": { "sequence": "MAGRPKEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD", "length": 227, "header": "tr|A0A5G2QMN2-1|F2Z5N0_PIG Computationally mapped isoform of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA6 PE=1 SV=1 CANONICAL=F2Z5N0-1" }, "locus": { "chromosome": "7", "start_pos": 64616292, "end_pos": 64578411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000082030.2", "url": "https://www.ensembl.org/id/ENSSSCT00000082030.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065298.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065298.1" } ] } }, { "isoform_ac": "A0A8D2BTD3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0/entry#A0A8D2BTD3-1", "sequence": { "sequence": "MHRCHTLSYTEAHSFKVVTEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD", "length": 240, "header": "tr|A0A8D2BTD3-1|F2Z5N0_PIG Computationally mapped isoform of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA6 PE=1 SV=1 CANONICAL=F2Z5N0-1" }, "locus": { "chromosome": "7", "start_pos": 64602699, "end_pos": 64578411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071133.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071133.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065331.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065331.1" } ] } }, { "isoform_ac": "F2Z5N0-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0/entry#F2Z5N0-1", "sequence": { "sequence": "MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD", "length": 246, "header": "tr|F2Z5N0-1|F2Z5N0_PIG Isoform 1 of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA6 PE=1 SV=1 CANONICAL=F2Z5N0-1" }, "locus": { "chromosome": "7", "start_pos": 64603258, "end_pos": 64578411, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002183.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002183.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002132.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002132.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QMN2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QMN2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1169091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "resource": "Reactome", "description": "Activation of NF-kappaB in B cells" }, { "id": "R-SSC-1234176", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "resource": "Reactome", "description": "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha" }, { "id": "R-SSC-1236978", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "resource": "Reactome", "description": "Cross-presentation of soluble exogenous antigens (endosomes)" }, { "id": "R-SSC-174084", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "resource": "Reactome", "description": "Autodegradation of Cdh1 by Cdh1:APC/C" }, { "id": "R-SSC-174154", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of Securin" }, { "id": "R-SSC-174178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "resource": "Reactome", "description": "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1" }, { "id": "R-SSC-174184", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "resource": "Reactome", "description": "Cdc20:Phospho-APC/C mediated degradation of Cyclin A" }, { "id": "R-SSC-187577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "resource": "Reactome", "description": "SCF(Skp2)-mediated degradation of p27/p21" }, { "id": "R-SSC-202424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "resource": "Reactome", "description": "Downstream TCR signaling" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-349425", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "resource": "Reactome", "description": "Autodegradation of the E3 ubiquitin ligase COP1" }, { "id": "R-SSC-350562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "resource": "Reactome", "description": "Regulation of ornithine decarboxylase (ODC)" }, { "id": "R-SSC-382556", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "resource": "Reactome", "description": "ABC-family protein mediated transport" }, { "id": "R-SSC-450408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "resource": "Reactome", "description": "AUF1 (hnRNP D0) binds and destabilizes mRNA" }, { "id": "R-SSC-4608870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "resource": "Reactome", "description": "Asymmetric localization of PCP proteins" }, { "id": "R-SSC-4641257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "resource": "Reactome", "description": "Degradation of AXIN" }, { "id": "R-SSC-4641258", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "resource": "Reactome", "description": "Degradation of DVL" }, { "id": "R-SSC-5358346", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "resource": "Reactome", "description": "Hedgehog ligand biogenesis" }, { "id": "R-SSC-5607761", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "resource": "Reactome", "description": "Dectin-1 mediated noncanonical NF-kB signaling" }, { "id": "R-SSC-5607764", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "resource": "Reactome", "description": "CLEC7A (Dectin-1) signaling" }, { "id": "R-SSC-5610780", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "resource": "Reactome", "description": "Degradation of GLI1 by the proteasome" }, { "id": "R-SSC-5610785", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "resource": "Reactome", "description": "GLI3 is processed to GLI3R by the proteasome" }, { "id": "R-SSC-5632684", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "resource": "Reactome", "description": "Hedgehog 'on' state" }, { "id": "R-SSC-5658442", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "resource": "Reactome", "description": "Regulation of RAS by GAPs" }, { "id": "R-SSC-5668541", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "resource": "Reactome", "description": "TNFR2 non-canonical NF-kB pathway" }, { "id": "R-SSC-5676590", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "resource": "Reactome", "description": "NIK-->noncanonical NF-kB signaling" }, { "id": "R-SSC-5687128", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "resource": "Reactome", "description": "MAPK6/MAPK4 signaling" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-68867", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "resource": "Reactome", "description": "Assembly of the pre-replicative complex" }, { "id": "R-SSC-68949", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "resource": "Reactome", "description": "Orc1 removal from chromatin" }, { "id": "R-SSC-69017", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "resource": "Reactome", "description": "CDK-mediated phosphorylation and removal of Cdc6" }, { "id": "R-SSC-69481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "resource": "Reactome", "description": "G2/M Checkpoints" }, { "id": "R-SSC-69601", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "resource": "Reactome", "description": "Ubiquitin-Mediated Degradation of Phosphorylated Cdc25A" }, { "id": "R-SSC-75815", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "resource": "Reactome", "description": "Ubiquitin-dependent degradation of Cyclin D" }, { "id": "R-SSC-8852276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "resource": "Reactome", "description": "The role of GTSE1 in G2/M progression after G2 checkpoint" }, { "id": "R-SSC-8854050", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "resource": "Reactome", "description": "FBXL7 down-regulates AURKA during mitotic entry and in early mitosis" }, { "id": "R-SSC-8939236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "resource": "Reactome", "description": "RUNX1 regulates transcription of genes involved in differentiation of HSCs" }, { "id": "R-SSC-8939902", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "resource": "Reactome", "description": "Regulation of RUNX2 expression and activity" }, { "id": "R-SSC-8941858", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "resource": "Reactome", "description": "Regulation of RUNX3 expression and activity" }, { "id": "R-SSC-8948751", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "resource": "Reactome", "description": "Regulation of PTEN stability and activity" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-9020702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "resource": "Reactome", "description": "Interleukin-1 signaling" }, { "id": "R-SSC-9755511", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "resource": "Reactome", "description": "KEAP1-NFE2L2 pathway" }, { "id": "R-SSC-9766229", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "resource": "Reactome", "description": "Degradation of CDH1" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" }, { "id": "R-SSC-9931269", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "resource": "Reactome", "description": "AMPK-induced ERAD and lysosome mediated degradation of PD-L1(CD274)" }, { "id": "R-SSC-9932298", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "resource": "Reactome", "description": "Degradation of CRY and PER proteins" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" } ], "orthologs": [ { "uniprot_canonical_ac": "E1JGZ9-1", "protein_name": "Proteasome subunit alpha type", "gene_name": "Prosalpha1R", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVLAIDFKPNGIEIGVVSKSDPTFRILDEREIEEHLTKIAEKD", "length": 244 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "F1NEQ6-1", "protein_name": "Proteasome subunit alpha type", "gene_name": "PSMA6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDSAVIVTQKKVPDKLLDSNTVTHLFSITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYDIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEHGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTYEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTETEIDMHLVALAERD", "length": 246 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O81147-1", "protein_name": "Proteasome subunit alpha type-6-B", "gene_name": "PAA2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVLQEDFKATEIEVGVVRADDPLFRSLRTEEIDEHLTAISERD", "length": 246 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P21243-1", "protein_name": "Proteasome subunit alpha type-1", "gene_name": "SCL1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSGAAAASAAGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDKFFTLSAENIEERLVAIAEQD", "length": 252 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P60900-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "PSMA6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD", "length": 246 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P60901-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "Psma6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD", "length": 246 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2YDE4-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "PSMA6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD", "length": 246 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54XM7-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "psmA6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSRSGTAGYDMSIIFSPQGKLYQIEYAFKAIKTGGLTSVGIRGKDCVVVATQKKIPDKLIDPKSVTSLYKLTDYIGCVQTGIVPDSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSLIVMAISTLQSVLGADLKSSDLEIGICTMDNRKFVIMTDEDIDSQLTKLAERD", "length": 250 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9QUM9-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "Psma6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAERD", "length": 246 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9XZJ4-1", "protein_name": "Proteasome subunit alpha type-6", "gene_name": "Prosalpha1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVLAIDFKPNGIEIGVVSKSDPTFRILDEREIEEHLTKIAEKD", "length": 244 }, "evidence": [ { "id": "F2Z5N0", "url": "https://omabrowser.org/oma/group/F2Z5N0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 10, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "proteasome core complex, alpha-subunit complex", "id": "GO:0019773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019773", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "sperm end piece", "id": "GO:0097229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097229", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "nuclear matrix", "id": "GO:0016363", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016363", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "P-body", "id": "GO:0000932", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000932", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "ciliary tip", "id": "GO:0097542", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097542", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "proteolysis involved in protein catabolic process", "id": "GO:0051603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051603", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "response to oxidative stress", "id": "GO:0006979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006979", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "regulation of proteasomal protein catabolic process", "id": "GO:0061136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061136", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" }, { "name": "NF-kappaB binding", "id": "GO:0051059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051059", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N0", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5N0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N0" }, { "id": "PS00388", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00388" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Proteasome alpha-type subunits", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 31, "start_aa": "Phe", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5F8-1", "uniprot_ac": "I3L5F8", "uniprot_id": "I3L5F8_PIG", "mass": { "chemical_mass": 38675.0, "monoisotopic_mass": 38675.0 }, "refseq": {}, "gene_names": [ { "name": "TXNDC15", "type": "recommended", "evidence": [ { "id": "I3L5F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5F8" } ] } ], "protein_names": [ { "name": "Thioredoxin domain containing 15", "type": "synonym", "evidence": [ { "id": "I3L5F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5F8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5F8", "url": "https://www.uniprot.org/uniprotkb/I3L5F8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TXNDC15", "url": "https://www.uniprot.org/uniprotkb/I3L5F8", "locus": { "chromosome": "2", "start_pos": 137080106, "end_pos": 137060893, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026106", "url": "https://www.ensembl.org/id/ENSSSCG00000026106" } ] } } ], "crossref": [ { "id": "I3L5F8", "url": "https://alphafold.ebi.ac.uk/entry/I3L5F8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026106", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026106", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02999", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02999", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042418", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042418", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14684", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14684", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14684:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14684:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00085", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QNH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QNH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5F8", "url": "https://www.uniprot.org/uniprotkb/I3L5F8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5F8-1", "url": "https://www.uniprot.org/uniprotkb/I3L5F8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VGRRPPRTMRLLGWWQVLLWVLGPPARGQEVAESRWSEEQPAYPFQVGAVYLGEEEPAGDPAGPDAAAEEAAVLGLEADGDRVVMLSVIPGEAEDNLSPEPGGGGTCGAGGQEDSRCHLRESLFSLDSSGSFPEREEEYYTEPEVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADHIGPLPSTLIKSVDWLLVFSLFFLISFIMYATIRTESIRWLIPGQEQDHVE", "length": 352, "header": "tr|I3L5F8-1|I3L5F8_PIG Isoform 1 of Thioredoxin domain containing 15 OS=Sus scrofa OX=9823 GN=TXNDC15 PE=1 SV=2 CANONICAL=I3L5F8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QNH1-1", "url": "https://www.uniprot.org/uniprotkb/I3L5F8/entry#A0A5G2QNH1-1", "sequence": { "sequence": "GRRPPRTMRLLGWWQVLLWVLGPPARGQEVAESRWSEEQPAYPFQVGAVYLGEEEPAGDPAGPDAAAEEAAVLGLEADGDRVVMLSVIPGEAEDNLSPEPGGGGTCGAGGQEDSRCHLRESLFSLDSSGSFPEREEEYYTEPEVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADHIGPLPSTLIKSVDWLLVFSLFFLISFIMYATIRTESIRWLIPGQEQDHVE", "length": 351, "header": "tr|A0A5G2QNH1-1|I3L5F8_PIG Computationally mapped isoform of Thioredoxin domain containing 15 OS=Sus scrofa OX=9823 GN=TXNDC15 PE=1 SV=2 CANONICAL=I3L5F8-1" }, "locus": { "chromosome": "2", "start_pos": 137078734, "end_pos": 137061048, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083459.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083459.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066229.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066229.2" } ] } }, { "isoform_ac": "I3L5F8-1", "url": "https://www.uniprot.org/uniprotkb/I3L5F8/entry#I3L5F8-1", "sequence": { "sequence": "VGRRPPRTMRLLGWWQVLLWVLGPPARGQEVAESRWSEEQPAYPFQVGAVYLGEEEPAGDPAGPDAAAEEAAVLGLEADGDRVVMLSVIPGEAEDNLSPEPGGGGTCGAGGQEDSRCHLRESLFSLDSSGSFPEREEEYYTEPEVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADHIGPLPSTLIKSVDWLLVFSLFFLISFIMYATIRTESIRWLIPGQEQDHVE", "length": 352, "header": "tr|I3L5F8-1|I3L5F8_PIG Isoform 1 of Thioredoxin domain containing 15 OS=Sus scrofa OX=9823 GN=TXNDC15 PE=1 SV=2 CANONICAL=I3L5F8-1" }, "locus": { "chromosome": "2", "start_pos": 137078734, "end_pos": 137061044, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027740.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027740.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019257.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019257.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QNH1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QNH1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of smoothened signaling pathway", "id": "GO:0045880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045880", "evidence": [ { "database": "UniProtKB", "id": "I3L5F8", "url": "https://www.uniprot.org/uniprotkb/I3L5F8" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "I3L5F8", "url": "https://www.uniprot.org/uniprotkb/I3L5F8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "I3L5F8", "url": "https://www.uniprot.org/uniprotkb/I3L5F8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 285, "end_pos": 287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5F8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 352, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5F8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5F8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5F8" }, { "id": "PS51352", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51352" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioredoxin", "eco_id": "ECO_0000259", "start_pos": 145, "end_pos": 288, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 }, { "start_pos": 173, "end_pos": 175 }, { "start_pos": 179, "end_pos": 181 }, { "start_pos": 186, "end_pos": 188 }, { "start_pos": 198, "end_pos": 200 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 285, "end_pos": 287 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSH7-1", "uniprot_ac": "F1SSH7", "uniprot_id": "F1SSH7_PIG", "mass": { "chemical_mass": 29795.0, "monoisotopic_mass": 29795.0 }, "refseq": {}, "gene_names": [ { "name": "TMED4", "type": "recommended", "evidence": [ { "id": "F1SSH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ] } ], "protein_names": [ { "name": "Transmembrane p24 trafficking protein 4", "type": "synonym", "evidence": [ { "id": "F1SSH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSH7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMED4", "url": "https://www.uniprot.org/uniprotkb/F1SSH7", "locus": { "chromosome": "18", "start_pos": 50702705, "end_pos": 50699470, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016744", "url": "https://www.ensembl.org/id/ENSSSCG00000016744" } ] } } ], "crossref": [ { "id": "F1SSH7", "url": "https://alphafold.ebi.ac.uk/entry/F1SSH7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016744", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016744", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22811", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22811", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01105", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01105", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QPA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QPA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPA9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVP0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVP0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP13", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FP13-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FP13-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSH7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLPALLLLALCAAGARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEDRIRPVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRLGRIKRRDNSSPSGSSHCLPLYLGIMFEMYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV", "length": 259, "header": "tr|F1SSH7-1|F1SSH7_PIG Isoform 1 of Transmembrane p24 trafficking protein 4 OS=Sus scrofa OX=9823 GN=TMED4 PE=1 SV=4 CANONICAL=F1SSH7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QPA9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH7/entry#A0A5G2QPA9-1", "sequence": { "sequence": "MGLPALLLLALCAAGARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEGKVRVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV", "length": 229, "header": "tr|A0A5G2QPA9-1|F1SSH7_PIG Computationally mapped isoform of Transmembrane p24 trafficking protein 4 OS=Sus scrofa OX=9823 GN=TMED4 PE=1 SV=2 CANONICAL=F1SSH7-1" }, "locus": { "chromosome": "18", "start_pos": 50701462, "end_pos": 50699566, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000081756.2", "url": "https://www.ensembl.org/id/ENSSSCT00000081756.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066535.2", "url": "https://www.ensembl.org/id/ENSSSCP00000066535.2" } ] } }, { "isoform_ac": "A0A5G2QVP0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH7/entry#A0A5G2QVP0-1", "sequence": { "sequence": "MAGVWVGRRRAMGLPALLLLALCAAGARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEDRIRPVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV", "length": 192, "header": "tr|A0A5G2QVP0-1|F1SSH7_PIG Computationally mapped isoform of Transmembrane p24 trafficking protein 4 OS=Sus scrofa OX=9823 GN=TMED4 PE=1 SV=3 CANONICAL=F1SSH7-1" }, "locus": { "chromosome": "18", "start_pos": 50701462, "end_pos": 50699533, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089183.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089183.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068210.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068210.2" } ] } }, { "isoform_ac": "A0A8W4FP13-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH7/entry#A0A8W4FP13-1", "sequence": { "sequence": "MGLPALLLLALCAAGARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEDRIRPVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV", "length": 230, "header": "tr|A0A8W4FP13-1|F1SSH7_PIG Computationally mapped isoform of Transmembrane p24 trafficking protein 4 OS=Sus scrofa OX=9823 GN=TMED4 PE=1 SV=1 CANONICAL=F1SSH7-1" }, "locus": { "chromosome": "18", "start_pos": 50701462, "end_pos": 50699566, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095406.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095406.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080045.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080045.1" } ] } }, { "isoform_ac": "F1SSH7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH7/entry#F1SSH7-1", "sequence": { "sequence": "MGLPALLLLALCAAGARGLYFHIGETEKRCFIEEIPDETMVIGNYRTQMWDKQKEVFLPSTPGLGMHVEVKDPEDRIRPVEGEPLTAVLQVVLSRQYGSEGRFTFTSHTPGDHQICLHSNSTRMTLFAGGRLRVHLDIQVGEHANNYPEIAAKDKLTELQLRARQLLDQVEQIQKEQDYQRLGRIKRRDNSSPSGSSHCLPLYLGIMFEMYREERFRLTSESTNQRVLWWSIAQTVILILTGIWQMRHLKSFFEAKKLV", "length": 259, "header": "tr|F1SSH7-1|F1SSH7_PIG Isoform 1 of Transmembrane p24 trafficking protein 4 OS=Sus scrofa OX=9823 GN=TMED4 PE=1 SV=4 CANONICAL=F1SSH7-1" }, "locus": { "chromosome": "18", "start_pos": 50701462, "end_pos": 50699566, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018226.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018226.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017734.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017734.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QPA9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QPA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ], "pmid": "" }, { "name": "COPII-coated ER to Golgi transport vesicle", "id": "GO:0030134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030134", "evidence": [ { "database": "UniProtKB", "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ], "pmid": "" }, { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "F1SSH7", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" }, { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSH7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 259, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSH7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSH7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSH7" }, { "id": "PS50866", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50866" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GOLD", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 140, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 }, { "start_pos": 190, "end_pos": 192 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L6P0-1", "uniprot_ac": "I3L6P0", "uniprot_id": "I3L6P0_PIG", "mass": { "chemical_mass": 48202.0, "monoisotopic_mass": 48202.0 }, "refseq": {}, "gene_names": [ { "name": "COLQ", "type": "recommended", "evidence": [ { "id": "I3L6P0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6P0" } ] } ], "protein_names": [ { "name": "Collagen like tail subunit of asymmetric acetylcholinesterase", "type": "synonym", "evidence": [ { "id": "I3L6P0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6P0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L6P0", "url": "https://www.uniprot.org/uniprotkb/I3L6P0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "COLQ", "url": "https://www.uniprot.org/uniprotkb/I3L6P0", "locus": { "chromosome": "13", "start_pos": 2677740, "end_pos": 2755307, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028911", "url": "https://www.ensembl.org/id/ENSSSCG00000028911" } ] } } ], "crossref": [ { "id": "I3L6P0", "url": "https://alphafold.ebi.ac.uk/entry/I3L6P0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028911", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028911", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24023:SF861", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24023:SF861", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2QQV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QQV9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RC69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RC69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6P0", "url": "https://www.uniprot.org/uniprotkb/I3L6P0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6P0-1", "url": "https://www.uniprot.org/uniprotkb/I3L6P0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVLHPVTLGIYLQLFFRFIVSQPTFLNSVLPISAALPGLDQRKRGGHRACCLLTPPPPPLFPPPFFRGGRSPLLSPDVKNLILELETTQPPCVQGSLSSPGPPGPQGPPGIPGKIGPKGEKGELGRPGRKGRPGPPGVPGMPGPVGWPGPEGPRGEKGDLGMMGLPGSRGPMGSKGYPGSRGEKGSRGERGDLGPKGEKGFPGFPGMLGQKGEMGPKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQTGRPGPPGPPGPPSAGQLVMGPKGERGFPGPPGRCLCGPPMNMNNPSYGESAYGPSSPRVPVIFVVNNQEELERLNTQNAIFRRDQRSLYFKDSLGWLPIQLTPFYPVDYPVDHRGSCGDGILQLGEECDDGNSDVGDNCIRDCRRAYCGDGHRHKGVEDCDGSDFGHLTCETYLPGSYGDLRCTPYCYIDSTPCRYFT", "length": 458, "header": "tr|I3L6P0-1|I3L6P0_PIG Isoform 1 of Collagen like tail subunit of asymmetric acetylcholinesterase OS=Sus scrofa OX=9823 GN=COLQ PE=4 SV=3 CANONICAL=I3L6P0-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QQV9-1", "url": "https://www.uniprot.org/uniprotkb/I3L6P0/entry#A0A5G2QQV9-1", "sequence": { "sequence": "MVVLHPVTLGIYLQLFFRFIVSQPTFLNSVLPISAALPGLDQRKRGGHRACCLLTPPPPPLFPPPFFRGGRSPGPPGIPGKIGPKGEKGELGRPGRKGRPGPPGVPGMPGPVGWPGPEGPRGEKGDLGMMGLPGSRGPMGSKGYPGSRGEKGSRGERGDLGPKGEKGFPGFPGMLGQKGEMGPKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQTGRPGPPGPPGPPSAGQLVMGPKGERGFPGPPGRCLCGPPMNMNNPSYGESAYGPSSPRVPVIFVVNNQEELERLNTQNAIFRRDQRSLYFKDSLGWLPIQLTPFYPVDYPVDHRGSCGDGILQLGEECDDGNSDVGDNCIRCRRAYCGDGHRHKGVEDCDGSDFGHLTCETYLPGSYGDLRCTPYCYIDSTPCRYFT", "length": 423, "header": "tr|A0A5G2QQV9-1|I3L6P0_PIG Computationally mapped isoform of Collagen like tail subunit of asymmetric acetylcholinesterase OS=Sus scrofa OX=9823 GN=COLQ PE=4 SV=1 CANONICAL=I3L6P0-1" }, "locus": { "chromosome": "13", "start_pos": 2755143, "end_pos": 2679077, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083924.2", "url": "https://www.ensembl.org/id/ENSSSCT00000083924.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000067124.1", "url": "https://www.ensembl.org/id/ENSSSCP00000067124.1" } ] } }, { "isoform_ac": "A0A5G2RC69-1", "url": "https://www.uniprot.org/uniprotkb/I3L6P0/entry#A0A5G2RC69-1", "sequence": { "sequence": "MTGPSFSLTHLFIISGLLCYSACCLALPGLDQRKRGGHRACCLLTPPPPPLFPPPFFRGGRSPLLSPDVKNLILELETTQPPCVQGSLSSPGPPGPQGPPGIPGKIGPKGEKGELGRPGRKGRPGPPGVPGMPGPVGWPGPEGPRGEKGDLGMMGLPGSRGPMGSKGYPGSRGEKGSRGERGDLGPKGEKGFPGFPGMLGQKGEMGPKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQTGRPGPPGPPGPPSAGQLVMGPKGERGFPGPPGRCLCGPPMNMNNPSYGESAYGPSSPRVPVIFVVNNQEELERLNTQNAIFRRDQRSLYFKDSLGWLPIQLTPFYPVDYPVDHRGSCGDGILQLGEECDDGNSDVGDNCIRCRRAYCGDGHRHKGVEDCDGSDFGHLTCETYLPGSYGDLRCTPYCYIDSTPCRYFT", "length": 447, "header": "tr|A0A5G2RC69-1|I3L6P0_PIG Computationally mapped isoform of Collagen like tail subunit of asymmetric acetylcholinesterase OS=Sus scrofa OX=9823 GN=COLQ PE=4 SV=1 CANONICAL=I3L6P0-1" }, "locus": { "chromosome": "13", "start_pos": 2734281, "end_pos": 2679077, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075114.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075114.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073966.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073966.1" } ] } }, { "isoform_ac": "I3L6P0-1", "url": "https://www.uniprot.org/uniprotkb/I3L6P0/entry#I3L6P0-1", "sequence": { "sequence": "MVVLHPVTLGIYLQLFFRFIVSQPTFLNSVLPISAALPGLDQRKRGGHRACCLLTPPPPPLFPPPFFRGGRSPLLSPDVKNLILELETTQPPCVQGSLSSPGPPGPQGPPGIPGKIGPKGEKGELGRPGRKGRPGPPGVPGMPGPVGWPGPEGPRGEKGDLGMMGLPGSRGPMGSKGYPGSRGEKGSRGERGDLGPKGEKGFPGFPGMLGQKGEMGPKGEPGIAGHRGPTGRPGKRGKQGQKGDSGVMGPPGKPGPSGQTGRPGPPGPPGPPSAGQLVMGPKGERGFPGPPGRCLCGPPMNMNNPSYGESAYGPSSPRVPVIFVVNNQEELERLNTQNAIFRRDQRSLYFKDSLGWLPIQLTPFYPVDYPVDHRGSCGDGILQLGEECDDGNSDVGDNCIRDCRRAYCGDGHRHKGVEDCDGSDFGHLTCETYLPGSYGDLRCTPYCYIDSTPCRYFT", "length": 458, "header": "tr|I3L6P0-1|I3L6P0_PIG Isoform 1 of Collagen like tail subunit of asymmetric acetylcholinesterase OS=Sus scrofa OX=9823 GN=COLQ PE=4 SV=3 CANONICAL=I3L6P0-1" }, "locus": { "chromosome": "13", "start_pos": 2755143, "end_pos": 2679077, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024153.4", "url": "https://www.ensembl.org/id/ENSSSCT00000024153.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019692.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019692.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QQV9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QQV9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "I3L6P0", "url": "https://www.uniprot.org/uniprotkb/I3L6P0" } ], "pmid": "" }, { "name": "heparin binding", "id": "GO:0008201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008201", "evidence": [ { "database": "UniProtKB", "id": "I3L6P0", "url": "https://www.uniprot.org/uniprotkb/I3L6P0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "extracellular matrix organization", "id": "GO:0030198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030198", "evidence": [ { "database": "UniProtKB", "id": "I3L6P0", "url": "https://www.uniprot.org/uniprotkb/I3L6P0" } ], "pmid": "" }, { "name": "negative regulation of synaptic transmission, cholinergic", "id": "GO:0032223", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032223", "evidence": [ { "database": "UniProtKB", "id": "I3L6P0", "url": "https://www.uniprot.org/uniprotkb/I3L6P0" } ], "pmid": "" }, { "name": "protein localization to synapse", "id": "GO:0035418", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035418", "evidence": [ { "database": "UniProtKB", "id": "I3L6P0", "url": "https://www.uniprot.org/uniprotkb/I3L6P0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "neuromuscular junction", "id": "GO:0031594", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031594", "evidence": [ { "database": "UniProtKB", "id": "I3L6P0", "url": "https://www.uniprot.org/uniprotkb/I3L6P0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L6P0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 458, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L6P0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L6P0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRW9-1", "uniprot_ac": "F1SRW9", "uniprot_id": "F1SRW9_PIG", "mass": { "chemical_mass": 132278.0, "monoisotopic_mass": 132278.0 }, "refseq": {}, "gene_names": [ { "name": "TTLL4", "type": "recommended", "evidence": [ { "id": "F1SRW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ] } ], "protein_names": [ { "name": "Tubulin tyrosine ligase like 4", "type": "synonym", "evidence": [ { "id": "F1SRW9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRW9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTLL4", "url": "https://www.uniprot.org/uniprotkb/F1SRW9", "locus": { "chromosome": "15", "start_pos": 120793194, "end_pos": 120773185, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016201", "url": "https://www.ensembl.org/id/ENSSSCG00000016201" } ] } } ], "crossref": [ { "id": "F1SRW9", "url": "https://alphafold.ebi.ac.uk/entry/F1SRW9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016201", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016201", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR004344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12241", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12241", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12241:SF162", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12241:SF162", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03133", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03133", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8955332", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8955332", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QT54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QT54-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT54-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRW9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASARTEHYSIGLCRGNSFKQSGSSGTVPTPPPEKPSEGKVWAQVHQQVKPIWKLEKKHVGTLSSGLGPGLLGVPPQPAYFFCPSTLCSSGTTAVIAGHGNSCYLRSLPDLFSSTLLYRRSNYRHKPYQQLESFCLRSGPSEKRPFSLPQKSLPVRLTASKASSSKVSRMASSSTDPYLSLGAAGEDPSGKSPASAVSGKIPSPLSAASSSYKPTLNNNSFMRPNSTKVPLSQTTESPKPVSSPKIQLVSWHHSGGTGDCVLQPVEHKVPKSSGPVLGDGPSHSTLSAPSSLHTSTTSVASPHHSQSTLAIRAEPRPGGLEGDSVSQTLTKEVRFTEAVRKLTARGFEKKPRQGSHFEQSYFLNPSLQWDLLNRNRRWPPAAGQQFPQEDAGAVSRVLPGASDTLELDSTVFCTKRISIHLLASQANGLSHSSACGSAIDSPPLGEDETPVLPSPPQPLGVAEVATRLSSIHLGKLGREGPKEARELALPARDIGSATDLQLDQAEAEDLEEELIDGLEDCCSHEENEEEEGDSECSSCSAVSPSSVAVISRNCMEIMTKPLSNEKVVRPALIYSLFPNVPPTIYFGTRDERVEKLPWEQRKLLRWKMSTVTPNIVKQTIGRSHFKISKRNDDWLGCWGHHMKSPSFRSIQEHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKEFSFFPQSFILPQDAKLLRKAWESGSRQKWIVKPPASARGIGIQVIHKWSQLPKRRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLGNKFMHLTNYSVNKKNAEYQANEDETACQGHKWALKALWSYLSQKGVNSDAIWEKIKDVVVKTIISSEPYVTSLLKMYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHSSSPLDISIKGQMIRDLLNLAGFVLPHAEDIISSSSSSSSCTTSLPSSPRDGCRMAPEYFTAQKMKKAYYLTQKIPDQDFYASVLDVLTPDDVRVLVEMEDEFSRRGQFERIFPSRISSRYLRFFEQPRYFNILTTQWEQKYHGNKLKGVDLLRSWCYKGFHTGAISDSAPVWSLPTSILTVPKGDVILSGFSKSEMGKLGKHGSSKGSIPLSEDGAVPKPKKTQASLPPFPRKPSSSKDSEDTSKEPSLSTQMLPVIKYSGQTSRLSASPSTQSTGDSLLAAVSP", "length": 1197, "header": "tr|F1SRW9-1|F1SRW9_PIG Isoform 1 of Tubulin tyrosine ligase like 4 OS=Sus scrofa OX=9823 GN=TTLL4 PE=3 SV=4 CANONICAL=F1SRW9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QT54-1", "url": "https://www.uniprot.org/uniprotkb/F1SRW9/entry#A0A5G2QT54-1", "sequence": { "sequence": "MASARTEHYSIGLCRGNSFKQSGSSGTVPTPPPEKPSEGKVWAQVHQQVKPIWKLEKKHVGTLSSGLGPGLLGVPPQPAYFFCPSTLCSSGTTAVIAGHGNSCYLRSLPDLFSSTLLYRRSNYRHKPYQQLESFCLRSGPSEKRPFSLPQKSLPVRLTASKASSSKVSRMASSSTDPYLSLGAAGEDPSGKSPASAVSGKIPSPLSAASSSYKPTLNNNSFMRPNSTKVPLSQTTESPKPVSSPKIQLVSWHHSGGTGDCVLQPVEHKVPKSSGPVLGDGPSHSTLSAPSSLHTSTTSVASPHHSQSTLAIRAEPRPGGLEGDSVSQTLTKEVRFTEAVRKLTARGFEKKPRQGSHFEQSYFLNPSLQWDLLNRNRRWPPAAGQQFPQEDAGAVSRVLPGASDTLELDSTVFCTKRISIHLLASQANGLSHSSACGSAIDSPPLGEDETPVLPSPPQPLGVAEVATRLSSIHLGKLGREGPKEARELALPARDIGSATDLQLDQAEAEDLEEELIDGLEDCCSHEENEEEEGDSECSSCSAVSPSSVAVISRNCMEIMTKPLSNEKVVRPALIYSLFPNVPPTIYFGTRDERVEKLPWEQRKLLRWKMSTVTPNIVKQTIGRSHFKISKRNDDWLGCWGHHMKSPSFRSIQEHQKPASARGIGIQVIHKWSQLPKRRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLGNKFMHLTNYSVNKKNAEYQANEDETACQGHKWALKALWSYLSQKGVNSDAIWEKIKDVVVKTIISSEPYVTSLLKMYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHSSSPLDISIKGQMIRDLLNLAGFVLPHAEDIISSSSSSSSCTTSLPSSPRDGCRMAPEYFTAQKMKKAYYLTQKIPDQDFYASVLDVLTPDDVRVLVEMEDEFSRRGQFERIFPSRISSRYLRFFEQPRYFNILTTQWEQKYHGNKLKGVDLLRSWCYKGFHTGAISDSAPVWSLPTSILTVPKGDVILSGFSKSEMGKLGKHGSSKGSIPLSEDGAVPKPKKTQASLPPFPRKPSSSKDSEDTSKEPSLSTQMLPVIKYSGQTSRLSASPSTQSTGDSLLAAVSP", "length": 1133, "header": "tr|A0A5G2QT54-1|F1SRW9_PIG Computationally mapped isoform of Tubulin tyrosine ligase like 4 OS=Sus scrofa OX=9823 GN=TTLL4 PE=3 SV=1 CANONICAL=F1SRW9-1" }, "locus": { "chromosome": "15", "start_pos": 120790781, "end_pos": 120773185, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067706.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067706.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000065172.1", "url": "https://www.ensembl.org/id/ENSSSCP00000065172.1" } ] } }, { "isoform_ac": "F1SRW9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRW9/entry#F1SRW9-1", "sequence": { "sequence": "MASARTEHYSIGLCRGNSFKQSGSSGTVPTPPPEKPSEGKVWAQVHQQVKPIWKLEKKHVGTLSSGLGPGLLGVPPQPAYFFCPSTLCSSGTTAVIAGHGNSCYLRSLPDLFSSTLLYRRSNYRHKPYQQLESFCLRSGPSEKRPFSLPQKSLPVRLTASKASSSKVSRMASSSTDPYLSLGAAGEDPSGKSPASAVSGKIPSPLSAASSSYKPTLNNNSFMRPNSTKVPLSQTTESPKPVSSPKIQLVSWHHSGGTGDCVLQPVEHKVPKSSGPVLGDGPSHSTLSAPSSLHTSTTSVASPHHSQSTLAIRAEPRPGGLEGDSVSQTLTKEVRFTEAVRKLTARGFEKKPRQGSHFEQSYFLNPSLQWDLLNRNRRWPPAAGQQFPQEDAGAVSRVLPGASDTLELDSTVFCTKRISIHLLASQANGLSHSSACGSAIDSPPLGEDETPVLPSPPQPLGVAEVATRLSSIHLGKLGREGPKEARELALPARDIGSATDLQLDQAEAEDLEEELIDGLEDCCSHEENEEEEGDSECSSCSAVSPSSVAVISRNCMEIMTKPLSNEKVVRPALIYSLFPNVPPTIYFGTRDERVEKLPWEQRKLLRWKMSTVTPNIVKQTIGRSHFKISKRNDDWLGCWGHHMKSPSFRSIQEHQKLNHFPGSFQIGRKDRLWRNLSRMQSRFGKKEFSFFPQSFILPQDAKLLRKAWESGSRQKWIVKPPASARGIGIQVIHKWSQLPKRRPLLVQRYLHKPYLISGSKFDLRIYVYVTSYDPLRIYLFSDGLVRFASCKYSPSMKSLGNKFMHLTNYSVNKKNAEYQANEDETACQGHKWALKALWSYLSQKGVNSDAIWEKIKDVVVKTIISSEPYVTSLLKMYVRRPYSCHELFGFDIMLDENLKPWVLEVNISPSLHSSSPLDISIKGQMIRDLLNLAGFVLPHAEDIISSSSSSSSCTTSLPSSPRDGCRMAPEYFTAQKMKKAYYLTQKIPDQDFYASVLDVLTPDDVRVLVEMEDEFSRRGQFERIFPSRISSRYLRFFEQPRYFNILTTQWEQKYHGNKLKGVDLLRSWCYKGFHTGAISDSAPVWSLPTSILTVPKGDVILSGFSKSEMGKLGKHGSSKGSIPLSEDGAVPKPKKTQASLPPFPRKPSSSKDSEDTSKEPSLSTQMLPVIKYSGQTSRLSASPSTQSTGDSLLAAVSP", "length": 1197, "header": "tr|F1SRW9-1|F1SRW9_PIG Isoform 1 of Tubulin tyrosine ligase like 4 OS=Sus scrofa OX=9823 GN=TTLL4 PE=3 SV=4 CANONICAL=F1SRW9-1" }, "locus": { "chromosome": "15", "start_pos": 120790781, "end_pos": 120773185, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017642.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017642.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017164.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017164.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 30, "start_aa": "Thr", "end_pos": 30, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr30", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QT54", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QT54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8955332", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8955332", "resource": "Reactome", "description": "Carboxyterminal post-translational modifications of tubulin" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ], "pmid": "" }, { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", "evidence": [ { "database": "UniProtKB", "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ], "pmid": "" }, { "name": "tubulin-glutamic acid ligase activity", "id": "GO:0070740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070740", "evidence": [ { "database": "UniProtKB", "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ], "pmid": "" }, { "name": "tubulin binding", "id": "GO:0015631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015631", "evidence": [ { "database": "UniProtKB", "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ], "pmid": "" }, { "name": "9+0 non-motile cilium", "id": "GO:0097731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097731", "evidence": [ { "database": "UniProtKB", "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "F1SRW9", "url": "https://www.uniprot.org/uniprotkb/F1SRW9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 218, "end_pos": 220, "annotation": "n_glycosylation_sequon" }, { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 674, "end_pos": 676, "annotation": "n_glycosylation_sequon" }, { "start_pos": 807, "end_pos": 809, "annotation": "n_glycosylation_sequon" }, { "start_pos": 905, "end_pos": 907, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRW9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1197, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRW9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRW9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 30 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 218, "end_pos": 220 }, { "start_pos": 225, "end_pos": 227 }, { "start_pos": 674, "end_pos": 676 }, { "start_pos": 807, "end_pos": 809 }, { "start_pos": 905, "end_pos": 907 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L6Y7-1", "uniprot_ac": "I3L6Y7", "uniprot_id": "I3L6Y7_PIG", "mass": { "chemical_mass": 145801.0, "monoisotopic_mass": 145801.0 }, "refseq": { "ac": "XP_020931116", "name": "pre-mRNA 3' end processing protein WDR33 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931116" }, "gene_names": [ { "name": "WDR33", "type": "recommended", "evidence": [ { "id": "I3L6Y7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7" } ] }, { "name": "WDR33", "type": "synonym", "evidence": [ { "id": "XP_020931116", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931116" } ] } ], "protein_names": [ { "name": "pre-mRNA 3' end processing protein WDR33", "type": "recommended", "evidence": [ { "id": "I3L6Y7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 33", "type": "synonym", "evidence": [ { "id": "I3L6Y7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein of 146 kDa", "type": "synonym", "evidence": [ { "id": "I3L6Y7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7/entry#names_and_taxonomy" } ] }, { "name": "pre-mRNA 3' end processing protein WDR33 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020931116", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931116" } ] } ], "function": [ { "annotation": "Essential for both cleavage and polyadenylation of pre-mRNA 3' ends.", "evidence": [ { "database": "UniProtKB", "id": "I3L6Y7", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7#function" }, { "database": "UniProtKB", "id": "ARBA00058681", "url": "https://www.uniprot.org/uniprotkb/ARBA00058681#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L6Y7", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR33", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7", "locus": { "chromosome": "15", "start_pos": 59638879, "end_pos": 59520065, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015861", "url": "https://www.ensembl.org/id/ENSSSCG00000015861" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015861", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015861", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517785", "url": "https://www.ncbi.nlm.nih.gov/gene/100517785", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517785", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517785", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RRHEQNS", "url": "https://omabrowser.org/oma/group/RRHEQNS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L6Y7", "url": "https://www.orthodb.org/?gene=I3L6Y7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22836", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22836", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22836:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22836:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-159231", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159231", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73856", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-77595", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77595", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020931116", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020931116", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QUM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QUM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6Y7", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6Y7-1", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPTPNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGNSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRETQGPAPQGMMLGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPPPQGSMLGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTALLGDGPRAPFNQEGQNAGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPERGPFRGAQDCRGPPDRRGPHPDFPDDFSRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSDGDGRGAARGPPGAWESRRPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEESFDAADEAARGRDLRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNRESGPGHEHFRDAPRPDHPPHDGHSPAGRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRGGKGRGGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASRGGGRGR", "length": 1336, "header": "tr|I3L6Y7-1|I3L6Y7_PIG Isoform 1 of pre-mRNA 3' end processing protein WDR33 OS=Sus scrofa OX=9823 GN=WDR33 PE=3 SV=3 CANONICAL=I3L6Y7-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QUM0-1", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7/entry#A0A5G2QUM0-1", "sequence": { "sequence": "MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGKFLLCHCTFLSSKR", "length": 256, "header": "tr|A0A5G2QUM0-1|I3L6Y7_PIG Computationally mapped isoform of pre-mRNA 3' end processing protein WDR33 OS=Sus scrofa OX=9823 GN=WDR33 PE=3 SV=2 CANONICAL=I3L6Y7-1" }, "locus": { "chromosome": "15", "start_pos": 59601857, "end_pos": 59562547, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075477.2", "url": "https://www.ensembl.org/id/ENSSSCT00000075477.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068528.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068528.2" } ] } }, { "isoform_ac": "I3L6Y7-1", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7/entry#I3L6Y7-1", "sequence": { "sequence": "MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPTPNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGNSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRETQGPAPQGMMLGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPPPQGSMLGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTALLGDGPRAPFNQEGQNAGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPERGPFRGAQDCRGPPDRRGPHPDFPDDFSRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSDGDGRGAARGPPGAWESRRPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEESFDAADEAARGRDLRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNRESGPGHEHFRDAPRPDHPPHDGHSPAGRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRGGKGRGGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASRGGGRGR", "length": 1336, "header": "tr|I3L6Y7-1|I3L6Y7_PIG Isoform 1 of pre-mRNA 3' end processing protein WDR33 OS=Sus scrofa OX=9823 GN=WDR33 PE=3 SV=3 CANONICAL=I3L6Y7-1" }, "locus": { "chromosome": "15", "start_pos": 59638463, "end_pos": 59562547, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029060.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029060.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019789.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019789.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1302, "start_aa": "Thr", "end_pos": 1302, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1302", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QUM0", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QUM0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517785", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517785", "resource": "KEGG Pathway" }, { "id": "R-SSC-159231", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159231", "resource": "Reactome", "description": "Transport of Mature mRNA Derived from an Intronless Transcript" }, { "id": "R-SSC-72187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "resource": "Reactome", "description": "mRNA 3'-end processing" }, { "id": "R-SSC-73856", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "resource": "Reactome", "description": "RNA Polymerase II Transcription Termination" }, { "id": "R-SSC-77595", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77595", "resource": "Reactome", "description": "Processing of Intronless Pre-mRNAs" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZXY5-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAGRGGDEARRAAGREGAGRDAGWTHFRNEIAMATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRVWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKIAMEQEQMGKDESNDIEMTIPGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPLPPPPEPLIDRKEDIKLEEKKKTQAEIEQEMAALQYTNPQLLEQLKIERLAQKQAEQVQPPPGGSLHGPQPFPGQGPMSQMPQGFQQPLPPQQIPMNMPQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPPGPHGPQGMPRPQDLHGHQGMQRHPGPHGPMGPPGPQGNAGPQGHLGPQGLPGSQTHLGPQGPPGPQGNLGPQGQGMQGPPGPRGMQGPLPHGMQGAPGSQGMQGPISQGPLMGLNPRGMQGPPGPRDNQGPTPQGMMMGHPQEMRGPHMQSGLLGHGPQEMRGLQGPPPQGAMLGPPQEMRGPQGQQGPPQGSMVGPQGNMQGPQGQPNPSRGPHPSQGPLPFQQQKTPLLGDGPRPPFNQDGQNPGPPPLIPGLGQQGGQGRLGPHNQGPGLNKGDSRGPPNHHMGPLSDRRHDQNSGGPDHGPERGLFRGGQEWGDGRDSRGMPDRRGPHPDFHDDFDRPDDFRDDFHPDKRFGHRLREFEGRGGPPLQDEKWRRGGPGPPFPPDHREFEGGGSNRGPPGAWEGRRPSDDRYPRDPEDARFRGRRDESFRRGGPSRHEGRGPRGRDGFPGPEDFGPDDTFDSPDENLRGRDHGARGRGRGAIRGGRKGLLPTPDEIPRFEGGRKPESWDGNREPGPRPDHPPHDGHSPANRERSSSLQGMDMASLPPRKRPWHDGPGTSDPREMDAPGGPPEERGKGRGNSGASQRAPKSARSNSLDGDHHDGFHRDEAFGGGPAGGSNPSRGGRSGSNWGRGNNMNSGQSRRGASRGGGRGR", "length": 1345 }, "evidence": [ { "id": "I3L6Y7", "url": "https://omabrowser.org/oma/group/I3L6Y7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BCT7-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQYTNPQLLEQLKIERLAQKQAEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQLSMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGIQRHPGPHGPLGPQGPPGPQGNAGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQGPAPQGMMLGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPPPQGSMLGPPQELRGPPGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTALLGDGPRAPFNQEGQNAGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSSGPEHGPERGPFRGSQDCRGPPDRRGPHPEFPDDFSRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDARGAARGPPGAWEGRRPGDDRFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASDETARGRDLRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMDAPGGPSEDRGGKGRGGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASRGGGRGR", "length": 1336 }, "evidence": [ { "id": "I3L6Y7", "url": "https://omabrowser.org/oma/group/I3L6Y7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8K4P0-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "Wdr33", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESSEIEMTIPGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQYTNPQLLEQLKIERLAQKQADQIQPPPSSGTPLLGPQPFSGQGPISQIPQGFQQPHPSQQMPLVPQMGPPGPQGQFRAPGPQGQMGPQGPPMHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPASQGHMGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPASQGIQGPLMGLNPRGMQGPPGPRENQGPAPQGLMIGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGMQGPPPQGSMLGPPQELRGPSGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKAPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDTRGPPNHHLGPMSERRHEQSGGPEHGPDRGPFRGGQDCRGPPDRRGSHPDFPDDFRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFNEGDGRGAARGPPGAWEGRRPGDDRFPRDPDDPRFRGRREESFRRGAPPRHEGRAPPRGRDNFPGPDDFGPEEGFDASDEAARGRDLRGRGRGTPRGGSRKCLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGSGTSEHREMEAQGGPSEDRGSKGRGGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSSSSSRGARSGSNWGRGSNMNSGPPRRGTSRGSGRGR", "length": 1330 }, "evidence": [ { "id": "I3L6Y7", "url": "https://omabrowser.org/oma/group/I3L6Y7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C0J8-1", "protein_name": "pre-mRNA 3' end processing protein WDR33", "gene_name": "WDR33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDESNEIEMTIPGLDWGMEEVMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAEIEQEMATLQYTNPQLLEQLKIERLAQKQVEQIQPPPSSGTPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQGPPGPQGHLGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPERGPFRGGQDCRGPPDRRGPHPDFPDDFSRPDDFHPDKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARGPPGAWEGRRPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEENFDASEEAARGRDLRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDTPRPDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGPGTSEHREMEAPGGPSEDRGGKGRGGPGPAQRVPKSGRSSSLDGEHHDGYHRDEPFGGPPGSGTPSRGGRSGSNWGRGSNMNSGPPRRGASRGGGRGR", "length": 1336 }, "evidence": [ { "id": "I3L6Y7", "url": "https://omabrowser.org/oma/group/I3L6Y7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L6Y7", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "I3L6Y7", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7" } ], "pmid": "" }, { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "I3L6Y7", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7" } ], "pmid": "" }, { "name": "mRNA cleavage and polyadenylation specificity factor complex", "id": "GO:0005847", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005847", "evidence": [ { "database": "UniProtKB", "id": "I3L6Y7", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA 3'-end processing", "id": "GO:0031124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031124", "evidence": [ { "database": "UniProtKB", "id": "I3L6Y7", "url": "https://www.uniprot.org/uniprotkb/I3L6Y7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1302 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV18-1", "uniprot_ac": "F1SV18", "uniprot_id": "F1SV18_PIG", "mass": { "chemical_mass": 58779.0, "monoisotopic_mass": 58779.0 }, "refseq": {}, "gene_names": [ { "name": "POGLUT3", "type": "recommended", "evidence": [ { "id": "F1SV18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV18" } ] } ], "protein_names": [ { "name": "Protein O-glucosyltransferase 3", "type": "synonym", "evidence": [ { "id": "F1SV18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV18/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Protein glucosyltransferase that catalyzes the transfer of glucose from UDP-glucose to a serine residue within the consensus sequence peptide C-X-N-T-X-G-S-F-X-C. Can also catalyze the transfer of xylose from UDP-xylose but less efficiently. Specifically targets extracellular EGF repeats of proteins such as NOTCH1, NOTCH3, FBN1, FBN2 and LTBP1. May regulate the transport of NOTCH1 and NOTCH3 to the plasma membrane and thereby the Notch signaling pathway.", "evidence": [ { "database": "UniProtKB", "id": "F1SV18", "url": "https://www.uniprot.org/uniprotkb/F1SV18#function" }, { "database": "UniProtKB", "id": "ARBA00045447", "url": "https://www.uniprot.org/uniprotkb/ARBA00045447#function" }, { "database": "UniProtKB", "id": "A0A5G2QVD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD9#function" }, { "database": "UniProtKB", "id": "A0A8W4FJY9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJY9#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV18", "url": "https://www.uniprot.org/uniprotkb/F1SV18" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POGLUT3", "url": "https://www.uniprot.org/uniprotkb/F1SV18", "locus": { "chromosome": "9", "start_pos": 36852560, "end_pos": 36879483, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015009", "url": "https://www.ensembl.org/id/ENSSSCG00000015009" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015009", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015009", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051091", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051091", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512977", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512977", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GITAWFF", "url": "https://omabrowser.org/oma/group/GITAWFF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV18", "url": "https://www.orthodb.org/?gene=F1SV18", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12203", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12203", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12203:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12203:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00630", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00630", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "58116", "url": "https://www.rhea-db.org/rhea/58116", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "62016", "url": "https://www.rhea-db.org/rhea/62016", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QVD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QVD9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJY9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV18", "url": "https://www.uniprot.org/uniprotkb/F1SV18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV18-1", "url": "https://www.uniprot.org/uniprotkb/F1SV18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRLPRAALLQLQLVLLVAAGPPEAPVSAPRSLVWGPGLRAGVVLPVRYFYLQAVSPEGHNLTRSPPGQTPFKVVIKSLSPKEIVRIHVPKPLDRNDGTFLMRYRMYETVNEGLKIEVLYGDEHVAQSPYILKGPVYHEYCECPEEDPQAWQRTLSCPTKEPQIAKDFASFPSINLQQMLNEIPRRFGEERGAIVHYTILNNHIYRRSLGKYTDFKMFSDEILLSLARKVLLPDVEFYVNLGDWPLEHRKVNETPGPLPIISWCGSLDSRDVILPTYDITHSTLEAMRGVTNDLLSIQGHTGPSWINKTEKAFFRGRDSREERLQLVQLSKENPQLLDAGITGYFFFQEKEKELGKAKLIGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQDSPYYEHFYMALKPWKHYVPIKRNLSDLLEKIEWAKEHDEEAKKIAKEGQLTARDLLQPHRLYCYYYRVLQKYAERQTSKPEIRDGMELVPQPDDSSSICQCHRKTPLREEL", "length": 508, "header": "tr|F1SV18-1|F1SV18_PIG Isoform 1 of Protein O-glucosyltransferase 3 OS=Sus scrofa OX=9823 GN=POGLUT3 PE=1 SV=3 CANONICAL=F1SV18-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QVD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SV18/entry#A0A5G2QVD9-1", "sequence": { "sequence": "IVELLIIIFLSGQTPFKVVIKSLSPKEIVRIHVPKPLDRNDGTFLMRYRMYETVNEGLKIEVLYGDEHVAQSPYILKGPVYHEYCECPEEDPQAWQRTLSCPTKEPQIAKDFASFPSINLQQMLNEIPRRFGEERGAIVHYTILNNHIYRRSLGKYTDFKMFSDEILLSLARKVLLPDVEFYVNLGDWPLEHRKVNETPGPLPIISWCGSLDSRDVILPTYDITHSTLEAMRGVTNDLLSIQGHTGPSWINKTEKAFFRGRDSREERLQLVQLSKENPQLLDAGITGYFFFQEKEKELGKAKLIGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQDSPYYEHFYMALKPWKHYVPIKRNLSDLLEKIEWAKEHDEEAKKIAKEGQLTARDLLQPHRLYCYYYRVLQKYAERQTSKPEIRDGMELVPQPDDSSSICQCHRKTPLREEL", "length": 452, "header": "tr|A0A5G2QVD9-1|F1SV18_PIG Computationally mapped isoform of Protein O-glucosyltransferase 3 OS=Sus scrofa OX=9823 GN=POGLUT3 PE=1 SV=1 CANONICAL=F1SV18-1" }, "locus": { "chromosome": "9", "start_pos": 36872026, "end_pos": 36858109, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000075247.1", "url": "https://www.ensembl.org/id/ENSSSCT00000075247.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068938.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068938.1" } ] } }, { "isoform_ac": "A0A8W4FJY9-1", "url": "https://www.uniprot.org/uniprotkb/F1SV18/entry#A0A8W4FJY9-1", "sequence": { "sequence": "PKEIVRIHVPKPLDRNDGTFLMRYRMYETVNEGLKIEVLYGDEHVAQSPYILKGPVYHEYCECPEEDPQAWQRTLSCPTKEPQIAKDFASFPSINLQQMLNEIPRRFGEERGAIVHYTILNNHIYRRSLGKYTDFKMFSDEILLSLARKVLLPDVEFYVNLGDWPLEHRKVNETPGPLPIISWCGSLDSRDVILPTYDITHSTLEAMRGVTNDLLSIQGHTGPSWINKTEKAFFRGRDSREERLQLVQLSKENPQLLDAGITGYFFFQEKEKELGKAKLIGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQDSPYYEHFYMALKPWKHYVPIKRNLSDLLEKIEWAKEHDEEAKKIAKEGQLTARDLLQPHRLYCYYYRVLQKYAERQTSKPEIRDGMELVPQPDDSSSICQCHRKTPLREEL", "length": 428, "header": "tr|A0A8W4FJY9-1|F1SV18_PIG Computationally mapped isoform of Protein O-glucosyltransferase 3 OS=Sus scrofa OX=9823 GN=POGLUT3 PE=1 SV=1 CANONICAL=F1SV18-1" }, "locus": { "chromosome": "9", "start_pos": 36871952, "end_pos": 36858109, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097214.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097214.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078625.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078625.1" } ] } }, { "isoform_ac": "F1SV18-1", "url": "https://www.uniprot.org/uniprotkb/F1SV18/entry#F1SV18-1", "sequence": { "sequence": "MRRLPRAALLQLQLVLLVAAGPPEAPVSAPRSLVWGPGLRAGVVLPVRYFYLQAVSPEGHNLTRSPPGQTPFKVVIKSLSPKEIVRIHVPKPLDRNDGTFLMRYRMYETVNEGLKIEVLYGDEHVAQSPYILKGPVYHEYCECPEEDPQAWQRTLSCPTKEPQIAKDFASFPSINLQQMLNEIPRRFGEERGAIVHYTILNNHIYRRSLGKYTDFKMFSDEILLSLARKVLLPDVEFYVNLGDWPLEHRKVNETPGPLPIISWCGSLDSRDVILPTYDITHSTLEAMRGVTNDLLSIQGHTGPSWINKTEKAFFRGRDSREERLQLVQLSKENPQLLDAGITGYFFFQEKEKELGKAKLIGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQDSPYYEHFYMALKPWKHYVPIKRNLSDLLEKIEWAKEHDEEAKKIAKEGQLTARDLLQPHRLYCYYYRVLQKYAERQTSKPEIRDGMELVPQPDDSSSICQCHRKTPLREEL", "length": 508, "header": "tr|F1SV18-1|F1SV18_PIG Isoform 1 of Protein O-glucosyltransferase 3 OS=Sus scrofa OX=9823 GN=POGLUT3 PE=1 SV=3 CANONICAL=F1SV18-1" }, "locus": { "chromosome": "9", "start_pos": 36879435, "end_pos": 36858109, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016373.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016373.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015933.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015933.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QVD9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QVD9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512977", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512977", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MGM6-1", "protein_name": "Protein O-glucosyltransferase 3", "gene_name": "POGLUT3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRRLPRARLLALQLALLVASGAPEAPLSAQRSLVWGPGLQAGVVLPVRYFYLQAVSPEGQNLTRSPPGQTLFRVVIKSLSPKELVRIHVPKPLDRNDGTFLMRYRMYETVSKGLKIEVLYGDEHVAQSPYILKGPVYHEYCECPEEDPQAWQKTLSCPDKEPQIEKDFASFPSINLQQMLIEVPKRFGDERGAIVHYTILNNNIYRRSLGKYTDFKMFSDEILLSLARKVLLPDLEFYVNLGDWPLEHRKVNETPGPLPIISWCGSLDSQDVILPTYDITHSTLEALRGVTNDLLSIQGNTGPSWINKTEKAFFRGRDSREERLQLVQLSKENPQLLDAGITGYFFFQEKEKELGKAKLIGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQDSPYYEHFYMALKPWKHYIPIKRNLSDLLEKVEWAKENDEEAKKIAKEGQLTARDLLQPHRLYCYYYTVLQKYAERQLSKPEVRDGMELVPQPGDSASLCQCHRKRPLRQEL", "length": 508 }, "evidence": [ { "id": "F1SV18", "url": "https://omabrowser.org/oma/group/F1SV18/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8V0XLF0-1", "protein_name": "Protein O-glucosyltransferase 3", "gene_name": "KDELC2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGSRGCALLLLLGAALPLLGSAAVSPERSLVWGPGLEAGLALPVRYFYIQAVSATGRNFSRSPPGRTQFKVVIKALSPKEVTRIYTPHPLDRNDGTFLMRYRMYGSVRKGLKIEILYGDKHVAQSPYILKGPVYHEYCDCPEEDPEIWQNVFSCPSQEPQITKDFISFPTIDLQRMFKEIPSKFSQTRGAIVHYTIVNNHIYRRSLGKYTDFKMFSDEMLLSLARKVHLPNVEFYLNVGDWPVEYRKVNDTPGPIPIISWCGSVDSRDIVLPTYDVTHSTLETLRGVTNDLLSIQGNTGPFWDNKTEQALFRGRDSREERLYLVKLSKENPELLDAGITGYFFFREKEKELGKVPLMGFFDFFKYKYQVNVDGTVAAYRFPYLLLGDSLVLKQDSQYYEHFYTVLKPWKHYVPVKRSLEDLLEKIKWAKENDEEAQKIAKEGQSVARELLQPHRLYCYYYKVLQKYAERQASEPEIRDGMELVPQPDDRDSVCSCHRKKPLREDL", "length": 505 }, "evidence": [ { "id": "F1SV18", "url": "https://omabrowser.org/oma/group/F1SV18/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G5E897-1", "protein_name": "Protein O-glucosyltransferase 3", "gene_name": "Poglut3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQALPLGLQLALLVAAGAGARVSAPRSLAWGPGLQAAAVLPVRYFFLQSVDSDGRNFTSSPPGQTQFKVVVKSLSPKELVRIYVPKPLDRNDGTFLVRYRMHETAHKGLKIEILHGSEHVAHSPYILKGPVYHEYCDCPEDDPQVWQETLSCPASEPQIEQDFVSFPSINLQQMLKEVPTRFGDERGAVVHYTILNNHIYRRSLGKYTDFKMFSDEILLSLARKVTLPDLEFYINLGDWPLEHRKVNDTPGPIPIISWCGSLDSRDIILPTYDVTHSTLEAMRGVTNDLLSVQGNTGPSWINKTEKAFFRGRDSREERLQLVLLSKENPQLLDAGITGYFFFQEKEKELGKAKLMGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQESPYYEHFYVALKPWKHYVPIKRNLGDLLEKVKWAKENDEEAKKIAKEGQLTARDLLQPPRLYCYYYRVLQKYAERQASKPMIRDGMELVPQPDDGTSICQCHRRRPEREEL", "length": 503 }, "evidence": [ { "id": "F1SV18", "url": "https://omabrowser.org/oma/group/F1SV18/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q566E5-1", "protein_name": "Protein O-glucosyltransferase 3", "gene_name": "Poglut3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLGVRRALLLPPLQLALLVAAGTGARVSAPRSLAWGPGLHADAVLPVRYFFLQSVDSDGRNFTSSPPGQTQFKVVVKSLSPKELVRIYVPKPLDRNDGTFLVRYRMHETVHEGLKIEILYGGEHVAQSPYILKGPVYHEYCDCPEDDPQAWQKTLSCPANEPQIEQDFISFPSINLQQMLKEVPKRFGDERGAIVHYTILNNHIYRRSLGKYTDFKMFSDEILLSLARKVTLPDLEFYINLGDWPLEHRKVNDTPGPIPIISWCGSLDSRDIILPTYDVTHSTLEAMRGVTNDLLSVQGNTGPSWINKTEKAFFRGRDSREERLQLVLLSKENPQLLDAGITGYFFFQEKEKELGKAKLMGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQESPYYEHFYVELRPWKHYVPIKRNLSDLLEKVKWAKENDEEAKRIAKEGQLTARDLLQPPRLYCYYYRVLQKYAERQVSKPMIRDGMERVPQPDDSTSVRQCHRKRPEREEL", "length": 508 }, "evidence": [ { "id": "F1SV18", "url": "https://omabrowser.org/oma/group/F1SV18/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7Z4H8-1", "protein_name": "Protein O-glucosyltransferase 3", "gene_name": "POGLUT3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRRLPRALLLQLRLALLVAAGAPEVLVSAPRSLVWGPGLQAAVVLPVRYFYLQAVNSEGQNLTRSPAGETPFKVVVKSLSPKELVRIHVPKPLDRNDGTFLMRYRMYETVDEGLKIEVLYGDEHVAQSPYILKGPVYHEYCECPEDPQAWQKTLSCPTKEPQIAKDFASFPSINLQQMLKEVPKRFGDERGAIVHYTILNNHVYRRSLGKYTDFKMFSDEILLSLTRKVLLPDLEFYVNLGDWPLEHRKVNGTPSPIPIISWCGSLDSRDVVLPTYDITHSMLEAMRGVTNDLLSIQGNTGPSWINKTERAFFRGRDSREERLQLVQLSKENPQLLDAGITGYFFFQEKEKELGKAKLMGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQDSPYYEHFYMALEPWKHYVPIKRNLSDLLEKVKWAKENDEEAKKIAKEGQLMARDLLQPHRLYCYYYQVLQKYAERQSSKPEVRDGMELVPQPEDSTAICQCHRKKPSREEL", "length": 507 }, "evidence": [ { "id": "F1SV18", "url": "https://omabrowser.org/oma/group/F1SV18/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endomembrane system", "id": "GO:0012505", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0012505", "evidence": [ { "database": "UniProtKB", "id": "F1SV18", "url": "https://www.uniprot.org/uniprotkb/F1SV18" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "glucosyltransferase activity", "id": "GO:0046527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046527", "evidence": [ { "database": "UniProtKB", "id": "F1SV18", "url": "https://www.uniprot.org/uniprotkb/F1SV18" } ], "pmid": "" }, { "name": "UDP-xylosyltransferase activity", "id": "GO:0035252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035252", "evidence": [ { "database": "UniProtKB", "id": "F1SV18", "url": "https://www.uniprot.org/uniprotkb/F1SV18" } ], "pmid": "" }, { "name": "UDP-glucosyltransferase activity", "id": "GO:0035251", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035251", "evidence": [ { "database": "UniProtKB", "id": "F1SV18", "url": "https://www.uniprot.org/uniprotkb/F1SV18" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein O-linked glycosylation via glucose", "id": "GO:0180059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0180059", "evidence": [ { "database": "UniProtKB", "id": "F1SV18", "url": "https://www.uniprot.org/uniprotkb/F1SV18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 61, "end_pos": 63, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "58116", "name": "", "equation": "L-seryl-[EGF-like domain protein] + UDP-alpha-D-glucose = 3-O-(beta-D-glucosyl)-L-seryl-[EGF-like domain protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "58116", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/58116" } ] }, { "id": "62016", "name": "", "equation": "L-seryl-[EGF-like domain protein] + UDP-alpha-D-xylose = 3-O-(beta-D-xylosyl)-L-seryl-[EGF-like domain protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "62016", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/62016" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV18" }, { "id": "SM00672", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00672" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl transferase CAP10", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 476, "start_aa": "Leu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00002CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00012MO", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G00013MO", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G00014MO", "type": "Glycosphingolipid", "subtype": "Arthro series" }, { "glytoucan_ac": "G00015MO", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G00024MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00025AJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00025MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00034WH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00038JC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00045DM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00049MO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00050MO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00056SP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00059MO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00060MO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00061MO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G00064MO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G00069MO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00070MO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00071MO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00072MO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00122QX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00141ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00152LK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00157WT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00209ZX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00227ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00252UK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00274WK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00282XO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00288QM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G00298LF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00333ZL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00336XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00370EI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00395FS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00402KT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00407UJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00459HM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00461ZN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00483IX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00506NQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00510MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00521FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00557UC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00572SI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00580XP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00595HP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00601UG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00610TG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00623OI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00644FU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00647RA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00667RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00673KJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00679VV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00688XN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G00696YZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00709ZM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00736XN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00761MZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00761OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00774OZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00786XQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00787AF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G00788HS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00802AJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00845KS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00849VB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00851XQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00866EV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G00899CT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00936LV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00969CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G00974QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00977CB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01019HS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01055IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01055WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01139KZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01144AC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01164GG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01179OJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01181PE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01191NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01200BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01208OM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01232PN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01237HZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01260KW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01269WV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01271OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01278CM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01281PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01284FH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01296LJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01329EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01356OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01356YS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01357PS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01364TQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01369KU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01383BR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01402AT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01406YA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01431VR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01449MW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01463ZT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01474RK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01485HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01513UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01536DI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01538EI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01578NU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01580PZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01599DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01629YL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01645SV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01650PH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01659IT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01659VO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01676BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01690DX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01708UF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01712EB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01714NT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01716PR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G01725MM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01742MR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01767JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01768OD", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G01772JF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01799XU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01820WV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01824ZO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G01864XR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01878VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01894QP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01927AO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01933LC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01954WK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G01958WI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G01987DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01999QR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02020RQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02026XF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02035MJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02038LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02045TO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02049RJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02065HZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02080UT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02131XU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02145PB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02146NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02149VR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02151KD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02162MZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02162RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02168MP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02175CF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02187VY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02188VP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02196YO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02259AO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02278OY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02332YO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02334IJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02363VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02374CE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02375DU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02402HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02429PO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02443FW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02456CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02463PA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02488CK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02497GP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02497RH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02509SJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02511KW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02519WN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02536XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02556BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02582KL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02599VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02600QJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02622JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02644GE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02657AK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02660UC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02691LI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G02727GF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G02776UX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02782UU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02784UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02809FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02813OU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02819MW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02825UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02862XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02885BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02891BL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02910KB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02913BN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G02913GI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02934OV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02938HM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02946WF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02963KR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G02986VV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03015NB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03057GB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03067VG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03074ZG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03081TH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03087RG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03098CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03105ES", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03106MF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03116ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03120VA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03144AG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03166CJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03237OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03243FN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03272BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03277YI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03286CY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03332JB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03333ZM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03361KC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03408WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03432RV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03457IA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03472XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03473OX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03479FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03487PR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03506YN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03525IQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03527VN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03530HJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03562FD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03564IA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03572II", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03577YH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03581TO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03593VH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03629LR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03668XO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03674DI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03678BK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03678VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03679EO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03700GP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03706BZ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G03728KZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03739GM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03756ZH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03767RW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03794CJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03795KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03805HR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03806TA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03819SO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03827BO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03828AM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G03829ED", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03830VF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03862DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03871KV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03872XE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03873KF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03888GC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03903BD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03907HM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G03919ED", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03951YI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G03954KJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03955RC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G03957WU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04002CA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04003YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04004CH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04015AP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04052HW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04062XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04084WX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04093XE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04100NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04111FM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04196SD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04203QS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04216XN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04230VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04256AW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04281RT", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G04291CU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04368AZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G04368OY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04417HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04422RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04433GV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G04435PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04436ET", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04445AU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04451KB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04462ZS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04479WW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04497XO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04537DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04542UN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G04543MP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04545VH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04550QS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04551HK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04557UT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04559RQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04563PI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04576PT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04596BJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04600CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04604GA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04610NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04610NL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04614QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04617VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04618ND", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04654VI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04663DE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04670CJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04676YO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04685DG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04700EY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04704LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04709FK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04715SK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G04742WT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04748KA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04752CX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04811WK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G04812DZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G04857UT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04877HJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04880KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04883CA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04884NP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04889DO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04908YS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04910RR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04913RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G04918QS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04922JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04947EI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04949TM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04966AC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G04991CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05014UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05015ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05022UB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05030FI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05095BA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05098DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05136BT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05139FR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05148UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05152XR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05153MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05161OY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05164TT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05167LP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05198VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05200HG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05212BT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05212WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05243OL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05260KF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05270TA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05286OM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05287IT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05297EK", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G05315FT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05318SS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05336WP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05337KJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05353EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05357CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05372FR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G05372US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05384WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05425EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05463IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05492XH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05499YV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05507UE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05516TP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05539AN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05550JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05561CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05574JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05596LB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05615BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05626DT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05636TF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05674AL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05687VB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05708IP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05722XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05777RN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05809DB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05821SL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05829TG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05858FK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05884WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05892MC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G05895IX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05914MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05920DM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05927ZE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G05938OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G05952XV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G05979DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05982NK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06000DZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06007BJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06021WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06028TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06031DD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06040NU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06055JA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06056XE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06058DL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06109OV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06115IS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06141RV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06148DR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06149HH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06185JX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06192YL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06202RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06203XQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06210XB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06225DQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06239NA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06303JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06334DC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06351IA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06353XM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06402RX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06409UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06445NF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06446VC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06511XS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06557IC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06577HE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06583IY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06607HP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06616KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06619UQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06631LJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06655AV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06663AZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06706PA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06722GU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06723CY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06764KN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06778YR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G06797BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06799HZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06809KV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G06850AE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06850UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06851NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06873PC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06881DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G06910HM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G06924NS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06971VR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07008GA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07045AZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07062RV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07064QI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07071RD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07075ZE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07112RY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07136WT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07137JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07166FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07187JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07194UG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07214II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07227QC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07227YD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07251EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07280YM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07291XL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07292RD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07297KV", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G07311EV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07322TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07339TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07348OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07360YN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07372NH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07442BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07452NH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07462XS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07467EB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07492HB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07494AF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07517TD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07518YL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07521PP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07522UW", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G07533UM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07538NX", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G07549AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07566AO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07609AY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07613EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07614GN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07614RZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07615UU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07622PC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07626IW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07627PD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07634AZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07641UW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07646VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07655BD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07675OH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07706PG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07714MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07727AE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07729WS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07729YZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G07741OQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07747UL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07761XR", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G07768GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07803AA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07822HH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07835SR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07843HL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07863BE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07879ZH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07895UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07902LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07903TD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07922PY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G07943WF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G07954EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07978HT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G07992YV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08023FY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08033RH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08089AE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08091PP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08143BZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08149EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08172WN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08192DD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08231LD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08275ZY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08277FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08344GX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08354GM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08380SA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08431YY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08436NI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08536AN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08540DD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08551GM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G08564RB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08578PP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08585ZI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08595SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08640KF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08648UJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G08649GN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08660ID", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G08662MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08672HQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08674CQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08711ZN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08719UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08723AU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G08732TG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08738TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08775RW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08785FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08795GE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08796XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08801NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08835TC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08851AT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08855PJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08856EZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G08861VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08870DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08879VK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G08885DJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G08921QM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08937BW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09004CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09016VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09023OT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09028HV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09035TO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09036PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09045NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09046VD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09054LY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09054UX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09057MT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09062JA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09074CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09091PI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09143NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09165XB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09183JD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09194JX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09199FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09216IK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09226GE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09242UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09245VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09255MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09302XT", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G09308YS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09333VN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09336GJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09383LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09397NL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09415JG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09454VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09465EV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09480BB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09493AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09506OB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09529HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09533NV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09552LA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09576SL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09583ED", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09598KD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09610VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09658RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09662MS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09675VB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09676KV", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G09702XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09712ZH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09731UU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09741DV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09743JV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09745MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09761PB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09787WB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09799UN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G09819VE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09846QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09858SO", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G09861HL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09921EA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09930HL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09947IM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G09962WA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G09966BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09983HE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G09988DU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G10034LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10074JB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10112QT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10137XF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10138RZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10150ZC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10158SF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10162QE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10166SK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10173JY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10191TO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10259IA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10276AE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10287JP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10305ZP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10306UR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10315IJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10331BD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10331BX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10339TL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10358PB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10376VB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10377CG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10397ST", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10400OD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10404GJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G10422IZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10430NG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10438JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10451QA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10461TS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10463RS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10470LU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10479NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10484MA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10488WF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10503MP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10513GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10528MR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10534ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10543DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10561QV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10588AZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10608BJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10636ME", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10667BL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10689ZT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10703UH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10712FZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G10727PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10735NG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10767WF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10783VN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G10788ZQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10791ES", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10794OA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10816XY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10818SM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10820LV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G10830KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10839JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10853AV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10853BW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10861EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10890WT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G10897SV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10905SW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10925HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10929MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10943MK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G10965GL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10970DV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G10974HJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G10977MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11035GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11051CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11106ST", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11109ZM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11118YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11161OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11163DF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11173HB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11175LY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11182SS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11260XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11260YM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11288PA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11301CP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11327SW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11353QQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11356UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11364SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11409DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11414RL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11417QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11427YY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11428LI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11429PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11452MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11473GW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11475AO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11485ID", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11501NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11510PY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G11524CG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11547CN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11552SE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11554VY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11569NG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11587LZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11632NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11636EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11719PU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11745KF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11749PD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11753YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11756GA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11757WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11785PK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11787AF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11833QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11840SC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11842GF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11852IZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G11858KN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11877SF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11879XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11881QR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11886AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11894VX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11915UT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11922GI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11923HZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11928TH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G11931VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11943BP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G11967GO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12008GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12014ZL", "type": "Glycosphingolipid", "subtype": "Arthro series" }, { "glytoucan_ac": "G12020FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12021WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12025NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12045LV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12059EB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12062TH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12069NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12076QW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G12126HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12132AZ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G12138DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12151DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12155KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12162GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12182VX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12195UC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12201XS", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G12237CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12262RK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12273JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12274ST", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12312QM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12314ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12317LD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12332SI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12362BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12364DQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12381AJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12393MQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12429VM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12440KU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12456QN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12458SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12460DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12460QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12472DC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12499UL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12507OZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12521ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12531OO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12539ND", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12557JV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12579EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12611EO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12611ZS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12615BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12615JD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12637NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12641WM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12687HO", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G12710KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12719IE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G12724ES", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12729CF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12770GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12777YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12848IK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12850MK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12876JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12876TR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12878ME", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12890EI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G12920XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12932IO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G12945UV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12951CM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G12956VH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12964YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12969XN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G12978JL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12984CP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12986LA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13002FS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13021JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13025HR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13034PC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13038AO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13040AD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13051TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13058JI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13059GA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13063VO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13121ZV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13149YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13170EP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13177TU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13189BF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13205UX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13224CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13225OZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13247RE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13257ZV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13258LA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13294EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13295LH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13312HH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13327LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13334VF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13338YP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13362BC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13367QQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13401SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13411GM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13441AW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13445VO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13455RE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13456TU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13477JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13492NR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13543IR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13558UT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13585VS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13630UH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13636IT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13670FR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13677FP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13697BC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13732OQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13741YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13745WN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13748BP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G13764JW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G13769XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13775EU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13776JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13782KB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13821ZP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13897SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13898TJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13910LY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G13912IG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G13923FW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13953AN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13961XZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G13975CX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13978AP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13998ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14029LK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14037HH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14070SB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14091MR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14101YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14116CO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14121NG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14127JG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14128FN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14139BU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14139DE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14149FY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14153YV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14159WA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14172AX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14222AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14231QH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14245HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14252XR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14295FH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14326YE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14330IC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14338VK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14360BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14368ED", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14394HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14430JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14464IB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14484CB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14484TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14514RY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14543IY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14588LJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14589ZB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14596QX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14617GC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14622KK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14632UN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14633CL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14636AG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14636TF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14637KE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14638TS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14662SX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14675MA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14682DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14694LT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14727QK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14767HC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14768JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14769CB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14775OL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14781ZZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14784NA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14787DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14815EY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14817EI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14825CD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14825JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14849PR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14853GY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14857YN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14870CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14876IZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G14879UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14885WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14948BQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14956YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14965WK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14969WO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14971YU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G14974EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G14994VQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G14995JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14996VV", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G15021LG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15059WI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15066MY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15068EX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15080IH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15082FI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15091HJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G15158NE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15177HV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15178DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15193UK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15203IQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G15204GO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15211GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15216HY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G15232BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15257LR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15259PO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15301IS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15302GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15336XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15349PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15393GI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15399CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15402YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15403KF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15403UN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15410NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15471NJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15490PV", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G15493RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15513ZS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15528IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15541SE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15548CA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G15571PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15573DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15577GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15591ES", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15597AB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15605KR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15640IF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15640PW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15658UQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15694HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15704AX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15709CQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15710ZS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15721UI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15727EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15736PY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15762QT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G15810CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15828ZC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15850HT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15868RK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15874WL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15876RF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G15880UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15923IB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15926EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15933JV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15934PK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G15947DE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15948XY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15963OJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15982ZG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G15998PL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16063EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16083MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16112BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16171JW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16182AN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16195MD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16207FW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16216TH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16247BY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16248NY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16255HD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16255WW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16265FN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16269RR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16274HY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16302TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16302WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16328WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16348WN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16356RY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16363CS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16409VA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16429YB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16438SA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16452YW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16473NN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16492FT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16495ZV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16496QP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16517GB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16541MU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16555DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16561MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16568BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16609AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16647VS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16673GG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16678EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16682LX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16684ZR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16691JE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16701GV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16708AQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16723SS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16730XN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16737DA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16744RC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16761OC", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G16766HB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16804NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16816TN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16818JN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16832RX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G16845HS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16849CB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16854OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16881JR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16882OK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16900UB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G16924DP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16938NB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G16973RB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16974EB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16978WO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G16982II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16999RL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17014SZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17021CS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17024KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17041CW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17067EZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17070GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17075TB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17077FL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17100OM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G17119OZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17124YW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17127JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17129OX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17133MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17139LF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17140YY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17143HG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17147FM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17179HJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17234QV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17238DO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17256NT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17259DV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17266KS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17330HJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17369OI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17399NA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17403EL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17405VF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17431VW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17450LT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17456OU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17458EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17468PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17471FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17472NN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17473XY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17480VD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17486KZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17486WU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17491OC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17506KG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17513EU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17520FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17530YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17539DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17557TG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17630DD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17654IH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17661PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17667RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17678SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17680DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17681PE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G17691DU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17706WH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17707JT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17707VT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17716HE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G17719WX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17728WW", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G17782JG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17787TV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17790QU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17805IT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G17844FX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17860DR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G17918JQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17920GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17929OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17931AG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17935CU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17940JF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G17940ZL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G17999QY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18007PN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18010HV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18011IN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18028VD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18037KL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18037TZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18039HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18059CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18062WN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G18062XZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18063QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18071XX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18104MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18181XX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G18221CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18232GI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18232WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18235OA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18238YG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18252JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18253ZI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18268KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18288MA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18315LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18318CV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18345QU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G18357AG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G18361EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18378DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18400RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18408VV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18414FL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18470LI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18475FR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18486BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18510JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18526RP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18528HV", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G18558MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18612LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18623WZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18625KA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18635IL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18635VH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18653TW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18666RM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18684WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18721GF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18749ON", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18759PN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18761HZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18775OL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18777XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18787WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18792RR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18798VA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18808LA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18809BK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18819TA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18865CZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18868DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18904JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18904WZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18913GA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18920NZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18921VT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G18933GR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G18945FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G18983UN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18993ZZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19009LN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G19017MP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19024QK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19045PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19083VU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19090UP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19126UL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19130FU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19131IL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19152KQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19220VM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19244DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19274UN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19275DZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19278LV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19284DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19290HP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19298OA", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G19316KQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19329YV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19333TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19336PT", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G19337HV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19340FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19353JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19373RT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19378MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19379NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19382QM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19387QD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19403SS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19466PG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19490AF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19490HJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19501PV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19502QN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19503UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19503WF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19505HB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19506NG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19515QR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19524AS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19525AM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19529BG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19543NY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G19548ZL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19557PF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19558OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19562WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19585OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19618SB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19620VP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19625CF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19640ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19648VR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19675BE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19734UA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19751QT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19776GU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19776TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19817EM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19842AM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19847WB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19857HY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19889PB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19889ZI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G19904TA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G19906TL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19926LY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G19927IA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19933EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19957JG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19962EA", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G19972QF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G19986NY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20007MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20009FG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20026EA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20044TD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20065XU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20072HK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20145VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20176SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20180GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20190ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20191HY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20193WD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20208VO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20256DO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20265RJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20267BN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20301WF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20318TT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20320OP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20326RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20329DG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20331IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20408VF", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G20415OQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20420WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20422YR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20457KL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20500JP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20515LB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20549ZT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20559QI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G20570WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20574UF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20578GS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20578UY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20582KJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20598MJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20619BD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20622NR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20632RN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20639SU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20661LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20704OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20744ED", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G20745XU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20751TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20784HR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20787KF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20816ZE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20818VS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20851AO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20866ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20907ZZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20922AM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20927GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20929TQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G20942TC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G20959TH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20959ZC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21028RE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21058TC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21065JQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21066IE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21066ZL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21067JW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21070MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21113AK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21118IB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21118TN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21130ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21133VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21139PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21161NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21164BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21209GV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21212AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21222YH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21224FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21228ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21236MD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21263MC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21269SH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21272DZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21288QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21289TX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21293AK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21295FZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21298OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21313XG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21352KD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21354HK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21362JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21375GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21375XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21377WO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21383AF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21401UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21427VY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21431WT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21446XC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21454XY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21485BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21486JX", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G21516MM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21518JT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21545ZW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21561XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21563EL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21570BS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21572FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21623DB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21651KX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21652BV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21700KV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21756PT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21769HJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21780FU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21793KI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21796XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21803JN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21804JP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21814SJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21816FF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21819WX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21856LC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G21870UY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21890FV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21905IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21911MQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G21920ZC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21938SG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G21947TG", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G21951WD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21959TJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21974VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21976IF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G21986FE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22003RS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22006BV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22019UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22031CK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22032IX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22051KW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22053ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22075QU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22106MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22166FJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22176ZE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22192GQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22213VM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22224FY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22224NX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22229BU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22244UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22251DB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22270QF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22277CS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22285MT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22291NN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22329KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22330NJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22353JW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22363RH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22387WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22402PS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22410UW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22418JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22444WD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22458ML", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22458ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22467AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22469MG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22471JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22473KM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22478ZB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22487TL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22490RY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22493WB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22519VV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22521BX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22534SZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22557DP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22558OD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22572ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22573UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22588DI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22607LZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22628YK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22638IW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22639OC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22647CJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22665UT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22677ED", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22689CV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22708NH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22709NM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22732DH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22732RT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22738HC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22749JK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22754NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22774YT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22776XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22784CD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22800MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22802LI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G22814CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22830WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22832ZP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22864WE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22875VT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G22880KN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G22883GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G22893MK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23034ZK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23052GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23060UX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23068LG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23069WI", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G23080TY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23114RX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23147YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23151LZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23154TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23197RR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23214KL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23219MR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23237BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23251MK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23259FL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23261ZT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23268NB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23289VI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23320JT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23331SO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23333KI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23340DP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23347CS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23365SP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23366YW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23395CJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23410GT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23416GB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23418QR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23483YA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23530HV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23534JU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23539GZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23575RW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23589NU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23596JQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23609VQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23613OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23619OV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23629ZI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23645YM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23651JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23674WQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23681XP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23708IA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23764HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23768QN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23778PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23778TK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23799PV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23799VJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G23803EM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23828LE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23841ON", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23866JN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23909UE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23910FD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23916HE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23919QQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G23952DE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23955MI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23966JI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23983FH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G23991OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G23997SS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24012NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24034CH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24038BC", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G24054SU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24085OV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24096IK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24108BY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24146KP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24147YR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24158WB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24160OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24181ZL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24183XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24199AR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24205BA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24221ZF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24242FT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24267OV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24274RK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24276RE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24325LU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24352FX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24381FI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24384AP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24418EH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24427EI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24435DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24443KL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24450YM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24499XE", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G24504JY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24521PI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G24526CF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24528SB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24532SS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24536MY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24546AY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24564AN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24578GW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24619EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24624WL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24628OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24631FW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24638PB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24658ID", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24663XE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24667KN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24673RP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24675SB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24693UW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24696QL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24710SR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G24743DR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24757TB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24767RJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24790LX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24817UV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24837XO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G24853EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24885YJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24896AG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24940NZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24953KB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G24957GS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G24961UY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G24988NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25000OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25039EK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25045TC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G25052RV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25138MK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25141CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25144YW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25155OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25178FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25184KQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25216QA", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G25228EL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25231DK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25268QT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25278OE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G25285RC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25286QK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25300PO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25302QS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25303QF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25315HI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25317DI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25341OG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25355GN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25361DH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25395JX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25400QW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25449MM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25456GG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25457JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25466EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25471IM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25507FN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25551XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25554YF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25576NO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25607IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25615DN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25617US", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25623VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25645CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25674WK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25675RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25695XW", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G25750FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25785LX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25795FR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25795QP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25796EC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G25815IN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25818RY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25846VM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25857PM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25859HN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25865NX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25873ET", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25889HA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25900WY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25938VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25940DW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G25943ZQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25944NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G25956VZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G25984EB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26021TP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26036PN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26039ES", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26047BG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26070RB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26072QU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26080VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26082WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26109XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26123AX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26141MG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26148PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26151WB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26156WV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26171WT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26179LE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26184ON", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26192RP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26199BG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26203DP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26237YH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26242OS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26262IF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26276HR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26304UF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26328EQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26364SD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G26375KY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26430ZR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26460NH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26471XA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26473JD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26493OD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26503PC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26563GL", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G26583BK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26602MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26634XL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26640RK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26644DY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26658IQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26658RH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26662SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26663JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26678XQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26688JC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26692TC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26697HL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26719SL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26740OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26768BK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26814KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26821XH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26875JA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26885EH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26890OC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G26899ZP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26904NW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26910SA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G26935KM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G26941NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26954BE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26973VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27006LO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27011EZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27014FJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27018TS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27026TE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27032ME", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27036VQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27085CO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27101JC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27164YI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27172ZA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27178LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27204KU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27216AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27229SZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27239WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27243GN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27244KP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27252PE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27253QP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27274RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27326UA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27338ID", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27345IC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27359DP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27385YM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G27386EE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27395KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27403GX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G27405XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27410UA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27412QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27431KG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G27441RA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27459RV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27476OM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27512ST", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27534XO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27535EB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27565SZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27597CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27602YV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27603YQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27620XW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27630DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27631HH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27633IM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27633IW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27669AF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27676JU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27688CW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27699QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27723TL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27755TN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27761LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27763WY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G27780SA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27813RT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27816PZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27896GN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G27919TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G27938KB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G27939BZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27950WB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28059ZR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28060IH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28061KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28062BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28067EM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28095OP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28114SX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28141KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28165JK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28207IC", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G28208MV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28214DB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28230YA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28240ZE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28247OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28261RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28269NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28273XW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28278YB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28303ZW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28320RB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G28331VY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28333CH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28359NZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28405CE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28424QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28434CJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28440QS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28477UY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28517VU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G28520DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28538TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28553AZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28566CQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28568HS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G28604UG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G28637OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28726IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28747EI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28762DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28800UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28814ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28853SM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28868PL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28868ZC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28887GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28913LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28921CD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28935BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28938BC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G28947UJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G28953NL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G28972VP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29011DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29011GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29014RU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29053OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29084XK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29090AY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G29107MV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29157QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29159YJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29183GB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29185GO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29213NK", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G29221AR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29230VB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G29247YS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29249WW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29266JN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29275CW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29276TP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G29298GZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29302NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29360WZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29369ZL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29398UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29404WA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29418MQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29434JL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29437VV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29450EP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29451DX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29466FI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29470MA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29483FZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29497RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29527VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29530DJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29531IU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29557RI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G29591PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29594FL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29638NX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29643GJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29644ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29645LT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G29657AG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29658JP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G29672UH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29680GI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29715QQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29747CH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29757BL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29777ZC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29800ED", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29803YD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29831MX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29835QQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29859KI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29900GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29900YC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29907JM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29918XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29923RP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29924NS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29934FG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29940RQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29941TA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29964CE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G29966WK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G29969UN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G29995OZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G29995RP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29997FV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30007FD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30011XT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30028KZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30106JO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30113XR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30142GT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30173NO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30187JM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30209GK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G30211NR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30216ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30249AE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30284MN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30299SS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30335ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30350VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30359NH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30396GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30409YH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30411HI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30434GV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30461ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30479HB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30499XP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30502RO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30515MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30531GO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30532XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30534BG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30567WW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30606LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30614ED", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30616LC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30622WV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30633DZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30648VY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30655IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30657NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30661NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30693UA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30711AD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30716NO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30725CV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30738AJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30764RR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30764XF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30775MJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30806FA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30816RB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30816RQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30834XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30837MK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30844TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30846UH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G30866MH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30891XB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30908FP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G30909LI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30910VV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G30925QW", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G30979ZT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30981SB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G30988VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G30998FW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31003XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31009XT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G31039KM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G31089XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31116GS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31164DZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31210MJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31260VK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31296LI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G31323MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31331VZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31334IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31341TO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G31360PH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31407FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31423NL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31428NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31430SZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G31432OQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31457FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31470NX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31515JW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31567WT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G31569EM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31571NW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31588UR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31602HM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31613TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31616UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31627XJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31651JD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31682GT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31703US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31713BP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31713XX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G31722WH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31734TP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31740OZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31760OO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31761VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31786PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31806HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G31818FE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31831UH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31865PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31870CX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31872TH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31890BE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31892BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31927XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31932VR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G31938TD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G31941HB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G31962YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31963AJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G31969AK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32000AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32048NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32061UE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32093IA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32108RV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32113QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32118KN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32142BT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32142XF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32165MO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32166DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32205XM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32208HU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32218QT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32225VS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32231NJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32241KY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32252UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32254QI", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G32257ZX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32265BZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32321PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32325OQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32337NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32340QV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32363KK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32391RG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32417JV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32452JU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32476MI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32505ZO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32526BV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32540JJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32566HO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32570CD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G32570WF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32582CM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32592HX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32600YA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32604DK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32623DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32625ZI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32639VU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32665EN", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G32679VL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32683MW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32685CP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32685NO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32698HD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32747TK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32755YS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32771NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32773JJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G32787BE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32801HX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32816HT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32819WD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32829CA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32851DU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32860ZZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G32867PR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32878AH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32912BE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32938PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32967PZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G32969VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G32971XA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32986TN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32988OE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33009DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33020YH", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G33033DC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33035WV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33037KD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33047PQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33057TO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33085GB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33112BU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33131BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33145GJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33170MV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33175GZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33178VU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33191NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33198NP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33213NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33224VN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33233SN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G33246GQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33255ZB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33259YG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33337AB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33337MW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33340GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33344QB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33347WY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33350YB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33355QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33357UE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33365ZD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33366UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33370UM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33382UZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33391ZV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33394ZE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33402AN", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G33454WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33466YT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33480TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33502HC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33503TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33516EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33519HI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33559RM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33564HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33569DD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33570YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33575EC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33597HV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33649VP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33660KT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33662YL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33666ME", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G33711VF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33723EK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33733IG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33734NL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33765XW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33769NR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33823OW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33831NM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33853OT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33854WS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33861ND", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33868CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33870PD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33874AV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G33879ZM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33880OZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33889GK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33910SX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33928CD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33940EI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G33963WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33966RW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33972EG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33981OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G33988QH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G33997GL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34030LQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34066OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34072OC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G34094KX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34135AU", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G34135GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34152JG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34155LO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34173EV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34177WW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34207FC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34211XO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34216YN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34283FZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34285LF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34287TM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34294BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34295NM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34313LI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34337NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34354EU", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G34355FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34357ML", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34358NJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34376NH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34409VD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34433ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34443LL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34473LL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34479GI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34487LD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34491AS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34496IR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34536XC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34547EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34553KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34561JO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34569VD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34570FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34581QG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34582AE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34594DF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G34598QV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34629XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34650PD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34663XR", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G34674RX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34683KF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G34696JS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34709TM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34716XJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34730WJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34736QE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34793HD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34795YW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34797BZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34827IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34868UA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34870YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34876YB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34878UL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G34886TG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G34915XM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34924DC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G34926IG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34941JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34993RG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G34995KD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35033DR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35035JZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35045UK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35061ZY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35075BF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35132AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35189HY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35204AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35205EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35218BT", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G35228ZS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35270RH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35275HF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35298RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35317BW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35348LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35350DS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35362TE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35363NM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35369ST", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35389ZR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35406BC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35408LA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35448LP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35459NB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35492RH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35520YO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35525BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35546TB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35562PU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35566SI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35580KB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35598VH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35601BV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35601RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35638MG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35638ZE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35690KO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35722GB", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G35727FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35728NL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35730FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35750OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35752ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35793BK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35827XH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35839XA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35879BG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35894PP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35904ZB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G35915AS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G35924IL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35951JD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35960LO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G35989CX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36043JE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36058QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36072FN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36085MF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36097NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36100LR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36160KT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36180TB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36182WO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36195LV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36234UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36263SU", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G36264SN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36281WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36286VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36305KH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36316QQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36324PW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36350OR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36352YB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36367UP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36368WM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36377WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36383ZJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36400GY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36414LJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G36419UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36431NE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36441GD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36444IU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36467MU", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G36476BA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36515FF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36535HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36547OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36569JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36579WK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36598HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36654UF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36660PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36660SM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36673GG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36691KB", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G36692ET", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36702YL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36716WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36723FO", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G36728FD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36780GT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36781UQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36808PJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G36825HL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36854DS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G36864YV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36870BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36882YW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36934GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36950DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36966OD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36970IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G36983AG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G36996YR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37043KH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37049NT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37056YM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37114HJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37117TJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37130TL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37148OL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37161YC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37184KW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37197CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37223OF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37234PE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37235TY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37246BZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37246GN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37256HT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37279GB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37329VY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37337KC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37368TD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37402WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37414OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37419DL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37466ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37467FA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37511RU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37539ZE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37552GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37563FN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37599MP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37602JF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37629LW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37651NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37681WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37709OU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37714BK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37716BB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37716UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37721LB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37736TM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37739VD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37748CT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37772BE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37774ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37781BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37805DA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37815LJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37830TX", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G37864KF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37867ZC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37879VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37917UZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37918TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37961TE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G37974GN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G37990JU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G37994GS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G37997SE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38006JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38006RV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38033QX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38045PX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38047HX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38062KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38124GV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38157AO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38163LH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38165VA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38184ED", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38198RF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38199RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38210ZD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38231NR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38249LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38251WF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38265KO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38277CG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38285SE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38292IJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38296WP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38325PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38330TG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38398IX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G38403LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38431XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38469KM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38472BQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38481GS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38482EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38552LX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38560FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38565XH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38570HW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G38576EM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38602GT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38606VR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38611JU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38624LQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38624YQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38643YP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38644LV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38673OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38695WE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38697BZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38710SX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G38745KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38747GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38766VC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38807DH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38814XM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G38828TE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38898VO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G38923RO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G38936WI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G38949DT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G38979OV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38985UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39011KA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39027IM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39069AT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39074KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39080VZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39133HC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39141IM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39188CA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39206EA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39280XN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39289DE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39320DU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39322TD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39325ES", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39326SA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39342PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39374MZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39376AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39426YT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39428LZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39441NS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39446HB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G39453HH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39473BV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39484WM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G39497XB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39504MC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39513CH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39544CS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39578VI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39603SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39631VK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39655AK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39662GZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39678KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39686QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39693LV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39711RF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39723JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39737XF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39741QR", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G39790MV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39794DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39799YU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39808HN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G39818NQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G39837NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39850EU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G39861AN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39874GI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39877DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39884NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39884QV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39909EZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39935DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39946YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39952AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39952EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39962PZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G39964XX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G39968UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39969GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39970RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39982LL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39993RL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40014XX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40016IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40027TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40028TR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40041RJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40044IU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40047MJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40053EL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40061SQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40069KL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40100VR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40103VO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40104OM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40125MP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40132BT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40152LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40155OZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40164WC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40183QN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40184OL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40201MZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40205MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40234LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40249UC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40263XO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40267KK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40279NS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40286QP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40306MD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40333LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40336JD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40389FN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40402KD", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G40415EL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40428BG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40458PO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40464VV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40472TS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40491DT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40491JE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40492MP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40502PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40503RB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40539WX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40559LK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40585SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40654PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40657ZV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40658FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40670TE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40684IN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40702HI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G40704LK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40723AK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40737EA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40761HE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40764VP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40789ML", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40793GY", "type": "Glycosphingolipid", "subtype": "Arthro series" }, { "glytoucan_ac": "G40856SD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40890RC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40894MP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40911RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40925ML", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G40933JL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G40955CS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40968SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40990LB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G40996VT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41059RW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41060WK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41063ME", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41068KF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41078PD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41082WI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41087SI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41091BW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41103JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41109NO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41114NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41117VL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41122XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41131AQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41145US", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41161SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41179DF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41181ZG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41187EG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41192XR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41195XL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41202OE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41202YP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41211IT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41235SU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41253CH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41265SA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41318VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41329FW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41340EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41366RG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41369GA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41392AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41402DP", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G41416MJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41429JQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41441JX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41445SH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41451DF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41469UO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41472HM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41473XU", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G41474PO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41496WC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41544XW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41559TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41567CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41569JZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41575IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41655FU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41671KD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41704PA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41709CA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41722LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41733ZK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41759HA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41760KJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41809LE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41821AK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41868HL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41869MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41870DO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41876BL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G41876QI", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G41883JI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41925UY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41939GY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G41939JF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41945RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41960WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41962VB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41966ZK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41974TM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G41992MM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G41994UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42031FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42111EW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42166HQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G42167FI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42169KP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42187XB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42188UZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42208LC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42256GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42257KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42274XB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42296CW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42300HO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42304ZX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42339FF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42368WD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42372JP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42414NX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42426DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42429RJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42435HX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42436GS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G42444AY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42471EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42471QL", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G42494BC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42553JB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42570XX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42588FS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42610YN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42664TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42676MU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42706QP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42727QA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42740WR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G42764EW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42772NB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42784QY", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G42794EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G42803PB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42804BC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42821SE", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G42837HU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42857LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42886BF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G42925XE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G42925ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42952ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42970NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42981GC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43008OB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43015ZG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43016YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43031YU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43040ZY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43042LE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43060WU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43084LS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43088TW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43088UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43105RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43110WG", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G43116LH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43123KY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43124SR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43130YE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43135VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43144DG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43145MG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43160NX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43166PG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43170RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43173HF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43174OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43194OW", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G43211QV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43224AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43224ZR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43245MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43248VC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43250BX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43275QV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43277KK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43300WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43327VF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43334PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43349GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43365XJ", "type": "Glycosphingolipid", "subtype": "Arthro series" }, { "glytoucan_ac": "G43387CH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43421FP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43453YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43495HR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43501VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43502TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43509TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43516IV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43571PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43578PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43613BP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43622SG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43625CC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43647BQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43648PG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43686JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43708DU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43709XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43722YD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43727KP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43745JV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43771NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43784EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43804GS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43810IL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43813LG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43818LO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43836ZB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43840SR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43841TA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G43872OD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43887JP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43888BM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43891JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G43896ZL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43925HI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43930QJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43939NQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43944UW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G43973KI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G43998BW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44008HZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44023AZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44029SF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44044BE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44045HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44049YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44110PQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44111WR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44113UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44129WJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44142AM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44145OW", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G44183LA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44183QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44206ID", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G44219AA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44224KM", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G44258ND", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44261QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44280TL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44310IT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44317WC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44319SG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44321EA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44324ML", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44362TS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44378RC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44414OJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44438VR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44452NG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44460RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44468LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44483CH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44526IB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44534UF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44540QB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44564LW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44579JX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44602KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44612JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44638SB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44643DB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44653LT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44685RK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44733WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44737QR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G44739HH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44792WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44797BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44802MC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44811LM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G44815FG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44821RV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44834GV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44843HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44850HT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44856HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44859BH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44875TU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44894DO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44922NG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44933AY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G44936HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G44936KU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G44943NL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44977YS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44989NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45026EP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45099QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45103LD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G45114GN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45118OA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45140IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45179WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45194OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45195EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45211RL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45215IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45238JI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45248NB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45275NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45278XL", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G45302KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45323ZF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45354TV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45392YH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45400XL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45433XK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45486PA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45491TQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45497OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45513VH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45522CT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45536SD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45561WU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45568AH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45570JA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45592PM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45611KQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G45614AE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G45615OW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45624LJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45629MQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45709QT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45714BQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G45728EK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45772UU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45774GE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45788JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45796AX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G45817SC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G45827GY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45844KY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45850CT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45855TU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G45964TO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46001MW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46022SX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46046HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46067UI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46071XO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46074DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46083NH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46120KJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46120VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46125KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46127ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46142XJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46167TE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46188YO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46239II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46239WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46248BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46249ME", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46271TS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46286SX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46290BF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46332MF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46347IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46360JU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46367IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46410GC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46421ZG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46432VC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46445LO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46449WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46461VY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46482HZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46510OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46541XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46569SP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46573GP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46582AF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46613JI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46627YI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46631TR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46635KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46641RE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46642UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46653EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46677TE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46699KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46712IX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46733KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46742VO", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G46770BH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46775JK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46785VD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46797GW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G46799LA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46816YG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46849DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46852YU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46868PH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46873LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46884IT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G46907AV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46925NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46929PG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G46933YN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G46962CL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47015HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47037FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47046CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47047YK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47073CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47093BJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47163SC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47166ZR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47190IR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47202ZJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47219QN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47220PE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47224BK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47255FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47272IV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47273NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47296EB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47312IG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47329OU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47333HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47336HE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47346BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47372UM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47410KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47419EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47437DS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47437ED", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47442DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47466ZF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47470TL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47474JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47504RX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47546BW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47573CE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47614ZH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47643RP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47694YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47716WA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47725UR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G47740OM", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G47765YE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47776ZA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47781GM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47809QP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47825JC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47841LL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47850FH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47863IJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47880JM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47920XU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47922TD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47928KI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47940GT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47954AY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47969LP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47970KN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G47976ZQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G47980RJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G47982SP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48052YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48059CD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48061MK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G48076AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48084WK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48115EL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48120JT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48120WX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48140EO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48154LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48169CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48193DD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48217QC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48233VF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48236RC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48257AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48285RM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48291UM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48318UI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48353MP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48394VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48400CZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48400DU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48414OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48415OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48441KG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48455YF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48478GC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48488UW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48532GF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48542TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48558GR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48560LJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48567YH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48577SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48606LC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48635LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48643VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48652QR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48657AV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48675IA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48699XJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48730FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48733JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48734JY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48736CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48739TL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48740SL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48756XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48766VR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G48802FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48811NO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48838EV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G48851WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48867AQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48890SH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48913GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48963AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48967YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48969HM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G48974JE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G48977MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48980HE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49041CO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49042YY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49046GT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49101QW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49117TS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49118ZT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49124LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49157OO", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G49181SW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49183WA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49211UN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49244LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49245BM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49250JY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49280NJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49289HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49299WO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49305ZE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49320XS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49325TM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49333DC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49333PZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49338RK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49349FS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49359UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49403QD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49404MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49413LL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49423BG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49449BQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49467ZI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G49488CS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49532VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49539WP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49540SV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49543JM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49574GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49587PY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49601UN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49614WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49615DO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49620LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49625UW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49641CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49646ZX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49663WW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49689OQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49691SV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49694WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49708ZB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49764YU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49789HD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49791FJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49800ZN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49809AU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49812DC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49813VF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49824JU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49859TR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G49860OE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49866JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49877ZY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49900MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49903WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49905OX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G49920VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49922XM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G49932TZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G49935PI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49961JQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49995LQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50000BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50026IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50033ZJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50083WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50085FY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50116PC", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G50123ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50127MZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50135FN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50138LF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50157XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50166FA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50172OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50182HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50185CM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50186QS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50186ZP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50195ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50200KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50221XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50248BL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50251EH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50252MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50277GE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50292TF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50300JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50302DD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50318MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50319NW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50321QR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50328JC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50331GM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50331RU", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G50336DT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50340QI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50345ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50439PO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50443RA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50460ME", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50483QX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50487YA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50504AR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50504QA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50517DR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50539ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50540JU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50571WR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50574XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50576GW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50598JV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50604GS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50606VA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50622EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50624KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50624UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50653UY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50674LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50692LL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50708OX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50709KW", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G50724SP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50727CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50733RG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G50737VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50750UF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50762GU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G50790RU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50840BB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G50847MW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50866KI", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G50870EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50882AV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50887TF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50888IQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G50889HK", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G50918DF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G50933ZE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G50950LE", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G50962LI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G50964FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50967SW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50977RZ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G50992EZ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G51010TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51014DP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G51022CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51045UG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51047RS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51077XN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51083UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51092SE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51119AC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51123DJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51129KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51132ID", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51136LJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51175LB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51197ZR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G51214CJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51216ZQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51231DL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51256CL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51256JC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51259RH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51264PM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51291FK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51294LX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51349EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51359TV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51396EF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51412PR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51418BY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51434VR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51444RO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51458PP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51465VH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51467DA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51514QQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51530FC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51615LM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51633NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51640ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51647UX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51661GQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51663HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51695BV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51699SI", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G51712ZZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51719TS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51723XH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51725SG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51744CI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51747MD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51762MG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51813EW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51852RL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51855ZY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G51865IU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51881BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51882OJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51894FQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51904VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51921JZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51926AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51932GA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51966MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G51979RL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G51984QE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G51985OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52011MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52038OW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52040ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52056QL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52060AP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52067GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52077LR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52134DC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52139HZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52148JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52160KJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52217MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52263GC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52284QB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52324RX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52331OF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52333FC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52337IZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52358FW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G52364HQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52370OE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52375TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52380FC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52388RL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52402OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52414WY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52475CU", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G52483QG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52486LX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52505EM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52509IJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52532CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52532IK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52546IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52551JW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52599ZE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G52685IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52697MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52713HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52715CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52725AC", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G52728VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52734GZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52736WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52747ZF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52763AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52773AW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52779ZS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52789LB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52792TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52833UW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G52900DK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52915NJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G52921KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52966FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52967NB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G52973JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52984PW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G52994CS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53013IT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53015ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53017GV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53035ID", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53054FX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53092UZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53094UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53140PB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53192UO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53197YA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53210KA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53218AI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53219UW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53221YL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53224UW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53231BQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53238US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53271TQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53315TP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53335TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53352VJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53353OW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53380AH", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G53407QF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53414BX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53425CZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53441BO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53448LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53456IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53470SL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53509WS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53523XH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53544LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53561SR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53569TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53574EG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53577TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53625EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53628LR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53629LP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53665CP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53702EK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53718KF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53727WI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G53738ES", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53743TV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53750GJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53809EF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53810QC", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G53811SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53812EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53872MQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53880PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53896OL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G53915RL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53923CR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53930XS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53937DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53938ZR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53950VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53964XP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G53967VU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G53969KM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53978FA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54020TT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54021WX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54027IQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54067DW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54089ZD", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G54092SK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54099FP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54100IS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G54149AQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54155ZJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54163AD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54181UH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54189IW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54192TL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54198XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54220RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54239DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54244EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54257VH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54267NT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54278ZZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54286RQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54305WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54312KX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54333GA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54353FA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54369RQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54380HB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54388ZL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54397HG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54409JS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54420BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54429MF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54434YJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54442GQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54457LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54461DN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G54495OW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54501JY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54511PJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G54525GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54525WT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54579OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54585VU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54590JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54604OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54631ER", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54631HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54636IC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54657OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54671CY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54675DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54679PS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54690LY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54709BF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54716JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54721WC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54733XO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54746NB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54748KL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54762FC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54763CE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54765IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54767LB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54771ZD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54774KV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54779BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54799DU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G54799FV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54828XA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G54833IG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54851PH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54867OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54884BX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G54886PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54920VX", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G54986YK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55026RI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55026YW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55028LV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55051FB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55051LE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55054OM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55057OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55067XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55076BX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55076JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55098MO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55104KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55116GG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55116QE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55135LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55147XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55153IW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55186PG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55205JA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55221PW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55231NA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55250UC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55263LJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55268IR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55273EV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55298KW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55331KX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55341SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55343NM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55373FB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55394UQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55410EG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55424JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55459IJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55468CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55486BW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55493MW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55507NB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55547HH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55556DU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55557NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55560AP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55561ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55568JR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55582YT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55586CM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55588GQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55601IV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55608CO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55611DM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55611EY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55615MV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55633AI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55659LZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55662WM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55674DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55699TS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55710II", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55727HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55730AF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55734FJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55737IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55739DE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55748LU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55763HW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55773QM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55777ZN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55791XL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55796HY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55807JY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55834UL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G55885HS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55908UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G55925YH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55929FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G55945YW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G55954SF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55967QW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55970WN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56001HY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56006ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56017EQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56059PK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56075VK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56103JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56133NW", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G56140AE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56149VT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56154BC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56180KG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56181LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56190ON", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56209QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56213BV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56236CP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56256NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56258AG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56262LH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56277VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56298XO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56310WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56317PC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56372FJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56375AH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56390QA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56393JI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56413FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56430MO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56452CV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56464AW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56478LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56516VH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56517XV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56519EN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56525EU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56526JU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56528XC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56547DQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56548QI", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G56590ZL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56608NS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56619UM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56621YQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56624SW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56630LC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56635GS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56643UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56660NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56676WG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56680YP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56688OU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56690FO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56737MI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56741TR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56769LC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56781ZQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56827MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56845GO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G56870IY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56879CD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56896RW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G56915DR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56923FN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56931MP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56933NO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56967CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56970JS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G56978EC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G56999DB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57025PP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G57089NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57100KZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57102SD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57137KP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G57195UD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57210SQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57215PV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57226RK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57243PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57274OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57333RX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57349AQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G57399QL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57426LR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57436AR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57441KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57460VY", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G57465BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57478AQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G57486OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57491AM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57515XH", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G57547PJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57548NB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G57557BP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57587GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57602RY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57603BX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57612BV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G57631EW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57644YG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57647HE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57656TH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57672GN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57676EM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57710SU", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G57733JI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57733ZF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G57736AH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G57797BA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57814YS", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G57829QI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57835II", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57839JN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57875CW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57920AK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G57931UF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58019RP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58042JX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58051DH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58108NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58113QB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58121OQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58124XI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58145IC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58192HE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58199AW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58210OS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58213XM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58216AM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58223WL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58237WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58253LI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58254CZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58255FK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58274PS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58283XP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58293WT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58301IC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58306WW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58329RP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58336YA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58342PV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58344DV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58344PL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58347AZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58372YP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58377JK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58385JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58397VY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58399HX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58452XH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58469MG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58472YY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58516AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58522OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58527II", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58540DT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58545MF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58552BU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58575YW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58576XD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58598ZJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58611OO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58615XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58618MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58654YT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58732VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58757RS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58758MJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58793RU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58797JF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58822SA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G58827PN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58885JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58887JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58896AZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58907RR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58930HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58937DH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58938QK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58943FQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G58945YG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G58947TQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G58966MB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58990QD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59047YP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59059LG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59065BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59065TK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59066UJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59069AO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G59121IT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59140UY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59147VR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59163SO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59213AG", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G59222MP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59239HU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59239WS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59240OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59254WN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59281RJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59303OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59321KG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59337YR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59351TP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G59381KD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59404RU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59419BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59419HU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59432OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59478IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59485OU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59491WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59508TM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59564NC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59577RA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59594RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59598NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59611UV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59637YC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59716ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59724US", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59735FS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59736KH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59754MT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59774SV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59789QX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59792FQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G59840HE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59852VB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59883ZT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59915KM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59924XR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G59948PS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59951QN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G59967VI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G59995RD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60013VR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G60014FA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60014MR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60033IX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60036PJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G60039WT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60067KH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60070NH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60071QR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60071VH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60090YA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60109PL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60111FZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60123HZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60125IW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60134ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60151XT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60168XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60180XJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60184IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60184UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60203MI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60215XR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60228TP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G60234WF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60236AJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60240YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60257UU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60273PS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60274EI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60276JD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60286NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60308MW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60364OC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60366UG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60472XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60474KY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60486XU", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G60492QF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60501QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60504JW", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G60504ZR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60525HJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60532TQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60539QY", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G60540HU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60576EH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60611WD", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G60618DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60620RA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60629OV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60636RG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60645OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60665OR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60672SD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60673PW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G60707IU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60716WG", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G60722SX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60731JP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60739BH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60755WU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60768RB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60771OS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G60800QP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60801QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60808UH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G60815QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60867VZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60939WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G60943VK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61004FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61028BR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61043KX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61045CU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61055FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61087VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61095SW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61121IE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61158IP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61168WC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61169KO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61178UR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61184RV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61193WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61197PN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61224OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61247KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61281VS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61287UQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61303HI", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G61305ZB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61316DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61328AC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61358CK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61366AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61386ZX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61399NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61404CI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61416CS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61421VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61431WM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61446AW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61484ZW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61520PS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61523RC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61524KN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61556JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61573NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61624LR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61659NQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61664CH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61665MY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61667CO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61681XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61686OO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61693MC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61701FD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61702AK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61710AG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61713UA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61718WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61721ZA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61734NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61752HI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61756VD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61776FU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61807WT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61814LX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61823NN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61849OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G61896ZX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61904ZU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61905WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61907DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61908AD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61917OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61930ZO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G61954XA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G61961BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G61966PH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61998UE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G62009AR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62011LB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62012RD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G62028SP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62056VT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G62060LC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62081QB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62081ZB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62082AD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62097SF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62121FH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62158SB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62180QZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62181UJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62191HL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62204FH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62206XK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62209UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62210PO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G62225YW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62232OG", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G62238LR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62247TQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62251CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62256FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62288XJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62300UR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62316TQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62323OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62354MC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62369YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62377BH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62415JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62421SJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62439BR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62460CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62462YC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62469NH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62493PW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62494VF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62505RR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62515CB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62522NE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62527EG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62545KN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62546OB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62554JH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62559BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62562IW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62566FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62571UK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G62578QX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62579QI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G62582RY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G62631WH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62635FG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62640NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62658XM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62663TM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62669XC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G62672CD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62719QO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62745YK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62759AF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62761YH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62776HF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G62785KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62801YJ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G62847TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G62870ZM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62926NR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G62933FW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G62955NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63001DW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63012FY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63014UY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63033FI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63034IM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63045MN", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G63053GR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63063JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63079ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63083GQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63085NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63110FF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63124QX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63135UF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63143SS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63165YN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63172FY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63200EC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63227BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63235JS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63238VS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63250DI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63272GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63282TI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63284EN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63296BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63299OR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63312WP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63327AP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63332HR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63338KU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63357SV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63367WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63389KA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63402KD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63412DQ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G63477YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63493WR", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G63496FG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63520EZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63521CI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63524HL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63539GC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63563UN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63569MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63570QO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63586XH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63607QJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63611ZF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63614KK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63621KM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63630KO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63661KP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63670YV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63672XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63675TT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63677TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63689CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63694JO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63728VN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63732JW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63768EQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63782BU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63813EJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63828DS", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G63828QT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63830BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63839XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63852VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63864WL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63873ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63883UO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G63954IW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G63977XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63978ZE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63981YU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G63992GH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G63998IX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64003EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64007NV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64010HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64011FV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64014BL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64018KD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64021SI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64050XD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64176BH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64183CB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64185VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64189GC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64193FB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64199VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64223CQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64227KZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64232TP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64245GE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64253RM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64256FG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64260NK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64271BN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64279JS", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G64289QQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64301WQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64315DN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64343PB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64386BR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64388ER", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64404PV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64407FC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64408ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64427XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64428DQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64433JO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64448AC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64463GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64500KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64501FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64506SD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64529AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64538MP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64547NU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64592DQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64593RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64615YP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64623CG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64623GC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64624XQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G64627MH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64642ML", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64646SW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64651FB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64665ER", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64665JS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64714RC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64725HA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64783LH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64784NL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64804DL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64812KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64829AO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64842QB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64854UO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64855FW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64858OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64869AU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64873JT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64885AH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G64919UI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G64943CI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G64968QT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65006QR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65010WF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65070LF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65085HC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65097BM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65108YC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65109OK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G65112QB", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G65124WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65138GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65147SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65150XT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65156XZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65165RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65166VR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65181DG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65192DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65194MM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65201PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65223RT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65236OQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65252JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65255ZQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65276XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65309UJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G65345NM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65365VP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65432SL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65434MQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65440VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65467NS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65524NS", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G65533MH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65536FS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65542KP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65560KB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65686FS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65690RR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65696SL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65716WE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65718MY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65741LB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65744QH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65746OX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G65756CN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G65882DG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65891UG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65898DT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G65980MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G65997OJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66005RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66008DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66037WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66066CB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66068XE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66080XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66120GK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66128JY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G66131WK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66140MH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66141KC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66143SD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66147FA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66150KC", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G66159UZ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G66161CZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66166SQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66168TG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66170NY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66176WC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66192KI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66210BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66215JQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66222TX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66266XM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G66272NF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66281XG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66284OG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66296ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66300WN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66306TN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66312KY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66361NS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66381UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66391HI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66409CQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66410BC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66427ZQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66428LH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66436YQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66463TJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66473XM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66480HI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66481II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66505KY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66521TP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G66542WL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66556SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66561TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66570CU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66582MS", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G66609VL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66624IK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66624KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66625HY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66630RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66644QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66645DV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66658TA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66673BG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66678DU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66683WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66685CE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66723QO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66729FK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66740MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66763JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66763RD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66781RS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66814LV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66826AV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66857VL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G66862TO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66889DJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66892DM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G66903UP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G66921SR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G66982KL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66986MB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66990QB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G67008OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67011VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67026KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67030AV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67036DM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67040UP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67053DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67054IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67061LT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67098NW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67137SS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67163FW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67229ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67280SN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67313FB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67314OV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67314XY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67318OS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67343HZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67353YY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67357EP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G67367KM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67383AR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67387BO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67400IQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67440KJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67447FX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67463LN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67489XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67517BF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67529BO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67533NN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67603AC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67609HJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67610CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67613XX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67622RU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G67648HS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67649WM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67659ZE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67694PM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67698UZ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G67710XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67714LU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67719JC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67734BQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67770PM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G67785RW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67803JQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67819AV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67821EI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67832JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67833SS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67865FF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67866OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67866QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67881UE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G67896FO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G67935HZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67941SR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G67951HH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68007FI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68018CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68019OD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68020FU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68026UI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68028NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68044QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68048NR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68049EI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68074FW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68105ZN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68110IF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68113KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68125YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68137PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68137QB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68138LS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68146EG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68149OD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68158GU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68158OV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68164OC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68179GF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68185NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68186WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68189PG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68208BX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68249NJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68257ZA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68315SO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68345XS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68371HY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68380GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68409IZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68409ZE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68415EV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68425FT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68494EQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68496PA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68502TK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68506FT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68514DJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68566QL", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G68584SZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68588WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68597CL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68640EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68640EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68651CL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68676IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68676WO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G68762AY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68789GU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68802NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68804MY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68844VO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68851QG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68853CN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68856EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68867HM", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G68867LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G68878AY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G68909IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68909KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68910MO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G68933BN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68935MX", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G68937DI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G68983XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69022RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69041DP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69053FP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69081WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69113UA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69123AM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69137UC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69140HM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69148PZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69158OT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69161BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69176ID", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G69187MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69187WD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69211UR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69213XM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69217QG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69220PX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69240GD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69248PQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69255QH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69265FU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69277LC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69308NJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69388BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69408FI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69412YT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69423HN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G69434BG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69444VS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69448NA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69464WX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69465YZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69468XJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69469KQ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G69476KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69508SI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69512CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69524MO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69534IP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69536IH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69536QI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69571DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69600CV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69650KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69658QM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69681RG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69704GD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69742YU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G69766TH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69783BP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69783RS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69825SU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69839KX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69843VA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69849LW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G69851ET", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69859RT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69877QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69881FC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G69893KP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69898FE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69915CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69916IP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69918WS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69920YC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69928MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G69983CO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G69997GH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70000DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70002UM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70023SA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70046IH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70048GJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70058HN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70061HE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70061HU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70065GE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70076OP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70093DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70106DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70115XG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70139CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70151NU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70192OC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70199PM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70213NR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70231JR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70245TG", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G70265CT", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G70270HA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70279EJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70283AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70307EN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70313VK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70314CC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70314DU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70320AB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70348BN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70355PK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70379IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70383OB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70418BK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70437IR", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G70445JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70453EL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70453QY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70458PC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70473VD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70480RO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70483AA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70502VR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70507DZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70541LO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70568QI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70573KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70626PU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70647TI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70655MK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70696OG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70699AI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70699LL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70709LC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70713JX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70748WO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70774LF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70794HX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G70811IE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70811UE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70814AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70833HG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70852XB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70866LY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70874WW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70887UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70888IM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70889AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70908UR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G70938LN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G70984WL", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G70995VB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G70995XZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71010LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71012YN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71023ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71025DD", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G71026KP", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G71027IW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71038MC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71082HA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71107PA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71116XO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71121AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71122GW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71137DN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71142DF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71153XE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71158TZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71213YU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71230WH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71252AI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71253GR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71264OU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71300IN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71309QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71337EE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71416GU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71440VW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71462KX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71469SQ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G71481EO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71484TR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G71485PH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71503SK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71529KC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71539PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71551HT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71565PB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71587NH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71602RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71609ZK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71614BZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71623LG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71651XN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71659FD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71684LJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71686XC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71687AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71688NS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71724NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71728MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71750KG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71791TJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71804ZL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71807XR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71820GM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G71821OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71840XB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G71849WE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71893QN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71924XX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71938CQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G71956IS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G71987VX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72002FC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72075LG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72078OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72079HR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72090UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72121PV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G72130YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72145IN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72154ZM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72163XD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72173RI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72182XS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72185VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72229WI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72234YU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72245LN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72292JH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72340SJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72344YZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72367JI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72383WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72395MI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72436TV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G72437KH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72494BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72506RN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72528ZZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72545NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72555NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72557NR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72561AG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G72565VD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G72571ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72590SG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72627IU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72639CY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72663HO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72672CX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72692DY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72701BV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72704UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72748AQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72761SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72778GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72806VZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72824HL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72825VD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72830DN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72840IQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72845XR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72846IJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72868NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72879DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72892PR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72894SZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72897KA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G72945HX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G72950LO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G72964RM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73001SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73028QW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73047LK", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G73086NS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73099DG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73113TF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73151VC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73162UU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73192TV", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G73209JX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73216SF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73241DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73245VI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73247EV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73251IT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73257RC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73261LB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73262RS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73288YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73292IW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73304RJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73313ZV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73348SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73349BT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73358GA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73381RY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73432VT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73451ZZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73488PA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73490NS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73501LG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73521HC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73524DT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73540DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73557XU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73566LT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73571EB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73578NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73587EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73597XM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73608AH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73611VT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73619PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73640JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73644IQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G73648AU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73654KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73703LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73717AG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73721BI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73746JO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73749NK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73754EW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G73769QI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73775MH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73782XI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73797MI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73814US", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73904AG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73909WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73910RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73936EU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73954OI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G73966WN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73983XW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G73999PV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74010TR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74052AH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74063YA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74081CV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74102VO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74113LG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74120HQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74133OX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74161MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74203JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74208YL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74229VN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74264VN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74267UG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74290DI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74317LJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74324PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74349ZV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74354KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74357UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74378JC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74386YM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74391YB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74394BJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74408VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74434IR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74463KT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74478YU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74488IL", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G74513JA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74537VZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74553FZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74556OQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74570BH", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G74573NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74602SY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74603QS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74609HP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74617OA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74621DY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74621TA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74624JM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74656GM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74656JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74665DT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74689YP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74709RD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74730ZY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74778UV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74779WZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74811WC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74823CH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74835NG", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G74842YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74861PZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74865UJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74882YF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74898MZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G74917XC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74933OP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74940OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74965IN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G74976VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G74976YZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G74989GW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75027WI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75030WH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75043SA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75045LQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75056PK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75057NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75060XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75062WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75088WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75091FG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75096PE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75128XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75129FO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75175WF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75188JR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75192NK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75242MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75242TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75253BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75253GH", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G75262ZI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75277CR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75306VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75330XI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75331WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75370BN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75372BZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75373PB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75402FG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75412XG", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G75425VL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75427AU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75437VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75450US", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75465YX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75483SB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75491MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75502AR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75516SB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75526ZI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75547TX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75567HL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75567OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75568XR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75596XQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75601KW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75635NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75660AY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75666MQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75675HT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75699GA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75734KX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75762RH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75765MM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75789AR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75791QY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75793XE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75804YG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75814EP", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G75819IL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75819UU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75826KS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G75855BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75865YY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75869XK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75873HH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75913XW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G75918UY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75934AG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75946PI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75955KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75965RY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75977QB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G75986DT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G75987RN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G76029TE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G76044NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76144DF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76177MU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76183GA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76188VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76195TH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76220DL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76234II", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G76252RZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76259TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76260HV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76305FA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76329AU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76344SX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76356HR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76375RB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76383CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76394YV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76398MP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76414XU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76425GZ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G76425LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76429CD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76429IR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76434UJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76439VL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76440EE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G76474BB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76481QC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76548SO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76562LW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76568UL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76574AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76596QC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76631VS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76638FT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76657BK", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G76677LJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76684IW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76685GV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76691AS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76692UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76716UK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76741XB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76742YJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76758TN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76796SB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76799QE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76800SO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G76811UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76817XI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76834NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76835SV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76840NL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76859VT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76864KF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G76866LJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G76873BP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76887JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76891AB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76894WU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76908ID", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76913LX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76949FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76969KY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G76973CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G76977EK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77019UJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77026KL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77029WB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77047WW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77048PE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77063PW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77067GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77070UX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77079RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77094JR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77099GK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77115OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77119GO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77135LY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77137FD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77145MR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77151OL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77159KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77165VD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77166AO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77186TD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77196BU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77233DH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77235BQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77276QV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77284KW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77285LE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77288BQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77339RV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77347FE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77370JU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77372RE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77377LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77379VC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77392WC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77395WU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77409CT", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G77415NC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77419BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77419LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77426UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77429RG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77442MO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77447CT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77451XV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77481VH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77495MG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77500AY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77506VJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77517VD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77539II", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77553BJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77554ZE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77580ZQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77593JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77608BK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77622ES", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77629XS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77632HJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77649JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77671SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77691XG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77700XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77709HK", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G77741RU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77744CZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77800FH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77811EB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G77815ZX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77833MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77841OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77849BI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G77877UD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77893MJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G77912NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77912UL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77942LK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77971RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77982VV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G77989NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G77993GH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77997HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78011LC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78072VO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G78074HX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78103ZD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78107NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78123CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78151IM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78152IS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78159CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78159ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78173GR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G78185ZA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78205EV", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G78208WN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78222TG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78225JI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78242EN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78263DG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78263IN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78288OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78312KD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78324SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78327FF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78344OG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78360SK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78367BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78367WA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78391TB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78418VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78430SF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78431CN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78447SQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78464AL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78481KH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78508BQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78531DR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78540IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78594WZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78596HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78603QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78612VQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78620TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78663EK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78687XY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78703MZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78712WU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78737HX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78800HY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78801YM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78806AD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78818SP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G78825DI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78859AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78864IW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G78869VK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78873LD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78884WZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G78885JL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78902VT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78929WE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78930TK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78933LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G78941GA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78955JC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G78986EI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79017AN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79028VB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79029KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79031AA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79035BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79040NI", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G79042KJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79045OC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79061XV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79069YJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79070AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79104LL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79107GH", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G79176OI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79205WJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79212MF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79231KU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79248YJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79249LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79249VN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79263DF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79269OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79277PF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79297GB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79328FZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79355HQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79359VA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79365EN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79375ZL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79382TI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79389NT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79393HI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79399GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79399YJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79401KU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79406XL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79407QS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79412YE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79413BC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79414JH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79420BT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79436QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79444AJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79448RG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79449CY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79468ZA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79481UP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79490IO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79501FW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79533UR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79536OW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G79541AM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79541IN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79544XM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79574FL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79577SJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79578VV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79585IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79588UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79605VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79614ZW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79645BX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79648LW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79661MW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79668RE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79682WT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79683KS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79694JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79704PQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79705OW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79713XX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79717OY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79725AK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79749VL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79751CC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79755IE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79756UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79776GW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79776YU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79778IP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79780HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79793CW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79828KF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G79847QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79865AB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79867YN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79868UA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79874WM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79904RJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79907QM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79930NT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79958YT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79982EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79982TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G79984HK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79989QO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G79990EW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80006OO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80016DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80016QG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80038GE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80061MS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80062GG", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G80085JU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80094CW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80119YZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80123RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80162ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80181KN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80191VM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80193TN", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G80206CK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80243CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80291PD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80303TB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80321KQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80324EI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80357KJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80360OF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80375GX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80393RT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80413JB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80459IY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80482UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80494PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80495XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80508RX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80517FW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80527WG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80537QG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80544IB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80554WA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80580OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80589WZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80610NX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80644NO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80739NE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G80753ZP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80812QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80829RZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80838HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80844IW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80845OV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80871ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80876BV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80876XE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80898BH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80902FY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G80908GL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80909VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80933MT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G80968NF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G80991KA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81004CR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81009ER", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81009UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81020JP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G81032PV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81081TF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81086UC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81088TW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81099CA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G81149TB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81153OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81154RY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81173KG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81182NV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81183YX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81188FE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81216DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81218UW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81220GC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81229DT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81237SW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G81237TH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81240GQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81243XR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81252MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81258JY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81271MF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81297HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81321XN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81337OK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81340AK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G81352TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81378YR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81408RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81450ZX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81452UT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81471NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81485FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81503YJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81521NA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81524AY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81527RS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81539VB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81542ST", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81549AE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81578NL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81596CU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81647RY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G81657MC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81675CF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81686CQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81697FM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81714CJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81719CZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81725PI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81740BZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81750QQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81761OR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81768ZB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G81777PB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81788HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81799DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81831HC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81831TO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81863AN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81865QV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81879LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81881OF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81910FL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81914EA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G81928IQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81935SW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81949SX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81977TF", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G81982KB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G81982NW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G81983KG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82094WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82098JY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82099YJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82106UN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82113BJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82117PD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82130IT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82156OL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82184VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82195SU", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G82197QV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82202JN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82211MN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82216FP", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G82226RX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82233EX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82252VY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82254GM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82257IP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82271PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82276DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82303RP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82306VJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82311QG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82325EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82338MG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82343BL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82348PP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82352ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82363GF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82374OR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82385GE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82403VJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82449QS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82454MN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G82461EN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82476PB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82478VG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82493BQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82504BQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82513QY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82535VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82551NV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82558IX", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G82560FU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82564LG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82599LI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82605DV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82638RK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82639DV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82643CK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82646SA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82662IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82663MJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82710YP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82727OW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82748UB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82763TV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82785KW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82815IT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G82831RR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82854PK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82858KU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G82869YD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G82893ZY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82894XQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82907DV", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G82960NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G82971XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83001FQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83025DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83041IT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83042PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83082ZQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83083BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83088QU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83097HR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83120FP", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G83134WQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83165LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83169EB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83173HC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83182VI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83205DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83209GQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83217RW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83217WV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83220EJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83261EH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83264OV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83276OP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83308JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83324EM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83404RQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83429VA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83513YI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83540EL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83540US", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83557NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83570DN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83579UI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83579XL", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G83645HN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83659OC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83663CO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83693ZR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83695DI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83699LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83711LU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83735EV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83761QN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83766VU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83768BW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83779VD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83797YZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83821PF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83829JQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83830MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83874MQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83894BX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G83906RF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G83914PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83916BT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83916HL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83950XD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83951YF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G83953WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83969IF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83981MV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G83991TU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84003DT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84026AP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84034JH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84040KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84050HR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84052PW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84081HV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84083SA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84087NK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84117HN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84144JO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84159UV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84167TP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84173YM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84174KV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84224TW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84235MH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84247EY", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G84273ZH", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G84275GF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84281ML", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84310QM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84311MV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84325DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84335EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84348MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84348OB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84374QH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84376KZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84388WF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84392IR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84392MH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84400BA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84406HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84429GD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84434SC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84439WZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84439ZI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84443BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84462PG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84471TB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84472GV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84492TT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84494ZD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84497MR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G84511FL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84519UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84526ST", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84556IB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84561IM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84562KF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84606TI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84618VV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84623DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84629NY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84645WY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84676AV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84707RO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84708MY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84717EN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84742FE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84763OL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84784TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84808RB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G84811VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84818FS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84824ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84849MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84853MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G84891DZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84899DL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G84912RV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84936AZ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G84955OO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G84985ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84996EP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85007NI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G85057ZC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85114LM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85122WX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85145IY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85154PS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85163FJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85163RD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85233RJ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G85237WB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85239OB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85244OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85250FL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85252SY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85262VX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85263VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85278ER", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85301FR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G85323FO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85350TW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G85366WG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85380WH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85383RY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85416ZI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85424PW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85476BF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85497AD", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G85508HP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85536AI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85561JV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85581WQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85613LZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85619IU", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85620YV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85628BP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85642JD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85646QT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85668PX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85720NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85724TD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85735KR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85735NR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85738ZK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85810DL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G85825HO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85826KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85861LW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85868ES", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G85903NG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85930OB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G85948PI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G85974BI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86002DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86002WM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86017PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86037OZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86060BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86082TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86094NY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86113SB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86139YL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86143FV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86152ZQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86155LT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86188RQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86192PU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86211GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86213NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86228ZZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86234TQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86236QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86237WM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86258CQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86262ZJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86282TW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86369LQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86378KH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86388AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86443CJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86445DK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86519UL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86524BE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86535WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86545YS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86546AY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86547OK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86562DX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86562TA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86567NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86575MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86585MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86592LR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86616IT", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G86640EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86669RK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86670TP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86673JA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86696JP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86700TF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86712SX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86723HT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86723LO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86746TS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86760OK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86761WD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86768IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86801QH", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86808SZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86811ZD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86817MI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86830MN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86860TF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86874EI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G86906WK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86950FO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G86950QP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G86951KU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G86958EY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87011AR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87044UH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87051PY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87056IR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87067LQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87091WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87119TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87128KJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87139BB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87139RR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87143GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87146EG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87156SE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87164WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87193FV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87211CO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87224SW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87225SH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87251UV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87256TY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87277DZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87288SC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87299FY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87351RF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87352TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87356FF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87366QT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87373RB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87381NE", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G87392ON", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87408KH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87418LR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87423KS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87433DT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87485AO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87494OF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87498KD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87516VM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87517GL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87564QI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87566RM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87573QL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87577UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87581MB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87584CF", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87608GX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87683IK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87685WT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87724OX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87727XV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87739PS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87743XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87757EV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G87764VO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87823LR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87830PS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87841AX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87859US", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87867IZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87925VK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87926VO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G87934MY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87950NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G87950XT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87959NL", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87978JW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G87989AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87997PG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88009HX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88010YW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88030QD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88068NL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88069OY", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G88122VF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88147IJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88170LK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88171EW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88175KE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88177YY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88188VJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88190EJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88192MM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88194BN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88202JO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88207NT", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G88224UD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88241WJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88292NP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88349NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88356HA", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G88363JW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88373TQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88374EZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88406BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88412DM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88426KH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88435BP", "type": "Glycosphingolipid", "subtype": "Mollu series" }, { "glytoucan_ac": "G88435GS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88467FH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88495YI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88499IC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88545DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88586HW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88587QY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88648CM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88681TU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88687PJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88692PI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88702ZJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88705MM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88716RM", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G88767NN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88783OQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88785AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88817DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88819GL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88822AB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G88822KL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88827RH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G88841HD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88866SH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G88875CC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88886BA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88892FQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G88917WY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G88922EN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88990JZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89021XE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89025TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89027OP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89034YM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89074AP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89076PQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89082SI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89089ML", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89090BS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89090WX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89132BO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89203PY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G89221ND", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89236VE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89237QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89249KR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89301PN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89324UD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89368FV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89393WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89396DO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89420DK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89427FI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89439DB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89449YK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89466VC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89467PI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89474SN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89487ES", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89488XC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89493SV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89518YP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89523CC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89532QJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89542YI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89575QC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89578RR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89604BS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89616LV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89623FN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89631EN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89659QV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89664NW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89689HB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89700LG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89726CP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89728KJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89736UW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89754LA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89812HR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89815YL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89825IM", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G89835OL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G89840WM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G89899RZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89929QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89951CG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89951NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89953YJ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89953YM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G89980PZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G89998UK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90018ER", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90033HQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90039FI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90078HC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90101BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90103BD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90108IF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90110ZK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90115NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90126ON", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90128OJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90194OL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90199DG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90205YZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90225TB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90235XB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90237JW", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90250TR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90270UN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90293ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90300MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90320DV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90337SJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90342EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90349EN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90355RK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90358HB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90367HM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90377OF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90394ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90397YE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90398RG", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90411BS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90420EH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90426ME", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90432GV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90473OY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90481XV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90490AC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90493BX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90502ZI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90503VR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90505NQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90506FJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90539LD", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G90562PB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90591UU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90598GO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90615MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90626QU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90627EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90628LX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90659UT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G90662WR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90670FN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90723FE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90726BS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90734LY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90775UZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90790YL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90805IW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90823ZH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90843QR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90865NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90878JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G90892ZK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90916LJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90950JD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90970US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90979OW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G90986VO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G90998OM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91011HK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91039UZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91067MD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91077TI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91082MW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91084QX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91102AK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91104FD", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91109NK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91151RV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91161YG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91181WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91182AF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91203WQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91230OO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91237TK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91240HI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91244GT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91258TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91283TY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91301ZY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91326YS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G91385MJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91404LJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91420LU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91441JF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91462QM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91500TH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91501UO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91508MU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91514VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91526RR", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91527BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91532KA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91535KQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91538AN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91545UA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91560NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91563UQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91580VP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91581VD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91586XY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91592HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91604EV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91625YD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91631HF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91641FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91649BT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91666HS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91689NU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91700SC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91706AL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91720CF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91730NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91733GZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91745FJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91765WL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91788TH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91789JU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91790DS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91801TT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91823FR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91837NN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91843GI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91844AP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91846TY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91885NF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91895FT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91896UO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G91906GT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G91945XP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91948FW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91959EZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G91992EF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92001FG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92009TQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92010QJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92011FT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92014UL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92026AN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92039VR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92047WH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92058BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92082JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92094GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92100BX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92175CL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G92221AV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92238TK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92258RH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92264CT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92279HJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92303LJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92315NV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92316KR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92329HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92400ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92429IK", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G92443DN", "type": "O-linked", "subtype": "O-fucose core, other" }, { "glytoucan_ac": "G92445MB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92457JM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92463PQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92495JT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92508HS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92529ST", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92547VI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92562WL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G92564XJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92577DB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G92606WC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92617BH", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92630VX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92646RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92649QH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92650AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92694VO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92697ZU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92711XR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92742GL", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92750QY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92776YS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92784KW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92793NI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92795CJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92803LC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92808JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92820EU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92830YQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92836JC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92889HN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G92912QK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92917CM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G92920MA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92939FF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G92940JX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92944JP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92965OP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93009SN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93041VZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93079VT", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93102UB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93146WS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93147EY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93173HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93174ZD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93210GW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93243AH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93265RE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93272ND", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93275KT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93275TB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93293OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93304BC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93353DR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93356UG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93393HC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93406FM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93457YH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93468NI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93472KA", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G93485ST", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G93509HU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93530WJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93536PN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93546EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93557ZJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93571AX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93594DD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93607OE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93641DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93658WO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93664OI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93678IP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93694YU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93697HU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93737AW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93737LO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93750WU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93752IE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G93760FW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93805MV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93805WZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93871LV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G93872XQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93899SO", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G93902TR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93920IR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G93921SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93977QO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94004DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94010JJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94050CO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94062MN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94086EF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94097TZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94103HD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94105GL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94110MD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94126RE", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94129DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94134XG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94135GM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94138KN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G94172VX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94173VC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94199RU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94208AD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94218PJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94235HZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94258SI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94263AT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G94278FQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94283CT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94289QJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94370IU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94374CC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94379JQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94393CX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94396BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94416HL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94431LX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G94435CR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94442CB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94458CS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94468TS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94476PG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94480CC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94498MI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94515TS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94526QN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94529WW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94542HF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94562LS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94576MQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94585EO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94627EK", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G94640TN", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G94641WA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94654MJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94678GU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94703CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94718VP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94755GP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94765MZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94768DB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94769SH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94799KL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94802UK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G94807YY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94822BD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94827XR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G94858ZC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94887MJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94888UJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94894XC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94896MY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94917JX", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G94940UD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G94946WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94953QI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G94976BB", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G94982RX", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G94992MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95000GB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95006TB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95014LS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95039NB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95051LD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95063JB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95074TZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95098GZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95101QA", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95115WR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95116WY", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95127YQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95137GE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95142MK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95162SK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95174UI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95188WB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95206HQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95233MF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95283OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95304WQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95310NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95312UR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95327BW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95341UA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95346ZL", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G95357RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95379DP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95424TQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95428DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95483TJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95487KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95523TV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95523YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95525DF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95569OK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95570RC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95577EQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95590MU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95609SS", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G95617LH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95618BP", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95676DI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95717BP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95746YS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95785PM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95811XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95831EN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95849GT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95873VF", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95882HX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G95902TY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95906KW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95910BJ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G95932VM", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G95954OW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G95969MO", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G95986XI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96010FG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96021CD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96074CQ", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96095CO", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G96099NX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96104VY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96116SQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96125BN", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96128GD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96131OD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96138GY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96141FI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96152MT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96202SN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96211DM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96214EI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96233QD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96242HI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96260GC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96267ZD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96332QQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96350WP", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96355UN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96364RV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96371MU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96400MT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96401FK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96409QX", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G96427WI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96428WC", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G96442BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96447DS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96494HC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96504QH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96522ZI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96538JO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96548CQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96558GF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96577AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96589RI", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96591PP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96596OC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96597OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96598ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96614JE", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96637FR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96645BH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96648KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96653ZN", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96679AF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96698DJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96699WJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96709CX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96717UK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96788KW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96834JC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96841VW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96852OV", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96853CY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96862HV", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G96873AZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96880NC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96938SZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G96991NM", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G96994CJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G96997ZB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97033IB", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97033ZO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97048GO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97067QW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97077OZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97078PU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97103MN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97110QS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97112CD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97114NU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97139LY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97155HP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97163JS", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97168TC", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97198YT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97222OW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97222TN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97276KK", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97310HO", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G97316TG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97323OQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G97323TT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97370EU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97397YQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97404MK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97434GB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97485LN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97503JI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97504JI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97536AL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97542CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97584MS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97584VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97612GY", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97612UN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97623TJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97626HJ", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G97647MZ", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G97655JD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97655UC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97680ZB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97681VL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97706PY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97710WA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97718OE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97727IC", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97732OH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97819AX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97820EY", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G97821VC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97837BD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97841KW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97848MR", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97862VK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97896NT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97898ZO", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97915SO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97917EY", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97920HT", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G97921YP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97932OH", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G97932SL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97943LS", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97950TK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97953NC", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G97957RW", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97965OG", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97975GF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G97992HW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98037ZG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98041GK", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98052MQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98095FX", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98104FF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98150TD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98156VW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98165IQ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G98166RS", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98173LG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98190NG", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G98195XI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98196VA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98213XU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98218JC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98226DD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98229SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98244EF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98251XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98278RD", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98313OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98342BD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98397EB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98419BR", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98431MA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98447LD", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98461EU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98465JN", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G98474IR", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G98487HH", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G98522GP", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98528DV", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98531AT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98531ST", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98537PP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98544DH", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98545QC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98565KW", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98569UQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98588WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98656QJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98667GG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98670RK", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98699UK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98699WA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98707CQ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98715JA", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98726UE", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98748OT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98750DB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98756WR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98765KG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98771VI", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98801DP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98848EU", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G98852IR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98880BO", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G98896JS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98900YM", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98901LP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98903KQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G98917TP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98918GZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98970IN", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G98973MQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98993DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98994FU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G98996UE", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99016SX", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99017PG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99019LG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99034UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99042JP", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G99053DY", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G99066TX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99072VW", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99137DJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99144NI", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99181PQ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99192EY", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G99196JZ", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99213KZ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99216BH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99218FR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99237NJ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99242KL", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99256VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99260NP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99283SL", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99287LH", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99289DI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99312NX", "type": "Glycosphingolipid", "subtype": "Globo series" }, { "glytoucan_ac": "G99315QZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99341BI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99350IC", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99359PI", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99368SZ", "type": "Glycosphingolipid", "subtype": "Muco series" }, { "glytoucan_ac": "G99373GG", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99398DL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99421OG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99423BR", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99431IB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99454GF", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99466VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99468TN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99481EP", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99506XN", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99509IG", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99524KA", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99560EQ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99571ZU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99572JF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99580PT", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99580SM", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99594LR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99608LK", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99627GJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99634KV", "type": "Glycosphingolipid", "subtype": "Isoglobo series" }, { "glytoucan_ac": "G99669ZF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99682TV", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99684EZ", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99705ZJ", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99708XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99723FZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99725YX", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99739TG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99789YU", "type": "Glycosphingolipid", "subtype": "Ganglio series" }, { "glytoucan_ac": "G99794YB", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99835YB", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99843PU", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99844LF", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99867KU", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99884YO", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99915NV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99923IT", "type": "Human Milk Oligosaccharide", "subtype": "Other" }, { "glytoucan_ac": "G99931LS", "type": "Glycosphingolipid", "subtype": "Lacto series" }, { "glytoucan_ac": "G99950OD", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99968QA", "type": "Glycosphingolipid", "subtype": "Neo-lacto series" }, { "glytoucan_ac": "G99976JK", "type": "Other", "subtype": "Other" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 252, "end_pos": 254 }, { "start_pos": 307, "end_pos": 309 }, { "start_pos": 420, "end_pos": 422 }, { "start_pos": 61, "end_pos": 63 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5S3-1", "uniprot_ac": "I3L5S3", "uniprot_id": "I3L5S3_PIG", "mass": { "chemical_mass": 41167.0, "monoisotopic_mass": 41167.0 }, "refseq": { "ac": "XP_005672187", "name": "cyclin-Y-like protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672187" }, "gene_names": [ { "name": "CCNYL1", "type": "recommended", "evidence": [ { "id": "I3L5S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5S3" } ] }, { "name": "CCNYL1", "type": "synonym", "evidence": [ { "id": "XP_005672187", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672187" } ] } ], "protein_names": [ { "name": "Cyclin Y like 1", "type": "synonym", "evidence": [ { "id": "I3L5S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5S3/entry#names_and_taxonomy" } ] }, { "name": "cyclin-Y-like protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005672187", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672187" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5S3", "url": "https://www.uniprot.org/uniprotkb/I3L5S3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCNYL1", "url": "https://www.uniprot.org/uniprotkb/I3L5S3", "locus": { "chromosome": "15", "start_pos": 110910887, "end_pos": 110874211, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024696", "url": "https://www.ensembl.org/id/ENSSSCG00000024696" } ] } } ], "crossref": [ { "id": "ENSSSCG00000024696", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024696", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd20540", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20540", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520645", "url": "https://www.ncbi.nlm.nih.gov/gene/100520645", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006671", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012399", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012399", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520645", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520645", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RWADAYQ", "url": "https://omabrowser.org/oma/group/RWADAYQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A5G2QXE9", "url": "https://www.orthodb.org/?gene=A0A5G2QXE9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3L5S3", "url": "https://www.orthodb.org/?gene=I3L5S3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14248", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14248", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00134", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00134", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27989", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27989", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005672187", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672187", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QXE9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QXE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5S3", "url": "https://www.uniprot.org/uniprotkb/I3L5S3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5S3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5S3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGNTLSCCLSPNASPKLGRRKGPVEPDYESEVCEAAAGDAVAVASAPAAVEPAELDYGAGEGHHLQHISDREMPEDLAFESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRTTIKCVTLAIYYHIKNRDADRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPSSVYAKYYFDLRSLADDNNVNFLFAPLSKERAQNLEAISRLCEDKYKDLCRAAMRRSFSADNFIGIQRSNAILS", "length": 363, "header": "tr|I3L5S3-1|I3L5S3_PIG Isoform 1 of Cyclin Y like 1 OS=Sus scrofa OX=9823 GN=CCNYL1 PE=3 SV=1 CANONICAL=I3L5S3-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QXE9-1", "url": "https://www.uniprot.org/uniprotkb/I3L5S3/entry#A0A5G2QXE9-1", "sequence": { "sequence": "MGNTLSCCLSPNASPKLGRRKGPVEPDYESEVCEAAAGDAVAVASAPAAVEPAELDYGAGEGHHLQHISDREMPEDLAFESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHCDLSNILPHKEQREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPSSVYAKYYFDLRSLADDNNVNFLFAPLSKERAQNLEAISRLCEDKYKDLCRAAMRRSFSADNFIGIQRSNAILS", "length": 312, "header": "tr|A0A5G2QXE9-1|I3L5S3_PIG Computationally mapped isoform of Cyclin Y like 1 OS=Sus scrofa OX=9823 GN=CCNYL1 PE=3 SV=1 CANONICAL=I3L5S3-1" }, "locus": { "chromosome": "15", "start_pos": 110908685, "end_pos": 110874333, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079627.2", "url": "https://www.ensembl.org/id/ENSSSCT00000079627.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066609.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066609.1" } ] } }, { "isoform_ac": "I3L5S3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5S3/entry#I3L5S3-1", "sequence": { "sequence": "MGNTLSCCLSPNASPKLGRRKGPVEPDYESEVCEAAAGDAVAVASAPAAVEPAELDYGAGEGHHLQHISDREMPEDLAFESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRTTIKCVTLAIYYHIKNRDADRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPSSVYAKYYFDLRSLADDNNVNFLFAPLSKERAQNLEAISRLCEDKYKDLCRAAMRRSFSADNFIGIQRSNAILS", "length": 363, "header": "tr|I3L5S3-1|I3L5S3_PIG Isoform 1 of Cyclin Y like 1 OS=Sus scrofa OX=9823 GN=CCNYL1 PE=3 SV=1 CANONICAL=I3L5S3-1" }, "locus": { "chromosome": "15", "start_pos": 110908685, "end_pos": 110874333, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031210.4", "url": "https://www.ensembl.org/id/ENSSSCT00000031210.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019373.1", "url": "https://www.ensembl.org/id/ENSSSCP00000019373.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QXE9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QXE9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520645", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520645", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LYE0-1", "protein_name": "Cyclin Y-like 1", "gene_name": "Ccnyl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEDLALESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRTTIKCVTLAIYYHIKNRDANRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKYKDLCRAAMRRSLSADNFIGIQRSNAILS", "length": 291 }, "evidence": [ { "id": "I3L5S3", "url": "https://omabrowser.org/oma/group/I3L5S3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3YUJ3-1", "protein_name": "Cyclin-Y-like protein 1", "gene_name": "Ccnyl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METRIRAAQLKGRGGAFPKLGRRAGPAEPDYESEVYEAAAGDAVAVAPAPAAAVEPAELDFGAGEGHHLQHISDREMPEDLALESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRTTIKCVTLAIYYHIKNRDANRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKYKDLCRAAMRRSLSADNFIGIQRSNAILS", "length": 367 }, "evidence": [ { "id": "I3L5S3", "url": "https://omabrowser.org/oma/group/I3L5S3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1BBI6-1", "protein_name": "Cyclin Y like 1", "gene_name": "CCNYL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGNTLTCCVSPSASPKLGRRAGPAEPDYESEVYEAAAGDAVAVAPAPATVEPTELDFGAGEGHHLQHISDREMPEDLALESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRTTIKCVTLAIYYHIKNRDANRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKYKDLCRVAVRRSFSADNFIGIQRSNAILS", "length": 363 }, "evidence": [ { "id": "I3L5S3", "url": "https://omabrowser.org/oma/group/I3L5S3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q08CI4-1", "protein_name": "Cyclin-Y-like protein 1", "gene_name": "ccnyl1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGNTVSCCVSPSGSPKLPRQVERLEDYQNNTDISDDTGPYLQHISDREVPDDLALESNPSDHARASTIFLSKSQTDVRDRRKSNHINHVSPGLLSKKYSSCSTIFIDDSTVSQPNLKSTIKCVTLAIYYHIKNRDSDRSLDIFDEKMHPLSREQVPDDYSRTDPEHKLIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAELDICPSNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADDNNLSFPLEPLSNERAQKLEAISRLCEDKYKDLSRVAMRRSFSADNLVGIRRSNAVLS", "length": 339 }, "evidence": [ { "id": "I3L5S3", "url": "https://omabrowser.org/oma/group/I3L5S3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8N7R7-1", "protein_name": "Cyclin-Y-like protein 1", "gene_name": "CCNYL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGNTLTCCVSPNASPKLGRRAGSAELYCASDIYEAVSGDAVAVAPAVVEPAELDFGEGEGHHLQHISDREMPEDLALESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRTTVKCVTLAIYYHIKNRDANRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKDLCRAAMRRSFSADNFIGIQRSKAILS", "length": 359 }, "evidence": [ { "id": "I3L5S3", "url": "https://omabrowser.org/oma/group/I3L5S3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "I3L5S3", "url": "https://www.uniprot.org/uniprotkb/I3L5S3" } ], "pmid": "" }, { "name": "cyclin-dependent protein serine/threonine kinase activator activity", "id": "GO:0061575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061575", "evidence": [ { "database": "UniProtKB", "id": "I3L5S3", "url": "https://www.uniprot.org/uniprotkb/I3L5S3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L5S3", "url": "https://www.uniprot.org/uniprotkb/I3L5S3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of canonical Wnt signaling pathway", "id": "GO:0060828", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060828", "evidence": [ { "database": "UniProtKB", "id": "I3L5S3", "url": "https://www.uniprot.org/uniprotkb/I3L5S3" } ], "pmid": "" }, { "name": "neurogenesis", "id": "GO:0022008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022008", "evidence": [ { "database": "UniProtKB", "id": "I3L5S3", "url": "https://www.uniprot.org/uniprotkb/I3L5S3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5S3" }, { "id": "SM00385", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00385" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cyclin-like", "eco_id": "ECO_0000259", "start_pos": 195, "end_pos": 280, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR82-1", "uniprot_ac": "F1SR82", "uniprot_id": "F1SR82_PIG", "mass": { "chemical_mass": 73933.0, "monoisotopic_mass": 73933.0 }, "refseq": {}, "gene_names": [ { "name": "GLB1L", "type": "recommended", "evidence": [ { "id": "F1SR82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR82" } ] } ], "protein_names": [ { "name": "beta-galactosidase", "type": "recommended", "evidence": [ { "id": "F1SR82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR82/entry#names_and_taxonomy" } ] }, { "name": "3.2.1.23", "type": "synonym", "evidence": [ { "id": "F1SR82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR82/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Cleaves beta-linked terminal galactosyl residues from gangliosides, glycoproteins, and glycosaminoglycans.", "evidence": [ { "database": "UniProtKB", "id": "F1SR82", "url": "https://www.uniprot.org/uniprotkb/F1SR82#function" }, { "database": "UniProtKB", "id": "ARBA00002691", "url": "https://www.uniprot.org/uniprotkb/ARBA00002691#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR82", "url": "https://www.uniprot.org/uniprotkb/F1SR82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GLB1L", "url": "https://www.uniprot.org/uniprotkb/F1SR82", "locus": { "chromosome": "15", "start_pos": 121271848, "end_pos": 121285091, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016213", "url": "https://www.ensembl.org/id/ENSSSCG00000016213" } ] } } ], "crossref": [ { "id": "F1SR82", "url": "https://alphafold.ebi.ac.uk/entry/F1SR82", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016213", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016213", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031330", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031330", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23421", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23421", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01301", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01301", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21317", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21317", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21467", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21467", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2022857", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022857", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2024101", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2024101", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9840310", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2QYD2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QYD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYD2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR82", "url": "https://www.uniprot.org/uniprotkb/F1SR82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR82-1", "url": "https://www.uniprot.org/uniprotkb/F1SR82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPEKPFCLPSLLLPLLTLLLPPQADTRSFVVDRNHDRFLLDGVPFRYVSGSLHYFRVPRVLWADRLFKMRMSGLNAIQFYVPWNYHEPEPGVYNFNGSRDLFAFLKEATLANLLVILRPGPYICAEWMGGLPAWLLRKPKIHLRTSDPDFLAAVDSWFKVLLPKIYPWLYHNGGNIISIQVENEYGSYRACDVKYMRHLAGLFRALLGDKILLFTTDGPEGLKCGSLQGLYTTVDFGPADNMTKIFALLRKYEPHGPLVNSEYYTGWLDYWGQNHSTRSVPAVTKGLEKMLELGASVNMYMFHGGTNFGYWNGADEKGRFLPITTSYDYDAPISEAGDPTPKFFAIRNVISKFQEIPLGPLPPPSPKMMLGPLTLQLDGDLLAFLDFLCPQGPIHSILPMTFEAVNQDRGFMLYRTHLTHTVSEPTQFWVPNNGVHDRAYVMVDGVFQGVLERNMEHNLFLMGKRGAKLDVLLENMGRLSFGSNSSDFKGLLEPPILGQTILTPWLMFPLKVDNLVKWWFPIQLLKTPHPQIPSGPTFYSTTFPVFDSGGDTFLYLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRPLLFPRGALNKITVLELENVPPQPQIQFLDRPILNSTLHKTYIYSLSTDIQGDSEPMELSGH", "length": 651, "header": "tr|F1SR82-1|F1SR82_PIG Isoform 1 of beta-galactosidase OS=Sus scrofa OX=9823 GN=GLB1L PE=3 SV=3 CANONICAL=F1SR82-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QYD2-1", "url": "https://www.uniprot.org/uniprotkb/F1SR82/entry#A0A5G2QYD2-1", "sequence": { "sequence": "MAPEKPFCLPSLLLPLLTLLLPPQADTRSFVVDRNHDRFLLDGVPFRYVSGSLHYFRVPRVLWADRLFKMRMSGLNAIQFYVPWNYHEPEPGVYNFNGSRDLFAFLKEATLANLLVILRPGPYICAEWMGGLPAWLLRKPKIHLRTSDPADNMTKIFALLRKYEPHGPLVNSEYYTGWLDYWGQNHSTRSVPAVTKGLEKMLELGASVNMYMFHGGTNFGYWNGADEKGRFLPITTSYDYDAPISEAGDPTPKFFAIRNVISKFQEIPLGPLPPPSPKMMLGPLTLQLDGDLLAFLDFLCPQGPIHSILPMTFEAVNQDRGFMLYRTHLTHTVSEPTQFWVPNNGVHDRAYVMVDGVFQGVLERNMEHNLFLMGKRGAKLDVLLENMGRLSFGSNSSDFKGLLEPPILGQTILTPWLMFPLKVDNLVKWWFPIQLLKTPHPQIPSGPTFYSTTFPVFDSGGDTFLYLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRPLLFPRGALNKITVLELENVPPQPQIQFLDRPILNSTLHKTYIYSLSTDIQGDSEPMELSGH", "length": 561, "header": "tr|A0A5G2QYD2-1|F1SR82_PIG Computationally mapped isoform of beta-galactosidase OS=Sus scrofa OX=9823 GN=GLB1L PE=3 SV=1 CANONICAL=F1SR82-1" }, "locus": { "chromosome": "15", "start_pos": 121283250, "end_pos": 121273918, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000084246.2", "url": "https://www.ensembl.org/id/ENSSSCT00000084246.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000069148.1", "url": "https://www.ensembl.org/id/ENSSSCP00000069148.1" } ] } }, { "isoform_ac": "F1SR82-1", "url": "https://www.uniprot.org/uniprotkb/F1SR82/entry#F1SR82-1", "sequence": { "sequence": "MAPEKPFCLPSLLLPLLTLLLPPQADTRSFVVDRNHDRFLLDGVPFRYVSGSLHYFRVPRVLWADRLFKMRMSGLNAIQFYVPWNYHEPEPGVYNFNGSRDLFAFLKEATLANLLVILRPGPYICAEWMGGLPAWLLRKPKIHLRTSDPDFLAAVDSWFKVLLPKIYPWLYHNGGNIISIQVENEYGSYRACDVKYMRHLAGLFRALLGDKILLFTTDGPEGLKCGSLQGLYTTVDFGPADNMTKIFALLRKYEPHGPLVNSEYYTGWLDYWGQNHSTRSVPAVTKGLEKMLELGASVNMYMFHGGTNFGYWNGADEKGRFLPITTSYDYDAPISEAGDPTPKFFAIRNVISKFQEIPLGPLPPPSPKMMLGPLTLQLDGDLLAFLDFLCPQGPIHSILPMTFEAVNQDRGFMLYRTHLTHTVSEPTQFWVPNNGVHDRAYVMVDGVFQGVLERNMEHNLFLMGKRGAKLDVLLENMGRLSFGSNSSDFKGLLEPPILGQTILTPWLMFPLKVDNLVKWWFPIQLLKTPHPQIPSGPTFYSTTFPVFDSGGDTFLYLPGWTKGQVWINGFNLGRYWTKRGPQQTLYVPRPLLFPRGALNKITVLELENVPPQPQIQFLDRPILNSTLHKTYIYSLSTDIQGDSEPMELSGH", "length": 651, "header": "tr|F1SR82-1|F1SR82_PIG Isoform 1 of beta-galactosidase OS=Sus scrofa OX=9823 GN=GLB1L PE=3 SV=3 CANONICAL=F1SR82-1" }, "locus": { "chromosome": "15", "start_pos": 121283250, "end_pos": 121273918, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017654.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017654.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017176.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017176.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QYD2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QYD2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2022857", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2022857", "resource": "Reactome", "description": "Keratan sulfate degradation" }, { "id": "R-SSC-2024101", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2024101", "resource": "Reactome", "description": "CS/DS degradation" }, { "id": "R-SSC-9840310", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840310", "resource": "Reactome", "description": "Glycosphingolipid catabolism" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "F1SR82", "url": "https://www.uniprot.org/uniprotkb/F1SR82" } ], "pmid": "" }, { "name": "galactose catabolic process", "id": "GO:0019388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019388", "evidence": [ { "database": "UniProtKB", "id": "F1SR82", "url": "https://www.uniprot.org/uniprotkb/F1SR82" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "beta-galactosidase activity", "id": "GO:0004565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004565", "evidence": [ { "database": "UniProtKB", "id": "F1SR82", "url": "https://www.uniprot.org/uniprotkb/F1SR82" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "vacuole", "id": "GO:0005773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005773", "evidence": [ { "database": "UniProtKB", "id": "F1SR82", "url": "https://www.uniprot.org/uniprotkb/F1SR82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 485, "end_pos": 487, "annotation": "n_glycosylation_sequon" }, { "start_pos": 624, "end_pos": 626, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-1605624", "name": "Beta-galactosidases hydrolyse mobilized GM1 to mobilized GM2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal membrane, lysosomal lumen", "input_participant_list": [ "R-ALL-1605715" ], "output_participant_list": [ "R-ALL-1605637" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1605624", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1605624" } ] }, { "id": "R-SSC-1606312", "name": "GLB1 hydrolyzes SapB/C:LacCer", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1606312", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1606312" } ] }, { "id": "R-SSC-1630306", "name": "GLB1 hydrolyses a glycosaminoglycan", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [ "R-ALL-2104997" ], "output_participant_list": [ "R-ALL-2104995" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1630306", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1630306" } ] }, { "id": "R-SSC-2090079", "name": "GLB1 hydrolyses linker chain(2)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [ "R-ALL-2090075" ], "output_participant_list": [ "R-ALL-2090063" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-2090079", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2090079" } ] }, { "id": "R-SSC-9840795", "name": "Beta-galactosidases hydrolyze GM2A:GA1 to GM2A:GA2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "lysosomal lumen", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9840795", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9840795" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1605637", "participant_name": "Gal [lysosomal lumen]", "crossref": [ { "id": "ZINC000000901155", "database": "ZINC", "url": "" }, { "id": "C00984", "database": "COMPOUND", "url": "" }, { "id": "HMDB0000143", "database": "HMDB Metabolite", "url": "" }, { "id": "4646", "database": "Guide to Pharmacology - Ligands", "url": "" }, { "id": "28061", "database": "ChEBI", "url": "" }, { "id": "G09546QO", "database": "GlyTouCan", "url": "" } ] }, { "participant_id": "R-ALL-1605715", "participant_name": "H2O [lysosomal lumen]", "crossref": [ { "id": "15377", "database": "ChEBI", "url": "" }, { "id": "8145132", "database": "PubChem Substance", "url": "" }, { "id": "C00001", "database": "COMPOUND", "url": "" }, { "id": "HMDB0002111", "database": "HMDB Metabolite", "url": "" } ] }, { "participant_id": "R-ALL-2090063", "participant_name": "D-xylose [lysosomal lumen]", "crossref": [ { "id": "C00181", "database": "COMPOUND", "url": "" }, { "id": "ZINC000018168715", "database": "ZINC", "url": "" }, { "id": "4724", "database": "Guide to Pharmacology - Ligands", "url": "" }, { "id": "15936", "database": "ChEBI", "url": "" }, { "id": "G01550VL", "database": "GlyTouCan", "url": "" } ] }, { "participant_id": "R-ALL-2090075", "participant_name": "linker chain(2) [lysosomal lumen]", "crossref": [ { "id": "154964", "database": "ChEBI", "url": "" }, { "id": "G87877ES", "database": "GlyTouCan", "url": "" } ] }, { "participant_id": "R-ALL-2104995", "participant_name": "GlcNAc(S)-Gal-GlcNAc(S)-Gal [lysosomal lumen]", "crossref": [ { "id": "ZINC000096085297", "database": "ZINC", "url": "" }, { "id": "63851", "database": "ChEBI", "url": "" }, { "id": "G80016QC", "database": "GlyTouCan", "url": "" }, { "id": "G06780", "database": "KEGG Glycan", "url": "" }, { "id": "ZINC000096085298", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-2104997", "participant_name": "Gal-GlcNAc(S)-Gal-GlcNAc(S)-Gal [lysosomal lumen]", "crossref": [ { "id": "63850", "database": "ChEBI", "url": "" }, { "id": "G13032", "database": "KEGG Glycan", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SR82-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 651, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SR82-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SR82" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SR82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR82" }, { "id": "PF21317", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21317" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta-galactosidase 1-like first all-beta", "eco_id": "ECO_0000259", "start_pos": 400, "end_pos": 512, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SR82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR82" }, { "id": "PF21467", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21467" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Beta-galactosidase galactose-binding", "eco_id": "ECO_0000259", "start_pos": 537, "end_pos": 594, "start_aa": "Pro", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SR82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR82" }, { "id": "PF01301", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01301" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycoside hydrolase 35 catalytic", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 353, "start_aa": "Phe", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 242, "end_pos": 244 }, { "start_pos": 275, "end_pos": 277 }, { "start_pos": 485, "end_pos": 487 }, { "start_pos": 624, "end_pos": 626 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5T8-1", "uniprot_ac": "F2Z5T8", "uniprot_id": "F2Z5T8_PIG", "mass": { "chemical_mass": 26032.0, "monoisotopic_mass": 26032.0 }, "refseq": { "ac": "NP_001027551", "name": "mps one binder kinase activator-like 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001027551" }, "gene_names": [ { "name": "MOBKL3", "type": "recommended", "evidence": [ { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" } ] }, { "name": "MOBKL3", "type": "synonym", "evidence": [ { "id": "NP_001027551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001027551" } ] }, { "name": "PREI3", "type": "synonym", "evidence": [ { "id": "NP_001027551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001027551" } ] } ], "protein_names": [ { "name": "MOB-like protein phocein", "type": "recommended", "evidence": [ { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8/entry#names_and_taxonomy" } ] }, { "name": "MOB1, Mps One Binder kinase activator-like 3", "type": "synonym", "evidence": [ { "id": "NP_001027551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001027551" } ] }, { "name": "Mob1 homolog 3", "type": "synonym", "evidence": [ { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8/entry#names_and_taxonomy" } ] }, { "name": "Mps one binder kinase activator-like 3", "type": "synonym", "evidence": [ { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8/entry#names_and_taxonomy" } ] }, { "name": "Preimplantation protein 3", "type": "synonym", "evidence": [ { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8/entry#names_and_taxonomy" } ] }, { "name": "mps one binder kinase activator-like 3", "type": "synonym", "evidence": [ { "id": "NP_001027551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001027551" } ] }, { "name": "phocein, Mob-like protein", "type": "synonym", "evidence": [ { "id": "NP_001027551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001027551" } ] }, { "name": "preimplantation protein 3", "type": "synonym", "evidence": [ { "id": "NP_001027551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001027551" } ] } ], "function": [ { "annotation": "Part of the striatin-interacting phosphatase and kinase (STRIPAK) complexes. STRIPAK complexes have critical roles in protein (de)phosphorylation and are regulators of multiple signaling pathways including Hippo, MAPK, nuclear receptor and cytoskeleton remodeling. Different types of STRIPAK complexes are involved in a variety of biological processes such as cell growth, differentiation, apoptosis, metabolism and immune regulation.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T8", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8#function" }, { "database": "UniProtKB", "id": "ARBA00044741", "url": "https://www.uniprot.org/uniprotkb/ARBA00044741#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5T8", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MOBKL3", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8", "locus": { "chromosome": "15", "start_pos": 101420447, "end_pos": 101390917, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016079", "url": "https://www.ensembl.org/id/ENSSSCG00000016079" } ] } } ], "crossref": [ { "id": "F2Z5T8", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5T8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016079", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016079", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "613127", "url": "https://www.ncbi.nlm.nih.gov/gene/613127", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036703", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036703", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:613127", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:613127", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ATCTQMT", "url": "https://omabrowser.org/oma/group/ATCTQMT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5T8", "url": "https://www.orthodb.org/?gene=F2Z5T8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001027551", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001027551", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2QZR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2QZR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5T8", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5T8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA", "length": 225, "header": "tr|F2Z5T8-1|F2Z5T8_PIG Isoform 1 of MOB-like protein phocein OS=Sus scrofa OX=9823 GN=MOBKL3 PE=1 SV=2 CANONICAL=F2Z5T8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2QZR9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8/entry#A0A5G2QZR9-1", "sequence": { "sequence": "MVMAEGTAVLRRNRPGTKAQYIQQNIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA", "length": 204, "header": "tr|A0A5G2QZR9-1|F2Z5T8_PIG Computationally mapped isoform of MOB-like protein phocein OS=Sus scrofa OX=9823 GN=MOBKL3 PE=1 SV=1 CANONICAL=F2Z5T8-1" }, "locus": { "chromosome": "15", "start_pos": 101418512, "end_pos": 101390928, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000091393.2", "url": "https://www.ensembl.org/id/ENSSSCT00000091393.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063745.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063745.1" } ] } }, { "isoform_ac": "F2Z5T8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8/entry#F2Z5T8-1", "sequence": { "sequence": "MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA", "length": 225, "header": "tr|F2Z5T8-1|F2Z5T8_PIG Isoform 1 of MOB-like protein phocein OS=Sus scrofa OX=9823 GN=MOBKL3 PE=1 SV=2 CANONICAL=F2Z5T8-1" }, "locus": { "chromosome": "15", "start_pos": 101418512, "end_pos": 101390928, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017507.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017507.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017035.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017035.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2QZR9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:613127", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:613127", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q6PEB6-1", "protein_name": "MOB-like protein phocein", "gene_name": "Mob4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA", "length": 225 }, "evidence": [ { "id": "F2Z5T8", "url": "https://omabrowser.org/oma/group/F2Z5T8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7K0E3-1", "protein_name": "MOB kinase activator-like 4", "gene_name": "Mob4", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MKMADGSTILRRNRPGTKSKDFCRWPDEPLEEMDSTLAVQQYIQQLIKRDPSNVELILTMPEAQDEGVWKYEHLRQFCMELNGLAVRLQKECSPSTCTQMTATDQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVTKLGSVCRRVYRIFSHAYFHHRRIFDEFEAETYLCHRFTHFVTKYNLMSKENLIVPINVGENAAPGESEA", "length": 223 }, "evidence": [ { "id": "F2Z5T8", "url": "https://omabrowser.org/oma/group/F2Z5T8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9QYW3-1", "protein_name": "MOB-like protein phocein", "gene_name": "Mob4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA", "length": 225 }, "evidence": [ { "id": "F2Z5T8", "url": "https://omabrowser.org/oma/group/F2Z5T8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9Y3A3-1", "protein_name": "MOB-like protein phocein", "gene_name": "MOB4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA", "length": 225 }, "evidence": [ { "id": "F2Z5T8", "url": "https://omabrowser.org/oma/group/F2Z5T8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T8", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T8", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T8", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" } ], "pmid": "" }, { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T8", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" } ], "pmid": "" }, { "name": "Golgi cisterna membrane", "id": "GO:0032580", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032580", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T8", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5T8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 225, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5T8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5T8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A5G2QZR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9#function" }, { "id": "A0A5G2QZR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 148, "amino_acid": "Ile", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 148, "end_pos": 148, "start_aa": "Ile", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QZR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9#function" }, { "id": "A0A5G2QZR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 153, "amino_acid": "Val", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 153, "end_pos": 153, "start_aa": "Val", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8#function" }, { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 169, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 169, "end_pos": 169, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8#function" }, { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 174, "amino_acid": "His", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 174, "end_pos": 174, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QZR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9#function" }, { "id": "A0A5G2QZR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 71, "amino_acid": "Tyr", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 71, "end_pos": 71, "start_aa": "Tyr", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A5G2QZR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9#function" }, { "id": "A0A5G2QZR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A5G2QZR9" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 76, "amino_acid": "Gln", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 76, "end_pos": 76, "start_aa": "Gln", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8#function" }, { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 92, "amino_acid": "Cys", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 92, "end_pos": 92, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8#function" }, { "id": "F2Z5T8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T8" }, { "id": "PIRSR605301-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605301-1" } ], "binding_site_uniprot": 97, "amino_acid": "Cys", "chebi_lig_id": "CHEBI_29105", "ligand": "Zn(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 97, "end_pos": 97, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 183, "end_pos": 185 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L715-1", "uniprot_ac": "I3L715", "uniprot_id": "I3L715_PIG", "mass": { "chemical_mass": 102872.0, "monoisotopic_mass": 102872.0 }, "refseq": { "ac": "XP_020952030", "name": "tubulin polyglutamylase TTLL7 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952030" }, "gene_names": [ { "name": "TTLL7", "type": "recommended", "evidence": [ { "id": "I3L715", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ] }, { "name": "TTLL7", "type": "synonym", "evidence": [ { "id": "XP_020952030", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952030" } ] } ], "protein_names": [ { "name": "Tubulin tyrosine ligase like 7", "type": "synonym", "evidence": [ { "id": "I3L715", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L715/entry#names_and_taxonomy" } ] }, { "name": "tubulin polyglutamylase TTLL7 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020952030", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952030" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TTLL7", "url": "https://www.uniprot.org/uniprotkb/I3L715", "locus": { "chromosome": "6", "start_pos": 129867887, "end_pos": 129708374, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003760", "url": "https://www.ensembl.org/id/ENSSSCG00000003760" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003760", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003760", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522876", "url": "https://www.ncbi.nlm.nih.gov/gene/100522876", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004344", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004344", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522876", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522876", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L715", "url": "https://www.orthodb.org/?gene=I3L715", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12241", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12241", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12241:SF147", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12241:SF147", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03133", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03133", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8955332", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8955332", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020952030", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020952030", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2R037", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R037", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R037-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R037-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L715-1", "url": "https://www.uniprot.org/uniprotkb/I3L715-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LG58", "url": "https://www.uniprot.org/uniprotkb/I3LG58", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LG58-1", "url": "https://www.uniprot.org/uniprotkb/I3LG58-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSLPQERVIQGPSPLDLNTELPYQNTMKRKVRKKKKKGTITANVAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKIAELQNYQRINHFPGMGEICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQFQNYMKELKKKRKQKTFIVKPANGAMGHGISLIRNGDKLPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKIFLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYSVNKHNEHFERDETENKGSKRSIKWFTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLGFDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKKGVLLNALKLLNIRTSDKRRNLAKQKAEAQRRLYGQNSIKRLLPGSSDWEQQRHQLERRKEELKERLAQVRKQISKEEHENRHMGNYRRIYPPEDKTLLEKYENLLAVAFQTFLSGRAASFQRELNNPLKKMKEEDILDLLEQCEIDDEKLMGKTAKPRGLKPLSSMPESSEMMKRQKYYSSDSSYGSSSSSSESEDNGKEEYQNKKREKQVTYNLKQSNHYKLIQQSSSIRRSVSCPRSISSQSPSSVDNRPFSAQQMISASRPTSGSRSHSLNRASSYTRHMPHSNDASSTSSPMCESLRQLRTKEQEDDLTSQTLFVLKDMKIRFPGKSDAESLLLIEDIIDNWKYHKTKVASYWLIKLDSVKQRKVLDIVKTSIRTVLPRIWKVPDVEEVNLYRIFNRVFNRLLWSHGQGLWNCFCDSGSSWESIFSKSPEVVTPLQLQCCQRLVELCKQCLLVVYKYAADSRGSLSGIGTDWGNSRYLLPGSTQFFLRTPTYNLKYSSPGMARSNVLFTSRYGHL", "length": 887, "header": "tr|I3L715-1|I3L715_PIG Isoform 1 of Tubulin tyrosine ligase like 7 OS=Sus scrofa OX=9823 GN=TTLL7 PE=3 SV=3 CANONICAL=I3L715-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R037-1", "url": "https://www.uniprot.org/uniprotkb/I3L715/entry#A0A5G2R037-1", "sequence": { "sequence": "MPSLPQERVIQGPSPLDLNTELPYQNTMKRKVRKKKKKGTITANVAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKIAELQNYQRINHFPGMGEICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQFQNYMKELKKKRKQKTFIVKPANGAMGHGISLIRNGDKLPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKIFLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYSVNKHNEHFERDETENKGSKRSIKWFTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLGFDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKKGVLLNALKLLNIRTSDKRRNLAKQKAEAQRRLYGQNSIKRLLPGSSDWEQQRHQLERRKEELKERLAQVRKQISKEEHENRHMGNYRRIYPPEDKTLLEKYENLLAVAFQTFLSGRAASFQRELNNPLKKMKEEDILDLLEQCEIDDEKLMGKTAKPRGLKDITHYIVKLLKKL", "length": 542, "header": "tr|A0A5G2R037-1|I3L715_PIG Computationally mapped isoform of Tubulin tyrosine ligase like 7 OS=Sus scrofa OX=9823 GN=TTLL7 PE=3 SV=1 CANONICAL=I3L715-1" }, "locus": { "chromosome": "6", "start_pos": 129809942, "end_pos": 129756907, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071553.1", "url": "https://www.ensembl.org/id/ENSSSCT00000071553.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000063870.1", "url": "https://www.ensembl.org/id/ENSSSCP00000063870.1" } ] } }, { "isoform_ac": "I3L715-1", "url": "https://www.uniprot.org/uniprotkb/I3L715/entry#I3L715-1", "sequence": { "sequence": "MPSLPQERVIQGPSPLDLNTELPYQNTMKRKVRKKKKKGTITANVAGTKFEIVRLVIDEMGFMKTPDEDETSNLIWCDSAVQQEKIAELQNYQRINHFPGMGEICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQFQNYMKELKKKRKQKTFIVKPANGAMGHGISLIRNGDKLPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKIFLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYSVNKHNEHFERDETENKGSKRSIKWFTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLGFDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKKGVLLNALKLLNIRTSDKRRNLAKQKAEAQRRLYGQNSIKRLLPGSSDWEQQRHQLERRKEELKERLAQVRKQISKEEHENRHMGNYRRIYPPEDKTLLEKYENLLAVAFQTFLSGRAASFQRELNNPLKKMKEEDILDLLEQCEIDDEKLMGKTAKPRGLKPLSSMPESSEMMKRQKYYSSDSSYGSSSSSSESEDNGKEEYQNKKREKQVTYNLKQSNHYKLIQQSSSIRRSVSCPRSISSQSPSSVDNRPFSAQQMISASRPTSGSRSHSLNRASSYTRHMPHSNDASSTSSPMCESLRQLRTKEQEDDLTSQTLFVLKDMKIRFPGKSDAESLLLIEDIIDNWKYHKTKVASYWLIKLDSVKQRKVLDIVKTSIRTVLPRIWKVPDVEEVNLYRIFNRVFNRLLWSHGQGLWNCFCDSGSSWESIFSKSPEVVTPLQLQCCQRLVELCKQCLLVVYKYAADSRGSLSGIGTDWGNSRYLLPGSTQFFLRTPTYNLKYSSPGMARSNVLFTSRYGHL", "length": 887, "header": "tr|I3L715-1|I3L715_PIG Isoform 1 of Tubulin tyrosine ligase like 7 OS=Sus scrofa OX=9823 GN=TTLL7 PE=3 SV=3 CANONICAL=I3L715-1" }, "locus": { "chromosome": "6", "start_pos": 129863956, "end_pos": 129756907, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022348.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022348.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019819.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019819.3" } ] } }, { "isoform_ac": "I3LG58-1", "url": "https://www.uniprot.org/uniprotkb/I3L715/entry#I3LG58-1", "sequence": { "sequence": "MLPGQSLKLRINHFPGMGEICRKDFLARNMTKMIKSRPLDYTFVPRTWIFPAEYTQFQNYMKELKKKRKQKTFIVKPANGAMGHGISLIRNGDKLPSQDHLIVQEYIEKPFLMEGYKFDLRIYILVTSCDPLKIFLYHDGLVRMGTEKYIPPNESNLTQLYMHLTNYSVNKHNEHFERDETENKGSKRSIKWFTEFLQANQHDVAKFWSDISELVVKTLIVAEPHVLHAYRMCRPGQPPGSESVCFEVLGFDILLDRKLKPWLLEINRAPSFGTDQKIDYDVKKGVLLNALKLLNIRTSDKRRNLAKQKAEAQRRLYGQNSIKRLLPGSSDWEQQRHQLERRKEELKERLAQVRKQISKEEHENRHMGNYRRIYPPEDKTLLEKYENLLAVAFQTFLSGRAASFQRELNNPLKKMKEEDILDLLEQCEIDDEKLMGKTAKPRGLKPLSSMPESSEMMKRQKYYSSDSSYGSSSSSSESEDNGKEEYQNKKREKQVTYNLKQSNHYKLIQQSSSIRRSVSCPRSISSQSPSSVDNRPFSAQQMISASRPTSGSRSHSLNRASSYTRHMPHSNDASSTSSPMCESLRQLRTKEQEDDLTSQTLFVLKDMKIRFPGKSDAESLLLIEDIIDNWKYHKTKVASYWLIKLDSVKQRKVLDIVKTSIRTVLPRIWKVPDVEEVNLYRIFNRVFNRLLWSHGQGLWNCFCDSGSSWESIFSKSPEVVTPLQLQCCQRLVELCKQCLLVVYKYAADSRGSLSGIGTDWGNSRYLLPGSTQFFLRTPTYNLKYSSPGMARSNVLFTSRYGHL", "length": 803, "header": "tr|I3LG58-1|I3L715_PIG Computationally mapped isoform of Tubulin tyrosine ligase like 7 OS=Sus scrofa OX=9823 GN=TTLL7 PE=3 SV=3 CANONICAL=I3L715-1" }, "locus": { "chromosome": "6", "start_pos": 129863956, "end_pos": 129757213, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023127.3", "url": "https://www.ensembl.org/id/ENSSSCT00000023127.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023051.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023051.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R037", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R037" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522876", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522876", "resource": "KEGG Pathway" }, { "id": "R-SSC-8955332", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8955332", "resource": "Reactome", "description": "Carboxyterminal post-translational modifications of tubulin" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "pmid": "" }, { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "pmid": "" }, { "name": "tubulin-glutamic acid ligase activity", "id": "GO:0070740", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070740", "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "pmid": "" }, { "name": "tubulin binding", "id": "GO:0015631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015631", "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "pmid": "" }, { "name": "beta-tubulin binding", "id": "GO:0048487", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048487", "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "pmid": "" }, { "name": "alpha-tubulin binding", "id": "GO:0043014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043014", "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "I3L715", "url": "https://www.uniprot.org/uniprotkb/I3L715" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 240, "end_pos": 242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 237, "end_pos": 239 }, { "start_pos": 240, "end_pos": 242 }, { "start_pos": 250, "end_pos": 252 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSG2-1", "uniprot_ac": "F1SSG2", "uniprot_id": "F1SSG2_PIG", "mass": { "chemical_mass": 101313.0, "monoisotopic_mass": 101313.0 }, "refseq": {}, "gene_names": [ { "name": "TBC1D2", "type": "recommended", "evidence": [ { "id": "F1SSG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" } ] } ], "protein_names": [ { "name": "TBC1 domain family member 2A", "type": "recommended", "evidence": [ { "id": "F1SSG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSG2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSG2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBC1D2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2", "locus": { "chromosome": "1", "start_pos": 240002169, "end_pos": 240049827, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005376", "url": "https://www.ensembl.org/id/ENSSSCG00000005376" } ] } } ], "crossref": [ { "id": "F1SSG2", "url": "https://alphafold.ebi.ac.uk/entry/F1SSG2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005376", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005376", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01265", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01265", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035969", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035969", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050302", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050302", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47219:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47219:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8854214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R1V6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1V6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R1V6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1V6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSG2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSG2-1", "url": "https://www.uniprot.org/uniprotkb/F1SSG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDAQENPAESSSSAPVSEEPASLARGSQVLPPEESTVCTRPLEAAPKKLCGYLSKLGGKRPIRGWKSRWFFYDERKCHLYYSRTAQDANPLDSIDLSCAVFDCKADAEEGTFEIKTPSRTITLKAATKQAMLYWLQQLQTKRWEFHNSPPAPPAAPDAVLAGNGPALRLELEQEETELEEFLCPVKTPPGLVGMAAALQPVPSMPLALQNISIKHLGTEIQNTMYNIRGNKQTQGTGQGPPGEDSSPSEEPQREEQPPDPRAPGKDPGDSPKPTPKFSLTANLNQKAKRHNNTFPLFTEGLTRNRTAHEKVLALEQQVLMLTKELKAQKELVKILHKALEAAQQEKRVSGAYLAAEDKDRLELVRHKVRQIAELGKRVEALEQERESLLQMASLREQQVQELQQHVQLLMDKNQAKQQVICKLSEKVTQDFMHPPHQSPTPPEEASRDFLSQQEKMEHLKDDMEAYRTQNRFLNSEIHQVTKIWRKAAEKEKALLMKCAYLQAKNCQVESKYLAGLRRLQEAMGVKAGECSELLRQLIQEALQWEASEASAESVMLSPISEYDEYGFLTVPNYEVEDLKLLAKIQALEVHSHHLLAHEAVEQPLRERWAALGKLAPSAELKQLLRAGVPREHRPRVWRWLVHLRVQHLQAPAATRSSGSEPDLPQQQNPTIGYCQGLNRLAAIALLVLDEEESAFWCLVAIVETIMPADYYSKTLSASQVDQRVLQDLLSEKLPRLMAHLGQRHVDLSFITFNWFLVVFADSLISNILLQVWDAFLYEGTKVVFRYALAIFKYNEEEILRLQDSLEIYQYLRFFTKTICNSRKLMNIAFNDMNPFPKKQLQQLRIVHRERLEAELHELEQFKAEYLETRASQGSSVPEGCISEDEGEVEAEG", "length": 893, "header": "tr|F1SSG2-1|F1SSG2_PIG Isoform 1 of TBC1 domain family member 2A OS=Sus scrofa OX=9823 GN=TBC1D2 PE=4 SV=4 CANONICAL=F1SSG2-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R1V6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSG2/entry#A0A5G2R1V6-1", "sequence": { "sequence": "MEDAQENPAESSSSAPVSEEPASLARGSQVLPPEESTVCTRPLEAAPKKLCGYLSKLGGKRPIRGWKSRWFFYDERKCHLYYSRTAQDANPLDSIDLSCAVFDCKADAEEGTFEIKTPSRTITLKAATKQAMLYWLQQLQTKRWEFHNSPPAPPAAPDAVLAGNGPALRLELEQEETELEEFLCPVKTPPGLVGMAAALQPVPSMPLALQNISIKHLGTEIQNTMYNIRGNKQTQGTGQGPPGEDSSPSEEPQREEQPPDPRAPGKDPGDSPKPTPKFSLTANLNQKAKRHNNTFPLFTEGLTRNRTAHEKVLALEQQVLMLTKELKAQKELVKILHKALEAAQQEKRVSGAYLAAEDKDRLELVRHKVRQIAELGKRVEALEQERESLLQMASLREQQVQELQQHVQLLMDKNQAKQQVICKLSEKVTQDFMHPPHQSPTPPEEASRDFLSQQEKMEHLKDDMEAYRTQNRFLNSEIHQVTKIWRKAAEKEKALLMKCAYLQAKNCQVESKYLAGLRRLQEAMGVKAGECSELLRQLIQEALQWEASEASAESVMLSPISEYDEYGFLTVPNYEVEDLKLLAKIQALEVHSHHLLAHEAVEQPLRERWAALGKLAPSAELKQLLRAGVPREHRPRVWRWLVHLRLQAPRSFHLHLCHGCLAVTSVDHSSLLPSLSRLAAIALLVLDEEESAFWCLVAIVETIMPADYYSKTLSASQVDQRVLQDLLSEKLPRLMAHLGQRHVDLSFITFNWFLVVFADSLISNILLQVWDAFLYEGTKVVFRYALAIFKYNEEEILRLQDSLEIYQYLRFFTKTICNSRKLMNIAFNDMNPFPKKQLQQLRIVHRERLEAELHELEQFKAEYLETRASQGSSVPEGCISEDEGEVEAEG", "length": 890, "header": "tr|A0A5G2R1V6-1|F1SSG2_PIG Computationally mapped isoform of TBC1 domain family member 2A OS=Sus scrofa OX=9823 GN=TBC1D2 PE=4 SV=1 CANONICAL=F1SSG2-1" }, "locus": { "chromosome": "1", "start_pos": 240049734, "end_pos": 240004947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089289.1", "url": "https://www.ensembl.org/id/ENSSSCT00000089289.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071166.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071166.1" } ] } }, { "isoform_ac": "F1SSG2-1", "url": "https://www.uniprot.org/uniprotkb/F1SSG2/entry#F1SSG2-1", "sequence": { "sequence": "MEDAQENPAESSSSAPVSEEPASLARGSQVLPPEESTVCTRPLEAAPKKLCGYLSKLGGKRPIRGWKSRWFFYDERKCHLYYSRTAQDANPLDSIDLSCAVFDCKADAEEGTFEIKTPSRTITLKAATKQAMLYWLQQLQTKRWEFHNSPPAPPAAPDAVLAGNGPALRLELEQEETELEEFLCPVKTPPGLVGMAAALQPVPSMPLALQNISIKHLGTEIQNTMYNIRGNKQTQGTGQGPPGEDSSPSEEPQREEQPPDPRAPGKDPGDSPKPTPKFSLTANLNQKAKRHNNTFPLFTEGLTRNRTAHEKVLALEQQVLMLTKELKAQKELVKILHKALEAAQQEKRVSGAYLAAEDKDRLELVRHKVRQIAELGKRVEALEQERESLLQMASLREQQVQELQQHVQLLMDKNQAKQQVICKLSEKVTQDFMHPPHQSPTPPEEASRDFLSQQEKMEHLKDDMEAYRTQNRFLNSEIHQVTKIWRKAAEKEKALLMKCAYLQAKNCQVESKYLAGLRRLQEAMGVKAGECSELLRQLIQEALQWEASEASAESVMLSPISEYDEYGFLTVPNYEVEDLKLLAKIQALEVHSHHLLAHEAVEQPLRERWAALGKLAPSAELKQLLRAGVPREHRPRVWRWLVHLRVQHLQAPAATRSSGSEPDLPQQQNPTIGYCQGLNRLAAIALLVLDEEESAFWCLVAIVETIMPADYYSKTLSASQVDQRVLQDLLSEKLPRLMAHLGQRHVDLSFITFNWFLVVFADSLISNILLQVWDAFLYEGTKVVFRYALAIFKYNEEEILRLQDSLEIYQYLRFFTKTICNSRKLMNIAFNDMNPFPKKQLQQLRIVHRERLEAELHELEQFKAEYLETRASQGSSVPEGCISEDEGEVEAEG", "length": 893, "header": "tr|F1SSG2-1|F1SSG2_PIG Isoform 1 of TBC1 domain family member 2A OS=Sus scrofa OX=9823 GN=TBC1D2 PE=4 SV=4 CANONICAL=F1SSG2-1" }, "locus": { "chromosome": "1", "start_pos": 240049734, "end_pos": 240004947, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005916.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005916.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005769.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005769.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 441, "start_aa": "Thr", "end_pos": 441, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr441", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R1V6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R1V6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SSG2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SSG2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SSG2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" } ], "pmid": "" }, { "name": "cell junction", "id": "GO:0030054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030054", "evidence": [ { "database": "UniProtKB", "id": "F1SSG2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "F1SSG2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "F1SSG2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" } ], "pmid": "" }, { "name": "cadherin binding", "id": "GO:0045296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045296", "evidence": [ { "database": "UniProtKB", "id": "F1SSG2", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSG2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 893, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSG2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSG2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 144, "start_aa": "Pro", "end_aa": "Trp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSG2" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 628, "end_pos": 780, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 441 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 211, "end_pos": 213 }, { "start_pos": 292, "end_pos": 294 }, { "start_pos": 305, "end_pos": 307 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5B4-1", "uniprot_ac": "F2Z5B4", "uniprot_id": "F2Z5B4_PIG", "mass": { "chemical_mass": 39880.0, "monoisotopic_mass": 39880.0 }, "refseq": {}, "gene_names": [ { "name": "HNRNPA3", "type": "recommended", "evidence": [ { "id": "F2Z5B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4" } ] } ], "protein_names": [ { "name": "Heterogeneous nuclear ribonucleoprotein A3", "type": "recommended", "evidence": [ { "id": "F2Z5B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a role in cytoplasmic trafficking of RNA. Binds to the cis-acting response element, A2RE. May be involved in pre-mRNA splicing.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B4", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4#function" }, { "database": "UniProtKB", "id": "ARBA00053431", "url": "https://www.uniprot.org/uniprotkb/ARBA00053431#function" }, { "database": "UniProtKB", "id": "A0A5G2R4A8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4A8#function" }, { "database": "UniProtKB", "id": "A0A8W4FMX4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMX4#function" }, { "database": "UniProtKB", "id": "A0A8W4FBN6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBN6#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5B4", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HNRNPA3", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4", "locus": {} } ], "crossref": [ { "id": "F2Z5B4", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5B4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000015988", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015988", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12578", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12578", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12582", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12582", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12763", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12763", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516520", "url": "https://www.ncbi.nlm.nih.gov/gene/100516520", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021662", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021662", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR48026", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48026", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48026:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48026:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48026:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48026:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11627", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11627", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A5G2R4A8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4A8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R4A8-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4A8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBN6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FBN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FBN6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMX4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FMX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FMX4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5B4", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5B4-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGEFFLPVLKVVEGDLATLWVVAETLEVVEATLAVAETLVEEEVMVVEVVAAGVVMEEAMVDIMDLEVMVATMVVVLVIVVEEAMVVVDQDMGTKVVDMVAVVEDMMVTMKEEILEVVTMVVVGTIMILEIIVDNNNQIMDP", "length": 355, "header": "tr|F2Z5B4-1|F2Z5B4_PIG Isoform 1 of Heterogeneous nuclear ribonucleoprotein A3 OS=Sus scrofa OX=9823 GN=HNRNPA3 PE=4 SV=4 CANONICAL=F2Z5B4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R4A8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4/entry#A0A5G2R4A8-1", "sequence": { "sequence": "MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF", "length": 349, "header": "tr|A0A5G2R4A8-1|F2Z5B4_PIG Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein A3 OS=Sus scrofa OX=9823 GN=HNRNPA3 PE=4 SV=2 CANONICAL=F2Z5B4-1" }, "locus": { "chromosome": "15", "start_pos": 82964401, "end_pos": 82958413, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000067462.2", "url": "https://www.ensembl.org/id/ENSSSCT00000067462.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072043.2", "url": "https://www.ensembl.org/id/ENSSSCP00000072043.2" } ] } }, { "isoform_ac": "A0A8W4FBN6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4/entry#A0A8W4FBN6-1", "sequence": { "sequence": "MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF", "length": 349, "header": "tr|A0A8W4FBN6-1|F2Z5B4_PIG Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein A3 OS=Sus scrofa OX=9823 GN=HNRNPA3 PE=4 SV=1 CANONICAL=F2Z5B4-1" }, "locus": { "chromosome": "15", "start_pos": 82964401, "end_pos": 82958413, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095710.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095710.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076807.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076807.1" } ] } }, { "isoform_ac": "A0A8W4FMX4-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4/entry#A0A8W4FMX4-1", "sequence": { "sequence": "MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF", "length": 331, "header": "tr|A0A8W4FMX4-1|F2Z5B4_PIG Computationally mapped isoform of Heterogeneous nuclear ribonucleoprotein A3 OS=Sus scrofa OX=9823 GN=HNRNPA3 PE=4 SV=1 CANONICAL=F2Z5B4-1" }, "locus": { "chromosome": "15", "start_pos": 82964401, "end_pos": 82958413, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000099765.1", "url": "https://www.ensembl.org/id/ENSSSCT00000099765.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080248.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080248.1" } ] } }, { "isoform_ac": "F2Z5B4-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4/entry#F2Z5B4-1", "sequence": { "sequence": "MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGEFFLPVLKVVEGDLATLWVVAETLEVVEATLAVAETLVEEEVMVVEVVAAGVVMEEAMVDIMDLEVMVATMVVVLVIVVEEAMVVVDQDMGTKVVDMVAVVEDMMVTMKEEILEVVTMVVVGTIMILEIIVDNNNQIMDP", "length": 355, "header": "tr|F2Z5B4-1|F2Z5B4_PIG Isoform 1 of Heterogeneous nuclear ribonucleoprotein A3 OS=Sus scrofa OX=9823 GN=HNRNPA3 PE=4 SV=4 CANONICAL=F2Z5B4-1" }, "locus": { "chromosome": "15", "start_pos": 82964212, "end_pos": 82958413, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017409.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017409.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016940.5", "url": "https://www.ensembl.org/id/ENSSSCP00000016940.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R4A8", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R4A8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B4", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4" } ], "pmid": "" }, { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B4", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B4", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B4", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4" } ], "pmid": "" }, { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B4", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B4", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5B4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 355, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5B4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5B4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5B4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5B4" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 35, "end_pos": 118, "start_aa": "Arg", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PV48-1", "uniprot_ac": "F6PV48", "uniprot_id": "F6PV48_PIG", "mass": { "chemical_mass": 51097.0, "monoisotopic_mass": 51097.0 }, "refseq": {}, "gene_names": [ { "name": "SLC19A2", "type": "recommended", "evidence": [ { "id": "F6PV48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ] } ], "protein_names": [ { "name": "Thiamine transporter 1", "type": "recommended", "evidence": [ { "id": "F6PV48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PV48/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 19 member 2", "type": "synonym", "evidence": [ { "id": "F6PV48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PV48/entry#names_and_taxonomy" } ] }, { "name": "ThTr-1", "type": "synonym", "evidence": [ { "id": "F6PV48", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PV48/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "High-affinity transporter for the intake of thiamine.", "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48#function" }, { "database": "UniProtKB", "id": "PIRNR028739", "url": "https://www.uniprot.org/uniprotkb/PIRNR028739#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC19A2", "url": "https://www.uniprot.org/uniprotkb/F6PV48", "locus": { "chromosome": "4", "start_pos": 81536464, "end_pos": 81510098, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006290", "url": "https://www.ensembl.org/id/ENSSSCG00000006290" } ] } } ], "crossref": [ { "id": "F6PV48", "url": "https://alphafold.ebi.ac.uk/entry/F6PV48", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006290", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006290", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028338", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028338", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CYRCRPL", "url": "https://omabrowser.org/oma/group/CYRCRPL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10686", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10686", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10686:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10686:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01770", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01770", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-196819", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196819", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R5S6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R5S6-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5S6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PV48-1", "url": "https://www.uniprot.org/uniprotkb/F6PV48-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVPGPVSRRAAAAAATVLLRTARVPRECWFLPTALICAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVFLATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVVDLSMYQKVTSYCRSATLVGFTVGSVLGQILVSVADWSLFSLNVISLTCVSVAFAVAWFLPMPQKSLFFHHVPASQGMNGIKGSKPDRLLVLRVLWNDFLICYSSRPLLCWSVWWALSTCGYFQVVNYAQGLWEQVMPSRHASIYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGELTLSVFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAASLSMERYALVFGVNTFIALALQTLLTVIVVDASGLGLEITTQFFIYAGYFALIAVVFLANGAVSIMKKYRKQEDPESRSQVTTS", "length": 458, "header": "tr|F6PV48-1|F6PV48_PIG Isoform 1 of Thiamine transporter 1 OS=Sus scrofa OX=9823 GN=SLC19A2 PE=3 SV=1 CANONICAL=F6PV48-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R5S6-1", "url": "https://www.uniprot.org/uniprotkb/F6PV48/entry#A0A5G2R5S6-1", "sequence": { "sequence": "MDVPGPVSRRAAAAAATVLLRTARVPRECWFLPTALICAYGFFASLRPSEPFLTPYLLGPDKNLTEREGSKPDRLLVLRVLWNDFLICYSSRPLLCWSVWWALSTCGYFQVVNYAQGLWEQVMPSRHASIYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGELTLSVFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAASLSMERYALVFGVNTFIALALQTLLTVIVVDASGLGLEITTQFFIYAGYFALIAVVFLANGAVSIMKKYRKQEDPESRSQVTTS", "length": 296, "header": "tr|A0A5G2R5S6-1|F6PV48_PIG Computationally mapped isoform of Thiamine transporter 1 OS=Sus scrofa OX=9823 GN=SLC19A2 PE=3 SV=1 CANONICAL=F6PV48-1" }, "locus": { "chromosome": "4", "start_pos": 81534455, "end_pos": 81510297, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086554.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086554.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072442.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072442.1" } ] } }, { "isoform_ac": "F6PV48-1", "url": "https://www.uniprot.org/uniprotkb/F6PV48/entry#F6PV48-1", "sequence": { "sequence": "MDVPGPVSRRAAAAAATVLLRTARVPRECWFLPTALICAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVFLATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVVDLSMYQKVTSYCRSATLVGFTVGSVLGQILVSVADWSLFSLNVISLTCVSVAFAVAWFLPMPQKSLFFHHVPASQGMNGIKGSKPDRLLVLRVLWNDFLICYSSRPLLCWSVWWALSTCGYFQVVNYAQGLWEQVMPSRHASIYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGELTLSVFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAASLSMERYALVFGVNTFIALALQTLLTVIVVDASGLGLEITTQFFIYAGYFALIAVVFLANGAVSIMKKYRKQEDPESRSQVTTS", "length": 458, "header": "tr|F6PV48-1|F6PV48_PIG Isoform 1 of Thiamine transporter 1 OS=Sus scrofa OX=9823 GN=SLC19A2 PE=3 SV=1 CANONICAL=F6PV48-1" }, "locus": { "chromosome": "4", "start_pos": 81534455, "end_pos": 81510297, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000006894.5", "url": "https://www.ensembl.org/id/ENSSSCT00000006894.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006706.3", "url": "https://www.ensembl.org/id/ENSSSCP00000006706.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R5S6", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R5S6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-196819", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-196819", "resource": "Reactome", "description": "Vitamin B1 (thiamin) metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XMI2-1", "protein_name": "Thiamine transporter 1", "gene_name": "SLC19A2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGPRGARPARSGPGCCWALPTGLLCAYGFFCSVRPSEPFLTRYLLGPHKNLSETQVFNEIYPVWTYCYLALLFPVFLATDYLRYKPVVLLQGLSLIITWFLLLYAQGLRAFQLLEFFYGMGTATDIAYYSYIYSVVDVDLYRKVTSYCRSATLVGYTVGSVCGQLLVSLAGWSLFSLNVISLTSVSVAFGTAWFLPMPRKSLFFHHAAAQPFSLEMKVMDCKNGAIVQDQPGVPRVPGWEDEVKMPLNREGHPAEKKEQKVDALKVLKDLWRDFLQCYSSRTMLCWSVWWALSTCGYFQVINYAQGLWEMVLPSHSTEIYNGGVEAASTLLGAVAVFVVGHIKTSWAMWGEVALALFSFLIAAAVYIMDTVHNIWVCYASYVVFRIIYMLLITIATFQIATNLSVERYALVFGVNTFIALALQTLLTLIVVDASGLGLDIFTQFMIYASYFAAISLVFLGSGLYSIMRAHRRQVQNRSPESC", "length": 483 }, "evidence": [ { "id": "F6PV48", "url": "https://omabrowser.org/oma/group/F6PV48/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BLU2-1", "protein_name": "Thiamine transporter 1", "gene_name": "SLC19A2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVVPGPVSRRAAAAATMLLRTARVPRECWFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVFLATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVVDLSMYQKVTSYCRSATLVGFTVGSVLGQILVSVASWSLFSLNVISLTCVSVAFAVAWFLPMPQKSLFFHHVPPSCQGTNGIKIQNGGVATDTAASNHRPQWEDVESKIPLNREEPPVEEQESKPDRLLVLKVLWNDFLVCYSSRPLLCWSVWWALSTCGYFQVVNYAQGLWEQVMPSRHAAIYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGELTLSLFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFFIYAGYFALIAVVFLANGTVSIMKKYRKQEDPESSSQETPS", "length": 496 }, "evidence": [ { "id": "F6PV48", "url": "https://omabrowser.org/oma/group/F6PV48/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F340-1", "protein_name": "Thiamine transporter 1", "gene_name": "slc19a2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSEPWLYPTVLLCIYGFFSSHRPLEAFLMPFLMGPDKNLTETEVVSEIYPLWTYSYLALLFPVFLATDYLRYKPVIILQAASYVVTYALLVKAQGLQAMQIVEVFFGLATATEIAYYSYIYSVVEPSHYQMVTGFCRSVTLLGSAMGSLLGQILFSVADIALFYLCVITLVSFCIAFVAPWFLPMPSKSLFFHQSESSSQDEAVLETVNTSPLIEKPEDPESNKQPNANEKTTLKSNTSSSGLLDVLKMLWTDFLQCYSSSTLLAWSVWWALSTCGYLQVINYAQALWEDILTSKNYDIYNGYVETISTLLGAFAAFVVGYVKVSWAVWGELALCIFTVVIAVCVYLMYAVRNIWVCYTSYIIFRAVYMLLITIATYQIAANLSMKRYALVFGVNTFIALSLQMLLTVIVVDSAGLHLEISIQFLIYASYFAAVAVIFFIAGLYKLFRSRTSGGQNELSSAEA", "length": 463 }, "evidence": [ { "id": "F6PV48", "url": "https://omabrowser.org/oma/group/F6PV48/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "O60779-1", "protein_name": "Thiamine transporter 1", "gene_name": "SLC19A2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVPGPVSRRAAAAAATVLLRTARVRRECWFLPTALLCAYGFFASLRPSEPFLTPYLLGPDKNLTEREVFNEIYPVWTYSYLVLLFPVFLATDYLRYKPVVLLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYSVVDLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVAGWSLFSLNVISLTCVSVAFAVAWFLPMPQKSLFFHHIPSTCQRVNGIKVQNGGIVTDTPASNHLPGWEDIESKIPLNMEEPPVEEPEPKPDRLLVLKVLWNDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYTQGLWEKVMPSRYAAIYNGGVEAVSTLLGAVAVFAVGYIKISWSTWGEMTLSLFSLLIAAAVYIMDTVGNIWVCYASYVVFRIIYMLLITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDASGLGLEITTQFLIYASYFALIAVVFLASGAVSVMKKCRKLEDPQSSSQVTTS", "length": 497 }, "evidence": [ { "id": "F6PV48", "url": "https://omabrowser.org/oma/group/F6PV48/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q499Q0-1", "protein_name": "Thiamine transporter 1", "gene_name": "Slc19a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVPARVSRRAAAAAARMLLRTARVPRECWFLPTALLCAYGFFANLRPSEPFLTPYLLGPDKNLTERQVFNEIYPVWTYSYLLLLFPVFLATDYLRYKPVILLQGLSLIVTWFMLLYAQGLLAVQFLEFFYGIATATEIAYYSYIYTVVDLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVVGWSLFSLNVLSLTCVSVAFAVAWFLPMPQKSLFFHHIPSSCHGVNGLKVQNGGITTDTPASNHLPGWEDIESKIPLNLDEPPVEEPEEPKPDRLRVFKVLWNDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYAQGLWEKVMPSQNAVIYNGGVEAVSTLLGASAVFAVGYIKLSWSTWGEVTLFLCSLLIAAAVYIMDTVENIWVCYASYVVFRIIYMVLITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDARGLGLCIITQFLIYASYFAAISVVFLANGIVSIVKKCRKQEDPNSSPQATTS", "length": 498 }, "evidence": [ { "id": "F6PV48", "url": "https://omabrowser.org/oma/group/F6PV48/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9EQN9-1", "protein_name": "Thiamine transporter 1", "gene_name": "Slc19a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDVPARVSRRAAAAAARMLLRTARVPRECWFLPTALLCAYGFFANLRPSEPFLTPYLLGPDKNLTERQVYNEIYPVWTYSYLLLLFPVFLATDYLRYKPVILLQGLSLIVTWFMLLYAQGLLAIQFLEFFYGIATATEIAYYSYIYTVVDLGMYQKVTSYCRSATLVGFTVGSVLGQILVSVVGWSLFSLNVISLTCVSVAFAVAWFLPMPQKSLFFHHIPSSCHGVNGLKVQNGGIVTDTPAANHLPGWEDIESKIPLNLDEPPVEEPEEPKPDRLRVFRVLWNDFLMCYSSRPLLCWSVWWALSTCGYFQVVNYAQGLWEKVMPSQNADIYNGGVEAVSTLLGASAVFAVGYIKLSWSTWGEMTLFLCSLLIAAAVYVMDTVQSIWVCYASYVVFRIIYMVLITIATFQIAANLSMERYALVFGVNTFIALALQTLLTLIVVDARGLGLCITTQFLIYASYFAAISVVFLANGIVSIIKKCRKQEDPSSSPQASTS", "length": 498 }, "evidence": [ { "id": "F6PV48", "url": "https://omabrowser.org/oma/group/F6PV48/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "vitamin transmembrane transporter activity", "id": "GO:0090482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090482", "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ], "pmid": "" }, { "name": "thiamine transmembrane transporter activity", "id": "GO:0015234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015234", "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ], "pmid": "" }, { "name": "thiamine diphosphate biosynthetic process", "id": "GO:0009229", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009229", "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ], "pmid": "" }, { "name": "thiamine transport", "id": "GO:0015888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015888", "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ], "pmid": "" }, { "name": "pyridoxine transport", "id": "GO:0031923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031923", "evidence": [ { "database": "UniProtKB", "id": "F6PV48", "url": "https://www.uniprot.org/uniprotkb/F6PV48" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6PV48-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 458, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6PV48-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6PV48" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV04-1", "uniprot_ac": "F1SV04", "uniprot_id": "F1SV04_PIG", "mass": { "chemical_mass": 40717.0, "monoisotopic_mass": 40717.0 }, "refseq": {}, "gene_names": [ { "name": "NT5C1A", "type": "recommended", "evidence": [ { "id": "F1SV04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ] } ], "protein_names": [ { "name": "5'-nucleotidase, cytosolic IA", "type": "synonym", "evidence": [ { "id": "F1SV04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV04/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NT5C1A", "url": "https://www.uniprot.org/uniprotkb/F1SV04", "locus": { "chromosome": "6", "start_pos": 95473266, "end_pos": 95497000, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003662", "url": "https://www.ensembl.org/id/ENSSSCG00000003662" } ] } } ], "crossref": [ { "id": "F1SV04", "url": "https://alphafold.ebi.ac.uk/entry/F1SV04", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003662", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003662", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR010394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YQIEHED", "url": "https://omabrowser.org/oma/group/YQIEHED/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR31367", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31367", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31367:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31367:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06189", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06189", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-73621", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73621", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-74259", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-74259", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R6Y4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6Y4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R6Y4-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6Y4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV04-1", "url": "https://www.uniprot.org/uniprotkb/F1SV04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPEEPRELREPGPGAETAAAPRWEEAKTFYDNLTSKKKPKSPKPQNAVTIAVSSRALFRMDEEQRIYMEQGVEEYVRYQLEHENEPFSPGPISSPIQALEAVNKRLRELYPESEDLFDIVLVTNNHAQVGVRLINSINHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVQEAIDEGIAAATIFSPSRDVAVSQSQLRVAFDGDAVLFSDESERIVKAHGLDSFFEHEKAHENKPLAQGPLKGFLEALGRLQKKFYSKGLRLECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYGVAQTPRRTTPTKQAPSAQ", "length": 365, "header": "tr|F1SV04-1|F1SV04_PIG Isoform 1 of 5'-nucleotidase, cytosolic IA OS=Sus scrofa OX=9823 GN=NT5C1A PE=1 SV=2 CANONICAL=F1SV04-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R6Y4-1", "url": "https://www.uniprot.org/uniprotkb/F1SV04/entry#A0A5G2R6Y4-1", "sequence": { "sequence": "MEPEEPRELREPGPGAETAAAPRWEEAKTFYDNLTSKKKPKSPKPQNAVTIAVSSRALFRMDEEQRIYMEQGVEEYVRYQLEHENEPFSPGAFPFVKALEAVNKRLRELYPESEDLFDIVLVTNNHAQVGVRLINSINHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVQEAIDEGIAAATIFSPSRDVAVSQSQLRVAFDGDAVLFSDESERIVKAHGLDSFFEHEKAHENKPLAQGPLKGFLEALGRLQKKFYSKGLRLECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYGVAQTPRRTTPTKQAPSAQ", "length": 364, "header": "tr|A0A5G2R6Y4-1|F1SV04_PIG Computationally mapped isoform of 5'-nucleotidase, cytosolic IA OS=Sus scrofa OX=9823 GN=NT5C1A PE=1 SV=1 CANONICAL=F1SV04-1" }, "locus": { "chromosome": "6", "start_pos": 95496905, "end_pos": 95480719, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000074484.2", "url": "https://www.ensembl.org/id/ENSSSCT00000074484.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072840.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072840.1" } ] } }, { "isoform_ac": "F1SV04-1", "url": "https://www.uniprot.org/uniprotkb/F1SV04/entry#F1SV04-1", "sequence": { "sequence": "MEPEEPRELREPGPGAETAAAPRWEEAKTFYDNLTSKKKPKSPKPQNAVTIAVSSRALFRMDEEQRIYMEQGVEEYVRYQLEHENEPFSPGPISSPIQALEAVNKRLRELYPESEDLFDIVLVTNNHAQVGVRLINSINHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVQEAIDEGIAAATIFSPSRDVAVSQSQLRVAFDGDAVLFSDESERIVKAHGLDSFFEHEKAHENKPLAQGPLKGFLEALGRLQKKFYSKGLRLECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYGVAQTPRRTTPTKQAPSAQ", "length": 365, "header": "tr|F1SV04-1|F1SV04_PIG Isoform 1 of 5'-nucleotidase, cytosolic IA OS=Sus scrofa OX=9823 GN=NT5C1A PE=1 SV=2 CANONICAL=F1SV04-1" }, "locus": { "chromosome": "6", "start_pos": 95496905, "end_pos": 95480719, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004058.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004058.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003967.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003967.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R6Y4", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R6Y4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-73621", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73621", "resource": "Reactome", "description": "Pyrimidine catabolism" }, { "id": "R-SSC-74259", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-74259", "resource": "Reactome", "description": "Purine catabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZYY7-1", "protein_name": "5'-nucleotidase, cytosolic IA", "gene_name": "Nt5c1a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSGRLGRAGGAGSLALPPGPAACLSHPGRASLPRLSSLSSLSPTLSSPARPDRIRAGTWNQGSPRRPENPDQGQRPPRCRAGRKPRRSMTISRPRRNPNRPWLILVTEIVSCGLPVSGVWSVPTEAPEMVDSQPKPQNAVTIAVSSRALFRMDEEQRIYTEQGVEEYVRYQLEHENEPFSPGPAFPFVKALEAVNKQLRELYPDSEDIFDIVLMTNNHAQVGVRLINSINHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVREAIDEGIAAATIFSPSKDVVVSQSQLRVAFDGDAVLFSDESERIVKAHGLDRFFEHEKAHENKPLAQGPLKGFLEALGRLQKKFYSKGLRLECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYGVAQNPRREKQSLGAQ", "length": 454 }, "evidence": [ { "id": "F1SV04", "url": "https://omabrowser.org/oma/group/F1SV04/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZCP6-1", "protein_name": "5'-nucleotidase, cytosolic IA", "gene_name": "NT5C1A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLCPHSPWRSVCRISALPVLPQPCSASWGRSAIRFVTLQQCGKCPPASLVSQCRAERAHCWELLPPCVRVHYLSLHPHALSCSSRCLLFWVSVAAGILGMFQLRRGSVPDPGPKPENAITIAVSSRALFRMEEEQKIYNEQGVEAYVKYQLDHENEPFLPGAAFPFVKALEAVNTQLRELYPDSEELFDIVLMTNNHAQVGVRLINSINHYDLFIERFCMTGGNSPIGYLKAYHTNLYLSSDAEKVSGAIEEGIAAATIFSPSKDLEVSEKQLRVAFDGDAVLFSDESEQIVKAHGLDMFFEHEKAHENNPLAQGPLKGFLEALGKLQKKFYSKGLRMECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLKKIRPHIFFDDQMFHVEGAKEMGTVAAHVPYGVAQKHKRPLQEKQPQNSK", "length": 435 }, "evidence": [ { "id": "F1SV04", "url": "https://omabrowser.org/oma/group/F1SV04/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A3KFX0-1", "protein_name": "Cytosolic 5'-nucleotidase 1A", "gene_name": "Nt5c1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPGQPREAREPGPGAETAAVPRWEEAKTFYDNLSSKKKPKSPKPQNAVTIAVSSRALFRMDEEQRIYTEQGVEEYVRYQLEHENEPFSPGPAFPFVKALEAVNKRLRELYPDSEDIFDIVLMTNNHAQVGVRLINSINHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADADKVREAIDEGIAAATIFSPSRDVVVSQSQLRVAFDGDAVLFSDESERIVKAHGLDRFFEHEKAHENKPLAQGPLKGFLEALGRLQKKFYSKGLRLECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYGVAQNPRRAAAAKQSLGAQ", "length": 365 }, "evidence": [ { "id": "F1SV04", "url": "https://omabrowser.org/oma/group/F1SV04/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1BF39-1", "protein_name": "5'-nucleotidase, cytosolic IA", "gene_name": "NT5C1A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPGEPREPREPGPGAETAAAPQWEEAKTFYDNLAPQKKPKSPKPQNAVTIAVSSRALFRMDEEQRIYTEQGVEEYVRYQLEHENEPFSPGPAFPFVKALEAVNRRLRELYPESEDLFDIVLVTNNHAQVGVRLINSINHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVQEAIDEGIAAATIFSPSRDVAVSQSQLRVAFDGDAVLFSDESERIVKAHGLDRFFEHEKAHENKPLAQGPLKGFLEALGRLQKKFYSKGLRLECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYGVAQTSRRTSPTKQAAPAQ", "length": 365 }, "evidence": [ { "id": "F1SV04", "url": "https://omabrowser.org/oma/group/F1SV04/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BXI3-1", "protein_name": "Cytosolic 5'-nucleotidase 1A", "gene_name": "NT5C1A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPGQPREPQEPREPGPGAETAAAPVWEEAKIFYDNLAPKKKPKSPKPQNAVTIAVSSRALFRMDEEQQIYTEQGVEEYVRYQLEHENEPFSPGPAFPFVKALEAVNRRLRELYPDSEDVFDIVLMTNNHAQVGVRLINSINHYDLFIERFCMTGGNSPICYLKAYHTNLYLSADAEKVREAIDEGIAAATIFSPSRDVVVSQSQLRVAFDGDAVLFSDESERIVKAHGLDRFFEHEKAHENKPLAQGPLKGFLEALGRLQKKFYSKGLRLECPIRTYLVTARSAASSGARALKTLRSWGLETDEALFLAGAPKGPLLEKIRPHIFFDDQMFHVAGAQEMGTVAAHVPYGVAQTPRRTAPAKQAPSAQ", "length": 368 }, "evidence": [ { "id": "F1SV04", "url": "https://omabrowser.org/oma/group/F1SV04/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" }, { "name": "nucleotide binding", "id": "GO:0000166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000166", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" }, { "name": "5'-nucleotidase activity", "id": "GO:0008253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008253", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "nucleotide metabolic process", "id": "GO:0009117", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009117", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" }, { "name": "adenosine metabolic process", "id": "GO:0046085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046085", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" }, { "name": "AMP catabolic process", "id": "GO:0006196", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006196", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" }, { "name": "allantoin metabolic process", "id": "GO:0000255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000255", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" }, { "name": "dAMP catabolic process", "id": "GO:0046059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046059", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" }, { "name": "IMP catabolic process", "id": "GO:0006204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006204", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" }, { "name": "dGMP catabolic process", "id": "GO:0046055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046055", "evidence": [ { "database": "UniProtKB", "id": "F1SV04", "url": "https://www.uniprot.org/uniprotkb/F1SV04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 33, "end_pos": 35, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SV04-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 365, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SV04-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SV04" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 33, "end_pos": 35 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6Q2W9-1", "uniprot_ac": "F6Q2W9", "uniprot_id": "F6Q2W9_PIG", "mass": { "chemical_mass": 111043.0, "monoisotopic_mass": 111043.0 }, "refseq": {}, "gene_names": [ { "name": "SALL4", "type": "recommended", "evidence": [ { "id": "F6Q2W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ] } ], "protein_names": [ { "name": "Sal-like protein 4", "type": "recommended", "evidence": [ { "id": "F6Q2W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger protein SALL4", "type": "synonym", "evidence": [ { "id": "F6Q2W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Transcription factor with a key role in the maintenance and self-renewal of embryonic and hematopoietic stem cells.", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9#function" }, { "database": "UniProtKB", "id": "ARBA00054938", "url": "https://www.uniprot.org/uniprotkb/ARBA00054938#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SALL4", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9", "locus": { "chromosome": "17", "start_pos": 53084310, "end_pos": 53103190, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000053517", "url": "https://www.ensembl.org/id/ENSSSCG00000053517" } ] } } ], "crossref": [ { "id": "F6Q2W9", "url": "https://alphafold.ebi.ac.uk/entry/F6Q2W9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007478", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007478", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SKPQHIN", "url": "https://omabrowser.org/oma/group/SKPQHIN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23233", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23233", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23233:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23233:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8943724", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8943724", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2R9N1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9N1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2R9N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9N1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q2W9-1", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRRKQAKPQHINSEEDQGEQQPQQPAAEFADAAPSAPVAGEPGAPMNRPGTGDEVSADAAGIKRPRREETHICEKCCAEFFSFSEFLDHKKNCTKTPPVLIMNDSEGPVPSEDFPGAVLSQQPHSPSRKDTHSEEGGGSGDTKEKPGTESVVYLKTEAALPPTPQDISYLPKGKVANTNVTLQALRGTKVAVNQRSADAPPAPLPGANSIPWVLEQILCLQQQQLQQIQLTEQIRVQVNMWASHALHSGVAGADALKTLGSHVSQQVSAAVALLSQKAGSPGLSLDTLKPAKLPHANIPPAASSVSPGLTPFALKPDGTRVLPGVLSRLPGALLPQAPGSVLFQSPFSAGALDPSRKGKGKPPSVSPVDGKPKDEALYKHKCKYCSKVFGTDSSLQIHLRSHTGERPFVCSVCGHRFTTKGNLKVHFHRHPQVKANPQLFADFHDKMTAGNGIPCALSGPVPVDEPGLSLDSKPVLATGTPHVGLPQNLSSGTHPKDLKQDPQPGPSPENENGPILPGGGPNHNSPRVGGFQGSGAPEPGSETLKLQQLVENIDKAPTDPNECLICHRVLSCQSSLKMHYRTHTGERPFQCKICGRAFSTKGNLKTHLGVHRTNTSIKTQHSCPICQKKFTNAVLLQQHIRMHMGGQIPNTPLPENPCDFAGPEPMMVSENGSTGAVCLDDVESIDVDDVCAQEAPSSSSKVAVPLPGVHSASPTLGLTMMASLDAPGKGGLTALVLQRQSSRENGSVESDGLTNDSSSSVMGDQEYQSRSPDVLETTSFQAVSPANSQAESIKSKSPEVGSKADSSENSRTEMEGRSIPSTFIRAQPTTYVKVEVPGAFVGPATMSPGMTPLLAAQPRRQAKQHGCTRCGKNFSSASALQIHERTHTGEKPFVCNVCGRAFTTKGNLKVHYMTHGANNSSARRGRKLAIENTIALLGTDGKRVPEMFPKEILAPSVNVDPVVWNQYTTLLNGGLAMKTNEISVIQSGGIPTLPVSLGASSVAANTALSKMDGSQSAISAEAEKPGAADGGAAKHQFPHFLEENKIAVS", "length": 1050, "header": "tr|F6Q2W9-1|F6Q2W9_PIG Isoform 1 of Sal-like protein 4 OS=Sus scrofa OX=9823 GN=SALL4 PE=3 SV=1 CANONICAL=F6Q2W9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2R9N1-1", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9/entry#A0A5G2R9N1-1", "sequence": { "sequence": "MSRRKQAKPQHINSEEDQGEQQPQQPAAEFADAAPSAPVAGEPGAPMNRPGTGDEVSADAAGIKRPRREETHICEKCCAEFFSFSEFLDHKKNCTKTPPVLIMNDSEGPVPSEDFPGAVLSQQPHSPSRKDTHSEEGGGSGDTKEKPGTESVVYLKTEAALPPTPQDISYLPKGKVANTNVTLQALRGTKVAVNQRSADAPPAPLPGANSIPWVLEQILCLQQQQLQQIQLTEQIRVQVNMWASHALHSGVAGADALKTLGSHVSQQVSAAVALLSQKAGSPGLSLDTLKPAKLPHANIPPAASSVSPGLTPFALKPDGTRVLPGVLSRLPGALLPQAPGSVLFQSPFSAGALDPSRKGKGKPPSVSPVDGKPKDEALYKHKCKYCSKQLVENIDKAPTDPNECLICHRVLSCQSSLKMHYRTHTGERPFQCKICGRAFSTKGNLKTHLGVHYMTHGANNSSARRGRKLAIENTIALLGTDGKRVPEMFPKEILAPSVNVDPVVWNQYTTLLNGGLAMKTNEISVIQSGGIPTLPVSLGASSVAANTALSKMDGSQSAISAEAEKPGAADGGAAKHQFPHFLEENKIAVS", "length": 590, "header": "tr|A0A5G2R9N1-1|F6Q2W9_PIG Computationally mapped isoform of Sal-like protein 4 OS=Sus scrofa OX=9823 GN=SALL4 PE=3 SV=1 CANONICAL=F6Q2W9-1" }, "locus": { "chromosome": "17", "start_pos": 53103023, "end_pos": 53084315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090498.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090498.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073771.1", "url": "https://www.ensembl.org/id/ENSSSCP00000073771.1" } ] } }, { "isoform_ac": "F6Q2W9-1", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9/entry#F6Q2W9-1", "sequence": { "sequence": "MSRRKQAKPQHINSEEDQGEQQPQQPAAEFADAAPSAPVAGEPGAPMNRPGTGDEVSADAAGIKRPRREETHICEKCCAEFFSFSEFLDHKKNCTKTPPVLIMNDSEGPVPSEDFPGAVLSQQPHSPSRKDTHSEEGGGSGDTKEKPGTESVVYLKTEAALPPTPQDISYLPKGKVANTNVTLQALRGTKVAVNQRSADAPPAPLPGANSIPWVLEQILCLQQQQLQQIQLTEQIRVQVNMWASHALHSGVAGADALKTLGSHVSQQVSAAVALLSQKAGSPGLSLDTLKPAKLPHANIPPAASSVSPGLTPFALKPDGTRVLPGVLSRLPGALLPQAPGSVLFQSPFSAGALDPSRKGKGKPPSVSPVDGKPKDEALYKHKCKYCSKVFGTDSSLQIHLRSHTGERPFVCSVCGHRFTTKGNLKVHFHRHPQVKANPQLFADFHDKMTAGNGIPCALSGPVPVDEPGLSLDSKPVLATGTPHVGLPQNLSSGTHPKDLKQDPQPGPSPENENGPILPGGGPNHNSPRVGGFQGSGAPEPGSETLKLQQLVENIDKAPTDPNECLICHRVLSCQSSLKMHYRTHTGERPFQCKICGRAFSTKGNLKTHLGVHRTNTSIKTQHSCPICQKKFTNAVLLQQHIRMHMGGQIPNTPLPENPCDFAGPEPMMVSENGSTGAVCLDDVESIDVDDVCAQEAPSSSSKVAVPLPGVHSASPTLGLTMMASLDAPGKGGLTALVLQRQSSRENGSVESDGLTNDSSSSVMGDQEYQSRSPDVLETTSFQAVSPANSQAESIKSKSPEVGSKADSSENSRTEMEGRSIPSTFIRAQPTTYVKVEVPGAFVGPATMSPGMTPLLAAQPRRQAKQHGCTRCGKNFSSASALQIHERTHTGEKPFVCNVCGRAFTTKGNLKVHYMTHGANNSSARRGRKLAIENTIALLGTDGKRVPEMFPKEILAPSVNVDPVVWNQYTTLLNGGLAMKTNEISVIQSGGIPTLPVSLGASSVAANTALSKMDGSQSAISAEAEKPGAADGGAAKHQFPHFLEENKIAVS", "length": 1050, "header": "tr|F6Q2W9-1|F6Q2W9_PIG Isoform 1 of Sal-like protein 4 OS=Sus scrofa OX=9823 GN=SALL4 PE=3 SV=1 CANONICAL=F6Q2W9-1" }, "locus": { "chromosome": "17", "start_pos": 53103023, "end_pos": 53084315, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008186.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008186.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007969.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007969.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 164, "start_aa": "Thr", "end_pos": 164, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr164", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2R9N1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2R9N1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8943724", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8943724", "resource": "Reactome", "description": "Regulation of PTEN gene transcription" } ], "orthologs": [ { "uniprot_canonical_ac": "M0RDM1-1", "protein_name": "Sal-like protein 4", "gene_name": "Sall4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRRKQAKPQHINSEEGQGEQPLQQPSPGLAEAPAAEEPGVPVNSSGNGDEASEDPAPAPVKRSRREDTHICNKCCAEFFSLSEFMEHKKSCTKNPPVLIMNDSEGAVPPEDFSRAVLGSPSNKDGLQENGGSSSGDLKENLGTDSILYLKTEATQPPAPQDISYLPKGKVANTNVTLQALRGTKVAVNQRSTDVPAAPVPAALSIPWILEQILCLQQQQLQQIQLTEQIRVQVNMWAAHALHSGVAGADTLKALSNHVSQQVSVSQQVSAAVALLSQKASNPTLSLDALKQAKLPHAAVPSTASSLSSGFTPFALKPDGTRVLPNFMSRLPNALLPQTPGSVLLQSPFSTVTLDQSKKGKGKPQNLSASMLDAKTKDEVVLGKHKCRYCSKVFGTDSSLQIHLRSHTGERPYVCPVCGHRFTTKGNLKVHFHRHPQVKANPQLFATEFQDKGASSTSPHYALPVPIPVDESSLSVDTEPVPVTGTPSIGLPQKLTSGPNPKDLMGGSLPNDIQPGPSPESEVGLPLLGAGMMRNPPRAGGFQGTGAPESGSETLKLQQLVENIDKATTDPNECLICHRVLSCQSSLKMHYRTHTGERPFQCKICGRAFSTKGNLKTHLGVHRTNMAVKTQHSCPICQKKFTNAVMLQQHIRMHMGGQIPNTPLPESPCDFTVPEPMAVSENGGGSGVCQEDAVEGMEAEEACIQDVPGGPSTVSAPLPGTHLASPSLGFPVMAPLDAQGRGALPALALQRQSSRESGSLEAGDSCLTNDSSSLMGDQECPSRSPDATETMCYQAVSPANSQAGSVKSRSPDGHKAEGVESCRVDTEGRTSLPSTFIRAQPTFVKVEVPGSFVGPPSVPSGMTPLLASQQPPRRQAKQHSCTRCGKNFSSASALQIHERTHTGEKPFVCNICARAFTTKGNLKVHYMTHGTNNNSARRGRKLAIENTMAALGAEGKRAPEVFPKELLSPTVSVDPATWNQYTSVLNGGLAMKTNEISVIQSGGIPTLPVSLGASSVVSNPTLSKLDGSQTGGSGAMSGAMSGNLEKPGVPDGVAKHQFPHFLEENKIAVS", "length": 1070 }, "evidence": [ { "id": "F6Q2W9", "url": "https://omabrowser.org/oma/group/F6Q2W9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BX22-1", "protein_name": "Sal-like protein 4", "gene_name": "Sall4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRRKQAKPQHINWEEGQGEQPQQLPSPDLAEALAAEEPGAPVNSPGNCDEASEDSIPVKRPRREDTHICNKCCAEFFSLSEFMEHKKSCTKTPPVLIMNDSEGPVPSEDFSRAALSHQLGSPSNKDSLQENGSSSGDLKKLGTDSILYLKTEATQPSTPQDISYLPKGKVANTNVTLQALRGTKVAVNQRGAEAPMAPMPAAQGIPWVLEQILCLQQQQLQQIQLTEQIRVQVNMWAAHALHSGVAGADTLKALSSHVSQQVSVSQQVSAAVALLSQKASNPALSLDALKQAKLPHASVPSAASPLSSGLTSFTLKPDGTRVLPNFVSRLPSALLPQTPGSVLLQSPFSAVTLDQSKKGKGKPQNLSASASVLDVKAKDEVVLGKHKCRYCPKVFGTDSSLQIHLRSHTGERPYVCPICGHRFTTKGNLKVHLQRHPEVKANPQLLAEFQDKGAVSAASHYALPVPVPADESSLSVDAEPVPVTGTPSLGLPQKLTSGPNSRDLMGGSLPNDMQPGPSPESEAGLPLLGVGMIHNPPKAGGFQGTGAPESGSETLKLQQLVENIDKATTDPNECLICHRVLSCQSSLKMHYRTHTGERPFQCKICGRAFSTKGNLKTHLGVHRTNTTVKTQHSCPICQKKFTNAVMLQQHIRMHMGGQIPNTPLPESPCDFTAPEPVAVSENGSASGVCQDDAAEGMEAEEVCSQDVPSGPSTVSLPVPSAHLASPSLGFSVLASLDTQGKGALPALALQRQSSRENSSLEGGDTGPANDSSLLVGDQECQSRSPDATETMCYQAVSPANSQAGSVKSRSPEGHKAEGVESCRVDTEGRTSLPPTFIRAQPTFVKVEVPGTFVGPPSMPSGMPPLLASQPQPRRQAKQHCCTRCGKNFSSASALQIHERTHTGEKPFVCNICGRAFTTKGNLKVHYMTHGANNNSARRGRKLAIENPMAALSAEGKRAPEVFSKELLSPAVSVDPASWNQYTSVLNGGLAMKTNEISVIQSGGIPTLPVSLGASSVVSNGTISKLDGSQTGVSMPMSGNGEKLAVPDGMAKHQFPHFLEENKIAVS", "length": 1067 }, "evidence": [ { "id": "F6Q2W9", "url": "https://omabrowser.org/oma/group/F6Q2W9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UJQ4-1", "protein_name": "Sal-like protein 4", "gene_name": "SALL4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRRKQAKPQHINSEEDQGEQQPQQQTPEFADAAPAAPAAGELGAPVNHPGNDEVASEDEATVKRLRREETHVCEKCCAEFFSISEFLEHKKNCTKNPPVLIMNDSEGPVPSEDFSGAVLSHQPTSPGSKDCHRENGGSSEDMKEKPDAESVVYLKTETALPPTPQDISYLAKGKVANTNVTLQALRGTKVAVNQRSADALPAPVPGANSIPWVLEQILCLQQQQLQQIQLTEQIRIQVNMWASHALHSSGAGADTLKTLGSHMSQQVSAAVALLSQKAGSQGLSLDALKQAKLPHANIPSATSSLSPGLAPFTLKPDGTRVLPNVMSRLPSALLPQAPGSVLFQSPFSTVALDTSKKGKGKPPNISAVDVKPKDEAALYKHKCKYCSKVFGTDSSLQIHLRSHTGERPFVCSVCGHRFTTKGNLKVHFHRHPQVKANPQLFAEFQDKVAAGNGIPYALSVPDPIDEPSLSLDSKPVLVTTSVGLPQNLSSGTNPKDLTGGSLPGDLQPGPSPESEGGPTLPGVGPNYNSPRAGGFQGSGTPEPGSETLKLQQLVENIDKATTDPNECLICHRVLSCQSSLKMHYRTHTGERPFQCKICGRAFSTKGNLKTHLGVHRTNTSIKTQHSCPICQKKFTNAVMLQQHIRMHMGGQIPNTPLPENPCDFTGSEPMTVGENGSTGAICHDDVIESIDVEEVSSQEAPSSSSKVPTPLPSIHSASPTLGFAMMASLDAPGKVGPAPFNLQRQGSRENGSVESDGLTNDSSSLMGDQEYQSRSPDILETTSFQALSPANSQAESIKSKSPDAGSKAESSENSRTEMEGRSSLPSTFIRAPPTYVKVEVPGTFVGPSTLSPGMTPLLAAQPRRQAKQHGCTRCGKNFSSASALQIHERTHTGEKPFVCNICGRAFTTKGNLKVHYMTHGANNNSARRGRKLAIENTMALLGTDGKRVSEIFPKEILAPSVNVDPVVWNQYTSMLNGGLAVKTNEISVIQSGGVPTLPVSLGATSVVNNATVSKMDGSQSGISADVEKPSATDGVPKHQFPHFLEENKIAVS", "length": 1053 }, "evidence": [ { "id": "F6Q2W9", "url": "https://omabrowser.org/oma/group/F6Q2W9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "pmid": "" }, { "name": "heterochromatin", "id": "GO:0000792", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000792", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F6Q2W9", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 489, "end_pos": 491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 615, "end_pos": 617, "annotation": "n_glycosylation_sequon" }, { "start_pos": 672, "end_pos": 674, "annotation": "n_glycosylation_sequon" }, { "start_pos": 746, "end_pos": 748, "annotation": "n_glycosylation_sequon" }, { "start_pos": 756, "end_pos": 758, "annotation": "n_glycosylation_sequon" }, { "start_pos": 874, "end_pos": 876, "annotation": "n_glycosylation_sequon" }, { "start_pos": 919, "end_pos": 921, "annotation": "n_glycosylation_sequon" }, { "start_pos": 920, "end_pos": 922, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6Q2W9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1050, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6Q2W9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6Q2W9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F6Q2W9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q2W9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 381, "end_pos": 408, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 164 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 180, "end_pos": 182 }, { "start_pos": 489, "end_pos": 491 }, { "start_pos": 615, "end_pos": 617 }, { "start_pos": 672, "end_pos": 674 }, { "start_pos": 746, "end_pos": 748 }, { "start_pos": 756, "end_pos": 758 }, { "start_pos": 874, "end_pos": 876 }, { "start_pos": 919, "end_pos": 921 }, { "start_pos": 920, "end_pos": 922 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5J9-1", "uniprot_ac": "F2Z5J9", "uniprot_id": "F2Z5J9_PIG", "mass": { "chemical_mass": 22854.0, "monoisotopic_mass": 22854.0 }, "refseq": {}, "gene_names": [ { "name": "RAB11B", "type": "recommended", "evidence": [ { "id": "F2Z5J9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ] } ], "protein_names": [ { "name": "small monomeric GTPase", "type": "recommended", "evidence": [ { "id": "F2Z5J9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.2", "type": "synonym", "evidence": [ { "id": "F2Z5J9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAB11B", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9", "locus": { "chromosome": "2", "start_pos": 70884462, "end_pos": 70896172, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000013600", "url": "https://www.ensembl.org/id/ENSSSCG00000013600" } ] } } ], "crossref": [ { "id": "ENSSSCG00000013600", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013600", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01868", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01868", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050209", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050209", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47979", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47979", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8854214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2RBP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RBP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5J9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL", "length": 205, "header": "tr|F2Z5J9-1|F2Z5J9_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB11B PE=1 SV=2 CANONICAL=F2Z5J9-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RBP9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9/entry#A0A5G2RBP9-1", "sequence": { "sequence": "MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTGGQGSGGHGQ", "length": 180, "header": "tr|A0A5G2RBP9-1|F2Z5J9_PIG Computationally mapped isoform of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB11B PE=1 SV=1 CANONICAL=F2Z5J9-1" }, "locus": { "chromosome": "2", "start_pos": 70895775, "end_pos": 70886333, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071591.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071591.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071602.1", "url": "https://www.ensembl.org/id/ENSSSCP00000071602.1" } ] } }, { "isoform_ac": "F2Z5J9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9/entry#F2Z5J9-1", "sequence": { "sequence": "VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL", "length": 205, "header": "tr|F2Z5J9-1|F2Z5J9_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB11B PE=1 SV=2 CANONICAL=F2Z5J9-1" }, "locus": { "chromosome": "2", "start_pos": 70894965, "end_pos": 70885364, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000014854.5", "url": "https://www.ensembl.org/id/ENSSSCT00000014854.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014453.3", "url": "https://www.ensembl.org/id/ENSSSCP00000014453.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RBP9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RBP9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8854214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854214", "resource": "Reactome", "description": "TBC/RABGAPs" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" }, { "name": "constitutive secretory pathway", "id": "GO:0045054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045054", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" }, { "name": "regulated exocytosis", "id": "GO:0045055", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045055", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "recycling endosome membrane", "id": "GO:0055038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055038", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" }, { "name": "phagocytic vesicle", "id": "GO:0045335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045335", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" }, { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J9", "url": "https://www.uniprot.org/uniprotkb/F2Z5J9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] }, { "id": "R-SSC-8854759", "name": "TBC1D14 binds RAB11 and ULK1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "recycling endosome membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8854759", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854759" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 134, "end_pos": 136 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQX4-1", "uniprot_ac": "F1SQX4", "uniprot_id": "F1SQX4_PIG", "mass": { "chemical_mass": 80309.0, "monoisotopic_mass": 80309.0 }, "refseq": { "ac": "XP_020925777", "name": "melanotransferrin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925777" }, "gene_names": [ { "name": "MELTF", "type": "recommended", "evidence": [ { "id": "F1SQX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ] }, { "name": "MELTF", "type": "synonym", "evidence": [ { "id": "XP_020925777", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925777" } ] } ], "protein_names": [ { "name": "Melanotransferrin", "type": "recommended", "evidence": [ { "id": "F1SQX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX4/entry#names_and_taxonomy" } ] }, { "name": "melanotransferrin", "type": "synonym", "evidence": [ { "id": "XP_020925777", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925777" } ] } ], "function": [ { "annotation": "Involved in iron cellular uptake. Seems to be internalized and then recycled back to the cell membrane. Binds a single atom of iron per subunit. Could also bind zinc.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RD69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD69#function" }, { "database": "UniProtKB", "id": "ARBA00054140", "url": "https://www.uniprot.org/uniprotkb/ARBA00054140#function" }, { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MELTF", "url": "https://www.uniprot.org/uniprotkb/F1SQX4", "locus": { "chromosome": "13", "start_pos": 133122065, "end_pos": 133094863, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011837", "url": "https://www.ensembl.org/id/ENSSSCG00000011837" } ] } } ], "crossref": [ { "id": "F1SQX4", "url": "https://alphafold.ebi.ac.uk/entry/F1SQX4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011837", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011837", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13529", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13529", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156949", "url": "https://www.ncbi.nlm.nih.gov/gene/100156949", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016357", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016357", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018195", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018195", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156949", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156949", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CPVPAMT", "url": "https://omabrowser.org/oma/group/CPVPAMT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQX4", "url": "https://www.orthodb.org/?gene=F1SQX4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11485", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11485", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11485:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11485:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00405", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00405", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-163125", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163125", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020925777", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925777", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RD69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RD69-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQX4-1", "url": "https://www.uniprot.org/uniprotkb/F1SQX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGPNVALWLCLALRTALGGMEVRWCTISDPEQQKCSDMSKAFQEAGIQPSLLCVQGTSADHCVQLITAREADAITLDGGAIYEAGKEHSLKPVVGEVYDQEVGTSYYAVAVVKRGSRVTINTLKGMKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGDTSYSESLCRLCRGNTAGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDGKTLPSWGQALLSQDFELLCRDGSRADVTEWRRCHLARVPSHAVVVRADTDGGLIFRLLNEGQRLFSHEGSSFQMFSSDAYGQKNLLFKDATSELVPIATQTYEAWLGHEYVQAMKGLLCDPNRLPHYLRWCVLSTPEIQKCGDMAVAFSRQRLKPEIQCVSADSPQHCMERIQAGHIDAVTLRGEDIYMAGKTYGLVPAAGEHYAPEDRSNSYFVVAVVKRNSSYAFTLDELRGKRSCHPGFGSLAGWDIPVGALVQRGFIRPRDCDVLTAVSEFFSASCVPVNNPKNYPSSLCALCVGDEQGRNKCVGNSQERYYGYSGAFRCLVENAGDVAFVKHTTVFDNTNGHNSEPWAAVLMSEDYELLCPNGARAEVTQFAACNLAQIPSQAVMVRPDTNIFTVYGLLDKAQDLFGDDHNKNGFKMFDSSNYHGQDLLFKDATIRVVPVGERTTYRDWLGPDYVAALEGMLSQQCSGAAVTASGVSLLLLPLALTAGLLQPSL", "length": 737, "header": "tr|F1SQX4-1|F1SQX4_PIG Isoform 1 of Melanotransferrin OS=Sus scrofa OX=9823 GN=MELTF PE=1 SV=3 CANONICAL=F1SQX4-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RD69-1", "url": "https://www.uniprot.org/uniprotkb/F1SQX4/entry#A0A5G2RD69-1", "sequence": { "sequence": "MHGPHIAFPVTLGGMEVRWCTISDPEQQKCSDMSKAFQEAGIQPSLLCVQGTSADHCVQLITAREADAITLDGGAIYEAGKEHSLKPVVGEVYDQEVGTSYYAVAVVKRGSRVTINTLKGMKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGDTSYSESLCRLCRGNTAGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDGKTLPSWGQALLSQDFELLCRDGSRADVTEWRRCHLARVPSHAVVVRADTDGGLIFRLLNEGQRLFSHEGSSFQMFSSDAYGQKNLLFKDATSELVPIATQTYEAWLGHEYVQAMKGLLCDPNRLPHYLRWCVLSTPEIQKCGDMAVAFSRQRLKPEIQCVSADSPQHCMERIQAGHIDAVTLRGEDIYMAGKTYGLVPAAGEHYAPEDRSNSYFVVAVVKRNSSYAFTLDELRGKRSCHPGFGSLAGWDIPVGALVQRGFIRPRDCDVLTAVSEFFSASCVPVNNPKNYPSSLCALCVGDEQGRNKCVGNSQERYYGYSGAFRCLVENAGDVAFVKHTTVFDNTNGHNSEPWAAVLMSEDYELLCPNGARAEVTQFAACNLAQIPSQAVMVRPDTNIFTVYGLLDKAQDLFGDDHNKNGFKMFDSSNYHGQDLLFKDATIRVVPVGERTTYRDWLGPDYVAALEGMLSQQCSGAAVTASGVSLLLLPLALTAGLLQPSL", "length": 731, "header": "tr|A0A5G2RD69-1|F1SQX4_PIG Computationally mapped isoform of Melanotransferrin OS=Sus scrofa OX=9823 GN=MELTF PE=1 SV=1 CANONICAL=F1SQX4-1" }, "locus": { "chromosome": "13", "start_pos": 133119994, "end_pos": 133096655, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086507.1", "url": "https://www.ensembl.org/id/ENSSSCT00000086507.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000072288.1", "url": "https://www.ensembl.org/id/ENSSSCP00000072288.1" } ] } }, { "isoform_ac": "F1SQX4-1", "url": "https://www.uniprot.org/uniprotkb/F1SQX4/entry#F1SQX4-1", "sequence": { "sequence": "MRGPNVALWLCLALRTALGGMEVRWCTISDPEQQKCSDMSKAFQEAGIQPSLLCVQGTSADHCVQLITAREADAITLDGGAIYEAGKEHSLKPVVGEVYDQEVGTSYYAVAVVKRGSRVTINTLKGMKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGDTSYSESLCRLCRGNTAGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDGKTLPSWGQALLSQDFELLCRDGSRADVTEWRRCHLARVPSHAVVVRADTDGGLIFRLLNEGQRLFSHEGSSFQMFSSDAYGQKNLLFKDATSELVPIATQTYEAWLGHEYVQAMKGLLCDPNRLPHYLRWCVLSTPEIQKCGDMAVAFSRQRLKPEIQCVSADSPQHCMERIQAGHIDAVTLRGEDIYMAGKTYGLVPAAGEHYAPEDRSNSYFVVAVVKRNSSYAFTLDELRGKRSCHPGFGSLAGWDIPVGALVQRGFIRPRDCDVLTAVSEFFSASCVPVNNPKNYPSSLCALCVGDEQGRNKCVGNSQERYYGYSGAFRCLVENAGDVAFVKHTTVFDNTNGHNSEPWAAVLMSEDYELLCPNGARAEVTQFAACNLAQIPSQAVMVRPDTNIFTVYGLLDKAQDLFGDDHNKNGFKMFDSSNYHGQDLLFKDATIRVVPVGERTTYRDWLGPDYVAALEGMLSQQCSGAAVTASGVSLLLLPLALTAGLLQPSL", "length": 737, "header": "tr|F1SQX4-1|F1SQX4_PIG Isoform 1 of Melanotransferrin OS=Sus scrofa OX=9823 GN=MELTF PE=1 SV=3 CANONICAL=F1SQX4-1" }, "locus": { "chromosome": "13", "start_pos": 133119994, "end_pos": 133094980, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012949.3", "url": "https://www.ensembl.org/id/ENSSSCT00000012949.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012608.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012608.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RD69", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RD69" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156949", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156949", "resource": "KEGG Pathway" }, { "id": "R-SSC-163125", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-163125", "resource": "Reactome", "description": "Post-translational modification: synthesis of GPI-anchored proteins" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z1N4-1", "protein_name": "Ovotransferrin", "gene_name": "MELTF", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSCTFSWFTLGVCDVLPFCCHSQVLMVNALNFTKALSLERVRWCTMSNQELSKCKDMSNAFTGAGILPPLECMEGESAANCTQMIKDYLADAVTLDGRWIYQAGKEYGLKPVVGEVYDQEIGTSYYAVAVVRKGSNITINSLKGVRSCHTGINRTAGWNVPVGYLIDSGRLPAMGCDLPKAVSDYFSASCVPGTNSASYPTSLCQLCKGDSSGQNKCQGNSQEQYYDYSGAFRCLAEGAGEVAFVKHSTVPENTDGRTLSTWAQQLRSKDFQLLCRNGSTADVTEWRTCHLARVPARAVVVRPDTDGTAVFQLLNQGQQRFNDVGAQFQMFDSTAYGAQNLMFRDSTTKLVAVTSQNYQAWLGDEYLHAMQALSCDPNTLPESLNWCVVSTEEIWKCGEMGTAFRSKNLKPEIQCISAKTKEECMEMIQKKEIDVVALGGADIYIAGKTYGLVPAAGESFSAEDNNNAYYAVALVKRNPSNAFTINDLKGKKSCHTGLGRTAGWNIPIGMLVKKGFINPRDCNIPQAVSEFFSASCVPSAEQGNYPSTLCQLCIGDNNGNNKCSASSQERYYSYNGAFRCLAEDAGDVAFVKHSTVFENTDGKNTESWARDLKSSGFQLLCRNGARAEVTQFAQCHLARVPAQAIMVHPDTNIFALYGLLDKAQEYFGNNSNRNGFKMFDSSAFQGKDLIFKDSAVKIVPVEERRTYAEWLGSEYVESLEGMQTPQCSGAGNKLIQQHLLVITFVPFIILGQLQGLG", "length": 757 }, "evidence": [ { "id": "F1SQX4", "url": "https://omabrowser.org/oma/group/F1SQX4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4ADK7-1", "protein_name": "Melanotransferrin", "gene_name": "Meltf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLSVTFWLLLSLRTVLCVMEMQWCTISDPEQQKCKDMSKAFQGAGIQPSLLCVQGTSTDHCVQLIKDQKADAITLDGGAIYQAGKEYGLKPVVGEVYDQDIGTSYYAVAVVRRNSNVTINTLKGVKSCHTGINRTVGWNVPVGYLVETGHLSVMGCDVLKAVGDYFGGSCVPGAGETSHSESLCRLCRGDSSGHNVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDGKTLPSWGKALMSQDFQLLCRDGSRADITEWRRCHLAKVPAHAVVVRDDMDGGLIFRLLNEGQLLFSHEDSSFQMFSSKAYGQKNLLFKDSTLELVPIATQNYESWLGQEYLHAMKGLLCDPNRLPHYLRWCVLSVPEIQKCGDMAVAFSRQSLKPEIQCVSAESPEHCMQQIQAGHIDAVTLRGEDIYRAGKAYGLVPAAGELYAEEDRSNSYFVVAVVRRDSSYSFTLDELRSKRSCHPGLGSPAGWEVPIGSLIQRGFIRPKDCDVLTAVSEFFNASCVPVNNPKNYPSSLCALCVGDEKGRNKCVGSSQERYYGYSGAFRCLVENAGDVAFLKHTTVFENTNGHNPEPWASHLRWQDYELLCPNGARAEVDQFQACNLAQMPSHAVMVHPDTNIFTVYGLLDKAQDLFGDDHNKNGFQMFDSSKYHSQDLLFKDATVRAVPVREKTTYLDWLGPDYVVALEGMLSQQCSGAGAAVHRVPPPALLLLALAAGLLPRVL", "length": 738 }, "evidence": [ { "id": "F1SQX4", "url": "https://omabrowser.org/oma/group/F1SQX4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BG25-1", "protein_name": "Melanotransferrin", "gene_name": "MELTF", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGSSVALWLFVTLRTVLGGMEVRWCTISDPEQQKCSDMSKAFQQAGIQPSVLCVQGTSADHCVQLITAQEADAITLDGGAIYQAGKEHGLKPVVGEVYDQEIGTSYYAVAVVKRGSQVTINTLKGMKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLRAVSDYFGGSCVPGAGETSYSESLCRLCRGDSTGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDGKTLPSWGQALLSQDFELLCQDGTRADVTEWRQCHLARVPAHAVVVRADTDGGLIFRLLNEGQRLFSHEGSSFHMFSSEAYGQKNLLFKDATSELVPIATQTYEAWLGREYLHAMKGLLCDPNRLPHYLRWCVLSTPEIQKCGDMAVAFSRQRLKPEIQCVSAESPQQCMERIQAGQIDAVTLKGEDIYTAGKTYGLVPAAGEHYTPEDRSNSYFVVAVVKRNSSYAFTLDELRGKRSCHPGFGSPAGWDIPVGTLVQRGFIRPRDCDVLTAVSEFFSASCVPVNNPQNYPSSLCALCVGDEQGRNKCVGNSQERYYGYSGAFRCLVENAGDVAFVKHTTVFDNTNGHSSEPWAAELMSEDYELLCPNGARAEVTQFAACNLAQIPSHAVMVRPDTNIFTVYGLLDKAQDLFGDDHNKNGFKMFDSSSYHGQDLLFKDATIRVVPVGEKTTYRSWLGPDYVVALEGMLSQQCSGTVTSASRVSLLLLLLPLALTASLLQPCL", "length": 739 }, "evidence": [ { "id": "F1SQX4", "url": "https://omabrowser.org/oma/group/F1SQX4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P08582-1", "protein_name": "Melanotransferrin", "gene_name": "MELTF", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRGPSGALWLLLALRTVLGGMEVRWCATSDPEQHKCGNMSEAFREAGIQPSLLCVRGTSADHCVQLIAAQEADAITLDGGAIYEAGKEHGLKPVVGEVYDQEVGTSYYAVAVVRRSSHVTIDTLKGVKSCHTGINRTVGWNVPVGYLVESGRLSVMGCDVLKAVSDYFGGSCVPGAGETSYSESLCRLCRGDSSGEGVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDGKTLPSWGQALLSQDFELLCRDGSRADVTEWRQCHLARVPAHAVVVRADTDGGLIFRLLNEGQRLFSHEGSSFQMFSSEAYGQKDLLFKDSTSELVPIATQTYEAWLGHEYLHAMKGLLCDPNRLPPYLRWCVLSTPEIQKCGDMAVAFRRQRLKPEIQCVSAKSPQHCMERIQAEQVDAVTLSGEDIYTAGKTYGLVPAAGEHYAPEDSSNSYYVVAVVRRDSSHAFTLDELRGKRSCHAGFGSPAGWDVPVGALIQRGFIRPKDCDVLTAVSEFFNASCVPVNNPKNYPSSLCALCVGDEQGRNKCVGNSQERYYGYRGAFRCLVENAGDVAFVRHTTVFDNTNGHNSEPWAAELRSEDYELLCPNGARAEVSQFAACNLAQIPPHAVMVRPDTNIFTVYGLLDKAQDLFGDDHNKNGFKMFDSSNYHGQDLLFKDATVRAVPVGEKTTYRGWLGLDYVAALEGMSSQQCSGAAAPAPGAPLLPLLLPALAARLLPPAL", "length": 738 }, "evidence": [ { "id": "F1SQX4", "url": "https://omabrowser.org/oma/group/F1SQX4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9R0R1-1", "protein_name": "Melanotransferrin", "gene_name": "Meltf", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRLLSVTFWLLLSLRTVVCVMEVQWCTISDAEQQKCKDMSEAFQGAGIRPSLLCVQGNSADHCVQLIKEQKADAITLDGGAIYEAGKEHGLKPVVGEVYDQDIGTSYYAVAVVRRNSNVTINTLKGVKSCHTGINRTVGWNVPVGYLVESGHLSVMGCDVLKAVGDYFGGSCVPGTGETSHSESLCRLCRGDSSGHNVCDKSPLERYYDYSGAFRCLAEGAGDVAFVKHSTVLENTDGNTLPSWGKSLMSEDFQLLCRDGSRADITEWRRCHLAKVPAHAVVVRGDMDGGLIFQLLNEGQLLFSHEDSSFQMFSSKAYSQKNLLFKDSTLELVPIATQNYEAWLGQEYLQAMKGLLCDPNRLPHYLRWCVLSAPEIQKCGDMAVAFSRQNLKPEIQCVSAESPEHCMEQIQAGHTDAVTLRGEDIYRAGKVYGLVPAAGELYAEEDRSNSYFVVAVARRDSSYSFTLDELRGKRSCHPYLGSPAGWEVPIGSLIQRGFIRPKDCDVLTAVSQFFNASCVPVNNPKNYPSALCALCVGDEKGRNKCVGSSQERYYGYSGAFRCLVEHAGDVAFVKHTTVFENTNGHNPEPWASHLRWQDYELLCPNGARAEVDQFQACNLAQMPSHAVMVRPDTNIFTVYGLLDKAQDLFGDDHNKNGFQMFDSSKYHSQDLLFKDATVRAVPVREKTTYLDWLGPDYVVALEGMLSQQCSGAGAAVQRVPLLALLLLTLAAGLLPRVL", "length": 738 }, "evidence": [ { "id": "F1SQX4", "url": "https://omabrowser.org/oma/group/F1SQX4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VTZ5-1", "protein_name": "Transferrin 2", "gene_name": "Tsf2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MASSLVFVALVGALCFTLANAQHHYDEHKTTRMVWCTKSQAEQYKCQNLTVAIERDRALFDEVFLNLTCFMAYSADECIHHIDREKAHITTLDAGDVFTAGRYNSLIPIMQEKLEGGFADYQSVAVIKKGSLPDLNNLRDMRNKRVCFPWVGSLAGWIVPIHTLQREGGMEVVDCNNQVKTAASYFNNSCAVYSLSDKHNPIGDNSDKLCTLCTGKIPGGRCSSADPYFGYEGAFKCLLEKGDVAFLRHSTVNEMLQTTEFKNIAPDTFELLCRDGRRASINDYRQCNWGQVPADAIVTSSARSFSDRKQYQQFLKRIAELYSDGTRDDQSRQGGQSFNSRNNINDQNAYGQFDNNDPYRTQNQYDQYRSERLDSSFAEERNQQDGTNTSILYEKFRIFESKRYGKPNLLFQDSSRALTVIPEDDQSFTKYLGPAINFIYGIRECPVPAMTLCVTSENELDKCIKMRTALKAHLLKPELICKKMHSHINCMQFIEAGKADISVFDAGDVYTGGLNYDLVPFMSEVYNLGEPEYYVVAVAKEDDPDTELTYLKGKNTCHTGINTAAGWTYPMALFISNGWIRPYGCDSVRAAAEYFTKSCVPGAISNEYNTGVPYDSMCDLCHGTSYRYCRRDASEEYYGHTGAFRCLVEGGGHVAFMKHTTVMESTGGKRKEWWARNALNDDFELLCTDGTRAEIQDYKRCNLGKVKANAVVTRGGVNYNETQMNAYINLLTYAQQLYGRKEVDAFSFSMFSSPIGHYDLIFQDATRQLQVIPPNKRRYDAYLGSDFMRARRITDCYAGASQLALSVGLLLVGSLVAML", "length": 819 }, "evidence": [ { "id": "F1SQX4", "url": "https://omabrowser.org/oma/group/F1SQX4/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" }, { "name": "side of membrane", "id": "GO:0098552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098552", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" }, { "name": "early endosome", "id": "GO:0005769", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005769", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" }, { "name": "recycling endosome", "id": "GO:0055037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055037", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" }, { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "iron ion transport", "id": "GO:0006826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006826", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" }, { "name": "positive regulation of plasminogen activation", "id": "GO:0010756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010756", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" }, { "name": "negative regulation of substrate adhesion-dependent cell spreading", "id": "GO:1900025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1900025", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" }, { "name": "positive regulation of extracellular matrix disassembly", "id": "GO:0090091", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090091", "evidence": [ { "database": "UniProtKB", "id": "F1SQX4", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQX4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 737, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQX4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQX4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX4" }, { "id": "PS51408", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51408" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transferrin-like", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 357, "start_aa": "Val", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 460, "end_pos": 462 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L672-1", "uniprot_ac": "I3L672", "uniprot_id": "I3L672_PIG", "mass": { "chemical_mass": 39201.0, "monoisotopic_mass": 39201.0 }, "refseq": { "ac": "XP_020929136", "name": "polycomb group RING finger protein 6 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929136" }, "gene_names": [ { "name": "PCGF6", "type": "recommended", "evidence": [ { "id": "I3L672", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ] }, { "name": "PCGF6", "type": "synonym", "evidence": [ { "id": "XP_020929136", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929136" } ] } ], "protein_names": [ { "name": "Polycomb group RING finger protein 6", "type": "recommended", "evidence": [ { "id": "I3L672", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L672/entry#names_and_taxonomy" } ] }, { "name": "RING finger protein 134", "type": "synonym", "evidence": [ { "id": "I3L672", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L672/entry#names_and_taxonomy" } ] }, { "name": "polycomb group RING finger protein 6 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020929136", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929136" } ] } ], "function": [ { "annotation": "Transcriptional repressor. May modulate the levels of histone H3K4Me3 by activating KDM5D histone demethylase. Component of a Polycomb group (PcG) multiprotein PRC1-like complex, a complex class required to maintain the transcriptionally repressive state of many genes, including Hox genes, throughout development. PcG PRC1 complex acts via chromatin remodeling and modification of histones; it mediates monoubiquitination of histone H2A 'Lys-119', rendering chromatin heritably changed in its expressibility. Within the PRC1-like complex, regulates RNF2 ubiquitin ligase activity.", "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672#function" }, { "database": "UniProtKB", "id": "ARBA00054318", "url": "https://www.uniprot.org/uniprotkb/ARBA00054318#function" }, { "database": "UniProtKB", "id": "A0A5G2RDS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDS3#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PCGF6", "url": "https://www.uniprot.org/uniprotkb/I3L672", "locus": { "chromosome": "14", "start_pos": 114249820, "end_pos": 114287434, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000020954", "url": "https://www.ensembl.org/id/ENSSSCG00000020954" } ] } } ], "crossref": [ { "id": "ENSSSCG00000020954", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000020954", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16737", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16737", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16738", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16738", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17085", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17085", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102164478", "url": "https://www.ncbi.nlm.nih.gov/gene/102164478", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032443", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032443", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038037", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038037", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102164478", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102164478", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YIMCSIC", "url": "https://omabrowser.org/oma/group/YIMCSIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45893", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45893", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16207", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16207", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8953750", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8953750", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020929136", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020929136", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5G2RDS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RDS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L672-1", "url": "https://www.uniprot.org/uniprotkb/I3L672-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGVPAVTTGNAGATKAEGAAAMPPPPPVSPPALTPAPSAGEEGPPPLPEAGAPGCSGSRPPELEPERSLGRLRSRFEDEDEELEEDEDLDEEEEEEEEEEMSHFSLRLEGGRPDSEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAVPQPVPLSKGRSKKVLESVFRIPPELDMSLLLEFIGANEGTGHIKPLEKKFVRVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLERYQTLREIRRAIGDAAMQDGLLVLHYGLVVSPLKIT", "length": 351, "header": "tr|I3L672-1|I3L672_PIG Isoform 1 of Polycomb group RING finger protein 6 OS=Sus scrofa OX=9823 GN=PCGF6 PE=4 SV=2 CANONICAL=I3L672-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RDS3-1", "url": "https://www.uniprot.org/uniprotkb/I3L672/entry#A0A5G2RDS3-1", "sequence": { "sequence": "MEGVPAVTTGNAGATKAEGAAAMPPPPPVSPPALTPAPSAGEEGPPPLPEAGAPGCSGSRPPELEPERSLGRLRSRFEDEDEELEEDEDLDEEEEEEEEEEMSHFSLRLEGGRPDSEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNISANEGTGHIKPLEKKFVRVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLERYQTLREIRRAIGDAAMQDGLLVLHYGLVVSPLKIT", "length": 276, "header": "tr|A0A5G2RDS3-1|I3L672_PIG Computationally mapped isoform of Polycomb group RING finger protein 6 OS=Sus scrofa OX=9823 GN=PCGF6 PE=4 SV=1 CANONICAL=I3L672-1" }, "locus": { "chromosome": "14", "start_pos": 114287381, "end_pos": 114250992, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079355.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079355.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068926.1", "url": "https://www.ensembl.org/id/ENSSSCP00000068926.1" } ] } }, { "isoform_ac": "I3L672-1", "url": "https://www.uniprot.org/uniprotkb/I3L672/entry#I3L672-1", "sequence": { "sequence": "MEGVPAVTTGNAGATKAEGAAAMPPPPPVSPPALTPAPSAGEEGPPPLPEAGAPGCSGSRPPELEPERSLGRLRSRFEDEDEELEEDEDLDEEEEEEEEEEMSHFSLRLEGGRPDSEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAVPQPVPLSKGRSKKVLESVFRIPPELDMSLLLEFIGANEGTGHIKPLEKKFVRVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLERYQTLREIRRAIGDAAMQDGLLVLHYGLVVSPLKIT", "length": 351, "header": "tr|I3L672-1|I3L672_PIG Isoform 1 of Polycomb group RING finger protein 6 OS=Sus scrofa OX=9823 GN=PCGF6 PE=4 SV=2 CANONICAL=I3L672-1" }, "locus": { "chromosome": "14", "start_pos": 114287381, "end_pos": 114250992, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027723.3", "url": "https://www.ensembl.org/id/ENSSSCT00000027723.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019523.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019523.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 8, "start_aa": "Thr", "end_pos": 8, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr8", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RDS3", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RDS3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102164478", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102164478", "resource": "KEGG Pathway" }, { "id": "R-SSC-8953750", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8953750", "resource": "Reactome", "description": "Transcriptional Regulation by E2F6" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZG86-1", "protein_name": "Polycomb group ring finger 6", "gene_name": "PCGF6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRPACRPAITGATRACAYAPGAGLGRSPPSARAMDAEVDAGSVVSGLSGGDGAGAGPADEDQEMEGAPSCSGSRSLPFEFERSRSESSGDEDDEDDEEEEMEEEELEGDSGVRFGTDDGELDSDDDRERMINLAELTPYILCSICKGYFIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVVNLEEREKKQMHDFYKERGLEVPKPAVPQPVPASRGRPRKVLGSVFRIPPELDISILLEFIGLWKRSLCVFQGRQRLDTWRNSSEGRWIWILLVSGLTQLEVKHTIFSIPEVDIICGDHLLEHYQTLREIRQVIGESAVQDGLLVLHYGLVVSPLTIP", "length": 365 }, "evidence": [ { "id": "I3L672", "url": "https://omabrowser.org/oma/group/I3L672/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BJL2-1", "protein_name": "Polycomb group RING finger protein 6", "gene_name": "PCGF6", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEGLPAVTAGNAGAAKAEGAATMPPPPPVSPPALTPAPAAGEEGPPPLPEAGDPGCSGSRPPELEPERSLGRLRGRFEDEDEELEEDEDLEEEEEEEEEEEMSHFSLRLEGGRPDSEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAVPQPVPSSKGRTKKVLESVFRIPPELDMSLLLEFIGANEGTGHFKPLEKKFVRVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLERYQTLREIRRAIGDAAMQDGLLVLHYGLVVSPLKIT", "length": 351 }, "evidence": [ { "id": "I3L672", "url": "https://omabrowser.org/oma/group/I3L672/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5XI70-1", "protein_name": "Polycomb group RING finger protein 6", "gene_name": "Pcgf6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEAETDATENKRASEAKRASAMLPPPPPPISPPALIPAPAAGEEGPASLAQAGAPGCSRSRPPELEPERSLGRLRGRFEDYDEELEEDEEMEEEEEEEEEMSHFSLRLESGRADSEDEEERLINLVELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVVNLEEREKKQMHDFYKERGLEVPKPAVPQPVPASKGRTKKALESVFRIPPELDVSLLLEFIGANEDTGHFKPLEKKFVRVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLERYQTLREIRRAIGDTAMQDGLLVLHYGLVVSPLKIT", "length": 351 }, "evidence": [ { "id": "I3L672", "url": "https://omabrowser.org/oma/group/I3L672/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q99NA9-1", "protein_name": "Polycomb group RING finger protein 6", "gene_name": "Pcgf6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEAETDATENKRASEAKRASAMPPPPPPPPPISPPALIPAPAAGEEGPASLGQAGAAGCSRSRPPALEPERSLGRLRGRFEDYDEELEEEEEMEEEEEEEEEMSHFSLRLESGRADSEDEEERLINLVELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAAPQPVPSSKGKTKKVLESVFRIPPELDMSLLLEFIGANEDTGHFKPLEKKFVRVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLERYQTLREIRRAIGDTAMQDGLLVLHYGLVVSPLKIT", "length": 353 }, "evidence": [ { "id": "I3L672", "url": "https://omabrowser.org/oma/group/I3L672/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BYE7-1", "protein_name": "Polycomb group RING finger protein 6", "gene_name": "PCGF6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEGVAVVTAGSVGAAKTEGAAALPPPPPVSPPALTPAPAAGEEGPAPLSETGAPGCSGSRPPELEPERSLGRFRGRFEDEDEELEEEEELEEEEEEEEEDMSHFSLRLEGGRQDSEDEEERLINLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVINLEEREKKQMHDFYKERGLEVPKPAVPQPVPSSKGRSKKVLESVFRIPPELDMSLLLEFIGANEGTGHFKPLEKKFVRVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLEQYQTLREIRRAIGDAAMQDGLLVLHYGLVVSPLKIT", "length": 350 }, "evidence": [ { "id": "I3L672", "url": "https://omabrowser.org/oma/group/I3L672/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ], "pmid": "" }, { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "PcG protein complex", "id": "GO:0031519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031519", "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ], "pmid": "" }, { "name": "PRC1 complex", "id": "GO:0035102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035102", "evidence": [ { "database": "UniProtKB", "id": "I3L672", "url": "https://www.uniprot.org/uniprotkb/I3L672" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L672", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L672" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 135, "end_pos": 174, "start_aa": "Cys", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 8 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUQ5-1", "uniprot_ac": "F1SUQ5", "uniprot_id": "F1SUQ5_PIG", "mass": { "chemical_mass": 572736.0, "monoisotopic_mass": 572736.0 }, "refseq": {}, "gene_names": [ { "name": "UBR4", "type": "recommended", "evidence": [ { "id": "F1SUQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ] } ], "protein_names": [ { "name": "Ubiquitin protein ligase E3 component n-recognin 4", "type": "synonym", "evidence": [ { "id": "F1SUQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBR4", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5", "locus": { "chromosome": "6", "start_pos": 77568415, "end_pos": 77708109, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003488", "url": "https://www.ensembl.org/id/ENSSSCG00000003488" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003488", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003488", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19680", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19680", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025704", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025704", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045189", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045189", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047509", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056530", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056530", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21725", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21725", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21725:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21725:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02207", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02207", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13764", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13764", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19423", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19423", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24079", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24079", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2RES2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RES2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RES2-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RES2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUQ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSGGEEAAAAAPAPGAPTAGADTTPGWEVAVRPLLSASYSAFEMKELPQLVASVIESETEILHHEKQYEPFYSSFVALSTHYITTVCSLIPRNQLQSVAAACKVLIEFSLLRLENPDEACAVSQKHLILLIKGLCTGCSRLDRTEIITFTAMMKSAKLPQTVKTLSDVEDQKELASPVSPELRQKEVQMNFLNQLTSVFNPRTVASSPVGPQTPAEGEGDEQSSTDQASAVKTKNVFIAQNVASLQELGGSEKLLRVCLNLPYFLRYINRFQDAVLANSFFIMPATVADATAVRNGFHSLVIDVTMALDTLSLPVLEPLNPSRLQDVTVLSLSCLYAGVSVATCMAILHVGSAQQVRTGSTSSKEEDYESDAATIVQKCLEIYDMIGQAISNSRRAGGEHYQNFQLLGAWCLLNSLFLILNLSPTALADKGKEKDPLAALRVRDILSRTKEGVGSPKLGPGKGHQGFGVLSVILANHAVKLLTSLFQDLQVEALHKGWEADGPPAVLSIMAQSTSIQRIQRLIDSVPLTNLLLTLLSTSYRKACVLQRQRKGSMSSDASASTDSNTYYEDDFSSTEEDSSQDDDSEPILGQWFEETISPSKEKAAPPPPPPPPPLESSPRVKSPSKQAPGEKGNILASRKDPELFLGLASNILNFITSSMLNSRNNFIRNYLSVSLSEHHMATLASIIKEVDKDGLKGSSDEEFAAALYHFNHSLVTSDLQSPNLQNTLLQQLGVAPFSEGPWPLYIHPQSLSVLSRLLLIWQHKAGAQGDPDVPECLKVWDRFLSTMKQNALQGVVPNETEDLNIEHLQLLLLIFHNFSEKGRRDILTLFVQIIQELSANMDAQMRSVPLILARLLLIFDYLLHQYSKAPVYLFEQVQHNLLSPPFGWASGSQDSSSRRATTPLYYGFKEVEENWSKHLSSDAVPQPRFYCVMSPEASEDDLNRLDSVACDVLFSTLVKYDELYSALTSLLAAGSQLDTVRRKENKNVTALEACALQYYFLILWRILGILPPSKTYMNQLAMNSPEMSECDILHTLRWSSRLRIGSYVGWIKDHLIKQGMKAEHAASLLDLASSKCSSVKYDVEIVEEYFARQISSFCSIDCTTILQLHEIPSLQSIYTLDAAISKVQVSLDEHFSKMAAETEPHKSSEITKNLLPATLQLIDTYASFTRAYLLQNFNEEGSTEKPSQEKLHGFAAVLAIGSSRCKANTLGPTLVQNLPSSVQAVCESWNNINTNEFPNIGSWRNAFANDTIPSESYISAVQAAHLGTLCGQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLLESSTESVAEISSNSLERILGPAESDEFLARVYEKLITGCYNILANHADPNSGLDESILEECLQYLEKQLESSQARKAMEEFFSDSGELVQIMMATANENLSAKFCNRVLKFFTKLFQLTEKSPNPSLLHLCGSLAQLACVEPVRLQAWLTRMTASPPKDSDQLDVIQENRQLLQLLTTYIVRENSQVGEGVCAVLLGTLIPMATEMLANGDGTGFPELMVVMATLASAGQGAGHLQLHNAAVDWLSRCKKYLSQKNVVEKLNANVMHGKHVIVLECTCHIMSYLADVTNALSQSNGQGPSHLSVDGEERAIEVDSDWVEELAVEEEDSQAEDSDEDSLCNKLCTFTITQKEFMNQHWYHCHTCKMVDGVGVCTVCAKVCHKDHEISYAKYGSFFCDCGAKEDGSCLALVKRTPSSGMSSTMKESAFQSEPRVSESLVRHTSTSPADKAKVTISDGKVADEEKPKKSSLCRTVEGCREELQNQANFSFAPLVLDMLNFLMDAIQTNFQQASAVGSSSRAQQALRELHTVDKVVEMTDQLMVPTLGSQEGAFENVRMNYSGDQGQTIRQLISAHVLRRVAMCVLSSPHGRRQHLAVSHEKGKITVLQLSALLKQADSSKRKLTLTRLASAPVPFTVLSLTGNPCKEDYLAVCGLKDCHVLTFSSSGSVSDHLVLHPQLATGNFIIKAVWLPGSQTELAIVTADFVKIYDLSIDALSPTFYFLLPSSKIRDVTFLFNEEGKNIIVIMSSAGYIYTQLMEEASSAQQGPFYVTNVLEINHEDLKDSNSQVAGGGVSVYYSHVLQMLFFSYCQGRSFAATISRTTLEVLQLFSINIKSSNGGSKTSPALCQWSEVMNHPGLVCCVQQTTGVPLVVMVKPDTFLIQEIKTLPAKAKIQDMVAIRHTACNEQQRTTMILLCEDGSLRIYMANVENTSYWLQPSLQPSSVISIMKPVRKRKTATITTRTSSQVTFPIDFFEHNQQLTDVEFGGNDLLQVYNAQQIKHRLNSTGMYVANTKPGGFTIEITNNNSTMVMTGMRIQIGTQAIERAPSYIEIFGRTMQLNLSRSRWFDFPFTREEALQADKKLNLFIGASVDPAGVTMIDAVKIYGKTKEQFGWPDEPPEEFPSASVSNICPSSLNQSNGTGDSDSAAPTTTSGTVLERLVVSSLEALESCFAVGPIIEKERNKNAAQELATLLLSLPAPASVQQQSKSLLASLHTSRSAYHSHKDQALLSKAVQCLNTSSKEGKDLDPEVFQRLVITARSIAIMRPNNLVHFTESKLPQMETEGADEGREPQKQLEGDCCSFITQLVNHFWKLHASKPKNAFLAPACLPGLTHIEATVNALVDIIHGYCTCELDCINTASKIYMQMLLCPDPAVSFSCKQALIRVLRPRNKRRHVTLPSSPRSNTPMGDKDDDDDDDADEKMQSSGIPNGGHIRQESQEQSEVDHGDFEMVSESMVLETAENVNNGNPSPLEALLAGAEGFPPMLDIPPDADDETMVELAIALSLQQDQQGSSSSALGLQSLGLSGQAPSSSSLDAGTLSDTTASAPASDDEGSTAATDGSTLRTSPADHGGSVGSESGGSAVDSVAGEHSVSGRSSAYGDATAEGHPAGPGSVSSSTGAISTTTGHQEGDGSEGEGEGEGEGDVHASNRLHMVRLMLLERLLQTLPQLRNVGGVRAIPYMQVILMLTTDLDGEDEKDKGALDNLLSQLIAELGMDKKDVSRKNERSALNEVHLVVMRLLSVFMSRTKSGSKSSICESSSLISSATAAALLSSGAVDYCLHVLKSLLEYWKSQQNDEEPVATSQLLKPHTTSSPPDMSPFFLRQYVKGHAADVFEAYTQLLTEMVLRLPYQIKKIADTNSRIPPPVFDHSWFYFLSEYLMIQQTPFVRRQVRKLLLFICGSKEKYRQLRDLHTLDSHVRGIKKLLEEQGIFLRASVVTASSGSALQYDTLISLMEHLKACAEIAAQRTVNWQKFCIKDDSVLYFLLQVSFLVDEGVSPVLLQLLSCALCGSKVLAALAAAGSSSATAASSAPVAASSGQAAAQSKSSTKKSKKEEKEKEKEGESSASQEDQLCTALVNQLNKFADKETLVQFLRCFLLESNSSSVRWQAHCLTLHIYRNSSKSQQELLLDLMWSIWPELPAYGRKAAQFVDLLGYFSLKTPQTEKKLKEYSQKAVEILRTQNHILTNHPNSNIYNTLSGLVEFDGYYLESDPCLVCNNPEVPFCYIKLSSIKVDTRYTTTQQVVKLIGSHTISKVTVKIGDLKRTKMVRTINLYYNNRTVQAIVELKNKPARWHKAKKVQLTPGQTEVKIDLPLPIVASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENVYQCHKCRSINYDEKDPFLCNACGFCKYARFDFMLYAKPCCAVDPIENEEDRKKAVSNINTLLDKADRVYHQLMGHRPQLENLLCKVNEAAPEKPQDDSGTAGGISSTSASVNRYILQLAQEYCGDCKNSFDELSKIIQKVFASRKELLEYDLQQREAATKSSRTSVQPTFTASQYRALSVLGCGHTSSTKCYGCASAVTEHCITLLRALATNPALRHILVSQGLIELFDYNLRRGSAAMREEVRQLMCLLTRDNPEATQQMNDLIIGKVSTALKGHWANPDLASSLQYEMLLLTDSISKEDSCWELRLRCALSLFLMAVNIKTPVVVENITLMCLRILQKLIKPPAPTSKKNKDVPVEALTTVKPYCNEIHAQAQLWLKRDPKASYEAWKKCLPIRGIDGNGKSPSKTELRHLYLTEKYVWRWKQFLSRRGKRASPLDLKLGHNNWLRQVLFTPATQAARQAACTIVEALATIPSRKQQVLDLLTSYLDELSVAGECAAEYLALYQKLITSAHWKVYLAARGVLPYVGNLITKEIARLLALEEATLSTDLQQGYALKSLTGLLSSFVEVESIKRHFKSRLVGTVLNGYLCLRKLVVQRTKLIDETQDMLLEMLEDMTTGTESETKAFMAVCIETAKRYNLDDYRTPVFIFERLCSIIYPEENEVTEFFVTLEKDPQQEDFLQGRMPGNPYSSNEPGIGPLMRDIKNKICQDCDLVALLEDDSGMELLVNNKIISLDLPVAEVYKKVWCTTNEGEPMRIVYRMRGLLGDATEEFIESLDSTTDEEEDEEEVYKMAGVMAQCGGLECMLNRLAGIKDFKQGRHLLTVLLKLFSYCVKVKVNRQQLVKLEMNTLNVMLGTLNLALVAEQESKDSGGAAVAEQVLSIMEIILDESNAEPLSEDKGNLLLTGDKDQLVMLLDQINSTFVRSNPSVLQGLLRIIPYLSFGEVEKMQILVERFKPYCSFDKYDEDHSGDDKVFLDCFCKIAAGIKNNSNGHQLKDLILQKGITQSALDYMKKHIPSAKNLDADIWKKFLSRPALPFILRLLRGLAIQHPATQVLIGTDSITNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQMEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKCNGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRATSREEKNLQGFLEQPKEKWVESAFEVDGPHYFTVLALHILPPEKWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSVYRSSLLFWALVDLIYNMFKKVPTSNTEGGWSCSLAEYIRHNDMPIHEAADKALKAFQEEFMPVETFSEFLDAAGLLAEITDPESFLKDLLNSVP", "length": 5180, "header": "tr|F1SUQ5-1|F1SUQ5_PIG Isoform 1 of Ubiquitin protein ligase E3 component n-recognin 4 OS=Sus scrofa OX=9823 GN=UBR4 PE=1 SV=4 CANONICAL=F1SUQ5-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RES2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5/entry#A0A5G2RES2-1", "sequence": { "sequence": "MWSIWPELPAYGRKAAQFVDLLGYFSLKTPQTEKKLKEYSQKAVEILRTQNHILTNHPNSNIYNTLSGLVEFDGYYLESDPCLVCNNPEVPFCYIKLSSIKVDTRYTTTQQVVKLIGSHTISKVTVKIGDLKRTKMVRTINLYYNNRTVQAIVELKNKPARWHKAKKVQLTPGQTEVKIDLPLPIVASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENVYQCHKCRSINYDEKDPFLCNACGFCKYARFDFMLYAKPCCAVDPIENEEDRKKAVSNINTLLDKADRVYHQLMGHRPQLENLLCKVNEAAPEKPQVMTASEGHVKRVLGQNQPL", "length": 345, "header": "tr|A0A5G2RES2-1|F1SUQ5_PIG Computationally mapped isoform of Ubiquitin protein ligase E3 component n-recognin 4 OS=Sus scrofa OX=9823 GN=UBR4 PE=1 SV=2 CANONICAL=F1SUQ5-1" }, "locus": { "chromosome": "6", "start_pos": 77618604, "end_pos": 77612495, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000089773.2", "url": "https://www.ensembl.org/id/ENSSSCT00000089773.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000073171.2", "url": "https://www.ensembl.org/id/ENSSSCP00000073171.2" } ] } }, { "isoform_ac": "F1SUQ5-1", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5/entry#F1SUQ5-1", "sequence": { "sequence": "MATSGGEEAAAAAPAPGAPTAGADTTPGWEVAVRPLLSASYSAFEMKELPQLVASVIESETEILHHEKQYEPFYSSFVALSTHYITTVCSLIPRNQLQSVAAACKVLIEFSLLRLENPDEACAVSQKHLILLIKGLCTGCSRLDRTEIITFTAMMKSAKLPQTVKTLSDVEDQKELASPVSPELRQKEVQMNFLNQLTSVFNPRTVASSPVGPQTPAEGEGDEQSSTDQASAVKTKNVFIAQNVASLQELGGSEKLLRVCLNLPYFLRYINRFQDAVLANSFFIMPATVADATAVRNGFHSLVIDVTMALDTLSLPVLEPLNPSRLQDVTVLSLSCLYAGVSVATCMAILHVGSAQQVRTGSTSSKEEDYESDAATIVQKCLEIYDMIGQAISNSRRAGGEHYQNFQLLGAWCLLNSLFLILNLSPTALADKGKEKDPLAALRVRDILSRTKEGVGSPKLGPGKGHQGFGVLSVILANHAVKLLTSLFQDLQVEALHKGWEADGPPAVLSIMAQSTSIQRIQRLIDSVPLTNLLLTLLSTSYRKACVLQRQRKGSMSSDASASTDSNTYYEDDFSSTEEDSSQDDDSEPILGQWFEETISPSKEKAAPPPPPPPPPLESSPRVKSPSKQAPGEKGNILASRKDPELFLGLASNILNFITSSMLNSRNNFIRNYLSVSLSEHHMATLASIIKEVDKDGLKGSSDEEFAAALYHFNHSLVTSDLQSPNLQNTLLQQLGVAPFSEGPWPLYIHPQSLSVLSRLLLIWQHKAGAQGDPDVPECLKVWDRFLSTMKQNALQGVVPNETEDLNIEHLQLLLLIFHNFSEKGRRDILTLFVQIIQELSANMDAQMRSVPLILARLLLIFDYLLHQYSKAPVYLFEQVQHNLLSPPFGWASGSQDSSSRRATTPLYYGFKEVEENWSKHLSSDAVPQPRFYCVMSPEASEDDLNRLDSVACDVLFSTLVKYDELYSALTSLLAAGSQLDTVRRKENKNVTALEACALQYYFLILWRILGILPPSKTYMNQLAMNSPEMSECDILHTLRWSSRLRIGSYVGWIKDHLIKQGMKAEHAASLLDLASSKCSSVKYDVEIVEEYFARQISSFCSIDCTTILQLHEIPSLQSIYTLDAAISKVQVSLDEHFSKMAAETEPHKSSEITKNLLPATLQLIDTYASFTRAYLLQNFNEEGSTEKPSQEKLHGFAAVLAIGSSRCKANTLGPTLVQNLPSSVQAVCESWNNINTNEFPNIGSWRNAFANDTIPSESYISAVQAAHLGTLCGQSLPLAASLKHTLLSLVRLTGDLIVWSDEMNPPQVIRTLLPLLLESSTESVAEISSNSLERILGPAESDEFLARVYEKLITGCYNILANHADPNSGLDESILEECLQYLEKQLESSQARKAMEEFFSDSGELVQIMMATANENLSAKFCNRVLKFFTKLFQLTEKSPNPSLLHLCGSLAQLACVEPVRLQAWLTRMTASPPKDSDQLDVIQENRQLLQLLTTYIVRENSQVGEGVCAVLLGTLIPMATEMLANGDGTGFPELMVVMATLASAGQGAGHLQLHNAAVDWLSRCKKYLSQKNVVEKLNANVMHGKHVIVLECTCHIMSYLADVTNALSQSNGQGPSHLSVDGEERAIEVDSDWVEELAVEEEDSQAEDSDEDSLCNKLCTFTITQKEFMNQHWYHCHTCKMVDGVGVCTVCAKVCHKDHEISYAKYGSFFCDCGAKEDGSCLALVKRTPSSGMSSTMKESAFQSEPRVSESLVRHTSTSPADKAKVTISDGKVADEEKPKKSSLCRTVEGCREELQNQANFSFAPLVLDMLNFLMDAIQTNFQQASAVGSSSRAQQALRELHTVDKVVEMTDQLMVPTLGSQEGAFENVRMNYSGDQGQTIRQLISAHVLRRVAMCVLSSPHGRRQHLAVSHEKGKITVLQLSALLKQADSSKRKLTLTRLASAPVPFTVLSLTGNPCKEDYLAVCGLKDCHVLTFSSSGSVSDHLVLHPQLATGNFIIKAVWLPGSQTELAIVTADFVKIYDLSIDALSPTFYFLLPSSKIRDVTFLFNEEGKNIIVIMSSAGYIYTQLMEEASSAQQGPFYVTNVLEINHEDLKDSNSQVAGGGVSVYYSHVLQMLFFSYCQGRSFAATISRTTLEVLQLFSINIKSSNGGSKTSPALCQWSEVMNHPGLVCCVQQTTGVPLVVMVKPDTFLIQEIKTLPAKAKIQDMVAIRHTACNEQQRTTMILLCEDGSLRIYMANVENTSYWLQPSLQPSSVISIMKPVRKRKTATITTRTSSQVTFPIDFFEHNQQLTDVEFGGNDLLQVYNAQQIKHRLNSTGMYVANTKPGGFTIEITNNNSTMVMTGMRIQIGTQAIERAPSYIEIFGRTMQLNLSRSRWFDFPFTREEALQADKKLNLFIGASVDPAGVTMIDAVKIYGKTKEQFGWPDEPPEEFPSASVSNICPSSLNQSNGTGDSDSAAPTTTSGTVLERLVVSSLEALESCFAVGPIIEKERNKNAAQELATLLLSLPAPASVQQQSKSLLASLHTSRSAYHSHKDQALLSKAVQCLNTSSKEGKDLDPEVFQRLVITARSIAIMRPNNLVHFTESKLPQMETEGADEGREPQKQLEGDCCSFITQLVNHFWKLHASKPKNAFLAPACLPGLTHIEATVNALVDIIHGYCTCELDCINTASKIYMQMLLCPDPAVSFSCKQALIRVLRPRNKRRHVTLPSSPRSNTPMGDKDDDDDDDADEKMQSSGIPNGGHIRQESQEQSEVDHGDFEMVSESMVLETAENVNNGNPSPLEALLAGAEGFPPMLDIPPDADDETMVELAIALSLQQDQQGSSSSALGLQSLGLSGQAPSSSSLDAGTLSDTTASAPASDDEGSTAATDGSTLRTSPADHGGSVGSESGGSAVDSVAGEHSVSGRSSAYGDATAEGHPAGPGSVSSSTGAISTTTGHQEGDGSEGEGEGEGEGDVHASNRLHMVRLMLLERLLQTLPQLRNVGGVRAIPYMQVILMLTTDLDGEDEKDKGALDNLLSQLIAELGMDKKDVSRKNERSALNEVHLVVMRLLSVFMSRTKSGSKSSICESSSLISSATAAALLSSGAVDYCLHVLKSLLEYWKSQQNDEEPVATSQLLKPHTTSSPPDMSPFFLRQYVKGHAADVFEAYTQLLTEMVLRLPYQIKKIADTNSRIPPPVFDHSWFYFLSEYLMIQQTPFVRRQVRKLLLFICGSKEKYRQLRDLHTLDSHVRGIKKLLEEQGIFLRASVVTASSGSALQYDTLISLMEHLKACAEIAAQRTVNWQKFCIKDDSVLYFLLQVSFLVDEGVSPVLLQLLSCALCGSKVLAALAAAGSSSATAASSAPVAASSGQAAAQSKSSTKKSKKEEKEKEKEGESSASQEDQLCTALVNQLNKFADKETLVQFLRCFLLESNSSSVRWQAHCLTLHIYRNSSKSQQELLLDLMWSIWPELPAYGRKAAQFVDLLGYFSLKTPQTEKKLKEYSQKAVEILRTQNHILTNHPNSNIYNTLSGLVEFDGYYLESDPCLVCNNPEVPFCYIKLSSIKVDTRYTTTQQVVKLIGSHTISKVTVKIGDLKRTKMVRTINLYYNNRTVQAIVELKNKPARWHKAKKVQLTPGQTEVKIDLPLPIVASNLMIEFADFYENYQASTETLQCPRCSASVPANPGVCGNCGENVYQCHKCRSINYDEKDPFLCNACGFCKYARFDFMLYAKPCCAVDPIENEEDRKKAVSNINTLLDKADRVYHQLMGHRPQLENLLCKVNEAAPEKPQDDSGTAGGISSTSASVNRYILQLAQEYCGDCKNSFDELSKIIQKVFASRKELLEYDLQQREAATKSSRTSVQPTFTASQYRALSVLGCGHTSSTKCYGCASAVTEHCITLLRALATNPALRHILVSQGLIELFDYNLRRGSAAMREEVRQLMCLLTRDNPEATQQMNDLIIGKVSTALKGHWANPDLASSLQYEMLLLTDSISKEDSCWELRLRCALSLFLMAVNIKTPVVVENITLMCLRILQKLIKPPAPTSKKNKDVPVEALTTVKPYCNEIHAQAQLWLKRDPKASYEAWKKCLPIRGIDGNGKSPSKTELRHLYLTEKYVWRWKQFLSRRGKRASPLDLKLGHNNWLRQVLFTPATQAARQAACTIVEALATIPSRKQQVLDLLTSYLDELSVAGECAAEYLALYQKLITSAHWKVYLAARGVLPYVGNLITKEIARLLALEEATLSTDLQQGYALKSLTGLLSSFVEVESIKRHFKSRLVGTVLNGYLCLRKLVVQRTKLIDETQDMLLEMLEDMTTGTESETKAFMAVCIETAKRYNLDDYRTPVFIFERLCSIIYPEENEVTEFFVTLEKDPQQEDFLQGRMPGNPYSSNEPGIGPLMRDIKNKICQDCDLVALLEDDSGMELLVNNKIISLDLPVAEVYKKVWCTTNEGEPMRIVYRMRGLLGDATEEFIESLDSTTDEEEDEEEVYKMAGVMAQCGGLECMLNRLAGIKDFKQGRHLLTVLLKLFSYCVKVKVNRQQLVKLEMNTLNVMLGTLNLALVAEQESKDSGGAAVAEQVLSIMEIILDESNAEPLSEDKGNLLLTGDKDQLVMLLDQINSTFVRSNPSVLQGLLRIIPYLSFGEVEKMQILVERFKPYCSFDKYDEDHSGDDKVFLDCFCKIAAGIKNNSNGHQLKDLILQKGITQSALDYMKKHIPSAKNLDADIWKKFLSRPALPFILRLLRGLAIQHPATQVLIGTDSITNLHKLEQVSSDEGIGTLAENLLEALREHPDVNKKIDAARRETRAEKKRMAMAMRQKALGTLGMTTNEKGQVVTKTALLKQMEELIEEPGLTCCICREGYKFQPTKVLGIYTFTKRVALEEMENKPRKQQGYSTVSHFNIVHYDCHLAAVRLARGREEWESAALQNANTKCNGLLPVWGPHVPESAFATCLARHNTYLQECTGQREPTYQLNIHDIKLLFLRFAMEQSFSADTGGGGRESNIHLIPYIIHTVLYVLNTTRATSREEKNLQGFLEQPKEKWVESAFEVDGPHYFTVLALHILPPEKWRATRVEILRRLLVTSQARAVAPGGATRLTDKAVKDYSVYRSSLLFWALVDLIYNMFKKVPTSNTEGGWSCSLAEYIRHNDMPIHEAADKALKAFQEEFMPVETFSEFLDAAGLLAEITDPESFLKDLLNSVP", "length": 5180, "header": "tr|F1SUQ5-1|F1SUQ5_PIG Isoform 1 of Ubiquitin protein ligase E3 component n-recognin 4 OS=Sus scrofa OX=9823 GN=UBR4 PE=1 SV=4 CANONICAL=F1SUQ5-1" }, "locus": { "chromosome": "6", "start_pos": 77707930, "end_pos": 77568730, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003874.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003874.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003786.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003786.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 20, "start_aa": "Thr", "end_pos": 20, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr20", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RES2", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RES2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 13, "go_terms": [ { "name": "response to oxidative stress", "id": "GO:0006979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006979", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "negative regulation of fatty acid biosynthetic process", "id": "GO:0045717", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045717", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "endosome organization", "id": "GO:0007032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007032", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "positive regulation of autophagy", "id": "GO:0010508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010508", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "protein K11-linked ubiquitination", "id": "GO:0070979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070979", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "protein K48-linked ubiquitination", "id": "GO:0070936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070936", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "protein K27-linked ubiquitination", "id": "GO:0044314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044314", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "cytoplasm protein quality control by the ubiquitin-proteasome system", "id": "GO:0071629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071629", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "ubiquitin-dependent protein catabolic process via the N-end rule pathway", "id": "GO:0071596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071596", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "HRI-mediated signaling", "id": "GO:0140468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140468", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "cytoplasm protein quality control", "id": "GO:0140455", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140455", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "negative regulation of HRI-mediated signaling", "id": "GO:0141191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141191", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" }, { "name": "protein branched polyubiquitination", "id": "GO:0141198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141198", "evidence": [ { "database": "UniProtKB", "id": "F1SUQ5", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1252, "end_pos": 1254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1417, "end_pos": 1419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1802, "end_pos": 1804, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1874, "end_pos": 1876, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2246, "end_pos": 2248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2320, "end_pos": 2322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2341, "end_pos": 2343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2342, "end_pos": 2344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2376, "end_pos": 2378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2452, "end_pos": 2454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2455, "end_pos": 2457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2554, "end_pos": 2556, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3418, "end_pos": 3420, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3436, "end_pos": 3438, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3594, "end_pos": 3596, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4008, "end_pos": 4010, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4599, "end_pos": 4601, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4668, "end_pos": 4670, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4999, "end_pos": 5001, "annotation": "n_glycosylation_sequon" }, { "start_pos": 714, "end_pos": 716, "annotation": "n_glycosylation_sequon" }, { "start_pos": 801, "end_pos": 803, "annotation": "n_glycosylation_sequon" }, { "start_pos": 820, "end_pos": 822, "annotation": "n_glycosylation_sequon" }, { "start_pos": 917, "end_pos": 919, "annotation": "n_glycosylation_sequon" }, { "start_pos": 990, "end_pos": 992, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUQ5" }, { "id": "PS51157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBR-type", "eco_id": "ECO_0000259", "start_pos": 1655, "end_pos": 1728, "start_aa": "Ser", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 20 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1252, "end_pos": 1254 }, { "start_pos": 1417, "end_pos": 1419 }, { "start_pos": 1802, "end_pos": 1804 }, { "start_pos": 1874, "end_pos": 1876 }, { "start_pos": 2246, "end_pos": 2248 }, { "start_pos": 2320, "end_pos": 2322 }, { "start_pos": 2341, "end_pos": 2343 }, { "start_pos": 2342, "end_pos": 2344 }, { "start_pos": 2376, "end_pos": 2378 }, { "start_pos": 2452, "end_pos": 2454 }, { "start_pos": 2455, "end_pos": 2457 }, { "start_pos": 2554, "end_pos": 2556 }, { "start_pos": 3418, "end_pos": 3420 }, { "start_pos": 3436, "end_pos": 3438 }, { "start_pos": 3594, "end_pos": 3596 }, { "start_pos": 4008, "end_pos": 4010 }, { "start_pos": 423, "end_pos": 425 }, { "start_pos": 4599, "end_pos": 4601 }, { "start_pos": 4668, "end_pos": 4670 }, { "start_pos": 4999, "end_pos": 5001 }, { "start_pos": 714, "end_pos": 716 }, { "start_pos": 801, "end_pos": 803 }, { "start_pos": 820, "end_pos": 822 }, { "start_pos": 917, "end_pos": 919 }, { "start_pos": 990, "end_pos": 992 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STY8-1", "uniprot_ac": "F1STY8", "uniprot_id": "F1STY8_PIG", "mass": { "chemical_mass": 157114.0, "monoisotopic_mass": 157114.0 }, "refseq": {}, "gene_names": [ { "name": "RSF1", "type": "recommended", "evidence": [ { "id": "F1STY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ] } ], "protein_names": [ { "name": "Remodeling and spacing factor 1", "type": "synonym", "evidence": [ { "id": "F1STY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STY8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RSF1", "url": "https://www.uniprot.org/uniprotkb/F1STY8", "locus": { "chromosome": "9", "start_pos": 12121825, "end_pos": 12278120, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014882", "url": "https://www.ensembl.org/id/ENSSSCG00000014882" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014882", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014882", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15543", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15543", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14296", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14296", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14296:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14296:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-606279", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A5G2RMY9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMY9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5G2RMY9-1", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMY9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STY8-1", "url": "https://www.uniprot.org/uniprotkb/F1STY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAAAAAAMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPSPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEEETPKQEEQKENEKTKSEEQPIDSENCSTPNAVEETTVKIEKEDLKELIKLPVIVKLEKPLPESEEKKTIKEENDSFKENVKPVKVEVKECRADPRDVKGSLERLEPERSDPGGNVKSSQEATEKSTEETEKLKNDQQAKIPLKKREIKLSDDFDSPIKGPLCKSVTPTKEFLKDELKQEEETCRRISAITTLGHEGKQLVNGEVSDEKVTPNFKTEQMDVKFYDTKEESCSSSKDRNVLMEGNGAESLNSVITSMKIGDLEREMVPLGKDADSSVSVLETQCQKRHIEETDPPEMETSLETSEMAKDLSLKTALSTTESYSMKIEEKSPKSKKDKRSPVLECLEKSKKTFLDKDTQRLSPIPEEVPKNTVESVKAGSPKAAELSPSSSMTGHCEKLASEKEVVECPGSTGGQSLEKIDPEIQKVDSESTKVEVDNQDSAQASGTSDPPEGKGSGQKSKIKYKLIPEEETTASENTEITSERQKEGIKLTIRISSRKKKPESPPKILEPETKPEKTEKEEEKTNVGRTLRRSPRISRPTAKVAEIRDQKADKKRAEEDELEEESAPLQKTDKKENLKKIDKDTNAKVTKVKPKGKVRWTGSRTRGRWKYSSNDESEGSDRRKESEEAILADDDEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKSVLNAGIVICEPDFSEDHEKRKKIQKNPKFDEFDEAIDEAIEDDIKEADGGGVGRGKDISTITGHRGKDISTILDEERKENKRPQRAAAARRKKRRRLNDLDSDSNLDEEESEDEFKISDGSQDEFVVSDENPDESEEDPPSNDDSDTDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEESEENSRDSESDFSDDFSDDFVETRRRRSRRNQKRQINYKEDSESDGSQKSLRRGKEIRRVHKRRLSSSESEESYMSKNSEDDELAKKSKRSVRKRGRSTDEYSEADEDEEEEGKPSRKRLHRIETDEEESCDNAHGDAAQPARDSQPRVLPAEQESTKRPYRIDSDEEEDFENVSKVESPLDYSLVDLPSTNGQSPGKAIENLIGKPAEKPQTPKDSSTASASLAPNGTSGGQEAGAPEEEEDELLRVTDLVDYVCNSEQL", "length": 1388, "header": "tr|F1STY8-1|F1STY8_PIG Isoform 1 of Remodeling and spacing factor 1 OS=Sus scrofa OX=9823 GN=RSF1 PE=1 SV=4 CANONICAL=F1STY8-1" }, "isoforms": [ { "isoform_ac": "A0A5G2RMY9-1", "url": "https://www.uniprot.org/uniprotkb/F1STY8/entry#A0A5G2RMY9-1", "sequence": { "sequence": "MAAAAAAAAAMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPSPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEEETPKQEEQKENEKTKSEEQPIDSENCSTPNAVEETTVKIEKEDLKELIKLPVIVKLEKPLPESEEKKTIKEENDSFKENVKPVKVEVKECRADPRDVKGSLERLEPERSDPGGNVKSSQEATEKSTEETEKLKNDQQAKIPLKKREIKLSDDFDSPIKGPLCKSVTPTKEFLKDELKQEEETCRRISAITTLGHEGKQLVNGEVSDEKVTPNFKTEQMDVKFYDTKEESCSSSKDRNVLMEGNGAESLNSVITSMKIGDLEREMVPLGKDADSSVSVLETQCQKRHIEETDPPEMETSLETSEMAKDLSLKTALSTTESYSMKIEEKSPKSKKDKRSPVLECLEKSKKTFLDKDTQRLSPIPEEVPKNTVESVKAGSPKAAELSPSSSMTGHCEKLASEKEVVECPGSTGGQSLEKIDPEIQKVDSESTKVEVDNQDSAQASGTSDPPEGKGSGQKSKIKYKLIPEEETTASENTEITSERQKEGIKLTIRISSRKKKPESPPKILEPETKPEKTEKEEEKTNVGRTLRRSPRISRPTAKVAEIRDQKADKKRAEEDELEEESAPLQKTDKKENLKKIDKDTNAKVTKVKPKGKVRWTGSRTRGRWKYSSNDESEGSDRRKESEEAILADDDEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQFDEFDEAIDEAIEDDIKEADGGGVGRGKDISTITGHRGKDISTILDEERKENKRPQRAAAARRKKRRRLNDLDSDSNLDEEESEDEFKISDGSQDEFVVSDENPDESEEDPPSNDDSDTDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEESEENSRDSESDFSDDFSDDFVETRRRRSRRNQKRQINYKEDSESDGSQKSLRRGKEIRRVHKRRLSSSESEESYMSKNSEDDELAKKSKRSVRKRGRSTDEYSEADEDEEEEGKPSRKRLHRIETDEEESCDNAHGDAAQPARDSQPRVLPAEQESTKRPYRIDSDEEEDFENVSKVESPLDYSLVDLPSTNGQSPGKAIENLIGKPAEKPQTPKDSSTASASLAPNGTSGGQEAGAPEEEEDELLRVTDLVDYVCNSEQL", "length": 1337, "header": "tr|A0A5G2RMY9-1|F1STY8_PIG Computationally mapped isoform of Remodeling and spacing factor 1 OS=Sus scrofa OX=9823 GN=RSF1 PE=1 SV=1 CANONICAL=F1STY8-1" }, "locus": { "chromosome": "9", "start_pos": 12278109, "end_pos": 12128811, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000090736.1", "url": "https://www.ensembl.org/id/ENSSSCT00000090736.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074075.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074075.1" } ] } }, { "isoform_ac": "F1STY8-1", "url": "https://www.uniprot.org/uniprotkb/F1STY8/entry#F1STY8-1", "sequence": { "sequence": "MAAAAAAAAAMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPSPDVGNGEVPKELVELHLKLMRKIGKSVTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEEETPKQEEQKENEKTKSEEQPIDSENCSTPNAVEETTVKIEKEDLKELIKLPVIVKLEKPLPESEEKKTIKEENDSFKENVKPVKVEVKECRADPRDVKGSLERLEPERSDPGGNVKSSQEATEKSTEETEKLKNDQQAKIPLKKREIKLSDDFDSPIKGPLCKSVTPTKEFLKDELKQEEETCRRISAITTLGHEGKQLVNGEVSDEKVTPNFKTEQMDVKFYDTKEESCSSSKDRNVLMEGNGAESLNSVITSMKIGDLEREMVPLGKDADSSVSVLETQCQKRHIEETDPPEMETSLETSEMAKDLSLKTALSTTESYSMKIEEKSPKSKKDKRSPVLECLEKSKKTFLDKDTQRLSPIPEEVPKNTVESVKAGSPKAAELSPSSSMTGHCEKLASEKEVVECPGSTGGQSLEKIDPEIQKVDSESTKVEVDNQDSAQASGTSDPPEGKGSGQKSKIKYKLIPEEETTASENTEITSERQKEGIKLTIRISSRKKKPESPPKILEPETKPEKTEKEEEKTNVGRTLRRSPRISRPTAKVAEIRDQKADKKRAEEDELEEESAPLQKTDKKENLKKIDKDTNAKVTKVKPKGKVRWTGSRTRGRWKYSSNDESEGSDRRKESEEAILADDDEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKSVLNAGIVICEPDFSEDHEKRKKIQKNPKFDEFDEAIDEAIEDDIKEADGGGVGRGKDISTITGHRGKDISTILDEERKENKRPQRAAAARRKKRRRLNDLDSDSNLDEEESEDEFKISDGSQDEFVVSDENPDESEEDPPSNDDSDTDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEESEENSRDSESDFSDDFSDDFVETRRRRSRRNQKRQINYKEDSESDGSQKSLRRGKEIRRVHKRRLSSSESEESYMSKNSEDDELAKKSKRSVRKRGRSTDEYSEADEDEEEEGKPSRKRLHRIETDEEESCDNAHGDAAQPARDSQPRVLPAEQESTKRPYRIDSDEEEDFENVSKVESPLDYSLVDLPSTNGQSPGKAIENLIGKPAEKPQTPKDSSTASASLAPNGTSGGQEAGAPEEEEDELLRVTDLVDYVCNSEQL", "length": 1388, "header": "tr|F1STY8-1|F1STY8_PIG Isoform 1 of Remodeling and spacing factor 1 OS=Sus scrofa OX=9823 GN=RSF1 PE=1 SV=4 CANONICAL=F1STY8-1" }, "locus": { "chromosome": "9", "start_pos": 12278109, "end_pos": 12128811, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016236.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016236.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015802.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015802.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5G2RMY9", "url": "https://www.uniprot.org/uniprotkb/A0A5G2RMY9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-606279", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "resource": "Reactome", "description": "Deposition of new CENPA-containing nucleosomes at the centromere" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" }, { "name": "histone octamer slider activity", "id": "GO:0140751", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140751", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" }, { "name": "nucleosome assembly", "id": "GO:0006334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006334", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" }, { "name": "DNA-templated transcription initiation", "id": "GO:0006352", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006352", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" }, { "name": "positive regulation of viral transcription", "id": "GO:0050434", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050434", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" }, { "name": "heterochromatin formation", "id": "GO:0031507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031507", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "RSF complex", "id": "GO:0031213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031213", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1STY8", "url": "https://www.uniprot.org/uniprotkb/F1STY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1300, "end_pos": 1302, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1354, "end_pos": 1356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 222, "end_pos": 224, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 312, "end_pos": 314, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STY8" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 871, "end_pos": 921, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1300, "end_pos": 1302 }, { "start_pos": 1354, "end_pos": 1356 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 222, "end_pos": 224 }, { "start_pos": 264, "end_pos": 266 }, { "start_pos": 312, "end_pos": 314 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z555-1", "uniprot_ac": "F2Z555", "uniprot_id": "F2Z555_PIG", "mass": { "chemical_mass": 21508.0, "monoisotopic_mass": 21508.0 }, "refseq": { "ac": "XP_003131456", "name": "NF-kappa-B inhibitor-interacting Ras-like protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131456" }, "gene_names": [ { "name": "NKIRAS2", "type": "recommended", "evidence": [ { "id": "F2Z555", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z555" } ] }, { "name": "NKIRAS2", "type": "synonym", "evidence": [ { "id": "XP_003131456", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131456" } ] } ], "protein_names": [ { "name": "NF-kappa-B inhibitor-interacting Ras-like protein 2", "type": "recommended", "evidence": [ { "id": "F2Z555", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z555/entry#names_and_taxonomy" } ] }, { "name": "I-kappa-B-interacting Ras-like protein 2", "type": "synonym", "evidence": [ { "id": "F2Z555", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z555/entry#names_and_taxonomy" } ] }, { "name": "NF-kappa-B inhibitor-interacting Ras-like protein 2", "type": "synonym", "evidence": [ { "id": "XP_003131456", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131456" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z555", "url": "https://www.uniprot.org/uniprotkb/F2Z555" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NKIRAS2", "url": "https://www.uniprot.org/uniprotkb/F2Z555", "locus": { "chromosome": "12", "start_pos": 20717547, "end_pos": 20723704, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017418", "url": "https://www.ensembl.org/id/ENSSSCG00000017418" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017418", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017418", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00882", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00882", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100524706", "url": "https://www.ncbi.nlm.nih.gov/gene/100524706", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524706", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524706", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IMDRANN", "url": "https://omabrowser.org/oma/group/IMDRANN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z555", "url": "https://www.orthodb.org/?gene=F2Z555", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46152", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46152", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46152:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46152:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1810476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1810476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-445989", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-445989", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-933542", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-933542", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003131456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003131456", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A5K1UD81", "url": "https://www.uniprot.org/uniprotkb/A0A5K1UD81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A5K1UD81-1", "url": "https://www.uniprot.org/uniprotkb/A0A5K1UD81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z555", "url": "https://www.uniprot.org/uniprotkb/F2Z555", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z555-1", "url": "https://www.uniprot.org/uniprotkb/F2Z555-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPLSRKNKGSGSLDG", "length": 191, "header": "tr|F2Z555-1|F2Z555_PIG Isoform 1 of NF-kappa-B inhibitor-interacting Ras-like protein 2 OS=Sus scrofa OX=9823 GN=NKIRAS2 PE=1 SV=1 CANONICAL=F2Z555-1" }, "isoforms": [ { "isoform_ac": "A0A5K1UD81-1", "url": "https://www.uniprot.org/uniprotkb/F2Z555/entry#A0A5K1UD81-1", "sequence": { "sequence": "MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQHGQPRVLSARGAAQEGDRQIQGQEGGHHRGPRQQV", "length": 91, "header": "tr|A0A5K1UD81-1|F2Z555_PIG Computationally mapped isoform of NF-kappa-B inhibitor-interacting Ras-like protein 2 OS=Sus scrofa OX=9823 GN=NKIRAS2 PE=1 SV=1 CANONICAL=F2Z555-1" }, "locus": { "chromosome": "12", "start_pos": 20721471, "end_pos": 20719466, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031218.3", "url": "https://www.ensembl.org/id/ENSSSCT00000031218.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025800.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025800.3" } ] } }, { "isoform_ac": "F2Z555-1", "url": "https://www.uniprot.org/uniprotkb/F2Z555/entry#F2Z555-1", "sequence": { "sequence": "MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPLSRKNKGSGSLDG", "length": 191, "header": "tr|F2Z555-1|F2Z555_PIG Isoform 1 of NF-kappa-B inhibitor-interacting Ras-like protein 2 OS=Sus scrofa OX=9823 GN=NKIRAS2 PE=1 SV=1 CANONICAL=F2Z555-1" }, "locus": { "chromosome": "12", "start_pos": 20721471, "end_pos": 20719258, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018962.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018962.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018457.2", "url": "https://www.ensembl.org/id/ENSSSCP00000018457.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A5K1UD81", "url": "https://www.uniprot.org/uniprotkb/A0A5K1UD81" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524706", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524706", "resource": "KEGG Pathway" }, { "id": "R-SSC-1810476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1810476", "resource": "Reactome", "description": "RIP-mediated NFkB activation via ZBP1" }, { "id": "R-SSC-445989", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-445989", "resource": "Reactome", "description": "TAK1-dependent IKK and NF-kappa-B activation" }, { "id": "R-SSC-933542", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-933542", "resource": "Reactome", "description": "TRAF6 mediated NF-kB activation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HLV9-1", "protein_name": "NF-kappa-B inhibitor-interacting Ras-like protein 2", "gene_name": "Nkiras2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFIYLASKMTQPQSKSAFPLSRKNKGSGSLDG", "length": 191 }, "evidence": [ { "id": "F2Z555", "url": "https://omabrowser.org/oma/group/F2Z555/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5ZJW6-1", "protein_name": "NF-kappa-B inhibitor-interacting Ras-like protein 2", "gene_name": "NKIRAS2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGKSCKVVVCGQAAVGKTAILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGLELPKHCFSCTDGYVLVYSTDSKESFRRVELLKKEIDKCKDKKEVTIVVLGNKCDLQEQRRVDHDAAQHWAKGEKVKLWEVSVADRRTLIEPFIYLASKMTQPQSKSAFPLSRKNKGSGSVDG", "length": 191 }, "evidence": [ { "id": "F2Z555", "url": "https://omabrowser.org/oma/group/F2Z555/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9CR56-1", "protein_name": "NF-kappa-B inhibitor-interacting Ras-like protein 2", "gene_name": "Nkiras2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGAELPKHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFIYLASKMTQPQSKSAFPLSRKNKGSGSLDG", "length": 191 }, "evidence": [ { "id": "F2Z555", "url": "https://omabrowser.org/oma/group/F2Z555/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NYR9-1", "protein_name": "NF-kappa-B inhibitor-interacting Ras-like protein 2", "gene_name": "NKIRAS2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGAELPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVAQHWAKSEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPLSRKNKGSGSLDG", "length": 191 }, "evidence": [ { "id": "F2Z555", "url": "https://omabrowser.org/oma/group/F2Z555/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F2Z555", "url": "https://www.uniprot.org/uniprotkb/F2Z555" } ], "pmid": "" }, { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F2Z555", "url": "https://www.uniprot.org/uniprotkb/F2Z555" } ], "pmid": "" }, { "name": "GTPase activating protein binding", "id": "GO:0032794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032794", "evidence": [ { "database": "UniProtKB", "id": "F2Z555", "url": "https://www.uniprot.org/uniprotkb/F2Z555" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z555", "url": "https://www.uniprot.org/uniprotkb/F2Z555" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "negative regulation of canonical NF-kappaB signal transduction", "id": "GO:0043124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043124", "evidence": [ { "database": "UniProtKB", "id": "F2Z555", "url": "https://www.uniprot.org/uniprotkb/F2Z555" } ], "pmid": "" }, { "name": "Ral protein signal transduction", "id": "GO:0032484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032484", "evidence": [ { "database": "UniProtKB", "id": "F2Z555", "url": "https://www.uniprot.org/uniprotkb/F2Z555" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS75-1", "uniprot_ac": "F1SS75", "uniprot_id": "F1SS75_PIG", "mass": { "chemical_mass": 48985.0, "monoisotopic_mass": 48985.0 }, "refseq": {}, "gene_names": [ { "name": "CIART", "type": "recommended", "evidence": [ { "id": "F1SS75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS75" } ] } ], "protein_names": [ { "name": "Circadian associated repressor of transcription", "type": "synonym", "evidence": [ { "id": "F1SS75", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS75/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS75", "url": "https://www.uniprot.org/uniprotkb/F1SS75" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CIART", "url": "https://www.uniprot.org/uniprotkb/F1SS75", "locus": { "chromosome": "4", "start_pos": 98800931, "end_pos": 98804739, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000038374", "url": "https://www.ensembl.org/id/ENSSSCG00000038374" } ] } } ], "crossref": [ { "id": "ENSSSCG00000038374", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038374", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156195", "url": "https://www.ncbi.nlm.nih.gov/gene/100156195", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156195", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156195", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8D0MAD6", "url": "https://www.orthodb.org/?gene=A0A8D0MAD6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "F1SS75", "url": "https://www.orthodb.org/?gene=F1SS75", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35441", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35441", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35441:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35441:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15673", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15673", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020945571", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020945571", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D0MAD6", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MAD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0MAD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MAD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS75", "url": "https://www.uniprot.org/uniprotkb/F1SS75", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS75-1", "url": "https://www.uniprot.org/uniprotkb/F1SS75-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFSIVPETGNFGEGEKSYYYSTQYTPVSPSISQSLDSGFKLPRFALQLQVPIFGYSGSCSPASASEPMDSPSSVSSYSSYSLSSSFSTSPVNSDFGFPSDSEGEDKWAHGPRPDTVESRGGSRPSPGPIRCRQRPKVSSNQHTASHLEQRGLASSMAGSGVKRSRDGEVEPSLNIHGCTTEGDLLFAQKCKELQGFIRPLTDLLNGLKMGRFERGLSSFQQSVAMDRIQRIVGVLQKPQMGERYLATLLQVEGMLKIWFPHIAAQKSSLGSSRHQLTKHFPSHHSYPAASSPSPPMERMDHTQLRQLVLKPKQPWHLTELPAMNLTWIHTTPICNPPLSSPGAISFSHGPLGTGTSIGVILFLQHGVQPFAHSALATPVPSTTASPVTPGDPKKLSGEGPCCHSLPVTLPSDWNCNPSPPGLPVVTREMTIGHLEQMRSHPPVAPDVHPLNP", "length": 453, "header": "tr|F1SS75-1|F1SS75_PIG Isoform 1 of Circadian associated repressor of transcription OS=Sus scrofa OX=9823 GN=CIART PE=4 SV=2 CANONICAL=F1SS75-1" }, "isoforms": [ { "isoform_ac": "A0A8D0MAD6-1", "url": "https://www.uniprot.org/uniprotkb/F1SS75/entry#A0A8D0MAD6-1", "sequence": { "sequence": "MQVRRLRGQLQVPIFGYSGSCSPASASEPMDSPSSVSSYSSYSLSSSFSTSPVNSDFGFPSDSEGEDKWAHGPRPDTVESRGGSRPSPGPIRCRQRPKVSSNQHTASHLEQRGLASSMAGSGVKRSRDGEVEPSLNIHGCTTEGDLLFAQKCKELQGFIRPLTDLLNGLKMGRFERGLSSFQQSVAMDRIQRIVGVLQKPQMGERYLATLLQVEGMLKIWFPHIAAQKSSLGSSRHQLTKHFPSHHSYPAASSPSPPMERMDHTQLRQLVLKPKQPWHLTELPAMNLTWIHTTPICNPPLSSPGAISFSHGPLGTGTSIGVILFLQHGVQPFAHSALATPVPSTTASPVTPGDPKKLSGEGPCCHSLPVTLPSDWNCNPSPPGLPVVTREMTIGHLEQMRSHPPVAPDVHPLNP", "length": 414, "header": "tr|A0A8D0MAD6-1|F1SS75_PIG Computationally mapped isoform of Circadian associated repressor of transcription OS=Sus scrofa OX=9823 GN=CIART PE=4 SV=1 CANONICAL=F1SS75-1" }, "locus": { "chromosome": "4", "start_pos": 98804702, "end_pos": 98800993, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000060285.3", "url": "https://www.ensembl.org/id/ENSSSCT00000060285.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000050673.1", "url": "https://www.ensembl.org/id/ENSSSCP00000050673.1" } ] } }, { "isoform_ac": "F1SS75-1", "url": "https://www.uniprot.org/uniprotkb/F1SS75/entry#F1SS75-1", "sequence": { "sequence": "MSFSIVPETGNFGEGEKSYYYSTQYTPVSPSISQSLDSGFKLPRFALQLQVPIFGYSGSCSPASASEPMDSPSSVSSYSSYSLSSSFSTSPVNSDFGFPSDSEGEDKWAHGPRPDTVESRGGSRPSPGPIRCRQRPKVSSNQHTASHLEQRGLASSMAGSGVKRSRDGEVEPSLNIHGCTTEGDLLFAQKCKELQGFIRPLTDLLNGLKMGRFERGLSSFQQSVAMDRIQRIVGVLQKPQMGERYLATLLQVEGMLKIWFPHIAAQKSSLGSSRHQLTKHFPSHHSYPAASSPSPPMERMDHTQLRQLVLKPKQPWHLTELPAMNLTWIHTTPICNPPLSSPGAISFSHGPLGTGTSIGVILFLQHGVQPFAHSALATPVPSTTASPVTPGDPKKLSGEGPCCHSLPVTLPSDWNCNPSPPGLPVVTREMTIGHLEQMRSHPPVAPDVHPLNP", "length": 453, "header": "tr|F1SS75-1|F1SS75_PIG Isoform 1 of Circadian associated repressor of transcription OS=Sus scrofa OX=9823 GN=CIART PE=4 SV=2 CANONICAL=F1SS75-1" }, "locus": { "chromosome": "4", "start_pos": 98804272, "end_pos": 98800993, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007292.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007292.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007097.3", "url": "https://www.ensembl.org/id/ENSSSCP00000007097.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 389, "start_aa": "Thr", "end_pos": 389, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr389", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0MAD6", "url": "https://www.uniprot.org/uniprotkb/A0A8D0MAD6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156195", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156195", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transcription cis-regulatory region binding", "id": "GO:0000976", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000976", "evidence": [ { "database": "UniProtKB", "id": "F1SS75", "url": "https://www.uniprot.org/uniprotkb/F1SS75" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SS75", "url": "https://www.uniprot.org/uniprotkb/F1SS75" } ], "pmid": "" }, { "name": "E-box binding", "id": "GO:0070888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070888", "evidence": [ { "database": "UniProtKB", "id": "F1SS75", "url": "https://www.uniprot.org/uniprotkb/F1SS75" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "circadian regulation of gene expression", "id": "GO:0032922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032922", "evidence": [ { "database": "UniProtKB", "id": "F1SS75", "url": "https://www.uniprot.org/uniprotkb/F1SS75" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1SS75", "url": "https://www.uniprot.org/uniprotkb/F1SS75" } ], "pmid": "" }, { "name": "locomotor rhythm", "id": "GO:0045475", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045475", "evidence": [ { "database": "UniProtKB", "id": "F1SS75", "url": "https://www.uniprot.org/uniprotkb/F1SS75" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SS75", "url": "https://www.uniprot.org/uniprotkb/F1SS75" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 325, "end_pos": 327, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 389 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 325, "end_pos": 327 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQH0-1", "uniprot_ac": "F1SQH0", "uniprot_id": "F1SQH0_PIG", "mass": { "chemical_mass": 27510.0, "monoisotopic_mass": 27510.0 }, "refseq": { "ac": "XP_003481269", "name": "uncharacterized protein C2orf61 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481269" }, "gene_names": [ { "name": "STPG4", "type": "recommended", "evidence": [ { "id": "F1SQH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ] }, { "name": "STPG4", "type": "synonym", "evidence": [ { "id": "XP_003481269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481269" } ] } ], "protein_names": [ { "name": "Sperm-tail PG-rich repeat containing 4", "type": "synonym", "evidence": [ { "id": "F1SQH0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQH0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C2orf61 homolog", "type": "synonym", "evidence": [ { "id": "XP_003481269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481269" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STPG4", "url": "https://www.uniprot.org/uniprotkb/F1SQH0", "locus": { "chromosome": "3", "start_pos": 93438849, "end_pos": 93389812, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000063378", "url": "https://www.ensembl.org/id/ENSSSCG00000063378" } ] } } ], "crossref": [ { "id": "F1SQH0", "url": "https://alphafold.ebi.ac.uk/entry/F1SQH0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008433", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008433", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522546", "url": "https://www.ncbi.nlm.nih.gov/gene/100522546", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010736", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010736", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522546", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522546", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQH0", "url": "https://www.orthodb.org/?gene=F1SQH0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35678", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35678", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35678:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35678:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481269", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481269", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D0V7Z1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0V7Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D0V7Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0V7Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQH0-1", "url": "https://www.uniprot.org/uniprotkb/F1SQH0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEQPTITVTSTAVREDLRRGHCGSLASKPTQKTSSLEREGWWRIALTNTPNPGTYHLKTFIEESLLNPVIATYGFKNEGRGKPPLVQRNDPVPNDLPQYMPPDFLDLLKKQIATYSFKDKPRSSPSTLVYRDQSVKLSPGQYDLLPAPVPKYASRSFIFRSTVQRFPTGCFTPREGPGPGHYDLKIPMASSVTSCFQSRVPRFLPPCSKTPGPGAYTSSAQFPRQPRTVAKMGREHSLFFNNTIGF", "length": 246, "header": "tr|F1SQH0-1|F1SQH0_PIG Isoform 1 of Sperm-tail PG-rich repeat containing 4 OS=Sus scrofa OX=9823 GN=STPG4 PE=1 SV=3 CANONICAL=F1SQH0-1" }, "isoforms": [ { "isoform_ac": "A0A8D0V7Z1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQH0/entry#A0A8D0V7Z1-1", "sequence": { "sequence": "MRPCVLPVHPRSHDTILSLGLERNMCVHTDLKNDVTPPQNTPNPGTYHLKTFIEESLLNPVIATYGFKNEGRGKPPLVQRNDPVPNDLPQYMPPDFLDLLKKQIATYSFKDKPRSSPSTLVYRDQSVKLSPGQYDLLPAPVPKYREGPGPGHYDLKIPMASSVTSCFQSRVPRFLPPCSKTPGPGAYTSSAQFPRQPRTVAKMGREHSLFFNNTIGF", "length": 217, "header": "tr|A0A8D0V7Z1-1|F1SQH0_PIG Computationally mapped isoform of Sperm-tail PG-rich repeat containing 4 OS=Sus scrofa OX=9823 GN=STPG4 PE=1 SV=1 CANONICAL=F1SQH0-1" }, "locus": { "chromosome": "3", "start_pos": 93437855, "end_pos": 93393484, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000087158.2", "url": "https://www.ensembl.org/id/ENSSSCT00000087158.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000060120.1", "url": "https://www.ensembl.org/id/ENSSSCP00000060120.1" } ] } }, { "isoform_ac": "F1SQH0-1", "url": "https://www.uniprot.org/uniprotkb/F1SQH0/entry#F1SQH0-1", "sequence": { "sequence": "MEQPTITVTSTAVREDLRRGHCGSLASKPTQKTSSLEREGWWRIALTNTPNPGTYHLKTFIEESLLNPVIATYGFKNEGRGKPPLVQRNDPVPNDLPQYMPPDFLDLLKKQIATYSFKDKPRSSPSTLVYRDQSVKLSPGQYDLLPAPVPKYASRSFIFRSTVQRFPTGCFTPREGPGPGHYDLKIPMASSVTSCFQSRVPRFLPPCSKTPGPGAYTSSAQFPRQPRTVAKMGREHSLFFNNTIGF", "length": 246, "header": "tr|F1SQH0-1|F1SQH0_PIG Isoform 1 of Sperm-tail PG-rich repeat containing 4 OS=Sus scrofa OX=9823 GN=STPG4 PE=1 SV=3 CANONICAL=F1SQH0-1" }, "locus": { "chromosome": "3", "start_pos": 93437855, "end_pos": 93390011, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009233.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009233.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008999.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008999.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D0V7Z1", "url": "https://www.uniprot.org/uniprotkb/A0A8D0V7Z1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522546", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522546", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ], "pmid": "" }, { "name": "female pronucleus", "id": "GO:0001939", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001939", "evidence": [ { "database": "UniProtKB", "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ], "pmid": "" }, { "name": "male pronucleus", "id": "GO:0001940", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001940", "evidence": [ { "database": "UniProtKB", "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ], "pmid": "" }, { "name": "germinal vesicle", "id": "GO:0042585", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042585", "evidence": [ { "database": "UniProtKB", "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ], "pmid": "" }, { "name": "histone binding", "id": "GO:0042393", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042393", "evidence": [ { "database": "UniProtKB", "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "epigenetic programing of male pronucleus", "id": "GO:0044727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044727", "evidence": [ { "database": "UniProtKB", "id": "F1SQH0", "url": "https://www.uniprot.org/uniprotkb/F1SQH0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQH0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 246, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQH0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQH0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 241, "end_pos": 243 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS42-1", "uniprot_ac": "F1SS42", "uniprot_id": "F1SS42_PIG", "mass": { "chemical_mass": 86518.0, "monoisotopic_mass": 86518.0 }, "refseq": { "ac": "XP_001928692", "name": "AP-1 complex subunit gamma-like 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928692" }, "gene_names": [ { "name": "AP1G2", "type": "recommended", "evidence": [ { "id": "F1SS42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS42" } ] }, { "name": "AP1G2", "type": "synonym", "evidence": [ { "id": "XP_001928692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928692" } ] } ], "protein_names": [ { "name": "AP-1 complex subunit gamma", "type": "recommended", "evidence": [ { "id": "F1SS42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS42/entry#names_and_taxonomy" } ] }, { "name": "AP-1 complex subunit gamma-like 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001928692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928692" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS42", "url": "https://www.uniprot.org/uniprotkb/F1SS42" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AP1G2", "url": "https://www.uniprot.org/uniprotkb/F1SS42", "locus": { "chromosome": "7", "start_pos": 75549488, "end_pos": 75533202, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002015", "url": "https://www.ensembl.org/id/ENSSSCG00000002015" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002015", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002015", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157682", "url": "https://www.ncbi.nlm.nih.gov/gene/100157682", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002553", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002553", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013041", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013041", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157682", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157682", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "REPNTKK", "url": "https://omabrowser.org/oma/group/REPNTKK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SS42", "url": "https://www.orthodb.org/?gene=F1SS42", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22780", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22780", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01602", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01602", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02883", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02883", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-432720", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432720", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001928692", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928692", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D1N387", "url": "https://www.uniprot.org/uniprotkb/A0A8D1N387", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D1N387-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D1N387-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS42", "url": "https://www.uniprot.org/uniprotkb/F1SS42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS42-1", "url": "https://www.uniprot.org/uniprotkb/F1SS42-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVSSLKLQELIQEIREAKTQAQEREVIQKECAHIRASFRDGDPLHRHRQLAKLLYVHMLGYPAHFGQMECLKLIASPRFTDKRVGYLGAMLLLDERQDAHLLITNSIKNDLSQGIQAIQGLALCTLSTMGSAEMCRDLANEVEKLLLQPSPYVRKKAVLTAVHMIRKVPELSNLFLPPCAQLLRERHHGILLGTITLITELCERSPAALKHFRKVVPQLVHILRSLVTTGYSTEHSISGVSDPFLQVQILRLLRILGQNHEESSETMNDLLAQVATNTNTSRNAGSAVLFETVLTILDIRSAAGLRVLAVNILGRFLLNSDRNIRYVALMSLLRLVQSDHSAVQRHRPTVVDCLRDPDASLSRRALELSLALVNSSNVRAMTQELQGFLESCPPDLRATCASGILLAAERFAPSKRWHIDTILHVLTTAGAYVRDDAVANLTQLIGGAQELHAYSVRRLYSALAKDISQQPLVQVAAWCIGEYGDLLLEGSCEEAEPLQVEEEEVLALLERVLQSHMSLPATRGYALTALMKLSTRLRGDNNRIRQVVSIYGSCMDVELQQRAVEYNTLFRKYDHMRAAILEKMPLMERGGPQVDEKAKESEEEEAAPNPTEPQASKLLDLLDLLDGPSADAHHPPPLDPTPGGTLINLLDLPCAPPPPAPIPNLRVFEREGLQLNLSFVRPPGTPALLLITVTATNTSAGDVTHFICQAAVPKSFQLQLQAPSGDTVPAQGGLPMTQLLRILNPNKAPLRLKLRLTYNHFGQSVQEIFEVNNLPVETWQ", "length": 781, "header": "tr|F1SS42-1|F1SS42_PIG Isoform 1 of AP-1 complex subunit gamma OS=Sus scrofa OX=9823 GN=AP1G2 PE=3 SV=3 CANONICAL=F1SS42-1" }, "isoforms": [ { "isoform_ac": "A0A8D1N387-1", "url": "https://www.uniprot.org/uniprotkb/F1SS42/entry#A0A8D1N387-1", "sequence": { "sequence": "MVVSSLKLQELIQEIREAKTQAQEREVIQKECAHIRASFRDGDPLHRHRQLAKLLYVHMLGYPAHFGQVVPQLVHILRSLVTTGYSTEHSISGVSDPFLQVQILRLLRILGQNHEESSETMNDLLAQVATNTNTSRNAGSAVLFETVLTILDIRSAAGLRVLAVNILGRFLLNSDRNIRYVALMSLLRLVQSDHSAVQRHRPTVVDCLRDPDASLSRRALELSLALVNSSNVRAMTQELQGFLESCPPDLRATCASGILLAAERFAPSKRWHIDTILHVLTTAGAYVRDDAVANLTQLIGGAQELHAYSVRRLYSALAKDISQQPLVQVAAWCIGEYGDLLLEGSCEEAEPLQVEEEEVLALLERVLQSHMSLPATRGYALTALMKLSTRLRGDNNRIRQVVSIYGSCMDVELQQRAVEYNTLFRKYDHMRAAILEKMPLMERGGPQVDEKAKESEEEEAAPNPTEPQASKLLDLLDLLDGPSADAHHPPPLDPTPGGTLINLLDLPCAPPPPAPIPNLRVFEREGLQLNLSFVRPPGTPALLLITVTATNTSAGDVTHFICQAAVPKSFQLQLQAPSGDTVPAQGGLPMTQLLRILNPNKAPLRLKLRLTYNHFGQSVQEIFEVNNLPVETWQ", "length": 634, "header": "tr|A0A8D1N387-1|F1SS42_PIG Computationally mapped isoform of AP-1 complex subunit gamma OS=Sus scrofa OX=9823 GN=AP1G2 PE=3 SV=1 CANONICAL=F1SS42-1" }, "locus": { "chromosome": "7", "start_pos": 75549305, "end_pos": 75533721, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000066171.3", "url": "https://www.ensembl.org/id/ENSSSCT00000066171.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000058154.1", "url": "https://www.ensembl.org/id/ENSSSCP00000058154.1" } ] } }, { "isoform_ac": "F1SS42-1", "url": "https://www.uniprot.org/uniprotkb/F1SS42/entry#F1SS42-1", "sequence": { "sequence": "MVVSSLKLQELIQEIREAKTQAQEREVIQKECAHIRASFRDGDPLHRHRQLAKLLYVHMLGYPAHFGQMECLKLIASPRFTDKRVGYLGAMLLLDERQDAHLLITNSIKNDLSQGIQAIQGLALCTLSTMGSAEMCRDLANEVEKLLLQPSPYVRKKAVLTAVHMIRKVPELSNLFLPPCAQLLRERHHGILLGTITLITELCERSPAALKHFRKVVPQLVHILRSLVTTGYSTEHSISGVSDPFLQVQILRLLRILGQNHEESSETMNDLLAQVATNTNTSRNAGSAVLFETVLTILDIRSAAGLRVLAVNILGRFLLNSDRNIRYVALMSLLRLVQSDHSAVQRHRPTVVDCLRDPDASLSRRALELSLALVNSSNVRAMTQELQGFLESCPPDLRATCASGILLAAERFAPSKRWHIDTILHVLTTAGAYVRDDAVANLTQLIGGAQELHAYSVRRLYSALAKDISQQPLVQVAAWCIGEYGDLLLEGSCEEAEPLQVEEEEVLALLERVLQSHMSLPATRGYALTALMKLSTRLRGDNNRIRQVVSIYGSCMDVELQQRAVEYNTLFRKYDHMRAAILEKMPLMERGGPQVDEKAKESEEEEAAPNPTEPQASKLLDLLDLLDGPSADAHHPPPLDPTPGGTLINLLDLPCAPPPPAPIPNLRVFEREGLQLNLSFVRPPGTPALLLITVTATNTSAGDVTHFICQAAVPKSFQLQLQAPSGDTVPAQGGLPMTQLLRILNPNKAPLRLKLRLTYNHFGQSVQEIFEVNNLPVETWQ", "length": 781, "header": "tr|F1SS42-1|F1SS42_PIG Isoform 1 of AP-1 complex subunit gamma OS=Sus scrofa OX=9823 GN=AP1G2 PE=3 SV=3 CANONICAL=F1SS42-1" }, "locus": { "chromosome": "7", "start_pos": 75549305, "end_pos": 75533721, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002254.5", "url": "https://www.ensembl.org/id/ENSSSCT00000002254.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002202.3", "url": "https://www.ensembl.org/id/ENSSSCP00000002202.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 642, "start_aa": "Thr", "end_pos": 642, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr642", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 686, "start_aa": "Thr", "end_pos": 686, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr686", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D1N387", "url": "https://www.uniprot.org/uniprotkb/A0A8D1N387" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157682", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157682", "resource": "KEGG Pathway" }, { "id": "R-SSC-432720", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-432720", "resource": "Reactome", "description": "Lysosome Vesicle Biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "B0R024-1", "protein_name": "AP-1 complex subunit gamma", "gene_name": "ap1g2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTPSVRLQEMIRVIRSARTQGEERGIIQKECAEIRAQFRQTDNGERSHSLAKLLYVHMLGYPAHFGQMECVRLIASPRYSEKRIGYLGAMMLLDEKQDASLLITNSIKNDLSHSSQYVQSLALCTLACMGSSEMCRDLAPEIERLLRASTSYIKKKATLCAVHIIRKVPELAELFTPSARSLLSEKNHGVLHGAVVLITELCERNAETLDKFRKAVPELVTIMKGLVTSSYSPEHNVAGISDPFLQVRILRLLRILGHNNDSASDAMNDLLAQVATNTDSSKTAGSAVLYETVLTIMDINSESGLRVLAVNILGRFLLNNDRNIRYISMTSLQKIVQTDHNAVQRHRGTIVDCLKDQDTSVKRRALELSLALVSPVNIRSMMKELLIFLSSCPVELRSQTASGIFNAAERYSPSKRWHIDTILHVLTTAGGDVRDETVPNLIQLITTASELHCYTVHKLYRALVKDISQQSLVQVACWCIGEYGDLLLKGECEEIEPVQVTEDDVLDALETVLQSHMSAPATRGFALTATMKLSTRITDNVDRIRSIVSIYGSCIDLELQQRAVEYNALFKKYDHMRAAVLERMPLMEKNSPGHTNGDSSGEIKEPEPAKTKPVEPILLSEPANQVCDLLDLLGGTDTPVQPSSAPTSTATTTSSADLLDLLGGLEPTPVPAVTVYEKNGVSLKIQCDSQTDTDITVTLIASNSTQNDISNFTLQAAVPKSVQLQMKAPSGNVIAAHGLGQVTQTVLLNNPNKVSLKMRVRVSYSDQGTMLQDTVQIDSFPSPSWNSQPSIGVL", "length": 794 }, "evidence": [ { "id": "F1SS42", "url": "https://omabrowser.org/oma/group/F1SS42/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "D3ZGW2-1", "protein_name": "Junctophilin", "gene_name": "Ap1g2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGGKFDFDDGGCYVGGWEAGRAHGYGVCTGPGAQGEYSGCWAHGFESLGVFTGPGGHSYQGHWQQGKREGLGVERKSRWTYRGEWLGGLKGRSGVWESVSGLRYAGLWKDGFQDGYGTETYSDGGTYQGQWQAGKRHGYGVRQSVPYHQAALLRSPRRTSLDSGHSDPPTPPPPLPLPGDEGGSPASGSRGGFVLAGPGDADGASSRKRTPAAGGFFRRSLLLSGLRAGGRRSSLGSKRGSLRSEVSSEVGSTGPPGSEASGPPIPAPPALIEGSATEVYAGEWRADRRSGYGVSQRSNGLRYEGEWLGNRRHGYGRTTRPDGSREEGKYKRNRLVHGGRVRSLLPLALRRGKVKEKVDRAVEGARRAVSAARQRQEIAAARAADALLKAVAASSVAEKAVEAARMAKLIAQDLQPMLEAPGRRPRQDSGGSDTEPLDEDSPGVYENGLTPSEGSPELPSSPASSHQPWRAPPCRSPLPPGGNWGPFSSPKAWPEEWGGPGEQAEELAGYEAEDEAGMQGPGPRDGSPLLGGCSDSSGSLREEEGEDEESLPQLRAPGGSESEPVTTPVLRGLSSRGPDAGCLTEEFEEPAATERPAQPGAANPLVVGAVALLDLSLAFLFSQLLT", "length": 628 }, "evidence": [ { "id": "F1SS42", "url": "https://omabrowser.org/oma/group/F1SS42/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F6QYT8-1", "protein_name": "AP-1 complex subunit gamma", "gene_name": "AP1G2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDSNPSSQKLSSEGALLGSPRPVRQSRRLEVVKKILPLNSKSQRPEVRGFKIALQGGPGGAGSHNRGGETEGSDQARTFLGAWTRKRWGESRGVETEARMVASSLKLQDLIQEIRGAKTQAQEREVIQKECAHIRASFRDGDPLHSHRQLAKLLYVHMLGYPAHFGQMECLKLIASPRFTDKRVGYLGAMLLLDERQDAHLLITNSIKNDLSQGIEAVQGLALCTLSAMGSAEMCRDLAPEVEKLLLQPSPYVRKKAVLTAVHMIRKVPELSDIFLPPCAQLLHERHHGILLGTVTLITELCERSPAALQHFRKVVPQLVHTLRTLVMTGCSAEHSVSGVSDPFLQVQILRLLRILGRNHEESSETMNDLLAQVATNTDTSRNAGNAVLFETVLTIMDIRSAAGLRVLAVNILGRFLLNSDRNIRYVALTSLLKLVQSDHSAVQRHRPTVVECLWEPDASLSRRALELSLALVNSSNVRAMTQELQGFLESCPPDLRADCASGILLAAERFAPTKRWHIDTILRVLTTAGTYVRDDAVANLIQLIGGAQELHAYSVHRLYSALAEDISQQPLVQVAAWCIGEYGDLLLEGTCEETEPLQVEKEEVLALLERVLQSQMSLPATRGYALTALMKLSTRLHGDNNRICQVMSIYGSCQNVELQQRAVEYNALFRKYDHLRAAVLEKMPLVERGGPQVDEEAKESKEVAQLSEAAPLPTETQASKLLDLLDLLDGPSENAQHPPPLDPTPGDTLIHLLDLPCAPRPPAPIPNLKVFEREGLELNLSFVRPPGTPTLLLITVTATNTSGGDVTHFICQAAVPKSFQLQLQAPSGDTVPAQGGPPMTQLLRILNPNKAPLRLKLRLTYDHFGQSVQEIFEVNNLPVETWQ", "length": 884 }, "evidence": [ { "id": "F1SS42", "url": "https://omabrowser.org/oma/group/F1SS42/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O75843-1", "protein_name": "AP-1 complex subunit gamma-like 2", "gene_name": "AP1G2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVPSLKLQDLIEEIRGAKTQAQEREVIQKECAHIRASFRDGDPVHRHRQLAKLLYVHMLGYPAHFGQMECLKLIASSRFTDKRVGYLGAMLLLDERHDAHLLITNSIKNDLSQGIQPVQGLALCTLSTMGSAEMCRDLAPEVEKLLLQPSPYVRKKAILTAVHMIRKVPELSSVFLPPCAQLLHERHHGILLGTITLITELCERSPAALRHFRKVVPQLVHILRTLVTMGYSTEHSISGVSDPFLQVQILRLLRILGRNHEESSETMNDLLAQVATNTDTSRNAGNAVLFETVLTIMDIRSAAGLRVLAVNILGRFLLNSDRNIRYVALTSLLRLVQSDHSAVQRHRPTVVECLRETDASLSRRALELSLALVNSSNVRAMMQELQAFLESCPPDLRADCASGILLAAERFAPTKRWHIDTILHVLTTAGTHVRDDAVANLTQLIGGAQELHAYSVRRLYNALAEDISQQPLVQVAAWCIGEYGDLLLAGNCEEIEPLQVDEEEVLALLEKVLQSHMSLPATRGYALTALMKLSTRLCGDNNRIRQVVSIYGSCLDVELQQRAVEYDTLFRKYDHMRAAILEKMPLVERDGPQADEEAKESKEAAQLSEAAPVPTEPQASQLLDLLDLLDGASGDVQHPPHLDPSPGGALVHLLDLPCVPPPPAPIPDLKVFEREGVQLNLSFIRPPENPALLLITITATNFSEGDVTHFICQAAVPKSLQLQLQAPSGNTVPARGGLPITQLFRILNPNKAPLRLKLRLTYDHFHQSVQEIFEVNNLPVESWQ", "length": 785 }, "evidence": [ { "id": "F1SS42", "url": "https://omabrowser.org/oma/group/F1SS42/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O88512-1", "protein_name": "AP-1 complex subunit gamma-like 2", "gene_name": "Ap1g2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVVHSLRLQDLIEEIRGAKTQAQEREVIQKECAQIRASFRDGDPLQRHRQLAKLLYVHMLGYPAHFGQMECLKLIASPRFTDKRVGYLGAMLLLDERHDSHLLITNSIKNDLSQGNQPVQGLALCTLSTMGSAEMCRDLAPEVEKLLLQPSPYVRKKAILTAVHMIRKDPELSGIFLPPCTKLLRERHHGIQLGTVTLITELCERNPAALRHFRKVVPQLVQILRTLVTTGYSTEHSISGVSDPFLQVQILRLLRILGRNHEESSETMNDLLAQVATNTDTSRNAGNAVLLETVLTIMAIHSAAGLRVLAVNILGRFLLNNDKNIRYVALTSLLQLVQSDHSAVQRHRSTVVECLQETDASLSRRALELSLALVNSSNVRAMMQELQAFLESCPPDLRADCASGILLAAERFAPSKRWHIDTILHVLTTAGAHVRDDAVANLTQLIGEAEELHTYSVRRLYSALAEDISQQPLVQVAAWCIGEYGDLLLEGNCEETEPFQVEEEDVLALLEKVLQSHMSLPATRGYAITALMKLSTRLRGDNNRIRQVVSIYGSCVDLELQQRAVEYNTLFQKYDHMRAAILEKMPLVERGDPHVKEGGKEKQTEAQPLEVTAPAPTEPQATKLLDLLDLLGDTSEPLSSGHAQHLPPQTPSPGEALIHLLDLPCTPPPPAPIPSVRVFEREGLQLDLSFMRPLETPALLLVTATTTNSSKEDVTHFVCQAAVPKSFQLQLQAPSGNTIPAQGGLPITQVFRILNPNQAPLRLKLRLTYNHSGQPVQEIFEVDNLPVETWQ", "length": 791 }, "evidence": [ { "id": "F1SS42", "url": "https://omabrowser.org/oma/group/F1SS42/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SS42", "url": "https://www.uniprot.org/uniprotkb/F1SS42" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "F1SS42", "url": "https://www.uniprot.org/uniprotkb/F1SS42" } ], "pmid": "" }, { "name": "Golgi to vacuole transport", "id": "GO:0006896", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006896", "evidence": [ { "database": "UniProtKB", "id": "F1SS42", "url": "https://www.uniprot.org/uniprotkb/F1SS42" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "AP-1 adaptor complex", "id": "GO:0030121", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030121", "evidence": [ { "database": "UniProtKB", "id": "F1SS42", "url": "https://www.uniprot.org/uniprotkb/F1SS42" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SS42", "url": "https://www.uniprot.org/uniprotkb/F1SS42" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "clathrin adaptor activity", "id": "GO:0035615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035615", "evidence": [ { "database": "UniProtKB", "id": "F1SS42", "url": "https://www.uniprot.org/uniprotkb/F1SS42" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 280, "end_pos": 282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 375, "end_pos": 377, "annotation": "n_glycosylation_sequon" }, { "start_pos": 441, "end_pos": 443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 677, "end_pos": 679, "annotation": "n_glycosylation_sequon" }, { "start_pos": 698, "end_pos": 700, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS42", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS42" }, { "id": "PS50180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GAE", "eco_id": "ECO_0000259", "start_pos": 661, "end_pos": 776, "start_aa": "Ala", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 642, 686 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 280, "end_pos": 282 }, { "start_pos": 375, "end_pos": 377 }, { "start_pos": 441, "end_pos": 443 }, { "start_pos": 677, "end_pos": 679 }, { "start_pos": 698, "end_pos": 700 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV81-1", "uniprot_ac": "F1SV81", "uniprot_id": "F1SV81_PIG", "mass": { "chemical_mass": 54280.0, "monoisotopic_mass": 54280.0 }, "refseq": { "ac": "XP_003127811", "name": "E3 ubiquitin-protein ligase TRIM62", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127811" }, "gene_names": [ { "name": "TRIM62", "type": "recommended", "evidence": [ { "id": "F1SV81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ] }, { "name": "TRIM62", "type": "synonym", "evidence": [ { "id": "XP_003127811", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127811" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase TRIM62", "type": "recommended", "evidence": [ { "id": "F1SV81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV81/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1SV81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV81/entry#names_and_taxonomy" } ] }, { "name": "E3 ubiquitin-protein ligase TRIM62", "type": "synonym", "evidence": [ { "id": "XP_003127811", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127811" } ] }, { "name": "Tripartite motif-containing protein 62", "type": "synonym", "evidence": [ { "id": "F1SV81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV81/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "E3 ubiquitin ligase that plays a role in antifungal immunity by mediating 'Lys-27'-linked ubiquitination of CARD9 downstream of C-type lectin receptors; leading to CARD9 activation, followed by activation of NF-kappa-B and MAP kinase p38 pathways. E3 ubiquitin ligase activity is dependent on E2 ubiquitin-conjugating enzyme UBE2D2.", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81#function" }, { "database": "UniProtKB", "id": "ARBA00059305", "url": "https://www.uniprot.org/uniprotkb/ARBA00059305#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRIM62", "url": "https://www.uniprot.org/uniprotkb/F1SV81", "locus": { "chromosome": "6", "start_pos": 89406478, "end_pos": 89442746, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003620", "url": "https://www.ensembl.org/id/ENSSSCG00000003620" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003620", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003620", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13744", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13744", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16608", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16608", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19792", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19792", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519905", "url": "https://www.ncbi.nlm.nih.gov/gene/100519905", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035830", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035830", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519905", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519905", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TEHWNRQ", "url": "https://omabrowser.org/oma/group/TEHWNRQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV81", "url": "https://www.orthodb.org/?gene=F1SV81", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127811", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127811", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8D2BMT3", "url": "https://www.uniprot.org/uniprotkb/A0A8D2BMT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8D2BMT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8D2BMT3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV81-1", "url": "https://www.uniprot.org/uniprotkb/F1SV81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSLKLANIVERYSAFPLDAILNARRAARPCQAHDKVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQALQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHETNLTYEDFPTSKYTGPLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI", "length": 475, "header": "tr|F1SV81-1|F1SV81_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM62 OS=Sus scrofa OX=9823 GN=TRIM62 PE=3 SV=1 CANONICAL=F1SV81-1" }, "isoforms": [ { "isoform_ac": "A0A8D2BMT3-1", "url": "https://www.uniprot.org/uniprotkb/F1SV81/entry#A0A8D2BMT3-1", "sequence": { "sequence": "MPRETAMGQPMGALRELKEQLQALQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHETNLTYEDFPTSKYTGPLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI", "length": 353, "header": "tr|A0A8D2BMT3-1|F1SV81_PIG Computationally mapped isoform of E3 ubiquitin-protein ligase TRIM62 OS=Sus scrofa OX=9823 GN=TRIM62 PE=3 SV=1 CANONICAL=F1SV81-1" }, "locus": { "chromosome": "6", "start_pos": 89436309, "end_pos": 89408266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000052798.2", "url": "https://www.ensembl.org/id/ENSSSCT00000052798.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000038608.2", "url": "https://www.ensembl.org/id/ENSSSCP00000038608.2" } ] } }, { "isoform_ac": "F1SV81-1", "url": "https://www.uniprot.org/uniprotkb/F1SV81/entry#F1SV81-1", "sequence": { "sequence": "MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSLKLANIVERYSAFPLDAILNARRAARPCQAHDKVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQALQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHETNLTYEDFPTSKYTGPLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI", "length": 475, "header": "tr|F1SV81-1|F1SV81_PIG Isoform 1 of E3 ubiquitin-protein ligase TRIM62 OS=Sus scrofa OX=9823 GN=TRIM62 PE=3 SV=1 CANONICAL=F1SV81-1" }, "locus": { "chromosome": "6", "start_pos": 89442156, "end_pos": 89408266, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004016.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004016.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003925.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003925.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8D2BMT3", "url": "https://www.uniprot.org/uniprotkb/A0A8D2BMT3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519905", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519905", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZA67-1", "protein_name": "Tripartite motif containing 62", "gene_name": "ERMAP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MACSLKDELLCSICLSIYQDPVSFGCEHYFCRRCITEHWVRQEPQGARDCPECRRTFTEPTLAPSLKLANIVERYSAFPLDAILGAQRSPFPCKDHEKVKLFCLTDRTVVCFFCDEPAVHEQHQVTNVDDAFEELQRELKEQLQGLQESERGHTEALHLLKRQLADTKSSAKSLRATIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKIQRYSQQLRKVQEGSQILQERLAEADKHAFLAGVASLSERLKGKIHETNLTYEDFPTSKYMGPLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPRRFDVEVSVLGTQAFGGGVHYWEVVVSEKTQWMIGLAHEAVTRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVKSKLEKVGVFLDYDKGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI", "length": 475 }, "evidence": [ { "id": "F1SV81", "url": "https://omabrowser.org/oma/group/F1SV81/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BK51-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSLKLANIVERYSAFPLDAILNARRAARPCQAHDKVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQALQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGMASLSERLKGKIHETNLTYEDFPTSKYTGPLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI", "length": 475 }, "evidence": [ { "id": "F1SV81", "url": "https://omabrowser.org/oma/group/F1SV81/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "M0R947-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "Trim62", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSLKLANIVERYSAFPLDAILNARRAARPCQAHDKVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQALQDSAREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKTHETNLTYEDFPTSKYTGPLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI", "length": 475 }, "evidence": [ { "id": "F1SV81", "url": "https://omabrowser.org/oma/group/F1SV81/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80V85-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "Trim62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSLKLANIVERYSAFPLDAILNARRAARPCQAHDKVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFEELQRELKEQLQALQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHETNLTYEDFPTSKYTGPLQYTIWKSLFQDIHPVPAALTMDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI", "length": 475 }, "evidence": [ { "id": "F1SV81", "url": "https://omabrowser.org/oma/group/F1SV81/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9BVG3-1", "protein_name": "E3 ubiquitin-protein ligase TRIM62", "gene_name": "TRIM62", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACSLKDELLCSICLSIYQDPVSLGCEHYFCRRCITEHWVRQEAQGARDCPECRRTFAEPALAPSLKLANIVERYSSFPLDAILNARRAARPCQAHDKVKLFCLTDRALLCFFCDEPALHEQHQVTGIDDAFDELQRELKDQLQALQDSEREHTEALQLLKRQLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQLRKVQEGAQILQERLAETDRHTFLAGVASLSERLKGKIHETNLTYEDFPTSKYTGPLQYTIWKSLFQDIHPVPAALTLDPGTAHQRLILSDDCTIVAYGNLHPQPLQDSPKRFDVEVSVLGSEAFSSGVHYWEVVVAEKTQWVIGLAHEAASRKGSIQIQPSRGFYCIVMHDGNQYSACTEPWTRLNVRDKLDKVGVFLDYDQGLLIFYNADDMSWLYTFREKFPGKLCSYFSPGQSHANGKNVQPLRINTVRI", "length": 475 }, "evidence": [ { "id": "F1SV81", "url": "https://omabrowser.org/oma/group/F1SV81/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "regulation of viral entry into host cell", "id": "GO:0046596", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046596", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" }, { "name": "negative regulation of viral transcription", "id": "GO:0032897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032897", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" }, { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" }, { "name": "positive regulation of canonical NF-kappaB signal transduction", "id": "GO:0043123", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043123", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" }, { "name": "protein K27-linked ubiquitination", "id": "GO:0044314", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044314", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" }, { "name": "viral release from host cell", "id": "GO:0019076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019076", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" }, { "name": "positive regulation of antifungal innate immune response", "id": "GO:1905036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905036", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SV81", "url": "https://www.uniprot.org/uniprotkb/F1SV81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 263, "end_pos": 265, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV81" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 128, "start_aa": "Arg", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV81" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 277, "end_pos": 475, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV81" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 54, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 263, "end_pos": 265 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L7E1-1", "uniprot_ac": "I3L7E1", "uniprot_id": "I3L7E1_PIG", "mass": { "chemical_mass": 19525.0, "monoisotopic_mass": 19525.0 }, "refseq": { "ac": "XP_005665243", "name": "protein archease isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665243" }, "gene_names": [ { "name": "ZBTB8OS", "type": "recommended", "evidence": [ { "id": "I3L7E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ] }, { "name": "ZBTB8OS", "type": "synonym", "evidence": [ { "id": "XP_005665243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665243" } ] } ], "protein_names": [ { "name": "tRNA-splicing ligase-activating factor archease", "type": "recommended", "evidence": [ { "id": "I3L7E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7E1/entry#names_and_taxonomy" } ] }, { "name": "protein archease isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005665243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665243" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZBTB8OS", "url": "https://www.uniprot.org/uniprotkb/I3L7E1", "locus": { "chromosome": "6", "start_pos": 88970977, "end_pos": 88987004, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000029799", "url": "https://www.ensembl.org/id/ENSSSCG00000029799" } ] } } ], "crossref": [ { "id": "ENSSSCG00000029799", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000029799", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "102160721", "url": "https://www.ncbi.nlm.nih.gov/gene/102160721", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023572", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023572", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036820", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036820", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102160721", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102160721", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AITYHKM", "url": "https://omabrowser.org/oma/group/AITYHKM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L7E1", "url": "https://www.orthodb.org/?gene=I3L7E1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12682", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12682", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12682:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12682:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01951", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01951", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005665243", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005665243", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "68084", "url": "https://www.rhea-db.org/rhea/68084", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4F7W0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4F7W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7W0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLU1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L7E1-1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALEGEDFRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTMEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLNIDQRNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPEVFVIIDI", "length": 167, "header": "tr|I3L7E1-1|I3L7E1_PIG Isoform 1 of tRNA-splicing ligase-activating factor archease OS=Sus scrofa OX=9823 GN=ZBTB8OS PE=1 SV=2 CANONICAL=I3L7E1-1" }, "isoforms": [ { "isoform_ac": "A0A8W4F7W0-1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1/entry#A0A8W4F7W0-1", "sequence": { "sequence": "MYFFRLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTMEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLNIDQRNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPEVFVIIDI", "length": 131, "header": "tr|A0A8W4F7W0-1|I3L7E1_PIG Computationally mapped isoform of tRNA-splicing ligase-activating factor archease OS=Sus scrofa OX=9823 GN=ZBTB8OS PE=1 SV=1 CANONICAL=I3L7E1-1" }, "locus": { "chromosome": "6", "start_pos": 88979797, "end_pos": 88972439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096647.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096647.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075424.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075424.1" } ] } }, { "isoform_ac": "A0A8W4FLU1-1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1/entry#A0A8W4FLU1-1", "sequence": { "sequence": "MALEGEDFRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPEVFVIIDI", "length": 81, "header": "tr|A0A8W4FLU1-1|I3L7E1_PIG Computationally mapped isoform of tRNA-splicing ligase-activating factor archease OS=Sus scrofa OX=9823 GN=ZBTB8OS PE=1 SV=1 CANONICAL=I3L7E1-1" }, "locus": { "chromosome": "6", "start_pos": 88986571, "end_pos": 88972439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000094739.1", "url": "https://www.ensembl.org/id/ENSSSCT00000094739.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079272.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079272.1" } ] } }, { "isoform_ac": "I3L7E1-1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1/entry#I3L7E1-1", "sequence": { "sequence": "MALEGEDFRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTMEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLNIDQRNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPEVFVIIDI", "length": 167, "header": "tr|I3L7E1-1|I3L7E1_PIG Isoform 1 of tRNA-splicing ligase-activating factor archease OS=Sus scrofa OX=9823 GN=ZBTB8OS PE=1 SV=2 CANONICAL=I3L7E1-1" }, "locus": { "chromosome": "6", "start_pos": 88986571, "end_pos": 88972439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026659.4", "url": "https://www.ensembl.org/id/ENSSSCT00000026659.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019946.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019946.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4F7W0", "url": "https://www.uniprot.org/uniprotkb/A0A8W4F7W0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102160721", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102160721", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NMM3-1", "protein_name": "Zinc finger and BTB domain containing 8 opposite strand", "gene_name": "ZBTB8OS", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGGERDYSLTEEQKAVKAKYPPLTRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTETVEPLDTVEVEAEGHDMLSLLFHFLDEWLYKFSANEFFIPREVKVLYIDRMQFKIRSIGWGEEFSLPKHPQGTEVKAITYSAMQICEEEKPEVFVIIDI", "length": 164 }, "evidence": [ { "id": "I3L7E1", "url": "https://omabrowser.org/oma/group/I3L7E1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3H938-1", "protein_name": "tRNA-splicing ligase-activating factor archease", "gene_name": "Zbtb8os", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAQEEEDVRDYNLTEEQKAIKDKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEYFIPREVKVLNIDQKNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPEVFVIIDI", "length": 167 }, "evidence": [ { "id": "I3L7E1", "url": "https://omabrowser.org/oma/group/I3L7E1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "M0R5Y9-1", "protein_name": "tRNA-splicing ligase-activating factor archease", "gene_name": "Zbtb8os", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEEDVRDYNLTEEQKAIKNKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYRFSADEYFIPREVKVLNIDQKNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPEVFVIIDI", "length": 167 }, "evidence": [ { "id": "I3L7E1", "url": "https://omabrowser.org/oma/group/I3L7E1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2YDE7-1", "protein_name": "tRNA-splicing ligase-activating factor archease", "gene_name": "ZBTB8OS", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MALEGEDVRDYNLTEEQKAIKAKYPPVSRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLQTIEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVKVLNIDQRNFKIRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPEVFVIIDI", "length": 167 }, "evidence": [ { "id": "I3L7E1", "url": "https://omabrowser.org/oma/group/I3L7E1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q505B7-1", "protein_name": "tRNA-splicing ligase-activating factor archease", "gene_name": "Zbtb8os", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQEEEDVRDYNLTEEQKATKDKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAMFGYMTDTGTVEPLRTVEVETQGDDLQSLLFHFLDEWLYKFSADEYFIPREVKVLNIDQKNFKLRSIGWGEEFSLSKHPQGTEVKAITYSAMQVYNEEKPEVFFVIIDI", "length": 168 }, "evidence": [ { "id": "I3L7E1", "url": "https://omabrowser.org/oma/group/I3L7E1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54BU9-1", "protein_name": "Protein archease-like", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MESYGLGQLKNFEYLDHTADIMFHTWGKDLKEALEQMVLIMNNYMVELDSVELDDSATEQTISVNGHDMDSLLFALLDEFLFVFSTEFIIFKQVQIISFDRENFSIKAIGKGVELDKSKHTTGTEIKAITYSCMKIEENPDKSDIHVIVDI", "length": 151 }, "evidence": [ { "id": "I3L7E1", "url": "https://omabrowser.org/oma/group/I3L7E1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q566V0-1", "protein_name": "tRNA-splicing ligase-activating factor archease", "gene_name": "zbtb8os", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDRELDLTEEQKALKAKYPPITKKYEYLDHTADVQIHSWGNSLEEAFEQCAMGMFGYMTDTETVEPIDTVEVESEGDDMESLLYHFLDDWLFKFSADIFFIPREVKVLHIDRMRYKIRSIGWGEEFSINKHPQGTEVKAITYSAMQIHETEQPEIFVIIDI", "length": 162 }, "evidence": [ { "id": "I3L7E1", "url": "https://omabrowser.org/oma/group/I3L7E1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9VD92-1", "protein_name": "Protein archease-like", "gene_name": "Archease", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEVEFSRENFLLPEMKYEYLDHTADVQIHGWGSSLKEAFEQCGVAMFGYMTELDYVSVEQCFEIEAHGDDLESLLFHFLDELLFLFSAEPYLVCKKLEITKFDVENFEISCHCYGEPFELGKHPQGTEVKAITYSAMQIIQDVEASNYEVFVIIDI", "length": 156 }, "evidence": [ { "id": "I3L7E1", "url": "https://omabrowser.org/oma/group/I3L7E1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "tRNA processing", "id": "GO:0008033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008033", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" }, { "name": "mRNA splicing, via endonucleolytic cleavage and ligation", "id": "GO:0070054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070054", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" }, { "name": "IRE1-mediated unfolded protein response", "id": "GO:0036498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036498", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" }, { "name": "tRNA splicing, via endonucleolytic cleavage and ligation", "id": "GO:0006388", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006388", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" }, { "name": "tRNA exon ligation", "id": "GO:0000968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000968", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" }, { "name": "protein guanylyltransferase activity", "id": "GO:0044600", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044600", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" }, { "name": "RNA ligase (GTP) activity", "id": "GO:0170057", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0170057", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" }, { "name": "tRNA-splicing ligase complex", "id": "GO:0072669", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072669", "evidence": [ { "database": "UniProtKB", "id": "I3L7E1", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "68084", "name": "", "equation": "L-histidyl-[RNA ligase] + GTP = N(pros)-(5'-guanosyl-phosphono)-L-histidyl-[RNA ligase] + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "68084", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/68084" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L7E1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L7E1" }, { "id": "PF01951", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01951" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Archease", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 167, "start_aa": "Tyr", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 12, "end_pos": 14 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L599-1", "uniprot_ac": "I3L599", "uniprot_id": "I3L599_PIG", "mass": { "chemical_mass": 81288.0, "monoisotopic_mass": 81288.0 }, "refseq": { "ac": "XP_020936156", "name": "FERM domain-containing protein 7 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936156" }, "gene_names": [ { "name": "FRMD7", "type": "recommended", "evidence": [ { "id": "I3L599", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L599" } ] }, { "name": "FRMD7", "type": "synonym", "evidence": [ { "id": "XP_020936156", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936156" } ] } ], "protein_names": [ { "name": "FERM domain containing 7", "type": "synonym", "evidence": [ { "id": "I3L599", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L599/entry#names_and_taxonomy" } ] }, { "name": "FERM domain-containing protein 7 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020936156", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936156" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L599", "url": "https://www.uniprot.org/uniprotkb/I3L599" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FRMD7", "url": "https://www.uniprot.org/uniprotkb/I3L599", "locus": { "chromosome": "X", "start_pos": 108240573, "end_pos": 108294206, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023618", "url": "https://www.ensembl.org/id/ENSSSCG00000023618" } ] } } ], "crossref": [ { "id": "I3L599", "url": "https://alphafold.ebi.ac.uk/entry/I3L599", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000023618", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023618", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13193", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13193", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17188", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17188", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "102162664", "url": "https://www.ncbi.nlm.nih.gov/gene/102162664", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014352", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014352", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014847", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014847", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019747", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019747", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041788", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041788", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051835", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051835", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:102162664", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162664", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L599", "url": "https://www.orthodb.org/?gene=I3L599", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45858", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45858", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45858:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45858:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09379", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09379", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09380", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09380", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020936156", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020936156", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FA15", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA15", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FA15-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA15-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L599", "url": "https://www.uniprot.org/uniprotkb/I3L599", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L599-1", "url": "https://www.uniprot.org/uniprotkb/I3L599-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLHLKVQFLDDSQKIFVVDQKSSGKALFNLSCSHLNLAEKEYFGLEFCSHSGNTVWLELLKPITKQVKNPKEVVFKFMVKFFPVDPGHLREELTRYLFTLQIKKDLALGRLPCSDNCTALMVSHILQSELGDFHEETDRKHLARTRYLPNQDDLESKIVHFHQKHIGRSPAESDILLLDIARKLDMYGIRPHPASDGEGMQIHLAVAHMGVLVLRGNTKINTFNWAKIRKLSFKRKHFLIKLHANILVLCKDTLEFTMASRDACKAFWKTCVEYHAFFRLSEEPKSKPKTLLCSKGSSFRYSGRTQRQLLEYGKKGRLKSLPFERKHHPSQYHERQCRSSPDLLSDVSKQVEDLRLAYGSGYYRNVNGVHASEPVLDSRRRNSAVEVTFAAELERSRPEADPTSLHPSQSSSSFPFLYTDPVFNTDPDPDTAPRDYFEERSPLTSFQTSRKFADNHLSTCSGLTSKVSPARQLTYTDVPYIPCTGQQVDIMPPQVFFYVDRPPQVPRRSPLMAEERERPGSCLQPTAVKPAKRSPRNIRMKSIQQDFQELQEAKARTTGRSNISVDLEGDNPTCDDAFAGNSQEQPPKRSQSQSDMKTIRFPFGSEFRPLGPCPALSRKADLFTYMFAEQAFPPVLMDQGATERYVASESSDSESEILKPDYCSLYGKGIRSPMARIRLSSGSLQLDEEDEEVSFNTPAAEDRTLQKPCNYFLA", "length": 714, "header": "tr|I3L599-1|I3L599_PIG Isoform 1 of FERM domain containing 7 OS=Sus scrofa OX=9823 GN=FRMD7 PE=4 SV=3 CANONICAL=I3L599-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FA15-1", "url": "https://www.uniprot.org/uniprotkb/I3L599/entry#A0A8W4FA15-1", "sequence": { "sequence": "MVKFFPVDPGHLREELTRYLFTLQIKKDLALGRLPCSDNCTALMVSHILQSELGDFHEETDRKHLARTRYLPNQDDLESKIVHFHQKHIGRSPAESDILLLDIARKLDMYGIRPHPASDGEGMQIHLAVAHMGVLVLRGNTKINTFNWAKIRKLSFKRKHFLIKLHANILVLCKDTLEFTMASRDACKAFWKTCVEYHAFFRLSEEPKSKPKTLLCSKGSSFRYSGRTQRQLLEYGKKGRLKSLPFERKHHPSQYHERQCRSSPDLLSDVSKQVEDLRLAYGSGYYRNVNGVHASEPVLDSRRRNSAVEVTFAAELERSRPEADPTSLHPSQSSSSFPFLYTDPVFNTDPDPDTAPRDYFEERSPLTSFQTSRKFADNHLSTCSGLTSKVSPARQLTYTDVPYIPCTGQQVDIMPPQVFFYVDRPPQVPRRSPLMAEERERPGSCLQPTAVKPAKRSPRNIRMKSIQQDFQELQEAKARTTGRSNISVDLEGDNPTCDDAFAGNSQEQPPKRSQSQSDMKTIRFPFGSEFRPLGPCPALSRKADLFTYMFAEQAFPPVLMDQGATERYVASESSDSESEILKPDYCSLYGKGIRSPMARIRLSSGSLQLDEEDEEVSFNTPAAEDRTLQKPCNYFLA", "length": 637, "header": "tr|A0A8W4FA15-1|I3L599_PIG Computationally mapped isoform of FERM domain containing 7 OS=Sus scrofa OX=9823 GN=FRMD7 PE=4 SV=1 CANONICAL=I3L599-1" }, "locus": { "chromosome": "X", "start_pos": 108263478, "end_pos": 108241577, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095749.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095749.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076231.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076231.1" } ] } }, { "isoform_ac": "I3L599-1", "url": "https://www.uniprot.org/uniprotkb/I3L599/entry#I3L599-1", "sequence": { "sequence": "MLHLKVQFLDDSQKIFVVDQKSSGKALFNLSCSHLNLAEKEYFGLEFCSHSGNTVWLELLKPITKQVKNPKEVVFKFMVKFFPVDPGHLREELTRYLFTLQIKKDLALGRLPCSDNCTALMVSHILQSELGDFHEETDRKHLARTRYLPNQDDLESKIVHFHQKHIGRSPAESDILLLDIARKLDMYGIRPHPASDGEGMQIHLAVAHMGVLVLRGNTKINTFNWAKIRKLSFKRKHFLIKLHANILVLCKDTLEFTMASRDACKAFWKTCVEYHAFFRLSEEPKSKPKTLLCSKGSSFRYSGRTQRQLLEYGKKGRLKSLPFERKHHPSQYHERQCRSSPDLLSDVSKQVEDLRLAYGSGYYRNVNGVHASEPVLDSRRRNSAVEVTFAAELERSRPEADPTSLHPSQSSSSFPFLYTDPVFNTDPDPDTAPRDYFEERSPLTSFQTSRKFADNHLSTCSGLTSKVSPARQLTYTDVPYIPCTGQQVDIMPPQVFFYVDRPPQVPRRSPLMAEERERPGSCLQPTAVKPAKRSPRNIRMKSIQQDFQELQEAKARTTGRSNISVDLEGDNPTCDDAFAGNSQEQPPKRSQSQSDMKTIRFPFGSEFRPLGPCPALSRKADLFTYMFAEQAFPPVLMDQGATERYVASESSDSESEILKPDYCSLYGKGIRSPMARIRLSSGSLQLDEEDEEVSFNTPAAEDRTLQKPCNYFLA", "length": 714, "header": "tr|I3L599-1|I3L599_PIG Isoform 1 of FERM domain containing 7 OS=Sus scrofa OX=9823 GN=FRMD7 PE=4 SV=3 CANONICAL=I3L599-1" }, "locus": { "chromosome": "X", "start_pos": 108294123, "end_pos": 108241577, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025868.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025868.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019198.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019198.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FA15", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA15" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:102162664", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:102162664", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "I3L599", "url": "https://www.uniprot.org/uniprotkb/I3L599" } ], "pmid": "" }, { "name": "growth cone", "id": "GO:0030426", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030426", "evidence": [ { "database": "UniProtKB", "id": "I3L599", "url": "https://www.uniprot.org/uniprotkb/I3L599" } ], "pmid": "" }, { "name": "neuronal cell body", "id": "GO:0043025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043025", "evidence": [ { "database": "UniProtKB", "id": "I3L599", "url": "https://www.uniprot.org/uniprotkb/I3L599" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "actomyosin structure organization", "id": "GO:0031032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031032", "evidence": [ { "database": "UniProtKB", "id": "I3L599", "url": "https://www.uniprot.org/uniprotkb/I3L599" } ], "pmid": "" }, { "name": "regulation of neuron projection development", "id": "GO:0010975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010975", "evidence": [ { "database": "UniProtKB", "id": "I3L599", "url": "https://www.uniprot.org/uniprotkb/I3L599" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" }, { "start_pos": 562, "end_pos": 564, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L599-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 714, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L599-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L599" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L599", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L599" }, { "id": "PS50057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FERM", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 282, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 116, "end_pos": 118 }, { "start_pos": 29, "end_pos": 31 }, { "start_pos": 562, "end_pos": 564 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5W1-1", "uniprot_ac": "F2Z5W1", "uniprot_id": "F2Z5W1_PIG", "mass": { "chemical_mass": 23058.0, "monoisotopic_mass": 23058.0 }, "refseq": { "ac": "XP_020918234", "name": "ras-related protein Rab-30", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918234" }, "gene_names": [ { "name": "RAB30", "type": "recommended", "evidence": [ { "id": "F2Z5W1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ] }, { "name": "RAB30", "type": "synonym", "evidence": [ { "id": "XP_020918234", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918234" } ] } ], "protein_names": [ { "name": "Ras-related protein Rab-30", "type": "recommended", "evidence": [ { "id": "F2Z5W1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.2", "type": "synonym", "evidence": [ { "id": "F2Z5W1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1/entry#names_and_taxonomy" } ] }, { "name": "ras-related protein Rab-30", "type": "synonym", "evidence": [ { "id": "XP_020918234", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918234" } ] } ], "function": [ { "annotation": "The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different sets of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. RAB30 is required for maintaining the structural integrity of the Golgi apparatus, possibly by mediating interactions with cytoplasmic scaffolding proteins. Facilitates lipid homeostasis during fasting by regulating hepatic protein and lipid trafficking in a PPAR-alpha-dependent manner. Promotes autophagosome biogenesis during bacterial infection such as group A Streptococcus infection.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1#function" }, { "database": "UniProtKB", "id": "ARBA00093384", "url": "https://www.uniprot.org/uniprotkb/ARBA00093384#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAB30", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1", "locus": { "chromosome": "9", "start_pos": 17128797, "end_pos": 17222775, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014900", "url": "https://www.ensembl.org/id/ENSSSCG00000014900" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014900", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014900", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04114", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04114", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100626412", "url": "https://www.ncbi.nlm.nih.gov/gene/100626412", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041820", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041820", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626412", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626412", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VYDVSCQ", "url": "https://omabrowser.org/oma/group/VYDVSCQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5W1", "url": "https://www.orthodb.org/?gene=F2Z5W1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47977", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47977", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811438", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811438", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020918234", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020918234", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FA59", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FA59-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5W1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN", "length": 203, "header": "tr|F2Z5W1-1|F2Z5W1_PIG Isoform 1 of Ras-related protein Rab-30 OS=Sus scrofa OX=9823 GN=RAB30 PE=3 SV=3 CANONICAL=F2Z5W1-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FA59-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1/entry#A0A8W4FA59-1", "sequence": { "sequence": "MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGK", "length": 94, "header": "tr|A0A8W4FA59-1|F2Z5W1_PIG Computationally mapped isoform of Ras-related protein Rab-30 OS=Sus scrofa OX=9823 GN=RAB30 PE=3 SV=1 CANONICAL=F2Z5W1-1" }, "locus": { "chromosome": "9", "start_pos": 17146338, "end_pos": 17134338, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096169.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096169.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075182.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075182.1" } ] } }, { "isoform_ac": "F2Z5W1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1/entry#F2Z5W1-1", "sequence": { "sequence": "MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN", "length": 203, "header": "tr|F2Z5W1-1|F2Z5W1_PIG Isoform 1 of Ras-related protein Rab-30 OS=Sus scrofa OX=9823 GN=RAB30 PE=3 SV=3 CANONICAL=F2Z5W1-1" }, "locus": { "chromosome": "9", "start_pos": 17146338, "end_pos": 17129694, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036962.3", "url": "https://www.ensembl.org/id/ENSSSCT00000036962.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000033224.1", "url": "https://www.ensembl.org/id/ENSSSCP00000033224.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FA59", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FA59" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626412", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626412", "resource": "KEGG Pathway" }, { "id": "R-SSC-6811438", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811438", "resource": "Reactome", "description": "Intra-Golgi traffic" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HXE9-1", "protein_name": "Ras-related protein Rab-30", "gene_name": "Rab30", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN", "length": 203 }, "evidence": [ { "id": "F2Z5W1", "url": "https://omabrowser.org/oma/group/F2Z5W1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1NWF1-1", "protein_name": "Ras-related protein Rab-30", "gene_name": "RAB30", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLADKREVSQQRAAEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN", "length": 203 }, "evidence": [ { "id": "F2Z5W1", "url": "https://omabrowser.org/oma/group/F2Z5W1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O49841-1", "protein_name": "Ras-related protein RABC2a", "gene_name": "RABC2A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGSSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQECVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVPSLLEEGSSAVKRNILKQKPEHQTNTQSGCCS", "length": 210 }, "evidence": [ { "id": "F2Z5W1", "url": "https://omabrowser.org/oma/group/F2Z5W1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q15771-1", "protein_name": "Ras-related protein Rab-30", "gene_name": "RAB30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN", "length": 203 }, "evidence": [ { "id": "F2Z5W1", "url": "https://omabrowser.org/oma/group/F2Z5W1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q17QB7-1", "protein_name": "Ras-related protein Rab-30", "gene_name": "RAB30", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN", "length": 203 }, "evidence": [ { "id": "F2Z5W1", "url": "https://omabrowser.org/oma/group/F2Z5W1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q923S9-1", "protein_name": "Ras-related protein Rab-30", "gene_name": "Rab30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN", "length": 203 }, "evidence": [ { "id": "F2Z5W1", "url": "https://omabrowser.org/oma/group/F2Z5W1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VM50-1", "protein_name": "Ras-related protein Rab-30", "gene_name": "Rab30", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVEGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPTFDCLPDWLREIQEYANSKVLKILVGNKTDRDDREIPTQIGEEFAKQHDMYFLETSAKEAENVERLFYEIAAELIGQARSKDGSSSAAAAAAQRQSEGSSIGLGSFSAKAAQSNCCGGLASGGSNSSQGG", "length": 223 }, "evidence": [ { "id": "F2Z5W1", "url": "https://omabrowser.org/oma/group/F2Z5W1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "autophagosome membrane", "id": "GO:0000421", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000421", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "cytoplasmic vesicle", "id": "GO:0031410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031410", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "cis-Golgi network membrane", "id": "GO:0033106", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033106", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "Golgi cisterna", "id": "GO:0031985", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031985", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "autolysosome membrane", "id": "GO:0120281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120281", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "lipid homeostasis", "id": "GO:0055088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055088", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" }, { "name": "Rab protein signal transduction", "id": "GO:0032482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032482", "evidence": [ { "database": "UniProtKB", "id": "F2Z5W1", "url": "https://www.uniprot.org/uniprotkb/F2Z5W1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 182, "end_pos": 184, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] }, { "id": "R-SSC-8849748", "name": "The COG complex binds RABs at the Golgi membrane", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "Golgi membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8849748", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8849748" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 182, "end_pos": 184 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STW7-1", "uniprot_ac": "F1STW7", "uniprot_id": "F1STW7_PIG", "mass": { "chemical_mass": 109310.0, "monoisotopic_mass": 109310.0 }, "refseq": {}, "gene_names": [ { "name": "USP35", "type": "recommended", "evidence": [ { "id": "F1STW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STW7" } ] } ], "protein_names": [ { "name": "Ubiquitin carboxyl-terminal hydrolase", "type": "recommended", "evidence": [ { "id": "F1STW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STW7/entry#names_and_taxonomy" } ] }, { "name": "3.4.19.12", "type": "synonym", "evidence": [ { "id": "F1STW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STW7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes.", "evidence": [ { "database": "UniProtKB", "id": "F1STW7", "url": "https://www.uniprot.org/uniprotkb/F1STW7#function" }, { "database": "UniProtKB", "id": "RU366025", "url": "https://www.uniprot.org/uniprotkb/RU366025#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STW7", "url": "https://www.uniprot.org/uniprotkb/F1STW7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "USP35", "url": "https://www.uniprot.org/uniprotkb/F1STW7", "locus": { "chromosome": "9", "start_pos": 12662955, "end_pos": 12585955, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014892", "url": "https://www.ensembl.org/id/ENSSSCG00000014892" } ] } } ], "crossref": [ { "id": "F1STW7", "url": "https://alphafold.ebi.ac.uk/entry/F1STW7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014892", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014892", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001394", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001394", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049407", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049407", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24006:SF660", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24006:SF660", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FGE6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STW7", "url": "https://www.uniprot.org/uniprotkb/F1STW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STW7-1", "url": "https://www.uniprot.org/uniprotkb/F1STW7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKILEAVVTSSYPASVKQGLVRRVLEAARQPLEREQCLALLALGARLYVGGADELPRRVGCQLLHVAGRHHPEVFAEFFSARRVLRLLQGGAGPPGARALACVQLGLQLLPEGPAADEVFALLRREVLRTVCERPGPAACAQVARLLARHPRCIPDGPHRLLFCQQLVRSLGRFRCPAEGEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCLKELFAVISCTEEEPPSSALASVVQHLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASLVKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSILQALFMASDFRHCVLRLTENNSQPLMTKLQWLFAFLEHSQRPAISPENFLSASWTPWFSPGTQQDCSEYLKYLLDRLHEEEKTGTRICQKLKQSSSPSAPEEPPSPSSTSVEKMFGGKIVTRICCLRCLNVSSREEAFTDLSLAFPPAERCRRRRLGSVMLPPEEGPGKVGPRRQRKHCITADVPPAILDMAGLGHQGPGGQSLQEEKGEKEERAEEEEETREGEDEREKGEPKGEEEEEEEEKEAEEKEEADSLGPGTLRNAAVPSAEGSRSVLDLVNYFLSPEKLTAENRYHCESCASLQDAEKVVELSQGPRYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPLAGGRGQAYDLCSVVVHSGVSSESGHYYCYAREGAARPAPSLGAADRPEPDNQWYLFNDTRVSFSSFESVSNVTSFFPKDTAYVLFYRQRPGEGPEAEPGSPRARAEPALHKDLMEAISKDNILYLQEQEKEARSRAAYISALPASPHWGRGFDEDKDEDEGPPGGCNPAGGNGGDFHRLVF", "length": 986, "header": "tr|F1STW7-1|F1STW7_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase OS=Sus scrofa OX=9823 GN=USP35 PE=3 SV=4 CANONICAL=F1STW7-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FGE6-1", "url": "https://www.uniprot.org/uniprotkb/F1STW7/entry#A0A8W4FGE6-1", "sequence": { "sequence": "MPGPRRRVSWLASTPGSWPTSFRPCSWLLSSFRHCVLRLTENNSQPLMTKLQWLFAFLEHSQRPAISPENFLSASWTPWFSPGTQQDCSEYLKYLLDRLHEEEKTGTRICQKLKQSSSPSAPEEPPSPSSTSVEKMFGGKIVTRICCLRCLNVSSREEAFTDLSLAFPPAERCRRRRLGSVMLPPEEGPGKVGPRRQRKHCITADVPPAILDMAGLGHQGPGGQSLQEEKGEKEERAEEEEETREGEDEREKGEPKGEEEEEEEEKEAEEKEEADSLGPGTLRNAAVPSAEGSRSVLDLVNYFLSPEKLTAENRYHCESCASLQDAEKVVELSQGPRYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPLAGGRGQAYDLCSVVVHSGVSSESGHYYCYAREGAARPAPSLGAADRPEPDNQWYLFNDTRVSFSSFESVSNVTSFFPKDTAYVLFYRQRPGEGPEAEPGSPRARAEPALHKDLMEAISKDNILYLQEQEKEARSRAAYISALPASPHWGRGFDEDKDEDEGPPGGCNPAGGNGGDFHRLVF", "length": 553, "header": "tr|A0A8W4FGE6-1|F1STW7_PIG Computationally mapped isoform of Ubiquitin carboxyl-terminal hydrolase OS=Sus scrofa OX=9823 GN=USP35 PE=3 SV=1 CANONICAL=F1STW7-1" }, "locus": { "chromosome": "9", "start_pos": 12662020, "end_pos": 12604543, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093389.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093389.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078505.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078505.1" } ] } }, { "isoform_ac": "F1STW7-1", "url": "https://www.uniprot.org/uniprotkb/F1STW7/entry#F1STW7-1", "sequence": { "sequence": "MDKILEAVVTSSYPASVKQGLVRRVLEAARQPLEREQCLALLALGARLYVGGADELPRRVGCQLLHVAGRHHPEVFAEFFSARRVLRLLQGGAGPPGARALACVQLGLQLLPEGPAADEVFALLRREVLRTVCERPGPAACAQVARLLARHPRCIPDGPHRLLFCQQLVRSLGRFRCPAEGEEGAVEFLEQAQQVSGLLAQLWRAQPAAILPCLKELFAVISCTEEEPPSSALASVVQHLPLELMDGVVRNLSNDDSVTDSQMLTAISRMIDWVSWPLGKNIDKWIIALLKGLAAVKKFSILIEVSLAKIEKVFSKLLYPIVRGAALSVLKYMLLTFQHSHEAFHLLLPHIPPMVASLVKEDSNSGTSCLEQLAELVHCMVFRFPGFPDLYEPVMEAIKDLHVPNEDRIKQLLGQDAWTSQKSELAGFYPRLMAKSDTGKIGLINLGNTCYVNSILQALFMASDFRHCVLRLTENNSQPLMTKLQWLFAFLEHSQRPAISPENFLSASWTPWFSPGTQQDCSEYLKYLLDRLHEEEKTGTRICQKLKQSSSPSAPEEPPSPSSTSVEKMFGGKIVTRICCLRCLNVSSREEAFTDLSLAFPPAERCRRRRLGSVMLPPEEGPGKVGPRRQRKHCITADVPPAILDMAGLGHQGPGGQSLQEEKGEKEERAEEEEETREGEDEREKGEPKGEEEEEEEEKEAEEKEEADSLGPGTLRNAAVPSAEGSRSVLDLVNYFLSPEKLTAENRYHCESCASLQDAEKVVELSQGPRYLILTLLRFSFDLRTMRRRKILDDVSIPLLLRLPLAGGRGQAYDLCSVVVHSGVSSESGHYYCYAREGAARPAPSLGAADRPEPDNQWYLFNDTRVSFSSFESVSNVTSFFPKDTAYVLFYRQRPGEGPEAEPGSPRARAEPALHKDLMEAISKDNILYLQEQEKEARSRAAYISALPASPHWGRGFDEDKDEDEGPPGGCNPAGGNGGDFHRLVF", "length": 986, "header": "tr|F1STW7-1|F1STW7_PIG Isoform 1 of Ubiquitin carboxyl-terminal hydrolase OS=Sus scrofa OX=9823 GN=USP35 PE=3 SV=4 CANONICAL=F1STW7-1" }, "locus": { "chromosome": "9", "start_pos": 12662020, "end_pos": 12592675, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016247.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016247.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015813.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015813.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FGE6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein deubiquitination", "id": "GO:0016579", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016579", "evidence": [ { "database": "UniProtKB", "id": "F1STW7", "url": "https://www.uniprot.org/uniprotkb/F1STW7" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1STW7", "url": "https://www.uniprot.org/uniprotkb/F1STW7" } ], "pmid": "" }, { "name": "regulation of protein stability", "id": "GO:0031647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031647", "evidence": [ { "database": "UniProtKB", "id": "F1STW7", "url": "https://www.uniprot.org/uniprotkb/F1STW7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "cysteine-type deubiquitinase activity", "id": "GO:0004843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004843", "evidence": [ { "database": "UniProtKB", "id": "F1STW7", "url": "https://www.uniprot.org/uniprotkb/F1STW7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1STW7", "url": "https://www.uniprot.org/uniprotkb/F1STW7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1STW7", "url": "https://www.uniprot.org/uniprotkb/F1STW7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 585, "end_pos": 587, "annotation": "n_glycosylation_sequon" }, { "start_pos": 862, "end_pos": 864, "annotation": "n_glycosylation_sequon" }, { "start_pos": 876, "end_pos": 878, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STW7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 986, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STW7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STW7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STW7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STW7" }, { "id": "PS50235", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50235" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "USP", "eco_id": "ECO_0000259", "start_pos": 441, "end_pos": 894, "start_aa": "Ile", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 251, "end_pos": 253 }, { "start_pos": 475, "end_pos": 477 }, { "start_pos": 585, "end_pos": 587 }, { "start_pos": 862, "end_pos": 864 }, { "start_pos": 876, "end_pos": 878 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQU5-1", "uniprot_ac": "F1SQU5", "uniprot_id": "F1SQU5_PIG", "mass": { "chemical_mass": 53657.0, "monoisotopic_mass": 53657.0 }, "refseq": { "ac": "XP_013841374", "name": "phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841374" }, "gene_names": [ { "name": "PIGA", "type": "recommended", "evidence": [ { "id": "F1SQU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQU5" } ] }, { "name": "PIGA", "type": "synonym", "evidence": [ { "id": "XP_013841374", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841374" } ] } ], "protein_names": [ { "name": "Phosphatidylinositol N-acetylglucosaminyltransferase subunit A", "type": "recommended", "evidence": [ { "id": "F1SQU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQU5/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.198", "type": "synonym", "evidence": [ { "id": "F1SQU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQU5/entry#names_and_taxonomy" } ] }, { "name": "GlcNAc-PI synthesis protein", "type": "synonym", "evidence": [ { "id": "F1SQU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQU5/entry#names_and_taxonomy" } ] }, { "name": "Phosphatidylinositol-glycan biosynthesis class A protein", "type": "synonym", "evidence": [ { "id": "F1SQU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQU5/entry#names_and_taxonomy" } ] }, { "name": "phosphatidylinositol N-acetylglucosaminyltransferase subunit A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_013841374", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841374" } ] } ], "function": [ { "annotation": "Catalytic subunit of the glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex that catalyzes the transfer of N-acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol and participates in the first step of GPI biosynthesis.", "evidence": [ { "database": "UniProtKB", "id": "F1SQU5", "url": "https://www.uniprot.org/uniprotkb/F1SQU5#function" }, { "database": "UniProtKB", "id": "ARBA00058926", "url": "https://www.uniprot.org/uniprotkb/ARBA00058926#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQU5", "url": "https://www.uniprot.org/uniprotkb/F1SQU5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PIGA", "url": "https://www.uniprot.org/uniprotkb/F1SQU5", "locus": { "chromosome": "X", "start_pos": 11871750, "end_pos": 11886438, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012134", "url": "https://www.ensembl.org/id/ENSSSCG00000012134" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012134", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012134", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03796", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03796", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156880", "url": "https://www.ncbi.nlm.nih.gov/gene/100156880", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001296", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001296", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013234", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013234", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039507", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039507", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156880", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156880", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SHFWMSG", "url": "https://omabrowser.org/oma/group/SHFWMSG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQU5", "url": "https://www.orthodb.org/?gene=F1SQU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "K7GL71", "url": "https://www.orthodb.org/?gene=K7GL71", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45871", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45871", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45871:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45871:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08288", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08288", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13692", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13692", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-162710", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-162710", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013841374", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013841374", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "14789", "url": "https://www.rhea-db.org/rhea/14789", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FGX6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQU5", "url": "https://www.uniprot.org/uniprotkb/F1SQU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQU5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GL71", "url": "https://www.uniprot.org/uniprotkb/K7GL71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GL71-1", "url": "https://www.uniprot.org/uniprotkb/K7GL71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GPP7", "url": "https://www.uniprot.org/uniprotkb/K7GPP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "K7GPP7-1", "url": "https://www.uniprot.org/uniprotkb/K7GPP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MACSGGGGPSQPPSPALSSVSPGSLPTCRSCSHNICMVSDFFYPNMGGVESHIYQLSQCLIERGHKVIIVTHAYGNRKGIRYLTNGLKVYYLPLKVMYNQSTATTLFHSLPLLRYIFVRERVTIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPDPFRRHDSVITIVVVSRLVYRKGTDLLSGIIPELCQKYPDLNFVIGGEGPKRIILEEVRERYQLHDRVRLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLPESLIILCEPSVKSLCEGLEKAISQLKSGALPPPESIHNIVKTFYTWRNVAERTEKVYDRVAGEAVLPMDKRLDRLISHCGPVTGCIFALLAVFNFLFLVFLRWMTPDSIIDVAIDATGPKGAWTRQYPSHANGDENNEESETR", "length": 485, "header": "tr|F1SQU5-1|F1SQU5_PIG Isoform 1 of Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Sus scrofa OX=9823 GN=PIGA PE=3 SV=3 CANONICAL=F1SQU5-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FGX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SQU5/entry#A0A8W4FGX6-1", "sequence": { "sequence": "MACSGGGGPSQPPSPALSSVSPGSLPTCRSCSHNICMVSDFFYPNMGGVESHIYQLSQCLIERGHKVIIVTHAYGNRKGIRYLTNGLKVYYLPLKVMYNQSTATTLFHSLPLLRVRLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLPESLIILCEPSVKSLCEGLEKAISQLKSGALPPPESIHNIVKTFYTWRNVAERTEKVYDRVAGEAVLPMDKRLDRLISHCGPVTGCIFALLAVFNFLFLVFLRWMTPDSIIDVAIDATGPKGAWTRQYPSHANGDENNEESETR", "length": 315, "header": "tr|A0A8W4FGX6-1|F1SQU5_PIG Computationally mapped isoform of Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Sus scrofa OX=9823 GN=PIGA PE=3 SV=1 CANONICAL=F1SQU5-1" }, "locus": { "chromosome": "X", "start_pos": 11883721, "end_pos": 11873814, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101817.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101817.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078574.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078574.1" } ] } }, { "isoform_ac": "F1SQU5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQU5/entry#F1SQU5-1", "sequence": { "sequence": "MACSGGGGPSQPPSPALSSVSPGSLPTCRSCSHNICMVSDFFYPNMGGVESHIYQLSQCLIERGHKVIIVTHAYGNRKGIRYLTNGLKVYYLPLKVMYNQSTATTLFHSLPLLRYIFVRERVTIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPDPFRRHDSVITIVVVSRLVYRKGTDLLSGIIPELCQKYPDLNFVIGGEGPKRIILEEVRERYQLHDRVRLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLPESLIILCEPSVKSLCEGLEKAISQLKSGALPPPESIHNIVKTFYTWRNVAERTEKVYDRVAGEAVLPMDKRLDRLISHCGPVTGCIFALLAVFNFLFLVFLRWMTPDSIIDVAIDATGPKGAWTRQYPSHANGDENNEESETR", "length": 485, "header": "tr|F1SQU5-1|F1SQU5_PIG Isoform 1 of Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Sus scrofa OX=9823 GN=PIGA PE=3 SV=3 CANONICAL=F1SQU5-1" }, "locus": { "chromosome": "X", "start_pos": 11883721, "end_pos": 11873814, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013273.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013273.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012917.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012917.3" } ] } }, { "isoform_ac": "K7GL71-1", "url": "https://www.uniprot.org/uniprotkb/F1SQU5/entry#K7GL71-1", "sequence": { "sequence": "MGLAGTDLLSGIIPELCQKYPDLNFVIGGEGPKRIILEEVRERYQLHDRVRLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLPESLIILCEPSVKSLCEGLEKAISQLKSGALPPPESIHNIVKTFYTWRNVAERTEKVYDRVAGEAVLPMDKRLDRLISHCGPVTGCIFALLAVFNFLFLVFLRWMTPDSIIDVAIDATGPKGAWTRQYPSHANGDENNEESETR", "length": 250, "header": "tr|K7GL71-1|F1SQU5_PIG Computationally mapped isoform of Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Sus scrofa OX=9823 GN=PIGA PE=3 SV=3 CANONICAL=F1SQU5-1" }, "locus": { "chromosome": "X", "start_pos": 11886405, "end_pos": 11873814, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000035430.4", "url": "https://www.ensembl.org/id/ENSSSCT00000035430.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028600.3", "url": "https://www.ensembl.org/id/ENSSSCP00000028600.3" } ] } }, { "isoform_ac": "K7GPP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQU5/entry#K7GPP7-1", "sequence": { "sequence": "PVVSTRVGGIPEVLPESLIILCEPSVKSLCEGLEKAISQLKSGALPPPESIHNIVKTFYTWRNVAERTEKVYDRVAGEAVLPMDKRLDRLISHCGPVTGCIFALLAVFNFLFLVFLRWMTPDSIIDVAIDATGPKGAWTRQYPSHANGDENNEESETR", "length": 158, "header": "tr|K7GPP7-1|F1SQU5_PIG Computationally mapped isoform of Phosphatidylinositol N-acetylglucosaminyltransferase subunit A OS=Sus scrofa OX=9823 GN=PIGA PE=3 SV=2 CANONICAL=F1SQU5-1" }, "locus": { "chromosome": "X", "start_pos": 11886395, "end_pos": 11873814, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032767.3", "url": "https://www.ensembl.org/id/ENSSSCT00000032767.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029862.2", "url": "https://www.ensembl.org/id/ENSSSCP00000029862.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "K7GL71", "url": "https://www.uniprot.org/uniprotkb/K7GL71" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156880", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156880", "resource": "KEGG Pathway" }, { "id": "R-SSC-162710", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-162710", "resource": "Reactome", "description": "Synthesis of glycosylphosphatidylinositol (GPI)" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ADP6-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase subunit A", "gene_name": "Piga", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRRGGGQGQPPSVSPSPGSSGSLSTDRTCTHNICMVSDFFYPNMGGVESHIYQLSQCLIERGHKVITVTHAYGNRKGVRYLTNGLKVYYLPLRVMYNQSTATTLFHSLPLLRYIFVRERITIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPEPFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQELNFLIGGEGPKRIILEEVRERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTKVGGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKTFYTWRNVAERTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFLQWMTPDSVIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR", "length": 485 }, "evidence": [ { "id": "F1SQU5", "url": "https://omabrowser.org/oma/group/F1SQU5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0X988-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase subunit A", "gene_name": "PIGA", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPRRCPGGRMGAGRAQSVCMVSDFFYPNMGGVESHIYQLSQCLIERGHKVLVVTHAYGSRKGVRYLTNGLKVYYLPLRVMYNQSTATTLFHSLPLLRYIFVRERVTIVHAHSSFSAMAHDALFHAKTMGLRTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALDPRIVSVIPNAVDPTDFTPDPSRRDDSTVTIVVVSRLVYRKGIDLLSGIIPELCQKYPELHFLVGGEGPKRIVLEEVRERYQLHDRVRLLGALEHQDVRDVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLPENLIILCEPSVKSLCDGLEKAIARLRSGKLPSPESIHNKVKTFYTWRNVAERTEKVYERVADEVVLPMDERLDRLMSHCGPVTGYIFALFAVLNFLFLLFLRWMTPDSIIDVAIDATGPNGAWTKQYFWGKRGRIREEPPSSKSAQMERKNAPNPRGFKAC", "length": 487 }, "evidence": [ { "id": "F1SQU5", "url": "https://omabrowser.org/oma/group/F1SQU5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B0S6Z8-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase subunit A", "gene_name": "piga", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGHRRRGHTHAPKTPTCLNAHSSNTVQHADHEQSVKHSICMVSDFFYPNMGGVESHIYQLSQCLIEKGHKVVIATHAYGDRRGIRYLTNGLKVYYLPLQVMYNQSTSTTCFHSLPLLRCIFVRECITIVHAHSSFSAMAHDALFHAKTMGLNTVFTDHSLFGFADLSSVLTNKLLTVSLCDTNHIVCVSYTSKENTVLRATLDPEIVSVIPNAVDPTDFTPDPCRRDNSKITIVVISRLVYRKGIDLLSGIIPELCGRHPDLCFLIGGEGPKRIILEEVREKYQLHDRVRLLGALDHKDVRDVLVQGHIFLNTSLTEAFCMAIVEGASCGLQVVSTRVGGIPEVLPNELVTLCGPSVCSLCDGLETVIKKIRSGNVESPAAIHRKVRTLYTWRNVAERTEKVYNRVCREPVLPLSARLHRLRSHCGAVAGSIFSFVAVINFLFLLFLQWLRPDSLIDVAVDASGPHSRLKQQVSHKTSKTANPNDLT", "length": 487 }, "evidence": [ { "id": "F1SQU5", "url": "https://omabrowser.org/oma/group/F1SQU5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P32363-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit", "gene_name": "SPT14", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGFNIAMLCDFFYPQLGGVEFHIYHLSQKLIDLGHSVVIITHAYKDRVGVRHLTNGLKVYHVPFFVIFRETTFPTVFSTFPIIRNILLREQIQIVHSHGSASTFAHEGILHANTMGLRTVFTDHSLYGFNNLTSIWVNKLLTFTLTNIDRVICVSNTCKENMIVRTELSPDIISVIPNAVVSEDFKPRDPTGGTKRKQSRDKIVIVVIGRLFPNKGSDLLTRIIPKVCSSHEDVEFIVAGDGPKFIDFQQMIESHRLQKRVQLLGSVPHEKVRDVLCQGDIYLHASLTEAFGTILVEAASCNLLIVTTQVGGIPEVLPNEMTVYAEQTSVSDLVQATNKAINIIRSKALDTSSFHDSVSKMYDWMDVAKRTVEIYTNISSTSSADDKDWMKMVANLYKRDGIWAKHLYLLCGIVEYMLFFLLEWLYPRDEIDLAPKWPKKTVSNETKEARET", "length": 452 }, "evidence": [ { "id": "F1SQU5", "url": "https://omabrowser.org/oma/group/F1SQU5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37287-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase subunit A", "gene_name": "PIGA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MACRGGAGNGHRASATLSRVSPGSLYTCRTRTHNICMVSDFFYPNMGGVESHIYQLSQCLIERGHKVIIVTHAYGNRKGIRYLTSGLKVYYLPLKVMYNQSTATTLFHSLPLLRYIFVRERVTIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPDPFRRHDSITIVVVSRLVYRKGIDLLSGIIPELCQKYPDLNFIIGGEGPKRIILEEVRERYQLHDRVRLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTRVGGIPEVLPENLIILCEPSVKSLCEGLEKAIFQLKSGTLPAPENIHNIVKTFYTWRNVAERTEKVYDRVSVEAVLPMDKRLDRLISHCGPVTGYIFALLAVFNFLFLIFLRWMTPDSIIDVAIDATGPRGAWTNNYSHSKRGGENNEISETR", "length": 484 }, "evidence": [ { "id": "F1SQU5", "url": "https://omabrowser.org/oma/group/F1SQU5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54QB2-1", "protein_name": "phosphatidylinositol N-acetylglucosaminyltransferase", "gene_name": "pigA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDQQHQNQSQQNNTIEINNNNNNNNNNNIVNNNNNIDSIDNNNIVNINNNNNNNNNNNINNVNNYNINNNNIANFNYNNNNNNNNGERKYRIAMVSDFFYPNMGGVEEHLYQLSQCLIKRGNKVIIITHSYGDRFGIRYVTNGLKVYYIPQAPFYNQSSFPTLYFTFPLFRKILIRERIEIVHCHQAFSTLAHESILHARTMGYSTCFTDHSLFGFADASSIHMNKLLKFTLSDISHVICVSNTSKENTVLRAQLDPHLVSVIPNAVDTTQFTPDPSKRDPNKLTIVIMSRLVYRKGIDLIIDIIPNICKKFPNAYFVIGGDGPKRVSLEEMREKHQLHDRVELLGSVKHSNVRNVLVRGDIFLNSSLTEAFCIAIVEAASCGLYVVSTKVGGVPEVLPPHMISLAQPKSDDLEEKLTDAIINLKSTPLQTHEEVRTMYDWNDVARRTETVYDIISKAPKVPFIERLRRFVGCGLWAGKLNCMVVALDNLIYRCLEYYSPKEDIDEAFDFPIEGYTKFKQQIK", "length": 523 }, "evidence": [ { "id": "F1SQU5", "url": "https://omabrowser.org/oma/group/F1SQU5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q64323-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase subunit A", "gene_name": "Piga", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANRRGGGQGQPPSVSPSPGSSGNLSDDRTCTHNICMVSDFFYPNMGGVESHIYQLSQCLIERGHKVITVTHAYGNRKGVRYLTNGLKVYYLPLRVMYNQSTATTLFHSLPLLRYIFVRERITIIHSHSSFSAMAHDALFHAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENTVLRAALNPEIVSVIPNAVDPTDFTPDPFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQELHFLIGGEGPKRIILEEVRERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTKVGGIPEVLPESLIILCEPSVKSLCDGLEKAIFQVKSGTLPAPENIHNVVKTFYTWRNVAERTEKVYERVSKETVLPMHKRLDRLISHCGPVTGYMFALLAVLSYLFLIFLQWMTPDSFIDVAIDATGPRRAWTHQWPRDKKRDENDKISQSR", "length": 485 }, "evidence": [ { "id": "F1SQU5", "url": "https://omabrowser.org/oma/group/F1SQU5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94BX4-1", "protein_name": "Phosphatidylinositol N-acetylglucosaminyltransferase subunit A", "gene_name": "PIGA", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAEPPKLRVLMVSDFFFPNFGGVENHIYYLSQCLLKLGHKVVVMTHAYGNRSGVRYMTGGLKVYYVPWRPFVMQTTFPTVYGTLPIVRTILRREKITVVHGHQAFSTLCHEALMHARTMGYKVVFTDHSLYGFADVGSIHMNKVLQFSLADIDQAICVSHTSKENTVLRSGLSPAKVFMIPNAVDTAMFKPASVRPSTDIITIVVISRLVYRKGADLLVEVIPEVCRLYPNVRFVVGGDGPKHVRLEEMREKHSLQDRVEMLGAVPHSRVRSVLVTGHIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMVVLAEPDPDDMVRAIEKAISILPTINPEEMHNRMKKLYSWQDVAKRTEIVYDRALKCSNRSLLERLMRFLSCGAWAGKLFCMVMILDYLLWRLLQLLQPDEDIEEAPDICLCHHRGVEVSEGLRKKIK", "length": 447 }, "evidence": [ { "id": "F1SQU5", "url": "https://omabrowser.org/oma/group/F1SQU5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SQU5", "url": "https://www.uniprot.org/uniprotkb/F1SQU5" } ], "pmid": "" }, { "name": "glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex", "id": "GO:0000506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000506", "evidence": [ { "database": "UniProtKB", "id": "F1SQU5", "url": "https://www.uniprot.org/uniprotkb/F1SQU5" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SQU5", "url": "https://www.uniprot.org/uniprotkb/F1SQU5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "GPI anchor biosynthetic process", "id": "GO:0006506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006506", "evidence": [ { "database": "UniProtKB", "id": "F1SQU5", "url": "https://www.uniprot.org/uniprotkb/F1SQU5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatidylinositol N-acetylglucosaminyltransferase activity", "id": "GO:0017176", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017176", "evidence": [ { "database": "UniProtKB", "id": "F1SQU5", "url": "https://www.uniprot.org/uniprotkb/F1SQU5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14789", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol) + UDP-N-acetyl-alpha-D-glucosamine = a 6-(N-acetyl-alpha-D-glucosaminyl)-1-(1,2-diacyl-sn-glycero-3-phospho)-1D-myo-inositol + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14789", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14789" } ] }, { "id": "R-SSC-162730", "name": "phosphatidylinositol + UDP-N-acetyl-D-glucosamine -> N-acetylglucosaminyl-PI + UDP", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-162730", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-162730" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQU5" }, { "id": "PF00534", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00534" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyl transferase family 1", "eco_id": "ECO_0000259", "start_pos": 226, "end_pos": 366, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQU5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQU5" }, { "id": "PF08288", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08288" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PIGA GPI anchor biosynthesis", "eco_id": "ECO_0000259", "start_pos": 72, "end_pos": 161, "start_aa": "His", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 308, "end_pos": 310 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUU1-1", "uniprot_ac": "F1SUU1", "uniprot_id": "F1SUU1_PIG", "mass": { "chemical_mass": 112856.0, "monoisotopic_mass": 112856.0 }, "refseq": { "ac": "XP_020951044", "name": "pleckstrin homology domain-containing family M member 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951044" }, "gene_names": [ { "name": "PLEKHM2", "type": "recommended", "evidence": [ { "id": "F1SUU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" } ] }, { "name": "PLEKHM2", "type": "synonym", "evidence": [ { "id": "XP_020951044", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951044" } ] } ], "protein_names": [ { "name": "Pleckstrin homology domain-containing family M member 2", "type": "recommended", "evidence": [ { "id": "F1SUU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUU1/entry#names_and_taxonomy" } ] }, { "name": "pleckstrin homology domain-containing family M member 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020951044", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951044" } ] } ], "function": [ { "annotation": "Plays a role in lysosomes movement and localization at the cell periphery acting as an effector of ARL8B. Required for ARL8B to exert its effects on lysosome location, recruits kinesin-1 to lysosomes and hence direct their movement toward microtubule plus ends. Binding to ARL8B provides a link from lysosomal membranes to plus-end-directed motility. Critical factor involved in NK cell-mediated cytotoxicity. Drives the polarization of cytolytic granules and microtubule-organizing centers (MTOCs) toward the immune synapse between effector NK lymphocytes and target cells. Required for maintenance of the Golgi apparatus organization. May play a role in membrane tubulation.", "evidence": [ { "database": "UniProtKB", "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1#function" }, { "database": "UniProtKB", "id": "ARBA00056822", "url": "https://www.uniprot.org/uniprotkb/ARBA00056822#function" }, { "database": "UniProtKB", "id": "A0A8W4FGY6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGY6#function" }, { "database": "UniProtKB", "id": "A0A8W4FKL4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKL4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLEKHM2", "url": "https://www.uniprot.org/uniprotkb/F1SUU1", "locus": { "chromosome": "6", "start_pos": 74907766, "end_pos": 74864968, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003468", "url": "https://www.ensembl.org/id/ENSSSCG00000003468" } ] } } ], "crossref": [ { "id": "F1SUU1", "url": "https://alphafold.ebi.ac.uk/entry/F1SUU1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003468", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003468", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd13309", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13309", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17680", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17680", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522681", "url": "https://www.ncbi.nlm.nih.gov/gene/100522681", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047327", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047327", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053015", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053015", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057288", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057288", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522681", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522681", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUU1", "url": "https://www.orthodb.org/?gene=F1SUU1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46556", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46556", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46556:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46556:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23142", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23142", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020951044", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951044", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FGY6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKL4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FKL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FKL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPREVKDRILENISLSVKKLQSYFAACEDETPAIRNHDKVLQRLCEHLDHALLYGLQDLSSGYWVLVVHFTRREAVKQIEVLQHVATNLGRSRAWLYLALNENSLESYLRLFQENLALLHKYYVKNALVCSHDHLTLFLTLVSGLEFIRFDLDLDAPYLDLAPYMPDYYKPQYLLDFEDRLPSSVHGSDSLSLNSFNSVTSTTLEWDDSAIAPSSEDYDFGDVFPAVPSVPSTDWEDGDLTDTVSGPRSTASDPTSSKASTKSPTQRHNPFNEDQAETVSSSDTTPVHTTAQEKGESHTPDLPDPCTELEVIRVTKKKKTGKKKKPRSDEEASPLHPASTQHACARRGNGDGLLSSPGPGRGSPDTTLASLPQQGGGPSSTAEGGERSEPGQVGLLIPAMKDTSMECLGQPLSKVIDQLNGQLDPSTWRSRVEPPDQSFRTGSPGDRDAPEKPPFSDFSEGLPAPMDFYRFTVESPSAVTAGGGNHDPAGPGQPLHVPGGPAAAGQEEEGGGGAGQAPRPLEDAPREAQEPKAQELETQTPPVGEGPGPEPESQEALCRLKGDRSSPCLSSAEDSGVDEGQGSPSEMTHSAEFRVDNNHLLLLMIHVFRENEEQLFKMIRMSTGHMEGNLQLLYVLLTDCYVYLLRKGATEKPYLVEEAVSYNELDYVSVGLDQQTVKLVCTNRRKQFLLDTADVALADFFLASLKSAMIKGCREPPYPSILTDATMEKLALAKFVAQESRCEATAVTVRFYGLVHWEDPLDECLGPMPCHCSPPEGSIITKEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVTPLLSVNMGGEQCGGCRRSNTTDRPHAFQVVLADRPCLELSAESEAEMADWMQHLCQAVSKGVIPQGVAPSPCIPCCLVITDDRLFTCHEDCQTSFFRSLGTAKLADISAVSIEPGREYCVLEFSQDSQLPLPPWVIYLSCSSELDRLLSALNSGWKTIYQVDLPHRAIPEASSKKFEDALSLIHSAWQRSDSLCRGRASRDPWC", "length": 1027, "header": "tr|F1SUU1-1|F1SUU1_PIG Isoform 1 of Pleckstrin homology domain-containing family M member 2 OS=Sus scrofa OX=9823 GN=PLEKHM2 PE=4 SV=4 CANONICAL=F1SUU1-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FGY6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1/entry#A0A8W4FGY6-1", "sequence": { "sequence": "MEPREVKDRILENISLSVKKLQSYFAACEDETPAIRNHDKVLQRLCEHLDHALLYGLQDLSSGYWVLVVHFTRREAVKQIEVLQHVATNLGRSRAWLYLALNENSLESYLRLFQENLALLHKYYVKNALVCSHDHLTLFLTLVSGLEFIRFDLDLDAPYLDLAPYMPDYYKPQYLLDFEDRLPSSVHGSDSLSLNSFNSVTSTTLEWDDSAIAPSSEDGDLTDTVSGPRSTASDPTSSKASTKSPTQRHNPFNEDQAETVSSSDTTPVHTTAQEKGESHTPDLPDPCTELEVIRVTKKKKTGKKKKPRSDEEASPLHPASTQHACARRGNGDGLLSSPGPGRGSPDTTLASLPQQGGGPSSTAEGGERSEPGQVGLLIPAMKDTSMECLGQPLSKVIDQLNGQLDPSTWRSRVEPPDQSFRTGSPGDRDAPEKPPFSDFSEGLPAPMDFYRFTVESPSAVTAGGGNHDPAGPGQPLHVPGGPAAAGQEEEGGGGAGQAPRPLEDAPREAQEPKAQELETQTPPVGEGPGPEPESQEALCRLKGDRSSPCLSSAEDSGVDEGQGSPSEMTHSAEFRVDNNHLLLLMIHVFRENEEQLFKMIRMSTGHMEGNLQLLYVLLTDCYVYLLRKGATEKPYLVEEAVSYNELDYVSVGLDQQTVKLVCTNRRKQFLLDTADVALADFFLASLKSAMIKGCREPPYPSILTDATMEKLALAKFVAQESRCEATAVTVRFYGLVHWEDPLDECLGPMPCHCSPPEGSIITKEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVTPLLSVNMGGEQCGGCRRSNTTDRPHAFQVVLADRPCLELSAESEAEMADWMQHLCQAVSKGVIPQGVAPSPCIPCCLVITDDRLFTCHEDCQTSFFRSLGTAKLADISAVSIEPGREYCVLEFSQDSQLPLPPWVIYLSCSSELDRLLSALNSGWKTIYQVDLPHRAIPEASSKKFEDALSLIHSAWQRSDSLCRGRASRDPWC", "length": 1007, "header": "tr|A0A8W4FGY6-1|F1SUU1_PIG Computationally mapped isoform of Pleckstrin homology domain-containing family M member 2 OS=Sus scrofa OX=9823 GN=PLEKHM2 PE=4 SV=1 CANONICAL=F1SUU1-1" }, "locus": { "chromosome": "6", "start_pos": 74906908, "end_pos": 74865200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000102680.1", "url": "https://www.ensembl.org/id/ENSSSCT00000102680.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078696.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078696.1" } ] } }, { "isoform_ac": "A0A8W4FKL4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1/entry#A0A8W4FKL4-1", "sequence": { "sequence": "MEPREVKDRILENISLSVKKLQSYFAACEDETPAIRNHDKVLQRLCEHLDHALLYGLQDLSSGYWVLVVHFTRREAVKQIEVLQHVATNLGRSRAWLYLALNENSLESYLRLFQENLALLHKYYVKNALVCSHDHLTLFLTLVSGLEFIRFDLDLDAPYLDLAPYMPDYYKPQYLLDFEDRLPSSVHGSDSLSLNSFNSVTSTTLEWDDSAIAPSSEDYDFGDVFPAVPSVPSTDWEDGDLTDTVSGPRSTASDPTSSKASTKSPTQRHNPFNEDQAETVSSSDTTPVHTTAQEKGESHTPDLPDPCTELEVIRVTKKKKTGKKKKPRSDEEQQGGGPSSTAEGGERSEPGQVGLLIPAMKDTSMECLGQPLSKVIDQLNGQLDPSTWRSRVEPPDQSFRTGSPGDRDAPEKPPFSDFSEGLPAPMDFYRFTVESPSAVTAGGGNHDPAGPGQPLHVPGGPAAAGQEEEGGGGAGQAPRPLEDAPREAQEPKAQELETQTPPVGEGPGPEPESQEALCRLKGDRSSPCLSSAEDSGVDEGQGSPSEMTHSAEFRVDNNHLLLLMIHVFRENEEQLFKMIRMSTGHMEGNLQLLYVLLTDCYVYLLRKGATEKPYLVEEAVSYNELDYVSVGLDQQTVKLVCTNRRKQFLLDTADVALADFFLASLKSAMIKGCREPPYPSILTDATMEKLALAKFVAQESRCEATAVTVRFYGLVHWEDPLDECLGPMPCHCSPPEGSIITKEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVTPLLSVNMGGEQCGGCRRSNTTDRPHAFQVVLADRPCLELSAESEAEMADWMQHLCQAVSKGVIPQGVAPSPCIPCCLVITDDRLFTCHEDCQTSFFRSLGTAKLADISAVSIEPGREYCVLEFSQDSQLPLPPWVIYLSCSSELDRLLSALNSGWKTIYQVDLPHRAIPEASSKKFEDALSLIHSAWQRSDSLCRGRASRDPWC", "length": 986, "header": "tr|A0A8W4FKL4-1|F1SUU1_PIG Computationally mapped isoform of Pleckstrin homology domain-containing family M member 2 OS=Sus scrofa OX=9823 GN=PLEKHM2 PE=4 SV=1 CANONICAL=F1SUU1-1" }, "locus": { "chromosome": "6", "start_pos": 74906908, "end_pos": 74865200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097363.1", "url": "https://www.ensembl.org/id/ENSSSCT00000097363.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078836.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078836.1" } ] } }, { "isoform_ac": "F1SUU1-1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1/entry#F1SUU1-1", "sequence": { "sequence": "MEPREVKDRILENISLSVKKLQSYFAACEDETPAIRNHDKVLQRLCEHLDHALLYGLQDLSSGYWVLVVHFTRREAVKQIEVLQHVATNLGRSRAWLYLALNENSLESYLRLFQENLALLHKYYVKNALVCSHDHLTLFLTLVSGLEFIRFDLDLDAPYLDLAPYMPDYYKPQYLLDFEDRLPSSVHGSDSLSLNSFNSVTSTTLEWDDSAIAPSSEDYDFGDVFPAVPSVPSTDWEDGDLTDTVSGPRSTASDPTSSKASTKSPTQRHNPFNEDQAETVSSSDTTPVHTTAQEKGESHTPDLPDPCTELEVIRVTKKKKTGKKKKPRSDEEASPLHPASTQHACARRGNGDGLLSSPGPGRGSPDTTLASLPQQGGGPSSTAEGGERSEPGQVGLLIPAMKDTSMECLGQPLSKVIDQLNGQLDPSTWRSRVEPPDQSFRTGSPGDRDAPEKPPFSDFSEGLPAPMDFYRFTVESPSAVTAGGGNHDPAGPGQPLHVPGGPAAAGQEEEGGGGAGQAPRPLEDAPREAQEPKAQELETQTPPVGEGPGPEPESQEALCRLKGDRSSPCLSSAEDSGVDEGQGSPSEMTHSAEFRVDNNHLLLLMIHVFRENEEQLFKMIRMSTGHMEGNLQLLYVLLTDCYVYLLRKGATEKPYLVEEAVSYNELDYVSVGLDQQTVKLVCTNRRKQFLLDTADVALADFFLASLKSAMIKGCREPPYPSILTDATMEKLALAKFVAQESRCEATAVTVRFYGLVHWEDPLDECLGPMPCHCSPPEGSIITKEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVTPLLSVNMGGEQCGGCRRSNTTDRPHAFQVVLADRPCLELSAESEAEMADWMQHLCQAVSKGVIPQGVAPSPCIPCCLVITDDRLFTCHEDCQTSFFRSLGTAKLADISAVSIEPGREYCVLEFSQDSQLPLPPWVIYLSCSSELDRLLSALNSGWKTIYQVDLPHRAIPEASSKKFEDALSLIHSAWQRSDSLCRGRASRDPWC", "length": 1027, "header": "tr|F1SUU1-1|F1SUU1_PIG Isoform 1 of Pleckstrin homology domain-containing family M member 2 OS=Sus scrofa OX=9823 GN=PLEKHM2 PE=4 SV=4 CANONICAL=F1SUU1-1" }, "locus": { "chromosome": "6", "start_pos": 74906908, "end_pos": 74865200, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003854.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003854.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003766.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003766.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 481, "start_aa": "Thr", "end_pos": 481, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr481", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 749, "start_aa": "Thr", "end_pos": 749, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr749", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FGY6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGY6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522681", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522681", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" } ], "pmid": "" }, { "name": "endosome membrane", "id": "GO:0010008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010008", "evidence": [ { "database": "UniProtKB", "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of protein localization", "id": "GO:0032880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032880", "evidence": [ { "database": "UniProtKB", "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" } ], "pmid": "" }, { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" } ], "pmid": "" }, { "name": "lysosome localization", "id": "GO:0032418", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032418", "evidence": [ { "database": "UniProtKB", "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" } ], "pmid": "" }, { "name": "natural killer cell mediated cytotoxicity", "id": "GO:0042267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042267", "evidence": [ { "database": "UniProtKB", "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinesin binding", "id": "GO:0019894", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019894", "evidence": [ { "database": "UniProtKB", "id": "F1SUU1", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 842, "end_pos": 844, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUU1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1027, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUU1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUU1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 780, "end_pos": 882, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUU1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUU1" }, { "id": "PS50826", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RUN", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 158, "start_aa": "Arg", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 481, 749 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 842, "end_pos": 844 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STE6-1", "uniprot_ac": "F1STE6", "uniprot_id": "F1STE6_PIG", "mass": { "chemical_mass": 26488.0, "monoisotopic_mass": 26488.0 }, "refseq": { "ac": "XP_003124940", "name": "thioredoxin domain-containing protein 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124940" }, "gene_names": [ { "name": "TXNDC9", "type": "recommended", "evidence": [ { "id": "F1STE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STE6" } ] }, { "name": "TXNDC9", "type": "synonym", "evidence": [ { "id": "XP_003124940", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124940" } ] } ], "protein_names": [ { "name": "Thioredoxin domain-containing protein 9", "type": "recommended", "evidence": [ { "id": "F1STE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STE6/entry#names_and_taxonomy" } ] }, { "name": "thioredoxin domain-containing protein 9", "type": "synonym", "evidence": [ { "id": "XP_003124940", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124940" } ] } ], "function": [ { "annotation": "Significantly diminishes the chaperonin TCP1 complex ATPase activity, thus negatively impacts protein folding, including that of actin or tubulin.", "evidence": [ { "database": "UniProtKB", "id": "F1STE6", "url": "https://www.uniprot.org/uniprotkb/F1STE6#function" }, { "database": "UniProtKB", "id": "ARBA00053682", "url": "https://www.uniprot.org/uniprotkb/ARBA00053682#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STE6", "url": "https://www.uniprot.org/uniprotkb/F1STE6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TXNDC9", "url": "https://www.uniprot.org/uniprotkb/F1STE6", "locus": { "chromosome": "3", "start_pos": 54947726, "end_pos": 54931806, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008181", "url": "https://www.ensembl.org/id/ENSSSCG00000008181" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008181", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008181", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02989", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02989", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520954", "url": "https://www.ncbi.nlm.nih.gov/gene/100520954", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013766", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013766", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036249", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036249", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520954", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520954", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CVIAFID", "url": "https://omabrowser.org/oma/group/CVIAFID/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STE6", "url": "https://www.orthodb.org/?gene=F1STE6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21148", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21148", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00085", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00085", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003124940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124940", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FHT1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FHT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STE6", "url": "https://www.uniprot.org/uniprotkb/F1STE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STE6-1", "url": "https://www.uniprot.org/uniprotkb/F1STE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEANASVDMFSKVLENQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLEALRKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESKKVVCHFYRDSTFRCKILDRHLAILSKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALVKDGKTQDFVVGFSDLGNTDDFTTETLEWRLGCSDILNYSGNLMEPPFQSQKKFGTNFTKLEKKTIRGKKYDSDSDDD", "length": 226, "header": "tr|F1STE6-1|F1STE6_PIG Isoform 1 of Thioredoxin domain-containing protein 9 OS=Sus scrofa OX=9823 GN=TXNDC9 PE=4 SV=1 CANONICAL=F1STE6-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FHT1-1", "url": "https://www.uniprot.org/uniprotkb/F1STE6/entry#A0A8W4FHT1-1", "sequence": { "sequence": "MEANASVDMFSKVLENQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLEALRKAQQQKQVTSLLCFLKLL", "length": 74, "header": "tr|A0A8W4FHT1-1|F1STE6_PIG Computationally mapped isoform of Thioredoxin domain-containing protein 9 OS=Sus scrofa OX=9823 GN=TXNDC9 PE=4 SV=1 CANONICAL=F1STE6-1" }, "locus": { "chromosome": "3", "start_pos": 54933884, "end_pos": 54933663, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000093121.1", "url": "https://www.ensembl.org/id/ENSSSCT00000093121.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078880.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078880.1" } ] } }, { "isoform_ac": "F1STE6-1", "url": "https://www.uniprot.org/uniprotkb/F1STE6/entry#F1STE6-1", "sequence": { "sequence": "MEANASVDMFSKVLENQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLEALRKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESKKVVCHFYRDSTFRCKILDRHLAILSKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALVKDGKTQDFVVGFSDLGNTDDFTTETLEWRLGCSDILNYSGNLMEPPFQSQKKFGTNFTKLEKKTIRGKKYDSDSDDD", "length": 226, "header": "tr|F1STE6-1|F1STE6_PIG Isoform 1 of Thioredoxin domain-containing protein 9 OS=Sus scrofa OX=9823 GN=TXNDC9 PE=4 SV=1 CANONICAL=F1STE6-1" }, "locus": { "chromosome": "3", "start_pos": 54943439, "end_pos": 54933663, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008960.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008960.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008734.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008734.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FHT1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FHT1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520954", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520954", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7EVQ7-1", "protein_name": "Thioredoxin domain-containing protein 9", "gene_name": "Txndc9", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRPRPQVVPSIVPPELLHLSLELREWPRICRAVPGVGVSASGRFRTMEGNGSIDMFSEVIENQFLQAAKLVESHLDSEIQKLDQIGEDELELLKEKRLAALRKAHQQKQEWLSKGHGEYREIASERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALLRDGKTQDYVVGFTDLGNTDDFNTETLEWRLGCSDVINYSGNLMEPPFQSQKKFGTNFTKLEKKTIQGKKYDSDSDDD", "length": 272 }, "evidence": [ { "id": "F1STE6", "url": "https://omabrowser.org/oma/group/F1STE6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1MYQ1-1", "protein_name": "Thioredoxin domain-containing protein 9", "gene_name": "TXNDC9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEANASVDMFSKVLENQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLEALKKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESKKVVCHFYRDSTFRCKILDRHLVILSKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALVKDGKTQDFVVGFSDLGNTDDFTTETLEWRLGCSDILNYSGNLMEPPFQSQKKFGTNFTKLEKKTIRGKKYDSDSDDD", "length": 226 }, "evidence": [ { "id": "F1STE6", "url": "https://omabrowser.org/oma/group/F1STE6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O14530-1", "protein_name": "Thioredoxin domain-containing protein 9", "gene_name": "TXNDC9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEADASVDMFSKVLEHQLLQTTKLVEEHLDSEIQKLDQMDEDELERLKEKRLQALRKAQQQKQEWLSKGHGEYREIPSERDFFQEVKESENVVCHFYRDSTFRCKILDRHLAILSKKHLETKFLKLNVEKAPFLCERLHIKVIPTLALLKDGKTQDYVVGFTDLGNTDDFTTETLEWRLGSSDILNYSGNLMEPPFQNQKKFGTNFTKLEKKTIRGKKYDSDSDDD", "length": 226 }, "evidence": [ { "id": "F1STE6", "url": "https://omabrowser.org/oma/group/F1STE6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O64628-1", "protein_name": "Thioredoxin domain-containing protein 9 homolog", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MANPIQEILEKQVLTVAKAMEDKIDDEIASLEKLDEDDLEVLRERRLKQMKKMAEKKKRWISLGHGEYSEIHSEKDFFSVVKASERVVCHFYRENWPCKVMDKHMSILAKQHIETRFVKIQAEKSPFLAERLKIVVLPTLALIKNTKVDDYVVGFNELGGKDDFSTEDLEERIARAQVIHYDGESSSLKPKSTTQVRRNVRQSARSDSDSE", "length": 211 }, "evidence": [ { "id": "F1STE6", "url": "https://omabrowser.org/oma/group/F1STE6/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q04004-1", "protein_name": "Phosducin-like protein 1", "gene_name": "PLP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MEDKLDRYYTNVLSNAEKDKHTTVDSDDKSSGEENLDELLNELDRELDEDHEFLSAYRSERLQQISDHLKQVKKNVEDDGYGRLQCIDNEADAIQICTKTTMVVIHFELETFGKCQYMNEKLENLAKRYLTTRFIKVNVQTCPFLVNKLNIKVLPFVVGYKNGLEKVRYVGFSKLGNDPNGFDIRRLEQSLAHSGVIEDTFEIRKHSSVNTERFASTNHDRSESDSDLDI", "length": 230 }, "evidence": [ { "id": "F1STE6", "url": "https://omabrowser.org/oma/group/F1STE6/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9CQ79-1", "protein_name": "Thioredoxin domain-containing protein 9", "gene_name": "Txndc9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEGNGSVDMFSEVLENQFLQAAKLVENHLDSEIQKLDQIGEDELELLKEKRLAALRKAQQQKQEWLSKGHGEYREIGSERDFFQEVKESEKVVCHFYRDTTFRCKILDRHLAILAKKHLETKFLKLNVEKAPFLCERLRIKVIPTLALLRDGKTQDYVVGFTDLGNTDDFTTETLEWRLGCSDVINYSGNLMEPPFQSQKKFGTNFTKLEKKTIRGKKYDSDSDDD", "length": 226 }, "evidence": [ { "id": "F1STE6", "url": "https://omabrowser.org/oma/group/F1STE6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VGV8-1", "protein_name": "Phosducin-like protein 3", "gene_name": "PhLP3", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MANILENQLFTAAKTIEQQLDQQLDRLDNLDSDDLKVLREQRLREMKDLNNKKQEWLRNGHGTYTELADEKEFFEMSKKSPNIVCHFYRDSTERCKIVDMHLKILAAKHVEAKFCKVNAEKTPFLTQRLRIKVIPTIALVKDSKTKDFIVGFTDLGNCDDFATEMLEWRIAHSGAIDYKGDLMQPPDVKRKPFINRPQKTIRGGYDSDDSDIDLDD", "length": 216 }, "evidence": [ { "id": "F1STE6", "url": "https://omabrowser.org/oma/group/F1STE6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1STE6", "url": "https://www.uniprot.org/uniprotkb/F1STE6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STE6", "url": "https://www.uniprot.org/uniprotkb/F1STE6" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1STE6", "url": "https://www.uniprot.org/uniprotkb/F1STE6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1STE6", "url": "https://www.uniprot.org/uniprotkb/F1STE6" } ], "pmid": "" }, { "name": "midbody", "id": "GO:0030496", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030496", "evidence": [ { "database": "UniProtKB", "id": "F1STE6", "url": "https://www.uniprot.org/uniprotkb/F1STE6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000226", "evidence": [ { "database": "UniProtKB", "id": "F1STE6", "url": "https://www.uniprot.org/uniprotkb/F1STE6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 186, "end_pos": 188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STE6" }, { "id": "PS51352", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51352" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Thioredoxin", "eco_id": "ECO_0000259", "start_pos": 52, "end_pos": 180, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 186, "end_pos": 188 }, { "start_pos": 205, "end_pos": 207 }, { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L6L6-1", "uniprot_ac": "I3L6L6", "uniprot_id": "I3L6L6_PIG", "mass": { "chemical_mass": 140302.0, "monoisotopic_mass": 140302.0 }, "refseq": {}, "gene_names": [ { "name": "AKNA", "type": "recommended", "evidence": [ { "id": "I3L6L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ] } ], "protein_names": [ { "name": "AT-hook transcription factor", "type": "synonym", "evidence": [ { "id": "I3L6L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6L6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AKNA", "url": "https://www.uniprot.org/uniprotkb/I3L6L6", "locus": { "chromosome": "1", "start_pos": 254945239, "end_pos": 254987764, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023894", "url": "https://www.ensembl.org/id/ENSSSCG00000023894" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023894", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023894", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR022150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21510", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21510", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21510:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21510:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12443", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12443", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "A0A8W4FI70", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FI70-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJB6", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FJB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FJB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6L6-1", "url": "https://www.uniprot.org/uniprotkb/I3L6L6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTEEEADEAPGGPEVQEAEESPPRLGYETDLSPGGNGNTSSTALGWDQPTGWVASDKQASEDKLPEHSEVNPTIDFSPARSWSSGTVSLNHPSDSLDSTWEGDADVPQPPALAETSPQSPSHHLLNPSDRTGGSVALATPTEFQESSAPPAQSLQCPADRWRGETTSLPCPQPGDQAWKRTRISPKPLPSRFTGSISPQSSSPRPARQGRPPPRPGATLAGHSSSDAPKYGRGRLNYPLPDFSKVGPRVKFPKDETYRPPKARSHSRLPEGPARPLIFKSPAEIVREVLLSSGEVSPRKDLPPTHPITKVPQEFQTPEQATKLVHQLQEDYHKLLTKYAEAENTIDQLRFGAKVNLYSDPPQPSRNIHTGTVPQATKVLSFTIPQPRSVERWPGPAEGLQASEAPGWPSTGGDLSPSSPASVAALGRLPENSSIAPDPPSAEWAQDLASQAGRFLAKVEVFAELIQAGRLTPGDQRKGFQRLKTAHVALEEEYLKACREQHLAEQLAGSKGTPRKFDPDRELEAEIFQLGIRLDELKDYMDQRQQEPEPGGSDVAQDSPPAMPSPHQPTDLPSPLEQAPTPALQTLCPELNTSSLEPHPLHVNLDLSATSNEVEDRPLGLPAPLRHKELQVEEDVHGLLERYLSVKPLPEAMRMEEEEGEGQGHTLQVDGQAPAPGRSATRLPTRQLLAMQAERGHRPPLEETGEQMTSVKPADSQASMAREGHLRGLGKAGVAPPGPRRPPHPQGTKSAASHQSSLTSLEGSGISERLPQKSLCQAGRPALEEPWMASPETDSGFVGSETSRVSPLAQTPEHRLTQISTPGTLAHSFTPSVPRDAASHHQTRGLPVPRRATEPSTPRSRTQRALSGQDSPLRQRAPSFCLERALAADVAAPGSAFKGRKRISEQLPRSTTISPTPTLAPAGAAPPRGPTESTSTFLLTRTGRDQAIRELQEEVSRLRLRLEDSLQQHPQASPERPASTFDRPARARDRPAGSWATWGSHYGSKSTERLSGEPGSAEQGRRRARSSSVPREVPRLSLSSESEPTSSRLFPEKGRTAEDSSQAARDGTREVASAGQPDRVTFQGQYTGQEYHVLTPKTVLRGNGPVSCPHCQPVRTQDPGGAVTKDPLGPSPAGTLQCPLCGQARSPSEGTGPDSATSAPEKAAPRRNAPSTSSPKQRSKQAGSPPRPPPGLWYLAAAPTAPVPPAFAYISSVPVMPYPSAAVYYAPLGPTSAPTAAEWPPTASSRPARGPRNSIQLDLEDLEELNKALSRAMQAAESVRSTTKHMSRSLSADLRQARGLRGSCLF", "length": 1305, "header": "tr|I3L6L6-1|I3L6L6_PIG Isoform 1 of AT-hook transcription factor OS=Sus scrofa OX=9823 GN=AKNA PE=4 SV=4 CANONICAL=I3L6L6-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FI70-1", "url": "https://www.uniprot.org/uniprotkb/I3L6L6/entry#A0A8W4FI70-1", "sequence": { "sequence": "MASSGMEVHWAEPGLGKGPRRRRWAWAEEGKDDNGSGTHSLGEEDPCPSATSPELLEDFCRAQQSLQPLAWGLDSQPDGHPDPESEESAEEESEAEDVDSPESSNVPLSWLPQQDPQVDMTEEEADEAPGGPEVQEAEESPPRLGYETDLSPGGNGNTSSTALGWDQPTGWVASDKQASEDKLPEHSEVNPTIDFSPARSWSSGTVSLNHPSDSLDSTWEGDADVPQPPALAETSPQSPSHHLLNPSDRTGGSVALATPTEFQESSAPPAQSLQCPADRWRGETTSLPCPQPGDQAWKRTRISPKPLPSRFTGSISPQSSSPRPARQGRPPPRPGATLAGHSSSDAPKYGRGRLNYPLPDFSKVGPRVKFPKDETYRPPKARSHSRLPEGPARPLIFKSPAEIVREVLLSSGEAAPKDLPPTHPITKVPQEFQTPEQATKLVHQLQEDYHKLLTKYAEAENTIDQLRFGAKVNLYSDPPQPSRNIHTGTVPQATKVLSFTIPQPRSVERWPGPAEGLQASEAPGWPSTGGDLSPSSPASVAALGRLPENSSIAPDPPSAEWAQDLASQAGRFLAKVEVFAELIQAGRLTPGDQRKGFQRLKTAHVALEEEYLKACREQHLAEQLAGSKGTPRKFDPDRELEAEIFQLGIRLDELKDYMDQRQQEPEPGGSDVAQDSPPAMPSPHQPTDLPSPLEQAPTPALQTLCPELNTSSLEPHPLHVNLDLSATSNEVEDRPLGLPAPLRHKELQVEEDVHGLLERYLSVKPLPEAMRMEEEEGEGQGHTLQVDGQAPAPGRSATRLPTRQLLAMQAERGHRPPLEYVSQPPPLVPEQLRHHRGGNCHGRPGSR", "length": 847, "header": "tr|A0A8W4FI70-1|I3L6L6_PIG Computationally mapped isoform of AT-hook transcription factor OS=Sus scrofa OX=9823 GN=AKNA PE=4 SV=1 CANONICAL=I3L6L6-1" }, "locus": { "chromosome": "1", "start_pos": 254987650, "end_pos": 254964416, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095680.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095680.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079141.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079141.1" } ] } }, { "isoform_ac": "A0A8W4FJB6-1", "url": "https://www.uniprot.org/uniprotkb/I3L6L6/entry#A0A8W4FJB6-1", "sequence": { "sequence": "MAAGGGTKRHFLMGPGATSQAIRELQEEVSRLRLRLEDSLQQHPQASPERPASTFDRPARARDRPAGSWATWGSHYGSKSTERLSGEPGSAEQGRRRARSSSVPREVPRLSLSSESEPTSSRLFPEKGRTAEDSSQAARDGTREVASAGQPDRVTFQGQYTGQEYHVLTPKTVLRGNGPVSCPHCQPVRTQDPGGAVTKDPLGPSPAGTLQCPLCGQARSPSEGTGPDSATSAPEKAAPRRNAPSTSSPKQRSKQAGSPPRPPPGLWYLAAAPTAPVPPAFAYISSVPVMPYPSAAVYYAPLGPTSAPTAAEWPPTASSRPARGPRNSIQLDLEDLEELNKALSRAMQAAESVRSTTKHMSRSLSADLRQARGLRGSCLF", "length": 380, "header": "tr|A0A8W4FJB6-1|I3L6L6_PIG Computationally mapped isoform of AT-hook transcription factor OS=Sus scrofa OX=9823 GN=AKNA PE=4 SV=1 CANONICAL=I3L6L6-1" }, "locus": { "chromosome": "1", "start_pos": 254957043, "end_pos": 254945242, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092904.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092904.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079418.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079418.1" } ] } }, { "isoform_ac": "I3L6L6-1", "url": "https://www.uniprot.org/uniprotkb/I3L6L6/entry#I3L6L6-1", "sequence": { "sequence": "MTEEEADEAPGGPEVQEAEESPPRLGYETDLSPGGNGNTSSTALGWDQPTGWVASDKQASEDKLPEHSEVNPTIDFSPARSWSSGTVSLNHPSDSLDSTWEGDADVPQPPALAETSPQSPSHHLLNPSDRTGGSVALATPTEFQESSAPPAQSLQCPADRWRGETTSLPCPQPGDQAWKRTRISPKPLPSRFTGSISPQSSSPRPARQGRPPPRPGATLAGHSSSDAPKYGRGRLNYPLPDFSKVGPRVKFPKDETYRPPKARSHSRLPEGPARPLIFKSPAEIVREVLLSSGEVSPRKDLPPTHPITKVPQEFQTPEQATKLVHQLQEDYHKLLTKYAEAENTIDQLRFGAKVNLYSDPPQPSRNIHTGTVPQATKVLSFTIPQPRSVERWPGPAEGLQASEAPGWPSTGGDLSPSSPASVAALGRLPENSSIAPDPPSAEWAQDLASQAGRFLAKVEVFAELIQAGRLTPGDQRKGFQRLKTAHVALEEEYLKACREQHLAEQLAGSKGTPRKFDPDRELEAEIFQLGIRLDELKDYMDQRQQEPEPGGSDVAQDSPPAMPSPHQPTDLPSPLEQAPTPALQTLCPELNTSSLEPHPLHVNLDLSATSNEVEDRPLGLPAPLRHKELQVEEDVHGLLERYLSVKPLPEAMRMEEEEGEGQGHTLQVDGQAPAPGRSATRLPTRQLLAMQAERGHRPPLEETGEQMTSVKPADSQASMAREGHLRGLGKAGVAPPGPRRPPHPQGTKSAASHQSSLTSLEGSGISERLPQKSLCQAGRPALEEPWMASPETDSGFVGSETSRVSPLAQTPEHRLTQISTPGTLAHSFTPSVPRDAASHHQTRGLPVPRRATEPSTPRSRTQRALSGQDSPLRQRAPSFCLERALAADVAAPGSAFKGRKRISEQLPRSTTISPTPTLAPAGAAPPRGPTESTSTFLLTRTGRDQAIRELQEEVSRLRLRLEDSLQQHPQASPERPASTFDRPARARDRPAGSWATWGSHYGSKSTERLSGEPGSAEQGRRRARSSSVPREVPRLSLSSESEPTSSRLFPEKGRTAEDSSQAARDGTREVASAGQPDRVTFQGQYTGQEYHVLTPKTVLRGNGPVSCPHCQPVRTQDPGGAVTKDPLGPSPAGTLQCPLCGQARSPSEGTGPDSATSAPEKAAPRRNAPSTSSPKQRSKQAGSPPRPPPGLWYLAAAPTAPVPPAFAYISSVPVMPYPSAAVYYAPLGPTSAPTAAEWPPTASSRPARGPRNSIQLDLEDLEELNKALSRAMQAAESVRSTTKHMSRSLSADLRQARGLRGSCLF", "length": 1305, "header": "tr|I3L6L6-1|I3L6L6_PIG Isoform 1 of AT-hook transcription factor OS=Sus scrofa OX=9823 GN=AKNA PE=4 SV=4 CANONICAL=I3L6L6-1" }, "locus": { "chromosome": "1", "start_pos": 254984297, "end_pos": 254945242, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028192.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028192.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019667.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019667.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1199, "start_aa": "Thr", "end_pos": 1199, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1199", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1230, "start_aa": "Thr", "end_pos": 1230, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1230", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 915, "start_aa": "Thr", "end_pos": 915, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr915", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 930, "start_aa": "Thr", "end_pos": 930, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr930", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FI70", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FI70" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" }, { "name": "microtubule", "id": "GO:0005874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005874", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" }, { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" }, { "name": "regulation of inflammatory response", "id": "GO:0050727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050727", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" }, { "name": "epithelial to mesenchymal transition", "id": "GO:0001837", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001837", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" }, { "name": "neuroblast division in subventricular zone", "id": "GO:0021849", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021849", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" }, { "name": "neuroblast delamination", "id": "GO:0060234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060234", "evidence": [ { "database": "UniProtKB", "id": "I3L6L6", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 38, "end_pos": 40, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 591, "end_pos": 593, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L6L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6L6" }, { "id": "PF12443", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12443" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AKNA", "eco_id": "ECO_0000259", "start_pos": 479, "end_pos": 577, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 915, 930, 1199, 1230 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 38, "end_pos": 40 }, { "start_pos": 431, "end_pos": 433 }, { "start_pos": 591, "end_pos": 593 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 4 }, { "field": "total_sites", "count": 4 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 4 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 4 }, { "field": "exact_o_linked_sites", "count": 4 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5T3-1", "uniprot_ac": "I3L5T3", "uniprot_id": "I3L5T3_PIG", "mass": { "chemical_mass": 33909.0, "monoisotopic_mass": 33909.0 }, "refseq": { "ac": "XP_003355972", "name": "rRNA 2'-O-methyltransferase fibrillarin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355972" }, "gene_names": [ { "name": "FBL", "type": "recommended", "evidence": [ { "id": "I3L5T3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ] }, { "name": "FBL", "type": "synonym", "evidence": [ { "id": "XP_003355972", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355972" } ] } ], "protein_names": [ { "name": "Fibrillarin", "type": "synonym", "evidence": [ { "id": "I3L5T3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5T3/entry#names_and_taxonomy" } ] }, { "name": "rRNA 2'-O-methyltransferase fibrillarin", "type": "synonym", "evidence": [ { "id": "XP_003355972", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355972" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FBL", "url": "https://www.uniprot.org/uniprotkb/I3L5T3", "locus": { "chromosome": "6", "start_pos": 48314783, "end_pos": 48326436, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030510", "url": "https://www.ensembl.org/id/ENSSSCG00000030510" } ] } } ], "crossref": [ { "id": "I3L5T3", "url": "https://alphafold.ebi.ac.uk/entry/I3L5T3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030510", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030510", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100626002", "url": "https://www.ncbi.nlm.nih.gov/gene/100626002", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000692", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000692", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020813", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020813", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626002", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626002", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L5T3", "url": "https://www.orthodb.org/?gene=I3L5T3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10335", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10335", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10335:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10335:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01269", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01269", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003355972", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003355972", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8W4FLP9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FLP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLP9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5T3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5T3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPGFSPRGGGFGGRGGFGDRGGRGGGRGGFGGGRGGFGGGRGRGGGFRGRGRGGGGGGRGGGFQSGGSRGRGRGGKKGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVKN", "length": 321, "header": "tr|I3L5T3-1|I3L5T3_PIG Isoform 1 of Fibrillarin OS=Sus scrofa OX=9823 GN=FBL PE=1 SV=3 CANONICAL=I3L5T3-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FLP9-1", "url": "https://www.uniprot.org/uniprotkb/I3L5T3/entry#A0A8W4FLP9-1", "sequence": { "sequence": "GFSPRGGGFGGRGGFGDRGGRGGGRGGFGGGRGGFGGGRGRGGGFRGRGRGGGGGGRGGGFQSGGSRGRGRGGKKGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVKN", "length": 318, "header": "tr|A0A8W4FLP9-1|I3L5T3_PIG Computationally mapped isoform of Fibrillarin OS=Sus scrofa OX=9823 GN=FBL PE=1 SV=1 CANONICAL=I3L5T3-1" }, "locus": { "chromosome": "6", "start_pos": 48320405, "end_pos": 48314865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105875.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105875.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080401.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080401.1" } ] } }, { "isoform_ac": "I3L5T3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5T3/entry#I3L5T3-1", "sequence": { "sequence": "MKPGFSPRGGGFGGRGGFGDRGGRGGGRGGFGGGRGGFGGGRGRGGGFRGRGRGGGGGGRGGGFQSGGSRGRGRGGKKGNQSGKNVMVEPHRHEGVFICRGKEDALVTKNLVPGESVYGEKRVSISEGDDKIEYRAWNPFRSKLAAAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDHAVVVGVYRPPPKVKN", "length": 321, "header": "tr|I3L5T3-1|I3L5T3_PIG Isoform 1 of Fibrillarin OS=Sus scrofa OX=9823 GN=FBL PE=1 SV=3 CANONICAL=I3L5T3-1" }, "locus": { "chromosome": "6", "start_pos": 48326314, "end_pos": 48314865, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022996.3", "url": "https://www.ensembl.org/id/ENSSSCT00000022996.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019383.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019383.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "A0A8W4FLP9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FLP9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626002", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626002", "resource": "KEGG Pathway" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "methyltransferase activity", "id": "GO:0008168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008168", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "ATPase binding", "id": "GO:0051117", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051117", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "TFIID-class transcription factor complex binding", "id": "GO:0001094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001094", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "rRNA methyltransferase activity", "id": "GO:0008649", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008649", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "histone H2AQ104 methyltransferase activity", "id": "GO:1990259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990259", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "Cajal body", "id": "GO:0015030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015030", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "box C/D methylation guide snoRNP complex", "id": "GO:0031428", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031428", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "granular component", "id": "GO:0001652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001652", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "rRNA methylation", "id": "GO:0031167", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031167", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "snoRNA localization", "id": "GO:0048254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048254", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "box C/D sno(s)RNA 3'-end processing", "id": "GO:0000494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000494", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" }, { "name": "ribosomal small subunit biogenesis", "id": "GO:0042274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042274", "evidence": [ { "database": "UniProtKB", "id": "I3L5T3", "url": "https://www.uniprot.org/uniprotkb/I3L5T3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5T3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 321, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5T3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5T3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L6E6-1", "uniprot_ac": "I3L6E6", "uniprot_id": "I3L6E6_PIG", "mass": { "chemical_mass": 24588.0, "monoisotopic_mass": 24588.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "[histone H3]-trimethyl-L-lysine(27) demethylase", "type": "recommended", "evidence": [ { "id": "I3L6E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6E6/entry#names_and_taxonomy" } ] }, { "name": "1.14.11.68", "type": "synonym", "evidence": [ { "id": "I3L6E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L6E6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L6E6", "url": "https://www.uniprot.org/uniprotkb/I3L6E6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/I3L6E6", "locus": {} } ], "crossref": [ { "id": "I3L6E6", "url": "https://alphafold.ebi.ac.uk/entry/I3L6E6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025253", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025253", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14017:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14017:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "60224", "url": "https://www.rhea-db.org/rhea/60224", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FPB4", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FPB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FPB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6E6", "url": "https://www.uniprot.org/uniprotkb/I3L6E6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L6E6-1", "url": "https://www.uniprot.org/uniprotkb/I3L6E6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSCGVSLAAAAAVFGDEEKKMAAGKASGETKESSLSLTTEEKEALSGMDSRLFGFVSLHEDGARTKTLLGKAVRCYESLILKAEGKVESEFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDYWQNATFLYGLGLVYFYYNAFHWAIKAFREVLYVDPSFCRAKEIHLRLGLMFKVNTDYVSSLKHFQLALIDSNPCTLSSVEIQFHIAHLYETQTIS", "length": 218, "header": "tr|I3L6E6-1|I3L6E6_PIG Isoform 1 of [histone H3]-trimethyl-L-lysine(27) demethylase OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=I3L6E6-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FPB4-1", "url": "https://www.uniprot.org/uniprotkb/I3L6E6/entry#A0A8W4FPB4-1", "sequence": { "sequence": "MKSCGVSLAAAAAVFGDEEKKMAAGKASGETKESSLSLTTEEKEALSGMDSRLFGFVSLHEDGARTKTLLGKHYLLIRDTTVYSLTTGRMLPFYMALVWFTSTTMRFTGQLKHFEKCYMLIPAFVEPRKFIYVLG", "length": 135, "header": "tr|A0A8W4FPB4-1|I3L6E6_PIG Computationally mapped isoform of [histone H3]-trimethyl-L-lysine(27) demethylase OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=I3L6E6-1" }, "locus": { "chromosome": "Y", "start_pos": 9087621, "end_pos": 9009243, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000101381.1", "url": "https://www.ensembl.org/id/ENSSSCT00000101381.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000080145.1", "url": "https://www.ensembl.org/id/ENSSSCP00000080145.1" } ] } }, { "isoform_ac": "I3L6E6-1", "url": "https://www.uniprot.org/uniprotkb/I3L6E6/entry#I3L6E6-1", "sequence": { "sequence": "MKSCGVSLAAAAAVFGDEEKKMAAGKASGETKESSLSLTTEEKEALSGMDSRLFGFVSLHEDGARTKTLLGKAVRCYESLILKAEGKVESEFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDYWQNATFLYGLGLVYFYYNAFHWAIKAFREVLYVDPSFCRAKEIHLRLGLMFKVNTDYVSSLKHFQLALIDSNPCTLSSVEIQFHIAHLYETQTIS", "length": 218, "header": "tr|I3L6E6-1|I3L6E6_PIG Isoform 1 of [histone H3]-trimethyl-L-lysine(27) demethylase OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=I3L6E6-1" }, "locus": { "chromosome": "Y", "start_pos": 9087621, "end_pos": 8988440, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000031202.3", "url": "https://www.ensembl.org/id/ENSSSCT00000031202.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019597.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019597.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L6E6", "url": "https://www.uniprot.org/uniprotkb/I3L6E6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "histone H3K27me2/H3K27me3 demethylase activity", "id": "GO:0071558", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071558", "evidence": [ { "database": "UniProtKB", "id": "I3L6E6", "url": "https://www.uniprot.org/uniprotkb/I3L6E6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "60224", "name": "", "equation": "N(6),N(6),N(6)-trimethyl-L-lysyl(27)-[histone H3] + 2 2-oxoglutarate + 2 O2 = N(6)-methyl-L-lysyl(27)-[histone H3] + 2 formaldehyde + 2 succinate + 2 CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "60224", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60224" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L6E6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 218, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L6E6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L6E6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L559-1", "uniprot_ac": "I3L559", "uniprot_id": "I3L559_PIG", "mass": { "chemical_mass": 47627.0, "monoisotopic_mass": 47627.0 }, "refseq": { "ac": "XP_020934484", "name": "carboxypeptidase A4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934484" }, "gene_names": [ { "name": "CPA4", "type": "recommended", "evidence": [ { "id": "I3L559", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L559" } ] }, { "name": "CPA4", "type": "synonym", "evidence": [ { "id": "XP_020934484", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934484" } ] } ], "protein_names": [ { "name": "Carboxypeptidase A1", "type": "recommended", "evidence": [ { "id": "I3L559", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L559/entry#names_and_taxonomy" } ] }, { "name": "3.4.17.1", "type": "synonym", "evidence": [ { "id": "I3L559", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L559/entry#names_and_taxonomy" } ] }, { "name": "carboxypeptidase A4", "type": "synonym", "evidence": [ { "id": "XP_020934484", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934484" } ] } ], "function": [ { "annotation": "Carboxypeptidase that catalyzes the release of a C-terminal amino acid, but has little or no action with -Asp, -Glu, -Arg, -Lys or -Pro. Catalyzes the conversion of leukotriene C4 to leukotriene F4 via the hydrolysis of an amide bond.", "evidence": [ { "database": "UniProtKB", "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559#function" }, { "database": "UniProtKB", "id": "ARBA00059652", "url": "https://www.uniprot.org/uniprotkb/ARBA00059652#function" }, { "database": "UniProtKB", "id": "F1SNE0", "url": "https://www.uniprot.org/uniprotkb/F1SNE0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CPA4", "url": "https://www.uniprot.org/uniprotkb/I3L559", "locus": { "chromosome": "18", "start_pos": 18530867, "end_pos": 18553634, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016555", "url": "https://www.ensembl.org/id/ENSSSCG00000016555" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016555", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016555", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03870", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03870", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516122", "url": "https://www.ncbi.nlm.nih.gov/gene/100516122", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000834", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000834", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003146", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003146", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034248", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034248", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516122", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516122", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DYQKDPA", "url": "https://omabrowser.org/oma/group/DYQKDPA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L559", "url": "https://www.orthodb.org/?gene=I3L559", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11705", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11705", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11705:SF136", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11705:SF136", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02244", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02244", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934484", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934484", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "50740", "url": "https://www.rhea-db.org/rhea/50740", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SNE0", "url": "https://www.uniprot.org/uniprotkb/F1SNE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SNE0-1", "url": "https://www.uniprot.org/uniprotkb/F1SNE0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L559-1", "url": "https://www.uniprot.org/uniprotkb/I3L559-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKWILFFGALIGSGICGREKFFGDQVFRINVRNGDEISKLNQLVNSDNFKLNFWKYPSTFGRPVDVLVPSVNLQPVKSFLKSQGLEYSVTIEDLQALLDNEDEEMQHNKGQERSSNNFNYGAYHSLEAIYHEMESIARDFPNLASRVKIGHSFENRSMYVLKFSTGEGRPRPAIWLNAGIHSREWISQATAMWTSRKIVSDYGKDPAITSILEKMDIFLLPVANPDGYVYTQTQNRFWRKTRSLNPGTHCIGTDPNRNWNVSFAGEGASNNPCSEVYHGAYANSEVEVKSVVDFIQGHGNFKSFIDLHSYSQLLMYPYGYTVKKAPDAEELDEVARRAAKALASLSGTEYQVGPTCTTVYPASGSSIDWAYDNGIKYAFTFELRDTGHYGFLLPANQIIPTAEETWLGLKTIMEHVRDNLY", "length": 421, "header": "tr|I3L559-1|I3L559_PIG Isoform 1 of Carboxypeptidase A1 OS=Sus scrofa OX=9823 GN=CPA4 PE=3 SV=2 CANONICAL=I3L559-1" }, "isoforms": [ { "isoform_ac": "F1SNE0-1", "url": "https://www.uniprot.org/uniprotkb/I3L559/entry#F1SNE0-1", "sequence": { "sequence": "MKWILFFGALIGSGICGREKFFGDQVFRINVRNGDEISKLNQLVNSDNFKLNFWKYPSTFGRPVDVLVPSVNLQPVKSFLKSQGLEYSVTIEDLQIYHEMESIARDFPNLASRVKIGHSFENRSMYVLKFSTGEGRPRPAIWLNAGIHSREWISQATAMWTSRKIVSDYGKDPAITSILEKMDIFLLPVANPDGYVYTQTQNRFWRKTRSLNPGTHCIGTDPNRNWNVSFAGEGASNNPCSEVYHGAYANSEVEVKSVVDFIQGHGNFKSFIDLHSYSQLLMYPYGYTVKKAPDAEELDEVARRAAKALASLSGTEYQVGPTCTTVYPASGSSIDWAYDNGIKYAFTFELRDTGHYGFLLPANQIIPTAEETWLGLKTIMEHVRDNLY", "length": 388, "header": "tr|F1SNE0-1|I3L559_PIG Computationally mapped isoform of Carboxypeptidase A1 OS=Sus scrofa OX=9823 GN=CPA4 PE=3 SV=4 CANONICAL=I3L559-1" }, "locus": { "chromosome": "18", "start_pos": 18553504, "end_pos": 18531871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018025.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018025.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017540.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017540.4" } ] } }, { "isoform_ac": "I3L559-1", "url": "https://www.uniprot.org/uniprotkb/I3L559/entry#I3L559-1", "sequence": { "sequence": "MKWILFFGALIGSGICGREKFFGDQVFRINVRNGDEISKLNQLVNSDNFKLNFWKYPSTFGRPVDVLVPSVNLQPVKSFLKSQGLEYSVTIEDLQALLDNEDEEMQHNKGQERSSNNFNYGAYHSLEAIYHEMESIARDFPNLASRVKIGHSFENRSMYVLKFSTGEGRPRPAIWLNAGIHSREWISQATAMWTSRKIVSDYGKDPAITSILEKMDIFLLPVANPDGYVYTQTQNRFWRKTRSLNPGTHCIGTDPNRNWNVSFAGEGASNNPCSEVYHGAYANSEVEVKSVVDFIQGHGNFKSFIDLHSYSQLLMYPYGYTVKKAPDAEELDEVARRAAKALASLSGTEYQVGPTCTTVYPASGSSIDWAYDNGIKYAFTFELRDTGHYGFLLPANQIIPTAEETWLGLKTIMEHVRDNLY", "length": 421, "header": "tr|I3L559-1|I3L559_PIG Isoform 1 of Carboxypeptidase A1 OS=Sus scrofa OX=9823 GN=CPA4 PE=3 SV=2 CANONICAL=I3L559-1" }, "locus": { "chromosome": "18", "start_pos": 18553504, "end_pos": 18531871, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029585.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029585.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019158.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019158.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 355, "start_aa": "Thr", "end_pos": 355, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr355", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SNE0", "url": "https://www.uniprot.org/uniprotkb/F1SNE0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516122", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516122", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MKK2-1", "protein_name": "Carboxypeptidase A4 isoform X1", "gene_name": "Cpa4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MRWLLFLGALIGSGVCSRDKFFGDQVFRINVRNGDEIRKLTQLVNSDHFKLNVWKSPSTFDRPVDILVPSVSLLPVKSFLKSQGLDYSVTIEDLQALLDNEDEEMQHSEGRERSGGNFSYGSYHSLEAIYHEMDSIATDFPELASRVKIGETFEKRPMYVLKFSTGGGKKRPAIWLNAGIHSREWISQATAIWTARKIVTDYQKDPAVTSILEKVDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSRCIGVDPNRNWNASFGGEGASDNPCSEVYHGSHPNSEVEVKSVVDFIQNHGHFKCFIDLHSYSQLLMYPYGYTVKKAPDAEELDDVARSAAEALASHSGTKYRVGPTCTTVYPASGSSIDWAYDNGIKYAFTFELRDTGHYGFLLPANQIIPTAEETWLGLKAIMEHVRDNLY", "length": 421 }, "evidence": [ { "id": "I3L559", "url": "https://omabrowser.org/oma/group/I3L559/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P19222-1", "protein_name": "Carboxypeptidase A2", "gene_name": "Cpa2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLTLLLAALLGYIYCQETFVGDQVLEIIPSHEEQIRTLLQLEAEEHLELDFWKSPTIPGETVHVRVPFASIQAVKVFLESQGIDYSIMIEDVQVLLDQEREEMLFNQQRERGGNFNFEAYHTLEEIYQEMDNLVAENPGLVSKVNLGSSFENRPMNVLKFSTGGDKPAIWLDAGIHAREWVTQATALWTANKIASDYGTDPAITSLLNTLDIFLLPVTNPDGYVFSQTTNRMWRKTRSKRSGSGCVGVDPNRNWDANFGGPGASSSPCSDSYHGPKPNSEVEVKSIVDFIKSHGKVKAFITLHSYSQLLMFPYGYKCTKPDDFNELDEVAQKAAQALKRLHGTSYKVGPICSVIYQASGGSIDWAYDLGIKYSFAFELRDTAFYGFLLPAKQILPTAEETWLGLKTIMEHVRDHPY", "length": 417 }, "evidence": [ { "id": "I3L559", "url": "https://omabrowser.org/oma/group/I3L559/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P8K8-1", "protein_name": "Carboxypeptidase A4", "gene_name": "Cpa4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKWLLFFGALIGAGICGRDKFFGDQVFRINVRNGDEIRKLTELVNSDHLKLSVWKSPSTFDRPVDILVPSVSLLPVKSFLKSQGLDYSVTIEDLQALLDNEDEEMQHNEGIERSGDFNYGAYHPLEAIYHEMDSIATDFPELVSRVKIGETFEKRPMYVLKFSTGGGKKRPAIWLNAGIHAREWISQATAIWTARKIVTDYKKDPAITSILKKVDIFLLPVANPDGYVYTQSQNRLWRKTRSRNPGSRCVGADPNRNWNASFAGEGTSDNPCSEVYHGSHPNSEVEVKSVVDFIQKHGNFKCFIDLHSYSQLLMYPYGYTVKKAPDAEELDDVARNAAQALASLSGTKYRVGPTCTTVYPASGSSVDWAYDNGIKYAFTFELRDTGYYGFLLPASQIIPTAEETWLGLKTIMEHVRDHLY", "length": 420 }, "evidence": [ { "id": "I3L559", "url": "https://omabrowser.org/oma/group/I3L559/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UI42-1", "protein_name": "Carboxypeptidase A4", "gene_name": "CPA4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRWILFIGALIGSSICGQEKFFGDQVLRINVRNGDEISKLSQLVNSNNLKLNFWKSPSSFNRPVDVLVPSVSLQAFKSFLRSQGLEYAVTIEDLQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARRVKIGHSFENRPMYVLKFSTGKGVRRPAVWLNAGIHSREWISQATAIWTARKIVSDYQRDPAITSILEKMDIFLLPVANPDGYVYTQTQNRLWRKTRSRNPGSSCIGADPNRNWNASFAGKGASDNPCSEVYHGPHANSEVEVKSVVDFIQKHGNFKGFIDLHSYSQLLMYPYGYSVKKAPDAEELDKVARLAAKALASVSGTEYQVGPTCTTVYPASGSSIDWAYDNGIKFAFTFELRDTGTYGFLLPANQIIPTAEETWLGLKTIMEHVRDNLY", "length": 421 }, "evidence": [ { "id": "I3L559", "url": "https://omabrowser.org/oma/group/I3L559/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559" } ], "pmid": "" }, { "name": "hormone catabolic process", "id": "GO:0042447", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042447", "evidence": [ { "database": "UniProtKB", "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559" } ], "pmid": "" }, { "name": "peptide catabolic process", "id": "GO:0043171", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043171", "evidence": [ { "database": "UniProtKB", "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559" } ], "pmid": "" }, { "name": "metallocarboxypeptidase activity", "id": "GO:0004181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004181", "evidence": [ { "database": "UniProtKB", "id": "I3L559", "url": "https://www.uniprot.org/uniprotkb/I3L559" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "50740", "name": "", "equation": "leukotriene C4 + H2O = leukotriene F4 + glycine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "50740", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/50740" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L559", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L559" }, { "id": "PS52035", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52035" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase M14", "eco_id": "ECO_0000259", "start_pos": 122, "end_pos": 416, "start_aa": "Ala", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 355 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 260, "end_pos": 262 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ92-1", "uniprot_ac": "F1SQ92", "uniprot_id": "F1SQ92_PIG", "mass": { "chemical_mass": 35419.0, "monoisotopic_mass": 35419.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100519839", "type": "recommended", "evidence": [ { "id": "F1SQ92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ92" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SQ92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ92/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ92", "url": "https://www.uniprot.org/uniprotkb/F1SQ92#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ92", "url": "https://www.uniprot.org/uniprotkb/F1SQ92" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100519839", "url": "https://www.uniprot.org/uniprotkb/F1SQ92", "locus": {} } ], "crossref": [ { "id": "F1SQ92", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ92", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000353", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000353", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CDSDIDH", "url": "https://omabrowser.org/oma/group/CDSDIDH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF74", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF74", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SQ92", "url": "https://www.uniprot.org/uniprotkb/F1SQ92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ92-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNHSTITTFIILGLTDDPQLEILVFAFLLITYVFSVIENLTIISLVLVDSHLKTAMYFFLQNFSFLEISFTTACVPTYLHIISSGDKTITINACFSQIFFFVLFAATEYFLLAVMSYDRYVAICKPLHYMSIMNSRVCRNLILCCWVSGLLIILPPLGLSLRLEFCDSVIDHFVCDASPILKNSCSDTWFIEQLVIVCAVLTFLVTLVCVVLSYIYIIRTILRFPSAHQRKKAFSTCSSHMIVVSMTYGSCIFMYIKPSAKDEVAINKGVSLLPISVAPLLNPFIYTLRNKQVKKSFRDTLKRFVFHSKK", "length": 311, "header": "tr|F1SQ92-1|F1SQ92_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100519839 PE=3 SV=2 CANONICAL=F1SQ92-1" }, "isoforms": [ { "isoform_ac": "F1SQ92-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ92/entry#F1SQ92-1", "sequence": { "sequence": "MRNHSTITTFIILGLTDDPQLEILVFAFLLITYVFSVIENLTIISLVLVDSHLKTAMYFFLQNFSFLEISFTTACVPTYLHIISSGDKTITINACFSQIFFFVLFAATEYFLLAVMSYDRYVAICKPLHYMSIMNSRVCRNLILCCWVSGLLIILPPLGLSLRLEFCDSVIDHFVCDASPILKNSCSDTWFIEQLVIVCAVLTFLVTLVCVVLSYIYIIRTILRFPSAHQRKKAFSTCSSHMIVVSMTYGSCIFMYIKPSAKDEVAINKGVSLLPISVAPLLNPFIYTLRNKQVKKSFRDTLKRFVFHSKK", "length": 311, "header": "tr|F1SQ92-1|F1SQ92_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100519839 PE=3 SV=2 CANONICAL=F1SQ92-1" }, "locus": { "chromosome": "5", "start_pos": 21040223, "end_pos": 21039291, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000375.2", "url": "https://www.ensembl.org/id/ENSSSCT00000000375.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000369.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000369.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ92", "url": "https://www.uniprot.org/uniprotkb/F1SQ92" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SQ92", "url": "https://www.uniprot.org/uniprotkb/F1SQ92" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SQ92", "url": "https://www.uniprot.org/uniprotkb/F1SQ92" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQ92", "url": "https://www.uniprot.org/uniprotkb/F1SQ92" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ92-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ92-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ92" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ92" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 287, "start_aa": "Glu", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQ96-1", "uniprot_ac": "F1SQ96", "uniprot_id": "F1SQ96_PIG", "mass": { "chemical_mass": 35451.0, "monoisotopic_mass": 35451.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SQ96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ96/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ96", "url": "https://www.uniprot.org/uniprotkb/F1SQ96#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQ96", "url": "https://www.uniprot.org/uniprotkb/F1SQ96" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SQ96", "locus": {} } ], "crossref": [ { "id": "F1SQ96", "url": "https://alphafold.ebi.ac.uk/entry/F1SQ96", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000035206", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000035206", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RIPSMSQ", "url": "https://omabrowser.org/oma/group/RIPSMSQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF79", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF79", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SQ96", "url": "https://www.uniprot.org/uniprotkb/F1SQ96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQ96-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNYTEVTEFILLGLTDDPQWQAVLFTFLLVTYMLSVTGNLTIIALTLSDPHLQTPMYFFLRNFAFLEISFTSVCIPRFLVTLVTGDRTISYDGCVAQLFFFIFLGVTEFYLLAAMSYDRYVAICKPLHYTIIMSSRVCALLVFSSWLAGFLIIFPPIILLLQLEFCASNIIDHFICDASPILQLSCSSTRLLELMAFFLAVVTLMVTLTLVILSYTYIVRTILRLPSTSQRKKAFSTCSSHMIVVSLSYGSCIFMYIKPSARERVTLSKGVAVLNTSVVPLLNPFIYTLRNQQVKQAFRNMVQRRAFSSNQ", "length": 312, "header": "tr|F1SQ96-1|F1SQ96_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SQ96-1" }, "isoforms": [ { "isoform_ac": "F1SQ96-1", "url": "https://www.uniprot.org/uniprotkb/F1SQ96/entry#F1SQ96-1", "sequence": { "sequence": "MRNYTEVTEFILLGLTDDPQWQAVLFTFLLVTYMLSVTGNLTIIALTLSDPHLQTPMYFFLRNFAFLEISFTSVCIPRFLVTLVTGDRTISYDGCVAQLFFFIFLGVTEFYLLAAMSYDRYVAICKPLHYTIIMSSRVCALLVFSSWLAGFLIIFPPIILLLQLEFCASNIIDHFICDASPILQLSCSSTRLLELMAFFLAVVTLMVTLTLVILSYTYIVRTILRLPSTSQRKKAFSTCSSHMIVVSLSYGSCIFMYIKPSARERVTLSKGVAVLNTSVVPLLNPFIYTLRNQQVKQAFRNMVQRRAFSSNQ", "length": 312, "header": "tr|F1SQ96-1|F1SQ96_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SQ96-1" }, "locus": { "chromosome": "AEMK02000497.1", "start_pos": 172295, "end_pos": 171360, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000371.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000371.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000365.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000365.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQ96", "url": "https://www.uniprot.org/uniprotkb/F1SQ96" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ADY4-1", "protein_name": "Olfactory receptor", "gene_name": "Or6c75", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNSTAVTNFILLGLTNDPRWQFVVFTFLLVTYLLSLTGNLIIIILTLSDVHLMTPMYFFLRNFSLLEISFTSVCIPRFLVTIVTGDRTISYNGCVAQLFFFIFLGVTEFYLLAAMSYDRYVAICKPLHYTTIMSNRVCILLVFSSWFAGFLIIFPPIILLLQLDFCASNIIDHFICDSSPILQLSCSNSHFLELMAFLLAVITLMVTLTLIILSYTNIIRTILRIPSTNQRKKAFSTCSSHMIVVSLSYGSCIFMYIKPSARERVTLSKGVAVLNTSVAPLLNPFIYTLRNQQVKQAFKTMIQRILFSLKKFT", "length": 314 }, "evidence": [ { "id": "F1SQ96", "url": "https://omabrowser.org/oma/group/F1SQ96/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6NL08-1", "protein_name": "Olfactory receptor 6C75", "gene_name": "OR6C75", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRNSTAVTDFILLGLTSDPQWQVVLFIFLLVTYMLSVTGNLIIITLTLSDPHLQTPMYFFLRNFSFLEISFTSVCIPRFLVTVVTGNRTISYNGCVAQLFFFIFLGVTEFYLLAAMSYDRCMAICKPLHYTIIMSTRVCTLLVFSSWLAGFLIIFPPVMLLLQLDFCASNVIDHFICDSSPMLQLSCTNTHFLELMAFFLAVVTLMVTLTLVILSYTNIIRTILKIPSMSQRKKAFSTCSSHMIVVSISYSSCIFMYIKTSARERVTLSKGVAVLNTSVAPLLNPFIYTLRNKQVKQAFKSMVQKMIFSLNK", "length": 312 }, "evidence": [ { "id": "F1SQ96", "url": "https://omabrowser.org/oma/group/F1SQ96/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E1B7L5-1", "protein_name": "Olfactory receptor", "gene_name": "OR6C75", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRNYTEVTEFILLGLTSDPKWQVVLFLFLLVTYMLSVTGNLVIITLTLSDPHLQTPMYFFLRNFSFLEISFTSVCIPRFLVAIMTEDRTISYNGCVAQLFFFIFLGVTEFYLLAAMSYDRYVAICKPLHYTTIMSSKVCILLVFSSWLAGFLIIFPPIILLLRLDFCGSNIVDHFICDASPILQLSCTSTHFLELMALFLAVVTLMVTLTLVILSYTYIIQTILRIPSTNQRKKAFSTCSSHMIVVSLSYGSCIFMYIKPSARERVTLSKGVAVLNTSVAPLLNPFIYTLRNQQVQQAFKNMVQRIAFSSNK", "length": 312 }, "evidence": [ { "id": "F1SQ96", "url": "https://omabrowser.org/oma/group/F1SQ96/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7TRI0-1", "protein_name": "Olfactory receptor", "gene_name": "Or6c75", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRNSTAVTDFILLGLTDDPLWQIVVFTFLLVTYMLSVTGNLIIIILTLSDAHLMTPMYFFLRNFSLLEISFTSVCIPRFLVTIVTGDRTISYNGCVAQLFFFIFLGVTEFYLLAAMSYDRYVAICKPLHYTTIMSNRVCILLVFSSWFAGFMIIFPPIILLLQLDFCASNIIDHFICDSSPILQLSCSNTHFLELMAFSLAVVTLMVTLTLIILSYTNIIRTILRIPSTNQRKKAFSTCSSHMIVVSLSYGSCIFMYIKPSARERVTLSKGVAVLNTSVAPLLNPFIYTLRNQQVKQAFKNMIQRIFFSSKNLP", "length": 314 }, "evidence": [ { "id": "F1SQ96", "url": "https://omabrowser.org/oma/group/F1SQ96/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SQ96", "url": "https://www.uniprot.org/uniprotkb/F1SQ96" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SQ96", "url": "https://www.uniprot.org/uniprotkb/F1SQ96" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQ96", "url": "https://www.uniprot.org/uniprotkb/F1SQ96" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQ96-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQ96-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQ96" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQ96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQ96" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 276, "end_pos": 278 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 40, "end_pos": 42 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQC9-1", "uniprot_ac": "F1SQC9", "uniprot_id": "F1SQC9_PIG", "mass": { "chemical_mass": 38821.0, "monoisotopic_mass": 38821.0 }, "refseq": { "ac": "XP_005663928", "name": "olfactory receptor 6C75-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663928" }, "gene_names": [ { "name": "LOC100736710", "type": "recommended", "evidence": [ { "id": "F1SQC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQC9" } ] }, { "name": "LOC100736710", "type": "synonym", "evidence": [ { "id": "XP_005663928", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663928" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SQC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQC9/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 6C75-like", "type": "synonym", "evidence": [ { "id": "XP_005663928", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663928" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SQC9", "url": "https://www.uniprot.org/uniprotkb/F1SQC9#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQC9", "url": "https://www.uniprot.org/uniprotkb/F1SQC9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100736710", "url": "https://www.uniprot.org/uniprotkb/F1SQC9", "locus": {} } ], "crossref": [ { "id": "F1SQC9", "url": "https://alphafold.ebi.ac.uk/entry/F1SQC9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000333", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000333", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100736710", "url": "https://www.ncbi.nlm.nih.gov/gene/100736710", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736710", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736710", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQC9", "url": "https://www.orthodb.org/?gene=F1SQC9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF79", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF79", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005663928", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005663928", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQC9", "url": "https://www.uniprot.org/uniprotkb/F1SQC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SQC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIMKKKATKKYLQEYCGVLELKQRRKIMRNYTEVTEFILLGLTDDPQWQAVLFTLLLVTYMLSVTGNLTIIALTLSDPHLQTPMYFFLRNFAFLEISFTSVCIPRFLVTLVTGDRTISYDGCVAQLFFLIFLGVTEFYLLAAMSYDRYVAICKPLHYTIIMSSRVCALLVFSSWLAGFLIIFPPIILLLLQLEFCASNIIDHFICDASPILQLSCSSTRLLELMAFFLAVVTLMVTLTLVILSYTYIVRTILRLPSTSQRKKAFSTCSSHMRVVSLSYGSCIFMYIKPSARERVTLSKGVAVLNTSVAPLLNPFIYTLRNQQVKQAFRNMVQRRAFSSNQ", "length": 340, "header": "tr|F1SQC9-1|F1SQC9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100736710 PE=3 SV=2 CANONICAL=F1SQC9-1" }, "isoforms": [ { "isoform_ac": "F1SQC9-1", "url": "https://www.uniprot.org/uniprotkb/F1SQC9/entry#F1SQC9-1", "sequence": { "sequence": "MIMKKKATKKYLQEYCGVLELKQRRKIMRNYTEVTEFILLGLTDDPQWQAVLFTLLLVTYMLSVTGNLTIIALTLSDPHLQTPMYFFLRNFAFLEISFTSVCIPRFLVTLVTGDRTISYDGCVAQLFFLIFLGVTEFYLLAAMSYDRYVAICKPLHYTIIMSSRVCALLVFSSWLAGFLIIFPPIILLLLQLEFCASNIIDHFICDASPILQLSCSSTRLLELMAFFLAVVTLMVTLTLVILSYTYIVRTILRLPSTSQRKKAFSTCSSHMRVVSLSYGSCIFMYIKPSARERVTLSKGVAVLNTSVAPLLNPFIYTLRNQQVKQAFRNMVQRRAFSSNQ", "length": 340, "header": "tr|F1SQC9-1|F1SQC9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100736710 PE=3 SV=2 CANONICAL=F1SQC9-1" }, "locus": { "chromosome": "5", "start_pos": 20650705, "end_pos": 20649348, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000355.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000355.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000349.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000349.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQC9", "url": "https://www.uniprot.org/uniprotkb/F1SQC9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736710", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736710", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SQC9", "url": "https://www.uniprot.org/uniprotkb/F1SQC9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SQC9", "url": "https://www.uniprot.org/uniprotkb/F1SQC9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQC9", "url": "https://www.uniprot.org/uniprotkb/F1SQC9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQC9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 340, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQC9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQC9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQC9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 316, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 304, "end_pos": 306 }, { "start_pos": 30, "end_pos": 32 }, { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQD0-1", "uniprot_ac": "F1SQD0", "uniprot_id": "F1SQD0_PIG", "mass": { "chemical_mass": 35626.0, "monoisotopic_mass": 35626.0 }, "refseq": { "ac": "XP_003481652", "name": "olfactory receptor 6C1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481652" }, "gene_names": [ { "name": "LOC110255239", "type": "recommended", "evidence": [ { "id": "F1SQD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD0" } ] }, { "name": "LOC110255239", "type": "synonym", "evidence": [ { "id": "XP_003481652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481652" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SQD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD0/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 6C1-like", "type": "synonym", "evidence": [ { "id": "XP_003481652", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481652" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SQD0", "url": "https://www.uniprot.org/uniprotkb/F1SQD0#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQD0", "url": "https://www.uniprot.org/uniprotkb/F1SQD0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110255239", "url": "https://www.uniprot.org/uniprotkb/F1SQD0", "locus": {} } ], "crossref": [ { "id": "F1SQD0", "url": "https://alphafold.ebi.ac.uk/entry/F1SQD0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000332", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000332", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110255239", "url": "https://www.ncbi.nlm.nih.gov/gene/110255239", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110255239", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255239", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ITCIPRF", "url": "https://omabrowser.org/oma/group/ITCIPRF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQD0", "url": "https://www.orthodb.org/?gene=F1SQD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481652", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481652", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQD0", "url": "https://www.uniprot.org/uniprotkb/F1SQD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SQD0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNYTVVTEFILLGLSDDPQLQVVVFVFLLITYLLSITGNLTIITLTLLDPHLQTPMYFFLRNFSLLEVSFTTVTIPKFLSTIISGDKTISFNDCMAQLFFFILLGVTEFYLLAAMSYDRYVAICKPLHYLAIMNPRLCILLVFASWLASFLIIFPLLMLFIQLDYCKSNAVDHFTCDYFPLLQLSCSDTTFLEMVGFSCAVFTLMFTLALIFLSYIYIIRTIVRIPSTSQRTKAFSTCSSHMIVISISYGSCIFMYINPSAKDRVSLSKGVAVLNTSVAPMLNPFIYSLRNQQVKRGFMDLARKVEFFSRK", "length": 312, "header": "tr|F1SQD0-1|F1SQD0_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110255239 PE=3 SV=2 CANONICAL=F1SQD0-1" }, "isoforms": [ { "isoform_ac": "F1SQD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SQD0/entry#F1SQD0-1", "sequence": { "sequence": "MRNYTVVTEFILLGLSDDPQLQVVVFVFLLITYLLSITGNLTIITLTLLDPHLQTPMYFFLRNFSLLEVSFTTVTIPKFLSTIISGDKTISFNDCMAQLFFFILLGVTEFYLLAAMSYDRYVAICKPLHYLAIMNPRLCILLVFASWLASFLIIFPLLMLFIQLDYCKSNAVDHFTCDYFPLLQLSCSDTTFLEMVGFSCAVFTLMFTLALIFLSYIYIIRTIVRIPSTSQRTKAFSTCSSHMIVISISYGSCIFMYINPSAKDRVSLSKGVAVLNTSVAPMLNPFIYSLRNQQVKRGFMDLARKVEFFSRK", "length": 312, "header": "tr|F1SQD0-1|F1SQD0_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110255239 PE=3 SV=2 CANONICAL=F1SQD0-1" }, "locus": { "chromosome": "5", "start_pos": 20617677, "end_pos": 20616742, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000354.2", "url": "https://www.ensembl.org/id/ENSSSCT00000000354.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000348.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000348.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQD0", "url": "https://www.uniprot.org/uniprotkb/F1SQD0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110255239", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110255239", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3MXW1-1", "protein_name": "Olfactory receptor", "gene_name": "OR6C1Q", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRNYTEIREFILLGLSDDPQVQVVIFVFLLITYMLSITGNLTIIILTLLDAHLQTPMYFFLRSFSILEVSFTTVTIPKFLTTIITGDKTIPFNDCMAQLFFFILLGVTEFYLLAAMSYDRYIAICKPLHYMTIMNRKVCALLVLASWLASFLIIFPSLMLFIQLDYCKSNAIDHFTCDYFPLLHLSCSNTKLLEMMGFSSAVFTLMFTLTLIILSYTYIIRTILRIPSTTQRTKAFSTCSSHMIVISISYGSCIFMYMNPSAKDRVSLSKGVAVLNTSVAPMLNPFIYTLRNLQVKQAFMDMARKILLFSRK", "length": 312 }, "evidence": [ { "id": "F1SQD0", "url": "https://omabrowser.org/oma/group/F1SQD0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SQD0", "url": "https://www.uniprot.org/uniprotkb/F1SQD0" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SQD0", "url": "https://www.uniprot.org/uniprotkb/F1SQD0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQD0", "url": "https://www.uniprot.org/uniprotkb/F1SQD0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQD0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 312, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQD0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQD0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD0" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 276, "end_pos": 278 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQD5-1", "uniprot_ac": "F1SQD5", "uniprot_id": "F1SQD5_PIG", "mass": { "chemical_mass": 35544.0, "monoisotopic_mass": 35544.0 }, "refseq": { "ac": "XP_020947427", "name": "olfactory receptor 6C1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947427" }, "gene_names": [ { "name": "LOC110260678", "type": "recommended", "evidence": [ { "id": "F1SQD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD5" } ] }, { "name": "LOC110260678", "type": "synonym", "evidence": [ { "id": "XP_020947427", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947427" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SQD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD5/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 6C1-like", "type": "synonym", "evidence": [ { "id": "XP_020947427", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947427" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SQD5", "url": "https://www.uniprot.org/uniprotkb/F1SQD5#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQD5", "url": "https://www.uniprot.org/uniprotkb/F1SQD5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC110260678", "url": "https://www.uniprot.org/uniprotkb/F1SQD5", "locus": {} } ], "crossref": [ { "id": "F1SQD5", "url": "https://alphafold.ebi.ac.uk/entry/F1SQD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000327", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000327", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110260678", "url": "https://www.ncbi.nlm.nih.gov/gene/110260678", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110260678", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260678", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ISCSDIW", "url": "https://omabrowser.org/oma/group/ISCSDIW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQD5", "url": "https://www.orthodb.org/?gene=F1SQD5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020947427", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020947427", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQD5", "url": "https://www.uniprot.org/uniprotkb/F1SQD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQD5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQD5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNYTVVTEFILLGLSDDPQLQVVVFVFLLITYLLSITGNLTIITLTLLDPHLQTPMYFFLRNFSLLEVSFTTVTIPRFLSTIITGDKTISFNNCMAQLFFFILLGVTEFCLLAAMSYDRYVAICKPLHYLAIMNPRLCILLIFASWLASFLIIFPSLMLFLNLDYCKSNVDHFTCDYFPLLQLSCSDTKFLEMMGFSFAVFILLFTLALIILSYIYIIRTIVRIPSTSQRTKAFPTCSSHMIVISISYGSCMFVYINPSAKDRVSLSKGVAVLNTSVAPMLNPFIYSLRNQQVKRAFMDMARKVAFFSRK", "length": 311, "header": "tr|F1SQD5-1|F1SQD5_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110260678 PE=3 SV=1 CANONICAL=F1SQD5-1" }, "isoforms": [ { "isoform_ac": "F1SQD5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQD5/entry#F1SQD5-1", "sequence": { "sequence": "MRNYTVVTEFILLGLSDDPQLQVVVFVFLLITYLLSITGNLTIITLTLLDPHLQTPMYFFLRNFSLLEVSFTTVTIPRFLSTIITGDKTISFNNCMAQLFFFILLGVTEFCLLAAMSYDRYVAICKPLHYLAIMNPRLCILLIFASWLASFLIIFPSLMLFLNLDYCKSNVDHFTCDYFPLLQLSCSDTKFLEMMGFSFAVFILLFTLALIILSYIYIIRTIVRIPSTSQRTKAFPTCSSHMIVISISYGSCMFVYINPSAKDRVSLSKGVAVLNTSVAPMLNPFIYSLRNQQVKRAFMDMARKVAFFSRK", "length": 311, "header": "tr|F1SQD5-1|F1SQD5_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC110260678 PE=3 SV=1 CANONICAL=F1SQD5-1" }, "locus": { "chromosome": "5", "start_pos": 20535572, "end_pos": 20534640, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000349.2", "url": "https://www.ensembl.org/id/ENSSSCT00000000349.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000343.1", "url": "https://www.ensembl.org/id/ENSSSCP00000000343.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQD5", "url": "https://www.uniprot.org/uniprotkb/F1SQD5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260678", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260678", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SQD5", "url": "https://www.uniprot.org/uniprotkb/F1SQD5" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SQD5", "url": "https://www.uniprot.org/uniprotkb/F1SQD5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQD5", "url": "https://www.uniprot.org/uniprotkb/F1SQD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 275, "end_pos": 277, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQD5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQD5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQD5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQD5" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 287, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 275, "end_pos": 277 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQE8-1", "uniprot_ac": "F1SQE8", "uniprot_id": "F1SQE8_PIG", "mass": { "chemical_mass": 35118.0, "monoisotopic_mass": 35118.0 }, "refseq": { "ac": "XP_013843743", "name": "olfactory receptor 6C76", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843743" }, "gene_names": [ { "name": "LOC106507488", "type": "recommended", "evidence": [ { "id": "F1SQE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQE8" } ] }, { "name": "LOC106507488", "type": "synonym", "evidence": [ { "id": "XP_013843743", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843743" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SQE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQE8/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 6C76", "type": "synonym", "evidence": [ { "id": "XP_013843743", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843743" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SQE8", "url": "https://www.uniprot.org/uniprotkb/F1SQE8#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQE8", "url": "https://www.uniprot.org/uniprotkb/F1SQE8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC106507488", "url": "https://www.uniprot.org/uniprotkb/F1SQE8", "locus": {} } ], "crossref": [ { "id": "F1SQE8", "url": "https://alphafold.ebi.ac.uk/entry/F1SQE8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106507488", "url": "https://www.ncbi.nlm.nih.gov/gene/106507488", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106507488", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106507488", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MSDRICY", "url": "https://omabrowser.org/oma/group/MSDRICY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQE8", "url": "https://www.orthodb.org/?gene=F1SQE8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013843743", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013843743", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQE8", "url": "https://www.uniprot.org/uniprotkb/F1SQE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNRTSVTEFILLGLTDNPELQAVIFFFLLLTYVLSVTGNLTIIVLTLLHSHLKTPMYFFLRNFSFLEISFTSVCNPRFLVSILTGDKSISYNACAAQLFFFILLGSTEFFLLASMSYDRYVAICKPLHYPTIMSHKVCYQLVGSSWLAGFLVIFPPLTMGLQLDFCDTNVIDHFTCDSAPLLHISCTDTSTLELMSFALAVLTLMSTLTLVILSYCYILRTMLRIPSAQQRKKAFSTCSSHMIVVSISYGSCIFMYVKTSAKEGVALTKGVAVLNTSVAPMLNPFIYTLRNQQVKQAFKDLTRKILSSKTLT", "length": 313, "header": "tr|F1SQE8-1|F1SQE8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC106507488 PE=3 SV=3 CANONICAL=F1SQE8-1" }, "isoforms": [ { "isoform_ac": "F1SQE8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQE8/entry#F1SQE8-1", "sequence": { "sequence": "MRNRTSVTEFILLGLTDNPELQAVIFFFLLLTYVLSVTGNLTIIVLTLLHSHLKTPMYFFLRNFSFLEISFTSVCNPRFLVSILTGDKSISYNACAAQLFFFILLGSTEFFLLASMSYDRYVAICKPLHYPTIMSHKVCYQLVGSSWLAGFLVIFPPLTMGLQLDFCDTNVIDHFTCDSAPLLHISCTDTSTLELMSFALAVLTLMSTLTLVILSYCYILRTMLRIPSAQQRKKAFSTCSSHMIVVSISYGSCIFMYVKTSAKEGVALTKGVAVLNTSVAPMLNPFIYTLRNQQVKQAFKDLTRKILSSKTLT", "length": 313, "header": "tr|F1SQE8-1|F1SQE8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC106507488 PE=3 SV=3 CANONICAL=F1SQE8-1" }, "locus": { "chromosome": "5", "start_pos": 20373554, "end_pos": 20372616, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000344.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000344.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000338.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000338.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQE8", "url": "https://www.uniprot.org/uniprotkb/F1SQE8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106507488", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106507488", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZP76-1", "protein_name": "Olfactory receptor", "gene_name": "Or6c76b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNRTSVTYFILLGLTDDPELQVVIFFFLFLTYMLSITGNLTIITLTLLDSHLKTPMYFFLRNFSFLEISFTSVCNPRFLVSILTKDKSISYNACVAQLFFFIFLGSTEFFLLASMSYDRYVAICKPLHYTTIISNKICHQLIISSWLAGFLVIFPPLAMGLELDFCDSNIIDHFTCDSAPLLQISCTDTSTLELMSFILALITLMTTLMLIILSYTCILRTILKFPSAKQREKAFATCSSHMIVVSISYGSCIFMYVKTSAKAGVALTKGVAMLNTSVAPMLNPFIYTLRNQQVKQAFKDLVRRKLASKC", "length": 311 }, "evidence": [ { "id": "F1SQE8", "url": "https://omabrowser.org/oma/group/F1SQE8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6NM76-1", "protein_name": "Olfactory receptor 6C76", "gene_name": "OR6C76", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKNRTSVTDFILLGLTDNPQLQVVIFSFLFLTYVLSVTGNLTIISLTLLDSHLKTPMYFFLRNFSLEISFTSVCNPRFLISILTGDKSISYNACAAQLFFFIFLGSTEFFLLASMSYDCYVAICKPLHYTTIMSDRICYQLIISSWLAGFLVIFPPLAMGLQLDFCDSNVIDHFTCDSAPLLQISCTDTSTLELMSFILALFTLISTLILVILSYTYIIRTILRIPSAQQRKKAFSTCSSHVIVVSISYGSCIFMYVKTSAKEGVALTKGVAILNTSVAPMLNPFIYTLRNQQVKQAFKDVLRKISHKKKKH", "length": 312 }, "evidence": [ { "id": "F1SQE8", "url": "https://omabrowser.org/oma/group/F1SQE8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VEX8-1", "protein_name": "Olfactory receptor", "gene_name": "Or6c76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLILSVRFLVDKPSEMRNRTSVTYFILLGLTDDPELQVVIFFFLFLTYLLSITGNLTIITLTLLDSHLKTPMYFFLRNFSFLEISFTSVCNPRFLVSILTKDKSISYNACAAQLFFFIFLGSTEFFLLASMSYDRYVAICKPLHYTTIISNKICHQLIISSWLAGFLVVFPPLAMGLDLDFCDSNTIDHFTCDSAPLLQISCTDTSTLELMSFILALITLMTTLMLIILSYTCILRTILKFPSAKQREKAFSTCSSHMIVVSISYGSCIFMYVKTSAKAGVALTKGVAMLNTSVAPMLNPFIYTLRNQQVKQAFKDLVRKKLASKLLI", "length": 328 }, "evidence": [ { "id": "F1SQE8", "url": "https://omabrowser.org/oma/group/F1SQE8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SQE8", "url": "https://www.uniprot.org/uniprotkb/F1SQE8" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SQE8", "url": "https://www.uniprot.org/uniprotkb/F1SQE8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQE8", "url": "https://www.uniprot.org/uniprotkb/F1SQE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQE8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQE8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQE8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQE8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 276, "end_pos": 278 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQF3-1", "uniprot_ac": "F1SQF3", "uniprot_id": "F1SQF3_PIG", "mass": { "chemical_mass": 35092.0, "monoisotopic_mass": 35092.0 }, "refseq": { "ac": "XP_020937338", "name": "olfactory receptor 6C4-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937338" }, "gene_names": [ { "name": "LOC100156762", "type": "recommended", "evidence": [ { "id": "F1SQF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQF3" } ] }, { "name": "LOC100156762", "type": "synonym", "evidence": [ { "id": "XP_020937338", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937338" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SQF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQF3/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 6C4-like", "type": "synonym", "evidence": [ { "id": "XP_020937338", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937338" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SQF3", "url": "https://www.uniprot.org/uniprotkb/F1SQF3#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQF3", "url": "https://www.uniprot.org/uniprotkb/F1SQF3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100156762", "url": "https://www.uniprot.org/uniprotkb/F1SQF3", "locus": {} } ], "crossref": [ { "id": "F1SQF3", "url": "https://alphafold.ebi.ac.uk/entry/F1SQF3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000318", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000318", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156762", "url": "https://www.ncbi.nlm.nih.gov/gene/100156762", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156762", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156762", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MSNRICI", "url": "https://omabrowser.org/oma/group/MSNRICI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQF3", "url": "https://www.orthodb.org/?gene=F1SQF3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020937338", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020937338", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQF3", "url": "https://www.uniprot.org/uniprotkb/F1SQF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQF3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNQTTFTEFILLGLTNQPEVQVVIFIFLFLTYLLSVLGNLTIIILTLVDPHLQTPMYFFLRNFSFLEVCFTSIFIPRFLTSLTTGNKVISFAGCLIQYFFAIFLGATEFYLLASMSYDRYVAICKPLHYLTIMNSRVCIQLVFSSWLGGFLAIFPPIFLMSQVDFCASNVLNHYYCDYGPLLELACSDTSLLELTVIFLAVVTLVVTLVLVTLSYTFIIRTILRIPSAQQRTKAFSTCSSHMIVISRSYGSCMFMYINPSAKEEGSFNKAIAVLITSITPLLNPFIYTLRNQQVKQAFKDTIKKIVKL", "length": 309, "header": "tr|F1SQF3-1|F1SQF3_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100156762 PE=3 SV=1 CANONICAL=F1SQF3-1" }, "isoforms": [ { "isoform_ac": "F1SQF3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQF3/entry#F1SQF3-1", "sequence": { "sequence": "MKNQTTFTEFILLGLTNQPEVQVVIFIFLFLTYLLSVLGNLTIIILTLVDPHLQTPMYFFLRNFSFLEVCFTSIFIPRFLTSLTTGNKVISFAGCLIQYFFAIFLGATEFYLLASMSYDRYVAICKPLHYLTIMNSRVCIQLVFSSWLGGFLAIFPPIFLMSQVDFCASNVLNHYYCDYGPLLELACSDTSLLELTVIFLAVVTLVVTLVLVTLSYTFIIRTILRIPSAQQRTKAFSTCSSHMIVISRSYGSCMFMYINPSAKEEGSFNKAIAVLITSITPLLNPFIYTLRNQQVKQAFKDTIKKIVKL", "length": 309, "header": "tr|F1SQF3-1|F1SQF3_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100156762 PE=3 SV=1 CANONICAL=F1SQF3-1" }, "locus": { "chromosome": "AEMK02000577.1", "start_pos": 165488, "end_pos": 164562, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000339.3", "url": "https://www.ensembl.org/id/ENSSSCT00000000339.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000333.1", "url": "https://www.ensembl.org/id/ENSSSCP00000000333.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQF3", "url": "https://www.uniprot.org/uniprotkb/F1SQF3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156762", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156762", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1N2X9-1", "protein_name": "Olfactory receptor", "gene_name": "OR6C4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKNRTFTEFILLGLTNQPEVQALIFIFLFLTYMLSVLGNLTIIILTLVDSHLQTPMYFFLRNFSFLEVSFTSIFIPRFLTSMTTGNKAISFVGCLIQYFFAIFLGATEFYLLASMSYDRYVAICKPLHYLTVMNSRVCIQLVFCSWLGGFLAIFPPIILMSQVDFCASNVLNHYYCDYGPLLELACSDTSLLELMVISLAVLTLVVTLVLVTLSYTYIIRTILRIPSAQQRAKAFSTCSSHMIVISLSYGSCMFMYINPSAKEEGAFNKGIAVLITSITPLLNPFIYTLRNQQVKQAFKDTIKKIVKL", "length": 308 }, "evidence": [ { "id": "F1SQF3", "url": "https://omabrowser.org/oma/group/F1SQF3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SQF3", "url": "https://www.uniprot.org/uniprotkb/F1SQF3" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SQF3", "url": "https://www.uniprot.org/uniprotkb/F1SQF3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQF3", "url": "https://www.uniprot.org/uniprotkb/F1SQF3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQF3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 309, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQF3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQF3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQF3" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 3, "end_pos": 5 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQH8-1", "uniprot_ac": "F1SQH8", "uniprot_id": "F1SQH8_PIG", "mass": { "chemical_mass": 46902.0, "monoisotopic_mass": 46902.0 }, "refseq": { "ac": "XP_005674663", "name": "potassium channel subfamily K member 12", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005674663" }, "gene_names": [ { "name": "KCNK12", "type": "recommended", "evidence": [ { "id": "F1SQH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ] }, { "name": "KCNK12", "type": "synonym", "evidence": [ { "id": "XP_005674663", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005674663" } ] } ], "protein_names": [ { "name": "Potassium two pore domain channel subfamily K member 12", "type": "synonym", "evidence": [ { "id": "F1SQH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQH8/entry#names_and_taxonomy" } ] }, { "name": "potassium channel subfamily K member 12", "type": "synonym", "evidence": [ { "id": "XP_005674663", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005674663" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KCNK12", "url": "https://www.uniprot.org/uniprotkb/F1SQH8", "locus": { "chromosome": "3", "start_pos": 93041533, "end_pos": 92990021, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000062991", "url": "https://www.ensembl.org/id/ENSSSCG00000062991" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008427", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008427", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521189", "url": "https://www.ncbi.nlm.nih.gov/gene/100521189", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521189", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521189", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MRACHER", "url": "https://omabrowser.org/oma/group/MRACHER/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQH8", "url": "https://www.orthodb.org/?gene=F1SQH8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11003:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11003:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5576886", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576886", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005674663", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005674663", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29463", "url": "https://www.rhea-db.org/rhea/29463", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQH8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQH8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSRSPRPPPRRCRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSALESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAFYFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACREHQLRRSGLLPATFRRGSALSEADCLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEGWDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISILIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAEGRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMNNRLAETSASR", "length": 430, "header": "tr|F1SQH8-1|F1SQH8_PIG Isoform 1 of Potassium two pore domain channel subfamily K member 12 OS=Sus scrofa OX=9823 GN=KCNK12 PE=3 SV=2 CANONICAL=F1SQH8-1" }, "isoforms": [ { "isoform_ac": "F1SQH8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQH8/entry#F1SQH8-1", "sequence": { "sequence": "MSSRSPRPPPRRCRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSALESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAFYFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACREHQLRRSGLLPATFRRGSALSEADCLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEGWDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISILIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAEGRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMNNRLAETSASR", "length": 430, "header": "tr|F1SQH8-1|F1SQH8_PIG Isoform 1 of Potassium two pore domain channel subfamily K member 12 OS=Sus scrofa OX=9823 GN=KCNK12 PE=3 SV=2 CANONICAL=F1SQH8-1" }, "locus": { "chromosome": "3", "start_pos": 93040529, "end_pos": 92990220, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000092055.1", "url": "https://www.ensembl.org/id/ENSSSCT00000092055.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076630.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076630.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 336, "start_aa": "Thr", "end_pos": 336, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr336", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521189", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521189", "resource": "KEGG Pathway" }, { "id": "R-SSC-5576886", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5576886", "resource": "Reactome", "description": "Phase 4 - resting membrane potential" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BIA3-1", "protein_name": "Potassium two pore domain channel subfamily K member 12", "gene_name": "KCNK12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSRSPRPPPRRCRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSALESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAFYFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACRERQLRRSGLLPATFRRGSALSEADCLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEGWDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISILIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAEGRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMNNRLAETSASR", "length": 430 }, "evidence": [ { "id": "F1SQH8", "url": "https://omabrowser.org/oma/group/F1SQH8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NV35-1", "protein_name": "Potassium two pore domain channel subfamily K member 12", "gene_name": "KCNK12", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMPRRGAAGPRRRRRPAPLNEDNGRFLLLAALIAAYLSAGATVFSALESPSEAAAQLRWNRTLHNFSRIFNISLPELRAFLRSYEAAMAAGIRVDALRPRWDFPGAFYFVGTVVSTIGFGMTTPATVAGKVFLIVYGLFGCAGTILFFNLFLERIISLLAFIMKACHERQLRRSGLLPPNFRRGSAMSGVGSLIGWKPSVYHVMLILGIFAITLSCCASAMYTLVEGWNYVDSLYYCFVTFSTIGFGDLVSSQNAVYQNQGLYRFGNFIFILMGVCCIYSLFNVISIVIKQLLNWVLKKFRCRCCPKCHKSSTRLGRRNAITPGARLRRHKISLEADGQYDSDTDGRRLSGEMISMRELTASNKVSLAILQKQLYETANGYPRNVCINTRQNGFSAGVGALAIMNNRLAETSDSR", "length": 415 }, "evidence": [ { "id": "F1SQH8", "url": "https://omabrowser.org/oma/group/F1SQH8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9HB15-1", "protein_name": "Potassium channel subfamily K member 12", "gene_name": "KCNK12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSRSPRPPPRRSRRRLPRPSCCCCCCRRSHLNEDTGRFVLLAALIGLYLVAGATVFSALESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYEAALAAGVRADALRPRWDFPGAFYFVGTVVSTIGFGMTTPATVGGKAFLIAYGLFGCAGTILFFNLFLERIISLLAFIMRACRERQLRRSGLLPATFRRGSALSEADSLAGWKPSVYHVLLILGLFAVLLSCCASAMYTSVEGWDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLGNFLFILLGVCCIYSLFNVISILIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGSRLRRRLAALGADPAARDSDAEGRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRSVCVNTRQNGFSGGVGALGIMNNRLAETSASR", "length": 430 }, "evidence": [ { "id": "F1SQH8", "url": "https://omabrowser.org/oma/group/F1SQH8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "outward rectifier potassium channel activity", "id": "GO:0015271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015271", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "pmid": "" }, { "name": "potassium ion leak channel activity", "id": "GO:0022841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022841", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "pmid": "" }, { "name": "monoatomic ion channel complex", "id": "GO:0034702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034702", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "F1SQH8", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29463", "name": "", "equation": "K(+)(in) = K(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29463", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29463" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQH8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQH8" }, { "id": "PF07885", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07885" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Potassium channel", "eco_id": "ECO_0000259", "start_pos": 111, "end_pos": 168, "start_aa": "Arg", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 336 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQJ4-1", "uniprot_ac": "F1SQJ4", "uniprot_id": "F1SQJ4_PIG", "mass": { "chemical_mass": 58734.0, "monoisotopic_mass": 58734.0 }, "refseq": { "ac": "NP_001191971", "name": "ankyrin repeat and SOCS box protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191971" }, "gene_names": [ { "name": "ASB3", "type": "recommended", "evidence": [ { "id": "F1SQJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4" } ] }, { "name": "ASB3", "type": "synonym", "evidence": [ { "id": "NP_001191971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191971" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and SOCS box protein 3", "type": "recommended", "evidence": [ { "id": "F1SQJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat and SOCS box protein 3", "type": "synonym", "evidence": [ { "id": "NP_001191971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191971" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQJ4", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASB3", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4", "locus": { "chromosome": "3", "start_pos": 87500977, "end_pos": 87389873, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008415", "url": "https://www.ensembl.org/id/ENSSSCG00000008415" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008415", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008415", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03722", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03722", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518009", "url": "https://www.ncbi.nlm.nih.gov/gene/100518009", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037329", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037329", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050776", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050776", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518009", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518009", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DCRSPMC", "url": "https://omabrowser.org/oma/group/DCRSPMC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQJ4", "url": "https://www.orthodb.org/?gene=F1SQJ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24173:SF74", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24173:SF74", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198:SF184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198:SF184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24201", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24201", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001191971", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191971", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0ABB5UNR6", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UNR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UNR6-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UNR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UNS5", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UNS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UNS5-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UNS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPY5", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UPY5-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UPY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQ71", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQ71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0ABB5UQ71-1", "url": "https://www.uniprot.org/uniprotkb/A0ABB5UQ71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQJ4", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQJ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFTEAYSDTCSTVGLAAREGNVKVLRKLLKRGRSVDVADNRGWMPIHEAAYHNSVECLQMLIHADSSENYIKTKTFEGFSALHLAASQGHWKIIQILLEAGADPNATTLEETTPLFLAVENGQIDVLRLLLRYGANVNGSHSMCGWNTLHQATFQENAEIIKLLLKKGANKECQDDFGITPLFVAAQYGKLESLSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHIKILDLLIPLTNRVCDTGPNKVSPVYSAVFGGQEECLEMLLQNGYSPDAQMCLVFGFSSPMCMAFQKDCEFLGIVNILLKYGAQLNELHLAYCLKYEKFSVFRYFLKKCCPLTPWSHISEFIHHAVKAQTKYKEWLPSLLLAGFDPLNLLCSSWIDSVSDDVLIFTLEFTNWRRLPPAVEKMLSARASNSSWALQQHIASVPSLTHLCRLEIRSSLKPEHLRCDNFIHQLPLPRSLHDYLLYAEVLRMNEIPELAVIQDEEISEAT", "length": 525, "header": "tr|F1SQJ4-1|F1SQJ4_PIG Isoform 1 of Ankyrin repeat and SOCS box protein 3 OS=Sus scrofa OX=9823 GN=ASB3 PE=3 SV=2 CANONICAL=F1SQJ4-1" }, "isoforms": [ { "isoform_ac": "A0ABB5UNR6-1", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4/entry#A0ABB5UNR6-1", "sequence": { "sequence": "MCGWNTLHQATFQENAEIIKLLLKKGANKECQDDFGITPLFVAAQYGKLESLSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHIKILDLLIPLTNRVCDTGPNKVSPVYSAVFGGQEECLEMLLQNGYSPDAQMCLVFGFSSPMCMAFQKDCEFLGIVNILLKYGAQLNELHLAYCLKYEKFSVFRYFLKKCCPLTPWSHISEFIHHAVKAQTKYKEWLPSLLLAGFDPLNLLCSSWIDSVSDDVLIFTLEFTNWRRLPPAVEKMLSARASNSSWALQQHIASVPSLTHLCRLEIRSSLKPEHLRCDNFIHQLPLPRSLHDYLLYAEVLRMNEIPELAVIQDEEISEAT", "length": 382, "header": "tr|A0ABB5UNR6-1|A0ABB5UNR6_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 3 OS=Sus scrofa OX=9823 GN=ASB3 PE=4 SV=1 CANONICAL=F1SQJ4-1" }, "locus": { "chromosome": "3", "start_pos": 87499598, "end_pos": 87445802, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107068.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107068.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081470.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081470.1" } ] } }, { "isoform_ac": "A0ABB5UNS5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4/entry#A0ABB5UNS5-1", "sequence": { "sequence": "MDFTEAYSDTCSTVGLAAREGNVKVLRKLLKRGRSVDVADNRGWMPIHEAAYHNSVECLQMLIHADSSENYIKTKTFEGFSALHLAASQGHWKIIQILLEAGADPNATTLEETTPLFLGPNPWHMEVPRLAV", "length": 132, "header": "tr|A0ABB5UNS5-1|A0ABB5UNS5_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 3 OS=Sus scrofa OX=9823 GN=ASB3 PE=4 SV=1 CANONICAL=F1SQJ4-1" }, "locus": { "chromosome": "3", "start_pos": 87426275, "end_pos": 87419752, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107067.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107067.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081469.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081469.1" } ] } }, { "isoform_ac": "A0ABB5UPY5-1", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4/entry#A0ABB5UPY5-1", "sequence": { "sequence": "MDFTEAYSDTCSTVGLAAREGNVKVLRKLLKRGRSVDVADNRGWMPIHEAAYHNSVECLQMLIHADSSENYIKTKTFEGFSALHLAASQGHWKIIQILLEAGADPNATTLEETTPLFLAVENGQIDVLRLLLRYGANVNGSHSMCGWNTLHQATFQENAEIIKLLLKKGANKECQDDFGITPLFVAAQYGKLESLSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHIKILDLLIPLTNRVCDTGPNKVSPVYSAVFGGQEECLEMLLQNGYSPDAQMCLVFGFSSPMCMAFQKDCEFLGIVNILLKYGAQLNELHLAYCLKYEKFSVFRYFLKKCCPLTPWSHISEFIHHAVKAQTKYKEWLPSLLLAGFDPLNLLCSSCLCSITDPPLSFGNSV", "length": 428, "header": "tr|A0ABB5UPY5-1|A0ABB5UPY5_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 3 OS=Sus scrofa OX=9823 GN=ASB3 PE=3 SV=1 CANONICAL=F1SQJ4-1" }, "locus": { "chromosome": "3", "start_pos": 87499441, "end_pos": 87419752, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107069.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107069.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081471.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081471.1" } ] } }, { "isoform_ac": "A0ABB5UQ71-1", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4/entry#A0ABB5UQ71-1", "sequence": { "sequence": "KYGAQLNELHLAYCLKYEKFSVFRYFLKKCCPLTPWSHISEFIHHAVKAQTKYKEWLPSLLLAGFDPLNLLCSSWIDSVSDDVLIFTLEFTNWRRLPPAVEKMLSARASNSSWALQQHIESSI", "length": 123, "header": "tr|A0ABB5UQ71-1|A0ABB5UQ71_PIG Computationally mapped isoform of Ankyrin repeat and SOCS box containing 3 OS=Sus scrofa OX=9823 GN=ASB3 PE=4 SV=1 CANONICAL=F1SQJ4-1" }, "locus": { "chromosome": "3", "start_pos": 87485500, "end_pos": 87473820, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107071.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107071.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081472.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081472.1" } ] } }, { "isoform_ac": "F1SQJ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4/entry#F1SQJ4-1", "sequence": { "sequence": "MDFTEAYSDTCSTVGLAAREGNVKVLRKLLKRGRSVDVADNRGWMPIHEAAYHNSVECLQMLIHADSSENYIKTKTFEGFSALHLAASQGHWKIIQILLEAGADPNATTLEETTPLFLAVENGQIDVLRLLLRYGANVNGSHSMCGWNTLHQATFQENAEIIKLLLKKGANKECQDDFGITPLFVAAQYGKLESLSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHIKILDLLIPLTNRVCDTGPNKVSPVYSAVFGGQEECLEMLLQNGYSPDAQMCLVFGFSSPMCMAFQKDCEFLGIVNILLKYGAQLNELHLAYCLKYEKFSVFRYFLKKCCPLTPWSHISEFIHHAVKAQTKYKEWLPSLLLAGFDPLNLLCSSWIDSVSDDVLIFTLEFTNWRRLPPAVEKMLSARASNSSWALQQHIASVPSLTHLCRLEIRSSLKPEHLRCDNFIHQLPLPRSLHDYLLYAEVLRMNEIPELAVIQDEEISEAT", "length": 525, "header": "tr|F1SQJ4-1|F1SQJ4_PIG Isoform 1 of Ankyrin repeat and SOCS box protein 3 OS=Sus scrofa OX=9823 GN=ASB3 PE=3 SV=2 CANONICAL=F1SQJ4-1" }, "locus": { "chromosome": "3", "start_pos": 87499598, "end_pos": 87419752, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009215.6", "url": "https://www.ensembl.org/id/ENSSSCT00000009215.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008981.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008981.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQJ4", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518009", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518009", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2KA67-1", "protein_name": "Ankyrin repeat and SOCS box-containing 3", "gene_name": "Asb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGGRGLHYPQFFRNLWRSCWSSTPPTFFPSETRKRRKGRTPVLKGTGMVTTVSTLIKKMDFTEAYSDTCSTVGLAAREGNVKILRKLLKKGRSVDVADNRGWMPIHEAAYHNAVECLQMLIHTDSSENYIKTKTFEGFCALHLAVSQGHWKVTQILLEAGADPNTTTLEETTPLFLAVESGQIDVLKLLLQHGANVNGSHSMCGWNSLHQASFQGNAEAIKLLLKQGADRECQDDFGITPLFVAAQYGKLESLSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSNGADPDLYCNEDNWQLPIHAAAQMGHRKTLDLLIPLTNRACDSGPDKVSPVYSAVFGGREECLETLLQNGYSPDAQMCLVFGFSSPLCMALQKDCEFSGVVNILLKYGAQLNELHLAYCLKYEKFSMFCCFLKKGCLVVPWNHTSEFVSYAVKAQTKYKAWLPHLLLAGFDPLILLCSSSWVDSVSDDILIFTLEFSNWKRLPPAVEKMLSVRANSSFALQQHMASVPSLTHLCRLEIRSSLKAEHLHSDIFIHQLPLPRSLQSYLLYEEVLRMNGILEPATNHDGEIREAT", "length": 583 }, "evidence": [ { "id": "F1SQJ4", "url": "https://omabrowser.org/oma/group/F1SQJ4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MN41-1", "protein_name": "Ankyrin repeat and SOCS box protein 3", "gene_name": "ASB3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDFTEAYADTCSTVGLAAREGNVKVLRKLLKKGRSIDVADNRGWMPIHEASYHNSVECLRMLIRADSSENYIKTKTFEGFCALHLAASQGHWKIIQILLEAGADPNATTLEETTPLFLAVENGQIDVLRLLLRYGANVNGSHSMCGWNALHQASFQGNAEIIKLLLKKGANKECQDDFGITPLFVAAQYGKLESLSILISSGADVNCQALDKATPLFIAAQEGHTECVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHTKILDLLIPLTNRVCDTGPNKVSPVYSAVLGGHEECLEMLLQSGYSPDAQMCLVFGFSSPLCMAFQKDCDFFGIVNILLKYGAQLNELHLAYCLKYERFSVFRYFLKKCCPSTPWDHISEFINHAIKAQTKYKEWLPSLLLAGFDPLNLLCSSWIDSVSDDILIFTLEFTNWRRLPPAVEKMLSARASNSSWALQQHIASVPSLTHLCRLEIWSCLKLEHLQSDGFIRQLPLPRSLHDYLLYAEVLRMNEVPELAVFQDGEISETT", "length": 525 }, "evidence": [ { "id": "F1SQJ4", "url": "https://omabrowser.org/oma/group/F1SQJ4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9WV72-1", "protein_name": "Ankyrin repeat and SOCS box protein 3", "gene_name": "Asb3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFTEAYSDTCSTVGLAAREGNVKILRKLLKKGRSVDVADNRGWMPIHEAAYHNAVECLQMLIHTDSSENYIKAKTFEGFCALHLAVSQGHWKITQILLEAGADPNETTLEETTPLFLAVESGRIDVLKLLLQHGANVNGSHSMSGWNSLHQASFQGNAETIRLLLKQGADRECQDDFGITPLFVAAQYGKLESMSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHTETLDLLIPRTNRACDTGPDKVSPVYSAVFGGREECLEMLLQNGYSPDAQMCLVFGFSSPLCMAFQKDCDFSGIVNILLKYGAQLNELHLAYCLKYEKFSMFCSFLKKGSLMVPWNHTSEFISYAVKAQTKYKAWLPHLLLAGFDPLILLCSSSWVDSASDDILIFTLEFSNWKRLPSAVEKMLSVRANSSWALQQHLASVPSLTHLCRLEIRASLKAEHLHSDIFIHQLPLPRSLQNYLLYEEVLRMNEILEPAANQDGETSKAT", "length": 525 }, "evidence": [ { "id": "F1SQJ4", "url": "https://omabrowser.org/oma/group/F1SQJ4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y575-1", "protein_name": "Ankyrin repeat and SOCS box protein 3", "gene_name": "ASB3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDFTEAYADTCSTVGLAAREGNVKVLRKLLKKGRSVDVADNRGWMPIHEAAYHNSVECLQMLINADSSENYIKMKTFEGFCALHLAASQGHWKIVQILLEAGADPNATTLEETTPLFLAVENGQIDVLRLLLQHGANVNGSHSMCGWNSLHQASFQENAEIIKLLLRKGANKECQDDFGITPLFVAAQYGKLESLSILISSGANVNCQALDKATPLFIAAQEGHTKCVELLLSSGADPDLYCNEDSWQLPIHAAAQMGHTKILDLLIPLTNRACDTGLNKVSPVYSAVFGGHEDCLEILLRNGYSPDAQACLVFGFSSPVCMAFQKDCEFFGIVNILLKYGAQINELHLAYCLKYEKFSIFRYFLRKGCSLGPWNHIYEFVNHAIKAQAKYKEWLPHLLVAGFDPLILLCNSWIDSVSIDTLIFTLEFTNWKTLAPAVERMLSARASNAWILQQHIATVPSLTHLCRLEIRSSLKSERLRSDSYISQLPLPRSLHNYLLYEDVLRMYEVPELAAIQDG", "length": 518 }, "evidence": [ { "id": "F1SQJ4", "url": "https://omabrowser.org/oma/group/F1SQJ4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SQJ4", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SQJ4", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 448, "end_pos": 450, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQJ4" }, { "id": "PS50225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOCS box", "eco_id": "ECO_0000259", "start_pos": 458, "end_pos": 505, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 139, "end_pos": 141 }, { "start_pos": 448, "end_pos": 450 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQM1-1", "uniprot_ac": "F1SQM1", "uniprot_id": "F1SQM1_PIG", "mass": { "chemical_mass": 50960.0, "monoisotopic_mass": 50960.0 }, "refseq": {}, "gene_names": [ { "name": "PUS10", "type": "recommended", "evidence": [ { "id": "F1SQM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ] } ], "protein_names": [ { "name": "tRNA pseudouridine(55) synthase", "type": "recommended", "evidence": [ { "id": "F1SQM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQM1/entry#names_and_taxonomy" } ] }, { "name": "5.4.99.25", "type": "synonym", "evidence": [ { "id": "F1SQM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQM1/entry#names_and_taxonomy" } ] }, { "name": "tRNA pseudouridine 55 synthase", "type": "synonym", "evidence": [ { "id": "F1SQM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQM1/entry#names_and_taxonomy" } ] }, { "name": "tRNA pseudouridylate synthase", "type": "synonym", "evidence": [ { "id": "F1SQM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQM1/entry#names_and_taxonomy" } ] }, { "name": "tRNA-uridine isomerase", "type": "synonym", "evidence": [ { "id": "F1SQM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQM1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PUS10", "url": "https://www.uniprot.org/uniprotkb/F1SQM1", "locus": { "chromosome": "3", "start_pos": 80858429, "end_pos": 80799208, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008385", "url": "https://www.ensembl.org/id/ENSSSCG00000008385" } ] } } ], "crossref": [ { "id": "F1SQM1", "url": "https://alphafold.ebi.ac.uk/entry/F1SQM1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008385", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008385", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR020103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048741", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048741", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21568", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21568", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21568:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21568:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21237", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21237", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21238", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21238", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQM1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNLGQNGEGKLSVIEDGSMASKNSNLNVCNVCLGILQDFCEKAFIKKVCQKVEASGFEFTNLVFSVSFPPQLSVREVRSFNIKQSLSLGRDDIVQLKEAYKWITHPLFSEELGVPIDGKSLFEVSVVFAHPETVEDCHFLRAICPECFKPAKNKQSVFTRMAVMKALNKIKEEDFRKQFPCPPNSPKAVCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLTVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRIHFTSQEIKELQQRINNSSNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQRKDIEFLDDIKDLKIDQKTPLRVLHRRPLAVRTRLIHSMETHYVDEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMDVTADILELDVEVNHFIVEIWVHYH", "length": 445, "header": "tr|F1SQM1-1|F1SQM1_PIG Isoform 1 of tRNA pseudouridine(55) synthase OS=Sus scrofa OX=9823 GN=PUS10 PE=3 SV=5 CANONICAL=F1SQM1-1" }, "isoforms": [ { "isoform_ac": "F1SQM1-1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1/entry#F1SQM1-1", "sequence": { "sequence": "MDNLGQNGEGKLSVIEDGSMASKNSNLNVCNVCLGILQDFCEKAFIKKVCQKVEASGFEFTNLVFSVSFPPQLSVREVRSFNIKQSLSLGRDDIVQLKEAYKWITHPLFSEELGVPIDGKSLFEVSVVFAHPETVEDCHFLRAICPECFKPAKNKQSVFTRMAVMKALNKIKEEDFRKQFPCPPNSPKAVCTVLEIECAHGAVFVAGRYNKYSRNLPQTPWIIDGERKLESSVEELISDHLLTVFKAESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRIHFTSQEIKELQQRINNSSNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQRKDIEFLDDIKDLKIDQKTPLRVLHRRPLAVRTRLIHSMETHYVDEHHFRLYLKTQAGTYIKEFVHGDFGRTKPNIGSLMDVTADILELDVEVNHFIVEIWVHYH", "length": 445, "header": "tr|F1SQM1-1|F1SQM1_PIG Isoform 1 of tRNA pseudouridine(55) synthase OS=Sus scrofa OX=9823 GN=PUS10 PE=3 SV=5 CANONICAL=F1SQM1-1" }, "locus": { "chromosome": "3", "start_pos": 80858426, "end_pos": 80799327, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009182.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009182.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008951.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008951.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "tRNA pseudouridine synthesis", "id": "GO:0031119", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031119", "evidence": [ { "database": "UniProtKB", "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ], "pmid": "" }, { "name": "primary miRNA processing", "id": "GO:0031053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031053", "evidence": [ { "database": "UniProtKB", "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "pseudouridine synthase activity", "id": "GO:0009982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009982", "evidence": [ { "database": "UniProtKB", "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ], "pmid": "" }, { "name": "primary miRNA binding", "id": "GO:0070878", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070878", "evidence": [ { "database": "UniProtKB", "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ], "pmid": "" }, { "name": "tRNA pseudouridine(55) synthase activity", "id": "GO:0160148", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160148", "evidence": [ { "database": "UniProtKB", "id": "F1SQM1", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 297, "end_pos": 299, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQM1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 445, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQM1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQM1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" }, { "id": "PF21237", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21237" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pus10 N-terminal eukaryotes", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 198, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQM1" }, { "id": "PF21238", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Pus10-like C-terminal", "eco_id": "ECO_0000259", "start_pos": 204, "end_pos": 432, "start_aa": "Phe", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 251, "end_pos": 253 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 297, "end_pos": 299 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQN3-1", "uniprot_ac": "F1SQN3", "uniprot_id": "F1SQN3_PIG", "mass": { "chemical_mass": 117711.0, "monoisotopic_mass": 117711.0 }, "refseq": { "ac": "XP_020935946", "name": "connector enhancer of kinase suppressor of ras 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935946" }, "gene_names": [ { "name": "CNKSR2", "type": "recommended", "evidence": [ { "id": "F1SQN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ] }, { "name": "CNKSR2", "type": "synonym", "evidence": [ { "id": "XP_020935946", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935946" } ] } ], "protein_names": [ { "name": "Connector enhancer of kinase suppressor of Ras 2", "type": "synonym", "evidence": [ { "id": "F1SQN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN3/entry#names_and_taxonomy" } ] }, { "name": "connector enhancer of kinase suppressor of ras 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020935946", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935946" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNKSR2", "url": "https://www.uniprot.org/uniprotkb/F1SQN3", "locus": { "chromosome": "X", "start_pos": 17838493, "end_pos": 17561260, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012164", "url": "https://www.ensembl.org/id/ENSSSCG00000012164" } ] } } ], "crossref": [ { "id": "F1SQN3", "url": "https://alphafold.ebi.ac.uk/entry/F1SQN3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012164", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012164", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01260", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01260", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06748", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06748", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09511", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09511", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523478", "url": "https://www.ncbi.nlm.nih.gov/gene/100523478", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049628", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049628", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051566", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051566", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12844", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12844", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12844:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12844:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06663", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06663", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10534", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10534", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5674135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020935946", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020935946", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALIMEPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYGLETENLKTLSHKLNASAKNLQNFITGRRRSGHYDGRTSRKLPNDFLTSVVDLIGAAKSLLAWLDRSPFAAVTDYSVTRNNVIQLCLELTTIVQQDCTVYETENKILHVCKTLSGVCDHIISLSSDPLVSQSAHLEVIQLANIKPSEGLGMYIKSTYDGLHVITGTTENSPADRCKKIHAGDEVIQVNHQTVVGWQLKNLVNALREDPSGVILTLKKRPQSMLTSAPALLKNMRWKPLALQPLIPRSPTSSVATPSSTISTPTKRDSSALQDLYIPPPPAEPYIPRDEKGNLPCEDLRGHMVGKPVHKGSESPNSFLDQEYRKRFNIVEEDTVLYCYEYEKGRSSSQGRRESTPTYGKLRPISMPVEYNWVGDYEDPNKMKRDSRRENSLLRYMSNEKIAQEEYMFQRNSKKDTGKKSKKKGDKSSSPTHYSLLPSLQMDALRQDIMGTPVPETTLYHTFQQSSLQHKSKKKNKGPIAGKSKRRISCKDLGRGDCEGWLWKKKDAKSYFSQKWKKYWFVLKDASLYWYINEEDEKAEGFISLPEFKIDRASECRKKYAFKACHPKIKSFYFAAEHLDDMNRWLNRINMLTAGYAERERIKQEQDYWSESDKEEADTPSTPKQDSPPPPYDTYPRPPSMSCASPYVEAKHSRLSSTETSQSQSSHEEFRQEVTGSIVVSPIRKTASQRRSWQDLIETPLTSSGLHYLQTLPLEDSVFSDSAAISPEHRRQSTLPTQKCHLQDHYGPYPLAESERMQVLNGNGGKPRSFTLPRDSGFNHCCLNAPVSACDPQDDVQPTEVEEEEEEEEEEEGEAAGENIGDKSESREEKLGDSLQDLYRALEQASLSPLGEHRISTKMEYKLSFIKRCNDPVMNEKLHRLRILKSTLKAREGEVAIIDKVLDNPDLTSKEFQQWKQMYLDLFLDICQNTTSNDPISISSEVDVITSSLTHTHSYIETHV", "length": 1035, "header": "tr|F1SQN3-1|F1SQN3_PIG Isoform 1 of Connector enhancer of kinase suppressor of Ras 2 OS=Sus scrofa OX=9823 GN=CNKSR2 PE=3 SV=4 CANONICAL=F1SQN3-1" }, "isoforms": [ { "isoform_ac": "F1SQN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SQN3/entry#F1SQN3-1", "sequence": { "sequence": "MALIMEPVSKWSPSQVVDWMKGLDDCLQQYIKNFEREKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALNYGLETENLKTLSHKLNASAKNLQNFITGRRRSGHYDGRTSRKLPNDFLTSVVDLIGAAKSLLAWLDRSPFAAVTDYSVTRNNVIQLCLELTTIVQQDCTVYETENKILHVCKTLSGVCDHIISLSSDPLVSQSAHLEVIQLANIKPSEGLGMYIKSTYDGLHVITGTTENSPADRCKKIHAGDEVIQVNHQTVVGWQLKNLVNALREDPSGVILTLKKRPQSMLTSAPALLKNMRWKPLALQPLIPRSPTSSVATPSSTISTPTKRDSSALQDLYIPPPPAEPYIPRDEKGNLPCEDLRGHMVGKPVHKGSESPNSFLDQEYRKRFNIVEEDTVLYCYEYEKGRSSSQGRRESTPTYGKLRPISMPVEYNWVGDYEDPNKMKRDSRRENSLLRYMSNEKIAQEEYMFQRNSKKDTGKKSKKKGDKSSSPTHYSLLPSLQMDALRQDIMGTPVPETTLYHTFQQSSLQHKSKKKNKGPIAGKSKRRISCKDLGRGDCEGWLWKKKDAKSYFSQKWKKYWFVLKDASLYWYINEEDEKAEGFISLPEFKIDRASECRKKYAFKACHPKIKSFYFAAEHLDDMNRWLNRINMLTAGYAERERIKQEQDYWSESDKEEADTPSTPKQDSPPPPYDTYPRPPSMSCASPYVEAKHSRLSSTETSQSQSSHEEFRQEVTGSIVVSPIRKTASQRRSWQDLIETPLTSSGLHYLQTLPLEDSVFSDSAAISPEHRRQSTLPTQKCHLQDHYGPYPLAESERMQVLNGNGGKPRSFTLPRDSGFNHCCLNAPVSACDPQDDVQPTEVEEEEEEEEEEEGEAAGENIGDKSESREEKLGDSLQDLYRALEQASLSPLGEHRISTKMEYKLSFIKRCNDPVMNEKLHRLRILKSTLKAREGEVAIIDKVLDNPDLTSKEFQQWKQMYLDLFLDICQNTTSNDPISISSEVDVITSSLTHTHSYIETHV", "length": 1035, "header": "tr|F1SQN3-1|F1SQN3_PIG Isoform 1 of Connector enhancer of kinase suppressor of Ras 2 OS=Sus scrofa OX=9823 GN=CNKSR2 PE=3 SV=4 CANONICAL=F1SQN3-1" }, "locus": { "chromosome": "X", "start_pos": 17835905, "end_pos": 17561671, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013305.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013305.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012949.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012949.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 332, "start_aa": "Thr", "end_pos": 332, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr332", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5674135", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "resource": "Reactome", "description": "MAP2K and MAPK activation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "pmid": "" }, { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "pmid": "" }, { "name": "enzyme-linked receptor protein signaling pathway", "id": "GO:0007167", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007167", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "pmid": "" }, { "name": "postsynaptic specialization organization", "id": "GO:0099084", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099084", "evidence": [ { "database": "UniProtKB", "id": "F1SQN3", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1004, "end_pos": 1006, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQN3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1035, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQN3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQN3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" }, { "id": "PS51290", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51290" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRIC", "eco_id": "ECO_0000259", "start_pos": 84, "end_pos": 178, "start_aa": "Asn", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 215, "end_pos": 297, "start_aa": "Val", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 570, "end_pos": 669, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQN3" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 11, "end_pos": 76, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 332 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1004, "end_pos": 1006 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQP7-1", "uniprot_ac": "F1SQP7", "uniprot_id": "F1SQP7_PIG", "mass": { "chemical_mass": 67217.0, "monoisotopic_mass": 67217.0 }, "refseq": { "ac": "XP_003126756", "name": "nuclear receptor subfamily 2 group C member 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126756" }, "gene_names": [ { "name": "NR2C1", "type": "recommended", "evidence": [ { "id": "F1SQP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ] }, { "name": "NR2C1", "type": "synonym", "evidence": [ { "id": "XP_003126756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126756" } ] } ], "protein_names": [ { "name": "Nuclear receptor subfamily 2 group C member 1", "type": "synonym", "evidence": [ { "id": "F1SQP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQP7/entry#names_and_taxonomy" } ] }, { "name": "nuclear receptor subfamily 2 group C member 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003126756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126756" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NR2C1", "url": "https://www.uniprot.org/uniprotkb/F1SQP7", "locus": { "chromosome": "5", "start_pos": 88277997, "end_pos": 88231274, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000902", "url": "https://www.ensembl.org/id/ENSSSCG00000000902" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000902", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000902", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06952", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06952", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06967", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06967", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516014", "url": "https://www.ncbi.nlm.nih.gov/gene/100516014", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001628", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001628", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048246", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048246", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516014", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516014", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NCGELCV", "url": "https://omabrowser.org/oma/group/NCGELCV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQP7", "url": "https://www.orthodb.org/?gene=F1SQP7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24083", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24083", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00104", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00104", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00105", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00105", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-383280", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126756", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126756", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHSTQGKPFLLTNPDGSTPSKVILARPDSTPGKVFLTSPDAAGVNQLFFTTPDLSSQHLQLLTDNSASEQGPNKGFDLCVVCGDRASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLAATPTFVTDSETARSAGLLDSGMFVNIHQSGIKTESAVLMTPDKAESCQGDLSTLASVVTSLANLGKTKDLSQNSTEMSMIESLNNGDTSLCEFHQEMQTNGDVSRAFDTLAKALNPGESTACQSSVEGMEGSVHLIAGDSSINYIEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKVLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPGLENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNVRIDSVIPHILKMEPADYNSQIIGHSI", "length": 605, "header": "tr|F1SQP7-1|F1SQP7_PIG Isoform 1 of Nuclear receptor subfamily 2 group C member 1 OS=Sus scrofa OX=9823 GN=NR2C1 PE=3 SV=2 CANONICAL=F1SQP7-1" }, "isoforms": [ { "isoform_ac": "F1SQP7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQP7/entry#F1SQP7-1", "sequence": { "sequence": "MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHSTQGKPFLLTNPDGSTPSKVILARPDSTPGKVFLTSPDAAGVNQLFFTTPDLSSQHLQLLTDNSASEQGPNKGFDLCVVCGDRASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLAATPTFVTDSETARSAGLLDSGMFVNIHQSGIKTESAVLMTPDKAESCQGDLSTLASVVTSLANLGKTKDLSQNSTEMSMIESLNNGDTSLCEFHQEMQTNGDVSRAFDTLAKALNPGESTACQSSVEGMEGSVHLIAGDSSINYIEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSTERRKVLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPGLENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNVRIDSVIPHILKMEPADYNSQIIGHSI", "length": 605, "header": "tr|F1SQP7-1|F1SQP7_PIG Isoform 1 of Nuclear receptor subfamily 2 group C member 1 OS=Sus scrofa OX=9823 GN=NR2C1 PE=3 SV=2 CANONICAL=F1SQP7-1" }, "locus": { "chromosome": "5", "start_pos": 88276288, "end_pos": 88243324, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000986.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000986.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000965.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000965.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 53, "start_aa": "Thr", "end_pos": 53, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr53", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 65, "start_aa": "Thr", "end_pos": 65, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr65", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516014", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516014", "resource": "KEGG Pathway" }, { "id": "R-SSC-383280", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "resource": "Reactome", "description": "Nuclear Receptor transcription pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YAJ4-1", "protein_name": "Nuclear receptor subfamily 2, group C, member 1", "gene_name": "NR2C1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAAGTTCKLQGITHSQGAVTQTLMDGAAQRIQIVPSDSGLSLPQRIQIVTDQQTGQKIQIVTALDQSSAGKQFILTNHDGSTPSKVILARQDSTPGKVILATPDAAGVNQLFFASPDISAQHIQILTDNSPNEQALNKVFDLCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGTKDCVINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLAATPTFVTDNETARSTGLLESGMFVNIQSGIKSEPTVLMTPDKVEACQGDLSTLANVVTSLANLSKSKDLSQSGTELSMIESLSNGDGSLPELQQEEQGSSDVTRAFDTLAKALNPGESAACQNSESAEANVQLGAGETSMNIVEIEGPLLSDAHVAFRLTMPSPMPEYLNVHYICETASRLLFLSMHWARSIPSFQALGQDNSISLVKACWNELFTLGLAQCSQVMNVATILAAFVNHLHDSLQQDKLPTDRGKLVMEHIFKLQEFCNSMVKLCLDGYEYAYLKAIVLFSPDHPGLENVVQIEKFQEKAYMEFQDYVTKAYPDDTYRLSRLLLRLPALRLMSAAITEELFFAGLIGNVQIDSIIPYILRMETADYNTQIIGHAV", "length": 633 }, "evidence": [ { "id": "F1SQP7", "url": "https://omabrowser.org/oma/group/F1SQP7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P13056-1", "protein_name": "Nuclear receptor subfamily 2 group C member 1", "gene_name": "NR2C1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATIEEIAHQIIEQQMGEIVTEQQTGQKIQIVTALDHNTQGKQFILTNHDGSTPSKVILARQDSTPGKVFLTTPDAAGVNQLFFTTPDLSAQHLQLLTDNSPDQGPNKVFDLCVVCGDKASGRHYGAVTCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLTATPTFVTDSESTRSTGLLDSGMFMNIHPSGVKTESAVLMTSDKAESCQGDLSTLANVVTSLANLGKTKDLSQNSNEMSMIESLSNDDTSLCEFQEMQTNGDVSRAFDTLAKALNPGESTACQSSVAGMEGSVHLITGDSSINYTEKEGPLLSDSHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSTERRKLLMEHIFKLQEFCNSMVKLCIDGYEYAYLKAIVLFSPDHPSLENMEQIEKFQEKAYVEFQDYITKTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNIRIDSVIPHILKMEPADYNSQIIGHSI", "length": 603 }, "evidence": [ { "id": "F1SQP7", "url": "https://omabrowser.org/oma/group/F1SQP7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q505F1-1", "protein_name": "Nuclear receptor subfamily 2 group C member 1", "gene_name": "Nr2c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATIEEIAHQIIDQQMGEIVTEQQTGQKIQIVTALDHSTQGKQFILANHEGSTPGKVFLTTPDAAGVNQLFFTSPDLSAPHLQLLTEKSPDQGPNKVFDLCVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKDCVINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLAATPTFVTDSETARSAGLLDSGMFVNIHPSGIKTEPAMLMAPDKAESCQGDLSTLASVVTSLANLGKAKDLSHCGGDMPVVQSLRNGDTSFGAFHHDIQTNGDVSRAFDTLAKALTPGESSACQSPEEGMEGSPHLIAGEPSFVEKEGPLLSESHVAFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHSSLQQDKMSPERRKSLMEHIFKLQEFCNSMVKLCIDGHEYAYLKAIVLFSPDHPGLENMELIERFQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNVRIDSVIPHILKMEPADYNSQIIGHSL", "length": 590 }, "evidence": [ { "id": "F1SQP7", "url": "https://omabrowser.org/oma/group/F1SQP7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VIJ4-1", "protein_name": "Nuclear receptor subfamily 2 group C member 1", "gene_name": "Nr2c1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATIEEIAHQIIDQQMGEIVTEQQTGQKIQIVTALDHSTQGKQFILANHEGSTPGKVFLTTPDAAGVNQLFFASPDLSTPHLQLLTENSPDQGPNKVFDLCVVCGDKASGRHYGAITCEGCKGFFKRSIRKNLVYSCRGSKDCIINKHHRNRCQYCRLQRCIAFGMKQDSVQCERKPIEVSREKSSNCAASTEKIYIRKDLRSPLAATPTFVTDSETARSTGLLDSGMFVNIHPSGIKTEPALLMTPDKAESCQGDLGTLASVVTSLANLGKAKDLSHCGGDLPVVQSLRNGDTSFGAFHQDIQTNGDVSRAFDNLAKALTPGENPACQSPGESMEGSTHLIAGEPSCMEREGPLLSDSHVVFRLTMPSPMPEYLNVHYIGESASRLLFLSMHWALSIPSFQALGQENSISLVKAYWNELFTLGLAQCWQVMNVATILATFVNCLHNSLQQDKMSPERRKLLMEHIFKLQEFCNSMVKLCIDGHEYAYLKAIVLFSPDHPGLENMELIEKFQEKAYVEFQDYITRTYPDDTYRLSRLLLRLPALRLMNATITEELFFKGLIGNVRIDSVIPHILKMEPADYNSQIIGHSL", "length": 590 }, "evidence": [ { "id": "F1SQP7", "url": "https://omabrowser.org/oma/group/F1SQP7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" }, { "name": "positive regulation of retinoic acid receptor signaling pathway", "id": "GO:0048386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048386", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" }, { "name": "histone deacetylase binding", "id": "GO:0042826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042826", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" }, { "name": "nuclear receptor activity", "id": "GO:0004879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004879", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "PML body", "id": "GO:0016605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016605", "evidence": [ { "database": "UniProtKB", "id": "F1SQP7", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 563, "end_pos": 565, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" }, { "id": "PS51843", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51843" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NR LBD", "eco_id": "ECO_0000259", "start_pos": 350, "end_pos": 592, "start_aa": "Gly", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQP7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQP7" }, { "id": "PS51030", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51030" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nuclear receptor", "eco_id": "ECO_0000259", "start_pos": 111, "end_pos": 186, "start_aa": "Phe", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 53, 65 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 292, "end_pos": 294 }, { "start_pos": 563, "end_pos": 565 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQV6-1", "uniprot_ac": "F1SQV6", "uniprot_id": "F1SQV6_PIG", "mass": { "chemical_mass": 39483.0, "monoisotopic_mass": 39483.0 }, "refseq": {}, "gene_names": [ { "name": "ZDHHC19", "type": "recommended", "evidence": [ { "id": "F1SQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ] } ], "protein_names": [ { "name": "Palmitoyltransferase", "type": "recommended", "evidence": [ { "id": "F1SQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQV6/entry#names_and_taxonomy" } ] }, { "name": "2.3.1.225", "type": "synonym", "evidence": [ { "id": "F1SQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQV6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZDHHC19", "url": "https://www.uniprot.org/uniprotkb/F1SQV6", "locus": { "chromosome": "13", "start_pos": 133885763, "end_pos": 133875309, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011847", "url": "https://www.ensembl.org/id/ENSSSCG00000011847" } ] } } ], "crossref": [ { "id": "F1SQV6", "url": "https://alphafold.ebi.ac.uk/entry/F1SQV6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011847", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011847", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22883", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22883", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22883:SF326", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22883:SF326", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01529", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01529", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "36683", "url": "https://www.rhea-db.org/rhea/36683", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SQV6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHWGFFLSTLGCASEAAVAWSSWNRQRGRSLLSLISPGCTGGPAMPLVKDAMPLVKEPHSPPQAPLPWLLPSLFAAFNVVLLITFSGLFFAFPCRWLAQKGEWAFPIVTGLLFVLTFFSLISLNFSDPGILHRGSNEQGPMVVHVVWVNHRAFRLQWCQKCCFHCPPRTHHCPSCNICVEDFDHHCKWVNNCIGHRNFRFFMLLVLSLCLYSGAILVTCLIFLVRTTHLPFSMDKAIAIVVAVPAAGFMVPLFLLLLIQAMSVSAAERSYEGKCRYLQGYNPFDYGCASNWYLTICAPLGPKYMAEAVWLQRVVGPDQVPTQNPHFPTSPSALKPPAPISGSLQTREGCPREW", "length": 354, "header": "tr|F1SQV6-1|F1SQV6_PIG Isoform 1 of Palmitoyltransferase OS=Sus scrofa OX=9823 GN=ZDHHC19 PE=3 SV=5 CANONICAL=F1SQV6-1" }, "isoforms": [ { "isoform_ac": "F1SQV6-1", "url": "https://www.uniprot.org/uniprotkb/F1SQV6/entry#F1SQV6-1", "sequence": { "sequence": "MSHWGFFLSTLGCASEAAVAWSSWNRQRGRSLLSLISPGCTGGPAMPLVKDAMPLVKEPHSPPQAPLPWLLPSLFAAFNVVLLITFSGLFFAFPCRWLAQKGEWAFPIVTGLLFVLTFFSLISLNFSDPGILHRGSNEQGPMVVHVVWVNHRAFRLQWCQKCCFHCPPRTHHCPSCNICVEDFDHHCKWVNNCIGHRNFRFFMLLVLSLCLYSGAILVTCLIFLVRTTHLPFSMDKAIAIVVAVPAAGFMVPLFLLLLIQAMSVSAAERSYEGKCRYLQGYNPFDYGCASNWYLTICAPLGPKYMAEAVWLQRVVGPDQVPTQNPHFPTSPSALKPPAPISGSLQTREGCPREW", "length": 354, "header": "tr|F1SQV6-1|F1SQV6_PIG Isoform 1 of Palmitoyltransferase OS=Sus scrofa OX=9823 GN=ZDHHC19 PE=3 SV=5 CANONICAL=F1SQV6-1" }, "locus": { "chromosome": "13", "start_pos": 133885760, "end_pos": 133875508, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012959.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012959.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012618.5", "url": "https://www.ensembl.org/id/ENSSSCP00000012618.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "pmid": "" }, { "name": "perinucleolar compartment", "id": "GO:0097356", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097356", "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein targeting to membrane", "id": "GO:0006612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006612", "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "pmid": "" }, { "name": "positive regulation of aggrephagy", "id": "GO:1905337", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905337", "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-cysteine S-palmitoyltransferase activity", "id": "GO:0019706", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019706", "evidence": [ { "database": "UniProtKB", "id": "F1SQV6", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "36683", "name": "", "equation": "L-cysteinyl-[protein] + hexadecanoyl-CoA = S-hexadecanoyl-L-cysteinyl-[protein] + CoA", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "36683", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/36683" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQV6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 354, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQV6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQV6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQV6" }, { "id": "PF01529", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01529" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Palmitoyltransferase DHHC", "eco_id": "ECO_0000259", "start_pos": 155, "end_pos": 270, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQV7-1", "uniprot_ac": "F1SQV7", "uniprot_id": "F1SQV7_PIG", "mass": { "chemical_mass": 37942.0, "monoisotopic_mass": 37942.0 }, "refseq": { "ac": "NP_001231195", "name": "organic solute transporter subunit alpha", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231195" }, "gene_names": [ { "name": "SLC51A", "type": "recommended", "evidence": [ { "id": "F1SQV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ] }, { "name": "SLC51A", "type": "synonym", "evidence": [ { "id": "NP_001231195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231195" } ] } ], "protein_names": [ { "name": "Solute carrier family 51 member A", "type": "synonym", "evidence": [ { "id": "F1SQV7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQV7/entry#names_and_taxonomy" } ] }, { "name": "organic solute transporter alpha", "type": "synonym", "evidence": [ { "id": "NP_001231195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231195" } ] }, { "name": "organic solute transporter subunit alpha", "type": "synonym", "evidence": [ { "id": "NP_001231195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231195" } ] }, { "name": "solute carrier family 51 alpha subunit", "type": "synonym", "evidence": [ { "id": "NP_001231195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231195" } ] }, { "name": "solute carrier family 51 subunit alpha", "type": "synonym", "evidence": [ { "id": "NP_001231195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231195" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC51A", "url": "https://www.uniprot.org/uniprotkb/F1SQV7", "locus": { "chromosome": "13", "start_pos": 133851776, "end_pos": 133869753, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011846", "url": "https://www.ensembl.org/id/ENSSSCG00000011846" } ] } } ], "crossref": [ { "id": "F1SQV7", "url": "https://alphafold.ebi.ac.uk/entry/F1SQV7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011846", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011846", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100512372", "url": "https://www.ncbi.nlm.nih.gov/gene/100512372", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005178", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005178", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512372", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512372", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IWISGAS", "url": "https://omabrowser.org/oma/group/IWISGAS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQV7", "url": "https://www.orthodb.org/?gene=F1SQV7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23423", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23423", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03619", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03619", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-159418", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159418", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231195", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231195", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQV7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQV7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPDRTQIKLDPRYTADLLKILEVNYSIPSVCFTYPPTAYQLLRALGPMEISLTGIMTLLTLGSVTIFLESAVYLYKNTRCPIKRKTLLWSSSAPTIVCVFCCFGLWIPRALMLVEMAVASFFAMCIYLLMKVMVQGFGGQEAVLRTLKDTPMRVHTGPCCCCCPCCPKLILTRKKLQLLMLGPFQYAFLKIALTLVGLFLIPDGIYIPADISEESAALWINTFLAVSTLLALWALGIIFRQAKLHLGEQNIGAKFALFQVLLILTALQPAIFSVLANGGQIACSPPFSSKIRSQVMNCHLLILETFLLTVLTRMYYRKKDDKVGYETFSSPDLDMNLKA", "length": 340, "header": "tr|F1SQV7-1|F1SQV7_PIG Isoform 1 of Solute carrier family 51 member A OS=Sus scrofa OX=9823 GN=SLC51A PE=4 SV=1 CANONICAL=F1SQV7-1" }, "isoforms": [ { "isoform_ac": "F1SQV7-1", "url": "https://www.uniprot.org/uniprotkb/F1SQV7/entry#F1SQV7-1", "sequence": { "sequence": "MDPDRTQIKLDPRYTADLLKILEVNYSIPSVCFTYPPTAYQLLRALGPMEISLTGIMTLLTLGSVTIFLESAVYLYKNTRCPIKRKTLLWSSSAPTIVCVFCCFGLWIPRALMLVEMAVASFFAMCIYLLMKVMVQGFGGQEAVLRTLKDTPMRVHTGPCCCCCPCCPKLILTRKKLQLLMLGPFQYAFLKIALTLVGLFLIPDGIYIPADISEESAALWINTFLAVSTLLALWALGIIFRQAKLHLGEQNIGAKFALFQVLLILTALQPAIFSVLANGGQIACSPPFSSKIRSQVMNCHLLILETFLLTVLTRMYYRKKDDKVGYETFSSPDLDMNLKA", "length": 340, "header": "tr|F1SQV7-1|F1SQV7_PIG Isoform 1 of Solute carrier family 51 member A OS=Sus scrofa OX=9823 GN=SLC51A PE=4 SV=1 CANONICAL=F1SQV7-1" }, "locus": { "chromosome": "13", "start_pos": 133869537, "end_pos": 133852022, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012958.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012958.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012617.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012617.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512372", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512372", "resource": "KEGG Pathway" }, { "id": "R-SSC-159418", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-159418", "resource": "Reactome", "description": "Recycling of bile acids and salts" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7HSR2-1", "protein_name": "Organic solute transporter subunit alpha", "gene_name": "Slc51a", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEPGRTQIKLDPRYTADLLELLKTNYSISSACFSYPPTAAQLLRELGPLDIALTIILTFFTVGSVAIFVEDAIYLYKNTLCPIKKRTLIWSSSAPTVVSALCCFGLWIPRALTLVEMTITAFYAVVFYLLMLVMVEGFGGKDSVLKTLQDTPMRVHTGPCCCCCPCCPPLMLTRRKLQLLMLGPFQYAFLKIMLTIVGLFLIPDGIFDPSDISEKSTALWINTFLGVSTLFALWSLAILFRQAKVHLGEQNMGSKFALFQVLVILTALQPSIFSVLASTGQIACSPPYSSKIRSQVMNCHMLILETFLMTVLTRMYYRRKDDKIGYQSCSAPDLDLKIKA", "length": 340 }, "evidence": [ { "id": "F1SQV7", "url": "https://omabrowser.org/oma/group/F1SQV7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0L452-1", "protein_name": "Solute carrier family 51 member A", "gene_name": "Slc51a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLLLLDHPGLLTRYTADLLELLETNYSISPACFSHPPTAAQLLRELGSVEIALTIILTFFTIGSVAIFLEDAIYLYKNTLCPIKKRTLIWSSSAPTVVSVFCCFGLWIPRALTLVEMAITSFYAVCFYLLMMVMVEGFGGKEAVLRTLKDTPMRVHTGPCCCCCPCCPPLILTRKKLQLLMLGPFQYAFFKIVMSIVGLFLIPDGIYDPAEISEKSAALWISNFLAVSTLLALWSLAILFRQAKLHLGEQNMGSKFALFQVLVILTALQPSIFSILANSGQIACSPPYSSKIRSQVMNCHMLILETFLLTVLTRMYYRKKDNKVGYEACLPPDLDSTLKA", "length": 340 }, "evidence": [ { "id": "F1SQV7", "url": "https://omabrowser.org/oma/group/F1SQV7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q86UW1-1", "protein_name": "Organic solute transporter subunit alpha", "gene_name": "SLC51A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPGRTQIKLDPRYTADLLEVLKTNYGIPSACFSQPPTAAQLLRALGPVELALTSILTLLALGSIAIFLEDAVYLYKNTLCPIKRRTLLWKSSAPTVVSVLCCFGLWIPRSLVLVEMTITSFYAVCFYLLMLVMVEGFGGKEAVLRTLRDTPMMVHTGPCCCCCPCCPRLLLTRKKLQLLMLGPFQYAFLKITLTLVGLFLVPDGIYDPADISEGSTALWINTFLGVSTLLALWTLGIISRQARLHLGEQNMGAKFALFQVLLILTALQPSIFSVLANGGQIACSPPYSSKTRSQVMNCHLLILETFLMTVLTRMYYRRKDHKVGYETFSSPDLDLNLKA", "length": 340 }, "evidence": [ { "id": "F1SQV7", "url": "https://omabrowser.org/oma/group/F1SQV7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R000-1", "protein_name": "Organic solute transporter subunit alpha", "gene_name": "Slc51a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPGRTHIKLDPRYTAELLELLETNYSISPACFSHPPTAAQLLRALGPVDIALTIILTFLTTGSVAIFLEDAVYLYKNTLCPIKKRTLIWSSSAPTVVSVFCCFGLWIPRALTLVEMAITSFYAVCFYLLMMVMVEGFGGKKAVLRTLKDTPMRVHTGPCCCCCPCCPPLILTRKKLQLLLLGPFQYAFFKITLSIVGLFLIPDGIYDPGEISEKSAALWINNLLAVSTLLALWSLAILFRQAKMHLGEQNMGSKFALFQVLVILTALQPAIFSILANSGQIACSPPYSSKIRSQVMNCHMLILETFLMTVLTRMYYRRKDDKVGYEACSLPDLDSALKA", "length": 340 }, "evidence": [ { "id": "F1SQV7", "url": "https://omabrowser.org/oma/group/F1SQV7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" }, { "name": "bile acid transmembrane transporter activity", "id": "GO:0015125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015125", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "bile acid and bile salt transport", "id": "GO:0015721", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015721", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" }, { "name": "bile acid secretion", "id": "GO:0032782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032782", "evidence": [ { "database": "UniProtKB", "id": "F1SQV7", "url": "https://www.uniprot.org/uniprotkb/F1SQV7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 25, "end_pos": 27, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQV7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 340, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQV7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQV7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 25, "end_pos": 27 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQX8-1", "uniprot_ac": "F1SQX8", "uniprot_id": "F1SQX8_PIG", "mass": { "chemical_mass": 38794.0, "monoisotopic_mass": 38794.0 }, "refseq": { "ac": "XP_020925747", "name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925747" }, "gene_names": [ { "name": "BDH1", "type": "recommended", "evidence": [ { "id": "F1SQX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX8" } ] }, { "name": "BDH1", "type": "synonym", "evidence": [ { "id": "XP_020925747", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925747" } ] } ], "protein_names": [ { "name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "type": "recommended", "evidence": [ { "id": "F1SQX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX8/entry#names_and_taxonomy" } ] }, { "name": "1.1.1.30", "type": "synonym", "evidence": [ { "id": "F1SQX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX8/entry#names_and_taxonomy" } ] }, { "name": "3-hydroxybutyrate dehydrogenase", "type": "synonym", "evidence": [ { "id": "F1SQX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQX8/entry#names_and_taxonomy" } ] }, { "name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_020925747", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925747" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQX8", "url": "https://www.uniprot.org/uniprotkb/F1SQX8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BDH1", "url": "https://www.uniprot.org/uniprotkb/F1SQX8", "locus": { "chromosome": "13", "start_pos": 132645937, "end_pos": 132605489, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024109", "url": "https://www.ensembl.org/id/ENSSSCG00000024109" } ] } } ], "crossref": [ { "id": "ENSSSCG00000024109", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024109", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09805", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09805", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100511473", "url": "https://www.ncbi.nlm.nih.gov/gene/100511473", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020904", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020904", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511473", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511473", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ITKMESY", "url": "https://omabrowser.org/oma/group/ITKMESY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SQX8", "url": "https://www.orthodb.org/?gene=F1SQX8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43313", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43313", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43313:SF25", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43313:SF25", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00106", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00106", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-77108", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77108", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-77111", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77111", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9837999", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020925747", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020925747", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "20521", "url": "https://www.rhea-db.org/rhea/20521", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQX8", "url": "https://www.uniprot.org/uniprotkb/F1SQX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQX8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQX8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATMLTARLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNVCKSEEVEKVVETIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIRRAKGRVVNISSIMGRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIATKMWEQVPEAVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHPMDYYWWVRMQIMTHLPGAISDRIYIH", "length": 346, "header": "tr|F1SQX8-1|F1SQX8_PIG Isoform 1 of D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=BDH1 PE=1 SV=3 CANONICAL=F1SQX8-1" }, "isoforms": [ { "isoform_ac": "F1SQX8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQX8/entry#F1SQX8-1", "sequence": { "sequence": "MATMLTARLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNVCKSEEVEKVVETIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIRRAKGRVVNISSIMGRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIATKMWEQVPEAVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHPMDYYWWVRMQIMTHLPGAISDRIYIH", "length": 346, "header": "tr|F1SQX8-1|F1SQX8_PIG Isoform 1 of D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Sus scrofa OX=9823 GN=BDH1 PE=1 SV=3 CANONICAL=F1SQX8-1" }, "locus": { "chromosome": "13", "start_pos": 132645591, "end_pos": 132615045, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012944.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012944.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012603.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012603.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQX8", "url": "https://www.uniprot.org/uniprotkb/F1SQX8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511473", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511473", "resource": "KEGG Pathway" }, { "id": "R-SSC-77108", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77108", "resource": "Reactome", "description": "Utilization of Ketone Bodies" }, { "id": "R-SSC-77111", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77111", "resource": "Reactome", "description": "Synthesis of Ketone Bodies" }, { "id": "R-SSC-9837999", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "resource": "Reactome", "description": "Mitochondrial protein degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YU17-1", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "BDH1A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLATKLSRPLLNLPVKTLTVKNPGNSFRPVQRFCFPVLSSCGSRSYASEVDQIGSRAVLITGCDSGFGFALAKHLHTKGFIIYAGCLQKNKGEGGSKDLDNMNSDRMRTVQLNVCDSKEVDRAVEHVNSSLEDPEKGLWGLVNNAGISTFGEVEFTSMDTYMEVAEVNLWGTVRTTKAFLPLIRRSKGRVVNISSMMGRMGSPARSPYCITKFGVEAFSDCLRYEMQPQGVMVSIVEPGNFIAATNLYSPERIKAIADKMWDELPEIVRKDYGRKYFDEQVSKMETYCNSGSTDTSPVIESVAHALTSTAPYTRYHPMDYYWWLRMQIMTHMPAAISDRLYVY", "length": 343 }, "evidence": [ { "id": "F1SQX8", "url": "https://omabrowser.org/oma/group/F1SQX8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3GSJ7-1", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "Bdh1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MMLAARLSRPLSQLPGKTLSVCSRENGARHTLFYPASFTASIQRTYASEANEASGKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVCNDEEIEKAVETVRSSLEDPEKGMWGLVNNAGISTFGEVEFTSMATYKEVAEVNLWGTVRTTKSFLPLLRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYSPERIQAIAKKMWDELPEVVRKDYGKKYFDEKIAKMETYCNSGSTDTSSVIDAVTHALTAATPYTRYHPMDYYWWLRMQIMTHFPGAISDMIYIH", "length": 343 }, "evidence": [ { "id": "F1SQX8", "url": "https://omabrowser.org/oma/group/F1SQX8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P29147-1", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "Bdh1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLAARLSRPLSQLPGKALSVCDRENGTRHTLLFYPASFSPDTRRTYTSQADAASGKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLLKDKGDAGVRELDSLKSDRLRTIQLNVCNSEEVEKAVETVRSGLKDPEKGMWGLVNNAGISTFGEVEFTSMETYKEVAEVNLWGTVRTTKSFLPLLRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYSPERIQAIAKKMWDELPEVVRKDYGKKYFDEKIAKMETYCNSGSTDTSSVINAVTHALTAATPYTRYHPMDYYWWLRMQVMTHFPGAISDKIYIH", "length": 343 }, "evidence": [ { "id": "F1SQX8", "url": "https://omabrowser.org/oma/group/F1SQX8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q02338-1", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "BDH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLATRLSRPLSRLPGKTLSACDRENGARRPLLLGSTSFIPIGRRTYASAAEPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSSGSTDTSPVIDAVTHALTATTPYTRYHPMDYYWWLRMQIMTHLPGAISDMIYIR", "length": 343 }, "evidence": [ { "id": "F1SQX8", "url": "https://omabrowser.org/oma/group/F1SQX8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80XN0-1", "protein_name": "D-beta-hydroxybutyrate dehydrogenase, mitochondrial", "gene_name": "Bdh1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLAARLSRPLSQLPGKALSVRDRENGTRHTLLFYPASFSPDTRRTYASQADAASGKAILITGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVCNSEEVEKAVETIRSGLKDPEKGMWGLVNNAGISTFGEVEFTSMETYKEVAEVNLWGTVRTTKSFLPLLRRAKGRVVNISSMLGRMANPARSPYCITKFGIEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYSPERIQAIAKKMWDDLPEVVRKDYGRKYFDEKIAKMETYCNSGSTDTSSVINAVTHALTAATPYTRYHPMDYYWWLRMQIMTHFPGAISDKIYIH", "length": 343 }, "evidence": [ { "id": "F1SQX8", "url": "https://omabrowser.org/oma/group/F1SQX8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SQX8", "url": "https://www.uniprot.org/uniprotkb/F1SQX8" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SQX8", "url": "https://www.uniprot.org/uniprotkb/F1SQX8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "steroid metabolic process", "id": "GO:0008202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008202", "evidence": [ { "database": "UniProtKB", "id": "F1SQX8", "url": "https://www.uniprot.org/uniprotkb/F1SQX8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "3-hydroxybutyrate dehydrogenase activity", "id": "GO:0003858", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003858", "evidence": [ { "database": "UniProtKB", "id": "F1SQX8", "url": "https://www.uniprot.org/uniprotkb/F1SQX8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20521", "name": "", "equation": "(R)-3-hydroxybutanoate + NAD(+) = acetoacetate + NADH + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20521", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20521" } ] }, { "id": "R-SSC-73912", "name": "acetoacetic acid + NADH + H+ <=> beta-hydroxybutyrate + NAD+", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-73912", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73912" } ] }, { "id": "R-SSC-73920", "name": "D-beta hydroxybutyrate+NAD+ <=> acetoacetate+NADH+H+", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [ "R-ALL-73911" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-73920", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73920" } ] }, { "id": "R-SSC-9838035", "name": "CLPXP binds mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838035", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838035" } ] }, { "id": "R-SSC-9838289", "name": "CLPXP degrades mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838289", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838289" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-73911", "participant_name": "bHBA [mitochondrial matrix]", "crossref": [ { "id": "17066", "database": "ChEBI", "url": "" }, { "id": "8143720", "database": "PubChem Substance", "url": "" }, { "id": "C01089", "database": "COMPOUND", "url": "" }, { "id": "ZINC000000895486", "database": "ZINC", "url": "" }, { "id": "HMDB0000011", "database": "HMDB Metabolite", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 195, "end_pos": 197 }, { "start_pos": 205, "end_pos": 207 }, { "start_pos": 22, "end_pos": 24 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SQZ8-1", "uniprot_ac": "F1SQZ8", "uniprot_id": "F1SQZ8_PIG", "mass": { "chemical_mass": 54599.0, "monoisotopic_mass": 54599.0 }, "refseq": {}, "gene_names": [ { "name": "PYROXD1", "type": "recommended", "evidence": [ { "id": "F1SQZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" } ] } ], "protein_names": [ { "name": "tRNA ligase complex-associated NAD(P)H dehydrogenase PYROXD1", "type": "recommended", "evidence": [ { "id": "F1SQZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8/entry#names_and_taxonomy" } ] }, { "name": "1.6.99.1", "type": "synonym", "evidence": [ { "id": "F1SQZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8/entry#names_and_taxonomy" } ] }, { "name": "Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "F1SQZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Flavoprotein whose role is to protect RTCB, the catalytic subunit of the tRNA ligase complex (tRNA-LC) involved in tRNA splicing and unfolded protein response, from oxidative inactivation. It directly binds and shields the catalytic center of RTCB, prior to guanylylation, when it is inactive and its active site is vulnerable to oxidation under aerobic conditions. The interaction of PYROXD1 with RTCB is allosterically regulated by NAD(P)H binding and reduction of its FAD cofactor, while reoxidation of PYROXD1 thanks to its NADPH dehydrogenase activity triggers the timed release of RTCB, enabling its subsequent activation. Thereby, this protective mechanism may also function as a molecular timer, regulating RTCB activation through controlled release.", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8#function" }, { "database": "UniProtKB", "id": "ARBA00094509", "url": "https://www.uniprot.org/uniprotkb/ARBA00094509#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PYROXD1", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8", "locus": { "chromosome": "5", "start_pos": 51993717, "end_pos": 52020809, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000583", "url": "https://www.ensembl.org/id/ENSSSCG00000000583" } ] } } ], "crossref": [ { "id": "F1SQZ8", "url": "https://alphafold.ebi.ac.uk/entry/F1SQZ8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000583", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000583", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR016156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050260", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050260", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43429", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43429", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43429:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43429:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07992", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07992", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18267", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18267", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "11260", "url": "https://www.rhea-db.org/rhea/11260", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "11264", "url": "https://www.rhea-db.org/rhea/11264", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "11356", "url": "https://www.rhea-db.org/rhea/11356", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "13149", "url": "https://www.rhea-db.org/rhea/13149", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SQZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVARSPPTAGKFVVVGGGIAGVTCAEQLAIDFPSEDILLITASPVIKAVTNFKQVSKVLEEFDVEEQPSTMLENRFPNIKVIESGVKQLKSEQRCILTEDGNQHVYKKLCLCAGAKPKLICEGNPYVLGIRDTDSAQEFQKQLTQAKRIMIIGNGGIALELVYEIEGCEVIWVIKDKAIGNTFFDAGAAEFLTSKLIDEKSEAKIAQKRTRYTTEGRKKEAQTKAHAGNIGSALGPDWHEGLDLKGTKEFSHKIHIETMCEVKNIYLQEEFRISEKKSLIFPKDHHNQSVTTDKEIWPVYVELTNEKIYGCDFIVSATGVTPNTEPFLCGNNFDVGDDGGLKVDDHMHTSLPDIYAAGDICTASWQPSPVWQQMRLWTQARQMGWYAAKCMAAASVGESIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLGPDHELLLRCTKGQEYIKAVLQNGRMMGAVLIGETDLEETFENLILNQMNLSAYGRFPG", "length": 491, "header": "tr|F1SQZ8-1|F1SQZ8_PIG Isoform 1 of tRNA ligase complex-associated NAD(P)H dehydrogenase PYROXD1 OS=Sus scrofa OX=9823 GN=PYROXD1 PE=3 SV=5 CANONICAL=F1SQZ8-1" }, "isoforms": [ { "isoform_ac": "F1SQZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8/entry#F1SQZ8-1", "sequence": { "sequence": "MEVARSPPTAGKFVVVGGGIAGVTCAEQLAIDFPSEDILLITASPVIKAVTNFKQVSKVLEEFDVEEQPSTMLENRFPNIKVIESGVKQLKSEQRCILTEDGNQHVYKKLCLCAGAKPKLICEGNPYVLGIRDTDSAQEFQKQLTQAKRIMIIGNGGIALELVYEIEGCEVIWVIKDKAIGNTFFDAGAAEFLTSKLIDEKSEAKIAQKRTRYTTEGRKKEAQTKAHAGNIGSALGPDWHEGLDLKGTKEFSHKIHIETMCEVKNIYLQEEFRISEKKSLIFPKDHHNQSVTTDKEIWPVYVELTNEKIYGCDFIVSATGVTPNTEPFLCGNNFDVGDDGGLKVDDHMHTSLPDIYAAGDICTASWQPSPVWQQMRLWTQARQMGWYAAKCMAAASVGESIDMDFSFELFAHVTKFFNYKVVLLGKYNAQGLGPDHELLLRCTKGQEYIKAVLQNGRMMGAVLIGETDLEETFENLILNQMNLSAYGRFPG", "length": 491, "header": "tr|F1SQZ8-1|F1SQZ8_PIG Isoform 1 of tRNA ligase complex-associated NAD(P)H dehydrogenase PYROXD1 OS=Sus scrofa OX=9823 GN=PYROXD1 PE=3 SV=5 CANONICAL=F1SQZ8-1" }, "locus": { "chromosome": "5", "start_pos": 52020707, "end_pos": 51995742, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000627.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000627.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000613.5", "url": "https://www.ensembl.org/id/ENSSSCP00000000613.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" } ], "pmid": "" }, { "name": "sarcomere", "id": "GO:0030017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030017", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cellular response to oxidative stress", "id": "GO:0034599", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034599", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" } ], "pmid": "" }, { "name": "tRNA exon ligation", "id": "GO:0000968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000968", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "NAD(P)H oxidase H2O2-forming activity", "id": "GO:0016174", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016174", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" } ], "pmid": "" }, { "name": "molecular sensor activity", "id": "GO:0140299", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140299", "evidence": [ { "database": "UniProtKB", "id": "F1SQZ8", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 288, "end_pos": 290, "annotation": "n_glycosylation_sequon" }, { "start_pos": 482, "end_pos": 484, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "11260", "name": "", "equation": "NADPH + O2 + H(+) = H2O2 + NADP(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11260", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11260" } ] }, { "id": "11264", "name": "", "equation": "NADH + O2 + H(+) = H2O2 + NAD(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11264", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11264" } ] }, { "id": "11356", "name": "", "equation": "A + NADH + H(+) = AH2 + NAD(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11356", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11356" } ] }, { "id": "13149", "name": "", "equation": "A + NADPH + H(+) = AH2 + NADP(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13149", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13149" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SQZ8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 491, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SQZ8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SQZ8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SQZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" }, { "id": "PF07992", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07992" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAD/NAD(P)-binding", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 218, "start_aa": "Lys", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SQZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SQZ8" }, { "id": "PF18267", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18267" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NADH-rubredoxin oxidoreductase C-terminal", "eco_id": "ECO_0000259", "start_pos": 415, "end_pos": 480, "start_aa": "Lys", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 288, "end_pos": 290 }, { "start_pos": 482, "end_pos": 484 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR30-1", "uniprot_ac": "F1SR30", "uniprot_id": "F1SR30_PIG", "mass": { "chemical_mass": 26992.0, "monoisotopic_mass": 26992.0 }, "refseq": { "ac": "XP_003132402", "name": "lipoma HMGIC fusion partner-like 4 protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132402" }, "gene_names": [ { "name": "LHFPL4", "type": "recommended", "evidence": [ { "id": "F1SR30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ] }, { "name": "LHFPL4", "type": "synonym", "evidence": [ { "id": "XP_003132402", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132402" } ] } ], "protein_names": [ { "name": "LHFPL tetraspan subfamily member 4 protein", "type": "recommended", "evidence": [ { "id": "F1SR30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR30/entry#names_and_taxonomy" } ] }, { "name": "Lipoma HMGIC fusion partner-like 4 protein", "type": "synonym", "evidence": [ { "id": "F1SR30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR30/entry#names_and_taxonomy" } ] }, { "name": "lipoma HMGIC fusion partner-like 4 protein", "type": "synonym", "evidence": [ { "id": "XP_003132402", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132402" } ] } ], "function": [ { "annotation": "Plays a role in the regulation of inhibitory synapse formation and function by being involved in maintening gamma-aminobutyric acid receptors (GABAARs) clustering and their associated scaffold proteins at inhibitory synaptic sites. Acts in concert with NLGN2 to recruit or stabilize GABAARs.", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30#function" }, { "database": "UniProtKB", "id": "ARBA00056545", "url": "https://www.uniprot.org/uniprotkb/ARBA00056545#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LHFPL4", "url": "https://www.uniprot.org/uniprotkb/F1SR30", "locus": { "chromosome": "13", "start_pos": 65869652, "end_pos": 65919781, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011543", "url": "https://www.ensembl.org/id/ENSSSCG00000011543" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011543", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011543", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157883", "url": "https://www.ncbi.nlm.nih.gov/gene/100157883", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157883", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157883", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RDMCGEH", "url": "https://omabrowser.org/oma/group/RDMCGEH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SR30", "url": "https://www.orthodb.org/?gene=F1SR30", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12489", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12489", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12489:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12489:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10242", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10242", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003132402", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003132402", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR30-1", "url": "https://www.uniprot.org/uniprotkb/F1SR30-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSGAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALILSFLAFVLGNRQTDLLQEELKQENKDFVGSTVSSVLRPGGDVSGWGVLPCPVAHSQGP", "length": 247, "header": "tr|F1SR30-1|F1SR30_PIG Isoform 1 of LHFPL tetraspan subfamily member 4 protein OS=Sus scrofa OX=9823 GN=LHFPL4 PE=3 SV=1 CANONICAL=F1SR30-1" }, "isoforms": [ { "isoform_ac": "F1SR30-1", "url": "https://www.uniprot.org/uniprotkb/F1SR30/entry#F1SR30-1", "sequence": { "sequence": "MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSGAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALILSFLAFVLGNRQTDLLQEELKQENKDFVGSTVSSVLRPGGDVSGWGVLPCPVAHSQGP", "length": 247, "header": "tr|F1SR30-1|F1SR30_PIG Isoform 1 of LHFPL tetraspan subfamily member 4 protein OS=Sus scrofa OX=9823 GN=LHFPL4 PE=3 SV=1 CANONICAL=F1SR30-1" }, "locus": { "chromosome": "13", "start_pos": 65919774, "end_pos": 65873074, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012633.3", "url": "https://www.ensembl.org/id/ENSSSCT00000012633.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012301.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012301.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157883", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157883", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3GX86-1", "protein_name": "LHFPL tetraspan subfamily member 4 protein", "gene_name": "Lhfpl4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALILSFLAFVLGNRQTDLLQEELKQENKDFVGTTVSSVLRPGGDVSGWGVLPCPVAHTQGP", "length": 247 }, "evidence": [ { "id": "F1SR30", "url": "https://omabrowser.org/oma/group/F1SR30/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q17R16-1", "protein_name": "LHFPL tetraspan subfamily member 4 protein", "gene_name": "LHFPL4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSGAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALILSFLAFVLGNRQTDLLQEELKQENKDFVGSTVSSVLRPGGDVSGWGVLPCPVAHTQGP", "length": 247 }, "evidence": [ { "id": "F1SR30", "url": "https://omabrowser.org/oma/group/F1SR30/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5U4E0-1", "protein_name": "LHFPL tetraspan subfamily member 4 protein", "gene_name": "Lhfpl4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALILSFLAFVLGNRQTDLLQEELKQENKDFVGTTVSSVLRPGGDVSGWGVLPCPVAHTQGP", "length": 247 }, "evidence": [ { "id": "F1SR30", "url": "https://omabrowser.org/oma/group/F1SR30/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7Z7J7-1", "protein_name": "LHFPL tetraspan subfamily member 4 protein", "gene_name": "LHFPL4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCNTATVYKICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGILNALILSFLAFVLGNRQTDLLQEELKPENKDFVGSTVSSVLRPGGDVSGWGVLPCPVAHSQGP", "length": 247 }, "evidence": [ { "id": "F1SR30", "url": "https://omabrowser.org/oma/group/F1SR30/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W068-1", "protein_name": "Tetraspan membrane protein in hair cell stereocilia, isoform B", "gene_name": "Tmhs", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGTKIEYVDTTHLYASKYIRNSKAIGVLWAIFTICYAIIGIVAFVTPEWIGDPDNDGAGRLGLWQQCQRDEIFDNCRRRWESIFEVPTFSFQLATFFMLGAIALALLTIFFLVCLLFMKSTRVFHLCGWMQIISAICMIVACAAFPFGWNSDDFRKICGPEANRFELGLCGIRWAYPLAIIGCIDGVVLATLAFILATRHVRLQPDPIYQNSLYKGEINNAYLTDAISLAGSRKSNPRITGLNLQPILLVAPPNEDSISQFSRYH", "length": 265 }, "evidence": [ { "id": "F1SR30", "url": "https://omabrowser.org/oma/group/F1SR30/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "gamma-aminobutyric acid receptor clustering", "id": "GO:0097112", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097112", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" }, { "name": "sensory perception of sound", "id": "GO:0007605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007605", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" }, { "name": "regulation of inhibitory synapse assembly", "id": "GO:1905702", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905702", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" }, { "name": "neurotransmitter receptor localization to postsynaptic specialization membrane", "id": "GO:0099645", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099645", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "GABA-ergic synapse", "id": "GO:0098982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098982", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" }, { "name": "postsynaptic membrane", "id": "GO:0045211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045211", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" }, { "name": "inhibitory synapse", "id": "GO:0060077", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060077", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" }, { "name": "postsynaptic specialization", "id": "GO:0099572", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099572", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GABA receptor binding", "id": "GO:0050811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050811", "evidence": [ { "database": "UniProtKB", "id": "F1SR30", "url": "https://www.uniprot.org/uniprotkb/F1SR30" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR31-1", "uniprot_ac": "F1SR31", "uniprot_id": "F1SR31_PIG", "mass": { "chemical_mass": 60124.0, "monoisotopic_mass": 60124.0 }, "refseq": {}, "gene_names": [ { "name": "THUMPD3", "type": "recommended", "evidence": [ { "id": "F1SR31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ] } ], "protein_names": [ { "name": "tRNA (guanine(6)-N(2))-methyltransferase THUMP3", "type": "recommended", "evidence": [ { "id": "F1SR31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR31/entry#names_and_taxonomy" } ] }, { "name": "2.1.1.256", "type": "synonym", "evidence": [ { "id": "F1SR31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR31/entry#names_and_taxonomy" } ] }, { "name": "THUMP domain-containing protein 3", "type": "synonym", "evidence": [ { "id": "F1SR31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR31/entry#names_and_taxonomy" } ] }, { "name": "tRNA(Trp) (guanine(7)-N(2))-methyltransferase THUMP3", "type": "synonym", "evidence": [ { "id": "F1SR31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR31/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Catalytic subunit of the THUMPD3-TRM112 methyltransferase complex, that specifically mediates the S-adenosyl-L-methionine-dependent N(2)-methylation of guanosine nucleotide at position 6 (m2G6) in tRNAs. This is one of the major tRNA (guanine-N(2))-methyltransferases. Also catalyzes the S-adenosyl-L-methionine-dependent N(2)-methylation of guanosine nucleotide at position 7 of tRNA(Trp).", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31#function" }, { "database": "UniProtKB", "id": "ARBA00059676", "url": "https://www.uniprot.org/uniprotkb/ARBA00059676#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "THUMPD3", "url": "https://www.uniprot.org/uniprotkb/F1SR31", "locus": { "chromosome": "13", "start_pos": 65747076, "end_pos": 65721475, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011542", "url": "https://www.ensembl.org/id/ENSSSCG00000011542" } ] } } ], "crossref": [ { "id": "F1SR31", "url": "https://alphafold.ebi.ac.uk/entry/F1SR31", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011542", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011542", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11715", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11715", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000241", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000241", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029063", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029063", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR14911", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14911", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14911:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14911:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01170", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01170", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02926", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02926", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "83419", "url": "https://www.rhea-db.org/rhea/83419", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR31-1", "url": "https://www.uniprot.org/uniprotkb/F1SR31-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLFVLDTVSCPRFRTRTDYIQDLGSTASMSDVQESTNPLLDVNLLENQSSTQVTESGPKSESEHLRVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRSVDNLFVVVQEFKDYQFKETKEEVLKDFEELAGKLPWSDPLKIWKINTRFKKRKTKRKKISQNTSKEKIDNGQGDKTDEKDVKKEITNNVLDSQILDYYENLAIKEEISTLVGDDLVSCKDETDESSKEETDPEVLKFRVTCNRAGEKHCFSSNEVARDFGGAVQEYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCAPQPTDIIIDPMCGTGAIPIEGATEWSNCYHIAGDNNPLAVNRAANNISSLLTKSQVKEGKLSWGLPIDTVQWDICKLPLRTGSVDIIVTDMPFGKRMGSKKRNWDLYPACLREMSRVCRPGTGRAVLLTQDKKCFTKALSAMGHVWRKVHTVWVNIGGLHAAVYLLKRTPQTFVHPSEQDGGRSPWCKE", "length": 534, "header": "tr|F1SR31-1|F1SR31_PIG Isoform 1 of tRNA (guanine(6)-N(2))-methyltransferase THUMP3 OS=Sus scrofa OX=9823 GN=THUMPD3 PE=3 SV=4 CANONICAL=F1SR31-1" }, "isoforms": [ { "isoform_ac": "F1SR31-1", "url": "https://www.uniprot.org/uniprotkb/F1SR31/entry#F1SR31-1", "sequence": { "sequence": "MLFVLDTVSCPRFRTRTDYIQDLGSTASMSDVQESTNPLLDVNLLENQSSTQVTESGPKSESEHLRVTIGATVPTGFEQTAADEVREKLGSSCKISKDRGKIYFDISVESLAQVHCLRSVDNLFVVVQEFKDYQFKETKEEVLKDFEELAGKLPWSDPLKIWKINTRFKKRKTKRKKISQNTSKEKIDNGQGDKTDEKDVKKEITNNVLDSQILDYYENLAIKEEISTLVGDDLVSCKDETDESSKEETDPEVLKFRVTCNRAGEKHCFSSNEVARDFGGAVQEYFKWKADMTNFDVEVLLNIHDNEVVVGIALTEESLHRRNITHFGPTTLRSTLAYGMLRLCAPQPTDIIIDPMCGTGAIPIEGATEWSNCYHIAGDNNPLAVNRAANNISSLLTKSQVKEGKLSWGLPIDTVQWDICKLPLRTGSVDIIVTDMPFGKRMGSKKRNWDLYPACLREMSRVCRPGTGRAVLLTQDKKCFTKALSAMGHVWRKVHTVWVNIGGLHAAVYLLKRTPQTFVHPSEQDGGRSPWCKE", "length": 534, "header": "tr|F1SR31-1|F1SR31_PIG Isoform 1 of tRNA (guanine(6)-N(2))-methyltransferase THUMP3 OS=Sus scrofa OX=9823 GN=THUMPD3 PE=3 SV=4 CANONICAL=F1SR31-1" }, "locus": { "chromosome": "13", "start_pos": 65747073, "end_pos": 65721884, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012632.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012632.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012300.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012300.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "tRNA (guanine) methyltransferase activity", "id": "GO:0016423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016423", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "pmid": "" }, { "name": "tRNA (guanine(6)-N2)-methyltransferase activity", "id": "GO:0160117", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160117", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "pmid": "" }, { "name": "tRNA (guanine(7)-N2)-methyltransferase activity", "id": "GO:0160118", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160118", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "pmid": "" }, { "name": "tRNA methyltransferase complex", "id": "GO:0043527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043527", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "tRNA methylation", "id": "GO:0030488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030488", "evidence": [ { "database": "UniProtKB", "id": "F1SR31", "url": "https://www.uniprot.org/uniprotkb/F1SR31" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" }, { "start_pos": 391, "end_pos": 393, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "83419", "name": "", "equation": "guanosine(7) in tRNA + S-adenosyl-L-methionine = N(2)-methylguanosine(7) in tRNA + S-adenosyl-L-homocysteine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "83419", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/83419" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SR31-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 534, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SR31-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SR31" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SR31", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR31" }, { "id": "PS51165", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51165" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "THUMP", "eco_id": "ECO_0000259", "start_pos": 214, "end_pos": 314, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 181, "end_pos": 183 }, { "start_pos": 323, "end_pos": 325 }, { "start_pos": 391, "end_pos": 393 }, { "start_pos": 47, "end_pos": 49 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR34-1", "uniprot_ac": "F1SR34", "uniprot_id": "F1SR34_PIG", "mass": { "chemical_mass": 35486.0, "monoisotopic_mass": 35486.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100737602", "type": "recommended", "evidence": [ { "id": "F1SR34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR34" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SR34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR34/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SR34", "url": "https://www.uniprot.org/uniprotkb/F1SR34#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR34", "url": "https://www.uniprot.org/uniprotkb/F1SR34" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100737602", "url": "https://www.uniprot.org/uniprotkb/F1SR34", "locus": {} } ], "crossref": [ { "id": "F1SR34", "url": "https://alphafold.ebi.ac.uk/entry/F1SR34", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15225", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15225", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SHIKIMF", "url": "https://omabrowser.org/oma/group/SHIKIMF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SR34", "url": "https://www.uniprot.org/uniprotkb/F1SR34", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR34-1", "url": "https://www.uniprot.org/uniprotkb/F1SR34-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SPQRSGSGPRMSGNQSLCTRFTLVAFSSLAELQPVLFVLVLAIYLFTVGGNLIIISLIRVTPALHTPMYFFLVNLSFLEMCYITSVVPQMLVHLLVETKTISVGGCAAQMYVFSILGLTECCLLAAMAYDRFIAICHPLHYTLLMGPPVCLKLAAASWTTGVVVEAAQITWIFTLPFCGTGEIQHFFCDIMPVVKLACVDTSRNETVMFVLAVLFIMSPCFLILCSYARILVTIVRIPSAAGRRKAFSTCSSHILVVSLFYGTALFTYLQPKTAHTPASDKATALMYTVVTPALNPVIYTLRNKEVKEAFQKLMHRSPLSQVA", "length": 323, "header": "tr|F1SR34-1|F1SR34_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100737602 PE=3 SV=3 CANONICAL=F1SR34-1" }, "isoforms": [ { "isoform_ac": "F1SR34-1", "url": "https://www.uniprot.org/uniprotkb/F1SR34/entry#F1SR34-1", "sequence": { "sequence": "SPQRSGSGPRMSGNQSLCTRFTLVAFSSLAELQPVLFVLVLAIYLFTVGGNLIIISLIRVTPALHTPMYFFLVNLSFLEMCYITSVVPQMLVHLLVETKTISVGGCAAQMYVFSILGLTECCLLAAMAYDRFIAICHPLHYTLLMGPPVCLKLAAASWTTGVVVEAAQITWIFTLPFCGTGEIQHFFCDIMPVVKLACVDTSRNETVMFVLAVLFIMSPCFLILCSYARILVTIVRIPSAAGRRKAFSTCSSHILVVSLFYGTALFTYLQPKTAHTPASDKATALMYTVVTPALNPVIYTLRNKEVKEAFQKLMHRSPLSQVA", "length": 323, "header": "tr|F1SR34-1|F1SR34_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100737602 PE=3 SV=3 CANONICAL=F1SR34-1" }, "locus": { "chromosome": "5", "start_pos": 20276476, "end_pos": 20275508, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000333.3", "url": "https://www.ensembl.org/id/ENSSSCT00000000333.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000327.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000327.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 291, "start_aa": "Thr", "end_pos": 291, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr291", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 61, "start_aa": "Thr", "end_pos": 61, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr61", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SR34", "url": "https://www.uniprot.org/uniprotkb/F1SR34" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3ZP24-1", "protein_name": "Olfactory receptor family 10 subfamily U member 3B", "gene_name": "Or10u3b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSNSGLRKNGSLSFCSEFTLVAFSSLAELQPVLILVFLVTYLFTVGGNLTIICVIWVTRSLHTPMYYFLANLSFLEMCYISSVVPQMLVHLLVQIKTISVRGCAVQMYVFTILGLTECCLLATMAYDRFVAFCHPLHYPLRMGPSVCLKLAGASWMTGILVESAQTTWIFTLPFCGAGTIQHFFCDIMPVVKLACVDTSQNEIVIFIISLIFIMSPCLFILCSYIHIILTILKMPSAAGRHKAFSTCSSHILFVSLFYGTALFTYLQPKCSHTPDTDKATALMYTVVTPALNPVIYTLRNKEVKEAFHKVTQRKLHRQID", "length": 320 }, "evidence": [ { "id": "F1SR34", "url": "https://omabrowser.org/oma/group/F1SR34/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9PVJ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or10u3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNSELMKNGSLSLCTEFTLVAFSSLAELQLVLFVVFLVLYLFTVGGNLTIICVIWTTPSLHTPMYFFLANLSFLEMCYISSVVPQMLVHLLVQLKTISVAGCAAQMYVFTILGLTECCLLATMAYDRFVAICYPLHYTLWMDPSVCLKLAGASWMTGILVESAQTTWIFTLPFCGAGTIQHFFCDIMPVVKLACVDTSQNEMVIFIISLIFIMSPCLFILCSYVRIILTILKMPSAAGRHKAFSTCSSHILVVSLFYGTALFTYLQPKSSHTPDTDKVTALMYTVVTPALNPVIYTLRNKEVKEAFQKVTQRKLHRQID", "length": 320 }, "evidence": [ { "id": "F1SR34", "url": "https://omabrowser.org/oma/group/F1SR34/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SR34", "url": "https://www.uniprot.org/uniprotkb/F1SR34" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SR34", "url": "https://www.uniprot.org/uniprotkb/F1SR34" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SR34", "url": "https://www.uniprot.org/uniprotkb/F1SR34" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SR34", "url": "https://www.uniprot.org/uniprotkb/F1SR34" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 14, "end_pos": 16, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SR34-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 323, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SR34-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SR34" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SR34", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR34" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 299, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 61, 291 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 14, "end_pos": 16 }, { "start_pos": 204, "end_pos": 206 }, { "start_pos": 74, "end_pos": 76 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR35-1", "uniprot_ac": "F1SR35", "uniprot_id": "F1SR35_PIG", "mass": { "chemical_mass": 35582.0, "monoisotopic_mass": 35582.0 }, "refseq": { "ac": "XP_003126269", "name": "olfactory receptor 12-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126269" }, "gene_names": [ { "name": "LOC100512836", "type": "recommended", "evidence": [ { "id": "F1SR35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR35" } ] }, { "name": "LOC100512836", "type": "synonym", "evidence": [ { "id": "XP_003126269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126269" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SR35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR35/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 12-like", "type": "synonym", "evidence": [ { "id": "XP_003126269", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126269" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SR35", "url": "https://www.uniprot.org/uniprotkb/F1SR35#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR35", "url": "https://www.uniprot.org/uniprotkb/F1SR35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100512836", "url": "https://www.uniprot.org/uniprotkb/F1SR35", "locus": {} } ], "crossref": [ { "id": "F1SR35", "url": "https://alphafold.ebi.ac.uk/entry/F1SR35", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15419", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15419", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512836", "url": "https://www.ncbi.nlm.nih.gov/gene/100512836", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100512836", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512836", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MIIVIKI", "url": "https://omabrowser.org/oma/group/MIIVIKI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SR35", "url": "https://www.orthodb.org/?gene=F1SR35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003126269", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126269", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SR35", "url": "https://www.uniprot.org/uniprotkb/F1SR35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR35-1", "url": "https://www.uniprot.org/uniprotkb/F1SR35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSELNRNYSEVTEFILLGFRTSPKIQILLFLLFLLIYVVIVVGNISMLAVIKIDSRLHTPMYFFLRNLSYLDLCYSTVIAPKTLATFLSKDKRISYNGCATQFFFFALFVGTEGFLLAVMAYDRFSAICSPFLYPVRMSQQACVRLVIGSYICGCVNSMVQTGFTFSLHFCGENRLDHFFCDVPALIKISCVDTFMNEIVLFILSALIIITTTVIILVSYACILSTILKIPSTHGRSKTFSTCTSHITVVSLFYGTVFFMYAQPGAISSPEKSKIIAVFYTLIIPMLNPLIYSLRNREVKNAVKRIVLRKVSSH", "length": 315, "header": "tr|F1SR35-1|F1SR35_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100512836 PE=3 SV=3 CANONICAL=F1SR35-1" }, "isoforms": [ { "isoform_ac": "F1SR35-1", "url": "https://www.uniprot.org/uniprotkb/F1SR35/entry#F1SR35-1", "sequence": { "sequence": "MKSELNRNYSEVTEFILLGFRTSPKIQILLFLLFLLIYVVIVVGNISMLAVIKIDSRLHTPMYFFLRNLSYLDLCYSTVIAPKTLATFLSKDKRISYNGCATQFFFFALFVGTEGFLLAVMAYDRFSAICSPFLYPVRMSQQACVRLVIGSYICGCVNSMVQTGFTFSLHFCGENRLDHFFCDVPALIKISCVDTFMNEIVLFILSALIIITTTVIILVSYACILSTILKIPSTHGRSKTFSTCTSHITVVSLFYGTVFFMYAQPGAISSPEKSKIIAVFYTLIIPMLNPLIYSLRNREVKNAVKRIVLRKVSSH", "length": 315, "header": "tr|F1SR35-1|F1SR35_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100512836 PE=3 SV=3 CANONICAL=F1SR35-1" }, "locus": { "chromosome": "5", "start_pos": 20248670, "end_pos": 20247726, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000332.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000332.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000326.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000326.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SR35", "url": "https://www.uniprot.org/uniprotkb/F1SR35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100512836", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100512836", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3Z961-1", "protein_name": "Olfactory receptor", "gene_name": "Or9r3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLQQSSNDTELTDFILLGFWTSSEARVPLFLLFLLIYLVIVLGNISMLTVIKIDSRLHTPMYFFLQNLSFLDLCYSTVIAPKTLATFLSKEKKISYNECATQFFFFALFVGTEGFLLAVMAYDRFSAICSPFLYPVHMSQPACIRLVAGSYICGCINSMVQTGFTFSLRFCGENRLDHFFCDVPALIKISCVDTFVNEIVLFILSALIIISTITIILVSYAYILSTVLKIPSSHGRSKTFSTCGSHIAVVSLFYGTVFFMYAQPGSISSPEKSKIVAVFYTLIIPMLNPLIYSLRNTEVKNALKKTLLRKILWH", "length": 315 }, "evidence": [ { "id": "F1SR35", "url": "https://omabrowser.org/oma/group/F1SR35/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8VFU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or9r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLEQSRNYTELTDFILLGFWTSPEAQVPLFLLFLFIYLVILLGNLSMLTVIKIDSRLHTPMYFFLQNLSFLDLCYSTVIAPKTLATIFSKEKKISYNECATQFFFFALFVGTEGFLLAVMAYDRFSAICSPFLYTVHMSQPACIRLVAGSYICGCINSMIQTGFTFSLRFCGENRLDHFFCDVPALIKISCVDTFVNEIVLFILSALIIISTITIILVSYAYILSTVLKIPSTHGRSKTFSTCGSHIAVVSLFYGTVFFMYAQPGSISSPEKSKIVAVFYTLIIPMLNPLIYSLRNTEVKSALKKTLLRKISWQ", "length": 315 }, "evidence": [ { "id": "F1SR35", "url": "https://omabrowser.org/oma/group/F1SR35/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SR35", "url": "https://www.uniprot.org/uniprotkb/F1SR35" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SR35", "url": "https://www.uniprot.org/uniprotkb/F1SR35" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SR35", "url": "https://www.uniprot.org/uniprotkb/F1SR35" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SR35", "url": "https://www.uniprot.org/uniprotkb/F1SR35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SR35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 315, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SR35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SR35" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SR35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR35" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 293, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 45, "end_pos": 47 }, { "start_pos": 68, "end_pos": 70 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR41-1", "uniprot_ac": "F1SR41", "uniprot_id": "F1SR41_PIG", "mass": { "chemical_mass": 35181.0, "monoisotopic_mass": 35181.0 }, "refseq": { "ac": "XP_013853053", "name": "olfactory receptor 12-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853053" }, "gene_names": [ { "name": "LOC106510297", "type": "recommended", "evidence": [ { "id": "F1SR41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR41" } ] }, { "name": "LOC106510297", "type": "synonym", "evidence": [ { "id": "XP_013853053", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853053" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SR41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR41/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 12-like", "type": "synonym", "evidence": [ { "id": "XP_013853053", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853053" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SR41", "url": "https://www.uniprot.org/uniprotkb/F1SR41#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR41", "url": "https://www.uniprot.org/uniprotkb/F1SR41" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC106510297", "url": "https://www.uniprot.org/uniprotkb/F1SR41", "locus": {} } ], "crossref": [ { "id": "F1SR41", "url": "https://alphafold.ebi.ac.uk/entry/F1SR41", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000050921", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000050921", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15419", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15419", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106510297", "url": "https://www.ncbi.nlm.nih.gov/gene/106510297", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106510297", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106510297", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YINEVVM", "url": "https://omabrowser.org/oma/group/YINEVVM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SR41", "url": "https://www.orthodb.org/?gene=F1SR41", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48018", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48018", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013853053", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013853053", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SR41", "url": "https://www.uniprot.org/uniprotkb/F1SR41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR41-1", "url": "https://www.uniprot.org/uniprotkb/F1SR41-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSEFNRNYSEVTEFILLGFRTPPKLQILLFLVFLLIYMVTVVGNTSMIIVIKMDSRLQTPMYFFLRNLSYLDLCYATVTAPKTLANLLSSEKKISYNGCAVQFFFFALFVTAEGFLLAVMAFDRFSAICSPLLYPTHMSQKVCVQLVTGCYICGCINSIIQTGFTFSLRFCVENRLDHFFCDVPALLKISCVETFVNEVVLFLLSALIIITTTTVILLSYVYILCTVLRLPSTHGRSKTFSTCGSHIAVVSLFYGTVFFMYGQPGAISSPEKNKVVAVLYTLLIPMLNPLIYSLRNRDVKEAVKRILHRK", "length": 311, "header": "tr|F1SR41-1|F1SR41_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC106510297 PE=3 SV=3 CANONICAL=F1SR41-1" }, "isoforms": [ { "isoform_ac": "F1SR41-1", "url": "https://www.uniprot.org/uniprotkb/F1SR41/entry#F1SR41-1", "sequence": { "sequence": "MKSEFNRNYSEVTEFILLGFRTPPKLQILLFLVFLLIYMVTVVGNTSMIIVIKMDSRLQTPMYFFLRNLSYLDLCYATVTAPKTLANLLSSEKKISYNGCAVQFFFFALFVTAEGFLLAVMAFDRFSAICSPLLYPTHMSQKVCVQLVTGCYICGCINSIIQTGFTFSLRFCVENRLDHFFCDVPALLKISCVETFVNEVVLFLLSALIIITTTTVILLSYVYILCTVLRLPSTHGRSKTFSTCGSHIAVVSLFYGTVFFMYGQPGAISSPEKNKVVAVLYTLLIPMLNPLIYSLRNRDVKEAVKRILHRK", "length": 311, "header": "tr|F1SR41-1|F1SR41_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC106510297 PE=3 SV=3 CANONICAL=F1SR41-1" }, "locus": { "chromosome": "5", "start_pos": 20199472, "end_pos": 20198540, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000326.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000326.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000320.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000320.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SR41", "url": "https://www.uniprot.org/uniprotkb/F1SR41" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106510297", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106510297", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4AA37-1", "protein_name": "Olfactory receptor", "gene_name": "Or9r3c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKSELKRNYTELTEFILLGFRASPKFQVFLFLVFLMIYMVTVVGNVSMITVIKMDSRLQTPMYFFLRNLSYLDLCYSTVIAPKTLANFLTSEKKISYNGCATQFFFFALFVTAECFLLAVMAFDRFSAICSPLLYHVHMSQKVCVQLVTGSYICGCINSMVQTGFTFSLRFCGENRVDHFFCDVTALIKISCVDTFVNEIVLFILSALIVISTIIIILVSYAYILSTVLKIPSSHGRSKTFSTCGSHIAAVSLFYGTVFFMYAQPGSISSPEKSKIVAVFYTLITSMLNPLIYSLRNRDVKDAVKKILGGKCSQ", "length": 314 }, "evidence": [ { "id": "F1SR41", "url": "https://omabrowser.org/oma/group/F1SR41/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SR41", "url": "https://www.uniprot.org/uniprotkb/F1SR41" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SR41", "url": "https://www.uniprot.org/uniprotkb/F1SR41" } ], "pmid": "" }, { "name": "odorant binding", "id": "GO:0005549", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005549", "evidence": [ { "database": "UniProtKB", "id": "F1SR41", "url": "https://www.uniprot.org/uniprotkb/F1SR41" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SR41", "url": "https://www.uniprot.org/uniprotkb/F1SR41" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SR41-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 311, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SR41-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SR41" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SR41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR41" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 293, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 45, "end_pos": 47 }, { "start_pos": 68, "end_pos": 70 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR64-1", "uniprot_ac": "F1SR64", "uniprot_id": "F1SR64_PIG", "mass": { "chemical_mass": 37478.0, "monoisotopic_mass": 37478.0 }, "refseq": { "ac": "NP_001230334", "name": "large ribosomal subunit protein mL44", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230334" }, "gene_names": [ { "name": "MRPL44", "type": "recommended", "evidence": [ { "id": "F1SR64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ] }, { "name": "MRPL44", "type": "synonym", "evidence": [ { "id": "NP_001230334", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230334" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein mL44", "type": "recommended", "evidence": [ { "id": "F1SR64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR64/entry#names_and_taxonomy" } ] }, { "name": "39S ribosomal protein L44, mitochondrial", "type": "synonym", "evidence": [ { "id": "NP_001230334", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230334" }, { "id": "F1SR64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR64/entry#names_and_taxonomy" } ] }, { "name": "large ribosomal subunit protein mL44", "type": "synonym", "evidence": [ { "id": "NP_001230334", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230334" } ] } ], "function": [ { "annotation": "Component of the 39S subunit of mitochondrial ribosome. May have a function in the assembly/stability of nascent mitochondrial polypeptides exiting the ribosome.", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64#function" }, { "database": "UniProtKB", "id": "ARBA00059807", "url": "https://www.uniprot.org/uniprotkb/ARBA00059807#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRPL44", "url": "https://www.uniprot.org/uniprotkb/F1SR64", "locus": { "chromosome": "15", "start_pos": 125740085, "end_pos": 125732387, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016232", "url": "https://www.ensembl.org/id/ENSSSCG00000016232" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016232", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016232", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19874", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19874", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153145", "url": "https://www.ncbi.nlm.nih.gov/gene/100153145", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "4CE4", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=4CE4&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "4V1A", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=4V1A&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5AJ4&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GAW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GB2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR014720", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014720", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036389", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036389", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055189", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055189", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153145", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153145", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RHIKRWV", "url": "https://omabrowser.org/oma/group/RHIKRWV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SR64", "url": "https://www.orthodb.org/?gene=F1SR64", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11207:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11207:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00004ce4", "url": "https://www.rcsb.org/structure/pdb_00004ce4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00004v1a", "url": "https://www.rcsb.org/structure/pdb_00004v1a", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005aj4", "url": "https://www.rcsb.org/structure/pdb_00005aj4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gaw", "url": "https://www.rcsb.org/structure/pdb_00006gaw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gb2", "url": "https://www.rcsb.org/structure/pdb_00006gb2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydp", "url": "https://www.rcsb.org/structure/pdb_00006ydp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydw", "url": "https://www.rcsb.org/structure/pdb_00006ydw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nqh", "url": "https://www.rcsb.org/structure/pdb_00007nqh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nql", "url": "https://www.rcsb.org/structure/pdb_00007nql", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsh", "url": "https://www.rcsb.org/structure/pdb_00007nsh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsi", "url": "https://www.rcsb.org/structure/pdb_00007nsi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsj", "url": "https://www.rcsb.org/structure/pdb_00007nsj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oin", "url": "https://www.rcsb.org/structure/pdb_00008oin", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oiq", "url": "https://www.rcsb.org/structure/pdb_00008oiq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4CE4", "url": "https://www.rcsb.org/structure/4CE4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4V1A", "url": "https://www.rcsb.org/structure/4V1A", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.rcsb.org/structure/5AJ4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.rcsb.org/structure/6GAW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.rcsb.org/structure/6GB2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.rcsb.org/structure/6YDP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.rcsb.org/structure/6YDW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.rcsb.org/structure/7NQH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.rcsb.org/structure/7NQL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.rcsb.org/structure/7NSH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.rcsb.org/structure/7NSI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.rcsb.org/structure/7NSJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.rcsb.org/structure/8OIN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIQ", "url": "https://www.rcsb.org/structure/8OIQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF22892", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22892", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22935", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22935", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5389840", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5419276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9937383", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230334", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230334", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR64-1", "url": "https://www.uniprot.org/uniprotkb/F1SR64-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASGLVRLLQWGPRRLLAPAAPTLAPPVRGAKKGFRAAYRFQKELERWRLLRCPPPPVRRSEKPNWDYHAEIQAFGHRLQETFSLDLLKTAFVNSCYIKSEEAKRQKLGIDKEAALLNLKDNQELSEQGISFSQTCLTQFFEDAFPDLPTEGVTSLVDFLTSEEVVCHVARNLAVEQLALSAEFPVPPPVLRQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWTITNPMGLLVEELKKRKISAPESRLTRQSGSTTALPVYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKLFGFTENRRPWDYSKPKEHVRAEKTITAS", "length": 332, "header": "tr|F1SR64-1|F1SR64_PIG Isoform 1 of Large ribosomal subunit protein mL44 OS=Sus scrofa OX=9823 GN=MRPL44 PE=1 SV=2 CANONICAL=F1SR64-1" }, "isoforms": [ { "isoform_ac": "F1SR64-1", "url": "https://www.uniprot.org/uniprotkb/F1SR64/entry#F1SR64-1", "sequence": { "sequence": "MASGLVRLLQWGPRRLLAPAAPTLAPPVRGAKKGFRAAYRFQKELERWRLLRCPPPPVRRSEKPNWDYHAEIQAFGHRLQETFSLDLLKTAFVNSCYIKSEEAKRQKLGIDKEAALLNLKDNQELSEQGISFSQTCLTQFFEDAFPDLPTEGVTSLVDFLTSEEVVCHVARNLAVEQLALSAEFPVPPPVLRQTFFAVIGALLQSSGPERTALFIRDFLITQMTGKELFEMWTITNPMGLLVEELKKRKISAPESRLTRQSGSTTALPVYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKLFGFTENRRPWDYSKPKEHVRAEKTITAS", "length": 332, "header": "tr|F1SR64-1|F1SR64_PIG Isoform 1 of Large ribosomal subunit protein mL44 OS=Sus scrofa OX=9823 GN=MRPL44 PE=1 SV=2 CANONICAL=F1SR64-1" }, "locus": { "chromosome": "15", "start_pos": 125739463, "end_pos": 125732437, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017674.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017674.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017195.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017195.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Architecture of the large subunit of the mammalian mitochondrial ribosome.", "journal": "Nature", "date": "2014", "authors": "Greber Basil J, Boehringer Daniel, Leitner Alexander, Bieri Philipp, Voigts-Hoffmann Felix, Erzberger Jan P, Leibundgut Marc, Aebersold Ruedi, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "reference": [ { "type": "PubMed", "id": "24362565", "url": "https://glygen.org/publication/PubMed/24362565" } ] }, { "title": "The complete structure of the large subunit of the mammalian mitochondrial ribosome.", "journal": "Nature", "date": "2014", "authors": "Greber Basil J, Boehringer Daniel, Leibundgut Marc, Bieri Philipp, Leitner Alexander, Schmitz Nikolaus, Aebersold Ruedi, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "reference": [ { "type": "PubMed", "id": "25271403", "url": "https://glygen.org/publication/PubMed/25271403" } ] }, { "title": "Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.", "journal": "Science", "date": "2015", "authors": "Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "reference": [ { "type": "PubMed", "id": "25837512", "url": "https://glygen.org/publication/PubMed/25837512" } ] }, { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. Cell", "date": "2021", "authors": "Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "reference": [ { "type": "PubMed", "id": "33878294", "url": "https://glygen.org/publication/PubMed/33878294" } ] }, { "title": "Molecular basis of translation termination at noncanonical stop codons in human mitochondria.", "journal": "Science", "date": "2023", "authors": "Saurer Martin, Leibundgut Marc, Nadimpalli Hima Priyanka, Scaiola Alain, Sch\u00f6nhut Tanja, Lee Richard G, Siira Stefan J, Rackham Oliver, Dreos Ren\u00e9, Lenar\u010di\u010d Tea, Kummer Eva, Gatfield David, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "reference": [ { "type": "PubMed", "id": "37141370", "url": "https://glygen.org/publication/PubMed/37141370" } ] } ], "pathway": [ { "id": "ssc:100153145", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153145", "resource": "KEGG Pathway" }, { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C5L8-1", "protein_name": "Large ribosomal subunit protein mL44", "gene_name": "MRPL44", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAGLLLLLRASRRLLAAAGTGRVAPGSAPRREKKRWLRAYLEQQRLQAAPRRRSEQPGWDYHAEIQAFGHRLQENFSLDLLKTAFVNSCYIKSEEAKRRDLGVDKDAVALNLRDNAELSARGMSFSRSYLTRSFEAAYPRLPASGVAALVAFLTGRQLVSHVAQNLALPDLALCAQFPAPPAVLHATFFAVVGALLGSSGPERAGLFVRDFLIPQLIGKDLFEIWEVVNPMGLLVEELAKRNISAPEPRITRQLGVSTVLPLYFVGLYCDKKIIAEGPGETLLAAEEEAARVALRKLYGYTENRRPWDYSKPKEGWTAEKAISSN", "length": 326 }, "evidence": [ { "id": "F1SR64", "url": "https://omabrowser.org/oma/group/F1SR64/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F1RB48-1", "protein_name": "Large ribosomal subunit protein mL44", "gene_name": "mrpl44", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAACRALVSRAVLPLHYHHVCRGVMLTQIREKKRWMKAYMFVMRKKLKLEGPPAPKPRSEQPNFDYHAEVEAFGVRLQESFSVDLLKTAFVNSCYLRSEVERRKALGLDSESAILNLKDNTELRDHGQHFTTGFLSDWCKNSFPNLPDEGVAAIAGHLTGSEVICHVARNLAVEELTMSAEFPVPDHILQGTFFAVIGALEQSSGPVRAGLFIRDFLVTQLIGKDLFDMWKVVDPMGLLVEELTRKGVALPEPRLIRSAGASTVLPLYFVGLYSDRKLLAQGPGETVLIAEEEAARVALRKLYGFTENRRPFDFTAPRDQLQKPSTQALTSG", "length": 332 }, "evidence": [ { "id": "F1SR64", "url": "https://omabrowser.org/oma/group/F1SR64/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9CY73-1", "protein_name": "Large ribosomal subunit protein mL44", "gene_name": "Mrpl44", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASAVFRLLQQGPRRLLAPAVPTLAPPVRGVKKGFRAAFRFQKELERWRLLRCPPPPVRRSEKPNWDYHAEVQAFGSRLQETFSLDLLKTAFINSCYIKSEEAKRQSLGIEKEAALLNLKDNQELFEQGLSFSHRCLTQFLEDEFPDLPAEGTESLVSFLTGEAVVCHVARNLAVEQLTLSAEFPVPLPVLRQTFFAVIGALLQSSGPERAALFIRDFLITQMTGKELFEMWTVVNPMGLLVEELKKRNISAPESRLTRQSGSTTALPLYFVGLYCDRKLIAEGPGETVLVAEEEAARVALRKLYGFTENRRPWDYSKPKESPKRAEQTSVAS", "length": 333 }, "evidence": [ { "id": "F1SR64", "url": "https://omabrowser.org/oma/group/F1SR64/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VNC1-1", "protein_name": "Large ribosomal subunit protein mL44", "gene_name": "mRpL44", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSFLRSAVGLLARVKLLEGSPTVQTRRHIKRWVSPTLRELAHRQKKLGPQKPERRSGFVEWNQRSELFAFGKRLGESFELSELQRAFTEKSFAEREEDRRRQLGIEESDLQMPHNSDLVEKGQQIARAYVEAFLQHQLPKVPNEGLQAIASYLLSTETLAHVSTHLGTKDLIQSTEYPPSAESQAKSLHAVIGALASSSGIERAFIFVRDFICTQLNQKDLLEVWTPQEPIQLLEKICQERKLGEAEPRLLGDCGKNTVLAAYQVGIYANRQLLGKGFGEDVKTATETAALDALQSIFDTRDNRRPFDFAIQLEPKTVRLG", "length": 321 }, "evidence": [ { "id": "F1SR64", "url": "https://omabrowser.org/oma/group/F1SR64/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial large ribosomal subunit", "id": "GO:0005762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005762", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "RNA processing", "id": "GO:0006396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006396", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "pmid": "" }, { "name": "mitochondrial translational elongation", "id": "GO:0070125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070125", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "double-stranded RNA binding", "id": "GO:0003725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003725", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "pmid": "" }, { "name": "ribonuclease III activity", "id": "GO:0004525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004525", "evidence": [ { "database": "UniProtKB", "id": "F1SR64", "url": "https://www.uniprot.org/uniprotkb/F1SR64" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SR64", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR64" }, { "id": "PS50137", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50137" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DRBM", "eco_id": "ECO_0000259", "start_pos": 236, "end_pos": 306, "start_aa": "Asn", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 8 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR83-1", "uniprot_ac": "F1SR83", "uniprot_id": "F1SR83_PIG", "mass": { "chemical_mass": 79953.0, "monoisotopic_mass": 79953.0 }, "refseq": {}, "gene_names": [ { "name": "ANKZF1", "type": "recommended", "evidence": [ { "id": "F1SR83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ] } ], "protein_names": [ { "name": "tRNA endonuclease ANKZF1", "type": "recommended", "evidence": [ { "id": "F1SR83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR83/entry#names_and_taxonomy" } ] }, { "name": "Ankyrin repeat and zinc finger domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "F1SR83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR83/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Endonuclease that cleaves polypeptidyl-tRNAs downstream of the ribosome-associated quality control (RQC) pathway to release incompletely synthesized polypeptides for degradation. The RQC pathway disassembles aberrantly stalled translation complexes to recycle or degrade the constituent parts. ANKZF1 acts downstream disassembly of stalled ribosomes and specifically cleaves off the terminal 3'-CCA nucleotides universal to all tRNAs from polypeptidyl-tRNAs, releasing (1) ubiquitinated polypeptides from 60S ribosomal subunit for degradation and (2) cleaved tRNAs. ANKZF1-cleaved tRNAs are then repaired and recycled by ELAC1 and TRNT1. Also plays a role in the cellular response to hydrogen peroxide and in the maintenance of mitochondrial integrity under conditions of cellular stress.", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83#function" }, { "database": "UniProtKB", "id": "ARBA00060260", "url": "https://www.uniprot.org/uniprotkb/ARBA00060260#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ANKZF1", "url": "https://www.uniprot.org/uniprotkb/F1SR83", "locus": { "chromosome": "15", "start_pos": 121273814, "end_pos": 121265740, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016212", "url": "https://www.ensembl.org/id/ENSSSCG00000016212" } ] } } ], "crossref": [ { "id": "F1SR83", "url": "https://alphafold.ebi.ac.uk/entry/F1SR83", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016212", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016212", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041175", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041175", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041540", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041540", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047139", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047139", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16036:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16036:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18716", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18716", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18826", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18826", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR83-1", "url": "https://www.uniprot.org/uniprotkb/F1SR83-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSPAPAAAQASVSISLFDLSADAPVLQGLRLVSHAPGVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCSTCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQHSSTGDLSSISGSEDSDSASEEDLQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQVPPEEPELLLQNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAAPRSAGANLRRYNEATLYKDVRDLLAGPDWTKALEEAGTIMLRAPRSGRALFFGGREAPLQRGDPRLWDIPLPTRRPTFQELQRVLHKLTTLHVHGEDPRATARLDLPQTRWKTVRERKPIKEETKVPSDDNEGLGQKEEAPKQGSESEGEDGSQVELELVELTLGTLDLREFEVLPKQRKRKRNKRERKRDLEAGAQMTLPQQPPEDEAFSQAAPLGPPQEEAKLPGQPELWDVLLAACRAGDVGLLKPWLAASPVDPRVLSLLSAPLGSGGFTLLHAAAAAGRGSVVHLLLDAGADPTVQDSRNRPPYTVAADKSTRNEFRRFMEKHPDAYDYNKAQVPGPLTAEMEARQATRKREQKAARRHREEQQRKRQEQDKQEQEEQRRFAALSDREKRALAAERRLAAQGAPTPQIPHPAVGNVRRCWSCGTSLQGLIPFHYLDFSFCSTRCLQEHRRQAGKPSS", "length": 716, "header": "tr|F1SR83-1|F1SR83_PIG Isoform 1 of tRNA endonuclease ANKZF1 OS=Sus scrofa OX=9823 GN=ANKZF1 PE=3 SV=6 CANONICAL=F1SR83-1" }, "isoforms": [ { "isoform_ac": "F1SR83-1", "url": "https://www.uniprot.org/uniprotkb/F1SR83/entry#F1SR83-1", "sequence": { "sequence": "MSPAPAAAQASVSISLFDLSADAPVLQGLRLVSHAPGVLAQTLRTSCPGSGEKKSPERKPLQCPLDTSEKLCCSTCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALEFEQHSSTGDLSSISGSEDSDSASEEDLQIQDEERAEAEKPNRPRGFHPHRVLFQNAQGQFLDAYRCVLGPRQVPPEEPELLLQNLQSGGPRYCVVLMAAAGHFAGAVFQGREVLTHKTFHRYTVRAKRGTAQGLRDARGAAPRSAGANLRRYNEATLYKDVRDLLAGPDWTKALEEAGTIMLRAPRSGRALFFGGREAPLQRGDPRLWDIPLPTRRPTFQELQRVLHKLTTLHVHGEDPRATARLDLPQTRWKTVRERKPIKEETKVPSDDNEGLGQKEEAPKQGSESEGEDGSQVELELVELTLGTLDLREFEVLPKQRKRKRNKRERKRDLEAGAQMTLPQQPPEDEAFSQAAPLGPPQEEAKLPGQPELWDVLLAACRAGDVGLLKPWLAASPVDPRVLSLLSAPLGSGGFTLLHAAAAAGRGSVVHLLLDAGADPTVQDSRNRPPYTVAADKSTRNEFRRFMEKHPDAYDYNKAQVPGPLTAEMEARQATRKREQKAARRHREEQQRKRQEQDKQEQEEQRRFAALSDREKRALAAERRLAAQGAPTPQIPHPAVGNVRRCWSCGTSLQGLIPFHYLDFSFCSTRCLQEHRRQAGKPSS", "length": 716, "header": "tr|F1SR83-1|F1SR83_PIG Isoform 1 of tRNA endonuclease ANKZF1 OS=Sus scrofa OX=9823 GN=ANKZF1 PE=3 SV=6 CANONICAL=F1SR83-1" }, "locus": { "chromosome": "15", "start_pos": 121273588, "end_pos": 121266127, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017653.6", "url": "https://www.ensembl.org/id/ENSSSCT00000017653.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017175.6", "url": "https://www.ensembl.org/id/ENSSSCP00000017175.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "rescue of stalled ribosome", "id": "GO:0072344", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072344", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "pmid": "" }, { "name": "cellular response to hydrogen peroxide", "id": "GO:0070301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070301", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "pmid": "" }, { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "pmid": "" }, { "name": "protein quality control for misfolded or incompletely synthesized proteins", "id": "GO:0006515", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006515", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "pmid": "" }, { "name": "RNA endonuclease activity", "id": "GO:0004521", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004521", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "pmid": "" }, { "name": "catalytic activity, acting on a tRNA", "id": "GO:0140101", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140101", "evidence": [ { "database": "UniProtKB", "id": "F1SR83", "url": "https://www.uniprot.org/uniprotkb/F1SR83" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SR83-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 716, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SR83-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SR83" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SR83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR83" }, { "id": "PS52044", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52044" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VLRF1", "eco_id": "ECO_0000259", "start_pos": 202, "end_pos": 345, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SR98-1", "uniprot_ac": "F1SR98", "uniprot_id": "F1SR98_PIG", "mass": { "chemical_mass": 15347.0, "monoisotopic_mass": 15347.0 }, "refseq": { "ac": "XP_003126056", "name": "active regulator of SIRT1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126056" }, "gene_names": [ { "name": "RPS19BP1", "type": "recommended", "evidence": [ { "id": "F1SR98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR98" } ] }, { "name": "RPS19BP1", "type": "synonym", "evidence": [ { "id": "XP_003126056", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126056" } ] } ], "protein_names": [ { "name": "Active regulator of SIRT1", "type": "recommended", "evidence": [ { "id": "F1SR98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR98/entry#names_and_taxonomy" } ] }, { "name": "40S ribosomal protein S19-binding protein 1", "type": "synonym", "evidence": [ { "id": "F1SR98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SR98/entry#names_and_taxonomy" } ] }, { "name": "active regulator of SIRT1", "type": "synonym", "evidence": [ { "id": "XP_003126056", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126056" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SR98", "url": "https://www.uniprot.org/uniprotkb/F1SR98" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPS19BP1", "url": "https://www.uniprot.org/uniprotkb/F1SR98", "locus": { "chromosome": "5", "start_pos": 8738799, "end_pos": 8735382, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000060019", "url": "https://www.ensembl.org/id/ENSSSCG00000060019" } ] } } ], "crossref": [ { "id": "100518907", "url": "https://www.ncbi.nlm.nih.gov/gene/100518907", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023262", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023262", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518907", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518907", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KFQREYF", "url": "https://omabrowser.org/oma/group/KFQREYF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SR98", "url": "https://www.orthodb.org/?gene=F1SR98", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31454:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31454:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15684", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15684", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3371453", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126056", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126056", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SR98", "url": "https://www.uniprot.org/uniprotkb/F1SR98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SR98-1", "url": "https://www.uniprot.org/uniprotkb/F1SR98-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAALLRRGLELLGVPEAPEAAPGQTKPSQAPKKRTRKAKATQAQKLRNSAKGKVPKSALAEFQKREHQGYLGVNLRFMTSARSTVSESVTRQIVRQNRGRKACDRPVTKKKKKKKAEGTVFTEEDFQKFQQEYFGS", "length": 137, "header": "tr|F1SR98-1|F1SR98_PIG Isoform 1 of Active regulator of SIRT1 OS=Sus scrofa OX=9823 GN=RPS19BP1 PE=3 SV=3 CANONICAL=F1SR98-1" }, "isoforms": [ { "isoform_ac": "F1SR98-1", "url": "https://www.uniprot.org/uniprotkb/F1SR98/entry#F1SR98-1", "sequence": { "sequence": "MSAALLRRGLELLGVPEAPEAAPGQTKPSQAPKKRTRKAKATQAQKLRNSAKGKVPKSALAEFQKREHQGYLGVNLRFMTSARSTVSESVTRQIVRQNRGRKACDRPVTKKKKKKKAEGTVFTEEDFQKFQQEYFGS", "length": 137, "header": "tr|F1SR98-1|F1SR98_PIG Isoform 1 of Active regulator of SIRT1 OS=Sus scrofa OX=9823 GN=RPS19BP1 PE=3 SV=3 CANONICAL=F1SR98-1" }, "locus": { "chromosome": "5", "start_pos": 8738483, "end_pos": 8735464, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000096876.1", "url": "https://www.ensembl.org/id/ENSSSCT00000096876.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078733.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078733.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SR98", "url": "https://www.uniprot.org/uniprotkb/F1SR98" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518907", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518907", "resource": "KEGG Pathway" }, { "id": "R-SSC-3371453", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371453", "resource": "Reactome", "description": "Regulation of HSF1-mediated heat shock response" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0U1RRW3-1", "protein_name": "Active regulator of SIRT1", "gene_name": "Rps19bp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAALLRRGLELLEASEAPRAVPGQAKASGTPVKQTRRARAKAKQAVKLRNSAKGKVPKSALAEYQKRQCQDHLRANLKFMTSMRSTVPESVTQQILQQNQGRKACDRLVAKMNKKKKKKAEGTVFTDEDFEKFQREYFGS", "length": 141 }, "evidence": [ { "id": "F1SR98", "url": "https://omabrowser.org/oma/group/F1SR98/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6H7J2-1", "protein_name": "Active regulator of SIRT1", "gene_name": "RPS19BP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSAALLRRGLELLGAPEAPGAAPGHTKPSQAPMKRTRKAKATQAQKLRNSAKGKVPKSALAEFRKKERRGYLGVNLRFMTSARSTVDESVTRQIMRQNRGRKACDRPVTKTKKKKKAEGTVFTEEDFQKFQREYFGS", "length": 137 }, "evidence": [ { "id": "F1SR98", "url": "https://omabrowser.org/oma/group/F1SR98/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F0U9-1", "protein_name": "Active regulator of SIRT1", "gene_name": "rps19bp1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSASVIRRGLELFSEKDGAKHKQKRNSSSKKRIRQLQRAGQSSQSNNNTVKDKHIRSAVDEYRKKQKKSQLSSNLKYFLRTSSTTQKQHTAKEVQQSSSRRSCDQPDLPEAKPKETSVFTEQEFQTFQQEYFSRL", "length": 135 }, "evidence": [ { "id": "F1SR98", "url": "https://omabrowser.org/oma/group/F1SR98/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3IHE1-1", "protein_name": "Active regulator of SIRT1", "gene_name": "Rps19bp1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSAALLRRGLELLAASEASRAAPGQAKTSGAPVKRTRRARAKASQALKLRNSAKGKVPKSALAEYQKRQCQDHLKANLKFMTSVRSTVPESVTQQILQQSQGRKACDRVVTKTKKKKKKAEGTVFTEEDFQKFQREYFGS", "length": 140 }, "evidence": [ { "id": "F1SR98", "url": "https://omabrowser.org/oma/group/F1SR98/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q86WX3-1", "protein_name": "Active regulator of SIRT1", "gene_name": "RPS19BP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAALLRRGLELLAASEAPRDPPGQAKPRGAPVKRPRKTKAIQAQKLRNSAKGKVPKSALDEYRKRECRDHLRVNLKFLTRTRSTVAESVSQQILRQNRGRKACDRPVAKTKKKKAEGTVFTEEDFQKFQQEYFGS", "length": 136 }, "evidence": [ { "id": "F1SR98", "url": "https://omabrowser.org/oma/group/F1SR98/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C6B9-1", "protein_name": "Active regulator of SIRT1", "gene_name": "Rps19bp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAALVRRGLELLAASEAPRAVPGQVQASGTPAKRTRRARAKASQALKLRNSAKGKAPKSALAEYQKRQCRDHLKANLKFMTSMRSTVPESVTQQILQQNQGRKACDRLVAKTKNKKKKKKKAEGTVFTEEDFQKFQREYFGS", "length": 143 }, "evidence": [ { "id": "F1SR98", "url": "https://omabrowser.org/oma/group/F1SR98/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SR98", "url": "https://www.uniprot.org/uniprotkb/F1SR98" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SR98", "url": "https://www.uniprot.org/uniprotkb/F1SR98" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F1SR98", "url": "https://www.uniprot.org/uniprotkb/F1SR98" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "F1SR98", "url": "https://www.uniprot.org/uniprotkb/F1SR98" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ribosomal small subunit biogenesis", "id": "GO:0042274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042274", "evidence": [ { "database": "UniProtKB", "id": "F1SR98", "url": "https://www.uniprot.org/uniprotkb/F1SR98" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRA0-1", "uniprot_ac": "F1SRA0", "uniprot_id": "F1SRA0_PIG", "mass": { "chemical_mass": 63858.0, "monoisotopic_mass": 63858.0 }, "refseq": {}, "gene_names": [ { "name": "ENTHD1", "type": "recommended", "evidence": [ { "id": "F1SRA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" } ] } ], "protein_names": [ { "name": "ENTH domain containing 1", "type": "synonym", "evidence": [ { "id": "F1SRA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRA0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRA0", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ENTHD1", "url": "https://www.uniprot.org/uniprotkb/F1SRA0", "locus": { "chromosome": "5", "start_pos": 8552925, "end_pos": 8447873, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000081", "url": "https://www.ensembl.org/id/ENSSSCG00000000081" } ] } } ], "crossref": [ { "id": "F1SRA0", "url": "https://alphafold.ebi.ac.uk/entry/F1SRA0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000081", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000081", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16990", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16990", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR008942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013809", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013809", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12276", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12276", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12276:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12276:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01417", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01417", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SRA0", "url": "https://www.uniprot.org/uniprotkb/F1SRA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAFRRQVKNFVKNYSDAEIKVREATSNDPWGPSSSLMLDISDLTFNTISLSEIMNMLWQRLSDHGKNWRHVYKSLTLMDYLIKNGSKKVIQHCREGFPNLQSLKDFQHIDEAGKDQGYYIREKSKQVITLLMDEQLLHREREVACRTRRRTSYSMTLPKRLPGTGNSPTACASALHQKFLHQRRKTHCFSIIIHLLEQIEAVRLIFFRFHVFSRKDLMLFCEDDPKPVLPTIPAITSSTAWLSEGQTDGCNLWDADVVPVPSEKSPSLQTNVSLDKKSDSTITNAVIENPLQTPLEKQSAAKSFETLTALPASRSLSKEDFISSHLRISKSDSTFYNQGSTAVSKDPRRPAQSSVAQLDDENLKTLTTLGESTNKRAQGTASFSTLSVSSPDSASPEKSVHPLPPVSVRSSFWTLFHQQSSSASVKEKTARVQHPFAPRGPLSSDEEETDNIDLLEILPDNSDSAKKQTSLLSRSNWVEFSTQNVDPFTSLSCSSFQATQDLPREPEANNSTNVLLGEVKNAIVKLHEDLSMVIRELNVINSRLVSMSGTSPQVSKSLQLPQDSEGGSEQV", "length": 571, "header": "tr|F1SRA0-1|F1SRA0_PIG Isoform 1 of ENTH domain containing 1 OS=Sus scrofa OX=9823 GN=ENTHD1 PE=4 SV=4 CANONICAL=F1SRA0-1" }, "isoforms": [ { "isoform_ac": "F1SRA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRA0/entry#F1SRA0-1", "sequence": { "sequence": "MAFRRQVKNFVKNYSDAEIKVREATSNDPWGPSSSLMLDISDLTFNTISLSEIMNMLWQRLSDHGKNWRHVYKSLTLMDYLIKNGSKKVIQHCREGFPNLQSLKDFQHIDEAGKDQGYYIREKSKQVITLLMDEQLLHREREVACRTRRRTSYSMTLPKRLPGTGNSPTACASALHQKFLHQRRKTHCFSIIIHLLEQIEAVRLIFFRFHVFSRKDLMLFCEDDPKPVLPTIPAITSSTAWLSEGQTDGCNLWDADVVPVPSEKSPSLQTNVSLDKKSDSTITNAVIENPLQTPLEKQSAAKSFETLTALPASRSLSKEDFISSHLRISKSDSTFYNQGSTAVSKDPRRPAQSSVAQLDDENLKTLTTLGESTNKRAQGTASFSTLSVSSPDSASPEKSVHPLPPVSVRSSFWTLFHQQSSSASVKEKTARVQHPFAPRGPLSSDEEETDNIDLLEILPDNSDSAKKQTSLLSRSNWVEFSTQNVDPFTSLSCSSFQATQDLPREPEANNSTNVLLGEVKNAIVKLHEDLSMVIRELNVINSRLVSMSGTSPQVSKSLQLPQDSEGGSEQV", "length": 571, "header": "tr|F1SRA0-1|F1SRA0_PIG Isoform 1 of ENTH domain containing 1 OS=Sus scrofa OX=9823 GN=ENTHD1 PE=4 SV=4 CANONICAL=F1SRA0-1" }, "locus": { "chromosome": "5", "start_pos": 8552922, "end_pos": 8457520, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000087.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000087.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000086.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000086.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRA0", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "clathrin vesicle coat", "id": "GO:0030125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030125", "evidence": [ { "database": "UniProtKB", "id": "F1SRA0", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" } ], "pmid": "" }, { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "F1SRA0", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRA0", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phospholipid binding", "id": "GO:0005543", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005543", "evidence": [ { "database": "UniProtKB", "id": "F1SRA0", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" } ], "pmid": "" }, { "name": "clathrin binding", "id": "GO:0030276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030276", "evidence": [ { "database": "UniProtKB", "id": "F1SRA0", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "F1SRA0", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 13, "end_pos": 15, "annotation": "n_glycosylation_sequon" }, { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" }, { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRA0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 571, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRA0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRA0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRA0" }, { "id": "PS50942", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50942" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ENTH", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 141, "start_aa": "Asn", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 13, "end_pos": 15 }, { "start_pos": 271, "end_pos": 273 }, { "start_pos": 509, "end_pos": 511 }, { "start_pos": 510, "end_pos": 512 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRC8-1", "uniprot_ac": "F1SRC8", "uniprot_id": "F1SRC8_PIG", "mass": { "chemical_mass": 22190.0, "monoisotopic_mass": 22190.0 }, "refseq": { "ac": "XP_005669508", "name": "tetranectin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669508" }, "gene_names": [ { "name": "CLEC3B", "type": "recommended", "evidence": [ { "id": "F1SRC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ] }, { "name": "CLEC3B", "type": "synonym", "evidence": [ { "id": "XP_005669508", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669508" } ] } ], "protein_names": [ { "name": "C-type lectin domain family 3 member B", "type": "synonym", "evidence": [ { "id": "F1SRC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRC8/entry#names_and_taxonomy" } ] }, { "name": "tetranectin", "type": "synonym", "evidence": [ { "id": "XP_005669508", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669508" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CLEC3B", "url": "https://www.uniprot.org/uniprotkb/F1SRC8", "locus": { "chromosome": "13", "start_pos": 28229096, "end_pos": 28219500, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011299", "url": "https://www.ensembl.org/id/ENSSSCG00000011299" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011299", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011299", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03596", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03596", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620511", "url": "https://www.ncbi.nlm.nih.gov/gene/100620511", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051663", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051663", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620511", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620511", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DGHWVDQ", "url": "https://omabrowser.org/oma/group/DGHWVDQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRC8", "url": "https://www.orthodb.org/?gene=F1SRC8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22799", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22799", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22799:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22799:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005669508", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005669508", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SRC8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELWGPYLLLCLFSLLTQVTAETPTPKVKKPANAKKDAASPKILEELKTQLDTLAQEVALLKEQQALQTVCLKGTKVHMKCFLAFVQAKTFHEASEDCISRGGTLGTPKTGSENDALYEYLRQSVGAEAEVWLGFNDMADEGAWVDMTGGHIAYKNWETEITAQPDGGKVENCAALAGAANGKWFDKRCRDKLPYVCQFAIV", "length": 202, "header": "tr|F1SRC8-1|F1SRC8_PIG Isoform 1 of C-type lectin domain family 3 member B OS=Sus scrofa OX=9823 GN=CLEC3B PE=1 SV=1 CANONICAL=F1SRC8-1" }, "isoforms": [ { "isoform_ac": "F1SRC8-1", "url": "https://www.uniprot.org/uniprotkb/F1SRC8/entry#F1SRC8-1", "sequence": { "sequence": "MELWGPYLLLCLFSLLTQVTAETPTPKVKKPANAKKDAASPKILEELKTQLDTLAQEVALLKEQQALQTVCLKGTKVHMKCFLAFVQAKTFHEASEDCISRGGTLGTPKTGSENDALYEYLRQSVGAEAEVWLGFNDMADEGAWVDMTGGHIAYKNWETEITAQPDGGKVENCAALAGAANGKWFDKRCRDKLPYVCQFAIV", "length": 202, "header": "tr|F1SRC8-1|F1SRC8_PIG Isoform 1 of C-type lectin domain family 3 member B OS=Sus scrofa OX=9823 GN=CLEC3B PE=1 SV=1 CANONICAL=F1SRC8-1" }, "locus": { "chromosome": "13", "start_pos": 28228937, "end_pos": 28219555, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000036280.4", "url": "https://www.ensembl.org/id/ENSSSCT00000036280.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041870.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041870.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620511", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620511", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9PDC0-1", "protein_name": "Tetranectin", "gene_name": "clec3ba", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFGLICTSSVLLCMFFSTGCTYAEEKMDLKAVKFLLCVICLVKSSPEQSLTKRKNGKKESNSAAIEELKKQIDQIIQDLNLLKEQQALQTVCLKGFKIPGKCFLVDTVKKDFHSANDDCIAKGGILSTPMSGHENDQLQEYVQQTVGPETHIWLGVNDMIKEGEWIDLTGSPIRFKNWESEITHQPDGGRTHNCAVLSSTANGKWFDEDCRGEKASVCQFNIV", "length": 223 }, "evidence": [ { "id": "F1SRC8", "url": "https://omabrowser.org/oma/group/F1SRC8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P05452-1", "protein_name": "Tetranectin", "gene_name": "CLEC3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MELWGAYLLLCLFSLLTQVTTEPPTQKPKKIVNAKKDVVNTKMFEELKSRLDTLAQEVALLKEQQALQTVCLKGTKVHMKCFLAFTQTKTFHEASEDCISRGGTLGTPQTGSENDALYEYLRQSVGNEAEIWLGLNDMAAEGTWVDMTGARIAYKNWETEITAQPDGGKTENCAVLSGAANGKWFDKRCRDQLPYICQFGIV", "length": 202 }, "evidence": [ { "id": "F1SRC8", "url": "https://omabrowser.org/oma/group/F1SRC8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of plasminogen activation", "id": "GO:0010756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010756", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" }, { "name": "ossification", "id": "GO:0001503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001503", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" }, { "name": "bone mineralization", "id": "GO:0030282", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030282", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" }, { "name": "granular component", "id": "GO:0001652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001652", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "heparin binding", "id": "GO:0008201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008201", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" }, { "name": "kringle domain binding", "id": "GO:0036143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036143", "evidence": [ { "database": "UniProtKB", "id": "F1SRC8", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRC8" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 198, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRD5-1", "uniprot_ac": "F1SRD5", "uniprot_id": "F1SRD5_PIG", "mass": { "chemical_mass": 64177.0, "monoisotopic_mass": 64177.0 }, "refseq": {}, "gene_names": [ { "name": "POMGNT2", "type": "recommended", "evidence": [ { "id": "F1SRD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRD5" } ] } ], "protein_names": [ { "name": "Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2", "type": "recommended", "evidence": [ { "id": "F1SRD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRD5/entry#names_and_taxonomy" } ] }, { "name": "2.4.1.312", "type": "synonym", "evidence": [ { "id": "F1SRD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRD5/entry#names_and_taxonomy" } ] }, { "name": "Extracellular O-linked N-acetylglucosamine transferase-like", "type": "synonym", "evidence": [ { "id": "F1SRD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRD5/entry#names_and_taxonomy" } ] }, { "name": "Glycosyltransferase-like domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "F1SRD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRD5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "O-linked mannose beta-1,4-N-acetylglucosaminyltransferase that transfers UDP-N-acetyl-D-glucosamine to the 4-position of the mannose to generate N-acetyl-D-glucosamine-beta-1,4-O-D-mannosylprotein. Involved in the biosynthesis of the phosphorylated O-mannosyl trisaccharide (N-acetylgalactosamine-beta-3-N-acetylglucosamine-beta-4-(phosphate-6-)mannose), a carbohydrate structure present in alpha-dystroglycan (DAG1), which is required for binding laminin G-like domain-containing extracellular proteins with high affinity.", "evidence": [ { "database": "UniProtKB", "id": "F1SRD5", "url": "https://www.uniprot.org/uniprotkb/F1SRD5#function" }, { "database": "UniProtKB", "id": "ARBA00045959", "url": "https://www.uniprot.org/uniprotkb/ARBA00045959#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRD5", "url": "https://www.uniprot.org/uniprotkb/F1SRD5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POMGNT2", "url": "https://www.uniprot.org/uniprotkb/F1SRD5", "locus": { "chromosome": "13", "start_pos": 26526133, "end_pos": 26523983, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011293", "url": "https://www.ensembl.org/id/ENSSSCG00000011293" } ] } } ], "crossref": [ { "id": "F1SRD5", "url": "https://alphafold.ebi.ac.uk/entry/F1SRD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011293", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011293", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR20961", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20961", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20961:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20961:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04577", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04577", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8932505", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8932505", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "37663", "url": "https://www.rhea-db.org/rhea/37663", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SRD5", "url": "https://www.uniprot.org/uniprotkb/F1SRD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRD5-1", "url": "https://www.uniprot.org/uniprotkb/F1SRD5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHLSAVLNALLVSVLAAVLWKHVRLREHAASLEEELVLSRRAPEPAPTLRIDYPKALQILTEGGTHMVCTGRTHTDRICRFKWLCYSSEAEEFIFFHGNASVMLPSLGSRRFQPALLDLSTVEDHNTQYFNFVELPAAALRFMPKPVFVPDMALIANRFNPDNLMHARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKALGRLLCFSHAFVGLSKVTTWYQYGFVQPQGPKANILVSGNEIRQFARFLTEKLNVSHAGGALGEEYILVFSRTQNRLILNEAELLLALAQEFQMKTVTVSLEDHAFADVVRLVSNASMLVSMHGAQLVTALFLPRGAAVVELFPYAVNPDHYTPYKTLATLPGMDLQYIAWRNTMPENTVTHPERPWDQGGIAHLDRAEQARILQSQEVPRHLCCRNPEWLFRIYQDTKVDIPSLIQTIRRVVKGRPGPRKQKWTVSLYPGKVREARCQSSVQGASEARLTVSWQIPWNLKYLKVREVKYEVWLQEQGENTYVPYILTLQNHTFTENIKPFTTYLVWVRCIFNKTLLGPFADVFHHHEIHL", "length": 561, "header": "tr|F1SRD5-1|F1SRD5_PIG Isoform 1 of Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 OS=Sus scrofa OX=9823 GN=POMGNT2 PE=3 SV=3 CANONICAL=F1SRD5-1" }, "isoforms": [ { "isoform_ac": "F1SRD5-1", "url": "https://www.uniprot.org/uniprotkb/F1SRD5/entry#F1SRD5-1", "sequence": { "sequence": "MHLSAVLNALLVSVLAAVLWKHVRLREHAASLEEELVLSRRAPEPAPTLRIDYPKALQILTEGGTHMVCTGRTHTDRICRFKWLCYSSEAEEFIFFHGNASVMLPSLGSRRFQPALLDLSTVEDHNTQYFNFVELPAAALRFMPKPVFVPDMALIANRFNPDNLMHARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKALGRLLCFSHAFVGLSKVTTWYQYGFVQPQGPKANILVSGNEIRQFARFLTEKLNVSHAGGALGEEYILVFSRTQNRLILNEAELLLALAQEFQMKTVTVSLEDHAFADVVRLVSNASMLVSMHGAQLVTALFLPRGAAVVELFPYAVNPDHYTPYKTLATLPGMDLQYIAWRNTMPENTVTHPERPWDQGGIAHLDRAEQARILQSQEVPRHLCCRNPEWLFRIYQDTKVDIPSLIQTIRRVVKGRPGPRKQKWTVSLYPGKVREARCQSSVQGASEARLTVSWQIPWNLKYLKVREVKYEVWLQEQGENTYVPYILTLQNHTFTENIKPFTTYLVWVRCIFNKTLLGPFADVFHHHEIHL", "length": 561, "header": "tr|F1SRD5-1|F1SRD5_PIG Isoform 1 of Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 OS=Sus scrofa OX=9823 GN=POMGNT2 PE=3 SV=3 CANONICAL=F1SRD5-1" }, "locus": { "chromosome": "13", "start_pos": 26526130, "end_pos": 26523983, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012363.3", "url": "https://www.ensembl.org/id/ENSSSCT00000012363.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012040.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012040.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRD5", "url": "https://www.uniprot.org/uniprotkb/F1SRD5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8932505", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8932505", "resource": "Reactome", "description": "DAG1 core M3 glycosylations" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein O-acetylglucosaminyltransferase activity", "id": "GO:0097363", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097363", "evidence": [ { "database": "UniProtKB", "id": "F1SRD5", "url": "https://www.uniprot.org/uniprotkb/F1SRD5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SRD5", "url": "https://www.uniprot.org/uniprotkb/F1SRD5" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SRD5", "url": "https://www.uniprot.org/uniprotkb/F1SRD5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein O-linked glycosylation via mannose", "id": "GO:0035269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035269", "evidence": [ { "database": "UniProtKB", "id": "F1SRD5", "url": "https://www.uniprot.org/uniprotkb/F1SRD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 521, "end_pos": 523, "annotation": "n_glycosylation_sequon" }, { "start_pos": 543, "end_pos": 545, "annotation": "n_glycosylation_sequon" }, { "start_pos": 99, "end_pos": 101, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "37663", "name": "", "equation": "3-O-(alpha-D-mannosyl)-L-threonyl-[protein] + UDP-N-acetyl-alpha-D-glucosamine = 3-O-(N-acetyl-beta-D-glucosaminyl-(1->4)-alpha-D-mannosyl)-L-threonyl-[protein] + UDP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "37663", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/37663" } ] }, { "id": "R-SSC-8879117", "name": "POMGNT2 transfers GlcNAc to Man-DAG1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "endoplasmic reticulum lumen, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-3499326", "R-SSC-5615647" ], "output_participant_list": [ "R-SSC-8931673", "R-ALL-158602" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8879117", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8879117" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-158602", "participant_name": "UDP [endoplasmic reticulum lumen]", "crossref": [ { "id": "ZINC000004490939", "database": "ZINC", "url": "" }, { "id": "C00015", "database": "COMPOUND", "url": "" }, { "id": "58223", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-3499326", "participant_name": "UDP-GlcNAc [endoplasmic reticulum lumen]", "crossref": [ { "id": "57705", "database": "ChEBI", "url": "" }, { "id": "ZINC000008551100", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-SSC-5615647", "participant_name": "DAG1 [endoplasmic reticulum lumen]", "crossref": [ { "id": "A0A287BAM0", "database": "UniProt", "url": "" }, { "id": "XP_020924418.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924409.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000036961", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000048891", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000034357", "database": "ENSEMBL", "url": "" }, { "id": "XP_020924411.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924419.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924401.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924414.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924402.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924399.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924400.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924406.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924405.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924413.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924416.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924403.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924410.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924412.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924408.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924417.1", "database": "RefSeq", "url": "" }, { "id": "87151", "database": "VGNC", "url": "" }, { "id": "XP_020924407.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-8931673", "participant_name": "DAG1 [endoplasmic reticulum lumen]", "crossref": [ { "id": "XP_020924401.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924402.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924400.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924414.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924419.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924399.1", "database": "RefSeq", "url": "" }, { "id": "A0A287BAM0", "database": "UniProt", "url": "" }, { "id": "XP_020924418.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924409.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000036961", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000048891", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000034357", "database": "ENSEMBL", "url": "" }, { "id": "XP_020924411.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924406.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924405.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924413.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924416.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924403.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924410.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924412.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924408.1", "database": "RefSeq", "url": "" }, { "id": "XP_020924417.1", "database": "RefSeq", "url": "" }, { "id": "87151", "database": "VGNC", "url": "" }, { "id": "XP_020924407.1", "database": "RefSeq", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRD5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 561, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRD5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRD5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRD5" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 466, "end_pos": 561, "start_aa": "Ala", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G01141WK", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G01968NV", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G02946BE", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G03053IU", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G03571IM", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G03781WX", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G03798SV", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G03994NJ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G05855AL", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G06653IL", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G07265MJ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G07680YZ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G09225SF", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G10194GK", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G10737JY", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G12604EN", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G12975QJ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G13019VO", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G14250GH", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G14692XF", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G16327EQ", "type": "O-linked", "subtype": "O-mannose core M3" }, { "glytoucan_ac": "G17188NM", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G20244ME", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G20382FE", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G21641ZY", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G22205HM", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G22452NY", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G22573IV", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G22699IF", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G23222GW", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G23378JF", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G23730GA", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G24832AK", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G26485ZL", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G27478HS", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G31681LQ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G35162CZ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G35300PC", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G37561SP", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G39925TV", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G41157KT", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G41178OD", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G43111EJ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G43890IQ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G45349TS", "type": "O-linked", "subtype": "O-mannose core M3" }, { "glytoucan_ac": "G45472PF", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G46135BO", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G47076UN", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G48860SN", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G49157NY", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G49916XD", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G59399RR", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G59624GO", "type": "O-linked", "subtype": "O-mannose core M3" }, { "glytoucan_ac": "G59684CA", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G60689JZ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G61247ZD", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G61335UM", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G63075IR", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G63610QZ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G63679ZU", "type": "O-linked", "subtype": "O-mannose core M3" }, { "glytoucan_ac": "G64548HA", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G67028OV", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G67229ED", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G71626IG", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G76052RG", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G76463QM", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G79363XM", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G81479HU", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G82349CV", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G82453SK", "type": "O-linked", "subtype": "O-mannose core M3" }, { "glytoucan_ac": "G82710QT", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G83043MX", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G84139GA", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G85101OC", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G87949VM", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G88099FG", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G90853AM", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G91549QU", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G94877LL", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G95053SH", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G97041TX", "type": "O-linked", "subtype": "O-mannose core M3" }, { "glytoucan_ac": "G97531BE", "type": "O-linked", "subtype": "O-mannose core M3" }, { "glytoucan_ac": "G99005BY", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G99210HQ", "type": "O-linked", "subtype": "O-mannose core, other" }, { "glytoucan_ac": "G99730GQ", "type": "O-linked", "subtype": "O-mannose core, other" } ], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 254, "end_pos": 256 }, { "start_pos": 315, "end_pos": 317 }, { "start_pos": 521, "end_pos": 523 }, { "start_pos": 543, "end_pos": 545 }, { "start_pos": 99, "end_pos": 101 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRF1-1", "uniprot_ac": "F1SRF1", "uniprot_id": "F1SRF1_PIG", "mass": { "chemical_mass": 69595.0, "monoisotopic_mass": 69595.0 }, "refseq": {}, "gene_names": [ { "name": "KLHL40", "type": "recommended", "evidence": [ { "id": "F1SRF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ] } ], "protein_names": [ { "name": "Kelch like family member 40", "type": "synonym", "evidence": [ { "id": "F1SRF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRF1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin ligase complex that acts as a key regulator of skeletal muscle development. The BCR(KLHL40) complex acts by mediating ubiquitination and degradation of TFDP1, thereby regulating the activity of the E2F:DP transcription factor complex. Promotes stabilization of LMOD3 by acting as a negative regulator of LMOD3 ubiquitination; the molecular process by which it negatively regulates ubiquitination of LMOD3 is however unclear.", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1#function" }, { "database": "UniProtKB", "id": "ARBA00059131", "url": "https://www.uniprot.org/uniprotkb/ARBA00059131#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLHL40", "url": "https://www.uniprot.org/uniprotkb/F1SRF1", "locus": { "chromosome": "13", "start_pos": 26211522, "end_pos": 26202677, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011286", "url": "https://www.ensembl.org/id/ENSSSCG00000011286" } ] } } ], "crossref": [ { "id": "F1SRF1", "url": "https://alphafold.ebi.ac.uk/entry/F1SRF1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011286", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011286", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017096", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017096", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24681", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24681", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRF1-1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALGLEQAEEQRLYQQTLLQDGLKDMLDHGKFLDCVVRVGEREFPCHRLVLAACSPYFRARFLAEPESAGELRLEEVSPDVVAQVLHYLYTSEIALDEASVQDLFAAAHRFQIPSIFTICVSFLQKRLCLANCLAVFRLGLLLDCARLAVAARDFICARFSLVSRDADFLGLSADELIAIISSDGLNVEKEEAVFEAVMRWASSGDAEAQAERQRTLPTVFESVRCRLLPRAFLESRVERHPLVRAQPELLRKVQMVKDAHEGRLTVLRKKKKEKGKEAAGAKATDGTAEAKAEENEEEDERVLPGILNDTLRFGMFLQDLIFMISEEGAVAYDPAANECYCASLSTQIPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGRELKDGERSLDSVMCYDRLSFKWGESDPLPYAVYGHAVLSYMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWRELAPMQMARSLFGATVHDGRIFVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLAGTLYAVGGFATLETESGELVPTELNDIWRYNEDEKKWEGVLREIAYAAGATFLPVRLNVLRLTKL", "length": 623, "header": "tr|F1SRF1-1|F1SRF1_PIG Isoform 1 of Kelch like family member 40 OS=Sus scrofa OX=9823 GN=KLHL40 PE=3 SV=3 CANONICAL=F1SRF1-1" }, "isoforms": [ { "isoform_ac": "F1SRF1-1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1/entry#F1SRF1-1", "sequence": { "sequence": "MALGLEQAEEQRLYQQTLLQDGLKDMLDHGKFLDCVVRVGEREFPCHRLVLAACSPYFRARFLAEPESAGELRLEEVSPDVVAQVLHYLYTSEIALDEASVQDLFAAAHRFQIPSIFTICVSFLQKRLCLANCLAVFRLGLLLDCARLAVAARDFICARFSLVSRDADFLGLSADELIAIISSDGLNVEKEEAVFEAVMRWASSGDAEAQAERQRTLPTVFESVRCRLLPRAFLESRVERHPLVRAQPELLRKVQMVKDAHEGRLTVLRKKKKEKGKEAAGAKATDGTAEAKAEENEEEDERVLPGILNDTLRFGMFLQDLIFMISEEGAVAYDPAANECYCASLSTQIPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGRELKDGERSLDSVMCYDRLSFKWGESDPLPYAVYGHAVLSYMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWRELAPMQMARSLFGATVHDGRIFVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLAGTLYAVGGFATLETESGELVPTELNDIWRYNEDEKKWEGVLREIAYAAGATFLPVRLNVLRLTKL", "length": 623, "header": "tr|F1SRF1-1|F1SRF1_PIG Isoform 1 of Kelch like family member 40 OS=Sus scrofa OX=9823 GN=KLHL40 PE=3 SV=3 CANONICAL=F1SRF1-1" }, "locus": { "chromosome": "13", "start_pos": 26208782, "end_pos": 26202677, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012356.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012356.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012033.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012033.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "pmid": "" }, { "name": "I band", "id": "GO:0031674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031674", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "pmid": "" }, { "name": "A band", "id": "GO:0031672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031672", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "pmid": "" }, { "name": "Cul3-RING ubiquitin ligase complex", "id": "GO:0031463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031463", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "pmid": "" }, { "name": "skeletal muscle fiber development", "id": "GO:0048741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048741", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "pmid": "" }, { "name": "negative regulation of protein ubiquitination", "id": "GO:0031397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031397", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "pmid": "" }, { "name": "negative regulation of proteasomal ubiquitin-dependent protein catabolic process", "id": "GO:0032435", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032435", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin-like ligase-substrate adaptor activity", "id": "GO:1990756", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990756", "evidence": [ { "database": "UniProtKB", "id": "F1SRF1", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRF1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 623, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRF1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRF1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRF1" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 98, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 309, "end_pos": 311 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRI0-1", "uniprot_ac": "F1SRI0", "uniprot_id": "TPPC2_PIG", "mass": { "chemical_mass": 16415.0, "monoisotopic_mass": 16415.0 }, "refseq": { "ac": "NP_001231738", "name": "trafficking protein particle complex subunit 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231738" }, "gene_names": [ { "name": "TRAPPC2", "type": "recommended", "evidence": [ { "id": "F1SRI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ] }, { "name": "TRAPPC2", "type": "synonym", "evidence": [ { "id": "NP_001231738", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231738" } ] } ], "protein_names": [ { "name": "Trafficking protein particle complex subunit 2", "type": "recommended", "evidence": [ { "id": "F1SRI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI0/entry#names_and_taxonomy" } ] }, { "name": "trafficking protein particle complex 2", "type": "synonym", "evidence": [ { "id": "NP_001231738", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231738" } ] }, { "name": "trafficking protein particle complex subunit 2", "type": "synonym", "evidence": [ { "id": "NP_001231738", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231738" } ] } ], "function": [ { "annotation": "Prevents ENO1-mediated transcriptional repression and antagonizes ENO1-mediated cell death. May play a role in vesicular transport from endoplasmic reticulum to Golgi (By similarity).", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRAPPC2", "url": "https://www.uniprot.org/uniprotkb/F1SRI0", "locus": { "chromosome": "X", "start_pos": 10353419, "end_pos": 10366106, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012124", "url": "https://www.ensembl.org/id/ENSSSCG00000012124" } ] } } ], "crossref": [ { "id": "F1SRI0", "url": "https://alphafold.ebi.ac.uk/entry/F1SRI0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd14825", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14825", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513447", "url": "https://www.ncbi.nlm.nih.gov/gene/100513447", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513447", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513447", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RYMNQFI", "url": "https://omabrowser.org/oma/group/RYMNQFI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRI0", "url": "https://www.orthodb.org/?gene=F1SRI0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12403", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12403", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-204005", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231738", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231738", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRI0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS", "length": 140, "header": "sp|F1SRI0-1|TPPC2_PIG Isoform 1 of Trafficking protein particle complex subunit 2 OS=Sus scrofa OX=9823 GN=TRAPPC2 PE=2 SV=2 CANONICAL=F1SRI0-1" }, "isoforms": [ { "isoform_ac": "F1SRI0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRI0/entry#F1SRI0-1", "sequence": { "sequence": "MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS", "length": 140, "header": "sp|F1SRI0-1|TPPC2_PIG Isoform 1 of Trafficking protein particle complex subunit 2 OS=Sus scrofa OX=9823 GN=TRAPPC2 PE=2 SV=2 CANONICAL=F1SRI0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries.", "journal": "Nucleic Acids Res.", "date": "2004", "authors": "Uenishi Hirohide, Eguchi Tomoko, Suzuki Kohei, Sawazaki Tetsuya, Toki Daisuke, Shinkai Hiroki, Okumura Naohiko, Hamasima Noriyuki, Awata Takashi", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "reference": [ { "type": "PubMed", "id": "14681463", "url": "https://glygen.org/publication/PubMed/14681463" } ] }, { "title": "Comparative analysis of protein coding sequences from human, mouse and the domesticated pig.", "journal": "BMC Biol.", "date": "2005", "authors": "J\u00f8rgensen Frank Gr\u00f8nlund, Hobolth Asger, Hornsh\u00f8j Henrik, Bendixen Christian, Fredholm Merete, Schierup Mikkel Heide", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "reference": [ { "type": "PubMed", "id": "15679890", "url": "https://glygen.org/publication/PubMed/15679890" } ] } ], "pathway": [ { "id": "ssc:100513447", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513447", "resource": "KEGG Pathway" }, { "id": "R-SSC-204005", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-204005", "resource": "Reactome", "description": "COPII-mediated vesicle transport" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MDF4-1", "protein_name": "Trafficking protein particle complex subunit 2", "gene_name": "Trappc2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS", "length": 140 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F4HTY0-1", "protein_name": "SNARE-like superfamily protein", "gene_name": "TRAPPC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MANTACFIIVGRNDIPIYEAEVGSAAKREDAAQLHQFILHAALDVVQDLAWTTSAMFLKSVDRFNDLVVSVYVTAGHTRLMLLHDSRNEDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL", "length": 135 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DI81-1", "protein_name": "Trafficking protein particle complex subunit 2", "gene_name": "TRAPPC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS", "length": 140 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DI82-1", "protein_name": "Trafficking protein particle complex subunit 2B", "gene_name": "TRAPPC2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS", "length": 140 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P38334-1", "protein_name": "Trafficking protein particle complex subunit 20", "gene_name": "TRS20", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MPQYFAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVEDLQWQINPTSQLNGNGGNGSNGGGGFLRSRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSANSSVVIDDNNMRSFYQEVHELYVKTLMNPFYKITDPIRSPAFDSRVRTLARKHLSK", "length": 175 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q08CN0-1", "protein_name": "Trafficking protein particle complex subunit 2", "gene_name": "trappc2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSGSFYFVMVGHHDNPVFELEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFNDVYDLYVKFAMNPFYEVNAPIRSTAFERKVQFLGKKHLLS", "length": 140 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3T0F2-1", "protein_name": "Trafficking protein particle complex subunit 2", "gene_name": "TRAPPC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS", "length": 140 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54RV6-1", "protein_name": "Trafficking protein particle complex subunit 2", "gene_name": "trappc2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSTFTFLIIGKNDNPLYEIEFPITVQKKETYVLQYIAHGSLDIVEEHVWKSNNMYLKIIDKFNKVQISSFVTAGHIKFLLLHEKKDEDAIKNFFVEVHDLYLKILLNPFYEYNKPITSTAFDAKVRKIGTKYF", "length": 133 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9CQP2-1", "protein_name": "Trafficking protein particle complex subunit 2", "gene_name": "Trappc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS", "length": 140 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VUZ1-1", "protein_name": "Probable trafficking protein particle complex subunit 2", "gene_name": "Trs20", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSTYYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLKSIDRFNQWFVSAFITASQIRFIIVHDNKNDEGIKNFFNEMYDTYIKNSMNAFYRINTPIKSPMFEKKSEIFGRKYLLS", "length": 139 }, "evidence": [ { "id": "F1SRI0", "url": "https://omabrowser.org/oma/group/F1SRI0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "pmid": "" }, { "name": "TRAPP complex", "id": "GO:0030008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030008", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "pmid": "" }, { "name": "endoplasmic reticulum to Golgi vesicle-mediated transport", "id": "GO:0006888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006888", "evidence": [ { "database": "UniProtKB", "id": "F1SRI0", "url": "https://www.uniprot.org/uniprotkb/F1SRI0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRI0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 140, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRI0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRI0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRI1-1", "uniprot_ac": "F1SRI1", "uniprot_id": "F1SRI1_PIG", "mass": { "chemical_mass": 22765.0, "monoisotopic_mass": 22765.0 }, "refseq": { "ac": "NP_001231676", "name": "ras-related protein Rab-9A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231676" }, "gene_names": [ { "name": "RAB9A", "type": "recommended", "evidence": [ { "id": "F1SRI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ] }, { "name": "RAB9A", "type": "synonym", "evidence": [ { "id": "NP_001231676", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231676" } ] } ], "protein_names": [ { "name": "small monomeric GTPase", "type": "recommended", "evidence": [ { "id": "F1SRI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI1/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.2", "type": "synonym", "evidence": [ { "id": "F1SRI1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI1/entry#names_and_taxonomy" } ] }, { "name": "ras-related protein Rab-9A", "type": "synonym", "evidence": [ { "id": "NP_001231676", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231676" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAB9A", "url": "https://www.uniprot.org/uniprotkb/F1SRI1", "locus": { "chromosome": "X", "start_pos": 10349387, "end_pos": 10293757, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012123", "url": "https://www.ensembl.org/id/ENSSSCG00000012123" } ] } } ], "crossref": [ { "id": "ENSSSCG00000012123", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012123", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04116", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04116", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513057", "url": "https://www.ncbi.nlm.nih.gov/gene/100513057", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513057", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513057", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WCAEQKV", "url": "https://omabrowser.org/oma/group/WCAEQKV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRI1", "url": "https://www.orthodb.org/?gene=F1SRI1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47981", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47981", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47981:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47981:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811440", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231676", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231676", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRI1-1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSAEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRADHLIQTDTVSLHRKPKPSSSCC", "length": 201, "header": "tr|F1SRI1-1|F1SRI1_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB9A PE=1 SV=1 CANONICAL=F1SRI1-1" }, "isoforms": [ { "isoform_ac": "F1SRI1-1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1/entry#F1SRI1-1", "sequence": { "sequence": "MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSAEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRADHLIQTDTVSLHRKPKPSSSCC", "length": 201, "header": "tr|F1SRI1-1|F1SRI1_PIG Isoform 1 of small monomeric GTPase OS=Sus scrofa OX=9823 GN=RAB9A PE=1 SV=1 CANONICAL=F1SRI1-1" }, "locus": { "chromosome": "X", "start_pos": 10348924, "end_pos": 10348322, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013262.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013262.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012906.2", "url": "https://www.ensembl.org/id/ENSSSCP00000012906.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513057", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513057", "resource": "KEGG Pathway" }, { "id": "R-SSC-6811440", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811440", "resource": "Reactome", "description": "Retrograde transport at the Trans-Golgi-Network" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [ { "uniprot_canonical_ac": "P51151-1", "protein_name": "Ras-related protein Rab-9A", "gene_name": "RAB9A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSDHLIQTDTVNLHRKPKPSSSCC", "length": 201 }, "evidence": [ { "id": "F1SRI1", "url": "https://omabrowser.org/oma/group/F1SRI1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9R0M6-1", "protein_name": "Ras-related protein Rab-9A", "gene_name": "Rab9a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILATEDRSEHLIQTDTVNLHRKPKPNSSCC", "length": 201 }, "evidence": [ { "id": "F1SRI1", "url": "https://omabrowser.org/oma/group/F1SRI1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VIW6-1", "protein_name": "small monomeric GTPase", "gene_name": "Rab9", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTNMRPPQKSKLLKVVILGDGGVGKSALLTRFVANRYEENNFHTIGVEFMNKDIVVDGERYTLQIWDTAGQERFRALRTPFYRGSDICLLCYALDDRDSLKGLGVWRNEFLNYADVDQDKFPFIVVGNKNDIPAQKRQVSSDAVQQWCAEQKVACHIETSSKAATNVTDAFVLGLRQWRHMECVAEAELRQHGDTIDLTRPIRLVQRRICCTGGGGGGGGVGQDADGDDAAMHSPGKKVFGQKRNASKAPATNYRL", "length": 256 }, "evidence": [ { "id": "F1SRI1", "url": "https://omabrowser.org/oma/group/F1SRI1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "GDP binding", "id": "GO:0019003", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019003", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "G protein activity", "id": "GO:0003925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003925", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 7, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "melanosome", "id": "GO:0042470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042470", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "phagocytic vesicle membrane", "id": "GO:0030670", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030670", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "late endosome", "id": "GO:0005770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005770", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "phagocytic vesicle", "id": "GO:0045335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045335", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "regulation of protein localization", "id": "GO:0032880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032880", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "receptor-mediated endocytosis", "id": "GO:0006898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006898", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "retrograde transport, endosome to Golgi", "id": "GO:0042147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042147", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "Rab protein signal transduction", "id": "GO:0032482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032482", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" }, { "name": "positive regulation of exocytosis", "id": "GO:0045921", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045921", "evidence": [ { "database": "UniProtKB", "id": "F1SRI1", "url": "https://www.uniprot.org/uniprotkb/F1SRI1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19669", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19669" } ] }, { "id": "R-SSC-6814671", "name": "Fusion of late-endosome derived vesicles at the TGN", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "trans-Golgi network membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-6814671", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6814671" } ] }, { "id": "R-SSC-8876191", "name": "RAB9 GEFs exchange GTP for GDP on RAB9", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, trans-Golgi network membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8876191", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876191" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRI3-1", "uniprot_ac": "F1SRI3", "uniprot_id": "F1SRI3_PIG", "mass": { "chemical_mass": 68746.0, "monoisotopic_mass": 68746.0 }, "refseq": {}, "gene_names": [ { "name": "EGFL6", "type": "recommended", "evidence": [ { "id": "F1SRI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" } ] } ], "protein_names": [ { "name": "EGF like domain multiple 6", "type": "synonym", "evidence": [ { "id": "F1SRI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRI3", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EGFL6", "url": "https://www.uniprot.org/uniprotkb/F1SRI3", "locus": { "chromosome": "X", "start_pos": 10283810, "end_pos": 10217924, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000012121", "url": "https://www.ensembl.org/id/ENSSSCG00000012121" } ] } } ], "crossref": [ { "id": "F1SRI3", "url": "https://alphafold.ebi.ac.uk/entry/F1SRI3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000012121", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000012121", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00054", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00054", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06263", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06263", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052235", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052235", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057138", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057138", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24050", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24050", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24050:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24050:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00629", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00629", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23301", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23301", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SRI3", "url": "https://www.uniprot.org/uniprotkb/F1SRI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRI3-1", "url": "https://www.uniprot.org/uniprotkb/F1SRI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGCCWRRVPARCARPAPPSLAHWPPRPWRSRSAPGWAPPASPQSPLKCRASSLPPRGAEAPSSLGQPRQPPPCAPVPRPSEGAQAEEREAAEGAPRPKMPLPWALALPLLLPWVAGGGGNAAGPRNHGLLALSLQPGVCRYGTTLACCYGWRRSSKGVCEATCEPGCKFGECVGPNKCRCFPGYTGKTCSQDVNECGVKPRPCQHRCVNTHGSYKCFCLSGHMLMPDATCSNSRTCAVTSCQYGCEDTEAGPRCLCPSPGLRLAPNGRACIDIDECTSDKAVCPYNRRCVNTFGSYYCKCHVGFELKYIRGRYDCVDVNECAANTHTCSLHATCLNILGSFKCKCKQGYKGSGLQCSVIPENAVKEFLIVPGSIRDRIKKLLAHKNGTKKKVFIKNVITEPMGTPTPKVGSQPFGSEESVSRDENHRGERKRSEETKKERPEEERRDEKALENHVEQEQSLRGDVFSDLNISVDCSFDHGVCDWKQDVEDDFDWNPADRDNAVGYYMAVPALAGQKKDIGRLKLLLPDLQPQSNLCLLFHYRLAGNKVGKLRVFVKNSNSALAWEKTRSADERWKMGKIQLYRGVGTPKSIIFEAERGKGRTGEIALDGVLLLSGFCPDGPLSVDN", "length": 627, "header": "tr|F1SRI3-1|F1SRI3_PIG Isoform 1 of EGF like domain multiple 6 OS=Sus scrofa OX=9823 GN=EGFL6 PE=3 SV=4 CANONICAL=F1SRI3-1" }, "isoforms": [ { "isoform_ac": "F1SRI3-1", "url": "https://www.uniprot.org/uniprotkb/F1SRI3/entry#F1SRI3-1", "sequence": { "sequence": "MRGCCWRRVPARCARPAPPSLAHWPPRPWRSRSAPGWAPPASPQSPLKCRASSLPPRGAEAPSSLGQPRQPPPCAPVPRPSEGAQAEEREAAEGAPRPKMPLPWALALPLLLPWVAGGGGNAAGPRNHGLLALSLQPGVCRYGTTLACCYGWRRSSKGVCEATCEPGCKFGECVGPNKCRCFPGYTGKTCSQDVNECGVKPRPCQHRCVNTHGSYKCFCLSGHMLMPDATCSNSRTCAVTSCQYGCEDTEAGPRCLCPSPGLRLAPNGRACIDIDECTSDKAVCPYNRRCVNTFGSYYCKCHVGFELKYIRGRYDCVDVNECAANTHTCSLHATCLNILGSFKCKCKQGYKGSGLQCSVIPENAVKEFLIVPGSIRDRIKKLLAHKNGTKKKVFIKNVITEPMGTPTPKVGSQPFGSEESVSRDENHRGERKRSEETKKERPEEERRDEKALENHVEQEQSLRGDVFSDLNISVDCSFDHGVCDWKQDVEDDFDWNPADRDNAVGYYMAVPALAGQKKDIGRLKLLLPDLQPQSNLCLLFHYRLAGNKVGKLRVFVKNSNSALAWEKTRSADERWKMGKIQLYRGVGTPKSIIFEAERGKGRTGEIALDGVLLLSGFCPDGPLSVDN", "length": 627, "header": "tr|F1SRI3-1|F1SRI3_PIG Isoform 1 of EGF like domain multiple 6 OS=Sus scrofa OX=9823 GN=EGFL6 PE=3 SV=4 CANONICAL=F1SRI3-1" }, "locus": { "chromosome": "X", "start_pos": 10283603, "end_pos": 10218123, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013260.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013260.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012904.4", "url": "https://www.ensembl.org/id/ENSSSCP00000012904.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRI3", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SRI3", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SRI3", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SRI3", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "F1SRI3", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SRI3", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRI3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 627, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRI3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRI3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 193, "end_pos": 232, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI3" }, { "id": "PS50060", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50060" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MAM", "eco_id": "ECO_0000259", "start_pos": 474, "end_pos": 620, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 387, "end_pos": 389 }, { "start_pos": 471, "end_pos": 473 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRI4-1", "uniprot_ac": "F1SRI4", "uniprot_id": "F1SRI4_PIG", "mass": { "chemical_mass": 317912.0, "monoisotopic_mass": 317912.0 }, "refseq": {}, "gene_names": [ { "name": "UTP20", "type": "recommended", "evidence": [ { "id": "F1SRI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" } ] } ], "protein_names": [ { "name": "UTP20 small subunit processome component", "type": "synonym", "evidence": [ { "id": "F1SRI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRI4", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UTP20", "url": "https://www.uniprot.org/uniprotkb/F1SRI4", "locus": { "chromosome": "5", "start_pos": 82813717, "end_pos": 82913155, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000869", "url": "https://www.ensembl.org/id/ENSSSCG00000000869" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000869", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000869", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011430", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011430", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057525", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057525", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR17695", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17695", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17695:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17695:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07539", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07539", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20416", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20416", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23099", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23099", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SRI4", "url": "https://www.uniprot.org/uniprotkb/F1SRI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SRI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTKPVSHKTENTYRFLTFAERLGNVNIDIIHRIDRTASYDEEVETYFFEGLLKWRELNLTEHFGKFYKEVIDKCQSFNQLVYHQNEIVQSLKTHLQIRNSYAYQPLLDLVVQLARDLQMDFYPHFQDFFLTITSILETQDTELLEWAFTSLSYLYKYLWRLMTKDMSNIYRMYSTLLAHKKLHIRNFAAESFTFLMRKVSDKNALFNLMFLDLDEHPGKVEGVGQLLFEMCKGVRNMFHSCTEKAVKLILQKLGPVTETEIQLPWILVGETLKNMVKSTALCIHKEHFGIFFECLQESLLDLHTKVTKTNCGESSEQIKRLLETYLILVKHGNGSKITKPDDVCKVLSQTLQVAHLSTSCRKTLLDVISALILGDNVSLPETLIKETIEKIFESGFERRLTLDFSEVMFAMKQFEQLFLPSFLLYIENCFLTDEAAVKDDALAILAKLILNKAAPPTAGSMAIEKYPLLFSRQTVGSYIRQKKTRSKGGKEQISVLDHLLSIIQLPPNNDTTYLSWSWAALVVLPHIRPLEKEKVIPLVTGFIESLFVTVDRGSFGKGNLFVLCQAVNTLLSLEESSELLHLVPVERVKNLVLAFPSEPSVLLLADLYYQRLSLCGCRGPLSEEALMELYPKLQANISTGISKIRLLTIRILNHFEVRLPELMEDDGLSERQSVFAVLRQAELVPATVNDYREKLLHLRKLRHDVVQTAVPDGPLQEVPLRYLLGMLYVNFSALWDPVTELISSHAHEMENKQFWKVYYEHLERAATHAEKELQNDTGQEEKAIGDARWEQTQEGHVGALYHEQFALKTNLQERLDHTNFRFLLWRALAKFPERVEPRSRELSPLFLRFINNEYYPADLQVAPTQDLRRKDKGLAAEEMEEEPAAGDDEELEEELEPQDEPSQKKKTRRAAAKQLIAHLQVFSKFSNPRALYLESKLYELYLQLLLHQDQTVQKITLDCIMTYKHPHILPYRENLQRLLEDRSFKEEIVHFSISEDNTVVKTAHRADLFPILMRILYGRMKNKTGSKTQGKSASGTRMSIVLRFLAGTQPEEIQIFLDLLFEPVKHFKDGECHSAVIQAVEDLDLSKVLPLGRQHGILNSLEIVLKNISHLISSYLPKILQILLCMTATASHILDQREKIQLRFINPLKNLRRLGIKMVTDIFLDWESYQFRTEEIDAVFHGAVWPQINRLGSESQYSPTPLLKLISIWSRNARYFPFLAKQKPGHPECDILTNVFAILSAKNLSDATASIVMEIADDLLSLPDFEPTETVFSLPVTGCIYAESGDESITIGGRLILPHVPAILQYLSKTTISAEKVKKKKNRAQVSKELGILSKISKFMKDKEQSSLLITLLLPFLHHGNVAQDTEVDILVTVQNLLQHCLEPTSFLRPLAKLFSVIKNKLSRQLLCTVFQTLSDFESGLKYITDVVKLNTFDQRHLDDINFDVRFSAFQTITAYVKEMQTVDVNYLIAVMHNCFYNMELGDMSLSDNASMCLMNIIKKLAALNVTEKEYREIIHRSLLEKLRKGLKSQTESVQQDYTTLLSCLIQTFPDQPEFKDLVQLTDCHDPEMDFFENMKHIQIHRRARALKKLAKQLMEGKIVLSSKSLQNYIMPYAMAPIFDEKMLKHENITIAATEVIGAICKHLSWPAYTYYLKHFIHVLQTGQINQKLGVSLLVIVLEAFHFDHKTLEEQVRKIQNEENGIEMVALPEREAMEVEHVDEDEKEDKCKTSSDDRGELEHPDAADCEGTAAKESECITKAVSFLPRNKEELERTIKNIQGTITGDILPRLHKCLASTTKREEEHKLIKSKVVNDEEVVRVPLAFAMVKLMQSLPREVMEANLPSILLKVCALLKNRAQEIRDIARSTLAKIIEDLGVHYLQYILKELQTTLVRGYQVHVLTFTVYMLLQGLTHKLQVGNLDSCLDIMIEIFNHELFGAIAEEKEVKQILSKVMEARRSKSYDSYEILGKFVGKDQVTKLILPLKEILQNTTSLKLARKVHETLRRIIAGLLVNQEMTAESILLLCYGLVSENLPLLTEKEKNPAAPAPDPRLPPQSCLLLPPTPVRGGQKAVVSKKTNMHIFIESGLRLLHLSLKTSKVKSSSEHVLEMLDPFVSLLIDCLGAMDVKVITGALQCLIWVLRFPLPSIETKAEQLTKHLFLLLKDYAKLGAARGQNFHLVVNCFKCVTILVKKVKSYQITEKQLQVLLAYAEEDMYDISRQATAFGLLKAILSRKLLVPEIDDVMRKVSKLAISAQSEPVRVQCRQVFLKYILDYPLGDKLRPNLEFMLAQLNYEHETGRESALEMIAYLFDTFPQGLLHENCGMFFIPLCLMMVNDDSASCKKMASMAIKSLLSKISLEKKDWLFSMVTTWFGAKKSLNRQLAALICGLFVESEGVTFERRLGTVLPVIEKEIDPENFTDIMEETEEKAADRLLFSFLTLISKLIKECNIIQFTKPSETLSEIWSHVHSHLRHPHNWVWLTAAQVFGLLFASCQPEELIRKRNVKKAKKKLSEPVAIRFLTNDLDQKMKSISLASCHQLHSKFLDQSLGEQVVKNLLFVAKVLYLLEPGSGDKQGDIKDDVEEQEILGDGMTREDESTWPADEKEELGKPATLLWLIQKLTRIAKLEAAYSPRNPLKRTCIFKFLGAIAMDLGMDKVKPYLPVIIAPLFRELNSTYSDQDPSLKNLSQEIIEILKKLVGLESFSLAFASVQKQANEKRALRKKRKALEFVTNPDIAAKKKLKKHKNKSEAKKRKIEFLRPGYKAKRQKSHSLKNLAMVE", "length": 2779, "header": "tr|F1SRI4-1|F1SRI4_PIG Isoform 1 of UTP20 small subunit processome component OS=Sus scrofa OX=9823 GN=UTP20 PE=4 SV=3 CANONICAL=F1SRI4-1" }, "isoforms": [ { "isoform_ac": "F1SRI4-1", "url": "https://www.uniprot.org/uniprotkb/F1SRI4/entry#F1SRI4-1", "sequence": { "sequence": "MKTKPVSHKTENTYRFLTFAERLGNVNIDIIHRIDRTASYDEEVETYFFEGLLKWRELNLTEHFGKFYKEVIDKCQSFNQLVYHQNEIVQSLKTHLQIRNSYAYQPLLDLVVQLARDLQMDFYPHFQDFFLTITSILETQDTELLEWAFTSLSYLYKYLWRLMTKDMSNIYRMYSTLLAHKKLHIRNFAAESFTFLMRKVSDKNALFNLMFLDLDEHPGKVEGVGQLLFEMCKGVRNMFHSCTEKAVKLILQKLGPVTETEIQLPWILVGETLKNMVKSTALCIHKEHFGIFFECLQESLLDLHTKVTKTNCGESSEQIKRLLETYLILVKHGNGSKITKPDDVCKVLSQTLQVAHLSTSCRKTLLDVISALILGDNVSLPETLIKETIEKIFESGFERRLTLDFSEVMFAMKQFEQLFLPSFLLYIENCFLTDEAAVKDDALAILAKLILNKAAPPTAGSMAIEKYPLLFSRQTVGSYIRQKKTRSKGGKEQISVLDHLLSIIQLPPNNDTTYLSWSWAALVVLPHIRPLEKEKVIPLVTGFIESLFVTVDRGSFGKGNLFVLCQAVNTLLSLEESSELLHLVPVERVKNLVLAFPSEPSVLLLADLYYQRLSLCGCRGPLSEEALMELYPKLQANISTGISKIRLLTIRILNHFEVRLPELMEDDGLSERQSVFAVLRQAELVPATVNDYREKLLHLRKLRHDVVQTAVPDGPLQEVPLRYLLGMLYVNFSALWDPVTELISSHAHEMENKQFWKVYYEHLERAATHAEKELQNDTGQEEKAIGDARWEQTQEGHVGALYHEQFALKTNLQERLDHTNFRFLLWRALAKFPERVEPRSRELSPLFLRFINNEYYPADLQVAPTQDLRRKDKGLAAEEMEEEPAAGDDEELEEELEPQDEPSQKKKTRRAAAKQLIAHLQVFSKFSNPRALYLESKLYELYLQLLLHQDQTVQKITLDCIMTYKHPHILPYRENLQRLLEDRSFKEEIVHFSISEDNTVVKTAHRADLFPILMRILYGRMKNKTGSKTQGKSASGTRMSIVLRFLAGTQPEEIQIFLDLLFEPVKHFKDGECHSAVIQAVEDLDLSKVLPLGRQHGILNSLEIVLKNISHLISSYLPKILQILLCMTATASHILDQREKIQLRFINPLKNLRRLGIKMVTDIFLDWESYQFRTEEIDAVFHGAVWPQINRLGSESQYSPTPLLKLISIWSRNARYFPFLAKQKPGHPECDILTNVFAILSAKNLSDATASIVMEIADDLLSLPDFEPTETVFSLPVTGCIYAESGDESITIGGRLILPHVPAILQYLSKTTISAEKVKKKKNRAQVSKELGILSKISKFMKDKEQSSLLITLLLPFLHHGNVAQDTEVDILVTVQNLLQHCLEPTSFLRPLAKLFSVIKNKLSRQLLCTVFQTLSDFESGLKYITDVVKLNTFDQRHLDDINFDVRFSAFQTITAYVKEMQTVDVNYLIAVMHNCFYNMELGDMSLSDNASMCLMNIIKKLAALNVTEKEYREIIHRSLLEKLRKGLKSQTESVQQDYTTLLSCLIQTFPDQPEFKDLVQLTDCHDPEMDFFENMKHIQIHRRARALKKLAKQLMEGKIVLSSKSLQNYIMPYAMAPIFDEKMLKHENITIAATEVIGAICKHLSWPAYTYYLKHFIHVLQTGQINQKLGVSLLVIVLEAFHFDHKTLEEQVRKIQNEENGIEMVALPEREAMEVEHVDEDEKEDKCKTSSDDRGELEHPDAADCEGTAAKESECITKAVSFLPRNKEELERTIKNIQGTITGDILPRLHKCLASTTKREEEHKLIKSKVVNDEEVVRVPLAFAMVKLMQSLPREVMEANLPSILLKVCALLKNRAQEIRDIARSTLAKIIEDLGVHYLQYILKELQTTLVRGYQVHVLTFTVYMLLQGLTHKLQVGNLDSCLDIMIEIFNHELFGAIAEEKEVKQILSKVMEARRSKSYDSYEILGKFVGKDQVTKLILPLKEILQNTTSLKLARKVHETLRRIIAGLLVNQEMTAESILLLCYGLVSENLPLLTEKEKNPAAPAPDPRLPPQSCLLLPPTPVRGGQKAVVSKKTNMHIFIESGLRLLHLSLKTSKVKSSSEHVLEMLDPFVSLLIDCLGAMDVKVITGALQCLIWVLRFPLPSIETKAEQLTKHLFLLLKDYAKLGAARGQNFHLVVNCFKCVTILVKKVKSYQITEKQLQVLLAYAEEDMYDISRQATAFGLLKAILSRKLLVPEIDDVMRKVSKLAISAQSEPVRVQCRQVFLKYILDYPLGDKLRPNLEFMLAQLNYEHETGRESALEMIAYLFDTFPQGLLHENCGMFFIPLCLMMVNDDSASCKKMASMAIKSLLSKISLEKKDWLFSMVTTWFGAKKSLNRQLAALICGLFVESEGVTFERRLGTVLPVIEKEIDPENFTDIMEETEEKAADRLLFSFLTLISKLIKECNIIQFTKPSETLSEIWSHVHSHLRHPHNWVWLTAAQVFGLLFASCQPEELIRKRNVKKAKKKLSEPVAIRFLTNDLDQKMKSISLASCHQLHSKFLDQSLGEQVVKNLLFVAKVLYLLEPGSGDKQGDIKDDVEEQEILGDGMTREDESTWPADEKEELGKPATLLWLIQKLTRIAKLEAAYSPRNPLKRTCIFKFLGAIAMDLGMDKVKPYLPVIIAPLFRELNSTYSDQDPSLKNLSQEIIEILKKLVGLESFSLAFASVQKQANEKRALRKKRKALEFVTNPDIAAKKKLKKHKNKSEAKKRKIEFLRPGYKAKRQKSHSLKNLAMVE", "length": 2779, "header": "tr|F1SRI4-1|F1SRI4_PIG Isoform 1 of UTP20 small subunit processome component OS=Sus scrofa OX=9823 GN=UTP20 PE=4 SV=3 CANONICAL=F1SRI4-1" }, "locus": { "chromosome": "5", "start_pos": 82912995, "end_pos": 82813883, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000949.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000949.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000929.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000929.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 458, "start_aa": "Thr", "end_pos": 458, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr458", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRI4", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SRI4", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" } ], "pmid": "" }, { "name": "90S preribosome", "id": "GO:0030686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030686", "evidence": [ { "database": "UniProtKB", "id": "F1SRI4", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F1SRI4", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "rRNA processing", "id": "GO:0006364", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006364", "evidence": [ { "database": "UniProtKB", "id": "F1SRI4", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" } ], "pmid": "" }, { "name": "ribosomal small subunit biogenesis", "id": "GO:0042274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042274", "evidence": [ { "database": "UniProtKB", "id": "F1SRI4", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1023, "end_pos": 1025, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1108, "end_pos": 1110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1244, "end_pos": 1246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1490, "end_pos": 1492, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1506, "end_pos": 1508, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1629, "end_pos": 1631, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1989, "end_pos": 1991, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2417, "end_pos": 2419, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2673, "end_pos": 2675, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2685, "end_pos": 2687, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2746, "end_pos": 2748, "annotation": "n_glycosylation_sequon" }, { "start_pos": 334, "end_pos": 336, "annotation": "n_glycosylation_sequon" }, { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" }, { "start_pos": 510, "end_pos": 512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 59, "end_pos": 61, "annotation": "n_glycosylation_sequon" }, { "start_pos": 637, "end_pos": 639, "annotation": "n_glycosylation_sequon" }, { "start_pos": 731, "end_pos": 733, "annotation": "n_glycosylation_sequon" }, { "start_pos": 776, "end_pos": 778, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" }, { "id": "PF20416", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20416" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "U3 small nucleolar RNA-associated protein 20", "eco_id": "ECO_0000259", "start_pos": 1813, "end_pos": 2029, "start_aa": "Asn", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" }, { "id": "PF23099", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23099" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "U3 small nucleolar RNA-associated protein 20 C-terminal", "eco_id": "ECO_0000259", "start_pos": 2380, "end_pos": 2756, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRI4" }, { "id": "PF07539", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07539" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "U3 small nucleolar RNA-associated protein 20 N-terminal", "eco_id": "ECO_0000259", "start_pos": 911, "end_pos": 1531, "start_aa": "Ala", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 458 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1023, "end_pos": 1025 }, { "start_pos": 1108, "end_pos": 1110 }, { "start_pos": 1244, "end_pos": 1246 }, { "start_pos": 1490, "end_pos": 1492 }, { "start_pos": 1506, "end_pos": 1508 }, { "start_pos": 1629, "end_pos": 1631 }, { "start_pos": 1989, "end_pos": 1991 }, { "start_pos": 2417, "end_pos": 2419 }, { "start_pos": 2673, "end_pos": 2675 }, { "start_pos": 2685, "end_pos": 2687 }, { "start_pos": 2746, "end_pos": 2748 }, { "start_pos": 334, "end_pos": 336 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 510, "end_pos": 512 }, { "start_pos": 59, "end_pos": 61 }, { "start_pos": 637, "end_pos": 639 }, { "start_pos": 731, "end_pos": 733 }, { "start_pos": 776, "end_pos": 778 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRJ6-1", "uniprot_ac": "F1SRJ6", "uniprot_id": "F1SRJ6_PIG", "mass": { "chemical_mass": 18703.0, "monoisotopic_mass": 18703.0 }, "refseq": { "ac": "NP_001231369", "name": "pro-MCH precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231369" }, "gene_names": [ { "name": "PMCH", "type": "recommended", "evidence": [ { "id": "F1SRJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ] }, { "name": "PMCH", "type": "synonym", "evidence": [ { "id": "NP_001231369", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231369" } ] } ], "protein_names": [ { "name": "Pro-MCH", "type": "recommended", "evidence": [ { "id": "F1SRJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6/entry#names_and_taxonomy" } ] }, { "name": "melanin-concentrating hormone", "type": "synonym", "evidence": [ { "id": "NP_001231369", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231369" } ] }, { "name": "pro-MCH precursor", "type": "synonym", "evidence": [ { "id": "NP_001231369", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231369" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PMCH", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6", "locus": { "chromosome": "5", "start_pos": 82020266, "end_pos": 82018915, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000858", "url": "https://www.ensembl.org/id/ENSSSCG00000000858" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000858", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000858", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "396962", "url": "https://www.ncbi.nlm.nih.gov/gene/396962", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005456", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005456", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:396962", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396962", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NTFRMGK", "url": "https://omabrowser.org/oma/group/NTFRMGK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRJ6", "url": "https://www.orthodb.org/?gene=F1SRJ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12091", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12091", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12091:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12091:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05824", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05824", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-375276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231369", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231369", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRJ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKMSFSSYILILTFSLLSQGVLLSASKSIRNLEDDMVFKTLRLGKAFQKEDSAEKSLVVPSLEQYKNDESSFMNDEENKNSKNAGSKHNFLNHGLPLNLAIKPYLALKGSVAFPAENEVQNTESTQEKREIGDEENSAKFPIGRRDFDMLRCMLGRVYRPCWQV", "length": 165, "header": "tr|F1SRJ6-1|F1SRJ6_PIG Isoform 1 of Pro-MCH OS=Sus scrofa OX=9823 GN=PMCH PE=4 SV=2 CANONICAL=F1SRJ6-1" }, "isoforms": [ { "isoform_ac": "F1SRJ6-1", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6/entry#F1SRJ6-1", "sequence": { "sequence": "MAKMSFSSYILILTFSLLSQGVLLSASKSIRNLEDDMVFKTLRLGKAFQKEDSAEKSLVVPSLEQYKNDESSFMNDEENKNSKNAGSKHNFLNHGLPLNLAIKPYLALKGSVAFPAENEVQNTESTQEKREIGDEENSAKFPIGRRDFDMLRCMLGRVYRPCWQV", "length": 165, "header": "tr|F1SRJ6-1|F1SRJ6_PIG Isoform 1 of Pro-MCH OS=Sus scrofa OX=9823 GN=PMCH PE=4 SV=2 CANONICAL=F1SRJ6-1" }, "locus": { "chromosome": "5", "start_pos": 82020074, "end_pos": 82018928, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000937.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000937.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000917.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000917.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:396962", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:396962", "resource": "KEGG Pathway" }, { "id": "R-SSC-375276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-375276", "resource": "Reactome", "description": "Peptide ligand-binding receptors" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" } ], "orthologs": [ { "uniprot_canonical_ac": "P14200-1", "protein_name": "Pro-MCH", "gene_name": "Pmch", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKMSLSSYMLMLAFSLFSHGILLSASKSIRNVEDDIVFNTFRMGKAFQKEDTAERSVVAPSLEGYKNDESGFMKDDDDKTTKNTGSKQNLVTHGLPLSLAVKPYLALKGPAVFPAENGVQNTESTQEKREIGDEENSAKFPIGRRDFDMLRCMLGRVYRPCWQV", "length": 165 }, "evidence": [ { "id": "F1SRJ6", "url": "https://omabrowser.org/oma/group/F1SRJ6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P20382-1", "protein_name": "Pro-MCH", "gene_name": "PMCH", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKMNLSSYILILTFSLFSQGILLSASKSIRNLDDDMVFNTFRLGKGFQKEDTAEKSVIAPSLEQYKNDESSFMNEEENKVSKNTGSKHNFLNHGLPLNLAIKPYLALKGSVAFPAENGVQNTESTQEKREIGDEENSAKFPIGRRDFDMLRCMLGRVYRPCWQV", "length": 165 }, "evidence": [ { "id": "F1SRJ6", "url": "https://omabrowser.org/oma/group/F1SRJ6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P56942-1", "protein_name": "Pro-MCH", "gene_name": "Pmch", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKMTLSSYMLMLAFSLFSQGILLSASKSIRNLEDDIVFNTFRMGKAFQKEDTAERSVVAPSLEQYKNDESGFMNDDDNKNSKNTGSKQNLVTHGLPLSLAVKPYLALKGSVAFPAENGVQNAESTQEKREIGDEENSAKFPIGRRDFDMLRCMLGRVYRPCWQV", "length": 165 }, "evidence": [ { "id": "F1SRJ6", "url": "https://omabrowser.org/oma/group/F1SRJ6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "chemical synaptic transmission", "id": "GO:0007268", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007268", "evidence": [ { "database": "UniProtKB", "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ], "pmid": "" }, { "name": "feeding behavior", "id": "GO:0007631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007631", "evidence": [ { "database": "UniProtKB", "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ], "pmid": "" }, { "name": "negative regulation of synaptic transmission, dopaminergic", "id": "GO:0032227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032227", "evidence": [ { "database": "UniProtKB", "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "melanin-concentrating hormone activity", "id": "GO:0030354", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030354", "evidence": [ { "database": "UniProtKB", "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ], "pmid": "" }, { "name": "type 1 melanin-concentrating hormone receptor binding", "id": "GO:0031777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031777", "evidence": [ { "database": "UniProtKB", "id": "F1SRJ6", "url": "https://www.uniprot.org/uniprotkb/F1SRJ6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRK1-1", "uniprot_ac": "F1SRK1", "uniprot_id": "F1SRK1_PIG", "mass": { "chemical_mass": 275972.0, "monoisotopic_mass": 275972.0 }, "refseq": {}, "gene_names": [ { "name": "STAB2", "type": "recommended", "evidence": [ { "id": "F1SRK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ] } ], "protein_names": [ { "name": "Stabilin-2", "type": "recommended", "evidence": [ { "id": "F1SRK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK1/entry#names_and_taxonomy" } ] }, { "name": "Fasciclin, EGF-like, laminin-type EGF-like and link domain-containing scavenger receptor 2", "type": "synonym", "evidence": [ { "id": "F1SRK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STAB2", "url": "https://www.uniprot.org/uniprotkb/F1SRK1", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000000854", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000854", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000538", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000538", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024731", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024731", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24038", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24038", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24038:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24038:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00193", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00193", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02469", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02469", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12947", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12947", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24887", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24887", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2142845", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2142845", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2160916", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2160916", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3000497", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000497", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRK1-1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "AMLQNLMLFFLGLVAQNLCSLPETTEQAKRCDKKAVLIMRTECQPCSLNFGTKCPDGYTKITNGTVGVRDCRYPFEVRTYTLSLPGCRHICRKDYLQPQCCPGHWGPDCMECPGGAHSPCSGRGSCAEGMEGNGSCSCQEGFGGTACENCADDNVFGPSCSAACPCVHGVCNSGIHGDGTCECFSGYTGPNCDKPIPACAALFCPENSRCSPSSKDETTLECKCLPNYKSDGKSCEPINPCSQNICHPHAWCTYLGPNRHSCTCQEGYRGDGQVCFPVDPCQVNFGNCPTDSSVCRYDGPGQSHCECREHYHNFVPGVGCSMTDICESHNPCHRDARCTTIAPGQTKCTCRKGYIGDGSRCYGNIMERLRELNTEPGGKWQGRLTSFISLLDKAYAWPLSNLGPFTLLLPTDKGLKGFNVKELLKDNEAARYFVKLHIIAGQMNTEQMTTLQMKTFYTLTGKPGEIFNGDKDNQVKLKLYGGKKKVNIIQGNIIASNGLLHILDRAMDKVAPTFESNNEQTIMTMLQPRYSKFRSLLEETNMGHALDEDGVGGPYTIFVPSNEALNNMKDGALDYLLSSEGSRKLLELVRYHIVPFTQLEVATLISTPHIRSMANQVIRFNTTDNGQILANGVAMEETEVAAKNGRIYTLTGVLIPPSITPVLPHRCDEMKREMKLGTCVSCSLVYWSKCPADSEPMTLFTHKCVYTGRIRSLKNGCARYCNATVKIPKCCEGFYGPDCIQCPGGFLNPCSGNGQCADGLDGNGTCICQDGFRGSQCQFCADPNKYGPQCDKRCLCIFGTCDNRIDSDGACLPGTCREGSAGRFCHKHTSACGPYMEFCHIHATCEYSNGTASCVCKAGYEGDGSLCSETDPCSGLTPGGCSRNAECIKTGRGTHTCVCHQGWTGDGRDCSAINTCLLPRAGGCHHNATCLYVGPGQNECECKKGFRGNGIDCELITSCLEQTGRCHPLATCQFTSGVWSCVCPEGYEGDGLLCYGNAAVELSFLSAAAVFNQWINSASLQPLLSATSNLTVLVPSRQAIEDLDQEEKAFWLTKSNIPALIKYHTLLGTYGVADLQALSPSDMLATSLQGSFLHLAKVNGNITIEGASVIDGDNAATNGVIHIINKVLLPQRGLTGSLPNLLTRLDQMPDYSIFRGYIIQYNLASTIEAADAYTVFAPNNDAIESYIREKKVTTLEEDVLRYHVVLEEKLLKNDLHTGMHRETMLGFSYLLGFFLHNDQLYVNEAPINYTNAATDKGVIHGLGKVLEIQKNRCDVNDTTIVRGKCGKCPQQPICPFGTKPLGDETRRCLYTIYFMGKRSLFIGCQPKCVKTVITKECCAGYFGPQCQPCPGSAEGICFGNGICLDGANGTGVCECGGGFGGTACETCVEGKYGAHCDQVCTCVHGRCNQGPSGDGSCDCDVGWRGVKCDSEITKDNCNGTCHTSANCLLNPDGTASCRCAAGFQGNGTVCTAINACEISNGGCSTKAICKRTTPGSRECVCKAGYTGDGIVCLEINPCLENNGGCHRHAECTQTGPNQAVCNCLAKYTGDGKVCTLIDVCLTENGGCSKFAFCNHNEQDGRTCTCKPDYIGDGFTCRGNIHQELPKNPQTSQYYFQLQEHSIHDLLGPGPFTVLAPSSAAFDAEPQIKNWDKQGLMPQVLRYHVIACHQLLLENLKSTPNATSLQGESLTISVSQGTVFINNKAKIISSDIISTNGIIHIIDKLLSPQNLLITPQDASGRILQNLTTVAVNHGYFKFSNLLQEMGLLSVITDPIHTPVTLFWPSDQALQSLPPEQQGFLFNQDNKDKLKEYLKFHVIRDAKVLAVDLPRFATWKTLQGSELSVKCGAGSDIGELFLNGQTCRIVQRELLFDLGVAYGIDCLLIDPTLGGRCDTFTTFNVSGNCGSCISTPSCPRWTKPKGQKQKCLYNLPFKRNVEGCKQQCTLVIQLPRCCRGYFWPDCQACPGGPDTPCNNRGVCLDQYSPMGQCKCNAGFTGTACELWPGRFGPDCQPCGCSDHGQCDDGITGSGQCVCETGWTGRFCDTQTAVPPVCTPPCSAHATCTENSTCECNLNYEGDGITCTVVDFCKQNNGGCAKVATCSQKGTKVSCSCQKGYQGDGHSCTEIDPCADGLNGGCHEHATCRMTGPGKRKCECKSHYVGDGLDCEPEQLPIDRCLQDNGQCHADADCADLHFQDTTIGVFHLRSPLGQYKLTFDKAKEACAKEAATVATYNQLAYAQKAKYHLCSAGWLDGGRVGYPTSYASQNCGSGVVGIVDYGPRNNKSEMWDVFCYRMKDVNCTCKAGYVGDGFSCSGNLLQVLMSLPSLTDFLGEVLAYSNSSARGRAFLKHLTDLSLRSTLFVPQNSGLGENETLSGRDIEHHLSNVSIFFYDDLVNGTILHTRLGSQLLITSSQDQHQLETRFVDGRAILQWDIFASNGVIHVISRPLKAPPTPVTLSHSGLGTGMFFAVILVIGAIASAAYSYFRLNKRRVGFQHFESEEDIDVAALGKQQPDNISNPMYESTTAAALGPSHDPFVDAETQQLASSDPLGAL", "length": 2550, "header": "tr|F1SRK1-1|F1SRK1_PIG Isoform 1 of Stabilin-2 OS=Sus scrofa OX=9823 GN=STAB2 PE=4 SV=4 CANONICAL=F1SRK1-1" }, "isoforms": [ { "isoform_ac": "F1SRK1-1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1/entry#F1SRK1-1", "sequence": { "sequence": "AMLQNLMLFFLGLVAQNLCSLPETTEQAKRCDKKAVLIMRTECQPCSLNFGTKCPDGYTKITNGTVGVRDCRYPFEVRTYTLSLPGCRHICRKDYLQPQCCPGHWGPDCMECPGGAHSPCSGRGSCAEGMEGNGSCSCQEGFGGTACENCADDNVFGPSCSAACPCVHGVCNSGIHGDGTCECFSGYTGPNCDKPIPACAALFCPENSRCSPSSKDETTLECKCLPNYKSDGKSCEPINPCSQNICHPHAWCTYLGPNRHSCTCQEGYRGDGQVCFPVDPCQVNFGNCPTDSSVCRYDGPGQSHCECREHYHNFVPGVGCSMTDICESHNPCHRDARCTTIAPGQTKCTCRKGYIGDGSRCYGNIMERLRELNTEPGGKWQGRLTSFISLLDKAYAWPLSNLGPFTLLLPTDKGLKGFNVKELLKDNEAARYFVKLHIIAGQMNTEQMTTLQMKTFYTLTGKPGEIFNGDKDNQVKLKLYGGKKKVNIIQGNIIASNGLLHILDRAMDKVAPTFESNNEQTIMTMLQPRYSKFRSLLEETNMGHALDEDGVGGPYTIFVPSNEALNNMKDGALDYLLSSEGSRKLLELVRYHIVPFTQLEVATLISTPHIRSMANQVIRFNTTDNGQILANGVAMEETEVAAKNGRIYTLTGVLIPPSITPVLPHRCDEMKREMKLGTCVSCSLVYWSKCPADSEPMTLFTHKCVYTGRIRSLKNGCARYCNATVKIPKCCEGFYGPDCIQCPGGFLNPCSGNGQCADGLDGNGTCICQDGFRGSQCQFCADPNKYGPQCDKRCLCIFGTCDNRIDSDGACLPGTCREGSAGRFCHKHTSACGPYMEFCHIHATCEYSNGTASCVCKAGYEGDGSLCSETDPCSGLTPGGCSRNAECIKTGRGTHTCVCHQGWTGDGRDCSAINTCLLPRAGGCHHNATCLYVGPGQNECECKKGFRGNGIDCELITSCLEQTGRCHPLATCQFTSGVWSCVCPEGYEGDGLLCYGNAAVELSFLSAAAVFNQWINSASLQPLLSATSNLTVLVPSRQAIEDLDQEEKAFWLTKSNIPALIKYHTLLGTYGVADLQALSPSDMLATSLQGSFLHLAKVNGNITIEGASVIDGDNAATNGVIHIINKVLLPQRGLTGSLPNLLTRLDQMPDYSIFRGYIIQYNLASTIEAADAYTVFAPNNDAIESYIREKKVTTLEEDVLRYHVVLEEKLLKNDLHTGMHRETMLGFSYLLGFFLHNDQLYVNEAPINYTNAATDKGVIHGLGKVLEIQKNRCDVNDTTIVRGKCGKCPQQPICPFGTKPLGDETRRCLYTIYFMGKRSLFIGCQPKCVKTVITKECCAGYFGPQCQPCPGSAEGICFGNGICLDGANGTGVCECGGGFGGTACETCVEGKYGAHCDQVCTCVHGRCNQGPSGDGSCDCDVGWRGVKCDSEITKDNCNGTCHTSANCLLNPDGTASCRCAAGFQGNGTVCTAINACEISNGGCSTKAICKRTTPGSRECVCKAGYTGDGIVCLEINPCLENNGGCHRHAECTQTGPNQAVCNCLAKYTGDGKVCTLIDVCLTENGGCSKFAFCNHNEQDGRTCTCKPDYIGDGFTCRGNIHQELPKNPQTSQYYFQLQEHSIHDLLGPGPFTVLAPSSAAFDAEPQIKNWDKQGLMPQVLRYHVIACHQLLLENLKSTPNATSLQGESLTISVSQGTVFINNKAKIISSDIISTNGIIHIIDKLLSPQNLLITPQDASGRILQNLTTVAVNHGYFKFSNLLQEMGLLSVITDPIHTPVTLFWPSDQALQSLPPEQQGFLFNQDNKDKLKEYLKFHVIRDAKVLAVDLPRFATWKTLQGSELSVKCGAGSDIGELFLNGQTCRIVQRELLFDLGVAYGIDCLLIDPTLGGRCDTFTTFNVSGNCGSCISTPSCPRWTKPKGQKQKCLYNLPFKRNVEGCKQQCTLVIQLPRCCRGYFWPDCQACPGGPDTPCNNRGVCLDQYSPMGQCKCNAGFTGTACELWPGRFGPDCQPCGCSDHGQCDDGITGSGQCVCETGWTGRFCDTQTAVPPVCTPPCSAHATCTENSTCECNLNYEGDGITCTVVDFCKQNNGGCAKVATCSQKGTKVSCSCQKGYQGDGHSCTEIDPCADGLNGGCHEHATCRMTGPGKRKCECKSHYVGDGLDCEPEQLPIDRCLQDNGQCHADADCADLHFQDTTIGVFHLRSPLGQYKLTFDKAKEACAKEAATVATYNQLAYAQKAKYHLCSAGWLDGGRVGYPTSYASQNCGSGVVGIVDYGPRNNKSEMWDVFCYRMKDVNCTCKAGYVGDGFSCSGNLLQVLMSLPSLTDFLGEVLAYSNSSARGRAFLKHLTDLSLRSTLFVPQNSGLGENETLSGRDIEHHLSNVSIFFYDDLVNGTILHTRLGSQLLITSSQDQHQLETRFVDGRAILQWDIFASNGVIHVISRPLKAPPTPVTLSHSGLGTGMFFAVILVIGAIASAAYSYFRLNKRRVGFQHFESEEDIDVAALGKQQPDNISNPMYESTTAAALGPSHDPFVDAETQQLASSDPLGAL", "length": 2550, "header": "tr|F1SRK1-1|F1SRK1_PIG Isoform 1 of Stabilin-2 OS=Sus scrofa OX=9823 GN=STAB2 PE=4 SV=4 CANONICAL=F1SRK1-1" }, "locus": { "chromosome": "5", "start_pos": 80858407, "end_pos": 80694693, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000931.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000931.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000911.4", "url": "https://www.ensembl.org/id/ENSSSCP00000000911.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2450, "start_aa": "Thr", "end_pos": 2450, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2450", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2142845", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2142845", "resource": "Reactome", "description": "Hyaluronan metabolism" }, { "id": "R-SSC-2160916", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2160916", "resource": "Reactome", "description": "Hyaluronan degradation" }, { "id": "R-SSC-3000497", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3000497", "resource": "Reactome", "description": "Scavenging by Class H Receptors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "pmid": "" }, { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "pmid": "" }, { "name": "low-density lipoprotein particle receptor activity", "id": "GO:0005041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005041", "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "pmid": "" }, { "name": "low-density lipoprotein particle binding", "id": "GO:0030169", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030169", "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "pmid": "" }, { "name": "hyaluronic acid binding", "id": "GO:0005540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005540", "evidence": [ { "database": "UniProtKB", "id": "F1SRK1", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1029, "end_pos": 1031, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1101, "end_pos": 1103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1248, "end_pos": 1250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1276, "end_pos": 1278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1368, "end_pos": 1370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1438, "end_pos": 1440, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1466, "end_pos": 1468, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1680, "end_pos": 1682, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1744, "end_pos": 1746, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1898, "end_pos": 1900, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2064, "end_pos": 2066, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2280, "end_pos": 2282, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2296, "end_pos": 2298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2336, "end_pos": 2338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2368, "end_pos": 2370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2382, "end_pos": 2384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2393, "end_pos": 2395, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2512, "end_pos": 2514, "annotation": "n_glycosylation_sequon" }, { "start_pos": 621, "end_pos": 623, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" }, { "start_pos": 722, "end_pos": 724, "annotation": "n_glycosylation_sequon" }, { "start_pos": 763, "end_pos": 765, "annotation": "n_glycosylation_sequon" }, { "start_pos": 849, "end_pos": 851, "annotation": "n_glycosylation_sequon" }, { "start_pos": 927, "end_pos": 929, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" }, { "id": "PS50026", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50026" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 108, "end_pos": 148, "start_aa": "Asp", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" }, { "id": "PS50213", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50213" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAS1", "eco_id": "ECO_0000259", "start_pos": 371, "end_pos": 507, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRK1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK1" }, { "id": "PS50963", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50963" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Link", "eco_id": "ECO_0000259", "start_pos": 2198, "end_pos": 2291, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 2450 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1029, "end_pos": 1031 }, { "start_pos": 1101, "end_pos": 1103 }, { "start_pos": 1248, "end_pos": 1250 }, { "start_pos": 1276, "end_pos": 1278 }, { "start_pos": 133, "end_pos": 135 }, { "start_pos": 1368, "end_pos": 1370 }, { "start_pos": 1438, "end_pos": 1440 }, { "start_pos": 1466, "end_pos": 1468 }, { "start_pos": 1680, "end_pos": 1682 }, { "start_pos": 1744, "end_pos": 1746 }, { "start_pos": 1898, "end_pos": 1900 }, { "start_pos": 2064, "end_pos": 2066 }, { "start_pos": 2280, "end_pos": 2282 }, { "start_pos": 2296, "end_pos": 2298 }, { "start_pos": 2336, "end_pos": 2338 }, { "start_pos": 2368, "end_pos": 2370 }, { "start_pos": 2382, "end_pos": 2384 }, { "start_pos": 2393, "end_pos": 2395 }, { "start_pos": 2512, "end_pos": 2514 }, { "start_pos": 621, "end_pos": 623 }, { "start_pos": 63, "end_pos": 65 }, { "start_pos": 722, "end_pos": 724 }, { "start_pos": 763, "end_pos": 765 }, { "start_pos": 849, "end_pos": 851 }, { "start_pos": 927, "end_pos": 929 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRK8-1", "uniprot_ac": "F1SRK8", "uniprot_id": "F1SRK8_PIG", "mass": { "chemical_mass": 45525.0, "monoisotopic_mass": 45525.0 }, "refseq": { "ac": "XP_020948293", "name": "G/T mismatch-specific thymine DNA glycosylase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948293" }, "gene_names": [ { "name": "TDG", "type": "recommended", "evidence": [ { "id": "F1SRK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ] }, { "name": "TDG", "type": "synonym", "evidence": [ { "id": "XP_020948293", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948293" } ] } ], "protein_names": [ { "name": "G/T mismatch-specific thymine DNA glycosylase", "type": "recommended", "evidence": [ { "id": "F1SRK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK8/entry#names_and_taxonomy" } ] }, { "name": "3.2.2.29", "type": "synonym", "evidence": [ { "id": "F1SRK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK8/entry#names_and_taxonomy" } ] }, { "name": "G/T mismatch-specific thymine DNA glycosylase", "type": "synonym", "evidence": [ { "id": "XP_020948293", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948293" } ] }, { "name": "Thymine-DNA glycosylase", "type": "synonym", "evidence": [ { "id": "F1SRK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TDG", "url": "https://www.uniprot.org/uniprotkb/F1SRK8", "locus": { "chromosome": "5", "start_pos": 80473234, "end_pos": 80492287, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000847", "url": "https://www.ensembl.org/id/ENSSSCG00000000847" } ] } } ], "crossref": [ { "id": "ENSSSCG00000000847", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000847", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10028", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10028", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155184", "url": "https://www.ncbi.nlm.nih.gov/gene/100155184", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003310", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003310", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015637", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015637", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155184", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155184", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ANMVNPE", "url": "https://omabrowser.org/oma/group/ANMVNPE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRK8", "url": "https://www.orthodb.org/?gene=F1SRK8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12159", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12159", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12159:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12159:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03167", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03167", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110329", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110329", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-110357", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110357", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3108214", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3108214", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5221030", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5221030", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020948293", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020948293", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRK8-1", "url": "https://www.uniprot.org/uniprotkb/F1SRK8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAENASSYSLQQAQAFYTFPFQQMMTEVPNMAATNEPGMPAEVPAPAPAQEPIQETPKGRKRRSRTTEPKTPVEPKKPAEAKKSGKSTKSKEKQEKITDTFKVKRKVDRFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLSHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNTDVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYGENPCSSEPCSFASNGLNDSGDSTFSDIPNGQWMTQPFTDQIPSFNNHRGTQEQEEGNCA", "length": 406, "header": "tr|F1SRK8-1|F1SRK8_PIG Isoform 1 of G/T mismatch-specific thymine DNA glycosylase OS=Sus scrofa OX=9823 GN=TDG PE=3 SV=3 CANONICAL=F1SRK8-1" }, "isoforms": [ { "isoform_ac": "F1SRK8-1", "url": "https://www.uniprot.org/uniprotkb/F1SRK8/entry#F1SRK8-1", "sequence": { "sequence": "MEAENASSYSLQQAQAFYTFPFQQMMTEVPNMAATNEPGMPAEVPAPAPAQEPIQETPKGRKRRSRTTEPKTPVEPKKPAEAKKSGKSTKSKEKQEKITDTFKVKRKVDRFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLSHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNTDVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGGAYGENPCSSEPCSFASNGLNDSGDSTFSDIPNGQWMTQPFTDQIPSFNNHRGTQEQEEGNCA", "length": 406, "header": "tr|F1SRK8-1|F1SRK8_PIG Isoform 1 of G/T mismatch-specific thymine DNA glycosylase OS=Sus scrofa OX=9823 GN=TDG PE=3 SV=3 CANONICAL=F1SRK8-1" }, "locus": { "chromosome": "5", "start_pos": 80492104, "end_pos": 80475026, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000924.4", "url": "https://www.ensembl.org/id/ENSSSCT00000000924.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000904.3", "url": "https://www.ensembl.org/id/ENSSSCP00000000904.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155184", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155184", "resource": "KEGG Pathway" }, { "id": "R-SSC-110329", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110329", "resource": "Reactome", "description": "Cleavage of the damaged pyrimidine" }, { "id": "R-SSC-110357", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110357", "resource": "Reactome", "description": "Displacement of DNA glycosylase by APEX1" }, { "id": "R-SSC-3108214", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3108214", "resource": "Reactome", "description": "SUMOylation of DNA damage response and repair proteins" }, { "id": "R-SSC-5221030", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5221030", "resource": "Reactome", "description": "TET1,2,3 and TDG demethylate DNA" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A096MIY3-1", "protein_name": "G/T mismatch-specific thymine DNA glycosylase", "gene_name": "Tdg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDAEAARSYSLEQVQALYSFPFQQMMAEAPNMADVAGQQMPAEAPAQDPVPEAPKRRKRKTRAAEAQDPVEPKKPAASKKSGKSTKSKEKQEKITDTFKVKRKVDRFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERSTDVQEVQYTFDLQLAQEDAKRTAVKEEKYDPGYEAAYGGACGENPCNGEPCGFASNGLTANSAELGGESAPSDVPNGQWMAQSFAEQIPSFNNCGTGEQEAGSHAGSHA", "length": 410 }, "evidence": [ { "id": "F1SRK8", "url": "https://omabrowser.org/oma/group/F1SRK8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A9J7J4M7-1", "protein_name": "G/T mismatch-specific thymine DNA glycosylase", "gene_name": "Tdg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MHSVFSPLPLSTAVPSYSLEQVQAFYSFPFQQMMAEAPNMAVTTEEQMPAEAPAQEPVPEAPNRRKRKARASEPKDPVEPKKTAGPKKSGKSTKSKEKQEKITDTFKVKRKVDRFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNTDVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYGSAYSENPCQSESCSFASNGLTADSAELRGEAAPGGVPNGQWMTQSFTDQIPSFNNCGTQEQEEGSQA", "length": 414 }, "evidence": [ { "id": "F1SRK8", "url": "https://omabrowser.org/oma/group/F1SRK8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 12, "go_terms": [ { "name": "G/U mismatch-specific uracil-DNA glycosylase activity", "id": "GO:0043739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043739", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "chloride ion binding", "id": "GO:0031404", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031404", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "protein kinase C binding", "id": "GO:0005080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005080", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "uracil DNA N-glycosylase activity", "id": "GO:0004844", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004844", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "mismatched DNA binding", "id": "GO:0030983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030983", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "sodium ion binding", "id": "GO:0031402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031402", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "SUMO binding", "id": "GO:0032183", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032183", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "pyrimidine-specific mismatch base pair DNA N-glycosylase activity", "id": "GO:0008263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008263", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "G/T mismatch-specific thymine-DNA glycosylase activity", "id": "GO:0141016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141016", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "PML body", "id": "GO:0016605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016605", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "epigenetic regulation of gene expression", "id": "GO:0040029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0040029", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "regulation of embryonic development", "id": "GO:0045995", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045995", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" }, { "name": "base-excision repair, AP site formation", "id": "GO:0006285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006285", "evidence": [ { "database": "UniProtKB", "id": "F1SRK8", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-110218", "name": "Cleavage of uracil by TDG glycosylase", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-110218", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110218" } ] }, { "id": "R-SSC-110219", "name": "Cleavage of thymine by TDG glycosylase", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-110219", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110219" } ] }, { "id": "R-SSC-110234", "name": "Cleavage of ethenocytosine by TDG glycosylase", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-110234", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110234" } ] }, { "id": "R-SSC-110350", "name": "Displacement of TDG glycosylase by APEX1 at the AP site", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-110350", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110350" } ] }, { "id": "R-SSC-4551648", "name": "SUMOylation of TDG with SUMO1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [ "R-SSC-4551718" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-4551648", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4551648" } ] }, { "id": "R-SSC-4551738", "name": "SUMOylation of TDG with SUMO2,3", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-65812" ], "output_participant_list": [ "R-SSC-4551628" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-4551738", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4551738" } ] }, { "id": "R-SSC-5220959", "name": "TDG excises 5-formylcytosine", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-ALL-5221062" ], "output_participant_list": [ "R-ALL-5221065" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5220959", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5220959" } ] }, { "id": "R-SSC-5221061", "name": "TDG excises 5-carboxylcytosine", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-ALL-5220996" ], "output_participant_list": [ "R-ALL-5221064" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5221061", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5221061" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-5220996", "participant_name": "DNA containing 5-caC [nucleoplasm]", "crossref": [ { "id": "4705", "database": "ChEBI", "url": "" }, { "id": "76793", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-5221062", "participant_name": "DNA containing 5-fC [nucleoplasm]", "crossref": [ { "id": "4705", "database": "ChEBI", "url": "" }, { "id": "76794", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-5221064", "participant_name": "5-caC [nucleoplasm]", "crossref": [ { "id": "76793", "database": "ChEBI", "url": "" }, { "id": "ZINC000001699911", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-ALL-5221065", "participant_name": "5-fC [nucleoplasm]", "crossref": [ { "id": "76794", "database": "ChEBI", "url": "" }, { "id": "ZINC000039053720", "database": "ZINC", "url": "" } ] }, { "participant_id": "R-SSC-4551628", "participant_name": "TDG [nucleoplasm]", "crossref": [ { "id": "ENSSSCT00000000924", "database": "ENSEMBL", "url": "" }, { "id": "93842", "database": "VGNC", "url": "" }, { "id": "ENSSSCG00000000847", "database": "ENSEMBL", "url": "" }, { "id": "F1SRK8", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000000904", "database": "ENSEMBL", "url": "" }, { "id": "XP_020948293.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-4551718", "participant_name": "TDG [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000000904", "database": "ENSEMBL", "url": "" }, { "id": "XP_020948293.1", "database": "RefSeq", "url": "" }, { "id": "F1SRK8", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000000847", "database": "ENSEMBL", "url": "" }, { "id": "93842", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000000924", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-65812", "participant_name": "TDG [nucleoplasm]", "crossref": [ { "id": "F1SRK8", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000000847", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000000904", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000000924", "database": "ENSEMBL", "url": "" }, { "id": "XP_020948293.1", "database": "RefSeq", "url": "" }, { "id": "93842", "database": "VGNC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRK8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK8" }, { "id": "PF03167", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03167" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Uracil-DNA glycosylase-like", "eco_id": "ECO_0000259", "start_pos": 129, "end_pos": 289, "start_aa": "Thr", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 364, "end_pos": 366 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRK9-1", "uniprot_ac": "F1SRK9", "uniprot_id": "F1SRK9_PIG", "mass": { "chemical_mass": 86489.0, "monoisotopic_mass": 86489.0 }, "refseq": { "ac": "XP_003126692", "name": "host cell factor 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126692" }, "gene_names": [ { "name": "HCFC2", "type": "recommended", "evidence": [ { "id": "F1SRK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" } ] }, { "name": "HCFC2", "type": "synonym", "evidence": [ { "id": "XP_003126692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126692" } ] } ], "protein_names": [ { "name": "Host cell factor 2", "type": "recommended", "evidence": [ { "id": "F1SRK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK9/entry#names_and_taxonomy" } ] }, { "name": "C2 factor", "type": "synonym", "evidence": [ { "id": "F1SRK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK9/entry#names_and_taxonomy" } ] }, { "name": "host cell factor 2", "type": "synonym", "evidence": [ { "id": "XP_003126692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126692" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRK9", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HCFC2", "url": "https://www.uniprot.org/uniprotkb/F1SRK9", "locus": { "chromosome": "5", "start_pos": 80368240, "end_pos": 80409775, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000000846", "url": "https://www.ensembl.org/id/ENSSSCG00000000846" } ] } } ], "crossref": [ { "id": "F1SRK9", "url": "https://alphafold.ebi.ac.uk/entry/F1SRK9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000000846", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000000846", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514768", "url": "https://www.ncbi.nlm.nih.gov/gene/100514768", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059124", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059124", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514768", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514768", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VFKTLYC", "url": "https://omabrowser.org/oma/group/VFKTLYC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRK9", "url": "https://www.orthodb.org/?gene=F1SRK9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46003:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46003:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13854", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13854", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9772755", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9772755", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003126692", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003126692", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SRK9", "url": "https://www.uniprot.org/uniprotkb/F1SRK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRK9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWRKVKPHPPSSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTAVIYCRRDSGSPKMYVFGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENIEASPHDCEWRCTSSFSYLNLDTAEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVPTVEGYLLQLNTDLPYQAPSSDSSASPNMQGVRMDPHRQGSNSIIPNSISDTMNSTKSEHTAMKGTSVKNKPDLKASTDSSAILHSSLATNASNHNSSVVDMLRKSEGPHTSADIGALSSCLDLRTVIPETSVSSTVSSAQTMVTQQTIKTESSSTNGAVVKDETSLTTFSTKSEVDETCALPAAKISRVETRAAATPFSKETTSNPVATVKAGERQWCDVGIFKNNTALVSQFYLLPKGKQSISKIGNADVPDYSLLKKQDLVPGTGYRFRVAAINGCGIGPFSKISEFKTCIPGFPGAPSAVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQIQDNPSQLVFMKIYCGLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQGNNKKAPLN", "length": 792, "header": "tr|F1SRK9-1|F1SRK9_PIG Isoform 1 of Host cell factor 2 OS=Sus scrofa OX=9823 GN=HCFC2 PE=4 SV=1 CANONICAL=F1SRK9-1" }, "isoforms": [ { "isoform_ac": "F1SRK9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRK9/entry#F1SRK9-1", "sequence": { "sequence": "MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWRKVKPHPPSSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTAVIYCRRDSGSPKMYVFGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENIEASPHDCEWRCTSSFSYLNLDTAEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVPTVEGYLLQLNTDLPYQAPSSDSSASPNMQGVRMDPHRQGSNSIIPNSISDTMNSTKSEHTAMKGTSVKNKPDLKASTDSSAILHSSLATNASNHNSSVVDMLRKSEGPHTSADIGALSSCLDLRTVIPETSVSSTVSSAQTMVTQQTIKTESSSTNGAVVKDETSLTTFSTKSEVDETCALPAAKISRVETRAAATPFSKETTSNPVATVKAGERQWCDVGIFKNNTALVSQFYLLPKGKQSISKIGNADVPDYSLLKKQDLVPGTGYRFRVAAINGCGIGPFSKISEFKTCIPGFPGAPSAVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQIQDNPSQLVFMKIYCGLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQGNNKKAPLN", "length": 792, "header": "tr|F1SRK9-1|F1SRK9_PIG Isoform 1 of Host cell factor 2 OS=Sus scrofa OX=9823 GN=HCFC2 PE=4 SV=1 CANONICAL=F1SRK9-1" }, "locus": { "chromosome": "5", "start_pos": 80409756, "end_pos": 80375001, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000000923.5", "url": "https://www.ensembl.org/id/ENSSSCT00000000923.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000000903.2", "url": "https://www.ensembl.org/id/ENSSSCP00000000903.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRK9", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514768", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514768", "resource": "KEGG Pathway" }, { "id": "R-SSC-9772755", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9772755", "resource": "Reactome", "description": "Formation of WDR5-containing histone-modifying complexes" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BEJ7-1", "protein_name": "Host cell factor 2", "gene_name": "HCFC2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWKKVKPHPPSSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGIVPSPRESHTAVIYCKRDSGSPKMYVFGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENIETSPHDCEWRCTSSFSYLNLDTAEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVPTVEGYLLQLNTDLPYQAVSSDPSASPNMQGVRMDPHRQGSNSIIPNSISDIVNSVKSEHTAVKGTSVKNKPDIKASTDSNASLHSSLAANASNHNSCVVDMLRKNEGPHTSANIGVLSSCLDLRTVIPETSVSSTVSSAQTMVTQQTIKTESSSTNGAVVKDETSLTTFSTKAEVDETCALPATKISRVEAHAATMPFSKETPSNPVAMVKAGERQWCDVGIFKNNTALVSQFYLLPKGKQSISKIGNADVPDYSLLKKQDLVPGTGYRFRVAAINGCGIGPFSKISEFKTCIPGFPGAPSAVRISKNVEGIHLSWEPPTSPSGNILEYSAYLAIRTAQIQDNPSQLVFMRIYCGLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQGNNKKAPLN", "length": 792 }, "evidence": [ { "id": "F1SRK9", "url": "https://omabrowser.org/oma/group/F1SRK9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RKG2-1", "protein_name": "Host cell factor 2", "gene_name": "Hcfc2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWKKVKPQPPPSGLPPCPRLGHSFSLYGNKCYLFAGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSVPATKGTVPSPRESHTAVIYCKRDSGSPKMYVFGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENTENSPHDCEWRCTSSFSYLNLDTAEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVPTVEGYLLQLNTDLTHQAASPDASAAPNTLGGRTDPHRQGSNSILHNSVSDPANCTKPEHTAVAARGMSLKSKPDSRAADSSVALHSPLAPNTSNNNSCMADMLWKSEVDEICALPATKISRVEAHAAATPFSKETPSNPVAILKAEQWCDVGIFKNNTALVSQFYLLPKGKQSMSKVGNADVPDYSLLKKQDLVPGTVYKFRVAAINGCGIGPFSKLSEFKTCIPGFPGAPSTVRISKNVEGIHLSWEPPTSPSGNILEYSAYLAIRTAQVQDNPSQLVFMRIYCGLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQGNSKKAPLS", "length": 723 }, "evidence": [ { "id": "F1SRK9", "url": "https://omabrowser.org/oma/group/F1SRK9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D968-1", "protein_name": "Host cell factor 2", "gene_name": "Hcfc2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTVTNQWFLPAVRGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWKKVKPQPPPSGFPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPATKGVVPSPRESHTAIIYCKKDSASPKMYVFGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENPETSPHDCEWRCTSSFSYLNLDTAEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVPTVEGYLLQLNTDLTYQATSSDSSAAPSVLGGRMDPHRQGSNSTLHNSVSDTVNSTKTEHTAVRGTSLRSKPDSRAVDSSAALHSPLAPNTSNNSSWVTDMLRKNEVDEICALPATKISRVEVHAAATPFSKETPSNPVAILKAEQWCDVGIFKNNTALVSQFYLLPKGKQSMSKVGNADVPDYSLLKKQDLVPGTVYKFRVAAINGCGIGPLSKVSEFKTCTPGFPGAPSTVRISKNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQDQEKDVGPWF", "length": 722 }, "evidence": [ { "id": "F1SRK9", "url": "https://omabrowser.org/oma/group/F1SRK9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y5Z7-1", "protein_name": "Host cell factor 2", "gene_name": "HCFC2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPSLLNWRRVSSFTGPVPRARHGHRAVAIRELMIIFGGGNEGIADELHVYNTATNQWFLPAVRGDIPPGCAAHGFVCDGTRILVFGGMVEYGRYSNELYELQASRWLWKKVKPHPPPSGLPPCPRLGHSFSLYGNKCYLFGGLANESEDSNNNVPRYLNDFYELELQHGSGVVGWSIPVTKGVVPSPRESHTAVIYCKKDSGSPKMYVFGGMCGARLDDLWQLDLETMSWSKPETKGTVPLPRSLHTASVIGNKMYIFGGWVPHKGENTETSPHDCEWRCTSSFSYLNLDTTEWTTLVSDSQEDKKNSRPRPRAGHCAVAIGTRLYFWSGRDGYKKALNSQVCCKDLWYLDTEKPPAPSQVQLIKATTNSFHVKWDEVSTVEGYLLQLSTDLPYQAASSDSSAAPNMQGVRMDPHRQGSNNIVPNSINDTINSTKTEQPATKETSMKNKPDFKALTDSNAILYPSLASNASNHNSHVVDMLRKNEGPHTSANVGVLSSCLDVRTVIPETSVSSTVSSTQTMVTQQTIKTESSSTNGAVVKDETSLTTFSTKSEVDETYALPATKISRVETHATATPFSKETPSNPVATVKAGERQWCDVGIFKNNTALVSQFYLLPKGKQSISKVGNADVPDYSLLKKQDLVPGTGYRFRVAAINGCGIGPFSKISEFKTCIPGFPGAPSAVRISKNVEGIHLSWEPPTSPSGNILEYSAYLAIRTAQIQDNPSQLVFMRIYCGLKTSCIVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQVRWLQGNNKKAPLN", "length": 792 }, "evidence": [ { "id": "F1SRK9", "url": "https://omabrowser.org/oma/group/F1SRK9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "X1WCP5-1", "protein_name": "Host cell factor 2", "gene_name": "hcfc2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIKKGPLWKRVRSYAGPVPRARHGHRAVAIRELLVVFGGGNEGIATDLHVYNSVTKQWFLPAVRGDIPPGCAAHGFVCEGTRILVFGGMVEFGQYTNSLYELQASRWLWKKLKPRPPKNGSLPCPRIGHSFTLHANKCYLFGGMANDSEDPNGNIPRYLDDFYELELQAQSGVKGWNVPETKGGGPSARESHSSVVYCGKGGSSPRLYIFGGMCGDRLNDLWQLDIETMTWSLPPTRGQLPLPRSLHTSNVIGNKLYVFGGWVPIGEEEEALAADGVKWICTNSLSMLNFDTLTWHNLTPEEHQQGLVEQDENNADWPRARAGHCAVTVGSRLCIWSGRDGYKKYNNYQVCCKDLWYLETERPATPGAVFLVKSTISMLHVAWRPLLAAECYLLQLQPITSHHSTSAEPQTAPTPPPEPGDRRESVQKDAKSADVKIKREKDYSSQESPLSQKEKGKDGADIQPTERDISPEPSKQPETTKDWFDVGVFKTLFCEVTHYFLPSENGDMASVLSAQYTSSDTEWKLPGPHSFTGCEKQELDSGITYRFRVAGLNSCGLGDFSPISEFKTCQPGFPGAPSAVKITKGTDSVHISWEPPTSVSGKIMEYSMYLAVRKSRGNSLVERPGELAFIRIYRGTKTSCTVTEAQLSNAHIDCSARPAIVFRIAAKNDQGYGPATQIRWLQDASKLKPSVMPTDSSSSAAEPDTTCR", "length": 708 }, "evidence": [ { "id": "F1SRK9", "url": "https://omabrowser.org/oma/group/F1SRK9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SRK9", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SRK9", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" } ], "pmid": "" }, { "name": "histone methyltransferase complex", "id": "GO:0035097", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035097", "evidence": [ { "database": "UniProtKB", "id": "F1SRK9", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1SRK9", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SRK9", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "F1SRK9", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 147, "end_pos": 149, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" }, { "start_pos": 476, "end_pos": 478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 606, "end_pos": 608, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRK9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 792, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRK9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRK9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRK9" }, { "id": "SM00060", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00060" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 357, "end_pos": 662, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 147, "end_pos": 149 }, { "start_pos": 434, "end_pos": 436 }, { "start_pos": 471, "end_pos": 473 }, { "start_pos": 476, "end_pos": 478 }, { "start_pos": 606, "end_pos": 608 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRM2-1", "uniprot_ac": "F1SRM2", "uniprot_id": "F1SRM2_PIG", "mass": { "chemical_mass": 53219.0, "monoisotopic_mass": 53219.0 }, "refseq": { "ac": "XP_020932360", "name": "zinc finger protein 622 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932360" }, "gene_names": [ { "name": "ZNF622", "type": "recommended", "evidence": [ { "id": "F1SRM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ] }, { "name": "ZNF622", "type": "synonym", "evidence": [ { "id": "XP_020932360", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932360" } ] } ], "protein_names": [ { "name": "Cytoplasmic 60S subunit biogenesis factor ZNF622", "type": "recommended", "evidence": [ { "id": "F1SRM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRM2/entry#names_and_taxonomy" } ] }, { "name": "Zinc finger protein 622", "type": "synonym", "evidence": [ { "id": "F1SRM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRM2/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 622 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020932360", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932360" } ] } ], "function": [ { "annotation": "Pre-60S-associated cytoplasmic factor involved in the cytoplasmic maturation of the 60S subunit.", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2#function" }, { "database": "UniProtKB", "id": "ARBA00059765", "url": "https://www.uniprot.org/uniprotkb/ARBA00059765#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF622", "url": "https://www.uniprot.org/uniprotkb/F1SRM2", "locus": { "chromosome": "16", "start_pos": 5699744, "end_pos": 5714516, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016793", "url": "https://www.ensembl.org/id/ENSSSCG00000016793" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016793", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016793", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100521757", "url": "https://www.ncbi.nlm.nih.gov/gene/100521757", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022755", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022755", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041661", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041661", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13182", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13182", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13182:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13182:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12756", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12756", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020932360", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932360", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATYTCNTCRVVLVDAEAQRAHYKTDWHRYNLRRKVAGMAPVSAEGFQERVRAQRALAEPESKGAATYCTVCSKKFASFKAYENHLKSRRHVELEKRAVSRKVAILNEKNLEKGLGVDGVDKDAVNAAIQQVIKAQPSTSPKKAAPALEAEFRSPVSVAAGGRGAHQRDPAEKPPRLQWFEQQARKLAKQQGEEESEEELDDGDDWEDIESDEEVECEDGEALDQEEEQDAEEEEAGGSPPLGAIPITDCLFCPHHSSSLVKNVAHMTKVHSFFLPDVEYLSDLKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMHDRSHCKLFTDGDALLEFADFYDFRSSYPDHKEGEDPDETEALPSEKPLGYDDDTMELILPSGARVGHRSLMRYYKQRFGLSRAVAVARNQKAVGRVLQQYRALGWTGSTGAALVRQRDMQYVQRMKSKWLLKMGVKNNATKQMHFRPQVMF", "length": 473, "header": "tr|F1SRM2-1|F1SRM2_PIG Isoform 1 of Cytoplasmic 60S subunit biogenesis factor ZNF622 OS=Sus scrofa OX=9823 GN=ZNF622 PE=3 SV=4 CANONICAL=F1SRM2-1" }, "isoforms": [ { "isoform_ac": "F1SRM2-1", "url": "https://www.uniprot.org/uniprotkb/F1SRM2/entry#F1SRM2-1", "sequence": { "sequence": "MATYTCNTCRVVLVDAEAQRAHYKTDWHRYNLRRKVAGMAPVSAEGFQERVRAQRALAEPESKGAATYCTVCSKKFASFKAYENHLKSRRHVELEKRAVSRKVAILNEKNLEKGLGVDGVDKDAVNAAIQQVIKAQPSTSPKKAAPALEAEFRSPVSVAAGGRGAHQRDPAEKPPRLQWFEQQARKLAKQQGEEESEEELDDGDDWEDIESDEEVECEDGEALDQEEEQDAEEEEAGGSPPLGAIPITDCLFCPHHSSSLVKNVAHMTKVHSFFLPDVEYLSDLKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEAVQAHMHDRSHCKLFTDGDALLEFADFYDFRSSYPDHKEGEDPDETEALPSEKPLGYDDDTMELILPSGARVGHRSLMRYYKQRFGLSRAVAVARNQKAVGRVLQQYRALGWTGSTGAALVRQRDMQYVQRMKSKWLLKMGVKNNATKQMHFRPQVMF", "length": 473, "header": "tr|F1SRM2-1|F1SRM2_PIG Isoform 1 of Cytoplasmic 60S subunit biogenesis factor ZNF622 OS=Sus scrofa OX=9823 GN=ZNF622 PE=3 SV=4 CANONICAL=F1SRM2-1" }, "locus": { "chromosome": "16", "start_pos": 5714377, "end_pos": 5699883, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018281.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018281.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017788.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017788.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "preribosome binding", "id": "GO:1990275", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990275", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" }, { "name": "preribosome, large subunit precursor", "id": "GO:0030687", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030687", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" }, { "name": "positive regulation of JNK cascade", "id": "GO:0046330", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046330", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" }, { "name": "ribosomal large subunit biogenesis", "id": "GO:0042273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042273", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" }, { "name": "intrinsic apoptotic signaling pathway in response to oxidative stress", "id": "GO:0008631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008631", "evidence": [ { "database": "UniProtKB", "id": "F1SRM2", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 460, "end_pos": 462, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRM2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRM2" }, { "id": "PS00028", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00028" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 69, "end_pos": 91, "start_aa": "Cys", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 460, "end_pos": 462 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRN9-1", "uniprot_ac": "F1SRN9", "uniprot_id": "F1SRN9_PIG", "mass": { "chemical_mass": 93394.0, "monoisotopic_mass": 93394.0 }, "refseq": { "ac": "XP_003134958", "name": "zinc finger protein 777 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134958" }, "gene_names": [ { "name": "ZNF777", "type": "recommended", "evidence": [ { "id": "F1SRN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ] }, { "name": "ZNF777", "type": "synonym", "evidence": [ { "id": "XP_003134958", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134958" } ] } ], "protein_names": [ { "name": "Zinc finger protein 777", "type": "synonym", "evidence": [ { "id": "F1SRN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRN9/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 777 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003134958", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134958" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF777", "url": "https://www.uniprot.org/uniprotkb/F1SRN9", "locus": { "chromosome": "18", "start_pos": 55614730, "end_pos": 55645523, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016775", "url": "https://www.ensembl.org/id/ENSSSCG00000016775" } ] } } ], "crossref": [ { "id": "F1SRN9", "url": "https://alphafold.ebi.ac.uk/entry/F1SRN9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016775", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016775", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520285", "url": "https://www.ncbi.nlm.nih.gov/gene/100520285", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520285", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520285", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ERGPAFN", "url": "https://omabrowser.org/oma/group/ERGPAFN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515:SF50", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515:SF50", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134958", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134958", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRN9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRN9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAQRSSPLSFPSILQEETPGQAPAGLPRETLFQSHVLPSKEAPSLSPAAPRQGSLPQTPSPPKQETSGRMPRVLQKGPSLLYPATSEQETQIQGPLTPQEETPFPPPAAAERETSLLSHSTHHQEAPLHSPEVPEKDPLTLSPTVPEADMDPLLQSPASQKDTPFQTSPGAQKDPPLPTAEITRLAVWAAVQAVERKLEAQAMRLLTLEGRTGTNEKKIADCEKTAVEFANHLESKWVVLGTLLQEYGLLQRRLENMENLLKNRNFWILRLPPGSNGEVPKVPVTFDDVAVHFSEQEWGNLSEWQKELYKNVMRGNYESLVSMDYAISKPDLMSQMERGERPVMQEQEDSEEGETPADPSAAHDGIVIKIEVQTNDEGSESLETPEPLMGQVEEHGFQDSELGDPCGEQPDLDMQERDTALEESTEGSNAFSKLKQMLVQQRNCAEGIVIKTEEQEEEEEEEEEDELPQHLQSLGQLSGRYEASMYPTPLPGELSPEGEESPPPLQLGNPAVKRLAPPSHGERHLGENRGAASQQQRNRRGERPFTCMECGKSFRLKINLIIHQRNHIKEGPYECAECEISFRHKQQLTLHQRIHRVRGGYASPERGPGFAPKHALKPRPKSPSSGSGGGPKPYKCPECDSSFSHKSSLTKHQITHTGERPYTCPECKKSFRLHISLVIHQRVHAGKHEVSFICSLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECGKSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFRYKQSLKYHLRTHTGE", "length": 830, "header": "tr|F1SRN9-1|F1SRN9_PIG Isoform 1 of Zinc finger protein 777 OS=Sus scrofa OX=9823 GN=ZNF777 PE=3 SV=5 CANONICAL=F1SRN9-1" }, "isoforms": [ { "isoform_ac": "F1SRN9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRN9/entry#F1SRN9-1", "sequence": { "sequence": "MEAQRSSPLSFPSILQEETPGQAPAGLPRETLFQSHVLPSKEAPSLSPAAPRQGSLPQTPSPPKQETSGRMPRVLQKGPSLLYPATSEQETQIQGPLTPQEETPFPPPAAAERETSLLSHSTHHQEAPLHSPEVPEKDPLTLSPTVPEADMDPLLQSPASQKDTPFQTSPGAQKDPPLPTAEITRLAVWAAVQAVERKLEAQAMRLLTLEGRTGTNEKKIADCEKTAVEFANHLESKWVVLGTLLQEYGLLQRRLENMENLLKNRNFWILRLPPGSNGEVPKVPVTFDDVAVHFSEQEWGNLSEWQKELYKNVMRGNYESLVSMDYAISKPDLMSQMERGERPVMQEQEDSEEGETPADPSAAHDGIVIKIEVQTNDEGSESLETPEPLMGQVEEHGFQDSELGDPCGEQPDLDMQERDTALEESTEGSNAFSKLKQMLVQQRNCAEGIVIKTEEQEEEEEEEEEDELPQHLQSLGQLSGRYEASMYPTPLPGELSPEGEESPPPLQLGNPAVKRLAPPSHGERHLGENRGAASQQQRNRRGERPFTCMECGKSFRLKINLIIHQRNHIKEGPYECAECEISFRHKQQLTLHQRIHRVRGGYASPERGPGFAPKHALKPRPKSPSSGSGGGPKPYKCPECDSSFSHKSSLTKHQITHTGERPYTCPECKKSFRLHISLVIHQRVHAGKHEVSFICSLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECGKSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFRYKQSLKYHLRTHTGE", "length": 830, "header": "tr|F1SRN9-1|F1SRN9_PIG Isoform 1 of Zinc finger protein 777 OS=Sus scrofa OX=9823 GN=ZNF777 PE=3 SV=5 CANONICAL=F1SRN9-1" }, "locus": { "chromosome": "18", "start_pos": 55640489, "end_pos": 55615054, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018262.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018262.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017770.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017770.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520285", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520285", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5ZP65-1", "protein_name": "Zinc finger protein 777", "gene_name": "Zfp777", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEAAPAPGRAARARTDARPRGPGDCLRAPGSAARPGVSVRAGRGDVSGEGAPWRARAPPGGEAGRGGRERRPSVRGCAAARLPDTRPEVGRGRRARSLAAEPALRPSGWPAARFPQSSAPRNSSRPGRGADAALPFRRAETLRHGHPAATCSACPKVQQLDMEDDRSSPLSFSRIPHEESVHQAPARLPRETVFSSCILPPKEISPLSPTAPQQAALPQTDSPPKQETSGQMSHVLQKGPSLLCPATSEQDTPHQVSLASQEETHSPPSAAGQGIPFLSHSTHHQDAPLHSPEAPEKDSLTLSPTVPETDMDPLLQSPTLQKDTPFHTSSAAQKEQPLPTAEITRLAVWAAVQAVERKLEAQAMRLLTLESRTGTNEKKIADCERTAVEFANHLESKWVVLGTLLQEYGLLQRRLENMENLLKNRNFWILRLPPGSNGEVPKVPVTFDDVAVHFSEQEWGNLSEWQKELYKNVMRGNYESLVSMDYAISKPDLMSQMERGERPAMQEQEDSEEGETPTDPSAAHDGIVIKIEVQTNDEGSEGLETPEPLMGQVEEHGFQDSELGDPCGEQPDLDMQDQENVLEESTEGSSEFSELKQMLVQQRNCTEGIVIKTEEQEEDEEEEEEDELPQHLQSLGQLSGRYEASMYQTPLPGEMSPEGEESPPPLQLGNPAVKRLAPSIHGHTHGHGHGERHLGENRGNSSQQQRNRRGERPFTCMECGKSFRLKINLIIHQRNHIKEGPYECAECEISFRHKQQLTLHQRIHRVRSGYASPERGSAFNPKHSLKPRPKSPSSGSGGGPKPYKCPECDSSFSHKSSLTKHQITHTGERPYTCPECKKSFRLHISLVIHQRVHAGKHEVSFICSLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECGKSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFRYKQSLKYHLRTHTGE", "length": 999 }, "evidence": [ { "id": "F1SRN9", "url": "https://omabrowser.org/oma/group/F1SRN9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ULD5-1", "protein_name": "Zinc finger protein 777", "gene_name": "ZNF777", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MENQRSSPLSFPSVPQEETLRQAPAGLPRETLFQSRVLPPKEIPSLSPTIPRQGSLPQTSSAPKQETSGRMPHVLQKGPSLLCSAASEQETSLQGPLASQEGTQYPPPAAAEQEVSLLSHSPHHQEAPVHSPEAPEKDPLTLSPTVPETDMDPLLQSPVSQKDTPFQISSAVQKEQPLPTAEITRLAVWAAVQAVERKLEAQAMRLLTLEGRTGTNEKKIADCEKTAVEFANHLESKWVVLGTLLQEYGLLQRRLENMENLLKNRNFWILRLPPGSNGEVPKVPVTFDDVAVHFSEQEWGNLSEWQKELYKNVMRGNYESLVSMDYAISKPDLMSQMERGERPTMQEQEDSEEGETPTDPSAAHDGIVIKIEVQTNDEGSESLETPEPLMGQVEEHGFQDSELGDPCGEQPDLDMQEPENTLEESTEGSSEFSELKQMLVQQRNCTEGIVIKTEEQDEEEEEEEEDELPQHLQSLGQLSGRYEASMYQTPLPGEMSPEGEESPPPLQLGNPAVKRLAPSVHGERHLSENRGASSQQQRNRRGERPFTCMECGKSFRLKINLIIHQRNHIKEGPYECAECEISFRHKQQLTLHQRIHRVRGGCVSPERGPTFNPKHALKPRPKSPSSGSGGGGPKPYKCPECDSSFSHKSSLTKHQITHTGERPYTCPECKKSFRLHISLVIHQRVHAGKHEVSFICSLCGKSFSRPSHLLRHQRTHTGERPFKCPECEKSFSEKSKLTNHCRVHSRERPHACPECGKSFIRKHHLLEHRRIHTGERPYHCAECGKRFTQKHHLLEHQRAHTGERPYPCTHCAKCFRYKQSLKYHLRTHTGE", "length": 831 }, "evidence": [ { "id": "F1SRN9", "url": "https://omabrowser.org/oma/group/F1SRN9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "pmid": "" }, { "name": "negative regulation of cell population proliferation", "id": "GO:0008285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008285", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "pmid": "" }, { "name": "protein heterooligomerization", "id": "GO:0051291", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051291", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SRN9", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRN9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 830, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRN9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRN9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 546, "end_pos": 573, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRN9" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 285, "end_pos": 356, "start_aa": "Val", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 301, "end_pos": 303 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRP3-1", "uniprot_ac": "F1SRP3", "uniprot_id": "F1SRP3_PIG", "mass": { "chemical_mass": 78868.0, "monoisotopic_mass": 78868.0 }, "refseq": { "ac": "XP_003134663", "name": "poly [ADP-ribose] polymerase 12 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134663" }, "gene_names": [ { "name": "PARP12", "type": "recommended", "evidence": [ { "id": "F1SRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ] }, { "name": "PARP12", "type": "synonym", "evidence": [ { "id": "XP_003134663", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134663" } ] } ], "protein_names": [ { "name": "Poly(ADP-ribose) polymerase family member 12", "type": "synonym", "evidence": [ { "id": "F1SRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRP3/entry#names_and_taxonomy" } ] }, { "name": "poly [ADP-ribose] polymerase 12 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003134663", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134663" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PARP12", "url": "https://www.uniprot.org/uniprotkb/F1SRP3", "locus": { "chromosome": "18", "start_pos": 9716743, "end_pos": 9674944, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016502", "url": "https://www.ensembl.org/id/ENSSSCG00000016502" } ] } } ], "crossref": [ { "id": "F1SRP3", "url": "https://alphafold.ebi.ac.uk/entry/F1SRP3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016502", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016502", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01439", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01439", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515805", "url": "https://www.ncbi.nlm.nih.gov/gene/100515805", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000571", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000571", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004170", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004170", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012317", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012317", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037197", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037197", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051712", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051712", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056226", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056226", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057602", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057602", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515805", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515805", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WKDLDNM", "url": "https://omabrowser.org/oma/group/WKDLDNM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRP3", "url": "https://www.orthodb.org/?gene=F1SRP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45740", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45740", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45740:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45740:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00644", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00644", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02825", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02825", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23466", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23466", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24356", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24356", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25261", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25261", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134663", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134663", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRP3-1", "url": "https://www.uniprot.org/uniprotkb/F1SRP3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPAALLREVTQTLCAAGGSLGLEELRRRLRPGVGGDALDRLLRECGHCVVVRRAAGAGAAAVEPSVLAASPLRLCTAHLGPKPSCHGLCAQLHLCKFVLYGQCKFLRDGKECRSSHTLRSDHNMSVLKTQGVDHLDFSELTVLLLQNDPQLLPEICLHYNKGDGPYGSCSFKKQCIKLHVCQYFSQGKCKFGTGCKRSHDFSNPENLEKLEKLGMRSDLVSRLPSIYRNAHDIKNKSSPLVRVPPPPSRSQGSSERRDTGSVCPNTAPQEESDQICLYHIWKSCSFQEKCSRVHFHLPYRWQVLDGGKWKDLPKMELIEEAYSNPRRDGITCTESAGSFPIGSLKFDSMTFGGTRARRLSTASSVTKPPHFILTTEWLWYWTDELGSWQEYGRQDMEHPVTSVNSSDLEKAYLAYCTPGSDAKAAILRFQAGKHTYELDFRAFIQKNLAYGTMRKVRRRPKYVSPQDVKMKQTCSVNFQGPKSIPEHWDHSAVPDTGFKRIALHSSSEEFQKVWNLFTCTMPNHCIQKIERVQNVALWEVYQWQKGQMQKRNGGKAVDERQLFHGTSTSLVDAICQQNFDWRVNGLHGTSYGKGSYFARDAAYSHHYSKSNTKSHTMFLARVLVGEFVRGNTSFVRPPAKEGQGTVLYDSCVNSVSDPSIFVIFEKHQAYPEYVIQYTALTKPMPAASNLLSLASLFSGRQ", "length": 702, "header": "tr|F1SRP3-1|F1SRP3_PIG Isoform 1 of Poly(ADP-ribose) polymerase family member 12 OS=Sus scrofa OX=9823 GN=PARP12 PE=3 SV=1 CANONICAL=F1SRP3-1" }, "isoforms": [ { "isoform_ac": "F1SRP3-1", "url": "https://www.uniprot.org/uniprotkb/F1SRP3/entry#F1SRP3-1", "sequence": { "sequence": "MAPAALLREVTQTLCAAGGSLGLEELRRRLRPGVGGDALDRLLRECGHCVVVRRAAGAGAAAVEPSVLAASPLRLCTAHLGPKPSCHGLCAQLHLCKFVLYGQCKFLRDGKECRSSHTLRSDHNMSVLKTQGVDHLDFSELTVLLLQNDPQLLPEICLHYNKGDGPYGSCSFKKQCIKLHVCQYFSQGKCKFGTGCKRSHDFSNPENLEKLEKLGMRSDLVSRLPSIYRNAHDIKNKSSPLVRVPPPPSRSQGSSERRDTGSVCPNTAPQEESDQICLYHIWKSCSFQEKCSRVHFHLPYRWQVLDGGKWKDLPKMELIEEAYSNPRRDGITCTESAGSFPIGSLKFDSMTFGGTRARRLSTASSVTKPPHFILTTEWLWYWTDELGSWQEYGRQDMEHPVTSVNSSDLEKAYLAYCTPGSDAKAAILRFQAGKHTYELDFRAFIQKNLAYGTMRKVRRRPKYVSPQDVKMKQTCSVNFQGPKSIPEHWDHSAVPDTGFKRIALHSSSEEFQKVWNLFTCTMPNHCIQKIERVQNVALWEVYQWQKGQMQKRNGGKAVDERQLFHGTSTSLVDAICQQNFDWRVNGLHGTSYGKGSYFARDAAYSHHYSKSNTKSHTMFLARVLVGEFVRGNTSFVRPPAKEGQGTVLYDSCVNSVSDPSIFVIFEKHQAYPEYVIQYTALTKPMPAASNLLSLASLFSGRQ", "length": 702, "header": "tr|F1SRP3-1|F1SRP3_PIG Isoform 1 of Poly(ADP-ribose) polymerase family member 12 OS=Sus scrofa OX=9823 GN=PARP12 PE=3 SV=1 CANONICAL=F1SRP3-1" }, "locus": { "chromosome": "18", "start_pos": 9714353, "end_pos": 9674965, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017966.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017966.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017484.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017484.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515805", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515805", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A3V3-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP12", "gene_name": "Parp12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQAAVAVAEVTQLLCAAGGALELAELRRRLRTSLGADALERLLRDRGRFVVASREGTGPATAAAAASERVVVAVSSLRLCRAHQGPKQGCTGLCAQLHLCKFLIYGNCKFLRTGKNCRNGHNLKTDHNLSVLRTHGIDHLTYTELCQLLLQNDPSLLPDICLHYNKGDGHFGSCSFQKQCIKLHICQYFLQGECKFGTSCKRSHEFTNSENLEKLEKLGLSSDLVSRLLSTYRNAYDIKNKGSALSKVSSSPAGPQGTSERKDSSVSPGTLSQEESEQICLYHIRKSCSFQDKCHRVHFHLPYRWQFLDGGEWKDLDNMELIENAYCNPSKDRIVYTESAAGFHFDNLDFNSMKLGHTLARRLSTASSVTKPPHFILTTEWAWYWMDEFGSWQEYGRQGTGHPVTTISSSDVEKAYLSFCVPGADAQAAILKFQAGKHNYELDFKAFLQKNLVYGTVRKVCRRPKYVSPQDVQMKQSCNTKLHGTKSIPDYWDPAALPDLGFKRITLSSSSEEYQKVWNLFNRTLPFYFVQKIERIQNLGLWEVYQWQKGQMQKQNGGKEVDERQLFHGTSTNFVDAICQQNFDWRVCGLHGTSYGKGSYFARDAAYSHHYSKSDTHSHTMFLARVLVGDFVRGSTSFVRPPAKEGQSNAFYDSCVNSMSDPTIFVVFEKHQVYPEYLIQYSTSSKPPAGPSIFVALGNLFTSRQ", "length": 706 }, "evidence": [ { "id": "F1SRP3", "url": "https://omabrowser.org/oma/group/F1SRP3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B7S1-1", "protein_name": "Poly(ADP-ribose) polymerase family member 12", "gene_name": "PARP12", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAPAALLREVTQVLCAAGGALELEELRRRVRPNVDCDVLDRLLRERGRFLVARRAAGAGAAAVERVVLAVSPLRLCSAHLGPKPGCAGLCAQLHLCKSLFYGKCKFLRDGKDCRNGHNLMSNHNVSVLKTHGLDHLNYGELCMLLFQNDPLLLPEICLHYNKGDGPYGSCSFKKHCIKLHVCQYFSQGECKFGTGCKRSHDFSNSENLEKLEKLGMRPELVSKLPSIYRNAHDIKNKSSASIRVPPPPSQSQGTSKRRDTGSVSLNTATQEESDQICLFHIWKSCSFQDKCSRVHFHLPYRWQVLDGGKWKDLHKMELIEEAYSNPARDRVRCTETSSSFLIGFLNFETMKFGATQARRLSTASSVTKPPHFILTTNWVWYWTDEFGSWQEYGRQGMDHPVTSVTSSDLEKAYLAYCASGSNPQAATLRFQAGKHSYELDFKAFIQKNVIYGTVRKVCRRPKYVSPQDVKMKQTCSINSQGLKNIPDHWDRSALPDTGFKRITVPSSSEEFQKVWSLFTSTMPLYSIQKIERVQNPALWEIYQWQKEQMQKRNGRKMVDERQLFHGTSTGLVDAICQQNFDWRVSGLHGTSYGKGSYFARDAAYSHHYSKTDSNTHTMFLARVLVGEFVRGSTAYVRPPIKEAQGNILYDSCVNSMSEPSIFVIFEKHQAYPEYVIQYTASTKPPAATPTFFSLASFFSGRQ", "length": 702 }, "evidence": [ { "id": "F1SRP3", "url": "https://omabrowser.org/oma/group/F1SRP3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BZ20-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP12", "gene_name": "Parp12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAQAAVAVAEVTQLLCAAGGALELAELRRRLRTSLGTDALERLLRDCGRFVVASRAVVAVGAGREAAAAASERLVLAVSSLRLCRAHQGPKPGCTGLCAQLHLCKFLIYGNCKFLKTGKNCRNGHNLKTDHNLSVLRTHGVDHLTYTELCQLLLQNDPSLLPDICLHYNKGDGPFGSCSFQKQCIKLHICQYFLQGECKFGTSCKRSHEFTNSESLEQLERLGLSSDLVSRLLSTYRNAYDIKNKGSALSKVSPSPAGPQGSSERKDSSGPVSPGTPSQEESEQICLYHIRKSCSFQEKCHRVHFHLPYRWQFLDGGKWKDLDNMELIEEAYSNPSKDRIVYTESAAGFHFDNLDFNSMKFGNTLARRLSTASSVTKPPHFILTTDWIWYWMDEFGSWQEYGRQGSGHPVTTISSSDVERAYLAFCAPGADAQAATLKFQAGKHNYELHFKAFLQKNLVYGTIRKVCRRPKYVSPQDVQMKQSCNTKLHGPKSIPDYWDPAALPDLGFKKITLSSSSEEYQKVWNIFNRTLPFYFVQKIERIQNMGLWEVYQWQKCQMQKQNGGKEVDERQLFHGTSANFVDAICQQNFDWRVCGLHGTSYGKGSYFARDAAYSHHYSKSDTHSHMMFLARVLVGDFVRGSTSFVRPPAKEGQSNAFYDSCVNSMSDPTIFVVFEKHQVYPEYLIQYSTSSKPPASPSIFVALGNLFTSRQ", "length": 711 }, "evidence": [ { "id": "F1SRP3", "url": "https://omabrowser.org/oma/group/F1SRP3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H0J9-1", "protein_name": "Protein mono-ADP-ribosyltransferase PARP12", "gene_name": "PARP12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQAGVVGEVTQVLCAAGGALELPELRRRLRMGLSADALERLLRQRGRFVVAVRAGGAAAAPERVVLAASPLRLCRAHQGSKPGCVGLCAQLHLCRFMVYGACKFLRAGKNCRNSHSLTTEHNLSVLRTHGVDHLSYNELCQLLFQNDPWLLPEICQHYNKGDGPHGSCAFQKQCIKLHICQYFLQGECKFGTSCKRSHDFSNSENLEKLEKLGMSSDLVSRLPTIYRNAHDIKNKSSAPSRVPPLFVPQGTSERKDSSGSVSPNTLSQEEGDQICLYHIRKSCSFQDKCHRVHFHLPYRWQFLDRGKWEDLDNMELIEEAYCNPKIERILCSESASTFHSHCLNFNAMTYGATQARRLSTASSVTKPPHFILTTDWIWYWSDEFGSWQEYGRQGTVHPVTTVSSSDVEKAYLAYCTPGSDGQAATLKFQAGKHNYELDFKAFVQKNLVYGTTKKVCRRPKYVSPQDVTTMQTCNTKFPGPKSIPDYWDSSALPDPGFQKITLSSSSEEYQKVWNLFNRTLPFYFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHGTSAIFVDAICQQNFDWRVCGVHGTSYGKGSYFARDAAYSHHYSKSDTQTHTMFLARVLVGEFVRGNASFVRPPAKEGWSNAFYDSCVNSVSDPSIFVIFEKHQVYPEYVIQYTTSSKPSVTPSILLALGSLFSSRQ", "length": 701 }, "evidence": [ { "id": "F1SRP3", "url": "https://omabrowser.org/oma/group/F1SRP3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "NAD+-protein mono-ADP-ribosyltransferase activity", "id": "GO:1990404", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990404", "evidence": [ { "database": "UniProtKB", "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ], "pmid": "" }, { "name": "NAD+ poly-ADP-ribosyltransferase activity", "id": "GO:0003950", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003950", "evidence": [ { "database": "UniProtKB", "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein auto-ADP-ribosylation", "id": "GO:0070213", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070213", "evidence": [ { "database": "UniProtKB", "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ], "pmid": "" }, { "name": "transepithelial transport", "id": "GO:0070633", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070633", "evidence": [ { "database": "UniProtKB", "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F1SRP3", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 632, "end_pos": 634, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRP3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 702, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRP3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRP3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" }, { "id": "PS50103", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50103" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C3H1-type", "eco_id": "ECO_0000259", "start_pos": 181, "end_pos": 203, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" }, { "id": "PS51059", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51059" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PARP catalytic", "eco_id": "ECO_0000259", "start_pos": 485, "end_pos": 699, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRP3" }, { "id": "PS50918", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50918" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WWE", "eco_id": "ECO_0000259", "start_pos": 365, "end_pos": 459, "start_aa": "Ser", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 }, { "start_pos": 236, "end_pos": 238 }, { "start_pos": 405, "end_pos": 407 }, { "start_pos": 632, "end_pos": 634 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRR9-1", "uniprot_ac": "F1SRR9", "uniprot_id": "F1SRR9_PIG", "mass": { "chemical_mass": 68072.0, "monoisotopic_mass": 68072.0 }, "refseq": {}, "gene_names": [ { "name": "MOXD2", "type": "recommended", "evidence": [ { "id": "F1SRR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ] } ], "protein_names": [ { "name": "Monooxygenase DBH like 2", "type": "synonym", "evidence": [ { "id": "F1SRR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRR9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MOXD2", "url": "https://www.uniprot.org/uniprotkb/F1SRR9", "locus": {} } ], "crossref": [ { "id": "F1SRR9", "url": "https://alphafold.ebi.ac.uk/entry/F1SRR9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016486", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016486", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd09631", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09631", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000323", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000323", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000945", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000945", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005018", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005018", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008977", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008977", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014784", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014784", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024548", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024548", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028460", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028460", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045266", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045266", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10157", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10157", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10157:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10157:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01082", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01082", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03351", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03351", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03712", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03712", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRR9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRR9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAHALLLQLLLLSALAAPSQGNRLGPTSSLRYSRFLDPSNVIFLRWDFDLDAEIIAFELRVRTAGWVGLGITNRYTRAGSDLVVGGVSPDGHVYFSDQHVVDEDTLEEDGSQDAELQGLTEDAVYTTMRFSRPFRSCDPQDQDITSDTVRVLAAYGPDDTLKLDRERMFVKSIFLLQIIHPDDLDAPEDAIIHDLEITDFLIPEDDTTYACTFLPLPIVSKKHHIYKFEPKLEPHNETMVHHILVYACGNASALPTGISDCYGADPAFSLCSQVIVGWAVGGTSYQFPDDVGISIGTPLDPQWIRLEIHYSNFHNLPGVYDSSGIRVYYTAKLRKYDMGVLQLGFFTFPIHFIPPGAESFMSYGLCKTDKFEEMNGAPVLDIQVYGYLLHTHLAGRALQAVQYRNGTQLQTICKDDSYDFNLQETRDLPYRMVIKPAFVSLSLQLALSFLLQGGPSTINEMCLIFLFYYPRNNISSCMGYPDIIYVAHELGEEASDSMEGMMAMNNVEWTPESIKKAEKACKEAQQTVIIKTIDELVENTTGWIPEIVPTPRGPCLESSGGKVEPEDQTPAGFRAAPMALSVSSAATPSRLPLAAFLLGQGTLSWLLATLQAGV", "length": 614, "header": "tr|F1SRR9-1|F1SRR9_PIG Isoform 1 of Monooxygenase DBH like 2 OS=Sus scrofa OX=9823 GN=MOXD2 PE=3 SV=3 CANONICAL=F1SRR9-1" }, "isoforms": [ { "isoform_ac": "F1SRR9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRR9/entry#F1SRR9-1", "sequence": { "sequence": "MAHALLLQLLLLSALAAPSQGNRLGPTSSLRYSRFLDPSNVIFLRWDFDLDAEIIAFELRVRTAGWVGLGITNRYTRAGSDLVVGGVSPDGHVYFSDQHVVDEDTLEEDGSQDAELQGLTEDAVYTTMRFSRPFRSCDPQDQDITSDTVRVLAAYGPDDTLKLDRERMFVKSIFLLQIIHPDDLDAPEDAIIHDLEITDFLIPEDDTTYACTFLPLPIVSKKHHIYKFEPKLEPHNETMVHHILVYACGNASALPTGISDCYGADPAFSLCSQVIVGWAVGGTSYQFPDDVGISIGTPLDPQWIRLEIHYSNFHNLPGVYDSSGIRVYYTAKLRKYDMGVLQLGFFTFPIHFIPPGAESFMSYGLCKTDKFEEMNGAPVLDIQVYGYLLHTHLAGRALQAVQYRNGTQLQTICKDDSYDFNLQETRDLPYRMVIKPAFVSLSLQLALSFLLQGGPSTINEMCLIFLFYYPRNNISSCMGYPDIIYVAHELGEEASDSMEGMMAMNNVEWTPESIKKAEKACKEAQQTVIIKTIDELVENTTGWIPEIVPTPRGPCLESSGGKVEPEDQTPAGFRAAPMALSVSSAATPSRLPLAAFLLGQGTLSWLLATLQAGV", "length": 614, "header": "tr|F1SRR9-1|F1SRR9_PIG Isoform 1 of Monooxygenase DBH like 2 OS=Sus scrofa OX=9823 GN=MOXD2 PE=3 SV=3 CANONICAL=F1SRR9-1" }, "locus": { "chromosome": "18", "start_pos": 7750226, "end_pos": 7741220, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017950.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017950.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017468.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017468.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 27, "start_aa": "Thr", "end_pos": 27, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr27", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 550, "start_aa": "Thr", "end_pos": 550, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr550", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 587, "start_aa": "Thr", "end_pos": 587, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr587", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ], "pmid": "" }, { "name": "secretory granule membrane", "id": "GO:0030667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030667", "evidence": [ { "database": "UniProtKB", "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "copper ion binding", "id": "GO:0005507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005507", "evidence": [ { "database": "UniProtKB", "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ], "pmid": "" }, { "name": "dopamine beta-monooxygenase activity", "id": "GO:0004500", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004500", "evidence": [ { "database": "UniProtKB", "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "dopamine catabolic process", "id": "GO:0042420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042420", "evidence": [ { "database": "UniProtKB", "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ], "pmid": "" }, { "name": "octopamine biosynthetic process", "id": "GO:0006589", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006589", "evidence": [ { "database": "UniProtKB", "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ], "pmid": "" }, { "name": "norepinephrine biosynthetic process", "id": "GO:0042421", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042421", "evidence": [ { "database": "UniProtKB", "id": "F1SRR9", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 236, "end_pos": 238, "annotation": "n_glycosylation_sequon" }, { "start_pos": 250, "end_pos": 252, "annotation": "n_glycosylation_sequon" }, { "start_pos": 405, "end_pos": 407, "annotation": "n_glycosylation_sequon" }, { "start_pos": 473, "end_pos": 475, "annotation": "n_glycosylation_sequon" }, { "start_pos": 539, "end_pos": 541, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRR9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 614, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRR9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRR9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRR9" }, { "id": "PS50836", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50836" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DOMON", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 156, "start_aa": "Asn", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 27, 550, 587 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 236, "end_pos": 238 }, { "start_pos": 250, "end_pos": 252 }, { "start_pos": 405, "end_pos": 407 }, { "start_pos": 473, "end_pos": 475 }, { "start_pos": 539, "end_pos": 541 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRT0-1", "uniprot_ac": "F1SRT0", "uniprot_id": "F1SRT0_PIG", "mass": { "chemical_mass": 32168.0, "monoisotopic_mass": 32168.0 }, "refseq": { "ac": "XP_003121908", "name": "39S ribosomal protein L46, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121908" }, "gene_names": [ { "name": "MRPL46", "type": "recommended", "evidence": [ { "id": "F1SRT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ] }, { "name": "MRPL46", "type": "synonym", "evidence": [ { "id": "XP_003121908", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121908" } ] } ], "protein_names": [ { "name": "Large ribosomal subunit protein mL46", "type": "recommended", "evidence": [ { "id": "F1SRT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT0/entry#names_and_taxonomy" } ] }, { "name": "39S ribosomal protein L46, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_003121908", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121908" }, { "id": "F1SRT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MRPL46", "url": "https://www.uniprot.org/uniprotkb/F1SRT0", "locus": { "chromosome": "1", "start_pos": 191331319, "end_pos": 191321999, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005105", "url": "https://www.ensembl.org/id/ENSSSCG00000005105" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005105", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005105", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04661", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04661", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523040", "url": "https://www.ncbi.nlm.nih.gov/gene/100523040", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "4V1A", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=4V1A&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5AJ4&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GAW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6GB2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=6YDW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NQL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSH&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7NSJ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8OIQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8OIQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR015797", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015797", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523040", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523040", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "EKWDLYA", "url": "https://omabrowser.org/oma/group/EKWDLYA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRT0", "url": "https://www.orthodb.org/?gene=F1SRT0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13124", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13124", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13124:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13124:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00004v1a", "url": "https://www.rcsb.org/structure/pdb_00004v1a", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005aj4", "url": "https://www.rcsb.org/structure/pdb_00005aj4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gaw", "url": "https://www.rcsb.org/structure/pdb_00006gaw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006gb2", "url": "https://www.rcsb.org/structure/pdb_00006gb2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydp", "url": "https://www.rcsb.org/structure/pdb_00006ydp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00006ydw", "url": "https://www.rcsb.org/structure/pdb_00006ydw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nqh", "url": "https://www.rcsb.org/structure/pdb_00007nqh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nql", "url": "https://www.rcsb.org/structure/pdb_00007nql", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsh", "url": "https://www.rcsb.org/structure/pdb_00007nsh", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsi", "url": "https://www.rcsb.org/structure/pdb_00007nsi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007nsj", "url": "https://www.rcsb.org/structure/pdb_00007nsj", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oin", "url": "https://www.rcsb.org/structure/pdb_00008oin", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008oiq", "url": "https://www.rcsb.org/structure/pdb_00008oiq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "4V1A", "url": "https://www.rcsb.org/structure/4V1A", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5AJ4", "url": "https://www.rcsb.org/structure/5AJ4", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GAW", "url": "https://www.rcsb.org/structure/6GAW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6GB2", "url": "https://www.rcsb.org/structure/6GB2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDP", "url": "https://www.rcsb.org/structure/6YDP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "6YDW", "url": "https://www.rcsb.org/structure/6YDW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQH", "url": "https://www.rcsb.org/structure/7NQH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NQL", "url": "https://www.rcsb.org/structure/7NQL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSH", "url": "https://www.rcsb.org/structure/7NSH", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSI", "url": "https://www.rcsb.org/structure/7NSI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7NSJ", "url": "https://www.rcsb.org/structure/7NSJ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIN", "url": "https://www.rcsb.org/structure/8OIN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8OIQ", "url": "https://www.rcsb.org/structure/8OIQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF11788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5389840", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5419276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9937383", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003121908", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003121908", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRT0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAPVRRTMLRVVRGWRRFEGPWAHSLGSRNLALAVAPSSSSSPWRLLGALCLQRPPLVTKPLTPLQEEMADLLQQIEIERSLYSDHELRALDEAQQLAKKKSDLYEEEDEQNILLAQDLEDMWEQKFLHFKLGARLTEADKKDDRTSLHRKLDRNLILLVREKLGDQDIWMLPQSDWQPGETLRQTAERTLATLSENNMEAKFLGNAPCGHYKFKFPQAMRTETSLGAKVFFFKALLLTGDFSQAGKKGHHVWVSKEELGDYLKPKYLAQVRRFLLDL", "length": 279, "header": "tr|F1SRT0-1|F1SRT0_PIG Isoform 1 of Large ribosomal subunit protein mL46 OS=Sus scrofa OX=9823 GN=MRPL46 PE=1 SV=1 CANONICAL=F1SRT0-1" }, "isoforms": [ { "isoform_ac": "F1SRT0-1", "url": "https://www.uniprot.org/uniprotkb/F1SRT0/entry#F1SRT0-1", "sequence": { "sequence": "MAAPVRRTMLRVVRGWRRFEGPWAHSLGSRNLALAVAPSSSSSPWRLLGALCLQRPPLVTKPLTPLQEEMADLLQQIEIERSLYSDHELRALDEAQQLAKKKSDLYEEEDEQNILLAQDLEDMWEQKFLHFKLGARLTEADKKDDRTSLHRKLDRNLILLVREKLGDQDIWMLPQSDWQPGETLRQTAERTLATLSENNMEAKFLGNAPCGHYKFKFPQAMRTETSLGAKVFFFKALLLTGDFSQAGKKGHHVWVSKEELGDYLKPKYLAQVRRFLLDL", "length": 279, "header": "tr|F1SRT0-1|F1SRT0_PIG Isoform 1 of Large ribosomal subunit protein mL46 OS=Sus scrofa OX=9823 GN=MRPL46 PE=1 SV=1 CANONICAL=F1SRT0-1" }, "locus": { "chromosome": "1", "start_pos": 191331180, "end_pos": 191322023, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005627.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005627.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005486.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005486.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The complete structure of the large subunit of the mammalian mitochondrial ribosome.", "journal": "Nature", "date": "2014", "authors": "Greber Basil J, Boehringer Daniel, Leibundgut Marc, Bieri Philipp, Leitner Alexander, Schmitz Nikolaus, Aebersold Ruedi, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "reference": [ { "type": "PubMed", "id": "25271403", "url": "https://glygen.org/publication/PubMed/25271403" } ] }, { "title": "Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.", "journal": "Science", "date": "2015", "authors": "Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "reference": [ { "type": "PubMed", "id": "25837512", "url": "https://glygen.org/publication/PubMed/25837512" } ] }, { "title": "Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.", "journal": "Nature", "date": "2018", "authors": "Kummer Eva, Leibundgut Marc, Rackham Oliver, Lee Richard G, Boehringer Daniel, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "reference": [ { "type": "PubMed", "id": "30089917", "url": "https://glygen.org/publication/PubMed/30089917" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1.", "journal": "EMBO J.", "date": "2020", "authors": "Kummer E, Ban N", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "reference": [ { "type": "PubMed", "id": "32602580", "url": "https://glygen.org/publication/PubMed/32602580" } ] }, { "title": "Structural basis of translation termination, rescue, and recycling in mammalian mitochondria.", "journal": "Mol. Cell", "date": "2021", "authors": "Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "reference": [ { "type": "PubMed", "id": "33878294", "url": "https://glygen.org/publication/PubMed/33878294" } ] }, { "title": "Molecular basis of translation termination at noncanonical stop codons in human mitochondria.", "journal": "Science", "date": "2023", "authors": "Saurer Martin, Leibundgut Marc, Nadimpalli Hima Priyanka, Scaiola Alain, Sch\u00f6nhut Tanja, Lee Richard G, Siira Stefan J, Rackham Oliver, Dreos Ren\u00e9, Lenar\u010di\u010d Tea, Kummer Eva, Gatfield David, Filipovska Aleksandra, Ban Nenad", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "reference": [ { "type": "PubMed", "id": "37141370", "url": "https://glygen.org/publication/PubMed/37141370" } ] } ], "pathway": [ { "id": "ssc:100523040", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523040", "resource": "KEGG Pathway" }, { "id": "R-SSC-5389840", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5389840", "resource": "Reactome", "description": "Mitochondrial translation elongation" }, { "id": "R-SSC-5419276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5419276", "resource": "Reactome", "description": "Mitochondrial translation termination" }, { "id": "R-SSC-9937383", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9937383", "resource": "Reactome", "description": "Mitochondrial ribosome-associated quality control" } ], "orthologs": [ { "uniprot_canonical_ac": "Q3SZ22-1", "protein_name": "Large ribosomal subunit protein mL46", "gene_name": "MRPL46", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAAPTRRTVLGLARCWRRFESPWSLGSRSLTLAAAPSNSASPWRLLGALCLQRPPLVSKQLTPMQEEMAALLQQMEIERSLYSDHELRALDEAEQLEKKKSDLYEEKDEKNILLVQDLEDMWEQKFLQFKPGARITDADVKNDRSSLHRKLDRNLILLVKDKLGDQDVWMLPQAEWQPGETLRQTAERTLATLSENNLEAKFLGNAPCGHYKFKFPQAVRAEGSLGAKIFFFKALLLTGDFSPAVEKGRHVWASKEELGDYLKPKYLAQVRRFLLDL", "length": 277 }, "evidence": [ { "id": "F1SRT0", "url": "https://omabrowser.org/oma/group/F1SRT0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5RK00-1", "protein_name": "Large ribosomal subunit protein mL46", "gene_name": "Mrpl46", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAPIGRTLLGVAKGWRQLDRLWAGSSRGLSLEAAPSSSRSPWRLSGALCLQRPPLITKPLTPLQEEMAGLLQQVEVERSLYSDHELRALDEAQRLAKKKADLYDEEQDQDVTLAQDLEDMWEQEFLQFRPGARETEADKKNDRTSLHRKLDRNLILLVREKLGDQDLWMLPQVEWQPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIRTESDLGVKVFFFKALLLTGDFVQTGKKGRHVWASKEELGDYLQPKYLAQVRRFLLDL", "length": 277 }, "evidence": [ { "id": "F1SRT0", "url": "https://omabrowser.org/oma/group/F1SRT0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9EQI8-1", "protein_name": "Large ribosomal subunit protein mL46", "gene_name": "Mrpl46", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAPVGRTLLGLARGWRQLDRFWAGSSRGLSLEAASSSSRSPWRLSGALCLQRPPLITKALTPLQEEMAGLLQQIEVERSLYSDHELRALDEAQRLAKKKADLYDEEQEQGITLAQDLEDMWEQAFLQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKLGDQDVWMLPQVEWQPGETLRGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLTGDFVQAGKKSRHVWASKEELGDYLQPKYLAQVRRFLLDSDGLSCL", "length": 283 }, "evidence": [ { "id": "F1SRT0", "url": "https://omabrowser.org/oma/group/F1SRT0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H2W6-1", "protein_name": "Large ribosomal subunit protein mL46", "gene_name": "MRPL46", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAPVRRTLLGVAGGWRRFERLWAGSLSSRSLALAAAPSSNGSPWRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKADLHDEEDEQDILLAQDLEDMWEQKFLQFKLGARITEADEKNDRTSLNRKLDRNLVLLVREKFGDQDVWILPQAEWQPGETLRGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGHHVWVTKDELGDYLKPKYLAQVRRFVSDL", "length": 279 }, "evidence": [ { "id": "F1SRT0", "url": "https://omabrowser.org/oma/group/F1SRT0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W086-1", "protein_name": "Large ribosomal subunit protein mL46", "gene_name": "mRpL46", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLRRIVQVGARELSRAQSSTASAEKWDLYAGVLVERLPVVSKSLNPLEKQFQDLLWRVEYENSLKSDHELKHEREIVQAELIKQGKIQVDLEDAGSKQTAQDLKDAYVEELKKFQLGSRTTPDDQANRTTSTDRCLDDTLYLLVQQKLGQQEHLILPQGKREEGESMRQTAERVLRESCGQELQVLFYGNAPVGFHKYKYPRNQRTETVGAKVFFYRASLRSGQVPENLTKFEWLPKEALNEKLTNTAYAQSVKKFLL", "length": 258 }, "evidence": [ { "id": "F1SRT0", "url": "https://omabrowser.org/oma/group/F1SRT0/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial large ribosomal subunit", "id": "GO:0005762", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005762", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "pmid": "" }, { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F1SRT0", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT0" }, { "id": "PF11788", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11788" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Large ribosomal subunit protein mL46 N-terminal", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 141, "start_aa": "Trp", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 7 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRT6-1", "uniprot_ac": "F1SRT6", "uniprot_id": "F1SRT6_PIG", "mass": { "chemical_mass": 108813.0, "monoisotopic_mass": 108813.0 }, "refseq": {}, "gene_names": [ { "name": "EPHB6", "type": "recommended", "evidence": [ { "id": "F1SRT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ] } ], "protein_names": [ { "name": "Ephrin type-B receptor 6", "type": "recommended", "evidence": [ { "id": "F1SRT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT6/entry#names_and_taxonomy" } ] }, { "name": "Tyrosine-protein kinase-defective receptor EPH-6", "type": "synonym", "evidence": [ { "id": "F1SRT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Kinase-defective receptor for members of the ephrin-B family. Binds to ephrin-B1 and ephrin-B2. Modulates cell adhesion and migration by exerting both positive and negative effects upon stimulation with ephrin-B2. Inhibits JNK activation, T-cell receptor-induced IL-2 secretion and CD25 expression upon stimulation with ephrin-B2.", "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6#function" }, { "database": "UniProtKB", "id": "ARBA00059300", "url": "https://www.uniprot.org/uniprotkb/ARBA00059300#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EPHB6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6", "locus": { "chromosome": "18", "start_pos": 7346565, "end_pos": 7389504, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016473", "url": "https://www.ensembl.org/id/ENSSSCG00000016473" } ] } } ], "crossref": [ { "id": "F1SRT6", "url": "https://alphafold.ebi.ac.uk/entry/F1SRT6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016473", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016473", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10475", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10475", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001090", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001090", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001426", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001426", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016257", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016257", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050449", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050449", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46877", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46877", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46877:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46877:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00041", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00041", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01404", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01404", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07647", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07647", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07714", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07714", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14575", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14575", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25599", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25599", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2682334", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2682334", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3928662", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928662", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3928664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3928665", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928665", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRT6-1", "url": "https://www.uniprot.org/uniprotkb/F1SRT6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEGPAPSGSGVAGMVCSLWVLVLVSSVLALEEVLLDTTGETSEIGWLTYPPGGWDEVSVLDDQRRLTRTFEACHVAGAPPGSGQDNWLQTHFVERRGAQRAHIRLHFSVRACSSLGVAGGTCRETFTLYYRQAEEPDGPDSISAWHLKRWTKVDTIAADESFPTSSAWAVGPRGAGPRAGLQLNVKERSFGPLTQRGFYVAFQDTGACLALVAVKLFSYACPSVLRAFASFPETQASGAGGASLVAAMGTCVAHAEPEEDGGGGQAGGSPPRLHCNGEGKWMVAVGGCRCQPGYQPVRGDKACQACPGGSYKALAANAPCSPCPARSHAPDPAAPVCPCLKGFYRATSDPPEAACTGPPSAPRELWFEVQGSALMLHWRLPQELGGRGDLLFNVVCKECGQGKGPCRRCRDEVHFDPRQRGLTESRVLVGGLRAHVPYILEVQAVNGVSELSPDPPQATAINVSTSHAVPSAVPAVHQVSRAANSITVSWPQPDQTNGNILDYQLRYYDQAEDESRSFTLTSETNTATVTQLSPGHIYGFQVRARTAAGHGPFGGKVYFQTLPQGELATQLPERLSLVIGSILGALAFLLLAAITVLALVFQRKRRGTGYMEQLQQYSSPGLGVKYYIDPSTYEDPCQALREFTREIDPTYVKIEEVIGAGSFGEVRRGRLQPRGRREQPVAIQALWTGGAESLQMTFLGQAAVLGQFQHPNILRLEGVVTKSRPLMVLTELMELGPLDSFLRQREGQFSSLQLVAMQRGVAAAMQYLSSFAFVHRALSAHSVLVNSHLVCKVARLGHTPQGPSCMLRWAAPEVIAHGKYTTSSDVWSFGIVMWEVMSYGERPYWDMSDQEVLNAIEQEFRLPPPPGCPPGLHLLMLDTWQKERTQRPHFDQLVAAFDKMIRKPDTLQAGGSPGDRPSQALLNPVALDFPSLDSPQAWLSAIGLECYRDTFSQSGLCTFTEVAQLSLEDLPALGITLAGHQKKLLHHIQLLKQHLRPPGSVEV", "length": 1005, "header": "tr|F1SRT6-1|F1SRT6_PIG Isoform 1 of Ephrin type-B receptor 6 OS=Sus scrofa OX=9823 GN=EPHB6 PE=4 SV=5 CANONICAL=F1SRT6-1" }, "isoforms": [ { "isoform_ac": "F1SRT6-1", "url": "https://www.uniprot.org/uniprotkb/F1SRT6/entry#F1SRT6-1", "sequence": { "sequence": "MAAEGPAPSGSGVAGMVCSLWVLVLVSSVLALEEVLLDTTGETSEIGWLTYPPGGWDEVSVLDDQRRLTRTFEACHVAGAPPGSGQDNWLQTHFVERRGAQRAHIRLHFSVRACSSLGVAGGTCRETFTLYYRQAEEPDGPDSISAWHLKRWTKVDTIAADESFPTSSAWAVGPRGAGPRAGLQLNVKERSFGPLTQRGFYVAFQDTGACLALVAVKLFSYACPSVLRAFASFPETQASGAGGASLVAAMGTCVAHAEPEEDGGGGQAGGSPPRLHCNGEGKWMVAVGGCRCQPGYQPVRGDKACQACPGGSYKALAANAPCSPCPARSHAPDPAAPVCPCLKGFYRATSDPPEAACTGPPSAPRELWFEVQGSALMLHWRLPQELGGRGDLLFNVVCKECGQGKGPCRRCRDEVHFDPRQRGLTESRVLVGGLRAHVPYILEVQAVNGVSELSPDPPQATAINVSTSHAVPSAVPAVHQVSRAANSITVSWPQPDQTNGNILDYQLRYYDQAEDESRSFTLTSETNTATVTQLSPGHIYGFQVRARTAAGHGPFGGKVYFQTLPQGELATQLPERLSLVIGSILGALAFLLLAAITVLALVFQRKRRGTGYMEQLQQYSSPGLGVKYYIDPSTYEDPCQALREFTREIDPTYVKIEEVIGAGSFGEVRRGRLQPRGRREQPVAIQALWTGGAESLQMTFLGQAAVLGQFQHPNILRLEGVVTKSRPLMVLTELMELGPLDSFLRQREGQFSSLQLVAMQRGVAAAMQYLSSFAFVHRALSAHSVLVNSHLVCKVARLGHTPQGPSCMLRWAAPEVIAHGKYTTSSDVWSFGIVMWEVMSYGERPYWDMSDQEVLNAIEQEFRLPPPPGCPPGLHLLMLDTWQKERTQRPHFDQLVAAFDKMIRKPDTLQAGGSPGDRPSQALLNPVALDFPSLDSPQAWLSAIGLECYRDTFSQSGLCTFTEVAQLSLEDLPALGITLAGHQKKLLHHIQLLKQHLRPPGSVEV", "length": 1005, "header": "tr|F1SRT6-1|F1SRT6_PIG Isoform 1 of Ephrin type-B receptor 6 OS=Sus scrofa OX=9823 GN=EPHB6 PE=4 SV=5 CANONICAL=F1SRT6-1" }, "locus": { "chromosome": "18", "start_pos": 7355665, "end_pos": 7348706, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017937.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017937.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017456.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017456.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2682334", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2682334", "resource": "Reactome", "description": "EPH-Ephrin signaling" }, { "id": "R-SSC-3928662", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928662", "resource": "Reactome", "description": "EPHB-mediated forward signaling" }, { "id": "R-SSC-3928664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928664", "resource": "Reactome", "description": "Ephrin signaling" }, { "id": "R-SSC-3928665", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3928665", "resource": "Reactome", "description": "EPH-ephrin mediated repulsion of cells" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ], "pmid": "" }, { "name": "transmembrane-ephrin receptor activity", "id": "GO:0005005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005005", "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ephrin receptor signaling pathway", "id": "GO:0048013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048013", "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ], "pmid": "" }, { "name": "axon guidance", "id": "GO:0007411", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007411", "evidence": [ { "database": "UniProtKB", "id": "F1SRT6", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRT6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1005, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRT6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRT6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" }, { "id": "PS51550", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51550" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Eph LBD", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 228, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" }, { "id": "PS50853", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50853" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-III", "eco_id": "ECO_0000259", "start_pos": 360, "end_pos": 470, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 654, "end_pos": 903, "start_aa": "Val", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SRT6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRT6" }, { "id": "PS50105", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50105" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAM", "eco_id": "ECO_0000259", "start_pos": 932, "end_pos": 996, "start_aa": "Pro", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 464, "end_pos": 466 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRV8-1", "uniprot_ac": "F1SRV8", "uniprot_id": "F1SRV8_PIG", "mass": { "chemical_mass": 108788.0, "monoisotopic_mass": 108788.0 }, "refseq": { "ac": "XP_020934220", "name": "chloride channel protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934220" }, "gene_names": [ { "name": "CLCN1", "type": "recommended", "evidence": [ { "id": "F1SRV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ] }, { "name": "CLCN1", "type": "synonym", "evidence": [ { "id": "XP_020934220", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934220" } ] } ], "protein_names": [ { "name": "Chloride channel protein", "type": "recommended", "evidence": [ { "id": "F1SRV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRV8/entry#names_and_taxonomy" } ] }, { "name": "chloride channel protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020934220", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934220" } ] } ], "function": [ { "annotation": "Voltage-gated chloride channel involved in skeletal muscle excitability. Generates most of the plasma membrane chloride conductance in skeletal muscle fibers, stabilizes the resting membrane potential and contributes to the repolarization phase during action potential firing. Forms a homodimeric channel where each subunit has its own ion conduction pathway. Conducts double-barreled currents controlled by two types of gates, two fast glutamate gates that control each subunit independently and a slow common gate that opens and shuts off both subunits simultaneously. Has a significant open probability at muscle resting potential and is further activated upon membrane depolarization. Permeable to small monovalent anions with ion selectivity for chloride > thiocyanate > bromide > nitrate > iodide.", "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8#function" }, { "database": "UniProtKB", "id": "ARBA00057972", "url": "https://www.uniprot.org/uniprotkb/ARBA00057972#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CLCN1", "url": "https://www.uniprot.org/uniprotkb/F1SRV8", "locus": { "chromosome": "18", "start_pos": 6902542, "end_pos": 6940449, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000056050", "url": "https://www.ensembl.org/id/ENSSSCG00000056050" } ] } } ], "crossref": [ { "id": "F1SRV8", "url": "https://alphafold.ebi.ac.uk/entry/F1SRV8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016464", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016464", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03683", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03683", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520812", "url": "https://www.ncbi.nlm.nih.gov/gene/100520812", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000644", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000644", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001807", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001807", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002243", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002243", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046342", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046342", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520812", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520812", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KHIGDPE", "url": "https://omabrowser.org/oma/group/KHIGDPE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SRV8", "url": "https://www.orthodb.org/?gene=F1SRV8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45720", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45720", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45720:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45720:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2672351", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020934220", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934220", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29823", "url": "https://www.rhea-db.org/rhea/29823", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "34923", "url": "https://www.rhea-db.org/rhea/34923", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "66324", "url": "https://www.rhea-db.org/rhea/66324", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "75347", "url": "https://www.rhea-db.org/rhea/75347", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "75383", "url": "https://www.rhea-db.org/rhea/75383", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SRV8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPSESQRRGREQSWWGSAPQYQYMPFEHCTSYGLPSENGGLQHRLRRDAGPRPSAHPTQIYGHHKEQFSDKEPDMGMPEKMGSSSSVDSKDEDRYSKCQGCIHRMGLVVRRKLGEDWIFLVLLGLLMALVSWCMDYVSAKSLQAYKWTYYQMQPNLPLQFLVWVTFPLVLILFSALFCHLISPQAVGSGIPEMKTILRGVVLKEYLTLKAFVAKVVALTAGLGSGIPVGKEGPFVHIASICAAVLSKFMSVFCGVYEQPYYYTDMLTVGCAVGVGCCFGTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFDLQELPAFAVIGICCGFLGAVFVYLHRQVMLGVRKHKGLSQFLAKHRLLYPGIVTFVIASFTFPPGIGQFMAGELMPREAISTLFDNHTWVKHVGDPESLGRSAVWIHPKVNVVVVILLFFIMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPDGILFDDIIYKILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYDSIIQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSASCTYGELQNLLQTTTLKTLPLVDSKDSMILLGSVERSELQSLLQRHLCPERRLRAAQDMARKLSELPFDGKAGVGRRGVWPQGRPESFAFVDEDEDEDVCGKPEPSPLTPPLPFSTAPLHPEEPNGPLPSPKQQPEAPEPAGQRPSVFRTLLRCLLGRARPTKKKPTQEPVDLVDNMSPEDIEAWEREQLSQPVCFDCCCIDQSPFQLVEQTSLHKTHTLFSLLGLHLAYVTSMGKLRGVLALEELQKAIEGHTKSGVQLRPPLASFRSTTSTRKTPGGPLPPAEAWTMPDDGTGATSAGDAAPDSPETPVPSPSPEPPLSRAPAKAESELEELELAESPGPEEELADILQGPSLRLTDEEDEDELIL", "length": 986, "header": "tr|F1SRV8-1|F1SRV8_PIG Isoform 1 of Chloride channel protein OS=Sus scrofa OX=9823 GN=CLCN1 PE=3 SV=3 CANONICAL=F1SRV8-1" }, "isoforms": [ { "isoform_ac": "F1SRV8-1", "url": "https://www.uniprot.org/uniprotkb/F1SRV8/entry#F1SRV8-1", "sequence": { "sequence": "MEPSESQRRGREQSWWGSAPQYQYMPFEHCTSYGLPSENGGLQHRLRRDAGPRPSAHPTQIYGHHKEQFSDKEPDMGMPEKMGSSSSVDSKDEDRYSKCQGCIHRMGLVVRRKLGEDWIFLVLLGLLMALVSWCMDYVSAKSLQAYKWTYYQMQPNLPLQFLVWVTFPLVLILFSALFCHLISPQAVGSGIPEMKTILRGVVLKEYLTLKAFVAKVVALTAGLGSGIPVGKEGPFVHIASICAAVLSKFMSVFCGVYEQPYYYTDMLTVGCAVGVGCCFGTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFDLQELPAFAVIGICCGFLGAVFVYLHRQVMLGVRKHKGLSQFLAKHRLLYPGIVTFVIASFTFPPGIGQFMAGELMPREAISTLFDNHTWVKHVGDPESLGRSAVWIHPKVNVVVVILLFFIMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPDGILFDDIIYKILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYDSIIQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSASCTYGELQNLLQTTTLKTLPLVDSKDSMILLGSVERSELQSLLQRHLCPERRLRAAQDMARKLSELPFDGKAGVGRRGVWPQGRPESFAFVDEDEDEDVCGKPEPSPLTPPLPFSTAPLHPEEPNGPLPSPKQQPEAPEPAGQRPSVFRTLLRCLLGRARPTKKKPTQEPVDLVDNMSPEDIEAWEREQLSQPVCFDCCCIDQSPFQLVEQTSLHKTHTLFSLLGLHLAYVTSMGKLRGVLALEELQKAIEGHTKSGVQLRPPLASFRSTTSTRKTPGGPLPPAEAWTMPDDGTGATSAGDAAPDSPETPVPSPSPEPPLSRAPAKAESELEELELAESPGPEEELADILQGPSLRLTDEEDEDELIL", "length": 986, "header": "tr|F1SRV8-1|F1SRV8_PIG Isoform 1 of Chloride channel protein OS=Sus scrofa OX=9823 GN=CLCN1 PE=3 SV=3 CANONICAL=F1SRV8-1" }, "locus": { "chromosome": "18", "start_pos": 6940355, "end_pos": 6904316, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017925.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017925.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017444.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017444.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 727, "start_aa": "Thr", "end_pos": 727, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr727", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520812", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520812", "resource": "KEGG Pathway" }, { "id": "R-SSC-2672351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "resource": "Reactome", "description": "Stimuli-sensing channels" } ], "orthologs": [ { "uniprot_canonical_ac": "A0AC58HJB7-1", "protein_name": "Chloride channel protein 1 isoform X2", "gene_name": "clcn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIREPINTFETVLNFDQVLLYGEYREQLGNISRREATRLLTEKQWKRHADNSKATRRGHGRAHHASLDVGPLTPGLSPSSSLIKSHPYFKCQDCLARVQRYIVTKLGEDWIFLVLLGLTMALVSWSMDYASAKSIQAYKWMYGELKGNVALQYLAWVSYPIILVVFASLFCHLVAPQAIGSGIPELKTILRGVVLKEYLTLKAFVAKVIGLTAGLGSGMPIGKEGPFVHIASICAAVLSRVMSIFTGVYENSAHVQDLLVCACAVGVATCFAAPVGGVLFSIEVTSTYFAVRNYWRGYFAATFSAFIFRVLSVWNKDSVTITALFRTNFRMDFPFDLQELPAFAIIGISCGFLGAFFVYLNRQVVLIMRRPTALTRFLTKHRLIYPGAVTLIIASFTFPPGFGQFMAGELMPRECINSLFDNYTWTKIWGSPVPPGLGRSAAWLHPQVSVFVILLLFFVMKFWMSAVSTTMPVPSGAFMPVFILGAAFGRLVGEIMATLFPNGILFDGIVYQILPGGYAVIGAAAMTGAVTHTVSTAVICFELTGQISHILPMMVAVILANMVAQGLQPSLYDSIIQVKKLPYLPELGIGHISKYNIFVEDIMVKKIKFLSPQSTYRELKDLLESTSLKTIPLIDSKDTMILLGSIERCELQAALDWWLSAERRVYNRGEGMASLVSEGSWESFVFVDEEVGEENRDKGNRVSEECNGPVGSSKTTDISTNHTTSGALKSMRRTFQRLFSSSSSSGQTKPEFTKLSPAGGVKSPAAPPVVDNMTPEEIKAWEEKELDKPIGIDQIRVDPSPFQLVERTSLHKTHTLFSLLGLSHAYVTSIGKLVGVVALKELQKAIEGSTRSGVRLRPPLASFRDARRKTKKPSHSPSIPSSPTQDIELWSEAVRRESKEESAGSCIQTVEKECESSRNIVSTSEEQLPSSSTVPLSSLHSVPGGEGDAEKERDEEPL", "length": 958 }, "evidence": [ { "id": "F1SRV8", "url": "https://omabrowser.org/oma/group/F1SRV8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P35523-1", "protein_name": "Chloride channel protein 1", "gene_name": "CLCN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEQSRSQQRGGEQSWWGSDPQYQYMPFEHCTSYGLPSENGGLQHRLRKDAGPRHNVHPTQIYGHHKEQFSDREQDIGMPKKTGSSSTVDSKDEDHYSKCQDCIHRLGQVVRRKLGEDGIFLVLLGLLMALVSWSMDYVSAKSLQAYKWSYAQMQPSLPLQFLVWVTFPLVLILFSALFCHLISPQAVGSGIPEMKTILRGVVLKEYLTMKAFVAKVVALTAGLGSGIPVGKEGPFVHIASICAAVLSKFMSVFCGVYEQPYYYSDILTVGCAVGVGCCFGTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFDLKELPAFAAIGICCGLLGAVFVYLHRQVMLGVRKHKALSQFLAKHRLLYPGIVTFVIASFTFPPGMGQFMAGELMPREAISTLFDNNTWVKHAGDPESLGQSAVWIHPRVNVVIIIFLFFVMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPDGILFDDIIYKILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYDSIIQVKKLPYLPDLGWNQLSKYTIFVEDIMVRDVKFVSASYTYGELRTLLQTTTVKTLPLVDSKDSMILLGSVERSELQALLQRHLCPERRLRAAQEMARKLSELPYDGKARLAGEGLPGAPPGRPESFAFVDEDEDEDLSGKSELPPSLALHPSTTAPLSPEEPNGPLPGHKQQPEAPEPAGQRPSIFQSLLHCLLGRARPTKKKTTQDSTDLVDNMSPEEIEAWEQEQLSQPVCFDSCCIDQSPFQLVEQTTLHKTHTLFSLLGLHLAYVTSMGKLRGVLALEELQKAIEGHTKSGVQLRPPLASFRNTTSTRKSTGAPPSSAENWNLPEDRPGATGTGDVIAASPETPVPSPSPEPPLSLAPGKVEGELEELELVESPGLEEELADILQGPSLRSTDEEDEDELIL", "length": 988 }, "evidence": [ { "id": "F1SRV8", "url": "https://omabrowser.org/oma/group/F1SRV8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P35524-1", "protein_name": "Chloride channel protein 1", "gene_name": "Clcn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MERSQSQQHGGEQSWWGTAPQYQYMPFEHCTSYGLPSENGGLQHRPRKDLGPRHNAHPTQIYGHHKEQYSYQAQDRGIPKKTDSSSTVDSLDEDHYSKCQDCVHRLGRVLRRKLGEDWIFLVLLGLLMALVSWCMDYVSAKSLQAYKWTYAQMQPSLPLQYLAWVTFPLILILFSALFCQLISPQAVGSGIPEMKTILRGVVLKEYLTLKAFVAKVVALTAGLGSGIPVGKEGPFVHIASICAAVLSKFMSMFSGVYEQPYYYTDILTVGCAVGVGCCFGTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFDLKELPAFAVIGICCGFLGAVFVYLHRQVMLGVRKHKALSQFLAKHRLLYPGIVTFVIASLTFPPGMGQFMAGELMPREAISTLFDNNTWVKHIGDPKSLGQSAVWIHPQVNVVIIILLFFVMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPEGILFDDIIYKILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYDSIIQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSASCTYGELRNLLQTTTVKTLPLVDSKDSMILLGSVERSELQSLLQRHLCAERRLKAAQDMARKLSELPYNGQAQLAGEWHPGGRPESFAFVDEDEDEDVSRKTELPQTPTPPPPPPPPLPPQFPIAPSYPEEPNGPLPSHKQPPEASDSADQRSSIFQRLLHCLLGKAHSTKKKITQDSTDLVDNMSPEEIEAWEREQLSQPVCFDFCCIDQSPFQLVEQTTLHKTHTLFSLLGLHLAYVTSMGKLRGVLALEELQKAIKGHTKSGVQLRPPLASFRNTTSIRKTPGGPPPPAESWNVPEGEDGAPEREVMVPTMPETPVPPPSPEVPSCLAPARVEGELEELEMVGNLGPEEDLADILHGPSLRSTDEEDEDELIL", "length": 994 }, "evidence": [ { "id": "F1SRV8", "url": "https://omabrowser.org/oma/group/F1SRV8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64347-1", "protein_name": "Chloride channel protein 1", "gene_name": "Clcn1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERSQSQRHGGEQSWWGSAPQYQYMPFEHCTSYGLPSENGGLQHRPRKDMGPRHNAHPTQIYGHQKEQYSYKAQDGGMPKKMGSSSTMDSLDEDHYSKCQDCVHRLGRVLRRKLGEDWIFLVLLGLLMALVSWCMDYVSAKSLQAYKWTYAQMKPSLPLQYLAWVTFPLILILFSALFCQLISPQAVGSGIPEMKTILRGVVLKEYLTLKAFVAKVVALTAGLGSGIPVGKEGPFVHIASICAAVLSKFMSMFSGVYEQPYYYTDILTVGCAVGVGCCFGTPLGGVLFSIEVTSTYFAVRNYWRGFFAATFSAFVFRVLAVWNKDAVTITALFRTNFRMDFPFDLKELPAFAVIGICCGFLGAVFVYLHRQVMLGVRKHKCLSQFLAKHRLLYPGIVTFVIASLTFPPGMGQFMAGELMPREAISTLFDNNTWVKHIGDPQSLGQSAVWLHPQVNVIIIILLFFVMKFWMSIVATTMPIPCGGFMPVFVLGAAFGRLVGEIMAMLFPEGILFDDIIYKILPGGYAVIGAAALTGAVSHTVSTAVICFELTGQIAHILPMMVAVILANMVAQSLQPSLYDSIIQVKKLPYLPDLGWNQLSKFTIFVEDIMVRDVKFVSASCTYGELRNLLQATTVKTLPLVDSKDSMILLGSVERSELQSLLQRHLCAERRLKAAQDMARKLSELPYNGKAQLAGDWHPGGRPESFAFVDEDEDEDLSRKMELPLTPAPPPPSPPPPPSQFPIAPSNPEEPNGPLPSHKQPPEASDSADQRSSTFQRLLHCLLGKAHSKKKKITQDSTDLVDNMSPEEIEAWEREQLSQPVCFDCCCIDQSPFQLVEQTTLHKTHTLFSLLGLHLAYVTSMGKLRGVLALEELQKAIEGHTKSGVQLRPPLASFRNTTSIRKTPGGPPPPAEGWNVPEDGDGAPGREVMVPTMPETPVPPPSPEAPSCLAPARAEGELEELEMVGSLEPEEELADILHGPSLRSTDEEDEDELIL", "length": 994 }, "evidence": [ { "id": "F1SRV8", "url": "https://omabrowser.org/oma/group/F1SRV8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ], "pmid": "" }, { "name": "chloride channel complex", "id": "GO:0034707", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034707", "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ], "pmid": "" }, { "name": "T-tubule", "id": "GO:0030315", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030315", "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "muscle contraction", "id": "GO:0006936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006936", "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ], "pmid": "" }, { "name": "chloride transport", "id": "GO:0006821", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006821", "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ], "pmid": "" }, { "name": "voltage-gated chloride channel activity", "id": "GO:0005247", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005247", "evidence": [ { "database": "UniProtKB", "id": "F1SRV8", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 430, "end_pos": 432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 794, "end_pos": 796, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "29823", "name": "", "equation": "chloride(in) = chloride(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "29823", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/29823" } ] }, { "id": "34923", "name": "", "equation": "nitrate(in) = nitrate(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "34923", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/34923" } ] }, { "id": "66324", "name": "", "equation": "iodide(out) = iodide(in)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "66324", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/66324" } ] }, { "id": "75347", "name": "", "equation": "thiocyanate(in) = thiocyanate(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "75347", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/75347" } ] }, { "id": "75383", "name": "", "equation": "bromide(in) = bromide(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "75383", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/75383" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRV8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 986, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRV8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRV8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRV8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRV8" }, { "id": "PS51371", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51371" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CBS", "eco_id": "ECO_0000259", "start_pos": 609, "end_pos": 668, "start_aa": "Met", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 727 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 430, "end_pos": 432 }, { "start_pos": 794, "end_pos": 796 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SRZ9-1", "uniprot_ac": "F1SRZ9", "uniprot_id": "F1SRZ9_PIG", "mass": { "chemical_mass": 44733.0, "monoisotopic_mass": 44733.0 }, "refseq": {}, "gene_names": [ { "name": "CATIP", "type": "recommended", "evidence": [ { "id": "F1SRZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" } ] } ], "protein_names": [ { "name": "Ciliogenesis-associated TTC17-interacting protein", "type": "recommended", "evidence": [ { "id": "F1SRZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a role in primary ciliogenesis by modulating actin polymerization.", "evidence": [ { "database": "UniProtKB", "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9#function" }, { "database": "UniProtKB", "id": "ARBA00037538", "url": "https://www.uniprot.org/uniprotkb/ARBA00037538#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CATIP", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9", "locus": { "chromosome": "15", "start_pos": 120425439, "end_pos": 120419473, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016187", "url": "https://www.ensembl.org/id/ENSSSCG00000016187" } ] } } ], "crossref": [ { "id": "F1SRZ9", "url": "https://alphafold.ebi.ac.uk/entry/F1SRZ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016187", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016187", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22973", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22973", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR047501", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047501", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048777", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048777", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SPGCCMI", "url": "https://omabrowser.org/oma/group/SPGCCMI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR15505", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15505", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15505:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15505:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21772", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21772", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SRZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSKVQSKGSKAKDHQPSAQAGLPPPEANAEAIHFLDSLRQEELLMLLFSETLVMVSDTGEPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCGTSLLGYLSWKLEIVEQHNQEFIKFHTLPMERKMKLLKQDDQLAVTRTVKEGEEVKTKVIVFPWHSIAGFISEAANLVLLRVMGWRRTVPSNARFLALDTEGKLCYSTYQALGSQTIQVGRQQVEVFIVEQTVHSEEGIPMSYQFYLLSDGHLAKRIQVGSPGCCTITKVPILREEDAIEPRPVFEKKPLMWEEDMELFSKFIDRKEELRLSHNSYLRQHPEAHALISDFLLFLLLRQPADVVTFAAEYFGPFAMRRASTPALRSSNRPSPFRALQPEGGEAEEREAGSKAGEGPAG", "length": 398, "header": "tr|F1SRZ9-1|F1SRZ9_PIG Isoform 1 of Ciliogenesis-associated TTC17-interacting protein OS=Sus scrofa OX=9823 GN=CATIP PE=3 SV=3 CANONICAL=F1SRZ9-1" }, "isoforms": [ { "isoform_ac": "F1SRZ9-1", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9/entry#F1SRZ9-1", "sequence": { "sequence": "MSSKVQSKGSKAKDHQPSAQAGLPPPEANAEAIHFLDSLRQEELLMLLFSETLVMVSDTGEPQGELTIDVQRGKYKDEFGIMSYCPFVHASSRGYVDGVLCGTSLLGYLSWKLEIVEQHNQEFIKFHTLPMERKMKLLKQDDQLAVTRTVKEGEEVKTKVIVFPWHSIAGFISEAANLVLLRVMGWRRTVPSNARFLALDTEGKLCYSTYQALGSQTIQVGRQQVEVFIVEQTVHSEEGIPMSYQFYLLSDGHLAKRIQVGSPGCCTITKVPILREEDAIEPRPVFEKKPLMWEEDMELFSKFIDRKEELRLSHNSYLRQHPEAHALISDFLLFLLLRQPADVVTFAAEYFGPFAMRRASTPALRSSNRPSPFRALQPEGGEAEEREAGSKAGEGPAG", "length": 398, "header": "tr|F1SRZ9-1|F1SRZ9_PIG Isoform 1 of Ciliogenesis-associated TTC17-interacting protein OS=Sus scrofa OX=9823 GN=CATIP PE=3 SV=3 CANONICAL=F1SRZ9-1" }, "locus": { "chromosome": "15", "start_pos": 120425302, "end_pos": 120419513, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017627.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017627.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017149.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017149.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z9J4-1", "protein_name": "Ciliogenesis-associated TTC17-interacting protein", "gene_name": "CATIP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAAAKFLNHIGPEELESCLFEETLALVAAGGRPQGHLWVTARHAPYEQEGQQVRSCLLLQAGSKGLLDGVPYSCRLTGYVSMQLETLEQEQHERLEFGAHPTERKIHMVQHPHGMTVTVTTREGEAEPQHQVFSYGWASLEGLLGEAASLLLLRVLACRRAVPPSITFPAIDKEGHLCTTTYRSLGVQQQPVGSTQVEVLVVERALHAAQGIPMVWYHSLLPSGHLARRVQVGCPVVAVLQDAPALSSTGAEPQPLFPKQLLDWEEDAQLCSWFLDRKEELRASHSTYVQQHPELFALLADFLQALLLRQPQNPILFAAEFFAPFARRQPPGPSFASSVSLSPFCSTSCPNPPPQGD", "length": 358 }, "evidence": [ { "id": "F1SRZ9", "url": "https://omabrowser.org/oma/group/F1SRZ9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q08CH6-1", "protein_name": "Ciliogenesis-associated TTC17-interacting protein", "gene_name": "catip", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEESELTQNETEELKASVSAVEFIHIAQRDLEQCLFADSLVTVSDSGRELGDFSVSVTKASYNEELCYLLHANSHGTIDDVPCGTSIVAYISRKLEILEENHHEYVKLEKKTVDRKIHIVRQDDQLVVDRVISEREGVKTQTLKFPLSSLDGFVSEASNFLLLRIMARQKIVPENMTFLSLDADSGLSKSVYKALGWQKQMVGEDLVDIFGIERTIYSANLSSATWHCFFMPDGHLASRVQLGSPAVMKLLHLPFLLDGVIKTFFFLVEKDKIPVMEKKPLIWEEDMELYSKFLDRKEELKADYSSYLRQHPELKALLADFLQFLLLRKPQDVFSFARDFFAPFASQSPPGKSQEF", "length": 356 }, "evidence": [ { "id": "F1SRZ9", "url": "https://omabrowser.org/oma/group/F1SRZ9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7Z7H3-1", "protein_name": "Ciliogenesis-associated TTC17-interacting protein", "gene_name": "CATIP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSSKVYSTGSRAKDHQPSGPECLPLPEANAEAIDFLSSLHKEELQMLFFSETLAMVSDTGEPQGELTIEVQRGKYQEKLGMLTYCLFVHASSRGFLDKMLCGNSLLGYLSEKLELMEQHSQDFIKFLILPMERKMSLLKQDDQLAVTRSIKEGEEVKTGVTSFPWSSIKGFISEAANLVLLRVMAWRRMVPSNARFLTLDTEGKLCYLTYQNLGFQTIQVDHQQAEVFIVEQTVHAEEGIPMSCQYYLLSDGHLAKRIQVGSPGCCIITKMPILREEDEIEPRPVFEKKPLVWEEDMELYSKFLDRKEELRLGHASYLRQHPEAHALISDFLLFLLLRQPEDVVTFAAEFFGPFDPWRPSSPALGSSHRPNPFRSLEPEGDARSGAA", "length": 387 }, "evidence": [ { "id": "F1SRZ9", "url": "https://omabrowser.org/oma/group/F1SRZ9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" } ], "pmid": "" }, { "name": "actin cytoskeleton", "id": "GO:0015629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015629", "evidence": [ { "database": "UniProtKB", "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "actin filament polymerization", "id": "GO:0030041", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030041", "evidence": [ { "database": "UniProtKB", "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" } ], "pmid": "" }, { "name": "cilium organization", "id": "GO:0044782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044782", "evidence": [ { "database": "UniProtKB", "id": "F1SRZ9", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SRZ9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 398, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SRZ9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SRZ9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SRZ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SRZ9" }, { "id": "PF21772", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21772" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ciliogenesis-associated TTC17-interacting protein N-terminal", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 263, "start_aa": "Glu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS04-1", "uniprot_ac": "F1SS04", "uniprot_id": "F1SS04_PIG", "mass": { "chemical_mass": 39825.0, "monoisotopic_mass": 39825.0 }, "refseq": { "ac": "XP_020930942", "name": "C-X-C chemokine receptor type 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930942" }, "gene_names": [ { "name": "CXCR2", "type": "recommended", "evidence": [ { "id": "F1SS04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ] }, { "name": "CXCR2", "type": "synonym", "evidence": [ { "id": "XP_020930942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930942" } ] } ], "protein_names": [ { "name": "C-X-C chemokine receptor type 2", "type": "recommended", "evidence": [ { "id": "F1SS04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS04/entry#names_and_taxonomy" } ] }, { "name": "C-X-C chemokine receptor type 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020930942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930942" } ] }, { "name": "High affinity interleukin-8 receptor B", "type": "synonym", "evidence": [ { "id": "F1SS04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS04/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Receptor for interleukin-8 which is a powerful neutrophil chemotactic factor. Binding of IL-8 to the receptor causes activation of neutrophils. This response is mediated via a G-protein that activates a phosphatidylinositol-calcium second messenger system. Binds to IL-8 with high affinity. Also binds with high affinity to CXCL3, GRO/MGSA and NAP-2. Involved in the homeostatic wound healing response to tissue injury, a multistep cascade that guides neutrophil migration to necrotic sites while avoiding collateral damage of healthy tissues. Signals intravascular neutrophil chemotaxis to the injury site.", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04#function" }, { "database": "UniProtKB", "id": "ARBA00094292", "url": "https://www.uniprot.org/uniprotkb/ARBA00094292#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CXCR2", "url": "https://www.uniprot.org/uniprotkb/F1SS04", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000016184", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016184", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15178", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15178", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100124654", "url": "https://www.ncbi.nlm.nih.gov/gene/100124654", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "YSPCEIS", "url": "https://omabrowser.org/oma/group/YSPCEIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10489", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10489", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10489:SF689", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10489:SF689", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-380108", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380108", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020930942", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930942", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS04-1", "url": "https://www.uniprot.org/uniprotkb/F1SS04-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGFNFENYEGDDYNYSYSTDLPLILPDSAPCRPESLDINKYAVVVIYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLAMADLLFALTLPIWATSKAKGWIFGTPLCKVVSLLKEVNFYSGILLLACISMDRYLAIVHATRTLTQKRHWVKFICIGIWALSLVLALPIFIFRRAIHPPYSSPVCYEDMGANTTKWRMVMRVLPQTFGFLLPLLVMLFCYGLTLRTLFAAHMGQKHRAMRVIFAVVLVFLLCWLPYNLVLVADTLMRARVIAETCERRNDIGRALDATEILGFLHSCLNPLIYVFIGQKFRHGLLKIMAIHGLISKEYLVKDGRPSFVGSSSGNTSTTL", "length": 353, "header": "tr|F1SS04-1|F1SS04_PIG Isoform 1 of C-X-C chemokine receptor type 2 OS=Sus scrofa OX=9823 GN=CXCR2 PE=3 SV=3 CANONICAL=F1SS04-1" }, "isoforms": [ { "isoform_ac": "F1SS04-1", "url": "https://www.uniprot.org/uniprotkb/F1SS04/entry#F1SS04-1", "sequence": { "sequence": "MTGFNFENYEGDDYNYSYSTDLPLILPDSAPCRPESLDINKYAVVVIYALVFLLSLLGNSLVMLVILYSRVGRSVTDVYLLNLAMADLLFALTLPIWATSKAKGWIFGTPLCKVVSLLKEVNFYSGILLLACISMDRYLAIVHATRTLTQKRHWVKFICIGIWALSLVLALPIFIFRRAIHPPYSSPVCYEDMGANTTKWRMVMRVLPQTFGFLLPLLVMLFCYGLTLRTLFAAHMGQKHRAMRVIFAVVLVFLLCWLPYNLVLVADTLMRARVIAETCERRNDIGRALDATEILGFLHSCLNPLIYVFIGQKFRHGLLKIMAIHGLISKEYLVKDGRPSFVGSSSGNTSTTL", "length": 353, "header": "tr|F1SS04-1|F1SS04_PIG Isoform 1 of C-X-C chemokine receptor type 2 OS=Sus scrofa OX=9823 GN=CXCR2 PE=3 SV=3 CANONICAL=F1SS04-1" }, "locus": { "chromosome": "15", "start_pos": 120229310, "end_pos": 120228252, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017622.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017622.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017144.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017144.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-380108", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380108", "resource": "Reactome", "description": "Chemokine receptors bind chemokines" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3IMN7-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "Cxcr2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGEIRVDNFSIDYFFSGDIDSYNYSSDLPPTLPDAAPCHPENLEINRYAVVIIYVLVTLLSLLGNSLVMLVILYNRSTCSVTDVYLLNLAIADLLFALTLPVWAASKVNGWIFGTAMCKIFSFVKEVTFYSSVLLLACISMDRYLAIVHATSTLIQKRHLVKFVCITMWVLSVLVSLPILILRNIVKANSFTLVCYEDAGNNTTKWRMVLRFLPQTIGFLLPLLIMLFCYGSTLRTLFKAHMGQKHRAMRVIFAVVLVFLLCWLPYNLVLFSDTLMRTKKIQETCKRRNDIDRALQATEILGFLHSCLNPIIYAFIGQKFRYGLLKIMATYGLVSKEFLAKQGRPSFVGSSSGNTSTTL", "length": 359 }, "evidence": [ { "id": "F1SS04", "url": "https://omabrowser.org/oma/group/F1SS04/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P35343-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "Cxcr2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGEFKVDKFNIEDFFSGDLDIFNYSSGMPSILPDAVPCHSENLEINSYAVVVIYVLVTLLSLVGNSLVMLVILYNRSTCSVTDVYLLNLAIADLFFALTLPVWAASKVNGWTFGSTLCKIFSYVKEVTFYSSVLLLACISMDRYLAIVHATSTLIQKRHLVKFVCIAMWLLSVILALPILILRNPVKVNLSTLVCYEDVGNNTSRLRVVLRILPQTFGFLVPLLIMLFCYGFTLRTLFKAHMGQKHRAMRVIFAVVLVFLLCWLPYNLVLFTDTLMRTKLIKETCERRDDIDKALNATEILGFLHSCLNPIIYAFIGQKFRHGLLKIMATYGLVSKEFLAKEGRPSFVSSSSANTSTTL", "length": 359 }, "evidence": [ { "id": "F1SS04", "url": "https://omabrowser.org/oma/group/F1SS04/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P35407-1", "protein_name": "C-X-C chemokine receptor type 2", "gene_name": "Cxcr2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIRVDNFSLEDFFSGDIDSYNYSSDPPFTLSDAAPCPSANLDINRYAVVVIYVLVTLLSLVGNSLVMLVILYNRSTCSVTDVYLLNLAIADLFFALTLPVWAASKVNGWIFGSFLCKVFSFLQEITFYSSVLLLACISMDRYLAIVHATSTLIQKRHLVKFVCITMWFLSLVLSLPIFILRTTVKANPSTVVCYENIGNNTSKWRVVLRILPQTYGFLLPLLIMLFCYGFTLRTLFKAHMGQKHRAMRVIFAVVLVFLLCWLPYNIVLFTDTLMRTKLIKETCERQNEINKALEATEILGFLHSCLNPIIYAFIGQKFRHGLLKIMANYGLVSKEFLAKEGRPSFVGSSSANTSTTL", "length": 359 }, "evidence": [ { "id": "F1SS04", "url": "https://omabrowser.org/oma/group/F1SS04/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "pmid": "" }, { "name": "positive regulation of cytosolic calcium ion concentration", "id": "GO:0007204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007204", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "pmid": "" }, { "name": "calcium-mediated signaling", "id": "GO:0019722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019722", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "pmid": "" }, { "name": "neutrophil chemotaxis", "id": "GO:0030593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030593", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "C-C chemokine receptor activity", "id": "GO:0016493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016493", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "pmid": "" }, { "name": "C-X-C chemokine receptor activity", "id": "GO:0016494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016494", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "pmid": "" }, { "name": "C-C chemokine binding", "id": "GO:0019957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019957", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "pmid": "" }, { "name": "interleukin-8 binding", "id": "GO:0019959", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019959", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SS04", "url": "https://www.uniprot.org/uniprotkb/F1SS04" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 348, "end_pos": 350, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS04" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 307, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 }, { "start_pos": 196, "end_pos": 198 }, { "start_pos": 348, "end_pos": 350 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS05-1", "uniprot_ac": "F1SS05", "uniprot_id": "F1SS05_PIG", "mass": { "chemical_mass": 40056.0, "monoisotopic_mass": 40056.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100515345", "type": "recommended", "evidence": [ { "id": "F1SS05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ] } ], "protein_names": [ { "name": "C-X-C chemokine receptor type 2", "type": "recommended", "evidence": [ { "id": "F1SS05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS05/entry#names_and_taxonomy" } ] }, { "name": "High affinity interleukin-8 receptor B", "type": "synonym", "evidence": [ { "id": "F1SS05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS05/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Receptor for interleukin-8 which is a powerful neutrophil chemotactic factor. Binding of IL-8 to the receptor causes activation of neutrophils. This response is mediated via a G-protein that activates a phosphatidylinositol-calcium second messenger system. Binds to IL-8 with high affinity. Also binds with high affinity to CXCL3, GRO/MGSA and NAP-2. Involved in the homeostatic wound healing response to tissue injury, a multistep cascade that guides neutrophil migration to necrotic sites while avoiding collateral damage of healthy tissues. Signals intravascular neutrophil chemotaxis to the injury site.", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05#function" }, { "database": "UniProtKB", "id": "ARBA00094292", "url": "https://www.uniprot.org/uniprotkb/ARBA00094292#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100515345", "url": "https://www.uniprot.org/uniprotkb/F1SS05", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000016183", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016183", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15178", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15178", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10489", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10489", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10489:SF689", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10489:SF689", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-380108", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380108", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS05-1", "url": "https://www.uniprot.org/uniprotkb/F1SS05-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAVFDDKDLLELFGDDFENFTGTPPTDEHYYSPCRIDTESLNKYAVVVIYALVFLLSLLGNSLVMLVIYSRVGRSVTDVYLLNLAMADLLFALTLPIWATSKAKGWIFGTPLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHWVKFICTGIWALSLVLALPIFIFREAYHPPYSSPVCYEDLGANTTKWRMVMRVLPQTFGFLLPLLVMLFCYGLTLRTLFAAHMGQKHRAMRVIFAVVLVFLLCWLPYNLVLVADTLMRARVIAETCERRNDIGRALDATEILGFLHSCLNPLIYVFIGQKFRHGLLKIMAIHGLISKEYLVKDGRPSFVGSSSGNTSTTL", "length": 355, "header": "tr|F1SS05-1|F1SS05_PIG Isoform 1 of C-X-C chemokine receptor type 2 OS=Sus scrofa OX=9823 GN=LOC100515345 PE=3 SV=5 CANONICAL=F1SS05-1" }, "isoforms": [ { "isoform_ac": "F1SS05-1", "url": "https://www.uniprot.org/uniprotkb/F1SS05/entry#F1SS05-1", "sequence": { "sequence": "MTAVFDDKDLLELFGDDFENFTGTPPTDEHYYSPCRIDTESLNKYAVVVIYALVFLLSLLGNSLVMLVIYSRVGRSVTDVYLLNLAMADLLFALTLPIWATSKAKGWIFGTPLCKVVSLLKEVNFYSGILLLACISVDRYLAIVHATRTLTQKRHWVKFICTGIWALSLVLALPIFIFREAYHPPYSSPVCYEDLGANTTKWRMVMRVLPQTFGFLLPLLVMLFCYGLTLRTLFAAHMGQKHRAMRVIFAVVLVFLLCWLPYNLVLVADTLMRARVIAETCERRNDIGRALDATEILGFLHSCLNPLIYVFIGQKFRHGLLKIMAIHGLISKEYLVKDGRPSFVGSSSGNTSTTL", "length": 355, "header": "tr|F1SS05-1|F1SS05_PIG Isoform 1 of C-X-C chemokine receptor type 2 OS=Sus scrofa OX=9823 GN=LOC100515345 PE=3 SV=5 CANONICAL=F1SS05-1" }, "locus": { "chromosome": "15", "start_pos": 120259518, "end_pos": 120258452, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000107117.1", "url": "https://www.ensembl.org/id/ENSSSCT00000107117.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081511.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081511.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-380108", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380108", "resource": "Reactome", "description": "Chemokine receptors bind chemokines" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "pmid": "" }, { "name": "positive regulation of cytosolic calcium ion concentration", "id": "GO:0007204", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007204", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "pmid": "" }, { "name": "calcium-mediated signaling", "id": "GO:0019722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019722", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "pmid": "" }, { "name": "neutrophil chemotaxis", "id": "GO:0030593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030593", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "C-C chemokine receptor activity", "id": "GO:0016493", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016493", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "pmid": "" }, { "name": "C-X-C chemokine receptor activity", "id": "GO:0016494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016494", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "pmid": "" }, { "name": "C-C chemokine binding", "id": "GO:0019957", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019957", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "F1SS05", "url": "https://www.uniprot.org/uniprotkb/F1SS05" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 20, "end_pos": 22, "annotation": "n_glycosylation_sequon" }, { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS05" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 309, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 198, "end_pos": 200 }, { "start_pos": 20, "end_pos": 22 }, { "start_pos": 350, "end_pos": 352 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS06-1", "uniprot_ac": "F1SS06", "uniprot_id": "F1SS06_PIG", "mass": { "chemical_mass": 64119.0, "monoisotopic_mass": 64119.0 }, "refseq": { "ac": "XP_020930938", "name": "RUN and FYVE domain-containing protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930938" }, "gene_names": [ { "name": "RUFY4", "type": "recommended", "evidence": [ { "id": "F1SS06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ] }, { "name": "RUFY4", "type": "synonym", "evidence": [ { "id": "XP_020930938", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930938" } ] } ], "protein_names": [ { "name": "RUN and FYVE domain-containing protein 4", "type": "recommended", "evidence": [ { "id": "F1SS06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS06/entry#names_and_taxonomy" } ] }, { "name": "RUN and FYVE domain-containing protein 4", "type": "synonym", "evidence": [ { "id": "XP_020930938", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930938" } ] } ], "function": [ { "annotation": "ARL8 effector that promotes the coupling of endolysosomes to dynein-dynactin for retrograde transport along microtubules. Acts by binding both GTP-bound ARL8 and dynein-dynactin. In nonneuronal cells, promotes concentration of endolysosomes in the juxtanuclear area. In hippocampal neurons, drives retrograde transport of endolysosomes from the axon to the soma. Positive regulator of macroautophagy in dendritic cells. Increases autophagic flux, probably by stimulating both autophagosome formation and facilitating tethering with lysosomes. Binds to phosphatidylinositol 3-phosphate (PtdIns3P) through its FYVE-type zinc finger. Positive regulator of osteosclast bone-resorbing activity, possibly by promoting late endosome-lysosome fusion by acting as an adapter protein between RAB7A on late endosomes and LAMP2 on primary lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06#function" }, { "database": "UniProtKB", "id": "ARBA00059075", "url": "https://www.uniprot.org/uniprotkb/ARBA00059075#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RUFY4", "url": "https://www.uniprot.org/uniprotkb/F1SS06", "locus": { "chromosome": "15", "start_pos": 120213462, "end_pos": 120192235, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016182", "url": "https://www.ensembl.org/id/ENSSSCG00000016182" } ] } } ], "crossref": [ { "id": "F1SS06", "url": "https://alphafold.ebi.ac.uk/entry/F1SS06", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016182", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016182", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15745", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15745", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156394", "url": "https://www.ncbi.nlm.nih.gov/gene/100156394", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156394", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156394", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SS06", "url": "https://www.orthodb.org/?gene=F1SS06", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47732", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47732", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47732:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47732:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25366", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25366", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020930938", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020930938", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS06-1", "url": "https://www.uniprot.org/uniprotkb/F1SS06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEEVAVIKITRDLKAAVSTILQGYGGGKQPVTDASAELHRLCGCLELLLQFDQKEQKSFLRARKDYWDFLCTALWRQRGDTEPVRFVHSQDKLKTPLGKGRAFIRFCLAHGQLAESLQLCLLNPELTREWYGPRSPLVCPELREDILDALYALNGVAFDLDLQRPDLDGAWPMFSESWCSNSRQTQGRRPRKIKDSPKEISATHGGPTGAHPKKPHASQASHLQDTPREEQLDGFSRSQQHNHLPPFGEKKKDAPRGLGPPQSIWGPEGEELQQDQEKGAPGTGICLENSTPSSKGQEEGTKGALKEVMGAEAKGRGFLLGAEGQRTAEGTHDQETEWSHTHRLLASSPKGTVGDTESGNRQEGEVLSIPGEPWLLQGLGTKEGSTMEKPQEQTGVTDVPRMEEQAEMALQDVVKSLRHGLQKTKEQVRHQEQLLKEQEEELKTLQEQLSRCQEERARLQAELEQKQQEAERRDAMYEEELGGQRDLVCAMKRRVLELIQEKDNLWQKIQHLSSLVPGCCVVCSKLFGRLSRRYPCRLCGGLVCHACSVDYKKRERHCPPCSQRREAQGL", "length": 571, "header": "tr|F1SS06-1|F1SS06_PIG Isoform 1 of RUN and FYVE domain-containing protein 4 OS=Sus scrofa OX=9823 GN=RUFY4 PE=4 SV=4 CANONICAL=F1SS06-1" }, "isoforms": [ { "isoform_ac": "F1SS06-1", "url": "https://www.uniprot.org/uniprotkb/F1SS06/entry#F1SS06-1", "sequence": { "sequence": "MAEEVAVIKITRDLKAAVSTILQGYGGGKQPVTDASAELHRLCGCLELLLQFDQKEQKSFLRARKDYWDFLCTALWRQRGDTEPVRFVHSQDKLKTPLGKGRAFIRFCLAHGQLAESLQLCLLNPELTREWYGPRSPLVCPELREDILDALYALNGVAFDLDLQRPDLDGAWPMFSESWCSNSRQTQGRRPRKIKDSPKEISATHGGPTGAHPKKPHASQASHLQDTPREEQLDGFSRSQQHNHLPPFGEKKKDAPRGLGPPQSIWGPEGEELQQDQEKGAPGTGICLENSTPSSKGQEEGTKGALKEVMGAEAKGRGFLLGAEGQRTAEGTHDQETEWSHTHRLLASSPKGTVGDTESGNRQEGEVLSIPGEPWLLQGLGTKEGSTMEKPQEQTGVTDVPRMEEQAEMALQDVVKSLRHGLQKTKEQVRHQEQLLKEQEEELKTLQEQLSRCQEERARLQAELEQKQQEAERRDAMYEEELGGQRDLVCAMKRRVLELIQEKDNLWQKIQHLSSLVPGCCVVCSKLFGRLSRRYPCRLCGGLVCHACSVDYKKRERHCPPCSQRREAQGL", "length": 571, "header": "tr|F1SS06-1|F1SS06_PIG Isoform 1 of RUN and FYVE domain-containing protein 4 OS=Sus scrofa OX=9823 GN=RUFY4 PE=4 SV=4 CANONICAL=F1SS06-1" }, "locus": { "chromosome": "15", "start_pos": 120213164, "end_pos": 120193917, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017620.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017620.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017142.4", "url": "https://www.ensembl.org/id/ENSSSCP00000017142.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156394", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156394", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "multivesicular body-lysosome fusion", "id": "GO:0061763", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061763", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" }, { "name": "autophagosome assembly", "id": "GO:0000045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000045", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" }, { "name": "positive regulation of bone resorption", "id": "GO:0045780", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045780", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" }, { "name": "positive regulation of macroautophagy", "id": "GO:0016239", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016239", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" }, { "name": "cellular response to interleukin-4", "id": "GO:0071353", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071353", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" }, { "name": "positive regulation of exocytosis", "id": "GO:0045921", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045921", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" }, { "name": "positive regulation of retrograde axon cargo transport", "id": "GO:2001019", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001019", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" }, { "name": "phosphatidylinositol-3-phosphate binding", "id": "GO:0032266", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032266", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" }, { "name": "dynactin binding", "id": "GO:0034452", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034452", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" }, { "name": "endolysosome", "id": "GO:0036019", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036019", "evidence": [ { "database": "UniProtKB", "id": "F1SS06", "url": "https://www.uniprot.org/uniprotkb/F1SS06" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SS06-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 571, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SS06-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SS06" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS06" }, { "id": "PS50178", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50178" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FYVE-type", "eco_id": "ECO_0000259", "start_pos": 521, "end_pos": 567, "start_aa": "Cys", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SS06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS06" }, { "id": "PS50826", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50826" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RUN", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 166, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 290, "end_pos": 292 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS53-1", "uniprot_ac": "F1SS53", "uniprot_id": "F1SS53_PIG", "mass": { "chemical_mass": 60435.0, "monoisotopic_mass": 60435.0 }, "refseq": {}, "gene_names": [ { "name": "ZNF18", "type": "recommended", "evidence": [ { "id": "F1SS53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS53" } ] } ], "protein_names": [ { "name": "Zinc finger protein 18", "type": "synonym", "evidence": [ { "id": "F1SS53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS53/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS53", "url": "https://www.uniprot.org/uniprotkb/F1SS53" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF18", "url": "https://www.uniprot.org/uniprotkb/F1SS53", "locus": { "chromosome": "12", "start_pos": 56359738, "end_pos": 56376835, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018014", "url": "https://www.ensembl.org/id/ENSSSCG00000018014" } ] } } ], "crossref": [ { "id": "F1SS53", "url": "https://alphafold.ebi.ac.uk/entry/F1SS53", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000018014", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018014", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038269", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038269", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF190", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF190", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-212436", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SS53", "url": "https://www.uniprot.org/uniprotkb/F1SS53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS53-1", "url": "https://www.uniprot.org/uniprotkb/F1SS53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPMEPGQALVLPLPLAKAEESPFPGPDAAPPGEPSSPETACQLFRQFPYQVMSGPHTLRQLRKLCFQWLQPELHTKEQILEMLLLEQFLTILPGEIQMWVRKQCPGSGEEAVTLVESLKEDPQRLLQWISIQVLGQEVSSEKVIAASCQVGGMEPHPEVPQEQGLQPPASGPGEPPSCIVKEESDSDQELVVAASQLPAQPEERPTRDEDLGASLLQAAPQAQWSHLDSTQKEQYWDLMLETYGKMVSGGISNPKPDLTSPAGYGAELAGLHLHGSEKIPRPTCTGDRQENDKENLNLENCRDQEPPASGEPPSQASVGGLFGEDQLKHLAAEENPPEAQESPQGEWPGAQLSPQERSAGKRQSPRLPRAPPGEPSVQGVEERREGPQRAQPRAPMAQRVPTCRECGRTFYRNPQLIFHQRTHTTAKTSFQCPTCKKAFPRSSNLVKHQRTHTGEKPCKCDYCGKSFSDFSGLCYHKKTHTGEKPFKCPICEKSFIQRSNFNRHQRVHTGEKPYKCSLCGKSFSWRSSLDKHQRSHLGKKRFQ", "length": 543, "header": "tr|F1SS53-1|F1SS53_PIG Isoform 1 of Zinc finger protein 18 OS=Sus scrofa OX=9823 GN=ZNF18 PE=3 SV=4 CANONICAL=F1SS53-1" }, "isoforms": [ { "isoform_ac": "F1SS53-1", "url": "https://www.uniprot.org/uniprotkb/F1SS53/entry#F1SS53-1", "sequence": { "sequence": "MPMEPGQALVLPLPLAKAEESPFPGPDAAPPGEPSSPETACQLFRQFPYQVMSGPHTLRQLRKLCFQWLQPELHTKEQILEMLLLEQFLTILPGEIQMWVRKQCPGSGEEAVTLVESLKEDPQRLLQWISIQVLGQEVSSEKVIAASCQVGGMEPHPEVPQEQGLQPPASGPGEPPSCIVKEESDSDQELVVAASQLPAQPEERPTRDEDLGASLLQAAPQAQWSHLDSTQKEQYWDLMLETYGKMVSGGISNPKPDLTSPAGYGAELAGLHLHGSEKIPRPTCTGDRQENDKENLNLENCRDQEPPASGEPPSQASVGGLFGEDQLKHLAAEENPPEAQESPQGEWPGAQLSPQERSAGKRQSPRLPRAPPGEPSVQGVEERREGPQRAQPRAPMAQRVPTCRECGRTFYRNPQLIFHQRTHTTAKTSFQCPTCKKAFPRSSNLVKHQRTHTGEKPCKCDYCGKSFSDFSGLCYHKKTHTGEKPFKCPICEKSFIQRSNFNRHQRVHTGEKPYKCSLCGKSFSWRSSLDKHQRSHLGKKRFQ", "length": 543, "header": "tr|F1SS53-1|F1SS53_PIG Isoform 1 of Zinc finger protein 18 OS=Sus scrofa OX=9823 GN=ZNF18 PE=3 SV=4 CANONICAL=F1SS53-1" }, "locus": { "chromosome": "12", "start_pos": 56376835, "end_pos": 56360573, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019609.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019609.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019090.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019090.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SS53", "url": "https://www.uniprot.org/uniprotkb/F1SS53" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-212436", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212436", "resource": "Reactome", "description": "Generic Transcription Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SS53", "url": "https://www.uniprot.org/uniprotkb/F1SS53" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SS53", "url": "https://www.uniprot.org/uniprotkb/F1SS53" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SS53", "url": "https://www.uniprot.org/uniprotkb/F1SS53" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SS53", "url": "https://www.uniprot.org/uniprotkb/F1SS53" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SS53", "url": "https://www.uniprot.org/uniprotkb/F1SS53" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SS53", "url": "https://www.uniprot.org/uniprotkb/F1SS53" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SS53-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 543, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SS53-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SS53" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS53" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 401, "end_pos": 428, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SS53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS53" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 210, "end_pos": 281, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SS53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS53" }, { "id": "PS50804", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50804" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SCAN box", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 121, "start_aa": "Gln", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SS66-1", "uniprot_ac": "F1SS66", "uniprot_id": "F1SS66_PIG", "mass": { "chemical_mass": 220923.0, "monoisotopic_mass": 220923.0 }, "refseq": {}, "gene_names": [ { "name": "MYH13", "type": "recommended", "evidence": [ { "id": "F1SS66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ] } ], "protein_names": [ { "name": "Myosin heavy chain 13", "type": "synonym", "evidence": [ { "id": "F1SS66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS66/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MYH13", "url": "https://www.uniprot.org/uniprotkb/F1SS66", "locus": { "chromosome": "12", "start_pos": 55046888, "end_pos": 55103400, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024416", "url": "https://www.ensembl.org/id/ENSSSCG00000024416" } ] } } ], "crossref": [ { "id": "ENSSSCG00000024416", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024416", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd14923", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14923", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002928", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002928", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042702", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042702", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615:SF64", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615:SF64", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00063", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00063", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01576", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01576", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02736", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02736", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SS66-1", "url": "https://www.uniprot.org/uniprotkb/F1SS66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSDAEMAVFGEAAPYLRKSEKERIEAQNRPFDSKKACFAVDDKELYVKGMIQSRENDKVTVKTLDDRTLTLNSDQVFPMNPPKFDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRDNQSILITGESGAGKTVNTKRVIQYFATIAVTGDKKKEQQPGKMQGTLEDQIIQANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLSSERSYHIFYQIMSNKKPELIDLLLISTNPFDFPFVSQGEVTVASIDDSEELLATDNAIDILGFSSEEKVGIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAGYLMGLNSAEMLKGLCCPRVKVGNEYVTKGQNVQQVDGTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDQHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSLKLLSFLFSNYAGAEAGDSGGSKKGGKKKGSSFQTVSAVFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGVMDHHLVMHQLRCNGVLEGIRICRKGFPSRILYADFKQRYRILNASAIPEGQFIDSKNASEKLLNSIDVDREQYRFGHTKVFFKAGLLGLLEEMRDEKLVTLMTRTQAVCRGYLMRMEFKKMLERRDSIFCIQYNIRAFMNVKHWPWMNLFFKIKPLLKSAEAEKEMATMKEDFERTKEELARSEARRKELEEKMVTLLQEKNDLQLQVQSETENLMDAEERCEGLIKSKIQLEAKVKELNERLEEEEEVNSELVAKKRNLEDKCSSLKRDIDDLELTLAKVEKEKHATENKVKNLSEEMTALEGNLSKLTKEKKSLQEAHQQTLDDLQVEEDKVNGLIKINVKLEQQADDLEGCLEQEKKLRADLERAKRKLEGDLKMCQESLVDLENDKQQAEEKLKKKEFEISQLQTKIDDEQVHSLQLQKKIKELQARTEELEEEVEAEHTLRGKIEKQRADLARELEEISERLEEASGATSAQIELNKKREAEFQKLRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSELKMEIDDLASNMETVSKSKSNVERVCRTVEDQFNEIKAKDEQQTQLIHDLNMQKARLQTQNGELSHQVEEKEVLISQLTKNKQALTQQLEELKRQLEEETKAKNALAHALQSSRHDCDLLREQYEEEQEAKAELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEENTEAVSAKCASLEKTKQRLQGEVDDLMLDLERANTACASLDKKQRNFDKVLAEWKQKLDESQAELEAAQKESRSLSTEIFKMRNAYEEVVDQLETLRRENKNLQEEISDLTTQIAETSKNLQEVEKTKKQAEQEKSDLQAALEEMEGSLEHEESKILRVQLELNQVKSELDRKIAEKDEEIEQLKKNSQRAAEATQSVLDAEIRSRNDALRLKKKMEGDLNEMEIQLGHSNRQVAETQKHLRAVQGQLKDSQLHLDDAQRSNEGLKEQLAIVERRNGLLLEELEEMKVALEQTERTRKLSEQELLDASDRVQLLHSQNTSLINTKKKLEADIAQCQAEVENSIQESKNAEEKAKKAITDAAMMAEELKKEQDTCAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLENRVRELESELDAEQKRGAEALKGAHRYERKVKEMTYQAEEDRKNILRLQDLVDKLQAKVKAYKRQAEEAEEQANTQLSRCRRVQHELEEAEERADIAESQVNKLRAKSRDVGAQKMEE", "length": 1920, "header": "tr|F1SS66-1|F1SS66_PIG Isoform 1 of Myosin heavy chain 13 OS=Sus scrofa OX=9823 GN=MYH13 PE=3 SV=5 CANONICAL=F1SS66-1" }, "isoforms": [ { "isoform_ac": "F1SS66-1", "url": "https://www.uniprot.org/uniprotkb/F1SS66/entry#F1SS66-1", "sequence": { "sequence": "MSSDAEMAVFGEAAPYLRKSEKERIEAQNRPFDSKKACFAVDDKELYVKGMIQSRENDKVTVKTLDDRTLTLNSDQVFPMNPPKFDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPEVVTAYRGKKRQEAPPHIFSISDNAYQFMLTDRDNQSILITGESGAGKTVNTKRVIQYFATIAVTGDKKKEQQPGKMQGTLEDQIIQANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADIETYLLEKSRVTFQLSSERSYHIFYQIMSNKKPELIDLLLISTNPFDFPFVSQGEVTVASIDDSEELLATDNAIDILGFSSEEKVGIYKLTGAVMHYGNMKFKQKQREEQAEPDGTEVADKAGYLMGLNSAEMLKGLCCPRVKVGNEYVTKGQNVQQVDGTRINQQLDTKQPRQYFIGVLDIAGFEIFDFNSLEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDQHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNIAGWLDKNKDPLNETVVGLYQKSSLKLLSFLFSNYAGAEAGDSGGSKKGGKKKGSSFQTVSAVFRENLNKLMTNLRSTHPHFVRCLIPNETKTPGVMDHHLVMHQLRCNGVLEGIRICRKGFPSRILYADFKQRYRILNASAIPEGQFIDSKNASEKLLNSIDVDREQYRFGHTKVFFKAGLLGLLEEMRDEKLVTLMTRTQAVCRGYLMRMEFKKMLERRDSIFCIQYNIRAFMNVKHWPWMNLFFKIKPLLKSAEAEKEMATMKEDFERTKEELARSEARRKELEEKMVTLLQEKNDLQLQVQSETENLMDAEERCEGLIKSKIQLEAKVKELNERLEEEEEVNSELVAKKRNLEDKCSSLKRDIDDLELTLAKVEKEKHATENKVKNLSEEMTALEGNLSKLTKEKKSLQEAHQQTLDDLQVEEDKVNGLIKINVKLEQQADDLEGCLEQEKKLRADLERAKRKLEGDLKMCQESLVDLENDKQQAEEKLKKKEFEISQLQTKIDDEQVHSLQLQKKIKELQARTEELEEEVEAEHTLRGKIEKQRADLARELEEISERLEEASGATSAQIELNKKREAEFQKLRRDLEEATLQHEATAAALRKKHADSVAELGEQIDNLQRVKQKLEKEKSELKMEIDDLASNMETVSKSKSNVERVCRTVEDQFNEIKAKDEQQTQLIHDLNMQKARLQTQNGELSHQVEEKEVLISQLTKNKQALTQQLEELKRQLEEETKAKNALAHALQSSRHDCDLLREQYEEEQEAKAELQRALSKANSEVAQWRTKYETDAIQRTEELEEAKKKLAQRLQEAEENTEAVSAKCASLEKTKQRLQGEVDDLMLDLERANTACASLDKKQRNFDKVLAEWKQKLDESQAELEAAQKESRSLSTEIFKMRNAYEEVVDQLETLRRENKNLQEEISDLTTQIAETSKNLQEVEKTKKQAEQEKSDLQAALEEMEGSLEHEESKILRVQLELNQVKSELDRKIAEKDEEIEQLKKNSQRAAEATQSVLDAEIRSRNDALRLKKKMEGDLNEMEIQLGHSNRQVAETQKHLRAVQGQLKDSQLHLDDAQRSNEGLKEQLAIVERRNGLLLEELEEMKVALEQTERTRKLSEQELLDASDRVQLLHSQNTSLINTKKKLEADIAQCQAEVENSIQESKNAEEKAKKAITDAAMMAEELKKEQDTCAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLENRVRELESELDAEQKRGAEALKGAHRYERKVKEMTYQAEEDRKNILRLQDLVDKLQAKVKAYKRQAEEAEEQANTQLSRCRRVQHELEEAEERADIAESQVNKLRAKSRDVGAQKMEE", "length": 1920, "header": "tr|F1SS66-1|F1SS66_PIG Isoform 1 of Myosin heavy chain 13 OS=Sus scrofa OX=9823 GN=MYH13 PE=3 SV=5 CANONICAL=F1SS66-1" }, "locus": { "chromosome": "12", "start_pos": 55103400, "end_pos": 55046975, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019595.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019595.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019076.5", "url": "https://www.ensembl.org/id/ENSSSCP00000019076.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "pmid": "" }, { "name": "microfilament motor activity", "id": "GO:0000146", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000146", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "pmid": "" }, { "name": "myosin filament", "id": "GO:0032982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032982", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "pmid": "" }, { "name": "myofibril", "id": "GO:0030016", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030016", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "pmid": "" }, { "name": "myosin II complex", "id": "GO:0016460", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016460", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "muscle contraction", "id": "GO:0006936", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006936", "evidence": [ { "database": "UniProtKB", "id": "F1SS66", "url": "https://www.uniprot.org/uniprotkb/F1SS66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1706, "end_pos": 1708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 586, "end_pos": 588, "annotation": "n_glycosylation_sequon" }, { "start_pos": 662, "end_pos": 664, "annotation": "n_glycosylation_sequon" }, { "start_pos": 712, "end_pos": 714, "annotation": "n_glycosylation_sequon" }, { "start_pos": 726, "end_pos": 728, "annotation": "n_glycosylation_sequon" }, { "start_pos": 963, "end_pos": 965, "annotation": "n_glycosylation_sequon" }, { "start_pos": 974, "end_pos": 976, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SS66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS66" }, { "id": "PS51844", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51844" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin N-terminal SH3-like", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 82, "start_aa": "Asp", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SS66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SS66" }, { "id": "PS51456", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51456" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin motor", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 764, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1706, "end_pos": 1708 }, { "start_pos": 172, "end_pos": 174 }, { "start_pos": 242, "end_pos": 244 }, { "start_pos": 463, "end_pos": 465 }, { "start_pos": 586, "end_pos": 588 }, { "start_pos": 662, "end_pos": 664 }, { "start_pos": 712, "end_pos": 714 }, { "start_pos": 726, "end_pos": 728 }, { "start_pos": 963, "end_pos": 965 }, { "start_pos": 974, "end_pos": 976 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSA0-1", "uniprot_ac": "F1SSA0", "uniprot_id": "F1SSA0_PIG", "mass": { "chemical_mass": 39732.0, "monoisotopic_mass": 39732.0 }, "refseq": { "ac": "XP_001928046", "name": "bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928046" }, "gene_names": [ { "name": "BNIPL", "type": "recommended", "evidence": [ { "id": "F1SSA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ] }, { "name": "BNIPL", "type": "synonym", "evidence": [ { "id": "XP_001928046", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928046" } ] } ], "protein_names": [ { "name": "Bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein", "type": "recommended", "evidence": [ { "id": "F1SSA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA0/entry#names_and_taxonomy" } ] }, { "name": "bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein", "type": "synonym", "evidence": [ { "id": "XP_001928046", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928046" } ] } ], "function": [ { "annotation": "May be a bridge molecule between BCL2 and ARHGAP1/CDC42 in promoting cell death.", "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0#function" }, { "database": "UniProtKB", "id": "ARBA00055513", "url": "https://www.uniprot.org/uniprotkb/ARBA00055513#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BNIPL", "url": "https://www.uniprot.org/uniprotkb/F1SSA0", "locus": { "chromosome": "4", "start_pos": 98183540, "end_pos": 98193242, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006640", "url": "https://www.ensembl.org/id/ENSSSCG00000006640" } ] } } ], "crossref": [ { "id": "F1SSA0", "url": "https://alphafold.ebi.ac.uk/entry/F1SSA0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006640", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006640", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155100", "url": "https://www.ncbi.nlm.nih.gov/gene/100155100", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155100", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155100", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NYPYIME", "url": "https://omabrowser.org/oma/group/NYPYIME/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSA0", "url": "https://www.orthodb.org/?gene=F1SSA0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12112:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12112:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12496", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12496", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13716", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13716", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001928046", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001928046", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSA0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTLQEAGEKTLDLGVRENAETAVPEASLRLGGLELQEEWQDEEFPRLLPEEADPSEDPENPKGDSQTAPGTPSTLALCGQRPMRKRLTAPELQLNLTEGPGDNGASSTHSVPSSPDGSSDLEVDELETPSDSEQLDSGHEFEWEDDLPRAEDPGASEAAERLGRGCVWDVAGEDGHHWRVFRTGQREQRVDMTVIEPYKKVLSHGGYHGDGLNAVILFASCYLPRSSIPNYTYVMEHLFRYMVGTLELLVAENYLLVHLSGGTNRAQVPPLSWLRQCYHTLDGRLRKNLRALVVVHATWYVKAFLALLRPFISSKFTRKIRFLNSLGELAQLISMDQVHIPEAVRQLDQDLHGSGGT", "length": 358, "header": "tr|F1SSA0-1|F1SSA0_PIG Isoform 1 of Bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein OS=Sus scrofa OX=9823 GN=BNIPL PE=4 SV=1 CANONICAL=F1SSA0-1" }, "isoforms": [ { "isoform_ac": "F1SSA0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSA0/entry#F1SSA0-1", "sequence": { "sequence": "MGTLQEAGEKTLDLGVRENAETAVPEASLRLGGLELQEEWQDEEFPRLLPEEADPSEDPENPKGDSQTAPGTPSTLALCGQRPMRKRLTAPELQLNLTEGPGDNGASSTHSVPSSPDGSSDLEVDELETPSDSEQLDSGHEFEWEDDLPRAEDPGASEAAERLGRGCVWDVAGEDGHHWRVFRTGQREQRVDMTVIEPYKKVLSHGGYHGDGLNAVILFASCYLPRSSIPNYTYVMEHLFRYMVGTLELLVAENYLLVHLSGGTNRAQVPPLSWLRQCYHTLDGRLRKNLRALVVVHATWYVKAFLALLRPFISSKFTRKIRFLNSLGELAQLISMDQVHIPEAVRQLDQDLHGSGGT", "length": 358, "header": "tr|F1SSA0-1|F1SSA0_PIG Isoform 1 of Bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein OS=Sus scrofa OX=9823 GN=BNIPL PE=4 SV=1 CANONICAL=F1SSA0-1" }, "locus": { "chromosome": "4", "start_pos": 98193043, "end_pos": 98184143, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007276.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007276.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007081.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007081.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 72, "start_aa": "Thr", "end_pos": 72, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr72", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155100", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155100", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A8DZD4-1", "protein_name": "Bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein", "gene_name": "bnipl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGTYSDQREAYMQNGHTENSRTSDFIPDMELREEWQDEEFPRPLPEDTHSPGDEEESAGAEGKKPVPPTSLALTGNTVRKKRLVAPTLSLTLDKTSTDRSLKSDEFEASALSPSPDDDLDMDINLEALETPSDSESYNFPESMHDLEWEDDLPRMGKASIRKPSLLEHAEMGHLELDQVDDYGRRWRHFHIGGQDYQVNMSVLEPYLQVLSHGGYYGDGSTAIIMFTSCYLPENTTEHYEYVMDNLFRYIIGTLDLMVSENYILVYLCGMAPRNKMPGIKWLRQCYMSIDRRLRKDLKGLFVVHPAWYVRALITVIKPFISEKFSRKMRFIHSLQELAEFVPVEQLQIPDCIREYDTQLNR", "length": 361 }, "evidence": [ { "id": "F1SSA0", "url": "https://omabrowser.org/oma/group/F1SSA0/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7Z465-1", "protein_name": "Bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein", "gene_name": "BNIPL", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGTIQEAGKKTDVGVREIAEAPELGAALRHGELELKEEWQDEEFPRLLPEEAGTSEDPEDPKGDSQAAAGTPSTLALCGQRPMRKRLSAPELRLSLTKGPGNDGASPTQSAPSSPDGSSDLEIDELETPSDSEQLDSGHEFEWEDELPRAEGLGTSETAERLGRGCMWDVTGEDGHHWRVFRMGPREQRVDMTVIEPYKKVLSHGGYHGDGLNAVILFASCYLPRSSIPNYTYVMEHLFRYMVGTLELLVAENYLLVHLSGGTSRAQVPPLSWIRQCYRTLDRRLRKNLRALVVVHATWYVKAFLALLRPFISSKFTRKIRFLDSLGELAQLISLDQVHIPEAVRQLDRDLHGSGGT", "length": 357 }, "evidence": [ { "id": "F1SSA0", "url": "https://omabrowser.org/oma/group/F1SSA0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99JU7-1", "protein_name": "Bcl-2/adenovirus E1B 19 kDa-interacting protein 2-like protein", "gene_name": "Bnipl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLGELELREEWQDEEFPRLLPEEPGSPGDPEDPQRGSQAGTPSSLALCGQRPMRKRLSAPEWQLSLTEGTGENGASPTRSASSSSAGSLDLEVDELETPSDSEQLDSGHEFEWEDDLPRAEGLGASEAAERLGRGCVCDVAGEDGHRWRVFRTGQREQRVDMTIIEPYKKVLSHGGYHGDGLNAVILFASCYLPRSSIPNYTYIMEHLFRYMVGTLELLVAENYLLVHLSGGTSRAQVPPLSWIRQCYRTLDRRLRKNLRALVVVHATWYVKAFLALVRPFISSKFTRKIRFLDSLGELAQLISLEQVHIPEVVRQLDRDLHGSKGT", "length": 328 }, "evidence": [ { "id": "F1SSA0", "url": "https://omabrowser.org/oma/group/F1SSA0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of cell population proliferation", "id": "GO:0008285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008285", "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ], "pmid": "" }, { "name": "regulation of growth rate", "id": "GO:0040009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0040009", "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SSA0", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 231, "end_pos": 233, "annotation": "n_glycosylation_sequon" }, { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSA0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 358, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSA0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSA0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSA0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA0" }, { "id": "PS50191", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50191" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRAL-TRIO", "eco_id": "ECO_0000259", "start_pos": 192, "end_pos": 353, "start_aa": "Asp", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 72 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 231, "end_pos": 233 }, { "start_pos": 96, "end_pos": 98 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSA6-1", "uniprot_ac": "F1SSA6", "uniprot_id": "F1SSA6_PIG", "mass": { "chemical_mass": 110066.0, "monoisotopic_mass": 110066.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Myosin-10", "type": "recommended", "evidence": [ { "id": "F1SSA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA6/entry#names_and_taxonomy" } ] }, { "name": "Cellular myosin heavy chain, type B", "type": "synonym", "evidence": [ { "id": "F1SSA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA6/entry#names_and_taxonomy" } ] }, { "name": "Myosin heavy chain 10", "type": "synonym", "evidence": [ { "id": "F1SSA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA6/entry#names_and_taxonomy" } ] }, { "name": "Myosin heavy chain, non-muscle IIb", "type": "synonym", "evidence": [ { "id": "F1SSA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA6/entry#names_and_taxonomy" } ] }, { "name": "Non-muscle myosin heavy chain B", "type": "synonym", "evidence": [ { "id": "F1SSA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA6/entry#names_and_taxonomy" } ] }, { "name": "Non-muscle myosin heavy chain IIb", "type": "synonym", "evidence": [ { "id": "F1SSA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSA6", "url": "https://www.uniprot.org/uniprotkb/F1SSA6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SSA6", "locus": {} } ], "crossref": [ { "id": "F1SSA6", "url": "https://alphafold.ebi.ac.uk/entry/F1SSA6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000038144", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000038144", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002928", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002928", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036961", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036961", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45615:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45615:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00063", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00063", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01576", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01576", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SSA6", "url": "https://www.uniprot.org/uniprotkb/F1SSA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSA6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSA6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNMDPLNDNVATLLHQSSDRFVAELWKDVDRIVGLDQVTGMAETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYHPLLSFVPQGSSGEGTGEIRALELDPNLYRIGQSKIFFRAGVLAHLEEERDLKITDIIIFFQAVCRGYLARKAFAKKQQQLSALKVLQRNCAAYLKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELLKVKEKQTKVEGELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFIKEKKLMEDRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIYELKIQVAKKEEELQGALARGDDETLHKNNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKALEEETKNHEAQIQDMRQRHAAALEELSEQLEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKANKLQNELDNVSTLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQEEEEEARKNLEKQVLALQAQLTDTKKKVDDDVGTIEGLEEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLLVDLDHQRQIVSNLEKKQKKFDQLLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKDEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEK", "length": 947, "header": "tr|F1SSA6-1|F1SSA6_PIG Isoform 1 of Myosin-10 OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F1SSA6-1" }, "isoforms": [ { "isoform_ac": "F1SSA6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSA6/entry#F1SSA6-1", "sequence": { "sequence": "MKNMDPLNDNVATLLHQSSDRFVAELWKDVDRIVGLDQVTGMAETAFGSAYKTKKGMFRTVGQLYKESLTKLMATLRNTNPNFVRCIIPNHEKRAGKLDPHLVLDQLRCNGVLEGIRICRQGFPNRIVFQEFRQRYHPLLSFVPQGSSGEGTGEIRALELDPNLYRIGQSKIFFRAGVLAHLEEERDLKITDIIIFFQAVCRGYLARKAFAKKQQQLSALKVLQRNCAAYLKLRHWQWWRVFTKVKPLLQVTRQEEELQAKDEELLKVKEKQTKVEGELEEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEEERNQILQNEKKKMQAHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNSKFIKEKKLMEDRIAECSSQLAEEEEKAKNLAKIRNKQEVMISDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIAELQAQIYELKIQVAKKEEELQGALARGDDETLHKNNALKVVRELQAQIAELQEDFESEKASRNKAEKQKRDLSEELEALKTELEDTLDTTAAQQELRTKREQEVAELKKALEEETKNHEAQIQDMRQRHAAALEELSEQLEQAKRFKANLEKNKQGLETDNKELACEVKVLQQVKAESEHKRKKLDAQVQELHAKVSEGDRLRVELAEKANKLQNELDNVSTLLEEAEKKGIKFAKDAASLESQLQDTQELLQEETRQKLNLSSRIRQLEEEKNSLQEQQEEEEEARKNLEKQVLALQAQLTDTKKKVDDDVGTIEGLEEAKKKLLKDAEALSQRLEEKALAYDKLEKTKNRLQQELDDLLVDLDHQRQIVSNLEKKQKKFDQLLAEEKNISARYAEERDRAEAEAREKETKALSLARALEEALEAKDEFERQNKQLRADMEDLMSSKDDVGKNVHELEKSKRALEQQVEK", "length": 947, "header": "tr|F1SSA6-1|F1SSA6_PIG Isoform 1 of Myosin-10 OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F1SSA6-1" }, "locus": { "chromosome": "12", "start_pos": 53692552, "end_pos": 53659577, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019573.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019573.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019055.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019055.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSA6", "url": "https://www.uniprot.org/uniprotkb/F1SSA6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "postsynaptic actin cytoskeleton", "id": "GO:0098871", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098871", "evidence": [ { "database": "UniProtKB", "id": "F1SSA6", "url": "https://www.uniprot.org/uniprotkb/F1SSA6" } ], "pmid": "" }, { "name": "myosin complex", "id": "GO:0016459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016459", "evidence": [ { "database": "UniProtKB", "id": "F1SSA6", "url": "https://www.uniprot.org/uniprotkb/F1SSA6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F1SSA6", "url": "https://www.uniprot.org/uniprotkb/F1SSA6" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SSA6", "url": "https://www.uniprot.org/uniprotkb/F1SSA6" } ], "pmid": "" }, { "name": "cytoskeletal motor activity", "id": "GO:0003774", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003774", "evidence": [ { "database": "UniProtKB", "id": "F1SSA6", "url": "https://www.uniprot.org/uniprotkb/F1SSA6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of cell shape", "id": "GO:0008360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008360", "evidence": [ { "database": "UniProtKB", "id": "F1SSA6", "url": "https://www.uniprot.org/uniprotkb/F1SSA6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" }, { "start_pos": 737, "end_pos": 739, "annotation": "n_glycosylation_sequon" }, { "start_pos": 866, "end_pos": 868, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSA6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 947, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSA6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSA6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSA6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSA6" }, { "id": "PS51456", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51456" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Myosin motor", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 187, "start_aa": "Met", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 695, "end_pos": 697 }, { "start_pos": 737, "end_pos": 739 }, { "start_pos": 866, "end_pos": 868 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSF3-1", "uniprot_ac": "F1SSF3", "uniprot_id": "F1SSF3_PIG", "mass": { "chemical_mass": 46148.0, "monoisotopic_mass": 46148.0 }, "refseq": { "ac": "XP_020934195", "name": "serine/threonine-protein kinase 17A", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934195" }, "gene_names": [ { "name": "STK17A", "type": "recommended", "evidence": [ { "id": "F1SSF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ] }, { "name": "STK17A", "type": "synonym", "evidence": [ { "id": "XP_020934195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934195" } ] } ], "protein_names": [ { "name": "Serine/threonine-protein kinase 17A", "type": "recommended", "evidence": [ { "id": "F1SSF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF3/entry#names_and_taxonomy" } ] }, { "name": "2.7.11.1", "type": "synonym", "evidence": [ { "id": "F1SSF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF3/entry#names_and_taxonomy" } ] }, { "name": "DAP kinase-related apoptosis-inducing protein kinase 1", "type": "synonym", "evidence": [ { "id": "F1SSF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF3/entry#names_and_taxonomy" } ] }, { "name": "serine/threonine-protein kinase 17A", "type": "synonym", "evidence": [ { "id": "XP_020934195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934195" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "STK17A", "url": "https://www.uniprot.org/uniprotkb/F1SSF3", "locus": { "chromosome": "18", "start_pos": 51322240, "end_pos": 51362177, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016758", "url": "https://www.ensembl.org/id/ENSSSCG00000016758" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016758", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016758", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100621897", "url": "https://www.ncbi.nlm.nih.gov/gene/100621897", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100621897", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621897", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AWNKSTE", "url": "https://omabrowser.org/oma/group/AWNKSTE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSF3", "url": "https://www.orthodb.org/?gene=F1SSF3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24342", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24342", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24342:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24342:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934195", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934195", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "17989", "url": "https://www.rhea-db.org/rhea/17989", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "46608", "url": "https://www.rhea-db.org/rhea/46608", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSF3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIPLEKPGSGDSSPAAASGSGRASRGPSTPRRPPPPARGLLTEIRTAVRTEPFQDSYSLSPGRELGRGKFAVVRKCIKKDSGREFAAKFMRKRRKGQDCRMEIIHEIAVLELAQDNPWVINLHEVYETPSEMILVLEYAAGGEIFDQCVADREEAFTEKDVQRLMRQILEGVRFLHAHDVVHLDLKPQNILLTSESPLGDIKIVDFGLSRIMKKSEELREIMGTPEYVAPEILSYDPISMATDMWSIGVLTYVMLTGVSPFLGDSKQETFLNISRMNLNYSEEEFDVVSESAVDFIKALLVKEPEDRATAEECLKHPWLAQGSAQEPSCKLKGAPEEAQALQEGDSVPESNSDPQTPETQEPVLTEELIVVTSYTLGQCRQSEKEKMEQKAISKRFKFEEPLLQEIPGDFIY", "length": 412, "header": "tr|F1SSF3-1|F1SSF3_PIG Isoform 1 of Serine/threonine-protein kinase 17A OS=Sus scrofa OX=9823 GN=STK17A PE=3 SV=3 CANONICAL=F1SSF3-1" }, "isoforms": [ { "isoform_ac": "F1SSF3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF3/entry#F1SSF3-1", "sequence": { "sequence": "MIPLEKPGSGDSSPAAASGSGRASRGPSTPRRPPPPARGLLTEIRTAVRTEPFQDSYSLSPGRELGRGKFAVVRKCIKKDSGREFAAKFMRKRRKGQDCRMEIIHEIAVLELAQDNPWVINLHEVYETPSEMILVLEYAAGGEIFDQCVADREEAFTEKDVQRLMRQILEGVRFLHAHDVVHLDLKPQNILLTSESPLGDIKIVDFGLSRIMKKSEELREIMGTPEYVAPEILSYDPISMATDMWSIGVLTYVMLTGVSPFLGDSKQETFLNISRMNLNYSEEEFDVVSESAVDFIKALLVKEPEDRATAEECLKHPWLAQGSAQEPSCKLKGAPEEAQALQEGDSVPESNSDPQTPETQEPVLTEELIVVTSYTLGQCRQSEKEKMEQKAISKRFKFEEPLLQEIPGDFIY", "length": 412, "header": "tr|F1SSF3-1|F1SSF3_PIG Isoform 1 of Serine/threonine-protein kinase 17A OS=Sus scrofa OX=9823 GN=STK17A PE=3 SV=3 CANONICAL=F1SSF3-1" }, "locus": { "chromosome": "18", "start_pos": 51362053, "end_pos": 51325783, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018240.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018240.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017748.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017748.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100621897", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100621897", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PV76-1", "protein_name": "Serine/threonine-protein kinase 17A", "gene_name": "STK17A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSPEEKPPPGRSHDECSPQPAAGRGRRRGGLLTEIRTPIRTEPFQQRYSLSPGRELGRGKFAVVKKCIQKDTEREFAAKFMRKRRKGQDCRMEIIHEIAVLELAQCNLWVINLHEVYETATEMILVLEYAAGGEIFDQCVAEREEAFKEKDVKRLMKQILEGVSFLHRNNVVHLDLKPQNILLTSKSPLGDIKIVDFGLSRIVKSSEELREIMGTPEYVAPEILSYDPISTATDMWSIGVLAYIMLTGISPFLGDDKQETFLNISQMNVCYTGEDFDLISESAVDFMKTLLVKKPEERATAEECLQHPWLEQSDEPTCRAWSKSARRENSDVIQKNADSASEKPVDVEKAEEEESVITEELIVVASYTLGQCRQSEKEKATEQKAISKRFKFEEPLLQEIPGEFIY", "length": 406 }, "evidence": [ { "id": "F1SSF3", "url": "https://omabrowser.org/oma/group/F1SSF3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G5E5A0-1", "protein_name": "Serine/threonine-protein kinase 17A", "gene_name": "STK17A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIPLEKPGSGGSSPAVASGSGRAGRGLSTPRRPPPPTQARGLLTEIRTAVRTEHFQDAYTLTPGRELGRGKFAVVRKCIKKDSGKEFAAKFMRKRRKGQDCRMEIVHEIAVLELAQDNPWVINLHEVYETPSEMILVLEYAAGGEIFDQCVADRDEAFTEKDVQRLMRQILEGVCFLHAHDVVHLDLKPQNILLTSESPLGDIKIVDFGLSRIMKKSEELREIMGTPEYVAPEVLSYDPISTATDMWSIGVLAYVMLTGISPFLGDDKQETFLNISQMNLSYSEEEFDVVSESAVDFIKTLLVKKPDVNCVSLSRDRATAEECLKHPWLTQSGVQEPAFKVKGALEEAHALQEADPVSESNSDTQKPETEESIVTEELILVTSYTLGQCRQSEKEKMEQKAISKRFKFEEPLLQDIPGDFIY", "length": 422 }, "evidence": [ { "id": "F1SSF3", "url": "https://omabrowser.org/oma/group/F1SSF3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9UEE5-1", "protein_name": "Serine/threonine-protein kinase 17A", "gene_name": "STK17A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIPLEKPGSGGSSPGATSGSGRAGRGLSGPCRPPPPPQARGLLTEIRAVVRTEPFQDGYSLCPGRELGRGKFAVVRKCIKKDSGKEFAAKFMRKRRKGQDCRMEIIHEIAVLELAQDNPWVINLHEVYETASEMILVLEYAAGGEIFDQCVADREEAFKEKDVQRLMRQILEGVHFLHTRDVVHLDLKPQNILLTSESPLGDIKIVDFGLSRILKNSEELREIMGTPEYVAPEILSYDPISMATDMWSIGVLTYVMLTGISPFLGNDKQETFLNISQMNLSYSEEEFDVLSESAVDFIRTLLVKKPEDRATAEECLKHPWLTQSSIQEPSFRMEKALEEANALQEGHSVPEINSDTDKSETKESIVTEELIVVTSYTLGQCRQSEKEKMEQKAISKRFKFEEPLLQEIPGEFIY", "length": 414 }, "evidence": [ { "id": "F1SSF3", "url": "https://omabrowser.org/oma/group/F1SSF3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein serine/threonine kinase activity", "id": "GO:0004674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004674", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "pmid": "" }, { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "pmid": "" }, { "name": "regulation of reactive oxygen species metabolic process", "id": "GO:2000377", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000377", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "pmid": "" }, { "name": "positive regulation of fibroblast apoptotic process", "id": "GO:2000271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000271", "evidence": [ { "database": "UniProtKB", "id": "F1SSF3", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "17989", "name": "", "equation": "L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "17989", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/17989" } ] }, { "id": "46608", "name": "", "equation": "L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "46608", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/46608" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF3" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 59, "end_pos": 319, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 272, "end_pos": 274 }, { "start_pos": 279, "end_pos": 281 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSF8-1", "uniprot_ac": "F1SSF8", "uniprot_id": "F1SSF8_PIG", "mass": { "chemical_mass": 51483.0, "monoisotopic_mass": 51483.0 }, "refseq": { "ac": "XP_005673396", "name": "DNA polymerase delta subunit 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673396" }, "gene_names": [ { "name": "POLD2", "type": "recommended", "evidence": [ { "id": "F1SSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ] }, { "name": "POLD2", "type": "synonym", "evidence": [ { "id": "XP_005673396", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673396" } ] } ], "protein_names": [ { "name": "DNA polymerase delta subunit 2", "type": "recommended", "evidence": [ { "id": "F1SSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF8/entry#names_and_taxonomy" } ] }, { "name": "DNA polymerase delta subunit 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005673396", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673396" } ] }, { "name": "DNA polymerase delta subunit p50", "type": "synonym", "evidence": [ { "id": "F1SSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLD2", "url": "https://www.uniprot.org/uniprotkb/F1SSF8", "locus": { "chromosome": "18", "start_pos": 51046779, "end_pos": 51038358, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016753", "url": "https://www.ensembl.org/id/ENSSSCG00000016753" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016753", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016753", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07387", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07387", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514809", "url": "https://www.ncbi.nlm.nih.gov/gene/100514809", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024826", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024826", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040663", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040663", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "HCILIGT", "url": "https://omabrowser.org/oma/group/HCILIGT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSF8", "url": "https://www.orthodb.org/?gene=F1SSF8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10416:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10416:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04042", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04042", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110314", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110314", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174411", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174411", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174414", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174414", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174417", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174417", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174437", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174437", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5358565", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358565", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5358606", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358606", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5651801", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5651801", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5656169", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656169", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5685942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693537", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693537", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5696397", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696397", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5696400", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696400", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6782210", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782210", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69091", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69091", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69166", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69166", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69183", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69183", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005673396", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005673396", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSF8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRLVQMRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFAGLAPQKPTRPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVGDIFRYSGMEDHLEILEWTLQIRHISPTAPDTLGCYPFYKTDPFIFLECPHVYFCGNTPSFGSKIIRGPEDQTVLLVAVPDFSSTQTACLVNLRSLTCQPISFSGFGAEEEDLESLGLGP", "length": 471, "header": "tr|F1SSF8-1|F1SSF8_PIG Isoform 1 of DNA polymerase delta subunit 2 OS=Sus scrofa OX=9823 GN=POLD2 PE=3 SV=2 CANONICAL=F1SSF8-1" }, "isoforms": [ { "isoform_ac": "F1SSF8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSF8/entry#F1SSF8-1", "sequence": { "sequence": "MAMFSEQAAQRAHTLLSPPSASNATFDRIPVVTYTNSSQPFRLGERSFNRQYAHIYATRLVQMRPFLVSRARQRWGGGVVVKKLCELQPGEKCCVVGTLFKAMQLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGAIDVSKLVTGTVLALLGSAGDDGKFLVEDHCFAGLAPQKPTRPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVGDIFRYSGMEDHLEILEWTLQIRHISPTAPDTLGCYPFYKTDPFIFLECPHVYFCGNTPSFGSKIIRGPEDQTVLLVAVPDFSSTQTACLVNLRSLTCQPISFSGFGAEEEDLESLGLGP", "length": 471, "header": "tr|F1SSF8-1|F1SSF8_PIG Isoform 1 of DNA polymerase delta subunit 2 OS=Sus scrofa OX=9823 GN=POLD2 PE=3 SV=2 CANONICAL=F1SSF8-1" }, "locus": { "chromosome": "18", "start_pos": 51046673, "end_pos": 51039684, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047840.3", "url": "https://www.ensembl.org/id/ENSSSCT00000047840.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000031838.1", "url": "https://www.ensembl.org/id/ENSSSCP00000031838.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 379, "start_aa": "Thr", "end_pos": 379, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr379", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-110314", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110314", "resource": "Reactome", "description": "Recognition of DNA damage by PCNA-containing replication complex" }, { "id": "R-SSC-174411", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174411", "resource": "Reactome", "description": "Polymerase switching on the C-strand of the telomere" }, { "id": "R-SSC-174414", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174414", "resource": "Reactome", "description": "Processive synthesis on the C-strand of the telomere" }, { "id": "R-SSC-174417", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174417", "resource": "Reactome", "description": "Telomere C-strand (Lagging Strand) Synthesis" }, { "id": "R-SSC-174437", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174437", "resource": "Reactome", "description": "Removal of the Flap Intermediate from the C-strand" }, { "id": "R-SSC-5358565", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358565", "resource": "Reactome", "description": "Mismatch repair (MMR) directed by MSH2:MSH6 (MutSalpha)" }, { "id": "R-SSC-5358606", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358606", "resource": "Reactome", "description": "Mismatch repair (MMR) directed by MSH2:MSH3 (MutSbeta)" }, { "id": "R-SSC-5651801", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5651801", "resource": "Reactome", "description": "PCNA-Dependent Long Patch Base Excision Repair" }, { "id": "R-SSC-5656169", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5656169", "resource": "Reactome", "description": "Termination of translesion DNA synthesis" }, { "id": "R-SSC-5685942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5685942", "resource": "Reactome", "description": "HDR through Homologous Recombination (HRR)" }, { "id": "R-SSC-5693537", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693537", "resource": "Reactome", "description": "Resolution of D-Loop Structures" }, { "id": "R-SSC-5696397", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696397", "resource": "Reactome", "description": "Gap-filling DNA repair synthesis and ligation in GG-NER" }, { "id": "R-SSC-5696400", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696400", "resource": "Reactome", "description": "Dual Incision in GG-NER" }, { "id": "R-SSC-6782135", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782135", "resource": "Reactome", "description": "Dual incision in TC-NER" }, { "id": "R-SSC-6782210", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6782210", "resource": "Reactome", "description": "Gap-filling DNA repair synthesis and ligation in TC-NER" }, { "id": "R-SSC-69091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69091", "resource": "Reactome", "description": "Polymerase switching" }, { "id": "R-SSC-69166", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69166", "resource": "Reactome", "description": "Removal of the Flap Intermediate" }, { "id": "R-SSC-69183", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69183", "resource": "Reactome", "description": "Processive synthesis on the lagging strand" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZG11-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "POLD2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFSAVTPLPGRTLLGPPSAEPPTFARTGSDFADRSQPFRLGERSFSRQYAHLYATRLLCMRPRLEQQARLRWGDGVLLRKLCQLQVGERCCVVGTLFKAMRLQPSILQEINEEHNLVPQPSLAKYVDPSDELVLEDELQRIKLTGSIEASRLVTGAVLAVYGHEQEDGKFLVEEHCFAHLPPQLPWQGPSTDRFVLLASGLGLGSGSGESLLGTQLLVDAVTGQLGAEGQQSCAALISRVLLAGNLLSQSTQSRDSLHKAKYLTKKTQAASVEAVKMLDEILLQLCSSVPVDVMPGEFDPTNYTLPQQPLHRCMLPLSSAYPTLQLVTNPYQADMDGVRFLGTSGQNISDIFKYSSMDDYLEILEWTLLAGHISPTAPDTLGCYPFYNSDPFILTDCPHVYFCGNAPKFQSKLLTGEDGQRVLLVAVPAFSATQTACLVNLRDLSCQPISFSVFGAEDDSDMEVGQ", "length": 466 }, "evidence": [ { "id": "F1SSF8", "url": "https://omabrowser.org/oma/group/F1SSF8/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O35654-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "Pold2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSEQAAQRAHTLLAPPSASNATFARVPVATYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQPGEQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLACQPISFAGFGAEQEDLEGLGLGP", "length": 469 }, "evidence": [ { "id": "F1SSF8", "url": "https://omabrowser.org/oma/group/F1SSF8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O48520-1", "protein_name": "DNA polymerase delta small subunit", "gene_name": "POLD2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEIDSEKIHERKQSDYNSLDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFPRKLINGQNLASKDQSTLYEPIKELDIMLSQIAAGVSVDIMPGTNDPANFALPQQPLNRCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNLECHTLSFSTQINQS", "length": 440 }, "evidence": [ { "id": "F1SSF8", "url": "https://omabrowser.org/oma/group/F1SSF8/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P46957-1", "protein_name": "DNA polymerase delta small subunit", "gene_name": "POL31", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDALLTKFNEDRSLQDENLSQPRTRVRIVDDNLYNKSNPFQLCYKKRDYGSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQGNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLVGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFPAPIATCPTRGKIALVSGLNLNNTSPDRLLRLEILREFLMGRINNKIDDISLIGRLLICGNSVDFDIKSVNKDELMISLTEFSKFLHNILPSISVDIMPGTNDPSDKSLPQQPFHKSLFDKSLESYFNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESNDFKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTRVVEIGGKNIKIISVPEFSSTGMIILLDLETLEAETVKIDI", "length": 487 }, "evidence": [ { "id": "F1SSF8", "url": "https://omabrowser.org/oma/group/F1SSF8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P49004-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "POLD2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFSEQAAQRAHTLLSPPSASNATFARVPVVTYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGTIDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLACQPISFSGFGAEDEDLGGLGLGP", "length": 469 }, "evidence": [ { "id": "F1SSF8", "url": "https://omabrowser.org/oma/group/F1SSF8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P49005-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "POLD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFSEQAAQRAHTLLSPPSANNATFARVPVATYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQAASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPISFSGFGAEDDDLGGLGLGP", "length": 469 }, "evidence": [ { "id": "F1SSF8", "url": "https://omabrowser.org/oma/group/F1SSF8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54TN8-1", "protein_name": "DNA-directed DNA polymerase", "gene_name": "polD2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFEEINHDNESLIELFKRIEKIETKFKQTKKSYGKDKNFGLDQDYKTTERLDVIIHHNKERFLEKQPNSTIKSIHKNDDNKNGDGGGGATTSLVIGQHSNLQYSSIYASRLEKLNPILVENVESKYPGIPTQKILHMKPGDECIMIGTLYKEMELKPNILKAYAQDRAMLPIPDNRESFIGEKDKLFFEDNTGRVKLIGSKEMVDSLVTGLNVAILGKGLPDAEFEVRDIVFPGIPPQPHSRDLESLKDDAYICLISGLNVGDANNIFQTQLLMDYLQGNLVDNGSDLLGKICKVLFVGNSIHKENEPIEAFVRYSSKSEIQAKQAKKAIPIKDLDGFLCELCQTVPVDIIPGPNDPTNISLPQLPLNSCLFPFSIQNTNLTTCTNPYQSQIGGRLLLGTSGQNIENASRYMTYENKMSLTESTLIWRHLAPTAPDTLTCAALDNDPFVIEQCPDIYFVGNQDHFETKLLKGPNDEIVRLIFIPNFSETNTIILVNLKTLDTFPIHFNTTSFFPQSPSTEQ", "length": 521 }, "evidence": [ { "id": "F1SSF8", "url": "https://omabrowser.org/oma/group/F1SSF8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9W088-1", "protein_name": "DNA polymerase delta subunit 2", "gene_name": "PolD2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTNRLETKYENLSSIFRLKGHDYQKQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCELRGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVRLQGKLNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIKRSRLLVLASGLDQLQAHKFVEALNLFQYWLAGSLGNNKEAGSMVRLIVAGNSVRASAMAHVPTLQVARTQANANDTVQAVSQLDQWFASWARSLPVDIMPGPYDPANFMLPQQPFHKCMFPQAAQLATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALEALRCTLTWGHVAPTAPDTLACYPYIESDPFILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSKTQSVAVVDLDTLDCRMVNFSVDAE", "length": 431 }, "evidence": [ { "id": "F1SSF8", "url": "https://omabrowser.org/oma/group/F1SSF8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA strand elongation involved in DNA replication", "id": "GO:0006271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006271", "evidence": [ { "database": "UniProtKB", "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ], "pmid": "" }, { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ], "pmid": "" }, { "name": "error-prone translesion synthesis", "id": "GO:0042276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042276", "evidence": [ { "database": "UniProtKB", "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "delta DNA polymerase complex", "id": "GO:0043625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043625", "evidence": [ { "database": "UniProtKB", "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ], "pmid": "" }, { "name": "zeta DNA polymerase complex", "id": "GO:0016035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016035", "evidence": [ { "database": "UniProtKB", "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SSF8", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" }, { "id": "PF04042", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04042" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA polymerase alpha/delta/epsilon subunit B", "eco_id": "ECO_0000259", "start_pos": 198, "end_pos": 413, "start_aa": "Val", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSF8" }, { "id": "PF18018", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18018" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA polymerase delta subunit OB-fold", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 177, "start_aa": "Gln", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 379 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 23, "end_pos": 25 }, { "start_pos": 305, "end_pos": 307 }, { "start_pos": 36, "end_pos": 38 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSH9-1", "uniprot_ac": "F1SSH9", "uniprot_id": "F1SSH9_PIG", "mass": { "chemical_mass": 27771.0, "monoisotopic_mass": 27771.0 }, "refseq": { "ac": "XP_005660081", "name": "homeobox protein SIX6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660081" }, "gene_names": [ { "name": "SIX6", "type": "recommended", "evidence": [ { "id": "F1SSH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" } ] }, { "name": "SIX6", "type": "synonym", "evidence": [ { "id": "XP_005660081", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660081" } ] } ], "protein_names": [ { "name": "SIX homeobox 6", "type": "synonym", "evidence": [ { "id": "F1SSH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSH9/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein SIX6", "type": "synonym", "evidence": [ { "id": "XP_005660081", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660081" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSH9", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SIX6", "url": "https://www.uniprot.org/uniprotkb/F1SSH9", "locus": { "chromosome": "1", "start_pos": 189503500, "end_pos": 189497815, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005086", "url": "https://www.ensembl.org/id/ENSSSCG00000005086" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005086", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005086", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519236", "url": "https://www.ncbi.nlm.nih.gov/gene/100519236", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519236", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519236", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PAGICCV", "url": "https://omabrowser.org/oma/group/PAGICCV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSH9", "url": "https://www.orthodb.org/?gene=F1SSH9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10390", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10390", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10390:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10390:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16878", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16878", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005660081", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005660081", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSH9", "url": "https://www.uniprot.org/uniprotkb/F1SSH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSH9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGSSRALRPEEEGTPEVLGAAASPAASLSSKAATSAISITSSDSECDI", "length": 246, "header": "tr|F1SSH9-1|F1SSH9_PIG Isoform 1 of SIX homeobox 6 OS=Sus scrofa OX=9823 GN=SIX6 PE=3 SV=2 CANONICAL=F1SSH9-1" }, "isoforms": [ { "isoform_ac": "F1SSH9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSH9/entry#F1SSH9-1", "sequence": { "sequence": "MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGSSRALRPEEEGTPEVLGAAASPAASLSSKAATSAISITSSDSECDI", "length": 246, "header": "tr|F1SSH9-1|F1SSH9_PIG Isoform 1 of SIX homeobox 6 OS=Sus scrofa OX=9823 GN=SIX6 PE=3 SV=2 CANONICAL=F1SSH9-1" }, "locus": { "chromosome": "1", "start_pos": 189499807, "end_pos": 189498024, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005606.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005606.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005466.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005466.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSH9", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519236", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519236", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZCC7-1", "protein_name": "SIX homeobox 6", "gene_name": "Six6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGPGRVLRSEGEGTPEVLGVASSPAASLSSKAATSAISITSSDSECDI", "length": 246 }, "evidence": [ { "id": "F1SSH9", "url": "https://omabrowser.org/oma/group/F1SSH9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3IBN3-1", "protein_name": "Homeobox protein SIX6", "gene_name": "Six6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGSGRVLRSEGEGTPEVLGVASSPAASLSSKAATSAISITSSDSECDI", "length": 246 }, "evidence": [ { "id": "F1SSH9", "url": "https://omabrowser.org/oma/group/F1SSH9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O95475-1", "protein_name": "Homeobox protein SIX6", "gene_name": "SIX6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGSGRALRAEGDGTPEVLGVATSPAASLSSKAATSAISITSSDSECDI", "length": 246 }, "evidence": [ { "id": "F1SSH9", "url": "https://omabrowser.org/oma/group/F1SSH9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QZ28-1", "protein_name": "Homeobox protein SIX6", "gene_name": "Six6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLPILNFSPQQVAGVCETLEESGDVERLGRFLWSLPVAPAACEALNKNESVLRARAIVAFHGGNYRELYHILENHKFTKESHAKLQALWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRHLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQQQVLSQGPGRVLRSEGEGTPEVLGVASSPAASLSSKAATSAISITSSDSECDI", "length": 246 }, "evidence": [ { "id": "F1SSH9", "url": "https://omabrowser.org/oma/group/F1SSH9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSH9", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" } ], "pmid": "" }, { "name": "transcription regulator complex", "id": "GO:0005667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005667", "evidence": [ { "database": "UniProtKB", "id": "F1SSH9", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SSH9", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" } ], "pmid": "" }, { "name": "eye development", "id": "GO:0001654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001654", "evidence": [ { "database": "UniProtKB", "id": "F1SSH9", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SSH9", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SSH9", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSH9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSH9" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 126, "end_pos": 186, "start_aa": "Trp", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 50, "end_pos": 52 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSI6-1", "uniprot_ac": "F1SSI6", "uniprot_id": "F1SSI6_PIG", "mass": { "chemical_mass": 35512.0, "monoisotopic_mass": 35512.0 }, "refseq": { "ac": "XP_003134636", "name": "taste receptor type 2 member 41", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134636" }, "gene_names": [ { "name": "TAS2R41", "type": "recommended", "evidence": [ { "id": "F1SSI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSI6" } ] }, { "name": "TAS2R41", "type": "synonym", "evidence": [ { "id": "XP_003134636", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134636" } ] } ], "protein_names": [ { "name": "Taste receptor type 2", "type": "recommended", "evidence": [ { "id": "F1SSI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSI6/entry#names_and_taxonomy" } ] }, { "name": "taste receptor type 2 member 41", "type": "synonym", "evidence": [ { "id": "XP_003134636", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134636" } ] } ], "function": [ { "annotation": "Receptor that may play a role in the perception of bitterness and is gustducin-linked. May play a role in sensing the chemical composition of the gastrointestinal content. The activity of this receptor may stimulate alpha gustducin, mediate PLC-beta-2 activation and lead to the gating of TRPM5.", "evidence": [ { "database": "UniProtKB", "id": "F1SSI6", "url": "https://www.uniprot.org/uniprotkb/F1SSI6#function" }, { "database": "UniProtKB", "id": "ARBA00024847", "url": "https://www.uniprot.org/uniprotkb/ARBA00024847#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSI6", "url": "https://www.uniprot.org/uniprotkb/F1SSI6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TAS2R41", "url": "https://www.uniprot.org/uniprotkb/F1SSI6", "locus": { "chromosome": "18", "start_pos": 6780808, "end_pos": 6781731, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016457", "url": "https://www.ensembl.org/id/ENSSSCG00000016457" } ] } } ], "crossref": [ { "id": "F1SSI6", "url": "https://alphafold.ebi.ac.uk/entry/F1SSI6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016457", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016457", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524003", "url": "https://www.ncbi.nlm.nih.gov/gene/100524003", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524003", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524003", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FCLQWVG", "url": "https://omabrowser.org/oma/group/FCLQWVG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSI6", "url": "https://www.orthodb.org/?gene=F1SSI6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11394:SF73", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11394:SF73", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05296", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05296", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-420499", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420499", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9717207", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9717207", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003134636", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134636", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSI6", "url": "https://www.uniprot.org/uniprotkb/F1SSI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSI6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHLAFTVLFVLLFVLLCVLGFLANGFIVLALSREWARHGRLLPSDLILISLGASRFCLQWVGMGNNFYYFFHLVEYCRGPARQYFGLPWDFLNSVTFWFGSWLSVLFCVKIANFSHPAFLWLKWRFPGSVPWLLLGSLLISFIVALLFFWGNHALYKGYLIRRYSGNMTCKQWSRRLETHYFLPLKLITLSIPCSVFLVSIALLINSLRRHSWRMQRSAHTPQDPSAQAHIRALKSLISFLVLYALSFVSLVIDAAGIFSESDWYWPWQILVYLCTSVHPFILILSNLRLRGVFGQLTLLARGFRVA", "length": 307, "header": "tr|F1SSI6-1|F1SSI6_PIG Isoform 1 of Taste receptor type 2 OS=Sus scrofa OX=9823 GN=TAS2R41 PE=3 SV=1 CANONICAL=F1SSI6-1" }, "isoforms": [ { "isoform_ac": "F1SSI6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSI6/entry#F1SSI6-1", "sequence": { "sequence": "MHLAFTVLFVLLFVLLCVLGFLANGFIVLALSREWARHGRLLPSDLILISLGASRFCLQWVGMGNNFYYFFHLVEYCRGPARQYFGLPWDFLNSVTFWFGSWLSVLFCVKIANFSHPAFLWLKWRFPGSVPWLLLGSLLISFIVALLFFWGNHALYKGYLIRRYSGNMTCKQWSRRLETHYFLPLKLITLSIPCSVFLVSIALLINSLRRHSWRMQRSAHTPQDPSAQAHIRALKSLISFLVLYALSFVSLVIDAAGIFSESDWYWPWQILVYLCTSVHPFILILSNLRLRGVFGQLTLLARGFRVA", "length": 307, "header": "tr|F1SSI6-1|F1SSI6_PIG Isoform 1 of Taste receptor type 2 OS=Sus scrofa OX=9823 GN=TAS2R41 PE=3 SV=1 CANONICAL=F1SSI6-1" }, "locus": { "chromosome": "18", "start_pos": 6781731, "end_pos": 6780811, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017920.2", "url": "https://www.ensembl.org/id/ENSSSCT00000017920.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017439.1", "url": "https://www.ensembl.org/id/ENSSSCP00000017439.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSI6", "url": "https://www.uniprot.org/uniprotkb/F1SSI6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524003", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524003", "resource": "KEGG Pathway" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-420499", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-420499", "resource": "Reactome", "description": "Class C/3 (Metabotropic glutamate/pheromone receptors)" }, { "id": "R-SSC-9717207", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9717207", "resource": "Reactome", "description": "Sensory perception of sweet, bitter, and umami (glutamate) taste" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HL37-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r41", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPALTVFFMLIFVLLCFLGILANGFILLVLSMEWLRRGRLLPLDMILFSLGASRLCQQCVGLVNSFYYFLYLVEYSRGFARQIIGLHWDFLNSATFWFGTWLSVLFCTKIANFSHPVFLWLKWRLPALVPRLLLGSVLVSFIVTLLFFWGNYTVYQAFLRRKISGNTTFKEWNRRLEIDYFMPLKLVTMSIPCSLFLISILLLINSLRRHTQRMQSNAHSLQDPSAQAHSRALKSLISFLILYALSFVSMVIDATVIISSDNIWYWPWQIILYLCMTVHPFILITNNLRFRGTFRQLLLLFRGFWVA", "length": 308 }, "evidence": [ { "id": "F1SSI6", "url": "https://omabrowser.org/oma/group/F1SSI6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P59532-1", "protein_name": "Taste receptor type 2 member 41", "gene_name": "Tas2r41", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPTLSVFFMLTFVLLCFLGILANGFIVLMLSREWLLRGRLLPSDMILFSLGTSRFFQQCVGLVNSFYYFLHLVEYSGSLARQLISLHWDFLNSATFWFCTWLSVLFCIKIANFSHPAFLWLKWRFPALVPWFLLGSILVSVIVTLLFFWGNHTIYQAFLRRKFTGNTTFKEWNRRLEIDYFMPLKVVTMSIPCSLFLVSILLLISSLRRHSLRMQHNTHSLQDPNVQAHSRALKSLISFLVLYAVSFVSMIIDATVFISSDNVWYWPWQIILYFCMSVHPFILITNNLRFRGTFRQLLLLARGFWVA", "length": 308 }, "evidence": [ { "id": "F1SSI6", "url": "https://omabrowser.org/oma/group/F1SSI6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59536-1", "protein_name": "Taste receptor type 2 member 41", "gene_name": "TAS2R41", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQAALTAFFVLLFSLLSLLGIAANGFIVLVLGREWLRYGRLLPLDMILISLGASRFCLQLVGTVHNFYYSAQKVEYSGGLGRQFFHLHWHFLNSATFWFCSWLSVLFCVKIANITHSTFLWLKWRFPGWVPWLLLGSVLISFIITLLFFWVNYPVYQEFLIRKFSGNMTYKWNTRIETYYFPSLKLVIWSIPFSVFLVSIMLLINSLRRHTQRMQHNGHSLQDPSTQAHTRALKSLISFLILYALSFLSLIIDAAKFISMQNDFYWPWQIAVYLCISVHPFILIFSNLKLRSVFSQLLLLARGFWVA", "length": 307 }, "evidence": [ { "id": "F1SSI6", "url": "https://omabrowser.org/oma/group/F1SSI6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JKE7-1", "protein_name": "Taste receptor type 2 member 41", "gene_name": "Tas2r41", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSTVSVFFMSIFVLLCFLGILANGFIVLMLSREWLWRGRLLPSDMILLSLGTSRFCQQCVGLVNSFYYSLHLVEYSRSLARQLISLHMDFLNSATFWFGTWLSVLFCIKIANFSHPAFLWLKWRFPALVPWLLLGSILVSFIVTLMFFWGNHTVYQAFLRRKFSGNTTFKEWNRRLEIDYFMPLKLVTTSIPCSLFLVSILLLINSLRRHSQRMQHNAHSLQDPNTQAHSRALKSLISFLVLYALSYVSMVIDATVVISSDNVWYWPWQIILYLCMSVHPFILITNNLKFRGTFRQLLLLARGFWVT", "length": 308 }, "evidence": [ { "id": "F1SSI6", "url": "https://omabrowser.org/oma/group/F1SSI6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SSI6", "url": "https://www.uniprot.org/uniprotkb/F1SSI6" } ], "pmid": "" }, { "name": "bitter taste receptor activity", "id": "GO:0033038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033038", "evidence": [ { "database": "UniProtKB", "id": "F1SSI6", "url": "https://www.uniprot.org/uniprotkb/F1SSI6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SSI6", "url": "https://www.uniprot.org/uniprotkb/F1SSI6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSI6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 307, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSI6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSI6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 113, "end_pos": 115 }, { "start_pos": 167, "end_pos": 169 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSI8-1", "uniprot_ac": "F1SSI8", "uniprot_id": "F1SSI8_PIG", "mass": { "chemical_mass": 35332.0, "monoisotopic_mass": 35332.0 }, "refseq": { "ac": "XP_003134612", "name": "olfactory receptor-like protein OLF3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134612" }, "gene_names": [ { "name": "LOC100519633", "type": "recommended", "evidence": [ { "id": "F1SSI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSI8" } ] }, { "name": "LOC100519633", "type": "synonym", "evidence": [ { "id": "XP_003134612", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134612" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SSI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSI8/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor-like protein OLF3", "type": "synonym", "evidence": [ { "id": "XP_003134612", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134612" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SSI8", "url": "https://www.uniprot.org/uniprotkb/F1SSI8#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSI8", "url": "https://www.uniprot.org/uniprotkb/F1SSI8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100519633", "url": "https://www.uniprot.org/uniprotkb/F1SSI8", "locus": {} } ], "crossref": [ { "id": "F1SSI8", "url": "https://alphafold.ebi.ac.uk/entry/F1SSI8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15429", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15429", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519633", "url": "https://www.ncbi.nlm.nih.gov/gene/100519633", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519633", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519633", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VFLMTPF", "url": "https://omabrowser.org/oma/group/VFLMTPF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSI8", "url": "https://www.orthodb.org/?gene=F1SSI8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134612", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134612", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSI8", "url": "https://www.uniprot.org/uniprotkb/F1SSI8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSI8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSI8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRNNQTWVREFILLGLSSDWDTQLSLFVLFLVMYLVTVLGNLLIVLLIRLDSRLHTPMYFFLTNLSLVDVSYATNIVPQMLVHLLAKHKRIPFVSCAAQLFFSLGLGGTEFVLLAVMAYDRYVAVCNPLRYPVIMHGGFCTRLAVTSWLSGSGNSLMQTAITFQLPMCTNKYIDHISCEILAVIRLACVDTSSNEVAITVSSIVLLMTPFCLVLMSYIQIVSTILQVRSAEGRKKAFHTCASHLTVVALCYGMAIFTYIQPHSSPSILQEKLISVFYAILMPVLNPMIYSLRNKDVKGAWQKLLGQLSGLTSKLAT", "length": 317, "header": "tr|F1SSI8-1|F1SSI8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100519633 PE=3 SV=3 CANONICAL=F1SSI8-1" }, "isoforms": [ { "isoform_ac": "F1SSI8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSI8/entry#F1SSI8-1", "sequence": { "sequence": "MGRNNQTWVREFILLGLSSDWDTQLSLFVLFLVMYLVTVLGNLLIVLLIRLDSRLHTPMYFFLTNLSLVDVSYATNIVPQMLVHLLAKHKRIPFVSCAAQLFFSLGLGGTEFVLLAVMAYDRYVAVCNPLRYPVIMHGGFCTRLAVTSWLSGSGNSLMQTAITFQLPMCTNKYIDHISCEILAVIRLACVDTSSNEVAITVSSIVLLMTPFCLVLMSYIQIVSTILQVRSAEGRKKAFHTCASHLTVVALCYGMAIFTYIQPHSSPSILQEKLISVFYAILMPVLNPMIYSLRNKDVKGAWQKLLGQLSGLTSKLAT", "length": 317, "header": "tr|F1SSI8-1|F1SSI8_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100519633 PE=3 SV=3 CANONICAL=F1SSI8-1" }, "locus": { "chromosome": "18", "start_pos": 6537647, "end_pos": 6536697, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017918.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017918.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017437.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017437.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSI8", "url": "https://www.uniprot.org/uniprotkb/F1SSI8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519633", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519633", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q13607-1", "protein_name": "Olfactory receptor 2F1", "gene_name": "OR2F1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGTDNQTWVSEFILLGLSSDWDTRVSLFVLFLVMYVVTVLGNCLIVLLIRLDSRLHTPMYFFLTNLSLVDVSYATSVVPQLLAHFLAEHKAIPFQSCAAQLFFSLALGGIEFVLLAVMAYDRYVAVCDALRYSAIMHGGLCARLAITSWVSGFISSPVQTAITFQLPMCRNKFIDHISCELLAVVRLACVDTSSNEVTIMVSSIVLLMTPFCLVLLSYIQIISTILKIQSREGRKKAFHTCASHLTVVALCYGVAIFTYIQPHSSPSVLQEKLFSVFYAILTPMLNPMIYSLRNKEVKGAWQKLLWKFSGLTSKLAT", "length": 317 }, "evidence": [ { "id": "F1SSI8", "url": "https://omabrowser.org/oma/group/F1SSI8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TRV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or2f1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKDNQTWIHEFILLGLSSDWNTEVSLFVLFLLMYLVTVLGNFLIIVLIRLDSRLHTPMYFFLTNLSLVDVSYATSIVPQLLAHFLATHKTIPFLSCAAQLFFSLGLGGIEFVLLAMMAYDRYVAVCNPLRYSAIMHTGLCSRMAIVSWVGGSINSVMQTAITFQLPMCTNVYIDHISCELLAVVRLACVDTSANEVAIMVSSIILLMTPFCLVLLSYIQIISTILKIQSKEGRKKAFHTCASHLTVVALCYGMAIFTYIQPHSSPSVLQEKLISLFYAILTPMLNPMIYSLRNKEVKGAWQKLLGQFSEFTSKLKT", "length": 317 }, "evidence": [ { "id": "F1SSI8", "url": "https://omabrowser.org/oma/group/F1SSI8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SSI8", "url": "https://www.uniprot.org/uniprotkb/F1SSI8" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SSI8", "url": "https://www.uniprot.org/uniprotkb/F1SSI8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SSI8", "url": "https://www.uniprot.org/uniprotkb/F1SSI8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SSI8", "url": "https://www.uniprot.org/uniprotkb/F1SSI8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSI8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 317, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSI8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSI8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSI8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSI8" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSI9-1", "uniprot_ac": "F1SSI9", "uniprot_id": "F1SSI9_PIG", "mass": { "chemical_mass": 35271.0, "monoisotopic_mass": 35271.0 }, "refseq": { "ac": "XP_003134635", "name": "olfactory receptor-like protein OLF3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134635" }, "gene_names": [ { "name": "LOC100523829", "type": "recommended", "evidence": [ { "id": "F1SSI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSI9" } ] }, { "name": "LOC100523829", "type": "synonym", "evidence": [ { "id": "XP_003134635", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134635" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SSI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSI9/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor-like protein OLF3", "type": "synonym", "evidence": [ { "id": "XP_003134635", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134635" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SSI9", "url": "https://www.uniprot.org/uniprotkb/F1SSI9#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSI9", "url": "https://www.uniprot.org/uniprotkb/F1SSI9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100523829", "url": "https://www.uniprot.org/uniprotkb/F1SSI9", "locus": {} } ], "crossref": [ { "id": "F1SSI9", "url": "https://alphafold.ebi.ac.uk/entry/F1SSI9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15429", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15429", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523829", "url": "https://www.ncbi.nlm.nih.gov/gene/100523829", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523829", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523829", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AIMHVGL", "url": "https://omabrowser.org/oma/group/AIMHVGL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSI9", "url": "https://www.orthodb.org/?gene=F1SSI9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003134635", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134635", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSI9", "url": "https://www.uniprot.org/uniprotkb/F1SSI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSI9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTENQTWEKEFILLGLSSDWDTQVSLFVLFLVMYLVTVLGNLLIVLLIRLDSRLHTPMYFFLTNLSLVDVSYATNIVPQMLVHLLAKHKRIPFVSCAAQLFFSLGLGGTEFVLLAVMAYDRYVAVCNPLRYPVIMHGGFCTRLAVTSWLSGSGNSLMQTAITFQVPTCTNKCIDHISCELLAVVRLACVDTSSNKVAITVSSIVLLMTPFCLVLVSYIQIVSTILQVRSAEGRKKAFHTCASHLTVVALCYGMAIFTYIQPHSSPSVLQEKLISVFYAILMPVLNPMIYSLRNKDVKGAWQKLLGQLSGLTSKLATR", "length": 318, "header": "tr|F1SSI9-1|F1SSI9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100523829 PE=3 SV=3 CANONICAL=F1SSI9-1" }, "isoforms": [ { "isoform_ac": "F1SSI9-1", "url": "https://www.uniprot.org/uniprotkb/F1SSI9/entry#F1SSI9-1", "sequence": { "sequence": "MGTENQTWEKEFILLGLSSDWDTQVSLFVLFLVMYLVTVLGNLLIVLLIRLDSRLHTPMYFFLTNLSLVDVSYATNIVPQMLVHLLAKHKRIPFVSCAAQLFFSLGLGGTEFVLLAVMAYDRYVAVCNPLRYPVIMHGGFCTRLAVTSWLSGSGNSLMQTAITFQVPTCTNKCIDHISCELLAVVRLACVDTSSNKVAITVSSIVLLMTPFCLVLVSYIQIVSTILQVRSAEGRKKAFHTCASHLTVVALCYGMAIFTYIQPHSSPSVLQEKLISVFYAILMPVLNPMIYSLRNKDVKGAWQKLLGQLSGLTSKLATR", "length": 318, "header": "tr|F1SSI9-1|F1SSI9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100523829 PE=3 SV=3 CANONICAL=F1SSI9-1" }, "locus": { "chromosome": "18", "start_pos": 6517427, "end_pos": 6516474, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017917.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017917.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017436.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017436.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSI9", "url": "https://www.uniprot.org/uniprotkb/F1SSI9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523829", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523829", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4AAR1-1", "protein_name": "Olfactory receptor", "gene_name": "Or2f2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEQDNQTWVHEFILLGLSSDWNTQVSLFILFLLMYLLTVLGNFLIILLIRLDSRLHTPMYFFLNNLSLVDVSYATSIVPQLLAHFLATRKAIPFLSCAAQLFFSLGLGGIEFLLLAVMAYDRYVAVCDPLRYSVIMHTGLCTRLVITSWVSGSLNSLVHTAITFQLPMCTNKYIDHISCEILAVVRLACVDTSSNEIVIMVSSIVLLMTPFFLVLLSYIQIISTILKIQSTEGRRKAFHTCASHLTVVTLCYGTTIFTYIQPHSSPSVLQEKLISLFYAILMPMLNPMIYSLRNKEVKGAWQKLLGNLSGFTSKLTSG", "length": 318 }, "evidence": [ { "id": "F1SSI9", "url": "https://omabrowser.org/oma/group/F1SSI9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3N333-1", "protein_name": "Olfactory receptor", "gene_name": "OR2F2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGADNQTWVREFILLGLSSDWATQVALFVLFSVTYLLTLLGNVLIVLLIRLDSRLHTPMYFFLTNLSLVDVSYATSIVPQMLVHFLAEHKGIPYVSCAAQLFFSLGLGGIEFVLLAVMAYDRYAAVCDPLRYSVIMHGGLCARLAITSWVSGSVNSLVQTTITFQLPMCTNKYIDHISCELLAVVRLACVDTSSNEVAIMVSSIVLLMTPFCLVLLSYIRIISTILKIQSTEGRKKAFHTCASHLTVVVLCYSMTIFTYIQPNSSPSVLQEKLISVFYAILMPVLNPMIYSLRNKEVKGAWQKLLGQLSGLTSKVAT", "length": 317 }, "evidence": [ { "id": "F1SSI9", "url": "https://omabrowser.org/oma/group/F1SSI9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O95006-1", "protein_name": "Olfactory receptor 2F2", "gene_name": "OR2F2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEIDNQTWVREFILLGLSSDWCTQISLFSLFLVTYLMTVLGNCLIVLLIRLDSRLHTPMYFFLTNLSLVDVSYATSVVPQLLAHFLAEHKAIPFQSCAAQLFFSLALGGIEFVLLAVMAYDRHVAVSDRLRYSAIMHGGLCARLAITSWVSGSINSLVQTAITFQLPMCTNKFIDHISCELLAVVRLACVDTSSNEAAIMVSSIVLLMTPFCLVLLSYIRIISTILKIQSREGRKKAFHTCASHLTVVALCYGTTIFTYIQPHSGPSVLQEKLISVFYAIVMPLLNPVIYSLRNKEVKGAWHKLLEKFSGLTSKLGT", "length": 317 }, "evidence": [ { "id": "F1SSI9", "url": "https://omabrowser.org/oma/group/F1SSI9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SSI9", "url": "https://www.uniprot.org/uniprotkb/F1SSI9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SSI9", "url": "https://www.uniprot.org/uniprotkb/F1SSI9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SSI9", "url": "https://www.uniprot.org/uniprotkb/F1SSI9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1SSI9", "url": "https://www.uniprot.org/uniprotkb/F1SSI9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSI9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSI9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSI9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSI9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 290, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSJ2-1", "uniprot_ac": "F1SSJ2", "uniprot_id": "F1SSJ2_PIG", "mass": { "chemical_mass": 33153.0, "monoisotopic_mass": 33153.0 }, "refseq": { "ac": "XP_020934576", "name": "GTPase IMAP family member 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934576" }, "gene_names": [ { "name": "LOC100519177", "type": "recommended", "evidence": [ { "id": "F1SSJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2" } ] }, { "name": "LOC100519177", "type": "synonym", "evidence": [ { "id": "XP_020934576", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934576" } ] } ], "protein_names": [ { "name": "AIG1-type G domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SSJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2/entry#names_and_taxonomy" } ] }, { "name": "GTPase IMAP family member 1", "type": "synonym", "evidence": [ { "id": "XP_020934576", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934576" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSJ2", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100519177", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2", "locus": {} } ], "crossref": [ { "id": "F1SSJ2", "url": "https://alphafold.ebi.ac.uk/entry/F1SSJ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016451", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016451", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01852", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01852", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519177", "url": "https://www.ncbi.nlm.nih.gov/gene/100519177", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006703", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006703", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519177", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519177", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HKGAHYS", "url": "https://omabrowser.org/oma/group/HKGAHYS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSJ2", "url": "https://www.orthodb.org/?gene=F1SSJ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903:SF74", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903:SF74", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04548", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04548", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020934576", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934576", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSJ2", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSJ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRRQKTARNEENPHGSEDLQAALQEPRLRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAEQVAGRQLKQRWGWLLASRWKWPEALGTWWSLSLAGLLSGLILLYGSHWLWGGRS", "length": 299, "header": "tr|F1SSJ2-1|F1SSJ2_PIG Isoform 1 of AIG1-type G domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100519177 PE=3 SV=2 CANONICAL=F1SSJ2-1" }, "isoforms": [ { "isoform_ac": "F1SSJ2-1", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2/entry#F1SSJ2-1", "sequence": { "sequence": "MRRQKTARNEENPHGSEDLQAALQEPRLRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEWDVDVLDTPDLFSSEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTAQDQQAWRGVKALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNNRATGPEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAEQVAGRQLKQRWGWLLASRWKWPEALGTWWSLSLAGLLSGLILLYGSHWLWGGRS", "length": 299, "header": "tr|F1SSJ2-1|F1SSJ2_PIG Isoform 1 of AIG1-type G domain-containing protein OS=Sus scrofa OX=9823 GN=LOC100519177 PE=3 SV=2 CANONICAL=F1SSJ2-1" }, "locus": { "chromosome": "18", "start_pos": 6462348, "end_pos": 6460432, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017914.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017914.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017433.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017433.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ2", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519177", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519177", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N0V9-1", "protein_name": "GTPase IMAP family member 1", "gene_name": "LOC100764847", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGGRKMARDEEIIYGLEEDSPGPRVPQLRLILVGKTGTGKSATGNSILGQKCFLSKLGAVPVTRACSRANRRWAGWYVEVVDTPDVFSSEVLKTDPACIETARCFLLSSPGPHALLLVTQLGRFTTEDCQALAGVKRVFGEQVMARTVVVFTRKEDLAGESLQDYVRCTDNRALRELVAQCGGRVCALNNRATGQELEAQAEQLLGLVAHLVREHGGTCYSNEVYDLVKTLRGADPQDQLTNVAEMVATRMQRPLHTRLLTGLWEWQKSYRKGWRRGVAIFLGVAFLIYLAYRKMPVGDQDNR", "length": 303 }, "evidence": [ { "id": "F1SSJ2", "url": "https://omabrowser.org/oma/group/F1SSJ2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q8WWP7-1", "protein_name": "GTPase IMAP family member 1", "gene_name": "GIMAP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGGRKMATDEENVYGLEENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVLRWAGPEERLRRVAERVAARVQRRPWGAWLSARLWKWLKSPRSWRLGLALLLGGALLFWVLLHRRWSEAVAEVGPD", "length": 306 }, "evidence": [ { "id": "F1SSJ2", "url": "https://omabrowser.org/oma/group/F1SSJ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9C8V2-1", "protein_name": "Immune-associated nucleotide-binding protein 7", "gene_name": "IAN7", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNKGGAQQKGHSSKQAENIVLVGRTGNGKSATGNSLIGKKVFASKAHASGVTMKCQTHGVVTKDGHKINVIDTPGLFDLSVSAEYISKEIVRCLTLAEGGIHAVLLVLSARTRITQEEENTLRTLQALFGSQILDYVVVVFTGGDVLEECKETLEDYLGRDCPTFIKEVMRMSSNRKVVIDNKTHDEGKKAEQVHKLLSLVDDIRRSKCGEAYTDDTYHMIKEESEKLRKHHEELESKNYSEECAAEMKNQSLILYKENLKQMSEQLEKKLKDAAEAQEKALSKMTQENNELNLALKIHIPLPPITPCNIL", "length": 311 }, "evidence": [ { "id": "F1SSJ2", "url": "https://omabrowser.org/oma/group/F1SSJ2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ2", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ2", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ2", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSJ2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 299, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSJ2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSJ2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSJ2" }, { "id": "PS51720", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51720" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AIG1-type G", "eco_id": "ECO_0000259", "start_pos": 25, "end_pos": 229, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSJ4-1", "uniprot_ac": "F1SSJ4", "uniprot_id": "F1SSJ4_PIG", "mass": { "chemical_mass": 39074.0, "monoisotopic_mass": 39074.0 }, "refseq": { "ac": "XP_013846197", "name": "GTPase IMAP family member 2 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013846197" }, "gene_names": [ { "name": "GIMAP2", "type": "recommended", "evidence": [ { "id": "F1SSJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4" } ] }, { "name": "GIMAP2", "type": "synonym", "evidence": [ { "id": "XP_013846197", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013846197" } ] } ], "protein_names": [ { "name": "GTPase IMAP family member 2 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_013846197", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013846197" } ] }, { "name": "GTPase, IMAP family member 2", "type": "synonym", "evidence": [ { "id": "F1SSJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSJ4", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GIMAP2", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4", "locus": { "chromosome": "18", "start_pos": 6396205, "end_pos": 6400489, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016449", "url": "https://www.ensembl.org/id/ENSSSCG00000016449" } ] } } ], "crossref": [ { "id": "F1SSJ4", "url": "https://alphafold.ebi.ac.uk/entry/F1SSJ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016449", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016449", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01852", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01852", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523477", "url": "https://www.ncbi.nlm.nih.gov/gene/100523477", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006703", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006703", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1SSJ4", "url": "https://www.orthodb.org/?gene=F1SSJ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04548", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04548", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_013846197", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013846197", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSJ4", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSJ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARHRFERGDMCFSSHSGPYAENQEAQRARGSELRIILVGKTGTGKSATGNSILGKQVFESRLSAQSLTKTCSVSRGSWRGREMVVIDTPDMFSGRDPSESLYEEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGADVLRHTIVLFTRKEDLEGGSLMHYIHGSDNKALSKLVAACGGRVCAFNNRARGSNRDAQVKELMDLIESLVRAKKGDCYTNQLYSLLTGSECGPGQSEERLKDLKGSFIKYMAIQRCRTTVAKANCLRKALVKTGMRILWGMQVFATWLILVFCVLHRTCSLFYHLPCRICDLLYSFLLIIPQKLMIIFRRTIGMASKTPRS", "length": 348, "header": "tr|F1SSJ4-1|F1SSJ4_PIG Isoform 1 of GTPase, IMAP family member 2 OS=Sus scrofa OX=9823 GN=GIMAP2 PE=3 SV=5 CANONICAL=F1SSJ4-1" }, "isoforms": [ { "isoform_ac": "F1SSJ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4/entry#F1SSJ4-1", "sequence": { "sequence": "MARHRFERGDMCFSSHSGPYAENQEAQRARGSELRIILVGKTGTGKSATGNSILGKQVFESRLSAQSLTKTCSVSRGSWRGREMVVIDTPDMFSGRDPSESLYEEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGADVLRHTIVLFTRKEDLEGGSLMHYIHGSDNKALSKLVAACGGRVCAFNNRARGSNRDAQVKELMDLIESLVRAKKGDCYTNQLYSLLTGSECGPGQSEERLKDLKGSFIKYMAIQRCRTTVAKANCLRKALVKTGMRILWGMQVFATWLILVFCVLHRTCSLFYHLPCRICDLLYSFLLIIPQKLMIIFRRTIGMASKTPRS", "length": 348, "header": "tr|F1SSJ4-1|F1SSJ4_PIG Isoform 1 of GTPase, IMAP family member 2 OS=Sus scrofa OX=9823 GN=GIMAP2 PE=3 SV=5 CANONICAL=F1SSJ4-1" }, "locus": { "chromosome": "18", "start_pos": 6400372, "end_pos": 6396509, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017912.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017912.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017431.5", "url": "https://www.ensembl.org/id/ENSSSCP00000017431.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ4", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ4", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ4", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ4", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ4", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4" } ], "pmid": "" }, { "name": "lipid droplet", "id": "GO:0005811", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005811", "evidence": [ { "database": "UniProtKB", "id": "F1SSJ4", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSJ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 348, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSJ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSJ4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSJ4" }, { "id": "PS51720", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51720" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AIG1-type G", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 234, "start_aa": "Gly", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSK0-1", "uniprot_ac": "F1SSK0", "uniprot_id": "F1SSK0_PIG", "mass": { "chemical_mass": 27104.0, "monoisotopic_mass": 27104.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Potassium channel domain-containing protein", "type": "recommended", "evidence": [ { "id": "F1SSK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSK0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSK0", "url": "https://www.uniprot.org/uniprotkb/F1SSK0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SSK0", "locus": {} } ], "crossref": [ { "id": "F1SSK0", "url": "https://alphafold.ebi.ac.uk/entry/F1SSK0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005077", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005077", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003280", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003280", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11003:SF350", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11003:SF350", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SSK0", "url": "https://www.uniprot.org/uniprotkb/F1SSK0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSK0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLSSQLSYGFDFQNLCLRDKDRTGTSVQNGILLLAYILYIVLGAMIFGALEKDFEVQQRCLAVKTKADFLKNRSNMTREDVQRFVQVMTSIILSGIPPTGNRTAVSFWTFTNSFITCIVTLSTIGYGTIFPKTTGGQMFCVVFAAIGIPLTIILFKHVGMLVYLPFDKFGIYLQHKGINEKNAYLWKNLLFILIGSFFFLILPPFVFMSLENWSYIEGIYYSFNTISTIGFGDYTVGKS", "length": 240, "header": "tr|F1SSK0-1|F1SSK0_PIG Isoform 1 of Potassium channel domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SSK0-1" }, "isoforms": [ { "isoform_ac": "F1SSK0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK0/entry#F1SSK0-1", "sequence": { "sequence": "MSLSSQLSYGFDFQNLCLRDKDRTGTSVQNGILLLAYILYIVLGAMIFGALEKDFEVQQRCLAVKTKADFLKNRSNMTREDVQRFVQVMTSIILSGIPPTGNRTAVSFWTFTNSFITCIVTLSTIGYGTIFPKTTGGQMFCVVFAAIGIPLTIILFKHVGMLVYLPFDKFGIYLQHKGINEKNAYLWKNLLFILIGSFFFLILPPFVFMSLENWSYIEGIYYSFNTISTIGFGDYTVGKS", "length": 240, "header": "tr|F1SSK0-1|F1SSK0_PIG Isoform 1 of Potassium channel domain-containing protein OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SSK0-1" }, "locus": { "chromosome": "1", "start_pos": 188147920, "end_pos": 188121156, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005595.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005595.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005455.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005455.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSK0", "url": "https://www.uniprot.org/uniprotkb/F1SSK0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "outward rectifier potassium channel activity", "id": "GO:0015271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015271", "evidence": [ { "database": "UniProtKB", "id": "F1SSK0", "url": "https://www.uniprot.org/uniprotkb/F1SSK0" } ], "pmid": "" }, { "name": "potassium ion leak channel activity", "id": "GO:0022841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022841", "evidence": [ { "database": "UniProtKB", "id": "F1SSK0", "url": "https://www.uniprot.org/uniprotkb/F1SSK0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SSK0", "url": "https://www.uniprot.org/uniprotkb/F1SSK0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "potassium ion transmembrane transport", "id": "GO:0071805", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071805", "evidence": [ { "database": "UniProtKB", "id": "F1SSK0", "url": "https://www.uniprot.org/uniprotkb/F1SSK0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 213, "end_pos": 215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" }, { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSK0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 240, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSK0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSK0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSK0" }, { "id": "PF07885", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07885" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Potassium channel", "eco_id": "ECO_0000259", "start_pos": 106, "end_pos": 162, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 213, "end_pos": 215 }, { "start_pos": 73, "end_pos": 75 }, { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSK3-1", "uniprot_ac": "F1SSK3", "uniprot_id": "F1SSK3_PIG", "mass": { "chemical_mass": 17499.0, "monoisotopic_mass": 17499.0 }, "refseq": {}, "gene_names": [ { "name": "TOMM20L", "type": "recommended", "evidence": [ { "id": "F1SSK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSK3" } ] } ], "protein_names": [ { "name": "TOMM20-like protein 1", "type": "recommended", "evidence": [ { "id": "F1SSK3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSK3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSK3", "url": "https://www.uniprot.org/uniprotkb/F1SSK3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TOMM20L", "url": "https://www.uniprot.org/uniprotkb/F1SSK3", "locus": { "chromosome": "1", "start_pos": 187486729, "end_pos": 187475006, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005075", "url": "https://www.ensembl.org/id/ENSSSCG00000005075" } ] } } ], "crossref": [ { "id": "F1SSK3", "url": "https://alphafold.ebi.ac.uk/entry/F1SSK3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005075", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005075", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MQEIHKG", "url": "https://omabrowser.org/oma/group/MQEIHKG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12430:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12430:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02064", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02064", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SSK3", "url": "https://www.uniprot.org/uniprotkb/F1SSK3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSK3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGVRTVLGLLAALTACGAVAFFGYCVYFDRKRRGDPAFKRRLREKRRAQQQKAEGRGAQLWDPAKNEKLQELFLQEVQMGEFWLSRGEHQMGVEHLSNALLVCGQPQELLKVFKHTLPPKVFEMLLHKIPLICQQFEADMNEQECLEDDPD", "length": 152, "header": "tr|F1SSK3-1|F1SSK3_PIG Isoform 1 of TOMM20-like protein 1 OS=Sus scrofa OX=9823 GN=TOMM20L PE=3 SV=1 CANONICAL=F1SSK3-1" }, "isoforms": [ { "isoform_ac": "F1SSK3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSK3/entry#F1SSK3-1", "sequence": { "sequence": "MPGVRTVLGLLAALTACGAVAFFGYCVYFDRKRRGDPAFKRRLREKRRAQQQKAEGRGAQLWDPAKNEKLQELFLQEVQMGEFWLSRGEHQMGVEHLSNALLVCGQPQELLKVFKHTLPPKVFEMLLHKIPLICQQFEADMNEQECLEDDPD", "length": 152, "header": "tr|F1SSK3-1|F1SSK3_PIG Isoform 1 of TOMM20-like protein 1 OS=Sus scrofa OX=9823 GN=TOMM20L PE=3 SV=1 CANONICAL=F1SSK3-1" }, "locus": { "chromosome": "1", "start_pos": 187485758, "end_pos": 187475022, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005592.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005592.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005452.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005452.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSK3", "url": "https://www.uniprot.org/uniprotkb/F1SSK3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1M1G5-1", "protein_name": "TOMM20-like protein 1", "gene_name": "TOMM20L", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPCVRTVLGLLAACGAIAFLGYCIYFDRSRRGDPAFKRRLREKRRAQQRKAEGRGAQLWDPAKNEKLQEFFLQEVRMGELWLSRGEHRMGVEHLSNALLVCGQPQELLKVFKHTLPPKVFEMLLHKIPLICQQFEADMNEQEYLEDDRD", "length": 149 }, "evidence": [ { "id": "F1SSK3", "url": "https://omabrowser.org/oma/group/F1SSK3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A8C2MBZ1-1", "protein_name": "TOMM20-like protein 1", "gene_name": "Tomm20l", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPGIRLGVGLLAALATGGAVALLGYCVYLDRRRRRDPALRRCLRDKRRAEQPKAQARARQLWDPAKKEKLQEFFLQEVKMGKLCLTRGEHGMGMEHLTNALLVCGQPKELLTFFKHSLPPEVFQMLLCKIPLICQQLEADMYEQKSLKDDPD", "length": 152 }, "evidence": [ { "id": "F1SSK3", "url": "https://omabrowser.org/oma/group/F1SSK3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q6UXN7-1", "protein_name": "TOMM20-like protein 1", "gene_name": "TOMM20L", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPSVRSLLRLLAAAAACGAFAFLGYCIYLNRKRRGDPAFKRRLRDKRRAEPQKAEEQGTQLWDPTKNKKLQELFLQEVRMGELWLSRGEHRMGIQHLGNALLVCEQPRELLKVFKHTLPPKVFEMLLHKIPLICQQFEADMNEQDCLEDDPD", "length": 152 }, "evidence": [ { "id": "F1SSK3", "url": "https://omabrowser.org/oma/group/F1SSK3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "F1SSK3", "url": "https://www.uniprot.org/uniprotkb/F1SSK3" } ], "pmid": "" }, { "name": "protein targeting", "id": "GO:0006605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006605", "evidence": [ { "database": "UniProtKB", "id": "F1SSK3", "url": "https://www.uniprot.org/uniprotkb/F1SSK3" } ], "pmid": "" }, { "name": "protein import into mitochondrial matrix", "id": "GO:0030150", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030150", "evidence": [ { "database": "UniProtKB", "id": "F1SSK3", "url": "https://www.uniprot.org/uniprotkb/F1SSK3" } ], "pmid": "" }, { "name": "tRNA import into mitochondrion", "id": "GO:0016031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016031", "evidence": [ { "database": "UniProtKB", "id": "F1SSK3", "url": "https://www.uniprot.org/uniprotkb/F1SSK3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial outer membrane translocase complex", "id": "GO:0005742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005742", "evidence": [ { "database": "UniProtKB", "id": "F1SSK3", "url": "https://www.uniprot.org/uniprotkb/F1SSK3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mitochondrion targeting sequence binding", "id": "GO:0030943", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030943", "evidence": [ { "database": "UniProtKB", "id": "F1SSK3", "url": "https://www.uniprot.org/uniprotkb/F1SSK3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSK3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 152, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSK3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSK3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSN1-1", "uniprot_ac": "F1SSN1", "uniprot_id": "F1SSN1_PIG", "mass": { "chemical_mass": 43936.0, "monoisotopic_mass": 43936.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Taste receptor type 2", "type": "recommended", "evidence": [ { "id": "F1SSN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSN1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSN1", "url": "https://www.uniprot.org/uniprotkb/F1SSN1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SSN1", "locus": {} } ], "crossref": [ { "id": "F1SSN1", "url": "https://alphafold.ebi.ac.uk/entry/F1SSN1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016433", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016433", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11394:SF69", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11394:SF69", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05296", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05296", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SSN1", "url": "https://www.uniprot.org/uniprotkb/F1SSN1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SSN1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHACKQLRVSRSWERFACQGKSQRVSFQIREGGAGEGGGGEVGGCWLVALLLHASKGRASESVVSAARLAQRGCVSLPMWPSTAEPVVPMLVFLVVFVLESLAALLQNGFIVAVLGREWGRRRTLPAGDMIVAGLAASRFCLHGMALLNNLLTFFGLSFKIYFNTPWDFLNTLTFWLTAWLAVFYCMKIAFFSHPAFLWLKWRVSCSVPRMLLGSLLLSGVSTVAFTAEHAAQLRPARRSHGNDTLADRWQSSSWYFFLARVVLLWCVPFLLFLASTLLLMFSLQRHLGQMRDRSAGLRDASTQAHTMALKSLAFFLVFHTSYFLFLIVVIRNSVASQNRWRWAWEVVTYTGMCLHSSILVQSSPKLRKALKERLRRAPGKELSGSRYQSQ", "length": 391, "header": "tr|F1SSN1-1|F1SSN1_PIG Isoform 1 of Taste receptor type 2 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SSN1-1" }, "isoforms": [ { "isoform_ac": "F1SSN1-1", "url": "https://www.uniprot.org/uniprotkb/F1SSN1/entry#F1SSN1-1", "sequence": { "sequence": "MHACKQLRVSRSWERFACQGKSQRVSFQIREGGAGEGGGGEVGGCWLVALLLHASKGRASESVVSAARLAQRGCVSLPMWPSTAEPVVPMLVFLVVFVLESLAALLQNGFIVAVLGREWGRRRTLPAGDMIVAGLAASRFCLHGMALLNNLLTFFGLSFKIYFNTPWDFLNTLTFWLTAWLAVFYCMKIAFFSHPAFLWLKWRVSCSVPRMLLGSLLLSGVSTVAFTAEHAAQLRPARRSHGNDTLADRWQSSSWYFFLARVVLLWCVPFLLFLASTLLLMFSLQRHLGQMRDRSAGLRDASTQAHTMALKSLAFFLVFHTSYFLFLIVVIRNSVASQNRWRWAWEVVTYTGMCLHSSILVQSSPKLRKALKERLRRAPGKELSGSRYQSQ", "length": 391, "header": "tr|F1SSN1-1|F1SSN1_PIG Isoform 1 of Taste receptor type 2 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F1SSN1-1" }, "locus": { "chromosome": "18", "start_pos": 5568482, "end_pos": 5567310, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017894.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017894.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017413.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017413.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSN1", "url": "https://www.uniprot.org/uniprotkb/F1SSN1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SSN1", "url": "https://www.uniprot.org/uniprotkb/F1SSN1" } ], "pmid": "" }, { "name": "bitter taste receptor activity", "id": "GO:0033038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033038", "evidence": [ { "database": "UniProtKB", "id": "F1SSN1", "url": "https://www.uniprot.org/uniprotkb/F1SSN1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SSN1", "url": "https://www.uniprot.org/uniprotkb/F1SSN1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of bitter taste", "id": "GO:0001580", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001580", "evidence": [ { "database": "UniProtKB", "id": "F1SSN1", "url": "https://www.uniprot.org/uniprotkb/F1SSN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSN1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 391, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSN1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSN1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 243, "end_pos": 245 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSN3-1", "uniprot_ac": "F1SSN3", "uniprot_id": "F1SSN3_PIG", "mass": { "chemical_mass": 51949.0, "monoisotopic_mass": 51949.0 }, "refseq": { "ac": "XP_003134592", "name": "inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134592" }, "gene_names": [ { "name": "GALNTL5", "type": "recommended", "evidence": [ { "id": "F1SSN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSN3" } ] }, { "name": "GALNTL5", "type": "synonym", "evidence": [ { "id": "XP_003134592", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134592" } ] } ], "protein_names": [ { "name": "Polypeptide N-acetylgalactosaminyltransferase like 5", "type": "synonym", "evidence": [ { "id": "F1SSN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSN3/entry#names_and_taxonomy" } ] }, { "name": "inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003134592", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134592" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSN3", "url": "https://www.uniprot.org/uniprotkb/F1SSN3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GALNTL5", "url": "https://www.uniprot.org/uniprotkb/F1SSN3", "locus": { "chromosome": "18", "start_pos": 5353769, "end_pos": 5433814, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016431", "url": "https://www.ensembl.org/id/ENSSSCG00000016431" } ] } } ], "crossref": [ { "id": "F1SSN3", "url": "https://alphafold.ebi.ac.uk/entry/F1SSN3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016431", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016431", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd02510", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02510", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515695", "url": "https://www.ncbi.nlm.nih.gov/gene/100515695", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515695", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515695", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FNWHLQF", "url": "https://omabrowser.org/oma/group/FNWHLQF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSN3", "url": "https://www.orthodb.org/?gene=F1SSN3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11675", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11675", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11675:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11675:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00535", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00535", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-913709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003134592", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003134592", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSN3", "url": "https://www.uniprot.org/uniprotkb/F1SSN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRNVIIQSLLYGSLTLGVWTALFGIYFHHNNVKNQEKKIQTKGNPLIWSLGEKLQEQSIHGSMQIRRPRERLNEDETEEQKPISVLGEDFNYTDTELIYGYMKYGFNHIVSKSLGNYRNVPDSRNKMCHQKHYPANLPTASIIICFHNEEFNALLRTVSSIMTLTPHHIIEEIILVDDMSEYDDLKEKLDYHLEIFRGKIKVIRNKKREGLIRARLVGASRASGDILVFLDSHCEVNKIWLEPLLDAIVKDPKMVVCPIMDVIDYVTLEYKPSPVVRGVFNWHLQFEWDRVFSYEMDGPDGPTRPIRSPAMVGGLFAIHRHYFNEIGQYDKGMNLWGGENLELSLRIWMCGGQLFLLPCSRVGHINKPYFTNQGEIKKAMAYNNLRIVHVWLDEYKEQFFLQNPRLKSLAYGNVSERVELRKRLGCKSFQWYLDTVFPELETSNSI", "length": 446, "header": "tr|F1SSN3-1|F1SSN3_PIG Isoform 1 of Polypeptide N-acetylgalactosaminyltransferase like 5 OS=Sus scrofa OX=9823 GN=GALNTL5 PE=3 SV=1 CANONICAL=F1SSN3-1" }, "isoforms": [ { "isoform_ac": "F1SSN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SSN3/entry#F1SSN3-1", "sequence": { "sequence": "MRNVIIQSLLYGSLTLGVWTALFGIYFHHNNVKNQEKKIQTKGNPLIWSLGEKLQEQSIHGSMQIRRPRERLNEDETEEQKPISVLGEDFNYTDTELIYGYMKYGFNHIVSKSLGNYRNVPDSRNKMCHQKHYPANLPTASIIICFHNEEFNALLRTVSSIMTLTPHHIIEEIILVDDMSEYDDLKEKLDYHLEIFRGKIKVIRNKKREGLIRARLVGASRASGDILVFLDSHCEVNKIWLEPLLDAIVKDPKMVVCPIMDVIDYVTLEYKPSPVVRGVFNWHLQFEWDRVFSYEMDGPDGPTRPIRSPAMVGGLFAIHRHYFNEIGQYDKGMNLWGGENLELSLRIWMCGGQLFLLPCSRVGHINKPYFTNQGEIKKAMAYNNLRIVHVWLDEYKEQFFLQNPRLKSLAYGNVSERVELRKRLGCKSFQWYLDTVFPELETSNSI", "length": 446, "header": "tr|F1SSN3-1|F1SSN3_PIG Isoform 1 of Polypeptide N-acetylgalactosaminyltransferase like 5 OS=Sus scrofa OX=9823 GN=GALNTL5 PE=3 SV=1 CANONICAL=F1SSN3-1" }, "locus": { "chromosome": "18", "start_pos": 5415207, "end_pos": 5354889, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017892.4", "url": "https://www.ensembl.org/id/ENSSSCT00000017892.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017411.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017411.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 303, "start_aa": "Thr", "end_pos": 303, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr303", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSN3", "url": "https://www.uniprot.org/uniprotkb/F1SSN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515695", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515695", "resource": "KEGG Pathway" }, { "id": "R-SSC-913709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-913709", "resource": "Reactome", "description": "O-linked glycosylation of mucins" } ], "orthologs": [ { "uniprot_canonical_ac": "G3N0Q1-1", "protein_name": "Polypeptide N-acetylgalactosaminyltransferase like 5", "gene_name": "GALNTL5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRNVIIQCLLCASLTFGIWIAVFNIYLHYNHVKKQEKIQEKGNPLIWSLGEKLQSKPDSVHLPRAYNVRVERASEDEPAEPKLLLSSGENFNYSIPEVIHGYSTYGFNSIISKNLGHYRNVPDTRNVMCQKKMYPAKLPTASIIICFHNEEFNALFRTLSSIMTLTQQYILEEIILVDDMSDFDDLKEKLDYHLEIFRGKIKLIRNKKREGLIRARMTGASHASGDVLVFLDSHCEVNKVWLEPLLNAIAKDPKMVVCPLIDVIDYMTLEYQPSPIVRGAFNWRLEFKWDHVLSYEIEGPEGPTTPIRSPAMAGGIFAINRHYFNEIGQYDKGMNLWGGENLELSLRIWMCGGQLYVIPCSRVGHINRQHMTNRFEIMEVVEYNNLRLVHTWLDEYKGQFFLRRPALKSAAYGNISERVELRKRLGCKSFQWYLDTIFPELEASKAIS", "length": 448 }, "evidence": [ { "id": "F1SSN3", "url": "https://omabrowser.org/oma/group/F1SSN3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7Z4T8-1", "protein_name": "Inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5", "gene_name": "GALNTL5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRNAIIQGLFYGSLTFGIWTALLFIYLHHNHVSSWQKKSQEPLSAWSPGKKVHQQIIYGSEQIPKPHVIVKRTDEDKAKSMLGTDFNHTNPELHKELLKYGFNVIISRSLGIEREVPDTRSKMCLQKHYPARLPTASIVICFYNEECNALFQTMSSVTNLTPHYFLEEIILVDDMSKVDDLKEKLDYHLETFRGKVKIIRNKKREGLIRARLIGASHASGDVLVFLDSHCEVNRVWLEPLLHAIAKDPKMVVCPLIDVIDDRTLEYKPSPLVRGTFDWNLQFKWDNVFSYEMDGPEGSTKPIRSPAMSGGIFAIRRHYFNEIGQYDKDMDFWGRENLELSLRIWMCGGQLFIIPCSRVGHISKKQTGKPSTIISAMTHNYLRLVHVWLDEYKEQFFLRKPGLKYVTYGNIRERVELRKRLGCKSFQWYLDNVFPELEASVNSL", "length": 443 }, "evidence": [ { "id": "F1SSN3", "url": "https://omabrowser.org/oma/group/F1SSN3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D4M9-1", "protein_name": "Inactive polypeptide N-acetylgalactosaminyltransferase-like protein 5", "gene_name": "Galntl5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSVIIQGLFCGFLAIGLWASMLLLFLHLEQEDMLENEKEELLKKRSLGKNAHQQTRHSEDVTHDEVNFSDPELIQGLRRYGLNAIMSRRLGIEREVPDSRDKICQQKHYPFNLPTASIIICFYNEEFNTLLRAVSSVVNLSPQHLLEEIILVDDMSEFDDLKDKLDYYLEIFRGKVKLIRNKKREGLIRSKMIGASRASGDILVFLDSHCEVNRVWLEPLLHAIAKDHKMVVCPIIDVINELTLDYMAAPIVRGAFDWNLNLRWDNVFAYELDGPEGPSTPIRSPAMTGGIFAINRHYFNELGQYDNGMDICGGENVELSLRIWMCGGQLFILPCSRVGYNSKALSQHRRANQSALSRNLLRVVHVWLDEYKGNFFLQRPSLTYVSCGNISERVELRKRLGCKSFQWYLDNIFPELEPFNTERKRKKNRF", "length": 431 }, "evidence": [ { "id": "F1SSN3", "url": "https://omabrowser.org/oma/group/F1SSN3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SSN3", "url": "https://www.uniprot.org/uniprotkb/F1SSN3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spermatid development", "id": "GO:0007286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007286", "evidence": [ { "database": "UniProtKB", "id": "F1SSN3", "url": "https://www.uniprot.org/uniprotkb/F1SSN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" }, { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSN3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 446, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSN3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSN3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSN3" }, { "id": "PF00535", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00535" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Glycosyltransferase 2-like", "eco_id": "ECO_0000259", "start_pos": 141, "end_pos": 323, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [ { "glytoucan_ac": "G00027JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00030VN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00031MO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00032MO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00033MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00034MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00034UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00035MO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00036MO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00037MO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00038MO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00039MO", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G00040MO", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G00041IL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00041MO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G00042MO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G00043MO", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G00044MO", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G00063MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00069YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00079IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00094SE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00112IO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00139WK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00140UB", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G00140YZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00164QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00196CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00219VH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00230IL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00234GG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00238CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00241VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00249XF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00257RE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00257UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00277SO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00287UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00288RP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G00318OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00321UH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00335JE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00371DJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00372ZO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00376RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00379PJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G00383NC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00387BU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00390EC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G00394CR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00423TL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00428HK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00430ZK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00464AQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00467QU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00468NI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00496OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00520NI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00523PT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G00542QA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00546ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00560KG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00567EI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G00569WM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00598IA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00641XC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G00652BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00653TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00654GN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00660CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00675GF", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G00682IE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00707RC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00728SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00729SA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00745CN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00745GK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G00754TS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00769YD", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G00771KB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00789VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00802PL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G00803TF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00852XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00862ZV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00872ZT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00891GP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00895EF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00897BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00901NZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G00907IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00924FH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G00932UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00944OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00950FJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00952LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G00967VH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G00978GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00979XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00980BE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G00987AB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G00997UP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01004EH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01033BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01040ZV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01044ZK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01056RH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01097FM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01102LZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01116MS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01140NK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G01155GN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01203BZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01236CM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01243KR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01282UD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01284WP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01287FH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01302LF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01316HN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01325OU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01351CD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01356MD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01357LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01362WX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01376HR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01416HI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01437WY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01445XB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01447VG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01450RG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01453BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01455VM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01457KB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01464ES", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01471GI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01476LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01518MI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01520KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01528QE", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G01532FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01534TU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01546PE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01567JL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01577DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01584VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01608UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01614ZM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01618EL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01625GQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01643LM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01657UH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01665LU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01666SB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01674VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01682LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01707KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01710XJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01722HI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01725BW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01726AR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01736JN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01744JD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01747FB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01749YL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01753LJ", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G01759NM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01763RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01769GP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01784XC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01801SZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G01802HL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01822KD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G01856DB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G01864UR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01866QN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01869FL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01877VI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G01877XT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G01879FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01912GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01922RI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G01923FT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G01999VP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02020YO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02025JE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02032MW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02033VO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02042KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02066SJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02070ZG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02078ZZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02089YL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02092XA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02096RK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02127XA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02131QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02150AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02151GJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02161CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02180YM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02188HQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02230VA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02239FM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02244ID", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02256MB", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G02275IQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02288EO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02289NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02297WO", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G02305XD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02316AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02322YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02353KU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02366EM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02370LQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02377RY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02379AH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02387FV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02393LQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02398MD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G02402NL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02403ZU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02404UN", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G02405SM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02442MH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02452RJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02460JI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02471VE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G02522JF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02530VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02539TH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02550PY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02559GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02562EQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02563ZC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02581SF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02586QB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G02594WS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02595UE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02608NW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02613LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02624KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02637UJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02642GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02651QY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02684WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02701ML", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G02702PO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02725GF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02729OV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02747VH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G02752WS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02764NO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02799CL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02841PN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02844SX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02856QE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02860LZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G02864GJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02873KW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G02906NO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G02912JK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02915JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02928DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02937FA", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G02942YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02953CZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G02972HU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02985MG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G02990AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03003KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03016AA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03016BW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03018QF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03024EJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03027LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03035VB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03049NB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03052ZR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03061QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03127JO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03129RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03140AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03146JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03150CV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G03163GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03168RN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03171HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03172PR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03197WV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03200OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03211IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03213HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03249SR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03263DS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03266UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03272YK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03278MV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03289LB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03304QB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03325JN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03339IQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03340FG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03379XU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03412UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03425VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03429MV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03433NI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03438WE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03462LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03466XE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03468CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03468RQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03470GM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03484HH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03494YC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03505EQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03513BY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G03520RT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03542TR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03549GG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03549GS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03574EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03575DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03588SZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03591CN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03591EN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03603IS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03605AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03644PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03651GB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03670RH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03674DU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G03714XC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03720YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03753TG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G03766GQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G03770XP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G03792OA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G03796EF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03819IX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03825PZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G03825XC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03840OO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03847RK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03852KN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03877AD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G03900NK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03912AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03916DL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03923CH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G03941EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03950FF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G03968JR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G03975EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G03989SP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G03998SF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04002YJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04014AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04014FP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04016KC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04043RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04062VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04074KJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04088QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04091CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04114CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04116CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04130SK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04137HF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04181GO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04185QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04210UW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04241UF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04267RL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04267XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04269FO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G04289KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04298QC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04324CR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04337AE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04339EV", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G04348LJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04352JI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04402ZV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04406VW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04407AH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G04421LE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04422XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04428BJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04438UN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04450CG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04459VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04464LR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04473OG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G04478DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04483QG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04490OD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04505IS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04512BK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04513DL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04522ZB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04527KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G04531ET", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04531NI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04534UP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04536JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04540PY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04547KP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04548YV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04557PM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04564SK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04608YG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04631XC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G04638IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04653HU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04699IC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G04712IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04734LP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04737UA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G04760HF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G04760XP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04765GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04820ZO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04838ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04842IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04849OP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G04908IA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G04917SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04949CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G04970RV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G04984PI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05002AF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05026EL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G05028TR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05096XM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05106AU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05107KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05128BK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05159DR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G05180BW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05183GM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05184IQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05187DJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05189AI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05191EM", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G05208JP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05220ZJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05231YG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05234QD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05235KE", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G05239GX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05252QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05252XR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05259MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05268QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05278GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05286IK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05324AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05344UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05361BA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G05367PQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05367SU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05374TU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05378UG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05379WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05380VG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05384EB", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G05394VU", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G05397XY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G05400IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05402FG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05405HZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05410WY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05411CD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05412ZS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05413EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05428SU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05456PR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05490PJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05543BI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05562YT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05570RS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05573WE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05597SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05620JQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05620VJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05633TS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05644LC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05665LK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05669ME", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G05670VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05675LB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05690OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05694MA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05694XS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G05724WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05767GS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05774PX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05784LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05784QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05785JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05801MA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05819IS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05827UQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G05835TV", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G05848DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05874CB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G05882RK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G05892LT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G05918XD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G05955CJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05970FR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G05987PT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G05994BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06022CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06036CF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G06057IP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06067PC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06087NW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G06090HW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G06104DC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G06116KH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G06149AZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06161ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06162AQ", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G06172PE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06175CN", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G06187MQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06225LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06230AO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G06233HK", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G06240OP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06248CM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G06275FY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06291OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06300IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06303QR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G06317RG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06339MJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06341YK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06342XU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G06366AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06404BM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06408QU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06411SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06415PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06435TQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06439PI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06448OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06449JT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G06453RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06460LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G06463OO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06477WS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G06499NY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06503AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06507BB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06523WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06558RX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06563KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06566UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06577DG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06593KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06601IE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G06624ZC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G06646VA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06650FN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G06654RA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06661NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06662OV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06662ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06676BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06710OE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06755AP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06768ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06783AN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G06786CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06810ZN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06840BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06864JC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06893QX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06893ST", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G06938KF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G06963BI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G06967GN", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G06969QL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G06990BX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G06990MN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07014IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07025FE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G07061BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07061YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07068RQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07078LK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07082VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07099MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07099ZR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07100DF", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G07104FL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G07141OG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07145VL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07164WO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07166NN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G07176DR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G07191NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07210GE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G07247VM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07275AV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07281UF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07285FW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07293JT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07304BE", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G07304ME", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07360NF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G07393CN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G07395MI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G07398EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07405CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07430HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07435LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07443RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07479EG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07480TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07489IL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07527DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07532UC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07543GD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07570IW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G07578MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07610EM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07610JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G07611FT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07620UR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G07641WS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G07646UD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G07676GT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07677VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07680WY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07689ET", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07692KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07695IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07724XN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G07764JS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07779GP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07784RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07789RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07808ZA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G07819HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07820YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07831TR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07858AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07869UA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07898UR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07904XW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07932PU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G07937GC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G07943FD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07981IJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G07982LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G07990CD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G07995UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08016YO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08033FI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08043FC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G08046LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08055MG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08059ZN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08083HB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G08107SW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G08115PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08116AL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G08131WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08140FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08178PQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08190JB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G08201TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08201TY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08224KD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08244HV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08244KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08244YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08246QI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G08264JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08265CU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08267YC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08275UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08306FC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08308ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08358DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08358SM", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G08366OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08371CD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08382XT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08397LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08403NB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G08425VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08426DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08459GF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G08465VN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08514IA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G08516DU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08524NC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G08566CQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08569VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08577GJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G08606TA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G08634HO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G08660AA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08670DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08697NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08700OQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08715FO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08728GE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08735WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G08737TR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G08744HU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08758GZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G08772WL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08784DO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08807HM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G08817RK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G08862JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08892TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08941LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G08952PH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09008LJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09053BO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09060TD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09071DK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09079WY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09108HO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G09117FY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09125MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09127IA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09130SS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09139MX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09147XQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09153LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09154YX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09163PD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09182TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09185DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09198TC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09207SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09224US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09226UP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09234AI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09283JE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09287HW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09367JM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09403AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09423RD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09424UT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09425PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09441IP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G09441VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09480OP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G09508VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09520ZQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G09575SG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09577ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09583DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09588MX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09620VM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09640VJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09642IX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09663DE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09678FF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09682KX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G09698FP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09756YR", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G09761AD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09764PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09767ET", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09778JK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G09781FH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09782EI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09786SL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09793BH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09805DP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09805UR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09812PB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09822LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09831CM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G09845DR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G09859LE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G09892NW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09911WJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G09921KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09938IH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09941BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G09947VX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G09959OR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09969GE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G09980KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10013HB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10023KT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10082ZS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10104VB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G10110YZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G10119AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10148CV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10174LI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10177BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10180QX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10199RS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10199RZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10204GU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10225UW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10247HK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G10257XT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10269QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10287KB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10290UA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10300QZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G10302UO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10325PN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10341DR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G10343DO", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G10372YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10388YZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10408DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10408ZL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10436HD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G10453CW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G10480CH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G10487BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10514PF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10515PV", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G10526QU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G10552FV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10564SS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G10581YA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10604KJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10608NX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10630CU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G10643IE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10651WD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10665MP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10679DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10687EF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10688VV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10698NC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10705PR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10706IL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10709GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10736VG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G10739QG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G10746HE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G10768ZE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10787GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10816YX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10818TP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G10831FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10836AU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10859BP", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G10924UK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G10925II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10931ML", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G10939BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10954DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G10954XM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G10993EM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G11031EI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G11039UJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G11061BV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G11061VC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11078XZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11083DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11091XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11104AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11105TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11120EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11122ZF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G11143QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11160KY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G11198HA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11201QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11210ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11218TW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11220GW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G11234AI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G11237JJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11253PI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11253WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11254WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11259WE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11260US", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G11263YZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11265MB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11272SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11276SJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G11288UE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11302IV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G11340UD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G11343WR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11349QC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11350ZR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11366PY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11373TT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11374GO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G11377IU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11382ZM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G11411KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11427UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11457RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11466IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11466SI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G11482NO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G11589YK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11603CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11647UD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G11669SL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G11679KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11683WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11699WH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11704PO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11730TK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11737JS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11778HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11795BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11819NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11821VL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G11827HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11830CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11846US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11848VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11863CH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G11863HW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11876US", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G11889PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11905CY", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G11907PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11914JH", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G11932BY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G11936KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11937GI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G11940TK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G11980DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G11985MT", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G12000YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12019PJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G12020PN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G12032IY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12035CL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12040RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12074QJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12075FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12080OQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12100NK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G12111NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12114XT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G12121CY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12122TT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12124FY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G12133SZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12150EL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12190QO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12193VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12204PG", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G12230UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12232DG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G12232OT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12233LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12339WZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12340JM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12347FB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G12347ZH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G12350CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12357FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12365RQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12389NM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12396GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12405JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12428MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12429DG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G12455XO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12486YB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G12493OW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12493UH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12510ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12525VG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12526XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12541EY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12548MD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12573LN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12573WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12574EB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12604MY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12610QL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12616PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12619FL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12627CA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12637ID", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12678YV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12679QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12680ES", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12696IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12697UE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12719GG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12720KS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12726EP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12744WJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12756LW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12761QA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12772KY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G12781XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12785ZM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G12813VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12835RP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G12847GY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G12848QL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12850TQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12891KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G12893IS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G12900GB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G12902SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G12944WQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G12962XA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G12969QE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G13031IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13041DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13041EF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13063NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13089IH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13101AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13102EV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13104VJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13122AV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G13125OG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G13159TN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13168IS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13179DW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G13179FD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13204HV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13205MF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13214IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13223JD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13230RR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13233BL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G13236VB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13251BD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13258AZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13260JU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13260WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13292XY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13305DT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G13346FI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13346PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13355CI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13359QL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13442BO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G13458KB", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G13477DY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13483MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13496UJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13500IP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13511YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13520PN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G13523IF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13523SK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13600HM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13609NI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13610SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13616KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13625HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13635IS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13640RX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13666UP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G13684QB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13695SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13715AS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G13717KM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G13760QV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13761UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13764NR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13764RO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13767YY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13782XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13785BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13789ZE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G13791TE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G13813GW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13814UH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13816ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13824WQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G13836FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13836RN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13846OY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G13858YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13863XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13872KR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13885FQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G13890JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13890RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13894RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13934YV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G13968BO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G13976VB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G13985TC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G14009XM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14014EQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14023SP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14053SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14090RI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14119CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14125ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14130OH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14133PN", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G14138XB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14188TW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14191ZT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G14195FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14205YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14227RA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G14238UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14250HG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14259XA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14296RM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14302JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14303LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14316XA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14317JF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G14346JI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14375KO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14379EB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14380OJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G14392HC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14442NU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14446LS", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G14453LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14513HL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G14514DY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14515IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14524OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14532FN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G14533ZS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14555ST", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14558IN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14567YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14591XM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14597KA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14606ZK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G14623FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14645TH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14646AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14660IB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G14676JD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14689BA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14693JJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14708HL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G14711SS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14722QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14781HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14812IG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14815WH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14829OL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G14838MX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G14840QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14845YK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G14847GM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14868UU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G14870EV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G14911GR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14919CV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14920PG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14931HB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14955CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14965PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14973GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G14978ZY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G14997LZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15003XX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15011KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15023FV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15030FS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G15031GX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15033WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15048BR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15048IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15050SW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15053SL", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G15073KL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15086ZG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15090NS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15099DI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15144TI", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G15148GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15173TI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15178AV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15178NA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G15197TW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15208OO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15209ON", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G15220QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15249CA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15270BO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15271GT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15307GJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15343IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15367TG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15379YZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15393WU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15442IV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15446MA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15454NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15467EU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15484AW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15509XY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15555MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15563FY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G15570UM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15577GZ", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G15577KP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15618NB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15626ED", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15631KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15633AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15635CJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15642UW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15648GT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15654DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15667KI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15684YZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G15690OZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G15706DW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G15714MJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G15718TL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15733CB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15756SW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15772KA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15779LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15794WJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15807NZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G15813JZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15819YF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15843BD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15848IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15849KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15867AH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G15867XT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G15870AR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15876HU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15882EZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G15935OB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G15949YP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G15952WX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G15985WB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16014UJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16040DE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16040ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16056IF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G16059HK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16078YI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16079QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16111VB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16135DK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16136DR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16214HG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16265YZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16268BN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16270SN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16292QQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16296RP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16327YW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16331AD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16344NR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16345OH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16365JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16370GQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16373HI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16413MV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16415EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16438UK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16440EL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16456ZV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G16458JH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16459CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16463NX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16470PS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16488DY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16502FJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16503YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16506MW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G16527XF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G16530WZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16536QD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G16558ON", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16560KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16568AK", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G16576OQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16598VU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16607CP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16609LV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16612QG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16617GO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16617HJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16656BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16682CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16687RY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16696HU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16699MZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G16706SR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16709FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16739XD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16756OS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16768QV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16793QH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16816IR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G16827DR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16831PL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16832WQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16837KL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G16867VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16904OH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16909IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16934VM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16938RD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16943AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16964KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16970LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G16975LY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16982ND", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G16983XV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G16984QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17024OR", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G17034UD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17039UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17039ZC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17041QN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17050CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17054FK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17055DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17055PP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17069VW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G17077YF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17089DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17091SL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G17096JA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17100VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17126MK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17133RP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17156PI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G17158TZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G17173XA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17218WW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17236TT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G17241OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17251XF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17269LY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17280PS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17294JY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17300DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17318DR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17320JG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17326TY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17331IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17331WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17343QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17346NI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17350RY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17359VK", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G17361GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17388RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17401LE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17405ZE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17454VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17456TE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17457PQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17465GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17469LW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17480GI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17482JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17488LP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17497PZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G17500FP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17527HL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17555JC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17638JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17649JJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17667YX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17673XH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17700LK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G17709UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17733ZN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17734NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17740TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17743FY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17752YB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17758YV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17765UK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17766ES", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17766PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17766YF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G17782WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17810KS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17823PT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G17827ZK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G17833GN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17843DM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G17856AF", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G17862JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17866PG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G17908GP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G17931ZZ", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G17940HM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G17981IH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G17991JB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18057CS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18067AF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18072NQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18078JT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18090HL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18098OS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18117YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18120TS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18123MJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18132YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18135ML", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18142CV", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G18143YW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18149MR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18155IE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18174LR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18201QM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18214MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18220BL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18299YA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18315KI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18335TO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G18347PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18362VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18372EE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18388QV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18405WX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18407SY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18423OV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18427DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18431SG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18463FK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18472TI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18516CD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18519LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18559LN", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G18559VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18561AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18564GN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18567LJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18572VB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18574CV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18583IP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18593SQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18603OH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18603ZQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18628GH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G18636LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18643HE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18653BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18695QD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18702SB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18707MU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18717LR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18734SR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18755YY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18800AB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18814OJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18815VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18833GC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18837FE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18837VD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18841NY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18853HA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18855WX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G18871OL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18878GS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G18878PL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18890KW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18892PE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G18904HJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18909BQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G18924BG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18930SC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18932FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18946TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18950NM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18953GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18963DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G18969NW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18975PJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G18980PD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G18982QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19002DQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19011KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19029ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19032WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19043KB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19075LN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19114BA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19121KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19122BQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19135OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19173OJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19202DD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19203SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G19212IL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19231UV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G19238ZQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19243BC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19251MX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19283CF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19298NU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19302IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19316VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19335EO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G19342EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19364EV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19369OY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19382GM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19393PU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19425JC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G19454WY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19474IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19535JH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19555CW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19562CL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19596BS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19617WB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G19618VN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19647KE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G19656TZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G19664QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19722GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19749DC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19752OX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19756XC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19793PI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19793TF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19806ZW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G19807BK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G19807JC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19813SH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19832RH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19910JZ", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G19913KF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G19933AN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G19934JL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G19954YX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G19957ZD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20016GC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20038KA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20043VW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20059NZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20061RO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20064ZN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20151DP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20164HH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20165PS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20169US", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20176YB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20210OT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20222KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20242KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20244DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20246IY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20251UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20254HG", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G20264TJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20269BE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20278CQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G20308RQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20310DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20359JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20362YW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20371UX", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G20372QO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20386DV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G20392AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20398NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20435PF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20438JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20440GC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20453WS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20482JP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20516BM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G20523OQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20528MB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20538OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20557GR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20557NB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G20566UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20574XF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G20575PK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20658IM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G20672RS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G20697RD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20709RI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20713UI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20718YD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20731UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20735IM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20739VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20745AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20752RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20826OM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20828MB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20835CN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20854YP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20857JS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G20860NB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20867OR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20873CU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G20878US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20879UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20884GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20884IJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G20887HP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G20890FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20924FZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G20928FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20955DU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G20966PQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20967CU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G20988ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G20993TP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21016US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21029LJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21030ZK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21077LY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21089WK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21100PW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G21108AJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G21130YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21147BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21200QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21202EE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21213KS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21217SF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21227CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21246WW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G21269QM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21287OF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G21294PY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G21297DP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21312EA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G21320TR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21324NP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G21360BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21373SZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21384RO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21385AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21412CQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21426LZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21438WG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G21468AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21472XU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21498YW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21506SF", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G21507RO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21516LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21534CA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21535UF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21557NG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21564HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21573GX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21581BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21586NB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21635DC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21654MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21672LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21675EO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21678AK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21679QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21696DT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21699NQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G21702CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21728DQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21740EF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21755QG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21780GG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21807KQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21808OQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G21827YQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21845NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21852WJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21859TY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21877OB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21880FP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21884JK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21895BD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21900DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21905ZO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21922VA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21928TI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G21931BX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G21939VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21939WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21981BW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G21989SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G21998NE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22012EW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22058OT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G22070LE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22074CA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22104MB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G22134AH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G22142BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22166AH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22171KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22174MI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22185MF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G22191PL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G22219ZC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22222BH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G22233KL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22260HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22261TH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22302YD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G22308XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22316RA", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G22327AZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22343QB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22348XO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22366MN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22385OT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22411LD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G22412KQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22420ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22447YO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G22469CF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G22473CK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22487KJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G22491WZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G22498IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22516UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22525ER", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22529GT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22535AU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G22536LR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G22536RS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G22540KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22555FB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22564NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22587IH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22594FG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22609VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22611UR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22626SX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22629JM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22668GN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22682SO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22701RO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22733YM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G22745SA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22751CL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22773YW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22782LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22787WJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22793FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22803YZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G22815DC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22827ZB", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G22841DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22843ZN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G22849VW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22852AR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G22852XR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G22903MQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22912HN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G22926UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22970UG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22976NF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G22986SW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22988HQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G22995SW", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G23006CO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23016AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23021IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23021NE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23032DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23048PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23056FZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23061NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23066SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23068ZB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23081CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23082UF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23113ER", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23119MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23121SR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23126IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23152JE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23152RS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23193CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23202WP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23229LN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G23236BR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23243LM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G23250OE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23252EB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23262BU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23262LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23263FP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23280NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23285KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23314QX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23334BB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23348CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23349FM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G23351CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23355WV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23368XB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23375IV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23392LW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23404PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23416ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23419VW", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G23425OX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23438NR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23442ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23447MZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23463KX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23466CZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23490ZP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23491CM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23494UZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23501RV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23502AY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23532MP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23532XZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G23560WQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G23564VW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23573FE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G23580VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23581EK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23624JT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G23633EE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23649LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23652VU", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G23654OQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23665FB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23674BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23761KD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23801QI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23828KW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G23854HB", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G23855LE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23866EW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23870PO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23888EZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23893ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23909XW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G23939XO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G23975EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23979XZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G23990GP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G23996QQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G23999MD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24021AH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24030QV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24048XD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24054AZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24055UV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24067PC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24080TH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24096JA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24108KP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24114NP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24115PD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G24120OI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24120VK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24123DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24137GH", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G24142JB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24146VR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24151NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24156WO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24168XN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24169HD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24186OV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24204KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24218RK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24218XI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24233PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24256XU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24275MB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24283IO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24293BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24296ZA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24296ZX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24303LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24312RF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24315QB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G24323NF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24326HG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24327KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24363HJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24366RG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24371IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24371QT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24375OF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24387TQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24399RI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G24407ZG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24421WF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24430RJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24434ZO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24443AK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24475OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24495XJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24497GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24508MA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24515SH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24516WB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24524DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24525ZJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24547WU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24548HS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24553WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24568RE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24569EC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24629LF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24646NC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24646WV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24649MY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24650WZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24684JT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24713JA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24720OO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24739SA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24756UB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24768CX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24790YU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24794ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24798BT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24820LP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24830XZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G24845EE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G24856YP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24859RN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24862OS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24882EK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24898NZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24912KZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G24916OP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24931MM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24941BY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G24946XU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G24951IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G24970IL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G24992BU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25006JM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25012OX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G25023LZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25024JR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25025GX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25032EA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25032PK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G25040JY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25043OJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25044JE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25061TS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25064SU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25065CJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25111WL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25127JU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25133LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25146DY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25152WV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25153GE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25157GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25213RP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25218ZC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25233TU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25244IK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25273PY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25299GA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25322NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25323VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25338OL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25340RJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25351JT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25353NN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25369DU", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G25369QF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25380IT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25382JX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25382RS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25387FN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25413GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25416CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25417NG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25421NH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25426PD", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G25436EB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25439DD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25443TD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25446AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25459WN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25489WW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25498HI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25499LZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25524RD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25529RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25538MM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25541GW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25559NI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25571LJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25599RT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25612EW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25626YS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25650TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25694MT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25705WX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25709GM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25716MV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25726HS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25733QB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25738BH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25757VH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25757VY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25764DO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25766ID", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25776XU", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G25778VW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G25780HH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25795DA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25804XU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25812XU", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G25830YW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25835YC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25844GR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25845BH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G25848FU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25865TC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25869EQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25870FA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G25895SL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25934VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25935VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25937FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25953KD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G25955UH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G25967GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25977RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G25985EA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26020AK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G26021BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26030RR", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G26035PF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G26054ZB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26091TF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G26099QT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26121MN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26176JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26185YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26209TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26224UH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26228QQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26229QI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26241YH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26250DB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26289WH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26301NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26325AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26326PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26332EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26341AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26341TZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26358SO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26387NM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G26392IX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26427QF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26429CZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26438GB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26441FH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26450SH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26452XA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G26472EX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26474AZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G26493RP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26497EU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26519FA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26534SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26570RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26575AQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26592TP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26596ON", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26629OM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G26642RP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26651YZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26667EO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26688CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26690QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26700PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26702BZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26712CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26718PT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G26724PP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26725PG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26725WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26754XS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26777KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26778RK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26793BW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G26805JF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G26806EA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26816AP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26827ST", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26833PD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26854HB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G26885DO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G26889NS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26913JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26918XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26930UQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G26943DV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G26981KT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G26985QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G26989YB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27000YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27025MB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27030ZC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27063LN", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G27071PO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27092AU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27124TL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27126VE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G27167IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27192WV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27209GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27210II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27236KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27248RA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27253PU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27263EA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27297CO", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G27300OX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G27304BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27304YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27326AW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27345TX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G27366LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27384IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27400ON", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27409LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27428XM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G27431EQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G27439WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27440CC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G27447FZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27457VN", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G27469DP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G27499KV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27513XS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27520PV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27523II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27526NG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G27526RV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27562JG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27562KD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G27575YP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27602SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27603XJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27605DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27624KL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27626TX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27642RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27655DO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27669KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27721RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27724VO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27726WH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G27730BR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27796IG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27817KG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G27854NJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G27854QS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27863LS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G27864IF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G27866VO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27868TR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G27883TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27888XB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27889FI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G27890BG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27893KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27911BB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G27920WV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G27930EM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G27966RX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G27967WE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G28010TC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28023AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28040SC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28077AI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28083XW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28085OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28116PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28132XE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28134WJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28136FA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28163VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28175OY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28198FM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G28200CZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G28200IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28218FO", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G28218FT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28225EV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28226YW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28302VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28316UU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28326EU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28329XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28336JR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G28336ME", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28337WM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28367EQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28371PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28378DY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28378XH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G28384MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28406IL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28430RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28439XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28465GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28481VT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28505XN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G28525CY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28546UC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28561QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28570DO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28582VX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28589RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28598IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28599FB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G28616IZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28628LQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28640UD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G28649NI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28665FP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28691NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28694FA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28725VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28731PH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28743EB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28745PN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G28749YQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28750LN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G28754WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28755KN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28756KZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G28757BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28765YW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28782ND", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28791JD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28801XY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28806OD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G28856KD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G28867TB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28873AQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28877HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28878FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28881KN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28885XK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G28886HO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G28890YF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G28895HZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G28898NZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G28915JJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28960YA", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G28975MI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G28989XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29014XV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29025YS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29031ZI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29046MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29081QO", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G29097OR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29098XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29112PJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29144HY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29166US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29181KK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29214BB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29231AT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29237TW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29260RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29276PB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29290QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29301RL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29323AG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G29326OK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29348FH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29386CS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29388XG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G29393FW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G29394YZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G29404FC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29415QN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29418HB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29432PD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G29434SO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29460QV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G29470VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29477YV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29489PN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29495CE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29503CE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29524AT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29539ZA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29546CR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29549OQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29578WS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29587NV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G29622NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29624ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29628MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29636OK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G29644TC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29667VM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29712MR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29725MK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29729DB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29739GM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29740WT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29774PP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G29815AP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G29818FJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29849JL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29853JE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29860KW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29867AK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G29879FQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29908ZA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G29914BX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29914GR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G29921YQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G29929KQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29940LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29956GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29970QU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G29971IY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G29988CY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G29988NK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30011VO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30086CM", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G30087HU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G30089VH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30090IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30110UW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30119VI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G30120XC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30147IW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30182VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30211JD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30214PS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G30232EU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30235YK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G30241UB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30255XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30260NQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30284BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30285AP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30296PK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30304DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30304IT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30356CR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30356XK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G30365BX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30367FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30367NE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30372CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30372RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30391YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30392XP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30399ZO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G30425ZJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30431XW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30434OH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30434QC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30443NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30464XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30524AR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30524IG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G30567BL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30584YH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30586VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30590EC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30591GE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30609WQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30614QN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30621FH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30623NS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30640LU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30647NK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30651QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30656BO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G30657WR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30673NA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30697FM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G30710NE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G30736BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30739AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30743FK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30753DF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G30774VI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G30774XC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30783DZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G30832XJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30835JV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30853JB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G30871VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30872GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30897RJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G30908XZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G30926OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30933VG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G30976UY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31008GE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G31061SB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31073HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31087MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31101EW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31118TG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31155FD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31161GA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G31162WU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G31194II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31208LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31218QF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31234AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31248ZH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31254YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31259RV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G31282SD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31288FK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31317BJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G31317XB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31335UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31345CV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31372TK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31378RD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31422IN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31457ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31489QJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G31493NN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31540HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31552VX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31563MH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31565JD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G31572EB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G31586XE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31601FB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31613VR", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G31654CJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31671UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31672UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31676DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31686QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31721SH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31729QS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31732RG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31745GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31767KB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G31776ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31835NQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31846AZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G31849TV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31858VW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31881UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31884XL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G31894FR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G31909BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31910FR", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G31911LU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G31941YJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31948FR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31966IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31975LN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G31982GY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G31997DH", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G32005GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32021YB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32026LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32027JZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32053XC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32057WN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32063IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32077KC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G32104HQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G32107QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32112SX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G32160JT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32167RW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32216IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32218WF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32222SO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G32253LY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32289FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32306OG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G32306SB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G32314DS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32319LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32333NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32361GT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32367NO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32371YQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32383ZG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32397EL", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G32405GG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32417DU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32418EP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G32426JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32446BD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32460TA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G32485KG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32510SF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G32530PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32541GR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32546KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32546UR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32554UC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G32556JI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32588AA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32590UP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32604OZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G32625IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32652KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32660EU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32660GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32675WL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G32684NS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32698TB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32720EK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G32722PR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G32723SL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32735YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32748CU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32785BQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G32818XV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32826HK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32830IJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G32853SP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32863IR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32877EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32885BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32908YA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32910OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32944VN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G32948PW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G32953MP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G32968SR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G32989SG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G32998WQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33012HL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33018IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33024FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33044HF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33064PF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33068BF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33079AA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33094KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33101CG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33115WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33135OH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33149BM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G33159AG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33195EC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G33236UO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33278DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33286MK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33287EY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33287GK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G33294DV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33318DG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33334QS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33337PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33345BX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33350QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33350UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33364OS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33368AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33377US", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33394ZN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33401IN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33403VX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33418YX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33433YV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G33443TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33463NC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33469TY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G33479HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33508VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33569OU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33593EQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33610ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33627YQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G33630GM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G33633KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33637CY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33652MJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33658KS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33669VL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33696UB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33711LE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33718UW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33719VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33740YL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33746QF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G33758XE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33772BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33825CM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33840DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33841YH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G33858ZT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33860PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33866SM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G33877TL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G33886DT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33892UJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33899KJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G33908QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33911NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33961NR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G33963JX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G33964KE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34041VO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34049BA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34068FA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34073UX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G34096TA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34100DU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34115KM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34118NA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G34123VN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34143CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34151GY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34154HL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34162ZB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34163NN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34168KI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34180FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34208UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34219XL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34229EO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G34256VM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34258QU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34263TP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34293SQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34298UZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34311QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34336BJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34339XM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34372NB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34384TY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G34398FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34449IE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34461YU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34466UT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34479QF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34487MQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34539VP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34592BE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34596BP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34602IJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G34609SH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34624WH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G34632KL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G34641KA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34705QH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34706DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34721BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34740CD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34751ZZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34764BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34774HI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G34789KG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34797CS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34801BK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34807KI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34814JC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34824ZD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34854XJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34863TS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G34865TP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G34877SN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34879YH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G34891MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34893KL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G34918NO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34938CC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G34962LY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34962OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34985TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G34988TR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35033MX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35037PU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G35039IM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35040PZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35064LN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35106OM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G35110VT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35116PX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G35124IV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35127KF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35127VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35129PK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35179MW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G35186LB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G35199BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35212EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35214MM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G35225VE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G35234CM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35238UK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35241BR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35243PQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35252ME", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35252UG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35255WG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35301YI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35312VR", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G35316IV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35319OJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G35326EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35338HV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35343OD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35347WX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G35369GY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35373KW", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G35409EZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G35409SK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35419IZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35432EX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35432MX", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G35437KG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35438RA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G35451HW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35481RN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G35486FC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35528EA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35539BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35551AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35580MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35583GT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35609TJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G35617MS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35632SP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35644NQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35656YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35679QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35684CI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35689CT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G35701MX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35708SF", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G35718GY", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G35745YL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35749JN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35750SU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35761ND", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35778AN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35799DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35804ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35805TC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35815ZB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35825BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35842UG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35855PE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G35866KN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35875IX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35884UD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35886GU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35891AU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35896AC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35898DT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35900GR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G35910XN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G35916JD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35932XK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G35941VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35945JK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G35946GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35947YD", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G35949CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35955MV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G35977FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36008WY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G36038OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36039YA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36046VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36047BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36094GH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36112QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36123IU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36124QZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G36134SL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36138ZV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36157LL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36169RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36171FU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36175JD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G36184OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36185XU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36191EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36226TU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G36231CI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36240AB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G36253YP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36258NK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36288QF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36341SC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G36359GN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36381SH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36382RP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36404TW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36406GU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36410KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36410YZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36416LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36443XA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36460HY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36460YS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36479RD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36480VP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36482YM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36494BB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36498HE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36502OW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36511AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36534NK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36573BV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36588NK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36597IG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36632JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36669SS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36672CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36674QY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36682FJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36721CL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G36761DZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36765BN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36774NW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36777IJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36786TD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36793ZF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36807NH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G36813TJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G36835IG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36839GD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G36855EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36856ZX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G36878RU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G36935SP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36956RR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G36958OJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36970ZN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G36983SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37003XY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37004VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37021DD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G37043BS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37077FO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G37093SO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37097TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37115PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37134CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37134TK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37137WW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37163SS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37175JP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G37185HI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G37190OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37193ED", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37203ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37222EI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37223NW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G37231JH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37239FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37241GG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37282LW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37283DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37297IE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37325HA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37353HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37354FL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37356AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37369MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37381UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37382BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37416IO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G37416IR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37435GT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37510PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37528JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37530LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37584UP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37589WD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37597VQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37619KE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G37638KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37649DI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37653KL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37663EI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G37689ZA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G37716XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37717BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37723AL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G37732RA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37748PE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G37779JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37801HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37843CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37844TL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37854OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37861OJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37877OJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G37885HZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37891WT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G37927WZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G37983HD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G37983TD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G37987JW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38002BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38004LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38027UF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38065TJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38075PP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G38078TR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G38079LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38100PH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38120GJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38152SQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38177ZC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38189CI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38195IZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G38207GT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G38215XX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G38229RW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G38234JH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38245IP", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G38279WF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38296RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38301SX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38309TB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38312ZB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38315QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38316MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38322NO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38332TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38335CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38351JR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38351MF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38361SH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38402DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38418FR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38421BP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38437KG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38450KX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38451WG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38452NY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38462TG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38465NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38466KL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38468XG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38478IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38483QL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38506CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38542FY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38542SD", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G38568EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38581WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38584AL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38588AL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38603QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38616ID", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G38644TH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38648NC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38648SD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G38655XV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38684VZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38688TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38691VX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38702PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38722VX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38754AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38767OS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G38773BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38783ZJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38785NI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38795WJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38799GI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38802WX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G38812YS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38823IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38859XU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38861VL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38877IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38880ZX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G38887OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38887TM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38933BS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G38933FG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38960NX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G38975ZC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G38979WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39011RO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G39011WZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G39037TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39053QM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39098FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39100MY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39113GN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39115ZT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39120NF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G39130DL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39135DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39136MQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39147LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39155BY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39162CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39174FJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G39189IR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39192YG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39205FI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G39218TG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39246KD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39247UK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39258JD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39260NC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39279TA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39283IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39305NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39308RS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39321UZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39326PP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39335JJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39335NM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39369QQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39370BY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39393JJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G39403FE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39407UA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39417RW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G39422JF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G39423SD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39428SE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39490MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39496AZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39516UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39520FS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39523KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39535TC", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G39541XZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39558MO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G39567YM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39611QP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G39615UL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39624YQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39632AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39643KO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39650IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39660LT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39676NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39713SV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39720OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39738WL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39742GX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G39753BR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39759RL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39762RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39785OI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39802SS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39815IU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G39838HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39865FQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39882MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39890DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39893XZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G39916NT", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G39924QQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39927BK", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G39929JI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39948NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G39952OA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G39976AK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40019JN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G40026ZO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40047QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40061GI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40069TO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G40088CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40107NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40119MV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40159OF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40185ZR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40188OO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40193LX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40228ND", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40269CS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G40270LS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40276YL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40289VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40291QP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40294ED", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40319SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40331VO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40338WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40347YM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40381AZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G40393FZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40394CJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40397HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40413JC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40445LE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40455IF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40463SB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40468XE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G40539YV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40560AU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40560HO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40560KZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40565CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40573EA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40580KO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40583AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40589UV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G40592RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40599KA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G40606LI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40609PW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G40610OP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G40626GU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40652SR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40660XA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40676QN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G40681EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40689UV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40706KD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G40709XS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40714SE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40724HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40737YL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40748QJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G40750ZZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40757HO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40762DZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G40765JD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40778MP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G40778XV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40792HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40799GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40813RE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G40825DC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G40834NS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40838GB", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G40841KI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G40852TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40871OK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G40885WH", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G40907PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40909HG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G40930TX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G40957MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40963HH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G40976PU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G40979HK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G40995JK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41008BQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G41021NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41037IT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41063BN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G41068YK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G41079HW", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G41095YZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41165OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41165PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41168HB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41196CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41203GX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41205RC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G41220ZV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41227XH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G41227ZE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G41232YR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G41245OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41247ME", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41255BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41257VM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41286JH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41321IO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41322DV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41324RH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41330YY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41332SM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41358UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41372SJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G41378OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41380ZD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G41384PQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41387TK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41403QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41424HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41429NP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41430WQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G41434QN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41444DX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41445CB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G41451JJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41498BE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41539MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41540NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41541BW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G41545LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41552DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41552FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41570ZB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41575BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41581KJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41606JQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41662PV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41666CG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G41732ZR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41780OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41797KJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41816PJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41834QV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41835FB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41836YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41866GK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41896LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G41919TD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G41925MG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G41928NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41943FT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41964LZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G41991IF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42002WQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42008DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42028WD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G42039AA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42051BB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42062OV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G42065BH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42089IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42094MI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G42105TS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42114VS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42115GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42120JR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42138LH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G42147XQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42154JB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42197WD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42206TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42233WE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G42239FO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42239OO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42245KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42256QJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G42263HE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42283HC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G42295OK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G42300CL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42325VD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42332XP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42366QH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42368XT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42373AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42388XF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42393CS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42398CG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42404DZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G42407QV", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G42420CF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42426KZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G42434UV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42444RF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42448AG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42448YD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42468DL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42473FG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G42475DY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42519AN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G42531AE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G42537PG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G42545LJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42603IF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G42603RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42611JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42622BJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42632OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42650PV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42658PX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G42658SU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42665KV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42667BL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42668PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42669SS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G42714XD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42750RV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42752PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42762AJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G42772WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42791PH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42797SX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42806LZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42806RX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G42814RP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42818YG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G42828SU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42829MO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42829WM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42832EX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42883ON", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42889MJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G42908EG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G42912TT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G42927HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42929BO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G42958BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G42993UG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43001RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43025II", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43027VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43039PK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43059DJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G43059PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43079BH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43123WA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G43133YJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G43145UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43146HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43167FQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43187MV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G43204BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43211ZC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43220WQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43221GX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43232UV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43247AT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43265YA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43297AH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G43315LE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G43321OQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G43326BY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43415UJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43417CQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G43426MU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43438SM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43438TM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G43449ON", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43453MN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43455UG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G43482PE", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G43484TW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43506AH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43514NA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43558QZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G43572AH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43585PF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43592AC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43592PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43593XZ", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G43619YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43629KF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43636EV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43639BV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43656YN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43662XM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43668RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43699PR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43699RJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G43728SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43744JB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43744LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43766HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43808WE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G43825VM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G43828ZO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43840GU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43875XT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G43925AD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43933MN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43946PN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G43972TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43980GX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G43993DD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44037MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44058FL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44088BX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G44094CZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44127LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44131LQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44139DZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44139ZU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44144AA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44159MM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44177HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44194HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44198VS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44199IU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44204WT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G44212UE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44233ST", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44236OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44244JM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44254HO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G44302QI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G44342ZF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44374JT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44397RK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44407SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44409MI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44411RJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44414IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44419OK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G44463UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44495BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44502UE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G44504WW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44507OO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44516PQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44543KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44551BR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44579CT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G44597NW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44639QZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44642MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44686VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44692LQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G44711FK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44742BQ", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G44772RK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44809JX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G44817MT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44827DP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G44828HC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G44831CA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44848OP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44880NI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44886WZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44890AJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G44900DK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G44907FO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G44917UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G44948DV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G44980KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45002XX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45003LE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45007TW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G45047PE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45086UC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45089UO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45095CF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45111VK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45118AI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45120SG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45129XM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45145KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45157JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45219EG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45235OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45242NO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45289MV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45291XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45304AE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45304XA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45313PF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45320WQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G45331AO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45333LE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45333UL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45335XP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45362KT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45367LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45388GV", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G45388VA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45402WV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45403OQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G45426EB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45431CR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G45465HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45471LL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45494FB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45516HW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45516VR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45518GL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G45548XA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45563MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45563VS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45565NV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45577BZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45579IH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45583YB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45592JO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45592PF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45596OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G45604PU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45637XA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45677CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45685UE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45690OD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45699QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45705HF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45707SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45709SU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45718WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45723ON", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45752UQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45756EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45763XX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45767XH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45819SH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G45827ZM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45828OZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45837PC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G45849QU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G45859FD", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G45892JC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G45911EQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45917UD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G45939NL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G45941OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46014PJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G46015GT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46016EN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G46026IB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46029TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46039GY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46043RA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46053AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46060BG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46088YW", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G46108TZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46135RN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G46144MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46168RR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46174KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46183VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46187ER", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46206TA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G46222DM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46241WB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46252BF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46295MJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46304CE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46305ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46309DU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46320BA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46340EI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46341RW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46360PG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G46366OF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G46382BV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46420ZV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46439VB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46462MG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46500XL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46501AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46503UI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46520QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46525FF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G46532VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46609ZR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46622AK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46627WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46643OR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46681XX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46686VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46711IU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G46711XU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46743AZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46748BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46754UT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46758LT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46760LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46772BG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46785SS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46790QW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46817ET", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46822ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46823CW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G46866BD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G46868TY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46887YC", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G46890BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46915JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46917EP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46926OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46935AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46960TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G46974QL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G46979RJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G46996ZC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47058RI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47064OG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47116HX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G47152AG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47159JT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47174QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47179FY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G47180UC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47190LU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47191GR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47201SK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G47262KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47307MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47318KU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G47320HQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47325XO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47330ZJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47331LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47345EV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47357GP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47357TH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47359DC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47360UL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G47370LX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47391NN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47393ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47439SP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G47451TR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47452EQ", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G47459CP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47466SD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47483HJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47486YB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47489ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47519RD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47520QY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G47522FK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47537XW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47538PA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47541JN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47549XD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47552PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47557KS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G47560LW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47573PO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47589JT", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G47590GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47595SE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47652ZE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47669CK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47689UY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47690ND", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47701VN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G47709SA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47772RH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47818EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47847UW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G47867DI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47868BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47902AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47902TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47904CW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47921ZO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G47925PB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G47935HW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47947JW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G47952MI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G47967NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47975LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G47999PB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48010LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48056PC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G48064BJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G48081MJ", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G48082DW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G48087XR", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G48088DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48089FK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48089QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48092WH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G48115DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48126ES", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G48129FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48192XR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G48205UH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48208OJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48235SJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48251XT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48256FI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48265KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48265YT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48315PB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48321FJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48330EV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G48355MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48365EK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48367IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48367ZH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48375OF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48440GN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G48465YI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G48472LJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48474NX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48488SV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G48499NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48503ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48525ST", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48533PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48555NH", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G48558NN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48585WR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48615MM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48638TB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G48676QC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48678VC", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G48714QU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48728KD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48758KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48759RG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48768LT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48768RT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48785BB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48789OD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48791KW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48809BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48809VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48818KL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48822HK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48823WJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48840GY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48850WY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48851YP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G48854JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48884SG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48887AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48905NO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48916GD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48938DX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G48941WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G48949LD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48949QP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G48972NU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G48980VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49007JT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49015YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49029NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49045KA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49077EU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49088AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49104WF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49120XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49128NT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49194KA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49197SK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49200LA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49200MO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G49221CG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49228QV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49233FW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49277CJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49292FH", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G49302PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49313FU", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G49322HB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49327HI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49332RT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49349BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49370IN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49390AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49394FL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49398PG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49416SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49418IP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49426SU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49437KN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49452BL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49460YF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49464XD", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G49465QD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49473DH", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G49485GD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49489TR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49499OL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49499SW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49502SC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49508KM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49520ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49527BY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49529DV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49542DJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49555AQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49567XA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49575MY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49582PC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49584VF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49603LL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49604IR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49609ON", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49622ZO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G49632WD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G49642CM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49668VU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49671FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49685NJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G49721KD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49740JK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G49741NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49742PU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49743FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49747JY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49757FF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G49763BM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G49773DF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49794AK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G49844LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49854OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G49915EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49936EV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G49936GP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G49944DR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50001GD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50001WA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G50003EV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50003FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50010ZG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G50043OB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50068TE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G50071OA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50076EU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50077VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50117DJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50136MD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50165MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50178BS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50183RQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G50192TG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G50198YU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50215WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50223FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50241DS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50252SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50254UQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50303VE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50339FG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50355CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50362JF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50370PE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50390GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50425IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50432RB", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G50471DC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50482KM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50501KF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50513EC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50537DF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50558NC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G50562TV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50570JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50570OR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50574FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50587UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50598PQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G50613GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50615HW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50617EZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50619VO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G50631BD", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G50652EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50683ZR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50685MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50690RS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50692JY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G50705JT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G50708YO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G50709IS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50755IT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50762OP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50769VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50802FP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G50805QB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50808YS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50809LR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50824HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50844LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50849OF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50849VH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50896EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50903CR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G50905UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50931GW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50937OW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50970GU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G50977JR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G50999TP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51005JI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51015NS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G51018LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51020FB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51057EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51071LC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51071WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51080VE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51091HB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51099WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51100CM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51103QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51114IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51116JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51127XF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51131QP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51140AE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51157XM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51162XR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51176VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51184PT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G51192NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51216AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51234MH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G51247FZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51316WJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51318YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51340HW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51343UJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51349BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51357YX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G51376IN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51394GL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51445EM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G51472NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51473GI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51500KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51502JK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51509AZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51554PH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51557QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51566FN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51586EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51588OR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G51633YN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G51636DE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G51665JN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G51678TA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51707UA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51709UX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51713OS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G51722JR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51726CK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51747SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51751TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51774AT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51809HE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51809TM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51840MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51842SQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51862BI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G51877RK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G51879PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51881PG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G51883EC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51891WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G51911LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51911XK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G51914CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51914HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51931HC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G51947OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51957KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51963NX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G51984GX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G51992CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G51993UG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G51994JG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52030AX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52051HO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G52070NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52071EY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52106VD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52120GQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52120NK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52132CU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G52138BR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52144RR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52154FO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52173KV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52179YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52188XE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52217QW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52227EX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52232VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52236QQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52236XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52239LM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G52244NI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52262VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52273YQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52308HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52311ZH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52316LQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52318OF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52361CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52376IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52380IS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52380RJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G52447UD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52457VS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52460PC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52471BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52488RZ", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G52512BG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52515QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52558KX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52578IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52604VL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52608IK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52608KW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52629RQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52631BA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G52639VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52652AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52674BA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52706RS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52732EM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52738OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52759XA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52764DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52794ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52814NP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52839BU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52887ZR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G52902AR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G52916PO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52919XH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52937XP", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G52953EP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G52960IE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G52971BE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G52971SZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G52972TJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G53000BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53016WG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53023PP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G53031QB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53034PL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53063UV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G53064IK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53066XA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G53084MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53084TQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53085VE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53151WW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53176VA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53180NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53188WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53206FD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53208AY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53219BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53220ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53225BR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53246IE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53251NX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53266MQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53297ZN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53303ZX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53319DU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G53330OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53362BF", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G53368RM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G53385YP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53396TS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53404LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53407VB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53421UG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G53426PR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53435KM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53440PM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G53472RQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53490OS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53497KU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53498KG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53502ZZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53510YN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53520QY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G53522BA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G53527TY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53529RC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53535QW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G53542OI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53549QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53557CQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G53568QG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53639VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53665QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53682MP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53707KJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53722CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53726DG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G53733IF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G53737KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53749RD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G53778MF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53809VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53810EV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53822JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53827VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53834TX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G53836TU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G53846NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53856PB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53861OY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53864RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53869ZZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53878DC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G53880XP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G53909CK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G53917YN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53922OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G53931RD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53933PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G53944BV", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G53960NM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G53979EX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54029EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54043EU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54047WG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54060QF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54082VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54083SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54094BQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54095CK", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G54095RB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54121EO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54125VH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54134KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54159GO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54163UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54165VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54190AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54199ZM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54212AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54228HN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54250UE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54264AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54273JA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54286RT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54305YK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54316BP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54334WY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54335XN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54351IR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54362RR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54370PI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54371SF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54392HP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54394ER", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54402EC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54409FD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54410JV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54425VX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54426UX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54434IR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54439SD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54451EW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54458VQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54461SS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54462MO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54496CV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54499HR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54500KX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54513GY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54536OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54542VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54555CN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54557YU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54561II", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G54567NU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54572EC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54578OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54580AN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54624RV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54643MT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54650UF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54651DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54706BB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54727BI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54741SP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54745KD", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G54760IB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54768QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54795GY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54802EG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54831HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54847BG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54847JH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G54860YW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54870QZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G54887WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54890PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54896JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54925RP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54938LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54945BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G54951YG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54951ZT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G54953IZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G54968VQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54970OI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G54971WD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G54994IG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G55006MX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55019GV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55025YG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55026LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55037II", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55043JL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55051BJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55055JS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55091DF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G55102GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55104BW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G55114PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55126WZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55135NQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55144QZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G55146EO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55152EE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55174HS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55177GW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55180PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55192YV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G55205VX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55223IP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55252QQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55259BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55282VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55299ME", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G55331YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55340IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55353EY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55368WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55398ID", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55402MT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55407TJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55459AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55459MJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55464VJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55480NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55487QV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55492KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55494GF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G55507CF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55514LR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55529NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55550BB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G55559HZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G55560NP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55567ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55578JG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G55592QU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55636WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55638XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55664FE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55675FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55695AY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55700PF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55728EM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55753QM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G55777FJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55823NJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G55838UV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55866KK", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G55870EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55880FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55925AY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G55925JJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G55964YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55967EP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55975RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55975YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G55986UN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56011JM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56033WP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56042JM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56044AQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56067ON", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56077PT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56111FM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56186MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56194FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56200PW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56202KK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56221OY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56245IE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56248SW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56256KD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G56267PD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56270HP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G56276UW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56285KF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56292BI", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G56293JI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56295OD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G56296MY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56299XO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56315MK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G56346ZN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G56404GH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56418NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56427WT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56480ZT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G56485ZR", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G56489QW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56493QM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G56498UL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56502CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56506GT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56517QL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G56529CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G56556KH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G56575BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56657VE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56675EV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G56676XV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G56682BC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56697EK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56699NM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56731XW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56734EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56767LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56796RC", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G56803IJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56829ZH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G56831HO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56852MM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G56878YW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56882GN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56913CG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56920BC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G56936OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56946CM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56947WF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G56961QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56973FQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G56979BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G56987FT", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G57007FO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57030TI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57046HW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57051HS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57051UJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57061PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57063AY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G57068ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57073DH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G57092PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57120NC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57130DY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G57130XG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57144YM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57183BI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G57184TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57226OB", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G57247BR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G57249PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57253BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57262IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57276IQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57296XM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57313ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57321FI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57330MO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57335GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57340EZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G57385MA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57385TO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57387RD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57399TD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G57415BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57447MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57471CR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57482YT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57505PZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57510LQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57545VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57558XS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57568CV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57591KJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G57592QM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57598XN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G57610OS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G57672ST", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57692HM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57723XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57734UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57753FT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57755LH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G57772TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57777JG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57778QL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57803ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57808QW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G57832UA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G57836JM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57840ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57843CW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G57857CB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57872KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57925NK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57930HQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57938VY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G57940FP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G57949TL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57965EF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57971KJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57993RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G57998VW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58006UM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58028QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58061QH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58066JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58078TR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58106KY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58145JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58180BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58181OH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58195CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58201OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58240EV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58267EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58272ZE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58276QF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58293BE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58297AS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58314JG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G58325KK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58362DI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58368SN", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G58386YP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58402CL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58414HI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58450MK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58469ZS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58473ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58477IT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G58486ZT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58489WT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58489YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58501OI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58511VX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58537BJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58539KV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58543HQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58577QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58578BZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58580BP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58582XO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58590MR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58620PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58634ZB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58645HA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58660DS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58670TY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58683GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58695FX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58697JA", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G58699XL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58699ZC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58701XD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58740DK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58759ZL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58776MY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G58793GF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58806SQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58810QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58814JC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58814TJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58815WR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58825HG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58837QJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58846EV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58859HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58870KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58871OJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G58878NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58890ZT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G58952ZX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G58959YB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58972RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G58972ZH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G58980RJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G59031ZJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59035KA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59044CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59052WJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G59068XW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G59097RP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59103LK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59111AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59130AK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59133XT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59155GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59179MY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G59212FY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G59216UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59280CO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59287RT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G59306VK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59332RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59362TA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G59362UD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59379KN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59392WK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59417ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59432AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59479IL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59498PG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59505RO", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G59528VC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G59529EG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59544AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59548CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59576RD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G59587GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59588ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59595AB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G59635FY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G59644LY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59658KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59659CN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59674PZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59684RH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G59701TN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59712UJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59740UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59745LP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59746EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59747EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G59757WP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59804FF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59817AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59821JJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G59833AV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59853RL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59862RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59915RO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G59930AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59937NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59944EN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59951KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G59969VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59970QL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59973RN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G59999BN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60010FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60057HO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G60059YM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60066HN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60067UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60087UT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60090VO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G60127MT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60128FW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60138JZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G60149XJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G60190AL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60199VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60219RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60231EF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60234BX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60273TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60275BG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60282OI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60321GY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G60323NX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60324UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60341PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60361PU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60403CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60414ZR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G60425OM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60426XC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60437DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60441MD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G60457MA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60461BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60515CZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G60527GH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G60558WQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60564JX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G60567MY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60598XD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G60603HJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60615ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60625SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60626AG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60638AI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G60638WA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60673FL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G60687DB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60725IW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G60729FR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G60731ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60734PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60735SE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G60740GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60741OC", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G60755CL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G60759PA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G60799ZL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60833BB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G60844ZM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G60852ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60864NI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60883HN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G60884FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60890ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60895UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60912CW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G60920ZG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60925RS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G60949GI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G60955ML", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G60965JU", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G60977LC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61009EJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61011QL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61044YD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G61072JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61073CA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G61078TF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61081DV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G61089HL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61090QQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61094XY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G61108WE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61116DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61119KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61155XS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61159LY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61176JH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G61191HU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61238HB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61281CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61311ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61314HT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G61339UO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61341GD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61350QN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61358KS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61367OF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61392DS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G61406KC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61411XJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61424DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61426YN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61431OM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G61442IL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61459KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61486JC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61501FW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G61503ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61538CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61547RR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G61559VB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61582HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61588MG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61625UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61633GX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61672HK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G61715VD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G61724IO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61730RY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G61747RH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G61757FV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G61778ST", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G61780GR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61786HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61788PW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G61823QH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G61833XV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61886WA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G61887JK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G61887VA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61889LW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61906XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61918NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61921AV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61929YU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G61938MK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G61944AL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G61972DW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62001NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62002KG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G62007JK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G62007UG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G62014UA", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G62014YU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62015ZM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62044IM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62044ND", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62055DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62070TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62074KH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G62081IR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62086ZV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G62138GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62146JX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62149VQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62159SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62165LJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62182KD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G62189UN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62217NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62218ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62221RF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62243CB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62244TK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62252OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62274IX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62278MB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62311FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62355RX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62382LX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62384BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62400VU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62401LZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G62407IF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G62414VY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62418LM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G62437NU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G62440QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62449EO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62469XB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62471ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62531KN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62533XK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62549PS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62558LM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G62567KW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62568FD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G62574YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62577TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62613QD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62621XS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62632ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62642QZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G62680DG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62680UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62713BK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62741IO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62765JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62820PI", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G62824TL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62861MP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G62870QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62882LN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62904LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G62911EF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G62980KY", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G63020KP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63083UK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63110FE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63135DD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G63161GM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63188OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63193BW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63193FF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63194GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63209WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63213PP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63231BS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63241SG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63242HY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63251EV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63258OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63286MF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G63295GL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G63303QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63309YY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63317CA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63324SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63326CP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63327EC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63327FD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G63329SO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G63334FZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G63342TJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63343WQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63349JM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63361NH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63377SE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63383SE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63388IH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63404EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63405JW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63416WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63427CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63438BO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63438EB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63443GA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63444WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63452MH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63461XJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63468HF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63474NY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63499JS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63505HS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63519GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63525TE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63527PL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63550TC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63570GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63580II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63628UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63646FQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63660JP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63664GB", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G63690PS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63716UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63717SU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63727WO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63748AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63754TT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63787FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63791WF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63794QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63826DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63830GM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G63842WA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G63845LK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63858YS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G63930KA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63932ZM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G63946SF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G63952EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G63978FG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64002SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64008QI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64029DP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64050LH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64054WF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64055WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64061QG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64068RC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64102JR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64106XU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64111DY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64122IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64157NZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G64164CA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64165TJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64171LP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64200LI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64206XB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64239KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64241WX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64242OD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64252WT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64274SJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64285PF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64305XQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64354IV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64377MH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64404HO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64414BV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64450GG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64454AV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64458EC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64459DC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64463IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64468GG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64476AV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64482PB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64485VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64504HS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64527IJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64535ZF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64553RA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64560HC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64563CQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64566OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64575OQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64577HA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64581FT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64604UL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64610UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64613CO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64617OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64662EI", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G64684RR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64712UU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64774WV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64787HE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64813IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64839PV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64842RE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64844ET", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64849QZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64851ON", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64852XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64860QW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64878VD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64881OC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64899EB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G64904FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64904QS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64905PP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G64931FF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64937TE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64963GW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G64965PX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G64973KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G64981YW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G64996BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65012NY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65026YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65037OI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65070OM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G65076KP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65085NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65112YQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65124UZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65135MY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65137ZN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G65162CH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65169LC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65180FA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65191ST", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65200OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65224TC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65225VD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65234FH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65237AB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65249DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65253JD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65262KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65263TV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G65268SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65285QO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65288NK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65315WP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65321MY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65321RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65343GU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65345RD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G65347HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65348IZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65351EL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65363PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65364FS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65365ZJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65369IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65376QI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65396UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65400TP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G65408JY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65446KH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65447BW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65460ES", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65464AD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G65499ZI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65549NV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65562ZE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65579KI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65593FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65600KO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65602FX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65609NG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65660BL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65667PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65669BM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65704VY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65715DK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65728QH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65777NT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65790DQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65796IY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65796KU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65800DR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65805JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65808UZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65809MG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65815BT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65837AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65852GY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G65860PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65867LM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65890NG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G65895VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65909WP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G65933SR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G65955VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G65962JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G65967AW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G65978JH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66013IH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66021ZE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66030KY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66038TP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G66040GE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66040YD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66055IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66076QV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66123IE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66154CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66160FU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66162WI", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66166BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66169TD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G66184ZO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66188DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66191UP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66205CG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66213WH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66225EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66244VX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G66253BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66255YY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G66271TT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66283JW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66284CX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66289YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66301VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66307BZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66349AX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66360FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66367EU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66405LD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66414OW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66418NO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G66419SM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66421OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66435SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66460UY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66489LJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66505YL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66509EZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G66512FS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66524AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66544EE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G66545QN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66552NS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66576RC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66605YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66621SE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66632SG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G66646CU", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G66651WU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66654PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66662KA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66669IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66685LA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66685ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66699QG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66711OC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66722AJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66723JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66741QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66772SE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66788MF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66828DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66830UP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66838AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66858BS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66867PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66872WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66874OD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G66887YI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66888DD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66917BW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G66923LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66945SJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66959DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G66961JH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G66967KV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G66977DX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66991YE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G66995XV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G67019HT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67046QM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67053LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67061AB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67080ES", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67129FV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G67174VO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67195ED", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67200RM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G67208MP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67212WQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67251TG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G67251WU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G67255LY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67256DS", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G67263AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67265VZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67274NW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67277GK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67281LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67293HE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67300CR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67306YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67310PZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67326LW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67354ZM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67371HE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67384JS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67384KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67400MO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67405DY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67407NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67432KX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G67451GS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67466TY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67471ND", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67481WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67499HP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67534CW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67561OD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67571VW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67586UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67590LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67624GB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G67642QF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G67646YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67650WH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67682CC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67682MC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67686RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67693JC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67694IK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G67695RM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67697EV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67731YT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67772KL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G67775HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67776GW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G67779EA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G67796SA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67797LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67815NN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G67821CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67825LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67839YV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G67878YZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67883AD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67893HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67899GK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67902NS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67920QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67923GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67935MX", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G67949RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67959IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67966GD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G67969CT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G67980TZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G67984UO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67987DR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G67997AX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G67998OP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68007WG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68008QO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G68038KC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68043EE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68053UD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68062BK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68066IG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G68072QH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68074JL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68099MP", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G68107IH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68132LA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G68133RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68145BY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G68175FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68178AA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G68186HL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G68190BD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68200GL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G68207KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68210RO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68215ES", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68232HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68253RD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68264WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68268VH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68286QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68290RT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68306RK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68308SZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68310FJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68316FE", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G68338CE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G68373VW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68384KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68391RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68412PR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G68458SS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68480EG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68490DY", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G68523WA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G68529CM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G68529LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68541BJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G68550ZM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68563JG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68596UN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68614NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68636XD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68637SE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68639VP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68646SF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G68667ZV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68672OT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G68686HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68694JF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68707XN", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G68713BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68721DM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68733PD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68776NM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68792QL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G68806LA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68820TX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G68881YW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G68893BQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68893PY", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G68894XH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68897ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68905CW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68914XE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G68924IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68931EB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G68940KR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G68951DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68956JQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G68964XC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G68984AD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68986CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G68987LV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G68990TK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69003EQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69022KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69024AW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69025XA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69033GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69052CM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69065FL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69093SL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69096ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69099KE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69118GP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69126NO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69137GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69173KW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G69176ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69185XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69189FV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69204PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69228BH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G69229KW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69230QH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69233PF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G69261IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69281GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69288VJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69327YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69345JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69349ZZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69375AJ", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G69397VF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G69406YD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G69408ZZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G69420JU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69440CJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G69443HY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69445ZX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69446XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69453HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69476MK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69479TC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G69487NF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69500TM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69553SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69554ZK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69585DZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G69616MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69627IL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69631DE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69636EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G69683VZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69685RI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69689ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69715ZH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69723CB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69735UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69738KH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G69748HU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69748TK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69751PD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69762CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69762TP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69765IW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69774ND", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69788BR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G69808IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69822EU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G69824GC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69831AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69837XX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G69876CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69890SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G69897TU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G69969LR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70025ON", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70030ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70048IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70062NE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70074GW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70080NT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70081ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70097NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70122ZE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70125XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70146PH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70186NT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70224LN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70228DF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70288OC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G70323JV", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G70332AA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70347OW", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G70362WV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70386XL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G70421MD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G70422TG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70444FA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70479DP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G70494NA", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G70497TX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G70520NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70528XB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G70538OR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70539LS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70568SB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70572KM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70572KX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70579MZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70582LE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70587KR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70590VH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G70611DW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70620WD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70623QI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70631UV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70634FN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G70647PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70648DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70649KP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70651ES", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70656EA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G70658PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70688TC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70693FX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70697FM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G70751QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70776TD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G70783BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70795HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70815NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70839YE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G70857WY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G70881GH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G70912PH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70919RK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70928KV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G70943ER", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G70962SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70976HA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70980PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G70985IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71016LJ", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G71031QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71037KV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G71041DQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71057CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71070JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71072JD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71077LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71089OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71091AL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71091TJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71093FQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71094KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71107CC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G71121NN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71133TI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71138QD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71139HJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71159AI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71165VR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G71174VV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71202JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71222KY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71229DV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71234WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71247WG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71249CV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71275SD", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G71283AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71304WV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71305OT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71306LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71307CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71313AZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71326BY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71331ST", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71338QU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71362YO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71378JW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71388VQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71391WN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71398ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71403JN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71409LF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71414GS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71446UK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71455DJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71461JM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71479KG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71487ZS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71494LB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G71502EE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71506JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71511JI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71520GT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71525IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71528GY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71538OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71549TN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71575PR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71586EH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71599VG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71620LJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71620VO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71624ZZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71680KG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71688TU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G71695GL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71698NY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71703UN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G71707QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71713QS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71719NW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71725KE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71767XQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71773FH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71816WC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71832QJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71832WA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G71835SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71839WD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G71847NN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71847XW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71910GL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G71913HX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G71918PA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G71951OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71953WK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71958XX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71961AV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G71964JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71966PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71969OB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G71989CT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71990XF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G71994UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G71999UY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72008IY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G72041CH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G72069QX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72070EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72130HX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G72154SP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G72175XZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72207TE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72246LI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G72261BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72263DG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G72279PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72287LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72289FX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72298WI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G72303HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72304KR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G72319HC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G72319UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72336LC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72356ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72379PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72405RM", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G72446TS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72452LM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72484IY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72526DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72539TP", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G72548AI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72554ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72558UT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72574NZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72579SX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G72596QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72603ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72614KG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G72620YF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72647JE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72647WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72648QI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72656BW", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G72665QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72673RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72693SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72729HN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G72734AU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72735TB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72736BF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G72745SQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72779EO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72790LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72790QJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G72827OW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72828HZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G72830DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72854ZT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G72879CL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72900AG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72902IR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G72911FU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G72914LC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G72929XF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G72935VB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72959NR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72986IT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G72992IV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G73019DE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G73029NN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G73033IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73076IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73077ZO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G73162BZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73168SJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G73184QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73195UA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G73200UX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G73203OQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G73209SM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73215YD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73313KA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G73318SN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G73323VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73328UF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73330CF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73344QV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73351YM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73373AY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G73382HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73394KQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73410LR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G73423PD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73429NT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G73432XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73440TD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73481KW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73487DJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73507OJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73507OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73510WB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73522II", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G73544PN", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G73573VW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73574DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73576SB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G73582RP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73609FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73616UE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G73653TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73663RH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73678DS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73707DO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73723ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73748DH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G73749NZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G73760YR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G73809WP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73819QW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G73829NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73851KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73857XE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73862MD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73882WS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73883TP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G73898EJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73909ZQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73913LV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73938VT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G73941VE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G73971ME", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G73988HM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G73991ZU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74012IM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74020TX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G74038AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74049SP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74084GS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74114HO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74130BZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G74130TT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G74163WT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74176HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74179EL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74206UC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G74225AH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74226VD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74228BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74241QD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74242PX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G74252EK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74286WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74287RU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74294TP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74307LW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G74307VA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74318WP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74324NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74339LA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74340SH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74376RF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G74396CO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74410JX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74426IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74440VS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74463NF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74471QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74473MP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74484ON", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74489AS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74491LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74503BE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74532PT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G74542HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74555XQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74589YB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G74603OI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74607VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74626LQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74632FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74632SL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74642TI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G74678FD", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G74678YC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G74679FP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74684ZW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74699ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74701OU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74702CZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74714MV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G74724PV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74758HW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74760GM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G74770TW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G74782FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74785LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74790FN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74793LO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G74799WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74808ZY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74814JR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74827ZJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G74836XO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74855ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74855JI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74855SC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74878YV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G74917JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74918VW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74929XO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G74941GK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74945NC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74950DJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G74959QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74960IM", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G74975UG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G74992YO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75011MA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G75017TA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G75031OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75032PM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75039PU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75042KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75081UH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75113PZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75120QY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75121VU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75153EW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G75168BA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75171WW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75178DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75192PM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G75212LV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75242PD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75248WN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G75300HM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G75321RS", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G75324CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75339KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75347TP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75376YT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75381CL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75389LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75398QL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G75407RU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75407SV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G75408KS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G75453GL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75462ID", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G75472OU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75480QF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75483WR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75498OJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G75500ME", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75510GI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G75518WT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G75528JJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G75547HK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75549SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75563VE", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G75565BZ", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G75583KV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75584YG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75586OT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75594JP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75597IN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75599HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75621PH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75637RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75642KI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G75646NW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75648IS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75650VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75655AB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75687SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75701WO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75704MB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75709RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75717AV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75726JQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75748QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75749JP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75783XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75786FQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75828CP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75834EU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G75842YX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G75851ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75868SR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G75905JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75906TR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G75924IA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75927LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G75936VJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75974DW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G75975LI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G75999PF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76020RM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G76031FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76036GS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76082SD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76097GZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76104SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76133WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76154QC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G76173TA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76200OU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G76213KN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76214JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76243MI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76247UK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76299ZG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76317AM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76330SV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76343XZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76351FY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76355TG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76362LL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G76370WH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76385PD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76387IG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76389HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76420FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76429IN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76431SN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76459ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76465IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76470HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76481US", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76500NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76505ZE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76524PQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76525MF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76526WR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76544YY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76561LL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76599ZT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76603DR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G76607YV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G76614XW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76636VL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76703CC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76725JQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76726PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76748ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76763LN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G76789KR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G76844PH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76855CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76863NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76874HM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76876LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G76881UY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G76910CD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G76962UC", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G76974OT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G76986FH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76993QS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G76994RW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G76997PL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77000EG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77063JN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77065ZV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77076CV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77078YI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77095CK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77101QR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77109JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77122LF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77136XW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77141HO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77149IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77151XM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77194JD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G77208XM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77211VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77213YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77218JF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G77259GO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77264UN", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G77311AH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77353TH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77395DA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77400TS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77413CE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77477NL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77481LZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77497MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77503IE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77515ZX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77535NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77546PH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77550KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77555YU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77557JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77590TW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77597MJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77627AJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77628RQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77633IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77646IY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G77652GC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G77674IK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77685SR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77690ZC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77696IB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77727WY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77740PR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77757UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77792ZA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77814AS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77843RR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77851XO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77864MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77900OU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G77906ZO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77915WT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G77937PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77938VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G77938WM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G77945NE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G77960OV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G77967JJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G77970DT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G77993ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78011OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78016MI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G78032US", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78033ER", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78034SR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78056MI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78104ML", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78106KK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78108ZM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78122DT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G78127DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78134HQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G78156NN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78202HA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78239OD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78241UJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G78248QX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78262KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78263WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78293EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78306GH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G78312BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78314LL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G78315BS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78315FS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78333MH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78369LH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78372JK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78429YP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78436BB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78450WR", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G78475DU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78482II", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G78482IS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78519JI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78533WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78592EW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78617GO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78641UQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G78657XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78668AS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G78695ET", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78698EP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G78713VS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78729FV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78734OE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78742PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78744AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78757VY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78759XX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78767YD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78768PN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78778QM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78783JO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78788QJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78789AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78792AJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78792RY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78811IE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G78830IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78843SE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G78856SO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78859BS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G78880TG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78900SX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78915OI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G78918BK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78928PU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78930SC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G78990OC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G78992FU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G78999VN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G79011EQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79017QZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79019WG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79021MB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79021WI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79034WL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79035QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79039LV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79056JA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G79083TY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79093TF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G79120BW", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G79137TM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G79150MP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G79151XT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G79168SD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G79177TQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79222ND", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79224KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79243QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79246GM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G79254LX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79301TW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79308EQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79311OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79323CW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G79364NZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G79372AN", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G79384AQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79385UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79388TI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79464QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79492YL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79562FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79566BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79578AN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79600DE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G79619FY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79627VE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79690CD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79718RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79730DI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79735PS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G79745IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79749ZY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G79762CW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79762KQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79763SM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G79764DY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G79779MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79787PB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79788QE", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G79798AT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G79828LU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G79855KD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79878OX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G79889QN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79890WA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G79913NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79915IB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G79968EZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79976GJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G79991RJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G79994XR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G80027ER", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80055EX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80068SW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G80106WE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80111QD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80118LE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80147HT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80148RS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80164MG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80176YK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80187JE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80187RV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80188JS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80204VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80209RM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80214IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80217RM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80228HI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80235JY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80251DR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80281PU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80288AX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80306SV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80308BA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80316IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80325WI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G80343TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80345NV", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80346ZU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80362CW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80367EB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80396YJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80399EG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80403NF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80418BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80418WK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G80425FZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80428YE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G80434TI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80479HQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G80483TF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80484RY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80489MK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80509FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80511NN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80562EG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80565QS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80569VM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80569XM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80577JZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80577OW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80586FE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80618TG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80643JD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80649OD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80667HT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80678HX", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80690PN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G80692PL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80700YJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80708VG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80719YH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80726UW", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G80729IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80736RG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80738BU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80738PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80758JE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G80762WG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G80777VG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80778GE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80787JJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80874VF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80879EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80884ES", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G80903UK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80903ZD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G80951VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G80960YD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81002OL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81013HU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81016SV", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G81041HS", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81082JG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81096BD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81112MA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81115FG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81126MU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81167HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81213GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81214EK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81217LD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G81219YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81221QB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G81225OR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81272FZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G81303NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81370GY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81371RJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G81420KA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81439BR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81466NG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81471KU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G81473HY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81520BE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81534KB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G81541IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81568VW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81598AZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81628EZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81632WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81680BU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81702BT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G81725CS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G81748GB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81753IL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G81759TU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G81778DU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81787XH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G81797TX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81825YE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81832CY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81832XS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G81844SB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81881TF", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G81902IO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81909AL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G81921LU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81944UV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81962WP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G81991FU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82028JI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82049CD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82054AK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82058GP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82083TQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82092PV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82110XO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82133EG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82147MI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82152YZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82155DA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82175BQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G82186ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82195SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82216JH", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G82222XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82243CK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82249SB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82251ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82264VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82267MT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82285OB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82286VD", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G82305SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82317GV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82324DC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82334OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82354BQ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82362HL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82363EY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82366DK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82370DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82379LH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82393KC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82406IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82407GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82412EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82412NE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82426OW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82427FY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82437NT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82463EY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82469TL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82512PT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82621TY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82638QD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82651UV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82680GQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82680KA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82693QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82698QQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82699CV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82700SN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G82714WL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82724OR", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82737ZO", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G82785ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82790IO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82806QI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82831RJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G82840TE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82862JX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G82870SE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82881HF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82882LR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82905PO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82906DM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82913AR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G82913EE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G82947ES", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G82947LB", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G82950HY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82952OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G82970CD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G82987BA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83009HN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G83015GK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83029ZD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83048UX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83068AX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83080DP", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G83092KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83103PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83104JJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83120VA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83134ZR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83140GU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83155KW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83192EO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83206CA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83232LD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83238IZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83241PZ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83244OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83261UB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83344UL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G83362WE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83364CQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83412BV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83412LT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83423NX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83432YR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83434MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83476KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83479LG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83480VO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83483MN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83491LR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83495JN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83502DX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83514WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83517DN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83519QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83524RP", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G83546KK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G83561CI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G83565AD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83567OS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83580CS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83620XJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83623GP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83643ND", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G83646AE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83694JC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83697JV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83700KR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83719UD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83732YI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83736YU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G83740WV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G83754KL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83781BA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G83808HF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83827QM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83831AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83833YG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83843GL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83885CD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83894HO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83897FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83920DK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83928VU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83940OS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G83944UI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G83950JR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G83952ID", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G83997BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G83998HE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84003GC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84010XP", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G84032TK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G84064VM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84071MB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84122DM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84146JE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84147VQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G84168WH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84182AF", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G84184XU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84205RB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84228OY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84243HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84264WM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84273UX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84275GW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84277NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84279CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84285WO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84332AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84360YQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84366AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84398ZW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84459ZZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84466TC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G84502HG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G84503DF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84504MZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84507CY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84515GE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84517LG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G84532IX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84539VP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84550DH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84559PU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84571QT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84579JI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G84596RP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84641CT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84646MS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84647SC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G84662EV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84663MB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84675XL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84731OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84800MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84818UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84821OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84822FG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84823QS", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G84827GB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84853WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84880FB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84884IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84906AJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84906ML", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G84910XD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84917IA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84919ZX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G84958AF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G84969LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85002XD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85020KV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85039TI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85049LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85052OU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G85079IJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85083RQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85121CV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85145NA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G85174VD", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G85180ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85213IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85213NF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85214AZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85231EY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85243CH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85282JA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85284LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85284MK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85302NF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85310SF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85313YF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85315VP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85342DQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85343TN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G85357PU", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G85366AQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85366II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85389AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85392NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85393KI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85411LG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85431OK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85445QG", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G85463RK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85483NO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85490MF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85493TB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85496BH", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G85540GM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85545QE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85548QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85578HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85595RO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G85596OS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85608AG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85618IE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G85630KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85633MF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85670FA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85714GY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G85721WE", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G85734JO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G85736BH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85774KQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85821PU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G85828UH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85851IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85862MS", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G85864UD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G85887XT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85890AG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G85899UL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G85907UO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85924HA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G85947FY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85971OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85972OZ", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G85972YO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G85977BN", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G85997RC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86002IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86013XY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86050NV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86069NX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86072HT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86082YL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86083AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86085BW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86085HN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86117ZB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G86118SN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86130AV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86164WK", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86167MF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86173MX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86186US", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86193XM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86196JH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86198MF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86199GK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86206OP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86221TG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86227LF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86239DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86248YA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86294AN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86300ZI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G86304WJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G86320XR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86330CJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86354VJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86365HP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86372GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86375CM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86387VT", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G86389LM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86407VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86443JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86450IC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86454PA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86469VE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86472WY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86480FG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86499WY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G86533KK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86537AD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86557DD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86571PO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86574WP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86584AI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86627OG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86634NY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86654VS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86655NE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86656HK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86669AN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86682HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86702JK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86718YQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86728DD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G86732WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86733FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86736BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86737YW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86738PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86742LS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86750UT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86782PI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G86783GV", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G86838HC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86861MW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G86871XB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G86889SJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86908OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86917QS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86944DR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86947FH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G86948NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G86954HB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G86979CW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87014UA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87019OZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G87030ZZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87057NG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G87063TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87103TP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G87124AC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G87157JK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87218FV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87244KP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87249CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87253VG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87256FP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87280CM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87293LX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G87310ZF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87313SD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87328UF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G87360YD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G87418QZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87420IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87444MS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87459HA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87493YB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87514QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87528ZH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G87570GQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G87574LM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87615UU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G87628EQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G87648QA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G87649DU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87666TN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87676CC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87683NV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87755UZ", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G87756AW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87758PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87772NA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87779WY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87797TV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87808DX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87819IQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87847UQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87925KZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G87935YG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G87945CD", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G87972UK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G87984PA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G87996EB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88014YP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G88035KQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88038KU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88043PD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88050IP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88055WY", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88089UV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88097LH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G88122BX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88139CF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88142QX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G88143XD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G88162NH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88184ME", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88188XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88204LN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88212BS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88216WD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88230UV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88233EF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88254XP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88256EZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G88263BY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88268AZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88274IU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88286DF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88286KJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88313DY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88336BP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88347ND", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G88356CV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88357PE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88366YR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G88371FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88376DR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88381SG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88386KM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88388NU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88431RN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88432QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88448RB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88449YB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88457GX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88463NE", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G88464ZX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88486YW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88500KL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88505QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88508SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88518CI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G88525XI", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G88528AI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88541AN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G88557YZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88567RB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88599FO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88609PK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G88624YG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88635SO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88641OZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88642TF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88678EQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88687UE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88689KL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88695TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88696BY", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88708RX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88721JO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88725FA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88743SZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G88759BF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88770MJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88776LK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88780VN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G88787RV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G88796VX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88815IR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G88828CK", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G88830DA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88837PJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88843AF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88850TN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88856QG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88906FZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88908BO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88936JZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88938QF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G88955WS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G88975RE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89009CR", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89010BO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G89019WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89026DU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89058HG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G89058LG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89089XB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89104MS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89107UR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89119ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89129AU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89136NX", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89137AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89169IY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89182DO", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G89210OT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89215CC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89230YO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89233QM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89242LQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89242PW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89257WJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89270VP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89278UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89315II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89328HG", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G89337EE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89354EL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G89355NY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G89380NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89398MH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89477FF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G89524PP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89536HI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G89541GZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89544LF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89570VS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G89585FG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89586YI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89597IJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89603EU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89605NX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G89609RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89611JH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89646CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89649RN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G89661WR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89720WL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G89721BJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89748NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89749SX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89753PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89769RM", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89798IM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G89803II", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89816MU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89854YO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89870ED", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89870OL", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G89897ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89899YC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G89928FY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G89946SW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G89948OA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89973QY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G89978WX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G89990JE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G89996XH", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90000ZH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90011DC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90011PP", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G90047IV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90054DB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90057EW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G90077BJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G90079WZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90098HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90103MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90135ZJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90146ME", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90153WX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90182FM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90205AB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90221FQ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90233EO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G90242XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90244OP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G90251SV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90295ID", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90298QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90310QP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90310YO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G90334GI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90350EB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90351WW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G90375IE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90402OU", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90423CD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90436CB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90439ZM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90451QF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90479ES", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90487UB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90494RK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90510OM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90529LH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90561GD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G90572ER", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90575VK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90628RS", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G90630JW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90634OE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90639RS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90657JS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90684PC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90689AW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90719NY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90724OH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90739UE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G90743KX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90746ZG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90754EO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90767ZX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90771OP", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90771UI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G90788JL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90789UO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90791MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90794QI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90816KP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90818DN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90829NZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90877FW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G90901EO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90903RC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90926WR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G90928ZN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90935OH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90936JJ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G90952OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90965BZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90974OV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G90999PU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G90999QY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91016QL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91017HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91021AJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91041PO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91043NZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91047NA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91067ZR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91069QW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91083FL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91093AL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G91124TR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G91135NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91143IL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91144VS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G91151HA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G91161VR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91166AC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91181WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91184FE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G91191RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91227PM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91227UA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91236EO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91313DF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G91322OS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91368WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91392GZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G91410ZU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91447PN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91459EI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91474LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91484JV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91484XT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91509JK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91523GT", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G91561TB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G91563MR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91583LA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91596AH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91618RS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91627PX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91637SF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91659ZV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91662EF", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G91669BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91684MM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G91687HB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91724MB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91731DX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91732VA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91738GX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91756JQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G91757WO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91775YA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91777HP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G91786NX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91788FV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91799SO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91803IU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91807FJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G91809FZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91827RZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91843YE", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G91863BD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91875JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91881LP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G91883RB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91898TC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G91945VH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G91965NG", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G91990OC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G92017SL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92019ZO", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92032WO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92097UM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92115PW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92115RL", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92127GC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92130WF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92142RG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92155IO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92175OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92179IH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92184RD", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G92190YN", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92194JK", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G92215RW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92225FJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G92232VN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92252GS", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92264YI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92281IL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92288VL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G92296LB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92302BV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92318PO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92324IJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92327HS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92332SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92332WW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92333JS", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G92345KY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92354TO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92358PV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92378XH", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G92388MC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92389OS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G92399AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92399PD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92399RB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92410QB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G92424DL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92440ZF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G92444JZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G92485YK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92487PT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92490QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92500NQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92501LD", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92509CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92593OX", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G92594CB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G92666GK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92694MO", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G92716MQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92734HI", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G92740EF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G92796NN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92797EC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92808AT", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92829RR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92834ME", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G92838RO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92928SW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G92933OP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92933SR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G92980WM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G92982UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93000QZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93045SX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93073GJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93088DU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93090IR", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93160RG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93184BI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93191IF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93195AE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93213IL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93227HA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93239VC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93242HC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G93258UI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93270TB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93278FL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G93279YE", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93296CH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93309ZC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93333OF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93337VO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G93346ZS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93364WV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93365WI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G93389TU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G93450CE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93461HH", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93470LV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93476UL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93493GN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G93503MM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93505VZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93515DH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93520MA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93523MF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93526OI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93533JW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93542QZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93543SY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93560KS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93577ZC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93592ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93596GX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93597FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93612TS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93612YS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G93626XM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G93627NS", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G93630PR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93636BY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93691AZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93692RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93696JX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93706QR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93763TV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93774RM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G93774WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93791KT", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G93801LA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G93802CF", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G93814YA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G93825UP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G93828IC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93830FP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93861DJ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G93861XR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93867XX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93909NH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93910CU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93911DY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93924RQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G93935AM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93941QH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G93948SP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93984MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93987XA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93994EV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G93996ZB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94005KC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94025TC", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G94058TU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94062FP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94070ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94072JB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94085VM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94092LO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94146NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94161VQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94178IQ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G94180RN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G94216WA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94217FB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94222CK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94234FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94244YQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94260JY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G94264FX", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94285QA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G94304ZN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G94306LD", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94351CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94352TY", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G94374SB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94397HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94416QP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94435QH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94442KU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94449FH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94470EI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G94477RP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94502LK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94505FR", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G94510EL", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94514IB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94517VF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94541HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94566ZN", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G94577KW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94586KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94593TA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94595ZZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94599CR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94599QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94615OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94618YC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G94621HP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94627QP", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G94677FK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94682VY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94705OR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94718XM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G94722MO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94768NG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94791MM", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G94808GT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94808XV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94817WU", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94824OK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94849XM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G94850BN", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G94850KK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94854QH", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G94855OA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G94895HH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94900KH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94906EX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94925SE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G94930MP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94938LU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G94941PK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G94971CC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95003CS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95006CL", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G95035TM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95054VP", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G95114RJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95144UL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95151JF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95159TE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G95259QI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95273RH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G95292IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95304AA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G95324VU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95329IQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95343SU", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G95353IZ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95370BC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95397YW", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G95415HZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95430GC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G95438ID", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95448VV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95455DG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95509VI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95515SK", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G95518AM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G95532JO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95560ML", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95586IZ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95593KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95615QI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95620GE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95648NB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95664HQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95675JM", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95698VF", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95706CX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95715FI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95715NY", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95739UA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G95739WE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95740GH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95763TD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95776WU", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G95809LN", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G95812KU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95872RH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G95889EP", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G95890CG", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G95915TY", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G95925PE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95936DV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95961OC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G95963UH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95981KO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G95990QC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G95994QZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G95997AL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96005ME", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96017QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96018DP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96039NQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96057TO", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96066HD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96067FK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96079CK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96093AA", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96099JL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96105BP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96107WD", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96115PK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96119TZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96142QQ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96169RK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96174JO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G96334ZO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96336FY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96349IQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96349RY", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96367AD", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96371NV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96373OE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96409DQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96416ID", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96416NB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96425TB", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96463EY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96464LK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96464PC", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96483ZT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96503AM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G96540EH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96568SI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96576RP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G96576WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96588SJ", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G96599KT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96600WW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G96622FI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96631UP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96636JK", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G96643WB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96653KP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96663HG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96679EA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96691CI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96715CG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96735SK", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96738CW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96746BC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96748VF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96758WF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96763TB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96783GY", "type": "O-linked", "subtype": "Core 7" }, { "glytoucan_ac": "G96793JK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96811WN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96812PM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96820VB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96828EA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96857WY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96890VV", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96899NE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96902HX", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96914KL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96915PP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96921JI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G96935KI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G96943FZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96950XO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96951LZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G96971EN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96977LS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G96984EM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97082HJ", "type": "O-linked", "subtype": "Core 5" }, { "glytoucan_ac": "G97083VO", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97084CG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97118EJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97123YR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97127IZ", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G97154XB", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G97160DA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97165QS", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97192BE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97213ID", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97227KS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97263AV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97269SV", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97271OF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97316FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97345NY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97347WG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97373KA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G97413OV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97420WF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97423YZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97425NF", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G97436MG", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G97436XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97437DL", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G97452SL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97463WM", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97473TX", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97494HI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97515HE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97529OC", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97553OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97561SL", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97578GB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97582XN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97585KM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97586IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97595JJ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97600FR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97600OZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97608ZP", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97643UW", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G97644GG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97647MG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97657WO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97763JB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97777ZK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97793RN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97808FL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G97811LK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97834OQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97840DJ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97841LZ", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G97850YT", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G97852WM", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97857BW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97860FK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97863GV", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G97872RT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G97886SP", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G97900CQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97906UF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G97923LO", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G97956ZX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97965SK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G97972BA", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98003WW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98007XA", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98008PC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98038DF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98073MH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98074JA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98089PE", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98126OX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98127AN", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98166HB", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98166ZJ", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G98200VV", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98264BW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98270SB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98279FP", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G98308VA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98319WB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98327TQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98340SM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98353BT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98383AS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98393IW", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98412TA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98417SQ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98423LY", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98437LC", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98459DZ", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G98473NJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98477QQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98479SI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98499YC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98518WL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98522DF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98525PI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98535LH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98540XI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98541DI", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98572QE", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98579QO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98621JL", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G98654DA", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98658WC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98664QA", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G98688IJ", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98689EK", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98695CG", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98698LI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98744TO", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98745FI", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G98753FD", "type": "O-linked", "subtype": "Core 3" }, { "glytoucan_ac": "G98771BG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98786OF", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98795OG", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98798WK", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98817QU", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98873GM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98891IZ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98912YW", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G98925GS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98940EW", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G98944UB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G98950NH", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G98975FF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G98977CH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99005CT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99019AH", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99039KB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99041WC", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99041XF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99069BG", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99137GH", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99146BF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99163JB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99221NU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99231ED", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G99236CU", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99241BD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G99244AI", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99264QJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99269VU", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G99281CN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99298LT", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G99315PE", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99329AX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99354AR", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99365LP", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99368YN", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G99372JL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99375YM", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99382PO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G99388YO", "type": "O-linked", "subtype": "Core 9" }, { "glytoucan_ac": "G99394BY", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G99402IB", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99415KF", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99419FW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99423WT", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99435JQ", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99448MJ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99454KR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99457YH", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G99464KD", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G99466GU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G99507PM", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G99517NL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99522JL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99527BL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99539HR", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99556PB", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99567UC", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99571MI", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99619WE", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G99632DB", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G99650PY", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99657DS", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99667HV", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99691UT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99709XR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99725YQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99728AI", "type": "O-linked", "subtype": "Core 8" }, { "glytoucan_ac": "G99730GF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99738HT", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99738PW", "type": "Other", "subtype": "Other" }, { "glytoucan_ac": "G99752IF", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99770FX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99772FN", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99772YU", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G99783GX", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99785MW", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99792ZO", "type": "O-linked", "subtype": "Core 4" }, { "glytoucan_ac": "G99833CR", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99839QA", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99893CA", "type": "O-linked", "subtype": "Core 6" }, { "glytoucan_ac": "G99938VL", "type": "O-linked", "subtype": "Core 1" }, { "glytoucan_ac": "G99987ZQ", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99988WL", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99991DB", "type": "O-linked", "subtype": "Core 2" }, { "glytoucan_ac": "G99998AA", "type": "O-linked", "subtype": "Core 2" } ], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 303 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 413, "end_pos": 415 }, { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSP4-1", "uniprot_ac": "F1SSP4", "uniprot_id": "F1SSP4_PIG", "mass": { "chemical_mass": 57807.0, "monoisotopic_mass": 57807.0 }, "refseq": { "ac": "XP_003360114", "name": "T-complex protein 1 subunit theta-like 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360114" }, "gene_names": [ { "name": "CCT8L2", "type": "recommended", "evidence": [ { "id": "F1SSP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSP4" } ] }, { "name": "CCT8L2", "type": "synonym", "evidence": [ { "id": "XP_003360114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360114" } ] } ], "protein_names": [ { "name": "Chaperonin containing TCP1 subunit 8 like 2", "type": "synonym", "evidence": [ { "id": "F1SSP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSP4/entry#names_and_taxonomy" } ] }, { "name": "T-complex protein 1 subunit theta-like 2", "type": "synonym", "evidence": [ { "id": "XP_003360114", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360114" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSP4", "url": "https://www.uniprot.org/uniprotkb/F1SSP4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCT8L2", "url": "https://www.uniprot.org/uniprotkb/F1SSP4", "locus": { "chromosome": "18", "start_pos": 4979436, "end_pos": 4981076, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016428", "url": "https://www.ensembl.org/id/ENSSSCG00000016428" } ] } } ], "crossref": [ { "id": "F1SSP4", "url": "https://alphafold.ebi.ac.uk/entry/F1SSP4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016428", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016428", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623016", "url": "https://www.ncbi.nlm.nih.gov/gene/100623016", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027413", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027413", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623016", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623016", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YSVMNTH", "url": "https://omabrowser.org/oma/group/YSVMNTH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSP4", "url": "https://www.orthodb.org/?gene=F1SSP4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00118", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00118", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003360114", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360114", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSP4", "url": "https://www.uniprot.org/uniprotkb/F1SSP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SSP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSRAPPAPQLPERLGTQVEEKHLLSSLAAAQALATVLRPCYGPQGLQKLLVTAKGETVFTGYATAILRALQLEHPAARLLREAAQGQAEQSGDGVAFVVLLAQALLAQAEDLLRAGLPRAQLREAYAAAAAETLALLPSLAIRSLGPLEDPFWALHSVMTTHTLAQGDRLTKMVAHACSATRELDGAFRPERVGVCALPGARLEDSCLLPGLALPGKPCGQVTMVQRGARVALLACAFGPARPIAPATALLSSPADLTELPKGSERLIEKQVGQLAAASINVVVVWGDIDEETLTQADQLGLMVIQVQSRREMVYLSEVFGTPLMPYLLPPLQPGKCQRVYGQELGEGLAVVFEWESPGTPALTLVLRGATAEGLRRAEQAVYHGIDAYFQLCQDPRLLPGAGATEMALAKMLSEKGTKLEGPSGPAFLAFAQALKSLPKTLAENAGLAAADVMAEMNGAHQAGNFLMGVGVEGTINVAREQVWDTLIAKAQGLRAAADVVLQLLTVDDIVVAKKCPTPQQDLNPDAEKPKERPSPVKKISPWKK", "length": 546, "header": "tr|F1SSP4-1|F1SSP4_PIG Isoform 1 of Chaperonin containing TCP1 subunit 8 like 2 OS=Sus scrofa OX=9823 GN=CCT8L2 PE=3 SV=3 CANONICAL=F1SSP4-1" }, "isoforms": [ { "isoform_ac": "F1SSP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SSP4/entry#F1SSP4-1", "sequence": { "sequence": "MGSRAPPAPQLPERLGTQVEEKHLLSSLAAAQALATVLRPCYGPQGLQKLLVTAKGETVFTGYATAILRALQLEHPAARLLREAAQGQAEQSGDGVAFVVLLAQALLAQAEDLLRAGLPRAQLREAYAAAAAETLALLPSLAIRSLGPLEDPFWALHSVMTTHTLAQGDRLTKMVAHACSATRELDGAFRPERVGVCALPGARLEDSCLLPGLALPGKPCGQVTMVQRGARVALLACAFGPARPIAPATALLSSPADLTELPKGSERLIEKQVGQLAAASINVVVVWGDIDEETLTQADQLGLMVIQVQSRREMVYLSEVFGTPLMPYLLPPLQPGKCQRVYGQELGEGLAVVFEWESPGTPALTLVLRGATAEGLRRAEQAVYHGIDAYFQLCQDPRLLPGAGATEMALAKMLSEKGTKLEGPSGPAFLAFAQALKSLPKTLAENAGLAAADVMAEMNGAHQAGNFLMGVGVEGTINVAREQVWDTLIAKAQGLRAAADVVLQLLTVDDIVVAKKCPTPQQDLNPDAEKPKERPSPVKKISPWKK", "length": 546, "header": "tr|F1SSP4-1|F1SSP4_PIG Isoform 1 of Chaperonin containing TCP1 subunit 8 like 2 OS=Sus scrofa OX=9823 GN=CCT8L2 PE=3 SV=3 CANONICAL=F1SSP4-1" }, "locus": { "chromosome": "18", "start_pos": 4981076, "end_pos": 4979439, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017889.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017889.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017408.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017408.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSP4", "url": "https://www.uniprot.org/uniprotkb/F1SSP4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623016", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623016", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1MY24-1", "protein_name": "T-complex protein 1 subunit theta-like 2", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDRRAPPTAPELPERLPAEEKHLLSSLAAADTLARVLRPCYGPQGRQKLLVTAKGDTVLTGHAAAILRALQLEHPAARLLREAAQGQAEQSGDGAAFVVLLAQALLAQAERLLRAGLPRAQLREAYAAVAAETLALLPSLAVRALGPLEDPVWALRSVMNTHALWRTDHLAGLVARACWATRELDGGFRPERVGVCALPGARQEDSCLLPGLALPGKPCGQVTMVLSGARVALLACDFGPARPLAPATARLSSPDDLIRFRKGSESLIEKQVAQLAAAANVVVVSGDIDEKTLTHADKYGLMVIQVASRREMVYLSEVLRTPLTPYLVPPLEPGKCQRVYGQELGEALAVVFEWESTGTPALTLVLRGATAHGLRGAEQAAYSGIDAYFQLCQDPRLLPGAGATEMALAKMLSETGTKLEGPNGPTFLAFAQALQSLPETLAENAGLAVPHVMAEMNGAHQAGNFLIGVGVEGIINVAQEEVWDTLIAKAQGLRAVADVVQQLLTVDDIVLAKKSPACPQDPNPEPKKRSARPLQLFLKSILGMYNKR", "length": 548 }, "evidence": [ { "id": "F1SSP4", "url": "https://omabrowser.org/oma/group/F1SSP4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HB52-1", "protein_name": "T-complex protein 1 subunit theta-like 2", "gene_name": "Cct8l2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVSPSSLQDGPFGDKPSKVPSALELPQRVGPNLEKKGQSVGQEDSCILRATAAAQTLANIIRPCYGPYGRQKFLVTAKGKIVCTGHAAAILRALELEHPAAQFVREVAQTQAENTGDGTAFVVLLTEALLEQAQYLLCAGLARTQLREAFATATAEVLTALPSLAIRSLGPLEDPSWALHSVINTHTLTDTDFLTKLVAHACWVSREPNGTFKPEHIGVCSLQGGALIDSCILSGLVISGKPCGQKTEVPANARVALFICPFGPANPFALATPRLDNMEELLRFQKQTEQLQKEITQLAVMDINVAVVWGEVDENTVVQADDCGIMVIQVSSRKDMVYLSEMMGTPLLTRLLPPLQPGNCQKVYSYQLQDGVVVIVFEWKPESAPSLTVVLRGPTIQGLRGAEQAVYYGIDAFAQLCQDPRLLPGAGATEMALAKILTDKGSRLAGPNGLAFLAFAQALSSLPKTLAENAGLDARSVMAEMSGIHQVGNFLIGVGTDGIINATHEGIWDILRAKAQGLQAVAELVQQLVTVDEIIVAKKTPPTYQQTSRPTSKERGSSSLREKVFGKYVL", "length": 571 }, "evidence": [ { "id": "F1SSP4", "url": "https://omabrowser.org/oma/group/F1SSP4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3B7U6-1", "protein_name": "Chaperonin containing TCP1 subunit 8 like 2", "gene_name": "Cct8l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPPPPSTPPKTPNTMAFLHSSSIVQFECRHSNTSSRLLLILVLVLCGTLGTSVPSKQPRQSSLGTRSVSELSTVKVTQTKVQSDLELPQRLKLGLEKNPESQGEEPLCILRATAAAQTLASIIRSCYGPYGLQKFLVSAQGETVCTGHAAAILKALELEHPAARFVQELAQTQAENTGDGTAFVVLLTEALLEQAQYLLWAGLTPAQLREAFVTATAEVLTALPSLAICSLGPLEDPSWALYSVMSTHTLSNAEYLTKLVAQACWISREPNGSFKPESIVVCILQGGILTDSRIIPGIAICGKLCGRKTEVLNDARVALFNCPFGPSNPFAPATLRLSSPEELIRFRKQTEQVEMEIAELAMMGINVAVVLGEVNERSVDQADYCGVMVIQVKSRKEIVYLSDKLGVPLLNRILPPLEPGKCHKVYRMEFGESALIMFEWEREIAPFLSVVLRGPTIQGLRGAEQAVYYGIDAFSQLCQDPRLLPGAGATEMALARMLVDKGSRLDGPNGLAFQAFAQALSSLPKTLAENAGLAAQSVLAEMSGYHQAGNFVIGVGTDGLVNVAQEGIWDILRTKAQGLQAVTGLVQQLVTVDQIIVARKTPRYRLIPQSAQNANTSSPLRAKFFGKYE", "length": 629 }, "evidence": [ { "id": "F1SSP4", "url": "https://omabrowser.org/oma/group/F1SSP4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96SF2-1", "protein_name": "T-complex protein 1 subunit theta-like 2", "gene_name": "CCT8L2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDSTVPSALELPQRLALNPRESPRSPEEEEPHLLSSLAAVQTLASVIRPCYGPHGRQKFLVTMKGETVCTGCATAILRALELEHPAAWLLREAGQTQAENSGDGTAFVVLLTEALLEQAEQLLKAGLPRPQLREAYATATAEVLATLPSLAIQSLGPLEDPSWALHSVMNTHTLSPMDHLTKLVAHACWAIKELDGSFKPERVGVCALPGGTLEDSCLLPGLAISGKLCGQMATVLSGARVALFACPFGPAHPNAPATARLSSPADLAQFSKGSDQLLEKQVGQLAAAGINVAVVLGEVDEETLTLADKYGIVVIQARSWMEIIYLSEVLDTPLLPRLLPPQRPGKCQRVYRQELGDGLAVVFEWECTGTPALTVVLRGATTQGLRSAEQAVYHGIDAYFQLCQDPRLIPGAGATEMALAKMLSDKGSRLEGPSGPAFLAFAWALKYLPKTLAENAGLAVSDVMAEMSGVHQGGNLLMGVGTEGIINVAQEGVWDTLIVKAQGFRAVAEVVLQLVTVDEIVVAKKSPTHQEIWNPDSKKTKKHPPPVETKKILGLNN", "length": 557 }, "evidence": [ { "id": "F1SSP4", "url": "https://omabrowser.org/oma/group/F1SSP4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SSP4", "url": "https://www.uniprot.org/uniprotkb/F1SSP4" } ], "pmid": "" }, { "name": "unfolded protein binding", "id": "GO:0051082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051082", "evidence": [ { "database": "UniProtKB", "id": "F1SSP4", "url": "https://www.uniprot.org/uniprotkb/F1SSP4" } ], "pmid": "" }, { "name": "ATP-dependent protein folding chaperone", "id": "GO:0140662", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140662", "evidence": [ { "database": "UniProtKB", "id": "F1SSP4", "url": "https://www.uniprot.org/uniprotkb/F1SSP4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F1SSP4", "url": "https://www.uniprot.org/uniprotkb/F1SSP4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "chaperonin-containing T-complex", "id": "GO:0005832", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005832", "evidence": [ { "database": "UniProtKB", "id": "F1SSP4", "url": "https://www.uniprot.org/uniprotkb/F1SSP4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSP4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 546, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSP4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSP4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SST5-1", "uniprot_ac": "F1SST5", "uniprot_id": "F1SST5_PIG", "mass": { "chemical_mass": 26067.0, "monoisotopic_mass": 26067.0 }, "refseq": { "ac": "NP_001231346", "name": "rho-related GTP-binding protein RhoV", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231346" }, "gene_names": [ { "name": "RHOV", "type": "recommended", "evidence": [ { "id": "F1SST5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ] }, { "name": "RHOV", "type": "synonym", "evidence": [ { "id": "NP_001231346", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231346" } ] } ], "protein_names": [ { "name": "Ras homolog family member V", "type": "synonym", "evidence": [ { "id": "F1SST5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SST5/entry#names_and_taxonomy" } ] }, { "name": "ras homolog gene family, member V", "type": "synonym", "evidence": [ { "id": "NP_001231346", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231346" } ] }, { "name": "rho-related GTP-binding protein RhoV", "type": "synonym", "evidence": [ { "id": "NP_001231346", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231346" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RHOV", "url": "https://www.uniprot.org/uniprotkb/F1SST5", "locus": { "chromosome": "1", "start_pos": 130445661, "end_pos": 130443579, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004758", "url": "https://www.ensembl.org/id/ENSSSCG00000004758" } ] } } ], "crossref": [ { "id": "F1SST5", "url": "https://alphafold.ebi.ac.uk/entry/F1SST5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004758", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004758", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04130", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04130", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100154565", "url": "https://www.ncbi.nlm.nih.gov/gene/100154565", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154565", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154565", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TPELGIK", "url": "https://omabrowser.org/oma/group/TPELGIK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SST5", "url": "https://www.orthodb.org/?gene=F1SST5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24072", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24072", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9013424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231346", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231346", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SST5-1", "url": "https://www.uniprot.org/uniprotkb/F1SST5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPPRELSEAESSPLRAPTPPPRRGSASPELGIKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIELDQGGREGPVPEPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIENKARLEKKLNAKGVRTLSRCRWKKFFCFV", "length": 236, "header": "tr|F1SST5-1|F1SST5_PIG Isoform 1 of Ras homolog family member V OS=Sus scrofa OX=9823 GN=RHOV PE=3 SV=2 CANONICAL=F1SST5-1" }, "isoforms": [ { "isoform_ac": "F1SST5-1", "url": "https://www.uniprot.org/uniprotkb/F1SST5/entry#F1SST5-1", "sequence": { "sequence": "MPPRELSEAESSPLRAPTPPPRRGSASPELGIKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIELDQGGREGPVPEPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIENKARLEKKLNAKGVRTLSRCRWKKFFCFV", "length": 236, "header": "tr|F1SST5-1|F1SST5_PIG Isoform 1 of Ras homolog family member V OS=Sus scrofa OX=9823 GN=RHOV PE=3 SV=2 CANONICAL=F1SST5-1" }, "locus": { "chromosome": "1", "start_pos": 130444785, "end_pos": 130443684, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005257.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005257.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005130.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005130.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154565", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154565", "resource": "KEGG Pathway" }, { "id": "R-SSC-9013424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9013424", "resource": "Reactome", "description": "RHOV GTPase cycle" } ], "orthologs": [ { "uniprot_canonical_ac": "Q17QI8-1", "protein_name": "Rho-related GTP-binding protein RhoV", "gene_name": "Rhov", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPPRELSEAESSPLRSPTPPPGRGSASPELGIKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDLDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKGVRTLSRCRWKKFFCFV", "length": 236 }, "evidence": [ { "id": "F1SST5", "url": "https://omabrowser.org/oma/group/F1SST5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8VDU1-1", "protein_name": "Rho-related GTP-binding protein RhoV", "gene_name": "Rhov", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPPRELSEAEPPPLPASTPPPRRRSAPPELGIKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKGVRTLSRCRWKKFFCFV", "length": 236 }, "evidence": [ { "id": "F1SST5", "url": "https://omabrowser.org/oma/group/F1SST5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96L33-1", "protein_name": "Rho-related GTP-binding protein RhoV", "gene_name": "RHOV", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPPRELSEAEPPPLRAPTPPPRRRSAPPELGIKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQGLAEKIRACCYLECSALTQKNLKEVFDSAILSAIEHKARLEKKLNAKGVRTLSRCRWKKFFCFV", "length": 236 }, "evidence": [ { "id": "F1SST5", "url": "https://omabrowser.org/oma/group/F1SST5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "R4GKN9-1", "protein_name": "Ras homolog family member V", "gene_name": "RHOV", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPPQELLDYAPALRRHSPPRGSGPELGIKCVLVGDGAVGKTSLVVSYTTNGYPDEYQPTALDTFSVQVLVDGAPVRIQLWDTAGQEDFDCLRSLCYPDTDVFLVCFSVVNPSSFQNITEKWIPEIRTHNPRAPVLLVGTQADLRDDVNVLISLDRYHVKPVPRPQAEGLADKIRAEAYLECSALTQKNLKEVFDMAIVSGVEHKARQEKKMTAKGIKTLSKCRWKKFFCFV", "length": 231 }, "evidence": [ { "id": "F1SST5", "url": "https://omabrowser.org/oma/group/F1SST5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" }, { "name": "protein kinase binding", "id": "GO:0019901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019901", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "endocytosis", "id": "GO:0006897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006897", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" }, { "name": "actin filament organization", "id": "GO:0007015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007015", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" }, { "name": "small GTPase-mediated signal transduction", "id": "GO:0007264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007264", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" }, { "name": "regulation of cell shape", "id": "GO:0008360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008360", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" }, { "name": "establishment of cell polarity", "id": "GO:0030010", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030010", "evidence": [ { "database": "UniProtKB", "id": "F1SST5", "url": "https://www.uniprot.org/uniprotkb/F1SST5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SST5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 236, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SST5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SST5" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 120, "end_pos": 122 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SST8-1", "uniprot_ac": "F1SST8", "uniprot_id": "F1SST8_PIG", "mass": { "chemical_mass": 61942.0, "monoisotopic_mass": 61942.0 }, "refseq": { "ac": "XP_005672200", "name": "parathyroid hormone 2 receptor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672200" }, "gene_names": [ { "name": "PTH2R", "type": "recommended", "evidence": [ { "id": "F1SST8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ] }, { "name": "PTH2R", "type": "synonym", "evidence": [ { "id": "XP_005672200", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672200" } ] } ], "protein_names": [ { "name": "Parathyroid hormone 2 receptor", "type": "recommended", "evidence": [ { "id": "F1SST8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SST8/entry#names_and_taxonomy" } ] }, { "name": "parathyroid hormone 2 receptor", "type": "synonym", "evidence": [ { "id": "XP_005672200", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672200" } ] } ], "function": [ { "annotation": "This is a specific receptor for parathyroid hormone. The activity of this receptor is mediated by G proteins which activate adenylyl cyclase. PTH2R may be responsible for PTH effects in a number of physiological systems. It may play a significant role in pancreatic function. PTH2R presence in neurons indicates that it may function as a neurotransmitter receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8#function" }, { "database": "UniProtKB", "id": "ARBA00053481", "url": "https://www.uniprot.org/uniprotkb/ARBA00053481#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PTH2R", "url": "https://www.uniprot.org/uniprotkb/F1SST8", "locus": { "chromosome": "15", "start_pos": 111598829, "end_pos": 111509531, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016148", "url": "https://www.ensembl.org/id/ENSSSCG00000016148" } ] } } ], "crossref": [ { "id": "F1SST8", "url": "https://alphafold.ebi.ac.uk/entry/F1SST8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016148", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016148", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100170146", "url": "https://www.ncbi.nlm.nih.gov/gene/100170146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036445", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036445", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100170146", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100170146", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VDHWNKT", "url": "https://omabrowser.org/oma/group/VDHWNKT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SST8", "url": "https://www.orthodb.org/?gene=F1SST8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45620", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45620", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45620:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45620:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00002", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00002", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02793", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02793", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-373080", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373080", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005672200", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005672200", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SST8-1", "url": "https://www.uniprot.org/uniprotkb/F1SST8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARSGASLHLWGWVLLGGCLLAGAQLDSDGTITIEEQIVLVLKAKMQCELNITAQLQEGEGNCFPEWDGLICWPRGTVGKMSAVPCPSYIYDFNHKGVAFRHCNPNGTWDFMHGLNKTWANYSDCLRFLQPDISIGKQEFFERLYIMYTIGYSISFGSLAVAILIIGYFRRLHCTRNYIHMHLFVSFMLRAASIFVKDKVVHAHIGVKELQSLIMQGNLQSSIELPSVDKSQYIGCKIAVVMFIYFLATNYYWILVEGLYLHSLIFVAFFSDTKYLWGFTLIGWGFPAAFVTAWAAARATLADERCWELSAGDIKWIYQAPILAAIGLNFILFLNTVRVLATKIWETNAVGHDTRKQYRKLAKSTLVLVLVFGVHYIVFVCLPHSFAGLGWEIRMHCELFFNSFQGFFVSIIYCYGNGEVQSEVKKMWSRWNLSVDWKRTPPCGGHRYGSVLTTLTHSTSSQSQMAASTRSVLISGKAAKTAGPQPDSHVTLPGYVWSNSEQDCLPHLIHEEAQESNGRQGDEIPMEESSRRLDFNLDPEGGKGETEDAL", "length": 550, "header": "tr|F1SST8-1|F1SST8_PIG Isoform 1 of Parathyroid hormone 2 receptor OS=Sus scrofa OX=9823 GN=PTH2R PE=3 SV=2 CANONICAL=F1SST8-1" }, "isoforms": [ { "isoform_ac": "F1SST8-1", "url": "https://www.uniprot.org/uniprotkb/F1SST8/entry#F1SST8-1", "sequence": { "sequence": "MARSGASLHLWGWVLLGGCLLAGAQLDSDGTITIEEQIVLVLKAKMQCELNITAQLQEGEGNCFPEWDGLICWPRGTVGKMSAVPCPSYIYDFNHKGVAFRHCNPNGTWDFMHGLNKTWANYSDCLRFLQPDISIGKQEFFERLYIMYTIGYSISFGSLAVAILIIGYFRRLHCTRNYIHMHLFVSFMLRAASIFVKDKVVHAHIGVKELQSLIMQGNLQSSIELPSVDKSQYIGCKIAVVMFIYFLATNYYWILVEGLYLHSLIFVAFFSDTKYLWGFTLIGWGFPAAFVTAWAAARATLADERCWELSAGDIKWIYQAPILAAIGLNFILFLNTVRVLATKIWETNAVGHDTRKQYRKLAKSTLVLVLVFGVHYIVFVCLPHSFAGLGWEIRMHCELFFNSFQGFFVSIIYCYGNGEVQSEVKKMWSRWNLSVDWKRTPPCGGHRYGSVLTTLTHSTSSQSQMAASTRSVLISGKAAKTAGPQPDSHVTLPGYVWSNSEQDCLPHLIHEEAQESNGRQGDEIPMEESSRRLDFNLDPEGGKGETEDAL", "length": 550, "header": "tr|F1SST8-1|F1SST8_PIG Isoform 1 of Parathyroid hormone 2 receptor OS=Sus scrofa OX=9823 GN=PTH2R PE=3 SV=2 CANONICAL=F1SST8-1" }, "locus": { "chromosome": "15", "start_pos": 111597825, "end_pos": 111509813, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017581.3", "url": "https://www.ensembl.org/id/ENSSSCT00000017581.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017107.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017107.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100170146", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100170146", "resource": "KEGG Pathway" }, { "id": "R-SSC-373080", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373080", "resource": "Reactome", "description": "Class B/2 (Secretin family receptors)" } ], "orthologs": [ { "uniprot_canonical_ac": "E1B7Q8-1", "protein_name": "Parathyroid hormone 2 receptor", "gene_name": "PTH2R", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFQFLARAGLGMAGPGASLHFWGWLLLGCCILAGAQLDSDGTITIEEQIVLVLKAKVQCELNITAQLQEGEGNCFPEWDGLICWPRGTVGKTLAVPCPPYIYDFNHKGVAFRHCNPNGTWDFMHSLNKTWSNYSDCLRFLQPDINIGKQEFFERLYVMYTIGYSVSFASLAVAILIIGYFRRLHCTRNYIHMHLFVSFMLRAASIFVKDGVVHAHIGVKELRSLILQDDLQSSIEVPAVDKSQYIGCKMAVVMFIYFLATNYYWILVEGLYLHSLIFVAFFSDTKYLWGFTLIGWGFPAAFVTVWAVARATLADARCWELSAGDIKWIYQAPILAAIGLNFILFLNTVRVLATKIWETNVVGHDTRKQYRKLAKSTLVLVLVFGVHYIVFVCLPHSFAGLGWEIRMHCELFFNSFQGFFVSIIYCYCNGEVQSEVKKLWSRWNLSVDWKRTPPCGGHRYGSVLTTLTHSTSSQSQMAASTRMGLISGKAPRKASRQPDNHMTLPGYVWSNSEQDCLPQLIHEETKESGGRQGDEIIMEESSRPLEFSTGLEGSKGETEDAL", "length": 561 }, "evidence": [ { "id": "F1SST8", "url": "https://omabrowser.org/oma/group/F1SST8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P49190-1", "protein_name": "Parathyroid hormone 2 receptor", "gene_name": "PTH2R", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGLGASLHVWGWLMLGSCLLARAQLDSDGTITIEEQIVLVLKAKVQCELNITAQLQEGEGNCFPEWDGLICWPRGTVGKISAVPCPPYIYDFNHKGVAFRHCNPNGTWDFMHSLNKTWANYSDCLRFLQPDISIGKQEFFERLYVMYTVGYSISFGSLAVAILIIGYFRRLHCTRNYIHMHLFVSFMLRATSIFVKDRVVHAHIGVKELESLIMQDDPQNSIEATSVDKSQYIGCKIAVVMFIYFLATNYYWILVEGLYLHNLIFVAFFSDTKYLWGFILIGWGFPAAFVAAWAVARATLADARCWELSAGDIKWIYQAPILAAIGLNFILFLNTVRVLATKIWETNAVGHDTRKQYRKLAKSTLVLVLVFGVHYIVFVCLPHSFTGLGWEIRMHCELFFNSFQGFFVSIIYCYCNGEVQAEVKKMWSRWNLSVDWKRTPPCGSRRCGSVLTTVTHSTSSQSQVAASTRMVLISGKAAKIASRQPDSHITLPGYVWSNSEQDCLPHSFHEETKEDSGRQGDDILMEKPSRPMESNPDTEGCQGETEDVL", "length": 550 }, "evidence": [ { "id": "F1SST8", "url": "https://omabrowser.org/oma/group/F1SST8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P70555-1", "protein_name": "Parathyroid hormone 2 receptor", "gene_name": "Pth2r", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPWLEALPYICGWLILRSCLLVGAQLDSDGTITIEEQIVLVMKAKMQCELNITAQFQEGEGNCFPEWDGLICWPRGTAGKTSAMPCPSYVYDFNHKGVAFRHCTPNGTWDFIHGSNKTWANYSDCFLQPDINIGKQEFFENLYILYTVGYSISFGSLAVAILIIGYFRRLHCTRNYIHLHLFVSFMLRAXSIFVKDRVAQAHLGVEALQSLVMQGDLQNFIGGPSVDKSQYVGCKIAVVMFIYFLATNYYWILVEGLYLHNLIFVSFFSDTKYLWGFILIGWGFPAVFVVAWAVARATLADTRCWELSAGDRWIYXXPILAAIGLNFILFLNTVRVLATKIWETNAVGHDMRKQYRKLAKSTLVLVLVFGVHYIVFICQPHSFSGLWWEIRMHCELFFNSFQGFFVSIVYCYCNGEVQAEVKKTWTRWNLSIDWKKAPPCGGHRYGSVLTTVTHSTSSQSQMGPSTRLVLISSKPAKTACRQIDSHVTLPGYVWSSSEQDCQPQSTPEETKKGHGRQEDDSPVGESSRPVAFTIDTEGCKGESHPI", "length": 546 }, "evidence": [ { "id": "F1SST8", "url": "https://omabrowser.org/oma/group/F1SST8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91V95-1", "protein_name": "Parathyroid hormone 2 receptor", "gene_name": "Pth2r", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAWLETFTYICGWLILSSCLLVRAQLDSDGTITIEEQIVLVMKAKMQCELNITAQLQEGEGNCFPEWDGIICWPRGTVGKMSAVPCPPYVYDFNHKGVAFRHCTPNGTWDSIHGSNKTWANYSDCFLQPDINIGKQEFFESLYILYTVGYSISFGSLAVAILIIGYFRRLHCTRNYIHLHLFVSFMLRAMSIFVKDRVAQAHLGVEALQSLVMQGDLQNFIGGPSVDKSQYVGCKIAVVMFIYFLATNYYWILVEGLYLHNLIFVSFFSDTKYLWGFISIGWGFPAVFVVAWAVARATLADTRCWELSAGDRWIYQAPILAAIGLNFILFLNTVRVLATKIWETNAVGHDMRKQYRKLAKSTLVLVLVFGVHYIVFVCQPHSFSGLWWEIRMHCELFFNSFQGFFVSIVYCYCNGEVQAEVKKMWTRWNLSIDWKRAPPCGGQRYGSVLTTVTHSTSSQSQMGASTRLVLISGKPTKNACRQIDSHVTLPGYVWSSSEQDCQTHSPPEETKEGHRRQGDDSPVMESSRPVAFTLDTEGCKGETHPI", "length": 546 }, "evidence": [ { "id": "F1SST8", "url": "https://omabrowser.org/oma/group/F1SST8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell surface receptor signaling pathway", "id": "GO:0007166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007166", "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ], "pmid": "" }, { "name": "adenylate cyclase-modulating G protein-coupled receptor signaling pathway", "id": "GO:0007188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007188", "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ], "pmid": "" }, { "name": "positive regulation of cold-induced thermogenesis", "id": "GO:0120162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120162", "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "peptide hormone binding", "id": "GO:0017046", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017046", "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ], "pmid": "" }, { "name": "G protein-coupled peptide receptor activity", "id": "GO:0008528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008528", "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ], "pmid": "" }, { "name": "parathyroid hormone receptor activity", "id": "GO:0004991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004991", "evidence": [ { "database": "UniProtKB", "id": "F1SST8", "url": "https://www.uniprot.org/uniprotkb/F1SST8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SST8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 550, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SST8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SST8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SST8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SST8" }, { "id": "PS50227", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50227" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 2 profile 1", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 129, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SST8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SST8" }, { "id": "PS50261", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50261" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 2 profile 2", "eco_id": "ECO_0000259", "start_pos": 144, "end_pos": 417, "start_aa": "Leu", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 116, "end_pos": 118 }, { "start_pos": 121, "end_pos": 123 }, { "start_pos": 432, "end_pos": 434 }, { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSW5-1", "uniprot_ac": "F1SSW5", "uniprot_id": "F1SSW5_PIG", "mass": { "chemical_mass": 334434.0, "monoisotopic_mass": 334434.0 }, "refseq": {}, "gene_names": [ { "name": "MGA", "type": "recommended", "evidence": [ { "id": "F1SSW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ] } ], "protein_names": [ { "name": "MAX gene-associated protein", "type": "recommended", "evidence": [ { "id": "F1SSW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Functions as a dual-specificity transcription factor, regulating the expression of both MAX-network and T-box family target genes. Functions as a repressor or an activator. Binds to 5'-AATTTCACACCTAGGTGTGAAATT-3' core sequence and seems to regulate MYC-MAX target genes. Suppresses transcriptional activation by MYC and inhibits MYC-dependent cell transformation. Function activated by heterodimerization with MAX. This heterodimerization serves the dual function of both generating an E-box-binding heterodimer and simultaneously blocking interaction of a corepressor.", "evidence": [ { "database": "UniProtKB", "id": "F1SSW6", "url": "https://www.uniprot.org/uniprotkb/F1SSW6#function" }, { "database": "UniProtKB", "id": "ARBA00059348", "url": "https://www.uniprot.org/uniprotkb/ARBA00059348#function" }, { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MGA", "url": "https://www.uniprot.org/uniprotkb/F1SSW5", "locus": { "chromosome": "1", "start_pos": 129594795, "end_pos": 129697408, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004739", "url": "https://www.ensembl.org/id/ENSSSCG00000004739" } ] } } ], "crossref": [ { "id": "ENSSSCG00000004739", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004739", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd18911", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18911", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20195", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20195", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008967", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008967", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037935", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037935", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11267:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11267:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00907", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00907", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8953750", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8953750", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSW6", "url": "https://www.uniprot.org/uniprotkb/F1SSW6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSW6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEKQQIILANQDGGTVAGAAPTFFVILKQPGNGKTDQGILVTNRDACALASSVSSPGKSKGKICLPADCTVGGITVTLDNNSMWNEFYHRSTEMILTKQGRRMFPYCRYWITGLDANMKYILVMDISPVDNHRYKWNGRWWEPSGKAEPHVLGRVFIHPESPSTGHYWMHQPVSFYKLKLTNNTLDQEGHIILHSMHRYLPRLHLVPAEKATEVIQLNGPGVHTFTFPQTEFFAVTAYQNIQITQLKIDYNPFAKGFRDDGLNNKPQRDGKQKINSDQEGNGVPGSPGQRARLTEGEGSEIQLTDSDPLSRGHETSGKGLEKPSLSIKRDFLGFMDIDSSLGEAPQLKQEVSESLVANSFEDGSHVTSPLNPNGNFNVVIKEEPLDDYEYEPGECSEGTVKQEETDEETDVYSNSDDDPILEKQLKRHNKVDNIEADHLSSKWLPSSPSGVAKAKMFKLDAGKMPVVYLEPCAVTKSTVKISELPDNMLSTSRKDRSSVLTELDYLPTYIENSNETGFCLGKESENGLRRHSPDLRVVQKYSSLKEPQWKYSDTSDNTEKILDGSKSSAGDSFVGKEDLGRKRTTVLKISAASKNANANQNAPPNGPGKRGRPRKLKLSKAGRPPKNTGKSLPSTKNTSVGPGSTFPDVKPDLEDVDGVLFVSFESKEALDIHAVDGTTEESSSLQASTINDPGCRARISQLEKELIEDLKALRHKQVIHPSLQEVGLKLNSVDPTMSIDLKYLGVQLPLAPATSFPFWNLTGTNPASPDAGFPFVSRTGKTNDFTKIKGWRGKFHGASASRNEGGNSEGSLKNRSAFCSDKLDEYLENEGKLMETSMGFSSNAPTSPVVYQLPTKSTSYVRTLDSVLKKQSTISPSTSYSLKPHSVPPASRKAKSQNKQATFSGRTKSSYKSILPYPVSPKQKHTHMISGDKVTKNASNNISENQVNNLVVPALDENTFPKQISLRQAHQQQQQQQQGSRPPGLSKSQVKLMDLEDCALWEGKPRTYITEERADVSLTTLLTAQASLKTKPIHTIIRKRAPPCNNDFCRLGCICSSLALEKRQPAHCRRPDCMFGCTCLKRKVVLVKGGSKTKHFQRKAAHREPVFYDNMGEEQREEEEGVKEEEEQLKEKKKRKKLEYTICETEPEQPVRHYPLWVKVEGEVDPEPVYIPTPSVIEPMKPLLLPQPEVLSTAVKGKVLTGIKPARAYTPKPNPVIREEDKDPVYLYFESMMTCARVRVYERKKEEQRQPSPSPSPSFQQQGSCHSSPENCSVKEPDSEQQPLKPITCDLEDDPDKLQEKNQKSSCNEGESSSTSYVHQRSPGGPTKLIEIISDCNWEEDRNKILSILSQHINSNMPQSLKVGSFIIELASQRKSRGEKNPPVYSSRVKISMPSCQDQDDMAEKSGSETPDGPLSPGKMDDISPVQTDALDSVRERLHGGKGLPFYAGLSPAGKLVAYKRKPSSSTSGLIQVASNAKVAASRKPRTLLPSTSNSKATSSSGTTTNRPGKNLKAFVPAKRPIAARPSPGGVFTQFVMSKVGALQQKIPGVSTPQPLTGPQKFSIRPSPVMVVTPVVSSEPVQVCSPVTAAVTTTTPQVFLENVTTVTPMTAISDVGTKETTYSSGATTTGVVEVSETNTSTLVTPTQSTATVNLIKTTGITTPVASVAFPKSLVASPPTITLPVASTASTSIVVVTTAASSSMVTTPTSSLSSVPIILSGIDGSPPVSQRPENAPQIPVATPQVSPNAVKRTGPRLLLIPVQQGSPTLRPVPNTQVQGHRMVLQPVRSPSGMNLFRHPNGQIVQLLPLHQLRGSNSQPNLQPVMFRNPGSVMGIRLPTPSKPSETPPSSTSSSTFPVMNPVIQAVGSSPTMNVITQAPSLLSSGPSFVSQSGTLTLRISPPEPQSFASKTSSETKITYSSGGQPVGTASLIPLQSGSFALLQLPGQKPVPSSILQHVASLQMKRESQNADQKDETSFLKREQETKKALQSGREAVGSEANMIKQNSGASVSEENLTDSLEDGGGPLDEESLAEEGPATVKPSEHDYKDVNEEYGIRNHNSSKEKLTVLEVNTISERAGNITVQSVSNVQLKKLGDVKVEQQKALDHPEEKSDEFPVISKEESKLELSGSKVVEQQSNQQPEAKEKGCGDSLEKETIRERWKKHLKVPLTQKCVRTSQEYKKETNERLIKETKTCQESSDVFQQEQGISDLLGKSETTENARVLKSECDSWSRISSPAAFSIVPRRASKGNRGEGRFQGHLLLSGERIKPKQEKKGGRSSADFPVLDLEEDDEEDENEKTDDSIDEIVDVVSDYQSEEVDDVEKNNCVEYIEDDEEQVDIETVEELPEEINVAHMKTTAAHTQTFKQSCRTHNSADDKAAERSRKAPSVPLKIKPDYWSEKLQKEAEAFAYYRRTHTANERRRRGEMRDLFEKLKITLGLLHSSKVSKSLILTRAFSEIQGLTDQADKLIGQKNLLTRKRNILIRKVSSLSGKTEEVVLKKLEYIYAKQQALEAQKRKKKMGSDEFDVSPRTSKQQEGSSASSVDLGQMFINSRKGKPLILSRKRDQATENTSPSNTPHTSANIVMTPQGQLLTLKGPLFSGPVVTVSPAVLEADLKPQVTSSAVAQSENDDLFMMPRIVNVTSLATEGGLVDMGGSKYPHEVPDGKPPDHLKNPVRNEDNSCEDLGRISSRGNHRDGRMALGPTQVYLSNKDSDFPQIVDVSSMPEAQEFLPKKIAGDMRGTQHKWKESESRRERLKPKESAFHKLKMKDLKDSSIEMELRKVASAIEEAALDPSELLTNMEDEDDTDETLTSLLNEIAFLNQQLNDDSVSLAELPSSMDTEFPGDARQAFISKLPPGNRATFQVGHLGTGLKELPDVQGESDSVSPLLLHLEDDDFSENEKQLAEPASEPDVLKIVIDSEIKDSLLSHRKACDGGKSTSGVPTEPESVSSPPVLHMKAGLENSSTDTLWRPMPKLAPLGLKVANPSSDSDGQSLKVMPCLAPVAAKVGSVGHKMNLTGNDQECRESKVMPTLAPVVAKLGNSGASPSSTGK", "length": 3053, "header": "tr|F1SSW5-1|F1SSW5_PIG Isoform 1 of MAX gene-associated protein OS=Sus scrofa OX=9823 GN=MGA PE=4 SV=4 CANONICAL=F1SSW5-1" }, "isoforms": [ { "isoform_ac": "F1SSW5-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW5/entry#F1SSW5-1", "sequence": { "sequence": "MEEKQQIILANQDGGTVAGAAPTFFVILKQPGNGKTDQGILVTNRDACALASSVSSPGKSKGKICLPADCTVGGITVTLDNNSMWNEFYHRSTEMILTKQGRRMFPYCRYWITGLDANMKYILVMDISPVDNHRYKWNGRWWEPSGKAEPHVLGRVFIHPESPSTGHYWMHQPVSFYKLKLTNNTLDQEGHIILHSMHRYLPRLHLVPAEKATEVIQLNGPGVHTFTFPQTEFFAVTAYQNIQITQLKIDYNPFAKGFRDDGLNNKPQRDGKQKINSDQEGNGVPGSPGQRARLTEGEGSEIQLTDSDPLSRGHETSGKGLEKPSLSIKRDFLGFMDIDSSLGEAPQLKQEVSESLVANSFEDGSHVTSPLNPNGNFNVVIKEEPLDDYEYEPGECSEGTVKQEETDEETDVYSNSDDDPILEKQLKRHNKVDNIEADHLSSKWLPSSPSGVAKAKMFKLDAGKMPVVYLEPCAVTKSTVKISELPDNMLSTSRKDRSSVLTELDYLPTYIENSNETGFCLGKESENGLRRHSPDLRVVQKYSSLKEPQWKYSDTSDNTEKILDGSKSSAGDSFVGKEDLGRKRTTVLKISAASKNANANQNAPPNGPGKRGRPRKLKLSKAGRPPKNTGKSLPSTKNTSVGPGSTFPDVKPDLEDVDGVLFVSFESKEALDIHAVDGTTEESSSLQASTINDPGCRARISQLEKELIEDLKALRHKQVIHPSLQEVGLKLNSVDPTMSIDLKYLGVQLPLAPATSFPFWNLTGTNPASPDAGFPFVSRTGKTNDFTKIKGWRGKFHGASASRNEGGNSEGSLKNRSAFCSDKLDEYLENEGKLMETSMGFSSNAPTSPVVYQLPTKSTSYVRTLDSVLKKQSTISPSTSYSLKPHSVPPASRKAKSQNKQATFSGRTKSSYKSILPYPVSPKQKHTHMISGDKVTKNASNNISENQVNNLVVPALDENTFPKQISLRQAHQQQQQQQQGSRPPGLSKSQVKLMDLEDCALWEGKPRTYITEERADVSLTTLLTAQASLKTKPIHTIIRKRAPPCNNDFCRLGCICSSLALEKRQPAHCRRPDCMFGCTCLKRKVVLVKGGSKTKHFQRKAAHREPVFYDNMGEEQREEEEGVKEEEEQLKEKKKRKKLEYTICETEPEQPVRHYPLWVKVEGEVDPEPVYIPTPSVIEPMKPLLLPQPEVLSTAVKGKVLTGIKPARAYTPKPNPVIREEDKDPVYLYFESMMTCARVRVYERKKEEQRQPSPSPSPSFQQQGSCHSSPENCSVKEPDSEQQPLKPITCDLEDDPDKLQEKNQKSSCNEGESSSTSYVHQRSPGGPTKLIEIISDCNWEEDRNKILSILSQHINSNMPQSLKVGSFIIELASQRKSRGEKNPPVYSSRVKISMPSCQDQDDMAEKSGSETPDGPLSPGKMDDISPVQTDALDSVRERLHGGKGLPFYAGLSPAGKLVAYKRKPSSSTSGLIQVASNAKVAASRKPRTLLPSTSNSKATSSSGTTTNRPGKNLKAFVPAKRPIAARPSPGGVFTQFVMSKVGALQQKIPGVSTPQPLTGPQKFSIRPSPVMVVTPVVSSEPVQVCSPVTAAVTTTTPQVFLENVTTVTPMTAISDVGTKETTYSSGATTTGVVEVSETNTSTLVTPTQSTATVNLIKTTGITTPVASVAFPKSLVASPPTITLPVASTASTSIVVVTTAASSSMVTTPTSSLSSVPIILSGIDGSPPVSQRPENAPQIPVATPQVSPNAVKRTGPRLLLIPVQQGSPTLRPVPNTQVQGHRMVLQPVRSPSGMNLFRHPNGQIVQLLPLHQLRGSNSQPNLQPVMFRNPGSVMGIRLPTPSKPSETPPSSTSSSTFPVMNPVIQAVGSSPTMNVITQAPSLLSSGPSFVSQSGTLTLRISPPEPQSFASKTSSETKITYSSGGQPVGTASLIPLQSGSFALLQLPGQKPVPSSILQHVASLQMKRESQNADQKDETSFLKREQETKKALQSGREAVGSEANMIKQNSGASVSEENLTDSLEDGGGPLDEESLAEEGPATVKPSEHDYKDVNEEYGIRNHNSSKEKLTVLEVNTISERAGNITVQSVSNVQLKKLGDVKVEQQKALDHPEEKSDEFPVISKEESKLELSGSKVVEQQSNQQPEAKEKGCGDSLEKETIRERWKKHLKVPLTQKCVRTSQEYKKETNERLIKETKTCQESSDVFQQEQGISDLLGKSETTENARVLKSECDSWSRISSPAAFSIVPRRASKGNRGEGRFQGHLLLSGERIKPKQEKKGGRSSADFPVLDLEEDDEEDENEKTDDSIDEIVDVVSDYQSEEVDDVEKNNCVEYIEDDEEQVDIETVEELPEEINVAHMKTTAAHTQTFKQSCRTHNSADDKAAERSRKAPSVPLKIKPDYWSEKLQKEAEAFAYYRRTHTANERRRRGEMRDLFEKLKITLGLLHSSKVSKSLILTRAFSEIQGLTDQADKLIGQKNLLTRKRNILIRKVSSLSGKTEEVVLKKLEYIYAKQQALEAQKRKKKMGSDEFDVSPRTSKQQEGSSASSVDLGQMFINSRKGKPLILSRKRDQATENTSPSNTPHTSANIVMTPQGQLLTLKGPLFSGPVVTVSPAVLEADLKPQVTSSAVAQSENDDLFMMPRIVNVTSLATEGGLVDMGGSKYPHEVPDGKPPDHLKNPVRNEDNSCEDLGRISSRGNHRDGRMALGPTQVYLSNKDSDFPQIVDVSSMPEAQEFLPKKIAGDMRGTQHKWKESESRRERLKPKESAFHKLKMKDLKDSSIEMELRKVASAIEEAALDPSELLTNMEDEDDTDETLTSLLNEIAFLNQQLNDDSVSLAELPSSMDTEFPGDARQAFISKLPPGNRATFQVGHLGTGLKELPDVQGESDSVSPLLLHLEDDDFSENEKQLAEPASEPDVLKIVIDSEIKDSLLSHRKACDGGKSTSGVPTEPESVSSPPVLHMKAGLENSSTDTLWRPMPKLAPLGLKVANPSSDSDGQSLKVMPCLAPVAAKVGSVGHKMNLTGNDQECRESKVMPTLAPVVAKLGNSGASPSSTGK", "length": 3053, "header": "tr|F1SSW5-1|F1SSW5_PIG Isoform 1 of MAX gene-associated protein OS=Sus scrofa OX=9823 GN=MGA PE=4 SV=4 CANONICAL=F1SSW5-1" }, "locus": { "chromosome": "1", "start_pos": 129688139, "end_pos": 129594993, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005236.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005236.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005110.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005110.4" } ] } }, { "isoform_ac": "F1SSW6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSW5/entry#F1SSW6-1", "sequence": { "sequence": "MEEKQQIILANQDGGTVAGAAPTFFVILKQPGNGKTDQGILVTNRDACALASSVSSPGKSKGKICLPADCTVGGITVTLDNNSMWNEFYHRSTEMILTKQGRRMFPYCRYWITGLDANMKYILVMDISPVDNHRYKWNGRWWEPSGKAEPHVLGRVFIHPESPSTGHYWMHQPVSFYKLKLTNNTLDQEGHIILHSMHRYLPRLHLVPAEKATEVIQLNGPGVHTFTFPQTEFFAVTAYQNIQITQLKIDYNPFAKGFRDDGLNNKPQRDGKQKINSDQEGNGVPGSPGQRARLTEGEGSEIQLTDSDPLSRGHETSGKGLEKPSLSIKRDFLGFMDIDSSLGEAPQLKQEVSESLVANSFEDGSHVTSPLNPNGNFNVVIKEEPLDDYEYEPGECSEGTVKQEETDEETDVYSNSDDDPILEKQLKRHNKVDNIEADHLSSKWLPSSPSGVAKAKMFKLDAGKMPVVYLEPCAVTKSTVKISELPDNMLSTSRKDRSSVLTELDYLPTYIENSNETGFCLGKESENGLRRHSPDLRVVQKYSSLKEPQWKYSDTSDNTEKILDGSKSSAGDSFVGKEDLGRKRTTVLKISAASKNANANQNAPPNGPGKRGRPRKLKLSKAGRPPKNTGKSLPSTKNTSVGPGSTFPDVKPDLEDVDGVLFVSFESKEALDIHAVDGTTEESSSLQASTINDPGCRARISQLEKELIEDLKALRHKQVIHPSLQEVGLKLNSVDPTMSIDLKYLGVQLPLAPATSFPFWNLTGTNPASPDAGFPFVSRTGKTNDFTKIKGWRGKFHGASASRNEGGNSEGSLKNRSAFCSDKLDEYLENEGKLMETSMGFSSNAPTSPVVYQLPTKSTSYVRTLDSVLKKQSTISPSTSYSLKPHSVPPASRKAKSQNKQATFSGRTKSSYKSILPYPVSPKQKHTHMISGDKVTKNASNNISENQVNNLVVPALDENTFPKQISLRQAHQQQQQQQQGSRPPGLSKSQVKLMDLEDCALWEGKPRTYITEERADVSLTTLLTAQASLKTKPIHTIIRKRAPPCNNDFCRLGCICSSLALEKRQPAHCRRPDCMFGCTCLKRKVVLVKGGSKTKHFQRKAAHREPVFYDNMGEEQREEEEGVKEEEEQLKEKKKRKKLEYTICETEPEQPVRHYPLWVKVEGEVDPEPVYIPTPSVIEPMKPLLLPQPEVLSTAVKGKVLTGIKPARAYTPKPNPVIREEDKDPVYLYFESMMTCARVRVYERKKEEQRQPSPSPSPSFQQQGSCHSSPENCSVKEPDSEQQPLKPITCDLEDDPDKLQEKNQKSSCNEGESSSTSYVHQRSPGGPTKLIEIISDCNWEEDRNKILSILSQHINSNMPQSLKVGSFIIELASQRKSRGEKNPPVYSSRVKISMPSCQDQDDMAEKSGSETPDGPLSPGKMDDISPVQTDALDSVRERLHGGKGLPFYAGLSPAGKLVAYKRKPSSSTSGLIQVASNAKVAASRKPRTLLPSTSNSKATSSSGTTTNRPGKNLKAFVPAKRPIENAPQIPVATPQVSPNAVKRTGPRLLLIPVQQGSPTLRPVPNTQVQGHRMVLQPVRSPSGMNLFRHPNGQIVQLLPLHQLRGSNSQPNLQPVMFRNPGSVMGIRLPTPSKPSETPPSSTSSSTFPVMNPVIQAVGSSPTMNVITQAPSLLSSGPSFVSQSGTLTLRISPPEPQSFASKTSSETKITYSSGGQPVGTASLIPLQSGSFALLQLPGQKPVPSSILQHVASLQMKRESQNADQKDETSFLKREQETKKALQSGREAVGSEANMIKQNSGASVSEENLTDSLEDGGGPLDEESLAEEGPATVKPSEHDYKDVNEEYGIRNHNSSKEKLTVLEVNTISERAGNITVQSVSNVQLKKLGDVKVEQQKALDHPEEKSDEFPVISKEESKLELSGSKVVEQQSNQQPEAKEKGCGDSLEKETIRERWKKHLKVPLTQKCVRTSQEYKKETNERLIKETKTCQESSDVFQQEQGISDLLGKSETTENARVLKSECDSWSRISSPAAFSIVPRRASKGNRGEGRFQGHLLLSGERIKPKQEKKGGRSSADFPVLDLEEDDEEDENEKTDDSIDEIVDVVSDYQSEEVDDVEKNNCVEYIEDDEEQVDIETVEELPEEINVAHMKTTAAHTQTFKQSCRTHNSADDKAAERSRKAPSVPLKIKPDYWSEKLQKEAEAFAYYRRTHTANERRRRGEMRDLFEKLKITLGLLHSSKVSKSLILTRAFSEIQGLTDQADKLIGQKNLLTRKRNILIRKVSSLSGKTEEVVLKKLEYIYAKQQALEAQKRKKKMGSDEFDVSPRTSKQQEGSSASSVDLGQMFINSRKGKPLILSRKRDQATENTSPSNTPHTSANIVMTPQGQLLTLKGPLFSGPVVTVSPAVLEADLKPQVTSSAVAQSENDDLFMMPRIVNVTSLATEGGLVDMGGSKYPHEVPDGKPPDHLKNPVRNEDNSCEDLGRISSRGNHRDGRMALGPTQVYLSNKDSDFPQIVDVSSMPEAQEFLPKKIAGDMRGTQHKWKESESRRERLKPKESAFHKLKMKDLKDSSIEMELRKVASAIEEAALDPSELLTNMEDEDDTDETLTSLLNEIAFLNQQLNDDSVSLAELPSSMDTEFPGDARQAFISKLPPGNRATFQVGHLGTGLKELPDVQGESDSVSPLLLHLEDDDFSENEKQLAEPASEPDVLKIVIDSEIKDSLLSHRKACDGGKSTSGVPTEPESVSSPPVLHMKAGLENSSTDTLWRPMPKLAPLGLKVANPSSDSDGQSLKVMPCLAPVAAKVGSVGHKMNLTGNDQECRESKVMPTLAPVVAKLGNSGASPSSTGK", "length": 2844, "header": "tr|F1SSW6-1|F1SSW6_PIG Computationally mapped isoform of MAX gene-associated protein OS=Sus scrofa OX=9823 GN=MGA PE=4 SV=4 CANONICAL=F1SSW5-1" }, "locus": { "chromosome": "1", "start_pos": 129688139, "end_pos": 129594993, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005235.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005235.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005109.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005109.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8953750", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8953750", "resource": "Reactome", "description": "Transcriptional Regulation by E2F6" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell fate specification", "id": "GO:0001708", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001708", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" }, { "name": "MLL1 complex", "id": "GO:0071339", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071339", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1SSW5", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1272, "end_pos": 1274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1603, "end_pos": 1605, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1639, "end_pos": 1641, "annotation": "n_glycosylation_sequon" }, { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2015, "end_pos": 2017, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2060, "end_pos": 2062, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2080, "end_pos": 2082, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2571, "end_pos": 2573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2641, "end_pos": 2643, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2964, "end_pos": 2966, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3017, "end_pos": 3019, "annotation": "n_glycosylation_sequon" }, { "start_pos": 515, "end_pos": 517, "annotation": "n_glycosylation_sequon" }, { "start_pos": 638, "end_pos": 640, "annotation": "n_glycosylation_sequon" }, { "start_pos": 761, "end_pos": 763, "annotation": "n_glycosylation_sequon" }, { "start_pos": 815, "end_pos": 817, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" }, { "start_pos": 938, "end_pos": 940, "annotation": "n_glycosylation_sequon" }, { "start_pos": 942, "end_pos": 944, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 2411, "end_pos": 2462, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSW5" }, { "id": "PS50252", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50252" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "T-box", "eco_id": "ECO_0000259", "start_pos": 79, "end_pos": 260, "start_aa": "Leu", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1272, "end_pos": 1274 }, { "start_pos": 1603, "end_pos": 1605 }, { "start_pos": 1639, "end_pos": 1641 }, { "start_pos": 183, "end_pos": 185 }, { "start_pos": 2015, "end_pos": 2017 }, { "start_pos": 2060, "end_pos": 2062 }, { "start_pos": 2080, "end_pos": 2082 }, { "start_pos": 2571, "end_pos": 2573 }, { "start_pos": 2641, "end_pos": 2643 }, { "start_pos": 2964, "end_pos": 2966 }, { "start_pos": 3017, "end_pos": 3019 }, { "start_pos": 515, "end_pos": 517 }, { "start_pos": 638, "end_pos": 640 }, { "start_pos": 761, "end_pos": 763 }, { "start_pos": 815, "end_pos": 817 }, { "start_pos": 81, "end_pos": 83 }, { "start_pos": 938, "end_pos": 940 }, { "start_pos": 942, "end_pos": 944 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSX2-1", "uniprot_ac": "F1SSX2", "uniprot_id": "F1SSX2_PIG", "mass": { "chemical_mass": 91196.0, "monoisotopic_mass": 91196.0 }, "refseq": {}, "gene_names": [ { "name": "PLA2G4D", "type": "recommended", "evidence": [ { "id": "F1SSX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ] } ], "protein_names": [ { "name": "Phospholipase A2", "type": "recommended", "evidence": [ { "id": "F1SSX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX2/entry#names_and_taxonomy" } ] }, { "name": "3.1.1.4", "type": "synonym", "evidence": [ { "id": "F1SSX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX2/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLA2G4D", "url": "https://www.uniprot.org/uniprotkb/F1SSX2", "locus": { "chromosome": "1", "start_pos": 129271028, "end_pos": 129247159, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000004733", "url": "https://www.ensembl.org/id/ENSSSCG00000004733" } ] } } ], "crossref": [ { "id": "F1SSX2", "url": "https://alphafold.ebi.ac.uk/entry/F1SSX2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000004733", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000004733", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04036", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04036", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041847", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041847", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10728", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10728", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10728:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10728:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01735", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01735", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18695", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18695", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1482788", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482788", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482801", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482801", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482839", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482922", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482922", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1482925", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482925", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1483115", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483115", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1483166", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483166", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "15177", "url": "https://www.rhea-db.org/rhea/15177", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "15801", "url": "https://www.rhea-db.org/rhea/15801", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "36231", "url": "https://www.rhea-db.org/rhea/36231", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40427", "url": "https://www.rhea-db.org/rhea/40427", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40451", "url": "https://www.rhea-db.org/rhea/40451", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40519", "url": "https://www.rhea-db.org/rhea/40519", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "40811", "url": "https://www.rhea-db.org/rhea/40811", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41067", "url": "https://www.rhea-db.org/rhea/41067", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41071", "url": "https://www.rhea-db.org/rhea/41071", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41075", "url": "https://www.rhea-db.org/rhea/41075", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41087", "url": "https://www.rhea-db.org/rhea/41087", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41099", "url": "https://www.rhea-db.org/rhea/41099", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41123", "url": "https://www.rhea-db.org/rhea/41123", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41271", "url": "https://www.rhea-db.org/rhea/41271", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "41307", "url": "https://www.rhea-db.org/rhea/41307", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53688", "url": "https://www.rhea-db.org/rhea/53688", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53692", "url": "https://www.rhea-db.org/rhea/53692", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53696", "url": "https://www.rhea-db.org/rhea/53696", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53700", "url": "https://www.rhea-db.org/rhea/53700", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "53704", "url": "https://www.rhea-db.org/rhea/53704", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSX2-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERLKPRGPPGHPHQGEASTCWRLTVRILEARGLGWADLLSEADPYVTLQLPTAAGTKFKTKTVTNCSHPVWNETFTFLIQSQVKNVLELSIYDEDPVTEDDACFKVLYDISEVLPGTLLRKTFSQHPQRGEELDVEFLMEKTSDCPETLITNNVLVARELSRLDVRLDAMGSTAMATDQDKLELELVLKGSYEDTQTSVLGTASAFCFHYMAAQEAELSGCLRSSKSNGWNSSNSAEHLTVALRALALGKEVTVDVPATNAPGVKLHLKAESCPKELVVRLGFDLCAEEKAFLSRRKQVVAKALKQVLQLDGDLQEDEIPVVGIMATGGGARAMTSLYGHLLALQKLGLLDCVTYFSGISGSTWTMAHLYGDPEWSQKDLKEPIRHTREHLTKSKLEAFSPERLASYLQELEQRAEQGQPTTFVDLWGLVLEFMLHGQVMDQKLSGQRAALERGQNPLPLYLSLNVKEHNLQTLDFKEWVEFSPYEVGFLKYGAFVPSEFFGSEFFMGRLMKRIPESRVCFLEGIWSNIFSLNLLDAWYDLTSSGDTWKQHIKDKIRSLEESPASSRTSSWLQPGTALAQMFKGFLTDRPLYQHSSNFLRGLQLHQDYCAQKDFSTWADCQPDSSPSQLTPQEPQLCLVDAGYFLNTSCPSMFRPGRRLDLILSFDYSLSSPFEVLQQMELDCRGRGLPFPRVDPSPEEQRQPRECHLFLDPDCPDAPAVLHFPLVNASFKDHSAPGVQRSPAELPAGQVDLTGVTSPYSIFNMTYKEEDFDRLLQLSDYNIRNSQDTILQALRMALKHRAPSDRPPEAQT", "length": 812, "header": "tr|F1SSX2-1|F1SSX2_PIG Isoform 1 of Phospholipase A2 OS=Sus scrofa OX=9823 GN=PLA2G4D PE=4 SV=4 CANONICAL=F1SSX2-1" }, "isoforms": [ { "isoform_ac": "F1SSX2-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX2/entry#F1SSX2-1", "sequence": { "sequence": "MERLKPRGPPGHPHQGEASTCWRLTVRILEARGLGWADLLSEADPYVTLQLPTAAGTKFKTKTVTNCSHPVWNETFTFLIQSQVKNVLELSIYDEDPVTEDDACFKVLYDISEVLPGTLLRKTFSQHPQRGEELDVEFLMEKTSDCPETLITNNVLVARELSRLDVRLDAMGSTAMATDQDKLELELVLKGSYEDTQTSVLGTASAFCFHYMAAQEAELSGCLRSSKSNGWNSSNSAEHLTVALRALALGKEVTVDVPATNAPGVKLHLKAESCPKELVVRLGFDLCAEEKAFLSRRKQVVAKALKQVLQLDGDLQEDEIPVVGIMATGGGARAMTSLYGHLLALQKLGLLDCVTYFSGISGSTWTMAHLYGDPEWSQKDLKEPIRHTREHLTKSKLEAFSPERLASYLQELEQRAEQGQPTTFVDLWGLVLEFMLHGQVMDQKLSGQRAALERGQNPLPLYLSLNVKEHNLQTLDFKEWVEFSPYEVGFLKYGAFVPSEFFGSEFFMGRLMKRIPESRVCFLEGIWSNIFSLNLLDAWYDLTSSGDTWKQHIKDKIRSLEESPASSRTSSWLQPGTALAQMFKGFLTDRPLYQHSSNFLRGLQLHQDYCAQKDFSTWADCQPDSSPSQLTPQEPQLCLVDAGYFLNTSCPSMFRPGRRLDLILSFDYSLSSPFEVLQQMELDCRGRGLPFPRVDPSPEEQRQPRECHLFLDPDCPDAPAVLHFPLVNASFKDHSAPGVQRSPAELPAGQVDLTGVTSPYSIFNMTYKEEDFDRLLQLSDYNIRNSQDTILQALRMALKHRAPSDRPPEAQT", "length": 812, "header": "tr|F1SSX2-1|F1SSX2_PIG Isoform 1 of Phospholipase A2 OS=Sus scrofa OX=9823 GN=PLA2G4D PE=4 SV=4 CANONICAL=F1SSX2-1" }, "locus": { "chromosome": "1", "start_pos": 129270024, "end_pos": 129247255, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005229.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005229.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005103.4", "url": "https://www.ensembl.org/id/ENSSSCP00000005103.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1482788", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482788", "resource": "Reactome", "description": "Acyl chain remodelling of PC" }, { "id": "R-SSC-1482801", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482801", "resource": "Reactome", "description": "Acyl chain remodelling of PS" }, { "id": "R-SSC-1482839", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482839", "resource": "Reactome", "description": "Acyl chain remodelling of PE" }, { "id": "R-SSC-1482922", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482922", "resource": "Reactome", "description": "Acyl chain remodelling of PI" }, { "id": "R-SSC-1482925", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482925", "resource": "Reactome", "description": "Acyl chain remodelling of PG" }, { "id": "R-SSC-1483115", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483115", "resource": "Reactome", "description": "Hydrolysis of LPC" }, { "id": "R-SSC-1483166", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483166", "resource": "Reactome", "description": "Synthesis of PA" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" }, { "name": "phosphatidylcholine lysophospholipase activity", "id": "GO:0004622", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004622", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" }, { "name": "phospholipase A2 activity", "id": "GO:0004623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004623", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" }, { "name": "calcium-dependent phospholipid binding", "id": "GO:0005544", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005544", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "glycerophospholipid catabolic process", "id": "GO:0046475", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046475", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" }, { "name": "leukotriene biosynthetic process", "id": "GO:0019370", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019370", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" }, { "name": "glycerol metabolic process", "id": "GO:0006071", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006071", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" }, { "name": "prostaglandin biosynthetic process", "id": "GO:0001516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001516", "evidence": [ { "database": "UniProtKB", "id": "F1SSX2", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" }, { "start_pos": 647, "end_pos": 649, "annotation": "n_glycosylation_sequon" }, { "start_pos": 66, "end_pos": 68, "annotation": "n_glycosylation_sequon" }, { "start_pos": 728, "end_pos": 730, "annotation": "n_glycosylation_sequon" }, { "start_pos": 73, "end_pos": 75, "annotation": "n_glycosylation_sequon" }, { "start_pos": 764, "end_pos": 766, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "15177", "name": "", "equation": "a 1-acyl-sn-glycero-3-phosphocholine + H2O = sn-glycerol 3-phosphocholine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15177", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15177" } ] }, { "id": "15801", "name": "", "equation": "a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15801", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15801" } ] }, { "id": "36231", "name": "", "equation": "a 1-O-alkyl-2-acyl-sn-glycero-3-phosphocholine + H2O = a 1-O-alkyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "36231", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/36231" } ] }, { "id": "40427", "name": "", "equation": "1-hexadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + H2O = 1-hexadecanoyl-sn-glycero-3-phosphocholine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40427", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40427" } ] }, { "id": "40451", "name": "", "equation": "1-octadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphate + H2O = 1-octadecanoyl-sn-glycero-3-phosphate + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40451", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40451" } ] }, { "id": "40519", "name": "", "equation": "1-octadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + H2O = 1-octadecanoyl-sn-glycero-3-phosphocholine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40519", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40519" } ] }, { "id": "40811", "name": "", "equation": "1-hexadecanoyl-2-(9Z,12Z-octadecadienoyl)-sn-glycero-3-phosphocholine + H2O = (9Z,12Z)-octadecadienoate + 1-hexadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "40811", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/40811" } ] }, { "id": "41067", "name": "", "equation": "1-O-hexadecyl-2-(5Z,8Z,11Z,14Z)-eicosatetraenoyl-sn-glycero-3-phosphocholine + H2O = 1-O-hexadecyl-sn-glycero-3-phosphocholine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41067", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41067" } ] }, { "id": "41071", "name": "", "equation": "1-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-2-hexadecanoyl-sn-glycero-3-phosphocholine + H2O = 1-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + hexadecanoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41071", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41071" } ] }, { "id": "41075", "name": "", "equation": "1,2-di-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + H2O = 1-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41075", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41075" } ] }, { "id": "41087", "name": "", "equation": "1-octadecanoyl-2-(9Z,12Z,15Z-octadecatrienoyl)-sn-glycero-3-phosphocholine + glycerol = 1-(9Z,12Z,15Z-octadecatrienoyl)-glycerol + 1-octadecanoyl-sn-glycero-3-phosphocholine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41087", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41087" } ] }, { "id": "41099", "name": "", "equation": "1-octadecanoyl-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphocholine + glycerol = 1-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-glycerol + 1-octadecanoyl-sn-glycero-3-phosphocholine", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41099", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41099" } ] }, { "id": "41123", "name": "", "equation": "1,2-di-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-sn-glycerol) + H2O = 1-(9Z-octadecenoyl)-sn-glycero-3-phospho-(1'-sn-glycerol) + (9Z)-octadecenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41123", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41123" } ] }, { "id": "41271", "name": "", "equation": "1-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-2-O-hexadecyl-sn-glycero-3-phosphocholine + H2O = 2-O-hexadecyl-sn-glycero-3-phosphocholine + (5Z,8Z,11Z,14Z)-eicosatetraenoate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41271", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41271" } ] }, { "id": "41307", "name": "", "equation": "1-octadecanoyl-2-(9Z,12Z,15Z-octadecatrienoyl)-sn-glycero-3-phosphocholine + H2O = (9Z,12Z,15Z)-octadecatrienoate + 1-octadecanoyl-sn-glycero-3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "41307", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/41307" } ] }, { "id": "53688", "name": "", "equation": "2-[(11R)-hydroxy-(5Z,8Z,12E,14Z)-eicosatetraenoyl]-sn-glycero-3-phosphocholine + H2O = (11R)-hydroxy-(5Z,8Z,12E,14Z)-eicosatetraenoate + sn-glycerol 3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53688", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53688" } ] }, { "id": "53692", "name": "", "equation": "2-(prostaglandin E2)-sn-glycero-3-phosphocholine + H2O = prostaglandin E2 + sn-glycerol 3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53692", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53692" } ] }, { "id": "53696", "name": "", "equation": "2-[(15R)-hydroxy-(5Z,8Z,11Z,13E)-eicosatetraenoyl]-sn-glycero-3-phosphocholine + H2O = (15R)-hydroxy-(5Z,8Z,11Z,13E)-eicosatetraenoate + sn-glycerol 3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53696", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53696" } ] }, { "id": "53700", "name": "", "equation": "2-[(15S)-hydroxy-(5Z,8Z,11Z,13E)-eicosatetraenoyl]-sn-glycero-3-phosphocholine + H2O = (15S)-hydroxy-(5Z,8Z,11Z,13E)-eicosatetraenoate + sn-glycerol 3-phosphocholine + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53700", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53700" } ] }, { "id": "53704", "name": "", "equation": "2-(prostaglandin E2)-sn-glycero-3-phosphoethanolamine + H2O = sn-glycero-3-phosphoethanolamine + prostaglandin E2 + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "53704", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/53704" } ] }, { "id": "R-SSC-1482604", "name": "PA is hydrolyzed to 1-acyl LPA by PLA2[1] (OM)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, mitochondrial outer membrane", "input_participant_list": [], "output_participant_list": [ "R-ALL-1524103" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482604", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482604" } ] }, { "id": "R-SSC-1482612", "name": "2-acyl LPC is hydrolyzed to GPCho by PLA2[8]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-975614" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482612", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482612" } ] }, { "id": "R-SSC-1482656", "name": "PA is hydrolysed to 1-acyl LPA by PLA2[1]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-426755" ], "output_participant_list": [ "R-ALL-1500604" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482656", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482656" } ] }, { "id": "R-SSC-1482685", "name": "1-acyl LPC is hydrolyzed to GPCho by PLA2[8]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-1524028" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482685", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482685" } ] }, { "id": "R-SSC-1482745", "name": "PG is hydrolyzed to 1-acyl LPG by PLA2G4B (IM)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial inner membrane, mitochondrial matrix", "input_participant_list": [ "R-ALL-1524042" ], "output_participant_list": [ "R-ALL-1524027", "R-ALL-1524085" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482745", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482745" } ] }, { "id": "R-SSC-1482771", "name": "PS is hydrolyzed to 1-acyl LPS by PLA2[9]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-1500646" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482771", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482771" } ] }, { "id": "R-SSC-1482825", "name": "PI is hydrolyzed to 1-acyl LPI by PLA2[11]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482825", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482825" } ] }, { "id": "R-SSC-1482828", "name": "PE is hydrolyzed to 2-acyl LPE by PLA2[4]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-1500581" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482828", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482828" } ] }, { "id": "R-SSC-1482847", "name": "PG is hydrolysed to 2-acyl LPG by PLA2G4B (IM)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial inner membrane, mitochondrial matrix", "input_participant_list": [], "output_participant_list": [ "R-ALL-1524047" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482847", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482847" } ] }, { "id": "R-SSC-1482856", "name": "PC is hydrolyzed to 1-acyl LPC by PLA2[5]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482856", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482856" } ] }, { "id": "R-SSC-1482862", "name": "PC is hydrolysed to 2-acyl LPC by PLA2[7]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-426925" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482862", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482862" } ] }, { "id": "R-SSC-1482884", "name": "PE is hydrolyzed to 1-acyl LPE by PLA2[2]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482884", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482884" } ] }, { "id": "R-SSC-1482897", "name": "PS is hydrolyzed to 2-acyl LPS by PLA2[10]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482897", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482897" } ] }, { "id": "R-SSC-1482900", "name": "PG is hydrolyzed to 1-acyl LPG by PLA2[1]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482900", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482900" } ] }, { "id": "R-SSC-1482920", "name": "PG is hydrolyzed to 2-acyl LPG by PLA2[14]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-1483256" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482920", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482920" } ] }, { "id": "R-SSC-1482932", "name": "PI is hydrolyzed to 2-acyl LPI by PLA2[13]", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482932", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482932" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1483256", "participant_name": "PG [endoplasmic reticulum membrane]", "crossref": [ { "id": "64716", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-1500581", "participant_name": "PE [endoplasmic reticulum membrane]", "crossref": [ { "id": "57613", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-1500604", "participant_name": "1-acyl LPA [cytosol]", "crossref": [ { "id": "16975", "database": "ChEBI", "url": "" }, { "id": "C00681", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-1500646", "participant_name": "PS [endoplasmic reticulum membrane]", "crossref": [ { "id": "11750", "database": "ChEBI", "url": "" }, { "id": "C02737", "database": "KEGG Gene", "url": "" }, { "id": "L-1-PHOSPHATIDYL-SERINE", "database": "AraCyc", "url": "" }, { "id": "C02737", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-1524027", "participant_name": "1-acyl LPG [mitochondrial inner membrane]", "crossref": [ { "id": "C18126", "database": "COMPOUND", "url": "" }, { "id": "62747", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-1524028", "participant_name": "1-acyl LPC [endoplasmic reticulum membrane]", "crossref": [ { "id": "17504", "database": "ChEBI", "url": "" }, { "id": "C04230", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-1524042", "participant_name": "PG [mitochondrial inner membrane]", "crossref": [ { "id": "64716", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-1524047", "participant_name": "2-acyl LPG [mitochondrial inner membrane]", "crossref": [ { "id": "27923", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-1524085", "participant_name": "LCFA(-) [mitochondrial inner membrane]", "crossref": [ { "id": "C00060", "database": "COMPOUND", "url": "" }, { "id": "57560", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-1524103", "participant_name": "LCFA(-) [mitochondrial outer membrane]", "crossref": [ { "id": "C00060", "database": "COMPOUND", "url": "" }, { "id": "57560", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-426755", "participant_name": "PA [endoplasmic reticulum membrane]", "crossref": [ { "id": "57739", "database": "ChEBI", "url": "" }, { "id": "C00416", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-426925", "participant_name": "PC [endoplasmic reticulum membrane]", "crossref": [ { "id": "57643", "database": "ChEBI", "url": "" }, { "id": "C00157", "database": "COMPOUND", "url": "" } ] }, { "participant_id": "R-ALL-975614", "participant_name": "2-acyl LPC [endoplasmic reticulum membrane]", "crossref": [ { "id": "16728", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSX2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 812, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSX2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSX2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 124, "start_aa": "Lys", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX2" }, { "id": "PS51210", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51210" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PLA2c", "eco_id": "ECO_0000259", "start_pos": 273, "end_pos": 812, "start_aa": "Ser", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 232, "end_pos": 234 }, { "start_pos": 647, "end_pos": 649 }, { "start_pos": 66, "end_pos": 68 }, { "start_pos": 728, "end_pos": 730 }, { "start_pos": 73, "end_pos": 75 }, { "start_pos": 764, "end_pos": 766 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSX6-1", "uniprot_ac": "F1SSX6", "uniprot_id": "F1SSX6_PIG", "mass": { "chemical_mass": 24837.0, "monoisotopic_mass": 24837.0 }, "refseq": { "ac": "XP_020923517", "name": "transcription factor HES-7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923517" }, "gene_names": [ { "name": "HES7", "type": "recommended", "evidence": [ { "id": "F1SSX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ] }, { "name": "HES7", "type": "synonym", "evidence": [ { "id": "XP_020923517", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923517" } ] } ], "protein_names": [ { "name": "Transcription factor HES-7", "type": "recommended", "evidence": [ { "id": "F1SSX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX6/entry#names_and_taxonomy" } ] }, { "name": "Hairy and enhancer of split 7", "type": "synonym", "evidence": [ { "id": "F1SSX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX6/entry#names_and_taxonomy" } ] }, { "name": "bHLH factor Hes7", "type": "synonym", "evidence": [ { "id": "F1SSX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX6/entry#names_and_taxonomy" } ] }, { "name": "transcription factor HES-7", "type": "synonym", "evidence": [ { "id": "XP_020923517", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923517" } ] } ], "function": [ { "annotation": "Transcriptional repressor. Represses transcription from both N box- and E box-containing promoters. May with HES1, cooperatively regulate somite formation in the presomitic mesoderm (PSM). May function as a segmentation clock, which is essential for coordinated somite segmentation.", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6#function" }, { "database": "UniProtKB", "id": "ARBA00057023", "url": "https://www.uniprot.org/uniprotkb/ARBA00057023#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HES7", "url": "https://www.uniprot.org/uniprotkb/F1SSX6", "locus": { "chromosome": "12", "start_pos": 53333907, "end_pos": 53337575, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000060339", "url": "https://www.ensembl.org/id/ENSSSCG00000060339" } ] } } ], "crossref": [ { "id": "F1SSX6", "url": "https://alphafold.ebi.ac.uk/entry/F1SSX6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017982", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017982", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100620745", "url": "https://www.ncbi.nlm.nih.gov/gene/100620745", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620745", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620745", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YMMGFRE", "url": "https://omabrowser.org/oma/group/YMMGFRE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSX6", "url": "https://www.orthodb.org/?gene=F1SSX6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10985", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10985", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020923517", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020923517", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVTRDRAENREGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILEFAVGYLRERSRVEPPGVPRSPAQDAEALASCYLSGFRECLLRLAAFAHDASPAARAQLFSALHGYLRPKPPRPEPVDPRPQAPRPPLDPAAPAPGPALHQRPPVHKGPPSPRCAWSPAPCSPRAGDSGAPAPLTGLLPPPPPPHRQEGAPKAPPPPPPAFWRPWP", "length": 225, "header": "tr|F1SSX6-1|F1SSX6_PIG Isoform 1 of Transcription factor HES-7 OS=Sus scrofa OX=9823 GN=HES7 PE=4 SV=2 CANONICAL=F1SSX6-1" }, "isoforms": [ { "isoform_ac": "F1SSX6-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX6/entry#F1SSX6-1", "sequence": { "sequence": "MVTRDRAENREGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILEFAVGYLRERSRVEPPGVPRSPAQDAEALASCYLSGFRECLLRLAAFAHDASPAARAQLFSALHGYLRPKPPRPEPVDPRPQAPRPPLDPAAPAPGPALHQRPPVHKGPPSPRCAWSPAPCSPRAGDSGAPAPLTGLLPPPPPPHRQEGAPKAPPPPPPAFWRPWP", "length": 225, "header": "tr|F1SSX6-1|F1SSX6_PIG Isoform 1 of Transcription factor HES-7 OS=Sus scrofa OX=9823 GN=HES7 PE=4 SV=2 CANONICAL=F1SSX6-1" }, "locus": { "chromosome": "12", "start_pos": 53337376, "end_pos": 53334904, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000095841.1", "url": "https://www.ensembl.org/id/ENSSSCT00000095841.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000075320.1", "url": "https://www.ensembl.org/id/ENSSSCP00000075320.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620745", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620745", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LCP7-1", "protein_name": "Hes family bHLH transcription factor 7", "gene_name": "Hes7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSFSSTVVFTIRVAVSYTSHAGNWFHSLRLDSLVSGWDRDLSRSSPHSVASPGGTRSSRIRPSLLPLATFPLSPHPFLSLRPSPRLQNLRNPKLEKAEILEFAVGYLRERSRVEPPGTARGVGQRREAGGWGARNARAGEGAGSEVDRGVGERPAVLPDEVNNTRACLSLCLPRCPPLHVHPASCLCLCARLTSVSLRPAPSLNPVGPLPRPPVLPPAAPGVPRSPGQDAEALASCYLSGFRECLLRLAAFAHDASPAARSQLFSALNGYRRPKPPRPEAADPGLPAPRPPLDPASPILGPALHQRPPVHQGPPSPRLAWSPSHCSPRAGDSGAPAPLTGLLPPPPPPYRQDGAPKAPPLPPPAFWRPWP", "length": 370 }, "evidence": [ { "id": "F1SSX6", "url": "https://omabrowser.org/oma/group/F1SSX6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BKT2-1", "protein_name": "Transcription factor HES-7", "gene_name": "Hes7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVTRERAENRDGPKMLKPLVEKRRRDRINRSLEELRLLLLERTRDQNLRNPKLEKAEILEFAVGYLRERSRVEPPGVPRSPGQDAEALASCYLSGFRECLLRLAAFAHDASPAARSQLFSALHGYRRPKPPRPEAVDPGLPAPRPPLDPASPILGPALHQRPPVHQGPPSPRLAWSPSHCSSRAGDSGAPAPLTGLLPPPPPPYRQDGAPKAPSLPPPAFWRPWP", "length": 225 }, "evidence": [ { "id": "F1SSX6", "url": "https://omabrowser.org/oma/group/F1SSX6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "pmid": "" }, { "name": "anterior/posterior pattern specification", "id": "GO:0009952", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009952", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "pmid": "" }, { "name": "regulation of neurogenesis", "id": "GO:0050767", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050767", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SSX6", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSX6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 225, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSX6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSX6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 69, "start_aa": "Gly", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX6" }, { "id": "PS51054", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51054" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Orange", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 122, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 29, "end_pos": 31 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSX7-1", "uniprot_ac": "F1SSX7", "uniprot_id": "F1SSX7_PIG", "mass": { "chemical_mass": 10084.0, "monoisotopic_mass": 10084.0 }, "refseq": { "ac": "NP_001231536", "name": "protein AF1q", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231536" }, "gene_names": [ { "name": "MLLT11", "type": "recommended", "evidence": [ { "id": "F1SSX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ] }, { "name": "MLLT11", "type": "synonym", "evidence": [ { "id": "NP_001231536", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231536" } ] } ], "protein_names": [ { "name": "Protein AF1q", "type": "recommended", "evidence": [ { "id": "F1SSX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX7/entry#names_and_taxonomy" } ] }, { "name": "myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)", "type": "synonym", "evidence": [ { "id": "NP_001231536", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231536" } ] }, { "name": "myeloid/lymphoid or mixed-lineage leukemia", "type": "synonym", "evidence": [ { "id": "NP_001231536", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231536" } ] }, { "name": "protein AF1q", "type": "synonym", "evidence": [ { "id": "NP_001231536", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231536" } ] }, { "name": "translocated to, 11", "type": "synonym", "evidence": [ { "id": "NP_001231536", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231536" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MLLT11", "url": "https://www.uniprot.org/uniprotkb/F1SSX7", "locus": { "chromosome": "4", "start_pos": 98164676, "end_pos": 98171674, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030278", "url": "https://www.ensembl.org/id/ENSSSCG00000030278" } ] } } ], "crossref": [ { "id": "ENSSSCG00000030278", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030278", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520242", "url": "https://www.ncbi.nlm.nih.gov/gene/100520242", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026778", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026778", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520242", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520242", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RISPVDF", "url": "https://omabrowser.org/oma/group/RISPVDF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSX7", "url": "https://www.orthodb.org/?gene=F1SSX7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15404", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15404", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15404:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15404:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231536", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231536", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSX7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDPVSSQYSSFLFWRMPIPELDLSELEGLGLSDTSTYKIKDSSVGKMTGQATGAEQEKNPEGDALLEYSTFNFWRAPIASIQSFELDLL", "length": 90, "header": "tr|F1SSX7-1|F1SSX7_PIG Isoform 1 of Protein AF1q OS=Sus scrofa OX=9823 GN=MLLT11 PE=1 SV=1 CANONICAL=F1SSX7-1" }, "isoforms": [ { "isoform_ac": "F1SSX7-1", "url": "https://www.uniprot.org/uniprotkb/F1SSX7/entry#F1SSX7-1", "sequence": { "sequence": "MRDPVSSQYSSFLFWRMPIPELDLSELEGLGLSDTSTYKIKDSSVGKMTGQATGAEQEKNPEGDALLEYSTFNFWRAPIASIQSFELDLL", "length": 90, "header": "tr|F1SSX7-1|F1SSX7_PIG Isoform 1 of Protein AF1q OS=Sus scrofa OX=9823 GN=MLLT11 PE=1 SV=1 CANONICAL=F1SSX7-1" }, "locus": { "chromosome": "4", "start_pos": 98167330, "end_pos": 98167061, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000105728.1", "url": "https://www.ensembl.org/id/ENSSSCT00000105728.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079526.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079526.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520242", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520242", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1RVM4-1", "protein_name": "Protein AF1q", "gene_name": "MLLT11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLDTISSQYDSFIYWRMPIPRLELAELEGLGLGQGSLYAPHSKLPEAAQEPGCAEEDSLLPFSSFNFWRAPIASISSFDFDLI", "length": 83 }, "evidence": [ { "id": "F1SSX7", "url": "https://omabrowser.org/oma/group/F1SSX7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A9J7F7C3-1", "protein_name": "Protein AF1q", "gene_name": "Mllt11", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGTSVDRCGSVTVLRGLPQSGLDLPGASTTSFCLGPQTCEGIMRDPVSSQYSSFLFWRMPIPELNLSELEDLGLSDTPTYKIEDSNVGKMGGQATGAEQKNPEGDPLLEYSTFNFWRAPIASIHSIDLDLL", "length": 131 }, "evidence": [ { "id": "F1SSX7", "url": "https://omabrowser.org/oma/group/F1SSX7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A3KQS5-1", "protein_name": "Protein AF1q", "gene_name": "mllt11", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLDKTSSQFDSFLFWRQPIPSLDLSELEDLGISAPKSKEMKSTKSFPRQDEDEDRELSKFSTFNFWKEPIPSIDTLDFSLLL", "length": 82 }, "evidence": [ { "id": "F1SSX7", "url": "https://omabrowser.org/oma/group/F1SSX7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P97783-1", "protein_name": "Protein AF1q", "gene_name": "Mllt11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRDPVSSQYSSFLFWRMPIPELDLSELEGLGLSDTPTYESKDSSSVGKMNGQASGTEQKNPEGDPLLEYSTFNFWRAPIASIHSVDLDLL", "length": 90 }, "evidence": [ { "id": "F1SSX7", "url": "https://omabrowser.org/oma/group/F1SSX7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q0VCT1-1", "protein_name": "Protein AF1q", "gene_name": "MLLT11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRDPVSSQYSSFLFWRMPIPELDLSELEGLGLSDTSTYKIQDSSAAKMTGKAPGAEQEKNPEGDALLEYSTFNFWRAPIASIHSFELDLL", "length": 90 }, "evidence": [ { "id": "F1SSX7", "url": "https://omabrowser.org/oma/group/F1SSX7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q13015-1", "protein_name": "Protein AF1q", "gene_name": "MLLT11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRDPVSSQYSSFLFWRMPIPELDLSELEGLGLSDTATYKVKDSSVGKMIGQATAADQEKNPEGDGLLEYSTFNFWRAPIASIHSFELDLL", "length": 90 }, "evidence": [ { "id": "F1SSX7", "url": "https://omabrowser.org/oma/group/F1SSX7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "pmid": "" }, { "name": "extrinsic apoptotic signaling pathway", "id": "GO:0097191", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097191", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "pmid": "" }, { "name": "positive regulation of release of cytochrome c from mitochondria", "id": "GO:0090200", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090200", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "pmid": "" }, { "name": "intrinsic apoptotic signaling pathway", "id": "GO:0097193", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097193", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "pmid": "" }, { "name": "positive regulation of mitochondrial depolarization", "id": "GO:0051901", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051901", "evidence": [ { "database": "UniProtKB", "id": "F1SSX7", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSX7" }, { "id": "PF15017", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15017" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Putative WW-binding", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 79, "start_aa": "Ser", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSY0-1", "uniprot_ac": "F1SSY0", "uniprot_id": "F1SSY0_PIG", "mass": { "chemical_mass": 20650.0, "monoisotopic_mass": 20650.0 }, "refseq": { "ac": "NP_001191299", "name": "tumor necrosis factor alpha-induced protein 8-like protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191299" }, "gene_names": [ { "name": "TNFAIP8L2", "type": "recommended", "evidence": [ { "id": "F1SSY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSY0" } ] }, { "name": "TNFAIP8L2", "type": "synonym", "evidence": [ { "id": "NP_001191299", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191299" } ] } ], "protein_names": [ { "name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "type": "recommended", "evidence": [ { "id": "F1SSY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSY0/entry#names_and_taxonomy" } ] }, { "name": "tumor necrosis factor alpha-induced protein 8-like protein 2", "type": "synonym", "evidence": [ { "id": "NP_001191299", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191299" } ] }, { "name": "tumor necrosis factor, alpha-induced protein 8-like 2", "type": "synonym", "evidence": [ { "id": "NP_001191299", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191299" } ] } ], "function": [ { "annotation": "Acts as a negative regulator of innate and adaptive immunity by maintaining immune homeostasis. Plays a regulatory role in the Toll-like signaling pathway by determining the strength of LPS-induced signaling and gene expression. Inhibits TCR-mediated T-cell activation and negatively regulate T-cell function to prevent hyperresponsiveness. Also inhibits autolysosome formation via negatively modulating MTOR activation by interacting with RAC1 and promoting the disassociation of the RAC1-MTOR complex. Plays an essential role in NK-cell biology by acting as a checkpoint and displaying an expression pattern correlating with NK-cell maturation process and by negatively regulating NK-cell maturation and antitumor immunity. Mechanistically, suppresses IL-15-triggered mTOR activity in NK-cells.", "evidence": [ { "database": "UniProtKB", "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0#function" }, { "database": "UniProtKB", "id": "ARBA00053716", "url": "https://www.uniprot.org/uniprotkb/ARBA00053716#function" } ] }, { "annotation": "Findings provide an important basis for further understanding of porcine TNFAIP8L2 regulation and function in swine.", "evidence": [ { "database": "RefSeq", "id": "NP_001191299", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191299" }, { "database": "PubMed", "id": "20640581", "url": "https://glygen.org/publication/PubMed/20640581" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TNFAIP8L2", "url": "https://www.uniprot.org/uniprotkb/F1SSY0", "locus": { "chromosome": "4", "start_pos": 98093426, "end_pos": 98096531, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006634", "url": "https://www.ensembl.org/id/ENSSSCG00000006634" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006634", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006634", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100155916", "url": "https://www.ncbi.nlm.nih.gov/gene/100155916", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155916", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155916", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IRRVFDH", "url": "https://omabrowser.org/oma/group/IRRVFDH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSY0", "url": "https://www.orthodb.org/?gene=F1SSY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12757", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12757", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12757:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12757:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05527", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05527", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1483255", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483255", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001191299", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191299", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESFSSKSLALQAEKKLLSKMAGRSVVHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKVAVLHRSGCFSPSELALATRFRQKLRQGAMTVLSFSEVDFTFEAAVLASLLTECRDMLLELVAQHLTPKSHGRIRHVFDHFSDLGLLTALYGPDFTSRLGKICDGLRKLLDEGKL", "length": 184, "header": "tr|F1SSY0-1|F1SSY0_PIG Isoform 1 of Tumor necrosis factor alpha-induced protein 8-like protein 2 OS=Sus scrofa OX=9823 GN=TNFAIP8L2 PE=3 SV=1 CANONICAL=F1SSY0-1" }, "isoforms": [ { "isoform_ac": "F1SSY0-1", "url": "https://www.uniprot.org/uniprotkb/F1SSY0/entry#F1SSY0-1", "sequence": { "sequence": "MESFSSKSLALQAEKKLLSKMAGRSVVHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKVAVLHRSGCFSPSELALATRFRQKLRQGAMTVLSFSEVDFTFEAAVLASLLTECRDMLLELVAQHLTPKSHGRIRHVFDHFSDLGLLTALYGPDFTSRLGKICDGLRKLLDEGKL", "length": 184, "header": "tr|F1SSY0-1|F1SSY0_PIG Isoform 1 of Tumor necrosis factor alpha-induced protein 8-like protein 2 OS=Sus scrofa OX=9823 GN=TNFAIP8L2 PE=3 SV=1 CANONICAL=F1SSY0-1" }, "locus": { "chromosome": "4", "start_pos": 98094508, "end_pos": 98093957, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007270.6", "url": "https://www.ensembl.org/id/ENSSSCT00000007270.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007075.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007075.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Characterization and transcriptional regulation analysis of the porcine TNFAIP8L2 gene.", "journal": "Molecular genetics and genomics : MGG", "date": "2010-09", "authors": "Li Anning, Chen Yaosheng, Zhao Xiao, Niu Yuna, Cong Peiqing, Zhang Zongwu, Chen Weiquan, Jiang Wei, Mo Delin", "evidence": [ { "database": "RefSeq", "id": "NP_001191299", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001191299" } ], "reference": [ { "type": "PubMed", "id": "20640581", "url": "https://glygen.org/publication/PubMed/20640581" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155916", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155916", "resource": "KEGG Pathway" }, { "id": "R-SSC-1483255", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483255", "resource": "Reactome", "description": "PI Metabolism" } ], "orthologs": [ { "uniprot_canonical_ac": "G3H2Z0-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "gene_name": "Tnfaip8l2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHNRTKAQRVIKDLIKVAVKVAVLHRSGCFGPGELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLIECRDILLELVEHHLTPKSHDRIRHVFDHYSDPDLLAALYGPDFTQHLSKICEGLRKLLDEGKL", "length": 184 }, "evidence": [ { "id": "F1SSY0", "url": "https://omabrowser.org/oma/group/F1SSY0/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3ZBK5-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "gene_name": "TNFAIP8L2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MESFSSKSLVLQAEKKLLSKMAGRSVAHLFADETSSEVLDELYRVSKEYTRSRPQAQRVIKDLIKVAVKVAVLHRSGCFNPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLASLLTECRDVLLELVERHLTPKSHGRIRHVFDHFSDAGLLTALYGPDYTQHLGKICGGLRKLLDEGKL", "length": 184 }, "evidence": [ { "id": "F1SSY0", "url": "https://omabrowser.org/oma/group/F1SSY0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYJ8-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "gene_name": "Tnfaip8l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRSKAQRVIKDLIKVAVKVAVLHRSGCFSPGELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLIECREILLELVEHHLTPKSHDRIRHVFDHYSDPDLLTALYGPDFTQHLDKICDGLRKLLDEGKL", "length": 184 }, "evidence": [ { "id": "F1SSY0", "url": "https://omabrowser.org/oma/group/F1SSY0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P589-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "gene_name": "TNFAIP8L2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLTECRDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGPDFTQHLGKICDGLRKLLDEGKL", "length": 184 }, "evidence": [ { "id": "F1SSY0", "url": "https://omabrowser.org/oma/group/F1SSY0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9D8Y7-1", "protein_name": "Tumor necrosis factor alpha-induced protein 8-like protein 2", "gene_name": "Tnfaip8l2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPKAQRVIKDLIKVAVKVAVLHRSGCFGPGELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLLVECRDILLELVEHHLTPKSHDRIRHVFDHYSDPDLLAALYGPDFTQHLGKICDGLRKLLDEGKL", "length": 184 }, "evidence": [ { "id": "F1SSY0", "url": "https://omabrowser.org/oma/group/F1SSY0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0" } ], "pmid": "" }, { "name": "negative regulation of inflammatory response", "id": "GO:0050728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050728", "evidence": [ { "database": "UniProtKB", "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0" } ], "pmid": "" }, { "name": "regulation of apoptotic process", "id": "GO:0042981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042981", "evidence": [ { "database": "UniProtKB", "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0" } ], "pmid": "" }, { "name": "regulation of intracellular signal transduction", "id": "GO:1902531", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902531", "evidence": [ { "database": "UniProtKB", "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0" } ], "pmid": "" }, { "name": "negative regulation of T cell activation", "id": "GO:0050868", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050868", "evidence": [ { "database": "UniProtKB", "id": "F1SSY0", "url": "https://www.uniprot.org/uniprotkb/F1SSY0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSY2-1", "uniprot_ac": "F1SSY2", "uniprot_id": "F1SSY2_PIG", "mass": { "chemical_mass": 26041.0, "monoisotopic_mass": 26041.0 }, "refseq": { "ac": "XP_001929692", "name": "sodium channel modifier 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929692" }, "gene_names": [ { "name": "SCNM1", "type": "recommended", "evidence": [ { "id": "F1SSY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ] }, { "name": "SCNM1", "type": "synonym", "evidence": [ { "id": "XP_001929692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929692" } ] } ], "protein_names": [ { "name": "Sodium channel modifier 1", "type": "recommended", "evidence": [ { "id": "F1SSY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSY2/entry#names_and_taxonomy" } ] }, { "name": "sodium channel modifier 1", "type": "synonym", "evidence": [ { "id": "XP_001929692", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929692" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SCNM1", "url": "https://www.uniprot.org/uniprotkb/F1SSY2", "locus": { "chromosome": "4", "start_pos": 98079851, "end_pos": 98082351, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006632", "url": "https://www.ensembl.org/id/ENSSSCG00000006632" } ] } } ], "crossref": [ { "id": "F1SSY2", "url": "https://alphafold.ebi.ac.uk/entry/F1SSY2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000006632", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006632", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157107", "url": "https://www.ncbi.nlm.nih.gov/gene/100157107", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033570", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033570", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157107", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157107", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NGKYACT", "url": "https://omabrowser.org/oma/group/NGKYACT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SSY2", "url": "https://www.orthodb.org/?gene=F1SSY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32297", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32297", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32297:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32297:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15803", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15803", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15805", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15805", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001929692", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001929692", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SSY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFACAICPHRPVLDTLAMLTAHRAGKKHLSSLQLFYGKKHPGKGLEPNPRQQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKNRPEAPRPSVSRSAFSPPEVESQSERISRELEPAAASQTKESATVSSPAPMSPTRRRALDHYLTLRSSGWIPDGQGRWIKDENVEFDSDEEEPPDLPLD", "length": 230, "header": "tr|F1SSY2-1|F1SSY2_PIG Isoform 1 of Sodium channel modifier 1 OS=Sus scrofa OX=9823 GN=SCNM1 PE=4 SV=1 CANONICAL=F1SSY2-1" }, "isoforms": [ { "isoform_ac": "F1SSY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SSY2/entry#F1SSY2-1", "sequence": { "sequence": "MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFACAICPHRPVLDTLAMLTAHRAGKKHLSSLQLFYGKKHPGKGLEPNPRQQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKNRPEAPRPSVSRSAFSPPEVESQSERISRELEPAAASQTKESATVSSPAPMSPTRRRALDHYLTLRSSGWIPDGQGRWIKDENVEFDSDEEEPPDLPLD", "length": 230, "header": "tr|F1SSY2-1|F1SSY2_PIG Isoform 1 of Sodium channel modifier 1 OS=Sus scrofa OX=9823 GN=SCNM1 PE=4 SV=1 CANONICAL=F1SSY2-1" }, "locus": { "chromosome": "4", "start_pos": 98082255, "end_pos": 98079942, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007268.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007268.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007073.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007073.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157107", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157107", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZSG3-1", "protein_name": "Tropomodulin 4", "gene_name": "Tmod4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSYQKELEKYRDIDEDEILRTLSPEELEQLDCELQEMDPENMLLPAGLRQRDQTKKSPTGPLDRDALLQYLEQQALEVKERDDLVPFTGEKKGKPFIQPKREIPAQEQITLEPELEEALSHATDAEMCDIAAILGMYTLMSNKQYYDAICSGEICNTEGISSVVQPDKYKPVPDEPPNPTNIEEMLKRVRSNDKELEEVNLNNIQDIPIPVLSDLCEAMKTNTYVRSFSLVATKSGDPIANAVADMLRENRSLLSLNIESNFISSTGLMAVLKAVRENATLTELRVDNQRQWPGDAVEMEMATVLEQCPSIVRFGYHFTQQGPRARAANAMTRNNELRRQQKKR", "length": 345 }, "evidence": [ { "id": "F1SSY2", "url": "https://omabrowser.org/oma/group/F1SSY2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3H2Z2-1", "protein_name": "Sodium channel modifier 1", "gene_name": "Scnm1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFACAICPHRPVLDTLAMLTAHRAGKKHLSSLKLFYGKKQSGKKTEQKPRQQNELKTESKAEAPLLTQTRLITQSALHRAPHYSSCCRRKHRPEAPAPSVSSSPLPAPEVGLQSAKISREPETKAGSHAKESSDLLASAPISPTKRRVLNHYLTLRSSGWIPDGQGRWIKDENVEFDSDEEEPPDLPLD", "length": 229 }, "evidence": [ { "id": "F1SSY2", "url": "https://omabrowser.org/oma/group/F1SSY2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2YDS5-1", "protein_name": "Sodium channel modifier 1", "gene_name": "scnm1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSFKREGDDQSQLNILKKRRVSDLLSNFIPDDEATLMKNGRYSCLVCSHRPVFDTVDMLVVHRKGKRHLEGMKWFYGKKNQLRREIDKRRHQDYVKAEDDRQEPSSSAPLLTQTRKITHHALLRTVPYSSCHKKASERSESSSKEHRNDLANSHLSMRTESNDSRTTVHQGPSEVKGEAKKKKKGASTLSSSVCEPLTEQRRRELDHYLKLKSSGWLQDRSGKWVKDENVEFDSDEEEPTLLPPCSESS", "length": 249 }, "evidence": [ { "id": "F1SSY2", "url": "https://omabrowser.org/oma/group/F1SSY2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q3ZBR0-1", "protein_name": "Sodium channel modifier 1", "gene_name": "SCNM1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFACAICPHRPVLDTLAMLTAHRAGKKHLSSLQLFYGKKPPGKGTEQNPRQHNELRREETTAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPRPSVSRPPLPPPEVEPQGGKISREPEPEAGSQTKESATVSSPAPMSPTRRRALDHYLTLRSSGWIPDGRGRWIKDENVEFDSDEEEPPDLPLD", "length": 230 }, "evidence": [ { "id": "F1SSY2", "url": "https://omabrowser.org/oma/group/F1SSY2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9BWG6-1", "protein_name": "Sodium channel modifier 1", "gene_name": "SCNM1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSFKREGDDWSQLNVLKKRRVGDLLASYIPEDEALMLRDGRFACAICPHRPVLDTLAMLTAHRAGKKHLSSLQLFYGKKQPGKERKQNPKHQNELRREETKAEAPLLTQTRLITQSALHRAPHYNSCCRRKYRPEAPGPSVSLSPMPPSEVKLQSGKISREPEPAAGPQAEESATVSAPAPMSPTRRRALDHYLTLRSSGWIPDGRGRWVKDENVEFDSDEEEPPDLPLD", "length": 230 }, "evidence": [ { "id": "F1SSY2", "url": "https://omabrowser.org/oma/group/F1SSY2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ], "pmid": "" }, { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ], "pmid": "" }, { "name": "spliceosomal complex", "id": "GO:0005681", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005681", "evidence": [ { "database": "UniProtKB", "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ], "pmid": "" }, { "name": "enzyme binding", "id": "GO:0019899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019899", "evidence": [ { "database": "UniProtKB", "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ], "pmid": "" }, { "name": "alternative mRNA splicing, via spliceosome", "id": "GO:0000380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000380", "evidence": [ { "database": "UniProtKB", "id": "F1SSY2", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SSY2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 230, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SSY2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SSY2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" }, { "id": "PF15805", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sodium channel modifier 1 acidic C-terminal", "eco_id": "ECO_0000259", "start_pos": 183, "end_pos": 228, "start_aa": "Ser", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SSY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSY2" }, { "id": "PF15803", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15803" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sodium channel modifier 1 zinc-finger", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 69, "start_aa": "Cys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SSZ8-1", "uniprot_ac": "F1SSZ8", "uniprot_id": "F1SSZ8_PIG", "mass": { "chemical_mass": 129567.0, "monoisotopic_mass": 129567.0 }, "refseq": { "ac": "XP_003125815", "name": "zinc finger protein 687", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125815" }, "gene_names": [ { "name": "ZNF687", "type": "recommended", "evidence": [ { "id": "F1SSZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8" } ] }, { "name": "ZNF687", "type": "synonym", "evidence": [ { "id": "XP_003125815", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125815" } ] } ], "protein_names": [ { "name": "Zinc finger protein 687", "type": "recommended", "evidence": [ { "id": "F1SSZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 687", "type": "synonym", "evidence": [ { "id": "XP_003125815", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125815" } ] } ], "function": [ { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "F1SSZ8", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SSZ8", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNF687", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8", "locus": { "chromosome": "4", "start_pos": 97949931, "end_pos": 97958882, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006627", "url": "https://www.ensembl.org/id/ENSSSCG00000006627" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006627", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006627", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517892", "url": "https://www.ncbi.nlm.nih.gov/gene/100517892", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041697", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041697", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517892", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517892", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SSZ8", "url": "https://www.orthodb.org/?gene=F1SSZ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47222", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47222", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47222:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47222:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25412", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25412", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9940951", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003125815", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125815", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SSZ8", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SSZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDMKTPDFDDLLAAFDIPDIDANEAIHSGPEENEGPGGSAKPEPSVGGESREATTATAGDGPGVPAQASDHGQPPSDISAVSVIVKNTVCPEQSESLAGNSGGEGARAGGMTKEGPMGPRLMQNGFGGPEPSLPGTPHSPAPPPSGGTWKEKSLEGKAPLDLFAHFGPEPGEHPDPLPPSAPSPPREGAMTPPPFPSPFELARENGPALLPPTSPPLGALKQESCSSPLRPQSLARPGSGSSPEAAGVPASASPPRVAGVPFFKQSPGHQSPLASPKLPSCQPLKEEEDERPVDKSPPGSPQSPSSGAEAADEDSNDSPASSSSSRPLKVRIKTIKTSCGNITRTVTRVPSDPDPPAPLAEGGFLAETSLLKLSPATPTPEGPKVVSVQLGDGTRLKGTVLPVATIQNASTAMLMAASVARKAVVLPGGTATSPKTMAKNVLGLVPQALPKADGRPGLGTGGQKVNGASVVMVQPSKPATGPGAAGGTVISRTQSSLVEAFNKILNSKNLLPAYRPNLSPPAEAGLALPPTGYRCLECGDAFSLEKSLARHYDRRSMRIEVTCNHCARRLVFFNKCSLLLHAREHKDKGLVMQCSHLVMRPVALDQMVGQPDITPLLAVPPALGPPALPALGKGDGAVTSVAVTAVAAEAPVLPLSSEPPAAPATSSYTCFRCLECKEQCRDKAGMAAHFQQLGPPAPGATSNVCPTCPMMLPNRCSFGAHQRMHKNRPPHVCPECGGNFLQANFQTHLREACLHFSRRVGYRCPSCAVVFGGVNSIKSHIQTSHCEVFHKCPICPMAFKSAPSAHAHLYTQHPSFHTQQAKMIYKCAMCDTVFTHKPLLSSHFDQHLLPQRVSVFKCPSCPLLFAQKRTMLEHLKNTHQSGRAGEETAGKGAGGALLTPKTEPEELSVSRGGAAAPTEESSSSSEEEELPSSPEPPRPTKRTRRELGSKGIKGGGGGSGGWTCGLCHSWFPERDEYVGHMKKEHGKSVKKFPCRLCERSFCSAPSLRRHVRVNHEGIKRVYPCRYCTEGKRTFSSRLILEKHVQVRHGLPLGAQSPGRGSTLVRGPGARAQGPGRKRRQSSDSCSEEPDSTTPPAKSPRGGPGSGGHGPLRYRSSGSVEPSLMVGLRVDGGAQQCLDCGLCFASPGSLSRHRFISHKKKRGVSSASALGLGDGEEEAPPPSRSDPEGGDSPSPASGGPLTCKVCGKSCDSPLNLKTHFRTHGMAFIRARQGGSGDN", "length": 1238, "header": "tr|F1SSZ8-1|F1SSZ8_PIG Isoform 1 of Zinc finger protein 687 OS=Sus scrofa OX=9823 GN=ZNF687 PE=3 SV=1 CANONICAL=F1SSZ8-1" }, "isoforms": [ { "isoform_ac": "F1SSZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8/entry#F1SSZ8-1", "sequence": { "sequence": "MGDMKTPDFDDLLAAFDIPDIDANEAIHSGPEENEGPGGSAKPEPSVGGESREATTATAGDGPGVPAQASDHGQPPSDISAVSVIVKNTVCPEQSESLAGNSGGEGARAGGMTKEGPMGPRLMQNGFGGPEPSLPGTPHSPAPPPSGGTWKEKSLEGKAPLDLFAHFGPEPGEHPDPLPPSAPSPPREGAMTPPPFPSPFELARENGPALLPPTSPPLGALKQESCSSPLRPQSLARPGSGSSPEAAGVPASASPPRVAGVPFFKQSPGHQSPLASPKLPSCQPLKEEEDERPVDKSPPGSPQSPSSGAEAADEDSNDSPASSSSSRPLKVRIKTIKTSCGNITRTVTRVPSDPDPPAPLAEGGFLAETSLLKLSPATPTPEGPKVVSVQLGDGTRLKGTVLPVATIQNASTAMLMAASVARKAVVLPGGTATSPKTMAKNVLGLVPQALPKADGRPGLGTGGQKVNGASVVMVQPSKPATGPGAAGGTVISRTQSSLVEAFNKILNSKNLLPAYRPNLSPPAEAGLALPPTGYRCLECGDAFSLEKSLARHYDRRSMRIEVTCNHCARRLVFFNKCSLLLHAREHKDKGLVMQCSHLVMRPVALDQMVGQPDITPLLAVPPALGPPALPALGKGDGAVTSVAVTAVAAEAPVLPLSSEPPAAPATSSYTCFRCLECKEQCRDKAGMAAHFQQLGPPAPGATSNVCPTCPMMLPNRCSFGAHQRMHKNRPPHVCPECGGNFLQANFQTHLREACLHFSRRVGYRCPSCAVVFGGVNSIKSHIQTSHCEVFHKCPICPMAFKSAPSAHAHLYTQHPSFHTQQAKMIYKCAMCDTVFTHKPLLSSHFDQHLLPQRVSVFKCPSCPLLFAQKRTMLEHLKNTHQSGRAGEETAGKGAGGALLTPKTEPEELSVSRGGAAAPTEESSSSSEEEELPSSPEPPRPTKRTRRELGSKGIKGGGGGSGGWTCGLCHSWFPERDEYVGHMKKEHGKSVKKFPCRLCERSFCSAPSLRRHVRVNHEGIKRVYPCRYCTEGKRTFSSRLILEKHVQVRHGLPLGAQSPGRGSTLVRGPGARAQGPGRKRRQSSDSCSEEPDSTTPPAKSPRGGPGSGGHGPLRYRSSGSVEPSLMVGLRVDGGAQQCLDCGLCFASPGSLSRHRFISHKKKRGVSSASALGLGDGEEEAPPPSRSDPEGGDSPSPASGGPLTCKVCGKSCDSPLNLKTHFRTHGMAFIRARQGGSGDN", "length": 1238, "header": "tr|F1SSZ8-1|F1SSZ8_PIG Isoform 1 of Zinc finger protein 687 OS=Sus scrofa OX=9823 GN=ZNF687 PE=3 SV=1 CANONICAL=F1SSZ8-1" }, "locus": { "chromosome": "4", "start_pos": 97955733, "end_pos": 97950756, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007261.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007261.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007066.2", "url": "https://www.ensembl.org/id/ENSSSCP00000007066.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 380, "start_aa": "Thr", "end_pos": 380, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr380", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SSZ8", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517892", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517892", "resource": "KEGG Pathway" }, { "id": "R-SSC-9940951", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "resource": "Reactome", "description": "Interaction of NuRD complexes with transcription factors" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SSZ8", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SSZ8", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SSZ8", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SSZ8", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SSZ8", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" }, { "start_pos": 409, "end_pos": 411, "annotation": "n_glycosylation_sequon" }, { "start_pos": 518, "end_pos": 520, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SSZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SSZ8" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 534, "end_pos": 552, "start_aa": "Tyr", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 380 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 317, "end_pos": 319 }, { "start_pos": 342, "end_pos": 344 }, { "start_pos": 409, "end_pos": 411 }, { "start_pos": 518, "end_pos": 520 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST06-1", "uniprot_ac": "F1ST06", "uniprot_id": "F1ST06_PIG", "mass": { "chemical_mass": 28985.0, "monoisotopic_mass": 28985.0 }, "refseq": {}, "gene_names": [ { "name": "NAA38", "type": "recommended", "evidence": [ { "id": "F1ST06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST06" } ] } ], "protein_names": [ { "name": "N-alpha-acetyltransferase 38, NatC auxiliary subunit", "type": "recommended", "evidence": [ { "id": "F1ST06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST06/entry#names_and_taxonomy" } ] }, { "name": "LSM domain-containing protein 1", "type": "synonym", "evidence": [ { "id": "F1ST06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST06/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Auxillary component of the N-terminal acetyltransferase C (NatC) complex which catalyzes acetylation of N-terminal methionine residues. N-terminal acetylation protects proteins from ubiquitination and degradation by the N-end rule pathway.", "evidence": [ { "database": "UniProtKB", "id": "F1ST06", "url": "https://www.uniprot.org/uniprotkb/F1ST06#function" }, { "database": "UniProtKB", "id": "ARBA00057425", "url": "https://www.uniprot.org/uniprotkb/ARBA00057425#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST06", "url": "https://www.uniprot.org/uniprotkb/F1ST06" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NAA38", "url": "https://www.uniprot.org/uniprotkb/F1ST06", "locus": {} } ], "crossref": [ { "id": "F1ST06", "url": "https://alphafold.ebi.ac.uk/entry/F1ST06", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017971", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017971", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06168", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06168", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010920", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010920", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047575", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047575", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10701", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10701", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10701:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10701:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01423", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01423", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1ST06", "url": "https://www.uniprot.org/uniprotkb/F1ST06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST06-1", "url": "https://www.uniprot.org/uniprotkb/F1ST06-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGVLRSSGGRKRPSVLILSGLGYRECLGRTISRGRKTREWGVRLRKKVFSLPSRVPKGYVRTERGENFSRYLRTSGDLDLSEPFAEAGDAREISAVAEETRRGGDLAKENRSGALARSQTPRSRKVLSKLKGLEEARGQMAGAGPTMLLREENGCCSRRQSSSSAGDSDGEREDSPSARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLAGPPYL", "length": 265, "header": "tr|F1ST06-1|F1ST06_PIG Isoform 1 of N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Sus scrofa OX=9823 GN=NAA38 PE=3 SV=4 CANONICAL=F1ST06-1" }, "isoforms": [ { "isoform_ac": "F1ST06-1", "url": "https://www.uniprot.org/uniprotkb/F1ST06/entry#F1ST06-1", "sequence": { "sequence": "MSGVLRSSGGRKRPSVLILSGLGYRECLGRTISRGRKTREWGVRLRKKVFSLPSRVPKGYVRTERGENFSRYLRTSGDLDLSEPFAEAGDAREISAVAEETRRGGDLAKENRSGALARSQTPRSRKVLSKLKGLEEARGQMAGAGPTMLLREENGCCSRRQSSSSAGDSDGEREDSPSARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLAGPPYL", "length": 265, "header": "tr|F1ST06-1|F1ST06_PIG Isoform 1 of N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Sus scrofa OX=9823 GN=NAA38 PE=3 SV=4 CANONICAL=F1ST06-1" }, "locus": { "chromosome": "12", "start_pos": 53112443, "end_pos": 53111299, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019556.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019556.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019038.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019038.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST06", "url": "https://www.uniprot.org/uniprotkb/F1ST06" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1ST06", "url": "https://www.uniprot.org/uniprotkb/F1ST06" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "NatC complex", "id": "GO:0031417", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031417", "evidence": [ { "database": "UniProtKB", "id": "F1ST06", "url": "https://www.uniprot.org/uniprotkb/F1ST06" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 68, "end_pos": 70, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1ST06-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 265, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1ST06-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1ST06" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST06" }, { "id": "PS52002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS52002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Sm", "eco_id": "ECO_0000259", "start_pos": 180, "end_pos": 258, "start_aa": "Arg", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 190, "end_pos": 192 }, { "start_pos": 68, "end_pos": 70 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST09-1", "uniprot_ac": "F1ST09", "uniprot_id": "F1ST09_PIG", "mass": { "chemical_mass": 101488.0, "monoisotopic_mass": 101488.0 }, "refseq": {}, "gene_names": [ { "name": "CNTROB", "type": "recommended", "evidence": [ { "id": "F1ST09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ] } ], "protein_names": [ { "name": "Centrobin, centriole duplication and spindle assembly protein", "type": "synonym", "evidence": [ { "id": "F1ST09", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST09/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNTROB", "url": "https://www.uniprot.org/uniprotkb/F1ST09", "locus": { "chromosome": "12", "start_pos": 53201667, "end_pos": 53181642, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017968", "url": "https://www.ensembl.org/id/ENSSSCG00000017968" } ] } } ], "crossref": [ { "id": "F1ST09", "url": "https://alphafold.ebi.ac.uk/entry/F1ST09", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017968", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017968", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR038923", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038923", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR34439", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34439", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34439:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34439:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST09-1", "url": "https://www.uniprot.org/uniprotkb/F1ST09-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSATSPSSPLRAKDLLSESSEAPGLNQASSEVTSQLYSSLHLSRQAETTARAQLYLPSTSPPPHEVLDGLAQELSRSLSVGLENNLKKKDGSRHIFEMESVRGQLQSMLQTSRDSAYRDPPTPGAGSERREEDSFDSDSTATLLNTRPLQDLSPSSSAQALEELFPRYTSLRPGPPLNPPDFQGLREALDSEHTRRKHCERHIQSLQTRVLELQQQLAVAVTADRKKDVMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSKQQETVTRLEQSLSEAVEALNREQEGARLQQRERETLEEERQALTLSLELEQQRCRALQEERDEARAGQLSERRHLETLQAALEEERQTWAQQEHQLQERYQALQEESQAQLERERGSSQREAQAAREAQQQLALVQCEVRRLEGELDTARRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTERLAQAQESSLRQAASLREHHRKQLQELSAQHQQELSTHLAQFKVEMAEREERQQQVAQDYELRLAREQARVRELQSGNQQLEEQRVELVERLQAMLQAHWEEASQLLSATSLPPHPPVPPASPSSPGPQEPEKGERRTWTVPPVAVALKPALQQSREARHEELPGGLPVLCSPSSDLSLLLGPTFQSQHSFQPLEPKPDLTSSSAEAFPAGDFPSDHRAERPFLEEDAGSRGDGLPQQAPPPPSQLQGLKHFLQQLLETAPQSNETPSVDPLPAKSGPLTVSSWEEAPQVPRLPPPVHKTKVPLAMASSLFRVHELPSARSQGGGPSGGSPERGGDGLASSRQLMEVSQLLRLYQARGWGALPAEDLLLYLKRLEHSGRTDSRGDNVPRSNTDSRLGEIPRKEIPSQALPRRLATAPKTERPPARKKSGHPAPGSMRSRGGIWR", "length": 906, "header": "tr|F1ST09-1|F1ST09_PIG Isoform 1 of Centrobin, centriole duplication and spindle assembly protein OS=Sus scrofa OX=9823 GN=CNTROB PE=4 SV=4 CANONICAL=F1ST09-1" }, "isoforms": [ { "isoform_ac": "F1ST09-1", "url": "https://www.uniprot.org/uniprotkb/F1ST09/entry#F1ST09-1", "sequence": { "sequence": "MATSATSPSSPLRAKDLLSESSEAPGLNQASSEVTSQLYSSLHLSRQAETTARAQLYLPSTSPPPHEVLDGLAQELSRSLSVGLENNLKKKDGSRHIFEMESVRGQLQSMLQTSRDSAYRDPPTPGAGSERREEDSFDSDSTATLLNTRPLQDLSPSSSAQALEELFPRYTSLRPGPPLNPPDFQGLREALDSEHTRRKHCERHIQSLQTRVLELQQQLAVAVTADRKKDVMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSKQQETVTRLEQSLSEAVEALNREQEGARLQQRERETLEEERQALTLSLELEQQRCRALQEERDEARAGQLSERRHLETLQAALEEERQTWAQQEHQLQERYQALQEESQAQLERERGSSQREAQAAREAQQQLALVQCEVRRLEGELDTARRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTERLAQAQESSLRQAASLREHHRKQLQELSAQHQQELSTHLAQFKVEMAEREERQQQVAQDYELRLAREQARVRELQSGNQQLEEQRVELVERLQAMLQAHWEEASQLLSATSLPPHPPVPPASPSSPGPQEPEKGERRTWTVPPVAVALKPALQQSREARHEELPGGLPVLCSPSSDLSLLLGPTFQSQHSFQPLEPKPDLTSSSAEAFPAGDFPSDHRAERPFLEEDAGSRGDGLPQQAPPPPSQLQGLKHFLQQLLETAPQSNETPSVDPLPAKSGPLTVSSWEEAPQVPRLPPPVHKTKVPLAMASSLFRVHELPSARSQGGGPSGGSPERGGDGLASSRQLMEVSQLLRLYQARGWGALPAEDLLLYLKRLEHSGRTDSRGDNVPRSNTDSRLGEIPRKEIPSQALPRRLATAPKTERPPARKKSGHPAPGSMRSRGGIWR", "length": 906, "header": "tr|F1ST09-1|F1ST09_PIG Isoform 1 of Centrobin, centriole duplication and spindle assembly protein OS=Sus scrofa OX=9823 GN=CNTROB PE=4 SV=4 CANONICAL=F1ST09-1" }, "locus": { "chromosome": "12", "start_pos": 53201256, "end_pos": 53181980, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019553.4", "url": "https://www.ensembl.org/id/ENSSSCT00000019553.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019035.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019035.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 124, "start_aa": "Thr", "end_pos": 124, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr124", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of cilium assembly", "id": "GO:1902017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902017", "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "pmid": "" }, { "name": "centriole replication", "id": "GO:0007099", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007099", "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "pmid": "" }, { "name": "centrosome separation", "id": "GO:0051299", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051299", "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "pmid": "" }, { "name": "mitotic cytokinetic process", "id": "GO:1902410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902410", "evidence": [ { "database": "UniProtKB", "id": "F1ST09", "url": "https://www.uniprot.org/uniprotkb/F1ST09" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 726, "end_pos": 728, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1ST09-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 906, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1ST09-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1ST09" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 124 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 726, "end_pos": 728 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST28-1", "uniprot_ac": "F1ST28", "uniprot_id": "F1ST28_PIG", "mass": { "chemical_mass": 33712.0, "monoisotopic_mass": 33712.0 }, "refseq": {}, "gene_names": [ { "name": "CD68", "type": "recommended", "evidence": [ { "id": "F1ST28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST28" } ] } ], "protein_names": [ { "name": "Macrosialin", "type": "recommended", "evidence": [ { "id": "F1ST28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST28/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Could play a role in phagocytic activities of tissue macrophages, both in intracellular lysosomal metabolism and extracellular cell-cell and cell-pathogen interactions. Binds to tissue- and organ-specific lectins or selectins, allowing homing of macrophage subsets to particular sites. Rapid recirculation of CD68 from endosomes and lysosomes to the plasma membrane may allow macrophages to crawl over selectin-bearing substrates or other cells.", "evidence": [ { "database": "UniProtKB", "id": "F1ST28", "url": "https://www.uniprot.org/uniprotkb/F1ST28#function" }, { "database": "UniProtKB", "id": "ARBA00056711", "url": "https://www.uniprot.org/uniprotkb/ARBA00056711#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST28", "url": "https://www.uniprot.org/uniprotkb/F1ST28" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CD68", "url": "https://www.uniprot.org/uniprotkb/F1ST28", "locus": { "chromosome": "12", "start_pos": 52877695, "end_pos": 52874785, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017956", "url": "https://www.ensembl.org/id/ENSSSCG00000017956" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017956", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017956", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048528", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048528", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TTKHPNT", "url": "https://omabrowser.org/oma/group/TTKHPNT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11506", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11506", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11506:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11506:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01299", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01299", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1ST28", "url": "https://www.uniprot.org/uniprotkb/F1ST28", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST28-1", "url": "https://www.uniprot.org/uniprotkb/F1ST28-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLAVLFLGALLGLLAAQGAGVDSPHKKSATLLPSFTVTPTATESTTSHRTTTPRTTTTGTTSHGPTTVTHNPATTTSHGNATVHPTSSSTATSPGSSTRSPHPGPPPPSPSPSPGSQEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQTILLPLIIGLIFLGLLILVLVTFCIIRRRPPAYQPL", "length": 318, "header": "tr|F1ST28-1|F1ST28_PIG Isoform 1 of Macrosialin OS=Sus scrofa OX=9823 GN=CD68 PE=1 SV=3 CANONICAL=F1ST28-1" }, "isoforms": [ { "isoform_ac": "F1ST28-1", "url": "https://www.uniprot.org/uniprotkb/F1ST28/entry#F1ST28-1", "sequence": { "sequence": "MTLAVLFLGALLGLLAAQGAGVDSPHKKSATLLPSFTVTPTATESTTSHRTTTPRTTTTGTTSHGPTTVTHNPATTTSHGNATVHPTSSSTATSPGSSTRSPHPGPPPPSPSPSPGSQEAIGDYTWTNGSQPCVQLQAQIQIRVLYPTQGGGEAWGISVLNPNKTKALGGCEGAHPHVRLSFPYGQLTFGFKQQPQESTVYLNYMAVEYNVSFPRAAQWTFSVQNSSLRDLQTPVGRSYSCRNASIILSTAFHLDLLSLKLQAAQLPPTGNFGPSFSCPSDQTILLPLIIGLIFLGLLILVLVTFCIIRRRPPAYQPL", "length": 318, "header": "tr|F1ST28-1|F1ST28_PIG Isoform 1 of Macrosialin OS=Sus scrofa OX=9823 GN=CD68 PE=1 SV=3 CANONICAL=F1ST28-1" }, "locus": { "chromosome": "12", "start_pos": 52877056, "end_pos": 52874826, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019540.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019540.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019022.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019022.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST28", "url": "https://www.uniprot.org/uniprotkb/F1ST28" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "F7F2B3-1", "protein_name": "Cd68 molecule", "gene_name": "Cd68", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFPVCLTLLVLLVAQGTGKDCPHKKAATLLPSFTETPTTTGSTASPTTTHRPTTTSHRPTTTSHRPTTTSHRPTTTSHRPTTTSHGNATVSPTTNSPGFSTVGPHPGPPPPSPSPSPSSTGALGNYTWTNGSQPCVQLQAQIQIRILYLTQGGKKAWGLSVLNPNKTKVQGGCDSAHPHLALSFPYGQLTFGFKQVYSLNLSSSFTLLYPTPRPPKPPPCSMDMDATVPDALSLSVHLKDRHQSHSTVYLNYMAVEYNVSFPQAAQWTFSAQNSSLQELQAPLGQSFCCGNTSIVLSPAIHLDLLSLRLQAAQLPDKGHFGPCFSCASDQSLLLPLIIGLVLLGLLTLVLIAFCVTRRRQSTYQPL", "length": 367 }, "evidence": [ { "id": "F1ST28", "url": "https://omabrowser.org/oma/group/F1ST28/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P31996-1", "protein_name": "Macrosialin", "gene_name": "Cd68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRLPVCLILLGPLIAQGTEEDCPHKKAVTLLPSFTMTPTATESTASPTTSHRPTTTSHGNVTVHTSSGPTTVTHNPATTTSHGNATISHATVSPTTNGTATSPRSSTVGPHPGPPPPSPSPRSKGALGNYTWANGSQPCVQLQAQIQIRILYPIQGGRKAWGISVLNPNKTKVQGGCDGTHPHLSLSFPYGQLTFGFKQDLHQSPSTVYLDYMAVEYNVSFPQAAQWTFMAQNSSLRELQAPLGQSFCCGNASIVLSPAVHLDLLSLRLQAAQLPDKGHFGPCFSCNRDQSLLLPLIIGLVLLGLLTLVLIAFCITRRRQSTYQPL", "length": 326 }, "evidence": [ { "id": "F1ST28", "url": "https://omabrowser.org/oma/group/F1ST28/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P34810-1", "protein_name": "Macrosialin", "gene_name": "CD68", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRLAVLFSGALLGLLAAQGTGNDCPHKKSATLLPSFTVTPTVTESTGTTSHRTTKSHKTTTHRTTTTGTTSHGPTTATHNPTTTSHGNVTVHPTSNSTATSQGPSTATHSPATTSHGNATVHPTSNSTATSPGFTSSAHPEPPPPSPSPSPTSKETIGDYTWTNGSQPCVHLQAQIQIRVMYTTQGGGEAWGISVLNPNKTKVQGSCEGAHPHLLLSFPYGHLSFGFMQDLQQKVVYLSYMAVEYNVSFPHAAQWTFSAQNASLRDLQAPLGQSFSCSNSSIILSPAVHLDLLSLRLQAAQLPHTGVFGQSFSCPSDRSILLPLIIGLILLGLLALVLIAFCIIRRRPSAYQAL", "length": 354 }, "evidence": [ { "id": "F1ST28", "url": "https://omabrowser.org/oma/group/F1ST28/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "establishment of protein localization to organelle", "id": "GO:0072594", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072594", "evidence": [ { "database": "UniProtKB", "id": "F1ST28", "url": "https://www.uniprot.org/uniprotkb/F1ST28" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1ST28", "url": "https://www.uniprot.org/uniprotkb/F1ST28" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F1ST28", "url": "https://www.uniprot.org/uniprotkb/F1ST28" } ], "pmid": "" }, { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "F1ST28", "url": "https://www.uniprot.org/uniprotkb/F1ST28" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 243, "end_pos": 245, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST28" }, { "id": "PF01299", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01299" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lysosome-associated membrane glycoprotein 2-like luminal", "eco_id": "ECO_0000259", "start_pos": 108, "end_pos": 278, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 163, "end_pos": 165 }, { "start_pos": 210, "end_pos": 212 }, { "start_pos": 225, "end_pos": 227 }, { "start_pos": 243, "end_pos": 245 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST47-1", "uniprot_ac": "F1ST47", "uniprot_id": "F1ST47_PIG", "mass": { "chemical_mass": 58801.0, "monoisotopic_mass": 58801.0 }, "refseq": {}, "gene_names": [ { "name": "TBRG4", "type": "recommended", "evidence": [ { "id": "F1ST47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ] } ], "protein_names": [ { "name": "FAST kinase domain-containing protein 4", "type": "recommended", "evidence": [ { "id": "F1ST47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST47/entry#names_and_taxonomy" } ] }, { "name": "Protein TBRG4", "type": "synonym", "evidence": [ { "id": "F1ST47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST47/entry#names_and_taxonomy" } ] }, { "name": "Transforming growth factor beta regulator 4", "type": "synonym", "evidence": [ { "id": "F1ST47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST47/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Plays a role in processing of mitochondrial RNA precursors and in stabilization of a subset of mature mitochondrial RNA species, such as MT-CO1, MT-CO2, MT-CYB, MT-CO3, MT-ND3, MT-ND5 and MT-ATP8/6. May play a role in cell cycle progression.", "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47#function" }, { "database": "UniProtKB", "id": "ARBA00045209", "url": "https://www.uniprot.org/uniprotkb/ARBA00045209#function" }, { "database": "UniProtKB", "id": "F1ST63", "url": "https://www.uniprot.org/uniprotkb/F1ST63#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TBRG4", "url": "https://www.uniprot.org/uniprotkb/F1ST47", "locus": { "chromosome": "18", "start_pos": 50378084, "end_pos": 50365988, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016732", "url": "https://www.ensembl.org/id/ENSSSCG00000016732" } ] } } ], "crossref": [ { "id": "F1ST47", "url": "https://alphafold.ebi.ac.uk/entry/F1ST47", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016732", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016732", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd23739", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23739", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "397641", "url": "https://www.ncbi.nlm.nih.gov/gene/397641", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010622", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010622", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013579", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013579", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:397641", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397641", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LCILQQA", "url": "https://omabrowser.org/oma/group/LCILQQA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1ST63", "url": "https://www.orthodb.org/?gene=F1ST63", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21228:SF59", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21228:SF59", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06743", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06743", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08368", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08368", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST47-1", "url": "https://www.uniprot.org/uniprotkb/F1ST47-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST63", "url": "https://www.uniprot.org/uniprotkb/F1ST63", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST63-1", "url": "https://www.uniprot.org/uniprotkb/F1ST63-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASRLVRRCTCLLREAARLAPAMSPVGQPRLTRGAPRTLTSSATSPSSHLPGSLSELVERGQVFTPYPERQEVDHLIERATQPEEILALLGGGHCLHQNRAALMVIQLSRLLSEKPKDKALLIKDARFQHLLRLVNSQINAVWHGTLVKLLRSLYALGLPATSKELQSVEQEVRWRMRRLRYKHLAFLAESSATYMQEQGSQELLAELLVHLERRWTEIDDGRTVVAMMVKIGHLSQSLMNRLEDKHVLDRAQSIALPHLCNMLLAFARVNFRPEREDQFFSLVHEKLGSQLAGLEPALQVDVVWSLCVLQQAREAELQAVLRPELHGQFLGDKSPKDQSTFQKLLHINATAQLEHPEYTGPHLPSSALVPRPSALDKKVTPLQKELQETLKGLLGSANKGSFLVATRYGWILDAEVLLDADSQLLPLRDFVAPHLAQPSGSQPLPAGAKRLAFLCWEFPNFNSRSKDLLGRFVLARRHLLAAGFLLVDVPYYEWLELKSEWQKSAYLKDKMRKAVAEELAK", "length": 522, "header": "tr|F1ST47-1|F1ST47_PIG Isoform 1 of FAST kinase domain-containing protein 4 OS=Sus scrofa OX=9823 GN=TBRG4 PE=3 SV=2 CANONICAL=F1ST47-1" }, "isoforms": [ { "isoform_ac": "F1ST47-1", "url": "https://www.uniprot.org/uniprotkb/F1ST47/entry#F1ST47-1", "sequence": { "sequence": "MASRLVRRCTCLLREAARLAPAMSPVGQPRLTRGAPRTLTSSATSPSSHLPGSLSELVERGQVFTPYPERQEVDHLIERATQPEEILALLGGGHCLHQNRAALMVIQLSRLLSEKPKDKALLIKDARFQHLLRLVNSQINAVWHGTLVKLLRSLYALGLPATSKELQSVEQEVRWRMRRLRYKHLAFLAESSATYMQEQGSQELLAELLVHLERRWTEIDDGRTVVAMMVKIGHLSQSLMNRLEDKHVLDRAQSIALPHLCNMLLAFARVNFRPEREDQFFSLVHEKLGSQLAGLEPALQVDVVWSLCVLQQAREAELQAVLRPELHGQFLGDKSPKDQSTFQKLLHINATAQLEHPEYTGPHLPSSALVPRPSALDKKVTPLQKELQETLKGLLGSANKGSFLVATRYGWILDAEVLLDADSQLLPLRDFVAPHLAQPSGSQPLPAGAKRLAFLCWEFPNFNSRSKDLLGRFVLARRHLLAAGFLLVDVPYYEWLELKSEWQKSAYLKDKMRKAVAEELAK", "length": 522, "header": "tr|F1ST47-1|F1ST47_PIG Isoform 1 of FAST kinase domain-containing protein 4 OS=Sus scrofa OX=9823 GN=TBRG4 PE=3 SV=2 CANONICAL=F1ST47-1" }, "locus": { "chromosome": "18", "start_pos": 50377930, "end_pos": 50369226, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018223.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018223.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017731.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017731.2" } ] } }, { "isoform_ac": "F1ST63-1", "url": "https://www.uniprot.org/uniprotkb/F1ST47/entry#F1ST63-1", "sequence": { "sequence": "MASRLVRRCTCLLREAARLAPAMSPVGQPRLTRGAPRTLTSSATSPSSHLPGSLSELVERGQVFTPYPERQEVDHLIERATQPEEILALLGGGHCLHQNRAALMVIQLSRLLSEKPKDKALLIKDARFQHLLRLVNSQINAVWHGTLVKLLRSLYALGLPATSKELQSVEQEVRWRMRRLRYKHLAFLAESSATYMQEQGSQELLAELLVHLERRWTEIDDGRTVVAMMVKIGHLSQSLMNRLEDKCLELVEQFGPEELRKVLVMLAAQNRRSVPLLRAVSYHLVQKPFTLTKSILLDLAYAYGKLGFHQTQVFQRLAADLLPHTPSLTSSEVARCTKSFAFLKWLSLPLFEAFAQHVLDRAQSIALPHLCNMLLAFARVNFRPEREDQFFSLVHEKLGSQLAGLEPALQVDVVWSLCVLQQAREAELQAVLRPELHGQFLGDKSPKDQSTFQKLLHINATAQLEHPEYTGPHLPSSALVPRPSALDKKVTPLQKELQETLKGLLGSANKGSFLVATRYGWILDAEVLLDADSQLLPLRDFVAPHLAQPSGSQPLPAGAKRLAFLCWEFPNFNSRSKDLLGRFVLARRHLLAAGFLLVDVPYYEWLELKSEWQKSAYLKDKMRKAVAEELAK", "length": 632, "header": "tr|F1ST63-1|F1ST63_PIG Computationally mapped isoform of FAST kinase domain-containing protein 4 OS=Sus scrofa OX=9823 GN=TBRG4 PE=3 SV=3 CANONICAL=F1ST47-1" }, "locus": { "chromosome": "18", "start_pos": 50377930, "end_pos": 50369226, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018214.4", "url": "https://www.ensembl.org/id/ENSSSCT00000018214.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017723.3", "url": "https://www.ensembl.org/id/ENSSSCP00000017723.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:397641", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:397641", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AC66-1", "protein_name": "FAST kinase domain-containing protein 4", "gene_name": "TBRG4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAARLVQRCCWRHLATFTCSPAAATAALLLPSGKASAARALPHPPPASIHTSVPSTWNADRFSVKEQVEENSNSEHRVILNLIEAATSPQELFQLGELHSLNSNQASLVVTRLSRLAVEKKLETGDILQDERFQQLIEIVDSQISQVWNNTLVGLLKSLYSLGMESSSREMQSVEHEVLWRLRRLSFRQLASLAEFLAVKQGKESKLLSEVIKKLELRWTELEGTRTVVMLIAKVGHISSVLMDRLEDKALELAEQFSPEDIRRITLALAYQNRRSVPLLRAMSYHLIQKHSELNLSILMDLIFAYGKLNFHQPQVFQKIATDLQPHVSAMTPIEVTRCIRSFALLKWLSLPLFEAISQYALDNAKQLSISHLCNIILSFARLNFQPSGSEDFFNMAHEELQGQLDSLEPQLLTDLVWSLCVLQQAKPPYLQRVLAPDFHAVIQGDSSPKAQNLRMKLIQINAAAKLESPEYQGPFLPAGMLNAAEPAAEKVTLLQSSLQEALAGVLGSQDNGRWDVHTIYGWQIDAEMVLNSENKPLPLKDFAAPHLPHSEGTKPLPPGARRVAFLRWEFPNFSNRSKELLGRYAMARRHIQAAGFLVVDVPHYEFLELKLERQRAAYLRDKLHKVVAKELAS", "length": 634 }, "evidence": [ { "id": "F1ST47", "url": "https://omabrowser.org/oma/group/F1ST47/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0AAA9S1P7-1", "protein_name": "FAST kinase domain-containing protein 4", "gene_name": "TBRG4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAARLVRRCTCLLREAARLAPAVSPVGQLRLPQGTQKPLTSSATSPSSRLPGLLSEFVEKEQVFTPYTGRQEVEQLIEKATQPEELLELLGSGHCLQQNHAALALIQLSRLLSEKPKDKAALIQDARFWQLLHLVNSQITVVWHGTLVKLLRSLYTLGLPATSKDLRSVEQEVRWRMRRLKYKHLAFLAESSATYMQEQGSRELLAELLVHLERRWAEIEDRRMVVAMMMKTGHLSESLMNRLEDKHVLDRAQSITLPHLCNMLLAFARVNFRPEREDPFFSLVHEKLGSELVGLEPALQVDVVWALCVLQQVREAELQAVLRPEFHTQFLGGKSPKDQSTFQKLLHINATAQLEHPEYTGPLLPTSALVPSPSALEQKMTPLQKELQETLKGLLGSADKGSFMVPTQYGWVLDAEVLLDTESQLLPLRDFVAPHLTPPSGSQPLPPGAKRLAFLRWEFPNFNSRSKDLLGRFMLARRHLLAAGFLLVDVPYYEWMELKSEWQKSAYLKDKMRKAVAEELAK", "length": 522 }, "evidence": [ { "id": "F1ST47", "url": "https://omabrowser.org/oma/group/F1ST47/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F3K7-1", "protein_name": "FAST kinase domain-containing protein 4", "gene_name": "tbrg4", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTTRLLCRWARWFPRSPRTATASARLQTSTVHHTEPLCLMTLSWIRPSVRHLCQGNELAKIDEGTVPYERTKLIKLVEKASTPDEVLQLWDQHGGTGSEAARCLIQLNLRVVEKGSKGVLLDPRCKSMQDTLNTQLSTVWNGSLVGLLRTLTMLGLPAHAPLLGAIQNEVLWRIRRLSYRHLSYLADWVAFQRKMGYENEVLTSTLLKQLELRWTELSDSRTITILMGRASLFTPSLMDKLEDKALELAESFTAEDMRRVALALASQNRRAVPLLRALSYHLNQKPSFELKTPLLLDIAYVYGKLNFSQTQFFKRLASELLPRLSELSSSEVSRCAKSLALLKWLHLPLFEGFAQHYVSNSEKYSTLQMCNLLMAFAKLNFQLGKEQFYLKVHKALEDSFTSLEPFLKTDLVWSLCVLNQANSDYISSVIKPDFQKKLSAGGIEGRTENYRQKLLNICAYAQLEPLGLAVDASAVLLPDRQSKAESSTSALQKTLHTALWSLANERKQALHTAVKTLYGWTIDGELVVDSENKPIDMENFKAPHLPEGGGADALPEGTRRIAFVAWDFSNFCLKSKDLLGRFAMQKRHLQLAGFIVVEVPYFEFLELKSDWQKVAYLKDKLGKAVAEEMAK", "length": 631 }, "evidence": [ { "id": "F1ST47", "url": "https://omabrowser.org/oma/group/F1ST47/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HMC7-1", "protein_name": "FAST kinase domain-containing protein 4", "gene_name": "Tbrg4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAVRLMKRCTCLLRDTTRLVPTITPVGRVRLAGVACKTLTSSVSSPSSGSLTELLGKEQVFTPYPEHQEVDHLIEKATRPEELLELLGGGYSLHRNHPALILIRLSYLLSEKPKEKALLVEDARFLQLVSRIDSQVSSIWHGTLVKLLRSMYTLVLPQMSKELRSVEQEVRWRLRRLKYKHLVFLVESCTSYMQEQHSQELLAELLMHLERRWTEINDSRTVVTMMMKAGHLSESLMNRLEDKCLELVEQFGPDELRKVLVTLAAQSRRSVPLLRAISYHLVQKPFPLTKGVLLDLAYAYGKLNFHQTQVSQRLAADLLPFVPSMTLGEVARCTKSFAFLKWLNLSLFEAFTQHLLSRVQDVSLTHLCSILLAFARLNFHPEQEDEFFKLVHEKLDSMLGSLEPTLQVDLVWALCVLQQVREAELQTVLHPGLHTQFLGSKSPKDQSTFQKLVHINTTALLEHPEYKGPFLPASAVALCPSSSSKQMTPLQKELQETLKELLGSTDQGRLDVVTQYGWVLDAEVLLDTDGHFLPLRDFVAPHLAQPVGNRPLPPGAKRIAFLRWEFPNFNSRSKDLLGRFVLARRHVLAAGFLVVDVPYYEWLDLKSGWQKGAYLKDKMRKAVAEELAK", "length": 629 }, "evidence": [ { "id": "F1ST47", "url": "https://omabrowser.org/oma/group/F1ST47/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q5M9G9-1", "protein_name": "FAST kinase domain-containing protein 4", "gene_name": "Tbrg4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAVRLMKQCTCLLREATRLVPTVAPVGRLRLAGVACKTLTSSVSSPSSGSLTELLGKEQVFTPYPEHQEVDYLIEKATRPEELLELLGGDHSLHHNHAALILIRLSYLLSEKPKEKALLVEDARFQQLVRLVDSQITSVWHGTLVKLLRSLYTLVLPQGSKELRSVEQEVRWRLRRLKYKHLVFLAESCAPFMKEQHSKELLAELLRHLERRWTEISDSRTLVSMMTMAGHLSESLMNRLEDKCLELVEQFGPDELRKVLMTLAAQSRRSVPLLRAISYHLVQKPFPMTKGMLLDLAYAYGKLSFHQTQVAQRLAADLLPFIPSMTPGEVARCAKSFAFLKWLNLPLFEAFTQHLLNSAQDVSLSHLCSVLLAFARLNFHPEQEDQFFNLVHEKLDSVLGSLEPALQVDLVWALCVLQQVQVAELQTVLHPGLHTRFLESKSPKDQSTFQKLVHINSTALLEYPEYKGPFLPASAVAPSPSPSNKKMTPLQKELQDALKALLGNNDTGSLEVATQYGWVLDAEVLLDAEGHFLPLRDFVAPHLAQPVGNQPLPPGAKRIAFLRWEFPNFNSRSKDLLGRFVLARRHVLAAGFLVVDVPYYEWLDLKSEWQKTAYLKDKMRKAVAEELAK", "length": 629 }, "evidence": [ { "id": "F1ST47", "url": "https://omabrowser.org/oma/group/F1ST47/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91YM4-1", "protein_name": "FAST kinase domain-containing protein 4", "gene_name": "Tbrg4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVRLMKRCTCLLREATRLVPTVAPVGRLRLAGVSCKTLTSSVSSPSSGSLAELLGKEQVFTPYPEHQELDFLIEKASRPEQLLELLGSDHSLHHNHAALILIRLSYLLSEKPKEKALLAEDARFQRLVKLVDSQITCVWHGTLVKLLRSLYTLVLPQISKELQSVEQEVRWRLRRLKYKHLVFLAESCASFMKEQHSQELLAELLMHLERRWTEINDSRTLVTMMTMAGHLSESLMNHLEDKCLELVEQFGPDELRKVLVTLAAQSRRSVPLLRAISYHLVQKPFPMTKGMLLDLAYAYGKLSFHQTQVSQRLAADLLPFIPSMTPGEVARCAKSFAFLKWLNLPLFEAFTQHLLSRVQDVSLSHVCSVLLAFARLNFHPEQEEDQFFSMVHEKLDPVLGSLEPALQVDLVWALCVLQHVHETELHTVLHPGLHARFLESKSPKDQSTFQKLVHINTTALLEHPEYKGPFLPASAVAPIPSPSNKKMTPLQKELQETLKALLGNTDKGSLEVATQYGWVLDAEVLLDADGHFLPLRNFVAPHLAQPVGNQPLPPGAKRIAFLRWEFPNFNSRSKDLLGRFVLARRHVLAAGFLVVDVPYYEWLDLKSEWQKSAYLKDKMRKAMAEELAK", "length": 630 }, "evidence": [ { "id": "F1ST47", "url": "https://omabrowser.org/oma/group/F1ST47/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q969Z0-1", "protein_name": "FAST kinase domain-containing protein 4", "gene_name": "TBRG4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAHLVKRCTCLLREAARQAPAMAPVGRLRLAWVAHKTLTSSATSPISHLPGSLMEPVEKERASTPYIEKQVDHLIKKATRPEELLELLGGSHDLDSNQAAMVLIRLSHLLSEKPEDKGLLIQDAHFHQLLCLLNSQIASVWHGTLSKLLGSLYALGIPKASKELQSVEQEVRWRMRKLKYKHLAFLAESCATLSQEQHSQELLAELLTHLERRWTEIEDSHTLVTVMMKVGHLSEPLMNRLEDKCLELVEHFGPNELRKVLVMLAAQSRRSVPLLRAISYHLVQKPFSLTKDVLLDVAYAYGKLSFHQTQVSQRLATDLLSLMPSLTSGEVAHCAKSFALLKWLSLPLFEAFAQHVLNRAQDITLPHLCSVLLAFARLNFHPDQEDQFFSLVHEKLGSELPGLEPALQVDLVWALCVLQQAREAELQAVLHPEFHIQFLGGKSQKDQNTFQKLLHINATALLEYPEYSGPLLPASAVAPGPSALDRKVTPLQKELQETLKGLLGSADKGSLEVATQYGWVLDAEVLLDSDGEFLPVRDFVAPHLAQPTGSQSPPPGSKRLAFLRWEFPNFNSRSKDLLGRFVLARRHIVAAGFLIVDVPFYEWLELKSEWQKGAYLKDKMRKAVAEELAK", "length": 631 }, "evidence": [ { "id": "F1ST47", "url": "https://omabrowser.org/oma/group/F1ST47/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ], "pmid": "" }, { "name": "ribonucleoprotein granule", "id": "GO:0035770", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035770", "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of mitochondrial mRNA stability", "id": "GO:0044528", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044528", "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ], "pmid": "" }, { "name": "mitochondrial RNA processing", "id": "GO:0000963", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000963", "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ], "pmid": "" }, { "name": "mitochondrial mRNA processing", "id": "GO:0090615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090615", "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "F1ST47", "url": "https://www.uniprot.org/uniprotkb/F1ST47" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1ST47-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 522, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1ST47-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1ST47" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST47" }, { "id": "PS51286", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51286" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RAP", "eco_id": "ECO_0000259", "start_pos": 452, "end_pos": 510, "start_aa": "Leu", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 349, "end_pos": 351 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST54-1", "uniprot_ac": "F1ST54", "uniprot_id": "F1ST54_PIG", "mass": { "chemical_mass": 57435.0, "monoisotopic_mass": 57435.0 }, "refseq": { "ac": "XP_003353634", "name": "aldehyde dehydrogenase X, mitochondrial", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353634" }, "gene_names": [ { "name": "ALDH1B1", "type": "recommended", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ] }, { "name": "ALDH1B1", "type": "synonym", "evidence": [ { "id": "XP_003353634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353634" } ] } ], "protein_names": [ { "name": "Aldehyde dehydrogenase 1A1", "type": "recommended", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "1.2.1.19", "type": "synonym", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "1.2.1.28", "type": "synonym", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "1.2.1.3", "type": "synonym", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "3-deoxyglucosone dehydrogenase", "type": "synonym", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "ALDH-E1", "type": "synonym", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "ALHDII", "type": "synonym", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "Aldehyde dehydrogenase family 1 member A1", "type": "synonym", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "Aldehyde dehydrogenase, cytosolic", "type": "synonym", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "Retinal dehydrogenase 1", "type": "synonym", "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#names_and_taxonomy" } ] }, { "name": "aldehyde dehydrogenase X, mitochondrial", "type": "synonym", "evidence": [ { "id": "XP_003353634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353634" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ALDH1B1", "url": "https://www.uniprot.org/uniprotkb/F1ST54", "locus": { "chromosome": "1", "start_pos": 239114730, "end_pos": 239109809, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005361", "url": "https://www.ensembl.org/id/ENSSSCG00000005361" } ] } } ], "crossref": [ { "id": "F1ST54", "url": "https://alphafold.ebi.ac.uk/entry/F1ST54", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005361", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005361", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07141", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07141", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156278", "url": "https://www.ncbi.nlm.nih.gov/gene/100156278", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015590", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015590", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016161", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016161", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016162", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016162", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016163", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016163", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029510", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029510", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156278", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156278", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WVNRYGR", "url": "https://omabrowser.org/oma/group/WVNRYGR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1ST54", "url": "https://www.orthodb.org/?gene=F1ST54", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11699", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11699", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00171", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00171", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-71384", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-71384", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9837999", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003353634", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003353634", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "11840", "url": "https://www.rhea-db.org/rhea/11840", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "16185", "url": "https://www.rhea-db.org/rhea/16185", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "19105", "url": "https://www.rhea-db.org/rhea/19105", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "25294", "url": "https://www.rhea-db.org/rhea/25294", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "42084", "url": "https://www.rhea-db.org/rhea/42084", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47132", "url": "https://www.rhea-db.org/rhea/47132", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "67244", "url": "https://www.rhea-db.org/rhea/67244", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "67248", "url": "https://www.rhea-db.org/rhea/67248", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "67252", "url": "https://www.rhea-db.org/rhea/67252", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "67256", "url": "https://www.rhea-db.org/rhea/67256", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "67276", "url": "https://www.rhea-db.org/rhea/67276", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "67332", "url": "https://www.rhea-db.org/rhea/67332", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST54-1", "url": "https://www.uniprot.org/uniprotkb/F1ST54-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLHFLVPRLFGLCRPVAPYSSAAALPSPILNPDIRYNQLFINNEWQDAVSKKTFQTVNPTTGEVIGHVAEGDQADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQAWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEVGFPPGVVNILTGYGPTAGTAIAHHMDVNKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVEQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKRRKVGNPFELDTQQGPQVNKEQFERILGYIQLGQKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKRIEEVIERANNTRYGLAAAVFTQDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVPQKDS", "length": 517, "header": "tr|F1ST54-1|F1ST54_PIG Isoform 1 of Aldehyde dehydrogenase 1A1 OS=Sus scrofa OX=9823 GN=ALDH1B1 PE=1 SV=1 CANONICAL=F1ST54-1" }, "isoforms": [ { "isoform_ac": "F1ST54-1", "url": "https://www.uniprot.org/uniprotkb/F1ST54/entry#F1ST54-1", "sequence": { "sequence": "MLHFLVPRLFGLCRPVAPYSSAAALPSPILNPDIRYNQLFINNEWQDAVSKKTFQTVNPTTGEVIGHVAEGDQADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQAWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEVGFPPGVVNILTGYGPTAGTAIAHHMDVNKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVEQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKRRKVGNPFELDTQQGPQVNKEQFERILGYIQLGQKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKRIEEVIERANNTRYGLAAAVFTQDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVPQKDS", "length": 517, "header": "tr|F1ST54-1|F1ST54_PIG Isoform 1 of Aldehyde dehydrogenase 1A1 OS=Sus scrofa OX=9823 GN=ALDH1B1 PE=1 SV=1 CANONICAL=F1ST54-1" }, "locus": { "chromosome": "1", "start_pos": 239113713, "end_pos": 239112163, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005901.4", "url": "https://www.ensembl.org/id/ENSSSCT00000005901.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005754.1", "url": "https://www.ensembl.org/id/ENSSSCP00000005754.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 244, "start_aa": "Thr", "end_pos": 244, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr244", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156278", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156278", "resource": "KEGG Pathway" }, { "id": "R-SSC-71384", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-71384", "resource": "Reactome", "description": "Ethanol oxidation" }, { "id": "R-SSC-9837999", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9837999", "resource": "Reactome", "description": "Mitochondrial protein degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3H7E6-1", "protein_name": "aldehyde dehydrogenase (NAD(+))", "gene_name": "Aldh1b1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLSFRFSVTRLLCLQGRTTSYSTVAALPNPIPNPEIRYNQLFINNEWRDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMGHAVDQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKQRKVGNPFELDTQQGPQVDKEQFERILGYIGLGQKEGAKLLCGGERFGDRGFFIKPTVFGDVQDDMRIAKEEIFGPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKAIYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLRAYTEVKTVTIKVPEKNS", "length": 519 }, "evidence": [ { "id": "F1ST54", "url": "https://omabrowser.org/oma/group/F1ST54/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P30837-1", "protein_name": "Aldehyde dehydrogenase family 1 member B1, mitochondrial", "gene_name": "ALDH1B1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRFLAPRLLSLQGRTARYSSAAALPSPILNPDIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHVDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMEHAVEQCHEALFFNMGQCCCAGSRTFVEESIYNEFLERTVEKAKQRKVGNPFELDTQQGPQVDKEQFERVLGYIQLGQKEGAKLLCGGERFGERGFFIKPTVFGGVQDDMRIAKEEIFGPVQPLFKFKKIEEVVERANNTRYGLAAAVFTRDLDKAMYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVPQKNS", "length": 517 }, "evidence": [ { "id": "F1ST54", "url": "https://omabrowser.org/oma/group/F1ST54/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q54FY1-1", "protein_name": "Aldehyde dehydrogenase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKVQLPNTKLFINNEWVESISGKKFKTFNPTNEELICEVSEGDKEDVDKAVKAARNAFENGPWGTTMSSEERGRIILKLANLIENHKEKLAQLETLDNGKSIVSAREDIDFCVRVIRYFGGWADKIQGKTIPISSEFTSITKHEAIGVVALIVAWNYPVMLLCWKLGPALAAGCTIVAKSSEFTPLTALYLCELFKEAGFPPGVFNLVNGFGATVGNALSYHMDIDKISFTGSTITGRKIMEGAAKSNLKPVTLELGGKSPNIFFSDCQIDHCVEAAKDYVFSNNSQNCCFSSRFFVHESIHDAFLALFTEKIKQLKVGDPYEESNNLGPLVSKQQHDRVLGYIEKGKSEGATCHLGGVKHQIDGKGYFVQPTIFTNVTDDMTICKEEIFGPVVVILKFKTVDEVIKRANNTTYGLAAGIWTKDISLALNVSNKLKAGSVWVNNYDNCLPQVPFGGFKQSGIGRDLSEYAIQSYLSVKAVTIAHKTLHAHQQQ", "length": 494 }, "evidence": [ { "id": "F1ST54", "url": "https://omabrowser.org/oma/group/F1ST54/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q66HF8-1", "protein_name": "Aldehyde dehydrogenase family 1 member B1, mitochondrial", "gene_name": "Aldh1b1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLNARFLVPRLLCLQGRTTSYSTAAALPNPIPNPEIRYNQLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVRAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYLAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGKSPSIVLADADMDHAVDQCHEALFFNMGQCCCAGSRTFVEESIYHEFLERTVEKAKKRKVGNPFELDTQQGPQVDKEQFEKILGYIRLGQKEGAKLLCGGERFGERGFFIKPTVFGNVQDDMRIAREEIFGPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKALYFSQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLKAYTEVKTVTIKVSEKNS", "length": 519 }, "evidence": [ { "id": "F1ST54", "url": "https://omabrowser.org/oma/group/F1ST54/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9CZS1-1", "protein_name": "Aldehyde dehydrogenase family 1 member B1, mitochondrial", "gene_name": "Aldh1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLTARLLLPRLLCLQGRTTSYSTAAALPNPIPNPEICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEAGFPPGVVNIITGYGPTAGAAIAQHMDVDKVAFTGSTEVGHLIQKAAGESNLKRVTLELGGKSPSIVLADADMEHAVDQCHEALFFNMGQCCCAGSRTFVEESIYREFLERTVEKAKQRKVGNPFELDTQQGPQVDKEQFERILGYIRLGQKEGAKLLCGGERLGERGFFIKPTVFGDVQDGMRIAKEEIFGPVQPLFKFKKIEEVIQRANNTRYGLAAAVFTRDLDKAIYFTQALQAGTVWVNTYNIVTCHTPFGGFKESGNGRELGEDGLRAYTEVKTVTIKVPEKNS", "length": 519 }, "evidence": [ { "id": "F1ST54", "url": "https://omabrowser.org/oma/group/F1ST54/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ethanol catabolic process", "id": "GO:0006068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006068", "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "pmid": "" }, { "name": "aldehyde metabolic process", "id": "GO:0006081", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006081", "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "aldehyde dehydrogenase (NAD+) activity", "id": "GO:0004029", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004029", "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "pmid": "" }, { "name": "benzaldehyde dehydrogenase (NAD+) activity", "id": "GO:0018479", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018479", "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "pmid": "" }, { "name": "aminobutyraldehyde dehydrogenase (NAD+) activity", "id": "GO:0019145", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019145", "evidence": [ { "database": "UniProtKB", "id": "F1ST54", "url": "https://www.uniprot.org/uniprotkb/F1ST54" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 438, "end_pos": 440, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "11840", "name": "", "equation": "benzaldehyde + NAD(+) + H2O = benzoate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11840", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11840" } ] }, { "id": "16185", "name": "", "equation": "an aldehyde + NAD(+) + H2O = a carboxylate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16185", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16185" } ] }, { "id": "19105", "name": "", "equation": "4-aminobutanal + NAD(+) + H2O = 4-aminobutanoate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19105", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19105" } ] }, { "id": "25294", "name": "", "equation": "acetaldehyde + NAD(+) + H2O = acetate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "25294", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/25294" } ] }, { "id": "42084", "name": "", "equation": "9-cis-retinal + NAD(+) + H2O = 9-cis-retinoate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "42084", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/42084" } ] }, { "id": "47132", "name": "", "equation": "11-cis-retinal + NAD(+) + H2O = 11-cis-retinoate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "47132", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47132" } ] }, { "id": "67244", "name": "", "equation": "3-deoxyglucosone + NAD(+) + H2O = 2-dehydro-3-deoxy-D-gluconate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67244", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67244" } ] }, { "id": "67248", "name": "", "equation": "(E)-4-hydroxynon-2-enal + NAD(+) + H2O = (E)-4-hydroxynon-2-enoate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67248", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67248" } ] }, { "id": "67252", "name": "", "equation": "malonaldehyde + NAD(+) + H2O = 3-oxopropanoate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67252", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67252" } ] }, { "id": "67256", "name": "", "equation": "propanal + NAD(+) + H2O = propanoate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67256", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67256" } ] }, { "id": "67276", "name": "", "equation": "hexanal + NAD(+) + H2O = hexanoate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67276", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67276" } ] }, { "id": "67332", "name": "", "equation": "13-cis-retinal + NAD(+) + H2O = 13-cis-retinoate + NADH + 2 H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "67332", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/67332" } ] }, { "id": "R-SSC-5696091", "name": "ALDH1B1 tetramer oxidises CH3CHO to CH3COOH", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5696091", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5696091" } ] }, { "id": "R-SSC-9838035", "name": "CLPXP binds mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838035", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838035" } ] }, { "id": "R-SSC-9838081", "name": "LONP1 degrades mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838081", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838081" } ] }, { "id": "R-SSC-9838093", "name": "LONP1 binds mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838093", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838093" } ] }, { "id": "R-SSC-9838289", "name": "CLPXP degrades mitochondrial matrix proteins", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9838289", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9838289" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1ST54-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 517, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1ST54-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1ST54" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST54", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST54" }, { "id": "PF00171", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00171" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Aldehyde dehydrogenase", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 508, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 244 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 438, "end_pos": 440 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST55-1", "uniprot_ac": "F1ST55", "uniprot_id": "F1ST55_PIG", "mass": { "chemical_mass": 28772.0, "monoisotopic_mass": 28772.0 }, "refseq": { "ac": "XP_001924387", "name": "insulin-like growth factor-binding protein-like 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924387" }, "gene_names": [ { "name": "IGFBPL1", "type": "recommended", "evidence": [ { "id": "F1ST55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST55" } ] }, { "name": "IGFBPL1", "type": "synonym", "evidence": [ { "id": "XP_001924387", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924387" } ] } ], "protein_names": [ { "name": "Insulin like growth factor binding protein like 1", "type": "synonym", "evidence": [ { "id": "F1ST55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST55/entry#names_and_taxonomy" } ] }, { "name": "insulin-like growth factor-binding protein-like 1", "type": "synonym", "evidence": [ { "id": "XP_001924387", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924387" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST55", "url": "https://www.uniprot.org/uniprotkb/F1ST55" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IGFBPL1", "url": "https://www.uniprot.org/uniprotkb/F1ST55", "locus": { "chromosome": "1", "start_pos": 239120618, "end_pos": 239136369, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005360", "url": "https://www.ensembl.org/id/ENSSSCG00000005360" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005360", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005360", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00104", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00104", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155070", "url": "https://www.ncbi.nlm.nih.gov/gene/100155070", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013098", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013098", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155070", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155070", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PGMVCVS", "url": "https://omabrowser.org/oma/group/PGMVCVS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1ST55", "url": "https://www.orthodb.org/?gene=F1ST55", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14186", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14186", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14186:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14186:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00219", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00219", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07648", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07648", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07679", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07679", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001924387", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001924387", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1ST55", "url": "https://www.uniprot.org/uniprotkb/F1ST55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST55-1", "url": "https://www.uniprot.org/uniprotkb/F1ST55-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRSPVLFPLLLLLLPQPPAHGFGLRGAGSRIPECGPCRPERCPAPSRCPAPGIAALDECGCCTRCLGSEGASCGGRAGTRCGPGLVCASRAAGTAPEGTGLCVCAQRGTVCGSDGHSYPSVCALRLRARHEPRAHLGHLRKARDGPCEFAPVVITPPQSVHNITGAQVYLSCEVRAVPTPVVTWRKVTQSPEGTQVLEDLPGDHVNIAVQVRGGPSDHEATAWVLIKPLRKEDEGVYQCHSANAVGEAQSHGTVTVVDGSQYGAARFPALDDRM", "length": 275, "header": "tr|F1ST55-1|F1ST55_PIG Isoform 1 of Insulin like growth factor binding protein like 1 OS=Sus scrofa OX=9823 GN=IGFBPL1 PE=4 SV=2 CANONICAL=F1ST55-1" }, "isoforms": [ { "isoform_ac": "F1ST55-1", "url": "https://www.uniprot.org/uniprotkb/F1ST55/entry#F1ST55-1", "sequence": { "sequence": "MPRSPVLFPLLLLLLPQPPAHGFGLRGAGSRIPECGPCRPERCPAPSRCPAPGIAALDECGCCTRCLGSEGASCGGRAGTRCGPGLVCASRAAGTAPEGTGLCVCAQRGTVCGSDGHSYPSVCALRLRARHEPRAHLGHLRKARDGPCEFAPVVITPPQSVHNITGAQVYLSCEVRAVPTPVVTWRKVTQSPEGTQVLEDLPGDHVNIAVQVRGGPSDHEATAWVLIKPLRKEDEGVYQCHSANAVGEAQSHGTVTVVDGSQYGAARFPALDDRM", "length": 275, "header": "tr|F1ST55-1|F1ST55_PIG Isoform 1 of Insulin like growth factor binding protein like 1 OS=Sus scrofa OX=9823 GN=IGFBPL1 PE=4 SV=2 CANONICAL=F1ST55-1" }, "locus": { "chromosome": "1", "start_pos": 239136200, "end_pos": 239123998, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005900.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005900.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005753.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005753.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST55", "url": "https://www.uniprot.org/uniprotkb/F1ST55" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155070", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155070", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A5PKD8-1", "protein_name": "Insulin-like growth factor-binding protein-like 1", "gene_name": "IGFBPL1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPRSPGLFLLLLVLQPLPALGLGLRSAGGRNPECGPCRPERCPEPVRCPVPGIVARDECGCCALCLGAEGASCGGRAGARCGPGLVCASRAAGAAPEGTGLCVCAQRGSVCGSDGRSYPSVCALRLRARQAPRALPGHLHKARDGPCEFAPVVITPPQSVHNVTGAQVYLSCEVRAVPTPVVTWRKVTRSPEGTQVMEELPGDHTNIAVQVQGGPSDHEATAWVLINPLRKEDEGVYQCHSANAVGEAQSHGTVTVVDRSQYRAPRFPAPDDRL", "length": 274 }, "evidence": [ { "id": "F1ST55", "url": "https://omabrowser.org/oma/group/F1ST55/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "B0BN16-1", "protein_name": "Insulin-like growth factor-binding protein-like 1", "gene_name": "Igfbpl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLLLLLLLLPSLAWGLGLRDAGRRHPECSPCQPDRCPAPTPCPAPWISARDECGCCARCLGAEGAGCGGRVGARCGPGLVCASRASETAPEGTGLCVCAQRGAVCGSDGRSYSSICALRLRARLGTRAHHGHLHKVRDGPCEFAPVVLMPPRDIHNVTGTQVFLSCEVKAVPTPVITWKKVKHSPEGTEGLEELPGDHVNIAVQVRGGPSDHETTSWILINPLRKEDEGVYHCHAANAIGEAQSHGTVTVLDLNRYKSLYSSVPGDLL", "length": 270 }, "evidence": [ { "id": "F1ST55", "url": "https://omabrowser.org/oma/group/F1ST55/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80W15-1", "protein_name": "Insulin-like growth factor-binding protein-like 1", "gene_name": "Igfbpl1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRLPLLLLLLPSLARGLGLRDAGRRHPECSPCQQDRCPAPSPCPAPWISARDECGCCARCLGAEGASCGGPVGSRCGPGLVCASRASGTAPEGTGLCVCAQRGAVCGSDGRSYSSICALRLRARHAPRAHHGHLHKARDGPCEFAPVVLMPPRDIHNVTGTQVFLSCEVKAVPTPVITWKKVKHSPEGTEGLEELPGDHVNIAVQVRGGPSDHETTSWILINPLRKEDEGVYHCHAANAIGEAQSHGTVTVLDLNRYKSLYSSVPGDLL", "length": 270 }, "evidence": [ { "id": "F1ST55", "url": "https://omabrowser.org/oma/group/F1ST55/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WX77-1", "protein_name": "Insulin-like growth factor-binding protein-like 1", "gene_name": "IGFBPL1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPRLSLLLPLLLLLLLPLLPPLSPSLGIRDVGGRRPKCGPCRPEGCPAPAPCPAPGISALDECGCCARCLGAEGASCGGRAGGRCGPGLVCASQAAGAAPEGTGLCVCAQRGTVCGSDGRSYPSVCALRLRARHTPRAHPGHLHKARDGPCEFAPVVVVPPRSVHNVTGAQVGLSCEVRAVPTPVITWRKVTKSPEGTQALEELPGDHVNIAVQVRGGPSDHEATAWILINPLRKEDEGVYQCHAANMVGEAESHSTVTVLDLSKYRSFHFPAPDDRM", "length": 278 }, "evidence": [ { "id": "F1ST55", "url": "https://omabrowser.org/oma/group/F1ST55/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cellular response to tumor cell", "id": "GO:0071228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071228", "evidence": [ { "database": "UniProtKB", "id": "F1ST55", "url": "https://www.uniprot.org/uniprotkb/F1ST55" } ], "pmid": "" }, { "name": "regulation of cell growth", "id": "GO:0001558", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001558", "evidence": [ { "database": "UniProtKB", "id": "F1ST55", "url": "https://www.uniprot.org/uniprotkb/F1ST55" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "F1ST55", "url": "https://www.uniprot.org/uniprotkb/F1ST55" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1ST55", "url": "https://www.uniprot.org/uniprotkb/F1ST55" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "insulin-like growth factor binding", "id": "GO:0005520", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005520", "evidence": [ { "database": "UniProtKB", "id": "F1ST55", "url": "https://www.uniprot.org/uniprotkb/F1ST55" } ], "pmid": "" }, { "name": "receptor ligand activity", "id": "GO:0048018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048018", "evidence": [ { "database": "UniProtKB", "id": "F1ST55", "url": "https://www.uniprot.org/uniprotkb/F1ST55" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST55" }, { "id": "PS51323", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51323" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IGFBP N-terminal", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 106, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1ST55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST55" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 152, "end_pos": 256, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1ST55", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST55" }, { "id": "PS51465", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51465" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Kazal-like", "eco_id": "ECO_0000259", "start_pos": 111, "end_pos": 150, "start_aa": "Val", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST57-1", "uniprot_ac": "F1ST57", "uniprot_id": "F1ST57_PIG", "mass": { "chemical_mass": 54929.0, "monoisotopic_mass": 54929.0 }, "refseq": { "ac": "XP_020921913", "name": "SH2 domain-containing adapter protein B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921913" }, "gene_names": [ { "name": "SHB", "type": "recommended", "evidence": [ { "id": "F1ST57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST57" } ] }, { "name": "SHB", "type": "synonym", "evidence": [ { "id": "XP_020921913", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921913" } ] } ], "protein_names": [ { "name": "SH2 domain containing adaptor protein B", "type": "synonym", "evidence": [ { "id": "F1ST57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST57/entry#names_and_taxonomy" } ] }, { "name": "SH2 domain-containing adapter protein B", "type": "synonym", "evidence": [ { "id": "XP_020921913", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921913" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST57", "url": "https://www.uniprot.org/uniprotkb/F1ST57" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SHB", "url": "https://www.uniprot.org/uniprotkb/F1ST57", "locus": { "chromosome": "1", "start_pos": 238681194, "end_pos": 238826429, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005358", "url": "https://www.ensembl.org/id/ENSSSCG00000005358" } ] } } ], "crossref": [ { "id": "F1ST57", "url": "https://alphafold.ebi.ac.uk/entry/F1ST57", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005358", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005358", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10389", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10389", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100153587", "url": "https://www.ncbi.nlm.nih.gov/gene/100153587", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100153587", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153587", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RIMTELQ", "url": "https://omabrowser.org/oma/group/RIMTELQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1ST57", "url": "https://www.orthodb.org/?gene=F1ST57", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15127", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15127", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15127:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15127:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-4420097", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4420097", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020921913", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921913", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1ST57", "url": "https://www.uniprot.org/uniprotkb/F1ST57", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST57-1", "url": "https://www.uniprot.org/uniprotkb/F1ST57-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKWLNKYFSLGNSKTKSPPQPPRPDYREQRRRGERPSQPPQAVPQAPAAASASCGTAAASCFSASSGSLPDDSGSTSDLIRAYRAQKERDFEDPYNGPGSSLRKLRAMCRLDYCGGGEPGGGQRAFSASSASGASGCCCASSGAGAAASSSSSSGSPHLYRSSSERRPATPAEVRYISPKHRLIKVESAAGGAGDPPGGACSGGRTWSPTACGGKKLLNKCGASATEESSAGKKDKVTIADDYSDPFDAKNDLKNKAGKGESAGYMEPYEAQRIMTEFQRQESVRSQHKGIQLYDTPYEPEGQSVDSDSESTVSPRLRESKLPQDDDRPADEYDQPWEWNRVTIPALAAQFNGNEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGERVDPSVPLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSRHDYSLSLKSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL", "length": 507, "header": "tr|F1ST57-1|F1ST57_PIG Isoform 1 of SH2 domain containing adaptor protein B OS=Sus scrofa OX=9823 GN=SHB PE=4 SV=3 CANONICAL=F1ST57-1" }, "isoforms": [ { "isoform_ac": "F1ST57-1", "url": "https://www.uniprot.org/uniprotkb/F1ST57/entry#F1ST57-1", "sequence": { "sequence": "MAKWLNKYFSLGNSKTKSPPQPPRPDYREQRRRGERPSQPPQAVPQAPAAASASCGTAAASCFSASSGSLPDDSGSTSDLIRAYRAQKERDFEDPYNGPGSSLRKLRAMCRLDYCGGGEPGGGQRAFSASSASGASGCCCASSGAGAAASSSSSSGSPHLYRSSSERRPATPAEVRYISPKHRLIKVESAAGGAGDPPGGACSGGRTWSPTACGGKKLLNKCGASATEESSAGKKDKVTIADDYSDPFDAKNDLKNKAGKGESAGYMEPYEAQRIMTEFQRQESVRSQHKGIQLYDTPYEPEGQSVDSDSESTVSPRLRESKLPQDDDRPADEYDQPWEWNRVTIPALAAQFNGNEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGERVDPSVPLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSRHDYSLSLKSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL", "length": 507, "header": "tr|F1ST57-1|F1ST57_PIG Isoform 1 of SH2 domain containing adaptor protein B OS=Sus scrofa OX=9823 GN=SHB PE=4 SV=3 CANONICAL=F1ST57-1" }, "locus": { "chromosome": "1", "start_pos": 238825800, "end_pos": 238681436, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005898.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005898.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005751.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005751.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST57", "url": "https://www.uniprot.org/uniprotkb/F1ST57" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100153587", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100153587", "resource": "KEGG Pathway" }, { "id": "R-SSC-4420097", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4420097", "resource": "Reactome", "description": "VEGFA-VEGFR2 Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZN31-1", "protein_name": "SH2 domain containing adaptor protein B", "gene_name": "Shb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKWLNKYFSLGNSKTKSPPQPPRPDYREQRRRGERREQPPQAVPQACSASSASCGSAAACFSASSGSLPDDSGSTSDLIRAYRAQKERDFEDPYNGPGSSLRKLRAMCRLDYCGGGGDPGGGQRAFTAAAGAAGCCCAAAGAGAAASSSSSSGSPHLYRSSSERRPATPAEVRYISPKHRLIKVESAGAAGDPPGGVCSGGRTWSPTTCGGKKLLNKCAAEETGAGQKDKVTIADDYSDPFDAKNDLKSKAGKGESAGYMEPYEAQRIMTEFQRQESVRSQHKGIQLYDTPYEPEGQSVDSDSESTVSLRLRESKLPQDDDRPADEYDQPWEWNRVTIPALAAQFNGNEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGERVDPTIPLEKQIWYHGAISRSDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMKLAKTKDKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL", "length": 501 }, "evidence": [ { "id": "F1ST57", "url": "https://omabrowser.org/oma/group/F1ST57/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BLY9-1", "protein_name": "SH2 domain containing adaptor protein B", "gene_name": "SHB", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAKWLNKYFSLGNSKTKSPPQPPRPDYREQRRRGERPSQPPQAVPQAPAAASASCGTAAASCFSASSGSLPDDSGSTSDLIRAYRAQKERDFEDPYNGPGSSLRKLRAMCRLDYCGGGEPGGSQRAFSASSASGAAGCCCASSGAGAAASSSSSSGSPHLYRSSSERRPATPAEVRYISPKHRLIKVESAAGCAGDPPGGACSGGRTWSPTACGGKKLLNKCGASAAEESGAGKKDKVTIADDYSDPFDAKNDLKSKTGKGESAGYMEPYEAQRIMTEFQRQESVRSQHKGIQLYDTPYEPEGQSVDSDSESTISPRLRESKLPQDDDRPADEYDQPWEWNRVTIPALAAQFNGSEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGERVDPAVPLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSRHDYSLSLKSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL", "length": 507 }, "evidence": [ { "id": "F1ST57", "url": "https://omabrowser.org/oma/group/F1ST57/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q15464-1", "protein_name": "SH2 domain-containing adapter protein B", "gene_name": "SHB", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKWLNKYFSLGNSKTKSPPQPPRPDYREQRRRGERPSQPPQAVPQASSAASASCGPATASCFSASSGSLPDDSGSTSDLIRAYRAQKERDFEDPYNGPGSSLRKLRAMCRLDYCGGSGEPGGVQRAFSASSASGAAGCCCASSGAGAAASSSSSSGSPHLYRSSSERRPATPAEVRYISPKHRLIKVESAAGGGAGDPLGGACAGGRTWSPTACGGKKLLNKCAASAAEESGAGKKDKVTIADDYSDPFDAKNDLKSKAGKGESAGYMEPYEAQRIMTEFQRQESVRSQHKGIQLYDTPYEPEGQSVDSDSESTVSPRLRESKLPQDDDRPADEYDQPWEWNRVTIPALAAQFNGNEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGERVDPAVPLEKQIWYHGAISRGDAENLLRLCKECSYLVRNSQTSKHDYSLSLRSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL", "length": 509 }, "evidence": [ { "id": "F1ST57", "url": "https://omabrowser.org/oma/group/F1ST57/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6PD21-1", "protein_name": "SH2 domain-containing adapter protein B", "gene_name": "Shb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKWLNKYFSLGNSKTKSPPQPPRPDYREQRRRGERREQPPQAVPQACSASSASCGSAAACFSASSGSLPDDSGSTSDLIRAYRAQKERDFEDPYNGPGSSLRKLRAMCRLDYCGGGGGGDPGGGQRAFTAAAGAAGCCCAAAGAGAAASSSSSSGSPHLYRSSSERRPTTPAEVRYISPKHRLIKVESASAAGDPPGGVCSGGRTWSPTTCGGKKLLNKCSAEETGAGQKDKVTIADDYSDPFDAKSDLKSKAGKGESAGYMEPYEAQRIMTEFQRQESVRSQHKGIQLYDTPYEPEGQSVDSDSESTVSLRLRESKLPQDDDRPADEYDQPWEWNRVTIPALAAQFNGNEKRQSSPSPSRDRRRQLRAPGGGFKPIKHGSPEFCGILGERVDPTIPLEKQIWYHGAISRSDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSNQGFMHMKLAKTKEKYVLGQNSPPFDSVPEVIHYYTTRKLPIKGAEHLSLLYPVAVRTL", "length": 503 }, "evidence": [ { "id": "F1ST57", "url": "https://omabrowser.org/oma/group/F1ST57/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "R4GGM0-1", "protein_name": "SH2 domain containing adaptor protein B", "gene_name": "SHB", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAKWLNKYFSLGNNKTKSPPQPPRPDYREKRNGAGGAPRPDGPPHLHRHQHHTSPGFPHRHLRDDTSELLRAYRAQKDRDFEDPYSGPGSSLRKLRALCRPEPCAPDEPGPAAPRAFSSASCGAAASAPAGSPLLARSQSERRPGTPPEVRYISPRHRLIRVEIGDGGRFGRGGEQLAASAPAKEKVLIADDYSDPFDAKSELNKMVKGENTGYMEPYEAQRIMTEFQKQEGMKTHQKNMQLYDTPYEPEGSGVESDSESVVSQRLRESKLPQDDDRPADEYDQPWEWNKVTIPALAAQFNGSEKRQASPSSSNDQRRQLRAPGRGFKPIKHGSPEFCGILGERIDPTVPLEKQIWYHGAISRTDAENLLRLCKECSYLVRNSQTSKHDYSLSLKSSQGFMHMKLTKTKEKYILGQNSPPFDSVPEVIHYYTTKKLPIKGAEHLSLLYPVAVRTL", "length": 455 }, "evidence": [ { "id": "F1ST57", "url": "https://omabrowser.org/oma/group/F1ST57/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phosphotyrosine residue binding", "id": "GO:0001784", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001784", "evidence": [ { "database": "UniProtKB", "id": "F1ST57", "url": "https://www.uniprot.org/uniprotkb/F1ST57" } ], "pmid": "" }, { "name": "signaling receptor complex adaptor activity", "id": "GO:0030159", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030159", "evidence": [ { "database": "UniProtKB", "id": "F1ST57", "url": "https://www.uniprot.org/uniprotkb/F1ST57" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1ST57", "url": "https://www.uniprot.org/uniprotkb/F1ST57" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1ST57", "url": "https://www.uniprot.org/uniprotkb/F1ST57" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "F1ST57", "url": "https://www.uniprot.org/uniprotkb/F1ST57" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1ST57-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 507, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1ST57-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1ST57" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST57", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST57" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 408, "end_pos": 502, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST66-1", "uniprot_ac": "F1ST66", "uniprot_id": "F1ST66_PIG", "mass": { "chemical_mass": 61130.0, "monoisotopic_mass": 61130.0 }, "refseq": { "ac": "XP_020921871", "name": "DDB1- and CUL4-associated factor 10 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921871" }, "gene_names": [ { "name": "DCAF10", "type": "recommended", "evidence": [ { "id": "F1ST66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST66" } ] }, { "name": "DCAF10", "type": "synonym", "evidence": [ { "id": "XP_020921871", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921871" } ] } ], "protein_names": [ { "name": "DDB1- and CUL4-associated factor 10", "type": "recommended", "evidence": [ { "id": "F1ST66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST66/entry#names_and_taxonomy" } ] }, { "name": "DDB1- and CUL4-associated factor 10 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020921871", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921871" } ] }, { "name": "WD repeat-containing protein 32", "type": "synonym", "evidence": [ { "id": "F1ST66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST66/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.", "evidence": [ { "database": "UniProtKB", "id": "F1ST66", "url": "https://www.uniprot.org/uniprotkb/F1ST66#function" }, { "database": "UniProtKB", "id": "ARBA00002614", "url": "https://www.uniprot.org/uniprotkb/ARBA00002614#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST66", "url": "https://www.uniprot.org/uniprotkb/F1ST66" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DCAF10", "url": "https://www.uniprot.org/uniprotkb/F1ST66", "locus": { "chromosome": "1", "start_pos": 238633462, "end_pos": 238567611, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005356", "url": "https://www.ensembl.org/id/ENSSSCG00000005356" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005356", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005356", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157661", "url": "https://www.ncbi.nlm.nih.gov/gene/100157661", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157661", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157661", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "STAHEDC", "url": "https://omabrowser.org/oma/group/STAHEDC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1ST66", "url": "https://www.orthodb.org/?gene=F1ST66", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14588", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14588", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14588:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14588:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020921871", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921871", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1ST66", "url": "https://www.uniprot.org/uniprotkb/F1ST66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST66-1", "url": "https://www.uniprot.org/uniprotkb/F1ST66-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFPFGPGSPGGDEAAGARAEEPAPHGRQGAAAGPLPSPPAPPQPGADAAPPPSPCGSPPRPCAPSLLPAGRAGELRQPGALESSAASAPGEPSPPSPPRRRPGPDCRAGRRYSLGAVLGVPGARLFGWLRERSLGRGLFVDPARDNFRTMTNLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRCTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHDLDLTKSLEVGSYPILRARRTTSSSDLTTSSSSSGPRVSGSPCHHSDSNSSSEKHMSRASQREGVSPRNSLEVLTPEVPGERDRGNCITSLQLHPKGWATLLRCSSNTDDQEWTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELIDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF", "length": 562, "header": "tr|F1ST66-1|F1ST66_PIG Isoform 1 of DDB1- and CUL4-associated factor 10 OS=Sus scrofa OX=9823 GN=DCAF10 PE=3 SV=3 CANONICAL=F1ST66-1" }, "isoforms": [ { "isoform_ac": "F1ST66-1", "url": "https://www.uniprot.org/uniprotkb/F1ST66/entry#F1ST66-1", "sequence": { "sequence": "MFPFGPGSPGGDEAAGARAEEPAPHGRQGAAAGPLPSPPAPPQPGADAAPPPSPCGSPPRPCAPSLLPAGRAGELRQPGALESSAASAPGEPSPPSPPRRRPGPDCRAGRRYSLGAVLGVPGARLFGWLRERSLGRGLFVDPARDNFRTMTNLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRCTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHDLDLTKSLEVGSYPILRARRTTSSSDLTTSSSSSGPRVSGSPCHHSDSNSSSEKHMSRASQREGVSPRNSLEVLTPEVPGERDRGNCITSLQLHPKGWATLLRCSSNTDDQEWTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELIDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF", "length": 562, "header": "tr|F1ST66-1|F1ST66_PIG Isoform 1 of DDB1- and CUL4-associated factor 10 OS=Sus scrofa OX=9823 GN=DCAF10 PE=3 SV=3 CANONICAL=F1ST66-1" }, "locus": { "chromosome": "1", "start_pos": 238628412, "end_pos": 238567692, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005896.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005896.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005749.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005749.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST66", "url": "https://www.uniprot.org/uniprotkb/F1ST66" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157661", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157661", "resource": "KEGG Pathway" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [ { "uniprot_canonical_ac": "A2AKB9-1", "protein_name": "DDB1- and CUL4-associated factor 10", "gene_name": "Dcaf10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFPFGPHSPGGDETAGAEEPPPLGGPAAASRPPSPAPRPASPQRGADAASPPPVAGSPRLPGGPAVSPAERAGEFAAPGALELSAATASASQAKLSPSSSPRRRSRPDWRAGGRSRQGLGAGLGGPGARLFGWLRERSLGRGLFVDPARDNFRTMTNLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRCTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHELDLTKSLEVGSYPILRARRTTSSSDLTTTSSSSGSRVSGSPCHHNDSNSTEKHMSRASQREGVSPRNSLEVLTPEVPGERDRGNCITSLQLHPKGWATLLRCSSNTDDQEWTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF", "length": 566 }, "evidence": [ { "id": "F1ST66", "url": "https://omabrowser.org/oma/group/F1ST66/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D4A8G6-1", "protein_name": "DDB1- and CUL4-associated factor 10", "gene_name": "Dcaf10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFPFGPHSPGGDGAAGAEEPPPLGGPAAASRPPSPAPRPASPQRGADAASPPPATGSPRLRGSPAVSPAERAGELAAPEALELSAAASQAELSPSSSPRRRSRPDCKAGSWSRQGLSAGLGGPGARLFGWLRERSLGRGLFVDPARDNFRTMTNLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRCTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHDLDLTKSLEVGSYPILRARRTTSSSDLTTSSSSSGSRVSGSPCHHNDSNSTEKHVSRASQREGVSPRNSLEVLTPEVPGERDRGNCITSLQLHPKGWATLLRCSSNTDDQEWTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF", "length": 563 }, "evidence": [ { "id": "F1ST66", "url": "https://omabrowser.org/oma/group/F1ST66/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MYV7-1", "protein_name": "DDB1- and CUL4-associated factor 10", "gene_name": "DCAF10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFPLGLRCPGGNRAAGAGAEEPASYRREAAAAGPLPSPPSPLQPRADAAPPPSPGGSPRSPCAPSEPPGGRAREFGLPGAPESSAASAQGDPSPPSPPRRPPGPDCRAGSRGQPCLKARLGGPGARLFGWLRERSLGRGLFVDPARDNFRTMTNLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRCTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHDLDLTKSLEVGSYPILRARRTTSSSDLTTLSSSSGPRVSGSPCHHSDSNSSSEKHMSRTSQREGISPRNSLEVLTPEVPGERDRGNCITSLQLHPKGWATLLRCSSNTDDQEWTCVYEFQEGAPVRPVAPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELIDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF", "length": 564 }, "evidence": [ { "id": "F1ST66", "url": "https://omabrowser.org/oma/group/F1ST66/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5QP82-1", "protein_name": "DDB1- and CUL4-associated factor 10", "gene_name": "DCAF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFPFGPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPRRPGAPSLSPAPRSGELGLPGAPESSTASAPGEPSPPSPPCRRPGPDCRAKSRGRHGLGAGLGGPGARLFGWLKERSLGRGLFVDPARDNFRTMTSLYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRYTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHDLDLTKSLEVGSYPILRARRTTSSSDLTTSSSSSGPRVSGSPCHHSDSNSSEKHMSRASQREGVSPRNSLEVVTPEVLGESDHGNCITSLQLHPKGWATLLRCSSNSDDEECTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF", "length": 559 }, "evidence": [ { "id": "F1ST66", "url": "https://omabrowser.org/oma/group/F1ST66/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NWH1-1", "protein_name": "DDB1- and CUL4-associated factor 10", "gene_name": "dcaf10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSSGHPSDNEEPRADLLREEEEEEEEEEDSDEDRGSTRPASPQATRECAGTQGSSRPEVTADGGTGSASGSGCRGSGACDSLFSWICRRKIRRGPYVDPARDHFRTMTRLYSSMSPAADSVNLSTQTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPVSSRHIKTLVEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNSKVCSLHGHASWVKNIEYDTHTRLLVTSGFDGNVITWDTNRFTEDGCPHKKFFHTRYLMRMRLTPDCSKMLISTSSGYLLILHDLDLTQSLEVGSYRILRARRPPLSTEGSSAGSRSGGPRHTIDNKNHPHREGLSPRNSLEVLTPEIPGERDRGNCITSLQLHPKGWATLLRCSSNMDDQEWTCVYEFQEGAPPRPPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRLICSPYGYGVRLLAFDENCAELVDCMPVRTAQLREVRSIYSHSDVVLTSKFSPTHCQFASGCLSGRVALYQPHF", "length": 508 }, "evidence": [ { "id": "F1ST66", "url": "https://omabrowser.org/oma/group/F1ST66/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Cul4-RING E3 ubiquitin ligase complex", "id": "GO:0080008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080008", "evidence": [ { "database": "UniProtKB", "id": "F1ST66", "url": "https://www.uniprot.org/uniprotkb/F1ST66" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 377, "end_pos": 379, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 377, "end_pos": 379 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST74-1", "uniprot_ac": "F1ST74", "uniprot_id": "F1ST74_PIG", "mass": { "chemical_mass": 47134.0, "monoisotopic_mass": 47134.0 }, "refseq": { "ac": "XP_020921806", "name": "DNA-directed RNA polymerase I subunit RPA49", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921806" }, "gene_names": [ { "name": "POLR1E", "type": "recommended", "evidence": [ { "id": "F1ST74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ] }, { "name": "POLR1E", "type": "synonym", "evidence": [ { "id": "XP_020921806", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921806" } ] } ], "protein_names": [ { "name": "DNA-directed RNA polymerase I subunit RPA49", "type": "synonym", "evidence": [ { "id": "XP_020921806", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921806" } ] }, { "name": "RNA polymerase I subunit E", "type": "synonym", "evidence": [ { "id": "F1ST74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST74/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLR1E", "url": "https://www.uniprot.org/uniprotkb/F1ST74", "locus": { "chromosome": "1", "start_pos": 238220524, "end_pos": 238197684, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005347", "url": "https://www.ensembl.org/id/ENSSSCG00000005347" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005347", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005347", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156445", "url": "https://www.ncbi.nlm.nih.gov/gene/100156445", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009668", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009668", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156445", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156445", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DVYPFDE", "url": "https://omabrowser.org/oma/group/DVYPFDE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1ST74", "url": "https://www.orthodb.org/?gene=F1ST74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14440", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14440", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06870", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06870", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5250924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73762", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73762", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73772", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73863", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73863", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020921806", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921806", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST74-1", "url": "https://www.uniprot.org/uniprotkb/F1ST74-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEVLPSARWLYCGDPEESQRALLVQFSNGKLQNPGNMRFTLYKSNDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDAEMFNMQPLFTDESVESESTLESQAKSFREKMDSCIEAFGTTKQKRALNSRRMNKVGSESLNRAVAKAAEDIIDSKGVTALVSDAIHSDLQDDSLYLPPCHADAAKPEDVYKFEDLLSPAEYDALQSPSEAFRNVTSEQILKMIEENSHCSFVIEALKSLPSNQESRDRQARCIWFLDTLIKFRAQKVIKRKSALGPGIPHVISTKLLKHFTCLTYNNGSLRNVISDSMKAKITAYVIILALHINDFQIDLTMLQRDLKLSEKRMMEIAKAMRLKISKRKVSLAAGREEDHKLGTLSIPLPPAQTSDRQSKRKRIS", "length": 419, "header": "tr|F1ST74-1|F1ST74_PIG Isoform 1 of RNA polymerase I subunit E OS=Sus scrofa OX=9823 GN=POLR1E PE=3 SV=3 CANONICAL=F1ST74-1" }, "isoforms": [ { "isoform_ac": "F1ST74-1", "url": "https://www.uniprot.org/uniprotkb/F1ST74/entry#F1ST74-1", "sequence": { "sequence": "MAAEVLPSARWLYCGDPEESQRALLVQFSNGKLQNPGNMRFTLYKSNDSTNPRKRSQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDAEMFNMQPLFTDESVESESTLESQAKSFREKMDSCIEAFGTTKQKRALNSRRMNKVGSESLNRAVAKAAEDIIDSKGVTALVSDAIHSDLQDDSLYLPPCHADAAKPEDVYKFEDLLSPAEYDALQSPSEAFRNVTSEQILKMIEENSHCSFVIEALKSLPSNQESRDRQARCIWFLDTLIKFRAQKVIKRKSALGPGIPHVISTKLLKHFTCLTYNNGSLRNVISDSMKAKITAYVIILALHINDFQIDLTMLQRDLKLSEKRMMEIAKAMRLKISKRKVSLAAGREEDHKLGTLSIPLPPAQTSDRQSKRKRIS", "length": 419, "header": "tr|F1ST74-1|F1ST74_PIG Isoform 1 of RNA polymerase I subunit E OS=Sus scrofa OX=9823 GN=POLR1E PE=3 SV=3 CANONICAL=F1ST74-1" }, "locus": { "chromosome": "1", "start_pos": 238219119, "end_pos": 238197748, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005886.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005886.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005740.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005740.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156445", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156445", "resource": "KEGG Pathway" }, { "id": "R-SSC-5250924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "resource": "Reactome", "description": "B-WICH complex positively regulates rRNA expression" }, { "id": "R-SSC-73762", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73762", "resource": "Reactome", "description": "RNA Polymerase I Transcription Initiation" }, { "id": "R-SSC-73772", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "resource": "Reactome", "description": "RNA Polymerase I Promoter Escape" }, { "id": "R-SSC-73863", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73863", "resource": "Reactome", "description": "RNA Polymerase I Transcription Termination" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X9P2-1", "protein_name": "RNA polymerase I subunit E", "gene_name": "POLR1E", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MATATWCYRGDPEEEQPALLVTFSNGQLQRPDAVRFSLYRSSEVANPRKRRRRILVSETERLSYVGNNFGSGAMKCNSLCRYFLGVLNKDTGQMEVYNAEIFNMQPLLSDNVIPDDTRDYQNKSYREKVDLCIEAFGTSKQKRALNSRRMNAVGNDIVSTAVTKAAADVIDAKGVTALIQDVAQDDEQNMSIFLPPCHEDADKPENVYKFEDILSPAEYEALQGPAAAFMNITPEEITKKTEEKSHCSFVLEELKFLPADEKSRDRKARCLWFLDLLIKFSFLKIIKKKHPMGPECPHIISRKLMKNFTSLTYNNGSVQNLISASLKTKIAAYVIALALHIKNFQTDLTVLQNDLKLHESRMMDIARAMRLKVSKAKGMPGLENDQNHKLGTLSLPLPVQKASGSQRKRKKMN", "length": 413 }, "evidence": [ { "id": "F1ST74", "url": "https://omabrowser.org/oma/group/F1ST74/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F7ESP7-1", "protein_name": "RNA polymerase I subunit E", "gene_name": "Polr1e", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATPDSPGMDGQTGDTETEVLQSARWQYCGEPDDRQKAVLVQFSNGKLQNPGNMRFTLYNSTDLVNPRQKCHRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDAEVFNMQPLFAEDSIEHGPPLENQNKTFRDKLDSCIEAFGSTKQKRSLNSRRMNKVGSESLNFTVAKAAESIIDTKGVSALVSDAMQDDLQNDSLYLPPCHADATKPEDVYRFEDILSPAEYDALESPSEAFRKVMSEDILKMVEENRSVVTGCWEWPRGVVENKLEFSARAAILYHCSFIIEMLKSLPADEVQRNRQARSIWFLDALLRFRAQKVIKGKSALGPGIPHIINTKLLKQFTCLTYNNGSLRNLISSSMKAKITAYAIILALHINNFQIDLTVLQRDLKLSEKRMIEIARAMRLKISKRKVSLADGREEDHRLGTLSVPLPPAQTSDRQSKRKKMS", "length": 462 }, "evidence": [ { "id": "F1ST74", "url": "https://omabrowser.org/oma/group/F1ST74/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01080-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA49", "gene_name": "RPA49", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSVKRSVSEIEIESVQDQPSVAVGSFFKGFRAPSDTTFDLYKKKKSEKDEFVLHGENERLEYEGYTDSSSQASNQYVVGLFNPEKKSIQLYKAPVLVSKVVSKSSKNLRGPKIKSKSDTRPSALRNALGEAFGTKKAKKAIADLERNRIDSDKLTDSAIDIVDSVRTASKDLPTRAQLDEITSNDRPTPLANIDATDVEQIYPIESIIPKKELQFIRVSSILKEADKEKKLELFPYQNNSKYVAKKLDSLTQPSQMTKLQLLYYLSLLLGVYENRRVNNKTKLLERLNSPPEILVDGILSRFTVIKPGQFGRSKDRSYFIDPQNEDKILCYILAIIMHLDNFIVEITPLAHELNLKPSKVVSLFRVLGAIVKGATVAQAEAFGIPKSTAASYKIATMKVPFKLPEMTRRGRGPRR", "length": 415 }, "evidence": [ { "id": "F1ST74", "url": "https://omabrowser.org/oma/group/F1ST74/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8K202-1", "protein_name": "DNA-directed RNA polymerase I subunit RPA49", "gene_name": "Polr1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATLESPGMDDQAGDTETEALQSARWLYCGEPDDRQKAVLVQFSNGKLQNPGDMRFTLYNSTDLVNPRQRSHRIVAAETDRLSYVGNNFGTGALKCNALCRHFVGILNKTSGQMEVYDAELFNMQPLFAGMGTEVIKLGGQHLYLLAFCQPSKNLAEAGDLLLSRHRQGHCIAVLLDDDAIEREPPLENQNKTFRDKLDSCIEAFGSTKQKRSLNSRRMNKVGSESLNLSVAKAAESIIDTKGVNALVSDAMQDDLQDGVLYLPPCYADAAKPEDVYRFEDILSPAEYDALESPSEAFRKVTSEDILKMIEENSHCSYVIEMLKSLPIDEVHRNRQARSIWFLDALIRFRAQKVIKGKRALGPGIPHIINTKLLKQFTCLTYNNGRLQNLISSSMRAKITSYAIILALHINNFQVDLTALQKDLKLSEKRMIEIAKAMRLKISKQKVSLADGREESHRLGTLSVPLPPAQNSDRQSKRRKMN", "length": 482 }, "evidence": [ { "id": "F1ST74", "url": "https://omabrowser.org/oma/group/F1ST74/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9GZS1-2", "protein_name": "DNA-directed RNA polymerase I subunit RPA49", "gene_name": "POLR1E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAEVLPSARWQYCGAPDGSQRAVLVQFSNGKLQSPGNMRFTLYENKDSTNPRKRNQRILAAETDRLSYVGNNFGTGALKCNTLCRHFVGILNKTSGQMEVYDAELFNMQPLFSDVSVESELALESQTKTYREKMDSCIEAFGTTKQKRALNTRRMNRVGNESLNRAVAKAAETIIDTKGVTALVSDAIHNDLQDDSLYLPPCYDDAAKPEDVYKFEDLLSPAEYEALQSPSEAFRNVTSEEILKMIEENSHCTFVIEALKSLPSDVESRDRQARCIWFLDTLIKFRAHRVVKRKSALGPGVPHIINTKLLKHFTCLTYNNGRLRNLISDSMKAKITAYVIILALHIHDFQIDLTVLQRDLKLSEKRMMEIAKAMRLKISKRRVSVAAGSEEDHKLGTLSLPLPPAQTSDRLAKRRKIT", "length": 419 }, "evidence": [ { "id": "F1ST74", "url": "https://omabrowser.org/oma/group/F1ST74/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9LVK6-1", "protein_name": "DNA binding / DNA-directed RNA polymerase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEGEEKNDYRNEEEDFNTPQQLQKKQRKGKKIATETEDENEEDKRVTLKVTQVAERPDRISPIVAYFSTGYDPCKVDPKTGKRVHETPKVTVYKHKDDSKKRIQVVVSPPGARVEFVGTNYTGEQAAMQTNTYRVGVFNREAKTLRILPVAHNKIIRLEPRVKAQETNEEEASGSAVVKELEELKTGERDRYNTKKAVTRDKKKRALYMGDDAATQKVLDGKLSELGVNTAALEGTSSTVARNIPPYNTAATTANEAYPLEKIIEKGDWSFLEDIYWLLQQETEAATEAYPVFVRNRLYRLRDIKDDMKKQTVCGAATLLTHLVKFKDRNSMNGYDSAKDHKMPDIFRQKFNSMFKDSESDRIPVDKINLLISYVLVLSLHVDNFMTDPEDIAKDLRISTVELRKHFLQLGCKFLKQNSTTVATLPTPLNFPEVNRRRRARK", "length": 442 }, "evidence": [ { "id": "F1ST74", "url": "https://omabrowser.org/oma/group/F1ST74/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ], "pmid": "" }, { "name": "RNA polymerase I general transcription initiation factor binding", "id": "GO:0001179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001179", "evidence": [ { "database": "UniProtKB", "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ], "pmid": "" }, { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ], "pmid": "" }, { "name": "RNA polymerase I complex", "id": "GO:0005736", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005736", "evidence": [ { "database": "UniProtKB", "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "transcription elongation by RNA polymerase I", "id": "GO:0006362", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006362", "evidence": [ { "database": "UniProtKB", "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ], "pmid": "" }, { "name": "RNA polymerase I preinitiation complex assembly", "id": "GO:0001188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001188", "evidence": [ { "database": "UniProtKB", "id": "F1ST74", "url": "https://www.uniprot.org/uniprotkb/F1ST74" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 237, "end_pos": 239, "annotation": "n_glycosylation_sequon" }, { "start_pos": 321, "end_pos": 323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 237, "end_pos": 239 }, { "start_pos": 321, "end_pos": 323 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 93, "end_pos": 95 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST82-1", "uniprot_ac": "F1ST82", "uniprot_id": "F1ST82_PIG", "mass": { "chemical_mass": 64924.0, "monoisotopic_mass": 64924.0 }, "refseq": { "ac": "XP_020921765", "name": "zinc finger CCHC domain-containing protein 7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921765" }, "gene_names": [ { "name": "ZCCHC7", "type": "recommended", "evidence": [ { "id": "F1ST82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ] }, { "name": "ZCCHC7", "type": "synonym", "evidence": [ { "id": "XP_020921765", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921765" } ] } ], "protein_names": [ { "name": "Zinc finger CCHC domain-containing protein 7", "type": "recommended", "evidence": [ { "id": "F1ST82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST82/entry#names_and_taxonomy" } ] }, { "name": "TRAMP-like complex RNA-binding factor ZCCHC7", "type": "synonym", "evidence": [ { "id": "F1ST82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST82/entry#names_and_taxonomy" } ] }, { "name": "zinc finger CCHC domain-containing protein 7", "type": "synonym", "evidence": [ { "id": "XP_020921765", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921765" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZCCHC7", "url": "https://www.uniprot.org/uniprotkb/F1ST82", "locus": { "chromosome": "1", "start_pos": 238068305, "end_pos": 237820363, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005346", "url": "https://www.ensembl.org/id/ENSSSCG00000005346" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005346", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005346", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520354", "url": "https://www.ncbi.nlm.nih.gov/gene/100520354", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051644", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051644", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520354", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520354", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1ST82", "url": "https://www.orthodb.org/?gene=F1ST82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46543", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46543", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46543:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46543:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921765", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921765", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST82-1", "url": "https://www.uniprot.org/uniprotkb/F1ST82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMFGGFETIEAYEDDLYREESSSELSVDSEVEFQLYSQVHYAQDLDNVIREEEHEENNSGNSESFGSKPNQKNLIILSDSEVIQLSDGSEVITLSDEDSIYKCKRKNFRDQAKEKTQGPPASLHSNELADQKCKRDVEKPQPGERSGAVQEVMIIEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCEKSLNEGVSSHSDLERQTGEDSVNWFISDKDIEAQIGNKRSSGRWTYRYYSANKNVTCRNCNKCGHLSKNCPFPQKVRPCCLCSERGHLQYACPARFCLDCSLPMSSAHRCLERPSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEGHYGHECTERRMFNQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHMEAADKRSHRGMRKSYASWRSNRWPQEKKETQKETMSRSSREREKHKKADRRHEVDEDFPRGPRVHSSSGKTQKPHKPFHHTSHYHKPREDKLPKEGKRGKHKKKESCLEDDSYDNLFFIKQRKKKSKL", "length": 557, "header": "tr|F1ST82-1|F1ST82_PIG Isoform 1 of Zinc finger CCHC domain-containing protein 7 OS=Sus scrofa OX=9823 GN=ZCCHC7 PE=4 SV=5 CANONICAL=F1ST82-1" }, "isoforms": [ { "isoform_ac": "F1ST82-1", "url": "https://www.uniprot.org/uniprotkb/F1ST82/entry#F1ST82-1", "sequence": { "sequence": "MMFGGFETIEAYEDDLYREESSSELSVDSEVEFQLYSQVHYAQDLDNVIREEEHEENNSGNSESFGSKPNQKNLIILSDSEVIQLSDGSEVITLSDEDSIYKCKRKNFRDQAKEKTQGPPASLHSNELADQKCKRDVEKPQPGERSGAVQEVMIIEVSSSEEEESTISESDNVESWMLLGCEVDDKDDDILLNLVGCEKSLNEGVSSHSDLERQTGEDSVNWFISDKDIEAQIGNKRSSGRWTYRYYSANKNVTCRNCNKCGHLSKNCPFPQKVRPCCLCSERGHLQYACPARFCLDCSLPMSSAHRCLERPSWRKRCDRCDMIGHYADACPEIWRQYHLTTKPGPPKKPKTPSGQSTLVYCYNCGQEGHYGHECTERRMFNQTFPTSPFIYYYDDKYEIRERDQRIKRKVKELQKNGDFPRQFKRPHMEAADKRSHRGMRKSYASWRSNRWPQEKKETQKETMSRSSREREKHKKADRRHEVDEDFPRGPRVHSSSGKTQKPHKPFHHTSHYHKPREDKLPKEGKRGKHKKKESCLEDDSYDNLFFIKQRKKKSKL", "length": 557, "header": "tr|F1ST82-1|F1ST82_PIG Isoform 1 of Zinc finger CCHC domain-containing protein 7 OS=Sus scrofa OX=9823 GN=ZCCHC7 PE=4 SV=5 CANONICAL=F1ST82-1" }, "locus": { "chromosome": "1", "start_pos": 238067447, "end_pos": 237825645, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005885.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005885.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005739.5", "url": "https://www.ensembl.org/id/ENSSSCP00000005739.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520354", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520354", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" }, { "name": "TRAMP complex", "id": "GO:0031499", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031499", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "nuclear polyadenylation-dependent rRNA catabolic process", "id": "GO:0071035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071035", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" }, { "name": "TRAMP-dependent tRNA surveillance pathway", "id": "GO:0071038", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071038", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" }, { "name": "nuclear polyadenylation-dependent snoRNA catabolic process", "id": "GO:0071036", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071036", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" }, { "name": "nuclear polyadenylation-dependent snRNA catabolic process", "id": "GO:0071037", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071037", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" }, { "name": "nuclear polyadenylation-dependent CUT catabolic process", "id": "GO:0071039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071039", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" }, { "name": "nuclear mRNA surveillance of mRNA 3'-end processing", "id": "GO:0071031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071031", "evidence": [ { "database": "UniProtKB", "id": "F1ST82", "url": "https://www.uniprot.org/uniprotkb/F1ST82" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 252, "end_pos": 254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 382, "end_pos": 384, "annotation": "n_glycosylation_sequon" }, { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST82", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST82" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCHC-type", "eco_id": "ECO_0000259", "start_pos": 255, "end_pos": 269, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 252, "end_pos": 254 }, { "start_pos": 382, "end_pos": 384 }, { "start_pos": 57, "end_pos": 59 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1ST94-1", "uniprot_ac": "F1ST94", "uniprot_id": "F1ST94_PIG", "mass": { "chemical_mass": 54457.0, "monoisotopic_mass": 54457.0 }, "refseq": {}, "gene_names": [ { "name": "GSDME", "type": "recommended", "evidence": [ { "id": "F1ST94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ] } ], "protein_names": [ { "name": "Gasdermin E", "type": "synonym", "evidence": [ { "id": "F1ST94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST94/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GSDME", "url": "https://www.uniprot.org/uniprotkb/F1ST94", "locus": { "chromosome": "18", "start_pos": 47583731, "end_pos": 47526797, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016716", "url": "https://www.ensembl.org/id/ENSSSCG00000016716" } ] } } ], "crossref": [ { "id": "F1ST94", "url": "https://alphafold.ebi.ac.uk/entry/F1ST94", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000016716", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016716", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR040460", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040460", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041263", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041263", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042377", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042377", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EMTNDCL", "url": "https://omabrowser.org/oma/group/EMTNDCL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1ST94", "url": "https://www.orthodb.org/?gene=F1ST94", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15207", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15207", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15207:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15207:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17708", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17708", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-111457", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111457", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-111458", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111458", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-111461", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111461", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620971", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620971", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5686938", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5686938", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1ST94-1", "url": "https://www.uniprot.org/uniprotkb/F1ST94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFAKATKNFLREVDTGGNLTAVSNLNDSDKLQLLSLVTKKRRFWCWQKPKYQFLSVTLGDVLTEDQILSPVVVESDFVKYEGRFENHTRGALKTALGKAKLTLGGKGFVESQSSFGTLRKQEVDLQQLIRDAQGRTIDLKNPVLQQVLERKNEVLCVLTQKIVTTQQCVISEHVQMEKCGVVGIQLKTVQVSVMDRGNISKGSNVVLEIPAPTTLAYGVIELYLRVDGQFEFCLLQEKHGGFQQTRESSCASLEPLPLLELGFWDMTDALQGASVVDEPLGVLKQVTWLLKRNVHPFAELPEPQQTALNDVLQEVLFDEEMLVVLEQVCDSVASSRLLPPLAGLGELKPSQQQQLMAFLQLAGCSVQGGVPDPEDVVSNRKLFSTAYLLVSALAEMPDNAAVLLGTCCKLQIIPTLCHLLYALSDEGMSDLEDPMLAPLKDAETLEIVQHLFALADINLEMLQSSVQATASKDPAVLPLILYISLNGLCALGRAH", "length": 495, "header": "tr|F1ST94-1|F1ST94_PIG Isoform 1 of Gasdermin E OS=Sus scrofa OX=9823 GN=GSDME PE=3 SV=3 CANONICAL=F1ST94-1" }, "isoforms": [ { "isoform_ac": "F1ST94-1", "url": "https://www.uniprot.org/uniprotkb/F1ST94/entry#F1ST94-1", "sequence": { "sequence": "MFAKATKNFLREVDTGGNLTAVSNLNDSDKLQLLSLVTKKRRFWCWQKPKYQFLSVTLGDVLTEDQILSPVVVESDFVKYEGRFENHTRGALKTALGKAKLTLGGKGFVESQSSFGTLRKQEVDLQQLIRDAQGRTIDLKNPVLQQVLERKNEVLCVLTQKIVTTQQCVISEHVQMEKCGVVGIQLKTVQVSVMDRGNISKGSNVVLEIPAPTTLAYGVIELYLRVDGQFEFCLLQEKHGGFQQTRESSCASLEPLPLLELGFWDMTDALQGASVVDEPLGVLKQVTWLLKRNVHPFAELPEPQQTALNDVLQEVLFDEEMLVVLEQVCDSVASSRLLPPLAGLGELKPSQQQQLMAFLQLAGCSVQGGVPDPEDVVSNRKLFSTAYLLVSALAEMPDNAAVLLGTCCKLQIIPTLCHLLYALSDEGMSDLEDPMLAPLKDAETLEIVQHLFALADINLEMLQSSVQATASKDPAVLPLILYISLNGLCALGRAH", "length": 495, "header": "tr|F1ST94-1|F1ST94_PIG Isoform 1 of Gasdermin E OS=Sus scrofa OX=9823 GN=GSDME PE=3 SV=3 CANONICAL=F1ST94-1" }, "locus": { "chromosome": "18", "start_pos": 47580478, "end_pos": 47535058, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000061973.3", "url": "https://www.ensembl.org/id/ENSSSCT00000061973.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000041192.1", "url": "https://www.ensembl.org/id/ENSSSCP00000041192.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-111457", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111457", "resource": "Reactome", "description": "Release of apoptotic factors from the mitochondria" }, { "id": "R-SSC-111458", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111458", "resource": "Reactome", "description": "Formation of apoptosome" }, { "id": "R-SSC-111461", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111461", "resource": "Reactome", "description": "Cytochrome c-mediated apoptotic response" }, { "id": "R-SSC-5620971", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620971", "resource": "Reactome", "description": "Pyroptosis" }, { "id": "R-SSC-5686938", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5686938", "resource": "Reactome", "description": "Regulation of TLR by endogenous ligand" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XFB5-1", "protein_name": "DFNA5, deafness associated tumor suppressor", "gene_name": "DFNA5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFAKATRNFVRETDSGGDLIPVSHLNASDKLQLLSLVTKRKKFWCWQKPKYHFLAVSLSDVLTEDKPIKPVIVESDFAKYMGKFEDVVQGSIETSFGKISLGAGAKGCVESQSSFGSLRKQEVDLQQLMKDVKDRMINLNSSLLQQVIERKREVLCILREKIITTQRCTISEHIQTEEKVSGLLGCTTKIVKVSVSDSGSMMKDSSVILEIPPATTIAYGVIELFIKCDGQFEFCLLNEQQGGFERENAEGSTSPHSVLFRDTSFLFHPDAVDNGMYSGAENPVPSHASLSVLKKDLSQLKAQFQPFVKLPEDKQRALYKSLCELLLHEETLTALEDVLDALCTGDKPDLKELKPAQQQDLADFLQLVGCRVQDELLLQNYHLQDEELLSAAHLLISAISELSDYTLVLLRACSDLQVVPALCCLPYIASADGTLALSSPSVATLTDRRRFDVAQRLFASANINLEKTETSVKAVTMREPRFFPLVLYVALCGLHSLGGTVEELF", "length": 505 }, "evidence": [ { "id": "F1ST94", "url": "https://omabrowser.org/oma/group/F1ST94/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BFC3-1", "protein_name": "Gasdermin E", "gene_name": "GSDME", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFAKATRNFLKEVDAGGNLIAVSNLNDSDKLQLLSLVTKKKRYWCWQRPKYQFLSVTLGDVLTEDQFLSPVVVESDFVKYEGKFENHVSGTLETALGKVKLNIGGKGLVESQSSFGTLRKQEVDLQQLIGDAQERTINLKNPVLQQVLERKNAVLCVLTQKIVTTQKCVISEHVQIEETCGGMVGIQTRTVQVSAMEDGNIIKDTNVVLEIPAPTTIAYGVIELYVRADGQFEFCLLQGKHGGFEQERRSNSVLLDPLPFREFVFWDMPDAGQGLPAQDKPLSVLKQATLLLERNFHPFMELPEQQQIALNDVLQAVLLDEELLVVLEQVCDDIVSSLSPSLVALGELKPSQKHNLTTFLRLVGCSVQGERLGSQDVVDNQKLFSTAFFLVSALAEMPDNAAALLGTCCKLQIIPLLYHLLRALSHDGVSDLEDPALAPLKDREKFGIVQRLFAATDINLERMQSSVKAASREDPNVLPLILYISLSGLCALGRAQ", "length": 496 }, "evidence": [ { "id": "F1ST94", "url": "https://omabrowser.org/oma/group/F1ST94/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1MAG0-1", "protein_name": "Gasdermin E", "gene_name": "Gsdme", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKATRNFLKEVDAGGDLISVSHLNDSDKLQLLSLVTKKKRYWCWQRPKYQFLSATLGDVLTEGHCLSPVVVESDFVKYESKCENHKSGTIGTVMGKVKLNVGGKGLVESQSSFGTLRKQEVDVQQLIQDAVGRTVNLDSLVLQQVLESRNEVLCVLTQKIVTTQKCVISEHVQSEETCGGMVGIQTKIVQVSAMEDGTITTDTNVMLEIPAATTIAYGIMELYVKKDGQFEFCLLQGKHGGFEQERKVDSVYLDPLAYREFAFLDMPDGGQGISSQDGPLRVLKQATLHLERSFRSFAVLPAQQQMALFCILQKILFDEELLRALEQVCDDVAGGLWSSQAILAMEELTGSQQQDLTAFLKLVGYRVQGEHPGPQDEVSNQKLFATAYFLVSALAEMPDNATVFLGTCCKLHVIPSLCHLLHALSDDSVCDFQDPTLAPLRDTERFGIVQRLFASADIALERMQFSAKATILKDSCMFPLILHITLSGLYTLSKEHEEHLFQSEVHATSQD", "length": 513 }, "evidence": [ { "id": "F1ST94", "url": "https://omabrowser.org/oma/group/F1ST94/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O60443-1", "protein_name": "Gasdermin-E", "gene_name": "GSDME", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFAKATRNFLREVDADGDLIAVSNLNDSDKLQLLSLVTKKKRFWCWQRPKYQFLSLTLGDVLIEDQFPSPVVVESDFVKYEGKFANHVSGTLETALGKVKLNLGGSSRVESQSSFGTLRKQEVDLQQLIRDSAERTINLRNPVLQQVLEGRNEVLCVLTQKITTMQKCVISEHMQVEEKCGGIVGIQTKTVQVSATEDGNVTKDSNVVLEIPAATTIAYGVIELYVKLDGQFEFCLLRGKQGGFENKKRIDSVYLDPLVFREFAFIDMPDAAHGISSQDGPLSVLKQATLLLERNFHPFAELPEPQQTALSDIFQAVLFDDELLMVLEPVCDDLVSGLSPTVAVLGELKPRQQQDLVAFLQLVGCSLQGGCPGPEDAGSKQLFMTAYFLVSALAEMPDSAAALLGTCCKLQIIPTLCHLLRALSDDGVSDLEDPTLTPLKDTERFGIVQRLFASADISLERLKSSVKAVILKDSKVFPLLLCITLNGLCALGREHS", "length": 496 }, "evidence": [ { "id": "F1ST94", "url": "https://omabrowser.org/oma/group/F1ST94/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z2D3-1", "protein_name": "Gasdermin-E", "gene_name": "Gsdme", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAKATRNFLKEVDAGGDLISVSHLNDSDKLQLLSLVTKKKRYWCWQRPKYQILSATLEDVLTEGHCLSPVVVESDFVKYESKCENHKSGAIGTVVGKVKLNVGGKGVVESHSSFGTLRKQEVDVQQLIQDAVKRTVNMDNLVLQQVLESRNEVLCVLTQKIMTTQKCVISEHVQSEETCGGMVGIQTKTIQVSATEDGTVTTDTNVVLEIPAATTIAYGIMELFVKQDGQFEFCLLQGKHGGFEHERKLDSVYLDPLAYREFAFLDMLDGGQGISSQDGPLRVVKQATLHLERSFHPFAVLPAQQQRALFCVLQKILFDEELLRALEQVCDDVAGGLWSSQAVLAMEELTDSQQQDLTAFLQLVGYRIQGEHPGPQDEVSNQKLFATAYFLVSALAEMPDNATVFLGTCCKLHVISSLCCLLHALSDDSVCDFHNPTLAPLRDTERFGIVQRLFASADIALERMQFSAKATILKDSCIFPLILHITLSGLSTLSKEHEEELCQSGHATGQD", "length": 512 }, "evidence": [ { "id": "F1ST94", "url": "https://omabrowser.org/oma/group/F1ST94/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "phosphatidylinositol-4,5-bisphosphate binding", "id": "GO:0005546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005546", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "wide pore channel activity", "id": "GO:0022829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022829", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "cardiolipin binding", "id": "GO:1901612", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901612", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "negative regulation of cell population proliferation", "id": "GO:0008285", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008285", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "positive regulation of MAPK cascade", "id": "GO:0043410", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043410", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "positive regulation of intrinsic apoptotic signaling pathway", "id": "GO:2001244", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2001244", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "cellular response to tumor necrosis factor", "id": "GO:0071356", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071356", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "cellular response to virus", "id": "GO:0098586", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098586", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "positive regulation of immune response to tumor cell", "id": "GO:0002839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002839", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" }, { "name": "pyroptotic cell death", "id": "GO:0141201", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141201", "evidence": [ { "database": "UniProtKB", "id": "F1ST94", "url": "https://www.uniprot.org/uniprotkb/F1ST94" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 26, "end_pos": 28, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1ST94-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 495, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1ST94-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1ST94" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1ST94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST94" }, { "id": "PF17708", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17708" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Gasdermin PUB", "eco_id": "ECO_0000259", "start_pos": 280, "end_pos": 467, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1ST94", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1ST94" }, { "id": "PF04598", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04598" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Gasdermin pore forming", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 244, "start_aa": "Met", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 }, { "start_pos": 198, "end_pos": 200 }, { "start_pos": 26, "end_pos": 28 }, { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STA1-1", "uniprot_ac": "F1STA1", "uniprot_id": "F1STA1_PIG", "mass": { "chemical_mass": 34885.0, "monoisotopic_mass": 34885.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100514941", "type": "recommended", "evidence": [ { "id": "F1STA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STA1" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1STA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STA1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100514941", "url": "https://www.uniprot.org/uniprotkb/F1STA1", "locus": {} } ], "crossref": [ { "id": "F1STA1", "url": "https://alphafold.ebi.ac.uk/entry/F1STA1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15430", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15430", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STA1-1", "url": "https://www.uniprot.org/uniprotkb/F1STA1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "QEGNSQKVVGFTLLGLSAHPKLEKMFFVLILLTYLVILLGNGLLILVTILDPRLHTPMYFFLGNLSFLDICYTTSSVPLILDSFLTPRKTIPFPACAMQMFLSFAMGATECVLLGMMAFDRYVAICNPLRYPIVMSKAVYVPMAVSSWAAGSTTATVQTSLAMQLPFCGDNIINHFTCEILAVLKLACADISINVISMGVANVIFLGVPVLFISFSYMFIIITILKIPSAEGRKKAFSTCSAHLTVVVIFYGTILFMYGKPKSKDPLGADKQDLADKLTSLFYGVVTPMLNPIIYSLRNKDVKAAMRNLVTQKCFTQ", "length": 317, "header": "tr|F1STA1-1|F1STA1_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100514941 PE=3 SV=3 CANONICAL=F1STA1-1" }, "isoforms": [ { "isoform_ac": "F1STA1-1", "url": "https://www.uniprot.org/uniprotkb/F1STA1/entry#F1STA1-1", "sequence": { "sequence": "QEGNSQKVVGFTLLGLSAHPKLEKMFFVLILLTYLVILLGNGLLILVTILDPRLHTPMYFFLGNLSFLDICYTTSSVPLILDSFLTPRKTIPFPACAMQMFLSFAMGATECVLLGMMAFDRYVAICNPLRYPIVMSKAVYVPMAVSSWAAGSTTATVQTSLAMQLPFCGDNIINHFTCEILAVLKLACADISINVISMGVANVIFLGVPVLFISFSYMFIIITILKIPSAEGRKKAFSTCSAHLTVVVIFYGTILFMYGKPKSKDPLGADKQDLADKLTSLFYGVVTPMLNPIIYSLRNKDVKAAMRNLVTQKCFTQ", "length": 317, "header": "tr|F1STA1-1|F1STA1_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100514941 PE=3 SV=3 CANONICAL=F1STA1-1" }, "locus": { "chromosome": "1", "start_pos": 236729290, "end_pos": 236727629, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005874.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005874.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005728.3", "url": "https://www.ensembl.org/id/ENSSSCP00000005728.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "detection of chemical stimulus involved in sensory perception of smell", "id": "GO:0050911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050911", "evidence": [ { "database": "UniProtKB", "id": "F1STA1", "url": "https://www.uniprot.org/uniprotkb/F1STA1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STA1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 317, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STA1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STA1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STA1" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 295, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STA9-1", "uniprot_ac": "F1STA9", "uniprot_id": "F1STA9_PIG", "mass": { "chemical_mass": 35945.0, "monoisotopic_mass": 35945.0 }, "refseq": { "ac": "XP_020921570", "name": "olfactory receptor 2S2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921570" }, "gene_names": [ { "name": "LOC100152003", "type": "recommended", "evidence": [ { "id": "F1STA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STA9" } ] }, { "name": "LOC100152003", "type": "synonym", "evidence": [ { "id": "XP_020921570", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921570" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1STA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STA9/entry#names_and_taxonomy" } ] }, { "name": "olfactory receptor 2S2-like", "type": "synonym", "evidence": [ { "id": "XP_020921570", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921570" } ] } ], "function": [ { "annotation": "Odorant receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1STA9", "url": "https://www.uniprot.org/uniprotkb/F1STA9#function" }, { "database": "UniProtKB", "id": "ARBA00002936", "url": "https://www.uniprot.org/uniprotkb/ARBA00002936#function" } ] }, { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1STA9", "url": "https://www.uniprot.org/uniprotkb/F1STA9#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STA9", "url": "https://www.uniprot.org/uniprotkb/F1STA9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100152003", "url": "https://www.uniprot.org/uniprotkb/F1STA9", "locus": {} } ], "crossref": [ { "id": "F1STA9", "url": "https://alphafold.ebi.ac.uk/entry/F1STA9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000005326", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005326", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152003", "url": "https://www.ncbi.nlm.nih.gov/gene/100152003", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152003", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152003", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ISFMYLK", "url": "https://omabrowser.org/oma/group/ISFMYLK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STA9", "url": "https://www.orthodb.org/?gene=F1STA9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921570", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921570", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STA9", "url": "https://www.uniprot.org/uniprotkb/F1STA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STA9-1", "url": "https://www.uniprot.org/uniprotkb/F1STA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQANQTAVAEYVLLGLHEHHNLELVLFVLCLGIYSINVLGNTLLFGLNLLDPRLHSPMYFFLSNLSLMDLCGTSSFVPLMLVNFLKTQSTISFPGCALQMYLTLALGSTECLLLAVMACDRYVAICQPLRYSALMSRQTCAWMAALSWGTGFANSLLHSIVTWSLPFCGHNVINHFFCEILAVLKLACEDISLNALLTLTTTVLTLAPLLLICLSYVFILAAILQVPSAAGRRKAFSTCSAHLTVVVVFYGTICFMYFKSRSKDPTMDKILALFYGLVTPSLNPIIYSLRNAEVKAATIALLRGDLLSRKMSHFSCRSLTLLGRTG", "length": 327, "header": "tr|F1STA9-1|F1STA9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100152003 PE=3 SV=2 CANONICAL=F1STA9-1" }, "isoforms": [ { "isoform_ac": "F1STA9-1", "url": "https://www.uniprot.org/uniprotkb/F1STA9/entry#F1STA9-1", "sequence": { "sequence": "MGQANQTAVAEYVLLGLHEHHNLELVLFVLCLGIYSINVLGNTLLFGLNLLDPRLHSPMYFFLSNLSLMDLCGTSSFVPLMLVNFLKTQSTISFPGCALQMYLTLALGSTECLLLAVMACDRYVAICQPLRYSALMSRQTCAWMAALSWGTGFANSLLHSIVTWSLPFCGHNVINHFFCEILAVLKLACEDISLNALLTLTTTVLTLAPLLLICLSYVFILAAILQVPSAAGRRKAFSTCSAHLTVVVVFYGTICFMYFKSRSKDPTMDKILALFYGLVTPSLNPIIYSLRNAEVKAATIALLRGDLLSRKMSHFSCRSLTLLGRTG", "length": 327, "header": "tr|F1STA9-1|F1STA9_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100152003 PE=3 SV=2 CANONICAL=F1STA9-1" }, "locus": { "chromosome": "1", "start_pos": 236587251, "end_pos": 236586271, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005865.3", "url": "https://www.ensembl.org/id/ENSSSCT00000005865.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005720.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005720.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STA9", "url": "https://www.uniprot.org/uniprotkb/F1STA9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152003", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152003", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1STA9", "url": "https://www.uniprot.org/uniprotkb/F1STA9" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1STA9", "url": "https://www.uniprot.org/uniprotkb/F1STA9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1STA9", "url": "https://www.uniprot.org/uniprotkb/F1STA9" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1STA9", "url": "https://www.uniprot.org/uniprotkb/F1STA9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STA9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 327, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STA9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STA9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STA9" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 5, "end_pos": 7 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STB5-1", "uniprot_ac": "F1STB5", "uniprot_id": "F1STB5_PIG", "mass": { "chemical_mass": 42413.0, "monoisotopic_mass": 42413.0 }, "refseq": { "ac": "XP_003480593", "name": "RAB6A-GEF complex partner protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480593" }, "gene_names": [ { "name": "RGP1", "type": "recommended", "evidence": [ { "id": "F1STB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ] }, { "name": "RGP1", "type": "synonym", "evidence": [ { "id": "XP_003480593", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480593" } ] } ], "protein_names": [ { "name": "RAB6A-GEF complex partner protein 2", "type": "synonym", "evidence": [ { "id": "XP_003480593", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480593" } ] }, { "name": "RGP1 homolog, RAB6A GEF complex partner 1", "type": "synonym", "evidence": [ { "id": "F1STB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STB5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RGP1", "url": "https://www.uniprot.org/uniprotkb/F1STB5", "locus": { "chromosome": "1", "start_pos": 236477683, "end_pos": 236468320, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000005320", "url": "https://www.ensembl.org/id/ENSSSCG00000005320" } ] } } ], "crossref": [ { "id": "ENSSSCG00000005320", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000005320", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100154802", "url": "https://www.ncbi.nlm.nih.gov/gene/100154802", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR014848", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014848", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100154802", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154802", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CQVRCVQ", "url": "https://omabrowser.org/oma/group/CQVRCVQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STB5", "url": "https://www.orthodb.org/?gene=F1STB5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12507", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12507", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08737", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08737", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6811438", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811438", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003480593", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003480593", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STB5-1", "url": "https://www.uniprot.org/uniprotkb/F1STB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPESQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVQFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGAPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPTEQPEPVTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI", "length": 391, "header": "tr|F1STB5-1|F1STB5_PIG Isoform 1 of RGP1 homolog, RAB6A GEF complex partner 1 OS=Sus scrofa OX=9823 GN=RGP1 PE=4 SV=2 CANONICAL=F1STB5-1" }, "isoforms": [ { "isoform_ac": "F1STB5-1", "url": "https://www.uniprot.org/uniprotkb/F1STB5/entry#F1STB5-1", "sequence": { "sequence": "MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPESQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVQFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGAPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPTEQPEPVTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI", "length": 391, "header": "tr|F1STB5-1|F1STB5_PIG Isoform 1 of RGP1 homolog, RAB6A GEF complex partner 1 OS=Sus scrofa OX=9823 GN=RGP1 PE=4 SV=2 CANONICAL=F1STB5-1" }, "locus": { "chromosome": "1", "start_pos": 236472424, "end_pos": 236468767, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000005859.5", "url": "https://www.ensembl.org/id/ENSSSCT00000005859.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000005714.2", "url": "https://www.ensembl.org/id/ENSSSCP00000005714.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 310, "start_aa": "Thr", "end_pos": 310, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr310", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100154802", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100154802", "resource": "KEGG Pathway" }, { "id": "R-SSC-6811438", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811438", "resource": "Reactome", "description": "Intra-Golgi traffic" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0C4DHA5-1", "protein_name": "RAB6A-GEF complex partner protein 2", "gene_name": "Rgp1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MIEIKAKLLRADSAIYATGERVQCLIEFTHKVFSDEPAASQAVHNANEARSQENLAWASAQLHCYRKTSYSTSAGDRAAELTEMIGRTALDAVTQAPGEVIVATKPKILFCDLRLQPGETKMYFFNEFIPRDGPPTYRGHNIRYFYKITIATQRVKSKVQTLAVPIRVLPIPIISRPDELPVTVETNEELAPTNPFLEKREISELEISWHHLKNVTARRAPKFYRISNKRGFVGRFCLFKPAYKLGEDIVGSLDFDPGVNPRKVRCVQFSVKLQQQELSIRPQPVQNHQLQSQSSTGDDVSSMNSFDMASIASGVLADNLHKSATSASSKVKEAPEPTGKLSTISTSHQVCYATLQTQVVVPIPLHVTPTFRTDLVDVRWRLHFEFVTTTLIDFGIPNPESGELKAPSEMPVETMVWNLPVTVYAANPLQIYAPNQTFNLLIK", "length": 443 }, "evidence": [ { "id": "F1STB5", "url": "https://omabrowser.org/oma/group/F1STB5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "A0A8I5ZYV2-1", "protein_name": "RGP1 homolog, RAB6A GEF complex partner 1", "gene_name": "Rgp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTGVAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI", "length": 391 }, "evidence": [ { "id": "F1STB5", "url": "https://omabrowser.org/oma/group/F1STB5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AAA9SZG5-1", "protein_name": "RGP1 homolog, RAB6A GEF complex partner 1", "gene_name": "RGP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPESQTVLLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPVEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLTELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGAPSVSHITHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI", "length": 391 }, "evidence": [ { "id": "F1STB5", "url": "https://omabrowser.org/oma/group/F1STB5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BHT7-1", "protein_name": "RAB6A-GEF complex partner protein 2", "gene_name": "Rgp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPTEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVHFPQDEAVAPSSPFLEEDDSGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGTGVAPSVSHVTHARHQESCLHTTRTSFSLPIPLCSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPLEQPEPATWTGPEQVPVDTFSWDLPIKVLPTSPTLVSYAAPGPSTSSITI", "length": 391 }, "evidence": [ { "id": "F1STB5", "url": "https://omabrowser.org/oma/group/F1STB5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q92546-1", "protein_name": "RAB6A-GEF complex partner protein 2", "gene_name": "RGP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTITI", "length": 391 }, "evidence": [ { "id": "F1STB5", "url": "https://omabrowser.org/oma/group/F1STB5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "Ric1-Rgp1 guanyl-nucleotide exchange factor complex", "id": "GO:0034066", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034066", "evidence": [ { "database": "UniProtKB", "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ], "pmid": "" }, { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "retrograde transport, endosome to Golgi", "id": "GO:0042147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042147", "evidence": [ { "database": "UniProtKB", "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ], "pmid": "" }, { "name": "negative regulation of protein catabolic process", "id": "GO:0042177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042177", "evidence": [ { "database": "UniProtKB", "id": "F1STB5", "url": "https://www.uniprot.org/uniprotkb/F1STB5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 215, "end_pos": 217, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 310 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 215, "end_pos": 217 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STC1-1", "uniprot_ac": "F1STC1", "uniprot_id": "F1STC1_PIG", "mass": { "chemical_mass": 32679.0, "monoisotopic_mass": 32679.0 }, "refseq": {}, "gene_names": [ { "name": "RPIA", "type": "recommended", "evidence": [ { "id": "F1STC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STC1" } ] } ], "protein_names": [ { "name": "Ribose-5-phosphate isomerase", "type": "recommended", "evidence": [ { "id": "F1STC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STC1/entry#names_and_taxonomy" } ] }, { "name": "5.3.1.6", "type": "synonym", "evidence": [ { "id": "F1STC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STC1/entry#names_and_taxonomy" } ] }, { "name": "Phosphoriboisomerase", "type": "synonym", "evidence": [ { "id": "F1STC1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STC1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STC1", "url": "https://www.uniprot.org/uniprotkb/F1STC1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPIA", "url": "https://www.uniprot.org/uniprotkb/F1STC1", "locus": { "chromosome": "3", "start_pos": 57355975, "end_pos": 57386939, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008207", "url": "https://www.ensembl.org/id/ENSSSCG00000008207" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008207", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008207", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01398", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01398", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR004788", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004788", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020672", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020672", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ACHVQEK", "url": "https://omabrowser.org/oma/group/ACHVQEK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11934", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11934", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11934:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11934:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06026", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06026", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-71336", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-71336", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73843", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73843", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "14657", "url": "https://www.rhea-db.org/rhea/14657", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1STC1", "url": "https://www.uniprot.org/uniprotkb/F1STC1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STC1-1", "url": "https://www.uniprot.org/uniprotkb/F1STC1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRPGPFSTLYGRVLAPLPGRAGGAASGGGGNSWGVLGSHVQPPGRAQFGVGSTSTSSGDANSVCPAPSTMSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLICIPTSFQARQLILQHGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGNASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAYVPVSRTVTQKFGGVIELRMAVNKAGPVVTDNGNFILDWKFDRVHKWSEVNTAITMIPGVVDTGLFINMAERVYFGMQDGSVNMREKPF", "length": 306, "header": "tr|F1STC1-1|F1STC1_PIG Isoform 1 of Ribose-5-phosphate isomerase OS=Sus scrofa OX=9823 GN=RPIA PE=3 SV=1 CANONICAL=F1STC1-1" }, "isoforms": [ { "isoform_ac": "F1STC1-1", "url": "https://www.uniprot.org/uniprotkb/F1STC1/entry#F1STC1-1", "sequence": { "sequence": "MQRPGPFSTLYGRVLAPLPGRAGGAASGGGGNSWGVLGSHVQPPGRAQFGVGSTSTSSGDANSVCPAPSTMSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLICIPTSFQARQLILQHGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGNASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAYVPVSRTVTQKFGGVIELRMAVNKAGPVVTDNGNFILDWKFDRVHKWSEVNTAITMIPGVVDTGLFINMAERVYFGMQDGSVNMREKPF", "length": 306, "header": "tr|F1STC1-1|F1STC1_PIG Isoform 1 of Ribose-5-phosphate isomerase OS=Sus scrofa OX=9823 GN=RPIA PE=3 SV=1 CANONICAL=F1STC1-1" }, "locus": { "chromosome": "3", "start_pos": 57386900, "end_pos": 57356835, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008988.6", "url": "https://www.ensembl.org/id/ENSSSCT00000008988.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008762.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008762.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STC1", "url": "https://www.uniprot.org/uniprotkb/F1STC1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-71336", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-71336", "resource": "Reactome", "description": "Pentose phosphate pathway" }, { "id": "R-SSC-73843", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73843", "resource": "Reactome", "description": "5-Phosphoribose 1-diphosphate biosynthesis" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A7L6-1", "protein_name": "Ribose-5-phosphate isomerase", "gene_name": "Rpia", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRPGPFSTLYGRVLAPLPGRAGGAASGGGGNNWGLSGSHVQLPGRTQSETRGDKGGSSAGGPAPSTMSKAEEAKKLASHTAVENHVKNNQVLGIGSGSTIVHAVQRIAERVKQENLDLICIPTSFQARQLILQYGLTLSDLDQHPEIDLAIDGADEVDAELNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGDRWHKGIPIEVIPMAYVPVSRAVTQKFGGEVELRMAVNKAGPVVTDNGNFILDWKFDRVHKWGEVNTAIKMTPGVVDTGLFINMAERVYFGMQDGSVNVREKPF", "length": 303 }, "evidence": [ { "id": "F1STC1", "url": "https://omabrowser.org/oma/group/F1STC1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G5E534-1", "protein_name": "Ribose-5-phosphate isomerase", "gene_name": "RPIA", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQRPGPFSTLYGRVLAPLPGRAGGAASGGGGNSWGVPGSHVQLPGRSQFGAGSTSTGVRETNIVCPGPSAMSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVEQENLKLVCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGNASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAYVPVSRTVTQKFGGVIELRMAVNKAGPVVTDNGNFILDWKFDRVHKWSEVNIAIKMIPGVVDTGLFINMAERVYFGMQDGSVNMREKPF", "length": 306 }, "evidence": [ { "id": "F1STC1", "url": "https://omabrowser.org/oma/group/F1STC1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47968-1", "protein_name": "Ribose-5-phosphate isomerase", "gene_name": "Rpia", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQRPGPFSTLYGRVLAPLPGRAGGAASGGGGNNWGLSGSHVQLPGRAHSETRGDKGGSSAGGPAPSTMSKAEEAKKLASHTAVENHVKNNQVLGIGSGSTIVHAVQRIAERVKQENLDLICIPTSFQARQLILQYGLTLSDLDQHPEIDLAIDGADEVDAELNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGDRWHKGIPIEVIPMAYVPVSRAVAQKFGGEVELRMAVNKAGPVVTDNGNFILDWKFDRVHKWSEVNTAIKMTPGVVDTGLFINMAERVYFGMQDGSVNVREKPF", "length": 303 }, "evidence": [ { "id": "F1STC1", "url": "https://omabrowser.org/oma/group/F1STC1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P49247-1", "protein_name": "Ribose-5-phosphate isomerase", "gene_name": "RPIA", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQRPGPFSTLYGRVLAPLPGRAGGAASGGGGNSWDLPGSHVRLPGRAQSGTRGGAGNTSTSCGDSNSICPAPSTMSKAEEAKKLAGRAAVENHVRNNQVLGIGSGSTIVHAVQRIAERVKQENLNLVCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAYVPVSRAVSQKFGGVVELRMAVNKAGPVVTDNGNFILDWKFDRVHKWSEVNTAIKMIPGVVDTGLFINMAERVYFGMQDGSVNMREKPFC", "length": 311 }, "evidence": [ { "id": "F1STC1", "url": "https://omabrowser.org/oma/group/F1STC1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q12189-1", "protein_name": "Ribose-5-phosphate isomerase", "gene_name": "RKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAAGVPKIDALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQLHAEKVDIRQGGSAKAGPVVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDGSVEVTEK", "length": 258 }, "evidence": [ { "id": "F1STC1", "url": "https://omabrowser.org/oma/group/F1STC1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q8MLS2-1", "protein_name": "ribose-5-phosphate isomerase", "gene_name": "Rpi", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDDIALDAAKKTAARTAVDQWVTEDTKILGIGSGSTVVYAVQRIAERVWKEGELTDLICVPSSYQARHLILDYNLNLGDLDRNPNIDVAIDGADEVDRHMVLIKGGGGCLLQEKVVASCAKHFIVVADYTKNSIRLGEQWCRGVPIEVAPMAYVPIKLHIEALFGGEASLRMAKVKAGPIVTDNGNFLLDWKFIANREYDWDEVNRAITLIPGVLETGLFVNMAHKCYYGMANGSVKVQNK", "length": 241 }, "evidence": [ { "id": "F1STC1", "url": "https://omabrowser.org/oma/group/F1STC1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9S726-1", "protein_name": "Probable ribose-5-phosphate isomerase 3, chloroplastic", "gene_name": "RPI3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLSFVSSSHLTLRTPSIALRSTGSSPRTSVSFSVKAQSVALSQDDLKKLAAEKAVEAIKPGMVLGLGTGSTAAFAVDQIGKLLSSGELYDIVGIPTSKRTEEQARSLGIPLVGLDTHPRIDLAIDGADEVDPNLDLVKGRGGALLREKMVEAVADKFIVVADDTKLVTGLGGSGLAMPVEVVQFCWNFNLIRLQDLFKEFGCESKLRVDGDGKPYVTDNSNYIIDLYFKTPLKDGFAAAKEIGKFQGVVEHGLFLGMATSVIIAGKNGVEVMTK", "length": 276 }, "evidence": [ { "id": "F1STC1", "url": "https://omabrowser.org/oma/group/F1STC1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ribose-5-phosphate isomerase activity", "id": "GO:0004751", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004751", "evidence": [ { "database": "UniProtKB", "id": "F1STC1", "url": "https://www.uniprot.org/uniprotkb/F1STC1" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1STC1", "url": "https://www.uniprot.org/uniprotkb/F1STC1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "D-ribose metabolic process", "id": "GO:0006014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006014", "evidence": [ { "database": "UniProtKB", "id": "F1STC1", "url": "https://www.uniprot.org/uniprotkb/F1STC1" } ], "pmid": "" }, { "name": "pentose-phosphate shunt, non-oxidative branch", "id": "GO:0009052", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009052", "evidence": [ { "database": "UniProtKB", "id": "F1STC1", "url": "https://www.uniprot.org/uniprotkb/F1STC1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STC1", "url": "https://www.uniprot.org/uniprotkb/F1STC1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1STC1", "url": "https://www.uniprot.org/uniprotkb/F1STC1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14657", "name": "", "equation": "aldehydo-D-ribose 5-phosphate = D-ribulose 5-phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "14657", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14657" } ] }, { "id": "R-SSC-177784", "name": "RPIA isomerizes ribose 5-phosphate to D-ribulose 5-phosphate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-177784", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-177784" } ] }, { "id": "R-SSC-71306", "name": "RPIA isomerizes D-ribulose 5-phosphate to ribose 5-phosphate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [ "R-ALL-29732" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-71306", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-71306" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-29732", "participant_name": "RU5P [cytosol]", "crossref": [ { "id": "58121", "database": "ChEBI", "url": "" }, { "id": "ZINC000001532567", "database": "ZINC", "url": "" }, { "id": "C00199", "database": "COMPOUND", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STE8-1", "uniprot_ac": "F1STE8", "uniprot_id": "F1STE8_PIG", "mass": { "chemical_mass": 131244.0, "monoisotopic_mass": 131244.0 }, "refseq": {}, "gene_names": [ { "name": "EIF5B", "type": "recommended", "evidence": [ { "id": "F1STE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ] } ], "protein_names": [ { "name": "Eukaryotic translation initiation factor 5B", "type": "recommended", "evidence": [ { "id": "F1STE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STE8/entry#names_and_taxonomy" } ] }, { "name": "3.6.5.3", "type": "synonym", "evidence": [ { "id": "F1STE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STE8/entry#names_and_taxonomy" } ] }, { "name": "Translation initiation factor IF-2", "type": "synonym", "evidence": [ { "id": "F1STE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STE8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EIF5B", "url": "https://www.uniprot.org/uniprotkb/F1STE8", "locus": { "chromosome": "3", "start_pos": 54861758, "end_pos": 54905810, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008180", "url": "https://www.ensembl.org/id/ENSSSCG00000008180" } ] } } ], "crossref": [ { "id": "F1STE8", "url": "https://alphafold.ebi.ac.uk/entry/F1STE8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008180", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008180", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01887", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01887", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03703", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03703", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015760", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015760", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029459", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029459", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036925", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036925", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR43381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43381:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43381:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00009", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00009", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11987", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11987", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14578", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14578", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STE8-1", "url": "https://www.uniprot.org/uniprotkb/F1STE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VGWSQKQNQECLLCFHLSAKDDIDLDALAAEIEGAGAAKEQEPQKSKGKKKKEKKRQDFDEDDILKELEELSWEAQGIKADRETAAVKPTENNEDESTSKQDKKKKGQKGKKQSFEDNDSEELEDKDSKSKKTAKPKVEMYSASDDDDDFNKVSKKAKGKAQKSNKKWDGSEEDEADSKRIKERARVHSSGESGDESDEFLPSRKGQKKNQKNKPGPNVESGNEDDDSSFKIKTVAQKKAEKKERERKKRDEEKAKLRKLKEKEELESGKKDQSKPKDSQRKTEEEAVKSKVILDSGAAPAPEEKGETPAAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPSKDSLPKKRPIYEDKKKKKTPQQLENKVSEPVDLSASVEVVEQGEAEKEETPPPVEPEEEEETEDAGLDDWEAMASDEETETEGNTVHIEVKENPEEEEEEEEEEEEEEESEEEEEEEGESEGSEADEEDEKVSDEKDAGKTLDKKPSKEVSSESEYDSDDDRTKEERAYDKAKRRIEKRRLEHSKNVNTEKLRAPVICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIKNFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKSKKCPFIVALNKIDRLYDWKKSPDTDVAVTLKKQKKNTKDEFEERAKAIIVEFAQQGLNAALFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKALPGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQASTLGSLEALLEFLKTSEVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQFIFNSRDPIVMGVTVEAGQVKQGTPMCVPSKNVSSVAVLLKRVSSWEFPLWDSG", "length": 1158, "header": "tr|F1STE8-1|F1STE8_PIG Isoform 1 of Eukaryotic translation initiation factor 5B OS=Sus scrofa OX=9823 GN=EIF5B PE=1 SV=5 CANONICAL=F1STE8-1" }, "isoforms": [ { "isoform_ac": "F1STE8-1", "url": "https://www.uniprot.org/uniprotkb/F1STE8/entry#F1STE8-1", "sequence": { "sequence": "VGWSQKQNQECLLCFHLSAKDDIDLDALAAEIEGAGAAKEQEPQKSKGKKKKEKKRQDFDEDDILKELEELSWEAQGIKADRETAAVKPTENNEDESTSKQDKKKKGQKGKKQSFEDNDSEELEDKDSKSKKTAKPKVEMYSASDDDDDFNKVSKKAKGKAQKSNKKWDGSEEDEADSKRIKERARVHSSGESGDESDEFLPSRKGQKKNQKNKPGPNVESGNEDDDSSFKIKTVAQKKAEKKERERKKRDEEKAKLRKLKEKEELESGKKDQSKPKDSQRKTEEEAVKSKVILDSGAAPAPEEKGETPAAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPSKDSLPKKRPIYEDKKKKKTPQQLENKVSEPVDLSASVEVVEQGEAEKEETPPPVEPEEEEETEDAGLDDWEAMASDEETETEGNTVHIEVKENPEEEEEEEEEEEEEEESEEEEEEEGESEGSEADEEDEKVSDEKDAGKTLDKKPSKEVSSESEYDSDDDRTKEERAYDKAKRRIEKRRLEHSKNVNTEKLRAPVICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIKNFDRENVRIPGMLIIDTPGHESFSNLRNRGSSLCDIAILVVDIMHGLEPQTIESINLLKSKKCPFIVALNKIDRLYDWKKSPDTDVAVTLKKQKKNTKDEFEERAKAIIVEFAQQGLNAALFYENKDPRTFVSLVPTSAHTGDGMGSLIYLLVELTQTMLSKRLAHCEELRAQVMEVKALPGMGTTIDVILINGRLKEGDTIIVPGVEGPIVTQIRGLLLPPPMKELRVKNQYEKHKEVEAAQGVKILGKDLEKTLAGLPLLVAYKEDEIPVLKDELIHELKQTLNAIKLEEKGVYVQASTLGSLEALLEFLKTSEVPYAGINIGPVHKKDVMKASVMLEHDPQYAVILAFDVRIERDAQEMADSLGVRIFSAEIIYHLFDAFTKYRQDYKKQKQEEFKHIAVFPCKIKILPQFIFNSRDPIVMGVTVEAGQVKQGTPMCVPSKNVSSVAVLLKRVSSWEFPLWDSG", "length": 1158, "header": "tr|F1STE8-1|F1STE8_PIG Isoform 1 of Eukaryotic translation initiation factor 5B OS=Sus scrofa OX=9823 GN=EIF5B PE=1 SV=5 CANONICAL=F1STE8-1" }, "locus": { "chromosome": "3", "start_pos": 54905810, "end_pos": 54866803, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008959.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008959.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008733.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008733.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" }, { "name": "tRNA binding", "id": "GO:0000049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000049", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" }, { "name": "translation initiation factor activity", "id": "GO:0003743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003743", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "translational initiation", "id": "GO:0006413", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006413", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" }, { "name": "regulation of translational initiation", "id": "GO:0006446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006446", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" }, { "name": "ribosome assembly", "id": "GO:0042255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042255", "evidence": [ { "database": "UniProtKB", "id": "F1STE8", "url": "https://www.uniprot.org/uniprotkb/F1STE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1136, "end_pos": 1138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 118, "end_pos": 120, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-72671", "name": "eIF5B:GTP is hydrolyzed and released", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-72671", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72671" } ] }, { "id": "R-SSC-72672", "name": "The 60S subunit joins the translation initiation complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-72672", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72672" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STE8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1158, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STE8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STE8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STE8" }, { "id": "PS51722", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51722" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tr-type G", "eco_id": "ECO_0000259", "start_pos": 634, "end_pos": 851, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1136, "end_pos": 1138 }, { "start_pos": 118, "end_pos": 120 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STF9-1", "uniprot_ac": "F1STF9", "uniprot_id": "F1STF9_PIG", "mass": { "chemical_mass": 88524.0, "monoisotopic_mass": 88524.0 }, "refseq": { "ac": "XP_020942826", "name": "neuronal PAS domain-containing protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942826" }, "gene_names": [ { "name": "NPAS2", "type": "recommended", "evidence": [ { "id": "F1STF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ] }, { "name": "NPAS2", "type": "synonym", "evidence": [ { "id": "XP_020942826", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942826" } ] } ], "protein_names": [ { "name": "Neuronal PAS domain protein 2", "type": "synonym", "evidence": [ { "id": "F1STF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STF9/entry#names_and_taxonomy" } ] }, { "name": "neuronal PAS domain-containing protein 2", "type": "synonym", "evidence": [ { "id": "XP_020942826", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942826" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NPAS2", "url": "https://www.uniprot.org/uniprotkb/F1STF9", "locus": { "chromosome": "3", "start_pos": 53298811, "end_pos": 53490574, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008171", "url": "https://www.ensembl.org/id/ENSSSCG00000008171" } ] } } ], "crossref": [ { "id": "F1STF9", "url": "https://alphafold.ebi.ac.uk/entry/F1STF9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008171", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008171", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00130", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00130", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19737", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19737", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521893", "url": "https://www.ncbi.nlm.nih.gov/gene/100521893", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001067", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001067", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001610", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001610", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013767", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013767", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047230", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047230", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521893", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521893", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1STF9", "url": "https://www.orthodb.org/?gene=F1STF9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46055:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46055:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00989", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00989", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942826", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942826", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STF9-1", "url": "https://www.uniprot.org/uniprotkb/F1STF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTTDGSILYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVYKMLSSHMLVTDSPSPEYLKSDNDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNEPSPSCNGFDSALSRPCRVPLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYAEVRVERRQELALEDPPLEAVHPSALKDKGSSLEPQQHFNALDVGTAGLNTSHSPSASSRSSHKSSRTAMSEPPSTPSKLRSDTSTTALPRSAPELPGPGLNQAAPMPAPLPAPSSCDLTQQLLPQTVLQSSPAPMAQFSAQLSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFNSAQQRSGPGPQPQLVASPQLPGQMAPAQATGQHLLRESSVIAIQGPKPVRGSQMMQGNSLTPQFSSTAAVLPPALSLTTPASTSQDASQCQPSPDFSHDRQLRLLLSQPIQPMMPGSCDARQPSEVGRAARQVKYPQSQAVFQNPDVHTTSSSASTPVLLMGLHPSFAASQPSPLKPAQTQQQPHFLQVQAPTSLHSERQDSLLLSTYSPQPGTLGYPPPPAARPTRRVSSLAESSGLQQPPR", "length": 796, "header": "tr|F1STF9-1|F1STF9_PIG Isoform 1 of Neuronal PAS domain protein 2 OS=Sus scrofa OX=9823 GN=NPAS2 PE=4 SV=2 CANONICAL=F1STF9-1" }, "isoforms": [ { "isoform_ac": "F1STF9-1", "url": "https://www.uniprot.org/uniprotkb/F1STF9/entry#F1STF9-1", "sequence": { "sequence": "MDEDEKDRAKRASRNKSEKKRRDQFNVLIKELSSMLPGNTRKMDKTTVLEKVIGFLQKHNEVSAQTEICDIQQDWKPSFLSNEEFTQLMLEALDGFIIAVTTDGSILYVSDSITPLLGHLPSDVMDQNLLNFLPEQEHSEVYKMLSSHMLVTDSPSPEYLKSDNDLEFYCHLLRGSLNPKEFPTYEYIKFVGNFRSYNNEPSPSCNGFDSALSRPCRVPLGKEVCFIATVRLATPQFLKEMCIVDEPLEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLELLARCHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYYITYHQWNSKPEFIVCTHSVVSYAEVRVERRQELALEDPPLEAVHPSALKDKGSSLEPQQHFNALDVGTAGLNTSHSPSASSRSSHKSSRTAMSEPPSTPSKLRSDTSTTALPRSAPELPGPGLNQAAPMPAPLPAPSSCDLTQQLLPQTVLQSSPAPMAQFSAQLSMFQTIKDQLEQRTRILQANIRWQQEELHKIQEQLCLVQDSNVQMFLQQPAVSLSFNSAQQRSGPGPQPQLVASPQLPGQMAPAQATGQHLLRESSVIAIQGPKPVRGSQMMQGNSLTPQFSSTAAVLPPALSLTTPASTSQDASQCQPSPDFSHDRQLRLLLSQPIQPMMPGSCDARQPSEVGRAARQVKYPQSQAVFQNPDVHTTSSSASTPVLLMGLHPSFAASQPSPLKPAQTQQQPHFLQVQAPTSLHSERQDSLLLSTYSPQPGTLGYPPPPAARPTRRVSSLAESSGLQQPPR", "length": 796, "header": "tr|F1STF9-1|F1STF9_PIG Isoform 1 of Neuronal PAS domain protein 2 OS=Sus scrofa OX=9823 GN=NPAS2 PE=4 SV=2 CANONICAL=F1STF9-1" }, "locus": { "chromosome": "3", "start_pos": 53406729, "end_pos": 53300051, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008948.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008948.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008722.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008722.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 429, "start_aa": "Thr", "end_pos": 429, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr429", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521893", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521893", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "CLOCK-BMAL transcription complex", "id": "GO:1990513", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990513", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "response to redox state", "id": "GO:0051775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051775", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "DNA damage response", "id": "GO:0006974", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006974", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "positive regulation of DNA repair", "id": "GO:0045739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045739", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "circadian regulation of gene expression", "id": "GO:0032922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032922", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" }, { "name": "Hsp90 protein binding", "id": "GO:0051879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051879", "evidence": [ { "database": "UniProtKB", "id": "F1STF9", "url": "https://www.uniprot.org/uniprotkb/F1STF9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 403, "end_pos": 405, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STF9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 796, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STF9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STF9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STF9" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 59, "start_aa": "Ala", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1STF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STF9" }, { "id": "PS50112", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50112" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PAS", "eco_id": "ECO_0000259", "start_pos": 82, "end_pos": 145, "start_aa": "Asn", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 429 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 }, { "start_pos": 403, "end_pos": 405 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STG2-1", "uniprot_ac": "F1STG2", "uniprot_id": "F1STG2_PIG", "mass": { "chemical_mass": 55482.0, "monoisotopic_mass": 55482.0 }, "refseq": { "ac": "XP_003124932", "name": "CCR4-NOT transcription complex subunit 11", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124932" }, "gene_names": [ { "name": "CNOT11", "type": "recommended", "evidence": [ { "id": "F1STG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG2" } ] }, { "name": "CNOT11", "type": "synonym", "evidence": [ { "id": "XP_003124932", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124932" } ] } ], "protein_names": [ { "name": "CCR4-NOT transcription complex subunit 11", "type": "recommended", "evidence": [ { "id": "F1STG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG2/entry#names_and_taxonomy" } ] }, { "name": "CCR4-NOT transcription complex subunit 11", "type": "synonym", "evidence": [ { "id": "XP_003124932", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124932" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STG2", "url": "https://www.uniprot.org/uniprotkb/F1STG2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CNOT11", "url": "https://www.uniprot.org/uniprotkb/F1STG2", "locus": { "chromosome": "3", "start_pos": 53062965, "end_pos": 53081441, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008167", "url": "https://www.ensembl.org/id/ENSSSCG00000008167" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008167", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008167", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519595", "url": "https://www.ncbi.nlm.nih.gov/gene/100519595", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019312", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019312", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519595", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519595", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PDHSVQW", "url": "https://omabrowser.org/oma/group/PDHSVQW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STG2", "url": "https://www.orthodb.org/?gene=F1STG2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15975", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15975", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15975:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15975:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10155", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10155", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27642", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27642", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-429947", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429947", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6804115", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804115", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003124932", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124932", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STG2", "url": "https://www.uniprot.org/uniprotkb/F1STG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STG2-1", "url": "https://www.uniprot.org/uniprotkb/F1STG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGGGASAASGRLFTAAEQRGTREGAGSASRCGPGVSGSGSGRGGAGVPGPGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHICEDELAWLNPTEPDHTIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGEAPSETKMSK", "length": 512, "header": "tr|F1STG2-1|F1STG2_PIG Isoform 1 of CCR4-NOT transcription complex subunit 11 OS=Sus scrofa OX=9823 GN=CNOT11 PE=1 SV=3 CANONICAL=F1STG2-1" }, "isoforms": [ { "isoform_ac": "F1STG2-1", "url": "https://www.uniprot.org/uniprotkb/F1STG2/entry#F1STG2-1", "sequence": { "sequence": "MPGGGASAASGRLFTAAEQRGTREGAGSASRCGPGVSGSGSGRGGAGVPGPGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHICEDELAWLNPTEPDHTIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGEAPSETKMSK", "length": 512, "header": "tr|F1STG2-1|F1STG2_PIG Isoform 1 of CCR4-NOT transcription complex subunit 11 OS=Sus scrofa OX=9823 GN=CNOT11 PE=1 SV=3 CANONICAL=F1STG2-1" }, "locus": { "chromosome": "3", "start_pos": 53081242, "end_pos": 53065470, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008944.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008944.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008718.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008718.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 180, "start_aa": "Thr", "end_pos": 180, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr180", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STG2", "url": "https://www.uniprot.org/uniprotkb/F1STG2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519595", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519595", "resource": "KEGG Pathway" }, { "id": "R-SSC-429947", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-429947", "resource": "Reactome", "description": "Deadenylation of mRNA" }, { "id": "R-SSC-6804115", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6804115", "resource": "Reactome", "description": "TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PEY3-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPGGGGSPAEAGGEAGGGGGAAGGRMSLSPKELTSLLGIVSEEAGGSTFEGLSSAFHHYFGKAEHFRLGSVLVLLLQQPDLLPSPAQRLTALYLLWEMYRTEPLAANPFAAVFAHLLNPAPERGGDEAERTPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIAAMDVGNMAQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHICEDELAWLNPIEPDHTIQWDKSMCVKNSTGVEIKRIMAKAFKSPLTSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGENPSETKTSK", "length": 473 }, "evidence": [ { "id": "F1STG2", "url": "https://omabrowser.org/oma/group/F1STG2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A4QP78-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "cnot11", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLAPKDLSNLLGIMSEDACSSSFEQLSSAFHHCFGKAEHFGVGSVLVMLLQQPDLLPSAPQRLTALYLLWEMYRTEPLAANPFAAVFAHLLNPSSAAEEQEKTLSGFLPPITLPEKFFLSQLMLAPPRELFKKTPRQVSCMDITSTPQTIDISGLQLALAERQSELPTQSKASFPSLLSDPDPDSSNSGFDSSVANQITESLVTGPRPPLESHFRPEFIRPTPPLLVCEDELCWLNPCEPEHRVQWDRSMCVRNGTGVEIKRIMAKAFKSPLSAAQQTQLLGELEKDLKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMSSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDNGETPAEGKTSK", "length": 445 }, "evidence": [ { "id": "F1STG2", "url": "https://omabrowser.org/oma/group/F1STG2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B0BNA9-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "Cnot11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPGGGASTASGRLLSADPRGAREAAAFRSGPAGSSGGRGGAGGPGSGSGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSAFDSSVASRITESLVSGPKPPIESHFRPEFIRPPPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGETPSETKVSK", "length": 504 }, "evidence": [ { "id": "F1STG2", "url": "https://omabrowser.org/oma/group/F1STG2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BHL0-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPGGGASASSGRLLTAAEQRGTREAAGSASRSGPGGSGSGGRGGAGVPGPGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHVCEDELAWLNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGETPAETKVSK", "length": 511 }, "evidence": [ { "id": "F1STG2", "url": "https://omabrowser.org/oma/group/F1STG2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9CWN7-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "Cnot11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPGGGASTASGRLLSSADPRGAREAAAFRSGPAGSSGGRGGAGGPGPGIGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASRITESLVSGPKPPIESHFRPEFIRPPPPLHICEDELAWLNPTEPEHAIQWDRSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGETPSETKISK", "length": 505 }, "evidence": [ { "id": "F1STG2", "url": "https://omabrowser.org/oma/group/F1STG2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UKZ1-1", "protein_name": "CCR4-NOT transcription complex subunit 11", "gene_name": "CNOT11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPGGGASAASGRLLTAAEQRGSREAAGSASRSGFGGSGGGRGGASGPGSGSGGPGGPAGRMSLTPKELSSLLSIISEEAGGGSTFEGLSTAFHHYFSKADHFRLGSVLVMLLQQPDLLPSAAQRLTALYLLWEMYRTEPLAANPFAASFAHLLNPAPPARGGQEPDRPPLSGFLPPITPPEKFFLSQLMLAPPRELFKKTPRQIALMDVGNMGQSVDISGLQLALAERQSELPTQSKASFPSILSDPDPDSSNSGFDSSVASQITEALVSGPKPPIESHFRPEFIRPPPPLHICEDELAWLNPTEPDHAIQWDKSMCVKNSTGVEIKRIMAKAFKSPLSSPQQTQLLGELEKDPKLVYHIGLTPAKLPDLVENNPLVAIEMLLKLMQSSQITEYFSVLVNMDMSLHSMEVVNRLTTAVDLPPEFIHLYISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTLDTGETPSETKMSK", "length": 510 }, "evidence": [ { "id": "F1STG2", "url": "https://omabrowser.org/oma/group/F1STG2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1STG2", "url": "https://www.uniprot.org/uniprotkb/F1STG2" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STG2", "url": "https://www.uniprot.org/uniprotkb/F1STG2" } ], "pmid": "" }, { "name": "CCR4-NOT complex", "id": "GO:0030014", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030014", "evidence": [ { "database": "UniProtKB", "id": "F1STG2", "url": "https://www.uniprot.org/uniprotkb/F1STG2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1STG2", "url": "https://www.uniprot.org/uniprotkb/F1STG2" } ], "pmid": "" }, { "name": "regulatory ncRNA-mediated gene silencing", "id": "GO:0031047", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031047", "evidence": [ { "database": "UniProtKB", "id": "F1STG2", "url": "https://www.uniprot.org/uniprotkb/F1STG2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 322, "end_pos": 324, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STG2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG2" }, { "id": "PF10155", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10155" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCR4-NOT transcription complex subunit 11 C-terminal", "eco_id": "ECO_0000259", "start_pos": 373, "end_pos": 497, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 180 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 322, "end_pos": 324 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STG3-1", "uniprot_ac": "F1STG3", "uniprot_id": "F1STG3_PIG", "mass": { "chemical_mass": 30813.0, "monoisotopic_mass": 30813.0 }, "refseq": { "ac": "XP_003124922", "name": "protein CREG2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124922" }, "gene_names": [ { "name": "CREG2", "type": "recommended", "evidence": [ { "id": "F1STG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG3" } ] }, { "name": "CREG2", "type": "synonym", "evidence": [ { "id": "XP_003124922", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124922" } ] } ], "protein_names": [ { "name": "Cellular repressor of E1A stimulateds 2", "type": "synonym", "evidence": [ { "id": "F1STG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG3/entry#names_and_taxonomy" } ] }, { "name": "protein CREG2", "type": "synonym", "evidence": [ { "id": "XP_003124922", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124922" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STG3", "url": "https://www.uniprot.org/uniprotkb/F1STG3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CREG2", "url": "https://www.uniprot.org/uniprotkb/F1STG3", "locus": { "chromosome": "3", "start_pos": 52977924, "end_pos": 52918844, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008166", "url": "https://www.ensembl.org/id/ENSSSCG00000008166" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008166", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008166", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517088", "url": "https://www.ncbi.nlm.nih.gov/gene/100517088", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055343", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055343", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517088", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517088", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HASSWGC", "url": "https://omabrowser.org/oma/group/HASSWGC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STG3", "url": "https://www.orthodb.org/?gene=F1STG3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13343", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13343", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13343:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13343:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13883", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13883", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003124922", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124922", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STG3", "url": "https://www.uniprot.org/uniprotkb/F1STG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STG3-1", "url": "https://www.uniprot.org/uniprotkb/F1STG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGRRGQRPGHCLCWLLCCVLLSPAAGYVIVSSVSWAVTNEVDEELDSASTEETLPTMLEDSGSIWQRSFPASAHKEDAHLPPPVGAAGARPPPEPPGMFSYRREGGARLRPGTARFLAHASAWGCLATVSAHEKMPGLPFGNCLPISDGPFNNSTGIPFFYVTPKDPVVADLLKNPMASLLLPESEGEFCRKNIVDPEDPRCARLTLTGQMVAVSPEEVEFAKQAVFSRHPVMRKWPRQYEWFFMKLKIEHIWLQKWYGGVADISQEEYFKATPRKA", "length": 278, "header": "tr|F1STG3-1|F1STG3_PIG Isoform 1 of Cellular repressor of E1A stimulateds 2 OS=Sus scrofa OX=9823 GN=CREG2 PE=3 SV=2 CANONICAL=F1STG3-1" }, "isoforms": [ { "isoform_ac": "F1STG3-1", "url": "https://www.uniprot.org/uniprotkb/F1STG3/entry#F1STG3-1", "sequence": { "sequence": "MSGRRGQRPGHCLCWLLCCVLLSPAAGYVIVSSVSWAVTNEVDEELDSASTEETLPTMLEDSGSIWQRSFPASAHKEDAHLPPPVGAAGARPPPEPPGMFSYRREGGARLRPGTARFLAHASAWGCLATVSAHEKMPGLPFGNCLPISDGPFNNSTGIPFFYVTPKDPVVADLLKNPMASLLLPESEGEFCRKNIVDPEDPRCARLTLTGQMVAVSPEEVEFAKQAVFSRHPVMRKWPRQYEWFFMKLKIEHIWLQKWYGGVADISQEEYFKATPRKA", "length": 278, "header": "tr|F1STG3-1|F1STG3_PIG Isoform 1 of Cellular repressor of E1A stimulateds 2 OS=Sus scrofa OX=9823 GN=CREG2 PE=3 SV=2 CANONICAL=F1STG3-1" }, "locus": { "chromosome": "3", "start_pos": 52972862, "end_pos": 52918855, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008943.4", "url": "https://www.ensembl.org/id/ENSSSCT00000008943.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008717.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008717.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 164, "start_aa": "Thr", "end_pos": 164, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr164", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STG3", "url": "https://www.uniprot.org/uniprotkb/F1STG3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517088", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517088", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MRE4-1", "protein_name": "Cellular repressor of E1A stimulateds 2", "gene_name": "CREG2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRRRGRRPGPRLSWLLWCGALLSPAAGYVIVSSVSWAVTNEVDEELDGASTEETLPALLGDSGSLWQRSFPASAHKEDAHLPPPEGAARARPPPAPPGMFSYPREGGARLRPGIARFLAHASAWGCLATVSAHEKIPGLPFGTCLPISDGPFDNSTGIPFFYVTPKDLLVADLMKNPMASLLLPESEGEFCRKNIVDPEDPRCARLTLTGRMVAVSPEEIEFAKQAMFSRHPVMRKWPRPYEWFFMKMKVEHIWLQKWYGGVADISREEYFRAVPRKA", "length": 279 }, "evidence": [ { "id": "F1STG3", "url": "https://omabrowser.org/oma/group/F1STG3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2U8T7-1", "protein_name": "Cellular repressor of E1A stimulateds 2", "gene_name": "CREG2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAAWCWWLPALLWGVAGGYVVLSSVSWPLPEAGGAADELHSSSTEEALPGLLEEAGGLWKQSFPASAYREDAALGPGAAARRSEQGAAPSRMFSYRRQPAAPPGRAATARRLARHGAWGFVASRAAHGKIQGMPYGNLLPISDGPVNNSTGIPFFYVTLKDNAVADLLKDPVASLTLPESDGNFCRKNVVDPEDPRCARLTLTGQMVTVPPEETEFAKQAMFSRHPVIRKWPRSYEWFFMKMNIEHVWLQSWYGGVSTIAVEEYLKAVPSKA", "length": 273 }, "evidence": [ { "id": "F1STG3", "url": "https://omabrowser.org/oma/group/F1STG3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8C2LTS5-1", "protein_name": "Protein CREG2", "gene_name": "Creg2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSLSGGERPAGPGTRLSWLLCCSALLSPAASYVIVSSVSWAVTNEVDEELDSASTEEALPALLEDSGSIWQQSFPASAHKEDTHLRPRGSARARPAPAPRGMFSYRRESGSSAASPGPRVRAGTARSLVHASSWGCLATASTNEKIQGLPFGSCLAISDGPFHNSTGTPFFYMTAKDPVVADLVKNPIASLMLPESEGDFCRKNIVDPEDPRCARLTLTGRMIMVPPGEVEFAKQAMFSRHPGMRKWPRQYEWFFMKMWVEHVWLQKWYGGVSDIPREEYFKAAPRKA", "length": 288 }, "evidence": [ { "id": "F1STG3", "url": "https://omabrowser.org/oma/group/F1STG3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A3H3-1", "protein_name": "Cellular repressor of E1A-stimulated genes 2", "gene_name": "Creg2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSGGESPAWPATRLSWLLCCSALLSPAAGYVIVSSVSWAVTNEVDEELDSASTEEALPALLEDSSSIWQQSFPASAHKEDTHLRPRGSARARPAPAARGMFSYRRESGSSEASPGPRVHAGTARSLAHASSWGCLATVSTHEKIQGLPFGSCLAISDGPVHNSTGVPFFYMTAKDPAVSDLVKNPVASLMLPESEGEFCRKNIVDPEDPRCARLTLTGRMVTVPPGEVEFAKQAMFSRHPGMRKWPRQYEWFFMKMWVEHIWLQKWYGGISDIPKEEYFKAAPRKA", "length": 288 }, "evidence": [ { "id": "F1STG3", "url": "https://omabrowser.org/oma/group/F1STG3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BGC9-1", "protein_name": "Protein CREG2", "gene_name": "Creg2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLSGRERPAWPGSRLSWLLCCSALLSPAAGYVIVSSVSWAVTNEVDEELDSASTEEALPALLEDSSSIWQQSFPASAHKEDTHLRPRGSARARPAPAARGMFSYRRESGSSEASPGPRVHAGTARSLAHASSWGCLATVSTHEKIQGLPFGSCLAISDGPVHNSTGIPFFYMTAKDPAVADLVKNPTASLVLPESEGEFCRKNIVDPEDPRCARLTLTGRMVTVPPGEVEFAKQAMFSRHPGMRKWPRQYEWFFMKMWVEHIWLQKWYGGVSDIPREEYFKAAPRKA", "length": 288 }, "evidence": [ { "id": "F1STG3", "url": "https://omabrowser.org/oma/group/F1STG3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IUH2-1", "protein_name": "Protein CREG2", "gene_name": "CREG2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVRRGRRPARPGTRLSWLLCCSALLSPAAGYVIVSSVSWAVTNEVDEELDSASTEEAMPALLEDSGSIWQQSFPASAHKEDAHLRPRAGAARARPPPAPPGMFSYRREGGQTASAPPGPRLRAATARSLAHASVWGCLATVSTHKKIQGLPFGNCLPVSDGPFNNSTGIPFFYMTAKDPVVADLMKNPMASLMLPESEGEFCRKNIVDPEDPRCVQLTLTGQMIAVSPEEVEFAKQAMFSRHPGMRKWPRQYEWFFMKMRIEHIWLQKWYGGASSISREEYFKAVPRKA", "length": 290 }, "evidence": [ { "id": "F1STG3", "url": "https://omabrowser.org/oma/group/F1STG3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1STG3", "url": "https://www.uniprot.org/uniprotkb/F1STG3" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1STG3", "url": "https://www.uniprot.org/uniprotkb/F1STG3" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1STG3", "url": "https://www.uniprot.org/uniprotkb/F1STG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 153, "end_pos": 155, "annotation": "n_glycosylation_sequon" }, { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STG3" }, { "id": "PF13883", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13883" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CREG-like beta-barrel", "eco_id": "ECO_0000259", "start_pos": 111, "end_pos": 272, "start_aa": "Arg", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 164 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 153, "end_pos": 155 }, { "start_pos": 154, "end_pos": 156 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STH2-1", "uniprot_ac": "F1STH2", "uniprot_id": "F1STH2_PIG", "mass": { "chemical_mass": 67931.0, "monoisotopic_mass": 67931.0 }, "refseq": { "ac": "XP_005662413", "name": "LOW QUALITY PROTEIN: interleukin-18 receptor accessory protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662413" }, "gene_names": [ { "name": "IL18RAP", "type": "recommended", "evidence": [ { "id": "F1STH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ] }, { "name": "IL18RAP", "type": "synonym", "evidence": [ { "id": "XP_005662413", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662413" } ] } ], "protein_names": [ { "name": "Interleukin-18 receptor accessory protein", "type": "recommended", "evidence": [ { "id": "F1STH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STH2/entry#names_and_taxonomy" } ] }, { "name": "Accessory protein-like", "type": "synonym", "evidence": [ { "id": "F1STH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STH2/entry#names_and_taxonomy" } ] }, { "name": "CD218 antigen-like family member B", "type": "synonym", "evidence": [ { "id": "F1STH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STH2/entry#names_and_taxonomy" } ] }, { "name": "IL-1R accessory protein-like", "type": "synonym", "evidence": [ { "id": "F1STH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STH2/entry#names_and_taxonomy" } ] }, { "name": "Interleukin-18 receptor accessory protein-like", "type": "synonym", "evidence": [ { "id": "F1STH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STH2/entry#names_and_taxonomy" } ] }, { "name": "Interleukin-18 receptor beta", "type": "synonym", "evidence": [ { "id": "F1STH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STH2/entry#names_and_taxonomy" } ] }, { "name": "LOW QUALITY PROTEIN: interleukin-18 receptor accessory protein", "type": "synonym", "evidence": [ { "id": "XP_005662413", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662413" } ] } ], "function": [ { "annotation": "Within the IL18 receptor complex, does not mediate IL18-binding, but involved in IL18-dependent signal transduction, leading to NF-kappa-B and JNK activation. May play a role in IL18-mediated IFNG synthesis from T-helper 1 (Th1) cells.", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2#function" }, { "database": "UniProtKB", "id": "ARBA00058813", "url": "https://www.uniprot.org/uniprotkb/ARBA00058813#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IL18RAP", "url": "https://www.uniprot.org/uniprotkb/F1STH2", "locus": { "chromosome": "3", "start_pos": 51762486, "end_pos": 51794471, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008157", "url": "https://www.ensembl.org/id/ENSSSCG00000008157" } ] } } ], "crossref": [ { "id": "F1STH2", "url": "https://alphafold.ebi.ac.uk/entry/F1STH2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008157", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008157", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517818", "url": "https://www.ncbi.nlm.nih.gov/gene/100517818", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015621", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015621", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035897", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035897", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041416", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041416", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517818", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517818", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1STH2", "url": "https://www.orthodb.org/?gene=F1STH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11890", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11890", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11890:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11890:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01582", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01582", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18452", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18452", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9012546", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9012546", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005662413", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662413", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STH2-1", "url": "https://www.uniprot.org/uniprotkb/F1STH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSLGWIFLWLVAGGSMKEFNISDCSTEKLLGTYSARCGEEFVLFCDLPEPQKSSFYHRSQLSPTQVSEHLTCGGNKKRSDVQWYLQHQQGDPPVEITQNNPHIILDKGSLHFLTTGMNNAGSYICRPMIRSPKDEACCVKMILEVKPKTNASCGNFVSHEQHLLLGSMDSIYCPGLSHQTDAPSPEVTWYQNGKLLSEKSNPIEVDEVYDYHQGTYVCDYTQSDNSRSWTVRAVVQVKTIVKNTKLKPDILDPIKDTLEVELGKPLTLNCTARFGFEVNFKPVLRWYIKDSDQEWEAPAPEGKSVKSTIKDEVIERVLLLKEVTQRDLRRKFICFAQNSVGNITQSIQLKEKKGVVFLYILLATVMALVAVLTTGALLYKYWIEIVLLYRTYQSKDETLRDKKEFDAFVSYAKWSSLESEATSSPTEESLALNLFPEVLENRYGYTLCLLERDVAPGGAYAEDIVSVIKKSRRGIFILSPHYISGPSVFELQAAVNLALEDQTLKLILIKFSSFQEPESLPHLVKKALRVLPTVTWQGSKSLPPNSRFWTQLRYHMPVKSSKGFMWNHLRISSGFFPWKRVSKRETTGRRSQPMGW", "length": 597, "header": "tr|F1STH2-1|F1STH2_PIG Isoform 1 of Interleukin-18 receptor accessory protein OS=Sus scrofa OX=9823 GN=IL18RAP PE=3 SV=3 CANONICAL=F1STH2-1" }, "isoforms": [ { "isoform_ac": "F1STH2-1", "url": "https://www.uniprot.org/uniprotkb/F1STH2/entry#F1STH2-1", "sequence": { "sequence": "MLSLGWIFLWLVAGGSMKEFNISDCSTEKLLGTYSARCGEEFVLFCDLPEPQKSSFYHRSQLSPTQVSEHLTCGGNKKRSDVQWYLQHQQGDPPVEITQNNPHIILDKGSLHFLTTGMNNAGSYICRPMIRSPKDEACCVKMILEVKPKTNASCGNFVSHEQHLLLGSMDSIYCPGLSHQTDAPSPEVTWYQNGKLLSEKSNPIEVDEVYDYHQGTYVCDYTQSDNSRSWTVRAVVQVKTIVKNTKLKPDILDPIKDTLEVELGKPLTLNCTARFGFEVNFKPVLRWYIKDSDQEWEAPAPEGKSVKSTIKDEVIERVLLLKEVTQRDLRRKFICFAQNSVGNITQSIQLKEKKGVVFLYILLATVMALVAVLTTGALLYKYWIEIVLLYRTYQSKDETLRDKKEFDAFVSYAKWSSLESEATSSPTEESLALNLFPEVLENRYGYTLCLLERDVAPGGAYAEDIVSVIKKSRRGIFILSPHYISGPSVFELQAAVNLALEDQTLKLILIKFSSFQEPESLPHLVKKALRVLPTVTWQGSKSLPPNSRFWTQLRYHMPVKSSKGFMWNHLRISSGFFPWKRVSKRETTGRRSQPMGW", "length": 597, "header": "tr|F1STH2-1|F1STH2_PIG Isoform 1 of Interleukin-18 receptor accessory protein OS=Sus scrofa OX=9823 GN=IL18RAP PE=3 SV=3 CANONICAL=F1STH2-1" }, "locus": { "chromosome": "3", "start_pos": 51789861, "end_pos": 51762489, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008934.6", "url": "https://www.ensembl.org/id/ENSSSCT00000008934.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008708.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008708.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517818", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517818", "resource": "KEGG Pathway" }, { "id": "R-SSC-9012546", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9012546", "resource": "Reactome", "description": "Interleukin-18 signaling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "interleukin-18 receptor complex", "id": "GO:0045092", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045092", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "inflammatory response", "id": "GO:0006954", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006954", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "pmid": "" }, { "name": "interleukin-18-mediated signaling pathway", "id": "GO:0035655", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035655", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "pmid": "" }, { "name": "immune system process", "id": "GO:0002376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002376", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "coreceptor activity", "id": "GO:0015026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015026", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "pmid": "" }, { "name": "interleukin-18 receptor activity", "id": "GO:0042008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042008", "evidence": [ { "database": "UniProtKB", "id": "F1STH2", "url": "https://www.uniprot.org/uniprotkb/F1STH2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 151, "end_pos": 153, "annotation": "n_glycosylation_sequon" }, { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" }, { "start_pos": 270, "end_pos": 272, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STH2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 597, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STH2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STH2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STH2" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 127, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1STH2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STH2" }, { "id": "PS50104", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50104" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TIR", "eco_id": "ECO_0000259", "start_pos": 404, "end_pos": 557, "start_aa": "Lys", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 151, "end_pos": 153 }, { "start_pos": 21, "end_pos": 23 }, { "start_pos": 270, "end_pos": 272 }, { "start_pos": 343, "end_pos": 345 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STI7-1", "uniprot_ac": "F1STI7", "uniprot_id": "F1STI7_PIG", "mass": { "chemical_mass": 38637.0, "monoisotopic_mass": 38637.0 }, "refseq": { "ac": "XP_003129841", "name": "protein FAM76B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129841" }, "gene_names": [ { "name": "FAM76B", "type": "recommended", "evidence": [ { "id": "F1STI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STI7" } ] }, { "name": "FAM76B", "type": "synonym", "evidence": [ { "id": "XP_003129841", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129841" } ] } ], "protein_names": [ { "name": "Protein FAM76B", "type": "recommended", "evidence": [ { "id": "F1STI7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STI7/entry#names_and_taxonomy" } ] }, { "name": "protein FAM76B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003129841", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129841" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STI7", "url": "https://www.uniprot.org/uniprotkb/F1STI7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FAM76B", "url": "https://www.uniprot.org/uniprotkb/F1STI7", "locus": { "chromosome": "9", "start_pos": 27790150, "end_pos": 27812222, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014967", "url": "https://www.ensembl.org/id/ENSSSCG00000014967" } ] } } ], "crossref": [ { "id": "F1STI7", "url": "https://alphafold.ebi.ac.uk/entry/F1STI7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014967", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014967", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100517546", "url": "https://www.ncbi.nlm.nih.gov/gene/100517546", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517546", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517546", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CACAYKR", "url": "https://omabrowser.org/oma/group/CACAYKR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STI7", "url": "https://www.orthodb.org/?gene=F1STI7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46176:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46176:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129841", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129841", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STI7", "url": "https://www.uniprot.org/uniprotkb/F1STI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STI7-1", "url": "https://www.uniprot.org/uniprotkb/F1STI7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKGLGSSHSNSSSSSLTEKDQHHSKHHHHHHHHHHRHGSSHHKISNLSPEQEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP", "length": 339, "header": "tr|F1STI7-1|F1STI7_PIG Isoform 1 of Protein FAM76B OS=Sus scrofa OX=9823 GN=FAM76B PE=3 SV=3 CANONICAL=F1STI7-1" }, "isoforms": [ { "isoform_ac": "F1STI7-1", "url": "https://www.uniprot.org/uniprotkb/F1STI7/entry#F1STI7-1", "sequence": { "sequence": "MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKGLGSSHSNSSSSSLTEKDQHHSKHHHHHHHHHHRHGSSHHKISNLSPEQEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP", "length": 339, "header": "tr|F1STI7-1|F1STI7_PIG Isoform 1 of Protein FAM76B OS=Sus scrofa OX=9823 GN=FAM76B PE=3 SV=3 CANONICAL=F1STI7-1" }, "locus": { "chromosome": "9", "start_pos": 27811910, "end_pos": 27792723, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016328.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016328.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015891.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015891.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STI7", "url": "https://www.uniprot.org/uniprotkb/F1STI7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517546", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517546", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GG35-1", "protein_name": "Protein FAM76B", "gene_name": "Fam76b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGAPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHSKHHHHHHHHHHRHSSGHHKVSSLSPEQEQGLWKQSHKSSAAIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRAKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSVLTSP", "length": 339 }, "evidence": [ { "id": "F1STI7", "url": "https://omabrowser.org/oma/group/F1STI7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BI86-1", "protein_name": "Protein FAM76B", "gene_name": "FAM76B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "VEWDKIKPNSKLKTLHHFPRAKRRRELEFDPGTPLQECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHAKHHHHHHHHHHRHSSSHHKISNLSPEQEQGLWKQSHKSSAAIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP", "length": 346 }, "evidence": [ { "id": "F1STI7", "url": "https://omabrowser.org/oma/group/F1STI7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1NYM6-1", "protein_name": "Protein FAM76B", "gene_name": "FAM76B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAAAAPALYACTKCNQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHSKHHHHHHHHHRHSSSHHKISSLSPEQDQGLWKQSHKSSAAIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP", "length": 341 }, "evidence": [ { "id": "F1STI7", "url": "https://omabrowser.org/oma/group/F1STI7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5HYJ3-1", "protein_name": "Protein FAM76B", "gene_name": "FAM76B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHPKHHHHHHHHHHRHSSSHHKISNLSPEEEQGLWKQSHKSSATIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSILTSP", "length": 339 }, "evidence": [ { "id": "F1STI7", "url": "https://omabrowser.org/oma/group/F1STI7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6PBM7-1", "protein_name": "Protein FAM76B", "gene_name": "fam76b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MATSALYACTKCNQRFPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGPPQTCEQCKQQCAFDRKDEGRRKVDGKLLCWLCTLSYRRVLQKTKEQRKGLGSSHSNSSSLSEKEHQRHHHHHQHHRHGSSHHKISGNLSPEQDQGLWKQSIQKETPKKKPKLETKPSNGDSSSITQSMDSGGTDNFILISQLKEEVMSLKRMLQQRDQTILEKDRKLTELKADFQYQESNMRVKMNNMEKAHKEAMEQQQAKNRELLKQVAALSKGKKFDRSGSSLLLP", "length": 328 }, "evidence": [ { "id": "F1STI7", "url": "https://omabrowser.org/oma/group/F1STI7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80XP8-1", "protein_name": "Protein FAM76B", "gene_name": "Fam76b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCRSEFQQESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGAPQTCEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSSLTEKDQHHSKHHHHHHHHHHRHSSGHHKVSSLSPEQEQGLWKQSHKSSAAIQNETPKKKPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKKLTELKADFQYQESNLRTKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGSVLTSP", "length": 339 }, "evidence": [ { "id": "F1STI7", "url": "https://omabrowser.org/oma/group/F1STI7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VSW7-1", "protein_name": "Protein FAM76A", "gene_name": "anon-WO0172774.118", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSGKVLFACSKCFSRHLYEELSSGQQLCKGCRGSTSVGKCTYCRSEFQPATKSQSACKKCEHYLGKYGKPSACECCKIVAAFGGSKCMRCASYEAKYGPPVQCDECKLRSAFDRRDENKKVNGKLLCWLCACAYKRALLKAQQEGRIPMSKKRPHEKTSSSHRDSAAAKKPSRNELGKSGSGANNSGVNAVSGAGLDLPDKISRGNGGNGTIAAPAAITVDTNSSDHVVAITYLKERIASLEKRLNQKDKELLEKDKQLTELKGKNFEKENDMRNRLKEVERLHDMKVDNLNRKIASVLKELAVLKKSSNKKTAAISKAEKEIIKRENLSPKEEILATTGPEKPTKASSEPADLDKDEKSRDRDEERSEQGDRASVRSRSASSSPTPSSN", "length": 390 }, "evidence": [ { "id": "F1STI7", "url": "https://omabrowser.org/oma/group/F1STI7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear speck", "id": "GO:0016607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016607", "evidence": [ { "database": "UniProtKB", "id": "F1STI7", "url": "https://www.uniprot.org/uniprotkb/F1STI7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "mRNA stabilization", "id": "GO:0048255", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048255", "evidence": [ { "database": "UniProtKB", "id": "F1STI7", "url": "https://www.uniprot.org/uniprotkb/F1STI7" } ], "pmid": "" }, { "name": "negative regulation of inflammatory response", "id": "GO:0050728", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050728", "evidence": [ { "database": "UniProtKB", "id": "F1STI7", "url": "https://www.uniprot.org/uniprotkb/F1STI7" } ], "pmid": "" }, { "name": "negative regulation of macrophage activation", "id": "GO:0043031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043031", "evidence": [ { "database": "UniProtKB", "id": "F1STI7", "url": "https://www.uniprot.org/uniprotkb/F1STI7" } ], "pmid": "" }, { "name": "negative regulation of protein export from nucleus", "id": "GO:0046826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046826", "evidence": [ { "database": "UniProtKB", "id": "F1STI7", "url": "https://www.uniprot.org/uniprotkb/F1STI7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 213, "end_pos": 215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STI7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 339, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STI7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STI7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 191, "end_pos": 193 }, { "start_pos": 213, "end_pos": 215 }, { "start_pos": 235, "end_pos": 237 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STI9-1", "uniprot_ac": "F1STI9", "uniprot_id": "F1STI9_PIG", "mass": { "chemical_mass": 54613.0, "monoisotopic_mass": 54613.0 }, "refseq": { "ac": "XP_005667307", "name": "endonuclease domain-containing 1 protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667307" }, "gene_names": [ { "name": "ENDOD1", "type": "recommended", "evidence": [ { "id": "F1STI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STI9" } ] }, { "name": "ENDOD1", "type": "synonym", "evidence": [ { "id": "XP_005667307", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667307" } ] } ], "protein_names": [ { "name": "Endonuclease domain containing 1", "type": "synonym", "evidence": [ { "id": "F1STI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STI9/entry#names_and_taxonomy" } ] }, { "name": "endonuclease domain-containing 1 protein", "type": "synonym", "evidence": [ { "id": "XP_005667307", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667307" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STI9", "url": "https://www.uniprot.org/uniprotkb/F1STI9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ENDOD1", "url": "https://www.uniprot.org/uniprotkb/F1STI9", "locus": { "chromosome": "9", "start_pos": 27164703, "end_pos": 27134056, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014965", "url": "https://www.ensembl.org/id/ENSSSCG00000014965" } ] } } ], "crossref": [ { "id": "F1STI9", "url": "https://alphafold.ebi.ac.uk/entry/F1STI9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014965", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014965", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100526236", "url": "https://www.ncbi.nlm.nih.gov/gene/100526236", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039015", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039015", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044925", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044925", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044929", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044929", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060501", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060501", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526236", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526236", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HVKICQQ", "url": "https://omabrowser.org/oma/group/HVKICQQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STI9", "url": "https://www.orthodb.org/?gene=F1STI9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21472", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21472", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21472:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21472:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-114608", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005667307", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667307", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STI9", "url": "https://www.uniprot.org/uniprotkb/F1STI9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STI9-1", "url": "https://www.uniprot.org/uniprotkb/F1STI9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPARWLALGGLLALAGLLEGRLVRKEEAGFGECNRFFYAGTPPAGLAAAAHVKICQRSEGAERFATLYSTGDRIPVYSAFRAAHPAPLGAEQRWLVEPQIDDPSSSLEEVTDEADATSSVNNLGSKQALNADYLGSDYQTGQLYPFSLSSDPHTATFTLTNAAPMTPSFQKQWYLTLNSLMDLALSPQCGNGEELYILTGAVPSDLKVKDKVTIPEFVWLAACCAVPGGGWAMGFVKHTRDGEVIEDVMVKELEKLLPFNPQLFQDNCGEMEQDTEKMKKILEMVNQVQDEERRAHTEGASRTPSSTRSTRSALLPPETSGEKSSLLGKLLGFITTPFIKLCQLIYCLAIGILKYTVYFVWYVTKQVTYGLESCLYRLGSATISYFLAIGEELASIPWKVLKVMVRITRAILRILCCLLKVVCRVLGLPVRVLVDVATFPVYTVGAVPIVCRDIAVGLGGIISLLFDTAFGTMGGIFQVLFNVCKRIGFKITSDNPGEL", "length": 500, "header": "tr|F1STI9-1|F1STI9_PIG Isoform 1 of Endonuclease domain containing 1 OS=Sus scrofa OX=9823 GN=ENDOD1 PE=1 SV=1 CANONICAL=F1STI9-1" }, "isoforms": [ { "isoform_ac": "F1STI9-1", "url": "https://www.uniprot.org/uniprotkb/F1STI9/entry#F1STI9-1", "sequence": { "sequence": "MGPARWLALGGLLALAGLLEGRLVRKEEAGFGECNRFFYAGTPPAGLAAAAHVKICQRSEGAERFATLYSTGDRIPVYSAFRAAHPAPLGAEQRWLVEPQIDDPSSSLEEVTDEADATSSVNNLGSKQALNADYLGSDYQTGQLYPFSLSSDPHTATFTLTNAAPMTPSFQKQWYLTLNSLMDLALSPQCGNGEELYILTGAVPSDLKVKDKVTIPEFVWLAACCAVPGGGWAMGFVKHTRDGEVIEDVMVKELEKLLPFNPQLFQDNCGEMEQDTEKMKKILEMVNQVQDEERRAHTEGASRTPSSTRSTRSALLPPETSGEKSSLLGKLLGFITTPFIKLCQLIYCLAIGILKYTVYFVWYVTKQVTYGLESCLYRLGSATISYFLAIGEELASIPWKVLKVMVRITRAILRILCCLLKVVCRVLGLPVRVLVDVATFPVYTVGAVPIVCRDIAVGLGGIISLLFDTAFGTMGGIFQVLFNVCKRIGFKITSDNPGEL", "length": 500, "header": "tr|F1STI9-1|F1STI9_PIG Isoform 1 of Endonuclease domain containing 1 OS=Sus scrofa OX=9823 GN=ENDOD1 PE=1 SV=1 CANONICAL=F1STI9-1" }, "locus": { "chromosome": "9", "start_pos": 27161214, "end_pos": 27134108, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016326.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016326.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015889.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015889.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STI9", "url": "https://www.uniprot.org/uniprotkb/F1STI9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100526236", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526236", "resource": "KEGG Pathway" }, { "id": "R-SSC-114608", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-114608", "resource": "Reactome", "description": "Platelet degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y2I3-1", "protein_name": "Endonuclease domain containing 1", "gene_name": "ENDOD1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MERAVKMSVLCLLCVSLFPSFSLGRVVGKDEAGFAECNAFFPGRVPPEGFTEPFHVKICQQYNGEPRFATLYSTKDKIPLYSAFKYRGAARSGPQGSWLLEPQVDDPENDQHEMVIETDVVDSLANLGANQALTSDYVGSGYERGLLNPSSLNKEDFQMATYTLTNAVPLRPSLSKTWHSDIGRVVEQALIPHCSKKDQLYLIAGAIPSSVRVKGKVSVPETLWLAACCDAPEGWSLGLVKKVSDESSLADLTVGELEKQLLAGIDLFKGNCGEDNESNEKMKAILQAVSQIRSGEQVGTNDKEEAEDSGLVRKVVGIIATPFIKLLELLIYLLVELVKFMFYFLWLVIKRVGSTLLDGVYSLWNGTVSYLKAISMVLISIPYDVGRVIANIFLGFLGIIRDVAAITYRILRIPMGFVLHLASFPYYSICAIPSVVTDMASGIGGTFSLAIDATASILHGFYYVATHIAKRFIPKGSSGD", "length": 480 }, "evidence": [ { "id": "F1STI9", "url": "https://omabrowser.org/oma/group/F1STI9/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZIP8-1", "protein_name": "Endonuclease domain containing 1", "gene_name": "Endod1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGCARWLALGGLLALLGLLQARLLLPQQAGFGECDRFFYAGTPPAGLATEAHVRICQRFAGSERFATLYSPGHRIPVFSAFRAARPASRSAEQRGLLEPQIDDPDSNLEEVIDEADAVSVNNLGSKQALSADYLDSDYEIGQLYPFPLNSDLQMSAFPLTNSVPMTRSFRERWHMNLNSLMDRALIPQCSDGKDLYLLTGAVPSDHKVKGKVTVPEFVWLAACCAVPGGGWAMGFIKHTQDSDVIEDVMVRDLEKLLLHKPQLFQDNCGETEQDTEKMKKILEVVNQVQDEERSLQSQENMSPLASTRSQRSALLSPEAPPEGGGSFLGKVLGFLTTPFIKLFQLIYYLITAVLRNVVHLLWFVAKQVINGVASSLYGLGEAVVSYLVAIGQELVSIPWKVLKVVAKVIRAFLRILCCVLKAVCRALSIPLRVLVDVATFPVYTMGAIPIVCKDIAVGLGGTLSLLFDTAFGTMGGLFQIVFSVFKRIGCRVTLDSSGEL", "length": 500 }, "evidence": [ { "id": "F1STI9", "url": "https://omabrowser.org/oma/group/F1STI9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O94919-1", "protein_name": "Endonuclease domain-containing 1 protein", "gene_name": "ENDOD1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGTARWLALGSLFALAGLLEGRLVGEEEAGFGECDKFFYAGTPPAGLAADSHVKICQRAEGAERFATLYSTRDRIPVYSAFRAPRPAPGGAEQRWLVEPQIDDPNSNLEEAINEAEAITSVNSLGSKQALNTDYLDSDYQRGQLYPFSLSSDVQVATFTLTNSAPMTQSFQERWYVNLHSLMDRALTPQCGSGEDLYILTGTVPSDYRVKDKVAVPEFVWLAACCAVPGGGWAMGFVKHTRDSDIIEDVMVKDLQKLLPFNPQLFQNNCGETEQDTEKMKKILEVVNQIQDEERMVQSQKSSSPLSSTRSKRSTLLPPEASEGSSSFLGKLMGFIATPFIKLFQLIYYLVVAILKNIVYFLWCVTKQVINGIESCLYRLGSATISYFMAIGEELVSIPWKVLKVVAKVIRALLRILCCLLKAICRVLSIPVRVLVDVATFPVYTMGAIPIVCKDIALGLGGTVSLLFDTAFGTLGGLFQVVFSVCKRIGYKVTFDNSGEL", "length": 500 }, "evidence": [ { "id": "F1STI9", "url": "https://omabrowser.org/oma/group/F1STI9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8C522-1", "protein_name": "Endonuclease domain-containing 1 protein", "gene_name": "Endod1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGCARWLALGGLLALAGLLQARLLLPQQAGFGECDRFFYKGTPPAGLATEAHVRICQRFAGSERFATLYSPGHRIPVFSAFRAARPASRSAEQRGLLEPQIDDPDSNLEEVIDEANALTSVDNLGSKQALNADYIDSDYEIGQLYPFPLNSDLQMATFPLTNSVPMTQSFRERWHMNLNSLMDRALIPHCSEGKDLYILTGAVPSEHRVKGKVTIPEFVWLAACCAVPGEGWAMGFIKHTQDIDVIEDVMLRDLEKLLPHKPQLFQDNCGEMEQDTEKMKKILEVVNQVQDEERSLQSQERMSPLASTQSQRSALLSPEAPPEGGSSFLGQVLGFLATPFIKLFQLIYYLVTAVLRNIVHLLWLVAKQAINTVESCLYHLGEATVSYLVAIGQELVSIPWKVLKVVAKVIRAFLRILCCLLKAVCRALSIPLRVLVDVATFPVYTVGAIPIVCKDIAVGLGGTLSLLFDTAFGTVGGLFQIVFSVFKRIGYKVTLDNSGEF", "length": 501 }, "evidence": [ { "id": "F1STI9", "url": "https://omabrowser.org/oma/group/F1STI9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1STI9", "url": "https://www.uniprot.org/uniprotkb/F1STI9" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F1STI9", "url": "https://www.uniprot.org/uniprotkb/F1STI9" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F1STI9", "url": "https://www.uniprot.org/uniprotkb/F1STI9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STI9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 500, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STI9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STI9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STI9" }, { "id": "SM00892", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00892" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DNA/RNA non-specific endonuclease/pyrophosphatase/phosphodiesterase", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 267, "start_aa": "Gly", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1STI9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STI9" }, { "id": "SM00477", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00477" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ENPP1-3/EXOG-like endonuclease/phosphodiesterase", "eco_id": "ECO_0000259", "start_pos": 62, "end_pos": 267, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STK6-1", "uniprot_ac": "F1STK6", "uniprot_id": "F1STK6_PIG", "mass": { "chemical_mass": 22315.0, "monoisotopic_mass": 22315.0 }, "refseq": { "ac": "XP_003129835", "name": "V-set and transmembrane domain-containing protein 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129835" }, "gene_names": [ { "name": "VSTM5", "type": "recommended", "evidence": [ { "id": "F1STK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ] }, { "name": "VSTM5", "type": "synonym", "evidence": [ { "id": "XP_003129835", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129835" } ] } ], "protein_names": [ { "name": "V-set and transmembrane domain-containing protein 5", "type": "recommended", "evidence": [ { "id": "F1STK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STK6/entry#names_and_taxonomy" } ] }, { "name": "V-set and transmembrane domain-containing protein 5", "type": "synonym", "evidence": [ { "id": "XP_003129835", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129835" } ] } ], "function": [ { "annotation": "Cell adhesion-like membrane protein of the central nervous system (CNS) which modulates both the position and complexity of central neurons by altering their membrane morphology and dynamics. Involved in the formation of neuronal dendrites and protrusions including dendritic filopodia. In synaptogenesis, regulates synapse formation by altering dendritic spine morphology and actin distribution. Promotes formation of unstable neuronal spines such as thin and branched types. Regulates neuronal morphogenesis and migration during cortical development in the brain.", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6#function" }, { "database": "UniProtKB", "id": "ARBA00053459", "url": "https://www.uniprot.org/uniprotkb/ARBA00053459#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "VSTM5", "url": "https://www.uniprot.org/uniprotkb/F1STK6", "locus": { "chromosome": "9", "start_pos": 26221073, "end_pos": 26245395, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014950", "url": "https://www.ensembl.org/id/ENSSSCG00000014950" } ] } } ], "crossref": [ { "id": "F1STK6", "url": "https://alphafold.ebi.ac.uk/entry/F1STK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014950", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014950", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516505", "url": "https://www.ncbi.nlm.nih.gov/gene/100516505", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024303", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024303", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060297", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060297", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516505", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516505", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1STK6", "url": "https://www.orthodb.org/?gene=F1STK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12080:SF93", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12080:SF93", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF11465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF28389", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28389", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129835", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129835", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STK6-1", "url": "https://www.uniprot.org/uniprotkb/F1STK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPLPSGRRKSRGLSLGVLALCLAAARCLQSQGVSLYIPQSAINATVEEDILLSVEYSCPGVPTIEWKYTSTWGVQKIVEWRPGTQANISQSHKDRVCTFDNGSIQLFSVGVRDSGYYVITVTERLGSSQFGTIVLHVSEILYEDLHFVAVFLALLAAVAAVLISLMWVCNKCAYKFQRKRRHKLKESTTEEIELQDVEC", "length": 200, "header": "tr|F1STK6-1|F1STK6_PIG Isoform 1 of V-set and transmembrane domain-containing protein 5 OS=Sus scrofa OX=9823 GN=VSTM5 PE=4 SV=3 CANONICAL=F1STK6-1" }, "isoforms": [ { "isoform_ac": "F1STK6-1", "url": "https://www.uniprot.org/uniprotkb/F1STK6/entry#F1STK6-1", "sequence": { "sequence": "MRPLPSGRRKSRGLSLGVLALCLAAARCLQSQGVSLYIPQSAINATVEEDILLSVEYSCPGVPTIEWKYTSTWGVQKIVEWRPGTQANISQSHKDRVCTFDNGSIQLFSVGVRDSGYYVITVTERLGSSQFGTIVLHVSEILYEDLHFVAVFLALLAAVAAVLISLMWVCNKCAYKFQRKRRHKLKESTTEEIELQDVEC", "length": 200, "header": "tr|F1STK6-1|F1STK6_PIG Isoform 1 of V-set and transmembrane domain-containing protein 5 OS=Sus scrofa OX=9823 GN=VSTM5 PE=4 SV=3 CANONICAL=F1STK6-1" }, "locus": { "chromosome": "9", "start_pos": 26245266, "end_pos": 26223613, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016309.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016309.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015872.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015872.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516505", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516505", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "pmid": "" }, { "name": "axon", "id": "GO:0030424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030424", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "pmid": "" }, { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "pmid": "" }, { "name": "filopodium assembly", "id": "GO:0046847", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046847", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "pmid": "" }, { "name": "protein homooligomerization", "id": "GO:0051260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051260", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "pmid": "" }, { "name": "ventral spinal cord development", "id": "GO:0021517", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0021517", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "pmid": "" }, { "name": "positive regulation of excitatory synapse assembly", "id": "GO:1904891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904891", "evidence": [ { "database": "UniProtKB", "id": "F1STK6", "url": "https://www.uniprot.org/uniprotkb/F1STK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 44, "end_pos": 46, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STK6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 200, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STK6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STK6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STK6" }, { "id": "SM00409", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00409" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Immunoglobulin", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 139, "start_aa": "Gln", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 44, "end_pos": 46 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STM6-1", "uniprot_ac": "F1STM6", "uniprot_id": "F1STM6_PIG", "mass": { "chemical_mass": 39907.0, "monoisotopic_mass": 39907.0 }, "refseq": {}, "gene_names": [ { "name": "MTNR1B", "type": "recommended", "evidence": [ { "id": "F1STM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM6" } ] } ], "protein_names": [ { "name": "Melatonin receptor 1B", "type": "synonym", "evidence": [ { "id": "F1STM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STM6", "url": "https://www.uniprot.org/uniprotkb/F1STM6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MTNR1B", "url": "https://www.uniprot.org/uniprotkb/F1STM6", "locus": { "chromosome": "9", "start_pos": 25558054, "end_pos": 25545390, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014939", "url": "https://www.ensembl.org/id/ENSSSCG00000014939" } ] } } ], "crossref": [ { "id": "F1STM6", "url": "https://alphafold.ebi.ac.uk/entry/F1STM6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014939", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014939", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "WHTPLYI", "url": "https://omabrowser.org/oma/group/WHTPLYI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24228:SF54", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24228:SF54", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-373076", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373076", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1STM6", "url": "https://www.uniprot.org/uniprotkb/F1STM6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STM6-1", "url": "https://www.uniprot.org/uniprotkb/F1STM6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPENGSFANCCEAGGLAEHPGWLGAGDAPPSRTPRPPWVAPALSAVLIVTTAVDIVGNLLVILSVLGNRKLRNAGNLFLVSLALADLVVALYPYPLVLVAIFQDGWAQGEVHCKASAFVMGLSVIGSVFNITAIAINRYCYICHSLAYHRLCRRWHTPLYICLVWLLTLAALVPNFFVGSLEYDPRIYSCTFVQTASARYTGAVVAVHFLLPMAVVCFCYLRIWVLVLRARRKVKSDNKLCPRSSNVRSFLSMFVVFVIFAVCWAPLNCIGLAVAVNPEAVAPQVPEGLFVASYYLAYFNSCLNAIIYGLLNQNFRREFQKIISALWNPRRCMQDSSKGSQAEGPESQALPEVSAQRPVGADTL", "length": 364, "header": "tr|F1STM6-1|F1STM6_PIG Isoform 1 of Melatonin receptor 1B OS=Sus scrofa OX=9823 GN=MTNR1B PE=3 SV=3 CANONICAL=F1STM6-1" }, "isoforms": [ { "isoform_ac": "F1STM6-1", "url": "https://www.uniprot.org/uniprotkb/F1STM6/entry#F1STM6-1", "sequence": { "sequence": "MPENGSFANCCEAGGLAEHPGWLGAGDAPPSRTPRPPWVAPALSAVLIVTTAVDIVGNLLVILSVLGNRKLRNAGNLFLVSLALADLVVALYPYPLVLVAIFQDGWAQGEVHCKASAFVMGLSVIGSVFNITAIAINRYCYICHSLAYHRLCRRWHTPLYICLVWLLTLAALVPNFFVGSLEYDPRIYSCTFVQTASARYTGAVVAVHFLLPMAVVCFCYLRIWVLVLRARRKVKSDNKLCPRSSNVRSFLSMFVVFVIFAVCWAPLNCIGLAVAVNPEAVAPQVPEGLFVASYYLAYFNSCLNAIIYGLLNQNFRREFQKIISALWNPRRCMQDSSKGSQAEGPESQALPEVSAQRPVGADTL", "length": 364, "header": "tr|F1STM6-1|F1STM6_PIG Isoform 1 of Melatonin receptor 1B OS=Sus scrofa OX=9823 GN=MTNR1B PE=3 SV=3 CANONICAL=F1STM6-1" }, "locus": { "chromosome": "9", "start_pos": 25557649, "end_pos": 25545560, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016297.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016297.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015860.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015860.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STM6", "url": "https://www.uniprot.org/uniprotkb/F1STM6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-373076", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373076", "resource": "Reactome", "description": "Class A/1 (Rhodopsin-like receptors)" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0A0MQ60-1", "protein_name": "Melatonin receptor 1B", "gene_name": "MTNR1B", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLENGSLRNCCEPGGRGHFGSAEREAAAGGAPRPAWVVTALSSVLIFTTVVDILGNLLVIVSVFKNRKLRNSGNAFVVSLALADLVVALYPYPLVLLAIFHNGWTLGEMHCKVSGFVMGLSVIGSIFNITAIAINRYCYICHSFAYDKVYSCWNTMLYVSLIWVLTVIATVPNFFVGSLKYDPRIYSCTFVQTASSYYTIAVVVIHFIVPITVVSFCYLRIWVLVLQVRRRVKSETKPRLKPSDFRNFLTMFVVFVIFAFCWAPLNFIGLAVAINPSEMAPKVPEWLFIISYFMAYFNSCLNAIIYGLLNQNFRNEYKRILMSLWMPRLFFQDTSKGGTDGQKSKPSPALNNNDQMKTDTL", "length": 361 }, "evidence": [ { "id": "F1STM6", "url": "https://omabrowser.org/oma/group/F1STM6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q1MJK4-1", "protein_name": "Melatonin receptor 1B", "gene_name": "MTNR1B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPENGSFANCCEAGGRAESPRWTGAGGARPSGAPRPPWVAPALSAVLVVTTAVDIVGNLLVILSVLGNRKLRNAGNLFLVSLAFADLAVALYPYPLSLVAIFHDGWALGEVHCKASAFVMGLSVVGSVFNITAIAVDRYCYVCRSVTYHRLCRRRHAAVYVGLVWLLTLLVLLPNFFVGSLEYDPRVYSCTFAQTASAGYTAAVVLVHFLLPVAVVCFCYLHIWVLVLRARRKVKAESKPRPWSSRVRSFLSMFVVFVIFAICWAPLNCIGLAVAIDPEEVAPRVPEGLFVSSYFLAYFNSCLNAIVYGLLNQNFRREYKRIISALWNPRRCLQNSSKGSQAEGPGSQPTPADSARAPVQADNLPPDAQPGNALRK", "length": 376 }, "evidence": [ { "id": "F1STM6", "url": "https://omabrowser.org/oma/group/F1STM6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P49287-1", "protein_name": "Melatonin receptor type 1B", "gene_name": "Mtnr1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPDNSSIANCCAASGLAARPSWPGSAEAEPPETPRAPWVAPMLSTVVIVTTAVDFVGNLLVILSVLRNRKLRNAGNLFVVNLALADLVVALYPYPLILVAILHDGWVLGEIHCKASAFVMGLSVIGSVFNITAIAINRYWCICHSATYHRACSQWHAPLYISLIWLLTLVALVPNFFVGSLEYDPRIYSCTFIQTASTQYTMAVVAIHFLLPIAVVSFCYLRIWILVLQARRKAKAERKLRLRPSDLRSFLTMFAVFVVFAICWAPLNCIGLAVAINPEAMALQIPEGLFVTSYFLAYFNSCLNAIVYGLLNQNFRREYKRILSALWSTGRCFHDASKCHLTEDLQGPVPPAAMATIPVQEGAL", "length": 364 }, "evidence": [ { "id": "F1STM6", "url": "https://omabrowser.org/oma/group/F1STM6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P51049-1", "protein_name": "Melatonin receptor type 1B-B", "gene_name": "mtnr1bb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPENIAFLTNSTDLGHVGRALGSSARPAWAIAVLASVLIFTTVVDVLGNLLVIISVFRNRKLRNAGNVFVVSLAFADLVVAFYPYPLVLYAIFHDGWSLGETQCKISGFLMGLSVIGSVFNITGIAINRYCYICHSFAYGRLYSFRNTLLLVALIWALTVLAILPNFFVGSLSYDPRVYSCTFTQTASSSYTVVVVVVHFLVPIAVVTFCYLRIWVLVIQVRRKVKSEERSRVRPSDLRNFVTMFVVFVLFAICWAPLNLIGLVVAINPEVMAPRVPEWLFVVSYFMAYFNSCLNAIIYGLLNRNFRKEYVRIMTAVWIPRRFVTETSRAATDGMRSKPSPAINNNE", "length": 347 }, "evidence": [ { "id": "F1STM6", "url": "https://omabrowser.org/oma/group/F1STM6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1STM6", "url": "https://www.uniprot.org/uniprotkb/F1STM6" } ], "pmid": "" }, { "name": "melatonin receptor activity", "id": "GO:0008502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008502", "evidence": [ { "database": "UniProtKB", "id": "F1STM6", "url": "https://www.uniprot.org/uniprotkb/F1STM6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1STM6", "url": "https://www.uniprot.org/uniprotkb/F1STM6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F1STM6", "url": "https://www.uniprot.org/uniprotkb/F1STM6" } ], "pmid": "" }, { "name": "glucose homeostasis", "id": "GO:0042593", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042593", "evidence": [ { "database": "UniProtKB", "id": "F1STM6", "url": "https://www.uniprot.org/uniprotkb/F1STM6" } ], "pmid": "" }, { "name": "regulation of insulin secretion", "id": "GO:0050796", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050796", "evidence": [ { "database": "UniProtKB", "id": "F1STM6", "url": "https://www.uniprot.org/uniprotkb/F1STM6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STM6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 364, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STM6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STM6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STM6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STM6" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 57, "end_pos": 308, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 130, "end_pos": 132 }, { "start_pos": 4, "end_pos": 6 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STP5-1", "uniprot_ac": "F1STP5", "uniprot_id": "F1STP5_PIG", "mass": { "chemical_mass": 51759.0, "monoisotopic_mass": 51759.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Tripartite motif-containing protein 64-like", "type": "recommended", "evidence": [ { "id": "F1STP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STP5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STP5", "url": "https://www.uniprot.org/uniprotkb/F1STP5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1STP5", "locus": {} } ], "crossref": [ { "id": "F1STP5", "url": "https://alphafold.ebi.ac.uk/entry/F1STP5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd19783", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19783", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1STP5", "url": "https://www.uniprot.org/uniprotkb/F1STP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STP5-1", "url": "https://www.uniprot.org/uniprotkb/F1STP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSEGFMHTFQDELKCSICMNYFIDPVTTDCGHSFCRPCLYLCWEEEQAPKSCPECRAVSEKPDLKTNIVLKRLASLARQARASHSSSSEEQLCGTHREKGLFCEADKTLLCGPCSEGPEHAAHSHSPIQWAAEERREMLLKRMDSLWKMTQEMQNNRNQETKKIRSLEDYVTLRKVMIKLQYQRMHLFLREEEQFHLEALEKEAKETGRDLKESVFRMTQQKETLKEMYSMLTELCRSPDTELLQDLENVLEMTELVQMQNPQPVNPELTCWPVTGMLDMLNNFRAENVLSQKMSIHSVRLSEDEASVVFEDDPQGASSEPPSEERFVAWGAQAFTSGRHYWEVDVTRSSNWILGVCKDIWTSDTDISVDSEDAFLLFSMKNDQYTLSTNSPPLIQYVQRPLGRVGVFLDYDNGTVSFYDVCKGSLIYSFLPSSFSSPLRPFLCLRSPG", "length": 450, "header": "tr|F1STP5-1|F1STP5_PIG Isoform 1 of Tripartite motif-containing protein 64-like OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1STP5-1" }, "isoforms": [ { "isoform_ac": "F1STP5-1", "url": "https://www.uniprot.org/uniprotkb/F1STP5/entry#F1STP5-1", "sequence": { "sequence": "MDSEGFMHTFQDELKCSICMNYFIDPVTTDCGHSFCRPCLYLCWEEEQAPKSCPECRAVSEKPDLKTNIVLKRLASLARQARASHSSSSEEQLCGTHREKGLFCEADKTLLCGPCSEGPEHAAHSHSPIQWAAEERREMLLKRMDSLWKMTQEMQNNRNQETKKIRSLEDYVTLRKVMIKLQYQRMHLFLREEEQFHLEALEKEAKETGRDLKESVFRMTQQKETLKEMYSMLTELCRSPDTELLQDLENVLEMTELVQMQNPQPVNPELTCWPVTGMLDMLNNFRAENVLSQKMSIHSVRLSEDEASVVFEDDPQGASSEPPSEERFVAWGAQAFTSGRHYWEVDVTRSSNWILGVCKDIWTSDTDISVDSEDAFLLFSMKNDQYTLSTNSPPLIQYVQRPLGRVGVFLDYDNGTVSFYDVCKGSLIYSFLPSSFSSPLRPFLCLRSPG", "length": 450, "header": "tr|F1STP5-1|F1STP5_PIG Isoform 1 of Tripartite motif-containing protein 64-like OS=Sus scrofa OX=9823 GN= PE=4 SV=4 CANONICAL=F1STP5-1" }, "locus": { "chromosome": "9", "start_pos": 23031338, "end_pos": 23025133, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016287.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016287.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015851.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015851.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STP5", "url": "https://www.uniprot.org/uniprotkb/F1STP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STP5", "url": "https://www.uniprot.org/uniprotkb/F1STP5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1STP5", "url": "https://www.uniprot.org/uniprotkb/F1STP5" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1STP5", "url": "https://www.uniprot.org/uniprotkb/F1STP5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "F1STP5", "url": "https://www.uniprot.org/uniprotkb/F1STP5" } ], "pmid": "" }, { "name": "regulation of gene expression", "id": "GO:0010468", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010468", "evidence": [ { "database": "UniProtKB", "id": "F1STP5", "url": "https://www.uniprot.org/uniprotkb/F1STP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 414, "end_pos": 416, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STP5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 450, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STP5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STP5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STP5" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 89, "end_pos": 129, "start_aa": "Ser", "end_aa": "Ile", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1STP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STP5" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 269, "end_pos": 450, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1STP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STP5" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 57, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 414, "end_pos": 416 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STP6-1", "uniprot_ac": "F1STP6", "uniprot_id": "F1STP6_PIG", "mass": { "chemical_mass": 47281.0, "monoisotopic_mass": 47281.0 }, "refseq": { "ac": "XP_020958335", "name": "upstream-binding factor 1-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958335" }, "gene_names": [ { "name": "UBTFL1", "type": "synonym", "evidence": [ { "id": "XP_020958335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958335" } ] } ], "protein_names": [ { "name": "Upstream binding transcription factor like 1", "type": "synonym", "evidence": [ { "id": "F1STP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STP6/entry#names_and_taxonomy" } ] }, { "name": "upstream-binding factor 1-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_020958335", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958335" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STP6", "url": "https://www.uniprot.org/uniprotkb/F1STP6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1STP6", "locus": {} } ], "crossref": [ { "id": "F1STP6", "url": "https://alphafold.ebi.ac.uk/entry/F1STP6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014929", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014929", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd21998", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21998", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22003", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22003", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "110262277", "url": "https://www.ncbi.nlm.nih.gov/gene/110262277", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051762", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051762", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110262277", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110262277", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KMRRYRT", "url": "https://omabrowser.org/oma/group/KMRRYRT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STP6", "url": "https://www.orthodb.org/?gene=F1STP6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46318", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46318", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46318:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46318:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020958335", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020958335", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STP6", "url": "https://www.uniprot.org/uniprotkb/F1STP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STP6-1", "url": "https://www.uniprot.org/uniprotkb/F1STP6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMLSQGQGDWSKEDVEKLLERMEKNLPSNDSHTFKTAQSLMDWEKVAFKAFSGQMCKQKWLEISYNLRKLRTLSELVLEAKENVHSSHKSRKLEKHPDFPKKPLTSYIRFFTEMRPQYLQKHPQLSNQELTKVLSEEYKKLPEQMKLKYTQDFQKEKQEFEEKMAQFKEQHPDLVRKSRKSAVPKGSQSRLQGNVQKVRSPPRNKVSMTMKFHGEPKKPPMHGYHKFHQDLWSSWQLKGLPYWQRMVEIGRLWQRVPQNEKEHYKKQAEQLQKQYKVDLDLWLQTLSPEEYAAYRERTYSKRKNMSMPGGPDPKIRKMDLQSPSAGNLQGGLGGDQGLRETESSDTIGENVSQASEEQKDLKEREEGRNSSDSNRDEDEDGVVEGSGDEDEYCDVQHSGPNSHS", "length": 404, "header": "tr|F1STP6-1|F1STP6_PIG Isoform 1 of Upstream binding transcription factor like 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=F1STP6-1" }, "isoforms": [ { "isoform_ac": "F1STP6-1", "url": "https://www.uniprot.org/uniprotkb/F1STP6/entry#F1STP6-1", "sequence": { "sequence": "MMLSQGQGDWSKEDVEKLLERMEKNLPSNDSHTFKTAQSLMDWEKVAFKAFSGQMCKQKWLEISYNLRKLRTLSELVLEAKENVHSSHKSRKLEKHPDFPKKPLTSYIRFFTEMRPQYLQKHPQLSNQELTKVLSEEYKKLPEQMKLKYTQDFQKEKQEFEEKMAQFKEQHPDLVRKSRKSAVPKGSQSRLQGNVQKVRSPPRNKVSMTMKFHGEPKKPPMHGYHKFHQDLWSSWQLKGLPYWQRMVEIGRLWQRVPQNEKEHYKKQAEQLQKQYKVDLDLWLQTLSPEEYAAYRERTYSKRKNMSMPGGPDPKIRKMDLQSPSAGNLQGGLGGDQGLRETESSDTIGENVSQASEEQKDLKEREEGRNSSDSNRDEDEDGVVEGSGDEDEYCDVQHSGPNSHS", "length": 404, "header": "tr|F1STP6-1|F1STP6_PIG Isoform 1 of Upstream binding transcription factor like 1 OS=Sus scrofa OX=9823 GN= PE=4 SV=3 CANONICAL=F1STP6-1" }, "locus": { "chromosome": "9", "start_pos": 23062667, "end_pos": 23061456, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016286.3", "url": "https://www.ensembl.org/id/ENSSSCT00000016286.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015850.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015850.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STP6", "url": "https://www.uniprot.org/uniprotkb/F1STP6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110262277", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110262277", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "transcription by RNA polymerase I", "id": "GO:0006360", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006360", "evidence": [ { "database": "UniProtKB", "id": "F1STP6", "url": "https://www.uniprot.org/uniprotkb/F1STP6" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase I", "id": "GO:0045943", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045943", "evidence": [ { "database": "UniProtKB", "id": "F1STP6", "url": "https://www.uniprot.org/uniprotkb/F1STP6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1STP6", "url": "https://www.uniprot.org/uniprotkb/F1STP6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase I core promoter sequence-specific DNA binding", "id": "GO:0001164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001164", "evidence": [ { "database": "UniProtKB", "id": "F1STP6", "url": "https://www.uniprot.org/uniprotkb/F1STP6" } ], "pmid": "" }, { "name": "RNA polymerase I general transcription initiation factor activity", "id": "GO:0001181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001181", "evidence": [ { "database": "UniProtKB", "id": "F1STP6", "url": "https://www.uniprot.org/uniprotkb/F1STP6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" }, { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 350, "end_pos": 352, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STP6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 404, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STP6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STP6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STP6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STP6" }, { "id": "PS50118", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMG box", "eco_id": "ECO_0000259", "start_pos": 100, "end_pos": 168, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 29, "end_pos": 31 }, { "start_pos": 304, "end_pos": 306 }, { "start_pos": 350, "end_pos": 352 }, { "start_pos": 369, "end_pos": 371 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STQ5-1", "uniprot_ac": "F1STQ5", "uniprot_id": "F1STQ5_PIG", "mass": { "chemical_mass": 43281.0, "monoisotopic_mass": 43281.0 }, "refseq": { "ac": "XP_003127770", "name": "keratinocyte differentiation factor 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127770" }, "gene_names": [ { "name": "KDF1", "type": "recommended", "evidence": [ { "id": "F1STQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ] }, { "name": "KDF1", "type": "synonym", "evidence": [ { "id": "XP_003127770", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127770" } ] } ], "protein_names": [ { "name": "Keratinocyte differentiation factor 1", "type": "synonym", "evidence": [ { "id": "F1STQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STQ5/entry#names_and_taxonomy" } ] }, { "name": "keratinocyte differentiation factor 1", "type": "synonym", "evidence": [ { "id": "XP_003127770", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127770" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KDF1", "url": "https://www.uniprot.org/uniprotkb/F1STQ5", "locus": { "chromosome": "6", "start_pos": 84254499, "end_pos": 84265041, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003567", "url": "https://www.ensembl.org/id/ENSSSCG00000003567" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003567", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003567", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100511202", "url": "https://www.ncbi.nlm.nih.gov/gene/100511202", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100511202", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511202", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WSKEHNG", "url": "https://omabrowser.org/oma/group/WSKEHNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STQ5", "url": "https://www.orthodb.org/?gene=F1STQ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35085", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35085", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35085:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35085:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15551", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15551", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127770", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127770", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STQ5-1", "url": "https://www.uniprot.org/uniprotkb/F1STQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRPGHPRPSSGPPRLGPWERPAELCLETYDEPSRAPPSRRTRRPDPKDPGHHGPESLTFLSGSAEQAAEPPACCLLWRPLVWDWCRAAFCFRRCRDCLQRCGACARGCSPCLSAGDSPEGTAEASWAKEHNGVPPSPDRAPPSRRDGQRLKSAMGSSFSYPDVKLKGIPVYPYRSATSPVPDSDSCCKEPLAEPPSMRHSLPSTLASSPRGSEEYYSFHESDLDLPEIGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLISSITQDYHLDEQDAEGRLVRGIIRISTRKSRARPQATEGRSTRAAAPAAAAPDSGHETMVGSGLSQDELTVQISQETTADAIARKLRPYGAPGYPTSHDSSFQGTDTDSSGAPLLQVYC", "length": 398, "header": "tr|F1STQ5-1|F1STQ5_PIG Isoform 1 of Keratinocyte differentiation factor 1 OS=Sus scrofa OX=9823 GN=KDF1 PE=4 SV=1 CANONICAL=F1STQ5-1" }, "isoforms": [ { "isoform_ac": "F1STQ5-1", "url": "https://www.uniprot.org/uniprotkb/F1STQ5/entry#F1STQ5-1", "sequence": { "sequence": "MPRPGHPRPSSGPPRLGPWERPAELCLETYDEPSRAPPSRRTRRPDPKDPGHHGPESLTFLSGSAEQAAEPPACCLLWRPLVWDWCRAAFCFRRCRDCLQRCGACARGCSPCLSAGDSPEGTAEASWAKEHNGVPPSPDRAPPSRRDGQRLKSAMGSSFSYPDVKLKGIPVYPYRSATSPVPDSDSCCKEPLAEPPSMRHSLPSTLASSPRGSEEYYSFHESDLDLPEIGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLISSITQDYHLDEQDAEGRLVRGIIRISTRKSRARPQATEGRSTRAAAPAAAAPDSGHETMVGSGLSQDELTVQISQETTADAIARKLRPYGAPGYPTSHDSSFQGTDTDSSGAPLLQVYC", "length": 398, "header": "tr|F1STQ5-1|F1STQ5_PIG Isoform 1 of Keratinocyte differentiation factor 1 OS=Sus scrofa OX=9823 GN=KDF1 PE=4 SV=1 CANONICAL=F1STQ5-1" }, "locus": { "chromosome": "6", "start_pos": 84258272, "end_pos": 84255009, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003961.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003961.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003870.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003870.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100511202", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100511202", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2A9F4-1", "protein_name": "Keratinocyte differentiation factor 1", "gene_name": "Kdf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRPGQPRPSSGPPRLGPWERPSELCLETNDERSQPPPGRRTRRPDPKDPGHHGPESITFISGSAEPANEPPTCCLLWRPWGWDWCRAAFCFRRCRDCLQRCGACVRGCSPCLSAGDPIEGSAEAAWAKEHNGVPPSPDRAPPSRRDGQRLKTSMGSSFSYPDVKLKGIPVYPYRHATSPVPDVDSCCKEPLAEPPPTRHSLPSTFTNSPRGSEEYYSFHESDLDLPEMGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLISSITQDYHLDEQDAEGRLVRGIIRISTRKSRSRPQTSEGRSARSTAPAAAPDSGHETMLGSGLSQDELTVQISQETTADAIARKLRPYGAPGYPASQDSSFQGTDTDSSGAPLLQVYC", "length": 397 }, "evidence": [ { "id": "F1STQ5", "url": "https://omabrowser.org/oma/group/F1STQ5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1NE75-1", "protein_name": "Keratinocyte differentiation factor 1", "gene_name": "KDF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLGRKAGPPHNLNSHRQKNQSYQQAVPPRSRPSKEAEVGLEVLGGLTPEIKQSRTRAQQMRDRKGRKADLKDSNGREAETITFISGTAEAPANQSFCCSSLSHAWKTYKAVFCCIVTCGGCFQDCSVCIPYPGPAETSTDDGKNGDYNGRLPNSPANVSPTEKNGNQIKKSHMGSSFSYPDVKLKGIPVYQNRSLGHHVESDSCFKELLPEKPFRNSIEKPPLPSSHRSSEEYYSFHESDLDISELNGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTNKISDLINSITQDYNLDEQDAECRLVRGIIRISTRKSRVRPHISVPASQSHEEKSSRGNAPDSGNETMLESTVISQDDLAVQISEETPADVLARNMRRHSSAGSPTSRDSSFQDTETDSSGAPLLQVYC", "length": 417 }, "evidence": [ { "id": "F1STQ5", "url": "https://omabrowser.org/oma/group/F1STQ5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6AY88-1", "protein_name": "Keratinocyte differentiation factor 1", "gene_name": "Kdf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRPGQPRPSSGPPRLGPWERPTELCLETNDERSQPPPGRRTRRPDPKDPGHHGPESITFISGSAEPANEPPTCCLLWRPWGWDWCRAAFCFRRCRDCLQRCGACVRSCSPCLSAGDPIEGSSEAAWAKEHNGVPPSPDRAPPSRRDGQKLKTSMGSSFSYPDVKLKGIPVYPYRHATSPVPDADSCCKEPLADPPPTRHSLPSTFTSSPRGSEEYYSFHESDLDLPEMGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLISSITQDYHLDEQDAEGRLVRGIIRISTRKSRSRPQTSEGRSARSTAPAAAPDSGHETMVGSGLSQDELTVQISQETTADAIARKLRPYGAPGYPASQDSSFQGTDTDSSGAPLLQVYC", "length": 397 }, "evidence": [ { "id": "F1STQ5", "url": "https://omabrowser.org/oma/group/F1STQ5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NAX2-1", "protein_name": "Keratinocyte differentiation factor 1", "gene_name": "KDF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPRPGHPRPASGPPRLGPWERPTELCLETYDKPPQPPPSRRTRRPDPKDPGHHGPESITFISGSAEPALESPTCCLLWRPWVWEWCRAAFCFRRCRDCLQRCGACVRGCSPCLSTEDSTEGTAEANWAKEHNGVPPSPDRAPPSRRDGQRLKSTMGSSFSYPDVKLKGIPVYPYPRATSPAPDADSCCKEPLADPPPMRHSLPSTFASSPRGSEEYYSFHESDLDLPEMGSGSMSSREIDVLIFKKLTELFSVHQIDELAKCTSDTVFLEKTSKISDLISSITQDYHLDEQDAEGRLVRGIIRISTRKSRARPQTSEGRSTRAAAPTAAAPDSGHETMVGSGLSQDELTVQISQETTADAIARKLRPYGAPGYPASHDSSFQGTDTDSSGAPLLQVYC", "length": 398 }, "evidence": [ { "id": "F1STQ5", "url": "https://omabrowser.org/oma/group/F1STQ5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "limb epidermis development", "id": "GO:0060887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060887", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" }, { "name": "negative regulation of stem cell proliferation", "id": "GO:2000647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000647", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" }, { "name": "establishment of skin barrier", "id": "GO:0061436", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061436", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" }, { "name": "morphogenesis of embryonic epithelium", "id": "GO:0016331", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016331", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" }, { "name": "keratinocyte development", "id": "GO:0003334", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003334", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" }, { "name": "regulation of epidermal cell division", "id": "GO:0010482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010482", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" }, { "name": "positive regulation of epidermal cell differentiation", "id": "GO:0045606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045606", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" }, { "name": "developmental growth", "id": "GO:0048589", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048589", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" }, { "name": "cell junction", "id": "GO:0030054", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030054", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" }, { "name": "cell leading edge", "id": "GO:0031252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031252", "evidence": [ { "database": "UniProtKB", "id": "F1STQ5", "url": "https://www.uniprot.org/uniprotkb/F1STQ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STR4-1", "uniprot_ac": "F1STR4", "uniprot_id": "F1STR4_PIG", "mass": { "chemical_mass": 42825.0, "monoisotopic_mass": 42825.0 }, "refseq": { "ac": "XP_003129779", "name": "serine protease 23 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129779" }, "gene_names": [ { "name": "PRSS23", "type": "recommended", "evidence": [ { "id": "F1STR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STR4" } ] }, { "name": "PRSS23", "type": "synonym", "evidence": [ { "id": "XP_003129779", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129779" } ] } ], "protein_names": [ { "name": "Serine protease 23", "type": "recommended", "evidence": [ { "id": "F1STR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STR4/entry#names_and_taxonomy" } ] }, { "name": "serine protease 23 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003129779", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129779" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STR4", "url": "https://www.uniprot.org/uniprotkb/F1STR4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PRSS23", "url": "https://www.uniprot.org/uniprotkb/F1STR4", "locus": { "chromosome": "9", "start_pos": 20625139, "end_pos": 20603733, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014921", "url": "https://www.ensembl.org/id/ENSSSCG00000014921" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014921", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014921", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520683", "url": "https://www.ncbi.nlm.nih.gov/gene/100520683", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050966", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050966", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520683", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520683", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WIKGNFM", "url": "https://omabrowser.org/oma/group/WIKGNFM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STR4", "url": "https://www.orthodb.org/?gene=F1STR4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15462", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15462", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15462:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15462:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-381426", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8957275", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003129779", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129779", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STR4", "url": "https://www.uniprot.org/uniprotkb/F1STR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STR4-1", "url": "https://www.uniprot.org/uniprotkb/F1STR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGMAGTPGLLFALLFLVLLCAVGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGAEAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKYAQICYWIKGNYLDCREG", "length": 381, "header": "tr|F1STR4-1|F1STR4_PIG Isoform 1 of Serine protease 23 OS=Sus scrofa OX=9823 GN=PRSS23 PE=3 SV=2 CANONICAL=F1STR4-1" }, "isoforms": [ { "isoform_ac": "F1STR4-1", "url": "https://www.uniprot.org/uniprotkb/F1STR4/entry#F1STR4-1", "sequence": { "sequence": "MLGMAGTPGLLFALLFLVLLCAVGQVSPYSAHWKPTWPAYRLPVVLPQSTFNLAKPDFGAEAKLEVSSSCGPQCHKGTPLPTYEEVKQYLSYETLYANGSRTETQVGIYVLRSGEGEASGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGRGANNSSSAVPEKMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKYAQICYWIKGNYLDCREG", "length": 381, "header": "tr|F1STR4-1|F1STR4_PIG Isoform 1 of Serine protease 23 OS=Sus scrofa OX=9823 GN=PRSS23 PE=3 SV=2 CANONICAL=F1STR4-1" }, "locus": { "chromosome": "9", "start_pos": 20622957, "end_pos": 20621815, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000079260.1", "url": "https://www.ensembl.org/id/ENSSSCT00000079260.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000066983.1", "url": "https://www.ensembl.org/id/ENSSSCP00000066983.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STR4", "url": "https://www.uniprot.org/uniprotkb/F1STR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520683", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520683", "resource": "KEGG Pathway" }, { "id": "R-SSC-381426", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-381426", "resource": "Reactome", "description": "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" }, { "id": "R-SSC-8957275", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8957275", "resource": "Reactome", "description": "Post-translational protein phosphorylation" } ], "orthologs": [ { "uniprot_canonical_ac": "E1C744-1", "protein_name": "Serine protease 23", "gene_name": "PRSS23", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGLTTLILLLCAAKDVMPSSPHWKPTWPSYRVPVILPQSTFHLDKPQFDAEARLEVASPCGPECHKSSPLPTYEEVKNYLSYETLYANGSLTETEVGIYILSSGGDESRGKSRTKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKSYVKGAQKLRVGFLKPRGKNGSKGANITSSAMPEKMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPARHLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQNHKWERKIIGIFSGHQWVDMNGTPQDFNVAVRITPLKYAQICYWIKGNYLDCREG", "length": 372 }, "evidence": [ { "id": "F1STR4", "url": "https://omabrowser.org/oma/group/F1STR4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3IEM1-1", "protein_name": "Serine protease 23", "gene_name": "Prss23", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGIPGLFTLLLLLLCVFREVSPSSSPWKPTWPAYRLPVILPQSTLNLAKPDFDAKAKLEVSSSCGPQCHKGTPLPTYEEAKQYLSYETLYTNGSRTETQVGIYILSNGEGRTHGRDSEATGKSRRKRQIYGYDGRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKYKDGGRGDNSSSSAVPDKMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRPQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKYAQICYWIKGNYLDCREG", "length": 383 }, "evidence": [ { "id": "F1STR4", "url": "https://omabrowser.org/oma/group/F1STR4/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O95084-1", "protein_name": "Serine protease 23", "gene_name": "PRSS23", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGIPGLLFLLFFLLCAVGQVSPYSAPWKPTWPAYRLPVVLPQSTLNLAKPDFGAEAKLEVSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETQVGIYILSSSGDGAQHRDSGSSGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGGRGANDSTSAMPEQMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKYAQICYWIKGNYLDCREG", "length": 383 }, "evidence": [ { "id": "F1STR4", "url": "https://omabrowser.org/oma/group/F1STR4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LZE9-1", "protein_name": "Serine protease 23", "gene_name": "PRSS23", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAGTPGHPIFLLLLLRAIGQVSPYSTHWKPTWPAYRLPVVLPQSTFNLAKPDFGAEAKLEVSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETQVGIYVLRSGEEQSSGKSRRKRQIYGYDSRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKFKDGRGANDSHSALPEKMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVQDETYDLLYQQCDAQPGASGSGVYVRMWKRQQQKWERKIIGIFSGHQWVDVNGSPQDFNVAVRITPLKYAQICYWIKGNYVDCREG", "length": 375 }, "evidence": [ { "id": "F1STR4", "url": "https://omabrowser.org/oma/group/F1STR4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AY61-1", "protein_name": "Serine protease 23", "gene_name": "Prss23", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGIPGLLILLLVLLCVFMQVSPYNVPWKPTWPAYRLPIVLPQSTLKLAKPDFDAKAKLEVSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETQVGIYILSNGEGRARSRDSEAAGKSRRKRQIYGYDGRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKYKDGAGGDNSSSSALVEKMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRKFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRPQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKYAQICYWIKGNYLDCREG", "length": 383 }, "evidence": [ { "id": "F1STR4", "url": "https://omabrowser.org/oma/group/F1STR4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D6X6-1", "protein_name": "Serine protease 23", "gene_name": "Prss23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAGIPGLFILLVLLCVFMQVSPYTVPWKPTWPAYRLPVVLPQSTLNLAKADFDAKAKLEVSSSCGPQCHKGTPLPTYEEAKQYLSYETLYANGSRTETRVGIYILSNGEGRARGRDSEATGRSRRKRQIYGYDGRFSIFGKDFLLNYPFSTSVKLSTGCTGTLVAEKHVLTAAHCIHDGKTYVKGTQKLRVGFLKPKYKDGAGGDNSSSSAMPDKMKFQWIRVKRTHVPKGWIKGNANDIGMDYDYALLELKKPHKRQFMKIGVSPPAKQLPGGRIHFSGYDNDRPGNLVYRFCDVKDETYDLLYQQCDAQPGASGSGVYVRMWKRPQQKWERKIIGIFSGHQWVDMNGSPQDFNVAVRITPLKYAQICYWIKGNYLDCREG", "length": 382 }, "evidence": [ { "id": "F1STR4", "url": "https://omabrowser.org/oma/group/F1STR4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1STR4", "url": "https://www.uniprot.org/uniprotkb/F1STR4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1STR4", "url": "https://www.uniprot.org/uniprotkb/F1STR4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1STR4", "url": "https://www.uniprot.org/uniprotkb/F1STR4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1STR4", "url": "https://www.uniprot.org/uniprotkb/F1STR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 98, "end_pos": 100, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STR4" }, { "id": "PF00089", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S1", "eco_id": "ECO_0000259", "start_pos": 146, "end_pos": 287, "start_aa": "Tyr", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 205, "end_pos": 207 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 347, "end_pos": 349 }, { "start_pos": 98, "end_pos": 100 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STR7-1", "uniprot_ac": "F1STR7", "uniprot_id": "F1STR7_PIG", "mass": { "chemical_mass": 28543.0, "monoisotopic_mass": 28543.0 }, "refseq": { "ac": "XP_003127768", "name": "nuclear receptor subfamily 0 group B member 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127768" }, "gene_names": [ { "name": "NR0B2", "type": "recommended", "evidence": [ { "id": "F1STR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ] }, { "name": "NR0B2", "type": "synonym", "evidence": [ { "id": "XP_003127768", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127768" } ] } ], "protein_names": [ { "name": "Nuclear receptor subfamily 0 group B member 2", "type": "recommended", "evidence": [ { "id": "F1STR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STR7/entry#names_and_taxonomy" } ] }, { "name": "Orphan nuclear receptor SHP", "type": "synonym", "evidence": [ { "id": "F1STR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STR7/entry#names_and_taxonomy" } ] }, { "name": "Small heterodimer partner", "type": "synonym", "evidence": [ { "id": "F1STR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STR7/entry#names_and_taxonomy" } ] }, { "name": "nuclear receptor subfamily 0 group B member 2", "type": "synonym", "evidence": [ { "id": "XP_003127768", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127768" } ] } ], "function": [ { "annotation": "Transcriptional regulator that acts as a negative regulator of receptor-dependent signaling pathways. Specifically inhibits transactivation of the nuclear receptor with which it interacts. Inhibits transcriptional activity of NEUROD1 on E-box-containing promoter by interfering with the coactivation function of the p300/CBP-mediated transcription complex for NEUROD1. Essential component of the liver circadian clock which via its interaction with NR1D1 and RORG regulates NPAS2-mediated hepatic lipid metabolism. Regulates the circadian expression of cytochrome P450 (CYP) enzymes. Represses: NR5A2 and HNF4A to down-regulate CYP2C38, NFLI3 to up-regulate CYP2A5, BHLHE41/HNF1A axis to up-regulate CYP1A2, CYP2E1 and CYP3A11, and NR1D1 to up-regulate CYP2B10, CYP4A10 and CYP4A14.", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7#function" }, { "database": "UniProtKB", "id": "ARBA00056248", "url": "https://www.uniprot.org/uniprotkb/ARBA00056248#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NR0B2", "url": "https://www.uniprot.org/uniprotkb/F1STR7", "locus": { "chromosome": "6", "start_pos": 84228481, "end_pos": 84225694, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003565", "url": "https://www.ensembl.org/id/ENSSSCG00000003565" } ] } } ], "crossref": [ { "id": "F1STR7", "url": "https://alphafold.ebi.ac.uk/entry/F1STR7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003565", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003565", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100526226", "url": "https://www.ncbi.nlm.nih.gov/gene/100526226", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033544", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033544", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100526226", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526226", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FFRPIVG", "url": "https://omabrowser.org/oma/group/FFRPIVG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STR7", "url": "https://www.orthodb.org/?gene=F1STR7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24081", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24081", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24081:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24081:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00104", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00104", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-383280", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003127768", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127768", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STR7-1", "url": "https://www.uniprot.org/uniprotkb/F1STR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSRQPGTCPCQSAAGRPTILYALLSPSDRDRPSVPPARSHCLCRQHRPVRLCTPHRTCQEALNVLAKTLAFLRNLPSFCQLPPQDQRQLLRGCWGPLFLLGLAQDIVTFEVAEVPVPSILKKILLEEPSSGAGSGQPLDRPQPSLAAVQWLQCCLESLWSLELGPKEYAYLKGTILFNPDVPGLYASSHIGHLQHEAHQALWEVLEPWCPAGQSRLARVLLAASTLKSIPPTLLGDLFFRPVIGDVDIVGLLEDMLLLS", "length": 260, "header": "tr|F1STR7-1|F1STR7_PIG Isoform 1 of Nuclear receptor subfamily 0 group B member 2 OS=Sus scrofa OX=9823 GN=NR0B2 PE=3 SV=1 CANONICAL=F1STR7-1" }, "isoforms": [ { "isoform_ac": "F1STR7-1", "url": "https://www.uniprot.org/uniprotkb/F1STR7/entry#F1STR7-1", "sequence": { "sequence": "MSSRQPGTCPCQSAAGRPTILYALLSPSDRDRPSVPPARSHCLCRQHRPVRLCTPHRTCQEALNVLAKTLAFLRNLPSFCQLPPQDQRQLLRGCWGPLFLLGLAQDIVTFEVAEVPVPSILKKILLEEPSSGAGSGQPLDRPQPSLAAVQWLQCCLESLWSLELGPKEYAYLKGTILFNPDVPGLYASSHIGHLQHEAHQALWEVLEPWCPAGQSRLARVLLAASTLKSIPPTLLGDLFFRPVIGDVDIVGLLEDMLLLS", "length": 260, "header": "tr|F1STR7-1|F1STR7_PIG Isoform 1 of Nuclear receptor subfamily 0 group B member 2 OS=Sus scrofa OX=9823 GN=NR0B2 PE=3 SV=1 CANONICAL=F1STR7-1" }, "locus": { "chromosome": "6", "start_pos": 84227785, "end_pos": 84225733, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003959.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003959.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003868.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003868.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100526226", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100526226", "resource": "KEGG Pathway" }, { "id": "R-SSC-383280", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-383280", "resource": "Reactome", "description": "Nuclear Receptor transcription pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BML7-1", "protein_name": "Nuclear receptor subfamily 0 group B member 2", "gene_name": "NR0B2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSSSQPGPCPCQGAAGHPTILYTLLSPRVRDRPSVAPARGRCLCRQHRPVQLCTPHRTCREALDVLAKTLAFLRNLPSFCQLPHHDRRQLLRGCWGPLFLLGLAQDTVTFQVAEVPMPSILKKILLEKPSNGAGSSQRPDRPQPSLAEVQWLQCCLESFWSLELGPKEYAYLKGTILFNPDVPGLYASSHIGHLQQEAHQALWEVLEPWCPAGQSRLARVLLTASTLKSIPPSLLGDLFLRPVIGDVDIADLLEDMLLLS", "length": 260 }, "evidence": [ { "id": "F1STR7", "url": "https://omabrowser.org/oma/group/F1STR7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P97947-1", "protein_name": "Nuclear receptor subfamily 0 group B member 2", "gene_name": "Nr0b2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSSQSGVCPCQGSASHPTILYTLLSPGPRTRPMAPASRSHCLCQQHRPVRLCAPHRTCREALDVLGKTVAFLRNLPSFCLLPHEDQRRLLEGCWGPLFLLGLAQDTVTFEVAEAPVPSILKKILLEEPNSGAQGAQPPDPPQPSLAAVQWLQHCLESFWSLELGPKEYAYLKGTILFNPDVPGLHASCHIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNISCTLLVDLFFRPVIGDVDITELLEDMLLLR", "length": 260 }, "evidence": [ { "id": "F1STR7", "url": "https://omabrowser.org/oma/group/F1STR7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q15466-1", "protein_name": "Nuclear receptor subfamily 0 group B member 2", "gene_name": "NR0B2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSTSQPGACPCQGAASRPAILYALLSSSLKAVPRPRSRCLCRQHRPVQLCAPHRTCREALDVLAKTVAFLRNLPSFWQLPPQDQRRLLQGCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEPSSSGGSGQLPDRPQPSLAAVQWLQCCLESFWSLELSPKEYACLKGTILFNPDVPGLQAASHIGHLQQEAHWVLCEVLEPWCPAAQGRLTRVLLTASTLKSIPTSLLGDLFFRPIIGDVDIAGLLGDMLLLR", "length": 257 }, "evidence": [ { "id": "F1STR7", "url": "https://omabrowser.org/oma/group/F1STR7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q62227-1", "protein_name": "Nuclear receptor subfamily 0 group B member 2", "gene_name": "Nr0b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSGQSGVCPCQGSAGRPTILYALLSPSPRTRPVAPASHSHCLCQQQRPVRLCAPHRTCREALDVLAKTVAFLRNLPSFCHLPHEDQRRLLECCWGPLFLLGLAQDAVTFEVAEAPVPSILKKILLEEASSGTQGAQPSDRPQPSLAAVQWLQRCLESFWSLELGPKEYAYLKGTILFNPDVPGLRASCHIAHLQQEAHWALCEVLEPWYPASQGRLARILLMASTLKNIPGTLLVDLFFRPIMGDVDITELLEDMLLLR", "length": 260 }, "evidence": [ { "id": "F1STR7", "url": "https://omabrowser.org/oma/group/F1STR7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "positive regulation of gene expression", "id": "GO:0010628", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010628", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "negative regulation of gene expression", "id": "GO:0010629", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010629", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "circadian regulation of gene expression", "id": "GO:0032922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032922", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "protein domain specific binding", "id": "GO:0019904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "transcription corepressor activity", "id": "GO:0003714", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003714", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "nuclear receptor binding", "id": "GO:0016922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016922", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" }, { "name": "transcription regulator inhibitor activity", "id": "GO:0140416", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140416", "evidence": [ { "database": "UniProtKB", "id": "F1STR7", "url": "https://www.uniprot.org/uniprotkb/F1STR7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STR7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 260, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STR7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STR7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STR7" }, { "id": "PS51843", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51843" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NR LBD", "eco_id": "ECO_0000259", "start_pos": 16, "end_pos": 260, "start_aa": "Gly", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STT3-1", "uniprot_ac": "F1STT3", "uniprot_id": "F1STT3_PIG", "mass": { "chemical_mass": 43159.0, "monoisotopic_mass": 43159.0 }, "refseq": { "ac": "XP_003129771", "name": "coiled-coil domain-containing protein 89", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129771" }, "gene_names": [ { "name": "CCDC89", "type": "recommended", "evidence": [ { "id": "F1STT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STT3" } ] }, { "name": "CCDC89", "type": "synonym", "evidence": [ { "id": "XP_003129771", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129771" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 89", "type": "recommended", "evidence": [ { "id": "F1STT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STT3/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 89", "type": "synonym", "evidence": [ { "id": "XP_003129771", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129771" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STT3", "url": "https://www.uniprot.org/uniprotkb/F1STT3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CCDC89", "url": "https://www.uniprot.org/uniprotkb/F1STT3", "locus": { "chromosome": "9", "start_pos": 19603230, "end_pos": 19609004, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000062997", "url": "https://www.ensembl.org/id/ENSSSCG00000062997" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014908", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014908", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519041", "url": "https://www.ncbi.nlm.nih.gov/gene/100519041", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060354", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060354", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519041", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519041", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AMLCSRI", "url": "https://omabrowser.org/oma/group/AMLCSRI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1STT3", "url": "https://www.orthodb.org/?gene=F1STT3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34768", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34768", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34768:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34768:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28422", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28422", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129771", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129771", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STT3", "url": "https://www.uniprot.org/uniprotkb/F1STT3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STT3-1", "url": "https://www.uniprot.org/uniprotkb/F1STT3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPQEETALGMDAPSAEKLLEKQNKKLENQEEEGLEFKELDGLREALANLRGLSEEEKGEKAMLCSRIQEQSQLICILKRRSDEALERCQVLELLNAELEEKRMLEAEKLKAKSEHAEKLEERFMTLAANHELMIRFKDEHKNQNIKLREENEKLRLENDHLFSQALKDQEVKVAQLTAQSEALAKELETLKQRSAQDACQAQAREKELLKLQSQQACAHARETEQLRSQLQSLKQQHQQATEQMAKAEQAHSLLNQELQARLQTVSREKEELLQLSMERGKVLQNKQAEIRQLEDKLETADVARRHAVERFEQEAVAVDSNLRVRELQRRVDGIQKAYDELRLQSEAFKRHSLDLLSKERELNAKLRHLFP", "length": 371, "header": "tr|F1STT3-1|F1STT3_PIG Isoform 1 of Coiled-coil domain-containing protein 89 OS=Sus scrofa OX=9823 GN=CCDC89 PE=3 SV=2 CANONICAL=F1STT3-1" }, "isoforms": [ { "isoform_ac": "F1STT3-1", "url": "https://www.uniprot.org/uniprotkb/F1STT3/entry#F1STT3-1", "sequence": { "sequence": "MPQEETALGMDAPSAEKLLEKQNKKLENQEEEGLEFKELDGLREALANLRGLSEEEKGEKAMLCSRIQEQSQLICILKRRSDEALERCQVLELLNAELEEKRMLEAEKLKAKSEHAEKLEERFMTLAANHELMIRFKDEHKNQNIKLREENEKLRLENDHLFSQALKDQEVKVAQLTAQSEALAKELETLKQRSAQDACQAQAREKELLKLQSQQACAHARETEQLRSQLQSLKQQHQQATEQMAKAEQAHSLLNQELQARLQTVSREKEELLQLSMERGKVLQNKQAEIRQLEDKLETADVARRHAVERFEQEAVAVDSNLRVRELQRRVDGIQKAYDELRLQSEAFKRHSLDLLSKERELNAKLRHLFP", "length": 371, "header": "tr|F1STT3-1|F1STT3_PIG Isoform 1 of Coiled-coil domain-containing protein 89 OS=Sus scrofa OX=9823 GN=CCDC89 PE=3 SV=2 CANONICAL=F1STT3-1" }, "locus": { "chromosome": "9", "start_pos": 19608966, "end_pos": 19607854, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000103233.1", "url": "https://www.ensembl.org/id/ENSSSCT00000103233.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000079976.1", "url": "https://www.ensembl.org/id/ENSSSCP00000079976.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STT3", "url": "https://www.uniprot.org/uniprotkb/F1STT3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519041", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519041", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IGN7-1", "protein_name": "Coiled-coil domain-containing protein 89", "gene_name": "Ccdc89", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPQDEQTLRMDNPTPDESLGKQNENLQNQDEELGFKEMDGLREALANLRGLSEEEKGEKAMLRSRIQEQSQLICILKRRSDEALERCQILELLNNELEEKRMQEIEKMKVQSDHVQKLEDRFMTLAANHEMMIRFKDEHKNANLKLKEENEKLKQENSNLFSQALKDQEAKILQLTANNKALVEELEVLKLRCAHDTSQAQAREKELLGLQTQQACAHAKETEQLLSQLQSLKQLHRQATNKMAKDQEEHSSLSQDLQTRLQTVTREKEELLQLSMERGKVLQNKQAEIRQLEEKLETAAMAKKHALERFEQEAVAVDSNLRVRELQRRVDGIQKAYDELRLQSEAFKKHSLDLLSKERELNAKLRHLFP", "length": 370 }, "evidence": [ { "id": "F1STT3", "url": "https://omabrowser.org/oma/group/F1STT3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A1L1RQX0-1", "protein_name": "Coiled-coil domain-containing protein 89", "gene_name": "CCDC89", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAACFGRNQSSSSGSVSMAHEDGEAVVANHTSDAEMGKDTEDPTKGTQTLCGSPEEKREKALLRARLEEQHRLICILKKKTDDARKRCKSLEQLNMELEKLRLEDAVKLKTQTQRIQYLEDLANNQEKMIYSKDEQEKQNTQLKEENQRLQQENKTLFSQAAKDNEAEMLQLAAQARELLQQLDTLHEKCAWERSRAQQLEKELLEAQSQQAHACTLEVDSLRQQLQRLQEEHQQMVEQLEHGESQQKAHDAELQAKLERANEEKEQLLNLAAERGKALQEKQQEILQLGRKLEMAERAKWRAEKHIVKEVAANYGLKVQELQQELKSSQQAYSKLSLQFDAYKKHSMDLLSKEKALNVKLRHFKA", "length": 366 }, "evidence": [ { "id": "F1STT3", "url": "https://omabrowser.org/oma/group/F1STT3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "B2RZ86-1", "protein_name": "Coiled-coil domain-containing protein 89", "gene_name": "Ccdc89", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPQKEKTLRMDTPPPDEILGRQNENLENEDDELGFKEMDGLREALANLRGLSEEEKGEKAMLRSRIQEQSQLICILKRRSDEALERCQILELLNSELEEKRMQEMEKMKVQNEQVQKLESRFMTLAANHELMIRFKDEHKSENIKLKEENEKLRQENNSLFSQALKDQENKVLQLTAHNKALVEELEVLKQRCAHEAGQARAREEELLALQNQQACEHAKETEQLRSQLQSIKQQHRQATEQMGKDQEANINMNQELQARLHTVMREKEELLQLSMERGKVLQNKQAEIRQLEEKLETAAMAKKHALERFEQEAVAVDSNLRVRELQRKVDGIQKAYDDLRLQSEAFKKHSLDLLSKERELNAKLRHLFP", "length": 370 }, "evidence": [ { "id": "F1STT3", "url": "https://omabrowser.org/oma/group/F1STT3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q29RS0-1", "protein_name": "Coiled-coil domain-containing protein 89", "gene_name": "CCDC89", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPQEESAPRMDTPSSEEPLDKQNRKLEDQEEEMGFKELDGLREALANLRGLSEEDKSERAMLCSRIQEQSQLICILKRRSDEALERCQTLELLNTELEEKRLLEAEELKAKNQQAQKLEERFMTLASNHELMIRFKDEHKRQNAKLREENEKLRLENDQLFSPALKAQEAKVVQLTAQSEALAKELETLQRKYAHDVCQAQAREQELLELQNRQACAHTEETEQLRMQLQSLQQQQQEALQQTAKAEQAHSQQNQELRARLQTVTREKEELLLLSMERGRVLQNKQAEIRQLEEKLKMADVARRHALERFEQEAVAVNSNLRVRELQRRVDGIQAAYDELRLQSEAFKKHSLDLLSKERELNAKLRHLFP", "length": 370 }, "evidence": [ { "id": "F1STT3", "url": "https://omabrowser.org/oma/group/F1STT3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8N998-1", "protein_name": "Coiled-coil domain-containing protein 89", "gene_name": "CCDC89", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRAPMLQKQQAPRMDTPPPEERLEKQNEKLNNQEEETEFKELDGLREALANLRGLSEEERSEKAMLRSRIEEQSQLICILKRRSDEALERCQILELLNAELEEKMMQEAEKLKAQGEYSRKLEERFMTLAANHELMLRFKDEYKSENIKLREENEKLRLENSSLFSQALKDEEAKVLQLTVRCEALTGELETLKERCAQDACQAQAREKELLELQSQQACTHTKETEQLRSQLQTLKQQHQQAVEQIAKAEETHSSLSQELQARLQTVTREKEELLQLSIERGKVLQNKQAEICQLEEKLEIANEDRKHALERFEQEAVAVDSNLRVRELQRKVDGIQKAYDELRLQSEAFKKHSLDLLSKERELNGKLRHLSP", "length": 374 }, "evidence": [ { "id": "F1STT3", "url": "https://omabrowser.org/oma/group/F1STT3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DA73-1", "protein_name": "Coiled-coil domain-containing protein 89", "gene_name": "Ccdc89", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPQEEKTLRMDTPPPDEILGKQNENLQNQDEELGFKEMDGLREALANLRGLSEEEKGEKAMLRSRIQEQSQLICILKRRSDEALERCQILELLNSELEEKRLQEMEKLKAQSEHIQKLENHFMILASNHEQMIRFKDAHKSENVKLKEENARLRQENNSLFSQALKDQEAKVLELTTLNKALVEELEVLKQRCAHEASQAQAREEELLGLQNQQACDHAKETEELRSQLQSIKQQHQQATEQMGKEQEANLNLNQELQARLQTVLREKEELLQLSMERGKVLQNKQAEIRQLEEKLETAAMAKKHALERFEQEAVAVDSNLRVRELQRRVDGIQKAYDELRLQSEAFKKHSLDLLSKERELNAKLRHLFP", "length": 370 }, "evidence": [ { "id": "F1STT3", "url": "https://omabrowser.org/oma/group/F1STT3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1STT3", "url": "https://www.uniprot.org/uniprotkb/F1STT3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STT3", "url": "https://www.uniprot.org/uniprotkb/F1STT3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STT5-1", "uniprot_ac": "F1STT5", "uniprot_id": "F1STT5_PIG", "mass": { "chemical_mass": 64338.0, "monoisotopic_mass": 64338.0 }, "refseq": {}, "gene_names": [ { "name": "SELENON", "type": "recommended", "evidence": [ { "id": "F1STT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ] } ], "protein_names": [ { "name": "Selenoprotein N", "type": "synonym", "evidence": [ { "id": "F1STT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STT5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SELENON", "url": "https://www.uniprot.org/uniprotkb/F1STT5", "locus": { "chromosome": "6", "start_pos": 83262743, "end_pos": 83246934, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003554", "url": "https://www.ensembl.org/id/ENSSSCG00000003554" } ] } } ], "crossref": [ { "id": "F1STT5", "url": "https://alphafold.ebi.ac.uk/entry/F1STT5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003554", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003554", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EITWQQE", "url": "https://omabrowser.org/oma/group/EITWQQE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16213", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16213", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16213:SF78", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16213:SF78", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STT5-1", "url": "https://www.uniprot.org/uniprotkb/F1STT5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRARPGERGPPSPGPAEPPAPPPRRGRILALLGALFAAAAAAAAARAFARHSEAQAPRALKALGTEGLFLFSSLDTDQDMYISPEEFKPIAEKLTGTRRAWGLGRRRQGPLSSDLCLVGSTPSASYEEEELPPDPSEETLTIEARFQPLLPESMTKSKDGFLGVSRLALSGLRNWTSAASPSAVFAARHFRPFLPPRGHVELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEAMGPSVPSVILDEDGNMIDSRLPSGEPLQFVFEEIKWQQELSWEEATRRLEVAMYPFKKVTYLPFTEAFEQAQAKNKLVHSILLWGALDDQSCSGRTLRETVLESSPILTLLNESFISTWSLVKELEDLQNNQENPSHKKLAGLHLEKYSFPVEMMICLPNGTVVHHINANYFLDITSMKPQDIENNVFSFSSTFEDPSTATYMQFLQEGLRRGLPLLQP", "length": 574, "header": "tr|F1STT5-1|F1STT5_PIG Isoform 1 of Selenoprotein N OS=Sus scrofa OX=9823 GN=SELENON PE=4 SV=5 CANONICAL=F1STT5-1" }, "isoforms": [ { "isoform_ac": "F1STT5-1", "url": "https://www.uniprot.org/uniprotkb/F1STT5/entry#F1STT5-1", "sequence": { "sequence": "MGRARPGERGPPSPGPAEPPAPPPRRGRILALLGALFAAAAAAAAARAFARHSEAQAPRALKALGTEGLFLFSSLDTDQDMYISPEEFKPIAEKLTGTRRAWGLGRRRQGPLSSDLCLVGSTPSASYEEEELPPDPSEETLTIEARFQPLLPESMTKSKDGFLGVSRLALSGLRNWTSAASPSAVFAARHFRPFLPPRGHVELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEAMGPSVPSVILDEDGNMIDSRLPSGEPLQFVFEEIKWQQELSWEEATRRLEVAMYPFKKVTYLPFTEAFEQAQAKNKLVHSILLWGALDDQSCSGRTLRETVLESSPILTLLNESFISTWSLVKELEDLQNNQENPSHKKLAGLHLEKYSFPVEMMICLPNGTVVHHINANYFLDITSMKPQDIENNVFSFSSTFEDPSTATYMQFLQEGLRRGLPLLQP", "length": 574, "header": "tr|F1STT5-1|F1STT5_PIG Isoform 1 of Selenoprotein N OS=Sus scrofa OX=9823 GN=SELENON PE=4 SV=5 CANONICAL=F1STT5-1" }, "locus": { "chromosome": "6", "start_pos": 83260990, "end_pos": 83246934, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003948.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003948.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003857.5", "url": "https://www.ensembl.org/id/ENSSSCP00000003857.5" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 122, "start_aa": "Thr", "end_pos": 122, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr122", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "D3Z2R5-1", "protein_name": "Selenoprotein N", "gene_name": "Selenon", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQARPAARRPHSPDPGAQPAPPRRRARALALLGALLAAAAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSLDTDQDMYISPEEFKPIAEKLTGSVPVANYEEEELPHDPSEETLTIEARFQPLLMETMTKSKDGFLGVSRLALSGLRNWTTAASPSAAFAARHFRPFLPPPGQELGQPWWIIPGELSVFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGTVACLTAISDSYYTVMFRIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHRSLNVDMEWLYGASETSNMEVDIGYVPQMELEAVGPSVPSVILDEDGNMIDSRLPSGEPLQFVFEEIKWHQELSWEEAARRLEVAMYPFKKVNYLPFTEAFDRARAEKKLVHSILLWGALDDQSCUGSGRTLRETVLESPPILTLLNESFISTWSLVKELEDLQTQQENPLHRQLAGLHLEKYSFPVEMMICLPNGTVVHHINANYFLDITSMKPEDMENNNVFSFSSSFEDPSTATYMQFLREGLRRGLPLLQP", "length": 557 }, "evidence": [ { "id": "F1STT5", "url": "https://omabrowser.org/oma/group/F1STT5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LTZ2-1", "protein_name": "Selenoprotein N", "gene_name": "Selenon", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARALPDERRPHSPDPGAQPAPPRRRARALALLGALLAAIAAVAAARACALLADAQAAARQESALKVLGTDGLFLFSSLDTDQDSYISPEEFKPIAEKLTGSVPVASYEEEELPHDPSEETLTIEARFQPLLTETMTKSKDGFLGVSRLALSGLRNWTTAASPNAVFAARHFRPFLPPPGQELGQPWWIIPGELSVFTGYLSNNRFYPPPPKGKEVIIHRLLGMFHPRPFVKTRFAPQGTVACLTAVSDSYYTVMFRIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHIRDFRLFVPNHRSLNVDMEWLYGASETSNMEVDIGYIPQMELEAVGPSVPSVILDEDGNMIDSRLPSGEPLQFVFEEIKWHQELSWEEAARRLEVAMYPFKKVNYLPFTEAFDRAKAENKLVHSILLWGALDDQSCGSGRTLRETVLESPPILTLLNESFISTWSLVKELEDLQTQQGSPLHRQLAGLHLEKYSFPVEMLICLPNGTVVHHINANYFLDITSMKPEDMENTNVFSFSSTFEDPSTATYMQFLREGLRRGLPLLQP", "length": 556 }, "evidence": [ { "id": "F1STT5", "url": "https://omabrowser.org/oma/group/F1STT5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9NZV5-1", "protein_name": "Selenoprotein N", "gene_name": "SELENON", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLAAAAAAAVRVCARHAEAQAAARQELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLTGSCSVTQTGVQWCSHSSLQPQLPWLNUSSCLSLLRSTPAASCEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKVSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUGSGRTLRETVLESSPILTLLNESFISTWSLVKELEELQNNQENSSHQKLAGLHLEKYSFPVEMMICLPNGTVVHHINANYFLDITSVKPEEIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP", "length": 590 }, "evidence": [ { "id": "F1STT5", "url": "https://omabrowser.org/oma/group/F1STT5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial membrane", "id": "GO:0031966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031966", "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "pmid": "" }, { "name": "mitochondria-associated endoplasmic reticulum membrane contact site", "id": "GO:0044233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044233", "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "skeletal muscle fiber development", "id": "GO:0048741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048741", "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "pmid": "" }, { "name": "positive regulation of response to oxidative stress", "id": "GO:1902884", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902884", "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "pmid": "" }, { "name": "calcium ion homeostasis", "id": "GO:0055074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055074", "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "pmid": "" }, { "name": "skeletal muscle satellite cell maintenance involved in skeletal muscle regeneration", "id": "GO:0014834", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014834", "evidence": [ { "database": "UniProtKB", "id": "F1STT5", "url": "https://www.uniprot.org/uniprotkb/F1STT5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 515, "end_pos": 517, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1STT5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 574, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1STT5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1STT5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STT5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STT5" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 71, "end_pos": 98, "start_aa": "Leu", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 122 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 175, "end_pos": 177 }, { "start_pos": 467, "end_pos": 469 }, { "start_pos": 515, "end_pos": 517 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STU2-1", "uniprot_ac": "F1STU2", "uniprot_id": "F1STU2_PIG", "mass": { "chemical_mass": 36980.0, "monoisotopic_mass": 36980.0 }, "refseq": { "ac": "XP_005667255", "name": "CREB/ATF bZIP transcription factor isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667255" }, "gene_names": [ { "name": "CREBZF", "type": "recommended", "evidence": [ { "id": "F1STU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ] }, { "name": "CREBZF", "type": "synonym", "evidence": [ { "id": "XP_005667255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667255" } ] } ], "protein_names": [ { "name": "CREB/ATF bZIP transcription factor", "type": "recommended", "evidence": [ { "id": "F1STU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STU2/entry#names_and_taxonomy" } ] }, { "name": "CREB/ATF bZIP transcription factor isoform X2", "type": "synonym", "evidence": [ { "id": "XP_005667255", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667255" } ] }, { "name": "Host cell factor-binding transcription factor Zhangfei", "type": "synonym", "evidence": [ { "id": "F1STU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STU2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Strongly activates transcription when bound to HCFC1. Suppresses the expression of HSV proteins in cells infected with the virus in a HCFC1-dependent manner. Also suppresses the HCFC1-dependent transcriptional activation by CREB3 and reduces the amount of CREB3 in the cell. Able to down-regulate expression of some cellular genes in CREBZF-expressing cells.", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2#function" }, { "database": "UniProtKB", "id": "ARBA00054176", "url": "https://www.uniprot.org/uniprotkb/ARBA00054176#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CREBZF", "url": "https://www.uniprot.org/uniprotkb/F1STU2", "locus": { "chromosome": "9", "start_pos": 19593737, "end_pos": 19594801, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014907", "url": "https://www.ensembl.org/id/ENSSSCG00000014907" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014907", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014907", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100518742", "url": "https://www.ncbi.nlm.nih.gov/gene/100518742", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004827", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004827", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "F1STU2", "url": "https://www.orthodb.org/?gene=F1STU2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF00170", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00170", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005667255", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005667255", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STU2-1", "url": "https://www.uniprot.org/uniprotkb/F1STU2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRHSLTKLLAASGSDSPTRSESPAPAATFSLPPDLSRAAAEDEGTAAAGSPGRKQPRGNEGESEAGRGGRGGVAVRAPSPEEMEEEAVASVPGDETEDMDFLSGLELADLLDPRQPDWHLEPGLSSPGPLSSSGGGSESGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSGSDTGGGEKRRRKSPGGGGGSSGGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAVLANETGLARLLSRLSGVGLRLTTSLFRDSPAGDHDYALPVGKQQQDLLEEDDSAGGVCLHVDKDKVSVEFCSACARKASSSLKM", "length": 354, "header": "tr|F1STU2-1|F1STU2_PIG Isoform 1 of CREB/ATF bZIP transcription factor OS=Sus scrofa OX=9823 GN=CREBZF PE=3 SV=3 CANONICAL=F1STU2-1" }, "isoforms": [ { "isoform_ac": "F1STU2-1", "url": "https://www.uniprot.org/uniprotkb/F1STU2/entry#F1STU2-1", "sequence": { "sequence": "MRHSLTKLLAASGSDSPTRSESPAPAATFSLPPDLSRAAAEDEGTAAAGSPGRKQPRGNEGESEAGRGGRGGVAVRAPSPEEMEEEAVASVPGDETEDMDFLSGLELADLLDPRQPDWHLEPGLSSPGPLSSSGGGSESGGLWRGDDDDEAAAAEMQRFSDLLQRLLNGIGGCSSGSDTGGGEKRRRKSPGGGGGSSGGNDNNQAATKSPRKAAAAAARLNRLKKKEYVMGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAVLANETGLARLLSRLSGVGLRLTTSLFRDSPAGDHDYALPVGKQQQDLLEEDDSAGGVCLHVDKDKVSVEFCSACARKASSSLKM", "length": 354, "header": "tr|F1STU2-1|F1STU2_PIG Isoform 1 of CREB/ATF bZIP transcription factor OS=Sus scrofa OX=9823 GN=CREBZF PE=3 SV=3 CANONICAL=F1STU2-1" }, "locus": { "chromosome": "9", "start_pos": 19594801, "end_pos": 19593740, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016263.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016263.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015829.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015829.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "pmid": "" }, { "name": "response to virus", "id": "GO:0009615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009615", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "pmid": "" }, { "name": "negative regulation of gene expression, epigenetic", "id": "GO:0045814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045814", "evidence": [ { "database": "UniProtKB", "id": "F1STU2", "url": "https://www.uniprot.org/uniprotkb/F1STU2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STU2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STU2" }, { "id": "PF00170", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00170" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BZIP", "eco_id": "ECO_0000259", "start_pos": 217, "end_pos": 264, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 273, "end_pos": 275 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1STU9-1", "uniprot_ac": "F1STU9", "uniprot_id": "F1STU9_PIG", "mass": { "chemical_mass": 172623.0, "monoisotopic_mass": 172623.0 }, "refseq": { "ac": "XP_003129756", "name": "pre-mRNA cleavage complex 2 protein Pcf11 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129756" }, "gene_names": [ { "name": "PCF11", "type": "recommended", "evidence": [ { "id": "F1STU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ] }, { "name": "PCF11", "type": "synonym", "evidence": [ { "id": "XP_003129756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129756" } ] } ], "protein_names": [ { "name": "Pre-mRNA cleavage complex 2 protein Pcf11", "type": "recommended", "evidence": [ { "id": "F1STU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STU9/entry#names_and_taxonomy" } ] }, { "name": "Pre-mRNA cleavage complex II protein Pcf11", "type": "synonym", "evidence": [ { "id": "F1STU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STU9/entry#names_and_taxonomy" } ] }, { "name": "pre-mRNA cleavage complex 2 protein Pcf11 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_003129756", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129756" } ] } ], "function": [ { "annotation": "Component of pre-mRNA cleavage complex II, which promotes transcription termination by RNA polymerase II.", "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9#function" }, { "database": "UniProtKB", "id": "ARBA00057101", "url": "https://www.uniprot.org/uniprotkb/ARBA00057101#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PCF11", "url": "https://www.uniprot.org/uniprotkb/F1STU9", "locus": { "chromosome": "9", "start_pos": 17324710, "end_pos": 17297861, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014901", "url": "https://www.ensembl.org/id/ENSSSCG00000014901" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014901", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014901", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16982", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16982", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515845", "url": "https://www.ncbi.nlm.nih.gov/gene/100515845", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048829", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048829", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048830", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048830", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048832", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048832", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054127", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054127", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515845", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515845", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1STU9", "url": "https://www.orthodb.org/?gene=F1STU9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15921", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15921", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15921:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15921:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11526", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11526", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20827", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20827", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20844", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20844", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20845", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20845", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21936", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21936", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6807505", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72187", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73856", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-77595", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77595", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9770562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003129756", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129756", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1STU9-1", "url": "https://www.uniprot.org/uniprotkb/F1STU9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVVSSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSVQQETSNLGPGSAPSKLHGSQIPPMAVKAPHQVPVQPEKSRPGPSVQIQDLKGTNRDPRLNRMSQHSSHGKDQSHRKEFVMSTLNQSDIKTSKTMPSEKLNSSKQEKSKSGEKITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESSRVSDMSKRDPRLKKHLQDKTDSKDDDTKEKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTVMEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPPSREDRNAKRSAKQDIRDPRRVKKTEEERPQETANQHSTKSGNEPKENVENWQSSKSTKRWKSGWEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVPRDGPAKMIFEGPNKLSPRIDGPPAPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPSGGIRFEGPLLQQGVGMRFEGPHGQSPGMRFEGQHSQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQSGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESFNQTGPYNDPPGNAFNTPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQNSQFGNFGSLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPAAEEEEDQNEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTENDTVESV", "length": 1552, "header": "tr|F1STU9-1|F1STU9_PIG Isoform 1 of Pre-mRNA cleavage complex 2 protein Pcf11 OS=Sus scrofa OX=9823 GN=PCF11 PE=4 SV=4 CANONICAL=F1STU9-1" }, "isoforms": [ { "isoform_ac": "F1STU9-1", "url": "https://www.uniprot.org/uniprotkb/F1STU9/entry#F1STU9-1", "sequence": { "sequence": "MSEQTPAEAGTAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESSTPGTVVSSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSVQQETSNLGPGSAPSKLHGSQIPPMAVKAPHQVPVQPEKSRPGPSVQIQDLKGTNRDPRLNRMSQHSSHGKDQSHRKEFVMSTLNQSDIKTSKTMPSEKLNSSKQEKSKSGEKITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESSRVSDMSKRDPRLKKHLQDKTDSKDDDTKEKRKTAEKKDKDEHMKSSEHRLVGSRNKIINGIVQKQDTVMEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTSTPKAGKIRQSGVKQSHMEEFTPPSREDRNAKRSAKQDIRDPRRVKKTEEERPQETANQHSTKSGNEPKENVENWQSSKSTKRWKSGWEENKSLQQGDEHSKAPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLYDGPSRPSVPRDGPAKMIFEGPNKLSPRIDGPPAPGSLRFDGSPGQMGGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPSGGIRFEGPLLQQGVGMRFEGPHGQSPGMRFEGQHSQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQSGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQPGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESFNQTGPYNDPPGNAFNTPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQNSQFGNFGSLPAPITVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQNPSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATTQVNEVAAQPAAEEEEDQNEDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESIATPTEIKTENDTVESV", "length": 1552, "header": "tr|F1STU9-1|F1STU9_PIG Isoform 1 of Pre-mRNA cleavage complex 2 protein Pcf11 OS=Sus scrofa OX=9823 GN=PCF11 PE=4 SV=4 CANONICAL=F1STU9-1" }, "locus": { "chromosome": "9", "start_pos": 17323815, "end_pos": 17298176, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016256.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016256.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015822.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015822.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515845", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515845", "resource": "KEGG Pathway" }, { "id": "R-SSC-6807505", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6807505", "resource": "Reactome", "description": "RNA polymerase II transcribes snRNA genes" }, { "id": "R-SSC-72187", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72187", "resource": "Reactome", "description": "mRNA 3'-end processing" }, { "id": "R-SSC-73856", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73856", "resource": "Reactome", "description": "RNA Polymerase II Transcription Termination" }, { "id": "R-SSC-77595", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-77595", "resource": "Reactome", "description": "Processing of Intronless Pre-mRNAs" }, { "id": "R-SSC-9770562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770562", "resource": "Reactome", "description": "mRNA Polyadenylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ], "pmid": "" }, { "name": "RNA polymerase II complex binding", "id": "GO:0000993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000993", "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ], "pmid": "" }, { "name": "mRNA cleavage factor complex", "id": "GO:0005849", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005849", "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "termination of RNA polymerase II transcription", "id": "GO:0006369", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006369", "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ], "pmid": "" }, { "name": "mRNA 3'-end processing", "id": "GO:0031124", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031124", "evidence": [ { "database": "UniProtKB", "id": "F1STU9", "url": "https://www.uniprot.org/uniprotkb/F1STU9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1126, "end_pos": 1128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1171, "end_pos": 1173, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1317, "end_pos": 1319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1366, "end_pos": 1368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1481, "end_pos": 1483, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1546, "end_pos": 1548, "annotation": "n_glycosylation_sequon" }, { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 167, "end_pos": 169, "annotation": "n_glycosylation_sequon" }, { "start_pos": 197, "end_pos": 199, "annotation": "n_glycosylation_sequon" }, { "start_pos": 324, "end_pos": 326, "annotation": "n_glycosylation_sequon" }, { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" }, { "start_pos": 605, "end_pos": 607, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1STU9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1STU9" }, { "id": "PS51391", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51391" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CID", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 142, "start_aa": "Ala", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1126, "end_pos": 1128 }, { "start_pos": 1171, "end_pos": 1173 }, { "start_pos": 1317, "end_pos": 1319 }, { "start_pos": 1366, "end_pos": 1368 }, { "start_pos": 1481, "end_pos": 1483 }, { "start_pos": 1546, "end_pos": 1548 }, { "start_pos": 155, "end_pos": 157 }, { "start_pos": 167, "end_pos": 169 }, { "start_pos": 197, "end_pos": 199 }, { "start_pos": 324, "end_pos": 326 }, { "start_pos": 340, "end_pos": 342 }, { "start_pos": 605, "end_pos": 607 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SU35-1", "uniprot_ac": "F1SU35", "uniprot_id": "F1SU35_PIG", "mass": { "chemical_mass": 37733.0, "monoisotopic_mass": 37733.0 }, "refseq": { "ac": "XP_003481177", "name": "probable cytosolic iron-sulfur protein assembly protein CIAO1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481177" }, "gene_names": [ { "name": "CIAO1", "type": "recommended", "evidence": [ { "id": "F1SU35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU35" } ] }, { "name": "CIAO1", "type": "synonym", "evidence": [ { "id": "XP_003481177", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481177" } ] } ], "protein_names": [ { "name": "Probable cytosolic iron-sulfur protein assembly protein CIAO1", "type": "recommended", "evidence": [ { "id": "F1SU35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU35/entry#names_and_taxonomy" } ] }, { "name": "WD repeat-containing protein 39", "type": "synonym", "evidence": [ { "id": "F1SU35", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU35/entry#names_and_taxonomy" } ] }, { "name": "probable cytosolic iron-sulfur protein assembly protein CIAO1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_003481177", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481177" } ] } ], "function": [ { "annotation": "Key component of the cytosolic iron-sulfur protein assembly (CIA) complex, a multiprotein complex that mediates the incorporation of iron-sulfur cluster into extramitochondrial Fe/S proteins. Seems to specifically modulate the transactivation activity of WT1. As part of the mitotic spindle-associated MMXD complex it may play a role in chromosome segregation.", "evidence": [ { "database": "UniProtKB", "id": "F1SU35", "url": "https://www.uniprot.org/uniprotkb/F1SU35#function" }, { "database": "HAMAP", "id": "MF_03037", "url": "https://hamap.expasy.org/signature/MF_03037" }, { "database": "UniProtKB", "id": "ARBA00060126", "url": "https://www.uniprot.org/uniprotkb/ARBA00060126#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SU35", "url": "https://www.uniprot.org/uniprotkb/F1SU35" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CIAO1", "url": "https://www.uniprot.org/uniprotkb/F1SU35", "locus": { "chromosome": "3", "start_pos": 46960881, "end_pos": 46966635, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008130", "url": "https://www.ensembl.org/id/ENSSSCG00000008130" } ] } } ], "crossref": [ { "id": "F1SU35", "url": "https://alphafold.ebi.ac.uk/entry/F1SU35", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008130", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008130", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100738991", "url": "https://www.ncbi.nlm.nih.gov/gene/100738991", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100738991", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738991", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SU35", "url": "https://www.orthodb.org/?gene=F1SU35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19920", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19920", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19920:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19920:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003481177", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481177", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SU35", "url": "https://www.uniprot.org/uniprotkb/F1SU35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU35-1", "url": "https://www.uniprot.org/uniprotkb/F1SU35-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDSLVLLGRIPAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQAHSQDVNCVAWNPKEQGLLASCSDDGELAFWKYQPSEGP", "length": 339, "header": "tr|F1SU35-1|F1SU35_PIG Isoform 1 of Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Sus scrofa OX=9823 GN=CIAO1 PE=3 SV=3 CANONICAL=F1SU35-1" }, "isoforms": [ { "isoform_ac": "F1SU35-1", "url": "https://www.uniprot.org/uniprotkb/F1SU35/entry#F1SU35-1", "sequence": { "sequence": "MKDSLVLLGRIPAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQAHSQDVNCVAWNPKEQGLLASCSDDGELAFWKYQPSEGP", "length": 339, "header": "tr|F1SU35-1|F1SU35_PIG Isoform 1 of Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Sus scrofa OX=9823 GN=CIAO1 PE=3 SV=3 CANONICAL=F1SU35-1" }, "locus": { "chromosome": "3", "start_pos": 46966558, "end_pos": 46963300, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008907.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008907.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008681.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008681.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SU35", "url": "https://www.uniprot.org/uniprotkb/F1SU35" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100738991", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100738991", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "iron-sulfur cluster assembly", "id": "GO:0016226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016226", "evidence": [ { "database": "UniProtKB", "id": "F1SU35", "url": "https://www.uniprot.org/uniprotkb/F1SU35" } ], "pmid": "" }, { "name": "chromosome segregation", "id": "GO:0007059", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007059", "evidence": [ { "database": "UniProtKB", "id": "F1SU35", "url": "https://www.uniprot.org/uniprotkb/F1SU35" } ], "pmid": "" }, { "name": "protein maturation", "id": "GO:0051604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051604", "evidence": [ { "database": "UniProtKB", "id": "F1SU35", "url": "https://www.uniprot.org/uniprotkb/F1SU35" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosolic [4Fe-4S] assembly targeting complex", "id": "GO:0097361", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097361", "evidence": [ { "database": "UniProtKB", "id": "F1SU35", "url": "https://www.uniprot.org/uniprotkb/F1SU35" } ], "pmid": "" }, { "name": "MMXD complex", "id": "GO:0071817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071817", "evidence": [ { "database": "UniProtKB", "id": "F1SU35", "url": "https://www.uniprot.org/uniprotkb/F1SU35" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SU35-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 339, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SU35-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SU35" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 235, "end_pos": 237 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SU77-1", "uniprot_ac": "F1SU77", "uniprot_id": "F1SU77_PIG", "mass": { "chemical_mass": 21671.0, "monoisotopic_mass": 21671.0 }, "refseq": { "ac": "NP_001230267", "name": "group XIIB secretory phospholipase A2-like protein precursor", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230267" }, "gene_names": [ { "name": "PLA2G12B", "type": "recommended", "evidence": [ { "id": "F1SU77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ] }, { "name": "PLA2G12B", "type": "synonym", "evidence": [ { "id": "NP_001230267", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230267" } ] } ], "protein_names": [ { "name": "Group XIIB secretory phospholipase A2-like protein", "type": "recommended", "evidence": [ { "id": "F1SU77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU77/entry#names_and_taxonomy" } ] }, { "name": "Group XIII secretory phospholipase A2-like protein", "type": "synonym", "evidence": [ { "id": "F1SU77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU77/entry#names_and_taxonomy" } ] }, { "name": "group XIIB secretory phospholipase A2-like protein precursor", "type": "synonym", "evidence": [ { "id": "NP_001230267", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230267" } ] }, { "name": "group XIIB secretory phospholipase A2-like protein", "type": "synonym", "evidence": [ { "id": "NP_001230267", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230267" } ] }, { "name": "sPLA2-GXIIB", "type": "synonym", "evidence": [ { "id": "F1SU77", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SU77/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Not known; does not seem to have catalytic activity.", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77#function" }, { "database": "UniProtKB", "id": "ARBA00055969", "url": "https://www.uniprot.org/uniprotkb/ARBA00055969#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PLA2G12B", "url": "https://www.uniprot.org/uniprotkb/F1SU77", "locus": { "chromosome": "14", "start_pos": 75753727, "end_pos": 75778800, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010291", "url": "https://www.ensembl.org/id/ENSSSCG00000010291" } ] } } ], "crossref": [ { "id": "F1SU77", "url": "https://alphafold.ebi.ac.uk/entry/F1SU77", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010291", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010291", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100152597", "url": "https://www.ncbi.nlm.nih.gov/gene/100152597", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010711", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010711", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100152597", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152597", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ICQYRCR", "url": "https://omabrowser.org/oma/group/ICQYRCR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SU77", "url": "https://www.orthodb.org/?gene=F1SU77", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12824", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12824", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12824:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12824:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06951", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06951", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001230267", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230267", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SU77-1", "url": "https://www.uniprot.org/uniprotkb/F1SU77-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLPTSFLILWLSLEGVLVQSGSSPDAEESYSDWGLRHIRGSFESVNSYFDSFLELLGGKNGVCQYRCRYGKAPMPRPGYKPQEPNGCSSYFLGLKVPQSMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAKFRWCLHSICSDLKKSLGFVSNVEACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKEEL", "length": 194, "header": "tr|F1SU77-1|F1SU77_PIG Isoform 1 of Group XIIB secretory phospholipase A2-like protein OS=Sus scrofa OX=9823 GN=PLA2G12B PE=3 SV=2 CANONICAL=F1SU77-1" }, "isoforms": [ { "isoform_ac": "F1SU77-1", "url": "https://www.uniprot.org/uniprotkb/F1SU77/entry#F1SU77-1", "sequence": { "sequence": "MKLPTSFLILWLSLEGVLVQSGSSPDAEESYSDWGLRHIRGSFESVNSYFDSFLELLGGKNGVCQYRCRYGKAPMPRPGYKPQEPNGCSSYFLGLKVPQSMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAKFRWCLHSICSDLKKSLGFVSNVEACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKEEL", "length": 194, "header": "tr|F1SU77-1|F1SU77_PIG Isoform 1 of Group XIIB secretory phospholipase A2-like protein OS=Sus scrofa OX=9823 GN=PLA2G12B PE=3 SV=2 CANONICAL=F1SU77-1" }, "locus": { "chromosome": "14", "start_pos": 75778771, "end_pos": 75754961, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011263.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011263.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010971.2", "url": "https://www.ensembl.org/id/ENSSSCP00000010971.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100152597", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100152597", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BFK0-1", "protein_name": "Group XIIB secretory phospholipase A2-like protein", "gene_name": "PLA2G12B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTWAISFLILWLSLAGGLAQSDTSPDEEESYSDWGLRHIRGSFESVNSYFDSFMELLGGKNGVCQYRCRYGKAPMPRPGYKPQEPNGCSSYFLGLKVPERMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAKFRWCLHSICSDLKRSLGFVSNVEVACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKDEL", "length": 195 }, "evidence": [ { "id": "F1SU77", "url": "https://omabrowser.org/oma/group/F1SU77/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3HJ25-1", "protein_name": "Group XIIB secretory phospholipase A2-like protein", "gene_name": "Pla2g12b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKLLCCFFLLWLGLAGSLAQSDPSLKGEESYSDWGLRHLRGSFESVNSYVDSFMELLGGKNGVCQYRCRYGKAPMPRPGYKPQEPNGCGSYFLGIKVPGSMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAKFRWCLHSICSDLKRSLGFVSNVEAACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKEEL", "length": 195 }, "evidence": [ { "id": "F1SU77", "url": "https://omabrowser.org/oma/group/F1SU77/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "M0RCI5-1", "protein_name": "Group XIIB secretory phospholipase A2-like protein", "gene_name": "Pla2g12b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLLCAFFLLWLGLVGSLAQSDPSPKGEESYSDWGLRQLRGSFESVNSYVDSFMELLGGKNGVCQYRCRYGKAPMPRPGYKPQEPNGCGSYFLGIKVPGSMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAKFRWCLHSICSDLKRSLGFVSNVEACDSLADTVFNTVWTLGCRPFMNSQRAACICAEEEKEEL", "length": 194 }, "evidence": [ { "id": "F1SU77", "url": "https://omabrowser.org/oma/group/F1SU77/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9BX93-1", "protein_name": "Group XIIB secretory phospholipase A2-like protein", "gene_name": "PLA2G12B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLASGFLVLWLSLGGGLAQSDTSPDTEESYSDWGLRHLRGSFESVNSYFDSFLELLGGKNGVCQYRCRYGKAPMPRPGYKPQEPNGCGSYFLGLKVPESMDLGIPAMTKCCNQLDVCYDTCGANKYRCDAKFRWCLHSICSDLKRSLGFVSKVEAACDSLVDTVFNTVWTLGCRPFMNSQRAACICAEEEKEEL", "length": 195 }, "evidence": [ { "id": "F1SU77", "url": "https://omabrowser.org/oma/group/F1SU77/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VUV6-1", "protein_name": "GXIVsPLA2, isoform A", "gene_name": "GXIVsPLA2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MQFSWMKVAIYLLTFLTYAYSGYGSSTIVHLRDAIIAAEAIFGDVFKNLIVLVRKFRTVHEVFDAAVDENCIYQCPAPDIGGPAPRAVQNKFYTPTADGCGSLGLRISTDYLPAKEMETCCNDHDICYDTCNSDKELCDLDFKRCLYKYCDSYEKSIASDLMMKGCKAAAKMLFTGTLTLGCRSYLDSQQRSCYCAPPKSSSYNGNRQGNSNSREKQQRQKYGWKDRNEI", "length": 230 }, "evidence": [ { "id": "F1SU77", "url": "https://omabrowser.org/oma/group/F1SU77/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "pmid": "" }, { "name": "arachidonate secretion", "id": "GO:0050482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050482", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "pmid": "" }, { "name": "cholesterol homeostasis", "id": "GO:0042632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042632", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "pmid": "" }, { "name": "triglyceride homeostasis", "id": "GO:0070328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070328", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "pmid": "" }, { "name": "phospholipid metabolic process", "id": "GO:0006644", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006644", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "pmid": "" }, { "name": "phospholipase A2 activity", "id": "GO:0004623", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004623", "evidence": [ { "database": "UniProtKB", "id": "F1SU77", "url": "https://www.uniprot.org/uniprotkb/F1SU77" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SU77-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 194, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SU77-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SU77" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUA7-1", "uniprot_ac": "F1SUA7", "uniprot_id": "F1SUA7_PIG", "mass": { "chemical_mass": 115712.0, "monoisotopic_mass": 115712.0 }, "refseq": {}, "gene_names": [ { "name": "CDH23", "type": "recommended", "evidence": [ { "id": "F1SUA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUA7" } ] } ], "protein_names": [ { "name": "Cadherin related 23", "type": "synonym", "evidence": [ { "id": "F1SUA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUA7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUA7", "url": "https://www.uniprot.org/uniprotkb/F1SUA7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDH23", "url": "https://www.uniprot.org/uniprotkb/F1SUA7", "locus": {} } ], "crossref": [ { "id": "F1SUA7", "url": "https://alphafold.ebi.ac.uk/entry/F1SUA7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010278", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010278", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24027:SF438", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24027:SF438", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SUA7", "url": "https://www.uniprot.org/uniprotkb/F1SUA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUA7-1", "url": "https://www.uniprot.org/uniprotkb/F1SUA7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRCHVASSCCAVWLFVLISGCWGQVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSQFFAIDSARGIVTVTRELDYETTQAYQLTVNATDQDKTRPLSTLANLAIIITDVQDMDPIFINLPYSTNIYEHSPPGTTVRVITAIDQDKGRPRGIGYTIVSGNTNSIFALDYISGALTLNGLLDRENPLYSHGFILTVKGTELNDDRTPSDATVTTTFNILVIDINDNAPEFNSSEYSVAITELAQVGFALPLFIQVMDKDENLGLNSMFEVYLVGNNSHHFIISPTSVQGKADIRIRVAIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNVSLYENVTVGTSVLTVLATDSDVGTFGEVNYFFSDDPDRFSLDKDTGLIMLIARLDYELIQRFTLTVIARDGGGEETTGRVRINVLDVNDNVPTFQKDAYVGALRENEPSVTQLVRLRATDEDSPPNNQITYSIVSASAFGSYFDISVYEGYGVISVSRPLDYEQIPNGLIYLTVMAKDAGHPPLNSTVPITIEVFDENDNPPTFSKPAYFVSVVENIMAGATVLFLNATDLDRSREYGQESIIYSLEGSSQFRINARSGEITTTSLLDRETKSEYILIVRAVDGGVGHNQKTGIATVNITLLDINDNHPTWKDAPYYINLVEMTPPDSDVTTVVALDPDLGENGTLVYSIQPPNKFYSLNSSTGKIRTTHVMLDRENPDPDEAELMRKIVVSVTDCGTPPLRATSSATVFVNLLDLNDNDPTFQNLPFVAEVVEGTPAGVSIFQVVAIDLDEGLNGLVTYRMQVGMPRLDFLINSSSGVVLTTAELDRERIAEYQLRVVASDAGTPTKSSTSTLTIRVLDVNDETPTFFPAVYNVSVSEDVPREFRVVWLNCTDHDVGLNAELSYFITGAALPPPLPDEQPAW", "length": 1050, "header": "tr|F1SUA7-1|F1SUA7_PIG Isoform 1 of Cadherin related 23 OS=Sus scrofa OX=9823 GN=CDH23 PE=4 SV=5 CANONICAL=F1SUA7-1" }, "isoforms": [ { "isoform_ac": "F1SUA7-1", "url": "https://www.uniprot.org/uniprotkb/F1SUA7/entry#F1SUA7-1", "sequence": { "sequence": "MRCHVASSCCAVWLFVLISGCWGQVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSQFFAIDSARGIVTVTRELDYETTQAYQLTVNATDQDKTRPLSTLANLAIIITDVQDMDPIFINLPYSTNIYEHSPPGTTVRVITAIDQDKGRPRGIGYTIVSGNTNSIFALDYISGALTLNGLLDRENPLYSHGFILTVKGTELNDDRTPSDATVTTTFNILVIDINDNAPEFNSSEYSVAITELAQVGFALPLFIQVMDKDENLGLNSMFEVYLVGNNSHHFIISPTSVQGKADIRIRVAIPLDYETVDRYDFDLFANESVPDHVGYAKVKITLINENDNRPIFSQPLYNVSLYENVTVGTSVLTVLATDSDVGTFGEVNYFFSDDPDRFSLDKDTGLIMLIARLDYELIQRFTLTVIARDGGGEETTGRVRINVLDVNDNVPTFQKDAYVGALRENEPSVTQLVRLRATDEDSPPNNQITYSIVSASAFGSYFDISVYEGYGVISVSRPLDYEQIPNGLIYLTVMAKDAGHPPLNSTVPITIEVFDENDNPPTFSKPAYFVSVVENIMAGATVLFLNATDLDRSREYGQESIIYSLEGSSQFRINARSGEITTTSLLDRETKSEYILIVRAVDGGVGHNQKTGIATVNITLLDINDNHPTWKDAPYYINLVEMTPPDSDVTTVVALDPDLGENGTLVYSIQPPNKFYSLNSSTGKIRTTHVMLDRENPDPDEAELMRKIVVSVTDCGTPPLRATSSATVFVNLLDLNDNDPTFQNLPFVAEVVEGTPAGVSIFQVVAIDLDEGLNGLVTYRMQVGMPRLDFLINSSSGVVLTTAELDRERIAEYQLRVVASDAGTPTKSSTSTLTIRVLDVNDETPTFFPAVYNVSVSEDVPREFRVVWLNCTDHDVGLNAELSYFITGAALPPPLPDEQPAW", "length": 1050, "header": "tr|F1SUA7-1|F1SUA7_PIG Isoform 1 of Cadherin related 23 OS=Sus scrofa OX=9823 GN=CDH23 PE=4 SV=5 CANONICAL=F1SUA7-1" }, "locus": { "chromosome": "14", "start_pos": 74625370, "end_pos": 74335213, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011250.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011250.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010958.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010958.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUA7", "url": "https://www.uniprot.org/uniprotkb/F1SUA7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUA7", "url": "https://www.uniprot.org/uniprotkb/F1SUA7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F1SUA7", "url": "https://www.uniprot.org/uniprotkb/F1SUA7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "F1SUA7", "url": "https://www.uniprot.org/uniprotkb/F1SUA7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1001, "end_pos": 1003, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1018, "end_pos": 1020, "annotation": "n_glycosylation_sequon" }, { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 206, "end_pos": 208, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 393, "end_pos": 395, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 466, "end_pos": 468, "annotation": "n_glycosylation_sequon" }, { "start_pos": 472, "end_pos": 474, "annotation": "n_glycosylation_sequon" }, { "start_pos": 652, "end_pos": 654, "annotation": "n_glycosylation_sequon" }, { "start_pos": 694, "end_pos": 696, "annotation": "n_glycosylation_sequon" }, { "start_pos": 765, "end_pos": 767, "annotation": "n_glycosylation_sequon" }, { "start_pos": 810, "end_pos": 812, "annotation": "n_glycosylation_sequon" }, { "start_pos": 827, "end_pos": 829, "annotation": "n_glycosylation_sequon" }, { "start_pos": 941, "end_pos": 943, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUA7" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 42, "end_pos": 132, "start_aa": "Ile", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1001, "end_pos": 1003 }, { "start_pos": 1018, "end_pos": 1020 }, { "start_pos": 155, "end_pos": 157 }, { "start_pos": 206, "end_pos": 208 }, { "start_pos": 349, "end_pos": 351 }, { "start_pos": 393, "end_pos": 395 }, { "start_pos": 434, "end_pos": 436 }, { "start_pos": 466, "end_pos": 468 }, { "start_pos": 472, "end_pos": 474 }, { "start_pos": 652, "end_pos": 654 }, { "start_pos": 694, "end_pos": 696 }, { "start_pos": 765, "end_pos": 767 }, { "start_pos": 810, "end_pos": 812 }, { "start_pos": 827, "end_pos": 829 }, { "start_pos": 941, "end_pos": 943 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUC6-1", "uniprot_ac": "F1SUC6", "uniprot_id": "F1SUC6_PIG", "mass": { "chemical_mass": 27201.0, "monoisotopic_mass": 27201.0 }, "refseq": { "ac": "XP_020942655", "name": "homeobox protein BarH-like 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942655" }, "gene_names": [ { "name": "BARX1", "type": "recommended", "evidence": [ { "id": "F1SUC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUC6" } ] }, { "name": "BARX1", "type": "synonym", "evidence": [ { "id": "XP_020942655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942655" } ] } ], "protein_names": [ { "name": "BARX homeobox 1", "type": "synonym", "evidence": [ { "id": "F1SUC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUC6/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein BarH-like 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020942655", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942655" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUC6", "url": "https://www.uniprot.org/uniprotkb/F1SUC6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BARX1", "url": "https://www.uniprot.org/uniprotkb/F1SUC6", "locus": { "chromosome": "3", "start_pos": 43284464, "end_pos": 43288281, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008081", "url": "https://www.ensembl.org/id/ENSSSCG00000008081" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008081", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008081", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100512774", "url": "https://www.ncbi.nlm.nih.gov/gene/100512774", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050848", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050848", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CADHRSH", "url": "https://omabrowser.org/oma/group/CADHRSH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24333", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24333", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24333:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24333:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020942655", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020942655", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SUC6", "url": "https://www.uniprot.org/uniprotkb/F1SUC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUC6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUC6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGLPGAAGAPHLPLELQLRGKLESSGAGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKEAEKPAEALGEAGDRSHED", "length": 254, "header": "tr|F1SUC6-1|F1SUC6_PIG Isoform 1 of BARX homeobox 1 OS=Sus scrofa OX=9823 GN=BARX1 PE=3 SV=3 CANONICAL=F1SUC6-1" }, "isoforms": [ { "isoform_ac": "F1SUC6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUC6/entry#F1SUC6-1", "sequence": { "sequence": "MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGLPGAAGAPHLPLELQLRGKLESSGAGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKEAEKPAEALGEAGDRSHED", "length": 254, "header": "tr|F1SUC6-1|F1SUC6_PIG Isoform 1 of BARX homeobox 1 OS=Sus scrofa OX=9823 GN=BARX1 PE=3 SV=3 CANONICAL=F1SUC6-1" }, "locus": { "chromosome": "3", "start_pos": 43288103, "end_pos": 43285120, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008854.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008854.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008630.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008630.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUC6", "url": "https://www.uniprot.org/uniprotkb/F1SUC6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1A521-1", "protein_name": "BARX homeobox 1", "gene_name": "BARX1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQHPLELGAAHYFPAEAFPDHRSHRYRSFMIEEILTDPPDAKGAAPPGELLKFGVQALLSARPYHSHLAVLKAEPAAVFKFPLAPLGCSGLGSALLAAGSGLQGGSASPHLPLELHLRGKLEPGGPETGSKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPSSEQLSEQERARDAEKPPESLGSPAEVSQEE", "length": 247 }, "evidence": [ { "id": "F1SUC6", "url": "https://omabrowser.org/oma/group/F1SUC6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZA67-1", "protein_name": "BARX homeobox 1", "gene_name": "Barx1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRPGEPGSARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGMPGTAGTSHLPLELQLRGKLEAAGSGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKEAEKPAETPGEPSDRSCED", "length": 254 }, "evidence": [ { "id": "F1SUC6", "url": "https://omabrowser.org/oma/group/F1SUC6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B7H9-1", "protein_name": "BARX homeobox 1", "gene_name": "BARX1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGLPGAAGAPHLPLELQLRGKLEAPGAGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKEAEKTVEAPGEASDRSHED", "length": 254 }, "evidence": [ { "id": "F1SUC6", "url": "https://omabrowser.org/oma/group/F1SUC6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9ER42-1", "protein_name": "Homeobox protein BarH-like 1", "gene_name": "Barx1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLGSALLAAGPGMPGPAGASHLPLELQLRGKLEAAGSGEPGAKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKETEKPAETPGEPSDRNCED", "length": 254 }, "evidence": [ { "id": "F1SUC6", "url": "https://omabrowser.org/oma/group/F1SUC6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9HBU1-1", "protein_name": "Homeobox protein BarH-like 1", "gene_name": "BARX1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQRPGEPGAARFGPPEGCADHRPHRYRSFMIEEILTEPPGPKGAAPAAAAAAAGELLKFGVQALLAARPFHSHLAVLKAEQAAVFKFPLAPLGCSGLSSALLAAGPGLPGAAGAPHLPLELQLRGKLEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQERAKDAEKPAEVPGEPSDRSRED", "length": 254 }, "evidence": [ { "id": "F1SUC6", "url": "https://omabrowser.org/oma/group/F1SUC6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SUC6", "url": "https://www.uniprot.org/uniprotkb/F1SUC6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F1SUC6", "url": "https://www.uniprot.org/uniprotkb/F1SUC6" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SUC6", "url": "https://www.uniprot.org/uniprotkb/F1SUC6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F1SUC6", "url": "https://www.uniprot.org/uniprotkb/F1SUC6" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F1SUC6", "url": "https://www.uniprot.org/uniprotkb/F1SUC6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUC6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUC6" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 140, "end_pos": 200, "start_aa": "Lys", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUD0-1", "uniprot_ac": "F1SUD0", "uniprot_id": "F1SUD0_PIG", "mass": { "chemical_mass": 48073.0, "monoisotopic_mass": 48073.0 }, "refseq": {}, "gene_names": [ { "name": "NPFFR1", "type": "recommended", "evidence": [ { "id": "F1SUD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" } ] } ], "protein_names": [ { "name": "Neuropeptide FF receptor 1", "type": "recommended", "evidence": [ { "id": "F1SUD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD0/entry#names_and_taxonomy" } ] }, { "name": "G-protein coupled receptor 147", "type": "synonym", "evidence": [ { "id": "F1SUD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD0/entry#names_and_taxonomy" } ] }, { "name": "RFamide-related peptide receptor OT7T022", "type": "synonym", "evidence": [ { "id": "F1SUD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Receptor for NPAF (A-18-F-amide) and NPFF (F-8-F-amide) neuropeptides, also known as morphine-modulating peptides. Can also be activated by a variety of naturally occurring or synthetic FMRF-amide like ligands. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.", "evidence": [ { "database": "UniProtKB", "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0#function" }, { "database": "UniProtKB", "id": "ARBA00025478", "url": "https://www.uniprot.org/uniprotkb/ARBA00025478#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NPFFR1", "url": "https://www.uniprot.org/uniprotkb/F1SUD0", "locus": { "chromosome": "14", "start_pos": 73182892, "end_pos": 73205829, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010266", "url": "https://www.ensembl.org/id/ENSSSCG00000010266" } ] } } ], "crossref": [ { "id": "F1SUD0", "url": "https://alphafold.ebi.ac.uk/entry/F1SUD0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010266", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010266", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005395", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005395", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005396", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005396", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24241", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24241", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24241:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24241:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-389397", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389397", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUD0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGESFQLSNSSQAPSQNGSNAETTPATSLTFSSYYQHSSPVAAMFIVAYVLIFLLCMVGNTLVCFVVLKNRRMRTVTNMFILNLAVSDLLVGIFCMPTTLVDNLITGWPFDNATCKMSGLVQGMSVSASVFTLVAIAVERFRYIVHPFREKLTLRKALVTIAVIWALALLIMCPSAVTLTVTREEHHFMVDARNRSYPLYSCWEAWPEKGMRKVYTTVLFSHIYLAPLALIVVMYARIARKLCKAQGPARAGEEAAAEGGRGARRRARVVHMLVMVALFFTLSWLPLWVLLLLIDYGQLSEPQLHLVTVYAFPFAHWLAFFNSSANPIIYGYFNENFRRGFQAAFRAQLCPRPWGRHPEAYSQQPSGLLRTRIFVEVQPSDSGLPSQSGLSSGASRPGRLPLRHGRVAHHGLAAEGPGCSHLPLTIPAWDI", "length": 432, "header": "tr|F1SUD0-1|F1SUD0_PIG Isoform 1 of Neuropeptide FF receptor 1 OS=Sus scrofa OX=9823 GN=NPFFR1 PE=3 SV=3 CANONICAL=F1SUD0-1" }, "isoforms": [ { "isoform_ac": "F1SUD0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUD0/entry#F1SUD0-1", "sequence": { "sequence": "MEGESFQLSNSSQAPSQNGSNAETTPATSLTFSSYYQHSSPVAAMFIVAYVLIFLLCMVGNTLVCFVVLKNRRMRTVTNMFILNLAVSDLLVGIFCMPTTLVDNLITGWPFDNATCKMSGLVQGMSVSASVFTLVAIAVERFRYIVHPFREKLTLRKALVTIAVIWALALLIMCPSAVTLTVTREEHHFMVDARNRSYPLYSCWEAWPEKGMRKVYTTVLFSHIYLAPLALIVVMYARIARKLCKAQGPARAGEEAAAEGGRGARRRARVVHMLVMVALFFTLSWLPLWVLLLLIDYGQLSEPQLHLVTVYAFPFAHWLAFFNSSANPIIYGYFNENFRRGFQAAFRAQLCPRPWGRHPEAYSQQPSGLLRTRIFVEVQPSDSGLPSQSGLSSGASRPGRLPLRHGRVAHHGLAAEGPGCSHLPLTIPAWDI", "length": 432, "header": "tr|F1SUD0-1|F1SUD0_PIG Isoform 1 of Neuropeptide FF receptor 1 OS=Sus scrofa OX=9823 GN=NPFFR1 PE=3 SV=3 CANONICAL=F1SUD0-1" }, "locus": { "chromosome": "14", "start_pos": 73205492, "end_pos": 73183588, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011236.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011236.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010944.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010944.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-389397", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-389397", "resource": "Reactome", "description": "Orexin and neuropeptides FF and QRFP bind to their respective receptors" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" } ], "pmid": "" }, { "name": "neuropeptide receptor activity", "id": "GO:0008188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008188", "evidence": [ { "database": "UniProtKB", "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" } ], "pmid": "" }, { "name": "9+0 non-motile cilium", "id": "GO:0097731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097731", "evidence": [ { "database": "UniProtKB", "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "neuropeptide signaling pathway", "id": "GO:0007218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007218", "evidence": [ { "database": "UniProtKB", "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" } ], "pmid": "" }, { "name": "cellular response to hormone stimulus", "id": "GO:0032870", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032870", "evidence": [ { "database": "UniProtKB", "id": "F1SUD0", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 10, "end_pos": 12, "annotation": "n_glycosylation_sequon" }, { "start_pos": 113, "end_pos": 115, "annotation": "n_glycosylation_sequon" }, { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" }, { "start_pos": 195, "end_pos": 197, "annotation": "n_glycosylation_sequon" }, { "start_pos": 323, "end_pos": 325, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUD0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 432, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUD0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUD0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD0" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 331, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 10, "end_pos": 12 }, { "start_pos": 113, "end_pos": 115 }, { "start_pos": 18, "end_pos": 20 }, { "start_pos": 195, "end_pos": 197 }, { "start_pos": 323, "end_pos": 325 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUD5-1", "uniprot_ac": "F1SUD5", "uniprot_id": "F1SUD5_PIG", "mass": { "chemical_mass": 121698.0, "monoisotopic_mass": 121698.0 }, "refseq": { "ac": "XP_020943838", "name": "lysine-specific demethylase PHF2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943838" }, "gene_names": [ { "name": "PHF2", "type": "recommended", "evidence": [ { "id": "F1SUD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ] }, { "name": "PHF2", "type": "synonym", "evidence": [ { "id": "XP_020943838", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943838" } ] } ], "protein_names": [ { "name": "Lysine-specific demethylase PHF2", "type": "recommended", "evidence": [ { "id": "F1SUD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD5/entry#names_and_taxonomy" } ] }, { "name": "GRC5", "type": "synonym", "evidence": [ { "id": "F1SUD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD5/entry#names_and_taxonomy" } ] }, { "name": "Lysine-specific demethylase phf2", "type": "synonym", "evidence": [ { "id": "F1SUD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD5/entry#names_and_taxonomy" } ] }, { "name": "PHD finger protein 2", "type": "synonym", "evidence": [ { "id": "F1SUD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD5/entry#names_and_taxonomy" } ] }, { "name": "lysine-specific demethylase PHF2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020943838", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943838" } ] } ], "function": [ { "annotation": "Lysine demethylase that demethylates both histones and non-histone proteins. Enzymatically inactive by itself, and becomes active following phosphorylation by PKA: forms a complex with ARID5B and mediates demethylation of methylated ARID5B. Demethylation of ARID5B leads to target the PHF2-ARID5B complex to target promoters, where PHF2 mediates demethylation of dimethylated 'Lys-9' of histone H3 (H3K9me2), followed by transcription activation of target genes. The PHF2-ARID5B complex acts as a coactivator of HNF4A in liver. PHF2 is recruited to trimethylated 'Lys-4' of histone H3 (H3K4me3) at rDNA promoters and promotes expression of rDNA. Involved in the activation of toll-like receptor 4 (TLR4)-target inflammatory genes in macrophages by catalyzing the demethylation of trimethylated histone H4 lysine 20 (H4K20me3) at the gene promoters.", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5#function" }, { "database": "UniProtKB", "id": "ARBA00053992", "url": "https://www.uniprot.org/uniprotkb/ARBA00053992#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PHF2", "url": "https://www.uniprot.org/uniprotkb/F1SUD5", "locus": { "chromosome": "3", "start_pos": 43078808, "end_pos": 42988636, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008080", "url": "https://www.ensembl.org/id/ENSSSCG00000008080" } ] } } ], "crossref": [ { "id": "F1SUD5", "url": "https://alphafold.ebi.ac.uk/entry/F1SUD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008080", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008080", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15554", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15554", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514572", "url": "https://www.ncbi.nlm.nih.gov/gene/100514572", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050690", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050690", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514572", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514572", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUD5", "url": "https://www.orthodb.org/?gene=F1SUD5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23123", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23123", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17811", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17811", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-3214842", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214842", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943838", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943838", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "60192", "url": "https://www.rhea-db.org/rhea/60192", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUD5-1", "url": "https://www.uniprot.org/uniprotkb/F1SUD5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRTWHKHSPGQTPDVKPVQNGSQLFIKELRSRTFPSAEDVVARVPGSQLTLGYMEEHGFTEPILVPKKDGLGLAVPAPTFYVSDVENYVGPERSVDVTDVTKQKDCKMKLKEFVDYYYSTNRKRVLNLTNLEFSDTRMSSFVEPPDIVKKLSWVENYWPDDALLAKPKVTKYCLICVKDSYTDFHIDSGGASAWYHVLKGEKIFYLIKPASANISLYERWQSASNHSEMFFADQVDKCYKCTLKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLKLGSLTQFPNFETACWYMGKHLLEAFKGSHKSGKQLPPHLVQGAKILNGAFRSWTKKQALAEHEDELPEHFKPSQLIKDLAKEIRLSENASKASRPEVTAAVSSDEVCFGDREKEEPPSPIEASPPRSFLEKVSKKKTPKTVKMPKPSKVPKPPKPPKPPKSLKLKDGGKKKGKKCRGPASPTIPNLDLLEAHTKEALTKIEPPKKGKATKNVLSVPNKEVISTQNDVERLEIREQTKSKSEAKWKYKNSKPDSLLKMEEEQKLEKSPLAGNKDTKFSFSFSNKKLLGSKTLKPQPSPGVFGALQNFKEDKPQPVRDEYEYVSDDGELKIDEFPIRRKKNAPKRDLSFLLDKKEPLPTPTSKPKLDSALYKQSDDSSDEGSLHIDTDTKPARNAKVKKDGGGSAAGILDLLQASEEVGALEYNPNSQPPASPSTQEAIQGMLSMANLQASDSCLQTAWGAGQAKGSSLAAHGPRKNGAGGKSAGKRLLKRTAKNSVDLDDYEEEQDHLDACFKDSDYVYPSLESDEDSPVFKSRSKKRKGSDDAPYSPTARVGPSVPRQDRPVREGTRVASIETGLAAAAAKLSQQEEQKNRKKKNTKRKLAPNTTSPSASVTTLAGTTSASTTSASTTSASTTSASTTSASTTPASTTPASTSTASSQASQEGSSPEPLPESHSSSLVDHEYTAAGAFAGAQAGRSSQPMAPGVFLTQRRPSSSSPNNTAAKGKRTKKGMATAKQRLGKILKIHRNGKLLL", "length": 1107, "header": "tr|F1SUD5-1|F1SUD5_PIG Isoform 1 of Lysine-specific demethylase PHF2 OS=Sus scrofa OX=9823 GN=PHF2 PE=3 SV=4 CANONICAL=F1SUD5-1" }, "isoforms": [ { "isoform_ac": "F1SUD5-1", "url": "https://www.uniprot.org/uniprotkb/F1SUD5/entry#F1SUD5-1", "sequence": { "sequence": "MATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKSTLKKKRTWHKHSPGQTPDVKPVQNGSQLFIKELRSRTFPSAEDVVARVPGSQLTLGYMEEHGFTEPILVPKKDGLGLAVPAPTFYVSDVENYVGPERSVDVTDVTKQKDCKMKLKEFVDYYYSTNRKRVLNLTNLEFSDTRMSSFVEPPDIVKKLSWVENYWPDDALLAKPKVTKYCLICVKDSYTDFHIDSGGASAWYHVLKGEKIFYLIKPASANISLYERWQSASNHSEMFFADQVDKCYKCTLKQGQTLFIPSGWIYATLTPVDCLAFAGHFLHSLSVEMQMRAYEVERRLKLGSLTQFPNFETACWYMGKHLLEAFKGSHKSGKQLPPHLVQGAKILNGAFRSWTKKQALAEHEDELPEHFKPSQLIKDLAKEIRLSENASKASRPEVTAAVSSDEVCFGDREKEEPPSPIEASPPRSFLEKVSKKKTPKTVKMPKPSKVPKPPKPPKPPKSLKLKDGGKKKGKKCRGPASPTIPNLDLLEAHTKEALTKIEPPKKGKATKNVLSVPNKEVISTQNDVERLEIREQTKSKSEAKWKYKNSKPDSLLKMEEEQKLEKSPLAGNKDTKFSFSFSNKKLLGSKTLKPQPSPGVFGALQNFKEDKPQPVRDEYEYVSDDGELKIDEFPIRRKKNAPKRDLSFLLDKKEPLPTPTSKPKLDSALYKQSDDSSDEGSLHIDTDTKPARNAKVKKDGGGSAAGILDLLQASEEVGALEYNPNSQPPASPSTQEAIQGMLSMANLQASDSCLQTAWGAGQAKGSSLAAHGPRKNGAGGKSAGKRLLKRTAKNSVDLDDYEEEQDHLDACFKDSDYVYPSLESDEDSPVFKSRSKKRKGSDDAPYSPTARVGPSVPRQDRPVREGTRVASIETGLAAAAAKLSQQEEQKNRKKKNTKRKLAPNTTSPSASVTTLAGTTSASTTSASTTSASTTSASTTSASTTPASTTPASTSTASSQASQEGSSPEPLPESHSSSLVDHEYTAAGAFAGAQAGRSSQPMAPGVFLTQRRPSSSSPNNTAAKGKRTKKGMATAKQRLGKILKIHRNGKLLL", "length": 1107, "header": "tr|F1SUD5-1|F1SUD5_PIG Isoform 1 of Lysine-specific demethylase PHF2 OS=Sus scrofa OX=9823 GN=PHF2 PE=3 SV=4 CANONICAL=F1SUD5-1" }, "locus": { "chromosome": "3", "start_pos": 43076912, "end_pos": 42988679, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008853.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008853.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008629.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008629.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 713, "start_aa": "Thr", "end_pos": 713, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr713", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514572", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514572", "resource": "KEGG Pathway" }, { "id": "R-SSC-3214842", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214842", "resource": "Reactome", "description": "HDMs demethylate histones" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 8, "go_terms": [ { "name": "histone H4K20 demethylase activity", "id": "GO:0035575", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035575", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "histone demethylase activity", "id": "GO:0032452", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032452", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "histone H3K9 demethylase activity", "id": "GO:0032454", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032454", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "histone H3K4me3 reader activity", "id": "GO:0140002", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140002", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "transcription initiation-coupled chromatin remodeling", "id": "GO:0045815", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045815", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" }, { "name": "negative regulation of rDNA heterochromatin formation", "id": "GO:0061188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061188", "evidence": [ { "database": "UniProtKB", "id": "F1SUD5", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1073, "end_pos": 1075, "annotation": "n_glycosylation_sequon" }, { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 444, "end_pos": 446, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" }, { "start_pos": 959, "end_pos": 961, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "60192", "name": "", "equation": "N(6),N(6)-dimethyl-L-lysyl(9)-[histone H3] + 2-oxoglutarate + O2 = N(6)-methyl-L-lysyl(9)-[histone H3] + formaldehyde + succinate + CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "60192", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60192" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUD5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1107, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUD5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUD5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" }, { "id": "PS51184", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "JmjC", "eco_id": "ECO_0000259", "start_pos": 197, "end_pos": 353, "start_aa": "Phe", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD5" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 56, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 713 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1073, "end_pos": 1075 }, { "start_pos": 191, "end_pos": 193 }, { "start_pos": 277, "end_pos": 279 }, { "start_pos": 289, "end_pos": 291 }, { "start_pos": 444, "end_pos": 446 }, { "start_pos": 84, "end_pos": 86 }, { "start_pos": 959, "end_pos": 961 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUD9-1", "uniprot_ac": "F1SUD9", "uniprot_id": "F1SUD9_PIG", "mass": { "chemical_mass": 56012.0, "monoisotopic_mass": 56012.0 }, "refseq": { "ac": "XP_013851236", "name": "inositol-pentakisphosphate 2-kinase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851236" }, "gene_names": [ { "name": "IPPK", "type": "recommended", "evidence": [ { "id": "F1SUD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ] }, { "name": "IPPK", "type": "synonym", "evidence": [ { "id": "XP_013851236", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851236" } ] } ], "protein_names": [ { "name": "Inositol-pentakisphosphate 2-kinase", "type": "recommended", "evidence": [ { "id": "F1SUD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD9/entry#names_and_taxonomy" } ] }, { "name": "2.7.1.158", "type": "synonym", "evidence": [ { "id": "F1SUD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUD9/entry#names_and_taxonomy" } ] }, { "name": "inositol-pentakisphosphate 2-kinase", "type": "synonym", "evidence": [ { "id": "XP_013851236", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851236" } ] } ], "function": [ { "annotation": "Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate). InsP6 is involved in many processes such as mRNA export, non-homologous end-joining, endocytosis, ion channel regulation. It also protects cells from TNF-induced apoptosis.", "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9#function" }, { "database": "UniProtKB", "id": "ARBA00094384", "url": "https://www.uniprot.org/uniprotkb/ARBA00094384#function" }, { "database": "UniProtKB", "id": "I3LHR4", "url": "https://www.uniprot.org/uniprotkb/I3LHR4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IPPK", "url": "https://www.uniprot.org/uniprotkb/F1SUD9", "locus": { "chromosome": "3", "start_pos": 42308005, "end_pos": 42368118, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030204", "url": "https://www.ensembl.org/id/ENSSSCG00000030204" } ] } } ], "crossref": [ { "id": "ENSSSCG00000030204", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030204", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100739651", "url": "https://www.ncbi.nlm.nih.gov/gene/100739651", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009286", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009286", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100739651", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739651", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HRQHCIV", "url": "https://omabrowser.org/oma/group/HRQHCIV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SUD9", "url": "https://www.orthodb.org/?gene=F1SUD9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14456", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14456", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14456:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14456:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1855167", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855167", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1855191", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855191", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_013851236", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_013851236", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "20313", "url": "https://www.rhea-db.org/rhea/20313", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SUD9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LHR4", "url": "https://www.uniprot.org/uniprotkb/I3LHR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LHR4-1", "url": "https://www.uniprot.org/uniprotkb/I3LHR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEGKMDENEWRYHGEGNKSLVVAHEQRCVVLRFLKFPPNRKKTSEEIFQHLQNIVDFGKNVMKEFLGENYVHCGEVVQLPLDFVKQLCLKIQCERPESRCDKDLDTLSGYALCLPNLARLQTYHFAEHRPILCVEIKPKCGFIPFSSEVTHEMKHKVCRYCMHQHLKVATGKWKQISKYCPLDLYSGNKQRMYFALKSLLQEAQNNLKIFKNGELIYGCKDARGPMADWSELAHHLKPFFFPSNGLAGGPHCTRAVIRELVRVITRVLLSGSDKGRAGALRSGPGLRGPAVCEASPFSRSPHCQGKSTPERSGLPKGCLLYKTLQVQMLDLLDIEGLYPLYRRVERYLEEFPEERKALQIDGPYDEAFYQRLLDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQDASSDQRPIVPSSRSRFAFSVSVLDLDLKPYESIPHQYKLDGKIVNYYSKTVHAKDATLMSTRFKESEDCTLVLHKV", "length": 491, "header": "tr|F1SUD9-1|F1SUD9_PIG Isoform 1 of Inositol-pentakisphosphate 2-kinase OS=Sus scrofa OX=9823 GN=IPPK PE=3 SV=5 CANONICAL=F1SUD9-1" }, "isoforms": [ { "isoform_ac": "F1SUD9-1", "url": "https://www.uniprot.org/uniprotkb/F1SUD9/entry#F1SUD9-1", "sequence": { "sequence": "MDEGKMDENEWRYHGEGNKSLVVAHEQRCVVLRFLKFPPNRKKTSEEIFQHLQNIVDFGKNVMKEFLGENYVHCGEVVQLPLDFVKQLCLKIQCERPESRCDKDLDTLSGYALCLPNLARLQTYHFAEHRPILCVEIKPKCGFIPFSSEVTHEMKHKVCRYCMHQHLKVATGKWKQISKYCPLDLYSGNKQRMYFALKSLLQEAQNNLKIFKNGELIYGCKDARGPMADWSELAHHLKPFFFPSNGLAGGPHCTRAVIRELVRVITRVLLSGSDKGRAGALRSGPGLRGPAVCEASPFSRSPHCQGKSTPERSGLPKGCLLYKTLQVQMLDLLDIEGLYPLYRRVERYLEEFPEERKALQIDGPYDEAFYQRLLDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQDASSDQRPIVPSSRSRFAFSVSVLDLDLKPYESIPHQYKLDGKIVNYYSKTVHAKDATLMSTRFKESEDCTLVLHKV", "length": 491, "header": "tr|F1SUD9-1|F1SUD9_PIG Isoform 1 of Inositol-pentakisphosphate 2-kinase OS=Sus scrofa OX=9823 GN=IPPK PE=3 SV=5 CANONICAL=F1SUD9-1" }, "locus": { "chromosome": "3", "start_pos": 42367992, "end_pos": 42310809, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008849.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008849.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008625.5", "url": "https://www.ensembl.org/id/ENSSSCP00000008625.5" } ] } }, { "isoform_ac": "I3LHR4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUD9/entry#I3LHR4-1", "sequence": { "sequence": "MDEGKMDENEWRYHGEGNKSLVVAHEQRCVVLRFLKFPPNRKKTSEEIFQHLQNIVDFGKNVMKEFLGENYVHCGEVVQLPLDFVKQLCLKIQCERPESRCDKDLDTLSGYALCLPNLARLQTYHFAEHRPILCVEIKPKCGFIPFSSEVTHEMKHKVCRYCMHQHLKVATGKWKQISKYCPLDLYSGLLQEAQNNLKIFKNGELIYGCKDARGPMADWSELAHHLKPFFFPSNGLAGGPHCTRAVIRELVRVITRVLLSGSDKGRAGALRSGPGLRGPAVCEASPFSRSPHCQGKSTPERSGLPKGCLLYKTLQVQMLDLLDIEGLYPLYRRVERYLEEFPEERKALQIDGPYDEAFYQRLLDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQDASSDQRPIVPSSRSRFAFSVSVLDLDLKPYESIPHQYKLDGKIVNYYSKTVHAKDATLMSTRFKESEDCTLVLHKV", "length": 480, "header": "tr|I3LHR4-1|F1SUD9_PIG Computationally mapped isoform of Inositol-pentakisphosphate 2-kinase OS=Sus scrofa OX=9823 GN=IPPK PE=3 SV=3 CANONICAL=F1SUD9-1" }, "locus": { "chromosome": "3", "start_pos": 42367992, "end_pos": 42310809, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025658.3", "url": "https://www.ensembl.org/id/ENSSSCT00000025658.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000023611.3", "url": "https://www.ensembl.org/id/ENSSSCP00000023611.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LHR4", "url": "https://www.uniprot.org/uniprotkb/I3LHR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100739651", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100739651", "resource": "KEGG Pathway" }, { "id": "R-SSC-1855167", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855167", "resource": "Reactome", "description": "Synthesis of pyrophosphates in the cytosol" }, { "id": "R-SSC-1855191", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855191", "resource": "Reactome", "description": "Synthesis of IPs in the nucleus" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HP30-1", "protein_name": "Inositol-pentakisphosphate 2-kinase", "gene_name": "Ippk", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEEGKMDENEWGYHGEGNKSLVVAHAQRCVVLRFLKFPPNKKKTSEEILQHLQNIVDFGKNVMKDFLGENYVHCGEVVQLPLEFVKQLCLKIQCERPESRCDKDLDTLSGYAMCLPNLTRLQTYHFAEHRPILCVEIKPKCGFIPFSNDVTHEMKHKVCRYCMHQHLKVATGKWKKISKYCPLDLYSGNKQRMHFALKSLLQEAQNNLRIFKNGQLIYGCGDARSPVADLKELAHHLKPFFFPSNGLASGPHCTRAVIRELVHVITRVLLSSSDKGRAGALRLGLQGPRVCEASPFSRSLHHQGKNTPERSGLPKGCLLYKTLQVQMLDQLDIEGLYPLYNRVERYLEEFPEERKTLQIDGPYDEVFYQKLLDLSTEDDGTVAFALRKVQQYRVAMTAKDCSIMIALSPYLQGTSSDQRPVIPSSRSRLAFSVSVLDLDLKPYESIPHQYKLDSKIVNYYSKTVHAKDDTVRSTRFKEHEDCTLVLHKV", "length": 489 }, "evidence": [ { "id": "F1SUD9", "url": "https://omabrowser.org/oma/group/F1SUD9/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q4JL91-1", "protein_name": "Inositol-pentakisphosphate 2-kinase", "gene_name": "ippk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MELDKMDENDWKYHGEGNKSIVVSHLRHCQVLRLLKVPSEDSAHTRQTAEQTLRHILNIMDYSKHVMKPLLGEKYVHSGEVVRLPLDFLRQMSLKVQQERPELRCDKVMDTFSGCGLCLPDLTQLPLHHLRDHRPPICVEIKPKCGFLPFSRHMTKECKWKVCRFCMHQHYKLANGKWKRLSRYCPLDLFSGSKQRMYVALKNLLEEPQNNLKIFKGGELIFSCKDDAKQQPDLNNLIQHLRPYFPHTNGLYNGHQPGKVILNEFIQVICSALLSGGDSNRSGEPRKMHLSESKPHCEASPFPRDLIRNGHHGLPKDSVLAKILQVQMLDNLDIEGIYPLYKRVEQYLEEFPKERIRLQIDGPYDESFMDTVKSCLNEDDGSVEYAIGKVHQYRVAMTAKDCSVMITFAPCEEDEEHKLNLEKPRFTYSVSILDLDTKPYEGIPHQYKLDSKIVNYYLRSTQAPPPSSLYKERQECTLLFHAV", "length": 483 }, "evidence": [ { "id": "F1SUD9", "url": "https://omabrowser.org/oma/group/F1SUD9/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q54J22-1", "protein_name": "Inositol-pentakisphosphate 2-kinase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTCNISKVDIGLPEYWVYKGEGAMNIVLSYNGPRNEKLDGLVLRVKKLSNGGSDLEKEIGLYNFVSNVMSPLLGDKYVFPGSMINVTSDFLVKLDNLIFNYRPIKRSTIRLDTNLTTAFLIMDLTRLDNNTPNQIEYLHHHNDNDNNNDNNDNNNNDNNDNNNNNNNEIGNNKFSKVICIEIKPKWAFLPKPHKYMNRELLDVKLNKCRYCMHQQLKLKEGSIDEISSYCPLDLFSSDCNRQKQSIINMIHHPQNNLKVYCDGILSFTGSLGGGVERNKSTNSNLLSSLLINSNIIKNNKKEEKEEKEEKGGKEEEEIERNIYLLSTIISSILQRETILQNIKNVQLYDDMDIEGIYYLYNKLNGGQVNNDINYEELNKLTDSEAKEKIDRFMISCTAKDCSIMISFNVDNPINNNNNNNNNNNNNNNNNNNNNNNNNNNNNINDVDSYFNFINTIDIGDNDDTLINSSGNKGKTNIHYKIGVVDLDTKKMNAIPKYYKLDQDIVKLYKSNINTIKSCK", "length": 519 }, "evidence": [ { "id": "F1SUD9", "url": "https://omabrowser.org/oma/group/F1SUD9/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5PXE9-1", "protein_name": "Inositol-pentakisphosphate 2-kinase", "gene_name": "Ippk", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEGKMDENEWSYHGEGNKSLVVAHAQRCVVLRFLKFPPNKKKTSEEILQHLQNIVDFGKNVMKDFLGENYVHCGEVVQLPLEFVKQLCLKIQCERPESRCDKDLDTLSGYAMCLPNLTRLQTFPFAEHRPILCVEIKPKCGFIPFSNGVTHEMKHKVCRYCMHQHLKVATGKWKKISKYCPLDLYSGNKQRMHFALKSLLQEAQNNLRIFKNGELIYGCADARSPVADLKALAHHLKPFFFPSNGLASGPQCTRAVIRELVHVITRVLLSTSDKGRAGALRLGLQGARVCEASPFSRSLHHQGKNTPEHSGLPKGCLLYKTLQVQMLDQLDIEGLYPLYNRVEQYLEEFPEERKTLQIDGPYDEVFYQKLLDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQGASSDQRPVIPSSRSRLAFSVSVLDLDLKPYESIPHQYKLDSKIVSYYSKTVHAKDDTVRSTRFKEHEDCTLVLHKV", "length": 489 }, "evidence": [ { "id": "F1SUD9", "url": "https://omabrowser.org/oma/group/F1SUD9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6P1C1-1", "protein_name": "Inositol-pentakisphosphate 2-kinase", "gene_name": "Ippk", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEEGKMDENEWSYHGEGNKSLVVAHAQRCVVLRFLKFPPNKKKTSEEILQHLQNIVDFGKNVMKDFLGENYVHCGEVVQLPLEFVKQLCLKIQCERPESRCDKDLDTFSGYAMCLPNLTRLQTFHFAEHRPILCVEIKPKCGFIPFSNDVTHEMKHKVCRYCMHQHLKVATGKWKKISKYCPLDLYSGNKQRMHFALRSLLQETQNNLRIFKNGELIYGCGDARSPVADLKELAHHLKPFFFPSNGLASGPHCTKAVIRELVHVITRVLLSSSEKARAGALRLGLQGPRVCEASPFSRSLHNQGKNTSEHSGLPKGCLLYKTLQVQMLDQLDIEGLYPLYKRVEQYLEEFPEERKTLQIDGPYDEVFYQKLLDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQGTSSDQRPVIPSSRSRLAFSVSVLDLDLKPYESIPHQYKLDSKIVNYYSKTVHAKDDTVRSTRFKEHEDCTLVLHKV", "length": 489 }, "evidence": [ { "id": "F1SUD9", "url": "https://omabrowser.org/oma/group/F1SUD9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q93YN9-1", "protein_name": "Inositol-pentakisphosphate 2-kinase", "gene_name": "IPK1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMILEEKDASDWIYRGEGGANLVLAYAGSSPLFVGKVIRIQKARRNDKAIKNANGVVSVLTSDEQHLWRENNELISSPNKEVLEQRYVKNVIIPLLGPKHVDAGVRVSVSKEFLECVDKKVTKQRPLWRVNAANVDTSHDSALILNDHSLFSQGISSGGDCISVEIKPKCGFLPTSRFIGKENMLKTSVSRFKMHQLLKLEYNEISEESEYDPLDLFSGSKESVLEAIKALYSTPQNNFRVFLNGSLILGGSGESTGRTSPEIGYAFEDALKGFIQSEDGHRTECFLQLVSDAVYGSGVLDRLLEIQKLDKLDIEGAIHSYYDLINQPCPICKEGKPLEAELSLHALPLDESLKIVKEYLIAATAKDCSIMISFQSRNAWDSEPSGDYVSLKPTNQTFDYKVHFIDLSLKPLKRMESYYKLDKKIISFYNRKQKAENTAEQIGNSKPSHS", "length": 451 }, "evidence": [ { "id": "F1SUD9", "url": "https://omabrowser.org/oma/group/F1SUD9/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9H8X2-1", "protein_name": "Inositol-pentakisphosphate 2-kinase", "gene_name": "IPPK", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEGKMDENEWGYHGEGNKSLVVAHAQRCVVLRFLKFPPNRKKTSEEIFQHLQNIVDFGKNVMKEFLGENYVHYGEVVQLPLEFVKQLCLKIQSERPESRCDKDLDTLSGYAMCLPNLTRLQTYRFAEHRPILCVEIKPKCGFIPFSSDVTHEMKHKVCRYCMHQHLKVATGKWKQISKYCPLDLYSGNKQRMHFALKSLLQEAQNNLKIFKNGELIYGCKDARSPVADWSELAHHLKPFFFPSNGLASGPHCTRAVIRELVHVITRVLLSGSDKGRAGTLSPGLGPQGPRVCEASPFSRSLRCQGKNTPERSGLPKGCLLYKTLQVQMLDLLDIEGLYPLYNRVERYLEEFPEERKTLQIDGPYDEAFYQKLLDLSTEDDGTVAFALTKVQQYRVAMTAKDCSIMIALSPCLQDASSDQRPVVPSSRSRFAFSVSVLDLDLKPYESIPHQYKLDGKIVNYYSKTVRAKDNAVMSTRFKESEDCTLVLHKV", "length": 491 }, "evidence": [ { "id": "F1SUD9", "url": "https://omabrowser.org/oma/group/F1SUD9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ], "pmid": "" }, { "name": "inositol-1,3,4,5,6-pentakisphosphate 2-kinase activity", "id": "GO:0035299", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035299", "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of transcription of nucleolar large rRNA by RNA polymerase I", "id": "GO:1901838", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901838", "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ], "pmid": "" }, { "name": "inositol phosphate biosynthetic process", "id": "GO:0032958", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032958", "evidence": [ { "database": "UniProtKB", "id": "F1SUD9", "url": "https://www.uniprot.org/uniprotkb/F1SUD9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 18, "end_pos": 20, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20313", "name": "", "equation": "1D-myo-inositol 1,3,4,5,6-pentakisphosphate + ATP = 1D-myo-inositol hexakisphosphate + ADP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "20313", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20313" } ] }, { "id": "R-SSC-1855176", "name": "I(1,3,4,5,6)P5 is phosphorylated to IP6 by IPPK (IP5-2K) in the nucleus", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1855176", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855176" } ] }, { "id": "R-SSC-1855179", "name": "I(1,3,4,5,6)P5 is phosphorylated to IP6 by IPPK in the cytosol", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1855179", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1855179" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 18, "end_pos": 20 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUE6-1", "uniprot_ac": "F1SUE6", "uniprot_id": "F1SUE6_PIG", "mass": { "chemical_mass": 64902.0, "monoisotopic_mass": 64902.0 }, "refseq": {}, "gene_names": [ { "name": "TYSND1", "type": "recommended", "evidence": [ { "id": "F1SUE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUE6" } ] } ], "protein_names": [ { "name": "Peroxisomal leader peptide-processing protease", "type": "recommended", "evidence": [ { "id": "F1SUE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUE6/entry#names_and_taxonomy" } ] }, { "name": "3.4.21.-", "type": "synonym", "evidence": [ { "id": "F1SUE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUE6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Peroxisomal protease that mediates both the removal of the leader peptide from proteins containing a PTS2 target sequence and processes several PTS1-containing proteins. Catalyzes the processing of PTS1-proteins involved in the peroxisomal beta-oxidation of fatty acids.", "evidence": [ { "database": "UniProtKB", "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6#function" }, { "database": "UniProtKB", "id": "PIRNR037989", "url": "https://www.uniprot.org/uniprotkb/PIRNR037989#function" }, { "database": "UniProtKB", "id": "ARBA00060175", "url": "https://www.uniprot.org/uniprotkb/ARBA00060175#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TYSND1", "url": "https://www.uniprot.org/uniprotkb/F1SUE6", "locus": { "chromosome": "14", "start_pos": 73077168, "end_pos": 73088790, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010259", "url": "https://www.ensembl.org/id/ENSSSCG00000010259" } ] } } ], "crossref": [ { "id": "F1SUE6", "url": "https://alphafold.ebi.ac.uk/entry/F1SUE6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010259", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010259", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039245", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039245", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CWKSTEW", "url": "https://omabrowser.org/oma/group/CWKSTEW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR21004", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21004", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21004:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21004:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13365", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13365", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9033241", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033241", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9033500", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033500", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUE6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRQWGPAMRAAEQAGCMVSASRAGQPKAGLWSCSGVILSRRPGLVLCHGGIFTHFLRAGSGALTVAGAAFLPGDSCSDDLRLHVQWGPTAASPAGRAERGRAGLCTPQCAGLDPGPPARPRGRQLQPPRPAELLLLLSCPIFRGQFARLFGSETAEQWHFASAAPEDEVSEEEEEDQLRALGWFALLRVLPDPEREAEAVERGPIVAVAPLGAVPKGAPLLACGSPFGAFCPDIFLNTLSRGVLSNSAGPLLLTDARCLPGTEGGGVFAARPAGTLVALVAAPLCWKAREWVGLTLLCAAAPLLCAARDALCHLHPGTDALAAFLPQEMGAPWDRPLRDPGPPWAAAAVLVECGSVWGSGVAVAPRLVVTCRHVAPREAAGVLVRSTTPKGAIIWGHVVFATQETSPYDIAVVSLEEDLEGVPIPVPAEDFHEGEAVTVVGFGVFGQACGPSVTSGILSAVVQVDDTPVMLQTTCAVHGGSSGGPLFSTCSGNLLGIIASNTRDNNTGATYPHLNFSIPITVLQPALQRTIRQEIWAASGSWTAPLSQSGWCGGCSNPRQRPHGASSEAVSPLWREEQPLYATGSAKAGDLRILTQHAAAGLPPVASPGVWIKLLISLYGSLT", "length": 624, "header": "tr|F1SUE6-1|F1SUE6_PIG Isoform 1 of Peroxisomal leader peptide-processing protease OS=Sus scrofa OX=9823 GN=TYSND1 PE=3 SV=3 CANONICAL=F1SUE6-1" }, "isoforms": [ { "isoform_ac": "F1SUE6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUE6/entry#F1SUE6-1", "sequence": { "sequence": "MGRQWGPAMRAAEQAGCMVSASRAGQPKAGLWSCSGVILSRRPGLVLCHGGIFTHFLRAGSGALTVAGAAFLPGDSCSDDLRLHVQWGPTAASPAGRAERGRAGLCTPQCAGLDPGPPARPRGRQLQPPRPAELLLLLSCPIFRGQFARLFGSETAEQWHFASAAPEDEVSEEEEEDQLRALGWFALLRVLPDPEREAEAVERGPIVAVAPLGAVPKGAPLLACGSPFGAFCPDIFLNTLSRGVLSNSAGPLLLTDARCLPGTEGGGVFAARPAGTLVALVAAPLCWKAREWVGLTLLCAAAPLLCAARDALCHLHPGTDALAAFLPQEMGAPWDRPLRDPGPPWAAAAVLVECGSVWGSGVAVAPRLVVTCRHVAPREAAGVLVRSTTPKGAIIWGHVVFATQETSPYDIAVVSLEEDLEGVPIPVPAEDFHEGEAVTVVGFGVFGQACGPSVTSGILSAVVQVDDTPVMLQTTCAVHGGSSGGPLFSTCSGNLLGIIASNTRDNNTGATYPHLNFSIPITVLQPALQRTIRQEIWAASGSWTAPLSQSGWCGGCSNPRQRPHGASSEAVSPLWREEQPLYATGSAKAGDLRILTQHAAAGLPPVASPGVWIKLLISLYGSLT", "length": 624, "header": "tr|F1SUE6-1|F1SUE6_PIG Isoform 1 of Peroxisomal leader peptide-processing protease OS=Sus scrofa OX=9823 GN=TYSND1 PE=3 SV=3 CANONICAL=F1SUE6-1" }, "locus": { "chromosome": "14", "start_pos": 73088693, "end_pos": 73080112, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011229.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011229.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010937.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010937.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 90, "start_aa": "Thr", "end_pos": 90, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr90", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9033241", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033241", "resource": "Reactome", "description": "Peroxisomal protein import" }, { "id": "R-SSC-9033500", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033500", "resource": "Reactome", "description": "TYSND1 cleaves peroxisomal proteins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protease binding", "id": "GO:0002020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002020", "evidence": [ { "database": "UniProtKB", "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6" } ], "pmid": "" }, { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "peroxisome", "id": "GO:0005777", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005777", "evidence": [ { "database": "UniProtKB", "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6" } ], "pmid": "" }, { "name": "peroxisomal matrix", "id": "GO:0005782", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005782", "evidence": [ { "database": "UniProtKB", "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein processing", "id": "GO:0016485", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016485", "evidence": [ { "database": "UniProtKB", "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6" } ], "pmid": "" }, { "name": "regulation of fatty acid beta-oxidation", "id": "GO:0031998", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031998", "evidence": [ { "database": "UniProtKB", "id": "F1SUE6", "url": "https://www.uniprot.org/uniprotkb/F1SUE6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 506, "end_pos": 508, "annotation": "n_glycosylation_sequon" }, { "start_pos": 516, "end_pos": 518, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-9033235", "name": "Cargo of PEX5S,L translocates from the cytosol to the peroxisomal matrix", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9033235", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033235" } ] }, { "id": "R-SSC-9033236", "name": "PEX5S,L:Cargo binds PEX13:PEX14:PEX2:PEX10:PEX12 (Docking and Translocation Module)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal membrane", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9033236", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033236" } ] }, { "id": "R-SSC-9033520", "name": "TYSND1 cleaves TYSND1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "peroxisomal matrix", "input_participant_list": [ "R-SSC-8933309" ], "output_participant_list": [ "R-SSC-9033587", "R-SSC-9033589" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9033520", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9033520" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-8933309", "participant_name": "TYSND1 [peroxisomal matrix]", "crossref": [ { "id": "F1SUE6", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000010259", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000010937", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000011229", "database": "ENSEMBL", "url": "" }, { "id": "94621", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9033587", "participant_name": "TYSND1 [peroxisomal matrix]", "crossref": [ { "id": "ENSSSCT00000011229", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000010259", "database": "ENSEMBL", "url": "" }, { "id": "94621", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000010937", "database": "ENSEMBL", "url": "" }, { "id": "F1SUE6", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-9033589", "participant_name": "TYSND1 [peroxisomal matrix]", "crossref": [ { "id": "ENSSSCT00000011229", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000010259", "database": "ENSEMBL", "url": "" }, { "id": "F1SUE6", "database": "UniProt", "url": "" }, { "id": "94621", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000010937", "database": "ENSEMBL", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUE6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 624, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUE6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUE6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 90 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 506, "end_pos": 508 }, { "start_pos": 516, "end_pos": 518 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUF1-1", "uniprot_ac": "F1SUF1", "uniprot_id": "F1SUF1_PIG", "mass": { "chemical_mass": 45539.0, "monoisotopic_mass": 45539.0 }, "refseq": {}, "gene_names": [ { "name": "TACR2", "type": "recommended", "evidence": [ { "id": "F1SUF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" } ] } ], "protein_names": [ { "name": "Substance-K receptor", "type": "recommended", "evidence": [ { "id": "F1SUF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUF1/entry#names_and_taxonomy" } ] }, { "name": "NK-2 receptor", "type": "synonym", "evidence": [ { "id": "F1SUF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUF1/entry#names_and_taxonomy" } ] }, { "name": "Neurokinin A receptor", "type": "synonym", "evidence": [ { "id": "F1SUF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUF1/entry#names_and_taxonomy" } ] }, { "name": "Tachykinin receptor 2", "type": "synonym", "evidence": [ { "id": "F1SUF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUF1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Receptor for the tachykinin substance K (neurokinin A), also able to bind and respond to tachynins substance P and neurokinin B/neuromedin-K. The rank order of affinity of this receptor to tachykinins is: substance K > neuromedin-K > substance P. Substance K binding to its receptor triggers G protein-coupled receptor signaling via activation of G(q) and phosphatidylinositol hydrolysis by phospholipase C. Substance K binding also triggers signaling via activation of adenylate cyclase activity which results in increased intracellular levels of cyclic AMP (cAMP).", "evidence": [ { "database": "UniProtKB", "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1#function" }, { "database": "UniProtKB", "id": "ARBA00094284", "url": "https://www.uniprot.org/uniprotkb/ARBA00094284#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TACR2", "url": "https://www.uniprot.org/uniprotkb/F1SUF1", "locus": { "chromosome": "14", "start_pos": 72462046, "end_pos": 72475554, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010254", "url": "https://www.ensembl.org/id/ENSSSCG00000010254" } ] } } ], "crossref": [ { "id": "F1SUF1", "url": "https://alphafold.ebi.ac.uk/entry/F1SUF1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010254", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010254", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16004", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16004", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000913", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000913", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RRVNRCH", "url": "https://omabrowser.org/oma/group/RRVNRCH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46925", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46925", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46925:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46925:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-380095", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380095", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUF1-1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGACDVVTDANISSGFESNITGTTTFSMPGWQLALWAAAYLTLVLVAVMGNATVIWIILAHRRMRTVTNYFIVNLALADLCMAAFNATFNFVYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAADRYMAIVHPFQPRLSAKGTRAVIAGIWLVALALAFPQCFYSTITMDQGATKCVVAWPEDGGGKMLLLYHLVVIALIYFLPLVVMFVAYSVIGLTLWRRTVPGHQAHGANLRHLQAKKKFVKTMVLVVVTFAICWLPYHLYFLLGSFQEDIYCHKFIQQVYLALFWLAMSSTMYNPIIYCCLNHRFRSGFRLAFRCCPWVTPTKEDKIELIHTPSLSKKVKRCHTKELCSWLGMWSPLRLPMGRPKMECLLNPEALRLAAGGGSAPLRSSQLRGPL", "length": 404, "header": "tr|F1SUF1-1|F1SUF1_PIG Isoform 1 of Substance-K receptor OS=Sus scrofa OX=9823 GN=TACR2 PE=3 SV=2 CANONICAL=F1SUF1-1" }, "isoforms": [ { "isoform_ac": "F1SUF1-1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1/entry#F1SUF1-1", "sequence": { "sequence": "MGACDVVTDANISSGFESNITGTTTFSMPGWQLALWAAAYLTLVLVAVMGNATVIWIILAHRRMRTVTNYFIVNLALADLCMAAFNATFNFVYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAADRYMAIVHPFQPRLSAKGTRAVIAGIWLVALALAFPQCFYSTITMDQGATKCVVAWPEDGGGKMLLLYHLVVIALIYFLPLVVMFVAYSVIGLTLWRRTVPGHQAHGANLRHLQAKKKFVKTMVLVVVTFAICWLPYHLYFLLGSFQEDIYCHKFIQQVYLALFWLAMSSTMYNPIIYCCLNHRFRSGFRLAFRCCPWVTPTKEDKIELIHTPSLSKKVKRCHTKELCSWLGMWSPLRLPMGRPKMECLLNPEALRLAAGGGSAPLRSSQLRGPL", "length": 404, "header": "tr|F1SUF1-1|F1SUF1_PIG Isoform 1 of Substance-K receptor OS=Sus scrofa OX=9823 GN=TACR2 PE=3 SV=2 CANONICAL=F1SUF1-1" }, "locus": { "chromosome": "14", "start_pos": 72474986, "end_pos": 72463424, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011224.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011224.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010932.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010932.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-380095", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380095", "resource": "Reactome", "description": "Tachykinin receptors bind tachykinins" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MRT4-1", "protein_name": "Substance-K receptor", "gene_name": "Tacr2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGARAIVTDTSILSGLESNTTGVTAFSMPAWQLALWATAYLALVLVAVTGNATVIWIILAHERMRTVTNYFIVNLALADLCMAAFNATFNFVYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAADRYMAIVHPFQPRLSAPSTKAVIAGIWLVALALASPQCFYSTITVDQGATKCVVAWPNDNGGKMLLLYHLVVFVLVYFLPLVVMFVAYSVIGLTLWKRAVPRHQAHGANLRHLQAKKKFVKAMVLVVVTFAICWLPYHLYFILGSFQKDIYYRKFIQQVYLALFWLAMSSTTYNPVIYCCLNHRFRSGFRLAFRCCPWVTPTEEDRLELTHTPSLSRRVNRCHTKETLFMTADMTPSEATNGQVGSPQDGEPVGP", "length": 384 }, "evidence": [ { "id": "F1SUF1", "url": "https://omabrowser.org/oma/group/F1SUF1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "F1QPL8-1", "protein_name": "Substance-K receptor", "gene_name": "tacr2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDTTLDPLSSSLLYYDEDGNETSINLFEQPDWQVALWAIAYTLIVIISFIGNVTVIWIILAHKRMRTVTNYFIVNLAFSDASMATFNTVFNFVYALHNDWYFGLGYCKFQNFFPITAMFSSIYSMAAIAVDRYMAIIHPLKPRLSSTTTKLLIGVIWTVAFSLAFPQCYYASTKFYFPRTVCMVEWPDDYGGKHQLSYQIAVIILIYLLPLLVMLVTYSLVGQRLWGSEIPGEASDHYQNQMQAKRKVVKMMIVVVTTFAICWLPYHIYFILGSFNRDIYKQHYIQQVYLAIFWLAMSSTMYNPIIYCCLNQRFRSGFRKAFQWCPFVKISEEDNMELQHMRTFHMRRSYRTETTSVVVRNHANEPEDTTSKLIKA", "length": 376 }, "evidence": [ { "id": "F1SUF1", "url": "https://omabrowser.org/oma/group/F1SUF1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P05363-1", "protein_name": "Substance-K receptor", "gene_name": "TACR2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGACVVMTDINISSGLDSNATGITAFSMPGWQLALWTAAYLALVLVAVMGNATVIWIILAHQRMRTVTNYFIVNLALADLCMAAFNAAFNFVYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAADRYMAIVHPFQPRLSAPGTRAVIAGIWLVALALAFPQCFYSTITTDEGATKCVVAWPEDSGGKMLLLYHLIVIALIYFLPLVVMFVAYSVIGLTLWRRSVPGHQAHGANLRHLQAKKKFVKTMVLVVVTFAICWLPYHLYFILGTFQEDIYCHKFIQQVYLALFWLAMSSTMYNPIIYCCLNHRFRSGFRLAFRCCPWVTPTEEDKMELTYTPSLSTRVNRCHTKEIFFMSGDVAPSEAVNGQAESPQAGVSTEP", "length": 384 }, "evidence": [ { "id": "F1SUF1", "url": "https://omabrowser.org/oma/group/F1SUF1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P16610-1", "protein_name": "Substance-K receptor", "gene_name": "Tacr2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTRAIVSDANILSGLESNATGVTAFSMPGWQLALWATAYLALVLVAVTGNATVIWIILAHERMRTVTNYFIINLALADLCMAAFNATFNFIYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAADRYMAIVHPFQPRLSAPSTKAIIAGIWLVALALASPQCFYSTITVDEGATKCVVAWPNDNGGKMLLLYHLVVFVLIYFLPLLVMFGAYSVIGLTLWKRAVPRHQAHGANLRHLQAKKKFVKAMVLVVLTFAICWLPYHLYFILGTFQEDIYYHKFIQQVYLALFWLAMSSTMYNPIIYCCLNHRFRSGFRLAFRCCPWVTPTEEDRLELTHTPSLSRRVNRCHTKETLFMTGDMTHSEATNGQVGSPQDGEPAGPICKAQA", "length": 390 }, "evidence": [ { "id": "F1SUF1", "url": "https://omabrowser.org/oma/group/F1SUF1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21452-1", "protein_name": "Substance-K receptor", "gene_name": "TACR2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGTCDIVTEANISSGPESNTTGITAFSMPSWQLALWATAYLALVLVAVTGNAIVIWIILAHRRMRTVTNYFIVNLALADLCMAAFNAAFNFVYASHNIWYFGRAFCYFQNLFPITAMFVSIYSMTAIAADRYMAIVHPFQPRLSAPSTKAVIAGIWLVALALASPQCFYSTVTMDQGATKCVVAWPEDSGGKTLLLYHLVVIALIYFLPLAVMFVAYSVIGLTLWRRAVPGHQAHGANLRHLQAMKKFVKTMVLVVLTFAICWLPYHLYFILGSFQEDIYCHKFIQQVYLALFWLAMSSTMYNPIIYCCLNHRFRSGFRLAFRCCPWVTPTKEDKLELTPTTSLSTRVNRCHTKETLFMAGDTAPSEATSGEAGRPQDGSGLWFGYGLLAPTKTHVEI", "length": 398 }, "evidence": [ { "id": "F1SUF1", "url": "https://omabrowser.org/oma/group/F1SUF1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P30549-1", "protein_name": "Substance-K receptor", "gene_name": "Tacr2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGAHASVTDTNILSGLESNATGVTAFSMPGWQLALWATAYLALVLVAVTGNATVIWIILAHERMRTVTNYFIINLALADLCMAAFNATFNFIYASHNIWYFGSTFCYFQNLFPVTAMFVSIYSMTAIAADRYMAIVHPFQPRLSAPSTKAVIAVIWLVALALASPQCFYSTITVDQGATKCVVAWPNDNGGKMLLLYHLVVFVLIYFLPLVVMFAAYSVIGLTLWKRAVPRHQAHGANLRHLQAKKKFVKAMVLVVVTFAICWLPYHLYFILGTFQEDIYYRKFIQQVYLALFWLAMSSTMYNPIIYCCLNHRFRSGFRLAFRCCPWGTPTEEDRLELTHTPSISRRVNRCHTKETLFMTGDMTHSEATNGQVGGPQDGEPAGP", "length": 384 }, "evidence": [ { "id": "F1SUF1", "url": "https://omabrowser.org/oma/group/F1SUF1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "sperm head", "id": "GO:0061827", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061827", "evidence": [ { "database": "UniProtKB", "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "substance K receptor activity", "id": "GO:0016497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016497", "evidence": [ { "database": "UniProtKB", "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of flagellated sperm motility", "id": "GO:1902093", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902093", "evidence": [ { "database": "UniProtKB", "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" } ], "pmid": "" }, { "name": "regulation of uterine smooth muscle contraction", "id": "GO:0070472", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070472", "evidence": [ { "database": "UniProtKB", "id": "F1SUF1", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUF1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 404, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUF1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUF1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUF1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUF1" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 307, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 }, { "start_pos": 19, "end_pos": 21 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUG8-1", "uniprot_ac": "F1SUG8", "uniprot_id": "F1SUG8_PIG", "mass": { "chemical_mass": 80743.0, "monoisotopic_mass": 80743.0 }, "refseq": {}, "gene_names": [ { "name": "DDX50", "type": "recommended", "evidence": [ { "id": "F1SUG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" } ] } ], "protein_names": [ { "name": "ATP-dependent RNA helicase DDX50", "type": "recommended", "evidence": [ { "id": "F1SUG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUG8/entry#names_and_taxonomy" } ] }, { "name": "3.6.4.13", "type": "synonym", "evidence": [ { "id": "F1SUG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUG8/entry#names_and_taxonomy" } ] }, { "name": "DEAD box protein 50", "type": "synonym", "evidence": [ { "id": "F1SUG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUG8/entry#names_and_taxonomy" } ] }, { "name": "Gu-beta", "type": "synonym", "evidence": [ { "id": "F1SUG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUG8/entry#names_and_taxonomy" } ] }, { "name": "Nucleolar protein Gu2", "type": "synonym", "evidence": [ { "id": "F1SUG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUG8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "ATP-dependent RNA helicase that may play a role in various aspects of RNA metabolism including pre-mRNA splicing or ribosomal RNA production. Also acts as a viral restriction factor and promotes the activation of the NF-kappa-B and IRF3 signaling pathways following its stimulation with viral RNA or infection with RNA and DNA viruses. For instance, decreases vaccinia virus, herpes simplex virus, Zika virus or dengue virus replication during the early stage of infection. Mechanistically, acts via the adapter TICAM1 and independently of the DDX1-DDX21-DHX36 helicase complex to induce the production of interferon-beta.", "evidence": [ { "database": "UniProtKB", "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8#function" }, { "database": "UniProtKB", "id": "ARBA00055728", "url": "https://www.uniprot.org/uniprotkb/ARBA00055728#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DDX50", "url": "https://www.uniprot.org/uniprotkb/F1SUG8", "locus": { "chromosome": "14", "start_pos": 72030980, "end_pos": 71989584, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010246", "url": "https://www.ensembl.org/id/ENSSSCG00000010246" } ] } } ], "crossref": [ { "id": "F1SUG8", "url": "https://alphafold.ebi.ac.uk/entry/F1SUG8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010246", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010246", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17944", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17944", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18787", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18787", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012562", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012562", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014001", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014001", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059027", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059027", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR47959", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47959", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47959:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47959:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00270", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00270", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00271", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00271", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08152", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08152", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26142", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26142", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "13065", "url": "https://www.rhea-db.org/rhea/13065", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUG8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMPGKLLWGDIMELEAPLEETESQRKERQKSDRRKSRHHYDSEEKSETRENGVADDLDAPKPKKAKVKEKLNGDTEEGCNRLADEFSKSRKSRRKDLSSLDSSTHKSSDNKPEESLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNKKLSSNVLSQITRMCLLKGNMGVCFDVSTAESERLQAEWHDSDWILSVPAKLPEIEEHYDGNTASNSRQRSGWSSGRSGRSGRSGGRSGGRAGRQSRQGSRSGCRQDGRRRSGNRNRSRSGGHKRSFD", "length": 723, "header": "tr|F1SUG8-1|F1SUG8_PIG Isoform 1 of ATP-dependent RNA helicase DDX50 OS=Sus scrofa OX=9823 GN=DDX50 PE=3 SV=4 CANONICAL=F1SUG8-1" }, "isoforms": [ { "isoform_ac": "F1SUG8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUG8/entry#F1SUG8-1", "sequence": { "sequence": "MMPGKLLWGDIMELEAPLEETESQRKERQKSDRRKSRHHYDSEEKSETRENGVADDLDAPKPKKAKVKEKLNGDTEEGCNRLADEFSKSRKSRRKDLSSLDSSTHKSSDNKPEESLTREQKEGAFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKKSRSPKVLVLAPTRELANQVAKDFKDITKKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGASSFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNKKLSSNVLSQITRMCLLKGNMGVCFDVSTAESERLQAEWHDSDWILSVPAKLPEIEEHYDGNTASNSRQRSGWSSGRSGRSGRSGGRSGGRAGRQSRQGSRSGCRQDGRRRSGNRNRSRSGGHKRSFD", "length": 723, "header": "tr|F1SUG8-1|F1SUG8_PIG Isoform 1 of ATP-dependent RNA helicase DDX50 OS=Sus scrofa OX=9823 GN=DDX50 PE=3 SV=4 CANONICAL=F1SUG8-1" }, "locus": { "chromosome": "14", "start_pos": 72030769, "end_pos": 71989645, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011216.5", "url": "https://www.ensembl.org/id/ENSSSCT00000011216.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010924.5", "url": "https://www.ensembl.org/id/ENSSSCP00000010924.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" } ], "pmid": "" }, { "name": "RNA helicase activity", "id": "GO:0003724", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003724", "evidence": [ { "database": "UniProtKB", "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SUG8", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" }, { "start_pos": 711, "end_pos": 713, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "13065", "name": "", "equation": "ATP + H2O = ADP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "13065", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/13065" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUG8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 723, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUG8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUG8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" }, { "id": "PS51192", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51192" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase ATP-binding", "eco_id": "ECO_0000259", "start_pos": 154, "end_pos": 333, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUG8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUG8" }, { "id": "PS51194", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Helicase C-terminal", "eco_id": "ECO_0000259", "start_pos": 366, "end_pos": 510, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 387, "end_pos": 389 }, { "start_pos": 711, "end_pos": 713 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUI0-1", "uniprot_ac": "F1SUI0", "uniprot_id": "F1SUI0_PIG", "mass": { "chemical_mass": 61352.0, "monoisotopic_mass": 61352.0 }, "refseq": {}, "gene_names": [ { "name": "NTN3", "type": "recommended", "evidence": [ { "id": "F1SUI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ] } ], "protein_names": [ { "name": "Netrin-3", "type": "recommended", "evidence": [ { "id": "F1SUI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUI0/entry#names_and_taxonomy" } ] }, { "name": "Netrin-2-like protein", "type": "synonym", "evidence": [ { "id": "F1SUI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUI0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Netrins control guidance of CNS commissural axons and peripheral motor axons.", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0#function" }, { "database": "UniProtKB", "id": "ARBA00059126", "url": "https://www.uniprot.org/uniprotkb/ARBA00059126#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NTN3", "url": "https://www.uniprot.org/uniprotkb/F1SUI0", "locus": { "chromosome": "3", "start_pos": 39572531, "end_pos": 39575170, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008054", "url": "https://www.ensembl.org/id/ENSSSCG00000008054" } ] } } ], "crossref": [ { "id": "F1SUI0", "url": "https://alphafold.ebi.ac.uk/entry/F1SUI0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008054", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008054", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00055", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00055", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd03579", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03579", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001134", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001134", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008211", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008211", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10574:SF292", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10574:SF292", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00053", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00053", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00055", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00055", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01759", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01759", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24973", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24973", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUI0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGWPWGLLLTAGTLSAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCGRPATRACDASDPRRAHPAALLTSAGGTASPVCWRSDSLTQVPLNVTLTVPLGKAFELVFVSLRFCSAPPTSVALLKSQDHGRSWAPLGFFSSRCGLDYGRLPAPVDGPAGPGPEALCFPEPQAQPDGGGLLAFSVQDGSPPGLDLDSSPVLQDWVTATDIQVVLTRPTVLGDTRDAAAVVSYSYSATELQVGGRCKCNGHASKCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATAREAHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPVPGPTEESNPVEPQDCDLHCKPARGSYRISLKKFCRKDYAVQVAVGARGEARGSWTRFPVAVLAVFRSGEERARRGSSALWVPARDAACGCPRLLPGRHYLLLGGGPGAAVGGGGRGPGLSAARGSLVLPWRDAWTRRLRRLQRRERRGRCGTA", "length": 579, "header": "tr|F1SUI0-1|F1SUI0_PIG Isoform 1 of Netrin-3 OS=Sus scrofa OX=9823 GN=NTN3 PE=4 SV=4 CANONICAL=F1SUI0-1" }, "isoforms": [ { "isoform_ac": "F1SUI0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUI0/entry#F1SUI0-1", "sequence": { "sequence": "MPGWPWGLLLTAGTLSAALSPGPPAPADPCHDEGGAPRGCVPGLVNAALGREVLASSTCGRPATRACDASDPRRAHPAALLTSAGGTASPVCWRSDSLTQVPLNVTLTVPLGKAFELVFVSLRFCSAPPTSVALLKSQDHGRSWAPLGFFSSRCGLDYGRLPAPVDGPAGPGPEALCFPEPQAQPDGGGLLAFSVQDGSPPGLDLDSSPVLQDWVTATDIQVVLTRPTVLGDTRDAAAVVSYSYSATELQVGGRCKCNGHASKCLLDTQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATAREAHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRALSDRRACRACDCHPVGAAGKTCNQTTGQCPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPVPGPTEESNPVEPQDCDLHCKPARGSYRISLKKFCRKDYAVQVAVGARGEARGSWTRFPVAVLAVFRSGEERARRGSSALWVPARDAACGCPRLLPGRHYLLLGGGPGAAVGGGGRGPGLSAARGSLVLPWRDAWTRRLRRLQRRERRGRCGTA", "length": 579, "header": "tr|F1SUI0-1|F1SUI0_PIG Isoform 1 of Netrin-3 OS=Sus scrofa OX=9823 GN=NTN3 PE=4 SV=4 CANONICAL=F1SUI0-1" }, "locus": { "chromosome": "3", "start_pos": 39574971, "end_pos": 39572534, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008826.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008826.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008602.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008602.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 430, "start_aa": "Thr", "end_pos": 430, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr430", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling receptor binding", "id": "GO:0005102", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005102", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "dendrite development", "id": "GO:0016358", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016358", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "pmid": "" }, { "name": "animal organ morphogenesis", "id": "GO:0009887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009887", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "pmid": "" }, { "name": "tissue development", "id": "GO:0009888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009888", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "pmid": "" }, { "name": "motor neuron axon guidance", "id": "GO:0008045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008045", "evidence": [ { "database": "UniProtKB", "id": "F1SUI0", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 387, "end_pos": 389, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUI0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 579, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUI0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUI0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" }, { "id": "PS50027", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50027" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin EGF-like", "eco_id": "ECO_0000259", "start_pos": 374, "end_pos": 423, "start_aa": "Cys", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" }, { "id": "PS51117", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51117" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Laminin N-terminal", "eco_id": "ECO_0000259", "start_pos": 36, "end_pos": 254, "start_aa": "Ala", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUI0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUI0" }, { "id": "PS50189", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50189" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NTR", "eco_id": "ECO_0000259", "start_pos": 441, "end_pos": 576, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 430 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 387, "end_pos": 389 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUJ4-1", "uniprot_ac": "F1SUJ4", "uniprot_id": "F1SUJ4_PIG", "mass": { "chemical_mass": 61940.0, "monoisotopic_mass": 61940.0 }, "refseq": {}, "gene_names": [ { "name": "LRRTM3", "type": "recommended", "evidence": [ { "id": "F1SUJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4" } ] } ], "protein_names": [ { "name": "Leucine rich repeat transmembrane neuronal 3", "type": "synonym", "evidence": [ { "id": "F1SUJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUJ4", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRTM3", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4", "locus": { "chromosome": "14", "start_pos": 70180777, "end_pos": 70172746, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000010232", "url": "https://www.ensembl.org/id/ENSSSCG00000010232" } ] } } ], "crossref": [ { "id": "F1SUJ4", "url": "https://alphafold.ebi.ac.uk/entry/F1SUJ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000010232", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000010232", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF218", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF218", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SUJ4", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUJ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGFNVIRLLSGSAVALVIAPTVLLTMLSSAERGCPKGCRCEGKMVYCESQKLQEIPSSISAGCLGLSLRYNSLQKLKYNQFKGLNQLTWLYLDHNHISNIDENAFNGIRRLKELILSSNRISYFLNNTFRPVTNLRNLDLSYNQLHSLGSEQFRGLRKLLSLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLARNVFAGMIRLKELHLEHNQFSKLNLALFPRLVSLQNLYLQWNKISVIGQTMSWTWSSLQRLDLSGNEIEAFSGPSVFQCVPNLQRLNLDSNKLTFIGQEILDSWISLNDISLAGNIWECSRNICSLVNWLKSFKGLRENTIICASPKELQGVNVIDAVKNYSICGKSTTERFDLARALPKPTFKPKLPRPKHESKPPLPPTVGATEPGPETDADAEHISFHKIIAGSVALFLSVLVILLVIYVSWKRYPASMKQLQQRSLMRRHRKKKRQSLKQMTPSTQEFYVDYKPTNTETSEMLLNGTGPCTYNKSGSRECENRCSKKEKVNGYFYQHFLYSLEAFHLLRGKI", "length": 543, "header": "tr|F1SUJ4-1|F1SUJ4_PIG Isoform 1 of Leucine rich repeat transmembrane neuronal 3 OS=Sus scrofa OX=9823 GN=LRRTM3 PE=3 SV=3 CANONICAL=F1SUJ4-1" }, "isoforms": [ { "isoform_ac": "F1SUJ4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4/entry#F1SUJ4-1", "sequence": { "sequence": "MGFNVIRLLSGSAVALVIAPTVLLTMLSSAERGCPKGCRCEGKMVYCESQKLQEIPSSISAGCLGLSLRYNSLQKLKYNQFKGLNQLTWLYLDHNHISNIDENAFNGIRRLKELILSSNRISYFLNNTFRPVTNLRNLDLSYNQLHSLGSEQFRGLRKLLSLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLARNVFAGMIRLKELHLEHNQFSKLNLALFPRLVSLQNLYLQWNKISVIGQTMSWTWSSLQRLDLSGNEIEAFSGPSVFQCVPNLQRLNLDSNKLTFIGQEILDSWISLNDISLAGNIWECSRNICSLVNWLKSFKGLRENTIICASPKELQGVNVIDAVKNYSICGKSTTERFDLARALPKPTFKPKLPRPKHESKPPLPPTVGATEPGPETDADAEHISFHKIIAGSVALFLSVLVILLVIYVSWKRYPASMKQLQQRSLMRRHRKKKRQSLKQMTPSTQEFYVDYKPTNTETSEMLLNGTGPCTYNKSGSRECENRCSKKEKVNGYFYQHFLYSLEAFHLLRGKI", "length": 543, "header": "tr|F1SUJ4-1|F1SUJ4_PIG Isoform 1 of Leucine rich repeat transmembrane neuronal 3 OS=Sus scrofa OX=9823 GN=LRRTM3 PE=3 SV=3 CANONICAL=F1SUJ4-1" }, "locus": { "chromosome": "14", "start_pos": 70176840, "end_pos": 70173278, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000011198.4", "url": "https://www.ensembl.org/id/ENSSSCT00000011198.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010907.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010907.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 398, "start_aa": "Thr", "end_pos": 398, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr398", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUJ4", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F1SUJ4", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUJ4", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4" } ], "pmid": "" }, { "name": "postsynaptic density membrane", "id": "GO:0098839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098839", "evidence": [ { "database": "UniProtKB", "id": "F1SUJ4", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of presynapse assembly", "id": "GO:1905606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1905606", "evidence": [ { "database": "UniProtKB", "id": "F1SUJ4", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 126, "end_pos": 128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 496, "end_pos": 498, "annotation": "n_glycosylation_sequon" }, { "start_pos": 504, "end_pos": 506, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUJ4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 543, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUJ4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUJ4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUJ4" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 65, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 398 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 126, "end_pos": 128 }, { "start_pos": 357, "end_pos": 359 }, { "start_pos": 496, "end_pos": 498 }, { "start_pos": 504, "end_pos": 506 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUK6-1", "uniprot_ac": "F1SUK6", "uniprot_id": "F1SUK6_PIG", "mass": { "chemical_mass": 78390.0, "monoisotopic_mass": 78390.0 }, "refseq": {}, "gene_names": [ { "name": "CAPN5", "type": "recommended", "evidence": [ { "id": "F1SUK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" } ] } ], "protein_names": [ { "name": "Calpain-5", "type": "recommended", "evidence": [ { "id": "F1SUK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Calcium-regulated non-lysosomal thiol-protease.", "evidence": [ { "database": "UniProtKB", "id": "F1SUK6", "url": "https://www.uniprot.org/uniprotkb/F1SUK6#function" }, { "database": "UniProtKB", "id": "ARBA00002989", "url": "https://www.uniprot.org/uniprotkb/ARBA00002989#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUK6", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAPN5", "url": "https://www.uniprot.org/uniprotkb/F1SUK6", "locus": { "chromosome": "9", "start_pos": 11246711, "end_pos": 11207636, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014875", "url": "https://www.ensembl.org/id/ENSSSCG00000014875" } ] } } ], "crossref": [ { "id": "F1SUK6", "url": "https://alphafold.ebi.ac.uk/entry/F1SUK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014875", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014875", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00044", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00044", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00214", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00214", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04046", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04046", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001300", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001300", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022682", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022682", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022683", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022683", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033883", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033883", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033884", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033884", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10183", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10183", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10183:SF402", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10183:SF402", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00168", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00168", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00648", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00648", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01067", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01067", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1474228", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1474228", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUK6", "url": "https://www.uniprot.org/uniprotkb/F1SUK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUK6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGMRLATFRGLWGRGHTGTRAQEGISSPLPPGAPGAARRCLASASPPGAAATMFSCVKPYEDQNYSALKRACLRRKVLFEDPHFPATDDSLYYKSTPGPTVRWKRPKDICEDPHLFVDGISSHDLHQGQVGNCWFVAACSSLASRESLWQKVIPDWKEQEWDPEKPNAYAGIFHFHFWRFGEWVDVVIDDRLPTVNNQLIYCHSNSRNEFWCALVEKAYAKLAGCYQALDGGNTADALVDFTGGVSEPIDLTEGDFANDEAKRNQLFERMLKVHSRGGLISASIKAVTAADMEARLACGLVKGHAYAVTDVRKVRLGHGLLAFFKSEKLDMIRLRNPWGEREWNGPWSDTSEEWQKVSKSEREKMGVTVQDDGEFWMTFEDVCRYFTDIIQCRLLNTSYLSIHKTWEEARLRGAWTRHEDPLQNRSGGCINHKNTFFQNPQYIFDVKKPEDEVLICIQQRPKQSTRRDGKGENLAIGFDIYKVEENRQYRMHSLQHRAASSIYINSRSVFLRTEQPEGRYVIIPTTFEPGHTGEFLLRVFTDVPSDCRELRLDEPPRSCWSSLCGYPQQVTQVHVLRAAGLKDSPTGADSYVIIKCEGDKVRSAVRRGTSTPEYDVKGVFYRKKPSQPITVQIWNHRVLKDEFLGQVHLKANPDNLQALHTLHLRDRSSQQPSDLPGTVAVCILSSASLTAV", "length": 692, "header": "tr|F1SUK6-1|F1SUK6_PIG Isoform 1 of Calpain-5 OS=Sus scrofa OX=9823 GN=CAPN5 PE=1 SV=3 CANONICAL=F1SUK6-1" }, "isoforms": [ { "isoform_ac": "F1SUK6-1", "url": "https://www.uniprot.org/uniprotkb/F1SUK6/entry#F1SUK6-1", "sequence": { "sequence": "MGMRLATFRGLWGRGHTGTRAQEGISSPLPPGAPGAARRCLASASPPGAAATMFSCVKPYEDQNYSALKRACLRRKVLFEDPHFPATDDSLYYKSTPGPTVRWKRPKDICEDPHLFVDGISSHDLHQGQVGNCWFVAACSSLASRESLWQKVIPDWKEQEWDPEKPNAYAGIFHFHFWRFGEWVDVVIDDRLPTVNNQLIYCHSNSRNEFWCALVEKAYAKLAGCYQALDGGNTADALVDFTGGVSEPIDLTEGDFANDEAKRNQLFERMLKVHSRGGLISASIKAVTAADMEARLACGLVKGHAYAVTDVRKVRLGHGLLAFFKSEKLDMIRLRNPWGEREWNGPWSDTSEEWQKVSKSEREKMGVTVQDDGEFWMTFEDVCRYFTDIIQCRLLNTSYLSIHKTWEEARLRGAWTRHEDPLQNRSGGCINHKNTFFQNPQYIFDVKKPEDEVLICIQQRPKQSTRRDGKGENLAIGFDIYKVEENRQYRMHSLQHRAASSIYINSRSVFLRTEQPEGRYVIIPTTFEPGHTGEFLLRVFTDVPSDCRELRLDEPPRSCWSSLCGYPQQVTQVHVLRAAGLKDSPTGADSYVIIKCEGDKVRSAVRRGTSTPEYDVKGVFYRKKPSQPITVQIWNHRVLKDEFLGQVHLKANPDNLQALHTLHLRDRSSQQPSDLPGTVAVCILSSASLTAV", "length": 692, "header": "tr|F1SUK6-1|F1SUK6_PIG Isoform 1 of Calpain-5 OS=Sus scrofa OX=9823 GN=CAPN5 PE=1 SV=3 CANONICAL=F1SUK6-1" }, "locus": { "chromosome": "9", "start_pos": 11244367, "end_pos": 11207835, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016228.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016228.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015795.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015795.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 100, "start_aa": "Thr", "end_pos": 100, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr100", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUK6", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1474228", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1474228", "resource": "Reactome", "description": "Degradation of the extracellular matrix" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium-dependent cysteine-type endopeptidase activity", "id": "GO:0004198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004198", "evidence": [ { "database": "UniProtKB", "id": "F1SUK6", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SUK6", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SUK6", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F1SUK6", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SUK6", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" }, { "start_pos": 424, "end_pos": 426, "annotation": "n_glycosylation_sequon" }, { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUK6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 692, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUK6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUK6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 551, "end_pos": 666, "start_aa": "Arg", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK6" }, { "id": "PS50203", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50203" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calpain catalytic", "eco_id": "ECO_0000259", "start_pos": 78, "end_pos": 395, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 100 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 396, "end_pos": 398 }, { "start_pos": 424, "end_pos": 426 }, { "start_pos": 64, "end_pos": 66 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUK9-1", "uniprot_ac": "F1SUK9", "uniprot_id": "F1SUK9_PIG", "mass": { "chemical_mass": 19309.0, "monoisotopic_mass": 19309.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ferritin", "type": "recommended", "evidence": [ { "id": "F1SUK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney. Delivery to lysosomes is mediated by the cargo receptor NCOA4 for autophagic degradation and release of iron.", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9#function" }, { "database": "UniProtKB", "id": "ARBA00045964", "url": "https://www.uniprot.org/uniprotkb/ARBA00045964#function" } ] }, { "annotation": "Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9#function" }, { "database": "UniProtKB", "id": "RU361145", "url": "https://www.uniprot.org/uniprotkb/RU361145#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SUK9", "locus": {} } ], "crossref": [ { "id": "F1SUK9", "url": "https://alphafold.ebi.ac.uk/entry/F1SUK9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014872", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014872", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01056", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01056", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009040", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009040", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009078", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009078", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012347", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012347", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11431", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11431", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11431:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11431:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "11148", "url": "https://www.rhea-db.org/rhea/11148", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUK9-1", "url": "https://www.uniprot.org/uniprotkb/F1SUK9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSYRPKATAATTQVHQDSEAAIHCQPNLQLCASSVSLSTSYYFDCDDVALKNFAEYVLHQSREEREHAETLMKLQNQRGGRILLQDIWQPERDDWENGADNGNPSLLALHTLATAKNDPYLCDFVETPHPEEQVKSIPELGDHVTNLHRMGAPKYGLAEYVVDKHTLGSSES", "length": 172, "header": "tr|F1SUK9-1|F1SUK9_PIG Isoform 1 of Ferritin OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SUK9-1" }, "isoforms": [ { "isoform_ac": "F1SUK9-1", "url": "https://www.uniprot.org/uniprotkb/F1SUK9/entry#F1SUK9-1", "sequence": { "sequence": "MSYRPKATAATTQVHQDSEAAIHCQPNLQLCASSVSLSTSYYFDCDDVALKNFAEYVLHQSREEREHAETLMKLQNQRGGRILLQDIWQPERDDWENGADNGNPSLLALHTLATAKNDPYLCDFVETPHPEEQVKSIPELGDHVTNLHRMGAPKYGLAEYVVDKHTLGSSES", "length": 172, "header": "tr|F1SUK9-1|F1SUK9_PIG Isoform 1 of Ferritin OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SUK9-1" }, "locus": { "chromosome": "9", "start_pos": 10956609, "end_pos": 10955814, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016225.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016225.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015792.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015792.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "pmid": "" }, { "name": "autophagosome", "id": "GO:0005776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005776", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular iron ion homeostasis", "id": "GO:0006879", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006879", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "pmid": "" }, { "name": "iron ion transport", "id": "GO:0006826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006826", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "ferrous iron binding", "id": "GO:0008198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008198", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "pmid": "" }, { "name": "ferroxidase activity", "id": "GO:0004322", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004322", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "pmid": "" }, { "name": "ferric iron binding", "id": "GO:0008199", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008199", "evidence": [ { "database": "UniProtKB", "id": "F1SUK9", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "11148", "name": "", "equation": "4 Fe(2+) + O2 + 4 H(+) = 4 Fe(3+) + 2 H2O", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "11148", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/11148" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUK9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 172, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUK9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUK9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" }, { "id": "PS50905", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50905" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ferritin-like diiron", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 151, "start_aa": "Thr", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "F1SUK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK9#function" }, { "id": "F1SUK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" }, { "id": "PIRSR601519-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR601519-1" } ], "binding_site_uniprot": 133, "amino_acid": "Gln", "chebi_lig_id": "CHEBI_24875", "ligand": "Fe cation", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 133, "end_pos": 133, "start_aa": "Gln", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK9#function" }, { "id": "F1SUK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" }, { "id": "PIRSR601519-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR601519-1" } ], "binding_site_uniprot": 64, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_24875", "ligand": "Fe cation", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 64, "end_pos": 64, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK9#function" }, { "id": "F1SUK9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUK9" }, { "id": "PIRSR601519-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR601519-1" } ], "binding_site_uniprot": 67, "amino_acid": "His", "chebi_lig_id": "CHEBI_24875", "ligand": "Fe cation", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 67, "end_pos": 67, "start_aa": "His", "end_aa": "His", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUL2-1", "uniprot_ac": "F1SUL2", "uniprot_id": "F1SUL2_PIG", "mass": { "chemical_mass": 71401.0, "monoisotopic_mass": 71401.0 }, "refseq": { "ac": "XP_003129719", "name": "leucine-rich repeat-containing protein 32", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129719" }, "gene_names": [ { "name": "LRRC32", "type": "recommended", "evidence": [ { "id": "F1SUL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ] }, { "name": "LRRC32", "type": "synonym", "evidence": [ { "id": "XP_003129719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129719" } ] } ], "protein_names": [ { "name": "Transforming growth factor beta activator LRRC32", "type": "recommended", "evidence": [ { "id": "F1SUL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUL2/entry#names_and_taxonomy" } ] }, { "name": "Leucine-rich repeat-containing protein 32", "type": "synonym", "evidence": [ { "id": "F1SUL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUL2/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 32", "type": "synonym", "evidence": [ { "id": "XP_003129719", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129719" } ] } ], "function": [ { "annotation": "Key regulator of transforming growth factor beta (TGFB1, TGFB2 and TGFB3) that controls TGF-beta activation by maintaining it in a latent state during storage in extracellular space. Associates specifically via disulfide bonds with the Latency-associated peptide (LAP), which is the regulatory chain of TGF-beta, and regulates integrin-dependent activation of TGF-beta. Able to outcompete LTBP1 for binding to LAP regulatory chain of TGF-beta. Controls activation of TGF-beta-1 (TGFB1) on the surface of activated regulatory T-cells (Tregs). Required for epithelial fusion during palate development by regulating activation of TGF-beta-3 (TGFB3).", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2#function" }, { "database": "UniProtKB", "id": "ARBA00056059", "url": "https://www.uniprot.org/uniprotkb/ARBA00056059#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC32", "url": "https://www.uniprot.org/uniprotkb/F1SUL2", "locus": { "chromosome": "9", "start_pos": 10802236, "end_pos": 10815563, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014869", "url": "https://www.ensembl.org/id/ENSSSCG00000014869" } ] } } ], "crossref": [ { "id": "F1SUL2", "url": "https://alphafold.ebi.ac.uk/entry/F1SUL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014869", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014869", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100522452", "url": "https://www.ncbi.nlm.nih.gov/gene/100522452", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522452", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522452", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CIRRQKF", "url": "https://omabrowser.org/oma/group/CIRRQKF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SUL2", "url": "https://www.orthodb.org/?gene=F1SUL2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45617", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45617", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45617:SF101", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45617:SF101", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129719", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129719", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUL2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSHQILLLLAMLTLGLASSQHRDKVPCKKVDKEASCQGLGLLQVPSMLARDIEALDLSGNQLRSIPASPLGFYVALRRLDLSANEISSLQPGAFQALPHLEHLNLAHNRLAQGMALGAGGLGPLPHLTALDLSGNSLYSGLAEQLLGEAPALRTLSLAENSLTRLARHTFRGAPALEWLDLHSNVLMDIEDGAFEALPRLAHLNLSRNSLTCISDFRLQQLRVLDLSCNSIEAFQTAPEPPAEYQLAWLDLRENRLLHFPDVTALPRLVYLNVSNNLIRLPEGPPQGGEGIHAPSEGWAALPASNPGRNASTPPLSQLLNLDLSYNEIELVPEGFLEHLTSLRFLNLSRNCLQAFRAWGAGSLPCLMRLDISHNALEKLELGAGALGSLRTLLLQDNALWDLPPYAFASLASLQRLNLQGNRISPCGGPGEPGPSGCVAFSGISSLRFLNLVDNKVETLRAGAFLHTPLTELDLSANPGLDVATGALAGLEGSLEVLALQGNGLATLQVDLPCFSCLKRLNLAENRLSRLPAWTQAVSLEVLDLRNNSFSLLPGSAMGGLETSLRRLYLQGNPLSCCGNGWLAAQLHQGRVDVDATQDLTCHFGSQEAVSLSHVRPEDCEKGGLKNVNLVIILTFALVAAVLLTTLATCCCVRRQKFSQQYKA", "length": 663, "header": "tr|F1SUL2-1|F1SUL2_PIG Isoform 1 of Transforming growth factor beta activator LRRC32 OS=Sus scrofa OX=9823 GN=LRRC32 PE=3 SV=2 CANONICAL=F1SUL2-1" }, "isoforms": [ { "isoform_ac": "F1SUL2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUL2/entry#F1SUL2-1", "sequence": { "sequence": "MSHQILLLLAMLTLGLASSQHRDKVPCKKVDKEASCQGLGLLQVPSMLARDIEALDLSGNQLRSIPASPLGFYVALRRLDLSANEISSLQPGAFQALPHLEHLNLAHNRLAQGMALGAGGLGPLPHLTALDLSGNSLYSGLAEQLLGEAPALRTLSLAENSLTRLARHTFRGAPALEWLDLHSNVLMDIEDGAFEALPRLAHLNLSRNSLTCISDFRLQQLRVLDLSCNSIEAFQTAPEPPAEYQLAWLDLRENRLLHFPDVTALPRLVYLNVSNNLIRLPEGPPQGGEGIHAPSEGWAALPASNPGRNASTPPLSQLLNLDLSYNEIELVPEGFLEHLTSLRFLNLSRNCLQAFRAWGAGSLPCLMRLDISHNALEKLELGAGALGSLRTLLLQDNALWDLPPYAFASLASLQRLNLQGNRISPCGGPGEPGPSGCVAFSGISSLRFLNLVDNKVETLRAGAFLHTPLTELDLSANPGLDVATGALAGLEGSLEVLALQGNGLATLQVDLPCFSCLKRLNLAENRLSRLPAWTQAVSLEVLDLRNNSFSLLPGSAMGGLETSLRRLYLQGNPLSCCGNGWLAAQLHQGRVDVDATQDLTCHFGSQEAVSLSHVRPEDCEKGGLKNVNLVIILTFALVAAVLLTTLATCCCVRRQKFSQQYKA", "length": 663, "header": "tr|F1SUL2-1|F1SUL2_PIG Isoform 1 of Transforming growth factor beta activator LRRC32 OS=Sus scrofa OX=9823 GN=LRRC32 PE=3 SV=2 CANONICAL=F1SUL2-1" }, "locus": { "chromosome": "9", "start_pos": 10810849, "end_pos": 10804318, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016222.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016222.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015789.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015789.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522452", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522452", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0X8W1-1", "protein_name": "Leucine rich repeat containing 32", "gene_name": "LRRC32", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLYVIFLLSVVNGHQPAEGMPCEMANLQAFCHNKELRQIPRELHPNVNKIDLSGNLIQSIPDMPLPFYTSLQCLDLSSNQISFITPGVFAHMTSLLEINLANNNLYELAQTGTEGIGFLPKVEILDLSHNSLYNGMAEYFIKRAPALRYLSLAGNSIIMISHKMFQGSPNLVEIDLQSNIIMEIEEGAFETLLNLSRLNLSMNSITCISDFNLRQLEILDLSRNSIESFHTTESDDEYSLKCLDLSENKLLRFPVFPQVNKLVTLNLSKNLIQLTAESSRNKMNYMENEWLDAPFHLLDQKQSRNKSSLNLSHLAYLDLSYNEIKSIPDEFFESMFSLHTLNLSKNCLQTFEVTSDSTLVSLTVLDLSYNALQSLLLHADTLLNLKELYIQNNHLQVLQFDIFSRLTSLRWLNLQSNNITLCSMYSGLAKQRLAGEENGCISFVDAPALQHLSLADNMLSILPAHTFFKTSLIFLDLSMNPGLTVEVNALSGLEQSLEYLHLHGNSLIELNIDLPCFSHLRHLNLSENQLSWLPKWGSGSPLEVLDLRNNRFSTLQNSNILALENSLKNLYLTGNPLNCCGNMWLSLMIQNKNVQISNVEHLTCQYTQNFGYQEEMHIGNIRPEDCEKEDLKKINFLIILTVVLVLSVIIIGVGSFFCFRRQNFSQQFKA", "length": 671 }, "evidence": [ { "id": "F1SUL2", "url": "https://omabrowser.org/oma/group/F1SUL2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D3ZVD5-1", "protein_name": "Transforming growth factor beta activator LRRC32", "gene_name": "Lrrc32", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSYQILILLAMLTLGLAISQRRDQVPCRTVNKEALCHGLSLLQVPSVLSLDIQALYLSGNRLQSILVSPLSFYTALRHLDLSDNEISFLQPGVFQALPYLEHLNLAHNRLAAGMALNSGGLGRLPLVVSLDLSGNSLHGSLVERLLGEAPRLRTLSLAENSLTRLARHTFWGMPAMEQLDLHSNVLMDIEDGAFEALPQLTHLNLSRNSLTCISDFSLQQLQVLDLSCNSIETFQTAPESQAQFQLAWLDLRENKLLHFPDLAMFPRLIYLNVSNNLIQLPTGLPQDSEDLHAPSEGWSASLLSNPSRNASIHPLSQLLNLDLSYNEIELVPAGFLEHLTSLRFLNLSRNCLRSFEARRAGSLPCLVLLDLSHNVLEALELGTKVLGSLKTLLLQDNTLRELPPYTFAGLASLQRLNLQGNQVSPCGGQAEPGPPGCVDFSGIPTLHFLNMAGNSMETLRAGSFLHTPLTELDLSANPGLDVATGALVGLEASLEVLELQGNGLVVLRVDLPCFRRLKRLNLAENRLSHLPAWTRAVSLEVLDLRNNSFSLLPGNAMGGLETSLRRLYLQGNPLSCCGNGWLAAQLHQGRVDVDATQDLICRFGSQEEVSLSLVRPEDCEKGGLKNVNLIIILSFTLVSAIVLTTLATCCFLRRQKLSQQYKA", "length": 663 }, "evidence": [ { "id": "F1SUL2", "url": "https://omabrowser.org/oma/group/F1SUL2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BAW2-1", "protein_name": "Transforming growth factor beta activator LRRC32", "gene_name": "LRRC32", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSHQILLLLAVLTLGLATSQHRDKVPCRKVDKEVWCQGRGLLQVPSVLSRDIEVLNLSRNQLRSILALPLGFYTALRHLDLSANEISFLQPGVFQALPHLEHLNLAHNHLAVGTALNTGGLGPLLHLTSLDLSGNSLYSGLVEQLLGEAPALRTLSLAENSLTRLGRRTFLSTPALERLDLHSNVLMDIEDGAFEALPRLVHLNLSRNSLTCISDFSLQQLRVLDLSCNSIEAFQTAEPRAEYQLAWLDLRENKLLHFPDLSALPRLIYLNASNNLIRLPAEPPRGGAEGLHAPSEGWSSLPLSNPSRNTSTQPLSQLLNLDLSYNEIELVPEGFLEPLTSLRSLNLSRNCLRAFEAQPGSLPCLTLLDISHNALETLELGARALGSLRTLLLQDNALRDLPLYTFTSLASLQRLNLQGNRLSPCGGPAEPGPSGCVAFSGISSLRVLNLADNEMEILQAGAFLHTPLAELDLSSNPGLDVAPGALAGLEGSLEVLALQGNGLAVLQVDLPCFSCLKRLNLAENRLSRLPAWTQAVSLEVLDLRNNSFSLLPGSAMGGLENSLRRLYLQGNPLSCCGNGWLAAQLHQGRVDVDATQDLICRFGSQEEVSLSHVRPEDCEKGGLKNINLIIILTFAVVSAILLTTLATCCCVRRQKFSQQYKA", "length": 662 }, "evidence": [ { "id": "F1SUL2", "url": "https://omabrowser.org/oma/group/F1SUL2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7FFN8-1", "protein_name": "Transforming growth factor beta activator LRRC32", "gene_name": "lrrc32", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGTCLWILMLMVSQVSPYRRPAEDSPCRVHQDDVDCSSLSLRRVPAPLPSSIRLLDLSQNLLQNLTLQDLPSRSSLRRLDLHHNQIQFLQPGLFRDLLHLEDLDLSGNALDLYAALHTPLGPLPALRRLDLSGNGLFTDMSDYFLSDAPALTNLSLDGNSITKISRTTFNGSQALQNIDLHNNVIIEIEEGAFEFLTELSELDLSVNSISCITDFNLVQLRTLNLSRNSLTNFQSLDMEDEFQLQHLDLRENKLLYFPVLPQRNRLMYLDLSRNLLRSVNCSGPLEELESLRESGYLLTAHDKPLTLCANERQQELGRLLYLDLSFNQLKTLSSSFFSSMAALESLNISNNCLQSFSVDSLRSLKTLDLSFNNLQNLSFSGGALPALEVLLLQGNALHLLDAHIFSSLPSIRSLHLQQNLLSICADPQISSGCVHLSDIPSLTYLYLSENSLSSIPDGAFKGSPLLILDLSLNPGVDITAASLSGVETSLTHLSLRGNQLHSLSIDFRVFQKLRSLDVSVNRLSGVSPWSEDSSVEILNLQNNRVEALGSALLQGRLRTLYVGWNPLSCCRNPQLLDLLQQERLHVPDLAAATCWYSGDVEQVEVSVSAALPELCSSADSRVLWVSLMVALALGLALVLTVSLKLCHSRKHRFKRGFKA", "length": 659 }, "evidence": [ { "id": "F1SUL2", "url": "https://omabrowser.org/oma/group/F1SUL2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3XA59-1", "protein_name": "Transforming growth factor beta activator LRRC32", "gene_name": "Lrrc32", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSHQILLLLAMLTLGLAISQRREQVPCRTVNKEALCHGLGLLQVPSVLSLDIQALYLSGNQLQSILVSPLGFYTALRHLDLSDNQISFLQAGVFQALPYLEHLNLAHNRLATGMALNSGGLGRLPLLVSLDLSGNSLHGNLVERLLGETPRLRTLSLAENSLTRLARHTFWGMPAVEQLDLHSNVLMDIEDGAFEALPHLTHLNLSRNSLTCISDFSLQQLQVLDLSCNSIEAFQTAPEPQAQFQLAWLDLRENKLLHFPDLAVFPRLIYLNVSNNLIQLPAGLPRGSEDLHAPSEGWSASPLSNPSRNASTHPLSQLLNLDLSYNEIELVPASFLEHLTSLRFLNLSRNCLRSFEARQVDSLPCLVLLDLSHNVLEALELGTKVLGSLQTLLLQDNALQELPPYTFASLASLQRLNLQGNQVSPCGGPAEPGPPGCVDFSGIPTLHVLNMAGNSMGMLRAGSFLHTPLTELDLSTNPGLDVATGALVGLEASLEVLELQGNGLTVLRVDLPCFLRLKRLNLAENQLSHLPAWTRAVSLEVLDLRNNSFSLLPGNAMGGLETSLRRLYLQGNPLSCCGNGWLAAQLHQGRVDVDATQDLICRFGSQEELSLSLVRPEDCEKGGLKNVNLILLLSFTLVSAIVLTTLATICFLRRQKLSQQYKA", "length": 663 }, "evidence": [ { "id": "F1SUL2", "url": "https://omabrowser.org/oma/group/F1SUL2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q14392-1", "protein_name": "Transforming growth factor beta activator LRRC32", "gene_name": "LRRC32", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPQILLLLALLTLGLAAQHQDKVPCKMVDKKVSCQVLGLLQVPSVLPPDTETLDLSGNQLRSILASPLGFYTALRHLDLSTNEISFLQPGAFQALTHLEHLSLAHNRLAMATALSAGGLGPLPRVTSLDLSGNSLYSGLLERLLGEAPSLHTLSLAENSLTRLTRHTFRDMPALEQLDLHSNVLMDIEDGAFEGLPRLTHLNLSRNSLTCISDFSLQQLRVLDLSCNSIEAFQTASQPQAEFQLTWLDLRENKLLHFPDLAALPRLIYLNLSNNLIRLPTGPPQDSKGIHAPSEGWSALPLSAPSGNASGRPLSQLLNLDLSYNEIELIPDSFLEHLTSLCFLNLSRNCLRTFEARRLGSLPCLMLLDLSHNALETLELGARALGSLRTLLLQGNALRDLPPYTFANLASLQRLNLQGNRVSPCGGPDEPGPSGCVAFSGITSLRSLSLVDNEIELLRAGAFLHTPLTELDLSSNPGLEVATGALGGLEASLEVLALQGNGLMVLQVDLPCFICLKRLNLAENRLSHLPAWTQAVSLEVLDLRNNSFSLLPGSAMGGLETSLRRLYLQGNPLSCCGNGWLAAQLHQGRVDVDATQDLICRFSSQEEVSLSHVRPEDCEKGGLKNINLIIILTFILVSAILLTTLAACCCVRRQKFNQQYKA", "length": 662 }, "evidence": [ { "id": "F1SUL2", "url": "https://omabrowser.org/oma/group/F1SUL2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "transforming growth factor beta receptor signaling pathway", "id": "GO:0007179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007179", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "pmid": "" }, { "name": "secondary palate development", "id": "GO:0062009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0062009", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "pmid": "" }, { "name": "establishment of protein localization to extracellular region", "id": "GO:0035592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035592", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transforming growth factor beta binding", "id": "GO:0050431", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050431", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "pmid": "" }, { "name": "receptor ligand inhibitor activity", "id": "GO:0141069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0141069", "evidence": [ { "database": "UniProtKB", "id": "F1SUL2", "url": "https://www.uniprot.org/uniprotkb/F1SUL2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 346, "end_pos": 348, "annotation": "n_glycosylation_sequon" }, { "start_pos": 546, "end_pos": 548, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUL2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 663, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUL2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUL2" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 204, "end_pos": 206 }, { "start_pos": 272, "end_pos": 274 }, { "start_pos": 309, "end_pos": 311 }, { "start_pos": 346, "end_pos": 348 }, { "start_pos": 546, "end_pos": 548 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUN3-1", "uniprot_ac": "F1SUN3", "uniprot_id": "F1SUN3_PIG", "mass": { "chemical_mass": 30802.0, "monoisotopic_mass": 30802.0 }, "refseq": { "ac": "XP_003127717", "name": "UBX domain-containing protein 10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127717" }, "gene_names": [ { "name": "UBXN10", "type": "recommended", "evidence": [ { "id": "F1SUN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" } ] }, { "name": "UBXN10", "type": "synonym", "evidence": [ { "id": "XP_003127717", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127717" } ] } ], "protein_names": [ { "name": "UBX domain protein 10", "type": "synonym", "evidence": [ { "id": "F1SUN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUN3/entry#names_and_taxonomy" } ] }, { "name": "UBX domain-containing protein 10", "type": "synonym", "evidence": [ { "id": "XP_003127717", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127717" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUN3", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UBXN10", "url": "https://www.uniprot.org/uniprotkb/F1SUN3", "locus": { "chromosome": "6", "start_pos": 78465771, "end_pos": 78456983, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003498", "url": "https://www.ensembl.org/id/ENSSSCG00000003498" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003498", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003498", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd17076", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17076", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514294", "url": "https://www.ncbi.nlm.nih.gov/gene/100514294", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514294", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514294", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ADSFIWQ", "url": "https://omabrowser.org/oma/group/ADSFIWQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SUN3", "url": "https://www.orthodb.org/?gene=F1SUN3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF00789", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00789", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127717", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SUN3", "url": "https://www.uniprot.org/uniprotkb/F1SUN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SUN3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEVCSSRAPSPPPAIPCESPSSQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSIKRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKKQSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCSIETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP", "length": 280, "header": "tr|F1SUN3-1|F1SUN3_PIG Isoform 1 of UBX domain protein 10 OS=Sus scrofa OX=9823 GN=UBXN10 PE=4 SV=1 CANONICAL=F1SUN3-1" }, "isoforms": [ { "isoform_ac": "F1SUN3-1", "url": "https://www.uniprot.org/uniprotkb/F1SUN3/entry#F1SUN3-1", "sequence": { "sequence": "MATEAPVNIAPPECSTAVSTAVDGFLWQRDSLNMHVIRPKSAKGRTRPSLPRPQGPEVCSSRAPSPPPAIPCESPSSQKPGACTPKSPNQWAPDEIPELLQQMPIGSSSSLNKYPVLPSIKRKSLAQGALETTSKKTSALQRSSLQGLYPKETGTLRMSGEDARARPCSLERKFVMQPKKQSSYGAGDLEEPSDQEPRLLLAVRSPSGRRFVRHFRPTDDLQTVVTVAEHKNKATYRHCSIETMEVPRRRFSDLTKSLQECGIAHRSALGIAREDREGWP", "length": 280, "header": "tr|F1SUN3-1|F1SUN3_PIG Isoform 1 of UBX domain protein 10 OS=Sus scrofa OX=9823 GN=UBXN10 PE=4 SV=1 CANONICAL=F1SUN3-1" }, "locus": { "chromosome": "6", "start_pos": 78463729, "end_pos": 78462890, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003886.4", "url": "https://www.ensembl.org/id/ENSSSCT00000003886.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003798.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003798.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUN3", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514294", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514294", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0ZLZ1-1", "protein_name": "UBX domain protein 10", "gene_name": "UBXN10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRSSSNMLPRAGGSPAGRDMGTECHQHGPSPSPQNHPEHCREMAKPMDKRRSKPVSWEAMATAALLNPVPLCCYFPSSTAVSVFQPNAITMHMTRPKSAKGRTRSTFNCSGTTGAYPCAVPSSPAAPHDLQSSRRAPPMKTVFPPGQISPEEIPELLQQVPLRSSSSLNKYRVLPSIGRKGVEGAAEQSGHPDVSWGREDDPKTAAPSGDQGSACRPPESHVPNEEALCAPEKLGRKMRQEGPLLSTLSLEEPLQKESRLLLAIRSPSGQRFEHHFKPTDSLQMVLAIAEHQTATKYERCSIETTEVPRRSFCDLNRSLQECGIPHKSVLCIRQAEQQDLQDTDL", "length": 345 }, "evidence": [ { "id": "F1SUN3", "url": "https://omabrowser.org/oma/group/F1SUN3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BA51-1", "protein_name": "UBX domain protein 10", "gene_name": "UBXN10", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATEAPVNIAPPECSPVGSTATDSFPWQPDSLNMHVTRPKSAKGRTRPRLHKRLGMEGCSGRAPASLPPAIPCESPSSHKPGACTPGSPDQGAPGEIPELLQQAPFGVSSSLNKYPVLPSINRRTLEEGALETVAKKAGSLQLSSAQALSQEEACTMKMGEKDPQAQTCSPERRVLVRTERQTSSRVGDLEEPSDQEPRLLLAIRSPSGRRFVRHFRPADALQTVVAVAEHKNKAAYRHCSIETMGVPRRRFSDLSKSLQDCGIPNKSVLGISQEEGEGWS", "length": 281 }, "evidence": [ { "id": "F1SUN3", "url": "https://omabrowser.org/oma/group/F1SUN3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3V606-1", "protein_name": "UBX domain-containing protein 10", "gene_name": "Ubxn10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEAPVNFAPPEHSTVVSTAADSYTWQPSSLRMHVIRPKSAKGRKRPNLHLPQGIGDGSHSGLTSSSPPRSSGSPSNQKREVCATAPASQGAPDEMPELLQQAPIRTASSLNRYPVLPSINRRSSEDGAVDTVSSKTSSLQLSSVQALYQEEARAAVKSSQEDSRTQVCALEKKFIIRTKRQSSSRASNMEEPSDEEPRLLLAVRSPSGQRFVRYFRPSDDLQTVLEVAEQKNKATYQHCIVETMEVPRRRFSDLTKSLQECGILHKSVLGISQEEGEGWP", "length": 282 }, "evidence": [ { "id": "F1SUN3", "url": "https://omabrowser.org/oma/group/F1SUN3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0P3Z8-1", "protein_name": "UBX domain-containing protein 10", "gene_name": "ubxn10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MHVTRPKSSKGRSRPMITNSSMIYTPSQPSALSPQPPAAAKTKDKSNQSLRSRAILRRSSQPTTDILTEAYDRPPEEPVSLNRYRVLPSIEKKTSTDNQKCSQCVSRHRKCQHTNARLDVVSDSTPPEESDLLLAIRTPCGQRFKRSFRPSDQLKGVLSAAEAEFGDRFDNCIIETMDVPRRTFSNLTMTLAQCGVLNKSVLCISHDDSEMDLT", "length": 214 }, "evidence": [ { "id": "F1SUN3", "url": "https://omabrowser.org/oma/group/F1SUN3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BG34-1", "protein_name": "UBX domain-containing protein 10", "gene_name": "Ubxn10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIEAPVNFAPPERSTVVSTAGDSSTWQPSSLRMHVIRPKSAKGRKRPNLHRPQGMGDGSPSALSSSPPPRSSGSPSNQKPGVCATVSTSQGAPDEMPELLLQQAPTRTASSLNRYPVLPSINRRSLEVGAVDTVASKTSSLQLSSVQALYQEDSSQEDSRTQVCALEKKFIIRTKRQSSSRASNIEEPSDEEPRLLLAVRSPSGQRFVRYFRPSDDLQTVLEVAEQKNKATYQHCSIETMEVPRRRFSDLTKSLQECGILHKSVLGISQEEGEAWP", "length": 277 }, "evidence": [ { "id": "F1SUN3", "url": "https://omabrowser.org/oma/group/F1SUN3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96LJ8-1", "protein_name": "UBX domain-containing protein 10", "gene_name": "UBXN10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCAHHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSINRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKKQGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCSIETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP", "length": 280 }, "evidence": [ { "id": "F1SUN3", "url": "https://omabrowser.org/oma/group/F1SUN3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SUN3", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "F1SUN3", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" } ], "pmid": "" }, { "name": "intraciliary transport particle B", "id": "GO:0030992", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030992", "evidence": [ { "database": "UniProtKB", "id": "F1SUN3", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SUN3", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" } ], "pmid": "" }, { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "F1SUN3", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ubiquitin binding", "id": "GO:0043130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043130", "evidence": [ { "database": "UniProtKB", "id": "F1SUN3", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUN3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUN3" }, { "id": "PS50033", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50033" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UBX", "eco_id": "ECO_0000259", "start_pos": 194, "end_pos": 271, "start_aa": "Asp", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUP0-1", "uniprot_ac": "F1SUP0", "uniprot_id": "F1SUP0_PIG", "mass": { "chemical_mass": 29677.0, "monoisotopic_mass": 29677.0 }, "refseq": {}, "gene_names": [ { "name": "SLC66A1", "type": "recommended", "evidence": [ { "id": "F1SUP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP0" } ] } ], "protein_names": [ { "name": "Lysosomal amino acid transporter 1 homolog", "type": "recommended", "evidence": [ { "id": "F1SUP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP0/entry#names_and_taxonomy" } ] }, { "name": "PQ-loop repeat-containing protein 2", "type": "synonym", "evidence": [ { "id": "F1SUP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP0/entry#names_and_taxonomy" } ] }, { "name": "Solute carrier family 66 member 1", "type": "synonym", "evidence": [ { "id": "F1SUP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Amino acid transporter that specifically mediates the pH-dependent export of the cationic amino acids arginine, histidine and lysine from lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0#function" }, { "database": "UniProtKB", "id": "ARBA00056009", "url": "https://www.uniprot.org/uniprotkb/ARBA00056009#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SLC66A1", "url": "https://www.uniprot.org/uniprotkb/F1SUP0", "locus": { "chromosome": "6", "start_pos": 77778571, "end_pos": 77761782, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003492", "url": "https://www.ensembl.org/id/ENSSSCG00000003492" } ] } } ], "crossref": [ { "id": "F1SUP0", "url": "https://alphafold.ebi.ac.uk/entry/F1SUP0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003492", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003492", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR006603", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006603", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051415", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051415", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16201", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16201", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16201:SF36", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16201:SF36", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04193", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04193", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5223345", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5223345", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUP0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRVWRVCPGWLGRGQRGPGLDLHPLLAASTFPQYIKACKTGNMDQAVSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADVVMLSLYFHYKFKKRPSPWSAHINSMLLFIVGMTCVTPLLSSSGAGAAPREVFRGRTLLSVEPGSKPFTRQEIIGFVIGSVSSVLYLFSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPEVGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLIYRDAATSSERQPLLPS", "length": 269, "header": "tr|F1SUP0-1|F1SUP0_PIG Isoform 1 of Lysosomal amino acid transporter 1 homolog OS=Sus scrofa OX=9823 GN=SLC66A1 PE=3 SV=3 CANONICAL=F1SUP0-1" }, "isoforms": [ { "isoform_ac": "F1SUP0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUP0/entry#F1SUP0-1", "sequence": { "sequence": "MGRVWRVCPGWLGRGQRGPGLDLHPLLAASTFPQYIKACKTGNMDQAVSLWFLLGWIGGDSCNLIGSFLADQLPLQTYTAVYYVLADVVMLSLYFHYKFKKRPSPWSAHINSMLLFIVGMTCVTPLLSSSGAGAAPREVFRGRTLLSVEPGSKPFTRQEIIGFVIGSVSSVLYLFSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPEVGQSEGSYLLHHLPWLVGSLGVLLLDTIISIQFLIYRDAATSSERQPLLPS", "length": 269, "header": "tr|F1SUP0-1|F1SUP0_PIG Isoform 1 of Lysosomal amino acid transporter 1 homolog OS=Sus scrofa OX=9823 GN=SLC66A1 PE=3 SV=3 CANONICAL=F1SUP0-1" }, "locus": { "chromosome": "6", "start_pos": 77777738, "end_pos": 77767435, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003879.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003879.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003791.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003791.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-5223345", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5223345", "resource": "Reactome", "description": "Miscellaneous transport and binding events" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "L-lysine transmembrane transporter activity", "id": "GO:0015189", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015189", "evidence": [ { "database": "UniProtKB", "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0" } ], "pmid": "" }, { "name": "L-histidine transmembrane transporter activity", "id": "GO:0005290", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005290", "evidence": [ { "database": "UniProtKB", "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0" } ], "pmid": "" }, { "name": "L-arginine transmembrane transporter activity", "id": "GO:0061459", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061459", "evidence": [ { "database": "UniProtKB", "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "lysine transport", "id": "GO:0015819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015819", "evidence": [ { "database": "UniProtKB", "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0" } ], "pmid": "" }, { "name": "intracellular amino acid homeostasis", "id": "GO:0080144", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0080144", "evidence": [ { "database": "UniProtKB", "id": "F1SUP0", "url": "https://www.uniprot.org/uniprotkb/F1SUP0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUP0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 269, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUP0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUP0" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUP4-1", "uniprot_ac": "F1SUP4", "uniprot_id": "F1SUP4_PIG", "mass": { "chemical_mass": 35094.0, "monoisotopic_mass": 35094.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "F1SUP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SUP4", "url": "https://www.uniprot.org/uniprotkb/F1SUP4#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUP4", "url": "https://www.uniprot.org/uniprotkb/F1SUP4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F1SUP4", "locus": {} } ], "crossref": [ { "id": "F1SUP4", "url": "https://alphafold.ebi.ac.uk/entry/F1SUP4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13954", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13954", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24242:SF253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24242:SF253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SUP4", "url": "https://www.uniprot.org/uniprotkb/F1SUP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESTCNGSKDSSPVFYLVGIPSLPETLFFLVFLLFLLIYLLILVGNALILVAVGTEPRLHKPMYFFLINLSALDILSTTTTLPKMLSLLLLGDHVFSFPACFLQMYLFHGLNCSEAFILVVMAYDRYVAICRPLHYPVHMTPQTNAALAASAWLAALLLPIPAVVKTSQMAYDNIARIYHCFCDHLALVQASCSDTTPQTLLGFCIAMVVSFLPLLLVLLSYAHIVASVLRISSREGRSKAFSTCTSHLLVVGTYYSSIAIAYVAYRADLPLDFHIVGNVVFAILTPVLNPLIYTLRNKDVKAAITKIACRQDPECDD", "length": 318, "header": "tr|F1SUP4-1|F1SUP4_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SUP4-1" }, "isoforms": [ { "isoform_ac": "F1SUP4-1", "url": "https://www.uniprot.org/uniprotkb/F1SUP4/entry#F1SUP4-1", "sequence": { "sequence": "MESTCNGSKDSSPVFYLVGIPSLPETLFFLVFLLFLLIYLLILVGNALILVAVGTEPRLHKPMYFFLINLSALDILSTTTTLPKMLSLLLLGDHVFSFPACFLQMYLFHGLNCSEAFILVVMAYDRYVAICRPLHYPVHMTPQTNAALAASAWLAALLLPIPAVVKTSQMAYDNIARIYHCFCDHLALVQASCSDTTPQTLLGFCIAMVVSFLPLLLVLLSYAHIVASVLRISSREGRSKAFSTCTSHLLVVGTYYSSIAIAYVAYRADLPLDFHIVGNVVFAILTPVLNPLIYTLRNKDVKAAITKIACRQDPECDD", "length": 318, "header": "tr|F1SUP4-1|F1SUP4_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN= PE=3 SV=4 CANONICAL=F1SUP4-1" }, "locus": { "chromosome": "9", "start_pos": 9409148, "end_pos": 9407672, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016200.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016200.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015767.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015767.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUP4", "url": "https://www.uniprot.org/uniprotkb/F1SUP4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SUP4", "url": "https://www.uniprot.org/uniprotkb/F1SUP4" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SUP4", "url": "https://www.uniprot.org/uniprotkb/F1SUP4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUP4", "url": "https://www.uniprot.org/uniprotkb/F1SUP4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SUP4", "url": "https://www.uniprot.org/uniprotkb/F1SUP4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUP4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 318, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUP4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUP4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP4" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 45, "end_pos": 294, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 112, "end_pos": 114 }, { "start_pos": 69, "end_pos": 71 }, { "start_pos": 6, "end_pos": 8 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUP5-1", "uniprot_ac": "F1SUP5", "uniprot_id": "F1SUP5_PIG", "mass": { "chemical_mass": 21445.0, "monoisotopic_mass": 21445.0 }, "refseq": {}, "gene_names": [ { "name": "OR2AT4", "type": "recommended", "evidence": [ { "id": "F1SUP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP5" } ] } ], "protein_names": [ { "name": "Olfactory receptor family 2 subfamily AT member 4", "type": "synonym", "evidence": [ { "id": "F1SUP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "F1SUP5", "url": "https://www.uniprot.org/uniprotkb/F1SUP5#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUP5", "url": "https://www.uniprot.org/uniprotkb/F1SUP5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OR2AT4", "url": "https://www.uniprot.org/uniprotkb/F1SUP5", "locus": { "chromosome": "9", "start_pos": 9388097, "end_pos": 9389009, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023029", "url": "https://www.ensembl.org/id/ENSSSCG00000023029" } ] } } ], "crossref": [ { "id": "F1SUP5", "url": "https://alphafold.ebi.ac.uk/entry/F1SUP5", "database": "AlphaFoldDB", "categories": [] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24242:SF253", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24242:SF253", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SUP5", "url": "https://www.uniprot.org/uniprotkb/F1SUP5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUP5-1", "url": "https://www.uniprot.org/uniprotkb/F1SUP5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYLFQSFTCSEAFILVVMAYDRYVAICRPLHYPVHMTPQTNAALAASAWLAALLLPIPAVVKTSQMAYDNIARIYHCFCDHLAVVQASCSDTTPQTLLGFCIAMVVSFLPLLLVLLSYAHIVASVLRISSREGRSKAFSTCTSHLLVVGTYYSSIAIAYVAYRADLPLDFHIVGNVVYAILTPDVKAAITKIASVM", "length": 196, "header": "tr|F1SUP5-1|F1SUP5_PIG Isoform 1 of Olfactory receptor family 2 subfamily AT member 4 OS=Sus scrofa OX=9823 GN=OR2AT4 PE=3 SV=4 CANONICAL=F1SUP5-1" }, "isoforms": [ { "isoform_ac": "F1SUP5-1", "url": "https://www.uniprot.org/uniprotkb/F1SUP5/entry#F1SUP5-1", "sequence": { "sequence": "MYLFQSFTCSEAFILVVMAYDRYVAICRPLHYPVHMTPQTNAALAASAWLAALLLPIPAVVKTSQMAYDNIARIYHCFCDHLAVVQASCSDTTPQTLLGFCIAMVVSFLPLLLVLLSYAHIVASVLRISSREGRSKAFSTCTSHLLVVGTYYSSIAIAYVAYRADLPLDFHIVGNVVYAILTPDVKAAITKIASVM", "length": 196, "header": "tr|F1SUP5-1|F1SUP5_PIG Isoform 1 of Olfactory receptor family 2 subfamily AT member 4 OS=Sus scrofa OX=9823 GN=OR2AT4 PE=3 SV=4 CANONICAL=F1SUP5-1" }, "locus": { "chromosome": "9", "start_pos": 9389009, "end_pos": 9388100, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016199.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016199.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015766.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015766.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUP5", "url": "https://www.uniprot.org/uniprotkb/F1SUP5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "F1SUP5", "url": "https://www.uniprot.org/uniprotkb/F1SUP5" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "F1SUP5", "url": "https://www.uniprot.org/uniprotkb/F1SUP5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SUP5", "url": "https://www.uniprot.org/uniprotkb/F1SUP5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F1SUP5", "url": "https://www.uniprot.org/uniprotkb/F1SUP5" } ], "pmid": "" }, { "name": "positive regulation of ERK1 and ERK2 cascade", "id": "GO:0070374", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070374", "evidence": [ { "database": "UniProtKB", "id": "F1SUP5", "url": "https://www.uniprot.org/uniprotkb/F1SUP5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUP5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 196, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUP5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUP5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUP5" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 160, "start_aa": "Met", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUV0-1", "uniprot_ac": "F1SUV0", "uniprot_id": "F1SUV0_PIG", "mass": { "chemical_mass": 70870.0, "monoisotopic_mass": 70870.0 }, "refseq": {}, "gene_names": [ { "name": "ATG16L2", "type": "recommended", "evidence": [ { "id": "F1SUV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" } ] } ], "protein_names": [ { "name": "Protein Atg16l2", "type": "recommended", "evidence": [ { "id": "F1SUV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUV0/entry#names_and_taxonomy" } ] }, { "name": "APG16-like 2", "type": "synonym", "evidence": [ { "id": "F1SUV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUV0/entry#names_and_taxonomy" } ] }, { "name": "Autophagy-related protein 16-2", "type": "synonym", "evidence": [ { "id": "F1SUV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUV0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "May play a role in regulating epithelial homeostasis in an ATG16L1-dependent manner.", "evidence": [ { "database": "UniProtKB", "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0#function" }, { "database": "UniProtKB", "id": "ARBA00053879", "url": "https://www.uniprot.org/uniprotkb/ARBA00053879#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ATG16L2", "url": "https://www.uniprot.org/uniprotkb/F1SUV0", "locus": { "chromosome": "9", "start_pos": 7365625, "end_pos": 7347002, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014819", "url": "https://www.ensembl.org/id/ENSSSCG00000014819" } ] } } ], "crossref": [ { "id": "F1SUV0", "url": "https://alphafold.ebi.ac.uk/entry/F1SUV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014819", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014819", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22887", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22887", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013923", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013923", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19878", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19878", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19878:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19878:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08614", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08614", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1632852", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUV0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGPSDPGAPVACWKRHIVRQLRLRDRTQKALFLELVPAYNRLLEKAELLARFSETLLPEPNSVTPATHQGPWEEEEAGPDSDQVPSPAALRVKWQEEEEGLRLECGEMAYQVVVKSAALGALESQLEERQSRLAALEARVAQLQEARAKKARQVDARRALNAAQQAAYEALRAHAGRQEAALRRLQEEARDLLERLVQRKARAAAERNLRNERRERAKQARVSLELKKAAKRTVSISESPDALDDGITEEAEPPALAAEPKSLESEAIEKWRRPFRSASATSLTVFRCVDVVKGLLDFKKRRGHSIGGAPEQRYQSIPVCLAARLPTRAQDVLEAHLSEVNAVHFGPNSSVLATGGADRLILLWNVVGGRLKAKQTLEGAGGSITSVDFDPSGSQVLAATYNKAAQLWKVGEAQSKETLSGHTDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTISVVSYCNDVVCGDHIIISGHNDQKIRFWDSRGPRCTQVIPVQGRVTSLSLSHDQLHLLSCSRDDTLKVIDLRVSNIRQVFRADGFKCGSDWTKAVFSPDRSYALAGSWDGALYIWDVDTGKLESSLRGPHCAAVNAKGEGTSQRSQPAEAAQGLGGRTFDQALPLPLSGASGWQDAHLASSVEGV", "length": 647, "header": "tr|F1SUV0-1|F1SUV0_PIG Isoform 1 of Protein Atg16l2 OS=Sus scrofa OX=9823 GN=ATG16L2 PE=3 SV=3 CANONICAL=F1SUV0-1" }, "isoforms": [ { "isoform_ac": "F1SUV0-1", "url": "https://www.uniprot.org/uniprotkb/F1SUV0/entry#F1SUV0-1", "sequence": { "sequence": "MAGPSDPGAPVACWKRHIVRQLRLRDRTQKALFLELVPAYNRLLEKAELLARFSETLLPEPNSVTPATHQGPWEEEEAGPDSDQVPSPAALRVKWQEEEEGLRLECGEMAYQVVVKSAALGALESQLEERQSRLAALEARVAQLQEARAKKARQVDARRALNAAQQAAYEALRAHAGRQEAALRRLQEEARDLLERLVQRKARAAAERNLRNERRERAKQARVSLELKKAAKRTVSISESPDALDDGITEEAEPPALAAEPKSLESEAIEKWRRPFRSASATSLTVFRCVDVVKGLLDFKKRRGHSIGGAPEQRYQSIPVCLAARLPTRAQDVLEAHLSEVNAVHFGPNSSVLATGGADRLILLWNVVGGRLKAKQTLEGAGGSITSVDFDPSGSQVLAATYNKAAQLWKVGEAQSKETLSGHTDKVTAAKFKLTRHQAVTGSRDRTVKEWDLGRAYCSRTISVVSYCNDVVCGDHIIISGHNDQKIRFWDSRGPRCTQVIPVQGRVTSLSLSHDQLHLLSCSRDDTLKVIDLRVSNIRQVFRADGFKCGSDWTKAVFSPDRSYALAGSWDGALYIWDVDTGKLESSLRGPHCAAVNAKGEGTSQRSQPAEAAQGLGGRTFDQALPLPLSGASGWQDAHLASSVEGV", "length": 647, "header": "tr|F1SUV0-1|F1SUV0_PIG Isoform 1 of Protein Atg16l2 OS=Sus scrofa OX=9823 GN=ATG16L2 PE=3 SV=3 CANONICAL=F1SUV0-1" }, "locus": { "chromosome": "9", "start_pos": 7364207, "end_pos": 7347037, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016170.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016170.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015737.4", "url": "https://www.ensembl.org/id/ENSSSCP00000015737.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 65, "start_aa": "Thr", "end_pos": 65, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr65", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1632852", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "resource": "Reactome", "description": "Macroautophagy" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "autophagosome assembly", "id": "GO:0000045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000045", "evidence": [ { "database": "UniProtKB", "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" } ], "pmid": "" }, { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" } ], "pmid": "" }, { "name": "phagophore assembly site membrane", "id": "GO:0034045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034045", "evidence": [ { "database": "UniProtKB", "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" } ], "pmid": "" }, { "name": "Atg12-Atg5-Atg16 complex", "id": "GO:0034274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034274", "evidence": [ { "database": "UniProtKB", "id": "F1SUV0", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUV0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 647, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUV0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUV0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUV0" }, { "id": "PF08614", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08614" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Autophagy-related protein 16", "eco_id": "ECO_0000259", "start_pos": 17, "end_pos": 209, "start_aa": "His", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 65 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 349, "end_pos": 351 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUY2-1", "uniprot_ac": "F1SUY2", "uniprot_id": "F1SUY2_PIG", "mass": { "chemical_mass": 32433.0, "monoisotopic_mass": 32433.0 }, "refseq": { "ac": "XP_003127645", "name": "leucine-rich repeat-containing protein 38", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127645" }, "gene_names": [ { "name": "LRRC38", "type": "recommended", "evidence": [ { "id": "F1SUY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY2" } ] }, { "name": "LRRC38", "type": "synonym", "evidence": [ { "id": "XP_003127645", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127645" } ] } ], "protein_names": [ { "name": "Leucine rich repeat containing 38", "type": "synonym", "evidence": [ { "id": "F1SUY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY2/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat-containing protein 38", "type": "synonym", "evidence": [ { "id": "XP_003127645", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127645" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUY2", "url": "https://www.uniprot.org/uniprotkb/F1SUY2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LRRC38", "url": "https://www.uniprot.org/uniprotkb/F1SUY2", "locus": { "chromosome": "6", "start_pos": 72934777, "end_pos": 72961187, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003449", "url": "https://www.ensembl.org/id/ENSSSCG00000003449" } ] } } ], "crossref": [ { "id": "F1SUY2", "url": "https://alphafold.ebi.ac.uk/entry/F1SUY2", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003449", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003449", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514055", "url": "https://www.ncbi.nlm.nih.gov/gene/100514055", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514055", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514055", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VNCFQRC", "url": "https://omabrowser.org/oma/group/VNCFQRC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SUY2", "url": "https://www.orthodb.org/?gene=F1SUY2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24369:SF213", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24369:SF213", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127645", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127645", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SUY2", "url": "https://www.uniprot.org/uniprotkb/F1SUY2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPRAAPRVPAALGLCSLLLLLRPGHACPEGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQHIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEAAFETLESLQVLELNDNNLRSLNVAALAALPALRTLRLDGNPWLCDCDFAHLFSWIQENASKLPKGLDEIQCSLPMENRRIYLHELSEASFSECKFSLSLTDLFIIIFSGVAVSIAAIISSFFLATVVQCFQRCAPNKDTEDEDDDEDD", "length": 294, "header": "tr|F1SUY2-1|F1SUY2_PIG Isoform 1 of Leucine rich repeat containing 38 OS=Sus scrofa OX=9823 GN=LRRC38 PE=4 SV=2 CANONICAL=F1SUY2-1" }, "isoforms": [ { "isoform_ac": "F1SUY2-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY2/entry#F1SUY2-1", "sequence": { "sequence": "MRPRAAPRVPAALGLCSLLLLLRPGHACPEGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQHIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEAAFETLESLQVLELNDNNLRSLNVAALAALPALRTLRLDGNPWLCDCDFAHLFSWIQENASKLPKGLDEIQCSLPMENRRIYLHELSEASFSECKFSLSLTDLFIIIFSGVAVSIAAIISSFFLATVVQCFQRCAPNKDTEDEDDDEDD", "length": 294, "header": "tr|F1SUY2-1|F1SUY2_PIG Isoform 1 of Leucine rich repeat containing 38 OS=Sus scrofa OX=9823 GN=LRRC38 PE=4 SV=2 CANONICAL=F1SUY2-1" }, "locus": { "chromosome": "6", "start_pos": 72960988, "end_pos": 72935781, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003830.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003830.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003743.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003743.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUY2", "url": "https://www.uniprot.org/uniprotkb/F1SUY2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514055", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514055", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A2VDH3-1", "protein_name": "Leucine-rich repeat-containing protein 38", "gene_name": "Lrrc38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLCVAPRHPTGAAAALGLGSLLVLLGPGRACPAGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQQIPEDFFIFHGDLVYLDFRNNSLRSLEEGTFSGSGKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNHLAGVHEAAFESLESLQVLELNDNNLRSLNVAALDALPALRTVRLDGNPWLCDCDFAHLFSWIQENTSKLPKGLDAIQCSLPMEDRRVALRELSEASFSECKFSLSLTDLFIIIFSGVAVSIAAIISSFFLATVVQCFQRCAPNKDTEDEDDDEDD", "length": 298 }, "evidence": [ { "id": "F1SUY2", "url": "https://omabrowser.org/oma/group/F1SUY2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3ZYA6-1", "protein_name": "Leucine rich repeat containing 38", "gene_name": "Lrrc38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLYAVPRRPTGAFAALGLGSLLVLLGPGRACPTGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQQIPEDFFIFHGDLVYLDFRNNSLRSLEEGTFSGSAKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLAGVHEAAFESLESLQVLELNGNNLRSLNVAALDALPALRTVRLDGNPWLCDCDFAHLFSWIQENASKLPKGLDAIQCSLPMEERRVALRELSEASFSECKFSLSLTDLFIIIFSGVAVSVAAIISSFFLATVVQCFQRCAPNKDTEDEDDDEDD", "length": 298 }, "evidence": [ { "id": "F1SUY2", "url": "https://omabrowser.org/oma/group/F1SUY2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MWX1-1", "protein_name": "Leucine rich repeat containing 38", "gene_name": "LRRC38", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRPRAAPRAPTGAAAAALGLFSFLLLLQPGHACPAGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQHIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLAGVHEAAFETLESLQVLELNDNNLRSLNVAALTALPALRTLRLDGNPWLCDCDFAHLFSWIQENVSKLPKGLDEIQCSLPMENRRIFLHELSEASFSECKFSLSLTDLFVIIFSGVAVSIAAIISSFFLATVVQCFQRCAPNKDTEDEDEDEDD", "length": 299 }, "evidence": [ { "id": "F1SUY2", "url": "https://omabrowser.org/oma/group/F1SUY2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5VT99-1", "protein_name": "Leucine-rich repeat-containing protein 38", "gene_name": "LRRC38", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPRAPACAAAALGLCSLLLLLAPGHACPAGCACTDPHTVDCRDRGLPSVPDPFPLDVRKLLVAGNRIQRIPEDFFIFYGDLVYLDFRNNSLRSLEEGTFSGSAKLVFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNNLVGVHEDAFETLESLQVLELNDNNLRSLSVAALAALPALRSLRLDGNPWLCDCDFAHLFSWIQENASKLPKGLDEIQCSLPMESRRISLRELSEASFSECRFSLSLTDLCIIIFSGVAVSIAAIISSFFLATVVQCLQRCAPNKDAEDEDEDKDD", "length": 294 }, "evidence": [ { "id": "F1SUY2", "url": "https://omabrowser.org/oma/group/F1SUY2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "F1SUY2", "url": "https://www.uniprot.org/uniprotkb/F1SUY2" } ], "pmid": "" }, { "name": "voltage-gated potassium channel activity", "id": "GO:0005249", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005249", "evidence": [ { "database": "UniProtKB", "id": "F1SUY2", "url": "https://www.uniprot.org/uniprotkb/F1SUY2" } ], "pmid": "" }, { "name": "potassium channel activator activity", "id": "GO:0099104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099104", "evidence": [ { "database": "UniProtKB", "id": "F1SUY2", "url": "https://www.uniprot.org/uniprotkb/F1SUY2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "voltage-gated potassium channel complex", "id": "GO:0008076", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008076", "evidence": [ { "database": "UniProtKB", "id": "F1SUY2", "url": "https://www.uniprot.org/uniprotkb/F1SUY2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 89, "end_pos": 91, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SUY2-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 294, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SUY2-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SUY2" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SUY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY2" }, { "id": "SM00082", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00082" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRCT", "eco_id": "ECO_0000259", "start_pos": 186, "end_pos": 240, "start_aa": "Asn", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SUY2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY2" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 60, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 115, "end_pos": 117 }, { "start_pos": 204, "end_pos": 206 }, { "start_pos": 89, "end_pos": 91 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUY8-1", "uniprot_ac": "F1SUY8", "uniprot_id": "F1SUY8_PIG", "mass": { "chemical_mass": 33941.0, "monoisotopic_mass": 33941.0 }, "refseq": { "ac": "XP_005653715", "name": "ecto-ADP-ribosyltransferase 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653715" }, "gene_names": [ { "name": "ART5", "type": "recommended", "evidence": [ { "id": "F1SUY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY8" } ] }, { "name": "ART5", "type": "synonym", "evidence": [ { "id": "XP_005653715", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653715" } ] } ], "protein_names": [ { "name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "type": "recommended", "evidence": [ { "id": "F1SUY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY8/entry#names_and_taxonomy" } ] }, { "name": "2.4.2.31", "type": "synonym", "evidence": [ { "id": "F1SUY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY8/entry#names_and_taxonomy" } ] }, { "name": "Mono(ADP-ribosyl)transferase", "type": "synonym", "evidence": [ { "id": "F1SUY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUY8/entry#names_and_taxonomy" } ] }, { "name": "ecto-ADP-ribosyltransferase 5", "type": "synonym", "evidence": [ { "id": "XP_005653715", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653715" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUY8", "url": "https://www.uniprot.org/uniprotkb/F1SUY8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ART5", "url": "https://www.uniprot.org/uniprotkb/F1SUY8", "locus": { "chromosome": "9", "start_pos": 6449208, "end_pos": 6442459, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000062852", "url": "https://www.ensembl.org/id/ENSSSCG00000062852" } ] } } ], "crossref": [ { "id": "100522939", "url": "https://www.ncbi.nlm.nih.gov/gene/100522939", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000768", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000768", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522939", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522939", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WEHRRQG", "url": "https://omabrowser.org/oma/group/WEHRRQG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SUY8", "url": "https://www.orthodb.org/?gene=F1SUY8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10339", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10339", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10339:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10339:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01129", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01129", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005653715", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005653715", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19149", "url": "https://www.rhea-db.org/rhea/19149", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8W4FGH9", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGH9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8W4FGH9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8W4FGH9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUY8", "url": "https://www.uniprot.org/uniprotkb/F1SUY8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUY8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMLAALLIILSCTGLHTFRTPNPEAAPEARNVSLLSLAPDTFDDAYVGCSELMEEKAAPLLEEEMARHPQLRESWGTAQKAWERRRPGLSLPPGFQAQHGIAIMVYTNSSNTLYRELNRAVRTLGDSRESYMTRFPFKALHFYLTRGLQLLQSSGGCSRGPGETVFRGVSSLRFAPKGLGDSVRFGQFASSSKDEAVARRFGTATFFSLRTCFGAPIEALSVFPDEREVLILPHEVFFVTNFSQHGAQNLVTLSSGNQLCSYFNCAYLGEKKRLGCEPVPPRGQASSLFKGAFPLLVASWGFQLLGAGL", "length": 309, "header": "tr|F1SUY8-1|F1SUY8_PIG Isoform 1 of NAD(P)(+)--arginine ADP-ribosyltransferase OS=Sus scrofa OX=9823 GN=ART5 PE=1 SV=2 CANONICAL=F1SUY8-1" }, "isoforms": [ { "isoform_ac": "A0A8W4FGH9-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY8/entry#A0A8W4FGH9-1", "sequence": { "sequence": "MMLAALLIILSCTGLHTFRTPNPEAAPEARNVSLLSLAPDTFDDAYVGCSELMEEKAAPLLEEEMARHPQLRESWGTAQKAWERRRPGLSLPPGFQAQHGIAIMVYTNSSNTLYRELNRAVRTLGDSRESYMTRFPFKALHFYLTRGLQLLQSSGGCSRGPGETVFRGVSSLRFAPKGLGDSVRFGQFASSSKDEAVARRFGTATFFSLRTCFGAPIEALSVFPDEREVLILPHEVFFVTNFSQHGAQNLVTLSSGNQLCSYFNCAYLARGQASSLFKGAFPLLVASWGFQLLGAGL", "length": 297, "header": "tr|A0A8W4FGH9-1|A0A8W4FGH9_PIG Computationally mapped isoform of NAD(P)(+)--arginine ADP-ribosyltransferase OS=Sus scrofa OX=9823 GN=ART5 PE=1 SV=1 CANONICAL=F1SUY8-1" }, "locus": { "chromosome": "9", "start_pos": 6448944, "end_pos": 6445970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000097156.2", "url": "https://www.ensembl.org/id/ENSSSCT00000097156.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000077419.2", "url": "https://www.ensembl.org/id/ENSSSCP00000077419.2" } ] } }, { "isoform_ac": "F1SUY8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUY8/entry#F1SUY8-1", "sequence": { "sequence": "MMLAALLIILSCTGLHTFRTPNPEAAPEARNVSLLSLAPDTFDDAYVGCSELMEEKAAPLLEEEMARHPQLRESWGTAQKAWERRRPGLSLPPGFQAQHGIAIMVYTNSSNTLYRELNRAVRTLGDSRESYMTRFPFKALHFYLTRGLQLLQSSGGCSRGPGETVFRGVSSLRFAPKGLGDSVRFGQFASSSKDEAVARRFGTATFFSLRTCFGAPIEALSVFPDEREVLILPHEVFFVTNFSQHGAQNLVTLSSGNQLCSYFNCAYLGEKKRLGCEPVPPRGQASSLFKGAFPLLVASWGFQLLGAGL", "length": 309, "header": "tr|F1SUY8-1|F1SUY8_PIG Isoform 1 of NAD(P)(+)--arginine ADP-ribosyltransferase OS=Sus scrofa OX=9823 GN=ART5 PE=1 SV=2 CANONICAL=F1SUY8-1" }, "locus": { "chromosome": "9", "start_pos": 6448944, "end_pos": 6445970, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000106957.1", "url": "https://www.ensembl.org/id/ENSSSCT00000106957.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000081372.1", "url": "https://www.ensembl.org/id/ENSSSCP00000081372.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUY8", "url": "https://www.uniprot.org/uniprotkb/F1SUY8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522939", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522939", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061ICQ0-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MILEDLLMVLSCLGLHTLWKVQAVPILPLSLVPDTFDDAYVGCSEEMDEKAGLLLKEEMARHPLLRESWEAAQEAWEHRRHMLTLPPGFRAQHGIAIMVYTNSSNTLYWELNQAVRTGGGSRELYMRHFPFKALHFYLTRALQLLRDTGGCSRGDGEVVFRGVGSLHFEPKRLGDFVRLGQFTSSSLDETVARGFGNATFFSLRTCFGALIQALSVFPEEREVLIPPHEVFLVTGFFQDGAQRIVTLWSSNQTCSHFNCAYLGGEKRHGCVSSTTVGQPELSSTEALALRSGKTMLLAPGELQLSRAGP", "length": 309 }, "evidence": [ { "id": "F1SUY8", "url": "https://omabrowser.org/oma/group/F1SUY8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1BI74-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLAALLIALSCLSLHTLGSSVRPSVPWQNISIQNLSLAPDTFDDAYVGCSEEMEEKAVLLLEKEMADHALLRESWETAQKAWEQKRAGLTLPPGFRSQHGIAIMVYTNSSNTLYRELNQAVRTGGGSWESYMNHFPFKALHFYLTRALQLLRGGGGCSREPGQVVFRGVGTIRFEPKSVGDSIRLGQFTSSSLDETVARGFGNATFFSLRTCFGAPIQALSVFPKEREVLIPPHEVFVVTSFFKDGNNSLVTLSSSDQMCSHFNCAYLGEKKRLSCESVPSEQADSLSKGPFLCSPGRPCSWPLGGSSF", "length": 309 }, "evidence": [ { "id": "F1SUY8", "url": "https://omabrowser.org/oma/group/F1SUY8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P70352-1", "protein_name": "Ecto-ADP-ribosyltransferase 5", "gene_name": "Art5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MILEDLLMVLSCLSLHALWKVRAVPILPLSLVPDTFDDAYVGCSEEMEEKAGLLLKEEMARHALLRESWEAAQEAWAHRRHKLTLPPGFKAQHGVAIMVYTNSSNTLYWELNQAVRTGGGSRELYMRHFPFKALHFYLTRALQLLRGSGGCSRGPGEVVFRGVGSLHFEPKRLGDSVRLGQFTSSSVDERVARRFGNATFFNLRTCFGAPIQALSVFPEEREVLIPPHEVFLVTGFSQDGAQSIVTLWSYDQTCSHFNCAYLGGEKRRGCVSSRAVGQPEAPSTEALALQSGKTLLLDPRKLQLSRAGP", "length": 309 }, "evidence": [ { "id": "F1SUY8", "url": "https://omabrowser.org/oma/group/F1SUY8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5XHY4-1", "protein_name": "Ecto-ADP-ribosyltransferase 5", "gene_name": "Art5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILEDLLMVLSCLALHILWKVQAVPILPLSLVPDTFDDAYVGCSEEMEEKAGLLLKEEMARHALLRESWEAAQEAWAHGRHKLTLPPGFKAQHGVAVMVYTNSSNTLYWELNQAVRTGGRSRELYMRHFPFKALHFYLTRALQLLRGTGGCSREAGEVVFRGVSSLHFEPKRLGDSVRLGQFASSSVDERVARRFGNATFFNLRTCFGAPIQALSVFPEEREVLIPPHEVFLVTGFSQDGAQSIVTLWSYNQTCSHFNCAYLGGEKRRGCVSSRAGQPESFSTEALALQSGKTLLLAPGELQLSRAGP", "length": 308 }, "evidence": [ { "id": "F1SUY8", "url": "https://omabrowser.org/oma/group/F1SUY8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q96L15-1", "protein_name": "Ecto-ADP-ribosyltransferase 5", "gene_name": "ART5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MALAALMIALGSLGLHTWQAQAVPILPLGLAPDTFDDTYVGCAEEMEEKAAPLLKEEMAHHALLRESWEAAQETWEDKRRGLTLPPGFKAQNGIAIMVYTNSSNTLYWELNQAVRTGGGSRELYMRHFPFKALHFYLIRALQLLRGSGGCSRGPGEVVFRGVGSLRFEPKRLGDSVRLGQFASSSLDKAVAHRFGNATLFSLTTCFGAPIQAFSVFPKEREVLIPPHEVFLVTRFSQDGAQSLVTLWSYNQTCSHFNCAYLGGEKRRGCVSAPGALGTGDLHMTKRHLQQP", "length": 291 }, "evidence": [ { "id": "F1SUY8", "url": "https://omabrowser.org/oma/group/F1SUY8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "F1SUY8", "url": "https://www.uniprot.org/uniprotkb/F1SUY8" } ], "pmid": "" }, { "name": "NAD+ poly-ADP-ribosyltransferase activity", "id": "GO:0003950", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003950", "evidence": [ { "database": "UniProtKB", "id": "F1SUY8", "url": "https://www.uniprot.org/uniprotkb/F1SUY8" } ], "pmid": "" }, { "name": "NAD+-protein-arginine ADP-ribosyltransferase activity", "id": "GO:0106274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106274", "evidence": [ { "database": "UniProtKB", "id": "F1SUY8", "url": "https://www.uniprot.org/uniprotkb/F1SUY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 31, "end_pos": 33, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19149", "name": "", "equation": "L-arginyl-[protein] + NAD(+) = N(omega)-(ADP-D-ribosyl)-L-arginyl-[protein] + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19149", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19149" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 }, { "start_pos": 241, "end_pos": 243 }, { "start_pos": 31, "end_pos": 33 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SUZ8-1", "uniprot_ac": "F1SUZ8", "uniprot_id": "F1SUZ8_PIG", "mass": { "chemical_mass": 19149.0, "monoisotopic_mass": 19149.0 }, "refseq": {}, "gene_names": [ { "name": "HOATZ", "type": "recommended", "evidence": [ { "id": "F1SUZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8" } ] } ], "protein_names": [ { "name": "Cilia- and flagella-associated protein HOATZ", "type": "recommended", "evidence": [ { "id": "F1SUZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SUZ8", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "HOATZ", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8", "locus": { "chromosome": "9", "start_pos": 39304804, "end_pos": 39276995, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015021", "url": "https://www.ensembl.org/id/ENSSSCG00000015021" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015021", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015021", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR040681", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040681", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "TVCSERQ", "url": "https://omabrowser.org/oma/group/TVCSERQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SUZ8", "url": "https://www.orthodb.org/?gene=F1SUZ8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47231", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47231", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47231:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47231:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF17664", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17664", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SUZ8", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SUZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "METRPSSGPSSRTESCEICPQGLLVFTGSSDLDANLAKQFWIGASMYPPNESQLVLSRGSSQRLRVARASKSSAPEKSYFQPFFLEKSKNRDGVTETLKIQESEEKKKYLQKAKKRDEIIQLLRKQREERISKELVSLPYKPEAKVHKAKKVISESDKKDREEVKALD", "length": 168, "header": "tr|F1SUZ8-1|F1SUZ8_PIG Isoform 1 of Cilia- and flagella-associated protein HOATZ OS=Sus scrofa OX=9823 GN=HOATZ PE=3 SV=2 CANONICAL=F1SUZ8-1" }, "isoforms": [ { "isoform_ac": "F1SUZ8-1", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8/entry#F1SUZ8-1", "sequence": { "sequence": "METRPSSGPSSRTESCEICPQGLLVFTGSSDLDANLAKQFWIGASMYPPNESQLVLSRGSSQRLRVARASKSSAPEKSYFQPFFLEKSKNRDGVTETLKIQESEEKKKYLQKAKKRDEIIQLLRKQREERISKELVSLPYKPEAKVHKAKKVISESDKKDREEVKALD", "length": 168, "header": "tr|F1SUZ8-1|F1SUZ8_PIG Isoform 1 of Cilia- and flagella-associated protein HOATZ OS=Sus scrofa OX=9823 GN=HOATZ PE=3 SV=2 CANONICAL=F1SUZ8-1" }, "locus": { "chromosome": "9", "start_pos": 39304679, "end_pos": 39281626, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016385.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016385.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015944.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015944.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ8", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AAL4-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "Hoatz", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METGPRGCPSVRKEPQEICSPGLLVFTGCSEQDANLAKQFWLGASMYPTTESQLVLTRGSSQRLPVARNSKVLVSERNSVKPFPFDHNKEEILFAKAQKVQESEEKANYLQKAKKRDEILQLLRKQREERILKELISLPYKPKAKMPKSEEVLSESDLKDQEEVKALE", "length": 168 }, "evidence": [ { "id": "F1SUZ8", "url": "https://omabrowser.org/oma/group/F1SUZ8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A9J7FSY3-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "Hoatz", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "METGHKSSSSCRKDTHEICSPGLLVFTGCSEQDANLAKQFWLGASMYPPAESQLVLTRNSSQRLPVARNSKDLVREKNSAWSFPFDQNKETDVFAKVQKIQESEEKAKFLEKAKKRDEIIQLLRKQREERILKELVSLPHKPKAKVPEAKEVSSESDKQEQEEVKALE", "length": 168 }, "evidence": [ { "id": "F1SUZ8", "url": "https://omabrowser.org/oma/group/F1SUZ8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A5PN52-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "hoatz", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSEELDEEVLDGLTEVEKLYTVFHGASQEDVAYAKLFWNSLSLQPPIESRLVSSDIRQRLKVAKTPNTTNAAANQAPWSKRNEEIQQDAYLRQKQEEKQRYMEMAKNRDQIIALLKKQRDERIKKEMIAYKHKPKKGKLEEKRLAPKTLSSDVDEDQKEVQKLQ", "length": 164 }, "evidence": [ { "id": "F1SUZ8", "url": "https://omabrowser.org/oma/group/F1SUZ8/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q32P68-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "HOATZ", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "METRPSSSLSSPEESCEAFPQGLLVFTGSSDRDANLAKQFWIGASMYPHNESQLVLSRGSSQRLPVARPSRSSAPEKTYFQPFFLEESKSRDVTAETLKIQESEEKKKYLQKAKKRDEIIQLLRKQREERILKELISLPHKPKGKVHKAKKVISESDKEDQEEVKALD", "length": 168 }, "evidence": [ { "id": "F1SUZ8", "url": "https://omabrowser.org/oma/group/F1SUZ8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PI97-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "HOATZ", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGPSEEPSGRKESQEMCPPGLLVFAGSSEQDANLAKQFWISASMYPPSESQLVLRRDSSQRLPVARPRRSRGSENSHSSQSFHLASNKNRDIFAEALKIQESEEKVKYLQKAKTREEILQLLRKQREERISKELISLPYKPKAKEHKAKKVVSESDKEDQEEVKTLD", "length": 169 }, "evidence": [ { "id": "F1SUZ8", "url": "https://omabrowser.org/oma/group/F1SUZ8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q80Y73-1", "protein_name": "Cilia- and flagella-associated protein HOATZ", "gene_name": "Hoatz", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METGPRGCPSGRKESQEICSPGLLVFTGCSEQDANLAKQFWLGASMYPTTESQLVLTRGSSQRLPVARNSKVVLREKSSVQPFPFDQDKDAIIFAKAQRIQESEERAKYLQKAKTRDEILQLLRKQREERISKELISLPYKPKDKVPKSKEVLSESGLRDQEEVKALE", "length": 168 }, "evidence": [ { "id": "F1SUZ8", "url": "https://omabrowser.org/oma/group/F1SUZ8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ8", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8" } ], "pmid": "" }, { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ8", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ8", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8" } ], "pmid": "" }, { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ8", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8" } ], "pmid": "" }, { "name": "axoneme assembly", "id": "GO:0035082", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035082", "evidence": [ { "database": "UniProtKB", "id": "F1SUZ8", "url": "https://www.uniprot.org/uniprotkb/F1SUZ8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 50, "end_pos": 52 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV08-1", "uniprot_ac": "F1SV08", "uniprot_id": "F1SV08_PIG", "mass": { "chemical_mass": 44558.0, "monoisotopic_mass": 44558.0 }, "refseq": {}, "gene_names": [ { "name": "BMP8B", "type": "recommended", "evidence": [ { "id": "F1SV08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ] } ], "protein_names": [ { "name": "Bone morphotic protein 8b", "type": "synonym", "evidence": [ { "id": "F1SV08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV08/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "BMP8B", "url": "https://www.uniprot.org/uniprotkb/F1SV08", "locus": {} } ], "crossref": [ { "id": "F1SV08", "url": "https://alphafold.ebi.ac.uk/entry/F1SV08", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000037514", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037514", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19398", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19398", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015615", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015615", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017948", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017948", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11848", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11848", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11848:SF119", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11848:SF119", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00019", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00019", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00688", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00688", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV08-1", "url": "https://www.uniprot.org/uniprotkb/F1SV08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAARPGTLWLLGLVLCTLSGCGPGPRPPPGCPQSRLGPRERRDLQREILAVLGLPGRPRPRAPPAGAGLPASAPLFMLDLYRAMAGDDDEDGGAPERRLGRADLVMSFVNMVERDRALGHQEPHWKEFHFDLTQIPAGEAVTAAEFRIYKLPSTHQLNQTLHVSMFEVVPEQSNRESDLFFLDLQTLRSGDEGWLVLDVTAASDRWLLNRSKDLGLRLYVETDDGRSVDPGLAGLLGRQAPRSKQPFVVTFFRASPPVRAPRAVRPLRRRPPKRSNELPPPNKLPGIFDDVHGSHGRQVCRRHELYVSFQDLGWLDWVIAPQGYSAYYCEGECSFPLDSCMNATNHAILQSLVHLMKPDAVPKACCAPTKLSATSVLYYDSSNNVILRKHRNMVVRACGCH", "length": 401, "header": "tr|F1SV08-1|F1SV08_PIG Isoform 1 of Bone morphotic protein 8b OS=Sus scrofa OX=9823 GN=BMP8B PE=3 SV=3 CANONICAL=F1SV08-1" }, "isoforms": [ { "isoform_ac": "F1SV08-1", "url": "https://www.uniprot.org/uniprotkb/F1SV08/entry#F1SV08-1", "sequence": { "sequence": "MAARPGTLWLLGLVLCTLSGCGPGPRPPPGCPQSRLGPRERRDLQREILAVLGLPGRPRPRAPPAGAGLPASAPLFMLDLYRAMAGDDDEDGGAPERRLGRADLVMSFVNMVERDRALGHQEPHWKEFHFDLTQIPAGEAVTAAEFRIYKLPSTHQLNQTLHVSMFEVVPEQSNRESDLFFLDLQTLRSGDEGWLVLDVTAASDRWLLNRSKDLGLRLYVETDDGRSVDPGLAGLLGRQAPRSKQPFVVTFFRASPPVRAPRAVRPLRRRPPKRSNELPPPNKLPGIFDDVHGSHGRQVCRRHELYVSFQDLGWLDWVIAPQGYSAYYCEGECSFPLDSCMNATNHAILQSLVHLMKPDAVPKACCAPTKLSATSVLYYDSSNNVILRKHRNMVVRACGCH", "length": 401, "header": "tr|F1SV08-1|F1SV08_PIG Isoform 1 of Bone morphotic protein 8b OS=Sus scrofa OX=9823 GN=BMP8B PE=3 SV=3 CANONICAL=F1SV08-1" }, "locus": { "chromosome": "6", "start_pos": 95599055, "end_pos": 95570138, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004054.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004054.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003963.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003963.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ], "pmid": "" }, { "name": "BMP signaling pathway", "id": "GO:0030509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030509", "evidence": [ { "database": "UniProtKB", "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ], "pmid": "" }, { "name": "ossification", "id": "GO:0001503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001503", "evidence": [ { "database": "UniProtKB", "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ], "pmid": "" }, { "name": "cartilage development", "id": "GO:0051216", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051216", "evidence": [ { "database": "UniProtKB", "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "cytokine activity", "id": "GO:0005125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005125", "evidence": [ { "database": "UniProtKB", "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ], "pmid": "" }, { "name": "growth factor activity", "id": "GO:0008083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "F1SV08", "url": "https://www.uniprot.org/uniprotkb/F1SV08" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 209, "end_pos": 211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 342, "end_pos": 344, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SV08-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 401, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SV08-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SV08" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV08" }, { "id": "PS51362", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51362" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TGF-beta family profile", "eco_id": "ECO_0000259", "start_pos": 271, "end_pos": 401, "start_aa": "Pro", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 158, "end_pos": 160 }, { "start_pos": 209, "end_pos": 211 }, { "start_pos": 342, "end_pos": 344 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV23-1", "uniprot_ac": "F1SV23", "uniprot_id": "F1SV23_PIG", "mass": { "chemical_mass": 12481.0, "monoisotopic_mass": 12481.0 }, "refseq": { "ac": "NP_001231917", "name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231917" }, "gene_names": [ { "name": "NDUFS5", "type": "recommended", "evidence": [ { "id": "F1SV23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ] }, { "name": "NDUFS5", "type": "synonym", "evidence": [ { "id": "NP_001231917", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231917" } ] } ], "protein_names": [ { "name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "type": "recommended", "evidence": [ { "id": "F1SV23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV23/entry#names_and_taxonomy" } ] }, { "name": "Complex I-15 kDa", "type": "synonym", "evidence": [ { "id": "F1SV23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV23/entry#names_and_taxonomy" } ] }, { "name": "NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kDa (NADH-coenzyme Q reductase)", "type": "synonym", "evidence": [ { "id": "NP_001231917", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231917" } ] }, { "name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "type": "synonym", "evidence": [ { "id": "NP_001231917", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231917" } ] }, { "name": "NADH-ubiquinone oxidoreductase 15 kDa subunit", "type": "synonym", "evidence": [ { "id": "F1SV23", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV23/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23#function" }, { "database": "UniProtKB", "id": "ARBA00003195", "url": "https://www.uniprot.org/uniprotkb/ARBA00003195#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NDUFS5", "url": "https://www.uniprot.org/uniprotkb/F1SV23", "locus": { "chromosome": "6", "start_pos": 94919452, "end_pos": 94913076, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003653", "url": "https://www.ensembl.org/id/ENSSSCG00000003653" } ] } } ], "crossref": [ { "id": "F1SV23", "url": "https://alphafold.ebi.ac.uk/entry/F1SV23", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003653", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003653", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd24141", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd24141", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514655", "url": "https://www.ncbi.nlm.nih.gov/gene/100514655", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "5GPN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GPN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=5GUP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V30&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V33&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7V3M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VBP&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VC0&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VWL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VXS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY1&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VY9&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYE&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYG&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYI&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VYS&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZ8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZV&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7VZW&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W00&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W0Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1T&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1V&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W1Z&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W20&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2R&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2U&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W2Y&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W31&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W32&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W35&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4C&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4D&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4E&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4F&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4G&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4J&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4K&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4L&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4M&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4N&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=7W4Q&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZOU&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZP8&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSK&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSL&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSM&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSN&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSO&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSQ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZSR&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=8ZXZ&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CE2&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6H&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9J6W&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR019342", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019342", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514655", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514655", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RQQRDKM", "url": "https://omabrowser.org/oma/group/RQQRDKM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV23", "url": "https://www.orthodb.org/?gene=F1SV23", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15224:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15224:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00005gpn", "url": "https://www.rcsb.org/structure/pdb_00005gpn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00005gup", "url": "https://www.rcsb.org/structure/pdb_00005gup", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2c", "url": "https://www.rcsb.org/structure/pdb_00007v2c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2d", "url": "https://www.rcsb.org/structure/pdb_00007v2d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2e", "url": "https://www.rcsb.org/structure/pdb_00007v2e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2f", "url": "https://www.rcsb.org/structure/pdb_00007v2f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2h", "url": "https://www.rcsb.org/structure/pdb_00007v2h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2k", "url": "https://www.rcsb.org/structure/pdb_00007v2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v2r", "url": "https://www.rcsb.org/structure/pdb_00007v2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v30", "url": "https://www.rcsb.org/structure/pdb_00007v30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v31", "url": "https://www.rcsb.org/structure/pdb_00007v31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v32", "url": "https://www.rcsb.org/structure/pdb_00007v32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v33", "url": "https://www.rcsb.org/structure/pdb_00007v33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007v3m", "url": "https://www.rcsb.org/structure/pdb_00007v3m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbl", "url": "https://www.rcsb.org/structure/pdb_00007vbl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vbp", "url": "https://www.rcsb.org/structure/pdb_00007vbp", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vc0", "url": "https://www.rcsb.org/structure/pdb_00007vc0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vwl", "url": "https://www.rcsb.org/structure/pdb_00007vwl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vxs", "url": "https://www.rcsb.org/structure/pdb_00007vxs", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy1", "url": "https://www.rcsb.org/structure/pdb_00007vy1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vy9", "url": "https://www.rcsb.org/structure/pdb_00007vy9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vye", "url": "https://www.rcsb.org/structure/pdb_00007vye", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyg", "url": "https://www.rcsb.org/structure/pdb_00007vyg", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vyi", "url": "https://www.rcsb.org/structure/pdb_00007vyi", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vys", "url": "https://www.rcsb.org/structure/pdb_00007vys", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vz8", "url": "https://www.rcsb.org/structure/pdb_00007vz8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzv", "url": "https://www.rcsb.org/structure/pdb_00007vzv", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007vzw", "url": "https://www.rcsb.org/structure/pdb_00007vzw", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w00", "url": "https://www.rcsb.org/structure/pdb_00007w00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0h", "url": "https://www.rcsb.org/structure/pdb_00007w0h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0r", "url": "https://www.rcsb.org/structure/pdb_00007w0r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w0y", "url": "https://www.rcsb.org/structure/pdb_00007w0y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1o", "url": "https://www.rcsb.org/structure/pdb_00007w1o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1p", "url": "https://www.rcsb.org/structure/pdb_00007w1p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1t", "url": "https://www.rcsb.org/structure/pdb_00007w1t", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1u", "url": "https://www.rcsb.org/structure/pdb_00007w1u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1v", "url": "https://www.rcsb.org/structure/pdb_00007w1v", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w1z", "url": "https://www.rcsb.org/structure/pdb_00007w1z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w20", "url": "https://www.rcsb.org/structure/pdb_00007w20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2k", "url": "https://www.rcsb.org/structure/pdb_00007w2k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2l", "url": "https://www.rcsb.org/structure/pdb_00007w2l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2r", "url": "https://www.rcsb.org/structure/pdb_00007w2r", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2u", "url": "https://www.rcsb.org/structure/pdb_00007w2u", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w2y", "url": "https://www.rcsb.org/structure/pdb_00007w2y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w31", "url": "https://www.rcsb.org/structure/pdb_00007w31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w32", "url": "https://www.rcsb.org/structure/pdb_00007w32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w35", "url": "https://www.rcsb.org/structure/pdb_00007w35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4c", "url": "https://www.rcsb.org/structure/pdb_00007w4c", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4d", "url": "https://www.rcsb.org/structure/pdb_00007w4d", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4e", "url": "https://www.rcsb.org/structure/pdb_00007w4e", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4f", "url": "https://www.rcsb.org/structure/pdb_00007w4f", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4g", "url": "https://www.rcsb.org/structure/pdb_00007w4g", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4j", "url": "https://www.rcsb.org/structure/pdb_00007w4j", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4k", "url": "https://www.rcsb.org/structure/pdb_00007w4k", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4l", "url": "https://www.rcsb.org/structure/pdb_00007w4l", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4m", "url": "https://www.rcsb.org/structure/pdb_00007w4m", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4n", "url": "https://www.rcsb.org/structure/pdb_00007w4n", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00007w4q", "url": "https://www.rcsb.org/structure/pdb_00007w4q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zou", "url": "https://www.rcsb.org/structure/pdb_00008zou", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zp8", "url": "https://www.rcsb.org/structure/pdb_00008zp8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsk", "url": "https://www.rcsb.org/structure/pdb_00008zsk", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsl", "url": "https://www.rcsb.org/structure/pdb_00008zsl", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsm", "url": "https://www.rcsb.org/structure/pdb_00008zsm", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsn", "url": "https://www.rcsb.org/structure/pdb_00008zsn", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zso", "url": "https://www.rcsb.org/structure/pdb_00008zso", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsq", "url": "https://www.rcsb.org/structure/pdb_00008zsq", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zsr", "url": "https://www.rcsb.org/structure/pdb_00008zsr", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00008zxz", "url": "https://www.rcsb.org/structure/pdb_00008zxz", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009ce2", "url": "https://www.rcsb.org/structure/pdb_00009ce2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6h", "url": "https://www.rcsb.org/structure/pdb_00009j6h", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00009j6w", "url": "https://www.rcsb.org/structure/pdb_00009j6w", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GPN", "url": "https://www.rcsb.org/structure/5GPN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "5GUP", "url": "https://www.rcsb.org/structure/5GUP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2C", "url": "https://www.rcsb.org/structure/7V2C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2D", "url": "https://www.rcsb.org/structure/7V2D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2E", "url": "https://www.rcsb.org/structure/7V2E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2F", "url": "https://www.rcsb.org/structure/7V2F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2H", "url": "https://www.rcsb.org/structure/7V2H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2K", "url": "https://www.rcsb.org/structure/7V2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V2R", "url": "https://www.rcsb.org/structure/7V2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V30", "url": "https://www.rcsb.org/structure/7V30", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V31", "url": "https://www.rcsb.org/structure/7V31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V32", "url": "https://www.rcsb.org/structure/7V32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V33", "url": "https://www.rcsb.org/structure/7V33", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7V3M", "url": "https://www.rcsb.org/structure/7V3M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBL", "url": "https://www.rcsb.org/structure/7VBL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VBP", "url": "https://www.rcsb.org/structure/7VBP", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VC0", "url": "https://www.rcsb.org/structure/7VC0", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VWL", "url": "https://www.rcsb.org/structure/7VWL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VXS", "url": "https://www.rcsb.org/structure/7VXS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY1", "url": "https://www.rcsb.org/structure/7VY1", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VY9", "url": "https://www.rcsb.org/structure/7VY9", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYE", "url": "https://www.rcsb.org/structure/7VYE", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYG", "url": "https://www.rcsb.org/structure/7VYG", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYI", "url": "https://www.rcsb.org/structure/7VYI", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VYS", "url": "https://www.rcsb.org/structure/7VYS", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZ8", "url": "https://www.rcsb.org/structure/7VZ8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZV", "url": "https://www.rcsb.org/structure/7VZV", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7VZW", "url": "https://www.rcsb.org/structure/7VZW", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W00", "url": "https://www.rcsb.org/structure/7W00", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0H", "url": "https://www.rcsb.org/structure/7W0H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0R", "url": "https://www.rcsb.org/structure/7W0R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W0Y", "url": "https://www.rcsb.org/structure/7W0Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1O", "url": "https://www.rcsb.org/structure/7W1O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1P", "url": "https://www.rcsb.org/structure/7W1P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1T", "url": "https://www.rcsb.org/structure/7W1T", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1U", "url": "https://www.rcsb.org/structure/7W1U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1V", "url": "https://www.rcsb.org/structure/7W1V", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W1Z", "url": "https://www.rcsb.org/structure/7W1Z", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W20", "url": "https://www.rcsb.org/structure/7W20", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2K", "url": "https://www.rcsb.org/structure/7W2K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2L", "url": "https://www.rcsb.org/structure/7W2L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2R", "url": "https://www.rcsb.org/structure/7W2R", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2U", "url": "https://www.rcsb.org/structure/7W2U", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W2Y", "url": "https://www.rcsb.org/structure/7W2Y", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W31", "url": "https://www.rcsb.org/structure/7W31", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W32", "url": "https://www.rcsb.org/structure/7W32", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W35", "url": "https://www.rcsb.org/structure/7W35", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4C", "url": "https://www.rcsb.org/structure/7W4C", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4D", "url": "https://www.rcsb.org/structure/7W4D", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4E", "url": "https://www.rcsb.org/structure/7W4E", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4F", "url": "https://www.rcsb.org/structure/7W4F", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4G", "url": "https://www.rcsb.org/structure/7W4G", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4J", "url": "https://www.rcsb.org/structure/7W4J", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4K", "url": "https://www.rcsb.org/structure/7W4K", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4L", "url": "https://www.rcsb.org/structure/7W4L", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4M", "url": "https://www.rcsb.org/structure/7W4M", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4N", "url": "https://www.rcsb.org/structure/7W4N", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "7W4Q", "url": "https://www.rcsb.org/structure/7W4Q", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZOU", "url": "https://www.rcsb.org/structure/8ZOU", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZP8", "url": "https://www.rcsb.org/structure/8ZP8", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSK", "url": "https://www.rcsb.org/structure/8ZSK", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSL", "url": "https://www.rcsb.org/structure/8ZSL", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSM", "url": "https://www.rcsb.org/structure/8ZSM", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSN", "url": "https://www.rcsb.org/structure/8ZSN", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSO", "url": "https://www.rcsb.org/structure/8ZSO", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSQ", "url": "https://www.rcsb.org/structure/8ZSQ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZSR", "url": "https://www.rcsb.org/structure/8ZSR", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "8ZXZ", "url": "https://www.rcsb.org/structure/8ZXZ", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CE2", "url": "https://www.rcsb.org/structure/9CE2", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6H", "url": "https://www.rcsb.org/structure/9J6H", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9J6W", "url": "https://www.rcsb.org/structure/9J6W", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF10200", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10200", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-611105", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6799198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231917", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231917", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV23-1", "url": "https://www.uniprot.org/uniprotkb/F1SV23-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEFDDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP", "length": 106, "header": "tr|F1SV23-1|F1SV23_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Sus scrofa OX=9823 GN=NDUFS5 PE=1 SV=1 CANONICAL=F1SV23-1" }, "isoforms": [ { "isoform_ac": "F1SV23-1", "url": "https://www.uniprot.org/uniprotkb/F1SV23/entry#F1SV23-1", "sequence": { "sequence": "MPFFDVQKRLGLDLDRWMTIQSAEQPHKIPGRCHAFEKEWIECAHGIGGIRAEKECKIEFDDFVECLLRQKTMKRLSAIKRQRDKLIKEGKYTPPPHHLGKEDPRP", "length": 106, "header": "tr|F1SV23-1|F1SV23_PIG Isoform 1 of NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 OS=Sus scrofa OX=9823 GN=NDUFS5 PE=1 SV=1 CANONICAL=F1SV23-1" }, "locus": { "chromosome": "6", "start_pos": 94919335, "end_pos": 94916098, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004049.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004049.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003958.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003958.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "The architecture of the mammalian respirasome.", "journal": "Nature", "date": "2016", "authors": "Gu Jinke, Wu Meng, Guo Runyu, Yan Kaige, Lei Jianlin, Gao Ning, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "reference": [ { "type": "PubMed", "id": "27654917", "url": "https://glygen.org/publication/PubMed/27654917" } ] }, { "title": "Structure of Mammalian Respiratory Supercomplex I1III2IV1.", "journal": "Cell", "date": "2016", "authors": "Wu Meng, Gu Jinke, Guo Runyu, Huang Yushen, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "reference": [ { "type": "PubMed", "id": "27912063", "url": "https://glygen.org/publication/PubMed/27912063" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "The coupling mechanism of mammalian mitochondrial complex I.", "journal": "Nat. Struct. Mol. Biol.", "date": "2022", "authors": "Gu Jinke, Liu Tianya, Guo Runyu, Zhang Laixing, Yang Maojun", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "reference": [ { "type": "PubMed", "id": "35145322", "url": "https://glygen.org/publication/PubMed/35145322" } ] } ], "pathway": [ { "id": "ssc:100514655", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514655", "resource": "KEGG Pathway" }, { "id": "R-SSC-611105", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-611105", "resource": "Reactome", "description": "Respiratory electron transport" }, { "id": "R-SSC-6799198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6799198", "resource": "Reactome", "description": "Complex I biogenesis" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3L7I7X9-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "gene_name": "Ndufs5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPFLDVQKRLGISLDRHLVFQSVEQPYKIPSRCHAFEKEWIECSHGIGATRAKKECNIEYEDYKECLLRFKTIMRLNEIKLHRNKLMKEGKYTPPPHFVGKGDPRP", "length": 106 }, "evidence": [ { "id": "F1SV23", "url": "https://omabrowser.org/oma/group/F1SV23/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "B5DEL8-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "gene_name": "Ndufs5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPFLDVQKRLGISLDRHFIFLSAEQPYKNAARCHAFEKEWIECAHGIGATRAKKECKIEYEDFEECFLRFKTIRRMHEIKKQREKLMKEGKYTPPPHHLGKEEPRP", "length": 106 }, "evidence": [ { "id": "F1SV23", "url": "https://omabrowser.org/oma/group/F1SV23/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1C5D2-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "gene_name": "NDUFS5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPFWDLQRQLGIDVDRWLLRQSTTQPYGVAGACHAFEREWVECGHGLGQTRARRECQPEYEDFMECMHRTKLALRLKKILEQRDKMIKEGKYTPPEYHKGEKDTRP", "length": 106 }, "evidence": [ { "id": "F1SV23", "url": "https://omabrowser.org/oma/group/F1SV23/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O43920-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "gene_name": "NDUFS5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPFLDIQKRFGLNIDRWLTIQSGEQPYKMAGRCHAFEKEWIECAHGIGYTRAEKECKIEYDDFVECLLRQKTMRRAGTIRKQRDKLIKEGKYTPPPHHIGKGEPRP", "length": 106 }, "evidence": [ { "id": "F1SV23", "url": "https://omabrowser.org/oma/group/F1SV23/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q02379-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "gene_name": "NDUFS5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFFDVQKRLGVDLDRWMTIQSAEQPHKIPSRCHAFEKEWIECAHGIGSIRAEKECKIEFEDFRECLLRQKTMKRLHAIRRQREKLIKEGKYTPPPHHSGQEEPRS", "length": 106 }, "evidence": [ { "id": "F1SV23", "url": "https://omabrowser.org/oma/group/F1SV23/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99LY9-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 5", "gene_name": "Ndufs5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPFLDIQKKLGISLDRHFMFLSAEQPYKNAARCHAFEKEWIECAHGIGGTRAKKECKIEFDDFEECLLRYKTMRRMHDIKKQREKLMKEGKYTPPPHHSGREEPRP", "length": 106 }, "evidence": [ { "id": "F1SV23", "url": "https://omabrowser.org/oma/group/F1SV23/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "pmid": "" }, { "name": "mitochondrial intermembrane space", "id": "GO:0005758", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005758", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "pmid": "" }, { "name": "respiratory chain complex I", "id": "GO:0045271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045271", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "mitochondrial respiratory chain complex I assembly", "id": "GO:0032981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032981", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "pmid": "" }, { "name": "respiratory electron transport chain", "id": "GO:0022904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022904", "evidence": [ { "database": "UniProtKB", "id": "F1SV23", "url": "https://www.uniprot.org/uniprotkb/F1SV23" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SV23-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 106, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SV23-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SV23" }, { "pdb_id": "7v2h", "pdb_chain": "h", "start_pos": 2, "end_pos": 106, "overlap": "0.99", "method": "Electron_Microscopy", "type": "experimental", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/7v2h.pdb", "url_external": "https://www.rcsb.org/structure/7v2h" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 4 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV24-1", "uniprot_ac": "F1SV24", "uniprot_id": "F1SV24_PIG", "mass": { "chemical_mass": 34079.0, "monoisotopic_mass": 34079.0 }, "refseq": { "ac": "NP_001231872", "name": "rhomboid-related protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231872" }, "gene_names": [ { "name": "RHBDL2", "type": "recommended", "evidence": [ { "id": "F1SV24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV24" } ] }, { "name": "RHBDL2", "type": "synonym", "evidence": [ { "id": "NP_001231872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231872" } ] } ], "protein_names": [ { "name": "Rhomboid-related protein 2", "type": "recommended", "evidence": [ { "id": "F1SV24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV24/entry#names_and_taxonomy" } ] }, { "name": "3.4.21.105", "type": "synonym", "evidence": [ { "id": "F1SV24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV24/entry#names_and_taxonomy" } ] }, { "name": "rhomboid-related protein 2", "type": "synonym", "evidence": [ { "id": "NP_001231872", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231872" } ] } ], "function": [ { "annotation": "Involved in regulated intramembrane proteolysis and the subsequent release of functional polypeptides from their membrane anchors. Known substrate: EFNB3.", "evidence": [ { "database": "UniProtKB", "id": "F1SV24", "url": "https://www.uniprot.org/uniprotkb/F1SV24#function" }, { "database": "UniProtKB", "id": "ARBA00058540", "url": "https://www.uniprot.org/uniprotkb/ARBA00058540#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV24", "url": "https://www.uniprot.org/uniprotkb/F1SV24" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RHBDL2", "url": "https://www.uniprot.org/uniprotkb/F1SV24", "locus": { "chromosome": "6", "start_pos": 94821775, "end_pos": 94864052, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003651", "url": "https://www.ensembl.org/id/ENSSSCG00000003651" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003651", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003651", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100514296", "url": "https://www.ncbi.nlm.nih.gov/gene/100514296", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR017213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022764", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022764", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051739", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051739", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514296", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514296", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VCCDQLM", "url": "https://omabrowser.org/oma/group/VCCDQLM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV24", "url": "https://www.orthodb.org/?gene=F1SV24", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45840", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45840", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45840:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45840:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01694", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01694", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231872", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231872", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SV24", "url": "https://www.uniprot.org/uniprotkb/F1SV24", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV24-1", "url": "https://www.uniprot.org/uniprotkb/F1SV24-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAHDVEIEEDVNLNMDRELKDELEEEKRMREDRAGKEPFKHNKVHRIVSKWMLPEPVRGTYLERANCLPPPVFIISISLAELVVFIYYAVWKPQKQWITLDTGILESPFIYTPEKREEAWRFISYMLVHAGVQHILGNLVMQLVLGIPLEMVHKGLRVGLVYLAGVIAGSLASSIFDPLKSLVGASGGVYALMGGYFMNVLVNFREMIPAFGIVRLLIIILIIALDMGFALYRRFFVPANGSPVSFAAHIAGGFAGMSIGYTVFSCFDKALLKDPRFWVAIAAYLACVLFAVFFNIFLSPAN", "length": 304, "header": "tr|F1SV24-1|F1SV24_PIG Isoform 1 of Rhomboid-related protein 2 OS=Sus scrofa OX=9823 GN=RHBDL2 PE=3 SV=3 CANONICAL=F1SV24-1" }, "isoforms": [ { "isoform_ac": "F1SV24-1", "url": "https://www.uniprot.org/uniprotkb/F1SV24/entry#F1SV24-1", "sequence": { "sequence": "MAAAHDVEIEEDVNLNMDRELKDELEEEKRMREDRAGKEPFKHNKVHRIVSKWMLPEPVRGTYLERANCLPPPVFIISISLAELVVFIYYAVWKPQKQWITLDTGILESPFIYTPEKREEAWRFISYMLVHAGVQHILGNLVMQLVLGIPLEMVHKGLRVGLVYLAGVIAGSLASSIFDPLKSLVGASGGVYALMGGYFMNVLVNFREMIPAFGIVRLLIIILIIALDMGFALYRRFFVPANGSPVSFAAHIAGGFAGMSIGYTVFSCFDKALLKDPRFWVAIAAYLACVLFAVFFNIFLSPAN", "length": 304, "header": "tr|F1SV24-1|F1SV24_PIG Isoform 1 of Rhomboid-related protein 2 OS=Sus scrofa OX=9823 GN=RHBDL2 PE=3 SV=3 CANONICAL=F1SV24-1" }, "locus": { "chromosome": "6", "start_pos": 94845085, "end_pos": 94823761, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004047.4", "url": "https://www.ensembl.org/id/ENSSSCT00000004047.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003956.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003956.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SV24", "url": "https://www.uniprot.org/uniprotkb/F1SV24" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514296", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514296", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FA31-1", "protein_name": "Rhomboid-related protein 2", "gene_name": "Rhbdl2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAAAHDVELESVNLNIEREGKAELEEEEKTREDREGKDFPRSRKVHSIVSKWMLPEPVRRTYLERANCLPPPLFIISISMAELAVFVYYAVWKPQKQWITLDTGILESPFTYRPDKREEAWRFISYMLVHAGVQHIMGNLLIQLVLGIPLEMVHKGLGVGLVYLAGVLAGSLASSIFDPLKYLVGASGGVYALMGGYFMNVILNFREMIPAFGIFRLLIIILIVASDMGFALYRRFFVPANGSPVSFAAHIAGGFAGMSIGYTVFSCFDKTLLKDPRFWIAIAAYAACLLFAVFFNIFLSPAN", "length": 303 }, "evidence": [ { "id": "F1SV24", "url": "https://omabrowser.org/oma/group/F1SV24/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0ABK0LN46-1", "protein_name": "Rhomboid-related protein 2", "gene_name": "Rhbdl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAAHEMEMESVNLNMEREGKEELEEEKMRGDGEGKDFPRGRKVHRIVSKWMLPEPVRRTYLERANCLPPPLFIVLISLAELAVFIYYAVWKPQKQWITLDTGILESPLTYRPEKREEAWRFISYMLVHAGVQHIVGNLFMQLVLGIPLEMVHKGLRVGLVYLAGVLAGSLASSIFDPLKSLVGASGGVYALMGGYFMNVIVNFREMIPALGIVRLLVIILIALVGSNELMEGELQDQQPAGQQSKARPGQREQNPAHCGDPRLHWASSLLVASDMGFALYRRFFVPANGSPVSFAAHIAGGFAGMSVGYTVFSCFDKTLLKDPRFWISIAAYVACLLFAVFFNIFLSPAN", "length": 351 }, "evidence": [ { "id": "F1SV24", "url": "https://omabrowser.org/oma/group/F1SV24/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A2AGA4-1", "protein_name": "Rhomboid-related protein 2", "gene_name": "Rhbdl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAVAHEMEMESVNLNMEREGKEEPEEEKMKGNGEGKDFPRSRKVHRIVSKWMLPEPVRRTYLERANCLPPPLFIILISLAELAVFIYYAVWKPQKQWITLDTGILESPLTYCPEKREEAWRFISYMLVHAGVQHIVGNLLMQIVLGIPLEMVHKGLRVGLVYLAGVLAGSLASSIFDPLKSLVGASGGVYALMGGYFMNVIVNFREMIPAFGIVRLLVIILIVASDMGFALYRRFFVPANGSPVSFAAHIAGGFAGMSIGYTVFSCFDKTLLKDPRFWIAIAAYVACLLFAVFFNIFLSPAN", "length": 302 }, "evidence": [ { "id": "F1SV24", "url": "https://omabrowser.org/oma/group/F1SV24/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NX52-1", "protein_name": "Rhomboid-related protein 2", "gene_name": "RHBDL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVHDLEMESMNLNMGREMKEELEEEEKMREDGGGKDRAKSKKVHRIVSKWMLPEKSRGTYLERANCFPPPVFIISISLAELAVFIYYAVWKPQKQWITLDTGILESPFIYSPEKREEAWRFISYMLVHAGVQHILGNLCMQLVLGIPLEMVHKGLRVGLVYLAGVIAGSLASSIFDPLRYLVGASGGVYALMGGYFMNVLVNFQEMIPAFGIFRLLIIILIIVLDMGFALYRRFFVPEDGSPVSFAAHIAGGFAGMSIGYTVFSCFDKALLKDPRFWIAIAAYLACVLFAVFFNIFLSPAN", "length": 303 }, "evidence": [ { "id": "F1SV24", "url": "https://omabrowser.org/oma/group/F1SV24/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W0F8-1", "protein_name": "rhomboid protease", "gene_name": "ru", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLLLSGAPSQGRRPKNRPLIGTVEEGEMPPSTVLQMPPAPLSSKSGLVLGVCCDQLMAVQPVQRASGAAATKSNSPDWGNHRAKHHEGSAAPFKWIPPFFIILATLLEVLVFLWVGADPPEDSLLVYRPDQRLQLWRFLSYALLHASWLHLGYNVLTQLLFGVPLELVHGSLRTGVIYMAGVLAGSLGTSVVDSEVFLVGASGGVYALLAAQLASLLLNFGQMRHGVIQLMAVILFVFCDLGYALYSRELAMHQLQTRPSVSYIAHMTGALAGISVGLLLLRQLDGGLRPRPLRWLALGVWCIFSAFGIAFNLVNTVTAQLLAEEEGQVIRQHLMNDLGMG", "length": 341 }, "evidence": [ { "id": "F1SV24", "url": "https://omabrowser.org/oma/group/F1SV24/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "serine-type endopeptidase activity", "id": "GO:0004252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004252", "evidence": [ { "database": "UniProtKB", "id": "F1SV24", "url": "https://www.uniprot.org/uniprotkb/F1SV24" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SV24", "url": "https://www.uniprot.org/uniprotkb/F1SV24" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F1SV24", "url": "https://www.uniprot.org/uniprotkb/F1SV24" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV24", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV24" }, { "id": "PF01694", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01694" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase S54 rhomboid", "eco_id": "ECO_0000259", "start_pos": 119, "end_pos": 267, "start_aa": "Glu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 242, "end_pos": 244 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV25-1", "uniprot_ac": "F1SV25", "uniprot_id": "F1SV25_PIG", "mass": { "chemical_mass": 58261.0, "monoisotopic_mass": 58261.0 }, "refseq": { "ac": "XP_020951641", "name": "gap junction alpha-9 protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951641" }, "gene_names": [ { "name": "GJA9", "type": "recommended", "evidence": [ { "id": "F1SV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV25" } ] }, { "name": "GJA9", "type": "synonym", "evidence": [ { "id": "XP_020951641", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951641" } ] } ], "protein_names": [ { "name": "Gap junction protein", "type": "recommended", "evidence": [ { "id": "F1SV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV25/entry#names_and_taxonomy" } ] }, { "name": "gap junction alpha-9 protein", "type": "synonym", "evidence": [ { "id": "XP_020951641", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951641" } ] } ], "function": [ { "annotation": "Structural component of the gap junction, a specialized intercellular structure consisting of a cluster of closely packed pairs of transmembrane channels, the connexons, that allow passage of small molecules and electrical signals between neighboring cells. Forms homotypic and heterotypic channels gated by transjunctional voltage. Involved in intercellular innate immune signaling. Mediates translocation of 2',3'-cGAMP and 2',5'-oligoadenylates (2-5A) second messengers from virus-infected cells to macrophages and uninfected neighboring cells to propagate and amplify the antiviral immune response.", "evidence": [ { "database": "UniProtKB", "id": "F1SV25", "url": "https://www.uniprot.org/uniprotkb/F1SV25#function" }, { "database": "UniProtKB", "id": "RU000630", "url": "https://www.uniprot.org/uniprotkb/RU000630#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV25", "url": "https://www.uniprot.org/uniprotkb/F1SV25" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GJA9", "url": "https://www.uniprot.org/uniprotkb/F1SV25", "locus": { "chromosome": "6", "start_pos": 94815600, "end_pos": 94817147, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003650", "url": "https://www.ensembl.org/id/ENSSSCG00000003650" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003650", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003650", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110261155", "url": "https://www.ncbi.nlm.nih.gov/gene/110261155", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013092", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013092", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019570", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019570", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038359", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038359", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110261155", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261155", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LWGQYKL", "url": "https://omabrowser.org/oma/group/LWGQYKL/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV25", "url": "https://www.orthodb.org/?gene=F1SV25", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11984", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11984", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11984:SF60", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11984:SF60", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00029", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00029", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-190861", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-190861", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020951641", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951641", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SV25", "url": "https://www.uniprot.org/uniprotkb/F1SV25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV25-1", "url": "https://www.uniprot.org/uniprotkb/F1SV25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGDWNFLGGILEEVHIHSTMIGKIWLTILFIFRMLVLGVAAEDVWNDEQSGFICNTEQPGCRNVCYDQAFPISLIRYWVLQVIFVSSPSLVYMGHALYRLRVLEKERQVKKAQLRGELEGVELEMPGDRKRLEQELYQLEQWKLNKAPLRGTLLCTYVIHIFTRSVVEVGFMIGQYLLYGFHLEPLYKCQGHPCPNIIDCFVSRPTEKTIFLLFMQSIATVSVFLNVLEICHLGFKKIKRGIWGQYKLKDKQNEFCTNKSKQNLAKYQNTSANSLKRLSSAPDYSLLVEKQTHRAVYPSLNSSVYQTDPDSHRGNDERGISNEQETVLSNKMCTLSTACGHLQNVSSSNKEDTHKISGKEVNGNQVRGKRESDSEDSKRNHYPRGYRSIPGDAIDLNDHTGQSPQTAFSLPANCTWKPKWFCATWGPSAENENQALPPKGNLKGQLRENPVRTLPPSPGDFQPPDIPDTPDSLGVLSFESELVRTCDNPAASPPQHSVSLTNNLISRRAPTDLQI", "length": 515, "header": "tr|F1SV25-1|F1SV25_PIG Isoform 1 of Gap junction protein OS=Sus scrofa OX=9823 GN=GJA9 PE=3 SV=2 CANONICAL=F1SV25-1" }, "isoforms": [ { "isoform_ac": "F1SV25-1", "url": "https://www.uniprot.org/uniprotkb/F1SV25/entry#F1SV25-1", "sequence": { "sequence": "MGDWNFLGGILEEVHIHSTMIGKIWLTILFIFRMLVLGVAAEDVWNDEQSGFICNTEQPGCRNVCYDQAFPISLIRYWVLQVIFVSSPSLVYMGHALYRLRVLEKERQVKKAQLRGELEGVELEMPGDRKRLEQELYQLEQWKLNKAPLRGTLLCTYVIHIFTRSVVEVGFMIGQYLLYGFHLEPLYKCQGHPCPNIIDCFVSRPTEKTIFLLFMQSIATVSVFLNVLEICHLGFKKIKRGIWGQYKLKDKQNEFCTNKSKQNLAKYQNTSANSLKRLSSAPDYSLLVEKQTHRAVYPSLNSSVYQTDPDSHRGNDERGISNEQETVLSNKMCTLSTACGHLQNVSSSNKEDTHKISGKEVNGNQVRGKRESDSEDSKRNHYPRGYRSIPGDAIDLNDHTGQSPQTAFSLPANCTWKPKWFCATWGPSAENENQALPPKGNLKGQLRENPVRTLPPSPGDFQPPDIPDTPDSLGVLSFESELVRTCDNPAASPPQHSVSLTNNLISRRAPTDLQI", "length": 515, "header": "tr|F1SV25-1|F1SV25_PIG Isoform 1 of Gap junction protein OS=Sus scrofa OX=9823 GN=GJA9 PE=3 SV=2 CANONICAL=F1SV25-1" }, "locus": { "chromosome": "6", "start_pos": 94817147, "end_pos": 94815603, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004046.2", "url": "https://www.ensembl.org/id/ENSSSCT00000004046.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003955.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003955.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SV25", "url": "https://www.uniprot.org/uniprotkb/F1SV25" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110261155", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110261155", "resource": "KEGG Pathway" }, { "id": "R-SSC-190861", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-190861", "resource": "Reactome", "description": "Gap junction assembly" } ], "orthologs": [ { "uniprot_canonical_ac": "F1N617-1", "protein_name": "Gap junction protein", "gene_name": "GJA9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGDWNFLGGILEEVHIHSTVIGKMWLTILFIFRMLVLGVAAEDVWNDEQSGFICNTEQPGCRNVCYDRAFPISLIRYWVLQVIFVSSPSLVYMGHALYRLRVLEKQRQMKKEQLRGELEEAELETPGDRRRLEEELCQLEQRKVNKVPLRGTLLCTYVIHIFTRSVVEVGFMIGQYLLYGFHLEPLFKCHGHPCPNTIDCFVSRPTEKTIFLLFMQSIATVSLFLNVLEIFHLGFKKIKRGLWGQYKLKDEHNEFCTKSKQNLAKYQNTSANSLKRLSSVPDYSLLVDKQTHTAGYPSLNPSAFQTDPDNHIGNDDKGILDEQETLLSEMCTFSTACGHLQNISSSNKEDTHKLSGKEVNGNQLRGKRETDGKDSKRNHYFKGHCSSPGDAIELNNHVGQSPQTAFSLPANCTWKPKWPRATRGPSAESENQALPPKGYLKGQLRESTTRILPPSQGDFQPLDIPDTPDSSGGLSFESKLVRTCSNPTACTPTHLVSLTNNLIGRRAPTDLQI", "length": 513 }, "evidence": [ { "id": "F1SV25", "url": "https://omabrowser.org/oma/group/F1SV25/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P57773-1", "protein_name": "Gap junction alpha-9 protein", "gene_name": "GJA9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDWNLLGDTLEEVHIHSTMIGKIWLTILFIFRMLVLGVAAEDVWNDEQSGFICNTEQPGCRNVCYDQAFPISLIRYWVLQVIFVSSPSLVYMGHALYRLRVLEEERQRMKAQLRVELEEVEFEMPRDRRRLEQELCQLEKRKLNKAPLRGTLLCTYVIHIFTRSVVEVGFMIGQYLLYGFHLEPLFKCHGHPCPNIIDCFVSRPTEKTIFLLFMQSIATISLFLNILEIFHLGFKKIKRGLWGKYKLKKEHNEFHANKAKQNVAKYQSTSANSLKRLPSAPDYNLLVEKQTHTAVYPSLNSSSVFQPNPDNHSVNDEKCILDEQETVLSNEISTLSTSCSHFQHISSNNNKDTHKIFGKELNGNQLMEKRETEGKDSKRNYYSRGHRSIPGVAIDGENNMRQSPQTVFSLPANCDWKPRWLRATWGSSTEHENRGSPPKGNLKGQFRKGTVRTLPPSQGDSQSLDIPNTADSLGGLSFEPGLVRTCNNPVCPPNHVVSLTNNLIGRRVPTDLQI", "length": 515 }, "evidence": [ { "id": "F1SV25", "url": "https://omabrowser.org/oma/group/F1SV25/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell-cell signaling", "id": "GO:0007267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007267", "evidence": [ { "database": "UniProtKB", "id": "F1SV25", "url": "https://www.uniprot.org/uniprotkb/F1SV25" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "connexin complex", "id": "GO:0005922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005922", "evidence": [ { "database": "UniProtKB", "id": "F1SV25", "url": "https://www.uniprot.org/uniprotkb/F1SV25" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "gap junction channel activity", "id": "GO:0005243", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005243", "evidence": [ { "database": "UniProtKB", "id": "F1SV25", "url": "https://www.uniprot.org/uniprotkb/F1SV25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 258, "end_pos": 260, "annotation": "n_glycosylation_sequon" }, { "start_pos": 269, "end_pos": 271, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 413, "end_pos": 415, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV25" }, { "id": "SM00037", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00037" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Connexin N-terminal", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 76, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV25" }, { "id": "SM01089", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Connexin cysteine-rich", "eco_id": "ECO_0000259", "start_pos": 167, "end_pos": 233, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 258, "end_pos": 260 }, { "start_pos": 269, "end_pos": 271 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 413, "end_pos": 415 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV49-1", "uniprot_ac": "F1SV49", "uniprot_id": "F1SV49_PIG", "mass": { "chemical_mass": 44766.0, "monoisotopic_mass": 44766.0 }, "refseq": { "ac": "XP_003482658", "name": "protein DDI1 homolog 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482658" }, "gene_names": [ { "name": "DDI1", "type": "recommended", "evidence": [ { "id": "F1SV49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV49" } ] }, { "name": "DDI1", "type": "synonym", "evidence": [ { "id": "XP_003482658", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482658" } ] } ], "protein_names": [ { "name": "DNA damage inducible 1 homolog 1", "type": "synonym", "evidence": [ { "id": "F1SV49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV49/entry#names_and_taxonomy" } ] }, { "name": "protein DDI1 homolog 1", "type": "synonym", "evidence": [ { "id": "XP_003482658", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482658" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV49", "url": "https://www.uniprot.org/uniprotkb/F1SV49" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DDI1", "url": "https://www.uniprot.org/uniprotkb/F1SV49", "locus": { "chromosome": "9", "start_pos": 34504921, "end_pos": 34503716, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014995", "url": "https://www.ensembl.org/id/ENSSSCG00000014995" } ] } } ], "crossref": [ { "id": "F1SV49", "url": "https://alphafold.ebi.ac.uk/entry/F1SV49", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014995", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014995", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01796", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01796", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd05479", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05479", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100522694", "url": "https://www.ncbi.nlm.nih.gov/gene/100522694", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019103", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019103", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033882", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033882", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100522694", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522694", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LYTADPF", "url": "https://omabrowser.org/oma/group/LYTADPF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV49", "url": "https://www.orthodb.org/?gene=F1SV49", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15397", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15397", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15397:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15397:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09668", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09668", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24669", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24669", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003482658", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003482658", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SV49", "url": "https://www.uniprot.org/uniprotkb/F1SV49", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV49-1", "url": "https://www.uniprot.org/uniprotkb/F1SV49-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLTVYCVRKDLSEATFSLQVSPDFELHNFRVLCELESGIPAEEIQIVYMERLLGDDHYSLGSYGLKDGDVVVLLQKENVGSRAPGRTSSLPQRDFPGTAVPGTSSSRHQHQHQHQRTQSVQQSRGMGSGEKMSSAQGLDSPALIRSMLLSNPHDLSLLKERNPALAEALLSGNLETFSQVLMEQQRERVLREQERFRLYSADPFDLEAQAKIEEEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIIRLVDRRWAGIAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEEQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFLPEGELPPCAKLVSGTGQDESSDKEVADTIKHSVMNSGRKKH", "length": 401, "header": "tr|F1SV49-1|F1SV49_PIG Isoform 1 of DNA damage inducible 1 homolog 1 OS=Sus scrofa OX=9823 GN=DDI1 PE=3 SV=3 CANONICAL=F1SV49-1" }, "isoforms": [ { "isoform_ac": "F1SV49-1", "url": "https://www.uniprot.org/uniprotkb/F1SV49/entry#F1SV49-1", "sequence": { "sequence": "MLLTVYCVRKDLSEATFSLQVSPDFELHNFRVLCELESGIPAEEIQIVYMERLLGDDHYSLGSYGLKDGDVVVLLQKENVGSRAPGRTSSLPQRDFPGTAVPGTSSSRHQHQHQHQRTQSVQQSRGMGSGEKMSSAQGLDSPALIRSMLLSNPHDLSLLKERNPALAEALLSGNLETFSQVLMEQQRERVLREQERFRLYSADPFDLEAQAKIEEEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIIRLVDRRWAGIAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEEQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFLPEGELPPCAKLVSGTGQDESSDKEVADTIKHSVMNSGRKKH", "length": 401, "header": "tr|F1SV49-1|F1SV49_PIG Isoform 1 of DNA damage inducible 1 homolog 1 OS=Sus scrofa OX=9823 GN=DDI1 PE=3 SV=3 CANONICAL=F1SV49-1" }, "locus": { "chromosome": "9", "start_pos": 34504918, "end_pos": 34503716, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016358.4", "url": "https://www.ensembl.org/id/ENSSSCT00000016358.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015919.3", "url": "https://www.ensembl.org/id/ENSSSCP00000015919.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SV49", "url": "https://www.uniprot.org/uniprotkb/F1SV49" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100522694", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100522694", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061I6Z1-1", "protein_name": "Protein DDI1 homolog 1", "gene_name": "Ddi1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLITVYCVRRDLTEATFSLQVSPDFELCNFRVLCELESGVPAEEIQFVYMEQLLTDDHCSLGTYGLKDGDMVVLLQKDNVGLRTPGRTPNQPRADFTGSAIPGTSSTRHHHHQRQQRIPSTQAHGLASGENMAYARDLNSPALIRSMLLSNPHDLSLLKERNPALAEALLSGSLETFSQVLMEQQRERALREQEMVRLYSADPFDQEAQARIEEEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDQRWAGVAKGVGTQRIVGRVHLAQIQIEGDFLQCSFSILEEQPMDILLGLDMLRRHQCSIDLKKNVLVIGTTGTQTHFLPEGELPLCARLVSGTVQEDSSDKEVPGNIIKHPVKGPGRKQH", "length": 401 }, "evidence": [ { "id": "F1SV49", "url": "https://omabrowser.org/oma/group/F1SV49/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0JPP7-1", "protein_name": "Protein DDI1 homolog 1", "gene_name": "Ddi1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVGPRPPGRAPNHPRTDFTGSGSAVPGTSSSRHPHPHQHHHHQHQRIPSTQQAHGLASGENMAFAQDLNSPALIRSMLLSNPHDLSLLKERNPALAEALLSGNLETFSQVLVEQQRERAMREQEMFRLYSADPFDQETQARIEEEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIMGRVHLAQIQIEGDFLQCSFSILEEQPMDILLGLDMLRRHQCSIDLKKNVLVIGTTGSQTHFLPEGELPLCAKLLSGAVQEDSSDKEVAGSIKHPVKGPGRKKH", "length": 408 }, "evidence": [ { "id": "F1SV49", "url": "https://omabrowser.org/oma/group/F1SV49/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MG01-1", "protein_name": "DNA damage inducible 1 homolog 1", "gene_name": "DDI1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLLTVYCVRRDLSEATFSLQVRPDFELHNFRVLCELESGIPAEETQIVYMERLLVNDHCSLGSYGLKDGDMVILLQKEAMRPRSPERAAGLCSMEPAGPALPGTSGSRPHQRAQSAQHSSRRGSGEKAGPGQGLDSPALVRSMLLSSPHDLSLLKERNPSLAEALLSGNLESFSQVLMEQQRERALREQERLRLFSADPFDLEAQAKIEEEIRQQNIEENMSIAMEEAPESFGQVAMLYINCRVNGHPLKAFVDSGAQMTIMNQVCAERCNIIRLVDRRWAGVAKGVGTQRILGRVHLAQIQIEGDFLQCSFSILEEQPMDMLLGLDMLRRHQCSIDLKRNVLVIGTTGTQTSFLPEGELPPCAKLVSGMGPEESSDKETANAIKHSVMDSGRKKH", "length": 396 }, "evidence": [ { "id": "F1SV49", "url": "https://omabrowser.org/oma/group/F1SV49/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8WTU0-1", "protein_name": "Protein DDI1 homolog 1", "gene_name": "DDI1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLITVYCVRRDLSEVTFSLQVSPDFELRNFKVLCEAESRVPVEEIQIIHMERLLIEDHCSLGSYGLKDGDIVVLLQKDNVGPRAPGRAPNQPRVDFSGIAVPGTSSSRPQHPGQQQQRTPAAQRSQGLASGEKVAGLQGLGSPALIRSMLLSNPHDLSLLKERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIEEEIRQQNIEENMNIAIEEAPESFGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFLPEGELPLCSRMVSGQDESSDKEITHSVMDSGRKEH", "length": 396 }, "evidence": [ { "id": "F1SV49", "url": "https://omabrowser.org/oma/group/F1SV49/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DAF3-1", "protein_name": "Protein DDI1 homolog 1", "gene_name": "Ddi1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVGLRTPGRTPNHPRADFTGSGSAVPGTSSSRHPHQHQHHYHHHQRIPSTQQAHGLASGENMTFAQELDSPALIRSMLLSNPHDLSLLKERNPALAEALLSGNLETFSQVLMEQQRERTLREQEMFRLYSTNPFDQETQARIEEEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWGGVAKGVGTQRIMGRVHLAQIQIEGDFLQCSFSILEEQPMDILLGLDMLRRHQCSIDLKKNVLVIGTTGSQTHFLPEGELPLCAKLLSGTVQEESSDREVGGTIKHPVKGPGRKKH", "length": 408 }, "evidence": [ { "id": "F1SV49", "url": "https://omabrowser.org/oma/group/F1SV49/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SV49", "url": "https://www.uniprot.org/uniprotkb/F1SV49" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of protein stability", "id": "GO:0031647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031647", "evidence": [ { "database": "UniProtKB", "id": "F1SV49", "url": "https://www.uniprot.org/uniprotkb/F1SV49" } ], "pmid": "" }, { "name": "proteasomal protein catabolic process", "id": "GO:0010498", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010498", "evidence": [ { "database": "UniProtKB", "id": "F1SV49", "url": "https://www.uniprot.org/uniprotkb/F1SV49" } ], "pmid": "" }, { "name": "regulation of DNA stability", "id": "GO:0097752", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097752", "evidence": [ { "database": "UniProtKB", "id": "F1SV49", "url": "https://www.uniprot.org/uniprotkb/F1SV49" } ], "pmid": "" }, { "name": "cellular response to hydroxyurea", "id": "GO:0072711", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072711", "evidence": [ { "database": "UniProtKB", "id": "F1SV49", "url": "https://www.uniprot.org/uniprotkb/F1SV49" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "aspartic-type endopeptidase activity", "id": "GO:0004190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004190", "evidence": [ { "database": "UniProtKB", "id": "F1SV49", "url": "https://www.uniprot.org/uniprotkb/F1SV49" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SV49-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 401, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SV49-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SV49" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SV49", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV49" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 81, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV59-1", "uniprot_ac": "F1SV59", "uniprot_id": "F1SV59_PIG", "mass": { "chemical_mass": 50033.0, "monoisotopic_mass": 50033.0 }, "refseq": {}, "gene_names": [ { "name": "ADPRS", "type": "recommended", "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ] } ], "protein_names": [ { "name": "ADP-ribosylhydrolase ARH3", "type": "recommended", "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59/entry#names_and_taxonomy" } ] }, { "name": "3.2.1.143", "type": "synonym", "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59/entry#names_and_taxonomy" } ] }, { "name": "ADP-ribose glycohydrolase ARH3", "type": "synonym", "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59/entry#names_and_taxonomy" } ] }, { "name": "ADP-ribosylhydrolase 3", "type": "synonym", "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59/entry#names_and_taxonomy" } ] }, { "name": "O-acetyl-ADP-ribose deacetylase ARH3", "type": "synonym", "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59/entry#names_and_taxonomy" } ] }, { "name": "Poly(ADP-ribose) glycohydrolase ARH3", "type": "synonym", "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59/entry#names_and_taxonomy" } ] }, { "name": "[Protein ADP-ribosylarginine] hydrolase-like protein 2", "type": "synonym", "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59/entry#names_and_taxonomy" } ] }, { "name": "[Protein ADP-ribosylserine] hydrolase", "type": "synonym", "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ADPRS", "url": "https://www.uniprot.org/uniprotkb/F1SV59", "locus": { "chromosome": "6", "start_pos": 92244514, "end_pos": 92237980, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003634", "url": "https://www.ensembl.org/id/ENSSSCG00000003634" } ] } } ], "crossref": [ { "id": "F1SV59", "url": "https://alphafold.ebi.ac.uk/entry/F1SV59", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003634", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003634", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR005502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050792", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050792", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16222", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16222", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16222:SF24", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16222:SF24", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03747", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03747", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110362", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110362", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "68792", "url": "https://www.rhea-db.org/rhea/68792", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV59-1", "url": "https://www.uniprot.org/uniprotkb/F1SV59-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGGCPGRAGVPGHIKASEPVTLQSGSVPTPGDPLVDVPSDCDALSRGGGWGLKPEAEPNRTRAAGPPRSLARGNYDSAPRGVAVGPGKRRRWARVGRTGSGCGSARMAVAAMTAAAAASGGAGAARSLSRFRGCLAGALLGDCVGAVYEARDTVDLTSVLRQVQDLEPDPGSAGSPRTEALCYTDDTAMAKALVQSLLAKEAFDEVDMAHRFAQEYKKDPDRGYGAGVITVFRKLLNPKCRDVFEPARAQFNGKGSYGNGGAMRVAGISLAYNSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLEQLLGHMEELESDAQSKSDARELGMEECPYSSRLKKIGELLEQDSVTREEVVSELGNGIAAFESVPTAIYCFLRCMEPDPEIPSAFNNLQRTLIYSISLGGDTDTIATMAGAIAGAYYGMEQVPESWQQSCEGYEETDVLAQSLHRVFQKSL", "length": 473, "header": "tr|F1SV59-1|F1SV59_PIG Isoform 1 of ADP-ribosylhydrolase ARH3 OS=Sus scrofa OX=9823 GN=ADPRS PE=1 SV=4 CANONICAL=F1SV59-1" }, "isoforms": [ { "isoform_ac": "F1SV59-1", "url": "https://www.uniprot.org/uniprotkb/F1SV59/entry#F1SV59-1", "sequence": { "sequence": "MSGGCPGRAGVPGHIKASEPVTLQSGSVPTPGDPLVDVPSDCDALSRGGGWGLKPEAEPNRTRAAGPPRSLARGNYDSAPRGVAVGPGKRRRWARVGRTGSGCGSARMAVAAMTAAAAASGGAGAARSLSRFRGCLAGALLGDCVGAVYEARDTVDLTSVLRQVQDLEPDPGSAGSPRTEALCYTDDTAMAKALVQSLLAKEAFDEVDMAHRFAQEYKKDPDRGYGAGVITVFRKLLNPKCRDVFEPARAQFNGKGSYGNGGAMRVAGISLAYNSVQDVQKFARLSAQLTHASSLGYNGAILQALAVHLALQGESSSEHFLEQLLGHMEELESDAQSKSDARELGMEECPYSSRLKKIGELLEQDSVTREEVVSELGNGIAAFESVPTAIYCFLRCMEPDPEIPSAFNNLQRTLIYSISLGGDTDTIATMAGAIAGAYYGMEQVPESWQQSCEGYEETDVLAQSLHRVFQKSL", "length": 473, "header": "tr|F1SV59-1|F1SV59_PIG Isoform 1 of ADP-ribosylhydrolase ARH3 OS=Sus scrofa OX=9823 GN=ADPRS PE=1 SV=4 CANONICAL=F1SV59-1" }, "locus": { "chromosome": "6", "start_pos": 92243972, "end_pos": 92238179, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004030.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004030.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003939.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003939.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 30, "start_aa": "Thr", "end_pos": 30, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr30", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-110362", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110362", "resource": "Reactome", "description": "POLB-Dependent Long Patch Base Excision Repair" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "poly(ADP-ribose) glycohydrolase activity", "id": "GO:0004649", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004649", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "O-acetyl-ADP-ribose deacetylase activity", "id": "GO:0061463", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061463", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "ADP-ribosylserine hydrolase activity", "id": "GO:0140292", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140292", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "mitochondrial matrix", "id": "GO:0005759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005759", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "site of DNA damage", "id": "GO:0090734", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090734", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "DNA repair", "id": "GO:0006281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006281", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "negative regulation of necroptotic process", "id": "GO:0060546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060546", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "cellular response to superoxide", "id": "GO:0071451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071451", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" }, { "name": "peptidyl-serine ADP-deribosylation", "id": "GO:0140290", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140290", "evidence": [ { "database": "UniProtKB", "id": "F1SV59", "url": "https://www.uniprot.org/uniprotkb/F1SV59" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "68792", "name": "", "equation": "alpha-NAD(+) + H2O = ADP-D-ribose + nicotinamide + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "68792", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/68792" } ] }, { "id": "R-SSC-8952903", "name": "ADPRHL2 hydrolyses poly(ADP-ribose)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "mitochondrial matrix", "input_participant_list": [], "output_participant_list": [ "R-ALL-8952905", "R-ALL-8952909" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8952903", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8952903" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-8952905", "participant_name": "ADP-ribose [mitochondrial matrix]", "crossref": [ { "id": "ZINC000017654550", "database": "ZINC", "url": "" }, { "id": "ZINC000014880207", "database": "ZINC", "url": "" }, { "id": "57967", "database": "ChEBI", "url": "" } ] }, { "participant_id": "R-ALL-8952909", "participant_name": "poly(ADP-ribose) [mitochondrial matrix]", "crossref": [ { "id": "57967", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SV59-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 473, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SV59-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SV59" } ], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59#function" }, { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59" }, { "id": "PIRSR605502-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605502-1" } ], "binding_site_uniprot": 185, "amino_acid": "Thr", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 185, "end_pos": 185, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59#function" }, { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59" }, { "id": "PIRSR605502-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605502-1" } ], "binding_site_uniprot": 186, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 186, "end_pos": 186, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59#function" }, { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59" }, { "id": "PIRSR605502-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605502-1" } ], "binding_site_uniprot": 187, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 187, "end_pos": 187, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59#function" }, { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59" }, { "id": "PIRSR605502-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605502-1" } ], "binding_site_uniprot": 423, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 423, "end_pos": 423, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59#function" }, { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59" }, { "id": "PIRSR605502-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605502-1" } ], "binding_site_uniprot": 425, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 425, "end_pos": 425, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59#function" }, { "id": "F1SV59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV59" }, { "id": "PIRSR605502-1", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR605502-1" } ], "binding_site_uniprot": 426, "amino_acid": "Thr", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0000256", "start_pos": 426, "end_pos": 426, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 30 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SV60-1", "uniprot_ac": "F1SV60", "uniprot_id": "F1SV60_PIG", "mass": { "chemical_mass": 49899.0, "monoisotopic_mass": 49899.0 }, "refseq": { "ac": "XP_003127835", "name": "tektin-2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127835" }, "gene_names": [ { "name": "TEKT2", "type": "recommended", "evidence": [ { "id": "F1SV60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ] }, { "name": "TEKT2", "type": "synonym", "evidence": [ { "id": "XP_003127835", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127835" } ] } ], "protein_names": [ { "name": "Tektin", "type": "recommended", "evidence": [ { "id": "F1SV60", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SV60/entry#names_and_taxonomy" } ] }, { "name": "tektin-2", "type": "synonym", "evidence": [ { "id": "XP_003127835", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127835" } ] } ], "function": [ { "annotation": "Microtubule inner protein (MIP) part of the dynein-decorated doublet microtubules (DMTs) in cilia and flagellar axoneme. Forms filamentous polymers in the walls of ciliary and flagellar microtubules. Required for normal sperm mobility.", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60#function" }, { "database": "UniProtKB", "id": "RU367040", "url": "https://www.uniprot.org/uniprotkb/RU367040#function" }, { "database": "UniProtKB", "id": "ARBA00046197", "url": "https://www.uniprot.org/uniprotkb/ARBA00046197#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TEKT2", "url": "https://www.uniprot.org/uniprotkb/F1SV60", "locus": { "chromosome": "6", "start_pos": 92237900, "end_pos": 92233586, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003633", "url": "https://www.ensembl.org/id/ENSSSCG00000003633" } ] } } ], "crossref": [ { "id": "ENSSSCG00000003633", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003633", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100525228", "url": "https://www.ncbi.nlm.nih.gov/gene/100525228", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "9CPC", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CPC&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR000435", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000435", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048256", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048256", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100525228", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525228", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FDHRGKM", "url": "https://omabrowser.org/oma/group/FDHRGKM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SV60", "url": "https://www.orthodb.org/?gene=F1SV60", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19960", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19960", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19960:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19960:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00009cpc", "url": "https://www.rcsb.org/structure/pdb_00009cpc", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CPC", "url": "https://www.rcsb.org/structure/9CPC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF03148", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03148", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003127835", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003127835", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SV60-1", "url": "https://www.uniprot.org/uniprotkb/F1SV60-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATLSVKPSQRFRLPDWHTNSYLLSTNAERQRDASHQIRQEARVLRNETNNQTIWDEHDNRTRLAERIDTVNRWKEMLDKCLTDLDAEIEALTQMKESAEQNLQAKNLPLDVAIECLTLRDCRRDIDVVKDPVEEELHKEVEVIEATKKALQQKISQAFEKLCLLQEARQQLNADHRGKMETLDIDRGCLSLNLKSPNISLKINPTRVPSGSTTLQQWDDFSQFNKNRAEAEMKGAVELREAIALTIAETNNELEAQRVATEFAFRKRLREMEKVYSELKWQEKNTLEEIAELQEDIRHLEEDLRRKLQNLKLCHTRLETRTYRPNVELCRDQAQFGLTDEVHQLEATIAALKQKLAQAQDALDALYKHLARLQADIACKANSMLLDTKCMDTRRKLTVPAEKFVPEVDTFTRTTNRTLSPLKTCQLELT", "length": 430, "header": "tr|F1SV60-1|F1SV60_PIG Isoform 1 of Tektin OS=Sus scrofa OX=9823 GN=TEKT2 PE=1 SV=1 CANONICAL=F1SV60-1" }, "isoforms": [ { "isoform_ac": "F1SV60-1", "url": "https://www.uniprot.org/uniprotkb/F1SV60/entry#F1SV60-1", "sequence": { "sequence": "MATLSVKPSQRFRLPDWHTNSYLLSTNAERQRDASHQIRQEARVLRNETNNQTIWDEHDNRTRLAERIDTVNRWKEMLDKCLTDLDAEIEALTQMKESAEQNLQAKNLPLDVAIECLTLRDCRRDIDVVKDPVEEELHKEVEVIEATKKALQQKISQAFEKLCLLQEARQQLNADHRGKMETLDIDRGCLSLNLKSPNISLKINPTRVPSGSTTLQQWDDFSQFNKNRAEAEMKGAVELREAIALTIAETNNELEAQRVATEFAFRKRLREMEKVYSELKWQEKNTLEEIAELQEDIRHLEEDLRRKLQNLKLCHTRLETRTYRPNVELCRDQAQFGLTDEVHQLEATIAALKQKLAQAQDALDALYKHLARLQADIACKANSMLLDTKCMDTRRKLTVPAEKFVPEVDTFTRTTNRTLSPLKTCQLELT", "length": 430, "header": "tr|F1SV60-1|F1SV60_PIG Isoform 1 of Tektin OS=Sus scrofa OX=9823 GN=TEKT2 PE=1 SV=1 CANONICAL=F1SV60-1" }, "locus": { "chromosome": "6", "start_pos": 92237810, "end_pos": 92234441, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004029.3", "url": "https://www.ensembl.org/id/ENSSSCT00000004029.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003938.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003938.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural diversity of axonemes across mammalian motile cilia.", "journal": "Nature", "date": "2025", "authors": "Leung Miguel Ricardo, Sun Chen, Zeng Jianwei, Anderson Jacob R, Niu Qingwei, Huang Wei, Noteborn Willem E M, Brown Alan, Zeev-Ben-Mordehai Tzviya, Zhang Rui", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "reference": [ { "type": "PubMed", "id": "39743588", "url": "https://glygen.org/publication/PubMed/39743588" } ] } ], "pathway": [ { "id": "ssc:100525228", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100525228", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q2T9Q6-1", "protein_name": "Tektin-2", "gene_name": "TEKT2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MATLSVKPSPRFRLPDWQTNSYLLSTNAERQRDASHQIRQEARVLRNETNNQTIWDEHDNRTRLAERIDTVSRWKEMLDKCLTDLDAEIDALAQMKESAEQNLQAKNLPLDVAIECLTLRESRRDIDVVKDPVEEELHKEVEVIEATKKALQQKISQAFEKLFLLQEARQRLNSDHRGKMETLDIDRGCLSLNLTSPNISLKINPTRVPNGSTSLQQWDDLSRFNKDHGEAEMKKAIELREAIALTIAETNNELEAQRVATEFAFRKRLREMEKLYSELKWQEKNTLEEIAELHEDIRHLEEDLRRKLQNLKLCHTRLEARTYRPNVELCRDQAQYGLTDEVHQLEATIAALKQKLAQAQDALDALYKHLARLQADIACKANSMLLDTKCMDTRRKLTVPAEKFVPEVDTFTRTTNRTLSPLKTCQLELA", "length": 430 }, "evidence": [ { "id": "F1SV60", "url": "https://omabrowser.org/oma/group/F1SV60/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6AYM2-1", "protein_name": "Tektin-2", "gene_name": "Tekt2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MATLSLKPSQRYRLSDWLTNSYLLSTNAERQRDASHQIRQEARILRNETNNQTVWDEHDNRTRLAERIDTVNRWKEMLDKCLTDLDAEIDSLTQAKESVEQSLQAKNLPLDVAIECLTLRESRRDIDVVKDPVEEELMKEVEVIEATKKVLQEKISQAFQHLCLLQEIRQQLNSDHRDKMETLEIDRGCLSLNLTAPNLSLKVNPTRVPKDSTTLQEWDDFTRFNKNRADTEMKASIELRETIALAIAQTNNELEAQRVATEFTFRKRLREMESLYSELKWQEKNTLEEIAELQADIRRLEEDLRRKMMNLKLAHTRLESRTYRPNVELCRDQTQYGLIDEVHQLEATISIMKQKLAQTQDALDALFKHLARIQADIACKTNTMLLDTKCMDIRRKLTVPAEKFVPQVDTFTRTTNRTLSPLKTCQLELN", "length": 430 }, "evidence": [ { "id": "F1SV60", "url": "https://omabrowser.org/oma/group/F1SV60/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q922G7-1", "protein_name": "Tektin-2", "gene_name": "Tekt2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATLSFKPSERYRLSDWRTNSYLLSTNAERQRDASHQIRQEARILRNETNNQIVWDEHDNRTRLAERIDTVNRWKETLDKCLTDLDAEIDSLAQAKESAEQNLQAKNLPLDVAIECLTLRESRRDIDVVRDPVEEELLKEVEVIEATKKVLQEKISQAFQHLCLLQEIRQQLNSDHRDKMETLEIDRGCLSLNLTSPNISLKVNPTRIPKDSTTLQQWDEFTRFNKNRAEAEMKASIELREAIALAIAQTNNELDAQRVATEFTFRKRLREMESFYSELKWQEKNTLEEIAELQGDIRRLEEDLRRKMMNLKLAHTRLESRTYRSNVELCRDQTQYGLIDEVHQLEATINTMKQKLAQTQNALDALFKHLARIQADIACKTNTLLLDTKCMDTRRKLTVPAEKFVPQVDTFTRTTNRTLSPLKICQLELT", "length": 430 }, "evidence": [ { "id": "F1SV60", "url": "https://omabrowser.org/oma/group/F1SV60/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9UIF3-1", "protein_name": "Tektin-2", "gene_name": "TEKT2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATLSVKPSRRFQLPDWHTNSYLLSTNAQLQRDASHQIRQEARVLRNETNNQTIWDEHDNRTRLVERIDTVNRWKEMLDKCLTDLDAEIDALTQMKESAEQNLQAKNLPLDVAIECLTLRESRRDIDVVKDPVEDELHKEVEVIEATKKALQQKVSQAFEQLCLLQEVQQQLNSDHRGKMETLEIDRGCLSLNLRSPNISLKVDPTRVPDGSTTLQQWDDFSRFNKDRAEAEMKAATELREATALTIAETNNELEAQRVATEFAFRKRLREMEKVYSELKWQEKNTLEEIAELQEDIRHLEEDLRTKLLSLKLSHTRLEARTYRPNVELCRDQAQYGLTDEVHQLEATIAALKQKLAQAQDALDALCKHLARLQADIACKANSMLLDTKCMDTRRKLTVPAERFVPEVDTFTRTTNSTLSPLKSCQLELA", "length": 430 }, "evidence": [ { "id": "F1SV60", "url": "https://omabrowser.org/oma/group/F1SV60/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9W1V2-1", "protein_name": "Tektin", "gene_name": "Dmel\\CG3085", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAFRSVVTMEKPLQHISLTDWYARVNQMRNVADARRSDAFAIRHSSRSLRNETRIEGDWANYETNEALTDRISELNRWRDIISKSFEKIEREIFMLQEEKNATERELEALAGPISVIAECLTIRDGRLGSEITYDEADTEIKNELVVLENNQRLLADRCQKAWEKLNRLEEVRFKIGLEIEFKVEAVQLDNSQLALDRNSANISYKPDPTRNPKNSCSYESWLENVKNIKLLAENELADTYAIREALFVCREKARNMLQSQQERAEHTIRKRIFETQRARNELEWQQLKMKEEMEKAMCEIRTSENALRDKTDALKLAETRLENRAQRSGMELCMDQAHDMLCLEVEKLREIRRRLQVKIDESKTNFSLLEEHGKRIDVDLENKQHSLMTDIRALDLRMRLRGGEFGSKVANASQTDRNITLTRMENEIPKD", "length": 432 }, "evidence": [ { "id": "F1SV60", "url": "https://omabrowser.org/oma/group/F1SV60/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cilium movement involved in cell motility", "id": "GO:0060294", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060294", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "pmid": "" }, { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "pmid": "" }, { "name": "sperm principal piece", "id": "GO:0097228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097228", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "pmid": "" }, { "name": "sperm midpiece", "id": "GO:0097225", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097225", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "pmid": "" }, { "name": "sperm head-tail coupling apparatus", "id": "GO:0120212", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120212", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "pmid": "" }, { "name": "axonemal A tubule inner sheath", "id": "GO:0160111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160111", "evidence": [ { "database": "UniProtKB", "id": "F1SV60", "url": "https://www.uniprot.org/uniprotkb/F1SV60" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 198, "end_pos": 200, "annotation": "n_glycosylation_sequon" }, { "start_pos": 416, "end_pos": 418, "annotation": "n_glycosylation_sequon" }, { "start_pos": 47, "end_pos": 49, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 198, "end_pos": 200 }, { "start_pos": 416, "end_pos": 418 }, { "start_pos": 47, "end_pos": 49 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SVA3-1", "uniprot_ac": "F1SVA3", "uniprot_id": "F1SVA3_PIG", "mass": { "chemical_mass": 49414.0, "monoisotopic_mass": 49414.0 }, "refseq": { "ac": "XP_020951430", "name": "ornithine decarboxylase-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951430" }, "gene_names": [ { "name": "LOC100520618", "type": "recommended", "evidence": [ { "id": "F1SVA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" } ] }, { "name": "LOC100520618", "type": "synonym", "evidence": [ { "id": "XP_020951430", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951430" } ] } ], "protein_names": [ { "name": "Ornithine decarboxylase", "type": "recommended", "evidence": [ { "id": "F1SVA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVA3/entry#names_and_taxonomy" } ] }, { "name": "ornithine decarboxylase-like", "type": "synonym", "evidence": [ { "id": "XP_020951430", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951430" } ] } ], "function": [ { "annotation": "Catalyzes the first and rate-limiting step of polyamine biosynthesis that converts ornithine into putrescine, which is the precursor for the polyamines, spermidine and spermine. Polyamines are essential for cell proliferation and are implicated in cellular processes, ranging from DNA replication to apoptosis.", "evidence": [ { "database": "UniProtKB", "id": "F1SVA3", "url": "https://www.uniprot.org/uniprotkb/F1SVA3#function" }, { "database": "UniProtKB", "id": "ARBA00037173", "url": "https://www.uniprot.org/uniprotkb/ARBA00037173#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SVA3", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100520618", "url": "https://www.uniprot.org/uniprotkb/F1SVA3", "locus": {} } ], "crossref": [ { "id": "F1SVA3", "url": "https://alphafold.ebi.ac.uk/entry/F1SVA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003599", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003599", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00622", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00622", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100520618", "url": "https://www.ncbi.nlm.nih.gov/gene/100520618", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000183", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000183", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002433", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002433", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022644", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022644", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022653", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022653", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022657", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022657", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520618", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520618", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SFDCASQ", "url": "https://omabrowser.org/oma/group/SFDCASQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SVA3", "url": "https://www.orthodb.org/?gene=F1SVA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11482", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11482", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11482:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11482:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00278", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00278", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02784", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02784", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020951430", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020951430", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SVA3", "url": "https://www.uniprot.org/uniprotkb/F1SVA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SVA3-1", "url": "https://www.uniprot.org/uniprotkb/F1SVA3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEQCLAEGLGGVLGMSAPVGTSKESGESPGSMWPKDLILLEPGETAWQVVLKKIRELSDGDVQDPFMVANLDVLPRRHQLFHQALPRVSPFYAVKCNNNPWVLRVLAALGTGFDCASQGELEQVLGLGVPPSRIIYANPCKPVSHILYAAHHGVQLLTFDSEEELIKVAQHYPGARLVLRLWTQDSESIFSLSTKFGARLELCEHLLKSARDLGVAVVGTSFHVGSSCQTPNSFKQAIADCRCLFEMGLRIGHDMNFLDIGGGFPGEEGLDPKFEEMAGVINATLAQDFPEGSGVEIIAEPGRFYAAPVCTIAVNIIAKKAVVQPGGHRKLLYYLNDGYYGDFRVFLRDPEPKIPIVVKELGPEPPLFSCILFGPTCDAFDKLFLEELQLPELNVGDWLVFPTMGAYTNVMTSTFNGFPPASICCTVGPELRSLLESALQTGTWPEWRRF", "length": 451, "header": "tr|F1SVA3-1|F1SVA3_PIG Isoform 1 of Ornithine decarboxylase OS=Sus scrofa OX=9823 GN=LOC100520618 PE=3 SV=3 CANONICAL=F1SVA3-1" }, "isoforms": [ { "isoform_ac": "F1SVA3-1", "url": "https://www.uniprot.org/uniprotkb/F1SVA3/entry#F1SVA3-1", "sequence": { "sequence": "MSEQCLAEGLGGVLGMSAPVGTSKESGESPGSMWPKDLILLEPGETAWQVVLKKIRELSDGDVQDPFMVANLDVLPRRHQLFHQALPRVSPFYAVKCNNNPWVLRVLAALGTGFDCASQGELEQVLGLGVPPSRIIYANPCKPVSHILYAAHHGVQLLTFDSEEELIKVAQHYPGARLVLRLWTQDSESIFSLSTKFGARLELCEHLLKSARDLGVAVVGTSFHVGSSCQTPNSFKQAIADCRCLFEMGLRIGHDMNFLDIGGGFPGEEGLDPKFEEMAGVINATLAQDFPEGSGVEIIAEPGRFYAAPVCTIAVNIIAKKAVVQPGGHRKLLYYLNDGYYGDFRVFLRDPEPKIPIVVKELGPEPPLFSCILFGPTCDAFDKLFLEELQLPELNVGDWLVFPTMGAYTNVMTSTFNGFPPASICCTVGPELRSLLESALQTGTWPEWRRF", "length": 451, "header": "tr|F1SVA3-1|F1SVA3_PIG Isoform 1 of Ornithine decarboxylase OS=Sus scrofa OX=9823 GN=LOC100520618 PE=3 SV=3 CANONICAL=F1SVA3-1" }, "locus": { "chromosome": "6", "start_pos": 88059947, "end_pos": 88048202, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003994.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003994.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003903.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003903.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SVA3", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520618", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520618", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "F1LVE6-1", "protein_name": "Antizyme inhibitor 2", "gene_name": "Ldc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPSEGRREPLGVTESLWPSEPITLGPETSARQLVLKKIQDLSISGHQDPFMVADLDVLASRHQTFLQALPRVWPFYAVKCNNRPSLLLVLAALGTGFDCASQGELEQVLGLGVAPSRIIFANPCKAVSHIQYAARCGVQLLTFDSEEELTKLARHHPGARLILRIQTLGGRSTFPLHTKFGARLLACGRLLQVARELGLAVVGASFHVGSDCHTPQSYRQAIADCHRVFEMGCKAGHQMSLLDLGGGFPGIEGSEAKFEEMARVVNAALAQYFPEGTGVEVIAEPGRFYAESVCTAAVNIIAKKASLEPGGHRKLAYYLNEGHYGAFRIFLRDPVPRIPIVVKELPSDPHLFPCTLYGPTCDAFDRLFSTEVQLPELDVGDWLVFPDMGAYRSTMSSTFNGFPITTVYDAMSPQLRSLLETVP", "length": 425 }, "evidence": [ { "id": "F1SVA3", "url": "https://omabrowser.org/oma/group/F1SVA3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MXF0-1", "protein_name": "Antizyme inhibitor 2-like", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLKLHLAEGLVGVSGVSIPIGNSKESKESPGSTWPKDIIALEPGETAWDVVLKKIKELSDSPSLSLSLSWRDCRHAFMVADLDVLASRHQVFRQALPRVSPFYVVKCNSSPWMLRVLAALGTSFDCSSQGELEQVLDLGVAPSRIVYANACKPVSHIRFASLHGVKLLVFNSEEELIKVAQHHPGARLVLWWTQDSDSIFPLSSKFGARLEVCEHLLESARDLGLAVVGTSFHVGSRCQTPRNFMKAIVDCRRVFEMGSSIGHDMSLLDIRGGFSREEGSDPEFEEVAGVINAALAQDFPEGSGVEVIAEPGRFYATFVCTTAVNIIAKKAVLEPRGRRKLLYYLNDGHYGTFRIFPRESEPRMPIMVKELSPKLSLFPCTLFGPTCDAFDKLFLKEVQLPELDVGDWLVFPFMGAYTSVLSSTFSGLSPTSICYAVGPELRSLLETTP", "length": 449 }, "evidence": [ { "id": "F1SVA3", "url": "https://omabrowser.org/oma/group/F1SVA3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SVA3", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of protein catabolic process", "id": "GO:0042177", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042177", "evidence": [ { "database": "UniProtKB", "id": "F1SVA3", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" } ], "pmid": "" }, { "name": "putrescine biosynthetic process from arginine, via ornithine", "id": "GO:0033387", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033387", "evidence": [ { "database": "UniProtKB", "id": "F1SVA3", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" } ], "pmid": "" }, { "name": "positive regulation of polyamine transmembrane transport", "id": "GO:1902269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902269", "evidence": [ { "database": "UniProtKB", "id": "F1SVA3", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "carboxy-lyase activity", "id": "GO:0016831", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016831", "evidence": [ { "database": "UniProtKB", "id": "F1SVA3", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 283, "end_pos": 285, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SVA3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 451, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SVA3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SVA3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SVA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" }, { "id": "PF00278", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00278" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Orn/DAP/Arg decarboxylase 2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 309, "end_pos": 406, "start_aa": "Pro", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "F1SVA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVA3" }, { "id": "PF02784", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02784" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Orn/DAP/Arg decarboxylase 2 N-terminal", "eco_id": "ECO_0000259", "start_pos": 75, "end_pos": 308, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 283, "end_pos": 285 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SVB2-1", "uniprot_ac": "F1SVB2", "uniprot_id": "F1SVB2_PIG", "mass": { "chemical_mass": 67207.0, "monoisotopic_mass": 67207.0 }, "refseq": { "ac": "XP_003124992", "name": "all-trans-retinol 13,14-reductase", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124992" }, "gene_names": [ { "name": "RETSAT", "type": "recommended", "evidence": [ { "id": "F1SVB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB2" } ] }, { "name": "RETSAT", "type": "synonym", "evidence": [ { "id": "XP_003124992", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124992" } ] } ], "protein_names": [ { "name": "All-trans-retinol 13,14-reductase", "type": "recommended", "evidence": [ { "id": "F1SVB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB2/entry#names_and_taxonomy" } ] }, { "name": "1.3.99.23", "type": "synonym", "evidence": [ { "id": "F1SVB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB2/entry#names_and_taxonomy" } ] }, { "name": "All-trans-13,14-dihydroretinol saturase", "type": "synonym", "evidence": [ { "id": "F1SVB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB2/entry#names_and_taxonomy" } ] }, { "name": "PPAR-alpha-regulated and starvation-induced gene protein", "type": "synonym", "evidence": [ { "id": "F1SVB2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB2/entry#names_and_taxonomy" } ] }, { "name": "all-trans-retinol 13,14-reductase", "type": "synonym", "evidence": [ { "id": "XP_003124992", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124992" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SVB2", "url": "https://www.uniprot.org/uniprotkb/F1SVB2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RETSAT", "url": "https://www.uniprot.org/uniprotkb/F1SVB2", "locus": { "chromosome": "3", "start_pos": 59416685, "end_pos": 59399688, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008237", "url": "https://www.ensembl.org/id/ENSSSCG00000008237" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008237", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008237", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519138", "url": "https://www.ncbi.nlm.nih.gov/gene/100519138", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052206", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052206", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519138", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519138", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AFMFADW", "url": "https://omabrowser.org/oma/group/AFMFADW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SVB2", "url": "https://www.orthodb.org/?gene=F1SVB2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46091", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46091", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46091:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46091:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13450", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13450", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003124992", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124992", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19193", "url": "https://www.rhea-db.org/rhea/19193", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SVB2", "url": "https://www.uniprot.org/uniprotkb/F1SVB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SVB2-1", "url": "https://www.uniprot.org/uniprotkb/F1SVB2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWLSLLLLAALLLAVLGQVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSVNRVPEKLDVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGGCCHTFGKDGLEFDTGIHYIGRMEEGSFGRFILDQITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLKEKFPQEEAAIDKYIKLVKMVSSRASHAILLKILPLPLAQFLSKYGLLTRFSPFLRASTQSLAKVLQQLPASPELRAVLSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAFHTIPVIQRAGGAVLTRAPVQSILLDSAGKACGVAVKNGQELVNIFCPVVISDAGLFNTYEHLLPEKARSLPGVQRQLGAVRPGLSIFSVFICLRGTKKDLGLWSTNYYVYFDTDMDKAMEHYLSLPRDKAAAHMPLLFIASPSSKDPTWEDRFPDRSTLIVLVPTSYEWFEEWRDEPKGKRSSDYETLKSSFVEASLSVVLKLFPQLEGKVDSVTGGSPLTTQFYLAAPRGACYGADHDLSRLHPHVMASMRAQSPIPNLYLTGQDIFTCGLMGALQGALLCSGAILKRNLYSDLWKLGSKIQAQKNKKKN", "length": 611, "header": "tr|F1SVB2-1|F1SVB2_PIG Isoform 1 of All-trans-retinol 13,14-reductase OS=Sus scrofa OX=9823 GN=RETSAT PE=1 SV=1 CANONICAL=F1SVB2-1" }, "isoforms": [ { "isoform_ac": "F1SVB2-1", "url": "https://www.uniprot.org/uniprotkb/F1SVB2/entry#F1SVB2-1", "sequence": { "sequence": "MWLSLLLLAALLLAVLGQVYKWLFAGSSPNPFSEDVKRPPAPLVTDKEARKKVLKQVFSVNRVPEKLDVVVIGSGFGGLAAAAILAKAGKRVLVLEQHTKAGGCCHTFGKDGLEFDTGIHYIGRMEEGSFGRFILDQITEGQLDWATLSSPFDIMVLDGPNGRKEFPMYTGKKAYVQGLKEKFPQEEAAIDKYIKLVKMVSSRASHAILLKILPLPLAQFLSKYGLLTRFSPFLRASTQSLAKVLQQLPASPELRAVLSYIFPTYGVTPSHSTFAMHALLVDHYLKGAFYPKGGTSEIAFHTIPVIQRAGGAVLTRAPVQSILLDSAGKACGVAVKNGQELVNIFCPVVISDAGLFNTYEHLLPEKARSLPGVQRQLGAVRPGLSIFSVFICLRGTKKDLGLWSTNYYVYFDTDMDKAMEHYLSLPRDKAAAHMPLLFIASPSSKDPTWEDRFPDRSTLIVLVPTSYEWFEEWRDEPKGKRSSDYETLKSSFVEASLSVVLKLFPQLEGKVDSVTGGSPLTTQFYLAAPRGACYGADHDLSRLHPHVMASMRAQSPIPNLYLTGQDIFTCGLMGALQGALLCSGAILKRNLYSDLWKLGSKIQAQKNKKKN", "length": 611, "header": "tr|F1SVB2-1|F1SVB2_PIG Isoform 1 of All-trans-retinol 13,14-reductase OS=Sus scrofa OX=9823 GN=RETSAT PE=1 SV=1 CANONICAL=F1SVB2-1" }, "locus": { "chromosome": "3", "start_pos": 59414950, "end_pos": 59401370, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009020.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009020.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008794.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008794.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 268, "start_aa": "Thr", "end_pos": 268, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr268", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SVB2", "url": "https://www.uniprot.org/uniprotkb/F1SVB2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519138", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519138", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BDK9-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "RETSAT", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWVSLLLLAALLLVVLGKVYKGLFSGSSPNPFLEDVQRPPAPLVTDKEARKKVLKQAFSVSRVPKKLDVVVIGSGFGGLAAAAILAKTGKRVLVLEQHTKAGGCCHTFGKNGLEFDTGIHYIGRMQEGSFDRFILDQITEGQLDWAALSSPFDIMVLEGPDGRKEFPMYTGMKAYIQGLKDKFPQEEAAIDKYMKLVKVVSRGGIYAVLLKILPLPVAQLLTKYGLLTYFSPFLRASTQSLAEVLQQLPASPELQAVLSYIFPTYGVTPSHTTFSMHALLVDYFLGGAFYPRGGSSEIAFHTIPVIQRAGGAVLTRAPVHSILLDSAGKACGVTVKKGEDLVNIYCPIVISDAGLFNTYEHLLPEQARCLPGVKRQLGMVRPGLSMFCVFICLRGTKEDLGLPTTNYYIYFDKDMDRAMEHYVSLPGDKAAAHMPLLFISFSSAKDPTWEDRYPDRSTAIILVPTSYEWFKEWRDEPQGKRSSAYENLKSSFVEAAVSVFLKQFPHLEGKVDSVTGGSPLSIQFYLAAPQGACYGADHDLGRLHPGAMASIRAQSPIPNLYLTGQDVLTCGLTGALQGALLCSSAILKRNLYLDLWKLGSRIQARKKKN", "length": 609 }, "evidence": [ { "id": "F1SVB2", "url": "https://omabrowser.org/oma/group/F1SVB2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5BLE8-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "retsat", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MWFAVVAIFLALVAFLYRYVVGSGPNPFAIDTREPLKPMVFDRKLKNKVLKQGFLASRVPEDLDAVVVGSGIGGLAIAVLLAKVGKKVLVLEQHDRAGGCCHTFKEQGFEFDVGIHYIGELSNHKPLRCIIDQMTNGQLQWDPLENPFDNVVIGPPENRRIYQIYSGRKRYMDELKKCFPGEEKAIDEYVRLCKEVGQGVWVMVLLKFLPTPIANFLVRTGLANRLTSFSRYASRSLTDVVNELTQNKDLRAVLSYIFGTYGKIPKEASFSMHSLIVNHYMNGAWYPKGGATEIAYHMIPIIEKAGGAVLVRAPVNRILLNDAKEAIGVSVLKGQEEVHVRAPIVISDAGIFNTYEYLLPKDVQTMPAIQKQLSMLQHGDSGLSIFIGLDGTKEELGLKADNYFIYPENNIDELLEDYRSGNREESAKKNPLIFVASPSAKDSTWPERTPGKSTLTVVSFANYEWFEEWKDDKVKNRSTDYKQLKELFINYILEAVTEIYPKIKDRIEYVDAGTPITNQHYIAAPRGEIYGADHGIPRFSAELNATIRAQTPIKNLYLTGQDLMLCGFAGALTGALTCGSVILNRNLHLEAFSLAKRVQNGNNKKKT", "length": 607 }, "evidence": [ { "id": "F1SVB2", "url": "https://omabrowser.org/oma/group/F1SVB2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q64FW2-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "Retsat", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWITALLLAVLLLVILHRVYVGLYAASSPNPFAEDVKRPPEPLVTDKEARKKVLKQAFSVSRVPEKLDAVVIGSGIGGLASAAVLAKAGKRVLVLEQHTKAGGCCHTFGENGLEFDTGIHYIGRMREGNIGRFILDQITEGQLDWAPMASPFDLMILEGPNGRKEFPMYSGRKEYIQGLKKKFPKEEAVIDKYMELVKVVARGVSHAVLLKFLPLPLTQLLSKFGLLTRFSPFCRASTQSLAEVLQQLGASRELQAVLSYIFPTYGVTPSHTAFSLHALLVDHYIQGAYYPRGGSSEIAFHTIPLIQRAGGAVLTRATVQSVLLDSAGRACGVSVKKGQELVNIYCPVVISNAGMFNTYQHLLPETVRHLPDVKKQLAMVRPGLSMLSIFICLKGTKEDLKLQSTNYYVYFDTDMDKAMERYVSMPKEKAPEHIPLLFIAFPSSKDPTWEERFPDRSTMTALVPMAFEWFEEWQEEPKGKRGVDYETLKNAFVEASMSVIMKLFPQLEGKVESVTGGSPLTNQYYLAAPRGATYGADHDLARLHPHAMASIRAQTPIPNLYLTGQDIFTCGLMGALQGALLCSSAILKRNLYSDLQALGSKVKAQKKKM", "length": 609 }, "evidence": [ { "id": "F1SVB2", "url": "https://omabrowser.org/oma/group/F1SVB2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VHE9-1", "protein_name": "All-trans-retinol 13,14-reductase", "gene_name": "Retsat", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWITALLLVVLLLVVVHRVYVGLFTGSSPNPFAEDVKRPPEPLVTDKEARKKVLKQAFSVSRVPEKLDAVVIGSGIGGLASAAVLAKAGKRVLVLEQHTKAGGCCHTFGENGLEFDTGIHYIGRMREGNIGRFILDQITEGQLDWAPMASPFDLMILEGPNGRKEFPMYSGRKEYIQGLKEKFPKEEAVIDKYMELVKVVAHGVSHAILLKFLPLPLTQLLNKFGLLTRFSPFCRASTQSLAEVLKQLGASPELQAVLSYILPTYGVTPSHTTFSLHALLVDHYIQGAYYPRRGSSEIAFHTIPLIQRAGGAVLTRATVQSVLLDSAGRACGVSVKKGQELVNIYCPVVISNAGMFNTYQHLLPESVRYLPDVKKQLTMVKPGLSMLSIFICLKGTKEELKLQSTNYYVYFDTDMDKAMECYVSMPKEKAPEHIPLLFIPFPSSKDPTWEDRFPDRSTMTVLVPTAFEWFEEWQEEPKGKRGVDYETLKNTFREASMSVIMKLFPQLEGKVESVTGGSPLTNQYYLAAHRGATYGADHDLARLHPHAMASLRAQTPIPNLYLTGQDIFTCGLMGALQGALLCSSAILKRNLYSDLQALGSKVRAQKKKK", "length": 609 }, "evidence": [ { "id": "F1SVB2", "url": "https://omabrowser.org/oma/group/F1SVB2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "F1SVB2", "url": "https://www.uniprot.org/uniprotkb/F1SVB2" } ], "pmid": "" }, { "name": "nuclear outer membrane", "id": "GO:0005640", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005640", "evidence": [ { "database": "UniProtKB", "id": "F1SVB2", "url": "https://www.uniprot.org/uniprotkb/F1SVB2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "retinol metabolic process", "id": "GO:0042572", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042572", "evidence": [ { "database": "UniProtKB", "id": "F1SVB2", "url": "https://www.uniprot.org/uniprotkb/F1SVB2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "all-trans-retinol 13,14-reductase activity", "id": "GO:0051786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051786", "evidence": [ { "database": "UniProtKB", "id": "F1SVB2", "url": "https://www.uniprot.org/uniprotkb/F1SVB2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19193", "name": "", "equation": "all-trans-13,14-dihydroretinol + A = all-trans-retinol + AH2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "19193", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/19193" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 268 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SVB7-1", "uniprot_ac": "F1SVB7", "uniprot_id": "F1SVB7_PIG", "mass": { "chemical_mass": 20814.0, "monoisotopic_mass": 20814.0 }, "refseq": {}, "gene_names": [ { "name": "RNF181", "type": "recommended", "evidence": [ { "id": "F1SVB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB7" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase RNF181", "type": "recommended", "evidence": [ { "id": "F1SVB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB7/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "F1SVB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB7/entry#names_and_taxonomy" } ] }, { "name": "RING finger protein 181", "type": "synonym", "evidence": [ { "id": "F1SVB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Catalyzes monoubiquitination of 26S proteasome subunit PSMC2/RPT1.", "evidence": [ { "database": "UniProtKB", "id": "F1SVB7", "url": "https://www.uniprot.org/uniprotkb/F1SVB7#function" }, { "database": "UniProtKB", "id": "ARBA00045940", "url": "https://www.uniprot.org/uniprotkb/ARBA00045940#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SVB7", "url": "https://www.uniprot.org/uniprotkb/F1SVB7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF181", "url": "https://www.uniprot.org/uniprotkb/F1SVB7", "locus": { "chromosome": "3", "start_pos": 59171082, "end_pos": 59174229, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008232", "url": "https://www.ensembl.org/id/ENSSSCG00000008232" } ] } } ], "crossref": [ { "id": "F1SVB7", "url": "https://alphafold.ebi.ac.uk/entry/F1SVB7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000008232", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008232", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16669", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16669", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR15710", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15710", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15710:SF160", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15710:SF160", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8866654", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SVB7", "url": "https://www.uniprot.org/uniprotkb/F1SVB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SVB7-1", "url": "https://www.uniprot.org/uniprotkb/F1SVB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRAVSDSPAAMASYFDEHDCEPLDPEPDARTNMLLELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSGCILPWLSKTNSCPLCRHELPTDDDTYEEHRRDKARKQQQKHRLENLMEPCTHEAAGAEHWSSTTSSACASNH", "length": 183, "header": "tr|F1SVB7-1|F1SVB7_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF181 OS=Sus scrofa OX=9823 GN=RNF181 PE=1 SV=3 CANONICAL=F1SVB7-1" }, "isoforms": [ { "isoform_ac": "F1SVB7-1", "url": "https://www.uniprot.org/uniprotkb/F1SVB7/entry#F1SVB7-1", "sequence": { "sequence": "MRAVSDSPAAMASYFDEHDCEPLDPEPDARTNMLLELARSLFNRMDFEDLGLVVDWDHHLPPPAAKTVVENLPRTVIRGSQAELKCPVCLLEFEEEETAIEMPCHHLFHSGCILPWLSKTNSCPLCRHELPTDDDTYEEHRRDKARKQQQKHRLENLMEPCTHEAAGAEHWSSTTSSACASNH", "length": 183, "header": "tr|F1SVB7-1|F1SVB7_PIG Isoform 1 of E3 ubiquitin-protein ligase RNF181 OS=Sus scrofa OX=9823 GN=RNF181 PE=1 SV=3 CANONICAL=F1SVB7-1" }, "locus": { "chromosome": "3", "start_pos": 59174221, "end_pos": 59172412, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009015.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009015.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008789.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008789.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SVB7", "url": "https://www.uniprot.org/uniprotkb/F1SVB7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8866654", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "resource": "Reactome", "description": "E3 ubiquitin ligases ubiquitinate target proteins" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F1SVB7", "url": "https://www.uniprot.org/uniprotkb/F1SVB7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SVB7", "url": "https://www.uniprot.org/uniprotkb/F1SVB7" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "F1SVB7", "url": "https://www.uniprot.org/uniprotkb/F1SVB7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SVB7", "url": "https://www.uniprot.org/uniprotkb/F1SVB7" } ], "pmid": "" }, { "name": "protein autoubiquitination", "id": "GO:0051865", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051865", "evidence": [ { "database": "UniProtKB", "id": "F1SVB7", "url": "https://www.uniprot.org/uniprotkb/F1SVB7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-8939323", "name": "RNF181 binds BCL10 and Ubiquitin:E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8939323", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939323" } ] }, { "id": "R-SSC-8939335", "name": "RNF181 polyubiquinates BCL10", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-8939335", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939335" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F1SVB7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 183, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F1SVB7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F1SVB7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SVB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVB7" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 127, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SVC3-1", "uniprot_ac": "F1SVC3", "uniprot_id": "F1SVC3_PIG", "mass": { "chemical_mass": 194529.0, "monoisotopic_mass": 194529.0 }, "refseq": { "ac": "XP_005662463", "name": "DNA-directed RNA polymerase I subunit RPA1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662463" }, "gene_names": [ { "name": "POLR1A", "type": "recommended", "evidence": [ { "id": "F1SVC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ] }, { "name": "POLR1A", "type": "synonym", "evidence": [ { "id": "XP_005662463", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662463" } ] } ], "protein_names": [ { "name": "DNA-directed RNA polymerase subunit", "type": "recommended", "evidence": [ { "id": "F1SVC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVC3/entry#names_and_taxonomy" } ] }, { "name": "2.7.7.6", "type": "synonym", "evidence": [ { "id": "F1SVC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVC3/entry#names_and_taxonomy" } ] }, { "name": "DNA-directed RNA polymerase I subunit RPA1", "type": "synonym", "evidence": [ { "id": "XP_005662463", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662463" } ] } ], "function": [ { "annotation": "DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3#function" }, { "database": "UniProtKB", "id": "RU004279", "url": "https://www.uniprot.org/uniprotkb/RU004279#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLR1A", "url": "https://www.uniprot.org/uniprotkb/F1SVC3", "locus": { "chromosome": "3", "start_pos": 58750421, "end_pos": 58667971, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008226", "url": "https://www.ensembl.org/id/ENSSSCG00000008226" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008226", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008226", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01435", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01435", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd02735", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02735", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100518066", "url": "https://www.ncbi.nlm.nih.gov/gene/100518066", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006592", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006592", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007080", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007080", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007081", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007081", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038120", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038120", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047107", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047107", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100518066", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518066", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SVC3", "url": "https://www.orthodb.org/?gene=F1SVC3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19376", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19376", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19376:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19376:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00623", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00623", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04983", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04983", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04997", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04997", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04998", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04998", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05000", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05000", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-5250924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73762", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73762", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73772", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73863", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73863", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005662463", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662463", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "21248", "url": "https://www.rhea-db.org/rhea/21248", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SVC3-1", "url": "https://www.uniprot.org/uniprotkb/F1SVC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDSKEVCSTCVQDFNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILYRFLEENPDPTASEIQEELEQYTATIVQNNLLGSHGSHVKNVCESRSKLIASFWKAHMTAKRCPHCRTGRSVVRKEHNSKLTITYPAMVHRKADQKDAEPQAPGIEEAQMGKRGYLTPLSAQDHLIALWKNEGFFLNYLFLGLEDVGLESRFNPSMFFLDFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPCEVAAPAPDEEKDSSTAMDRSFLSLLPGQSLTDRLYNIWIRLQSHVNIVFDSEMDKLTMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPTVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDQIPLNLLGKAKIGGKAWVKEAPRPVPGFNPNLMCESQVVIRDGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPRADVRRHRIIEESTRCGPRAVRAALNLPEAASCDEVRGKWQDAHLSKDQRDFNMIDLKFKEEVNHHSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLREVLSKAEPKKALRHFRAIKKWQSRHSNSLLREGAFLNYSQKIQAAVKALNLEGANQNGRSPETHQVLRMWSELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSLEWAAQAEKSHEKSELSLERLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFNTRRALKKVKSLKKQLTRVCLGEVLEKIDVQESFSMGEKQAKFRVYQLRFQFLPYACYQQEKCLRPEDILHFMETRFFKILMESIKKKNNKASTFRNVNTRRATQRDLDDSGESERTRGDREGDDEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEDEEKEEDEKEDEDIQEEGSIRGEGFHQEQEEEEGLGPEEDSLPAAPLTQPRKPTRSREPQGAEAVERRVRAVRECHPLIEDYQYDTEASLWCQVTVKLPLMKVNFDMSSLVVSLAQGTVVYATKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELKQPLR", "length": 1720, "header": "tr|F1SVC3-1|F1SVC3_PIG Isoform 1 of DNA-directed RNA polymerase subunit OS=Sus scrofa OX=9823 GN=POLR1A PE=3 SV=4 CANONICAL=F1SVC3-1" }, "isoforms": [ { "isoform_ac": "F1SVC3-1", "url": "https://www.uniprot.org/uniprotkb/F1SVC3/entry#F1SVC3-1", "sequence": { "sequence": "MLGSKNMPWRRLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDSKEVCSTCVQDFNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLLLCQLRVLEVGALQAVYELERILYRFLEENPDPTASEIQEELEQYTATIVQNNLLGSHGSHVKNVCESRSKLIASFWKAHMTAKRCPHCRTGRSVVRKEHNSKLTITYPAMVHRKADQKDAEPQAPGIEEAQMGKRGYLTPLSAQDHLIALWKNEGFFLNYLFLGLEDVGLESRFNPSMFFLDFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVVLIRKLLALMAQEQELPCEVAAPAPDEEKDSSTAMDRSFLSLLPGQSLTDRLYNIWIRLQSHVNIVFDSEMDKLTMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPTVHPGASMVINEDGSRTALSASDLTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDQIPLNLLGKAKIGGKAWVKEAPRPVPGFNPNLMCESQVVIRDGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILVKPRADVRRHRIIEESTRCGPRAVRAALNLPEAASCDEVRGKWQDAHLSKDQRDFNMIDLKFKEEVNHHSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLREVLSKAEPKKALRHFRAIKKWQSRHSNSLLREGAFLNYSQKIQAAVKALNLEGANQNGRSPETHQVLRMWSELDEQSRRKYQKKAAPCPDPSLSVWRPDIYFASVSETFEKKMDDYSLEWAAQAEKSHEKSELSLERLRTLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKTPMMSVPVFNTRRALKKVKSLKKQLTRVCLGEVLEKIDVQESFSMGEKQAKFRVYQLRFQFLPYACYQQEKCLRPEDILHFMETRFFKILMESIKKKNNKASTFRNVNTRRATQRDLDDSGESERTRGDREGDDEEEGHIVDAEAEEGDADASDAKRKEKQEEEVDYESEEDEEKEEDEKEDEDIQEEGSIRGEGFHQEQEEEEGLGPEEDSLPAAPLTQPRKPTRSREPQGAEAVERRVRAVRECHPLIEDYQYDTEASLWCQVTVKLPLMKVNFDMSSLVVSLAQGTVVYATKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELKQPLR", "length": 1720, "header": "tr|F1SVC3-1|F1SVC3_PIG Isoform 1 of DNA-directed RNA polymerase subunit OS=Sus scrofa OX=9823 GN=POLR1A PE=3 SV=4 CANONICAL=F1SVC3-1" }, "locus": { "chromosome": "3", "start_pos": 58749551, "end_pos": 58670649, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009008.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009008.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008782.4", "url": "https://www.ensembl.org/id/ENSSSCP00000008782.4" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 153, "start_aa": "Thr", "end_pos": 153, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr153", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 475, "start_aa": "Thr", "end_pos": 475, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr475", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100518066", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100518066", "resource": "KEGG Pathway" }, { "id": "R-SSC-5250924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "resource": "Reactome", "description": "B-WICH complex positively regulates rRNA expression" }, { "id": "R-SSC-73762", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73762", "resource": "Reactome", "description": "RNA Polymerase I Transcription Initiation" }, { "id": "R-SSC-73772", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "resource": "Reactome", "description": "RNA Polymerase I Promoter Escape" }, { "id": "R-SSC-73863", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73863", "resource": "Reactome", "description": "RNA Polymerase I Transcription Termination" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of protein localization to nucleolus", "id": "GO:1904750", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904750", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" }, { "name": "transcription elongation by RNA polymerase I", "id": "GO:0006362", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006362", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" }, { "name": "nucleolar large rRNA transcription by RNA polymerase I", "id": "GO:0042790", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042790", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "magnesium ion binding", "id": "GO:0000287", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000287", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" }, { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" }, { "name": "DNA-directed RNA polymerase activity", "id": "GO:0003899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003899", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" }, { "name": "DNA/RNA hybrid binding", "id": "GO:0071667", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071667", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "fibrillar center", "id": "GO:0001650", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001650", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" }, { "name": "RNA polymerase I complex", "id": "GO:0005736", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005736", "evidence": [ { "database": "UniProtKB", "id": "F1SVC3", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1093, "end_pos": 1095, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1242, "end_pos": 1244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1565, "end_pos": 1567, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1665, "end_pos": 1667, "annotation": "n_glycosylation_sequon" }, { "start_pos": 642, "end_pos": 644, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "21248", "name": "", "equation": "RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "21248", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/21248" } ] }, { "id": "R-SSC-5250930", "name": "B-WICH recruits histone acetyltransferases", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5250930", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250930" } ] }, { "id": "R-SSC-5250938", "name": "B-WICH:histone acetyltransferase acetylates histone H3 at lysine-9", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-5250938", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250938" } ] }, { "id": "R-SSC-73757", "name": "Binding of RRN3 to RNA Polymerase I", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-73757", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73757" } ] }, { "id": "R-SSC-73758", "name": "Recruitment of Active RNA Polymerase I to SL1:phos.UBF-1:rDNA Promoter", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-73758", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73758" } ] }, { "id": "R-SSC-73769", "name": "Loss of Rrn3 from RNA Polymerase I promoter escape complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-73769", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73769" } ] }, { "id": "R-SSC-74986", "name": "Elongation of pre-rRNA transcript", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleolus", "input_participant_list": [], "output_participant_list": [ "R-ALL-74985" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-74986", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-74986" } ] }, { "id": "R-SSC-74993", "name": "PTRF Binds the Polymerase I Transcription Complex/Nascent Pre rRNA Complex paused at the TTF-I:Sal Box", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-74993", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-74993" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-74985", "participant_name": "elongating pre-rRNA transcript [nucleoplasm]", "crossref": [ { "id": "33697", "database": "ChEBI", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SVC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVC3" }, { "id": "SM00663", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00663" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNA polymerase N-terminal", "eco_id": "ECO_0000259", "start_pos": 297, "end_pos": 644, "start_aa": "Ser", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 153, 475 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1093, "end_pos": 1095 }, { "start_pos": 1242, "end_pos": 1244 }, { "start_pos": 1565, "end_pos": 1567 }, { "start_pos": 1665, "end_pos": 1667 }, { "start_pos": 642, "end_pos": 644 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SVD1-1", "uniprot_ac": "F1SVD1", "uniprot_id": "F1SVD1_PIG", "mass": { "chemical_mass": 79375.0, "monoisotopic_mass": 79375.0 }, "refseq": { "ac": "XP_005662456", "name": "E3 ubiquitin-protein ligase RNF103", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662456" }, "gene_names": [ { "name": "RNF103", "type": "recommended", "evidence": [ { "id": "F1SVD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVD1" } ] }, { "name": "RNF103", "type": "synonym", "evidence": [ { "id": "XP_005662456", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662456" } ] } ], "protein_names": [ { "name": "E3 ubiquitin-protein ligase RNF103", "type": "synonym", "evidence": [ { "id": "XP_005662456", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662456" } ] }, { "name": "Ring finger protein 103", "type": "synonym", "evidence": [ { "id": "F1SVD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVD1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SVD1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RNF103", "url": "https://www.uniprot.org/uniprotkb/F1SVD1", "locus": { "chromosome": "3", "start_pos": 58186858, "end_pos": 58161261, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008218", "url": "https://www.ensembl.org/id/ENSSSCG00000008218" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008218", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008218", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16473", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16473", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100515888", "url": "https://www.ncbi.nlm.nih.gov/gene/100515888", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100515888", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515888", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PDWLAWP", "url": "https://omabrowser.org/oma/group/PDWLAWP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F1SVD1", "url": "https://www.orthodb.org/?gene=F1SVD1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15302", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15302", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15302:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15302:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005662456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662456", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F1SVD1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SVD1-1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWLKLFFLLLYFLVLFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYDAEHLKEEWNKSDQYWVKIYLFANLDQPPAFFSALSIKFTGRVEFIFVNVENWDNKSYMTDIGIYSMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSVQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYEYSLKLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRNNNNDEVNANNLEWLSSLWDWYTSYLFHPITSFQNFPVESDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPMWRFKCLGVQSEEEMSEGSQDTEHESDSESTDTLSSEKEVFEEKQSIVHSSPGQTSHSDAEACSCASKYCQTTAYERKGRSYGSYSSNEDMEPDWLTWPADMLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQHQSLSNDVPS", "length": 685, "header": "tr|F1SVD1-1|F1SVD1_PIG Isoform 1 of Ring finger protein 103 OS=Sus scrofa OX=9823 GN=RNF103 PE=4 SV=2 CANONICAL=F1SVD1-1" }, "isoforms": [ { "isoform_ac": "F1SVD1-1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1/entry#F1SVD1-1", "sequence": { "sequence": "MWLKLFFLLLYFLVLFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYDAEHLKEEWNKSDQYWVKIYLFANLDQPPAFFSALSIKFTGRVEFIFVNVENWDNKSYMTDIGIYSMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSVQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYEYSLKLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRNNNNDEVNANNLEWLSSLWDWYTSYLFHPITSFQNFPVESDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPMWRFKCLGVQSEEEMSEGSQDTEHESDSESTDTLSSEKEVFEEKQSIVHSSPGQTSHSDAEACSCASKYCQTTAYERKGRSYGSYSSNEDMEPDWLTWPADMLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQHQSLSNDVPS", "length": 685, "header": "tr|F1SVD1-1|F1SVD1_PIG Isoform 1 of Ring finger protein 103 OS=Sus scrofa OX=9823 GN=RNF103 PE=4 SV=2 CANONICAL=F1SVD1-1" }, "locus": { "chromosome": "3", "start_pos": 58183304, "end_pos": 58161548, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009000.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009000.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008774.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008774.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SVD1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100515888", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100515888", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2N206-1", "protein_name": "E3 ubiquitin-protein ligase RNF103 isoform X1", "gene_name": "Rnf103", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MWLKLFFLLLYFLVLFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYNVEHLKEEWNKSDQYWVKIYLFAKLDQPPAFFSALSIKFTGRVEFIFVNVENWDNKSYMTDIGVYNMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYEYSLRLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRSNNDEVNANNLEWLSSLWDWYTSYLFHPIASLQNFPVESDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPMWRFKCLGVQSEEEMSESSQDTENDSDSDNMDTFSSKDVFEDKQSIVHSSLGRTSHCDAGACSCANKYCQTSPRERKGRSYGSHNTNEDMEPDWLTWPAGTLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPFAQQQLLSNDVPS", "length": 683 }, "evidence": [ { "id": "F1SVD1", "url": "https://omabrowser.org/oma/group/F1SVD1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0YSH5-1", "protein_name": "Ring finger protein 103", "gene_name": "RNF103", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MWLKLCFLLLYFLVLFVLARVFEAVVWYETGFFATQLVDPVALSFRKLRTILECRGLGHSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKVHWEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWLKSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYNSEHLREEWNRSDQYRVKIYLFASLDQPPAFFSALSVKFTGRVEFIFVNVENWDNKSYMAEIGVYKTPSYILRTPEGIYRYGSNAGEFISLRAMDSFLRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYEYSLKLFRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRNNNNDEVNANNLEWLSSLWDWYTSYLFHPIASFQHFPFDSDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPVWRFKCLGVHSDEEMLETLQDGESDSDTENREVFSSEKDISEDDEPSTFHRPRAGEPRSRAGSCSCASTCCHKEPCERKARSYGSYSTADEPDWSAWPPEMLHCTECVVCLENFERGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWASYKKKQPYTHPQPLSSDSPS", "length": 684 }, "evidence": [ { "id": "F1SVD1", "url": "https://omabrowser.org/oma/group/F1SVD1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BEJ4-1", "protein_name": "Ring finger protein 103", "gene_name": "RNF103", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MWLKLFFLLLYFLVLFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYNAERLKEEWNKSDQYWVKIYLFANLDQPPAFFSALSIKFTGRVEFIFVNVEKWDNKSYMTDIGVYNMPSYILRTPEGIYRYGNHTGEYISLQAMDSFLRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYEYSLKLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRNINNDEVNANNLEWLSSLWDWYTSYLFHPIASFQNFPVESDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPMWRFKCLGVQSEEEMSEGSQDIENDSDSESTDTLSSEKEVFEDKLSIIHSSPGRASHCDAEACSCANKYCQTSPYERKGRSYGSYSANEDMEPDWLTWPADMLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQHQPLSNDFPS", "length": 685 }, "evidence": [ { "id": "F1SVD1", "url": "https://omabrowser.org/oma/group/F1SVD1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O00237-1", "protein_name": "E3 ubiquitin-protein ligase RNF103", "gene_name": "RNF103", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MWLKLFFLLLYFLVLFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYNAEHLKEEWNKSDQYWLKIYLFANLDQPPAFFSALSIKFTGRVEFIFVNVENWDNKSYMTDIGIYNMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYEYSLKLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRNNNNDEVNANNLEWLSSLWDWYTSYLFHPIASFQNFPVESDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPMWRFKCLGVQSEEEMSEGSQDTENDSESENTDTLSSEKEVFEDKQSVLHNSPGTASHCDAEACSCANKYCQTSPCERKGRSYGSYNTNEDMEPDWLTWPADMLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQHQPLSNDVPS", "length": 685 }, "evidence": [ { "id": "F1SVD1", "url": "https://omabrowser.org/oma/group/F1SVD1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9EPZ8-1", "protein_name": "E3 ubiquitin-protein ligase RNF103", "gene_name": "Rnf103", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWLKLFFLLLYFLVLFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYNVEHLKEEWNKSDQYWVKIYLFANLDQPPAFFSALSIKFTGRVEFIFVNVENWNNKSYMTDIGIYNMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYEYSLRLLRYSNTTTLASWVRADWMFYSSHPALFLSTYLGHGLLIDYFEKKRRRSNNDEVNANNLEWLSSLWDWYTSYLFHPIASFQNFPVDSDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPMWRFKCLGAQSEEEMSESSQDTENDSDSDNTDTFSSSKDVFEDKQNVHSSPGRTSRCDTEACSCANKCVSSPCERKRRSYGSHNTKEDMEPDWLTWPAGTLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQQQPLSNDAPS", "length": 682 }, "evidence": [ { "id": "F1SVD1", "url": "https://omabrowser.org/oma/group/F1SVD1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9R1W3-1", "protein_name": "E3 ubiquitin-protein ligase RNF103", "gene_name": "Rnf103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWLKLFFLLLYFLVLFVLARFFEAIVWYETGIFATQLVDPVALSFKKLKTILECRGLGYSGLPEKKDVRELVEKSGDLMEGELYSALKEEEASESVSSTNFSGEMHFYELVEDTKDGIWLVQVIANDRSPLVGKIHWEKMVKKVSRFGIRTGTFNCSSDPRYCRRRGWVRSTLIMSVPQTSTSKGKVMLKEYSGRKIEVEHIFKWITAHAASRIKTIYNVEHLKEEWNKSDQYWVKIYLFANLDQPPAFFSALSIKFTGRVEFIFVNVENWNNKSYMTDIGIYNMPSYILRTPEGIYRYGNHTGEFISLQAMDSFLRSLQPEVNDLFVLSLVLVNLMAWMDLFITQGATIKRFVVLISTLGTYNSLLIISWLPVLGFLQLPYLDSFYDYSLRLLRYSNTTTLASWVRADWMFYTSHPALFLSTYLGHGLLIDYFEKKRRRSNNDEVNANNLEWLSSLWDWYTSYLFHPIASFQNFPVDSDWDEDPDLFLERLAFPDLWLHPLIPTDYIKNLPMWRFKCLGVQSEEEMSESSQDTENDSDSDNMDTFSSSKDIFEDKQSVVHSSPGRTSHCDTEACSCANKCESSPCERKRRSYGSHNTDEDMEPDWLTWPAGTLHCTECVVCLENFENGCLLMGLPCGHVFHQNCIVMWLAGGRHCCPVCRWPSYKKKQPYAQQQPLSNDVPS", "length": 683 }, "evidence": [ { "id": "F1SVD1", "url": "https://omabrowser.org/oma/group/F1SVD1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "F1SVD1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F1SVD1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1" } ], "pmid": "" }, { "name": "ubiquitin-protein transferase activity", "id": "GO:0004842", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004842", "evidence": [ { "database": "UniProtKB", "id": "F1SVD1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F1SVD1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1" } ], "pmid": "" }, { "name": "ERAD pathway", "id": "GO:0036503", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036503", "evidence": [ { "database": "UniProtKB", "id": "F1SVD1", "url": "https://www.uniprot.org/uniprotkb/F1SVD1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 100, "end_pos": 102, "annotation": "n_glycosylation_sequon" }, { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 228, "end_pos": 230, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SVD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVD1" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 621, "end_pos": 663, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 100, "end_pos": 102 }, { "start_pos": 155, "end_pos": 157 }, { "start_pos": 228, "end_pos": 230 }, { "start_pos": 273, "end_pos": 275 }, { "start_pos": 301, "end_pos": 303 }, { "start_pos": 398, "end_pos": 400 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F1SVD7-1", "uniprot_ac": "F1SVD7", "uniprot_id": "F1SVD7_PIG", "mass": { "chemical_mass": 22896.0, "monoisotopic_mass": 22896.0 }, "refseq": {}, "gene_names": [ { "name": "CD8B", "type": "recommended", "evidence": [ { "id": "F1SVD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" } ] } ], "protein_names": [ { "name": "CD8 subunit beta", "type": "synonym", "evidence": [ { "id": "F1SVD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVD7/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F1SVD7", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CD8B", "url": "https://www.uniprot.org/uniprotkb/F1SVD7", "locus": { "chromosome": "3", "start_pos": 57986441, "end_pos": 57968383, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008213", "url": "https://www.ensembl.org/id/ENSSSCG00000008213" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008213", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008213", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07700", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07700", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RLWLRIH", "url": "https://omabrowser.org/oma/group/RLWLRIH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11292", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11292", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11292:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11292:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-198933", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F1SVD7", "url": "https://www.uniprot.org/uniprotkb/F1SVD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F1SVD7-1", "url": "https://www.uniprot.org/uniprotkb/F1SVD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQTVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLALWIPNGNPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMAVGNPELTFGKGTRLSVVDVFPTTAQPTKKTRPKKKICRLPNLVPPKGPACAPLIIGLLVAGLLVLLVSLGAAVHVYCLQRRAWHRLMKQ", "length": 206, "header": "tr|F1SVD7-1|F1SVD7_PIG Isoform 1 of CD8 subunit beta OS=Sus scrofa OX=9823 GN=CD8B PE=4 SV=6 CANONICAL=F1SVD7-1" }, "isoforms": [ { "isoform_ac": "F1SVD7-1", "url": "https://www.uniprot.org/uniprotkb/F1SVD7/entry#F1SVD7-1", "sequence": { "sequence": "MQPRLWLLIAAQLSTLHGGSALLQTPSSVMAQTNQTVKLSCEARTFPTNTRIYWLRLRQAPSANSHYEFLALWIPNGNPVYGKETEKQLTVLQDSSRYLLQLRHVKPADSGNYFCMAVGNPELTFGKGTRLSVVDVFPTTAQPTKKTRPKKKICRLPNLVPPKGPACAPLIIGLLVAGLLVLLVSLGAAVHVYCLQRRAWHRLMKQ", "length": 206, "header": "tr|F1SVD7-1|F1SVD7_PIG Isoform 1 of CD8 subunit beta OS=Sus scrofa OX=9823 GN=CD8B PE=4 SV=6 CANONICAL=F1SVD7-1" }, "locus": { "chromosome": "3", "start_pos": 57983635, "end_pos": 57968399, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008994.6", "url": "https://www.ensembl.org/id/ENSSSCT00000008994.6" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008768.6", "url": "https://www.ensembl.org/id/ENSSSCP00000008768.6" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F1SVD7", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-198933", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-198933", "resource": "Reactome", "description": "Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LBU4-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MQPWLWLVFGVKLAALWSSSALLQTPRSLTVLTNQVAKVSCEAKTLPKTTLIYWLRQRRGPTKDKHFEFLASWNPSKGVATPGEGVKKESINVFSDITRYILNLTSVKLEDSGTYFCMMVGSPQLIFGSGTELSVVDALSTTAQTTKKTVIKKKQCPVPNPKAQKGLTCGLITLSLLVASLLVLLVSLGVAVHLHCLRRKARIHFMKQ", "length": 208 }, "evidence": [ { "id": "F1SVD7", "url": "https://omabrowser.org/oma/group/F1SVD7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8V0Z7T8-1", "protein_name": "CD8b molecule pseudo", "gene_name": "CD8BP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MMLDMATMARPWLWLWLCLQLPGFCTNLLSSQTPGYILTKTNNSTEIVCPMKGEHTGVYWYRWNQGRQHFEFLLFSSPLGKATYGTNISQEKFSIRGTSSYHSYRLHINRLHGSDNGTYYCCTIQSSQLILGTGTQLDVVDVLPLPSMPTLVPLTKKPMRCKPKNKAINKKGACTPMVWVPLAAGALLLLLSLIPTIRRFYRLRRRLWVRAHRRFPSNQAGMDH", "length": 224 }, "evidence": [ { "id": "F1SVD7", "url": "https://omabrowser.org/oma/group/F1SVD7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P05541-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQPWLWLVFSVKLSALWGSSALLQTPSSLLVQTNQTAKMSCEAKTFPKGTTIYWLRELQDSNKNKHFEFLASRTSTKGIKYGERVKKNMTLSFNSTLPFLKIMDVKPEDSGFYFCAMVGSPMVVFGTGTKLTVVDVLPTTAPTKKTTLKKKQCPTPHPKTQKGLTCGLITLSLLVACILVLLVSLSVAIHFHCMRRRARIHFMKQFHK", "length": 208 }, "evidence": [ { "id": "F1SVD7", "url": "https://omabrowser.org/oma/group/F1SVD7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P10300-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "Cd8b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQPWLWLVFSMKLAALWSSSALIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPEDSDFYFCATVGSPKMVFGTGTKLTVVDVLPTTAPTKKTTLKMKKKKQCPFPHPETQKGLTCSLTTLSLLVVCILLLLAFLGVAVYFYCVRRRARIHFMKQFHK", "length": 213 }, "evidence": [ { "id": "F1SVD7", "url": "https://omabrowser.org/oma/group/F1SVD7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P10966-1", "protein_name": "T-cell surface glycoprotein CD8 beta chain", "gene_name": "CD8B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRARLRFMKQFYK", "length": 210 }, "evidence": [ { "id": "F1SVD7", "url": "https://omabrowser.org/oma/group/F1SVD7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F1SVD7", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "F1SVD7", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "coreceptor activity", "id": "GO:0015026", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015026", "evidence": [ { "database": "UniProtKB", "id": "F1SVD7", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" } ], "pmid": "" }, { "name": "MHC class I protein binding", "id": "GO:0042288", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042288", "evidence": [ { "database": "UniProtKB", "id": "F1SVD7", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of immune response", "id": "GO:0050776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050776", "evidence": [ { "database": "UniProtKB", "id": "F1SVD7", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" } ], "pmid": "" }, { "name": "adaptive immune response", "id": "GO:0002250", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002250", "evidence": [ { "database": "UniProtKB", "id": "F1SVD7", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F1SVD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F1SVD7" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 3, "end_pos": 117, "start_aa": "Pro", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 34, "end_pos": 36 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z4X7-1", "uniprot_ac": "F2Z4X7", "uniprot_id": "F2Z4X7_PIG", "mass": { "chemical_mass": 18308.0, "monoisotopic_mass": 18308.0 }, "refseq": {}, "gene_names": [ { "name": "POLR3K", "type": "recommended", "evidence": [ { "id": "F2Z4X7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7" } ] } ], "protein_names": [ { "name": "DNA-directed RNA polymerase III subunit RPC10", "type": "recommended", "evidence": [ { "id": "F2Z4X7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7/entry#names_and_taxonomy" } ] }, { "name": "DNA-directed RNA polymerase III subunit K", "type": "synonym", "evidence": [ { "id": "F2Z4X7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7/entry#names_and_taxonomy" } ] }, { "name": "RNA polymerase III subunit C11", "type": "synonym", "evidence": [ { "id": "F2Z4X7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Core component of RNA polymerase III (Pol III) which synthesizes small non-coding RNAs using the four ribonucleoside triphosphates as substrates. Can mediate Pol I proofreading of the nascent RNA transcript. Anchors into the Pol III active site to constantly monitor transcription fidelity, cleaves mis-incorporated 5'-ribonucleotides and restarts the transcription process. Once Pol III reaches the poly(dT) termination signal, can induce Pol III clamp opening and transcription termination. Pol III plays an important role in sensing and limiting infection by intracellular bacteria and DNA viruses. Acts as a nuclear and cytosolic DNA sensor involved in innate immune response. Can sense non-self dsDNA that serves as template for transcription into dsRNA. The non-self RNA polymerase III transcripts, such as Epstein-Barr virus-encoded RNAs (EBERs) induce type I interferon and NF-kappa-B through the RIG-I pathway.", "evidence": [ { "database": "UniProtKB", "id": "F2Z4X7", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7#function" }, { "database": "UniProtKB", "id": "ARBA00054653", "url": "https://www.uniprot.org/uniprotkb/ARBA00054653#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z4X7", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "POLR3K", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7", "locus": { "chromosome": "3", "start_pos": 41574987, "end_pos": 41571475, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007970", "url": "https://www.ensembl.org/id/ENSSSCG00000007970" } ] } } ], "crossref": [ { "id": "F2Z4X7", "url": "https://alphafold.ebi.ac.uk/entry/F2Z4X7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007970", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007970", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10509", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10509", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001222", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001222", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001529", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001529", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019761", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019761", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034014", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11239", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11239", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11239:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11239:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02150", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02150", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F2Z4X7", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z4X7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMLWEPACRSAHWECGADVPTGGLIAERRPPGPMGSSGRPEAPGVHGQGAAGSVGWAVVMLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD", "length": 167, "header": "tr|F2Z4X7-1|F2Z4X7_PIG Isoform 1 of DNA-directed RNA polymerase III subunit RPC10 OS=Sus scrofa OX=9823 GN=POLR3K PE=3 SV=2 CANONICAL=F2Z4X7-1" }, "isoforms": [ { "isoform_ac": "F2Z4X7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7/entry#F2Z4X7-1", "sequence": { "sequence": "MMLWEPACRSAHWECGADVPTGGLIAERRPPGPMGSSGRPEAPGVHGQGAAGSVGWAVVMLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD", "length": 167, "header": "tr|F2Z4X7-1|F2Z4X7_PIG Isoform 1 of DNA-directed RNA polymerase III subunit RPC10 OS=Sus scrofa OX=9823 GN=POLR3K PE=3 SV=2 CANONICAL=F2Z4X7-1" }, "locus": { "chromosome": "3", "start_pos": 41574170, "end_pos": 41571674, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008733.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008733.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008509.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008509.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z4X7", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F2Z4X7", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "F2Z4X7", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7" } ], "pmid": "" }, { "name": "DNA-directed RNA polymerase activity", "id": "GO:0003899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003899", "evidence": [ { "database": "UniProtKB", "id": "F2Z4X7", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "termination of RNA polymerase III transcription", "id": "GO:0006386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006386", "evidence": [ { "database": "UniProtKB", "id": "F2Z4X7", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "RNA polymerase III complex", "id": "GO:0005666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005666", "evidence": [ { "database": "UniProtKB", "id": "F2Z4X7", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z4X7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 167, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z4X7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z4X7" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z4X7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4X7" }, { "id": "PS51133", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51133" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TFIIS-type", "eco_id": "ECO_0000259", "start_pos": 124, "end_pos": 166, "start_aa": "Thr", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 92, "end_pos": 94 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z4Y8-1", "uniprot_ac": "F2Z4Y8", "uniprot_id": "F2Z4Y8_PIG", "mass": { "chemical_mass": 18431.0, "monoisotopic_mass": 18431.0 }, "refseq": { "ac": "NP_001230999", "name": "small ribosomal subunit protein uS17", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230999" }, "gene_names": [ { "name": "RPS11", "type": "recommended", "evidence": [ { "id": "F2Z4Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ] }, { "name": "RPS11", "type": "synonym", "evidence": [ { "id": "NP_001230999", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230999" } ] } ], "protein_names": [ { "name": "Small ribosomal subunit protein uS17", "type": "recommended", "evidence": [ { "id": "F2Z4Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8/entry#names_and_taxonomy" } ] }, { "name": "40S ribosomal protein S11", "type": "synonym", "evidence": [ { "id": "NP_001230999", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230999" }, { "id": "F2Z4Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8/entry#names_and_taxonomy" } ] }, { "name": "small ribosomal subunit protein uS17", "type": "synonym", "evidence": [ { "id": "NP_001230999", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230999" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPS11", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8", "locus": {} } ], "crossref": [ { "id": "F2Z4Y8", "url": "https://alphafold.ebi.ac.uk/entry/F2Z4Y8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003165", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003165", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00364", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00364", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100513660", "url": "https://www.ncbi.nlm.nih.gov/gene/100513660", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "3J7P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR000266", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000266", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032440", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032440", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513660", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513660", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DYEKCPF", "url": "https://omabrowser.org/oma/group/DYEKCPF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z4Y8", "url": "https://www.orthodb.org/?gene=F2Z4Y8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10744", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10744", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10744:SF52", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10744:SF52", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00003j7p", "url": "https://www.rcsb.org/structure/pdb_00003j7p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7P", "url": "https://www.rcsb.org/structure/3J7P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF00366", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00366", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72649", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72649", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230999", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230999", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z4Y8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF", "length": 158, "header": "tr|F2Z4Y8-1|F2Z4Y8_PIG Isoform 1 of Small ribosomal subunit protein uS17 OS=Sus scrofa OX=9823 GN=RPS11 PE=1 SV=1 CANONICAL=F2Z4Y8-1" }, "isoforms": [ { "isoform_ac": "F2Z4Y8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8/entry#F2Z4Y8-1", "sequence": { "sequence": "MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF", "length": 158, "header": "tr|F2Z4Y8-1|F2Z4Y8_PIG Isoform 1 of Small ribosomal subunit protein uS17 OS=Sus scrofa OX=9823 GN=RPS11 PE=1 SV=1 CANONICAL=F2Z4Y8-1" }, "locus": { "chromosome": "6", "start_pos": 54579740, "end_pos": 54577690, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003515.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003515.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003432.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003432.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structure of the mammalian ribosome-Sec61 complex to 3.4 A resolution.", "journal": "Cell", "date": "2014", "authors": "Voorhees Rebecca M, Fern\u00e1ndez Israel S, Scheres Sjors H W, Hegde Ramanujan S", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "reference": [ { "type": "PubMed", "id": "24930395", "url": "https://glygen.org/publication/PubMed/24930395" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100513660", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513660", "resource": "KEGG Pathway" }, { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-72649", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72649", "resource": "Reactome", "description": "Translation initiation complex formation" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72695", "resource": "Reactome", "description": "Formation of the ternary complex, and subsequently, the 43S complex" }, { "id": "R-SSC-72702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72702", "resource": "Reactome", "description": "Ribosomal scanning and start codon recognition" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [ { "uniprot_canonical_ac": "G3I004-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "Rps11", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF", "length": 158 }, "evidence": [ { "id": "F2Z4Y8", "url": "https://omabrowser.org/oma/group/F2Z4Y8/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P0CX47-1", "protein_name": "Small ribosomal subunit protein uS17A", "gene_name": "RPS11A", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSTELTVQSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAGKANKQFAKF", "length": 156 }, "evidence": [ { "id": "F2Z4Y8", "url": "https://omabrowser.org/oma/group/F2Z4Y8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX48-1", "protein_name": "Small ribosomal subunit protein uS17B", "gene_name": "RPS11B", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSTELTVQSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIRGKILTGTVVSTKMHRTIVIRRAYLHYIPKYNRYEKRHKNVPVHVSPAFRVQVGDIVTVGQCRPISKTVRFNVVKVSAAAGKANKQFAKF", "length": 156 }, "evidence": [ { "id": "F2Z4Y8", "url": "https://omabrowser.org/oma/group/F2Z4Y8/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P62280-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF", "length": 158 }, "evidence": [ { "id": "F2Z4Y8", "url": "https://omabrowser.org/oma/group/F2Z4Y8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P62281-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "Rps11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF", "length": 158 }, "evidence": [ { "id": "F2Z4Y8", "url": "https://omabrowser.org/oma/group/F2Z4Y8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P62282-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "Rps11", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF", "length": 158 }, "evidence": [ { "id": "F2Z4Y8", "url": "https://omabrowser.org/oma/group/F2Z4Y8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0E9B6-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RpS11", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MADQNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVSKGQGAKKSFKKY", "length": 155 }, "evidence": [ { "id": "F2Z4Y8", "url": "https://omabrowser.org/oma/group/F2Z4Y8/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q3T0V4-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "RPS11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF", "length": 158 }, "evidence": [ { "id": "F2Z4Y8", "url": "https://omabrowser.org/oma/group/F2Z4Y8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54S90-1", "protein_name": "Small ribosomal subunit protein uS17", "gene_name": "rps11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MADIQAEKAFQKQQVSFKNRFQLKASKGKEGIRYYKNIGLGYRTPKDAIEGTYIDKKCPFTSDVSIRGAILRGTVISTKMRRTLVVRRNYLHYIKKYNRFEKRHSNIPAHVSPAFNVKEGDSVTIGQCRPLSKTVRFNVIKHDISAASKKQFKAF", "length": 155 }, "evidence": [ { "id": "F2Z4Y8", "url": "https://omabrowser.org/oma/group/F2Z4Y8/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "pmid": "" }, { "name": "small-subunit processome", "id": "GO:0032040", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032040", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "pmid": "" }, { "name": "cytosolic small ribosomal subunit", "id": "GO:0022627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022627", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "pmid": "" }, { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "pmid": "" }, { "name": "ribosomal small subunit biogenesis", "id": "GO:0042274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042274", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Y8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z4Y8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 158, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z4Y8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z4Y8" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z4Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" }, { "id": "PF16205", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16205" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Small ribosomal subunit protein uS17 N-terminal", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 73, "start_aa": "Gln", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [ { "evidence": [ { "id": "F2Z4Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8#function" }, { "id": "F2Z4Y8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Y8" }, { "id": "3J7P", "database": "PDB", "url": "https://www.rcsb.org/structure/3J7P" } ], "binding_site_uniprot": 98, "amino_acid": "Lys", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "", "uniprotkb_ligand_comment": "", "eco_id": "ECO_0007829", "start_pos": 98, "end_pos": 98, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 }, { "start_pos": 65, "end_pos": 67 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z4Z1-1", "uniprot_ac": "F2Z4Z1", "uniprot_id": "F2Z4Z1_PIG", "mass": { "chemical_mass": 28303.0, "monoisotopic_mass": 28303.0 }, "refseq": { "ac": "XP_005662019", "name": "14-3-3 protein gamma", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662019" }, "gene_names": [ { "name": "YWHAG", "type": "recommended", "evidence": [ { "id": "F2Z4Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1" } ] }, { "name": "YWHAG", "type": "synonym", "evidence": [ { "id": "XP_005662019", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662019" } ] } ], "protein_names": [ { "name": "14-3-3 protein gamma", "type": "synonym", "evidence": [ { "id": "XP_005662019", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662019" } ] }, { "name": "Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma", "type": "synonym", "evidence": [ { "id": "F2Z4Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "YWHAG", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1", "locus": { "chromosome": "3", "start_pos": 10023289, "end_pos": 9994836, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007692", "url": "https://www.ensembl.org/id/ENSSSCG00000007692" } ] } } ], "crossref": [ { "id": "F2Z4Z1", "url": "https://alphafold.ebi.ac.uk/entry/F2Z4Z1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007692", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007692", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd10024", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10024", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100523057", "url": "https://www.ncbi.nlm.nih.gov/gene/100523057", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000308", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000308", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023410", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023410", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036815", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036815", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100523057", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523057", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AYGEAHE", "url": "https://omabrowser.org/oma/group/AYGEAHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z4Z1", "url": "https://www.orthodb.org/?gene=F2Z4Z1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18860", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18860", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00244", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00244", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-111447", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111447", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2565942", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380259", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380270", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380284", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380320", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5620912", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625740", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625740", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5628897", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75035", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75035", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854518", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9614399", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9614399", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9929491", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9929491", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_005662019", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005662019", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z4Z1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z4Z1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN", "length": 247, "header": "tr|F2Z4Z1-1|F2Z4Z1_PIG Isoform 1 of Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma OS=Sus scrofa OX=9823 GN=YWHAG PE=1 SV=1 CANONICAL=F2Z4Z1-1" }, "isoforms": [ { "isoform_ac": "F2Z4Z1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1/entry#F2Z4Z1-1", "sequence": { "sequence": "MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN", "length": 247, "header": "tr|F2Z4Z1-1|F2Z4Z1_PIG Isoform 1 of Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma OS=Sus scrofa OX=9823 GN=YWHAG PE=1 SV=1 CANONICAL=F2Z4Z1-1" }, "locus": { "chromosome": "3", "start_pos": 10020552, "end_pos": 9995034, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000039594.2", "url": "https://www.ensembl.org/id/ENSSSCT00000039594.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000059047.1", "url": "https://www.ensembl.org/id/ENSSSCP00000059047.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100523057", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100523057", "resource": "KEGG Pathway" }, { "id": "R-SSC-111447", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-111447", "resource": "Reactome", "description": "Activation of BAD and translocation to mitochondria" }, { "id": "R-SSC-2565942", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2565942", "resource": "Reactome", "description": "Regulation of PLK1 Activity at G2/M Transition" }, { "id": "R-SSC-380259", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380259", "resource": "Reactome", "description": "Loss of Nlp from mitotic centrosomes" }, { "id": "R-SSC-380270", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380270", "resource": "Reactome", "description": "Recruitment of mitotic centrosome proteins and complexes" }, { "id": "R-SSC-380284", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380284", "resource": "Reactome", "description": "Loss of proteins required for interphase microtubule organization from the centrosome" }, { "id": "R-SSC-380320", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380320", "resource": "Reactome", "description": "Recruitment of NuMA to mitotic centrosomes" }, { "id": "R-SSC-5620912", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5620912", "resource": "Reactome", "description": "Anchoring of the basal body to the plasma membrane" }, { "id": "R-SSC-5625740", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625740", "resource": "Reactome", "description": "RHO GTPases activate PKNs" }, { "id": "R-SSC-5628897", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "resource": "Reactome", "description": "TP53 Regulates Metabolic Genes" }, { "id": "R-SSC-75035", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75035", "resource": "Reactome", "description": "Chk1/Chk2(Cds1) mediated inactivation of Cyclin B:Cdk1 complex" }, { "id": "R-SSC-8854518", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854518", "resource": "Reactome", "description": "AURKA Activation by TPX2" }, { "id": "R-SSC-9614399", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9614399", "resource": "Reactome", "description": "Regulation of localization of FOXO transcription factors" }, { "id": "R-SSC-9929491", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9929491", "resource": "Reactome", "description": "SPOP-mediated proteasomal degradation of PD-L1(CD274)" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AE41-1", "protein_name": "Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein gamma", "gene_name": "YWHAG", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLSGFVTWDEFLISLKLRVCLLVLGCATCHELSSEPPRHPWRRWLEPSGGGKIHGQAWVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN", "length": 276 }, "evidence": [ { "id": "F2Z4Z1", "url": "https://omabrowser.org/oma/group/F2Z4Z1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E7F354-1", "protein_name": "14-3-3 protein gamma-1", "gene_name": "ywhag2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVDREQLVQKARLAEQAERYDDMAAAMKSVTELNEALSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLNLLDNFLIKNCSETQHESKVFYLKMKGDYYRYLAEVATGEKRSTVVESSEKSYNEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDEGGEGNN", "length": 247 }, "evidence": [ { "id": "F2Z4Z1", "url": "https://omabrowser.org/oma/group/F2Z4Z1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P61981-1", "protein_name": "14-3-3 protein gamma", "gene_name": "YWHAG", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN", "length": 247 }, "evidence": [ { "id": "F2Z4Z1", "url": "https://omabrowser.org/oma/group/F2Z4Z1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P61982-1", "protein_name": "14-3-3 protein gamma", "gene_name": "Ywhag", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN", "length": 247 }, "evidence": [ { "id": "F2Z4Z1", "url": "https://omabrowser.org/oma/group/F2Z4Z1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61983-1", "protein_name": "14-3-3 protein gamma", "gene_name": "Ywhag", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN", "length": 247 }, "evidence": [ { "id": "F2Z4Z1", "url": "https://omabrowser.org/oma/group/F2Z4Z1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase C binding", "id": "GO:0005080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005080", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 111, "end_pos": 113, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 29, "end_pos": 31, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z4Z1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 247, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z4Z1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z4Z1" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z4Z1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z1" }, { "id": "SM00101", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00101" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "14-3-3", "eco_id": "ECO_0000259", "start_pos": 4, "end_pos": 247, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 111, "end_pos": 113 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 229, "end_pos": 231 }, { "start_pos": 29, "end_pos": 31 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z4Z8-1", "uniprot_ac": "F2Z4Z8", "uniprot_id": "F2Z4Z8_PIG", "mass": { "chemical_mass": 37331.0, "monoisotopic_mass": 37331.0 }, "refseq": { "ac": "XP_003481037", "name": "guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481037" }, "gene_names": [ { "name": "GNB2", "type": "recommended", "evidence": [ { "id": "F2Z4Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ] }, { "name": "GNB2", "type": "synonym", "evidence": [ { "id": "XP_003481037", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481037" } ] } ], "protein_names": [ { "name": "G protein subunit beta 2", "type": "synonym", "evidence": [ { "id": "F2Z4Z8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8/entry#names_and_taxonomy" } ] }, { "name": "guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "type": "synonym", "evidence": [ { "id": "XP_003481037", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481037" } ] } ], "function": [ { "annotation": "Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8#function" }, { "database": "UniProtKB", "id": "ARBA00002002", "url": "https://www.uniprot.org/uniprotkb/ARBA00002002#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "GNB2", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8", "locus": { "chromosome": "3", "start_pos": 8584266, "end_pos": 8579122, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000007669", "url": "https://www.ensembl.org/id/ENSSSCG00000007669" } ] } } ], "crossref": [ { "id": "F2Z4Z8", "url": "https://alphafold.ebi.ac.uk/entry/F2Z4Z8", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000007669", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000007669", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516546", "url": "https://www.ncbi.nlm.nih.gov/gene/100516546", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001632", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001632", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016346", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016346", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516546", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516546", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SCCRFLT", "url": "https://omabrowser.org/oma/group/SCCRFLT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z4Z8", "url": "https://www.orthodb.org/?gene=F2Z4Z8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19850", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19850", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1296041", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296041", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202040", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202040", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-392170", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-392170", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-392451", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-392451", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4086398", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4086398", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-416476", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418594", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-418597", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418597", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-428930", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-428930", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-456926", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-456926", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6814122", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6814122", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8964616", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964616", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-997272", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-997272", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003481037", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003481037", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z4Z8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN", "length": 340, "header": "tr|F2Z4Z8-1|F2Z4Z8_PIG Isoform 1 of G protein subunit beta 2 OS=Sus scrofa OX=9823 GN=GNB2 PE=1 SV=3 CANONICAL=F2Z4Z8-1" }, "isoforms": [ { "isoform_ac": "F2Z4Z8-1", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8/entry#F2Z4Z8-1", "sequence": { "sequence": "MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN", "length": 340, "header": "tr|F2Z4Z8-1|F2Z4Z8_PIG Isoform 1 of G protein subunit beta 2 OS=Sus scrofa OX=9823 GN=GNB2 PE=1 SV=3 CANONICAL=F2Z4Z8-1" }, "locus": { "chromosome": "3", "start_pos": 8583898, "end_pos": 8581584, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008409.5", "url": "https://www.ensembl.org/id/ENSSSCT00000008409.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008190.3", "url": "https://www.ensembl.org/id/ENSSSCP00000008190.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516546", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516546", "resource": "KEGG Pathway" }, { "id": "R-SSC-1296041", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1296041", "resource": "Reactome", "description": "Activation of G protein gated Potassium channels" }, { "id": "R-SSC-202040", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202040", "resource": "Reactome", "description": "G-protein activation" }, { "id": "R-SSC-392170", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-392170", "resource": "Reactome", "description": "ADP signalling through P2Y purinoceptor 12" }, { "id": "R-SSC-392451", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-392451", "resource": "Reactome", "description": "G beta:gamma signalling through PI3Kgamma" }, { "id": "R-SSC-4086398", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4086398", "resource": "Reactome", "description": "Ca2+ pathway" }, { "id": "R-SSC-416476", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-416476", "resource": "Reactome", "description": "G alpha (q) signalling events" }, { "id": "R-SSC-418594", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418594", "resource": "Reactome", "description": "G alpha (i) signalling events" }, { "id": "R-SSC-418597", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-418597", "resource": "Reactome", "description": "G alpha (z) signalling events" }, { "id": "R-SSC-428930", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-428930", "resource": "Reactome", "description": "Thromboxane signalling through TP receptor" }, { "id": "R-SSC-456926", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-456926", "resource": "Reactome", "description": "Thrombin signalling through proteinase activated receptors (PARs)" }, { "id": "R-SSC-6814122", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6814122", "resource": "Reactome", "description": "Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding" }, { "id": "R-SSC-8964616", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964616", "resource": "Reactome", "description": "G beta:gamma signalling through CDC42" }, { "id": "R-SSC-997272", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-997272", "resource": "Reactome", "description": "Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits" } ], "orthologs": [ { "uniprot_canonical_ac": "P11017-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN", "length": 340 }, "evidence": [ { "id": "F2Z4Z8", "url": "https://omabrowser.org/oma/group/F2Z4Z8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P54313-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "Gnb2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN", "length": 340 }, "evidence": [ { "id": "F2Z4Z8", "url": "https://omabrowser.org/oma/group/F2Z4Z8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62879-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "GNB2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN", "length": 340 }, "evidence": [ { "id": "F2Z4Z8", "url": "https://omabrowser.org/oma/group/F2Z4Z8/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P62880-1", "protein_name": "Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2", "gene_name": "Gnb2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSELEQLRQEAEQLRNQIRDARKACGDSTLTQITAGLDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGYLSCCRFLDDNQIITSSGDTTCALWDIETGQQTVGFAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVRDSMCRQTFIGHESDINAVAFFPNGYAFTTGSDDATCRLFDLRADQELLMYSHDNIICGITSVAFSRSGRLLLAGYDDFNCNIWDAMKGDRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN", "length": 340 }, "evidence": [ { "id": "F2Z4Z8", "url": "https://omabrowser.org/oma/group/F2Z4Z8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of potassium ion transmembrane transport", "id": "GO:1901379", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1901379", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "pmid": "" }, { "name": "G protein-coupled receptor signaling pathway", "id": "GO:0007186", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007186", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "pmid": "" }, { "name": "heterotrimeric G-protein complex", "id": "GO:0005834", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005834", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "pmid": "" }, { "name": "GTPase binding", "id": "GO:0051020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051020", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "pmid": "" }, { "name": "signaling receptor complex adaptor activity", "id": "GO:0030159", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030159", "evidence": [ { "database": "UniProtKB", "id": "F2Z4Z8", "url": "https://www.uniprot.org/uniprotkb/F2Z4Z8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z4Z8-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 340, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z4Z8-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z4Z8" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z505-1", "uniprot_ac": "F2Z505", "uniprot_id": "F2Z505_PIG", "mass": { "chemical_mass": 49031.0, "monoisotopic_mass": 49031.0 }, "refseq": { "ac": "XP_003124023", "name": "eukaryotic peptide chain release factor subunit 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124023" }, "gene_names": [ { "name": "ETF1", "type": "recommended", "evidence": [ { "id": "F2Z505", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ] }, { "name": "ETF1", "type": "synonym", "evidence": [ { "id": "XP_003124023", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124023" } ] } ], "protein_names": [ { "name": "Eukaryotic peptide chain release factor subunit 1", "type": "recommended", "evidence": [ { "id": "F2Z505", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z505/entry#names_and_taxonomy" } ] }, { "name": "eukaryotic peptide chain release factor subunit 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003124023", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124023" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ETF1", "url": "https://www.uniprot.org/uniprotkb/F2Z505", "locus": { "chromosome": "2", "start_pos": 140469306, "end_pos": 140504287, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014337", "url": "https://www.ensembl.org/id/ENSSSCG00000014337" } ] } } ], "crossref": [ { "id": "ENSSSCG00000014337", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014337", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100520896", "url": "https://www.ncbi.nlm.nih.gov/gene/100520896", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004403", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004403", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005140", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005140", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005141", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005141", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005142", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005142", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024049", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024049", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042226", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042226", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100520896", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520896", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RCNGSEE", "url": "https://omabrowser.org/oma/group/RCNGSEE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z505", "url": "https://www.orthodb.org/?gene=F2Z505", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03463", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03463", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03464", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03464", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72764", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72764", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9629569", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629569", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003124023", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003124023", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z505-1", "url": "https://www.uniprot.org/uniprotkb/F2Z505-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY", "length": 437, "header": "tr|F2Z505-1|F2Z505_PIG Isoform 1 of Eukaryotic peptide chain release factor subunit 1 OS=Sus scrofa OX=9823 GN=ETF1 PE=1 SV=1 CANONICAL=F2Z505-1" }, "isoforms": [ { "isoform_ac": "F2Z505-1", "url": "https://www.uniprot.org/uniprotkb/F2Z505/entry#F2Z505-1", "sequence": { "sequence": "MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY", "length": 437, "header": "tr|F2Z505-1|F2Z505_PIG Isoform 1 of Eukaryotic peptide chain release factor subunit 1 OS=Sus scrofa OX=9823 GN=ETF1 PE=1 SV=1 CANONICAL=F2Z505-1" }, "locus": { "chromosome": "2", "start_pos": 140504033, "end_pos": 140474153, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015664.5", "url": "https://www.ensembl.org/id/ENSSSCT00000015664.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000015251.2", "url": "https://www.ensembl.org/id/ENSSSCP00000015251.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100520896", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100520896", "resource": "KEGG Pathway" }, { "id": "R-SSC-72764", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72764", "resource": "Reactome", "description": "Eukaryotic Translation Termination" }, { "id": "R-SSC-9629569", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9629569", "resource": "Reactome", "description": "Protein hydroxylation" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1L1RX26-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY", "length": 437 }, "evidence": [ { "id": "F2Z505", "url": "https://omabrowser.org/oma/group/F2Z505/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P62495-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY", "length": 437 }, "evidence": [ { "id": "F2Z505", "url": "https://omabrowser.org/oma/group/F2Z505/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0VCX5-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "ETF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY", "length": 437 }, "evidence": [ { "id": "F2Z505", "url": "https://omabrowser.org/oma/group/F2Z505/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5U2Q7-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "Etf1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY", "length": 437 }, "evidence": [ { "id": "F2Z505", "url": "https://omabrowser.org/oma/group/F2Z505/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BWY3-1", "protein_name": "Eukaryotic peptide chain release factor subunit 1", "gene_name": "Etf1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY", "length": 437 }, "evidence": [ { "id": "F2Z505", "url": "https://omabrowser.org/oma/group/F2Z505/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "peptidyl-tRNA hydrolase activity", "id": "GO:0004045", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004045", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "pmid": "" }, { "name": "sequence-specific mRNA binding", "id": "GO:1990825", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990825", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "pmid": "" }, { "name": "translation release factor activity, codon specific", "id": "GO:0016149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016149", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "regulation of translational termination", "id": "GO:0006449", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006449", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "pmid": "" }, { "name": "cytoplasmic translational termination", "id": "GO:0002184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002184", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "pmid": "" }, { "name": "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay", "id": "GO:0000184", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000184", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "translation release factor complex", "id": "GO:0018444", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0018444", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "pmid": "" }, { "name": "cytosolic ribosome", "id": "GO:0022626", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022626", "evidence": [ { "database": "UniProtKB", "id": "F2Z505", "url": "https://www.uniprot.org/uniprotkb/F2Z505" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z505", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z505" }, { "id": "SM01194", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM01194" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "eRF1/Pelota-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 5, "end_pos": 141, "start_aa": "Pro", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 30, "end_pos": 32 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z510-1", "uniprot_ac": "F2Z510", "uniprot_id": "F2Z510_PIG", "mass": { "chemical_mass": 62620.0, "monoisotopic_mass": 62620.0 }, "refseq": { "ac": "XP_001927221", "name": "transcription factor COE2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927221" }, "gene_names": [ { "name": "EBF2", "type": "recommended", "evidence": [ { "id": "F2Z510", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ] }, { "name": "EBF2", "type": "synonym", "evidence": [ { "id": "XP_001927221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927221" } ] } ], "protein_names": [ { "name": "Transcription factor COE2", "type": "recommended", "evidence": [ { "id": "F2Z510", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z510/entry#names_and_taxonomy" } ] }, { "name": "Early B-cell factor 2", "type": "synonym", "evidence": [ { "id": "F2Z510", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z510/entry#names_and_taxonomy" } ] }, { "name": "transcription factor COE2", "type": "synonym", "evidence": [ { "id": "XP_001927221", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927221" } ] } ], "function": [ { "annotation": "Transcription factor that, in osteoblasts, activates the decoy receptor for RANKL, TNFRSF11B, which in turn regulates osteoclast differentiation. Acts in synergy with the Wnt-responsive LEF1/CTNNB1 pathway. Recognizes variations of the palindromic sequence 5'-ATTCCCNNGGGAATT-3'.", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510#function" }, { "database": "UniProtKB", "id": "ARBA00059343", "url": "https://www.uniprot.org/uniprotkb/ARBA00059343#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EBF2", "url": "https://www.uniprot.org/uniprotkb/F2Z510", "locus": { "chromosome": "14", "start_pos": 9817002, "end_pos": 10025164, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009655", "url": "https://www.ensembl.org/id/ENSSSCG00000009655" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009655", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009655", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01175", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01175", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11606", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11606", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155094", "url": "https://www.ncbi.nlm.nih.gov/gene/100155094", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003523", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003523", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032200", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032200", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038006", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038006", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155094", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155094", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QGYMRNS", "url": "https://omabrowser.org/oma/group/QGYMRNS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z510", "url": "https://www.orthodb.org/?gene=F2Z510", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10747", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10747", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16422", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16422", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16423", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16423", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001927221", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001927221", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z510-1", "url": "https://www.uniprot.org/uniprotkb/F2Z510-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFGIQDTLGRGPALKEKSLGAEMDSVRSWVRNVGVVDANVAAQSGVALSRAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVENDKEQGNEKTNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPIAYEGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQGNNQGYIRNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGNGNGFRAMTGLVVPPM", "length": 575, "header": "tr|F2Z510-1|F2Z510_PIG Isoform 1 of Transcription factor COE2 OS=Sus scrofa OX=9823 GN=EBF2 PE=3 SV=3 CANONICAL=F2Z510-1" }, "isoforms": [ { "isoform_ac": "F2Z510-1", "url": "https://www.uniprot.org/uniprotkb/F2Z510/entry#F2Z510-1", "sequence": { "sequence": "MFGIQDTLGRGPALKEKSLGAEMDSVRSWVRNVGVVDANVAAQSGVALSRAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVENDKEQGNEKTNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPIAYEGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQGNNQGYIRNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGNGNGFRAMTGLVVPPM", "length": 575, "header": "tr|F2Z510-1|F2Z510_PIG Isoform 1 of Transcription factor COE2 OS=Sus scrofa OX=9823 GN=EBF2 PE=3 SV=3 CANONICAL=F2Z510-1" }, "locus": { "chromosome": "14", "start_pos": 10024781, "end_pos": 9819915, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010585.5", "url": "https://www.ensembl.org/id/ENSSSCT00000010585.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010309.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010309.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 252, "start_aa": "Thr", "end_pos": 252, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr252", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155094", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155094", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2LGP9-1", "protein_name": "Transcription factor COE2", "gene_name": "Ebf2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFGIQDTLGRGPALKEKSLGAEMDSVRSWVRNVGVVDANVAAQSGVALSRAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVENDKEQGNEKTNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPIAYEGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQGNNQGYIRNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGNGNGFRAMTGLVVPPM", "length": 575 }, "evidence": [ { "id": "F2Z510", "url": "https://omabrowser.org/oma/group/F2Z510/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D3ZT68-1", "protein_name": "Transcription factor COE2", "gene_name": "Ebf2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFGIQDTLGRGPVLKEKSLGAEMDSVRSWVRNVGVVDANVAAQSGVALSRAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVENDKEQGNEKTNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPIAYEGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQGNNQGYIRNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGNGNGFRAMTGLVVPPM", "length": 575 }, "evidence": [ { "id": "F2Z510", "url": "https://omabrowser.org/oma/group/F2Z510/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1C814-1", "protein_name": "EBF transcription factor 2", "gene_name": "EBF2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFGIQDTLGRGPVLKDKSLGSEMDSVRSWVRNVGVVDANVAAQSGVALSRAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVENDKEQGNEKTNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPITYEGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNPAQIPALSSSPAHSSMMGINSYGSQLGVSISESTQGNNQGYIRNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMSNLGVPGSPGFINGSPTGSPYGIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGNGNGFRAMTGLVVPPM", "length": 575 }, "evidence": [ { "id": "F2Z510", "url": "https://omabrowser.org/oma/group/F2Z510/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O08792-1", "protein_name": "Transcription factor COE2", "gene_name": "Ebf2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFGIQDTLGRGPALKDKSLGAEMDSVRSWVRNVGVVDANVAAQSGVALSRAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVENDKEQGNEKTNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPIAYEGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQGNNQGYIRNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGNGNGFRAMTGLVVPPM", "length": 575 }, "evidence": [ { "id": "F2Z510", "url": "https://omabrowser.org/oma/group/F2Z510/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q08DL5-1", "protein_name": "Transcription factor COE2", "gene_name": "EBF2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFGIQDTLGRGPALKEKSLGAEMDSVRSWVRNVGVVDANVAAQSGVALSRAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVENDKEQGNEKTNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPIAYEGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNPSQIPALSSSPAHSGMMGINSYGSQLGVSISESTQGNNQGYIRNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGNGNGFRAMTGLVVPPM", "length": 575 }, "evidence": [ { "id": "F2Z510", "url": "https://omabrowser.org/oma/group/F2Z510/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9HAK2-1", "protein_name": "Transcription factor COE2", "gene_name": "EBF2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFGIQDTLGRGPTLKEKSLGAEMDSVRSWVRNVGVVDANVAAQSGVALSRAHFEKQPPSNLRKSNFFHFVLALYDRQGQPVEIERTAFVDFVENDKEQGNEKTNNGTHYKLQLLYSNGVRTEQDLYVRLIDSVTKQPIAYEGQNKNPEMCRVLLTHEVMCSRCCEKKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKTAGNPRDMRRFQVVLSTTVNVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEATPCIKAISPSEGWTTGGAMVIIIGDNFFDGLQVVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFIYTALNEPTIDYGFQRLQKVIPRHPGDPERLAKEMLLKRAADLVEALYGTPHNNQDIILKRAADIAEALYSVPRNPSQLPALSSSPAHSGMMGINSYGSQLGVSISESTQGNNQGYIRNTSSISPRGYSSSSTPQQSNYSTSSNSMNGYSNVPMANLGVPGSPGFLNGSPTGSPYGIMSSSPTVGSSSTSSILPFSSSVFPAVKQKSAFAPVIRPQGSPSPACSSGNGNGFRAMTGLVVPPM", "length": 575 }, "evidence": [ { "id": "F2Z510", "url": "https://omabrowser.org/oma/group/F2Z510/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "pmid": "" }, { "name": "positive regulation of cold-induced thermogenesis", "id": "GO:0120162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120162", "evidence": [ { "database": "UniProtKB", "id": "F2Z510", "url": "https://www.uniprot.org/uniprotkb/F2Z510" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" }, { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 235, "end_pos": 237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 452, "end_pos": 454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" }, { "start_pos": 500, "end_pos": 502, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z510", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z510" }, { "id": "SM00429", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00429" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IPT/TIG", "eco_id": "ECO_0000259", "start_pos": 252, "end_pos": 336, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 252 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 105, "end_pos": 107 }, { "start_pos": 173, "end_pos": 175 }, { "start_pos": 235, "end_pos": 237 }, { "start_pos": 452, "end_pos": 454 }, { "start_pos": 471, "end_pos": 473 }, { "start_pos": 500, "end_pos": 502 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z513-1", "uniprot_ac": "F2Z513", "uniprot_id": "F2Z513_PIG", "mass": { "chemical_mass": 22748.0, "monoisotopic_mass": 22748.0 }, "refseq": { "ac": "NP_001231715", "name": "cilia- and flagella-associated protein 20", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231715" }, "gene_names": [ { "name": "CFAP20", "type": "recommended", "evidence": [ { "id": "F2Z513", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ] }, { "name": "C16orf80", "type": "synonym", "evidence": [ { "id": "NP_001231715", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231715" } ] }, { "name": "C6H16orf80", "type": "synonym", "evidence": [ { "id": "NP_001231715", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231715" } ] }, { "name": "CFAP20", "type": "synonym", "evidence": [ { "id": "NP_001231715", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231715" } ] } ], "protein_names": [ { "name": "Cilia and flagella associated protein 20", "type": "synonym", "evidence": [ { "id": "F2Z513", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z513/entry#names_and_taxonomy" } ] }, { "name": "cilia- and flagella-associated protein 20", "type": "synonym", "evidence": [ { "id": "NP_001231715", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231715" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CFAP20", "url": "https://www.uniprot.org/uniprotkb/F2Z513", "locus": { "chromosome": "6", "start_pos": 19954925, "end_pos": 19969347, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002805", "url": "https://www.ensembl.org/id/ENSSSCG00000002805" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002805", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002805", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100513209", "url": "https://www.ncbi.nlm.nih.gov/gene/100513209", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "9CPC", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=9CPC&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR007714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100513209", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513209", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "TTYISCP", "url": "https://omabrowser.org/oma/group/TTYISCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z513", "url": "https://www.orthodb.org/?gene=F2Z513", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12458", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12458", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00009cpc", "url": "https://www.rcsb.org/structure/pdb_00009cpc", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "9CPC", "url": "https://www.rcsb.org/structure/9CPC", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF05018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231715", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231715", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z513-1", "url": "https://www.uniprot.org/uniprotkb/F2Z513-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ", "length": 193, "header": "tr|F2Z513-1|F2Z513_PIG Isoform 1 of Cilia and flagella associated protein 20 OS=Sus scrofa OX=9823 GN=CFAP20 PE=1 SV=1 CANONICAL=F2Z513-1" }, "isoforms": [ { "isoform_ac": "F2Z513-1", "url": "https://www.uniprot.org/uniprotkb/F2Z513/entry#F2Z513-1", "sequence": { "sequence": "MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ", "length": 193, "header": "tr|F2Z513-1|F2Z513_PIG Isoform 1 of Cilia and flagella associated protein 20 OS=Sus scrofa OX=9823 GN=CFAP20 PE=1 SV=1 CANONICAL=F2Z513-1" }, "locus": { "chromosome": "6", "start_pos": 19969124, "end_pos": 19955127, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003105.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003105.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003025.2", "url": "https://www.ensembl.org/id/ENSSSCP00000003025.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] }, { "title": "Structural diversity of axonemes across mammalian motile cilia.", "journal": "Nature", "date": "2025", "authors": "Leung Miguel Ricardo, Sun Chen, Zeng Jianwei, Anderson Jacob R, Niu Qingwei, Huang Wei, Noteborn Willem E M, Brown Alan, Zeev-Ben-Mordehai Tzviya, Zhang Rui", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "reference": [ { "type": "PubMed", "id": "39743588", "url": "https://glygen.org/publication/PubMed/39743588" } ] } ], "pathway": [ { "id": "ssc:100513209", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100513209", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q499T7-1", "protein_name": "Cilia- and flagella-associated protein 20", "gene_name": "Cfap20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYDPCKLSYPKGLLLRQTLLRG", "length": 164 }, "evidence": [ { "id": "F2Z513", "url": "https://omabrowser.org/oma/group/F2Z513/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5ZHP3-1", "protein_name": "Cilia- and flagella-associated protein 20", "gene_name": "CFAP20", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MFKNTFQSGFLSVLYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ", "length": 193 }, "evidence": [ { "id": "F2Z513", "url": "https://omabrowser.org/oma/group/F2Z513/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q6B857-1", "protein_name": "Cilia- and flagella-associated protein 20", "gene_name": "CFAP20", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ", "length": 193 }, "evidence": [ { "id": "F2Z513", "url": "https://omabrowser.org/oma/group/F2Z513/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PBJ2-1", "protein_name": "Cilia- and flagella-associated protein 20", "gene_name": "cfap20", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEVEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAK", "length": 192 }, "evidence": [ { "id": "F2Z513", "url": "https://omabrowser.org/oma/group/F2Z513/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8BTU1-1", "protein_name": "Cilia- and flagella-associated protein 20", "gene_name": "Cfap20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ", "length": 193 }, "evidence": [ { "id": "F2Z513", "url": "https://omabrowser.org/oma/group/F2Z513/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9VKV8-1", "protein_name": "Cilia- and flagella-associated protein 20", "gene_name": "Bug22", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFKNTFQSGFLSILYSIGSKPLQLWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADPKKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPPEFKLFLPIQKPVQKSNAICS", "length": 199 }, "evidence": [ { "id": "F2Z513", "url": "https://omabrowser.org/oma/group/F2Z513/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y6A4-1", "protein_name": "Cilia- and flagella-associated protein 20", "gene_name": "CFAP20", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLLDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPAEFKLYLPVQNKAKQ", "length": 193 }, "evidence": [ { "id": "F2Z513", "url": "https://omabrowser.org/oma/group/F2Z513/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" }, { "name": "motile cilium", "id": "GO:0031514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031514", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" }, { "name": "sperm flagellum", "id": "GO:0036126", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036126", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" }, { "name": "centriole", "id": "GO:0005814", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005814", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" }, { "name": "ciliary basal body", "id": "GO:0036064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036064", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" }, { "name": "axonemal B tubule inner sheath", "id": "GO:0160112", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160112", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" }, { "name": "cilium assembly", "id": "GO:0060271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060271", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" }, { "name": "positive regulation of feeding behavior", "id": "GO:2000253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000253", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" }, { "name": "positive regulation of cell motility", "id": "GO:2000147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000147", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" }, { "name": "regulation of cilium beat frequency involved in ciliary motility", "id": "GO:0060296", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060296", "evidence": [ { "database": "UniProtKB", "id": "F2Z513", "url": "https://www.uniprot.org/uniprotkb/F2Z513" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 53, "end_pos": 55, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z513", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z513" }, { "id": "PF05018", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05018" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CFA20", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 184, "start_aa": "Met", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 135, "end_pos": 137 }, { "start_pos": 53, "end_pos": 55 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z518-1", "uniprot_ac": "F2Z518", "uniprot_id": "F2Z518_PIG", "mass": { "chemical_mass": 13508.0, "monoisotopic_mass": 13508.0 }, "refseq": { "ac": "NP_001230556", "name": "ragulator complex protein LAMTOR2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230556" }, "gene_names": [ { "name": "LAMTOR2", "type": "recommended", "evidence": [ { "id": "F2Z518", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ] }, { "name": "LAMTOR2", "type": "synonym", "evidence": [ { "id": "NP_001230556", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230556" } ] } ], "protein_names": [ { "name": "Ragulator complex protein LAMTOR2", "type": "recommended", "evidence": [ { "id": "F2Z518", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z518/entry#names_and_taxonomy" } ] }, { "name": "Late endosomal/lysosomal adaptor and MAPK and MTOR activator 2", "type": "synonym", "evidence": [ { "id": "F2Z518", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z518/entry#names_and_taxonomy" } ] }, { "name": "ragulator complex protein LAMTOR2", "type": "synonym", "evidence": [ { "id": "NP_001230556", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230556" } ] } ], "function": [ { "annotation": "As part of the Ragulator complex it is involved in amino acid sensing and activation of mTORC1, a signaling complex promoting cell growth in response to growth factors, energy levels, and amino acids. Activated by amino acids through a mechanism involving the lysosomal V-ATPase, the Ragulator plays a dual role for the small GTPases Rag (RagA/RRAGA, RagB/RRAGB, RagC/RRAGC and/or RagD/RRAGD): it (1) acts as a guanine nucleotide exchange factor (GEF), activating the small GTPases Rag and (2) mediates recruitment of Rag GTPases to the lysosome membrane. Activated Ragulator and Rag GTPases function as a scaffold recruiting mTORC1 to lysosomes where it is in turn activated. Adapter protein that enhances the efficiency of the MAP kinase cascade facilitating the activation of MAPK2.", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518#function" }, { "database": "UniProtKB", "id": "ARBA00045176", "url": "https://www.uniprot.org/uniprotkb/ARBA00045176#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LAMTOR2", "url": "https://www.uniprot.org/uniprotkb/F2Z518", "locus": { "chromosome": "4", "start_pos": 93971871, "end_pos": 93976304, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006499", "url": "https://www.ensembl.org/id/ENSSSCG00000006499" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006499", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006499", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100156749", "url": "https://www.ncbi.nlm.nih.gov/gene/100156749", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037587", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037587", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156749", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156749", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WAAYEKN", "url": "https://omabrowser.org/oma/group/WAAYEKN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z518", "url": "https://www.orthodb.org/?gene=F2Z518", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13323", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13323", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03259", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03259", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1632852", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-165159", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-165159", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-166208", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-166208", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-380972", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380972", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5628897", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5674135", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8943724", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8943724", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9639288", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9639288", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230556", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230556", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z518-1", "url": "https://www.uniprot.org/uniprotkb/F2Z518-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS", "length": 125, "header": "tr|F2Z518-1|F2Z518_PIG Isoform 1 of Ragulator complex protein LAMTOR2 OS=Sus scrofa OX=9823 GN=LAMTOR2 PE=1 SV=1 CANONICAL=F2Z518-1" }, "isoforms": [ { "isoform_ac": "F2Z518-1", "url": "https://www.uniprot.org/uniprotkb/F2Z518/entry#F2Z518-1", "sequence": { "sequence": "MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS", "length": 125, "header": "tr|F2Z518-1|F2Z518_PIG Isoform 1 of Ragulator complex protein LAMTOR2 OS=Sus scrofa OX=9823 GN=LAMTOR2 PE=1 SV=1 CANONICAL=F2Z518-1" }, "locus": { "chromosome": "4", "start_pos": 93975353, "end_pos": 93972255, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007118.4", "url": "https://www.ensembl.org/id/ENSSSCT00000007118.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000006926.2", "url": "https://www.ensembl.org/id/ENSSSCP00000006926.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156749", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156749", "resource": "KEGG Pathway" }, { "id": "R-SSC-1632852", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1632852", "resource": "Reactome", "description": "Macroautophagy" }, { "id": "R-SSC-165159", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-165159", "resource": "Reactome", "description": "MTOR signalling" }, { "id": "R-SSC-166208", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-166208", "resource": "Reactome", "description": "mTORC1-mediated signalling" }, { "id": "R-SSC-380972", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-380972", "resource": "Reactome", "description": "Energy dependent regulation of mTOR by LKB1-AMPK" }, { "id": "R-SSC-5628897", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5628897", "resource": "Reactome", "description": "TP53 Regulates Metabolic Genes" }, { "id": "R-SSC-5674135", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5674135", "resource": "Reactome", "description": "MAP2K and MAPK activation" }, { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-8943724", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8943724", "resource": "Reactome", "description": "Regulation of PTEN gene transcription" }, { "id": "R-SSC-9639288", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9639288", "resource": "Reactome", "description": "Amino acids regulate mTORC1" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1B0GWT7-1", "protein_name": "Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2", "gene_name": "Lamtor2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "PESGASSQPHSAPPCRRPAARQPAQLLLLLLLLARPARLGSGASNSPSRPSPRLRRPLRTAAATAPRAAWGGTAVGAARARAGCAAGPGRIVRPAQRAGDSGPPAVPSRLDKGLSVSPSHLRSPRLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMDQRNPGEGRNQGCQAECPSVLCHSHQEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS", "length": 253 }, "evidence": [ { "id": "F2Z518", "url": "https://omabrowser.org/oma/group/F2Z518/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V1AEX1-1", "protein_name": "Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2", "gene_name": "LAMTOR2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWVAYDKNGHHAFNEDNLRFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS", "length": 125 }, "evidence": [ { "id": "F2Z518", "url": "https://omabrowser.org/oma/group/F2Z518/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3HG98-1", "protein_name": "Ragulator complex protein LAMTOR2", "gene_name": "Lamtor2", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS", "length": 125 }, "evidence": [ { "id": "F2Z518", "url": "https://omabrowser.org/oma/group/F2Z518/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q3T132-1", "protein_name": "Ragulator complex protein LAMTOR2", "gene_name": "LAMTOR2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS", "length": 125 }, "evidence": [ { "id": "F2Z518", "url": "https://omabrowser.org/oma/group/F2Z518/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54F59-1", "protein_name": "Roadblock/LAMTOR2 domain-containing protein", "gene_name": "mapbpip", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLRSKILPQILNQAINNTDTKGVLLMKDDGSLIACSDATTSSHNTSKIVAAITSNIWTAYNRNSDLQYQLIDCEEGRFVITRVASLLLCVYSDINTEFGLLKLKTQKLREYLEEPLSKVEHVQ", "length": 123 }, "evidence": [ { "id": "F2Z518", "url": "https://omabrowser.org/oma/group/F2Z518/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q6DEG4-1", "protein_name": "Ragulator complex protein LAMTOR2", "gene_name": "lamtor2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRPKALTQVLSQANTSGVQSTLLLNNEGSLLTYSGYGDTDARVTAAIASNIWAAYDKNGHQAFNEDKLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAEALVQYLEEPLTQVAAS", "length": 125 }, "evidence": [ { "id": "F2Z518", "url": "https://omabrowser.org/oma/group/F2Z518/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9JHS3-1", "protein_name": "Ragulator complex protein LAMTOR2", "gene_name": "Lamtor2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS", "length": 125 }, "evidence": [ { "id": "F2Z518", "url": "https://omabrowser.org/oma/group/F2Z518/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9V8I2-1", "protein_name": "Ragulator complex protein LAMTOR2 homolog", "gene_name": "Lamtor2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLKPKALTQVLSQANTGGVENTLLLSQEGALLAYSGYGDKDARITAAIASNIWAAYEKHGRNAFREGRLTFVLIDCENGHVAITQVASVLLCLYAKQTVGLGLLKQKAMSLASYLERPLKQISAS", "length": 125 }, "evidence": [ { "id": "F2Z518", "url": "https://omabrowser.org/oma/group/F2Z518/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y2Q5-1", "protein_name": "Ragulator complex protein LAMTOR2", "gene_name": "LAMTOR2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPLTQVAAS", "length": 125 }, "evidence": [ { "id": "F2Z518", "url": "https://omabrowser.org/oma/group/F2Z518/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of TORC1 signaling", "id": "GO:1904263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904263", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" }, { "name": "regulation of cell growth", "id": "GO:0001558", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001558", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" }, { "name": "positive regulation of TOR signaling", "id": "GO:0032008", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032008", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" }, { "name": "cellular response to amino acid stimulus", "id": "GO:0071230", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071230", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" }, { "name": "regulation of cell-substrate junction organization", "id": "GO:0150116", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0150116", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "molecular adaptor activity", "id": "GO:0060090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060090", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" }, { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" }, { "name": "late endosome membrane", "id": "GO:0031902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031902", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" }, { "name": "Ragulator complex", "id": "GO:0071986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071986", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" }, { "name": "FNIP-folliculin RagC/D GAP", "id": "GO:1990877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990877", "evidence": [ { "database": "UniProtKB", "id": "F2Z518", "url": "https://www.uniprot.org/uniprotkb/F2Z518" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z518", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z518" }, { "id": "SM00960", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00960" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Roadblock/LAMTOR2", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 95, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z520-1", "uniprot_ac": "F2Z520", "uniprot_id": "F2Z520_PIG", "mass": { "chemical_mass": 28580.0, "monoisotopic_mass": 28580.0 }, "refseq": { "ac": "XP_020921444", "name": "transcription factor SOX-21", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921444" }, "gene_names": [ { "name": "SOX21", "type": "recommended", "evidence": [ { "id": "F2Z520", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ] }, { "name": "SOX21", "type": "synonym", "evidence": [ { "id": "XP_020921444", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921444" } ] } ], "protein_names": [ { "name": "SRY-box transcription factor 21", "type": "synonym", "evidence": [ { "id": "F2Z520", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z520/entry#names_and_taxonomy" } ] }, { "name": "transcription factor SOX-21", "type": "synonym", "evidence": [ { "id": "XP_020921444", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921444" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SOX21", "url": "https://www.uniprot.org/uniprotkb/F2Z520", "locus": { "chromosome": "11", "start_pos": 63825637, "end_pos": 63826467, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009494", "url": "https://www.ensembl.org/id/ENSSSCG00000009494" } ] } } ], "crossref": [ { "id": "F2Z520", "url": "https://alphafold.ebi.ac.uk/entry/F2Z520", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009494", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009494", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01388", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01388", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100517115", "url": "https://www.ncbi.nlm.nih.gov/gene/100517115", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022097", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022097", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050140", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050140", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100517115", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517115", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "LHGHEAF", "url": "https://omabrowser.org/oma/group/LHGHEAF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z520", "url": "https://www.orthodb.org/?gene=F2Z520", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10270", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10270", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10270:SF313", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10270:SF313", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00505", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00505", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12336", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12336", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020921444", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020921444", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z520-1", "url": "https://www.uniprot.org/uniprotkb/F2Z520-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGGVADAEHPALKAGAGLHAGAGGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL", "length": 276, "header": "tr|F2Z520-1|F2Z520_PIG Isoform 1 of SRY-box transcription factor 21 OS=Sus scrofa OX=9823 GN=SOX21 PE=4 SV=3 CANONICAL=F2Z520-1" }, "isoforms": [ { "isoform_ac": "F2Z520-1", "url": "https://www.uniprot.org/uniprotkb/F2Z520/entry#F2Z520-1", "sequence": { "sequence": "MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGGVADAEHPALKAGAGLHAGAGGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL", "length": 276, "header": "tr|F2Z520-1|F2Z520_PIG Isoform 1 of SRY-box transcription factor 21 OS=Sus scrofa OX=9823 GN=SOX21 PE=4 SV=3 CANONICAL=F2Z520-1" }, "locus": { "chromosome": "11", "start_pos": 63826467, "end_pos": 63825640, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010410.3", "url": "https://www.ensembl.org/id/ENSSSCT00000010410.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000010139.3", "url": "https://www.ensembl.org/id/ENSSSCP00000010139.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100517115", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100517115", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BHN5-1", "protein_name": "SRY-box transcription factor 21", "gene_name": "SOX21", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGGVADAEHPALKAGAGLHAGAGSGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL", "length": 277 }, "evidence": [ { "id": "F2Z520", "url": "https://omabrowser.org/oma/group/F2Z520/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6RVD7-1", "protein_name": "Transcription factor Sox-21-B", "gene_name": "sox21b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSKPMDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLMKKDKFAFPVAYNLGEHEALKVGGLPAGALTESLMSNPDKAAAAAAAAAARVFFNPSMSANPYSFFDLGSKMTELSPPSFSYASPLGYPTAATAFSGAVGGGAHTHTHSHPSPGNPGYMIPCNCAAWPSAGLQPPLAYILLPGMGKPQLEPYPAYAAAL", "length": 245 }, "evidence": [ { "id": "F2Z520", "url": "https://omabrowser.org/oma/group/F2Z520/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q811W0-1", "protein_name": "Transcription factor SOX-21", "gene_name": "Sox21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGSVADAEHPALKAGAGLHAGAGGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL", "length": 276 }, "evidence": [ { "id": "F2Z520", "url": "https://omabrowser.org/oma/group/F2Z520/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9W7R5-1", "protein_name": "Transcription factor SOX-21", "gene_name": "SOX21", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGAVAEHEPPHGLKAAALHGGAAGGLGPDSLLGNPEKAAAAAAAAAARVFFPQSAAAAAAAAAAAAAGGPYSLLDLGSKMAEISSSSSAGSALPYASSLGYPGAGGAGAFHGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPGPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL", "length": 280 }, "evidence": [ { "id": "F2Z520", "url": "https://omabrowser.org/oma/group/F2Z520/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9Y651-1", "protein_name": "Transcription factor SOX-21", "gene_name": "SOX21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGGVADAEHPALKAGAGLHAGAGGGLVPESLLANPEKAAAAAAAAAARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL", "length": 276 }, "evidence": [ { "id": "F2Z520", "url": "https://omabrowser.org/oma/group/F2Z520/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "pmid": "" }, { "name": "stem cell differentiation", "id": "GO:0048863", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048863", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "pmid": "" }, { "name": "brain development", "id": "GO:0007420", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007420", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "pmid": "" }, { "name": "neuron differentiation", "id": "GO:0030182", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030182", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "F2Z520", "url": "https://www.uniprot.org/uniprotkb/F2Z520" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 239, "end_pos": 241, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z520-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 276, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z520-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z520" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z520", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z520" }, { "id": "PS50118", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMG box", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 76, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 239, "end_pos": 241 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z522-1", "uniprot_ac": "F2Z522", "uniprot_id": "F2Z522_PIG", "mass": { "chemical_mass": 12479.0, "monoisotopic_mass": 12479.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Large ribosomal subunit protein uL23", "type": "recommended", "evidence": [ { "id": "F2Z522", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z522/entry#names_and_taxonomy" } ] }, { "name": "60S ribosomal protein L23a", "type": "synonym", "evidence": [ { "id": "F2Z522", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z522/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. Binds a specific region on the 26S rRNA. May promote p53/TP53 degradation possibly through the stimulation of MDM2-mediated TP53 polyubiquitination.", "evidence": [ { "database": "UniProtKB", "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522#function" }, { "database": "UniProtKB", "id": "ARBA00045456", "url": "https://www.uniprot.org/uniprotkb/ARBA00045456#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F2Z522", "locus": {} } ], "crossref": [ { "id": "F2Z522", "url": "https://alphafold.ebi.ac.uk/entry/F2Z522", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017768", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017768", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "3J7O", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7O&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "3J7P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012678", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012678", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11620", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11620", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00003j7o", "url": "https://www.rcsb.org/structure/pdb_00003j7o", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "pdb_00003j7p", "url": "https://www.rcsb.org/structure/pdb_00003j7p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7O", "url": "https://www.rcsb.org/structure/3J7O", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7P", "url": "https://www.rcsb.org/structure/3J7P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF00276", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00276", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z522-1", "url": "https://www.uniprot.org/uniprotkb/F2Z522-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VKKEDPAPPEAETKAKASKAKNTVLRQPKYPRKSAPRRSKLDHCASIKFPLTTESAMKKTEDNNTLVFIADVKVNKQQIQQAVRKFYDIDVAKVNTLIRPDGEKKAYVRL", "length": 110, "header": "tr|F2Z522-1|F2Z522_PIG Isoform 1 of Large ribosomal subunit protein uL23 OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F2Z522-1" }, "isoforms": [ { "isoform_ac": "F2Z522-1", "url": "https://www.uniprot.org/uniprotkb/F2Z522/entry#F2Z522-1", "sequence": { "sequence": "VKKEDPAPPEAETKAKASKAKNTVLRQPKYPRKSAPRRSKLDHCASIKFPLTTESAMKKTEDNNTLVFIADVKVNKQQIQQAVRKFYDIDVAKVNTLIRPDGEKKAYVRL", "length": 110, "header": "tr|F2Z522-1|F2Z522_PIG Isoform 1 of Large ribosomal subunit protein uL23 OS=Sus scrofa OX=9823 GN= PE=1 SV=4 CANONICAL=F2Z522-1" }, "locus": { "chromosome": "10", "start_pos": 13620074, "end_pos": 13619667, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019340.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019340.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018827.5", "url": "https://www.ensembl.org/id/ENSSSCP00000018827.5" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structure of the mammalian ribosome-Sec61 complex to 3.4 A resolution.", "journal": "Cell", "date": "2014", "authors": "Voorhees Rebecca M, Fern\u00e1ndez Israel S, Scheres Sjors H W, Hegde Ramanujan S", "evidence": [ { "database": "UniProtKB", "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522" } ], "reference": [ { "type": "PubMed", "id": "24930395", "url": "https://glygen.org/publication/PubMed/24930395" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522" } ], "pmid": "" }, { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "rRNA binding", "id": "GO:0019843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019843", "evidence": [ { "database": "UniProtKB", "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F2Z522", "url": "https://www.uniprot.org/uniprotkb/F2Z522" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z522-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 110, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z522-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z522" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z552-1", "uniprot_ac": "F2Z552", "uniprot_id": "F2Z552_PIG", "mass": { "chemical_mass": 24608.0, "monoisotopic_mass": 24608.0 }, "refseq": { "ac": "XP_003135565", "name": "ras-related protein Rab-39B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135565" }, "gene_names": [ { "name": "RAB39B", "type": "recommended", "evidence": [ { "id": "F2Z552", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ] }, { "name": "RAB39B", "type": "synonym", "evidence": [ { "id": "XP_003135565", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135565" } ] } ], "protein_names": [ { "name": "RAB39B, member RAS onco family", "type": "synonym", "evidence": [ { "id": "F2Z552", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z552/entry#names_and_taxonomy" } ] }, { "name": "ras-related protein Rab-39B", "type": "synonym", "evidence": [ { "id": "XP_003135565", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135565" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RAB39B", "url": "https://www.uniprot.org/uniprotkb/F2Z552", "locus": { "chromosome": "X", "start_pos": 125520497, "end_pos": 125527379, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024233", "url": "https://www.ensembl.org/id/ENSSSCG00000024233" } ] } } ], "crossref": [ { "id": "F2Z552", "url": "https://alphafold.ebi.ac.uk/entry/F2Z552", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024233", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024233", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd04111", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04111", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516775", "url": "https://www.ncbi.nlm.nih.gov/gene/100516775", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041818", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041818", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050209", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050209", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516775", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516775", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XSITRAY", "url": "https://omabrowser.org/oma/group/XSITRAY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z552", "url": "https://www.orthodb.org/?gene=F2Z552", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47979", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47979", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8876198", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003135565", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003135565", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z552-1", "url": "https://www.uniprot.org/uniprotkb/F2Z552-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC", "length": 213, "header": "tr|F2Z552-1|F2Z552_PIG Isoform 1 of RAB39B, member RAS onco family OS=Sus scrofa OX=9823 GN=RAB39B PE=1 SV=1 CANONICAL=F2Z552-1" }, "isoforms": [ { "isoform_ac": "F2Z552-1", "url": "https://www.uniprot.org/uniprotkb/F2Z552/entry#F2Z552-1", "sequence": { "sequence": "MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC", "length": 213, "header": "tr|F2Z552-1|F2Z552_PIG Isoform 1 of RAB39B, member RAS onco family OS=Sus scrofa OX=9823 GN=RAB39B PE=1 SV=1 CANONICAL=F2Z552-1" }, "locus": { "chromosome": "X", "start_pos": 125527176, "end_pos": 125523151, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022617.4", "url": "https://www.ensembl.org/id/ENSSSCT00000022617.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000020030.1", "url": "https://www.ensembl.org/id/ENSSSCP00000020030.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516775", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516775", "resource": "KEGG Pathway" }, { "id": "R-SSC-8876198", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8876198", "resource": "Reactome", "description": "RAB GEFs exchange GTP for GDP on RABs" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HV84-1", "protein_name": "Ras-related protein Rab-39B", "gene_name": "Rab39b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEISIQEGWEGVKSGFVPNVVHSSEEVIKSERRCLC", "length": 213 }, "evidence": [ { "id": "F2Z552", "url": "https://omabrowser.org/oma/group/F2Z552/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q17QU4-1", "protein_name": "Ras-related protein Rab-39B", "gene_name": "RAB39B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC", "length": 213 }, "evidence": [ { "id": "F2Z552", "url": "https://omabrowser.org/oma/group/F2Z552/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BHC1-1", "protein_name": "Ras-related protein Rab-39B", "gene_name": "Rab39b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKSGFVPNVVHSSEEVIKSERRCLC", "length": 213 }, "evidence": [ { "id": "F2Z552", "url": "https://omabrowser.org/oma/group/F2Z552/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96DA2-1", "protein_name": "Ras-related protein Rab-39B", "gene_name": "RAB39B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC", "length": 213 }, "evidence": [ { "id": "F2Z552", "url": "https://omabrowser.org/oma/group/F2Z552/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" }, { "name": "myosin V binding", "id": "GO:0031489", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031489", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" }, { "name": "cytoplasmic vesicle membrane", "id": "GO:0030659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030659", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" }, { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" }, { "name": "autolysosome membrane", "id": "GO:0120281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120281", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "regulation of autophagy", "id": "GO:0010506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010506", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" }, { "name": "autophagy", "id": "GO:0006914", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006914", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" }, { "name": "Rab protein signal transduction", "id": "GO:0032482", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032482", "evidence": [ { "database": "UniProtKB", "id": "F2Z552", "url": "https://www.uniprot.org/uniprotkb/F2Z552" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z552-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 213, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z552-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z552" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z553-1", "uniprot_ac": "F2Z553", "uniprot_id": "F2Z553_PIG", "mass": { "chemical_mass": 12732.0, "monoisotopic_mass": 12732.0 }, "refseq": { "ac": "XP_003483030", "name": "eukaryotic translation initiation factor 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483030" }, "gene_names": [ { "name": "EIF1", "type": "recommended", "evidence": [ { "id": "F2Z553", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ] }, { "name": "EIF1", "type": "synonym", "evidence": [ { "id": "XP_003483030", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483030" } ] } ], "protein_names": [ { "name": "Eukaryotic translation initiation factor 1", "type": "synonym", "evidence": [ { "id": "F2Z553", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z553/entry#names_and_taxonomy" } ] }, { "name": "eukaryotic translation initiation factor 1", "type": "synonym", "evidence": [ { "id": "XP_003483030", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483030" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "EIF1", "url": "https://www.uniprot.org/uniprotkb/F2Z553", "locus": { "chromosome": "12", "start_pos": 20974503, "end_pos": 20977075, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017430", "url": "https://www.ensembl.org/id/ENSSSCG00000017430" } ] } } ], "crossref": [ { "id": "F2Z553", "url": "https://alphafold.ebi.ac.uk/entry/F2Z553", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000017430", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017430", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11566", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11566", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100736981", "url": "https://www.ncbi.nlm.nih.gov/gene/100736981", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001950", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001950", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100736981", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736981", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VENHIHI", "url": "https://omabrowser.org/oma/group/VENHIHI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z553", "url": "https://www.orthodb.org/?gene=F2Z553", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10388", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10388", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01253", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01253", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003483030", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003483030", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z553-1", "url": "https://www.uniprot.org/uniprotkb/F2Z553-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF", "length": 113, "header": "tr|F2Z553-1|F2Z553_PIG Isoform 1 of Eukaryotic translation initiation factor 1 OS=Sus scrofa OX=9823 GN=EIF1 PE=1 SV=3 CANONICAL=F2Z553-1" }, "isoforms": [ { "isoform_ac": "F2Z553-1", "url": "https://www.uniprot.org/uniprotkb/F2Z553/entry#F2Z553-1", "sequence": { "sequence": "MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF", "length": 113, "header": "tr|F2Z553-1|F2Z553_PIG Isoform 1 of Eukaryotic translation initiation factor 1 OS=Sus scrofa OX=9823 GN=EIF1 PE=1 SV=3 CANONICAL=F2Z553-1" }, "locus": { "chromosome": "12", "start_pos": 20976912, "end_pos": 20975301, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018976.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018976.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000018471.4", "url": "https://www.ensembl.org/id/ENSSSCP00000018471.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100736981", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100736981", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F2Z553", "url": "https://omabrowser.org/oma/group/F2Z553/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3HLU5-1", "protein_name": "Eukaryotic translation initiation factor 1 isoform X2", "gene_name": "Eif1", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 113 }, "evidence": [ { "id": "F2Z553", "url": "https://omabrowser.org/oma/group/F2Z553/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P41567-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "EIF1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF", "length": 113 }, "evidence": [ { "id": "F2Z553", "url": "https://omabrowser.org/oma/group/F2Z553/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P48024-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 113 }, "evidence": [ { "id": "F2Z553", "url": "https://omabrowser.org/oma/group/F2Z553/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P51971-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "EIF1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAIQNLQPFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF", "length": 113 }, "evidence": [ { "id": "F2Z553", "url": "https://omabrowser.org/oma/group/F2Z553/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5E938-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "EIF1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF", "length": 113 }, "evidence": [ { "id": "F2Z553", "url": "https://omabrowser.org/oma/group/F2Z553/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q86AU4-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "eIF1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSIQNLNSADPFAEDSNLGGDSGISYVHIRIFQRSGRKAVTTVEGLPPKIDLKKILKHLKKSLNCNGNIVEEENLGMIIKLQGDKRKEIALFLIEEKISQKPSIKIHGF", "length": 110 }, "evidence": [ { "id": "F2Z553", "url": "https://omabrowser.org/oma/group/F2Z553/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9VZS3-1", "protein_name": "Eukaryotic translation initiation factor eIF1", "gene_name": "eIF1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSIQNLNTRDPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF", "length": 110 }, "evidence": [ { "id": "F2Z553", "url": "https://omabrowser.org/oma/group/F2Z553/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "pmid": "" }, { "name": "ribosomal small subunit binding", "id": "GO:0043024", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043024", "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "pmid": "" }, { "name": "translation initiation factor activity", "id": "GO:0003743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003743", "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "pmid": "" }, { "name": "eukaryotic 43S preinitiation complex", "id": "GO:0016282", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016282", "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "pmid": "" }, { "name": "eukaryotic 48S preinitiation complex", "id": "GO:0033290", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0033290", "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "pmid": "" }, { "name": "multi-eIF complex", "id": "GO:0043614", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043614", "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of translational initiation", "id": "GO:0006446", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006446", "evidence": [ { "database": "UniProtKB", "id": "F2Z553", "url": "https://www.uniprot.org/uniprotkb/F2Z553" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z553-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 113, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z553-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z553" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z553", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z553" }, { "id": "PS50296", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50296" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SUI1", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 101, "start_aa": "Ile", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 70, "end_pos": 72 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z561-1", "uniprot_ac": "F2Z561", "uniprot_id": "F2Z561_PIG", "mass": { "chemical_mass": 22245.0, "monoisotopic_mass": 22245.0 }, "refseq": { "ac": "NP_001231394", "name": "neurocalcin-delta", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231394" }, "gene_names": [ { "name": "NCALD", "type": "recommended", "evidence": [ { "id": "F2Z561", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z561" } ] }, { "name": "NCALD", "type": "synonym", "evidence": [ { "id": "NP_001231394", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231394" } ] } ], "protein_names": [ { "name": "Neurocalcin-delta", "type": "recommended", "evidence": [ { "id": "F2Z561", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z561/entry#names_and_taxonomy" } ] }, { "name": "neurocalcin-delta", "type": "synonym", "evidence": [ { "id": "NP_001231394", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231394" } ] } ], "function": [ { "annotation": "May be involved in the calcium-dependent regulation of rhodopsin phosphorylation. Binds three calcium ions.", "evidence": [ { "database": "UniProtKB", "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561#function" }, { "database": "UniProtKB", "id": "ARBA00037437", "url": "https://www.uniprot.org/uniprotkb/ARBA00037437#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "NCALD", "url": "https://www.uniprot.org/uniprotkb/F2Z561", "locus": { "chromosome": "4", "start_pos": 35367412, "end_pos": 35186182, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006059", "url": "https://www.ensembl.org/id/ENSSSCG00000006059" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006059", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006059", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00051", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00051", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156785", "url": "https://www.ncbi.nlm.nih.gov/gene/100156785", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156785", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156785", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MGCVCMK", "url": "https://omabrowser.org/oma/group/MGCVCMK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z561", "url": "https://www.orthodb.org/?gene=F2Z561", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23055:SF87", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23055:SF87", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-451308", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-451308", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231394", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231394", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z561-1", "url": "https://www.uniprot.org/uniprotkb/F2Z561-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQF", "length": 193, "header": "tr|F2Z561-1|F2Z561_PIG Isoform 1 of Neurocalcin-delta OS=Sus scrofa OX=9823 GN=NCALD PE=1 SV=1 CANONICAL=F2Z561-1" }, "isoforms": [ { "isoform_ac": "F2Z561-1", "url": "https://www.uniprot.org/uniprotkb/F2Z561/entry#F2Z561-1", "sequence": { "sequence": "MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQF", "length": 193, "header": "tr|F2Z561-1|F2Z561_PIG Isoform 1 of Neurocalcin-delta OS=Sus scrofa OX=9823 GN=NCALD PE=1 SV=1 CANONICAL=F2Z561-1" }, "locus": { "chromosome": "4", "start_pos": 35366679, "end_pos": 35345554, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000033719.4", "url": "https://www.ensembl.org/id/ENSSSCT00000033719.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000029615.1", "url": "https://www.ensembl.org/id/ENSSSCP00000029615.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156785", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156785", "resource": "KEGG Pathway" }, { "id": "R-SSC-451308", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-451308", "resource": "Reactome", "description": "Activation of Ca-permeable Kainate Receptor" } ], "orthologs": [ { "uniprot_canonical_ac": "A9JTH1-1", "protein_name": "Neurocalcin-delta A", "gene_name": "ncalda", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGNLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIKGAKTDPSIVRLLQCDPSSAGQF", "length": 193 }, "evidence": [ { "id": "F2Z561", "url": "https://omabrowser.org/oma/group/F2Z561/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P42325-1", "protein_name": "Neurocalcin homolog", "gene_name": "Nca", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGKQNSKLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVTAIYKMVGSVMKMPEDESTPEKRTDKIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQSH", "length": 190 }, "evidence": [ { "id": "F2Z561", "url": "https://omabrowser.org/oma/group/F2Z561/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "P61601-1", "protein_name": "Neurocalcin-delta", "gene_name": "NCALD", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQF", "length": 193 }, "evidence": [ { "id": "F2Z561", "url": "https://omabrowser.org/oma/group/F2Z561/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P61602-1", "protein_name": "Neurocalcin-delta", "gene_name": "NCALD", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQF", "length": 193 }, "evidence": [ { "id": "F2Z561", "url": "https://omabrowser.org/oma/group/F2Z561/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P62758-1", "protein_name": "Neurocalcin-delta", "gene_name": "NCALD", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKSEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQF", "length": 193 }, "evidence": [ { "id": "F2Z561", "url": "https://omabrowser.org/oma/group/F2Z561/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5PQN0-1", "protein_name": "Neurocalcin-delta", "gene_name": "Ncald", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQF", "length": 193 }, "evidence": [ { "id": "F2Z561", "url": "https://omabrowser.org/oma/group/F2Z561/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q91X97-1", "protein_name": "Neurocalcin-delta", "gene_name": "Ncald", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGKQNSKLRPEVMQDLLESTDFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLLQCDPSSAGQF", "length": 193 }, "evidence": [ { "id": "F2Z561", "url": "https://omabrowser.org/oma/group/F2Z561/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561" } ], "pmid": "" }, { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561" } ], "pmid": "" }, { "name": "clathrin binding", "id": "GO:0030276", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030276", "evidence": [ { "database": "UniProtKB", "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561" } ], "pmid": "" }, { "name": "tubulin binding", "id": "GO:0015631", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015631", "evidence": [ { "database": "UniProtKB", "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "calcium-mediated signaling", "id": "GO:0019722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019722", "evidence": [ { "database": "UniProtKB", "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561" } ], "pmid": "" }, { "name": "regulation of signal transduction", "id": "GO:0009966", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009966", "evidence": [ { "database": "UniProtKB", "id": "F2Z561", "url": "https://www.uniprot.org/uniprotkb/F2Z561" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z561", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z561" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 95, "start_aa": "Asp", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z584-1", "uniprot_ac": "F2Z584", "uniprot_id": "F2Z584_PIG", "mass": { "chemical_mass": 13936.0, "monoisotopic_mass": 13936.0 }, "refseq": { "ac": "NP_001230585", "name": "histone H2B type 1-D", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230585" }, "gene_names": [ { "name": "H2BC5", "type": "recommended", "evidence": [ { "id": "F2Z584", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ] }, { "name": "H2BC5", "type": "synonym", "evidence": [ { "id": "NP_001230585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230585" } ] }, { "name": "HIST1H2BD", "type": "synonym", "evidence": [ { "id": "NP_001230585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230585" } ] } ], "protein_names": [ { "name": "Histone H2B", "type": "recommended", "evidence": [ { "id": "F2Z584", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z584/entry#names_and_taxonomy" } ] }, { "name": "histone H2B type 1-D", "type": "synonym", "evidence": [ { "id": "NP_001230585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230585" } ] }, { "name": "histone cluster 1, H2bd", "type": "synonym", "evidence": [ { "id": "NP_001230585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230585" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "H2BC5", "url": "https://www.uniprot.org/uniprotkb/F2Z584", "locus": { "chromosome": "7", "start_pos": 20829493, "end_pos": 20821091, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021411", "url": "https://www.ensembl.org/id/ENSSSCG00000021411" } ] } } ], "crossref": [ { "id": "ENSSSCG00000021411", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021411", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22910", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22910", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100157327", "url": "https://www.ncbi.nlm.nih.gov/gene/100157327", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000558", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000558", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156127", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156127", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ssc:100157327", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157327", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FCPFAIR", "url": "https://omabrowser.org/oma/group/FCPFAIR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z584", "url": "https://www.orthodb.org/?gene=F2Z584", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23428", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23428", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00125", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00125", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110330", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110330", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-110331", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110331", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-171306", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171306", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-201722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-212300", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212300", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2299718", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2299718", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559580", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559582", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559582", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559586", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559586", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3214847", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-427359", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-427359", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5250924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5578749", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578749", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625886", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625886", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693565", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693565", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693571", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693571", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5693607", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-606279", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68616", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68616", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69473", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73728", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73728", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73772", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8866654", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8936459", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8936459", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9018519", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9670095", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9670095", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9764725", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9841922", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9841922", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843940", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843970", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843970", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9909649", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909649", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9940951", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9943411", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9943962", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943962", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9970672", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9970672", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001230585", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001230585", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z584-1", "url": "https://www.uniprot.org/uniprotkb/F2Z584-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 126, "header": "tr|F2Z584-1|F2Z584_PIG Isoform 1 of Histone H2B OS=Sus scrofa OX=9823 GN=H2BC5 PE=3 SV=1 CANONICAL=F2Z584-1" }, "isoforms": [ { "isoform_ac": "F2Z584-1", "url": "https://www.uniprot.org/uniprotkb/F2Z584/entry#F2Z584-1", "sequence": { "sequence": "MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 126, "header": "tr|F2Z584-1|F2Z584_PIG Isoform 1 of Histone H2B OS=Sus scrofa OX=9823 GN=H2BC5 PE=3 SV=1 CANONICAL=F2Z584-1" }, "locus": { "chromosome": "7", "start_pos": 20829493, "end_pos": 20829143, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025147.3", "url": "https://www.ensembl.org/id/ENSSSCT00000025147.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000022927.1", "url": "https://www.ensembl.org/id/ENSSSCP00000022927.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156127", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156127", "resource": "KEGG Pathway" }, { "id": "ssc:100157327", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157327", "resource": "KEGG Pathway" }, { "id": "R-SSC-110330", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110330", "resource": "Reactome", "description": "Recognition and association of DNA glycosylase with site containing an affected purine" }, { "id": "R-SSC-110331", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110331", "resource": "Reactome", "description": "Cleavage of the damaged purine" }, { "id": "R-SSC-171306", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171306", "resource": "Reactome", "description": "Packaging Of Telomere Ends" }, { "id": "R-SSC-201722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "resource": "Reactome", "description": "Formation of the beta-catenin:TCF transactivating complex" }, { "id": "R-SSC-212300", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212300", "resource": "Reactome", "description": "PRC2 methylates histones and DNA" }, { "id": "R-SSC-2299718", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2299718", "resource": "Reactome", "description": "Condensation of Prophase Chromosomes" }, { "id": "R-SSC-2559580", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "resource": "Reactome", "description": "Oxidative Stress Induced Senescence" }, { "id": "R-SSC-2559582", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559582", "resource": "Reactome", "description": "Senescence-Associated Secretory Phenotype (SASP)" }, { "id": "R-SSC-2559586", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559586", "resource": "Reactome", "description": "DNA Damage/Telomere Stress Induced Senescence" }, { "id": "R-SSC-3214847", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214847", "resource": "Reactome", "description": "HATs acetylate histones" }, { "id": "R-SSC-427359", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-427359", "resource": "Reactome", "description": "SIRT1 negatively regulates rRNA expression" }, { "id": "R-SSC-5250924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "resource": "Reactome", "description": "B-WICH complex positively regulates rRNA expression" }, { "id": "R-SSC-5578749", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578749", "resource": "Reactome", "description": "Transcriptional regulation by small RNAs" }, { "id": "R-SSC-5625886", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625886", "resource": "Reactome", "description": "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3" }, { "id": "R-SSC-5693565", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693565", "resource": "Reactome", "description": "Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks" }, { "id": "R-SSC-5693571", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693571", "resource": "Reactome", "description": "Nonhomologous End-Joining (NHEJ)" }, { "id": "R-SSC-5693607", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5693607", "resource": "Reactome", "description": "Processing of DNA double-strand break ends" }, { "id": "R-SSC-606279", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "resource": "Reactome", "description": "Deposition of new CENPA-containing nucleosomes at the centromere" }, { "id": "R-SSC-68616", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68616", "resource": "Reactome", "description": "Assembly of the ORC complex at the origin of replication" }, { "id": "R-SSC-69473", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69473", "resource": "Reactome", "description": "G2/M DNA damage checkpoint" }, { "id": "R-SSC-73728", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73728", "resource": "Reactome", "description": "RNA Polymerase I Promoter Opening" }, { "id": "R-SSC-73772", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "resource": "Reactome", "description": "RNA Polymerase I Promoter Escape" }, { "id": "R-SSC-8866654", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8866654", "resource": "Reactome", "description": "E3 ubiquitin ligases ubiquitinate target proteins" }, { "id": "R-SSC-8936459", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8936459", "resource": "Reactome", "description": "RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function" }, { "id": "R-SSC-9018519", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "resource": "Reactome", "description": "Estrogen-dependent gene expression" }, { "id": "R-SSC-9670095", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9670095", "resource": "Reactome", "description": "Inhibition of DNA recombination at telomere" }, { "id": "R-SSC-9764725", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "resource": "Reactome", "description": "Negative Regulation of CDH1 Gene Transcription" }, { "id": "R-SSC-9841922", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9841922", "resource": "Reactome", "description": "MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis" }, { "id": "R-SSC-9843940", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "resource": "Reactome", "description": "Regulation of endogenous retroelements by KRAB-ZFP proteins" }, { "id": "R-SSC-9843970", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843970", "resource": "Reactome", "description": "Regulation of endogenous retroelements by the Human Silencing Hub (HUSH) complex" }, { "id": "R-SSC-9909649", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909649", "resource": "Reactome", "description": "Regulation of PD-L1(CD274) transcription" }, { "id": "R-SSC-9940951", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "resource": "Reactome", "description": "Interaction of NuRD complexes with transcription factors" }, { "id": "R-SSC-9943411", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "resource": "Reactome", "description": "CHD1 and CHD2 subfamily" }, { "id": "R-SSC-9943962", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943962", "resource": "Reactome", "description": "CHD6, CHD7, CHD8, CHD9 subfamily" }, { "id": "R-SSC-9970672", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9970672", "resource": "Reactome", "description": "FXIIa activates plasma kallikrein-kinin system" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HDT7-1", "protein_name": "Histone H2B", "gene_name": "LOC100773886", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 126 }, "evidence": [ { "id": "F2Z584", "url": "https://omabrowser.org/oma/group/F2Z584/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P02293-1", "protein_name": "Histone H2B.1", "gene_name": "HTB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSAKAEKKPASKAPAEKKPAAKKTSTSTDGKKRSKARKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQA", "length": 131 }, "evidence": [ { "id": "F2Z584", "url": "https://omabrowser.org/oma/group/F2Z584/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0C1H3-1", "protein_name": "Histone H2B 1/2/3/4/6", "gene_name": "H2B-II", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 126 }, "evidence": [ { "id": "F2Z584", "url": "https://omabrowser.org/oma/group/F2Z584/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P62808-1", "protein_name": "Histone H2B type 1", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 126 }, "evidence": [ { "id": "F2Z584", "url": "https://omabrowser.org/oma/group/F2Z584/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F2Z584", "url": "https://omabrowser.org/oma/group/F2Z584/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6PC60-1", "protein_name": "Histone H2B 3", "gene_name": "hist2h2l", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 126 }, "evidence": [ { "id": "F2Z584", "url": "https://omabrowser.org/oma/group/F2Z584/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q6ZWY9-1", "protein_name": "Histone H2B type 1-C/E/G", "gene_name": "H2bc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 126 }, "evidence": [ { "id": "F2Z584", "url": "https://omabrowser.org/oma/group/F2Z584/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" }, { "name": "structural constituent of chromatin", "id": "GO:0030527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030527", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" }, { "name": "nucleosome", "id": "GO:0000786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000786", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "antibacterial humoral response", "id": "GO:0019731", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019731", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" }, { "name": "antimicrobial humoral immune response mediated by antimicrobial peptide", "id": "GO:0061844", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061844", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" }, { "name": "chromatin organization", "id": "GO:0006325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006325", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" }, { "name": "innate immune response in mucosa", "id": "GO:0002227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002227", "evidence": [ { "database": "UniProtKB", "id": "F2Z584", "url": "https://www.uniprot.org/uniprotkb/F2Z584" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z584", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z584" }, { "id": "PF00125", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00125" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Core Histone H2A/H2B/H3", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 101, "start_aa": "Thr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z593-1", "uniprot_ac": "F2Z593", "uniprot_id": "F2Z593_PIG", "mass": { "chemical_mass": 42069.0, "monoisotopic_mass": 42069.0 }, "refseq": {}, "gene_names": [ { "name": "MAB21L1", "type": "recommended", "evidence": [ { "id": "F2Z593", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z593" } ] } ], "protein_names": [ { "name": "Putative nucleotidyltransferase MAB21L1", "type": "recommended", "evidence": [ { "id": "F2Z593", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z593/entry#names_and_taxonomy" } ] }, { "name": "Protein mab-21-like 1", "type": "synonym", "evidence": [ { "id": "F2Z593", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z593/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z593", "url": "https://www.uniprot.org/uniprotkb/F2Z593" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAB21L1", "url": "https://www.uniprot.org/uniprotkb/F2Z593", "locus": { "chromosome": "11", "start_pos": 11519734, "end_pos": 11521136, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000009351", "url": "https://www.ensembl.org/id/ENSSSCG00000009351" } ] } } ], "crossref": [ { "id": "F2Z593", "url": "https://alphafold.ebi.ac.uk/entry/F2Z593", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009351", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009351", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR024810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10656", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10656", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10656:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10656:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03281", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03281", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F2Z593", "url": "https://www.uniprot.org/uniprotkb/F2Z593", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z593-1", "url": "https://www.uniprot.org/uniprotkb/F2Z593-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIAAQAKLVYHLNKYYNEKCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLNEMDNRYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMVADTSEVKLRIRDRYVVQITPAFKCTGIWPRSAAHWPLPHIPWPGPNRVAEVKAEGFNLLSKECHSLAGKQSSAESDAWVLQFAEAENRLQMGGCRKKCLSILKTLRDRHLELPGQPLNNYHMKTLVSYECEKHPRESDWDESCLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALENAAKQTWRLAREILTNPKYTVTPGKQPGSNARPQ", "length": 370, "header": "tr|F2Z593-1|F2Z593_PIG Isoform 1 of Putative nucleotidyltransferase MAB21L1 OS=Sus scrofa OX=9823 GN=MAB21L1 PE=3 SV=3 CANONICAL=F2Z593-1" }, "isoforms": [ { "isoform_ac": "F2Z593-1", "url": "https://www.uniprot.org/uniprotkb/F2Z593/entry#F2Z593-1", "sequence": { "sequence": "MIAAQAKLVYHLNKYYNEKCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLNEMDNRYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMVADTSEVKLRIRDRYVVQITPAFKCTGIWPRSAAHWPLPHIPWPGPNRVAEVKAEGFNLLSKECHSLAGKQSSAESDAWVLQFAEAENRLQMGGCRKKCLSILKTLRDRHLELPGQPLNNYHMKTLVSYECEKHPRESDWDESCLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALENAAKQTWRLAREILTNPKYTVTPGKQPGSNARPQ", "length": 370, "header": "tr|F2Z593-1|F2Z593_PIG Isoform 1 of Putative nucleotidyltransferase MAB21L1 OS=Sus scrofa OX=9823 GN=MAB21L1 PE=3 SV=3 CANONICAL=F2Z593-1" }, "locus": { "chromosome": "11", "start_pos": 11521136, "end_pos": 11519737, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000010248.3", "url": "https://www.ensembl.org/id/ENSSSCT00000010248.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009981.3", "url": "https://www.ensembl.org/id/ENSSSCP00000009981.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 358, "start_aa": "Thr", "end_pos": 358, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr358", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z593", "url": "https://www.uniprot.org/uniprotkb/F2Z593" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z593", "url": "https://www.uniprot.org/uniprotkb/F2Z593" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F2Z593", "url": "https://www.uniprot.org/uniprotkb/F2Z593" } ], "pmid": "" }, { "name": "nucleotide binding", "id": "GO:0000166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000166", "evidence": [ { "database": "UniProtKB", "id": "F2Z593", "url": "https://www.uniprot.org/uniprotkb/F2Z593" } ], "pmid": "" }, { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "F2Z593", "url": "https://www.uniprot.org/uniprotkb/F2Z593" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "eye development", "id": "GO:0001654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001654", "evidence": [ { "database": "UniProtKB", "id": "F2Z593", "url": "https://www.uniprot.org/uniprotkb/F2Z593" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z593-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 370, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z593-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z593" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z593", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z593" }, { "id": "PF20266", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20266" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mab-21-like HhH/H2TH-like", "eco_id": "ECO_0000259", "start_pos": 246, "end_pos": 343, "start_aa": "Cys", "end_aa": "Trp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z593", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z593" }, { "id": "PF03281", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03281" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mab-21-like nucleotidyltransferase", "eco_id": "ECO_0000259", "start_pos": 62, "end_pos": 241, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 358 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5B3-1", "uniprot_ac": "F2Z5B3", "uniprot_id": "F2Z5B3_PIG", "mass": { "chemical_mass": 19998.0, "monoisotopic_mass": 19998.0 }, "refseq": { "ac": "XP_001925171", "name": "transmembrane protein 47", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925171" }, "gene_names": [ { "name": "TMEM47", "type": "recommended", "evidence": [ { "id": "F2Z5B3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3" } ] }, { "name": "TMEM47", "type": "synonym", "evidence": [ { "id": "XP_001925171", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925171" } ] } ], "protein_names": [ { "name": "Transmembrane protein 47", "type": "recommended", "evidence": [ { "id": "F2Z5B3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3/entry#names_and_taxonomy" } ] }, { "name": "Transmembrane 4 superfamily member 10", "type": "synonym", "evidence": [ { "id": "F2Z5B3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 47", "type": "synonym", "evidence": [ { "id": "XP_001925171", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925171" } ] } ], "function": [ { "annotation": "Regulates cell junction organization in epithelial cells. May play a role in the transition from adherens junction to tight junction assembly. May regulate F-actin polymerization required for tight junctional localization dynamics and affect the junctional localization of PARD6B. During podocyte differentiation may negatively regulate activity of FYN and subsequently the abundance of nephrin.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B3", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3#function" }, { "database": "UniProtKB", "id": "ARBA00055467", "url": "https://www.uniprot.org/uniprotkb/ARBA00055467#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5B3", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TMEM47", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3", "locus": { "chromosome": "X", "start_pos": 30584046, "end_pos": 30615232, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024132", "url": "https://www.ensembl.org/id/ENSSSCG00000024132" } ] } } ], "crossref": [ { "id": "F2Z5B3", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5B3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024132", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024132", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100157181", "url": "https://www.ncbi.nlm.nih.gov/gene/100157181", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015664", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015664", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100157181", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157181", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FVETATM", "url": "https://omabrowser.org/oma/group/FVETATM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5B3", "url": "https://www.orthodb.org/?gene=F2Z5B3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14399:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14399:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_001925171", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925171", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5B3", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5B3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY", "length": 181, "header": "tr|F2Z5B3-1|F2Z5B3_PIG Isoform 1 of Transmembrane protein 47 OS=Sus scrofa OX=9823 GN=TMEM47 PE=3 SV=1 CANONICAL=F2Z5B3-1" }, "isoforms": [ { "isoform_ac": "F2Z5B3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3/entry#F2Z5B3-1", "sequence": { "sequence": "MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY", "length": 181, "header": "tr|F2Z5B3-1|F2Z5B3_PIG Isoform 1 of Transmembrane protein 47 OS=Sus scrofa OX=9823 GN=TMEM47 PE=3 SV=1 CANONICAL=F2Z5B3-1" }, "locus": { "chromosome": "X", "start_pos": 30614573, "end_pos": 30587231, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023522.5", "url": "https://www.ensembl.org/id/ENSSSCT00000023522.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000024570.1", "url": "https://www.ensembl.org/id/ENSSSCP00000024570.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B3", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100157181", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100157181", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0B4LHK8-1", "protein_name": "Transmembrane protein 47", "gene_name": "CG6982", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MHQQYQQQQQQQQQGNLVGYNNKMNVLPNYTLSGMSSFDAESLPDYSEFDSESVTLDYYKESVLRPPAEKMAPTTTIETITITRPLKVIAFICGVIVVALMIMALASTDWLMASDWRQGLFVHCIEDDSVPPLPFNIQDPPGCYWTRDVGYIKATAALCIITLITDVIATVLTGLGLRTQNHNLKYKFYRIAVLVMLVSLLAVLSALIVYPVCFAGELTMANRRVWEFGWAYGVGWGAAIFLFGAVVLLLCDKESEEIYYKERKIVHENQMRA", "length": 273 }, "evidence": [ { "id": "F2Z5B3", "url": "https://omabrowser.org/oma/group/F2Z5B3/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "D3ZBB3-1", "protein_name": "Transmembrane protein 47", "gene_name": "Tmem47", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPANLDSWHCESTLGSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY", "length": 181 }, "evidence": [ { "id": "F2Z5B3", "url": "https://omabrowser.org/oma/group/F2Z5B3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q1JPA3-1", "protein_name": "Transmembrane protein 47", "gene_name": "TMEM47", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY", "length": 181 }, "evidence": [ { "id": "F2Z5B3", "url": "https://omabrowser.org/oma/group/F2Z5B3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q6PFT6-1", "protein_name": "Transmembrane protein 47", "gene_name": "tmem47", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MASSVSGAEEVRVSALTPLKLVGLVCVFLALCLDVGAVLSPAWVTADDQYHLSLWKSCSKPAASATWRCNSTLGTDWQIATLALLLGGAFLILLSFLVALVSVCIRSRRRFYRPVAIMLFAAVVLQACCLVLYPIKFIETISLRIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY", "length": 181 }, "evidence": [ { "id": "F2Z5B3", "url": "https://omabrowser.org/oma/group/F2Z5B3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9BQJ4-1", "protein_name": "Transmembrane protein 47", "gene_name": "TMEM47", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPASLDIWHCESTLSSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY", "length": 181 }, "evidence": [ { "id": "F2Z5B3", "url": "https://omabrowser.org/oma/group/F2Z5B3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9JJG6-1", "protein_name": "Transmembrane protein 47", "gene_name": "Tmem47", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASAGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPANLDIWHCESTLGSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY", "length": 181 }, "evidence": [ { "id": "F2Z5B3", "url": "https://omabrowser.org/oma/group/F2Z5B3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "R4GIT0-1", "protein_name": "Transmembrane protein 47", "gene_name": "TMEM47", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASSGSGMEEVRVSVLTPLKLVGLVCIFLALCLDLGAVLSPAWVTADHQYYLSLWESCRKPGNLESWLCESTLHSDWQIATLALLLGGAAIILIAFLVGLISICVGSRRRFYRPVAVMLFAAVVLQVCSLVLYPIKFIETVSLKIYHEFNWGYGLAWGATIFSFGGAILYCLNPKNYEDYY", "length": 181 }, "evidence": [ { "id": "F2Z5B3", "url": "https://omabrowser.org/oma/group/F2Z5B3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B3", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3" } ], "pmid": "" }, { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B3", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3" } ], "pmid": "" }, { "name": "adherens junction", "id": "GO:0005912", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005912", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B3", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "F2Z5B3", "url": "https://www.uniprot.org/uniprotkb/F2Z5B3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5B3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 181, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5B3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5B3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5C6-1", "uniprot_ac": "F2Z5C6", "uniprot_id": "F2Z5C6_PIG", "mass": { "chemical_mass": 40907.0, "monoisotopic_mass": 40907.0 }, "refseq": { "ac": "XP_020956311", "name": "protein mab-21-like 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956311" }, "gene_names": [ { "name": "MAB21L2", "type": "recommended", "evidence": [ { "id": "F2Z5C6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6" } ] }, { "name": "MAB21L2", "type": "synonym", "evidence": [ { "id": "XP_020956311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956311" } ] } ], "protein_names": [ { "name": "Mab-21 like 2", "type": "synonym", "evidence": [ { "id": "F2Z5C6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6/entry#names_and_taxonomy" } ] }, { "name": "protein mab-21-like 2", "type": "synonym", "evidence": [ { "id": "XP_020956311", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956311" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5C6", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MAB21L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6", "locus": { "chromosome": "8", "start_pos": 78385764, "end_pos": 78386843, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000052676", "url": "https://www.ensembl.org/id/ENSSSCG00000052676" } ] } } ], "crossref": [ { "id": "ENSSSCG00000009022", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009022", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100519500", "url": "https://www.ncbi.nlm.nih.gov/gene/100519500", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR024810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519500", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519500", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WDESCIA", "url": "https://omabrowser.org/oma/group/WDESCIA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5C6", "url": "https://www.orthodb.org/?gene=F2Z5C6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10656", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10656", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10656:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10656:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03281", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03281", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020956311", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020956311", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5C6", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5C6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIAAQAKLVYQLNKYYTERCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLSEIDARYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMIADTSEVKLRIRERYVVQITPAFKCTGIWPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSLTGKQSSAESDAWVLQFGEAENRLLMGGCRNKCLSVLKTLRDRHLELPGQPLNNYHMKTLLLYECEKHPRETDWDEACLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALESAAKQTWRLAREILTNPKSLDKL", "length": 359, "header": "tr|F2Z5C6-1|F2Z5C6_PIG Isoform 1 of Mab-21 like 2 OS=Sus scrofa OX=9823 GN=MAB21L2 PE=3 SV=1 CANONICAL=F2Z5C6-1" }, "isoforms": [ { "isoform_ac": "F2Z5C6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6/entry#F2Z5C6-1", "sequence": { "sequence": "MIAAQAKLVYQLNKYYTERCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLSEIDARYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMIADTSEVKLRIRERYVVQITPAFKCTGIWPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSLTGKQSSAESDAWVLQFGEAENRLLMGGCRNKCLSVLKTLRDRHLELPGQPLNNYHMKTLLLYECEKHPRETDWDEACLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALESAAKQTWRLAREILTNPKSLDKL", "length": 359, "header": "tr|F2Z5C6-1|F2Z5C6_PIG Isoform 1 of Mab-21 like 2 OS=Sus scrofa OX=9823 GN=MAB21L2 PE=3 SV=1 CANONICAL=F2Z5C6-1" }, "locus": { "chromosome": "8", "start_pos": 78386843, "end_pos": 78385767, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000104833.1", "url": "https://www.ensembl.org/id/ENSSSCT00000104833.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000078712.1", "url": "https://www.ensembl.org/id/ENSSSCP00000078712.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C6", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519500", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519500", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0XZD8-1", "protein_name": "Mab-21 like 2", "gene_name": "MAB21L2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MIAAQAKLVYQLNKYYTERCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLSEIDARYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMIADTSEVKLRIRERYVVQITPAFKCTGIWPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSLTGKQSSAESDAWVLQFGEAENRLLMGGCRNKCLSVLKTLRDRHLELPGQPLNNYHMKTLLLYECEKHPRETDWDEACLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALESAAKQTWRLAREILTNPKSLDKL", "length": 359 }, "evidence": [ { "id": "F2Z5C6", "url": "https://omabrowser.org/oma/group/F2Z5C6/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4ACZ1-1", "protein_name": "Mab-21 like 2", "gene_name": "Mab21l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIAAQAKLVYQLNKYYTERCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLSEIDARYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMIADTSEVKLRIRERYVVQITPAFKCTGIWPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSLTGKQSSAESDAWVLQFGEAENRLLMGGCRNKCLSVLKTLRDRHLELPGQPLNNYHMKTLLLYECEKHPRETDWDEACLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALESAAKQTWRLAREILTNPKSLDKL", "length": 359 }, "evidence": [ { "id": "F2Z5C6", "url": "https://omabrowser.org/oma/group/F2Z5C6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3MXA1-1", "protein_name": "Mab-21 like 2", "gene_name": "MAB21L2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MIAAQAKLVYQLNKYYTERCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLSEIDARYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMIADTSEVKLRIRERYVVQITPAFKCTGIWPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSLTGKQSSAESDAWVLQFGEAENRLLMGGCRNKCLSVLKTLRDRHLELPGQPLNNYHMKTLLLYECEKHPRETDWDEACLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALESAAKQTWRLAREILTNPKSLDKL", "length": 359 }, "evidence": [ { "id": "F2Z5C6", "url": "https://omabrowser.org/oma/group/F2Z5C6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8BPP1-1", "protein_name": "Protein mab-21-like 2", "gene_name": "Mab21l2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIAAQAKLVYQLNKYYTERCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLSEIDARYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMIADTSEVKLRIRERYVVQITPAFKCTGIWPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSLTGKQSSAESDAWVLQFGEAENRLLMGGCRNKCLSVLKTLRDRHLELPGQPLNNYHMKTLLLYECEKHPRETDWDEACLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALESAAKQTWRLAREILTNPKSLDKL", "length": 359 }, "evidence": [ { "id": "F2Z5C6", "url": "https://omabrowser.org/oma/group/F2Z5C6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8UUZ1-1", "protein_name": "Protein mab-21-like 2", "gene_name": "mab21l2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MIATQAKLVYQLNKYYNERCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLSEIDARYEGMEVIAPNEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMVADTSEVKLRIRERYVVQITPAFKCTGIWPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSLTGKQSSAESDAWVLQFAEAENRLLMSGCRKKCLSVLKTLRDRHLELPGQPLNNYHMKTLLLYECEKHPRETDWDESCLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALETAAKQTWRLAREILTNAKSLDKL", "length": 359 }, "evidence": [ { "id": "F2Z5C6", "url": "https://omabrowser.org/oma/group/F2Z5C6/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9Y106-1", "protein_name": "Protein mab-21-like", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MLVPPDMMAAQTRMVYQMNRFCTERVQARMYKTATAIREICKIVQDILKEVELQEPRFISSLVECNGRFEGVEVISPNEFEIVLYLNQMGVFNFVDDGTLPGCAVLKLSDGRKRSMSLWVEFITASGYLSSRKIRARFQTLVAQACDKSVYRDMVKMVGDTSEVKLRIRERFVVQITPAFKCSGIWPRSAAHWPVPHLPWPHPNIVAEVKTEGFDLLSKESVIMQNKNNNAASMEGDAWVLSFFEAENRLLQGGCRRRCLSMLKTLRDRHLDLPGNPISAYHLKNLLLYECEKHPRDFEWDEGCIADRINGIFLQLISCLQYRRCPHYFLPALDMFKGKSPSALEQAAKQVWRLTRELLTNANAFEKL", "length": 368 }, "evidence": [ { "id": "F2Z5C6", "url": "https://omabrowser.org/oma/group/F2Z5C6/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y586-1", "protein_name": "Protein mab-21-like 2", "gene_name": "MAB21L2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MIAAQAKLVYQLNKYYTERCQARKAAIAKTIREVCKVVSDVLKEVEVQEPRFISSLSEIDARYEGLEVISPTEFEVVLYLNQMGVFNFVDDGSLPGCAVLKLSDGRKRSMSLWVEFITASGYLSARKIRSRFQTLVAQAVDKCSYRDVVKMIADTSEVKLRIRERYVVQITPAFKCTGIWPRSAAQWPMPHIPWPGPNRVAEVKAEGFNLLSKECYSLTGKQSSAESDAWVLQFGEAENRLLMGGCRNKCLSVLKTLRDRHLELPGQPLNNYHMKTLLLYECEKHPRETDWDESCLGDRLNGILLQLISCLQCRRCPHYFLPNLDLFQGKPHSALESAAKQTWRLAREILTNPKSLDKL", "length": 359 }, "evidence": [ { "id": "F2Z5C6", "url": "https://omabrowser.org/oma/group/F2Z5C6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C6", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C6", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "eye development", "id": "GO:0001654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5C6", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5C6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6" }, { "id": "PF20266", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20266" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mab-21-like HhH/H2TH-like", "eco_id": "ECO_0000259", "start_pos": 246, "end_pos": 343, "start_aa": "Cys", "end_aa": "Trp", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z5C6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5C6" }, { "id": "PF03281", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03281" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mab-21-like nucleotidyltransferase", "eco_id": "ECO_0000259", "start_pos": 62, "end_pos": 243, "start_aa": "Arg", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5D5-1", "uniprot_ac": "F2Z5D5", "uniprot_id": "F2Z5D5_PIG", "mass": { "chemical_mass": 26687.0, "monoisotopic_mass": 26687.0 }, "refseq": { "ac": "XP_003130781", "name": "complement C1q-like protein 3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130781" }, "gene_names": [ { "name": "C1QL3", "type": "recommended", "evidence": [ { "id": "F2Z5D5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ] }, { "name": "C1QL3", "type": "synonym", "evidence": [ { "id": "XP_003130781", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130781" } ] } ], "protein_names": [ { "name": "Complement C1q like 3", "type": "synonym", "evidence": [ { "id": "F2Z5D5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5/entry#names_and_taxonomy" } ] }, { "name": "complement C1q-like protein 3", "type": "synonym", "evidence": [ { "id": "XP_003130781", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130781" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "C1QL3", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5", "locus": { "chromosome": "10", "start_pos": 45368803, "end_pos": 45359461, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011043", "url": "https://www.ensembl.org/id/ENSSSCG00000011043" } ] } } ], "crossref": [ { "id": "ENSSSCG00000011043", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011043", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100524890", "url": "https://www.ncbi.nlm.nih.gov/gene/100524890", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008983", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008983", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050822", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050822", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100524890", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524890", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GYEMLKF", "url": "https://omabrowser.org/oma/group/GYEMLKF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5D5", "url": "https://www.orthodb.org/?gene=F2Z5D5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22923", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22923", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22923:SF96", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22923:SF96", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00386", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00386", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003130781", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003130781", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5D5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLLLVILIPVLVSSAGTSAHYEMLGTCRMVCDPYGGTKAPSTAATPDRGLMQSLPTFIQGPKGEAGRPGKAGPRGPPGEPGPPGPVGPPGEKGEPGRQGLPGPPGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHEGYEVLKFDDVVTNLGNHYDPTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGFIIYAD", "length": 255, "header": "tr|F2Z5D5-1|F2Z5D5_PIG Isoform 1 of Complement C1q like 3 OS=Sus scrofa OX=9823 GN=C1QL3 PE=4 SV=1 CANONICAL=F2Z5D5-1" }, "isoforms": [ { "isoform_ac": "F2Z5D5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5/entry#F2Z5D5-1", "sequence": { "sequence": "MVLLLVILIPVLVSSAGTSAHYEMLGTCRMVCDPYGGTKAPSTAATPDRGLMQSLPTFIQGPKGEAGRPGKAGPRGPPGEPGPPGPVGPPGEKGEPGRQGLPGPPGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHEGYEVLKFDDVVTNLGNHYDPTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGFIIYAD", "length": 255, "header": "tr|F2Z5D5-1|F2Z5D5_PIG Isoform 1 of Complement C1q like 3 OS=Sus scrofa OX=9823 GN=C1QL3 PE=4 SV=1 CANONICAL=F2Z5D5-1" }, "locus": { "chromosome": "10", "start_pos": 45366288, "end_pos": 45359660, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012087.4", "url": "https://www.ensembl.org/id/ENSSSCT00000012087.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000011779.1", "url": "https://www.ensembl.org/id/ENSSSCP00000011779.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100524890", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100524890", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A1D5PK05-1", "protein_name": "Complement C1q like 3", "gene_name": "C1QL3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLLLVVLIPVLVSSAGTSAHYEMLGTCRMVCDPYGGTKAPSTAATPDRGLMQSLPTFIQGPKGDAGRPGKAGPRGPPGEPGPPGPVGPPGEKGEPGRQGLPGPPGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHEGYEVLKFDDVVTNLGNHYDPTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGFIIYAD", "length": 255 }, "evidence": [ { "id": "F2Z5D5", "url": "https://omabrowser.org/oma/group/F2Z5D5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4A3T5-1", "protein_name": "Complement C1q like 3", "gene_name": "C1ql3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVLLLVILIPVLVSSAGTSAHYEMLGTCRMVCDPYGGTKAPSTAATPDRGLMQSLPTFIQGPKGEAGRPGKAGPRGPPGEPGPPGPVGPPGEKGEPGRQGLPGPPGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHEGYEVLKFDDVVTNLGNHYDPTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGFIIYAD", "length": 255 }, "evidence": [ { "id": "F2Z5D5", "url": "https://omabrowser.org/oma/group/F2Z5D5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BM30-1", "protein_name": "Complement C1q like 3", "gene_name": "C1QL3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVLLLVILIPVLVSSAGTSAHYEMLGTCRMVCDPYGGTKAPSTAATPDRGLMQSLPTFIQGPKGEAGRPGKAGPRGPPGEPGPPGPVGPPGEKGEPGRQGLPGPPGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHEGYEVLKFDDVVTNLGNHYDPTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGFIIYAD", "length": 255 }, "evidence": [ { "id": "F2Z5D5", "url": "https://omabrowser.org/oma/group/F2Z5D5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5VWW1-1", "protein_name": "Complement C1q-like protein 3", "gene_name": "C1QL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVLLLVILIPVLVSSAGTSAHYEMLGTCRMVCDPYGGTKAPSTAATPDRGLMQSLPTFIQGPKGEAGRPGKAGPRGPPGEPGPPGPMGPPGEKGEPGRQGLPGPPGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHEGYEVLKFDDVVTNLGNHYDPTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGFIIYAD", "length": 255 }, "evidence": [ { "id": "F2Z5D5", "url": "https://omabrowser.org/oma/group/F2Z5D5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ESN4-1", "protein_name": "Complement C1q-like protein 3", "gene_name": "C1ql3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLLLVILIPVLVSSAGTSAHYEMLGTCRMVCDPYGGTKAPSTAATPDRGLMQSLPTFIQGPKGEAGRPGKAGPRGPPGEPGPPGPVGPPGEKGEPGRQGLPGPPGAPGLNAAGAISAATYSTVPKIAFYAGLKRQHEGYEVLKFDDVVTNLGNHYDPTTGKFTCSIPGIYFFTYHVLMRGGDGTSMWADLCKNNQVRASAIAQDADQNYDYASNSVVLHLEPGDEVYIKLDGGKAHGGNNNKYSTFSGFIIYAD", "length": 255 }, "evidence": [ { "id": "F2Z5D5", "url": "https://omabrowser.org/oma/group/F2Z5D5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "postsynaptic density assembly", "id": "GO:0097107", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097107", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" }, { "name": "maintenance of synapse structure", "id": "GO:0099558", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099558", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" }, { "name": "trans-synaptic signaling, modulating synaptic transmission", "id": "GO:0099550", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099550", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" }, { "name": "neurotransmitter receptor localization to postsynaptic specialization membrane", "id": "GO:0099645", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099645", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" }, { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" }, { "name": "synapse", "id": "GO:0045202", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045202", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" }, { "name": "synaptic cleft", "id": "GO:0043083", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043083", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" }, { "name": "hippocampal mossy fiber to CA3 synapse", "id": "GO:0098686", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098686", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "F2Z5D5", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5D5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5D5" }, { "id": "PS50871", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50871" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C1q", "eco_id": "ECO_0000259", "start_pos": 122, "end_pos": 255, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5F1-1", "uniprot_ac": "F2Z5F1", "uniprot_id": "F2Z5F1_PIG", "mass": { "chemical_mass": 14585.0, "monoisotopic_mass": 14585.0 }, "refseq": { "ac": "XP_003125412", "name": "splicing factor 3B subunit 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125412" }, "gene_names": [ { "name": "SF3B6", "type": "recommended", "evidence": [ { "id": "F2Z5F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1" } ] }, { "name": "SF3B6", "type": "synonym", "evidence": [ { "id": "XP_003125412", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125412" } ] } ], "protein_names": [ { "name": "Splicing factor 3B subunit 6", "type": "recommended", "evidence": [ { "id": "F2Z5F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1/entry#names_and_taxonomy" } ] }, { "name": "Pre-mRNA branch site protein p14", "type": "synonym", "evidence": [ { "id": "F2Z5F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1/entry#names_and_taxonomy" } ] }, { "name": "SF3b 14 kDa subunit", "type": "synonym", "evidence": [ { "id": "F2Z5F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1/entry#names_and_taxonomy" } ] }, { "name": "splicing factor 3B subunit 6", "type": "synonym", "evidence": [ { "id": "XP_003125412", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125412" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5F1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SF3B6", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1", "locus": { "chromosome": "3", "start_pos": 114620563, "end_pos": 114605971, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008587", "url": "https://www.ensembl.org/id/ENSSSCG00000008587" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008587", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008587", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd12241", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12241", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100521960", "url": "https://www.ncbi.nlm.nih.gov/gene/100521960", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100521960", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521960", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HQPDKMV", "url": "https://omabrowser.org/oma/group/HQPDKMV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5F1", "url": "https://www.orthodb.org/?gene=F2Z5F1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003125412", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003125412", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5F1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5F1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK", "length": 125, "header": "tr|F2Z5F1-1|F2Z5F1_PIG Isoform 1 of Splicing factor 3B subunit 6 OS=Sus scrofa OX=9823 GN=SF3B6 PE=1 SV=1 CANONICAL=F2Z5F1-1" }, "isoforms": [ { "isoform_ac": "F2Z5F1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1/entry#F2Z5F1-1", "sequence": { "sequence": "MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK", "length": 125, "header": "tr|F2Z5F1-1|F2Z5F1_PIG Isoform 1 of Splicing factor 3B subunit 6 OS=Sus scrofa OX=9823 GN=SF3B6 PE=1 SV=1 CANONICAL=F2Z5F1-1" }, "locus": { "chromosome": "3", "start_pos": 114617943, "end_pos": 114606153, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009397.5", "url": "https://www.ensembl.org/id/ENSSSCT00000009397.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009157.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009157.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100521960", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100521960", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Y6V5-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK", "length": 125 }, "evidence": [ { "id": "F2Z5F1", "url": "https://omabrowser.org/oma/group/F2Z5F1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "M0R835-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "Sf3b6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RDMQQVKQAIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRVSAFQKMDTKKKEEQLKLLKEKYGINTDPPK", "length": 126 }, "evidence": [ { "id": "F2Z5F1", "url": "https://omabrowser.org/oma/group/F2Z5F1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P59708-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "Sf3b6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK", "length": 125 }, "evidence": [ { "id": "F2Z5F1", "url": "https://omabrowser.org/oma/group/F2Z5F1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54LY9-1", "protein_name": "RNA recognition motif-containing protein RRM", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTLKKVSKLPPEINRILYVKNLPFKISSEELYGIFSNYGAIRQIRLGNTTETMGTAFVVYEDIFDARNACEHLSGYNVNNRYLVVLYYQQQKQQKKMDHQAKKKELDLLKQKFGLE", "length": 117 }, "evidence": [ { "id": "F2Z5F1", "url": "https://omabrowser.org/oma/group/F2Z5F1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9FMP4-1", "protein_name": "Splicing factor 3B subunit 6-like protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MTTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVSTKDK", "length": 124 }, "evidence": [ { "id": "F2Z5F1", "url": "https://omabrowser.org/oma/group/F2Z5F1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VRV7-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "Sf3b6", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPEAP", "length": 121 }, "evidence": [ { "id": "F2Z5F1", "url": "https://omabrowser.org/oma/group/F2Z5F1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y3B4-1", "protein_name": "Splicing factor 3B subunit 6", "gene_name": "SF3B6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK", "length": 125 }, "evidence": [ { "id": "F2Z5F1", "url": "https://omabrowser.org/oma/group/F2Z5F1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1" } ], "pmid": "" }, { "name": "U12-type spliceosomal complex", "id": "GO:0005689", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005689", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1" } ], "pmid": "" }, { "name": "U2-type spliceosomal complex", "id": "GO:0005684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005684", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mRNA splicing, via spliceosome", "id": "GO:0000398", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000398", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5F1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F1" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 94, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5F5-1", "uniprot_ac": "F2Z5F5", "uniprot_id": "F2Z5F5_PIG", "mass": { "chemical_mass": 24205.0, "monoisotopic_mass": 24205.0 }, "refseq": { "ac": "XP_003128108", "name": "40S ribosomal protein S8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128108" }, "gene_names": [ { "name": "RPS8", "type": "recommended", "evidence": [ { "id": "F2Z5F5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5" } ] }, { "name": "RPS8", "type": "synonym", "evidence": [ { "id": "XP_003128108", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128108" } ] } ], "protein_names": [ { "name": "40S ribosomal protein S8", "type": "recommended", "evidence": [ { "id": "F2Z5F5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5/entry#names_and_taxonomy" } ] }, { "name": "40S ribosomal protein S8", "type": "synonym", "evidence": [ { "id": "XP_003128108", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128108" } ] } ], "function": [ { "annotation": "Component of the small ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F5", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5#function" }, { "database": "UniProtKB", "id": "ARBA00045441", "url": "https://www.uniprot.org/uniprotkb/ARBA00045441#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5F5", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPS8", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000003930", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003930", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11380", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11380", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100516861", "url": "https://www.ncbi.nlm.nih.gov/gene/100516861", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "3J7P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR001047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022309", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022309", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042563", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042563", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516861", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516861", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QRPHYRK", "url": "https://omabrowser.org/oma/group/QRPHYRK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5F5", "url": "https://www.orthodb.org/?gene=F2Z5F5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00003j7p", "url": "https://www.rcsb.org/structure/pdb_00003j7p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7P", "url": "https://www.rcsb.org/structure/3J7P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF01201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72649", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72649", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003128108", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003128108", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5F5", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5F5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK", "length": 208, "header": "tr|F2Z5F5-1|F2Z5F5_PIG Isoform 1 of 40S ribosomal protein S8 OS=Sus scrofa OX=9823 GN=RPS8 PE=1 SV=3 CANONICAL=F2Z5F5-1" }, "isoforms": [ { "isoform_ac": "F2Z5F5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5/entry#F2Z5F5-1", "sequence": { "sequence": "MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK", "length": 208, "header": "tr|F2Z5F5-1|F2Z5F5_PIG Isoform 1 of 40S ribosomal protein S8 OS=Sus scrofa OX=9823 GN=RPS8 PE=1 SV=3 CANONICAL=F2Z5F5-1" }, "locus": { "chromosome": "6", "start_pos": 166553207, "end_pos": 166550631, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004346.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004346.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000004246.3", "url": "https://www.ensembl.org/id/ENSSSCP00000004246.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structure of the mammalian ribosome-Sec61 complex to 3.4 A resolution.", "journal": "Cell", "date": "2014", "authors": "Voorhees Rebecca M, Fern\u00e1ndez Israel S, Scheres Sjors H W, Hegde Ramanujan S", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F5", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5" } ], "reference": [ { "type": "PubMed", "id": "24930395", "url": "https://glygen.org/publication/PubMed/24930395" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F5", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516861", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516861", "resource": "KEGG Pathway" }, { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-72649", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72649", "resource": "Reactome", "description": "Translation initiation complex formation" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72695", "resource": "Reactome", "description": "Formation of the ternary complex, and subsequently, the 43S complex" }, { "id": "R-SSC-72702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72702", "resource": "Reactome", "description": "Ribosomal scanning and start codon recognition" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [ { "uniprot_canonical_ac": "F1NB02-1", "protein_name": "40S ribosomal protein S8", "gene_name": "RPS8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "GISRDNWHKRRKTGGKRKPYHKKRKYELGRPPANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSTPYRQWYEAHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKIASILEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK", "length": 207 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "G3GYR9-1", "protein_name": "40S ribosomal protein S8", "gene_name": "Rps8", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK", "length": 208 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P0CX39-1", "protein_name": "Small ribosomal subunit protein eS8A", "gene_name": "RPS8A", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK", "length": 200 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P0CX40-1", "protein_name": "Small ribosomal subunit protein eS8B", "gene_name": "RPS8B", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGAKRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGKKKNVKEEETVAKSKNAERKWAARAASAKIESSVESQFSAGRLYACISSRPGQSGRCDGYILEGEELAFYLRRLTAKK", "length": 200 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P62241-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK", "length": 208 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P62242-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "Rps8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK", "length": 208 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P62243-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "Rps8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK", "length": 208 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62247-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "rps8", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGISRDNWHKRRRTGGKRKPVHKKRKYELGRPAANTKIGPRRIHTIRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVVLVDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKVQKKFTLRRKTAKISPLLEEQFLQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK", "length": 208 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q54E24-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "rps8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGISRDALHKHRLTGAARKCNYKKRKYELGRQAAKTKICSQGEEKRVRSIRVRGGHQKFRALRLDTGNFSWATEKITRKCRILNVVYNATSNDLVRTNTLVKGSIVQIDATPYKQWYETHYGVVVGKKKSAKKDGEAEQVVKKSASLLAKLASRAKGRVLDSAIESQIGEGRFFARITSRPGQVGKCDGYILEAKELEFYQRRLQKKKSAK", "length": 211 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5E958-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RPS8", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK", "length": 208 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8MLY8-1", "protein_name": "Small ribosomal subunit protein eS8", "gene_name": "RpS8", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIKSKK", "length": 208 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9FIF3-1", "protein_name": "Small ribosomal subunit protein eS8y", "gene_name": "RPS8B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA", "length": 210 }, "evidence": [ { "id": "F2Z5F5", "url": "https://omabrowser.org/oma/group/F2Z5F5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F5", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5" } ], "pmid": "" }, { "name": "maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)", "id": "GO:0000462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000462", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F5", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F5", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic small ribosomal subunit", "id": "GO:0022627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022627", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F5", "url": "https://www.uniprot.org/uniprotkb/F2Z5F5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 64, "end_pos": 66, "annotation": "n_glycosylation_sequon" }, { "start_pos": 84, "end_pos": 86, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 64, "end_pos": 66 }, { "start_pos": 84, "end_pos": 86 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5F7-1", "uniprot_ac": "F2Z5F7", "uniprot_id": "F2Z5F7_PIG", "mass": { "chemical_mass": 11250.0, "monoisotopic_mass": 11250.0 }, "refseq": { "ac": "NP_001231854", "name": "protein dpy-30 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231854" }, "gene_names": [ { "name": "DPY30", "type": "recommended", "evidence": [ { "id": "F2Z5F7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7" } ] }, { "name": "DPY30", "type": "synonym", "evidence": [ { "id": "NP_001231854", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231854" } ] } ], "protein_names": [ { "name": "Protein dpy-30 homolog", "type": "recommended", "evidence": [ { "id": "F2Z5F7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7/entry#names_and_taxonomy" } ] }, { "name": "Dpy-30-like protein", "type": "synonym", "evidence": [ { "id": "F2Z5F7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7/entry#names_and_taxonomy" } ] }, { "name": "dpy-30 homolog", "type": "synonym", "evidence": [ { "id": "NP_001231854", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231854" } ] }, { "name": "protein dpy-30 homolog", "type": "synonym", "evidence": [ { "id": "NP_001231854", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231854" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5F7", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DPY30", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7", "locus": { "chromosome": "3", "start_pos": 107533496, "end_pos": 107520642, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000008516", "url": "https://www.ensembl.org/id/ENSSSCG00000008516" } ] } } ], "crossref": [ { "id": "ENSSSCG00000008516", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000008516", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22965", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22965", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100514043", "url": "https://www.ncbi.nlm.nih.gov/gene/100514043", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037856", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037856", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049629", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049629", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100514043", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514043", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "INYLAAY", "url": "https://omabrowser.org/oma/group/INYLAAY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5F7", "url": "https://www.orthodb.org/?gene=F2Z5F7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23356", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23356", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23356:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23356:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05186", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05186", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001231854", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231854", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5F7", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5F7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPEQMLEGQTQVAENPHSEYGLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFEDRN", "length": 99, "header": "tr|F2Z5F7-1|F2Z5F7_PIG Isoform 1 of Protein dpy-30 homolog OS=Sus scrofa OX=9823 GN=DPY30 PE=1 SV=1 CANONICAL=F2Z5F7-1" }, "isoforms": [ { "isoform_ac": "F2Z5F7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7/entry#F2Z5F7-1", "sequence": { "sequence": "MEPEQMLEGQTQVAENPHSEYGLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFEDRN", "length": 99, "header": "tr|F2Z5F7-1|F2Z5F7_PIG Isoform 1 of Protein dpy-30 homolog OS=Sus scrofa OX=9823 GN=DPY30 PE=1 SV=1 CANONICAL=F2Z5F7-1" }, "locus": { "chromosome": "3", "start_pos": 107533236, "end_pos": 107520977, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000009320.4", "url": "https://www.ensembl.org/id/ENSSSCT00000009320.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000009082.2", "url": "https://www.ensembl.org/id/ENSSSCP00000009082.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F7", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100514043", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100514043", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "B8JMZ3-1", "protein_name": "Protein dpy-30 homolog", "gene_name": "dpy30", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADEHTDAGESMEGHTPVPENPHAEYGLTENIQRIAENEKTAEKVGKQKVDPQTLQTLPTRAYLDQTVVPILLQGLSVLAKERPPNPIEFLAAFLLKNKSQFEERN", "length": 106 }, "evidence": [ { "id": "F2Z5F7", "url": "https://omabrowser.org/oma/group/F2Z5F7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "G3HEW0-1", "protein_name": "Protein dpy-30 homolog", "gene_name": "Dpy30", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MESEQMLEGQTQVAENPHSEYGLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFEDRN", "length": 99 }, "evidence": [ { "id": "F2Z5F7", "url": "https://omabrowser.org/oma/group/F2Z5F7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "Q2NKU6-1", "protein_name": "Protein dpy-30 homolog", "gene_name": "DPY30", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEPEQMLEGQTQVAENPHSEYGLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFEDRN", "length": 99 }, "evidence": [ { "id": "F2Z5F7", "url": "https://omabrowser.org/oma/group/F2Z5F7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q99LT0-1", "protein_name": "Protein dpy-30 homolog", "gene_name": "Dpy30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESEQMLEGQTQVAENPHSEYGLTDSVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFEDRN", "length": 99 }, "evidence": [ { "id": "F2Z5F7", "url": "https://omabrowser.org/oma/group/F2Z5F7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C005-1", "protein_name": "Protein dpy-30 homolog", "gene_name": "DPY30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPEQMLEGQTQVAENPHSEYGLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFEDRN", "length": 99 }, "evidence": [ { "id": "F2Z5F7", "url": "https://omabrowser.org/oma/group/F2Z5F7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F7", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "endosomal transport", "id": "GO:0016197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016197", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F7", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7" } ], "pmid": "" }, { "name": "transcription initiation-coupled chromatin remodeling", "id": "GO:0045815", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045815", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F7", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F7", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7" } ], "pmid": "" }, { "name": "MLL3/4 complex", "id": "GO:0044666", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044666", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F7", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7" } ], "pmid": "" }, { "name": "Set1C/COMPASS complex", "id": "GO:0048188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048188", "evidence": [ { "database": "UniProtKB", "id": "F2Z5F7", "url": "https://www.uniprot.org/uniprotkb/F2Z5F7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5H5-1", "uniprot_ac": "F2Z5H5", "uniprot_id": "F2Z5H5_PIG", "mass": { "chemical_mass": 34159.0, "monoisotopic_mass": 34159.0 }, "refseq": {}, "gene_names": [ { "name": "OTP", "type": "recommended", "evidence": [ { "id": "F2Z5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" } ] } ], "protein_names": [ { "name": "Homeobox protein orthopedia", "type": "recommended", "evidence": [ { "id": "F2Z5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5H5", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OTP", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5", "locus": { "chromosome": "2", "start_pos": 86528348, "end_pos": 86537527, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000014099", "url": "https://www.ensembl.org/id/ENSSSCG00000014099" } ] } } ], "crossref": [ { "id": "F2Z5H5", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5H5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000014099", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000014099", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003654", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003654", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MLPGEDI", "url": "https://omabrowser.org/oma/group/MLPGEDI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR46770", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46770", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46770:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46770:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03826", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03826", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F2Z5H5", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5H5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT", "length": 325, "header": "tr|F2Z5H5-1|F2Z5H5_PIG Isoform 1 of Homeobox protein orthopedia OS=Sus scrofa OX=9823 GN=OTP PE=3 SV=1 CANONICAL=F2Z5H5-1" }, "isoforms": [ { "isoform_ac": "F2Z5H5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5/entry#F2Z5H5-1", "sequence": { "sequence": "MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT", "length": 325, "header": "tr|F2Z5H5-1|F2Z5H5_PIG Isoform 1 of Homeobox protein orthopedia OS=Sus scrofa OX=9823 GN=OTP PE=3 SV=1 CANONICAL=F2Z5H5-1" }, "locus": { "chromosome": "2", "start_pos": 86537328, "end_pos": 86529352, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000015401.3", "url": "https://www.ensembl.org/id/ENSSSCT00000015401.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000014992.1", "url": "https://www.ensembl.org/id/ENSSSCP00000014992.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 178, "start_aa": "Thr", "end_pos": 178, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr178", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 69, "start_aa": "Thr", "end_pos": 69, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr69", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5H5", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3V7E0-1", "protein_name": "Homeobox protein orthopedia", "gene_name": "Otp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT", "length": 325 }, "evidence": [ { "id": "F2Z5H5", "url": "https://omabrowser.org/oma/group/F2Z5H5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O09113-1", "protein_name": "Homeobox protein orthopedia", "gene_name": "Otp", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT", "length": 325 }, "evidence": [ { "id": "F2Z5H5", "url": "https://omabrowser.org/oma/group/F2Z5H5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5XKR4-1", "protein_name": "Homeobox protein orthopedia", "gene_name": "OTP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLSHADLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVSQLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT", "length": 325 }, "evidence": [ { "id": "F2Z5H5", "url": "https://omabrowser.org/oma/group/F2Z5H5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F2Z5H5", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F2Z5H5", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "F2Z5H5", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5H5", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F2Z5H5", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" } ], "pmid": "" }, { "name": "neuron differentiation", "id": "GO:0030182", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030182", "evidence": [ { "database": "UniProtKB", "id": "F2Z5H5", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 286, "end_pos": 288, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5H5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 325, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5H5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5H5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 102, "end_pos": 162, "start_aa": "Gln", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5H5" }, { "id": "PS50803", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50803" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "OAR", "eco_id": "ECO_0000259", "start_pos": 306, "end_pos": 319, "start_aa": "Thr", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 69, 178 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 205, "end_pos": 207 }, { "start_pos": 286, "end_pos": 288 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5J1-1", "uniprot_ac": "F2Z5J1", "uniprot_id": "F2Z5J1_PIG", "mass": { "chemical_mass": 49185.0, "monoisotopic_mass": 49185.0 }, "refseq": { "ac": "NP_001231080", "name": "26S proteasome regulatory subunit 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231080" }, "gene_names": [ { "name": "PSMC1", "type": "recommended", "evidence": [ { "id": "F2Z5J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ] }, { "name": "PSMC1", "type": "synonym", "evidence": [ { "id": "NP_001231080", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231080" } ] } ], "protein_names": [ { "name": "26S proteasome regulatory subunit 4", "type": "recommended", "evidence": [ { "id": "F2Z5J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1/entry#names_and_taxonomy" } ] }, { "name": "26S proteasome AAA-ATPase subunit RPT2", "type": "synonym", "evidence": [ { "id": "F2Z5J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1/entry#names_and_taxonomy" } ] }, { "name": "26S proteasome regulatory subunit 4", "type": "synonym", "evidence": [ { "id": "NP_001231080", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231080" } ] }, { "name": "Proteasome 26S subunit ATPase 1", "type": "synonym", "evidence": [ { "id": "F2Z5J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1/entry#names_and_taxonomy" } ] }, { "name": "protease (prosome, macropain) 26S subunit, ATPase 1", "type": "synonym", "evidence": [ { "id": "NP_001231080", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231080" } ] }, { "name": "proteasome (prosome, macropain) 26S subunit, ATPase, 1", "type": "synonym", "evidence": [ { "id": "NP_001231080", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231080" } ] } ], "function": [ { "annotation": "Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair. PSMC1 belongs to the heterohexameric ring of AAA (ATPases associated with diverse cellular activities) proteins that unfolds ubiquitinated target proteins that are concurrently translocated into a proteolytic chamber and degraded into peptides.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1#function" }, { "database": "UniProtKB", "id": "ARBA00053148", "url": "https://www.uniprot.org/uniprotkb/ARBA00053148#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMC1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1", "locus": { "chromosome": "7", "start_pos": 112041489, "end_pos": 112027921, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000002433", "url": "https://www.ensembl.org/id/ENSSSCG00000002433" } ] } } ], "crossref": [ { "id": "ENSSSCG00000002433", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000002433", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd19502", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19502", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100155274", "url": "https://www.ncbi.nlm.nih.gov/gene/100155274", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003959", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003959", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003960", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003960", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032501", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032501", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050221", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050221", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100155274", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155274", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QDDTDPM", "url": "https://omabrowser.org/oma/group/QDDTDPM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5J1", "url": "https://www.orthodb.org/?gene=F2Z5J1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23073", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23073", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00004", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00004", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16450", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16450", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17862", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17862", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1169091", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1234176", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1236978", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174084", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174154", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174178", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-174184", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-187577", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-202424", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2467813", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2871837", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-349425", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-350562", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-382556", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-450408", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4608870", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641257", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-4641258", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-532668", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-532668", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5358346", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607761", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5607764", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610780", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5610785", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5632684", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5658442", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5668541", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5676590", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5687128", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68867", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68949", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69017", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69481", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69601", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75815", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8852276", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8854050", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939236", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8939902", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8941858", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8948751", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9020702", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9755511", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9766229", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9907900", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9931269", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9932298", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "NP_001231080", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001231080", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5J1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL", "length": 440, "header": "tr|F2Z5J1-1|F2Z5J1_PIG Isoform 1 of 26S proteasome regulatory subunit 4 OS=Sus scrofa OX=9823 GN=PSMC1 PE=1 SV=1 CANONICAL=F2Z5J1-1" }, "isoforms": [ { "isoform_ac": "F2Z5J1-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1/entry#F2Z5J1-1", "sequence": { "sequence": "MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL", "length": 440, "header": "tr|F2Z5J1-1|F2Z5J1_PIG Isoform 1 of 26S proteasome regulatory subunit 4 OS=Sus scrofa OX=9823 GN=PSMC1 PE=1 SV=1 CANONICAL=F2Z5J1-1" }, "locus": { "chromosome": "7", "start_pos": 112041169, "end_pos": 112027948, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000002703.4", "url": "https://www.ensembl.org/id/ENSSSCT00000002703.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000002634.2", "url": "https://www.ensembl.org/id/ENSSSCP00000002634.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100155274", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100155274", "resource": "KEGG Pathway" }, { "id": "R-SSC-1169091", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1169091", "resource": "Reactome", "description": "Activation of NF-kappaB in B cells" }, { "id": "R-SSC-1234176", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1234176", "resource": "Reactome", "description": "Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha" }, { "id": "R-SSC-1236978", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1236978", "resource": "Reactome", "description": "Cross-presentation of soluble exogenous antigens (endosomes)" }, { "id": "R-SSC-174084", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174084", "resource": "Reactome", "description": "Autodegradation of Cdh1 by Cdh1:APC/C" }, { "id": "R-SSC-174154", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174154", "resource": "Reactome", "description": "APC/C:Cdc20 mediated degradation of Securin" }, { "id": "R-SSC-174178", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174178", "resource": "Reactome", "description": "APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1" }, { "id": "R-SSC-174184", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-174184", "resource": "Reactome", "description": "Cdc20:Phospho-APC/C mediated degradation of Cyclin A" }, { "id": "R-SSC-187577", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-187577", "resource": "Reactome", "description": "SCF(Skp2)-mediated degradation of p27/p21" }, { "id": "R-SSC-202424", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202424", "resource": "Reactome", "description": "Downstream TCR signaling" }, { "id": "R-SSC-2467813", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2467813", "resource": "Reactome", "description": "Separation of Sister Chromatids" }, { "id": "R-SSC-2871837", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2871837", "resource": "Reactome", "description": "FCERI mediated NF-kB activation" }, { "id": "R-SSC-349425", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-349425", "resource": "Reactome", "description": "Autodegradation of the E3 ubiquitin ligase COP1" }, { "id": "R-SSC-350562", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-350562", "resource": "Reactome", "description": "Regulation of ornithine decarboxylase (ODC)" }, { "id": "R-SSC-382556", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-382556", "resource": "Reactome", "description": "ABC-family protein mediated transport" }, { "id": "R-SSC-450408", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-450408", "resource": "Reactome", "description": "AUF1 (hnRNP D0) binds and destabilizes mRNA" }, { "id": "R-SSC-4608870", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4608870", "resource": "Reactome", "description": "Asymmetric localization of PCP proteins" }, { "id": "R-SSC-4641257", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641257", "resource": "Reactome", "description": "Degradation of AXIN" }, { "id": "R-SSC-4641258", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-4641258", "resource": "Reactome", "description": "Degradation of DVL" }, { "id": "R-SSC-532668", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-532668", "resource": "Reactome", "description": "N-glycan trimming in the ER and Calnexin/Calreticulin cycle" }, { "id": "R-SSC-5358346", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5358346", "resource": "Reactome", "description": "Hedgehog ligand biogenesis" }, { "id": "R-SSC-5607761", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607761", "resource": "Reactome", "description": "Dectin-1 mediated noncanonical NF-kB signaling" }, { "id": "R-SSC-5607764", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5607764", "resource": "Reactome", "description": "CLEC7A (Dectin-1) signaling" }, { "id": "R-SSC-5610780", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610780", "resource": "Reactome", "description": "Degradation of GLI1 by the proteasome" }, { "id": "R-SSC-5610785", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5610785", "resource": "Reactome", "description": "GLI3 is processed to GLI3R by the proteasome" }, { "id": "R-SSC-5632684", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5632684", "resource": "Reactome", "description": "Hedgehog 'on' state" }, { "id": "R-SSC-5658442", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5658442", "resource": "Reactome", "description": "Regulation of RAS by GAPs" }, { "id": "R-SSC-5668541", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5668541", "resource": "Reactome", "description": "TNFR2 non-canonical NF-kB pathway" }, { "id": "R-SSC-5676590", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5676590", "resource": "Reactome", "description": "NIK-->noncanonical NF-kB signaling" }, { "id": "R-SSC-5687128", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5687128", "resource": "Reactome", "description": "MAPK6/MAPK4 signaling" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-68867", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68867", "resource": "Reactome", "description": "Assembly of the pre-replicative complex" }, { "id": "R-SSC-68949", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68949", "resource": "Reactome", "description": "Orc1 removal from chromatin" }, { "id": "R-SSC-69017", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69017", "resource": "Reactome", "description": "CDK-mediated phosphorylation and removal of Cdc6" }, { "id": "R-SSC-69481", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69481", "resource": "Reactome", "description": "G2/M Checkpoints" }, { "id": "R-SSC-69601", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69601", "resource": "Reactome", "description": "Ubiquitin-Mediated Degradation of Phosphorylated Cdc25A" }, { "id": "R-SSC-75815", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75815", "resource": "Reactome", "description": "Ubiquitin-dependent degradation of Cyclin D" }, { "id": "R-SSC-8852276", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8852276", "resource": "Reactome", "description": "The role of GTSE1 in G2/M progression after G2 checkpoint" }, { "id": "R-SSC-8854050", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8854050", "resource": "Reactome", "description": "FBXL7 down-regulates AURKA during mitotic entry and in early mitosis" }, { "id": "R-SSC-8939236", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939236", "resource": "Reactome", "description": "RUNX1 regulates transcription of genes involved in differentiation of HSCs" }, { "id": "R-SSC-8939902", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8939902", "resource": "Reactome", "description": "Regulation of RUNX2 expression and activity" }, { "id": "R-SSC-8941858", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8941858", "resource": "Reactome", "description": "Regulation of RUNX3 expression and activity" }, { "id": "R-SSC-8948751", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8948751", "resource": "Reactome", "description": "Regulation of PTEN stability and activity" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" }, { "id": "R-SSC-9020702", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9020702", "resource": "Reactome", "description": "Interleukin-1 signaling" }, { "id": "R-SSC-9755511", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9755511", "resource": "Reactome", "description": "KEAP1-NFE2L2 pathway" }, { "id": "R-SSC-9766229", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9766229", "resource": "Reactome", "description": "Degradation of CDH1" }, { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" }, { "id": "R-SSC-9907900", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9907900", "resource": "Reactome", "description": "Proteasome assembly" }, { "id": "R-SSC-9931269", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9931269", "resource": "Reactome", "description": "AMPK-induced ERAD and lysosome mediated degradation of PD-L1(CD274)" }, { "id": "R-SSC-9932298", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9932298", "resource": "Reactome", "description": "Degradation of CRY and PER proteins" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0Z3K2-1", "protein_name": "26S proteasome regulatory subunit 4", "gene_name": "PSMC1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL", "length": 440 }, "evidence": [ { "id": "F2Z5J1", "url": "https://omabrowser.org/oma/group/F2Z5J1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "P40327-1", "protein_name": "26S proteasome regulatory subunit 4 homolog", "gene_name": "RPT2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MGQGVSSGQDKKKKKGSNQKPKYEPPVQSKFGRKKRKGGPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGLYL", "length": 437 }, "evidence": [ { "id": "F2Z5J1", "url": "https://omabrowser.org/oma/group/F2Z5J1/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P48601-1", "protein_name": "26S proteasome regulatory subunit 4", "gene_name": "Rpt2", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MGQNQSAQGGAGEKKDDKDKKKKYEPPIPTRVGKKKRRAKGPDAAMKLPQVTPHTRCRLKLLKLERIKDYLMMEDEFIRNQERLKPQDEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL", "length": 439 }, "evidence": [ { "id": "F2Z5J1", "url": "https://omabrowser.org/oma/group/F2Z5J1/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "P62191-1", "protein_name": "26S proteasome regulatory subunit 4", "gene_name": "PSMC1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL", "length": 440 }, "evidence": [ { "id": "F2Z5J1", "url": "https://omabrowser.org/oma/group/F2Z5J1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P62192-1", "protein_name": "26S proteasome regulatory subunit 4", "gene_name": "Psmc1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL", "length": 440 }, "evidence": [ { "id": "F2Z5J1", "url": "https://omabrowser.org/oma/group/F2Z5J1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P62193-1", "protein_name": "26S proteasome regulatory subunit 4", "gene_name": "Psmc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSQSGGHGPGGGKKDDKDKKKKYEPPVPTRVGKKKKKTKGPDAASKLPLVTPHTQCRLKLLKLERIKDYLLMEEEFIRNQEQMKPLEEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL", "length": 440 }, "evidence": [ { "id": "F2Z5J1", "url": "https://omabrowser.org/oma/group/F2Z5J1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q55BV5-1", "protein_name": "26S proteasome regulatory subunit 4 homolog", "gene_name": "psmC1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNNQSQGQGDKGEKKDQPKYQPPPPPTQFGKKKKRRGAETSTKLPVITPHSKCKLKQLKLERIKDYLLMEQEFLQNYDLNQPKVDENSKEQADEKIIEELRGDPLTVGNLEEIIDDNHAIVSSTVGPEHYVRIMSFVDKSKLYLGATVLLNNKTLSVVGVIDGEVDPMVNVMKVEKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKTAGAPEGLYM", "length": 439 }, "evidence": [ { "id": "F2Z5J1", "url": "https://omabrowser.org/oma/group/F2Z5J1/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9SZD4-1", "protein_name": "26S proteasome regulatory subunit 4 homolog A", "gene_name": "RPT2A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGQGPSGGLNRQGDRKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKKEGVPEGLYM", "length": 443 }, "evidence": [ { "id": "F2Z5J1", "url": "https://omabrowser.org/oma/group/F2Z5J1/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "proteasome regulatory particle, base subcomplex", "id": "GO:0008540", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008540", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "pmid": "" }, { "name": "ATP hydrolysis activity", "id": "GO:0016887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016887", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "pmid": "" }, { "name": "peptidase activity", "id": "GO:0008233", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008233", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "pmid": "" }, { "name": "proteasome-activating activity", "id": "GO:0036402", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036402", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5J1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J1" }, { "id": "SM00382", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00382" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AAA+ ATPase", "eco_id": "ECO_0000259", "start_pos": 218, "end_pos": 357, "start_aa": "Pro", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 241, "end_pos": 243 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5J7-1", "uniprot_ac": "F2Z5J7", "uniprot_id": "F2Z5J7_PIG", "mass": { "chemical_mass": 19593.0, "monoisotopic_mass": 19593.0 }, "refseq": {}, "gene_names": [ { "name": "ELOF1", "type": "recommended", "evidence": [ { "id": "F2Z5J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7" } ] } ], "protein_names": [ { "name": "Transcription elongation factor 1 homolog", "type": "recommended", "evidence": [ { "id": "F2Z5J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Factor involved in transcription-coupled nucleotide excision repair (TC-NER), a mechanism that rapidly removes RNA polymerase II-blocking lesions from the transcribed strand of active genes. Acts as a key adapter required to anchor TC-NER factors to RNA polymerase II: stably positions UVSSA and the DCX(ERCC8) complex (also named CSA complex) on arrested RNA polymerase II, leading to neddylation and activation of the DCX(ERCC8) complex and ubiquitination of RNA polymerase II.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J7", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7#function" }, { "database": "UniProtKB", "id": "ARBA00058793", "url": "https://www.uniprot.org/uniprotkb/ARBA00058793#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5J7", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ELOF1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7", "locus": {} } ], "crossref": [ { "id": "F2Z5J7", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5J7", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000013613", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000013613", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR007808", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007808", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038567", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038567", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR20934", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20934", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20934:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20934:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05129", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05129", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F2Z5J7", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5J7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TFARAGGRWEPGGTGALRLRGTHGAEAPRAQGLGGGPARSLTPPGPSPPSAAAGRPGSSRQEATPKPRGFCYRWYPGRALVRKFNRTLFPQVCPPADMGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAANQ", "length": 180, "header": "tr|F2Z5J7-1|F2Z5J7_PIG Isoform 1 of Transcription elongation factor 1 homolog OS=Sus scrofa OX=9823 GN=ELOF1 PE=1 SV=2 CANONICAL=F2Z5J7-1" }, "isoforms": [ { "isoform_ac": "F2Z5J7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7/entry#F2Z5J7-1", "sequence": { "sequence": "TFARAGGRWEPGGTGALRLRGTHGAEAPRAQGLGGGPARSLTPPGPSPPSAAAGRPGSSRQEATPKPRGFCYRWYPGRALVRKFNRTLFPQVCPPADMGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAANQ", "length": 180, "header": "tr|F2Z5J7-1|F2Z5J7_PIG Isoform 1 of Transcription elongation factor 1 homolog OS=Sus scrofa OX=9823 GN=ELOF1 PE=1 SV=2 CANONICAL=F2Z5J7-1" }, "locus": { "chromosome": "2", "start_pos": 70199776, "end_pos": 70194319, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000086527.2", "url": "https://www.ensembl.org/id/ENSSSCT00000086527.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000068958.2", "url": "https://www.ensembl.org/id/ENSSSCP00000068958.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J7", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "transcription elongation factor complex", "id": "GO:0008023", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008023", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J7", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "transcription elongation by RNA polymerase II", "id": "GO:0006368", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006368", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J7", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA polymerase II complex binding", "id": "GO:0000993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000993", "evidence": [ { "database": "UniProtKB", "id": "F2Z5J7", "url": "https://www.uniprot.org/uniprotkb/F2Z5J7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 85, "end_pos": 87, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5J7-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 180, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5J7-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5J7" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 85, "end_pos": 87 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5K2-1", "uniprot_ac": "F2Z5K2", "uniprot_id": "F2Z5K2_PIG", "mass": { "chemical_mass": 26411.0, "monoisotopic_mass": 26411.0 }, "refseq": { "ac": "NP_001138373", "name": "proteasome subunit alpha type-5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138373" }, "gene_names": [ { "name": "PSMA5", "type": "recommended", "evidence": [ { "id": "F2Z5K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" } ] }, { "name": "PSMA5", "type": "synonym", "evidence": [ { "id": "NP_001138373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138373" } ] } ], "protein_names": [ { "name": "Proteasome subunit alpha type", "type": "recommended", "evidence": [ { "id": "F2Z5K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2/entry#names_and_taxonomy" } ] }, { "name": "proteasome (prosome, macropain) subunit, alpha type, 5", "type": "synonym", "evidence": [ { "id": "NP_001138373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138373" } ] }, { "name": "proteasome subunit alpha 5", "type": "synonym", "evidence": [ { "id": "NP_001138373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138373" } ] }, { "name": "proteasome subunit alpha type-5", "type": "synonym", "evidence": [ { "id": "NP_001138373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138373" } ] }, { "name": "proteasome subunit type alpha 5", "type": "synonym", "evidence": [ { "id": "NP_001138373", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138373" } ] } ], "function": [ { "annotation": "Component of the 20S core proteasome complex involved in the proteolytic degradation of most intracellular proteins. This complex plays numerous essential roles within the cell by associating with different regulatory particles. Associated with two 19S regulatory particles, forms the 26S proteasome and thus participates in the ATP-dependent degradation of ubiquitinated proteins. The 26S proteasome plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins that could impair cellular functions, and by removing proteins whose functions are no longer required. Associated with the PA200 or PA28, the 20S proteasome mediates ubiquitin-independent protein degradation. This type of proteolysis is required in several pathways including spermatogenesis (20S-PA200 complex) or generation of a subset of MHC class I-presented antigenic peptides (20S-PA28 complex).", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2#function" }, { "database": "UniProtKB", "id": "ARBA00003876", "url": "https://www.uniprot.org/uniprotkb/ARBA00003876#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PSMA5", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2", "locus": { "chromosome": "4", "start_pos": 110717290, "end_pos": 110662692, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000006830", "url": "https://www.ensembl.org/id/ENSSSCG00000006830" } ] } } ], "crossref": [ { "id": "ENSSSCG00000006830", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000006830", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03753", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03753", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "497063", "url": "https://www.ncbi.nlm.nih.gov/gene/497063", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000426", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000426", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001353", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001353", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050115", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050115", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:497063", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:497063", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RSMIDHA", "url": "https://omabrowser.org/oma/group/RSMIDHA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5K2", "url": "https://www.orthodb.org/?gene=F2Z5K2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11599", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11599", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10584", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10584", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "NP_001138373", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001138373", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5K2-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI", "length": 241, "header": "tr|F2Z5K2-1|F2Z5K2_PIG Isoform 1 of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA5 PE=1 SV=3 CANONICAL=F2Z5K2-1" }, "isoforms": [ { "isoform_ac": "F2Z5K2-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2/entry#F2Z5K2-1", "sequence": { "sequence": "MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI", "length": 241, "header": "tr|F2Z5K2-1|F2Z5K2_PIG Isoform 1 of Proteasome subunit alpha type OS=Sus scrofa OX=9823 GN=PSMA5 PE=1 SV=3 CANONICAL=F2Z5K2-1" }, "locus": { "chromosome": "4", "start_pos": 110717131, "end_pos": 110695541, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007481.5", "url": "https://www.ensembl.org/id/ENSSSCT00000007481.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007285.4", "url": "https://www.ensembl.org/id/ENSSSCP00000007285.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:497063", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:497063", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A061IPM3-1", "protein_name": "Proteasome subunit alpha type", "gene_name": "Psma5", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI", "length": 241 }, "evidence": [ { "id": "F2Z5K2", "url": "https://omabrowser.org/oma/group/F2Z5K2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P28066-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PSMA5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI", "length": 241 }, "evidence": [ { "id": "F2Z5K2", "url": "https://omabrowser.org/oma/group/F2Z5K2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P32379-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PUP2", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MFLTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKEAAESPEEADVEMS", "length": 260 }, "evidence": [ { "id": "F2Z5K2", "url": "https://omabrowser.org/oma/group/F2Z5K2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P34064-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "Psma5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFLTRSEYDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI", "length": 241 }, "evidence": [ { "id": "F2Z5K2", "url": "https://omabrowser.org/oma/group/F2Z5K2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q42134-1", "protein_name": "Proteasome subunit alpha type-5-B", "gene_name": "PAE2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVMEEKVTPNNVDIAKVAPAYHLYTPQEVEAVISRL", "length": 237 }, "evidence": [ { "id": "F2Z5K2", "url": "https://omabrowser.org/oma/group/F2Z5K2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q55G04-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "psmA5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFLTRSEYDRGVNTFSPEGRLFQVEYALEAIKLGIGVQCEEGVVLAVEKRLTSPLLEPSSIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEKGPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYSKTLTIAECQKLALTTLKQVMEEAITTTNVELAVITKADQKFKIYNKEELATVIQTLE", "length": 241 }, "evidence": [ { "id": "F2Z5K2", "url": "https://omabrowser.org/oma/group/F2Z5K2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5E987-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "PSMA5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI", "length": 241 }, "evidence": [ { "id": "F2Z5K2", "url": "https://omabrowser.org/oma/group/F2Z5K2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q95083-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "Prosalpha5", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQVMEEKLNSTNVEVMTMTKEREFYMFTKEEVEQHIKNIA", "length": 244 }, "evidence": [ { "id": "F2Z5K2", "url": "https://omabrowser.org/oma/group/F2Z5K2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Z2U1-1", "protein_name": "Proteasome subunit alpha type-5", "gene_name": "Psma5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKDI", "length": 241 }, "evidence": [ { "id": "F2Z5K2", "url": "https://omabrowser.org/oma/group/F2Z5K2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" } ], "pmid": "" }, { "name": "proteasome core complex, alpha-subunit complex", "id": "GO:0019773", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019773", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "response to oxidative stress", "id": "GO:0006979", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006979", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" } ], "pmid": "" }, { "name": "proteasome-mediated ubiquitin-dependent protein catabolic process", "id": "GO:0043161", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043161", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" } ], "pmid": "" }, { "name": "regulation of proteasomal protein catabolic process", "id": "GO:0061136", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061136", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K2", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5K2" }, { "id": "PS00388", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00388" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Proteasome alpha-type subunits", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 30, "start_aa": "Tyr", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 211, "end_pos": 213 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5K9-1", "uniprot_ac": "F2Z5K9", "uniprot_id": "F2Z5K9_PIG", "mass": { "chemical_mass": 14550.0, "monoisotopic_mass": 14550.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "H3 clustered histone 10", "type": "synonym", "evidence": [ { "id": "F2Z5K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9", "locus": {} } ], "crossref": [ { "id": "F2Z5K9", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5K9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000033550", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000033550", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd22911", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22911", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR11426", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11426", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00125", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00125", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5K9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIETIRGYRKQQIKFRVLFSPVTGWPHRYWPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 123, "header": "tr|F2Z5K9-1|F2Z5K9_PIG Isoform 1 of H3 clustered histone 10 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F2Z5K9-1" }, "isoforms": [ { "isoform_ac": "F2Z5K9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9/entry#F2Z5K9-1", "sequence": { "sequence": "MIETIRGYRKQQIKFRVLFSPVTGWPHRYWPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 123, "header": "tr|F2Z5K9-1|F2Z5K9_PIG Isoform 1 of H3 clustered histone 10 OS=Sus scrofa OX=9823 GN= PE=3 SV=3 CANONICAL=F2Z5K9-1" }, "locus": { "chromosome": "7", "start_pos": 21585826, "end_pos": 21585249, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028746.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028746.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000025803.3", "url": "https://www.ensembl.org/id/ENSSSCP00000025803.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "kinetochore assembly", "id": "GO:0051382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051382", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" }, { "name": "mitotic metaphase chromosome alignment", "id": "GO:0007080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007080", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" }, { "name": "heterochromatin formation", "id": "GO:0031507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031507", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" }, { "name": "nucleosome", "id": "GO:0000786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000786", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" }, { "name": "nucleosomal DNA binding", "id": "GO:0031492", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031492", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" }, { "name": "structural constituent of chromatin", "id": "GO:0030527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030527", "evidence": [ { "database": "UniProtKB", "id": "F2Z5K9", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5K9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 123, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5K9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5K9" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5K9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5K9" }, { "id": "PF00125", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00125" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Core Histone H2A/H2B/H3", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 118, "start_aa": "Pro", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5L2-1", "uniprot_ac": "F2Z5L2", "uniprot_id": "F2Z5L2_PIG", "mass": { "chemical_mass": 14095.0, "monoisotopic_mass": 14095.0 }, "refseq": {}, "gene_names": [ { "name": "H2AC18", "type": "recommended", "evidence": [ { "id": "F2Z5L2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ] }, { "name": "H2AC19", "type": "synonym", "evidence": [ { "id": "F2Z5L2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ] } ], "protein_names": [ { "name": "Histone H2A", "type": "recommended", "evidence": [ { "id": "F2Z5L2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2#function" }, { "database": "UniProtKB", "id": "ARBA00002001", "url": "https://www.uniprot.org/uniprotkb/ARBA00002001#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "H2AC18", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000032769", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000032769", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00074", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00074", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032454", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032454", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032458", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032458", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MITSFNF", "url": "https://omabrowser.org/oma/group/MITSFNF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR23430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00125", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00125", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16211", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16211", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110330", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110330", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-110331", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110331", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-171306", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171306", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-201722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-212300", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212300", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2299718", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2299718", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559580", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559582", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559582", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559586", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559586", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3214858", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214858", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-427359", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-427359", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5250924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5578749", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578749", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625886", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625886", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689901", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689901", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-606279", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68616", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68616", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73728", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73728", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73772", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8936459", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8936459", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9018519", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9670095", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9670095", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9764725", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9841922", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9841922", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843940", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843970", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843970", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9909649", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909649", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9940951", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9943411", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9943962", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943962", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9970672", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9970672", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5L2-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130, "header": "tr|F2Z5L2-1|F2Z5L2_PIG Isoform 1 of Histone H2A OS=Sus scrofa OX=9823 GN=H2AC18 PE=3 SV=1 CANONICAL=F2Z5L2-1" }, "isoforms": [ { "isoform_ac": "F2Z5L2-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2/entry#F2Z5L2-1", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130, "header": "tr|F2Z5L2-1|F2Z5L2_PIG Isoform 1 of Histone H2A OS=Sus scrofa OX=9823 GN=H2AC18 PE=3 SV=1 CANONICAL=F2Z5L2-1" }, "locus": { "chromosome": "4", "start_pos": 99198050, "end_pos": 99197661, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007310.2", "url": "https://www.ensembl.org/id/ENSSSCT00000007310.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007115.1", "url": "https://www.ensembl.org/id/ENSSSCP00000007115.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-110330", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110330", "resource": "Reactome", "description": "Recognition and association of DNA glycosylase with site containing an affected purine" }, { "id": "R-SSC-110331", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110331", "resource": "Reactome", "description": "Cleavage of the damaged purine" }, { "id": "R-SSC-171306", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171306", "resource": "Reactome", "description": "Packaging Of Telomere Ends" }, { "id": "R-SSC-201722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "resource": "Reactome", "description": "Formation of the beta-catenin:TCF transactivating complex" }, { "id": "R-SSC-212300", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212300", "resource": "Reactome", "description": "PRC2 methylates histones and DNA" }, { "id": "R-SSC-2299718", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2299718", "resource": "Reactome", "description": "Condensation of Prophase Chromosomes" }, { "id": "R-SSC-2559580", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "resource": "Reactome", "description": "Oxidative Stress Induced Senescence" }, { "id": "R-SSC-2559582", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559582", "resource": "Reactome", "description": "Senescence-Associated Secretory Phenotype (SASP)" }, { "id": "R-SSC-2559586", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559586", "resource": "Reactome", "description": "DNA Damage/Telomere Stress Induced Senescence" }, { "id": "R-SSC-3214858", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214858", "resource": "Reactome", "description": "RMTs methylate histone arginines" }, { "id": "R-SSC-427359", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-427359", "resource": "Reactome", "description": "SIRT1 negatively regulates rRNA expression" }, { "id": "R-SSC-5250924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "resource": "Reactome", "description": "B-WICH complex positively regulates rRNA expression" }, { "id": "R-SSC-5578749", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578749", "resource": "Reactome", "description": "Transcriptional regulation by small RNAs" }, { "id": "R-SSC-5625886", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625886", "resource": "Reactome", "description": "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-5689901", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689901", "resource": "Reactome", "description": "Metalloprotease DUBs" }, { "id": "R-SSC-606279", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "resource": "Reactome", "description": "Deposition of new CENPA-containing nucleosomes at the centromere" }, { "id": "R-SSC-68616", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68616", "resource": "Reactome", "description": "Assembly of the ORC complex at the origin of replication" }, { "id": "R-SSC-73728", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73728", "resource": "Reactome", "description": "RNA Polymerase I Promoter Opening" }, { "id": "R-SSC-73772", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "resource": "Reactome", "description": "RNA Polymerase I Promoter Escape" }, { "id": "R-SSC-8936459", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8936459", "resource": "Reactome", "description": "RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function" }, { "id": "R-SSC-9018519", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "resource": "Reactome", "description": "Estrogen-dependent gene expression" }, { "id": "R-SSC-9670095", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9670095", "resource": "Reactome", "description": "Inhibition of DNA recombination at telomere" }, { "id": "R-SSC-9764725", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "resource": "Reactome", "description": "Negative Regulation of CDH1 Gene Transcription" }, { "id": "R-SSC-9841922", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9841922", "resource": "Reactome", "description": "MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis" }, { "id": "R-SSC-9843940", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "resource": "Reactome", "description": "Regulation of endogenous retroelements by KRAB-ZFP proteins" }, { "id": "R-SSC-9843970", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843970", "resource": "Reactome", "description": "Regulation of endogenous retroelements by the Human Silencing Hub (HUSH) complex" }, { "id": "R-SSC-9909649", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909649", "resource": "Reactome", "description": "Regulation of PD-L1(CD274) transcription" }, { "id": "R-SSC-9940951", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "resource": "Reactome", "description": "Interaction of NuRD complexes with transcription factors" }, { "id": "R-SSC-9943411", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "resource": "Reactome", "description": "CHD1 and CHD2 subfamily" }, { "id": "R-SSC-9943962", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943962", "resource": "Reactome", "description": "CHD6, CHD7, CHD8, CHD9 subfamily" }, { "id": "R-SSC-9970672", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9970672", "resource": "Reactome", "description": "FXIIa activates plasma kallikrein-kinin system" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A075B5S0-1", "protein_name": "Immunoglobulin heavy variable 16-1", "gene_name": "Ighv16-1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "EVQLVESGGSLGQPGGSTKLSCEEASGFTFSDHWMDWFRQAPGMRLEWLANTNHDESGKGYAESVKDRFSISRDNSENLLYLQMNSLRNEDTALYYCAR", "length": 99 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B603-1", "protein_name": "T cell receptor alpha variable 6D-6", "gene_name": "Trav6-6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSPGFVAVILLILGRTHGDSVTQTEGPVTVSESESLIINCTYSATSIAYPNLFWYVRYPGEGLQLLLKVITAGQKGSSRGFEATYNKETTSFHLQKASVQESDSAVYYCALG", "length": 114 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B625-1", "protein_name": "T cell receptor alpha variable 4N-3", "gene_name": "Trav4n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERNLGAVLGILWVQICWVSGDKVKQSPSALSLQEGTNSALRCNFSIAATTVQWFLQNPRGSLMNLFYLVPGTKENGRLKSAFDSKESYSTLHIRDAQLEDSGTYFCAAE", "length": 110 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B695-1", "protein_name": "T cell receptor alpha variable 9D-3", "gene_name": "Trav9d-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLALLPVLGIHFLLRDAQAQSVTQPDARVTVSEGASLQLRCKYSYFGTPYLFWYVQYPRQGLQLLLKYYPGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDWAVYFCAVS", "length": 113 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6B4-1", "protein_name": "T cell receptor alpha variable 6-4", "gene_name": "Trav6-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNTSPVLVTVMLLFMLGMRKTHGDSVTQKQGQVTLSEDDFLFINCTYSTTTYPTLLWYVQYLGQGPQLLLKVTTANNKGISRGFEATYDKGTTSFHLQKASVQESDSAVYFCALV", "length": 115 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B6D8-1", "protein_name": "T cell receptor alpha variable 3-3", "gene_name": "Trav3-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "GEQVEQRPPHLSVREGDSAVITCTYTDPNSYYFFWYKQEPGASLQLLMKVFSSTEINEGQGFTVLLNKKDKRLSLNLTAAHPGDSAAYFCAV", "length": 92 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A075B759-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4E", "gene_name": "PPIAL4E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A075B767-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4H", "gene_name": "PPIAL4H", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFDITVDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTDDKSIYGEKFDDENLIRKHTGSGILSMVNAGPNTNGSQLFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WP50-1", "protein_name": "Secretoglobin, family 1B, member 15", "gene_name": "Scgb1b17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMLAGAVVIFGVALLLLSSWGDCGICPAMKEDVHLFLNGTSEEYVEYVKQYKDDPEILENTEKIKQCVDSTLMEEDKAHANGFIEKIEASPLC", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPA9-1", "protein_name": "Secretoglobin, family 2B, member 18", "gene_name": "Scgb2b18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQSCYSEERIRNILLEPKIMEAMVASPECRSYHSFNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPG5-1", "protein_name": "Predicted gene 13283", "gene_name": "Gm13283", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLADLRSVPGHQCLRDRTDFPCPWKEGTNITQMTLGETTSCYSQSLRQVLHRFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WPY7-1", "protein_name": "RNA binding motif protein Y-linked family member 4", "gene_name": "Rbmyf4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKR", "length": 166 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQA9-1", "protein_name": "Secretoglobin, family 2B, member 21", "gene_name": "Scgb2b21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACVPFFEGYASVVSGSRVWMYQEFQAFDATAEEKVALEKIQGCYREESLRNILLEPKIMEAMVASPECLSYYSSNNIRCILDLLSKLLGQ", "length": 112 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQJ0-1", "protein_name": "Secretoglobin, family 1B, member 11", "gene_name": "Scgb1b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLVAAVVILGAALLLLTSGGDCGICPAIKEDVRLFLNGTSEEYVEYVKQYKDDPVILENTAKINQCVDSTLTEKDMTHTTTFLKKIEDSLLC", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WQP8-1", "protein_name": "Predicted gene, 21698", "gene_name": "Gm21698", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHGQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR36-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r90", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNEAMKTTEEVALQIVLLCQFGIGTMANILLFIHNFSPLLTGCQLRPKQVICTNMAVSSILILFMTVFPNNVFVVQRNLMNDLQCKLEYFLRMVARSINLCSTCVLSTYQFVTLLPGNFGEMMVRGRRSKVISYSCCSCWLFGVLYNVYIPMKVSGPQNTHNKTDIKSKWFCVTSGFSVGIMFLWFAHDAIFISIMIWTSVSMVLLLYRHYQRLQYIFPPHQGTRGYAEIRAAHSIAMLVVTFVSFYLLHCICFILHIVFVDSRLWLRHVGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYRKPVI", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR44-1", "protein_name": "BTB domain containing 35, family member 15", "gene_name": "Btbd35f15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WR49-1", "protein_name": "Secretoglobin, family 2B, member 11", "gene_name": "Scgb2b11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTSEACVSFFEGYASVLSGSRVWLYQELQAFDATAEEKVALEKIQGCYSEERIRNILLEPKIMEAMVASPECRSYHSLNNFRSILEFISNLLGE", "length": 112 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSM5-1", "protein_name": "Predicted gene 29049", "gene_name": "Gm29049", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTSLKKKSRRKPSSQALGNIVGCRISYGWKEGNEPVTHWKAIILGQLPTNPSLYLVKYDGIDSVYGQELHSDERILNLKVLPHKVVFLQVRDVHLASALVCREVQHKFEGKDGSEDNWSGMVLAQVPFLQDYFYISYKKDPVLYVYQLLDDYKEGNLHIIPETPLAEARSGDDNDFLIGSWVQYTRDDGSKKFGKVVYKVLANSTVYCIKFLGDLHIYVYTLVSNIT", "length": 227 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WSN2-1", "protein_name": "BTB domain containing 35, family member 16", "gene_name": "Btbd35f16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLLFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLNFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A087WUL8-1", "protein_name": "NBPF family member NBPF19", "gene_name": "NBPF19", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRNLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLFHSQERELTQLREKLREGRDASRSLNEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGPYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELVEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSIPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYILEQQCVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLAEKEPEVLQDPLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNSVLMEVEEPEVLQDSLDGCYSTPSMYFELPDSFQHYRSVFYSFEEEHISFALYLDNRFFTLTVTSLHLVFQMLVIFPQ", "length": 3843 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087WXS9-1", "protein_name": "TBC1 domain family member 3I", "gene_name": "TBC1D3I", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKMKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A087X179-1", "protein_name": "TBC1 domain family member 3E", "gene_name": "TBC1D3E", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDQAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKKSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0A0MQP3-1", "protein_name": "BTB domain containing 35, family member 12", "gene_name": "Btbd35f12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDSDLSITPLEVPQGLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YW58-1", "protein_name": "Immunoglobulin heavy variable V8-2", "gene_name": "Ighv8-2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGRLTFSFLLLLPVPAYVLSQVTLKVSGPGILQPSQTLSLACTFSGISLSTSGMGLSWLRKPSGKALEWLASIWNNDNYYNPSLKSRLTISKETSNYQVFLKLTSVDTADSATYYGAWR", "length": 119 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXW2-1", "protein_name": "Predicted gene, 20773", "gene_name": "Gm20773", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKIFKVEKS", "length": 232 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0A6YXX7-1", "protein_name": "Predicted gene, 20807", "gene_name": "Gm20807", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVGCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHTFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKVLEVEKS", "length": 232 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0B4J1J8-1", "protein_name": "T cell receptor gamma, variable 4", "gene_name": "Trgv4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNPGSQALLPLYLPWEANLADENPLLKVVIFLCLLTFGHGKLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG", "length": 138 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JE01-1", "protein_name": "Predicted gene, 21663", "gene_name": "Gm21663", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADPPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JGR8-1", "protein_name": "Predicted gene, 21680", "gene_name": "Gm21680", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPSESNEGRRRWTWRMWMAHRQTTSPVPVTSKKQFEKEEKELIKKIQLTTKEINELRDRLIYVTKGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELVLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A0G2JMD5-1", "protein_name": "PRAME family member 33", "gene_name": "PRAMEF33", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSLQAPSRLLELAGQSLLRNQFLTIFTLDELPREVFPLMFMEAFSMRRFEALKLMVQAWPFLRLPLGSLMKTPHLETLQAVLRGLDTLVAQKVRPRRWKLQVLDLQDVDENFWTIWSGARVLSCSPEAMSKRQTVEDCPRMGEHQPLKVFIDLCLKESTLDECLSYLFGWIHYRRGLVHLCCSKVQNYSMPTSSFRNLLERIYPDSIQELEVWKKCSLNKTGKFAPYLSQMSNLRELFLAFGYERELYVSVQWPCIPDLDSPFLCLYYPQMLYIKKISNIKEHLEHLLRYLKNPLGAFIFSDAYLADRDMECLSQYPSLSQLKELRLIHILMWTTNLQPLGALLEKVAATLKTLVLKDCRIQDPQLRVLLPALSHCSQLTTFNFHGNETSMNALKDLLRHTRGLSKLGLELYPAPLESLDYKGHVNWEILTPIRAELMRTLREVRQPKRIFFGPVPCPTCGSWPSEKVDFHLCS", "length": 474 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JNH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC124905359", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKIANNTVVTEFILLGLTQSQDIQLLVFVLILIFYLIILPGNFLIIFTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFFSEKKVISYRGCITQLFFLHFLGGGEGLLLVVMAFDRYIAICRPLHCSTVMNPRACYAMMLALWLGGFVHSIIQVVLILRLPFCGPNQLDNFFCDVRQVIKLACTDMFVVELLMVFNSGLMTLLCFLGLLASYAVILCHVRRAASEGKNKAMSMCTTRVIIILLMFGPAIFIYMCPFRALPADKMVSLFHTVIFPLMNPMIYTLRNQEVKTSMKRLLSRHVVCQVDFIIRN", "length": 316 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A0G2JTV6-1", "protein_name": "RIKEN cDNA 4931429L15 gene like", "gene_name": "4931429L15Rikl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQFNPFSQDTWRHGHRRAYSNISERLSCLTLQEPSVSHLYQIFSPGDRRSYLLDDSLSNSIQRESLAVPMGLEDSGSRGQQKQQQPGAVLEDLEEQEIAPTDVKYRLQLLDEAPLRSKSSSVQSQGHKPGWIPSSKTHREWFKPWKMDMTYPENERSHSGHTQGRRMTPRAQWRHVEYDSQDQDTQSPVWSQALFPGLDKSSQGVIQCTQHVSREREMVSGWSMTHAPQEMGQAKQGPAFLKTKGTAKFNVATTARMSCLPPLKLLEKKVKSRCPPNTPGIFQDWRAQPQGLYGSDERLLAPFEDQVNTRVTYMPLFTEKVKFVSPKTAVSNPKQTHSQLSRTNQPAFPGQFRNWTSGREHLEKGLPE", "length": 368 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JVP7-1", "protein_name": "40S ribosomal protein S26", "gene_name": "Rps26-ps4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKKRRNNGRTKKGRGHVQPIGCANCSWCVPKDKAIKKFVIWNIVETAAVRDISEARIFDAYVLPKLYVKLHYCVSLAIHSKVIRNQSHEARKDRTSPPRFRPAGAAPRPPPKPM", "length": 115 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW93-1", "protein_name": "High mobility group protein B4", "gene_name": "Hmgb4l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGKDSKVRPKVNVSPYVHFMMDFRNQTREQQPNTYYDFTEFSRKCSEKWKTISKKEKKKYEALAKRDKDRYQREMRNYSGPRRERRRRDPDAPRKPPSSFLLFSQDHFDEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEEREAYYHQCQRGE", "length": 168 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JW96-1", "protein_name": "Zinc finger protein 94 like 1", "gene_name": "Zfp94l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLPRGSCDVMLESLRNVASLGHRIGTPDGLLRLKREDMFWLLTVARWSSGSMGDKNLEDMEFLEEVGLRHLPHEELFCSQIWQRITRELTKVRDCRVRVGENGSPMKRDNREDEYSKHSSQNSVFQVHHRECHEEEANERDFGCSHHLRTSTGEKSYKCEKCHNASHWFSSLQSHQGVCDRPRWNKSVSQFKIFRQWPLFHYQQSMPNGENAQEYEACGNAGKNSSGQTALFVHTAEEPYSCEECGARFSQSSYLQVHQRVHTGEKPYKCEECGKGFGWLSQLHAHHQSHTGEKPYTCDACGKGFSYSSHLNIHCRIHTGEKPYQCEECGKGFSQASNLLAHQRGHTGEKPYQCDACGKGFSRISDFNIHIRVHTGEKPYKCEECGKGFSQASNLLAHQRGHTGEKPYKCNTCGKSFRRSSDLNVHCRIHTGEKPYRCEKCDKVFSQFSSLQVHQRVHTGEKPYQCSECGKGFSVGSQLQAHQRCHTGERPYQCEECGKGFCRASNFLAHHGVHTGEKPYRCDMCGKHFRQRSYLQAHHRVHTGEKQFRCEECGKGFSWSSYLQAHQRVHMGEKPYKCEECGKGFSWSSSLLTHQRVHAEDEGQKDLSSSGGSYRK", "length": 616 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2JYP5-1", "protein_name": "Olfactory receptor", "gene_name": "Or8g52b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEGNHSRVTEFILTGLTDKPELQLPLFLLFLGIYLLTVLGNLGMIILILLSSHLQTPMYFFLSGLSFIDLGYSTVIIPKMLVNFVTEKNVISYPGCMTQLYCFIAFVLCECYMLSAMAFDRYVAICNPLRYNVTMSYQVCFWMIGGVYSIGFIEATIHTVCMLQVFFCKANVVNHFFCDLLPLFQLACSSTFVNETVLLCLSTLNFCVPTLTILSSYSFIIARIIRIKSTESRFKAFSTCSSHFSSVAVFFGSLGFVYFQPSSVSSKDQGKVSSVFYTIIVPMLNPLIYSLRNKDVKLALNKLFQKKIFHM", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K381-1", "protein_name": "Killer cell lectin-like receptor, subfamily A, member 4", "gene_name": "Klra4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQEVTYSTLRFHNSSGLQNQVKTNETQGPRETGHRGCSVSWHLIMIPLGILCSILLVTVAVLVTHIFQYSQEKHELQEALNKLHHNYSTMQNESYLNEEMLGNKSSECDAYKSVLDSLNRQQNTCLRLTNIVLDCLQHKGRQVNVHLFCCGIKCYYFIMDKKQWKECEQACQGCKLSLLTIDDEDELKFLQLQVTPDSYWIGLSYDNKKHDSAWIDNNPSKL", "length": 224 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K3S0-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c109", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNQSFVNEFILLGLSQNPQIKKISFVIFLLVYIATLVGNMMIVVTIAYSPALLGSPMYFFLAVLSFLDACVSSVVTPKMIVDMVYERKSISFECCMTQVFAVHFLTAVEVIVLAAMAYDRYVAICKPLHYSSIMNRRLCGTLVGVAWAGGFLHSIIQIAFTLPLPFCGPNVIDHFICDLFPLLKLACTDTHIFIILVFANSGSICIIIFSFLLISYGVILFALRAHSSEGRRKALSTCGSHITVVVFFFVPCILIYARPTSAFSFEKNVFVFTDVLTPLLNPMVYTFRNKEMINAIRKMWKRLIVVSDKY", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K622-1", "protein_name": "Histone RNA hairpin-binding protein", "gene_name": "Slbpl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLSSRMEMVSVGVTTEPCHARWEVETDEVVLRRRQKQIDYGKCTPGYQSFLQQVPRAQRQPGFHPQTPNKNRRYSRRSWDAQIRQWRRALHTWDPPSQPLHDRQAEGKAAGNFLRPVDTAPLDDLLDNWPQDPESSENWDRGEKEAQFAYLKVPASCPPQLKDELLHH", "length": 169 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K698-1", "protein_name": "Lamin tail domain containing 1", "gene_name": "Lmntd1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSHLASSHRVQKSSLARPERRAKSPSYTDISFWVPVMHRVGSQYQFESVCEQSSGYPGMPAQQVTPVPSQRGGILRKEEKTGTITPSKQHSSVHFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDSIPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQAEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQNVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTILCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKEKQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGSSLGTQPKPQSTKPKPDPGTKEKKSTR", "length": 467 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6E6-1", "protein_name": "Rho GTPase-activating protein 20-like", "gene_name": "LOC120093152", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDEELVRANKTCTCKTIFFYWATGNALATFRSEEQKVQWYTFLTSRSISEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHKIEDYQLWFSPGHKEAPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERRRKSCMTSCFHGGCVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTKSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAVASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQAEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKMFYGRDLSKKLSIIQFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKANTKELEMSSAVPHEGGPTAGHNGTTSKYNVPQEIILHD", "length": 835 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K6V9-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVVFFLGQGSYGRVRLAWHRRTQALVAIKTVEISKDTIRGILSEMTTLESLNHPNIISLYEVLITGTGVHFILQYAPGGNLGKLISEEGPLPEEKAKKMFGQVVSAIRYCHSLDIVHRDIKPQNILIDGEGNIKLIDFGQAIKCKPGTLLSRHCGTRDFNAPELVLREPYDGKSSDVWSLGVVLYFFTTGYLPFRGKTINDVEERITTGTYTIPTHLSGQLENLIHQILRVSPDMRPSVEEIENHPWIKKCEFKILPKTDPDYKIIEMLCAMGYKAKDILESLQKKRYDEPMGAYLSLKDHVSKGFDVGYITPAKPGDPCPPPPPSPAHPSVFGLPLRRRASEPIFGLHHRPPSREQNPLDLILSGLKMSRCVSMPPIAVYYPKKERSTSTRALHSTPVACPCVSNNMSEVEIILPPKQDIEMNTSSPPQRMGWFKRLRKGIRDCFSRLCCLPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2K894-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAHLLNVTEFIFLGLSPNKEGQRVCFVLFLLLYMAIVLGNLLMVVTVAASRNLGSPMYFFLSFLSFVEICYSSTTAPKLIFDLLAEKKSISVWGCMTQLFFMHFFGGTEIFLLTMMAYDRYVAICKPLHYTSIMNQQVCAVLVGSAWIGGFVHSFSQILLILPLSFCGPNVIDHYFCDLLPVLKLACSDTFLIGLLIVVNGGTLSVISFVVLLASYLVILFHLRTQSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRPSDTLPVDKMIAVFYTVITPLLNPLIYSLRNAEVKKAMKNLWFRIMKADEK", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KB39-1", "protein_name": "Myb/SANT DNA binding domain containing 5 like 1", "gene_name": "Msantd5l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQREANQGESLENTEESNVGKSVKEEEQRPSGRSRSSWTDSEIRVFLQEWEVVEQEMGQPGRKLHKKTKSLCQRLYQQGLKKSWKSCFHLLLSLQDLHRTLCNERPGIEPLFSPYSEALYRILGSTPHESWFPGPLYDEADDSMLPVYPQPPMYQPSDYGITVPSAQLQGNPVPMMCQEDSPFPTWEPWNPSYPLSVPHLLPGFAPGDPSLQQPWSMCDLHQDPQ", "length": 225 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KBC9-1", "protein_name": "Leukocyte immunoglobulin-like receptor subfamily B member 3-like", "gene_name": "Lilrb3l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTFTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVSMGTKVTFVCEETIGVKESHLYRNGNLQRTVLKNHQKPTNKTEFSFSNVDQQMQQYQCSYRTQTKSSDYSEPLELVVTGAYSKPSLSAQTNPVVTSGGYVTLKCEPSQDNHTLILTVEGSQKHSWRKDPECNRYTEKCHALFYVGPLTSNQRWIFRCYSYEKHTPQVWSAPSEPVELLVSGKLQKTTIKAEPGSVIRSGRAMTIWCQGDLDAEIYFLHKEGSHNTQSTQTLQQPGNKAKFLIPSVTQRHAGQYRCYCYSSAGWSEPSDTLELVVTGIYYYGVKLSGLPSPVVPEGGNVTLHCTSHSNYDKFILTKEDQKFTSSLDAEYIPSTGQHQALFVMGPMTPNYSGTFRCYGYYKHTPQLWSVPSELLKIFISGPSRKPSLLSHQGHILEPGMSLTLQCYSDTKYDKFALYKEGGTDIIESFSQWTKAGLSMTNFTLSVMPNSTVHSGENVTLMCWSTYSVDTFILSKEGSGQPPLRLKSKIQDQQYQSEFSMSGVTSKLSGTYRCYGSHDSSLYLKALIGVSVAFLLFLFILIFILLRRRHQEKFRKDDEDAQKGKELQLSTGAAEPVTRDRGHQKRSNPAAATQEESLYASVEDMETKDGVELDTWKPPEGDPQGETYAQVEPSRLRRAGAISPVVSREQLNTKYEQAEEGQEVDSQATESEEPQDVTYAQLCSRTLRQGTAAPPLSQAGEAPEEPSVYAALATARPGAVPKNKKQ", "length": 761 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A0G2KIH5-1", "protein_name": "Major histocompatibility complex class I LLA precursor", "gene_name": "mhc1lla", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTGKVLFVLFLLSAPTTVLTDSHSLWLLGTYIKGETQFPKLSFTVMLDDLRVGFYNSETKEFIPRDNTTNEDEAVSDVLTVIQNTLEPFMMSTLTFKNGTESPQLFQITWHCELLDNDKPGQIIFKIAFSGSTTDEVSFYNDNFTCQCQNNMATVPLESFQMHYETVCYPNCIATIRDYLKKRQTQVNGKVQPKVRLIKKVHPKSGGFRLSCLATEFYPHSINLTLLRDGQPVSDHEVTGGNLLPNGDGTYQMRKSLEIRADEREKHKYTCSVSHLSLDKILDIDFEFDPSFLIKIVIPVVVLLSLMLVLTAVLIHKCKNKRAESKETITTASTPEPTEMSETLRK", "length": 346 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IEQ0-1", "protein_name": "Guanine nucleotide-binding protein subunit alpha", "gene_name": "gna11a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTLESMMACCMSEEAKESKRINAEIDKQLRRDKRDARRELKLLLLGESGKSTFIKQMRIIHGTGYTDEDKRGYTKLVYQNIFTSMQAMIRATEHLKIPFRFEDNKKNALLVREVDVEKVCSFEQPYVAAINKLWMDPGIQEAYDRRREYQLSDSTKYYLNDLERISSRGYMPTQQDVLRVRVPTTGIIEYPFDLENIIFSYLSDLERISDPSYLPTQQDVLRVRIPTTGIIEYPFDLQSIIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKILCSHLVDYFPEFDGPQNDAQSAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQHNLKEYNLV", "length": 400 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4ILG2-1", "protein_name": "FXYD domain-containing ion transport regulator", "gene_name": "fxyd2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGVESPEHSDADFTYDYELIRRGGLIFAAVLFCLGMVIIFSKKLRCGKSSATHEDNGDL", "length": 59 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IU63-1", "protein_name": "Metabotropic glutamate receptor 5", "gene_name": "grm1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMLILRMNFFIVFLLFCTRLHLSTERSAVSRAASRSVARMDGDIIIGALFSVHHQPSAEKVAERKCGEIREQYGIQRVEAMFYTLDRINSDPYLLPNITLGCEIRDSCWHSSVALEQSIEFIRDSLISIRDEREGPKWCVEGNPSAQPPATKKPIAGVIGPGSSSVAIQVQNLLQLFNIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARALLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELASQEGLCIAHSDKIYSNAGEKHFDRLLRKLRERLPKARVVVCFCEGMTVRGLLMAMRRLGVAGEFLLIGSDGWADRDEVVEGYEEEAVGGITVKLQTEEVTSFNDYFLKLRLATNNRNPWFAEFWQHRFQCRLAGHPQENTNYRKNCSGYESLEDNYVQDSKMGFVINAIYAMAHGLHDMHEHLCPGHVGLCEEMDPIDGSKLLDFLLKTSFAGVSGEDVWFDENGDSPGRYDIMNLQYVEPGVFDYINVGSWHEGILSIDDYMIQMNRSEMVRSVCSEPCSKGEIKVIRKGEVSCCWICTPCKDNEYVQDEFTCKACELGWWPDEELQVCEPLPLRYLEWSHPESIAAVVFSCLGILVTSFVTLVFILYRDTPVVKSSSRELCYIILAGIFLGYICPFTLIARPSIASCYLQRLLVGLSASMCYSALVTKTNRIARILAGSKKKICTRKPRFMSAWAQVVIAFILISMQLTLEVTLIILEPPEPIKSYPSIREVFLICNTSNMGMVAPLGYNGLLILSCTYYAFKTRNVPANFNEAKYIAFTMYTTCIIWLAFVPIYFGSNYKIITTSFSVSLSVTVALGCMFTPKMYIIIAKPERNVRSAFTTSDVVRMHVGDGKIACRSNSLLNMFKRKKNASGNANSNGKSVSWSEPGSRHPPKGEHMWHRLSVHVKKQEAGSNQTAIIKPLTNTYNNPGMEFSDLSTKTLYNVAEEDEIDPIRYNPSNSPHLMAPVSKPMKEVGANLTFYTPEQHVPQQNSVLPQHAMIEHFQDDVVKYNSNMADLDEIISLPEPTDGIILALQPQVLHPHPILPMNVYQDEPSSPLEEVENEQFGLLHGYMYDNAQIHDEEELVQIKMAMEDSMALMPPSPFRDSLGSGSPVRNSPVSESVLCTPPSVTYASVILRDYKQSSSTL", "length": 1158 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4IUN8-1", "protein_name": "Trypsin inhibitor ClTI-1-like precursor", "gene_name": "spink2.9", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLAQIVLLLCLSVMATAADKCPSVPNCSRYHPHACTMEYWPVCGSDGNTYGNECELCATIFEEKLNIILISKKGEC", "length": 76 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A0R4J2B9-1", "protein_name": "BTB domain containing 35, family member 23", "gene_name": "Btbd35f23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPVSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFTNILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQKCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICNLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNQEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A140T8Q5-1", "protein_name": "BTB domain containing 35, family member 21", "gene_name": "Btbd35f21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMILYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GQX3-1", "protein_name": "Cortexin domain containing 2", "gene_name": "Ctxnd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCVLMEDSSMSNGIDVDKGFAIAFVVLVFVFLIVMVFRCVKLVKNPYEVSSTTADLPLN", "length": 59 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GRH6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 3", "gene_name": "Zscan4-ps3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVRQFPHGARRASQGTPSHHVDIQSPPTTADVTMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGFPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCKSHQKRFCRDAKLYKCEECSRMFKHARSLSSHQKTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GS00-1", "protein_name": "Predicted gene, 36210", "gene_name": "Gm36210", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHPGSPAAPGVSEPGPRELCAFVSGASAHMLRALQPRRIRPSKRRPNHRRFLHNQICREFAKIEAATQHLALTILSQKAPAQRPPFRRPPPPPPSPFLGVACAEAPMEAPHGSPSLSPVALDTSTLDLFDDILLTPTPRPLVTPDSFCQTLPAGNPQVASDVISHALGPGDQGQPTPIQAPRFSNLLLPPQKAQGGSLEPAALGCGWVDSWEAPYACDPQGVLDSWGAL", "length": 229 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSB3-1", "protein_name": "Family with sequence similarity 236, member D", "gene_name": "Fam236d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATEGVATAHTMLTSRGPRDTREPAPPTRSWRSRFQRALARVSKFFRRGRRTARG", "length": 72 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1B0GSI2-1", "protein_name": "Family with sequence similarity 236, member C", "gene_name": "Fam236c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVMHLVGHPQLTGTEGVATAHTKENSSRGPRETREPAPCTRSWRSRFQRAVARVSKFFRRRRRST", "length": 66 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYU6-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 2", "gene_name": "Zscan4-ps2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQYATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEGNVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSVPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1C7CYV3-1", "protein_name": "Zinc finger and SCAN domain containing 4, pseudogene 1", "gene_name": "Zscan4-ps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWAIQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYTLTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNTSCNATEGNVGERCGGNEMDSLLIIQKEQHPEHEEGNVVCRFPHGARRASQGNSSHHVDFRSALTPADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSSDNIPRKKTDSLSINKRIYHPEPEVGDIPYGVPHDSTRASQGTSTCLQESLGECFSEKDPREVPGLESRQEEPISDPVLLGKNHEANLPCESHHKRFRRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCFTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1D5P3Y4-1", "protein_name": "Large ribosomal subunit protein uL24m", "gene_name": "MRPL24", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MRLSALLRLAAPPKLPKGYRHGTWRPGTAAERLRNPPGQRRKKIFVEPISREDWKVFRGDTVQVLTGKDAGKQGMVTQVVRARNWVVVEGLNTHYRYVNRDAKYSSTYIASEAPLLLNQISLVDPEDRKPTEVDWRYTEEGERVRVSLRTGRIIPLPLWQRRDGIVPEQWIDGPKDTSVDDALDKTYTPSLKTFEEEIMDAMGIVETRRAKKSYWY", "length": 216 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5PNZ8-1", "protein_name": "ODF3A protein", "gene_name": "LOC124417034", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPATKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A1D5RLF0-1", "protein_name": "F-box and WD-40 domain protein 27", "gene_name": "Fbxw27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METHLPSLPLMKIFSYLDAYSLLQVAQVNKNWNALASSDVLWRKLCQKRWLFCDMVTLQLQDKETWKQFFVYRTWQEHSKTRANPRDFTYKEIPLQYGPCGYACYISGCGITRKGQDKSVVCMVNSKNTISTWDVHKSVITWVSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNILESPCKSLKAVITKDDPIVLVSDILGNLYIFRIPDLHLISTVNVLPCDIDEIYCSPQKKWVLLSKKQPYILPKVFYMSSLLRTSEFSAPVSTLLEISLCQEAFWTPRREDRLTLMSRSGCSKITKFETYDMKLEEFGNKIIVKGNSIAGFLLPYYTESLNWFGVSDKDTIVCSTEFSLLLFTNNGHRLQTFQYFSETIVRLSVDPVHVIVTCNDGSLDVYAWEERSLLLRKCYRLKNRRHLSPRGFINKTLCDDVSIIQLMIDGHDTWFLMAYALNICS", "length": 466 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1P8ASP4-1", "protein_name": "Serine/threonine-protein kinase PRP4 homolog", "gene_name": "PRP4KB", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVSDKHVESNHRKHRRSFSPSDEVFKSPKRHKSRHHHRRHGHRHHRDEEVQYNDDENVNGGDLDMEEGEILGKEGIGETLKKKLESVDEFGDIKSGQFRENNLAFNGDDGFPLICKSWIRVYNYLSYKCHGRNQRRERECEKRKEIEPDRERRKERGSVDRDSRGDREKDYLRDRDNDRGRSRDKARYSSRERGRENERERRSEKDRDKGREFQSDREKHKSLDDGYGEVRHKHSGHSRHDAEDDLELRSPTSVNGHDPNSGDVKETRGNVERTRIDNDDKGDVVVWEVEQEDEELNLIEESRRRTQAIMEKYKKKLEQQNGFSSHDLELANIPKQSSTVADVLGSGTLGPVTSAVNQAKAGLDIDAVDGEVAKLSSAVGESPAQLVISDSDRTLASTGLGEGSPKDKISDDMFTDDIFGESPADSQKMVCTLTQIIDLVFIEFSNSGFICFVFPVHHLTRYSRNGLPFVHYIFVGYLRGKGNGIPIVRSGLDDNWDDAEGYYSYQLGELLDDRYEIMATHGKGVFSTVVRAKDTKAELGEPEEVAIKIIRNNETMHKAGQTEIQILKKLAGSDPENKRHCVRFLSTFKYRNHLCLVFESLHLNLREIVKKYGRNIGIQLSGVRVYATQLFISLKHLKNCGVLHCDIKPDNMLVNEGRNTLKLCDFGSAMFAGTNEVTPYLVSRFYRAPEIILGLPYDHPLDIWSVGCCLYELFSGKIMFPGSTNNEMLRLHMELKGAFPKKMLRKGAFIDQHFDKDLCFYATEEDSVTRKTTKRMMVNIKPKEFGSVIKQRYKDEDSKLLVHFRDLLDRIFILDPQKRITVSQALAHPFITGK", "length": 834 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1P8BFV1-1", "protein_name": "Bax inhibitor-1 family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGLKDFSRISPAIQSHLMRVYFSLFCILAASAFGAYLHMRLNIGGTITKLGWVLSLLEHVVSCPPYKHKIRFSLLLLFGVLHGASVGPCIKSTIDIDSSILITAFLGTAVIFFCFSAVAMLARRREYIYLGGLLSSGFSLLTWLKNSDQFASATVEIQMYLGLLLFVGCIVVNTQEIIEKAHCGDMDYAVHSLILYIGFVRVFLQILSIMWNTSADRIRRNNEET", "length": 226 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "A0A1W2P6Q8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7S8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKMRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSEFTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLIGGLNTPLHESDFSGVTPQQQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLHINPEDGMADHSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQATRDAERVKEMKRMHKAVQKDLPRPSEVNETILRPFDVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGFATNDSEHITYLEHSPYEKFSKEDLKKAQDALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLYLPAQSCYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKHEDSAIPRRLECLEEDVQRQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P7Z8-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2P855-1", "protein_name": "Cell division cycle 5-like protein", "gene_name": "Cdc5lrt8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRIMIKGGVWRNTEDEILKAAIMKYRKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDRTAQRDNEEETTDDPRKLKPGEIDPNPETKPARPDPIDMDEDELEMLSEARARLANTQGKKAKRKAREKQLEEARRLAALQKRRELRAAGIEIQKKRKRKRGVDYNAEIPFEKKPALGFYDTSEENYQALDADFRKLRQQDLDGELRSEKEGRDRKTDKQRLKRKKESDLPSAILQTSGVSELTKKRSKLVLPAPQISDAELQEVVKVGQASEVARQTAEESGITNSASSTLLSEYNVTNNSIALRTPRTPAPQDRILQEAQNLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPLRTPSNGAEGLTPRSGTTPKPVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGFLGLPAPKNDFEIVLPENAEKELEEREIDDTYIEDAADVDARKQAIRDAERVKEVKRMHKAVQKDLPRPSEVNETILRPFNVEPPLTDLQKSEELIKKEMITMLHYDLLHHPYEPSGNKKGKNVGLATNDSEHITYLEHSPYEKFSKEDLKKAQGALVQEMEVVKQGMSHGELSSEAYNQVWEECYSQVLSLIAQSRYTRANLASKKDRIESLEKRLEINRGHMTTEAKRAAKMEKKMKILLGGYQSRAMGLMKQLNDLWDQIEQAHLELRTFEELKKREDSAIPRRLECLKEDVQLQQEREKELQQRYADLLMEKETLQAKF", "length": 802 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1W2PP81-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 5", "gene_name": "TAF11L5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A1Y7VLT7-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A1Y7VNG9-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRHRGKNENESEKRELVFKEYGQEYAQVTKMLGCLWLEAMCFDGVKRLCHIRGKLRKKVWISTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINETDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YCH8-1", "protein_name": "Predicted gene, 47985", "gene_name": "Gm47985", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGAPHNSAKRHRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPIVLQRAWLTWQLSHAGAALHWALHTVKSILTSQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YD13-1", "protein_name": "Predicted gene 8947", "gene_name": "Gm8947", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKREQLLDKKAEDKQPPESRCNNGRSSKSSPMGKENTWPSREAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDQRSQPRSPVRTLKRSRSGDRQGAPHNYAKRRRQTFPPEASCSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYIWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 301 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286YE43-1", "protein_name": "Predicted gene, 47996", "gene_name": "Gm47996", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALGAELSETLVEKPEHMNLEMSILAPSKRKQLLDKKAEDKQPPESRGNNGRSSKSSPMGKDNTWPSPEAKVPSQKRSGQSWAVSSCGPHKRSSKLEDKRRNRPSRFRERGRDKPGSTHKRDSSHTKLHVKDRRSQPRSPVRTLKRSRSGDRQGVPHNSAKRCRQTSPPEASSLPTFSLLMSRVFTNVDALQVSLDDLQAPGGAFLRVPSSSTEPSVSQRAWLTWQLSHAGAALHWALHTVNSILTAQASLPRYTWPQGYSFTADPRPVPTSKIQASQLAQRPGDLASPNPSVDTRSILG", "length": 300 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A286ZIN6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258935", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANLTSMSGFLLMGFSDDHKLQILHALLFLVIYLLALTGHLLIITITTLDHHLHSPMYYFLKHLSLLDLCFISVTVPQSIANSLMNNGYISLGQCILQVFFFIALASSEVAILTVMSYDRYVATCQPLQYETIMDPWACRQAVIAVWVTGGLSGLTHTAINLSVPLCGDRVIHQFFCDVPQMLKLACSYEFINEIAVAAFTTSTAFFCLISILLSYTRIFSAVLRIPSAQGRTKVFSTCLPHLLVVTFFLSAAGFEFLRPPSDSQSAMDFMFSIFYTVVPLTLNPVIYSLRNKAMKAALRKVLSKEEFAQRKKYFKALFQL", "length": 321 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZIP8-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259124", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "QEYKANGGDNTTTIIHFVLLGFSDFPHIRPALFVVFLVIYILTLTWNLCLIVLIRLDSHLHTPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECCLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVQVLTAIFTVFFGIINALVIMMSYVYIVISVMKITSAKGRSKAFNTCASHLTAVTLFYTSGIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 316 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZLI4-1", "protein_name": "C-C motif chemokine ligand 24", "gene_name": "CCL24", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFSPSSLIKASGQLQCPAGNRLLAPTLSSCIAALSPELPLLLSRHGRPVTVAASLLFLGLCAYSFAPADSVTMPSSCCIYFISKKIPESRVASYQLSNSSVCPQAGVIFTTRKGQKFCGDPKQLWVQKYMKKLDAKRKKASTRIRAMGTGAPVRRGPANSTSI", "length": 163 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZSE3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258059", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPKLQVLIFIFLFVAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEISFISSCIPRYLYSIATGDKVITYNACVIQVCFTDLCGVTEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSVQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZU87-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100152920", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILETMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDHYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSTVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSWRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZVC9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258401", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZWC4-1", "protein_name": "Zinc finger protein 16", "gene_name": "ZNF16", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLPLSQVPAMPSLRTRPGKAEMEPSVPGPSLRTPGTQVSVSDAPAVTHPGSALHGPLSCGDTEPGATPPHHQLADWDLRTEGSQLLQKEDASEDLESQAGTSEDYVGAGSQAPERGELCADVLGSDWGVPQGERLSLCQEGGFMPAYLLPGSPLEEPEIDTEPLERNFGLIITPVASPGEPEEETPQPFDACDQSVHCGVDLAGHEGLHAAESSFICGECGESVGLHSDLLRHRLSHRGEKPHVCAECGEAFSQSASLESHQRSHEPAKPFQCSTCGKAFGRSSSLIKHHKVHTRERPHACGECGRPFSRFSNLVKHRRVHTGEKPYRCSECGKAFSQSSSLLQHRRVHTGEKPHVCPVCGKAFSYSSVLRKHQIIHTGVKPYSCSACGKAFSHSSALIQHQGVHSGDKPYECRECGKTFGRSSNLILHQRVHTGEKPYECAECGKTFSQSSTLIQHQRIHNGLKPHECDQCGKAFNRSSNLIHHQKVHTGEKPYTCVECGKGFSQSSHLIQHQIIHTGERPYKCGECGKAFSQRSVLTQHQRVHTGEKPYDCEACGKAFSQRSKLVKHQLIHARE", "length": 576 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZX75-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100156955", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "IFIMEWENQTASSDFILMGIFSHTPTHIFLFSLVLGIFTVALLANTVMVLLICLDRRLHTPMYFLLSQLSLMDLMLICTTVPKMARNYLSGRKSISVAGCETQIFFSVSLFGAECFLLAVMAYDRYAAICYPLQYPQLMNWNVCGLLAASSWILGVFDGIVDIAATLSFSYCGSREIPQFFCDITALLRLSCTDTSTFETLVFICCVVMLLFPLSLIIISYTRVIITVIRMSSGEGRHKAFTTCSSHLVVVGMYYGAAMFIYMRPTSNRSPAQDKMVSAFYTILTPMLNPLIYSLRNKDVAKAFSRCWGREI", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZY56-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258501", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "METDNDTQILEFLLLGFSKQPESQPIIFGLFCSMYLITVFGNLLIILAVISDYHLHIPMYFFLSKLSFVDICFTSTTIPKMLWNIQTQSKAITYEGCITQIYFLILFAVLDILLLTVMAYDRFVAICHPLHYTVIMNPRLCGLLVLVPWIMSVLNSLLQTLMMMQLSFCTNFEIPHFFCELNQMIQLACSDTFLNTIVMYFAAALLCGGPFFGILCSYSKIVSSIYRISSAQGKYKAFSTCASHLSVVSLFYCTMLGVYLSSAAAHSSHSSATASVMYTVITPMLNPFIYSLRNKDMKRALKALFVKGPM", "length": 310 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A286ZZP6-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MANAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHLPNYH", "length": 402 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7E2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258743", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNSTSLHDFILLGFSDHPKLEMALSGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFPDLCFTTSIVPQMLVNLWGPHKTISYGGCVIQLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKVACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSRAGQRKAINTCGSHLTVVSIFYGAIIYMYLQPGNNASRGQVIFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 320 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A7J9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258750", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVKEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLAFVDLCYATAITPKVLQNLMSTEKSISFIGCMVQLFVYGTFVTSDGYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSCFMGFLNACVNGSLTFQLNFCKSNKINHFFCDAPPILALSCSSIYFNIMLLAAFVGFNLMFTVSIIIFSYIFILAAILKISSAAGRKKAFSTCGSHLTAVTIFHGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMLNPLIYSLRNQDVREALKEIGKKML", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287A951-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "LOC100514137", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVHMNVLTDALESINNSEKRGKRQVLTRLCFKVIVRFLTVMMKHGTPIGKFEIMDDPRARKIVVNLTGRLNKCGVISPRFDGQLKDLEKWQNKLLPSCQFGFIVLTTSAGIMHHEEAR", "length": 118 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ACV2-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDAPTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLIKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEDSAWNKLQFYHNPNFKRGCPNLLVRMKRRVRVKNASPVSASLLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSTSTNLNVPLIRWPSMSQRISNTTTPTRSGLSSPSSPSVRPPGQIVMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYHRISNFPSGYFGLRVEPSPLPTRYQNISPTEGPVSNPQPAAHPWFPMPMATDTSVASLSRPNPQSSSISEHHPNYY", "length": 402 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AEV7-1", "protein_name": "Uncharacterized protein", "gene_name": "WFDC10AL", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKWWGLQWLMLSCLAILPASGNWQERISASLEALTQSKLIPGMKPCKTIPTKEQCTYFCDLPRACPTGLLCCSASCGNVCMPPKGHGNRRSSHKISNFLFTAEPIKQQ", "length": 108 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AF12-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTNTKGKRRGTRSMSSSPFRKHGVVPLATYMRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRVYNVTQHAVGTVVNKQVKGTILAKRINVHIVHIKHSKRGDNFLKRVKENDQKKKEAKEKVTWVQLKHQTAPAREAHFVRTNGKEPELLEPNP", "length": 155 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AGK9-1", "protein_name": "DM domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDPDEMPTVPCCPLDSTTGLETGAPWGIEFGPRRAIRRCARCHNHGITDQIKDQEHLCLFQACECHKCVLFSEHCSILPAESALKTMQELHLKRQLTQGLIKSGTTSPKAHSHVKKSSIQTGVLSKLPRCSADRSGIGIFVSVLDSSTLEEATNNFTFQEVTQAPCPAQQAPKTSDQDSDSASLEWQRKLEAAEALLTLRESSQAPSGPTPLLQPSAAPAPAGERGLQPPSRSLRPRPASSISLPIGHVGCISLLS", "length": 256 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AKK8-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100155397", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDVRNHSIVSEFVFLGFTNSWEIQLLLFVFSFLFYSSSMMGNLVIVFTVTLDSHLHSPMYFLLANLPAIDMVFCSITAPKMIGNIFKKHKAISFCGCITQIFFTHAAGGTEMVLLIAMAFDRYVAKCRPHHYLTIINPRICLCFLVTSWIIGLIHSMAQLFFVVDLPFCDLNVLDSFYCDLPRLLRLACTDTQELQFMVTVNSGLLSMGSFVLLIISYIFILFTIWKHASGGSSKALSTLSAHITMVVLYFGPLIFFYTWPSPTSHLDKYLAIFDAFITPFLNPVIYTLRNKEMKVAMRRLFSHLVHYRNIS", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AP00-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258730", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "SRHDLHCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLTGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCDHLAMVSWGVGCMAALGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSMPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTVVTSMLNPIIYSLRNKDVKAALRRTLGKKKVLAHR", "length": 322 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287ARD5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258934", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLTFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLFYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AT12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLSFNRTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQFFIIHCIFMSESGILLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIFLRSYCTVFPIIFLLKRLTFCRNNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDILLIFVSYMLILRAVFHMPSQDARHKALSTCGSHVCIIILFYGPGILTTLAQRFGRHIPAHIHILLANVCVLAPPMLNPIIYGIKTKQIQEQVAHLFLKQK", "length": 313 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AUC4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MERINKSHPEEFILLGFADRPWLELPLFIILPMYFFLTNLSFLDMCYTTSIVPQMLFHLGGSEKTISYLGCAVQLYFFHTMGGTECLLLALMSFDHYVAICKPLHYTLIMNRCTCILLVATVWLSGMTYAVSEATVTLHLPLCGHNTLDHLICEIPVLIKAPCGEKGTNELTLSVVCIFMLAVPLCFILASYASIGHAVFKIKSSEGRKKAFGTCSSHLIVVFFFYGPDISMYLQPPSSISRDLPKFMALFHGVVTPTLNPFIYTLRNKDVKGAWGNLVRSVFTSK", "length": 286 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AXC2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTEVNEFILLGFAGQHKSWLVLFIVFLGIYVVTLVGNIGMILLIKIEMLQNFVGTEQSISFIGCMVQLLIYGAFVTSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLLIGSYLIGFLNASVHVSFILPLNFCKSNKINHFFCDAPPILALSCSSIYFNVMLLAAFVGFNLTCTVLVVIFSYIFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 281 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287AY25-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100155405", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLSNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSRRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDRFFCNLPLVIELACMDTYKVEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRLSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNHHVNSWKY", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B1Z6-1", "protein_name": "Short stature homeobox", "gene_name": "SHOX", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEELTAFVSKSFDQKSKESSGGGGGGGGKKDSITYREVLESGLARSRELGGSDSNLQDITEGSGHCPVHLFKDHVDNDKDKLKEFGTGRAAEGIYDCKDKREDVKSEDEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQMHKGVILGTASHLDACRVAPYVNMGALRMPFQQVQAQLQLEGVAHAHPHLHPHLAAHAPYLMFPPPPFGLPIASLAESASAAAVVAAAAKSNSKNSSIADLRLKARKHAEALGL", "length": 292 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287B9C9-1", "protein_name": "HSF-type DNA-binding domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHAPSEIQGVSPKDESTGSESSITSPWCDNSITGDLDLRSQIEEKAFQALSEGSLMKEPCHTLCASEPDGDNDFPPLPFPRKLWEIVESDRFKSIWWDENGTSIVINEERFKKEVLERKAPFRIFETESMKSLVRQLNLYGFTKLRRNFQRPASLANILAEDNEVSAWNKLQFYHNPNFKRGCPHLLVRMKRRVRVKNASPVSASVLQGCSKKRSRTGGDVDNHNSDVAAETRGEDAFSASTNLNVPLIRWRSMSQRISNTTTPTRSGLSSPSSPSFRPPGQIAMAQHAIFSQLTTFHMHSQSSYSPASGHIVNFITTTTSISQYRCISYFPSGYFGLRVEPSPLPTRYQNISPTECPVSNPQPAAHPWFPMPMATDTSAASLSRPNPQSSSVSEHHPNYH", "length": 402 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BB76-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100157512", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAHTNESVVLEFVLLGLTNSWELQLFLFAIFSIVYVTSVLGNTMIIVIIASDSRLNSPMYFLLGNLSFIDICQSNFATPKMLVDFLVEHKTISFEGCMAQIFLLHSFVGSEMMLLVAMAYDRFIAICKPLHYSTIMSHRLCIIFVFISWAVGILHSVSHLAFTVDLPFCGPNEVDSFFCDLPLVIELACMDTYKIEILTLTNSGLISLGCFLALIISYTVILITVHRWSSSGSSKALSTLTAHITVVILFFGPCIYFYIWPFSRHSVDKFLSVFYTVCTPLLNPIIYSLRNEDVQSAMHKWRNRHVNSWKY", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BC21-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152520", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDGKNQTALSEFIILGFSNLNQLQFLLFTIFFLTYICTLGGNTFIILVTVVDPRLHTPMYHFLGNLAFLDICYTTTNVPQMMAHLLSEKKSISYGGCMAQLFAFIFFVGSECLLLAAMAYDRYVAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSAIFTYVRPISSYSLEKDRLISVLYSVVTPMLNPIIYTLRNKDIKEAMKAVGRKWQLPLLSFDV", "length": 317 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BF45-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100513333", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNRTITTFILLGLTDDPELQVLIFIFLFLAYMLSLTGNLTIITLTFVDSHLKTPMYFFLKNFSFLEVSFISSCIPRYLYSIATGDKIITYNACFIQVCFTDLCGITEFFLLAAMSYDRYVAICKPLHYVTIMSSRVCGILISSCWMAGLCVLIPPLSLGLNLKFCDSNRLDHFGCDAFPLVKISCSDTWPMEQTVIICAVLTLNMTLTCVVLSYAYIIKTIFRFPSDQQRKKAFSTCSSHMIVVSITYGTCIFIYMNPTAKGEVTIKKVVSLLIFSVSPTLNPFIYTLRNNQVKRAFKDSIKRIALLSTR", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BGE2-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENNQSWIAEFILVGFQLSEEMELFFFIIFFLLYIFNLLANGMILGLICLDPRLHSPMYYFLTHLAVTDISYASSNLPNMLENLVKHKKTIPFVSCTLQMLFYLAFASVECLILVVMSYDRYVAICHPLQYTVIMNWKLCTVLAIISWACGFFLALVQVSLFLRLPFCGPQKVNHFFCEIRSVLKVTCGETWINKIFLFADGVFILVTPISLMLVSYVRILWAILKIQSKEGRKKAFSTCSSHLCVVGFYFGIAMMVYLVPDDSHQQEEQQKILFLFYTFFNPLLNPLVYSLRNAQVKAAFHRIFQKNRTM", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BIM6-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGKRSRRKSPGRQGRTCARTTRAGLSASVSHMERLLREGPYAQCLSSSARVFLAATIEYLTARVLELAGDEAQIVGRRCITPELVAMAVHNNALLSAFFGTLAISQVAPTQE", "length": 113 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BK27-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVTEFIFLGLSNSQELQTFLFVFFLVFYVGIVFGNLLIVLTVMIADFFRKCKVISFKGCLAQIFLLHFFGGSELVILIAMAFDRYVAICKPLRYTTIMSSNVCVGIVAAAWGTGFLHSVSQLAFAVNLTFCGPNEVDSFYCDLPRVIKLSCTDTYRLDIMVIANSGVLTVCSFVLLIISYTVILVTIQHLPSQKSSKALSTLTAHITVVLLFFGPCIFIYAWPFPIKSLDKFLAVFYSVVTPLLNPIIYTLRNKDMKTAMKRLRKWNMNSRIKP", "length": 274 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKA6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259008", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTFNCSLWQDNSMSVKRFAFARFSEVTEQCFLLFTLILLMFLASLMGNALIATAIWTNPVLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEARGISREGCATQMFFFAFFGISECCLLAAMAFDRYMAICSPLHYATRMSRGVCVHLAMVSWGVGCMVGLGQTNYIFSLDFCGPCEIDHFFCDLPPILALACGDTSHNEAAVFVAATLCISSPFLLIIASYGRILAAVLSIPSPEGRRKALSTCSSHLLVVTLFYGSASVTYLRPKASHSPGIDKLLALSYTMVTSMLNPIIYSLRNKEVKVALRRTVGKKKVLAHR", "length": 320 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BKW4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258932", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEGENQTVLFEFIILGFSNLKELQFLLFTIFLVTYICTLGGNSFIILVTMTNLHLHTPMYFFLENLAFLDICYTTTNVPQMMAHLLSEKKSISYLGCMAQLFAFIFFVGSESLLLAAMAYDRYIAICKPLRYSVIMNKVLYSQLAASCWSGGFLNSAVHTVLAFRLPFCGNNQINYFFCDIPPLLVLSCGDTSVNELALLSIGVVIGWTPFLCIVLSYLYIISTILRIRSSKGRQKAFSTCASHLTIVLLYYGSTIFTYGRPISTYSLEKDRLISVLYSIVTPMLNPIIYSLRNKDIQEAMQVMGRKWKASSSLSFDV", "length": 318 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BLZ6-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC110258167", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGGKNSTTITKFILLGFSEFPKLTAVLFSVFLRISLMTVSWNMGLIMLIRMDSHLHTPMYFFLSNLSLLDICYVSTIAPRMLSDFFKKYKFISFMGCTMQYFFSSLALTECCLLAAMAYDHYAAICNPLLYTAIMSPTLCVQMVAGSCVTGFFGSFIQLCALFQLHFCGQNVTNHFFCDLPQLLILSCSDTFFFQVMTSVLTVIFGLTSVLVIIISYGYIIATILKITSSEGRSKAFNTRASHLTAVTLFFGSGIFIYMYPNSGDSLSQNKLVSVLYTVIISMLDPLIYSLRNKEIQDSLSRWRKTIFSWCY", "length": 313 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BNL4-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "TVLNARNVSTPKVFILLGFSDHPWLEMPLFIIVLAAYIRTLVGNISIIVVSRVDPNLDSPMYFFLSNLSFLDLCFTTTTIPQLLLNLWGPDKSISYGGCVTQFYMFHFWGATECIFLAVMSMDLQAICKPLRYPVIMHQQLCIFLVVMAWLSGLVNSLLQSSLTIQLPLCGNNKVDDFLCEVPVMIKMSCTDTTFNVAMLSIVGTFYSLVPLSLILVSYGFIVATVLRIQSSEGKKKAFNTCSSHTIAVSLFYGPVISMYVQPSAANSQDKNKLMSLFYSLVTPMLNPFIYTLRNKDMKGAMMRLLVSLYHQRRG", "length": 315 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A287BSD4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100525471", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENENSTVVAEFIFVGLTQSRNIQLLVFVLILIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNLRACYALLVALWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLMTLLCFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPAIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKRLLNQQLA", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A2R8VHJ9-1", "protein_name": "Predicted gene, 36245", "gene_name": "Gm36245", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTKNEEQNEDQSEGVVIPHIQDHHCLAILAFCFFFPLGYLAYRSSCKTRTYIEQKEYEKAKATSRCTFAFVLSSIAGGSIIFFCLFSRLFFM", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A3L7ICH5-1", "protein_name": "Cytochrome c oxidase subunit 7A2-like, mitochondrial", "gene_name": "LOC100756118", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYYKFSGFTHKLAGAWALESYSPQGLKPVASTEAPPIVFATPTKLTSSVTAYVYAGKNKVPELQKFFQNFFHLKRGLPDQMLYRTPMALTVGGTIYCLSALYMASQTPNK", "length": 110 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A3Q1LL21-1", "protein_name": "BTB domain-containing protein", "gene_name": "LOC112445444", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGPLNSRNLQCRESGTGELQQPEAQAGPSYVSGSRKRKQSTGPSLGPESEMSHNQEEDLQQVVCTRQGKKVKIKSEYAYQTLFLNGETSDIKIRALGKVWCLHKRFLCQSDYFATMFRDSGKECHKDIIDLEINDQNINVESLQFVLGSLYRNEYVLIKPLQVPRVLATACLLQVEDLIQQCDKTMKETINVKTVCSFYVAAETYGLHSVKTGCFEWLLHNLMTHPSVELYKKLSTDLMNLVISSSNLFVMQKEIDIYTTLKQWMFLRLNPGWKGTMKQLLVNANNWFSRHKEHDGSISFLETKQGIVFQPVFKNLRFQHIICDLASTKVIEQDALIPSEWLSCVYKRQWYTLLRAQQYREIGPRDITETELEEYSMRCGKRIVRDGTYAWKWSGYNFGVHLYVVFTSHFIIFKRHAFSQPYDGSICLQPQRNIAFRLTLVYFGSSGKLSFRKTTGYKILTFEKDEEQMVMKLDSVALSFPLYIFCNFLFISLENPGN", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LLV6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIIIGTLITGYMVTCTCFLHYSCDSEEAHKATKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1LUU6-1", "protein_name": "Guanylyl cyclase domain containing 1", "gene_name": "GUCD1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTGPRCRRKQRPSGRPGPRGTRAPQHPTPDAGWTARRAAGAAGAEARGRDLPPQRKPAKPTAPGKGRPERGECPRRADRGGGDPEERAGGRPAWGPGAGRGGAWGRSRLPPLLPPGRWCWRPGKPARAGRALSSPVDARAAAGAGPGPWEPRAARVMRTEVDAEAAGPPLEPDEPTQSLSIQDQETAFLLEDSCQLKPGQPLPGRPWPSGDFVQLPVPIIQQLYHWDCGLACSRMVLRYLGQLDDAEFEQALQELRLTRSIWTIDLAYLMRRFGVRHRFCTQTLGVDKGYRSQSFYRKHFDTEETRVNQLFAQAKTCKVLVEKCRVSVQDIQAHLAQGHVAIVLVNSGVLRCDLCSSPPKYCCFTPSGPRCFCRSPDYQGHFIVLRGYSRAAGCVFYNNPAYADRMCSASISNFEEARTSYGTDEDILFVYADS", "length": 434 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1M0W3-1", "protein_name": "IF rod domain-containing protein", "gene_name": "LOC787600", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTCGSACFSSRSGVRSSSSCVTTQRYAPGRTFSCVSACGPRPSRCCITAAPYRGVSCYRGLTGGFSSRSVCGGSRAGSSSRSFGYRSGGPSPPCITSVSVNQSLLKPLNLEIDPNAQRIKHQEKEQIKSLNSKFAAFIDKVCFLEQQNKLLETKWKFYQNQRCCESNLEPLFNGYIETLRREAERVEADTGRLASELNSLQEVLQGYKKKYEEEVALKTTAENEFVKIKQEVNRAYVLKGDLEANAHSLVEEVGFLKTLYEEELRVMQAHISDTSVVVKMDNSRYLNMDSIVAEIKAHYDEIASRSRAEAESWYRSKYEEIKATVIRHGETLRRTKEEINELNRLIQRLTAEIENAKSQNSKLEAAVTQAEQQGEAALNDARGKLAGLEKTLQKAKQDMACLLKEYQEVMSAKLGLDIEIATYRRLLEGEEQRLCEGISAVNVRVSSSRGGVVCGDLSATRTCGIGSYGVGACGSSCKKC", "length": 480 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MFB0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112441459", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELWRRLLIIVIGTLITGYMVTCTCLLHYSCDSEEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKSTWPPSLQCRVKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVTLFSRELKHFYKSYKKKQPIYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDMFKNSQNN", "length": 361 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MI36-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGSSSGSKAEFIVGGKYKLVRKIRSGSFGDMYLAINITNGEEVAVKLESQKARHPQLLYESKLCKILQGEVGIPHIRWYGQQKDYNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMMGRIEYVHTKNFIHRDIKPDNFLMGIGRHCNKLFLIDFGLAKKYRDNRTRQHIPYREDKNLTGTARYASISAHLGIEQSRRDDMESLGYVLMYFNRTSLPWQGLKAATKKQKYEKISEKKMSTPVEVLCKGFPAEFAMYLNYCRGLRFEEAPDYMYLRHLFHILFRTLNHQYDYTSDWTMLKQKAAQQAASSSGQGQQAQTPTGF", "length": 325 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MQ28-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "KEQVLQPTTVVSLEGAVAEISCNHSVSDVYDFFWYLHFPGFAPRLLIKGLGPSQQGRYNMTYERFSSSLLILQVQTADAGVYYCALRYTEAGHP", "length": 94 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MT47-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC112444909", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLGCEGGKRPLKPPKKQAKETDEEGKAFKHKQKEEQKTLEGLKGQIMGKVPLATGGIKESGKQ", "length": 63 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q1MUP8-1", "protein_name": "E3 ubiquitin-protein ligase", "gene_name": "LOC100336539", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRLTERALPTGTSNGAPSSRRAPVLTGTTVSNNDLASLFECPVCFEYVLPPITQCKSGHLVCGNCRPKLTRCPTCRVPLTSIRNLAMEKVANLVLFPCKYTSSGCGKTMPPTEKADHEEHCEFRPCRCPCPGTSCGWQGSMDAVVPHLMQHYNESIITLRGEVVVFLAVNINLAGTLEWVMLQSCFGFHFLLVLEKLEIYDGHQKFFAVVQLIGTREQAENFTYQLELNGNRRRLSWEATPLSIHEGIATALINSDCLIFDSEVAELFAENGNLSIDVTISMC", "length": 284 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A3Q2TUK0-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC121109925", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDEKGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A3Q2UEY0-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418381", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSSYTIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A494C0N9-1", "protein_name": "Protein FAM246B", "gene_name": "FAM246B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATPGRPWAQARSAYRASEVLRRVTGRRRDPGPQSNGPGREDARAPGRLARLLRQLRAEAASRSEVPRLLKLVERAGAGAAGAGERTGAHSRGSVCSVCGEPRGRATYPAGVLEVSERRLQEGLAAVREELGAEIEALRAELRAELDALRALLPPPPPSPPARREPRAVPRAAPRGPTLLRTLGTVSALVAASRPADDAPDGPAECGAHRAPARKNHKKMPVPPGAPQGGGD", "length": 232 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A494C0Z2-1", "protein_name": "Speedy protein E13", "gene_name": "SPDYE13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A0A4X1TRA8-1", "protein_name": "Small ribosomal subunit protein eS19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPGVTVKDVNQQEVVRALAAFLRKSGKLKVPEWVDTVKLVKHKELAPYDENWFYTRAASTPRHLYLWGIAGVGSMTKTYRGHQRDRVMPSHFSRGSKSVAHRLLQAREGLKMVEKDQDGGRKLTPQGQRDLDRIAGQVAAAKKKH", "length": 145 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1TY10-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100627324", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MENYNQTSIYFILLGLFPSSRIGMFLFIIIVLIFLIALFGNFSMILLIFLDNNLHTPMYFLLSQLSLMDLTYISTIVPKMAYNFLFNDKSISFIGCGIQSFFFLTLAGAEGLLLAAMAYDRFVAICFPLHYHIRVSKRICVLMIIGSWIMGSINSFAHTAYALNIPYCQSRAINHFFCDVPAMLTLACIDTWVYESTVFVSTTIFLLVPFTCIAFSYGRILLVVHHMNSTEGKKKAYSTCSTHLTVITLYSAPFAYTYLRPKFLRTPTEDKVLAMLYTIFTPMLNPIIYSLRNKEVMGALRRVIQRICSVKM", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1U699-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSVSMSKFVLVGLHIWPEQQGMVFALFLGMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLAFSDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFFSCIDNLLLAVMAYDRYVAICHPLRYAIIMKEELCLCLLAGSWLLSCAYALTHTLLLAQLSFCADNIIPHFFCDLASLIKLSCSDTSLNELVIFSLGPAVFIFPLSGILVSYGCIVVSILSVHSPKGIFKALSTCGSHLSVVSLFYGTSMAVYLSSSSGQSHDKDTIASIMYTVVTPLLNPFIYSLRNRDMTLALQILFRNSNLLAK", "length": 315 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A4X1VK25-1", "protein_name": "Elongin-C", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RSYGGCEGPDASYGKLIASDKFIVKREHVLTSGAIKAMFSSPGQFAEKETDVVNFRETPSGIPSAALWKVCMYLPHKVCYTSNTSEIPEFPINSEFPIAPDIALEPLMAANLLDC", "length": 115 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A571BD55-1", "protein_name": "BTB domain containing 35, family member 26", "gene_name": "Btbd35f26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BF50-1", "protein_name": "WD repeat domain 88", "gene_name": "Wdr88", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTKDNEEILNSPDQVRKGSPDVKKKKKIKKKRVKPKGDLDSKKLDFVEDSWWKGSLKNKNLDFAEYNWVLVDNRRVSVDSRKSSADSKRGSADSKRGSADSKRGSADSKRGSADSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKRGSVDSKNRFSPKKMDFSEDREISQPTFLRAQQSKVPWALMRALGLFKLSLPDIRRYYNLTSHDPLALDKDRQPREKSHMATVKKFWGNQQPLSKIPYKILIGHDHIVSSCHFCMNDTRFLSSSYDCSVKLWDAEDGTVIWDFEPRPKAPVLECSITADNRRIVASSYDKTVRAWDVETGQLLWKVRHDTFVVCCKFSPNGKFVLSALDVDRGIYLMDPENITTVIHMKDHHQRSITSCCFDPDSQKVASVSMDRCIKIWDITSRTTLFTIPKAHYNAISDCCFTSTGHFLCTSSWDKNIKIWNVHTGEFRNRGACVTLMKGHEGCVSSCCIARDSSFLISGGFDKTVAIWDVGGGYRKLALKGHEDWVTDVAISNNKKWILSASKDSSMRLWNIEEIDKIPLVSENKKAMGLKVRQVGIR", "length": 565 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG45-1", "protein_name": "BTB domain containing 35, family member 25", "gene_name": "Btbd35f25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGLQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A571BG86-1", "protein_name": "BTB domain containing 35, family member 8", "gene_name": "Btbd35f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESRHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A5G2QG78-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100523228", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTRGENTTNITDFVLLGFSDFPQIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHTPMYFFLRNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYFVCSTMGLSECGLMTVMAYDRYAAICNPLLYSSTMSPSLCGRMVLGSYMAGLSASLSQVCAMLQLHFCGPNVIHHFFCDMPQLLVLSCSDTFFLQLLTLVLTVIFGILNALVIMMSYVYIVISVMKITSTKGWSKAFNTCASHLTAVTLFYTSIIFVYLSSSSGGSSGLDRFAAVFYTVVIPMLNPLIYSLRNKDIKDAWKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QIN7-1", "protein_name": "ADAM metallopeptidase domain 7", "gene_name": "ADAM7", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSNSHYLSALFSREFLASNYSETYYSTKGEEVTTHPQIMDHCFYQGSIIHEFDSAASISTCSGLRGFFRVNDQRYLIEPVKYSDEGEHLVFRYNPKVQHAANYSCTELNFTRTAVLKDNTKSMEDSKMESIEKEKHIELFIVADNNVYHRNPNSKVRNRVWGMVNFVNMIYKTLDIHVTLVGLETWTNGDKIEIDSNIETTLKRFSAWQEIILKKKKNFDHVVLLSGKWLYTSAQGTSYPGGMCLPYYSSSVVKDLLPDLNTIASRMAHQLGHSLGMKHDDYPCTCTLGKCVMDSGGSIPALKFSKCSRTQYQQYLKDFKPTCMFDIPFSDKLSDYPYCGNKKLDDGEECDCGPVQECTNPCCDARKCMLKPEFTCAEGECCESCQVKKAGSLCRPAKDECDFPETCTGHSPACPKDQFQVNGFPCKDAKGYCFMGNCPTRDDQCSELFDNEAKDSSDICYKMNKNGNKFGYCKNEEQTLIPCEEKDVKCGKIFCTGGKHASILGEEKVYHLKKPLTQNVTECKTFFLYHKSKDFGLVAPGTKCGEGKVCSNSECVTIEKAYNSTDCPSPCNENAVEDGDLGCQCEGVQASVDWEETLNVTNISILVVVLILVIIGVLSAVLLIRYQKCIKLKQVQRPPSEALGVENKGYTGDEQQTRTEPILPDIHPLHRRTAESLARLPTSFSSPHYITLKPASKEPRGTADPNPSAKVSLKLDIQNGCASLS", "length": 725 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QM02-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100623139", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTGGENTTNITAFVLLGFSDFPHIRAALFVVFLVIYILTLTWNLCLIVLIRMDSHLHIPMYFFLSNLSFIDICYVSSTAPKMLYDFFQAKPTITVVGCAIQYVVFSTMGLSECGLMTVMAYDRYAAICNPLLYSSIMSPSLCGRMVLGSYMAGLSATLSQVCAVLQLHFCGPNVIHHFFCDMPLMLGLSCSDTFFVRVLTAVFTVIFGIINALVIMMSYVYIVISIMKITSAKGWSKAFNTCASHLTAVTLFYTSGIFVNLNSSSGGSSGLDRFAAVFYTLVIPMLNPLIYSLRNKDIKDALKRLKKRKECC", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QUE5-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524011", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSNVSKFLLLGLPIQQEQQGMFFALFLGVYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFASVTVPKMLMNMQAQDHSISYAGCVTQTYFFMFFACIDNLLLTVMAYDRYVAICHPLRYTIIMREELCICLLAGCWLLSCAYALTHTLLLAQLSFCVDNIIPNFFCDLAALLQLSCSDTSLNELVIYTSGAAVFIFPPSGILVSYGRIGISILRVPSTKGICKALSTCGSHLSVVSLFYGTIMALYFSPSFGQSHYKGIIASVMYTVVTPMLNPFIYSLRNRDMTLALEILIRNKNLFTT", "length": 313 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2QWK6-1", "protein_name": "Calmodulin 3", "gene_name": "CALM3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VSAEREEEGVALKFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEVTASPVLGPAREGPRASAPSWGGKQPLAIACNQPRRSSGFSWDLPSFENLLSSTLWSPASGDGRGVEHSGRPS", "length": 214 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2R7Y6-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524140", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLVAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINHLSGTKSISFVGCATQYFLFLSLGGAECLLLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIVLISASYVFILHSVIHMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A5G2RGH3-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100524855", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGRRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLSQLSLMDLMHVSTTIPKMAINYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYTVLMNRKVGQMMAVTSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYETAVYISDIVLLLLPIILISASYIFILHSVIRMHSAGSKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALRRVLGREMITQNPKVRLP", "length": 320 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A668KLA6-1", "protein_name": "Predicted gene, 52955", "gene_name": "Gm52955", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMGALLANSPLLLCWLVFGAQLSVGEGILLTLTLMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKQCGVFFFALNLALFGIFAFAQCFNPLVYGLHNRDLQSKLYPSLCCQKKLLP", "length": 296 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KLA7-1", "protein_name": "Predicted gene 7582", "gene_name": "Gm7582", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNSSSEHCNVSDWLRLEATVKASVYVVAFSITTSLTIVIIAIVSQSLQLRKEVRLVLLCHHLLCISSYCGLGVVFQGMWALLANSPLLLCWLVFGAQLSVGEGILLTLTFMALNTYLAICYPLNSPSFVDSAKYRILAGTWTTVILKNVGLFLIEGTSPTPASVFQSAPLCPVILNGMPARVIGMFSLAFLLSVILVSYCLIYREGKRAGHFNKSNIKARRTVLVHLLQISLHVIPTLIIIGLGKRCGVFFFALNLALFGIFAFAQCFNPLFYGLHNRDVQSKLYPFLCCRKKLLP", "length": 296 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A668KM50-1", "protein_name": "RIKEN cDNA A930007A09 gene", "gene_name": "A930007A09Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSLSELPQKNTDLAEMQSGPLGRCSHFFWLGVAFDAVGVAVLFTGVFANLLFYDMLLYLGSIIIFVSLLWWISWYTGNIEALPEDPLRGTSPRESGVHRSGSRRFSLTLRSVSDTFQRIRRRRRRRLHPRVVQRISSISSTDPGQLERNCDARTSGGRALFRSAKPEAVLNQFSRVQTSKSLPLGIVHTGLSICTSRSQPVFSVTSQTYPLASDSNSQMAMSSDSHVYLDSHSQEHSKISVASQIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVATQIYPLEREESQSHFLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASKIYPLEREESQSHLLVIPDSLSMVPVTSQSQILPSVSSESCVPLGPHSQGRSKISVASQIYPLEQEESQSHFLVPMPSDSFPVVPMTSQSQIQGSLAQQSHLQNLPLASQTPETDKASKSHTLAKGVPGVPPGSAQTQHPQASLAQTSQISSPVRKVPKN", "length": 636 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0A8C2LDI6-1", "protein_name": "Large ribosomal subunit protein eL33", "gene_name": "LOC100774916", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRLWCKAIFAGYKRGLCKQRGHTALLKIEGVYARAETEFYLGKRYAYVYKEKNNTVTLRCKPNKARVIWGKVTKAHGNSGMVHAKFRSNLPAKVIGHRIRVVLYPSRI", "length": 110 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LMV8-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC100755948", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTNTEGKRRGTRYMFSRPFRKSEVVPLAMYMRIYKKGDIVDIKGMDTVQKGMPHKCYHGKTGRVYNVTKHAVGIIVNKQVKGKILAKRINVQMKHIKHSKSRDSFLKQVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPQLLEPISYEFMA", "length": 160 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LSR6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "LOC100751955", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSQDEGEKENPMWELHICKLCLSICVEESRDRLTRAAKVLEQLKGETPVFSKARYTMRSFGIRSNEKIAVQCTVHGTKTEEILEKGLKVQEYELWRNNFTDTGNFGFEIQEHIDLAIKYDPSIRIHGLDFYVVLGRPGFTIADKHRTGCIGAKHRISKEEAMRWFQHKYDGIILPGK", "length": 177 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LUM6-1", "protein_name": "Tubulin alpha-1C chain-like", "gene_name": "LOC100757824", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MCECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETDTGKHIPRVVFVDLEPTAIDEVRTGTYRQLFHPEQLITGNEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSRFTSLLMEWLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYPTPLPE", "length": 288 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2LZU4-1", "protein_name": "Glia maturation factor", "gene_name": "Gmfg", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSDSLAVCEVDPELKEKLRKFRFRKETDNAAIIMKVDKARQMVVLEEEIQNVSPEELRLELPERQPRFVIYSYKYLHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRATDDLTEAWLQEKLAFFG", "length": 142 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2M625-1", "protein_name": "U3 small nucleolar RNA-associated protein 15 homolog", "gene_name": "LOC100755487", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAGYKPVAIQTYPVLGEKITQDTLYWNNYKTPVQIKEFGAVSKVDFSPQPPYNYAVTASSRIHIYGRYSQEPIKTFSRFKDTAYCATFRQDGQLLVAGSEDGVVQLFDISGRAPLRQFEGHTKAVHTVDFTADKYHVVSGADDYTVKLWDIPNSKEIQTFREHSDYVRCGCASKLNPDLFVTGSYDHTVKMFDARTNKNVLCVEHGQPVESVLLFPSGGLLVSSGGRYVKVWDMLKGGQLLVSLKNHHKTVTCLCLSSSGQRLLSGSLDRKVKVYSTTSYKVVHSFDYAASILSLALSHEDETIVVGMTNGILSVKHRKSEAKKESLSRRRRPAYRTFVKGKIYMKQRDDIMINRPAKKHLEWYDKDLKSFRISKALDRVLEPNCVIKTPEVTVSIIKELNRRGVLANALAGRDEKEITRVLNFLIRNLSQPRFAPVLINAAEIVIDIYLPVIGQSPVVDKKFIVLQGLVEKEIDYQRELLETLGMMDMLFATMSRNDSVSLSENVPAELPEKTESPCQPGDTDKNS", "length": 527 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8C2MXE3-1", "protein_name": "Glycerol-3-phosphate acyltransferase 1, mitochondrial", "gene_name": "Gpam", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDESSVTLGTIDVSYLPNSSEYSLGRCKHATEDWGDCGFKTTFFRSATLKWKESLMSRKRPFVGRCCYSCTPQSWERFFNPSIPSLGLRNVIYINETHTRHRGWLARRLSYILFVQERDVHKGMFATSVTENVLNSSRVQEAIAEVAAEMNPDGSAQQQSKAIQKVKKKARKILQEMVATVSPGMIRLTGWVLLKLFNSFFWNIQIHKGQLEMVKAATETNLPLLFLPVHRSHIDYLLLTFILFCHNIKAPYIASGNNLNIPIFSTLIHKLGGFFIRRRLDETPDGRKDVLYRALLHGHVVELLRQQQFLEIFLEGTRSRSGKTSCARAGLLSVVVDTLSSNTIPDILVIPVGISYDRIIEGHYNGEQLGKPKKNESLWSVARGVIRMLRKNYGYVRVDFAQPFSLKEYLESQSQKPTSAPLSLEQALLPAILPARPNDAAESEDTSSNEPRNTADEAFRRRLIANLGEHILFTASKSCAIMSTHIVACLLLYRHRQGIHLSTLVEDFFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRKDEFFITPSTTVPSVFELNFYSNGVLHVFIMEAIIACSLYAVLNKRGSGASAGGPGSFISQEQLVRKAASLCYLLSNEGTISLPCQTFHQVCHETVGKFIQYGVLTVAEQDDQEDVSPGLAEQHWDKKLPEPLNWRSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPVPETEYLQKLHRYLITRTERNVAVYAESATYCLVKNAVKMFKDIGVFKETKRKRVSVLELSGTFLPQCNRQKLLEYILSFVVL", "length": 827 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A8D1BQI2-1", "protein_name": "Uncharacterized protein", "gene_name": "LCE5A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSCQQNQQQCQPPPKSLPKYSTPKFPGPCPPLVSSCCGSRSGHGRCYSSGGGGCCLSHHRRRRYHPCQPQSSNCCDSGGGQQSGGSGCSHSSGGSGCCSGGCC", "length": 103 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8D1VKI8-1", "protein_name": "Uncharacterized protein", "gene_name": "NCR3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARMLLLILIRVHSGSCALWVSQPPEICTQEGTPAFLPVPSTPARGDWPLALSHGTGTNWPQGRRVVVLGQGVRTGNGTPLVVERGPAQLATPTIFLLRAGFYAFGFLSVAIGSTIYYQGKCHRHMGTHCRSADGL", "length": 136 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5XVN6-1", "protein_name": "SPATA31 domain-containing protein", "gene_name": "LOC689526", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESFLLLMNSAIESWMNTSTMDIATDLSIAILCGVGLFFLLIPFLKDCPLSPASGNKTDIPKDVKRGRSNTRRKTDVEKGCRDGGKTVEETKTPSQPMKILTRQLLQDSTPQIFWNSSQKLDHLLLSQLFSSLTSLEDLILQKFNRRFWGTSSIFSESVVAMAHVLRNPSFPQQKSVRFSDPCVTDQAPSQAQGLRQQHRYHPRLHRQRKTSLVGMTWVPEKKILPISTPKQIHPCLKRRAYGVSCPTTEKGIQTSLPPECLSHKHGLYSKAVKGYVKRNHQKAIGKPPGNWLRDTLKTKAIRPASILSEHLRMFLHHKEPQTKDKATNVEKQQGTCIRSPPSKKLKQFQGRFPPNTDHYCKRRPQLSQPGQPSILNSKSYKLRKIIQSVLAGMTLMKDRADFSMQSQFSQAPQSSVCNAKRYKYSKRMGSVPRRVPLKKDTARYDMGKPIKKCLGAGTKNVPHSACSILGKRLRARNLALKKGQASVMNPTGNYCLHDSKAEMKLASNNTALPVQCRRTPYLQILEALNPIPPGVLASKLPRIVFPSSPICDFKEEYYSKAATVLKNLHHQDPGGTRVKSTSAASLESALSMCSAAKIQKTQRAPPPAASRGLSKAHTDLLKRHLSIQHSALYFEQGRIIQGTGKGSLQQNTNPQKAKHAPLKSFHEGDSRHHSWNGTMVGPGKRVPPAAAKQTKAVEVKKETPYAWSLGSNESHTGKDINISPRVFGSLGAKRSPGHLQTCTPQHSQDSTLRTQGHRNIILCSNKQPQPRPGRHDPECPSTVHPAKVNLSSEHSMSSFQNTCQKPKTAQGSCERADTKENRVLKDKIRINHLKDLCPHKERQGSIRPTAISQGGRLGRSRPCSLSSTQLKDTAKTRTSDKRQATSKSSWKSDIREVLKYGYVGSKDIIGQEDTSKKDQPPAVTERTEEDWTGEKAMCNMIAHLQYLTNFLFEIMEDTEWDPSKLQGCEVESLTFQLGSSSDSSEGDDDINQGTSTSTMSFGQTSPEMHNCSFTKTGIGDKTQSEIKAKTACDQHLNQVNRGMFSDQLPMPKEYDLSCRYRGIQHQQELGLPDQTFYQYKLRMTHCPHGGTKGHNYSFGYRKLGDQQQPDFTHKALDPHQSAKEDMGCVSCLSPKGSRPVKHRRTDCFSP", "length": 1151 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5XWP3-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "ENSRNOG00000063695", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQRDMCHMTPYRLLCVLVALALSGCNVAQEVTQVQSTASRQEGEEVTLDCSYETSYVAYYLSWYKQHLSGDIIFLIHQISSSTAEERSGRYSLVFQKSLKSISLVISASQPEDSGKYFCALSDLTQC", "length": 127 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y4M0-1", "protein_name": "Large ribosomal subunit protein uL14", "gene_name": "LOC108350588", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSEQRRGGSSGAKFRISLGLQVGAVINRADSTGTKNVYIISVKEIKGRLDRLPAAGVGHMVMATVQKSRPQLRKKVHPAMVIRQQKSCGRKDGVSLYFEEDAEVIVNNKGKMKGSAITGPIAKEHADSWPRIASNAGSTA", "length": 140 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y5C9-1", "protein_name": "Ribosomal protein L32 like 2", "gene_name": "Rpl32l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALRPLMKPKIIQKRTKKFIRHQSDRYVKIKRNWRKPRGINNRVRRRFKGQILVPNIGYGNNKKTKHMLPSCFRKFLVHNVKELEVLLMCSKSYCAEIAHNVSSKNRKAILERAAQLAIRVTNPNDRLCSKENE", "length": 135 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y6V7-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "Pate4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNTEPLFDIVINCPIAPQFILKILLFPYPANTNLICNTCNRSENSECKNGTGQCTAPEGGSCSTISIYHGQRHVLSKQMCLGHCEEKPHYNGDFMIYVMCCSKNLCNSF", "length": 110 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5Y7P1-1", "protein_name": "Heterogeneous nuclear ribonucleoproteins A2/B1", "gene_name": "ENSRNOG00000069815", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEREKEQFCKLFLGGLSFETTGESLRNYYERWGKLTDCVVMRDPASKRSRGFGFVTFSSMARPHSIDGRVVEPKRAVAREESGDPGAHVTVKKLFVVGIKEDTEVHHFRDYFEEYGKIDTTEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSGQEMQKAQSSRSGRGGNFGFGNSRDGGGNFGPGQGSNFRRGSGGWESSDGYGSGRGFGDGYNGYGGGTGGGNFGGSPGYGEGRGGYGGGGPGYGNQDGSYRGGYDNYGGGNYGKGNYNDFGNHNQQPSNCGPMKSGNFGGSRNMGGPRDEHRSFPSWKGYNGVFGKQSPLTWIKTHSL", "length": 347 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZKP8-1", "protein_name": "Glycerol-3-phosphate dehydrogenase [NAD(+)]", "gene_name": "Gpd1l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGATTLRVCIVGFWSWGSAIAKIIGTNVKNQQKFASTVKMWVSEEAVNGRKLTDIINHYHENVKYLPGHKLPENVVAVANLSEAVQDADLLVFTTPHQFIHKICNEITGRVPKKALGIIHMESIDEGPRGLMLISDIIREKIGMDVSVLMGANTAREVAAGEFCETTIGSKVIQNGILFKELLQTSNFCITVVDDADAVELCGALKHIVAMGTNFCNGLHCGNNSKAAVLRLGLVEMITFTRIFCKSQVSTTTFLESCGFANPITICYRGSDCKEAKTFPRIGKTMGNLQKEVLNGQTLQGLKTSALVYQFLKQKGLLAKFPLFVTVYRICYEGRPSTEILTCLQNHPAHM", "length": 351 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZL63-1", "protein_name": "Ankyrin repeat domain 13a", "gene_name": "Ankrd13a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSDQSRKAAAEGGSSPMVWSRPARAPPGGRADGRGPIVERTTGEGRAGDESRRARTVGFVRGDLGLPKGPAVPQNGGGRVSRRGGLVGRHGAGLGPFRKSGPPPRSVMERLAYFPVRGGSAGSSRFASCQRGRERAGRGVGAAERVPEPVPSPARDPGPPAPPAPDSEALVVRCARHLAARRSPPLALRPVGRAPETPSGGSRLVAGGRSGLGGDLLAMSSARDTSSRFPLHLLVWNNDYRQLEKELRDQNAEALDPRGRTLLHLAVSLGHLESARVLLRHKADVTKENGQGWTVLHEAVSTGDPEMVYTVLQHRDYHNTSMALEGVPELLHKILEAPDFYVQMKWEFTSWVPLVSRICPNDVCRIWKSGAKLRVDITLLGFENMSWIRGRRSLIFKGGDNWAELMEVNHDDRVVTTEHFDLSQEMERLTLDLMKPKSREVERRLTSPVINTSLDTKNVAFERTKSGFWGWRTDKAEVVNGYEAKVYSVNNVSVITKIRTEHLTEEEKKRYKEDRNPLESLLGTVEHQFGAQGQDLTTECATVNNPTAITPDEYFDEDFDLKDRDIGRPKELTIRTQKFKATLWMCEEFPLSLVEQVIPIIDLMARTSAHFARLRDFIKLDFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEERQSVEGTQAECAASDATNFEVDQSVFEIPESYHVQDNGRNVHLQDEDYEIMQFAIQQSLLESSRSQDLSGPASNGGVSHAHSYEAQYERAIQESLLTNMEGRCPGGLSDSSRFDSDLRLAMELSAKELAEQELRLQEEEAELQQVLQLSLTEK", "length": 809 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZP24-1", "protein_name": "Large ribosomal subunit protein uL30", "gene_name": "ENSRNOG00000064315", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAVPEKEKKVAAVPGTLKKKKVPAVPETLKKKRRNFSELKVRRLRKKFALKTLRKARRKLICEKAKHYHKECRQMYLTEIRMARMARKAGNVYVSAEPTLAFVIRIRGISGVSPKVREVLQLLRLRQILNGTFVKLSKASVKMLRIVEPYIAWGYPNLKSVNELIYKRGYGKIRKKRIALTDNSLMARSLGKFGIICMEDLIHEIYTVGKHFKEANNFLWPLKLSSPRGGMKKKTTHFVEGGDAGNRETR", "length": 251 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZPV0-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "ENSRNOG00000066253", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIVQRIFRLSSVLPSAVSVHLRSNPGVTAVAFNKEPDPVQKLFVDKIREYKTKRQVSGGPVDTGPEYHQDLDREPFKLKQLYGKGEMDKFPTFKFEDPKFVVIDKPQS", "length": 108 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZRI3-1", "protein_name": "Natural killer cell cytotoxicity receptor 3 ligand 1", "gene_name": "Ncr3lg1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASQSCQRGPENAHMHPKGPCCSALCFLCSLGSSPHGSSLGPLRKCGRRSKPVQSSPEGSRVAEWPDGLLSLLLLLWSLLPSAGGLELEMAGTTQIVFLHEDVTIPCKILGSLHLDLSIVGVIWSLKKDGDESEVFKFYGDQLEAVRPGANVSLLGLEHGDASLYLPRFELWEAGEYQCKVVVTPEKKEGTTRLEVVAHPNMSLSEKPATARGGKEKLIICQLDGFYPEALDIKWMGSALKDSHFQEITEGVVTGPTVKNDDGTFSVTSSLALKPALEDHMYQCVVWHRSWLMPQSLNVTVFENTRDSTHGTVPPTAEVGPPVSEPRSVMIYVTIIGLCILLFSVIVCGLWKWKRLTTSNTGLCLRLDVRC", "length": 371 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZS91-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134482834", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPTETEEELPTPTPKPSISEEGNFHSQYQVLGTSGQGGNGKVLLAHNRLTGTPVAVKVLRKDKQWFQPAMMEANIMRKINHPNIVSLIQVIEKETRIYLIMELVEGQELYQYIRESGHIEEDEARQIFEQILSAVSYCHGKGIVHRDLKLDNIMIDKNKKVKVIDFGLSTQFPPGKMLNHHCGTHSFGSSELLLGHRYDRPKNDMWIIGVVLYCMVVGKLTFDSVIIQDLQRQVVAGVYPAPCGVSKELEDLLSKLLRVNPNFRPTARKAMKHPWFKEHWNGLIVPYEELLPLTPDPAILDAMKSIGLQASVVKHTLKQRKYNEEMATYFFLQKQALQGDGCTAQAQQVSPVAAPFPSLDPAAAFRLEPKRSGSLPVLGTLRVSSSHGHVSHYGQNAHPKGGKRYTVAGRLRPLPMTPTQDHYHKCAVSVPCIQTTSIFSEKSSNKKIKEDNPLSHRAPLEDKPIPSRVRHRGFKGWTRNIANALIKLCCCMPRRKKPRLGQNRISPQK", "length": 509 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZT61-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "LOC134479845", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDITSIKKTLGSQYRVAFFLGQGSYGSVKLAWHRRTQALVAIKTVEISKNTIRAILSEMTTLELLHHPNIISLFQILVTANQIHFILQYAPGGNLVQLISEEGPLPEEKAKKMFGQIVSAIRHCHSLDIVHRDIKPQNILIDGEGNVKLIDFGLAVKCRPGTLLSRHCGTRGFNAPELVLRQPYDGKSSDVWSLGVLLYFITTGYFPFRGNTIDEIEQKITTGTYTVPHHLSGQLENLIHQIFTVSPEMRPSIEEIENHPWIKKCELKIPPMSDPDYKIIEMLCGMGYNAKDILESLQKKRYDEPMGAYLSLKNHVSEGYDLASITPTKPGDPCPPPPPSPAHPSVFGLPLRRRASEPNFGLLHRQPSREQNPLDLILSGLNMGRCVSMPPIAVYYPKKQRSTSTRALHSRPVASPCVYNNMLGVEIILPHKQDIEMNTSSPPQTMGWFKRLRKGIGDCFSRLCCFPRAPKKKTQHRSSKRVAPLKKAASSTI", "length": 493 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZXB5-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb2l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLSSLPGRNLAMARLLLLLLSAACLHTGNSAGYQEKNDFGVDQPDVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKHYHGEFIYTSTRPFIHEHFKGRLIMNWTPGQTSGVLRILNLKENDQATYFSSVFLQTPEGMKLWQSIPGTKLIIHALDTTMRSPSIIPSVVPTDDLEYTQGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZY57-1", "protein_name": "40S ribosomal protein S26", "gene_name": "LOC134478821", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSPGPRRPRQEAGSKPRELQQRVLASVKRRCLFSSLGSNTTKKKRNNGRAKKGHGHVQPIRCTNCARCVPKDKAIKMFVIRNILEAAAVRGISEANVFDAYVPPKLYLKLHYCVSCAIHSKVVGNRSCEARKDQTPPPRFRPSGAAPQPPPKPM", "length": 154 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYE5-1", "protein_name": "Oligosaccharyltransferase complex subunit", "gene_name": "Ostcl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METKHSALLRTFPFLVLECPNLKLKKPPWVHMLLAMTMYALVVVSYFFITGGIIYDVSIEPPSVDSMTDEHGHQRPVAFLARRVNGQYIMEGLASSFLFTMGGLGFIILDRSNTPNIPKLSGFLLLFDFVCVLLSFFIARVFMRMKLPDCLMG", "length": 153 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYN2-1", "protein_name": "Non-selective voltage-gated ion channel VDAC2", "gene_name": "AABR07051831.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAECCVLVCPRPMCIPPPYADLGKAARDIFNKGFGLGLVKLDVKTMSCSGGEFSISGSSNTDTGKVSGTLETKYKWCGYALTFTEKWNTNNTLGTEIAIENQICQGLKLTFDTMFSPNTGKKSGKIKSAYKRECINLGYDVDFDFDFGWLAGYQMTFDSAKSKLTRNNFAVCYRTGDFQLHTNVNNGTEFGGSIYQKVLCEDFDTSVNLAWTSGTNCTRFDIIAKYQLDPTASISAKVNNSSLIGVGYAQTLRPGVKLTPSALVYGKSFNAGGHKLGLDLELEV", "length": 284 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZYX3-1", "protein_name": "Methyl-CpG binding domain protein 3 like 3", "gene_name": "Mbd3l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LGELGNAGRLTGSMIPSRLQKRRKIQVAKSKRKAKHKSGTTLRNPLRLTSCIFPQPVTVITSYPENKTRYRRDEAKLKKPQQLCALERLKNFQFGGDSKENLSCPLELANAVERIARGMQDEASNQSGDKDQLTSGQVTSDQPPYLETNEHVALQLSPSFSSQGVTLPVPLHLSPSYFLRKVTTGDIQRQAWKVKKARKRLAEALEADRLARQTENMRE", "length": 219 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZU9-1", "protein_name": "Keratin-associated protein", "gene_name": "ENSRNOG00000070302", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "SPSTCELSSSLHSDCQETCIEPSICQRSCVASSPCQMPCYYPRSSTACSPCQGTYDGSMGVGSNSLKSFGGFTGSLGYGNSGFGSFGFGSCGIRSQGFGCNFHRPGYFSSKSVQSSYYQPGYTSGFC", "length": 127 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I5ZZY5-1", "protein_name": "Ribosomal protein eL8/eL30/eS12/Gadd45 domain-containing protein", "gene_name": "ENSRNOG00000064452", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTKIKAVTEESEAQGEGCSQQHRYQELLVYLNPIAQHPGFPPPDLRKIEKGKKKKKRRPTKQKQIRHGVKEVQKFVNKGKKGIMVLTGDTLRGTAIFQLCARTRICPTSIFPLTDLGAAMGSKHPTCVIMVKLHEEYHEAYDKCLEEVQTLATPL", "length": 155 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A2Z7-1", "protein_name": "Developmental pluripotency associated 1, pseudogene 1", "gene_name": "Dppa1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MMPPQVLISGLLLLLPAAWTTTVTSSDQLWNNHTEVVPTQSPLKISTKDLYIGTSVSAALLILLAGVLAVLKYRHRRKKILESAVVFHGFQNGVFQSTEQSQAVDVYVIEDSKVPVAH", "length": 118 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3D9-1", "protein_name": "Small nuclear ribonucleoprotein Sm D3", "gene_name": "Snrpd3l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSIGRPIEVLQEAQGYMVTRETITGEVYPGKLIEAEDNMNCQMSNITVTYRDGPVAQPEQVYICDTKIRFPILPNMLKNAPVLENLKNKNQGSRAGQGKAAILKAQVAARGRGHEMGPWKLPEAKTVFSIKENFPSCLLLGF", "length": 142 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3N0-1", "protein_name": "Uncharacterized protein", "gene_name": "Pramef20-ps2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQTPPTLEKLAIQSLIRNEDVAMSSLGELPAVLFPALFKEAFTGKHINLVKEVVAAWPFPCLLVGALMKTPNLETLQAVLDGVDMQLTRKFHTRRTKLQVLDLRNMHHYFWNIQAGEEDSSCSAENSKEKKVVKVFHRYALRKRVKVIVELYIHSCLKEEQTCLLKWAQQRKGSLHFCCTKMKVWNLSLCGIGEILKVFDPQHITELELHTEWTLLELAHFAPYFGQMRNLQKAFLAPLHRIMFSNSNGKRDREAKCIKKFISQFSKFNCLQHLHMFCVHFLRDHMNQVLGCLMTPLTLSITYYLISQKDLDSLSRSQSLFQLKHLDLRGVVLCDLDIMPLRGLLEKVADTLETLDLQWCKMTDSQLYALLPALRHCCQLTMVNFYSNNFSVPILKDLMQHIANWSRIRVQQYPAPLECYDDLAQVSVKRFAKLSSELMYTLGVIRQTKNISFATDICHTCGQRCVYHNGSRLCCCWH", "length": 480 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3R7-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "LOC120093241", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEAARKALTVVAVLGSGAGVGSILFALVTPGELQKQLMLQEMPERDSRRRDAAVRTKELVMATLKDAAATKENVAWRRNWTVRGDGRSA", "length": 89 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A3T5-1", "protein_name": "Large ribosomal subunit protein mL62", "gene_name": "Mrpl58", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EHGGRLGPTLEPEPSWNLVAPAARALCSPDSAQTGERHRVQEHLQPGQAVPRIQGRGYRLEGPGEPRKAGRKGRFLLLLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIAEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAKASQVPKEPSKEDAQLQRLRIEKMNRERLRQKRINSTIKTSRRMTMD", "length": 211 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A478-1", "protein_name": "T-cell activation Rho GTPase-activating protein", "gene_name": "LOC134485907", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEIHRTLLCQGPVELTSGRKRNKRYLSLFDDVLVVSTNLTKKKFKIKCIIPLNYLWVVDDVELVRANQTCTCKTIFFYWATGNALATFRSKEQKVQWYTFLTRSINEAKKGIKKTFPLHIFPEDIQTCDSSLCVTATNMDTVNDIMEKLLPMIRVHNIEDYQLWFSPGHKETPRALQGHEYPYDIIMNNVQNNLSKSNSKIFTAFPPLPGLFMENQSWDTGGQFILKPRDSAGSQQQDAKERPRKSCMTSCFHGGSVPHHDQECSDPRDDKRGKLFGQDLSSICQDGKLPTIILDMLSRIKDKGPTTDDIFLITPNGSLCKTIKEKLDNGENVDIYQQPVHVVAWILKEFLQSIKGSLLTSKLYDQWLIVPEKVNDKEKLAAVKSLLEKLPKPNADLLRQLFRILHQIKTNSSVNNMSSFRLSLETAPCILWLPSYRNNILTNDIAKKISLVTFMIDNSPELFGEDIVAVWYETSLYHPPGLKYPCSQNTPSSNGIMEETEHGLSSCPGERTCTPDFDELPRSGAAASIPYEGILASEKGEGNESTTQPEPVQNSPTPQTKKELGNCSPNILKDVNVPAVILDMLSVIAEKGQCSDDIFRMQSEKSHWSLKEKVNTGKHVNLKEESVLTVASVVKDFIKNIEGSLLSCDLYENWLSIPDEGPLLGKIASIQNILLKMPKPNYVLLKQLICVLQKIKAASTNQLDTFDLSVRIAPHVLWNPTCKTLFGRDLSKKLSIIKFMIDNCQELFGENDNIFCEDNQKSYDINLSSDTLNTSGKATLMIETIDDHDVKTSKSNTKKLEMSSAVPHEGGPTAGHNGTTSKYNVPQEKILHD", "length": 834 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A4C1-1", "protein_name": "RRM domain-containing protein", "gene_name": "ENSRNOG00000063783", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LTCCAINSDPHPDSGLKMEGHDPKEPEQLRKLFIGGLSFEATDDSLREHFEKWGTLTDCVVMRDPQTKRSRSFSFVTYSCVKEVDAAMCAQPHNVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIKTMEVMEDRLIDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGRGGNFDGRGGYGGGGGGSRGSYVGGDGGYNGFGGDSGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGGYDSYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGRMKRGRFGGRSSGSPYGGGYGSGGGSGGYGSRKF", "length": 350 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5E5-1", "protein_name": "Paired immunoglobulin-like type 2 receptor alpha", "gene_name": "Pilrb1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQILLLLLSATCLHTGNSGGYTRKNYFGVNQPAVLSGVQGGSIEIPFSFYFPWKLAKDPQMSIAWRWKEVHGEFIYQSTLSFIHEHFKDRLILNWTQGQTFGVLRILNLKENDQATYFSQVCLQTTEGMKCWQSIPGTKLIVTHGVICSLLISPQLSYDHEDPLHHHLCRPHSWPGEHKGPKESFTAEPGGHHWDGRGQSCSHHPPLRMDDLSVVEAKASRVTPKPQPE", "length": 230 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A5T5-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "Rpl21l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKGMGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSRDGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA", "length": 160 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A8T3-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RMNCSQAPGFILLGLSRDPEKWQLFFSVFLVLYLLGLSGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKILQTLWTGDGSISFSGCLTQLYFFAVFADMDNLLLAVMAIDRYAAICHPLLYPLLMTPCRCGVLVSGSWGVAHCVSLTHTLLLSQLYFHTNQMIPHFFCDFGPLLLLSCSDAHLNEGLMMALAGVFGISALLCIVSSYSCIFYAVARVPSAQGKRKALATCSSHLSVVLLFYSTVFTTYLKPPSSSYSSGEVVAAVMYTLVTPTLNPFIYSLRNKDVKSSLRRILNMVKSPD", "length": 310 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A969-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000067430", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFFLFWTFPGLELDKLALLSFESSSSIHPRACASTPAFQRSHNPGDAAQQEAKQREAEMRNSILTRVLDQSAWVRLSDLALVKPDKTKAVEHRVQMARYGQLSGTVSEQGFIETPEKVSQQTEEKATVKFNRREVTDSDEDDDY", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6A9H4-1", "protein_name": "NAD(P)(+)--arginine ADP-ribosyltransferase", "gene_name": "Art3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQATARGVIKRKAFPGRQLSLSTTSCPGGKITPAESGNRFESGHHLNVLQRHKRQKRKMKMGHFELVTTLLAAMVLMDVFQVQAEVLDMAENVFDDEYLKCNSRMEMKYIPRMHGEELANDELLQSVWDKAGIQWEAQKAQLSLPKNFKDAYGIALTAYVTEAQDQSPFYHTFNRAVKIAGLSRRRYIYNFPFKAFHFYLVRALQLLRRPCEESYKNVVYSTSPNISFAFGEQNQARLGNFTLAYSAKPQTANEQRLLTIQTCFGVAVGKLLNKESEGIVLIPLSEVFQVSRKGTDDDLILHSINSTCSYYECSFLGGLKAGSCTTNPENPDPGYLNNPDLDSQKLEDSGRKSLDSVKMPEIKVLQGEENPLLPDEKPEDRNRGKANVPTPGLVPVPGPKSHPSSSSGHRLLPSDTASTILLIAAAVDFIAL", "length": 433 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AA84-1", "protein_name": "Ankyrin repeat domain 10", "gene_name": "Ankrd10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSAGAGAGVEAGFSSEELLSLRFPLHRACRDGDLVALCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKVGAGTLRRHFPRGVLLGSERTPPCLESAATARSAPPAPPEGSRAHVQQSGLGVKGWGRGGAEAALAPPGVQGACAAARSPGPRGARGVMGGGAEMGSVWPAPRRTQGACAHLWLFRAGRADRMQLRRFARRPSGFGEWCGRLLLEARREPGASRSCLMETGRRAPLRHKGMDAALAAGGVRSAPAVVDGGLAARPTGPLSQLGPPCLECLIQLVRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAQTDLRNASGLTAADIAQTQGFQECTQFLLSLQNHQMSRFCPNGTLSGGHENILPNHINLGTNRKRCLEDSESLGVKKARTRVPSLDHTMPLANGDAEDDADRMHVDREFAAVSDMKNSSSVLNTLTNGSVINGHLDFPCVAQLNGMESRSDPCLTGSNGISNGQPFPSGQGPVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDIGESLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGAMQLHHGS", "length": 621 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ABF4-1", "protein_name": "Nuclear transport factor 2", "gene_name": "AABR07018058.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGDKPIWEQIGSSFIQNYYPLFDNDRTQLGAIYIGASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSIMAQQYQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNSS", "length": 127 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC04-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r38", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLSQNKTLKSIEEVALHVILLCQVGVGTVANFLLFIHNFSVILTNCQLTPIQVIVTNLAVASAFNLLLLAFPNNVTLFVPRKAPSDLSCKLWYFICLVARSTNLSSTCVLSTYQFVMLLPGNWSRVILKGRAPKIVNYSCYGCWIFSVLNNAYIPVKVSGPQKTQNDTDFKDKWVCSTSGFSVGMSFLRFAHDALFISIMIWTNVSMVILLNRHHHRLQHIHSSNQDHRAYADTRAAHTILMLVVTFLSFYLLDCICTFFHISFVDSRLLLRRIKEVLTASFPTISPFLLIFRGPKNPCSLLSRS", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC51-1", "protein_name": "Non-histone chromosomal protein HMG-17", "gene_name": "Hmgn2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPEPKPKKAPAKKGEKVPKGKKGKADAGKDANNPAENGDAKTDQAQKADGAGDAK", "length": 90 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AC66-1", "protein_name": "Eukaryotic translation initiation factor 6", "gene_name": "Eif6-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVVRASFENNCEVSCFARLTNTYSLVAIGGSENFYSVFEGELSDTIPVVHASIASCRIIGRGTSVWGTGMGYWYPTTTTDQELQHIHDSLLDSVQIRRVEEGLSALDNVTTCNDYVALVHPDLDRETEEILAGVLKVEVLTVADQVLVGSYCVFSNQGGLVYPKTSIEDQDELSSPLQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAKPSTIATSMRDSLIDRLT", "length": 245 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ACC5-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000069094", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LPLLAFEKYVVCDGELQRLQVSCEVLGDVDPPQRLSASVVQMKQSVVEFLGTLVEQDAQGAAEDMDNALVGDNEEAEGENNSTRTNSDGPFTERPNQRLNNR", "length": 102 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AEL7-1", "protein_name": "Protein phosphatase 4 regulatory subunit 3C like 1", "gene_name": "Ppp4r3cl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEDKLYRVKVYVMMEDKQWKDIGAGQISSKYIDRLQGVCLLVHSESDGSPILECKIQPNVPYQKHQGKVIIWSEAKNHGTAIHFQEPNDCQETWEVICQVQGKDPNVEITQLLTDDLESFKDMLLSWNKVEMSSCELHTLENIADLLSFVNEAPSHKKILTLVLEKEGYIKKLLQLFKTCEKHQNIDGLHYLNNIIRGILFLDNIHLFNIMFSDEFIMDVVGCLEYGPGLDEPKQHRQFLTQNVKFKNVMQITHSQLRKKIQQTYRMQYIYDIVLPTPSIFEVNLLHDLSTMIFFNKIEIITMLQEDEHFLLEVLAQLKDNTVSNERRHELLLFFKEFCAFAKTLHFQKKNTLLKTLIKLGIISALKVVVHMHDYQIQVAALELFAHLVEYSPRLIRAYAMKEAQYSEDNDGLLINIMIKQMTCDSDPEFSRSIILTTVLHAILDPENMRVTTKGHERRKFLNYFYRHCMNKLIEPILSITVENNSDDNRVNICPDNYQNAQLLGAILEILTFCVQYHSKYVKNYIISKNLLSRILILMSSKHTFLILCAVRFMRKMIGLKDKMYNLYIVEKNLFEPVVNAFMHNGHRYNMLNSAIIELFEFIRQENIKSLIANIVEKFFMFFESIQYVQTFKGLKTKYEEEKKKKRERQLRKSLHNIIYQRIYCRHIKAMEVKVKADIFCRQITDKEEEREKGGGGGEGGGGRGGEGEGGREGGGREGEGGGGGKGGRGEGGAVLSMGSDIPSHYDMFVKINEMNERENVIECRKRKSSATSEYSTSCGDTSDNGISTVYCSSLVPLVDYAYDTDGEDDDGSYGNNENEEEEEEEEEEEPPKKKPYFHP", "length": 840 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AFG0-1", "protein_name": "Cytochrome b5", "gene_name": "ENSRNOG00000064959", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFAKEKGKFEDMAKDVKCYTLGEIQKHQDIKNSWAMLHHRVYDLTKFLEEHLGEEEVLRERAGGHASENFEDVGCSTNVQGLSKVHIIGLFHPALITTIKLNSNWWDQLCSPTSQVVVAHTFNPSTREVGAVGFP", "length": 135 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGM4-1", "protein_name": "Proline rich 18", "gene_name": "Prr18", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLRLLGRVMSFSPMPPPPPPPPPPARTQGGPAARQLSRRPCGPPAASPPAPAAAAAGEKKRRPPEMLLSSSWPSATLKRPPARRGPGLGPGTPQPPTSARVPPQPSPGRGGTSATCSAPRRIACSHIPAGSTASGTSAGAGAGPEDATRFSLSLTPEAILVIQRRHLEKQLLARPRRPFPAPSADPRRPLVPCPRTRSSTLRRGGPTSVPDAPLAVAVSSRPPRASLLPGGLQATMPSPRPSSLRPVLKVSLLNEKHKYDDEEYEEEVEVVDEGLVRKCTEWLRGVESAAAARGRTGHLDSLPHLSTL", "length": 308 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AGS9-1", "protein_name": "Olfactory receptor", "gene_name": "Or5aq7b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVWNSTGVKEFILIGLTENPNWQVPLFLLFCIIYFIILVGNCGMIFLIWLNVQLHTPMYFFLSNLSFCDICYSTIIAPKMIINFLSEHKSTRLFACILQSFFFAVYATTEVVLLSMMAYDRYVAIANPLMYTVIMTQSICTQMILASYLTGLINSLIHTIGLLKLNFCGPNIVNHFFCDVPPLLKLACSDSHINEILLLVFSGIIAISTLIIVIVSYIHIIIAILRIRSAMGRGKAFSTCASHLTAVALFYGSLTFSYIQPSSQYSMEQEKVSAVFYTLVIPMLNPLIYSLRNKDVKEAAQKLMLGKRNAC", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AIA3-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065493", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MIFVPFFPHPGSIRKDGVVYAHTMENSSNSPRETREPAPLRRTWRGCFQRALPRVSKFFRRGRGSTGGWDNGSPRQGPMHSDQDLRHLRSLLSKESCPVMSK", "length": 102 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AK52-1", "protein_name": "Olfactory receptor", "gene_name": "Or9s14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAIEVHRNGSLSAMSLQGFVLLGFRGGAETQALLFTVFLVLYVVTVLGNLTMIMVITLDARLHSPMYFFLKNLSFVDLCLSTVVVPNALASIFFSSKTISFAGCATQFFFFSLLAATEAVLLAVMAYDRFMAICSPLRYPVTMCPMTCVRLVLGTFCVACLNSIVQTSLTFRLPFCSSNRIDHFYCDVPPLLQLACASTALNELVMFGICGFIIVCAVFVVIISYVYITVTILRMHSGSGRHKLFSTCGSHMTAVSLFYGTGFAVYGQPGGVASMEQGKVVSIIYILIIPMLNPLIYSLRNKDVKDALRRLGQRHSLAKESG", "length": 322 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMC4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "ENSRNOG00000068014", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCVFKNAWGHRNMCSMALCSQFGTHLHVSLTDAHSLSCNLIIRSPTKAEPLRYEGHCSMDEIVFLSFNNVNKTMPLGNQEKMANATKVQKCLTQWIDLLGQDLRDKVSEIKVHTTKTSGHPTLRVTMLSKHRHGEIIGASWEFNISENYSFILDLKTMKWKPQDIMKEWKDDETLMKHLNLSIVECSQKFNEFLNQHEERTSRYYLDSALPPAPPPLFKGFTILLWHSYTPAISPTSSDTHSSFINFRDGLIDINFPL", "length": 258 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMN7-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "ENSRNOG00000070681", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPGYITLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLACAEKKAAGKGDVSTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVLYCIIKGKARLGRLVHRKTCTTVVFTQVNSEDKGALAKLVGAIRTNYNDRYNEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AMX9-1", "protein_name": "Ribosomal biogenesis factor", "gene_name": "Rbis", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKNKLKGQKSRNVFHIASHKPLKAKNKAKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELHHEKEPANVDEATRLMAQL", "length": 96 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ARJ3-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "Or8b101l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTLGNVSSVKEFILLGLTQQPELQLPLFFLFLGIYVVSVVGNLGLIVLIVLNPHLHTPMYYFLFNLSFTDLCYSTVITPRMLVGFVKQNIISHAECMTQLFSFCFFVIDECYILTAMAYDRYAAICKPLLYQVTMSHQICLLMTVGVYMMGFVGAMAHTGSMLSLTFCEGNIINHYMCDIPPLQKLSCTSTSINELVVFTVVGVNVIIPTLTLFVSYTLILSNILSIHSAEGRSKAFSTCGSYIIAVSIFFGAVLFMYFKPSSASVDGDKVSTIFYTILGPMLNPFIYSIRNKDVHVALRRTLKKRIFT", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6ATM0-1", "protein_name": "ELAV-like protein", "gene_name": "Elavl3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKDAGAGSCRYKGLGAAAVRPRARSAQRGPVGGREGGREERTHYPAPDRPDRGPAAEGRAAEISVGKSDFCGPRGAALRAPSTARPLPPSTCRQGSGRRSAHPQARVSSRPSRAPPPPSSPLRRPQSQTPGRDPGVSTRRPPRSARPPEPPSIRTAPAGHTRMVTQILGAMESQVGGGPAGPALPNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSKQHKA", "length": 522 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AUS4-1", "protein_name": "Ubiquinol-cytochrome-c reductase complex assembly factor 3", "gene_name": "ENSRNOG00000062467", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTAAGKTLAVVAVLGAGAGVGSILFALVTPGELQKQSMLQEMPERDSRRRNEAVRTKELVIATLKDAAATKGNVAWRRTGQLEGQGRMCGTKGTNKCSLPIKWISQLDI", "length": 110 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6AWY6-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000065059", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKATKKSKNTTSDVEPSTSSAKSKKAKTCYQYQTRAGEKKSRWSGSDCSVNVQKTTKKAKRTLPRIAENNTSEKTVPPTKKTKRAKDEQLFGHYHRLMDEISTSTERGPEQSSTDSSSASTSDEESQ", "length": 128 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B5G4-1", "protein_name": "protein-tyrosine-phosphatase", "gene_name": "Ptp4a1l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARMNCPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCKATHDTTLVEKESIHVLEWHFDDGAPPSNQIVDDWLSLVKIKFPEEPGCRIAVRCVAGLGRAPGLVALALIEGGMNYEDAVQFIRQKRRGAFNGQQRLPLEKYHPKMWLRFKDSNSHRNNCCIQ", "length": 173 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6B646-1", "protein_name": "Ankyrin repeat domain 66", "gene_name": "Ankrd66", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSREARLHHQTPGDQEAGAACLLSWGGGGASFHGVNTLTLRPAMMACSTELLKDTDSVMELSKLSDMTKLHQAVAAGDYNSVKKILKKGLCDPNYKDVDWNDRTPLHWAAIRGQMEVIHLLIQYGARPCLVTDVGWTAAHFAAESGHLNVLKTLHALHAAIDAADFFGDTPKRIAQIYGQKDCVDFLDTAEPECRDHRQRGLLFDERDPDWDLKKRELELSLPVPDQNTNKKKKRIRGSTRVNHSKAWRI", "length": 251 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G1V0-1", "protein_name": "Ankyrin repeat domain 62 like", "gene_name": "Ankrd62l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRVAGLSSKKSRWLLQSLLDQQRHSLGTGFESANILLSPKYHLKDKDLRKIHKAARDGDAARVQQLLLGKHCVNDKDKKKRTALHIACAYGHPKVVMALVEGKCEVNATDSEECTSLVKAVQCQEEECATILLENNADPNIVDAQGNSALHYAVYYKNTSLAAKLLDHEVNIEATNKDGFTPFLLAVSENKLKIAKFLLMKNASIHAADNQKRTALMHAVSHDSTNLVRFVLEQGVDLFVKDAFGLTAIDYAADFKYNSNMEILLEYKAKRYEESERANLVEKSSEEDSSRRKDQQSQELENMEKEELTEPGNGTEEQEPDGGVTSVEEPRRLDDRGDDQPQEAVTAPRTREKEQELPFTDMCTVVTGKEDEDESSWDSESVSENLPLIRIGVDGLLLVNGQAVENPEKYLHWLHNRKGEESVPNETKGVGDLQAFTPAEPGLELTSEEKHEELSRNEDCQPQVEEERTQEWSGWGAPEALCAAALDHGDIGSPLTRENGHPRARQSPSVDSEEQDGGSGLNIKEEKTRDHEEWSGDFLMDRTSKESEPAAGDLLQVKDSWSLNDTDPNKGSPAKRKSKEKHKVRGEMNAMEDADDFTPLSESCSDNKAELCCNTHQAETETESCELLTRQTGNMEGGVAGEVLKTEPARSREALKETEETGEGARVKMQLPGKDELYSEDAERQQYDMALSALHLKTKQTVRQLQETQDRQREVVRSSQRMQDHLQKLQAGCSEAEAMVQEQGKKTAELQKLHAGMIHELKEKWETIASKYLPLNIQLKYLEQELLSIKIAQKQYEKLHEDQRTLQRDAVDLQHQVQENMAKLDDEKQAMALRDSNNDSLMSQVELRIKNLESNLQKLQAEKESNERNVEKYLQRYIRERELSKTLSHTLHRTNSKLSRVRTDILLVTERNRTVQNTLTTRPVPKSPGVTEHSAYVNRNPNFIASRNLEAAMSSPQPSPELMRRRLLKKQKNMVKNITEEVDKAAAELESWSLEAYPSGSK", "length": 1003 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G430-1", "protein_name": "Large ribosomal subunit protein eL24", "gene_name": "LOC689816", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLETCRNLSAIGYIWEDNSTEEYCKSSRRHGRPTSVTMKVNLCSFSGYKIYSGHERLYARTDGKFSSFLMPNVSPHSFPKGTLGKLTGLSSTEENTRKDSRKKFKRKEPTLQKFQRAITGASLADIMAKRNQKPEVRKAQQEQAIRDAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR", "length": 193 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6G808-1", "protein_name": "Paired immunoglobulin-like type 2 receptor beta", "gene_name": "Pilrb2l7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MARILLLLLSAACLHTGNSAGYPKKYDYGVDQPAVLSGVQSGSIEIPFSFYFPWELAKDPQMRIAWRWKVFHGEFIYNSTQPFIHEHFKGRLIMNWTQGQTSGVLRILNLKENDQATYFSRVFLRTTEGMKSWQSIPGTQLIIHALITTPGSPSIIPSAVPTTGLEDTRGQRTPSLLNLGAMVGMVVSKVVVIIPLYGWVIFLWWKQRTQFRRDLVSEHPWKNFVPILPAESSSFL", "length": 236 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GB91-1", "protein_name": "Olfactory receptor", "gene_name": "Or4c117b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TNRYYFNIFMIIMQNQSFVTEFILLGLSQNPNVENILCVVFLFIYLATIGGNMIIVVTIIYSPALLGSPMYFFLIFLSLLDACTSSTVTPKMIVDFFYERKTISFECCMTQLFAIHFFTGIEVIILSAMAYDRYVAICKPLHYSSIMTQRLCGILVIVSWAGGFLHSIIQIIFTLQLPFCGPNVIDHYLCDLFPLLKLACTEPHIFVILVFSNSGSISIIIFSILLVSYGIILFSLRAHSSEGRRKALSTCGSHITVVLLFFVPCFLIYARPTSAFSSEKNAFVFATIITPLLNPMVYTFRNKEMKNAIRKMWKRLIMVSCNY", "length": 323 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GF85-1", "protein_name": "Ceramide-1-phosphate transfer protein", "gene_name": "ENSRNOG00000064148", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "HFFLEYLNNLKIMLIFLSPPTGGWASDHHSPTTGTHLRFLNSLGAAFSFISKEVVSKLQIMEHPRSSPQSEHCSSLQSMAAYEVSNKLLDLARRSGPLHSNSGCRTVLCLHRALHWLQLFLEGLRTSSEDARTSTLCTEAYSAMLCAYHSWIRQAVTVAFCALPSGKVFLEMLGEALPFMEQMCDISQFYVEHFLLDLP", "length": 199 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GFV7-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f21c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLTMYLATVLGNLLIILAISTDARLHTPMYFFIMILSFTDVCFSSTTVPKVLANYMLRSQTISFSGCLTHLYFLCVFADMDNFLLAVMAYDRFVAICHPLHYTTKMTNKFCVLLIVGSWVLTNLNALLHTLLMAQLSFCGDNIIPHFFCDATPLLKLSCSDTHLNDLMILTEGTMIVVTPFFCILISYIHITCAVLRVSSPRGGWKAFSTCVSHLAVVCLFYGTIISLYFNPSSSHFAGKDMAGAIMYTVVTPMLNPFIYSLRNRNMKGVLRKVLILRFPSKQ", "length": 313 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GGC1-1", "protein_name": "Histocompatibility 60b like 1", "gene_name": "H60bl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKGATSKCNHSLTLSLLVLLNSLGTMQVDGTDSLSCNFTVQYKVSLGQCSVNGMTVLCFDDVRQNSPVCKTEKKGNATKLCNDLNQCLSYSFYEMMKLESGLFESKGNHTLRVTVQSQYNQGEFMDGCWAFMIDRQYPFYFYPKNMTWRENQPNAIKTMSQWENNRELFQSLKFLSTGDFSLCLKKLLTDSRELTRSTIKAPDTTQPTSTTQSPSTGNSTPAMSSNQSPSTGNSTQPTSTTDYLIVFEFTAIFLALIVVSMEKKKVLPAAPLPLQYELQSPSPAVLEES", "length": 290 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GIM2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x11c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADLFNVTEFIFLGLSPNKEVQRVCFVLFLLLYMAIVLGNLLMVVTVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLILDLLAEMKSISVWGCMTQLFFLHYFGGIEIFLLTVMAYDRYVAICKPLHYTSIMNRKVCIVLVGTAWTGGFVHSFAQIVLIFPLPFCGPNTIDHYFCDVLPLLKLACSDTFLIGLLIVANAGTLSVIIFVVLLASYVVILFHLRTLSAEGRRKALSTCGSHVTVVILFFGPCVFIYSRRSDTLPVDKMIAVFYTVITPLLNPLIYSLRSAEVKKAMKNLWFRTMKADEK", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJN1-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein A1", "gene_name": "Hnrnpa1-ps20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "LSQSPPRNRTEQLWKLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTTVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRNGSGNFGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGSRSSGSYGGGGQYFANPRNQGGYGGSSSSSSYGSGRRF", "length": 319 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GJR0-1", "protein_name": "Aspartate aminotransferase", "gene_name": "Got2-ps6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLHSRMATTFHPGLAAAASARASSWWTHVEMGPPDPILGVAEAFKRDTNSKKMNLGVCAYRDDNGKPYMIPSIRRQRPRLLEKIWTKNAYPSGDWLVFVRLLQRSEPVFCKDILSLAKMSFYPNHPGETTRPSSGMPACSYKVIDTMTHKTCGFDFSGALEDISRIPEQSVLLLHACAHNPMGVDPRPEKWKEMVSVVKKKSLFAFFDMAYQGFASGDGDKDAWAVQHFIEQGINVCLCQSYAKNMGLYGERVGSFTVVCKDEEEAKRVESQLKILIRPLYSSPPLNGARIAATILTSPDLRKQWLQEVKGMADRIISKRTQLISNLKKEGLFHNWQHITDQIGMFFYMIKDGRISVAGVTSGNVCYLTHAIHQVTK", "length": 379 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GL73-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC134481331", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "TALLVSLPEQNLAMARILLLFLSAACLHTGNSSGYRRVNDFGVNQPAVLSGVQSGSIEIPFSFYFPWELANDRSMSIAWIWKYFHGEVIYNSTQPFLHEHFKGRLIMNWTQGQTSGVLRILNLKENDQARYFSRVFLRTTEGMKSWQSIPGTQLIIHALNTTMGSPSIIPSAVPTAGLEDKRGQRNPSLLNLGVMVGMVLAKVVVIIPLYGWMIFLWWKQR", "length": 221 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GLF3-1", "protein_name": "Heat shock protein 90 alpha family class B member 1, pseudogene 13", "gene_name": "Hsp90ab1-ps13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEEVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLWELISNASDALDKIRYESQTDPSKLDSGKELKIDIIPNPQERMLTLVDTGIGMTKADLINNLGTIAKSEDQTEYLEERRVKEVVEKHLQFIGYPITLYLEKEREKEISADEAEEEKREKEEEDKEDEEKPKIEDVGSDEEDESSKDKKKKTKTIKEKSIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNAWEDHLAMTSLSGYVSRMKETQKPIYYISGESKEQVANSAFVERVWKRGFEVVNMTEPIDDYCVQQLKEFNGKSLVSVTKEGLELPEDEEEKKKMEESQTKFENLCKLMKEILDKKVEKVTIPSRLVSSPCCIVTSTCGWTANMERIMKARALRDNSTMEYVMAKKHLDINPDHPMVETLRQKAEADTNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNCIYCMIKLGLGIDEDEVTAEELSAAVREEIPPWRVMRMPLAWKKWIKGSWEAPALCIVSLGLPQQP", "length": 518 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8I6GM54-1", "protein_name": "MAGE domain-containing protein", "gene_name": "Mageb11l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPHDQKSKLHSRENSYQAGGGAQAYGDAEEIAEAAAEAAEESSAKSQSQPGAEYSRNHRAPPKAKPSAKLILSSSSSESDESSHEESEPSVQKDRPFLHQDLIERRVAILLQYLLHNYNLKQLTTKEEMLKVITKKYEKDFPEILRKASEKLEDAFAVEVREVSSSQPSYDLISKLKLPNNGRIRAGKGLPKTGFLMSILGIIFIQGNSASEEDIWKILKKKRIYPGKKHRVFGEPRKLMTQYLVKLKYLEYRQVAHSDPPRYEFLWGPQAHAETSKMKVLEYLAKINKTTPHAISALYQEALKDEKERAEVRDEDNTDTTDQSTEGSPEKSPTASTTPVDT", "length": 342 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8J8YII4-1", "protein_name": "Coiled-coil domain containing 188", "gene_name": "Ccdc188", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEGPEPLGPCGHSHTQHPPAPVSNNHGGCLNQPCQGFVRWPCLVPLQSTQSLESSRPFPAPGTGSGGPRMRGEAPGMFLSSEGEIPRQRAREPAGARQEEVEVEWDWPLHPGHEQGPPRQTAPPTSGPRPCPCPTLPPRGRATASSRQAPTQLQGGTLESAQQSFLQLEQENHSLKRQNQDLREQLGALLGPGQQFLPLCSEHSSCTALAWVSGNTRSRTHAAAPPAVHSLGPDPGALPQSPESARTRLLEDRAPVQLLRQQELCPGKESFVRQSQSELQQIRLSFERKKMAITEVWDGVAEVHMALNNQATGLLNLKKDIRGVLEQMEDIQLEILGERAQCRTQARKQQQMMEAAGLEAAAGCSAGLHSGLRVRGGPHTLRGAGATPAEPSQRLEAQGLTGSLLTPGGGRLPAFLEQKPSGPSKEARWLVLPQGLRGLTGPCLQHCGTWPLPEAAEKGGGRASPEGWACSWIYSHDTLCM", "length": 481 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8M9PVG7-1", "protein_name": "5-hydroxytryptamine receptor 7", "gene_name": "htr7a", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLGDTNRTIIAKSHGETMKSLMAEERARETGASVETFNGIMISEVLVPRLFKIAHESGEVAVAAGSGSMDMKPSSSPILLEMMEVANGTRCAEQILSYGEVEKVLIGGVLTMLTLITICGNMLVVISVCFVKKLRQPSNYLIVSLALADLSVALAVMPFVSITDLIGGRWIFGKFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGWCMAKMVLSVWLLSASITLPPLFGWAQNVNDDRVCLISQDFGYTIYSTAVAFYIPMTVMLVMYYRIFRAAKLSAAKHTITGFPRVEQEEVEEDEVEEDGGDGAEEPTGVDCVTVAIKLQREVEECARLPRILRGVGRRCSDRRSISIFKREQKAAATLGIVVGAFTICWLPFFLLSTARPFICGTECSCIPLWVERTLLWLGYANSLINPFIYAFFNRDLRTTYRSLLSCRYRNINRRLSAAGMHEALRLVERPEVVVSG", "length": 479 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8M9QGZ8-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "pimr118", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLFTVLGVIALFLRERDTNNTEEEVQNDVPPVRNSDGQEIDDWCKEPSLLEPVSVHSEEPSLEEPVSAHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLKEPVSVHSEEPSLVEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPVSVHSEEPSLEEPSLDLSFFSAESSWSEDLSSSFLTVESSWSDDLSSGFLTAESGCGDDEPLFVDSAEPEKLKEDKETQIIEINSHCYAIEAQLGEGGCGAVFSATRLEDGLQVAVKLSDFEEEKRFISVDGFEDPLPLEIALHFLANKGPKVKEIIELLDWKVEADRYFMVLEQPIPCMSLHEFLLDCEGIIPENKLRTIMYQTTVAAQTCCQRGVLHRDIKLENLLINPDTLEVKLIDFGCGDLLTEDSFQYFRGTREYFPPEFSSTGRYHGEPATVWSLGVVLFLLVFYRFPEQSDLPRMNNRRLRIKGLSRDCCDFFHGCLQLDPKDRLELQNLSSHKWIRTRTRRNDENCPNLTDGSSHSNHPITSN", "length": 567 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0WZU8-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6B2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMVVNLILGWWLVAVSRAQKLPRPSLSLHPSQGASLGDNVTLRCHLPQPAAWVRLYRYQNPTYIEQKDNVQDMAEFSLTSIKQEDAVIYQCQYQGLAPAGTSQKSDPMELLVTDHRYPPPGISLSPKEHVEMGSNITIQCWNKDYGASFLLHKGGHSAPIQHQEPDYWGTATFTLFGVTPADSGTYRCSYRIGGCCLLFSPLGDNVTLEVIPRPAPPGVNGGPSRNLVAAVAGGCAAAIVIITVSFLLVALRRQMQRAERPGATPRSPEAVQFQVSPGDSEGLTYAQLQAVTPSTHPPTSSTTPEPPIIYAEVGTRGPR", "length": 321 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEA0-1", "protein_name": "C-type lectin like 8, MHCY region", "gene_name": "YLEC8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 276 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XED4-1", "protein_name": "C-type lectin like 18, MHCY region", "gene_name": "YLEC50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTSSDPQLPEEDVQILLLESNTSTPAMGEGDQQETFSEHQAAPEPLGQSGGHQWGSWCHGMGRRRSCVQLIAVHAALGALILMLVVLVISTVCRRAPIPPFSAFGHACPNAWVGFQGKCYYLSKEENDWNSSREHCSAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKAHPQ", "length": 276 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XEJ6-1", "protein_name": "Sulfotransferase", "gene_name": "LOC769841", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVCRAAAPNSHPSTMPVHYVTYKGIKFPPAYNSVHSLSFAHNEFLVRDDDVFNITYPKSGTVWMTEILSLIRSHGHPSWNQTVLNSDRMPWFSTRLGLEAALSYPSPRLLTCHLPRHIFPKSFSHSTAKVIYTLRDPRDVVVSYFYFCKMCNSYEDPVSFEQFLRDFLSGELPHGSWFEHVRGWMQMKDRENFFFITYEELKQDLQGSVRRLCHFLGQNLDDDAISSVVQNASFMAMRQNPMCSSILLPADIMDQTKGQFLRKGICGDWKNHFTVAQTETFNRIYLEKMRGLNVAFPWDRDQDPDLTEQ", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGU1-1", "protein_name": "C-type lectin domain-containing protein", "gene_name": "YLEC62", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQSVQIPILKHKVSTPAEGERLNHFSEHKAAPEPTAHQRRRIPTGSDPQLPEEDVHISVLESNTSTPAMGEGDQQETFLEHKAVTEPLGQSGEKPQWGSRCHGTGRRRSRVQLIAVHAAVGALILMLVVLVISTVCRRASIPPFSAFGHACPNAWVGFQGKCYYFSKEENDWNSSREHCNAHGASLATIGSAEEMDFMMRFQGPANCWIGLHREEEDAQWTWSDGTAFTNWFELRGGGRCAYLNGDRISSSLCHLHKHWVCSRADHYVLWKQKVHPQ", "length": 277 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XGW1-1", "protein_name": "NHL repeat-containing protein 3", "gene_name": "NHLRC3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAAPAVLWRLQRLSAAERLEARLSGAVRKEPGRGEARQSEKKPHSPHCPLRCSYACPGRTPMTSESGRKALSHLGRQQQCLNKMAELRARLEAFPAPECLFKTLNPFMGFLRLFFAPQPLGGEQALFRAAQCAEASPRIPAPQAWAGRSRGCHGNAARPASMGRKQAVGPRLVMAGALLTLLGLLWGSQMLKAFDYFSSWKGDGEQQMYKLDISWPKIPEYFSGQTFCVAVDSLHGLVYVGQRGDDIPKVLVFSVEGYFLYSWNDTVEMPHGIFVLNTATDSSVWITDVGSGKYGHTVKQYSPSGKLLQVLGTPGNAGSSLNPLQFDQPAEIFVEESGEMYIVDGDGGMNNRLLKLSQDYKEIWLSGENGTGIGQFKIPHSVTVDPFGRVWVADRDNRRIQVFDKVTGEWLGAWSSCFLEDGPYSVRFTGNYKYLIVAHLNINRLAILAAPPVGEIGDCAIVSTIQLADETKPHLVDVDVKSGAIYIAEIGAQQVQRFVPLS", "length": 502 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPN1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR2A13", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPMAVALILGWWLVAASRAQQLPRPSLSLHPSQGVSLGDNVTLRCHLPRPAAWVWLYLEGRWSYAKYIDKKQDTTEFSFLSASHDQAGTYLCQYQVSESEDVSVTSDPVKLVLTDRSFPPPHISLHPEERVGTGTNVTICCWNKDYGATFLLHKDGRSDPIQRLVPDDVGAVSFTLFGVTPADSGTYRCSYHPKNYPFLSSPLGDSVTLEVTPTPAPPGAELVSRGNLVVAVVRGCAAALIFGLGVFFVIDARSLWIRRDESLGGEGI", "length": 269 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XPP6-1", "protein_name": "SUN domain-containing protein", "gene_name": "LOC776146", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEQQGHGERGNWQTKVWKTVALVLVTVAVASFGVYCVGGLVEGIKTTAGVTARLVRRDGEIVSLDEELAKVQRQLHVLQWRARDITERALHEALRRTELPGFTGEAVQKIIHQVLEKLEESPFQMTNYASKTSGAAIVRSKTSPSWIGSGRVFWQSLPLVAYMRPPEVILEPDNHPGNCWPFPGSQGHVFIKLPVAVFPTAVTINHGVPAAAYHADSISSAPKDFAVYGLQEEDDETGTLLGEFIFMPGQAPGQTFQLKNEHSAFIKYVRLQVLSNWGHPEYTCVYQFRLHGDPAPDGDARGKLSA", "length": 306 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XQE0-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "CHIR6A8", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEPMAVNLILGWWLVAGSRAQQLPRPSLSLHPSRGVSLGNLVTLRCHLPRLAAWVWLYRGGGWSYKKGKKKEQDAAEFSFASTLREHAGRYRCQYRVYESAEVSVESDPVELVLTDVRYPPSSISLQPEQHVGTGTSVTIHCWNKDYGATFFLHKDGSSDPLQRQDSSGGGTATFTLFGVTPADSGTYRCSYRHWRYAFMSSPLGDSVMLEVTPTPAPPGAELVSRGNLVVAVVRGCAAVLIFALGVFFVIDARSLWIGRDESLGGKGI", "length": 269 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0XTD2-1", "protein_name": "Coiled-coil domain containing 97", "gene_name": "CCDC97", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKEDPKEAEGPTASKWIPIASNGNPTASKWIPIASNGDPTAPKWVPISSNGDPNWVPISSNRDPMASKWIPVSSDRDPTVTKENPPSSNETPAAEWDPKVPPEGRPVEEGDPKASPTEDPPAEPDPKASNCAPLSSHWAPEAAVWDPTSPHRDPTAEPQCSASPEQHRAAQRDPASPMEEDRYPATHGVRPATRADPAPYGDHPEAEEDPLPAAVEAMLAAVAASPVRVRSQQQGDPELTAAERRRDLRALFLRKPLVFLERFHGALQAEHLPCFAHLPPRYEVAFYCRQVRARRQQNPQTGLSRWPRRPGARTRLRNRRYAALRQLIAGGEYFSEEEMRAREPLLYEHYIGQYRDAETPPGTPPCPPHPGTPPGTTWAAALLRSVEEAAVQQRLQRQRLREGDSGEEDEDEDEAEEPHIPDAGELEVLREEFRSRMYQRFLDGEDRDFDYSQVDENPDMDNLDIESRDAEERYFDEEEPSAAPQLE", "length": 487 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Y889-1", "protein_name": "Transmembrane protein 65", "gene_name": "TMEM65", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWLGRAVLLLGRPGGPAAPSSSSRLCSLRGPPRCCCRRRLSSLRGGADGLLPARGAPPGRALGTHPKKEPMEALNTAQGARDFIYSLHSTERSCLLRELHRFESIAIAQDPIAARASCQQYGETWAHQEPSGACSSVHSQAYHQKEAVPSSNCPSTKYDRTHYLWPPLMAEAAGKPGRCPHCCAEGWSSEKLEVAPPSPGQLRHVFFHNALPFVGFGFLDNAIMIAAGTQIELSIGVVLGISTMAAAALGNLVSDLAGLGLAGYVEALASRLGLSIPDLTPKQADMWQTRLSAHLGKAIGVTVGCILGMFPLLFFGDEEEKLEEKN", "length": 328 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YA34-1", "protein_name": "SWIM-type domain-containing protein", "gene_name": "LOC100859602", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAERGQLPPYAKRLCCRPGYGSGCRLGQQAGDTGPGSGTFCAGPSSAAAAAAAAAAATAASLVLLPLGKTQSPESLLDIAARKVAEKWPFQRVEEQFERIPEPVQRRIVYWSFPRSEREICMYSSFDTGAEGFTAPGSAAGNTASGGAVDAVADENRLPFRRGMALLDGGCVDNVLQVGFHLSGTVTEPAMQSEPETVFNVAISFDRCKITSVTCSCGNKDIFYCAHVVALSLYRIRKPDQVKLHLPISETLFQMNRDQLQKFVQYLITVHHTEVLPTAQKLADEILSQNSEISQVHGAPDPTAGASIDDENCWHLDEEQVQEQVKLFLSQGGYHGSGKQLNLLFAKVREMLKMRDSNGARMLTLITDQFMADPRLLLWRQQGTAMTDKYRQLWDELGALWMCIVLNPHCKLEQKTSWLKQLKKWNCVDVCPWEDGNHGNELPNLTNALPQGANANQDSSNRPHRTVFTRAIEACDLHWQDSHLLHIISSDLYTNYCYHDDTESSLFDSHGWPLWHEHVPTACARVDALRSHGYSREALRLAIAIVNTLRRQQQKQLEMFQARKKELLYRGITSITNLEGWVGHPLDPIGTLFSSLMEACRVDDDNFHGFSDFMENTSQHKSLEYQHLPAHKFLEEGESYLMLAVEVALIGLGQQRIMPDGLYAQEKVCRNEEQLISKLQEIELDDTLVKIFRKQAVFLLEAGPYSGLGEVIHRESVPMHTFAKYLFTSLLPHDAELAYKITLRAMRLLVLESTAPSGDMSHPHHIASIVPNRYPRWFNLSHIESQQCELASTMLSAAKGDVQRLETVLQSIQKNIHSSSHIFKLAQDAFKIATLTDSLPDITLLKVSLELGLQVMRMTLSTLNWRRREMVRWLVTCATELGVHALDSIMQNWFTLFTPTEATSIVATTVMSNSTIVRLHLDCLQQEKLAGSARTLALQCAMKDPQNCALSALTLCEKDHIAFETAYQIVLDAATTGMSYSQLFTIARYMEHRGYPMRAYKLATLAMTHLNLSYNQDTHPAINDVLWACALSHSLGKNELAAIIPLVVKSVKCATVLSDILRRCTLTTPGMVGLQGRRNSVKLMSLDKAPLRQLLDATIGAYINTTHSRLTHISPRHYGEFIEFLSKARETFLMSHDGQIQFTQFINNLKQIYKGKKKLMMLVRERFG", "length": 1168 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0YDY5-1", "protein_name": "SKA complex subunit 1", "gene_name": "SKA1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEGLEALSRHLAAKIGLIKRLLQLRGLGRREMLAEVGMEVAVLHGLLGRMEEEVNQRRQLAAALQEMRKRAEKEKWEAERLQLVKKAAKEAPLVNDAPLISDEEFESVPGYMRGRLTLAQTNAALRALHAAAASKYRLLRHPPKSLPSSSRALCHRFREEETKETQGLTFVVEADLKEFTQLKVDRTFHRIVGVLRHCRRLREVRGARLVRYVLP", "length": 217 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0Z0M2-1", "protein_name": "Tumor necrosis factor ligand superfamily member 10", "gene_name": "TNFSF10", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLPAGGPSPAHTCGAVLVAAVLLQSVCVAVTYIYFTNELKQFANADLVHSCERGHPLSPPPPPDVPQTAVTRPTKAEGGAAPVGASCSIGQSRRAQSDLRQRAANAASPQHGPPCAARSRARCSCPRCTAGPRVCRRTQQKLWDTYSRSGTACLTGEELGDLIQNLDVVESKDRVADPCWQVKWHLGKLIKKMMSRILQENMSAINGDRTQALPRRDEPPQGPTLRIAAHLTGSSKRSSASPHIDYLSYRGIGHKIHSWESSRRGHSFLYNVELWNGELVVPQTGFYYIYSQTYFRFRENEDEDSGLLERIKNPKQLVQYIYKLTNYPDPILLMKSARTSCWSKKAEYGLYSIYQGGVFQLKREDRIFVSVSNSDIVDMDKEASFFGAFMIS", "length": 392 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZCD9-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418390", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMSALLFTLLHYWKIWFCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEREEQQEQVEEEEQLERVEELEQEDQVEHVEQEEQEEREDQGEQVQQEEQVEEVEQEDEEEEYFHHSALTRYIARRAWEKMQGKATKCVLVEELMSDLLQTYTFVCSNSFYPVLQPAIGVGSAFEGWSPCEEDIVYRLLVPIKAPHGHVFHPELGEEGEVLARNSRIRVELVCMCTREQQLGDVLCFLHHSEEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRTWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAVFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKVLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRVLRDFKELKDRLFRLLLFGR", "length": 542 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZD85-1", "protein_name": "Mab-21-like HhH/H2TH-like domain-containing protein", "gene_name": "LOC124418382", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MALVLVLALLVRALIVSGSDHAVMLERVQQHEKEQRNGEQSWVDMPALLFTLLHYWKIWLCTGLFVFLFWNMWRSLKRKQHEEGGQQEQQEREEQVEEVEPEEQQEQVEQEEQLERVEELERVDQVEHVEQEEREDQGEQVQQEEQVEEVEREDEEDEYFYHSALTRYIARRAWEKMQGRATKCVLVEELMRDLLQTFTFVCPNSFYPVLQPAIGVGSAFEGWSPCEEDIVYHLLVPIKAPHGHVFHPELGEEGDMLARNSRIRVELVCMCTREQQLGDVLCFLHHSQEELSQNQQPSLLQTLCTGSYLDVQKTAAWFNKQVPRIWRLTHRAHRYGLKVLPSSRSCKLQVTDTSSGEKVHVELLFGVQQGNLDIFLSSQNAEAIFTPSTTWPQSCAVAERKYFEYVARTAGPNSCHLVCLRLFAHILVGMGFSTYAIKTLLLHLLAIIPLEDWRRRHFLSRLENLLQYLQYCLNDKLLNHFLLGNATMPDEVVLPQAFQTASPLNLFQHLEQDPDAHSRALRDFKELKDRLFRLLLFGR", "length": 539 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZE07-1", "protein_name": "LIM domain only 1", "gene_name": "LIMO1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVLDKEDGVPMLSVQPKGKQKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFGTTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRDSNPMGWYGSHPVTAAWEAEARTTSLGQPGVRAAELP", "length": 158 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZGC1-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "LOC124416945", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MVAGSPALLLLLSLGLCFTGAQGQGNTMAVSFLNRSMKHPKEGQRLGLECHTYKTSWGVSWIRLDKDGNLHFIVYISKFSSTTFPGNKGASSQFEVSKQGSSYRLTVKNFRAQDQGIYFCIANINQVLHFSSGQRAFFPVTTTTAAPTTLRAVTLTATTQSSQVTMKDISQHSPDPGRSKENMPNFCCKLVMWVNLACACLLLLTAITITTTHCQRPSSP", "length": 220 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V0ZPB4-1", "protein_name": "trypsin", "gene_name": "LOC107049069", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MKFLVLVAFVGVAVAFPIRDEDDDKIVGGYSCARSAAPYQVSLNSGCHFCGGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSGYNANTLNNDTMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGFGCAQKGYPGVYTKVCNYVSWIKTTMSSN", "length": 248 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A1Z3-1", "protein_name": "Bridging integrator 2", "gene_name": "BIN2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPSLYHPNAIPVPFPSHPCTTLMSSLTHHIIPVPSSCLPNVIPIPYHPHVISTLSLLHPHFIPMAFLNLPHAIPVPPLIHSCAVPMSYHPFPISFSFPSPSHPSIAPMQSPSYPYPTPVPPPFHLLPIPIPTPVPPPCHSCSIPIQPRCRLHAILVPFPPHCHPHPVPAPSPPHPSAIPMPSHFHPHPIPVPPHTISIPSPPQCHLHAIPVPSPTHPHPIPSHPRFPHPLWAQGHPHPRGSNLSPPIPPPPPNTFALQNEGNKLYKDLKAFVGAVKVMHESSRKVAETLQEIYSTEWDGHVELKAIADSNDLLWDDYEAKLGDQALRLMENYLAQFGDIKERIAKRGRKLVDYDSARHHLEALQNAKKKDEAKIAKAEEEFNRAQAVFEELNRELREELPVLYGSRIACYVTIFQNISNLRDIFYKEMSKLNRDLYEVMGKLDKQHSSKVFIIKGVPSKRRSLLISAPVSPPAAYPCPGKAPNWDPSSGAEQTPTSPRVGSDATEDVPNGLAAPGPAEPGAPMPGPPPASPTSVRSASESESECSEESREIDLSPKEMEVSVGSGCPEYPKTEGAAKGEVEGIAASMASMIVSEAIAAATGAAPGDSDGVGGGDSTDSEISPAEGAWGGPSPGGSEERVEGTDVSPEVGSDAGPCEHGTPEPPQQDVSCDPPQDPSESLTPL", "length": 682 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1A7J1-1", "protein_name": "Mitochondrial transcription termination factor 4", "gene_name": "MTERF4", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAGRLLGLLRARAPRAVLPAPGPASRHRCGTAGPEEGEAAELLAMGFSQAQARRLRLLRPGLEPQRRAEAAAQLLLLGLSAEAALGLLERSPGLLRMETARLKERAEYLRRLGLEGERGGPLPRGVHAAPAEDGGGGAAAAGAVSVHGRAADRAAAELPRGAAGGAGPRAAPLPGAGRRAGRSGGVAGAARPALSSARLHAQYAYFRMGVRQKEMVKARLFRTPFAELRNRHVFLERRGLYRTPHKGQSQSGNPALRDVLRPTEGDFVAGVARASPDEYEVFKRLLAREEEEMEEEEEEDEEEEEEEEGSAALHAEGGDRDWHSSEPSPIAPCPPAPQ", "length": 338 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AKD9-1", "protein_name": "Borealin", "gene_name": "LOC121107214", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAPARRKAAAGARGRKLSAFLKDFDREVRSRVEQLRTNGERLVKEMENLYDVELLRLPAALREMNWLEFFAKGGSQKVVEEAVTADLGITEINKLTAELIQTPLKIVTKEKSKQGIEATEEAAEVPLLPPAKKAKHDSQLLLEQAAASTNPRNGKVRTSTKKAPVSRSRRAPSARVKRVSKRSSKSSFITPATGRNLDLCARGGASIVTPRFDSRVFKTPGLRTPAVNERVYTISANGSPLADGNDVFITVPVGGGESIRLTASDLTKKNLLHLNPEARGIMKKLSVRLAQACSSAKTHR", "length": 300 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8V1AMC7-1", "protein_name": "ODF3A protein", "gene_name": "LOC121107218", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPASMDGAWVGTWRPHRPRGLISAQFPSPGPQYSIPGTTGYVGHSPTKARAPAYTFRGTKPPAAGSCGPGPCYFVEPAITRNGKYVAPGAQLRGRPVTKTTVTPGPSDYRTEAANRHVFKCPPVQSMAFRREPLRTDHPPGPGTYTLPRLMGPNTVYTSASPCYSVRGRSQRGRFDEDLAKTPGPAALPKVPVDAYKTRAPAYTMAARPKAGEGKAAKPGPADYSVGRVTLIKPQAPASTFGIRHSLYTTPLIVE", "length": 255 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4F7J1-1", "protein_name": "40S ribosomal protein S26", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQPIHCTNCARCMPKDKAIEKFIIRNIVEAAAVGVISEVSVFAAYVLPKLYAKRHYCESCAIHSKVIRNRSREAQKVRTPPPRFRPTGAALRPPPKCM", "length": 98 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F8K9-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258234", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTVTTFILLGLTDEPQLKTLVFIFLFLTYMLSVTGNIISLTSTDSHLKTAMYFFLQNFSFLEIAFTSACIPKYLYNIATGDKTITYNSCATQLFFTDLFAVTEFFLLATMSYDRYVAICKPLHYVTIVNHTVCRRLIFGSWLAGLLIIIPPLSLGLKLEFCDSNVIDHFVCDAAPLLKISCSETWLIEQMVIVCAVLTFIMTLMCVVLSYVHILKTILQFPSAQQRKKAFSTCSSHMIMVSISYGSCIFIYVKPSPKDSLAVNKGVTILTTSIAPMLNPFIYTLRNKQVKQAFNDAIKRIALFSKN", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4F9E2-1", "protein_name": "UPAR/Ly6 domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "RLEFSSLSPAEVPLVAAAGGRGAFDMRCHECDTKNTFACDHIVTCPRGIRRCLTLSIRLSSREIYVYKGCTRNCTFIYADEQPPPGERKPPRSNSLYFVQCCNAITCNRGGPINLEKDITPPLILEEELGGTVRLGEATLFLSVASVLVSHALT", "length": 154 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBC5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MLTHSFSFFSSSSSSSTYSSSYPLLPLLLQPQNQFRIWALKDYGQRNSTSLHDFILLGVVATFYLITLVGNTAIILASLLDSHLHTPMYFFLRNLSFLDLCFTTSIVPQMLLYVYMWLGSIECLLLAVMSYDRFTAICKPLHYLVIMNPHLCLKMIIMVWSISLANSVVLCTLTLNLPRCGNNLLDHFLCELPAMLKIACIDTTAVELSVFALGIAIVLTPLILILISYGYIAKAVLRMKSTAGQRKAINTCGSHLTVVSIFYGAIIYLYLQPGNSASKDQGKFLTLFYTIITPSLNPLIYTLRNKDMKEALKKLMRVDHKSTKSKRTWKS", "length": 331 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FBS2-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258626", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRNHTAITTFILLGLTEDPQLQLLLFLFLFLTYILSVAGNLTIITLTLLDPHLKTPMYFFLQNFSLLEISFTTACIPRFLYSISTGDRTITYNTCFTQLFLTDLFVITEFFLLATMAYDRYVAICKPLHYMTIMSNKLCKTMVVCCWLAALLIILPPFSLCFHLEFCDSNLIDHFACDASPLLKISCSDTWLIEQMVIACAVLTFIITLVGVVLSYIYIIRTILKFPSAQQRKKAFSTCSSHMIVVSITYGSCIFIYINPSAKEEVNLNKSVSLLISPISPVLNPFIYTLRNKQVKQALHDSLKKTAFLLRK", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FCJ2-1", "protein_name": "Histone H2A", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRKRNLPQCNPPKKQALSRSSRAELQFPVSRVDRYLREGRYAQRLSSHTPVFLAGVLEYLTANILELAAGEAHSSRKMRIAPEHVQRARSHNETLSSLFQASSVSRGAEEEAEEPLPEAGR", "length": 122 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FD42-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFIILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLNCCITQLFFIHSIFVFESGLLLVMAFDRYVAICYPLRYTTILTHPLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLLLDILLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVCIIILFYGPGIFTALTQRFGRHIPAHIHILLANVCILVPPMLNPIIYGIKTKAIQEQVALILFPKYR", "length": 314 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FH98-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "VCHYGNYYSGLSCSCGYGCGYSRCGCNCDYDKCGYRCGYGGYVYGCCHLSCCGRYRPYGFY", "length": 61 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FHY5-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "DTGSCGAIVLTQTPLSLSVSPGEPASISCRSSQSLEEYGKNWLSWYQQKPGQSPRLLIYQATNRASWVPERFSGSGSGTDFTLKISRVEAEDAGVYYCQQYKEFPPTVIQPLTQTPLLGAQLHTWLCVVWGAEGQKL", "length": 137 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FIZ4-1", "protein_name": "Envelope glycoprotein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRPTLSRRHLPTRGGEPKRLRIPLSFASITWFLTLTITPQASSKRLVDSLTSPKPLSLTWLLTDSSTGITINSTQREAPLGTWWPELHVCLRLVIPGLNTMSTPPDILRAYGFYVCPGPPNNEEYCGNPRDFFCKKWSCVTSNDGYWKWPTSRQDRVTFSFVNSYTSYNQFNYGHGRWKDWQRQTQNRQISCSPSDLDYLKISFTEKGKRENIQKWINGMSWGVVYYRGSWGGEGSILTIRLRIETQMEPPVAVGPNKVLTEQGPPIQGQRPSPNPSDFNTTSG", "length": 284 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJ61-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSTKNKHLMKGSKKGPKKKVADPFSKKDWYDGKAPAMLTKKRNIRKTLVTGTQRTKITSDGLKGHVFSSEPCQSAE", "length": 77 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FJT7-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKNPEVRKIHSAVFLITYLSTILGNLLIVVTMVTSQSLRSPMYFFLTSLSLMYVTYSSVIAPKMIVDSFSETTAISLEGCMAQLFAEHFFGGVGIILIIVMAYDHYVVCCLLLGGAWVGGSIHATIQLLFICQTPFCGPNVIDCFMCDLFTLLKLACMDTHLLGILVILNSGVMCMAIILILITSYVVILCSLKSYSFEGQHKALSTCGSHLIVVVLFFVPCIFLYVMPVATYPIDKAMAVSFTIVAPMLNPLTCTLRNAEVNNAMRKLWMKQNTLCYH", "length": 279 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKQ6-1", "protein_name": "Large ribosomal subunit protein uL5", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVQDQDEKKNPMWELGIHKLCLNICEGESGNRLTRAAEVLKQLTGQSPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEIFERHLRVREYKVQEHISLGTKYDPSIGIYSLDFYVVLGRPGFSFADKKHRTGCIGAKHGISKEDAMSWFQQKYDEIILPGK", "length": 163 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FKY3-1", "protein_name": "Large ribosomal subunit protein eL27", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGKFVKPGKVVLVLAGRYSGRKAVIVKNTDDGTSDQPYSHALVAGIDRYPRKVTAAMGKKKIAKSSKIQSFVKYSVDIPLHKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKCFFQKLRF", "length": 125 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FLM5-1", "protein_name": "Small ribosomal subunit protein uS14", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGHQQLYWSHLRKFGQGSRSCCVCSNWHGLIRKYSLDMCHQRFCQHMKDPGFIRLD", "length": 56 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FNC8-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGQRNQTSSLADFILEGLFDDSPAHAFLFSLTMVVFLIAVSGNTLTILLICADPRLHTPMYVLLTNYLSGTKSISFVGCATQYFLFLSLGCAECILLTFMSYDRYVAICHPLRYAVLMNRKVGQMMAVMSWLGASVNSLIHTVILMHFPFCGHRNIHHFYCEFPAVVQLVCGDITVYEIAVYIGDIVLLLLPIALISASYVFILHSVIRMHSAGGKRNAFATCSSHLTVVSLWFGACIFSYMRPRSQRTPLQDKVGSVFYTIITPTLNPLIYTLRNKDIAKALKRVLGREMITQNPKVRLP", "length": 301 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP10-1", "protein_name": "Ribosomal protein L19", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSVLRLQKRLASSVLRCGKKKVWLDPDETREIANAKSRQQIWKLIKDGLSIQKPGTVHSRARCQKNTLRKGTASAGMPKKSVPERDGNVFKNKRILMEHTHQLKADKARKKLLADQPEARRSKTKEARKRRQERLQAKKEERNRTEVETKFCRLI", "length": 155 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FP36-1", "protein_name": "Small ribosomal subunit protein eS24", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MQDTASIRTRKFRTNQLLPGKQRVIRVLHPGKATVPKTEIWGKLAKMNKRTPDVIFVFGFRTHFGGGKTTGFGMSHDSLDDYTKTNEPKHKRARHGLYEKSKTSRKQRKERKNRMKKVGGTAKANAGAGQKGGV", "length": 134 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8W4FQE1-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTALNHTGVSHTVFYLLGIPGLEDQHLWISIPFFISYVTALLGNSLLIFLILTRRSLHEPMFLFLCMLAGADLVLSTCTVPQALAIFWFRAGEISLDRCITQLFFIHSIFIFESGLLLVMAFDRYVAICYPLRYTTILTHTLIGKIGVTIVLRSYCAIFPIIFLLKRLTFCRSNVLPHTGCEHIGLAKYACNDIRVNIWYGLFVIVSTLFLDVLLIFVSYMLILHAVFHMPSQDARHKALNTCGSHVSVIILFYGPGFFTTLTQRFGRHIPAHIHILLANVCVLVPPMLNPIIYGIKTKAIREQVAHLLFPKQK", "length": 314 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A9J7F7T0-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "LOC100757015", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDYVMQFVEPSGQFVKDSIWLVKRCTKLDRKEFQKVAMSTAMVFAIMGFTGFVKLIHIPVNNIIVGG", "length": 67 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GY23-1", "protein_name": "Tetratricopeptide repeat protein 16 isoform X2", "gene_name": "Ttc16", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MTDSSTEESVNVQTQKIPKLQVPETRETTLQRIFGTSQVFYSVSGVVKPRLTESTVPFRVREYYHQGHHCLEQEDWEMAVLYFSRALHLNPDQVEFYIFRAEAFIQLCDFSSALQNLRRAYSYEPENSKYLERLAFVLYLQGQCLYELCDFQEALYVFLQASDLQPQNPSFSYRCMACLLALNRHQDCLSLVTREVKQGRATADVYILRARIYNFFQKPKLCYQDLRSALLFNPKHPQAKGLLQVMVDQAKKSLQDASILAVQGKLHRALKRISCAIENNPLDPNLFLFRGTLHRRLQQFDPAVEDFLKAMDMVTDSQDNLVQKTQRQLLLTYNDFAVHCYTQGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALELCPKDEGANLRMGVLQEKMGLCEQTRRQFQKAEDHFSAAIKYNPVNAQYYLHRAKNRQLLQNIVGACQDIATVLLLNPKYPKMAPLMAKLFPGMSVEEVLNSHVAQLAKLQLRRMIESGPKASHPQSIVAKRLIERQKAQALMESWNWEQLFTRNPEEEVAPSESLQGKTLREKIEFKREVVEEKKVKILRKVTSLSDSYVDQTSSGSEFSILSPSTLETEVSTMEYKSTSNTAASSAERLLPQYLVTTKYKESLGLSMAPNVTQVSEDLHKSLTENIPDDGPRHHSSKAEATQRPKPRKTEPSQSLGKQRPSQRPSITEATKGPKPRKNRPALSPRQRLRRAKAVQAQNWKPRTNSNSQKTSSLLSNIAVIISSSNEAQDQSPVPSKADDISSYNDSTATSSTNTDSLRLSIHLSKPKYSKDQSPSHNKEEVSPTSNNYAAP", "length": 835 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7GZF8-1", "protein_name": "Protein EURL homolog isoform X2", "gene_name": "C4H21orf91", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MIIKRKATVIHHKGTMNEEEQFVNIDLNDDNICSVCKLGTDKETLSFCHICFELNLEGVPKSNLLHTRSLRGHKDCFEKYHLIANQDCSRSKLSKSTYEGVKTLLTKKINWIVQYAQNKDMDLDSECSKNTRHHLFNFRHKPDKKLLPQFDSQVPKYSVKGIAGSTGGLSSYTQRILEQRENTDFGLAILQDSDALWPHKHNQAQKKEETSSGPENVQTQNPRYSREELNSMTLDEVEQLNTKLQQQIQEVFEELTHQVQEKDSLASELHVRHVAIEQLLKNYSKLPCLQVGRAGPRSHLPINN", "length": 304 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0A9J7JMJ4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100771730", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDFVNISLVTEFFLVGLTDQPELQMPLFFLFLAVYLITALGNLCLIILTVLNSNLHTPMYFFLFNLSFIDICYCSVFTPQMLMNFILRENIISYMECMAQVFFFCFFVVSECYVLTSMAYDRYMAIYNPLLYNVVMSPNLCLNLMFGSYFIGFSNAVAHTVCMLRLTFCDTNIINHYFCDIPPLLQLSCTSTYVNKLVIFVFASINIIVPTSTILVSYGFILSSIFHISSSEGRSKAFSTCSSHIIAVSLFFGSGALVYFKPSSAVYMNEGKISSVFYTNVVPMLNPLIYSLRNKDIKVALMKSLNSRNL", "length": 310 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "A0AA74KSW7-1", "protein_name": "Predicted gene 3002", "gene_name": "Gm3002", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLNSSKLGVWAAGVPPSSPTLLFRRWVMKVESLISQPMTSGKNELQDHLIFISEKALHKRLFQKENGDEGVTRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSPAESRTWHRPGHDLPQREVLEEEH", "length": 280 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A0AAA9RU54-1", "protein_name": "Small integral membrane protein 17", "gene_name": "SMIM17", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQSLRPEQVRGLLEPERAKTLLPRENKAWEKRAAFAKDWVAVEVGASGCGSDEKDLPSPKTLVPQEWSSVEEDDESEDSQPHWAAALPTSPSCPSQDTGTGSGADLCLQCSSPRTPPWLPWAFSHTIESALPTPPRAWLWSLL", "length": 143 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0AAA9RY85-1", "protein_name": "Core Histone H2A/H2B/H3 domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNMPEPAKSAPAPKKGSKKAVTKAQKKDSKKRKRSRKESYSVYVYKVLKQVHPDTGISSKALGIMNSFLNDIFERITGKTSRLVHYNKRSTITSREIQTTVRLLLPGELAKHAESEGTKAVTSIPALSKYNMPSRC", "length": 136 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0ABK0KVZ2-1", "protein_name": "Eukaryotic translation initiation factor 1", "gene_name": "Eif1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "EFGFRSVASAGWGAACPLGLRHVISCGGRAGLEQKARALSSSSTGLFPEGQQRAPPDFSDDICTDKKKNQERGINKWPTTTRNKNYFFVDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLIEIGLAKDDQLKVHGF", "length": 192 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0L002-1", "protein_name": "Oocyte specific homeobox 2 like 1", "gene_name": "Obox2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ILQSVQNTDMIEGPSFLPKFQMSSYTPMDTSSQLPQEPSWNLAFQMGQSPLVTSRTPMQSSPSVPEQNLNWQESQGSSRESSIQMQPGPVMDPGFPTLRSPSGHPSHQRPSRPSSRSGFHVPIEPMALSDKHGGKQTGPVAPRKCRKERTQYSAKQKSVLQEHFAECQYPDKKLCLELATLFGVTENEIKVWFKNNRAKCKQKNVPEALPETNGGPEAVSWSTDFPGSIAVVGCDQGEPMATAILDVDSTPKLNCSQESSLDGNWTYDGAMCCLPEDVLDGNDPVTAGDSGESAPVEAQSDLAAAGAPVAMAVDTQNPEECEDLPLLDEGVWQWMLEDFHQLEDWFTKNYIESPSSASHPLD", "length": 362 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LHI6-1", "protein_name": "CD27 antigen", "gene_name": "Cd27", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAWPPLYWLCMLGTLVGLLATPAPNNCPDRHYWIGAGLCCQMCGPGTFLVKHCDQDRAAAQCDPCIPGTSFSPDYHTRPHCESCRHCNSGFLIRNCTVTANAECTCSKGWQCRDQECTECDPPLNPALTSQPSEAPSPQLPPPTHLPYATEKPSWPPQRQLPDSTVYSRLPSQRPLCSSDCIRIFVTFSSMLLVFVLGGILFFHQRRNHGPNEDSQAVPEELCPYSCPREEEGSVIPIQEDYRKPEPASYP", "length": 251 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0LYA6-1", "protein_name": "Prostate and testis expressed 2", "gene_name": "Pate2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLSCLTSELQGSACLCLPSTGSYKHILQHLDLGTMCYKCKKYHLGLCYGLMRSCTLKHRQSCAAENFYILTNRGQSMYHYSRLSCMTNCEDINFLSFERRTELICCKHSSYCNLPMGL", "length": 118 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0ABK0M6C3-1", "protein_name": "Prohibitin", "gene_name": "AABR07037878.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYNKNIKNSISISVCVGGVGGVRARAHAHAHTSPHACTRVIHAFVMLEVGPRDFVHIKKAFRGIDVKKPVIFDCRSQPRNVPVVTGSKDLQNVNITLRILFRPVTSQLPRIYTSIGLDYAERVLPSITSEILKSVVARFNAEELITQRELVSKQVSDDLTERAATFGLILDDVSLTHLTFGKEFTEAVEAKQVAQQEAETARFVVEKAEHQKAAAIISAEGDAKAAELIANSLATAGDGLIELRKLEAAEDIAYQLSSSQNITYLPVGPSSVGPSVRQSMFLRLPQ", "length": 286 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0AC58FXL6-1", "protein_name": "Cytochrome P450 2X10.2 isoform X2", "gene_name": "cyp2x10.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSDLRGIYSYMLSTVNSLVRDSSLTNFKKEFCVHAYLLSVCIQYQSSVWSSSRSVTMLTALVLLCLGAFLLYLQLRIRRPKNFPPGPAPVPIFGNLLQLNRISPLKDFDKFAQHYGSIYGIYIGSQPAVVLTGQKMIKEALITQAAEFSGRSNNMMFSHVTGGKGVIMADYGESWREHRRFALTTLRNFGLGKKSMEQRILEEVKHICLLLEESAGKSIDPQHLYHQAASNIIASVIFGSRFNYKDAYFQTLITSVEDLTKITIGPWAMLYEIAPVLRIFPLPFQKAFQYFEQITKHVLKVVEEHKTSRVAGEPRDLIDCYLEEMENKSDHRTSFDESQMVTLLFDLFIAGTETTSNTLRTLTLYLMTYTHIQEQCQREIDEVLGARDHVTYEDRNAMHFVQAVIHEGQRVADIAPLSMFHSAKTDTQLRGYSIPKGTIIIPYLSSSLREEGQWKFPHEFNPQNFLNEKGEFVKNDAFMPFSAGPRVCLGENLARMELFLILVTVLRRFRLVWPKDAGEPDFTYIYGGTQSVKPYRVIVEPRMHGEACKFVD", "length": 552 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58J797-1", "protein_name": "Uncharacterized protein isoform X1", "gene_name": "si:dkey-233e3.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANAKQLLKNSLDELVEAELKEFQWYLINDHRDISKAEMEKADRLKTVDKMVSCFGPKGAVKTTVDILRKINQNELAEELENKHKQGNCMSARAEGAVLETCKSPPFDYTNTSRELKKKLKEDYEKILVGNSQTGHKKYLEDIYTDLYVVENETGGRERQHEVIQMESKHNQQDRPLKCNDMFKVQPDTGRKHRRILTLGIAGVGKTVSVNKFILDWAEGKDNQEIVFIFPLPFRRLNLIKEEKYSLIGLLNKYFFSISGGLSSLPEKQGKVMFIFDGLDEYRFKLNFKKDDGFTDVNKEMTVSEIITNLLKRHLVPSSLMWITSRPAASSLIPRDLIDQVTEVRGFIDEQKEHYFIKNSSPEVARNIIGHIKKSRSLYIMCHIPVFCLISLTVLQPLLGQESNEKTPTTLTGMYINFLLSQKQQMKEKYRNDTESEANACSFDEIVLKLGKLAFKQLQKGQLIFYKTDLEKCGLDVRQGSVFSGLCTRMFQEENHYSGEQVYSFVHLSVQEFIAALYVFFTYKNKKANLFLDSWKKELKWKLSEKPLFKLHTAAVKKTLQSKNGHLDLFLRFLMGLSLESNQSDMKELLPWLKLKTGMIKDTTDYIKKKIEEENSAERTINLFHCLNELNDDFVEELQKSLCSGNLTAQDLSSAQWSGLVFVLLMSEETQEKFELQKYRRSDEALMRLIPVVKNTTRALLQCCNLTAQSCESLSSALQSSNCVLRELDLSNNDLQDSGVNLLSNGLKSPKCKLEILRLSGCMVTEEGCGFLSSALTSNPSHLRELDLSYNHPGDSGLKLLSQKLEDPNYTLNKLNLDHGGEKWFTAGLHKYACFLTLAPNTAHIELRLSEENRRVTRVGERQQYPDHPDRFDHHAHVLCRESVCGRCYWEIEMNAGDRVDIAVSYKSIKRKGRGYECVLGQNAQSWALICYVNRVAFRHNMIETRLPVKLMSRRIGVFVDHSAGTLIFHNIYRDSMSLIHSVQTTFTEPLYPGFWVEYGSSVKLC", "length": 1006 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0AC58JHM1-1", "protein_name": "Phoenix isoform X1", "gene_name": "pho", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDLRSKGDTSVGEVMEADPRAELIFETPPPDVVSSINACFEEIDSALKIRRDPSVHSPPSDSDSESLFITQSVTKVVHTKRRLRSSKKPDSISDDSGYVRERRLSENQQTECEEESRSLRSSRRKRSKWEMYASARKATFPFLMKSLKTQHLPIRKHQILENSEVGGFFKCIKKIKTGSVKMGKVISSHLFQSPISDSSEEEDQNSEHDVISVDKALFVPGYKRGINFKWLPDFIRERRTLENYLSNGVDKEKKTEQIIEYRQRNQHPQRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDLEIAECAENSHEGHKVVIEETQRQTVEEASAHLEHEDDLNCKVVEYRKRKRHPKRTSAKALSKSSQVSKKPKKQDTHEVLASCSDHEDIESVECAENSHEDHNVVIEETQRQTVEEASAHLEHEDDLNCKNQPDVDQPNESNFIGPPQEGDISTQSDTQQTDSDIGSVDLFSPLNSPKRDDQIPNTTSITANVEENDQDSDVTQIESEGQHVSTFTQETQKCFANEEYDSDETHIDTESLSRFKPRTPNKQFTSTKHPEIPQFRVQSPKPPSRQAETVNVQLSPKHLPLSNVPLSEVPISPCESAIVGRQKTMVETETDSPMFKITGPSFLKRKRKRTKDKNAAADFKQHDTNGDVGQMVSCPGDDITGLKAVPIENIEACGVEHEMAIGEQTEELGLKSKELLEESVLSTVNSVSTKSKREKMKKYKVKECEAVENQLVETSKKAKKKKKDKERIATSYPEENNLTNIQSNEGFDSAELRVKEVNQSSQSLNTDQPTCVQTSEEITGETELKKKTTRHETDDPLYESVGLDVTLASQFDVGLRIDEQQEGLVTEEAERDERLQGKAMKVAKGKKKIQDTSFQVDHDIGLDKQRSDSGAKPANLDLDGLESLTIKKKKKKKKKHKLKEKTDPKLDFDFDHNVQFFQTDRLQTTDSVLLDSTHTNKQKKKKLKCQNDTDQSSDLKQLHVVGSKLQTIDLPKTDKHMERTGVSSSDALLEHMDDRTLGMRENNTIQTDQIEHLQTSEEVTRCSSPRLSSDKKREKTSVHPNLDASSVFQFDGFKANEDQAITQNTTKEKQISSEQLENNLVGPPSQVENIANVNSSVLLDHTHMNTLREGQLKEQTYKELALAFGLKQLCIVVNKLKTTDLPKTNKNMEGTGVGSSDELLKHTDDRTLETRENNTIQTNQIEHLQTSEKVERHSSPRVTRLSFAKKWMKTSVDSNLDASSGSQFDGLNSMAKEDWTFSQNMDLPLKRTKNKQKDKERTGVSSDALLKRMDDRPPEMRKKNTIQTNQIEYLQTSEKVTRRSSPRLTRLSLAKKMEKTSVDPNLDASSGSQFDGLKEASKEDRTAPRNSIEEKQSDAISSEGLENNPAHLVSTNKSDNTSPSSQVDNIVGLQSDANSVLLDHTHTDKQKKKKIKHKLIEQTEKELTSEVEDNVQPFQFIELRAMDLPSKRITNKKLKDRKRTGVSSSDAVLKHIDDGPSDMRENNSIQTDKIEHLQTSEEMTRCPSPRLSSDKKRKKKYVDTNLDASSGFQFNWSNGMAKEYSKNSTNISSLDNMHTSKQKKKKKQKLKEQKNVESVGDNVYSLEPDQFSGLQITEIKTKKKDKKRTKQANVEENDLKGILSNKAFKASQTYQLEHIQTSEEIKGRSPNAASKSAKKKKKKKNETKNPQYESVNLDLSLAKEDRTTTQNHTEETQGDGNAVEHLEMNPAGLIKVSKKKKKRENAGIVQLDNIIGLQSGSSTDVKSSVLSDSTDTNKHKKKKRKTLKEQENVEAEGDDVQSVEPDPFSGLQITEMTTKKKRKHKRCEEQRCLRGVSSHEAFKAPPTNLLQHIQTSEEISQCQSPNVAALENGGSPYQLENITEMQPGNSIDINSSEILYSTCTHKQKWKKLKQQENVEADANDVHSAELNLFSELKISEPTTKKKKHKKCVEKCALKDISSNEGIKAPQTSQLEHVQTSKEITQCQSPNAATLKSEKKKKQKRDETEVPQYLDASSVSQFDDVTRLKKQAKVDRTTTQNSSEETQNDDISSKQLEMNPAHLIKVSKRKKKREKAGSPYKVDKIVGLQSGNFTDVNFSQLSDSKRTDKQKKKKKIKLKEQENAEADVDDVHSVELDQFSGLQITKPTTKKKRKHKRCVEESGLRDISSNEAYKAPQTNQLEHIQTSEEITPFQAPNVAALKSAKKKKKKRDKTVEPQCLDASSVSQFDDVKTRAKEDQTLTPNSSKETQGDDSAVECLETNPAGLMKVSKKKKKRENAASPYKVDNIVGLESGNSADVSSSVPSDSTDTNKHKKKKRKKLKKQEIVEADLQTSEEIIQCQSPNVATLKSVKKKKDETKEHQRLDVSSVSQFDDVSRLKKRAKEDRTTIQNSSEETQSADISSEQLEINPAHLIKVSKRKKKRENGRSPSQVGNIVGLQSGNFTDISSSVLSDSTRTDKQKSKQKKKLKEQENVEADANDFHSAEPDQFSGLQITEMTTKKKKKHKRCVEESGLRDISSNYAFKAPQTNQLEHVQTSEEITQCQSPNVAALKSEKKKKNKRDKTDKPQYLDESSVSQFDDVKKRAKADRTTTHNSSEETQKDNISSECLELNPAHLMKISKRKRENKSLGLLSENTADLNSSSLLDGTDTDKHKKKKRKKLEGQENVEADVDDVHSAEPDQFSELQIPEMTTKKKKKHKRCVEESGLKDISSNEALKALQTNQLEHIETSEEMTIKTVKKEKKKRDATEEPHYKSVDLDVSPTESTTEAKLNPTKHKKKRKQSFSGSHDAHEAPERKRKKDRN", "length": 2809 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0MGZ5-1", "protein_name": "Heparan-sulfate 6-O-sulfotransferase 1-B", "gene_name": "hs6st1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNDTERNMVERTSKFLLIVVGSVFFMLILYQYVAPGVINFGSPHGYLLGEEDMTIFPTPDPHYVKKYYFPIKDLERKIDFEIKGEDVIVFLHIQKTGGTTFGRHLVQNVRLELPCDCRPGQKKCTCYRPNRKETWLFSRFSTGWSCGLHADWTELTNCVPGVLNKRESKSKKMRKFYYITLLRDPVSRYLSEWRHVQRGATWKTSLHMCDGRTPTPEELPPCYEGTDWSGCTLQQFMDCPYNLANNRQVRMLADLSLVGCYNLSTVPEKRRSQLLLESAKKNLRDMAFYGLTEFQRKTQYLFERTFHLKFIRPFMQYNSTRAAGVDLDNDTIQRIEELNDLDMKLYDYAKDLFQQRYQYKHMLDRREQRLLRGHASFHSPFREDGAGGEGTARLPTEDYMNHIINGW", "length": 407 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A1EC97-1", "protein_name": "Dual specificity phosphatase 14", "gene_name": "Dusp14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSRGHSTLPRTLMAPRMISEGDIGGIAQITSSLFLGRASVASNRHLLQARGITCVVNATIEIPNFNWPQFEYVKVPLADIPHAPIRLYFDTVADKIHSVSKKHGATLVHCAAGVSRSATLCIAYLMKFHNLCLLEAYNWVKARRPVIRPNLGFWRQLIDYESQLFGKSSVKMVQTPYGIIPDVYEKESRHLMPYWGI", "length": 198 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A1XQX2-1", "protein_name": "Neurexin-1b", "gene_name": "nrxn1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMILHLGAHLLFIGLIVCKANAGSSLRFTGSDEQWVAFPMWNACCESEMSFSVKTTHLNGLLVYFDDEGFCDFLELHVHVGKLRLCFSIFCAESTCVLSDVAINDNRWHSVSIMRNFRNTTLIVDDEVKWEEVKSKRRDMTVFSHLFLGGIPSELRSVSLQLTSKTVKDHTSFTGWIMDVKVNDSEPAIISSAGVHEDLCGSENTCLNGGVCSVVEDKPTCDCSQTGYQGKDCSEGLAHLMMLDRGMEEYVATFRGSEYFCYDLSLNPIQSSSDEITLSFRTLQRNGLMLHTGKIADYVNLALKNGAVSLVINLGSGAFEALVEPVNGKFNDNEWHDVKVLRNLRQHSGVGYAMVTISVDGILTTTGYTQEEYTMLGSDDFLYVGGSPSTADLPGSPVSNNFMGCLREVVYKNNDAELELSRLAYQGDPKLQIHGVVAFKCESVATLDAITFETPESFLTLPKWNAKKSGSISFDFRTTEPNGLLLFSCGRAKQHNKEAKSPVTLKVDFFAIEMLDGLLYLLLDMGSGTTKTLALNKKVNDGEWYHVDFQRDGKSGTISINSVRTPYLCPGDSELLDLDDPLYLGGVPESSSGTVFPTGAWSALLNYGYVGCVRDLFIDGRSVDVRRAAELQRAAGVKPSCGKEPSGKCVSEPCLNRGVCREGWSRYICDCTGTGFLGHSCERDATILSFDGSKFLKVQFSAAMHTEAEDVSLRFRSLRAYGVLMASTSTHTTDTLRLELEAGRVRLTVNLDCNRINCTTSKGPESLFAGQNLNDDEWHTVRVIRRGKSLKLSVDDLPTVDGEIPGDHTQLEFHNIETGIITGKRQLPTMPSNFIGHLQSLMFNGKPYIDLCKNGDIDYCQTNAPIGFKSIIADPVTFKSCSSYVTLPSLQAYYYMYLFFQFKTTSADGLILYNSGDGNDFIAVELVKGYLHYISDLGNGAHLIKGNSIKPLNDNHWHNVMISRDPNNLHTVRIDTKTTSQTTLGAKNLDLKGDLFVGGVPEQMYKDLPKLVHAKEGFQGCLASVDLNGRLPDLMTEALVCIGQIERGCEGPSSSCEEDSCANQGVCLQQWENFTCDCSMTTYAGPLCADPGSTYVFGRQGGVITYSWPPHDRPSTRVDRLALGFITLMEDATLVRVDSSAGLGDYLKLHIVKGNVVAVFNVGTYDINIEENGKLVNDGNYHIVRLTRSGGNATLQVDDLPVIERFPPGHIDSHRLGTGRLPYRRLVEESLPKNGRQLTIFNSQMTIRIGGWQKQQVSGFQGQMSGFYYNGLKVFSMAADGDPNVRMEGSVRLVGELQSSSTPHGGATVYQSSVTEISSTTSNTITITYSTPADEQQTTDELLVASAECPSDDEDIDPCEPSSGTLCCFVPPAGPTGPAISSFPGPAEVFRESNGTTGMVVGIVAGAALCILILLYAMYKYRNRDEGSYHVDESRNYICNSNGAALKEKNTADDDSGSKSKKNKNKEYYV", "length": 1470 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A2A7I1-1", "protein_name": "Zinc finger protein 978", "gene_name": "Zfp978", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFAPHQESGRRTTKRMSASLENTAQCLLTFKDVFLDFSSEEWECLNFAQRTLYMDVMLENYNNLLFVENHCICGNYEKEKVVEQDTQHIFNEHGHIQEKSFKCNESSNIIHESSESTPHKTNHRDATLQSSNLKRHKTGTTKQVCTYKDCVNCLKGSSIISLNQGTHVEKKEHNRNKNLDEVLVSKHKPIVRQNNSEMNTYTCGEFDKCFTQSDNLQSQQRIYPGKKSYKYSESDKCFTQPSHLSIHHTIHSGEKPYKCSECDKCFTDKCTLRKHQRIHTGEKPYKCNECDKCFTDKGSLRVHQRIHTGEKPYKCSECDKCFTQTSHLSIHRRIH", "length": 335 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A8N2-1", "protein_name": "PRAME like 25", "gene_name": "Pramel25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICGHCPDQDESLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPEWPFPYLSLGKQINNCNLETLKAILEGLDILLAQKVQTSRCKLRVINWRDHDLNLWAGSHEGEGLSEFTTEKQPIENSPGCEVKKELKVMTEVLRMKGRLDESTTYLLQWAQQRTDSINLFCRKLVIEGLTKASVIEIFKTVHADCIQELILRRICIEELAFLNPYLKLMKRLFTLTLDHIIGTFSFGDSEKLDEEIIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDYLPYCLNICELKHLHLSDICLRDLLLEPLGFLLERVGDTLKILELESCCIVDFQFSALLPALSQCSHLREVTFYDNNFSLPFLKQLLHHTALLSQLISECYPAPLECYDDSGVILTHRLESFCPELLDILKAKRQLQSVSFETTQCSKCGGCYIYDQETQCCHFVELLLA", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2A9Q9-1", "protein_name": "MAGE family member B5B", "gene_name": "Mageb5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPRGQKNKHHRNRLKNKKHNQEKVHPQKDESQEKGHHKRDDFQDHKEARDNAAVEEKSSCSSPSVPGETLEKPPASKTSSDAGWLSCVSSPATVCGDELEFDDGTYFHCGGNSLYSEYRTCQENPCKHCLDMYVNLVEQYVLYKFKMKKLIDRNKLIDLIEPKYRYNFSDIFKRAFENIEIVFAASVIEIDSTNHVYDLVSKLKLPNKGRVCPGRGLPKTGLLMTILAMIFMNGTSASEEDIWKFLNYMQVYPGRKHFIYREPRKLITQDFVKLKYLEYKQISLSDPPCYRFQWGPKAYTETTKMKVLEFMAKGSGVEPSTFSVQYTEALREENQKTKIRKWYPILAQKHCPGHSHQHVQKVMKPQ", "length": 366 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ADW8-1", "protein_name": "Predicted gene 15128", "gene_name": "Gm15128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANREDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHDSRRSRNRFRRAPVQSERSHVYSGRTNNYTDRPQHDLSNRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIAHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESFDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW6-1", "protein_name": "PRAME like 22", "gene_name": "Pramel22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MHRLLREEALAISSLKDLPNMLFPVLFEEAFIFGYTKILKAMIPEWPFPYLSIAVLIDNCNLESLKAVLEGLDILLAQKVHSSRCKLKEISWRDTNHGLDGIRPGSHEVEGLSEFMEQKHPNCVEKKELKVTTELSVMNGRLNESDTYLLEWTQQRKDSIHLFCRKLVIQSLTKATVIEIFKIVNADCIPELELCSLCLEDLAFLNPYLRQMDNLLELTLDHITDSLSIGDSEMLEERMITLVSQLPTFPCLQKLCINDVYFIYGNLKEFLGCLKKPLVSFCISNCELSQSDLDYLPYCLNIFELKCLYIINIHLQYLCLEPLGFLLESVRHTLGCLALKSCNMGEPHFKSLLPALSQCFHLTDVNFQENELSLLSLKQLLQHTSKLTQLSYEMYPAPHECYDDRGVILSHRIEQFCPEVLDMLRAKRQPKDINFVTTQCSKCGIYYVYDLETQRCRFLK", "length": 460 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AGW7-1", "protein_name": "PRAME like 23", "gene_name": "Pramel23", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNVNSPPTLMKLASQRLLREEALAISALKDLPNMLFPVMFEEAFINGHTKILKAMIPLWPFPYFSLGMMIKNLTLDTLKAVLQEIDILISKVVHSSRCKLKEIKWKNTDYGLQGIWPGSHEFDGLSEFMEQKQPDCGVKKELKVITHLKLMEGSLDECATYLLQWAQQRKDSIHLCCRKLKIQGSINATVIEIFKIVHADCIQELELCCLCLEDLDFLNPYLKQINNLIRLKLDEIKGTVSMGESRNIDEEKVITLISQLPTLQHLEKLCINDVSFIEGNLKECLRCLKKTLEILCITNCYLLQSDLDYLPYCLNILELKCLDFSNIPLSHLFLEHLRFLFERVRHTLECPILKSCEMGESQFNSLLPAISQCCQLTEVNFYDNELSLIFLKKFLHHTAKLSQLTYELYPAPLECYDNRDIILSHRLENFCPELLNILRAKKTAQGGHLCYNPML", "length": 455 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AHC7-1", "protein_name": "SSX member B14", "gene_name": "Ssxb14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVISCEKIPMEVLHKPKNICKAFQDISTYFSGEEWGKLTEWQKSAYMYMKRNYTRMTGVTVNQPVFMSGKEQAKQSLVKGIEVHDSEDECFEESFGVTPRKRMKLTSVTISIHNVEGSLASGENDSNLAETDGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 168 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AK42-1", "protein_name": "Pre-mRNA-splicing factor CWC22 homolog", "gene_name": "Cwc22rt5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKSSVAHMKQSSGHNRRETHSSYCRSSSPEDRYTEQERFPRDRDYSDYSRSDYERSRRGYSYDDSMESRSRDREKRRERERDADHRKRPWKSPSPDRSPARGIRQSSPQEEPTWKKKKDELDPLLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSVLQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLAQVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEEEEEEEEEEEGEDEEGGQKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYENFFGLLAGRFCMLEKEYMESFESIFKEQYDTIHRLETNKLRNVAKVFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPEAEQKKTALTSSSSESSSASDSSDSDSDSSESSSESSSEASDSSSSSSTQSSTSAKGTRKKRQGKARGEEVDKLARGHQALERRQGGREDQRHQEGRTERARSERHRAQNSRDADWRDSLAKHIDDRSHENSHSRVGNGREQGSHREPEDRHGEPKKKQREKRFFL", "length": 830 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE0-1", "protein_name": "Reproductive homeobox 2F", "gene_name": "Rhox2f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYLLDVGPEEDEENANGVKTLMVLLAGDGRNEGESGRGLPGSGASAAEGYRAGEISAGGPAAQVADLMDDSNQEDLGATACDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHLWRHSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ANE1-1", "protein_name": "Reproductive homeobox 3F", "gene_name": "Rhox3f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSMSNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDNTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEALRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREKYRWYKRL", "length": 215 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ASJ1-1", "protein_name": "PRAME like 14", "gene_name": "Pramel14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDLEAPPTLLQLAAQCTVRKEVLTISVLQNLPMKLFPPLFKEADILRKAKMIKLLVEYWPYPSLLVGLLIDKTNLETFQAILEGVGTWLKRKYRPRMGKLQVVDLRNGHHDFWDMLAGREGGDQLVETMPEKQEVEGHSRRQRLRVFSDLSFKSSRHEDKQQTHLLQWAKDREGFLHLCCEKLEIGALGVSKVKKVLKLLQPEFIKELELNTVGNLSKLTKLVPCISKMRNLQKLMLVRIFGRHTYTPLEERNVTKILSLFPKLSYLQHLTIDDVYFLRDHMNELFRYLEAPLLSLTITLCQISQSDLESFSQHWNYGQLKHLCLKGVSLSTLNVTPLKFFLESVADTLQTLELEDCRMKDSHLRILLPALTKCTRLTSINFYDNNISRDVLQDLLHRTANMSQLTMELYPAPVEVYNEWSYVQVERFSQLCAELMNTLITVRRPKSVCFGTYSCYDCDTHCIYGNQTTFCECLE", "length": 475 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2ATW2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4x15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADIHNVTEFFFLGLSSNQEVQRVCFVIFLFLYMAIVLGNLLMVVIVAVSRNLGSPMYFFLSSLSFVEICYSSTTAPKLIVDLLAEKKSISVWGCMAQLFFMHFFGGIEMFLLMMMAYDRYVAICKPLHYTSIMNRQVCTVLVGMAWMGGFVHSLAQVLLIFRLPFCGPNIIDHYFCDVLPVLKLVCSDTFLIGLLIVVNGGTLTVISFVVLLSSYAVILFHLRTQSAEGRRKALSTCGSHVTVVVIFFAPCVFIYLRPTATLPIDKMVTVFYTVITPLLNPIIYSLRNAEVKKVIKILCTRATKVDKK", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWL9-1", "protein_name": "Reproductive homeobox 2C", "gene_name": "Rhox2c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSVNYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGASAAEGYRAGELSAGGLAAPVADLMDNSNQEDLGATGCDQEKEKQPEEPVPDSMGDLENVKRVSGPWSTVNPVRVLVPKFRHGWQQSFNVLQLQELESIFQCNHYISTKEANRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AWM0-1", "protein_name": "Reproductive homeobox 3C", "gene_name": "Rhox3c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BED8-1", "protein_name": "Predicted gene, 58953", "gene_name": "Samt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQFVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEE3-1", "protein_name": "Spermatogenesis associated multipass transmembrane protein 1d", "gene_name": "Samt1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQLIVDTRSVIYRFINEKDCIYKLSGLLSSLAAFMLEVLIASILSWRLWEFDSNVVQLVSFGLFEAYYPQQFNISGTLTKMLVYTPIDSTWNISTEFMYAQNLVVWAILMKPVVLVFCVMAIKISCTKNPLVEMQIYCYKISALILSVSSMFTFVSVIWNHMVDFYGHTTLDFPSDFPVKKEALTSKHLTVVLPVGLLIATMSLFGVIMFLSEISDLKLKRPVKANDASKMGLLDA", "length": 237 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI6-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 10", "gene_name": "Msantd5f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLAWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BEI8-1", "protein_name": "Myb/SANT DNA binding domain containing 5 family member 8", "gene_name": "Msantd5f8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MQREDNRVQSVRSDKEANRRRRLRQEGQSSSGPCDSPWTEDEIWILLQEWAMVEYELGDPGNKMHAKAKSLSRRLSNRGLRKSKNSCLDVMVKMKDLHTRLCNERPRAYRLYSTYEWILYEILGHPRSQGGYVPGLWFDGHSKPPASYAPSLCIGGAISPGPSFSPWTDPEIKIFLQEWQVVEREIGHPGQKIKQKSSLVCQRLYHRGLFKDIQSCLDLMWTLKDLHSTLSRERSRTVPLFSPYRDYLERIFDPKCQRGHVPGALYNWSGYHRPSSSPQTPMVMPSPVYQPWDYGMSASSGQLHGNPSLIMSSQDSLVPRWDAWNATYPLPVQHVLLASLSGDNNFQLVWSPRDESSSPQ", "length": 360 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFR3-1", "protein_name": "Histone H2A", "gene_name": "H2al1j", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTHSQRGEFPLSLVDRFLPEGNHSGRLSSSAPVILDSVLEYLSSNILELAGEVAYTTGRKRIAPEDVGLVVQNNEQLCQLFKPGATSVFDPPEPDDN", "length": 109 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BFZ7-1", "protein_name": "BTB domain containing 35, family member 9", "gene_name": "Btbd35f11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BH64-1", "protein_name": "Secretoglobin, family 1B, member 30", "gene_name": "Scgb1b30", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLTGALLLLGAALLLTSEGDCGLCPVLQKKVHKFFDGTTEEYVEYLKQYNNDPLVLENAANIKKCSDRMLAEEDKTQATNFINKVTGSRSC", "length": 92 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BHG6-1", "protein_name": "BTB domain containing 35, family member 7", "gene_name": "Btbd35f7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSFGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI40-1", "protein_name": "X-linked lymphocyte-regulated 4A", "gene_name": "Xlr4a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSDDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKTVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI45-1", "protein_name": "X-linked lymphocyte-regulated 5A", "gene_name": "Xlr5a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKKKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQHTIVEKEISKVQNRVIMETQDQDISMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI50-1", "protein_name": "X-linked lymphocyte-regulated 5B", "gene_name": "Xlr5b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSNKEQKAMKKSGKHQRVHKTLPSDDFKNSDEVNPADKPAVGTSGMGSHSSGSDMQEAREPVQKKMQDFKGDDGTGLLMEKRKQFEEDVNASFRSLNENLQSILKAQQNSRQELKSLYCERFGSVYHNWLVEMDRTRDQEEYFSFITQQQMKILQTAIEDHETKLKNAKDMCDTFLKKANDLSKRQKTFIGGQQTIVEKEISKVQNRVIMETQDQDIAMVETYLQSLIHESSEETI", "length": 236 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BI74-1", "protein_name": "SSX member B6", "gene_name": "Ssxb6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSSCEKIPMEVLYEPKNICKAFQDISTYFSDEEWVKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMRGKEQAKQSLVEGIEIHDSDDECFEGSFGVTPIKRMKLTSVTISIHNVEGSHDSGENDSNLAETGGIQVNVWSHRLRERKYRVIYSEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2BIM8-1", "protein_name": "Major urinary protein 18", "gene_name": "Mup18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 181 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CEK7-1", "protein_name": "Major urinary protein 14", "gene_name": "Mup14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG71-1", "protein_name": "BTB domain containing 35, family member 19", "gene_name": "Btbd35f20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLQPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSVYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKMRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTLKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CG92-1", "protein_name": "BTB domain containing 35, family member 10", "gene_name": "Btbd35f10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIHALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2CGC2-1", "protein_name": "BTB domain containing 35, family member 3", "gene_name": "Btbd35f4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQRMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 496 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A3KG49-1", "protein_name": "PWWP domain containing 4C", "gene_name": "Pwwp4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDSSEYVLCGWKSQLCPARVLSRPRTPAHSKRRGVPFLEVQILPVGEKRRVRSSKVRPLAKSEIISINSLAGKESRGRGSPGQTRASRRALKVALDGLGEGSSFFQGGRAGSRRTSTLAPKVPKEQASSSSSSLGQRLRLRLRQLLPLSLCQRLHLHLRLRLHLHMHLCLQGRNQKGQGLSQRSPGKRVRPDPGPVMMGSQNVPAVPVGEAQAHTAAGLPRSEVEGDVLRGTRVWPSYSKKTPLGKAGGNPGKRKPGTGKRKLRSLSAPASRKGTRSKTEQQAASGPPRHISISPKALKQRVRCAGLEIRAAGAQRKTALAENKDHPGLGTPKPDSKRASAACMPPVLRLRRSLRIASRKKKTHVLCALCGLPEWEPQVHSKVTNTRFKRRGARVQKDAKATNVVSAQEPSTIEQGTLVWFKFQDLPFWPAVVKSVSKIDKMARVLLIEGNMQFERRGIRVPLRKLKHLDCGEKVSLVRRASRLYAQGINWCFSVIDHYREGLSRGSLLGSFMDYYTTQASYPLRRAVQEGDLHIDFPKVSYAELEDWEEETALGGKGPYKKLLPDRMRAAWDRANQKLVDFIVKRKGADQHLLDIVKGRKPSRWLDDLWKSKREVFCIETYLEDDDQLHLVARHLQEVAKEADEALLSLARGDKVRFTMEVLFPEAIIYSIAALDELSYKEAEEKYLRGPPVHYREKELFDKTILKAARKRSAARIRAARDPPVPTP", "length": 728 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A5WVZ0-1", "protein_name": "2.7.1.138", "gene_name": "cerk", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEKQSTLLCSELSVQRRLYEVTLNCAILAWKDVQNAKKHTGRAIYGAVKAGSHCVPVCEIIAVQEKEDDSPCKDTGKWQKVPQSPTDSCQHAFTVYYVERTRQHCWRCSNVTFQYSEHSLCLLWIQTIKEQLALLSAQSTEELAGVHQPLRRKTTRQADLRPQSGPHLFPGFHFHRRDWPHSFSAHPSELRFYIIADGKEPVMKCTGDCFSPRVQLHHLMQLIDGLHQASRKMQFNCQMNIMMFLPPLYHQPGNNGFSLFVSIVTEHANHARDHLKAEADLKKYDGVVCVGGDGMFSEIMHGLVSRTQQDAGVDENSTEETLIPCGLRIGIIPAGSTDCICYATVGSNDPVTSALHMVVGDSQPMDVCSVHSDDRFLRYSVSLLGYGFYGDVLKDSERKRWMGPARYNISGVKTFLSHRYYEGTVSFLPAEENLGTPRDKVQCRSGCSICRRSSSDKLLSKEDEASVSDVDCRDTWTVIRGKFLAINAANMSCACPRSPKGLSPSAHLADGTTDLILVRKCSRVDFLRHLLRHTNKKDQFDHSFVEVYRVKQFRFTPRFQECGSEMDLRESRAGGKHFFCQICRENRACGCMSSQSNWNCDGEILPHTAIQVRVHCQLIKLFARGIEEQPVFEDLYAHCQLNNPPNHEP", "length": 649 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A5WWD5-1", "protein_name": "alpha-1,2-Mannosidase", "gene_name": "man1b1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLPSTRKDFVSLTLSESGSYSNSKQWRRQSCWRKWKQLSRLQRSLILLTLMLLLVCGIATSPTLIGHWRGMNGDDVKNSFVVDLKNEYRSILPEPPSERKDFDRRGAFGLEKLLQGKVNVSGVLGDQNHGLDLKNADKGSEGQKPIISWRGAVIEEEQASDTDTKDTENQGDPASLALAESRLEAVREAFRHAWKGYKDFAWGHDELKPISKSYGEWFGLGLTLIDALDTMWILGLQEEFAEAREWVAKELSFDKNVDVNLFESTIRILGGLLSTYHLTGDNLFLDKAKEIGFRLMPAFSTPSKIPYSDVNIGKGTAHPPRWTSDSTVAEVTSIQLEFRELSRLTGDPKYKLAVMEVMKQVHKLDGKQDGLVPMFINTNNGLFTHQGIYTLGARADSYYEYLLKQWIQGGRIEQELLEDYLQAVEGVKKNLLKKSTPLGLTFVGELSHGHFSPKMDHLVCFLPGTLALGVHYGLPADHMELAKQLIETCYQMYAQMETGLSPEIAHFNMHDGSTQDVDVKIADRHNLLRPETVESLFYLYRLTRDKKYQQWGWEILQNFNKYTRVPTGGYTSINNVRDPSYTSPRDKMESFFLGETLKYFYLLFSEDPTLISLDKYVFNTEAHPLPVWPQAE", "length": 632 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A6NCW0-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 3", "gene_name": "USP17L3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALASGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NCW7-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 4", "gene_name": "USP17L4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGYYFSYVKAQEGQWYKMDDAEVTVCSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATEESTLDHWKFPQEQNKMKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSMNSTDQESMNTGTLASLQGRTRRSKGKNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NDS4-1", "protein_name": "TBC1 domain family member 3B", "gene_name": "TBC1D3B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNIEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDISGTLRKHMFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQSKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKQGDLPPPAKPEQGSSASRPVPASRGRKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A6NJZ7-1", "protein_name": "RIMS-binding protein 3C", "gene_name": "RIMBP3C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDSPSPLGASPKKPGCSSPAAAVLENQRRELEKLRAELEAERAGWRAERRRFAARERQLREEAERERRQLADRLRSKWEAQRSRELRQLQEEMQREREAEIRQLLRWKEAEQRQLQQLLHRERDGVVRQARELQRQLAEELVNRGHCSRPGASEVSAAQCRCRLQEVLAQLRWQTDGEQAARIRYLQAALEVERQLFLKYILAHFRGHPALSGSPDPQAVHSLEEPLPQTSSGSCHAPKPACQLGSLDSLSAEVGVRSRSLGLVSSACSSSPDGLLSTHASSLDCFAPACSRSLDSTRSLPKASKSEERPSSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHELIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLADRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARDLSEQASAPLAKDKQIEELRQECHLLQARVASGPCSDLHTGRGGPCTQWLNVRDLDRLQRESQREVLRLQRQLMLQQGNGGAWPEAGGQSATCEEVRRQMLALERELDQRRRECQELGTQAAPARRRGEEAETQLQAALLKNAWLAEENGRLQAKTDWVRKVEAENSEVRGHLGRACQERDASGLIAEQLLQQAARGQDRQQQLQRDPQKALCDLHPSWKEIQALQCRPGHPPEQPWETSQMPESQVKGSRRPKFHARPEDYAVSQPNRDIQEKREASLEESPVALGESASVPQVSETVPASQPLSKKTSSQSNSSSEGSMWATVPSSPTLDRDTASEVDDLEPDSVSLALEMGGSAAPAAPKLKIFMAQYNYNPFEGPNDHPEGELPLTAGDYIYIFGDMDEDGFYEGELDDGRRGLVPSNFVEQIPDSYIPGCLPAKSPDLGPSQLPAGQDEALEEDSLLSGKAQGMVDRGLCQMVRVGSKTEVATEILDTKTEACQLGLLQSMGKQGLSRPLLGTKGVLRMAPMQLHLQNVTATSANITWVYSSHRHPHVVYLDDREHALTPAGVSCYTFQGLCPGTHYRVRVEVRLPWDLLQVYWGTMSSTVTFDTLLAGPPYPPLDVLVERHASPGVLVVSWLPVTIDSAGSSNGVQVTGYAVYADGLKVCEVADATAGSTVLEFSQLQVPLTWQKVSVRTMSLCGESLDSVPAQIPEDFFMCHRWPETPPFSYTCGDPSTYRVTFPVCPQKLSLAPPSAKASPHNPGSCGEPQAKFLEAFFEEPPRRQSPVSNLGSEGECPSSGAGSQAQELAEAWEGCRKDLLFQKSPQNHRPPSVSDQPGEKENCYQHMGTSKSPAPGFIHLRTECGPRKEPCQEKAALERVLRQKQDAQGFTPPQLGASQQYASDFHNVLKEEQEALCLDLRGTERREERREPEPHSRQGQALGVKRGCQLHEPSSALCPAPSAKVIKMPRGGPQQLGTGANTPARVFVALSDYNPLVMSANLKAAEEELVFQKRQLLRVWGSQDTHDFYLSECNRQVGNIPGRLVAEMEVGTEQTDRRWRSPAQGHLPSVAHLEDFQGLIIPQGSSLVLQGNSKRLPLWTPKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLHGH", "length": 1639 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "A7TZG3-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 9", "gene_name": "Skint9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSASCLPGFFMSFLLLQNTVLTQAMRSDIKINIQVPDTEGLLLECTSGSLIPPAEMTWRDSNGNIIPHSTAFNSQDRDGLLYLKSSILLKNRAKGPITCSIYNVTTNQEKKRSIVLPDALFKSENMSLMSNKFSCPSIYLITIIFLNFLRGILVFCCLRRKPVCFRNLMSTVMEALYSKMGVCCLLIWECLLLVLYIAFLPIYVSFRSRAFLLDDTYPLYTNWLWNICIILTVIMVLFPGLILCLLWTLNCYGQVSSLPPTSMELSTKDSEQNSSKSDDSQENYDVNCKILETCESKIFSQHQESCEDDTASTLFIS", "length": 319 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A7XV14-1", "protein_name": "Selection and upkeep of intraepithelial T-cells protein 11", "gene_name": "Skint11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPSASCLPGFFMVCILLKITVLTQVMSLDIQINTQIPDTEEGVLVECTAESLFPPAEMTWRDSKGNIIPPSSTFDSQDRAGLLCLKSTILLKNRTEGPITCSIYNKTTNQEKRRSIILSDVLFRPQYMSLMSNNLLYLGIYLIFILFLNFLKGILFCLTKRLVHFRKRMIKIKKVWSNKTRACCPLIWEFLEIVLFIAFLPLYLMFRIRVFTLDEAHILYNNWLWKVCKTLIAMMILFTVLILFLLWTLNRYGKMPCLSSMNIDVSTHDAEQNSSKSAKFQENYDVAGQMILETYEETIFCQHQESCEEYNYDPLLLSSLDALGTCEDEKFSQHQESFEEDEDLQSFSDFKIELYSKLGNLTH", "length": 364 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B0BMZ6-1", "protein_name": "Cilia- and flagella-associated protein 119", "gene_name": "Cfap119", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MITPRSSQSLEMKVQTELEHSPKLQEEPDRSPSLVDSSVIRIGTDEQNESPAEATSSPVEVAEDPGANLFPPPLPQPRICMWKYLDIHSMHRLEKAATVEEMREVLAELLELGGPEQSLRDAIILDLFSHALIFCRQQGFSLEQTSAACALLQDLHKACVATPLGNVEECYRYFTSVLFCHGVRRPPFSIDLFKEEQLLALADYVVNTYFRHFKLYKYVFTPQVRLDLSLSYMGLQSLHLWPEEKEDEEATVEQAATPQEEEPEAVTEAEQQPSEVCILQTYIKCQLNKELRQLQQLVEERLKESEERLSNRLAALERPYQTPPSKGKSKAK", "length": 332 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0G0Z9-1", "protein_name": "Probable polyketide synthase 6", "gene_name": "pks6", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLKNIDLIEKGVAIVGIGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSEASLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGASNIDYQHTNKHQDSVLKNAIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSDISIVGGVNLILDVEMTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECVGVVVLKNLQDAIKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSAPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTAIQIYSKSNYLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQSTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNLNIELPLYQWSDELYFAQNQVLEQHRKGGPPIDHLGLSNSYYSPFKNSYKTLIDINYKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDHKSNEWIQSSNSNFQLLDHGNDIPSNYNIKEIIKNKCNLSKLTKNELYKNIKSKTGLNYTGVFQGVTECYIGDNCTLSVVSLESQTNSFLNIPILDTCLHGMLILINDQCQIVFDKAIGFKYYSSNIPADFKENKDSFYVYSNLRPRVGGDSYHGTIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFQSSLNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSFEEKDDTYFEFNKVIIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKIYKCSYLRKKNQVISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYHPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLTTNGQLVFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCGMPQQSWYQLLNSCNFKDIVMSKECIFFGSVIQAQKPPISLLNSQPKYDNIIIYGGSINSSFVENIKLDSNSKSLFQIETIQEFNKLISKSTITNDSIVYFIKTLETLSLDNFKQITLEYIEINQKLLQINSLCKHVLIVSDSRKTNYLASSAIGAARYFDEFPLLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKKIQIKPSKISHIEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGRDGFGLSTFEILKWKGFKSNLFVTVNSDKTKQYLLKKYGDLITGIYSNTDKSYVAEIKNKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLTKYGRIIDLNSNHLNQSEFLKNINFKYNHGYHNFELSLFQKNKILKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINDILNENQQIRNIDSIFHFAFQQIACKVQEINMKHLNISHGAKSMGAINLHNQSIKRNWKLINFVMASSALSFIDSTDQCTYACANTLLDSFSKYRVSLGLPSTCINLGLIESTGFVSKNESISVFLDGNGIIPTPINRVLGLLDLQIQNASKFTNSMISNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQNKYLPSNRIDYWKNEMKFEESIKPIPNEIRSRNNNSGKIILLTGTTGFLGGFLLFNMLRLDSCKLIYCLIRNKSKSSYPLDEIINNLKYHQLYEKLNKSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKNYNIPSILIRPPSIFLNPETGIGHSSDLTLLMIQSCYELGYCPNQILNGFILINTITWLSNNITNIIMNDNCWTNSKMNIYNVHGKQIQSSLIIKPLEKHFNCKQINNNDWIDMVNNSNKKSCIKLKSFHSLENIFKSENKGYKSNESQSISLSTKSLLESMGSYNTDLKITDKMIISHIKHIFK", "length": 2924 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G100-1", "protein_name": "Probable polyketide synthase 7", "gene_name": "pks7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNFKNINLIEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYLHTNKHQDSVLKNVIAQSTCAISNRISYCFDFNGPSLSIDTACSSSLNAISQGYHSILNGTSDISIVGGVNLILDVETTKAYSYLSMLSKTHGKCKAFDESGDGFTRGECAGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNEKLSVNEIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRKNEKPVSMMINNFGVTGSNCCLLISEFKKQDYEPYENNYKSNNKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLCQRSVIAASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLINSKLSKYYGYSVLEKLRSIGDDDTTSIHDPNISQPAVCMISVSLFELYCHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYHRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSVLKLNIQSNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIINPVRFTQTISNIYKHIESNQLNNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNKKIDLPLYQWSDETYFAQTQTLEQHREEGPPIDHLGISNSFISPFNNSYKTLIDINNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNQWTQSSNSNFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTHIKSKTGLNYTGVFKGVTECYIGDNCSLSVVSLESQTNSFLNIPILDTCLHGMLVLINDQCQIVFDKTIGFKYYSSNIPAYFKENKDCFYVYSHLKSKSADSYHGSIIVMLSDGSVLYEIQEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSQIPTPSYFKSIIYENDSFHSIVNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSRIISKLLFPLENDNDNEDLPQSLFQNGLMDKFYKCNNFKKKNQIISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVTLLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYLPLTIGESLIETQSIKPSYYDFVIMSNVLHVVKDIKQVVEQMYQLLTPNGQLVFVEPPYKSILIDSIVGSFDQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDIVMSKECIFGSVIQAQKPPISLLNSQPKHDNIIIYGGGNNSRFFENIKLYSNSKSLIQIETIQEFNQFINKSTITNDSIIYFIKTLETLSLDNFAQITLEYIEINKKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSKISHIEASSIPIDYLASFISLFNVGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFKSNLFVTVNSDETKQYLLDRYGDFISGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKNARIIDLTSNHLNQSEFLKNINFKYNHSYHNFQLSLFQKNKIQKCLNEISNAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRYLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSIDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYACANTLLDSFSKYRVSLGLPSACINFGSIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQQISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTINISIKMILNSLMKNNQCGREI", "length": 2513 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G101-1", "protein_name": "Probable polyketide synthase 8/35", "gene_name": "pks8", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNLEIINLIDKGVAIVGVGFRIPSGNNENSICSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFNECKSFDPLFFGINPSDAHQIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSNIDYQHINKHQDSVLKNVIAQSAYAVSNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVGMIKAYSYLSMLSKTHGKCKAFDESGDGFTRGECATIVVLKNLQDAVKDGNRIYCVINGSSSNVDGGGHMDKVNLYSPSKQSQFNNINSAFKSTNGKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRINEKPVSMMINNFGVTGSNCCLLISEFKKQDYESYENNNNNKSNHKNILIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNYLYQRSVVIASNSNELFEKILNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNDEIFKKSIDLIDSKLSKYYGYSVWGKLTTIKDDDLTSIHDPIFAQPALCMLSVSLFEIYCHWGVNPSFILGHSLGEISAAYCSGMIDLDTFCYTVYYRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNDIVFIEIAPHPTISFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYSINFKCQLENKKSNQSINLPLYQWDDELYFAQTQTLEQYTKEGPPIDHLGLSNSYYSPFKNSYRTFIDINNKPFQYLKGHMVKGKYYFPGCGYIDIIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPSNYNIEEIIKNKCNLSKLTKNELYTQIKSKTGLNYTGVFQGATECYLGNDCSLSVLSLKSQTNSFLNIPILDTCLHGMLVLINDQSQIVFDKAIGFKYYSSNIPSDLKEYKDSIYVYSNLKPKNADSYHGSIIVMLSDGSVLYEIQEVIFKSLIPIKHSLKIEYPNDELYKVHLQSKDSQIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKNQRLFRFVFETIKENGILNSLEENDDAYFEFNELVIKSSKIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCSYLRKKYQMISHVIIHSIKEIINNNIIIRILEFGGGTASLSVEVIGEIVALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGLNVIYRSLTIDESLLENQAIKPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFIEPPYKSVLIDSIIGSFEQWWSFTDTDIRKDRCGMSQQSWYQLLKTCNFKDILMSKECIFVGSVIHAQKPPISLLNSQPKHDNIIIYGGGGNLSFVENIKLDSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNYKQITLEYIEINQRLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLHTLDFDYDSTQNYINSKNNKMVQFINILVDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNNNNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNFKNIQLKPSNISHNEASSIPIDYLTSFMSLFNVGSLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVDLDETKQYLLDRYGDFITGIYSNTDKSYVTEIKNELIKLGSKKKGVDLILNTLPSDFMDSNFELLTKSGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFQLSLIQKNKIQKCLYEISHAIENGELKTIPIKEFTNLNIKDAIKYITNGNIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAVNLHNQSIKRNWKLINFVMASSALSLIGSTDQCTYACANLLLDSFSKYRESLGLPSACINLGSIESTGFVSKNESISEFTDGIGYVPTPINLVLGLLDLQIQNAGKFTNSMLSNLISSKFKNIQQTSLFLKFDYLMNLNDNSEQTKKENIGNKNIDELFIEKVSELFSTDQSRINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIKQLQNNTINISIKMILNSLMKNNQI", "length": 2514 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G110-1", "protein_name": "Acyl-coenzyme A oxidase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKNRIEIIKKHLEVNNSQTTNNKDEVLEKELFNSIDTNINVGELKLLIDSVEESKYKDETREFIRNHPKFKENFIGLDMATYRQLVLEQCAAIANRGLIHFTDIKNNLHRYIGALEMFALYNNNILTKLSVQYTLFGGPIIFLGTSRHEKYIEDANTLKTMGCFAMTEIGHGSNVRGIETTAHYDKQTKEFIIHSPTPTSEKFWIGCAYLHATYAVVFANLIIDGTNYGIHAFIVPLRCPKSGAIMKGITIKDCGHKLGLNGIDNGQIRFDQVRIPRENLLNKYSDVSEDGVYKSQFNTPIKNFAATMSPFIVGRMAITKGCSGAAKTSLSIAIEFSHIRKQFGPSSNKELPLITLSSQQRRLMAPLARTILFDLYIQRLTNELCQEKLPASIHAHCSGIKAVYSWFCVAALQTCREACGGQGYRSANRIAEFKNDCDIICTYEGDNTVLMQQLAKYLLGVKQKQTNTTTNRIYLDGEDAKSLFFNFSNINQLFETREEMRLAELKQIIDNSKESAYFAFNNAIPWAVKLGFAHMTKIVFQNSINTLKLKNVKPLTHLIMLDALVSIEEDLGWFVSNHLISPNVAQSIPFLIQDLCFEVTKVSKQIIASFDIPENCKPSSKDLISDLF", "length": 629 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G138-1", "protein_name": "Probable polyketide synthase 21", "gene_name": "pks21", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLENKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSIAMGFQSIQNGTSNLSIVGGVSLLLDPYISKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSKTSTPSKPLLIGSLKSNIGHSEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNNNEKPVSMVINNFGVTGSNCCLILSQFIEQSINQNGNGHSYPAESQQQQQQRFLIPFSANSVKSLKNYEDLIINDIKISTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTNNDKSSNITIKRNQPLVVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLNLKENNIFCAFLGSLSSFHTSSQHSTKNEILPLDIPSKQSRIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDVNFKCQFNHNDDDVSSIRNSKVNISLPNYQFDEQHYWKVDINFEQYRLNGPNVFNSLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNQDIIINNLEFLAPFVLKENVKHTLQTNVYQLGNTDYRVTFNIKDNKTNQWVQTCTGNFQLISLKDNNNDHSSKYDINQLLSECNFTTLSKQEVYKHSRSITGITHLGAFQGIEELYFGNDCIISKIQVNTENFDIDGKPVYQTYDKSFFNTALLDSCSQTIVGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLESDSYKSSVLVLLEDGTKLLEMDCISLHSTLPLLNSLLINNPTTELFTNNLQCKDSLVNILSIDNNQTFSSISSSNTVTEIIKQTIKPIINEKIVFRILQSFSDLELSKQIIETLNQIFDDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDGDDETIIKSIFNILSSNGLLLIIGDDIGDKYNIDSLINLGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKESKYTNEFMKLISNNHISCKQTIISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGTARYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNQIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISNENQNCEFKVGDNVFGIACDTTASHVIADVLYVSHKPENISHVEAASLPVIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIELMHINKKVVSRLLKSISNALNENKLKPIPITTFQIEDVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKSVDVGDPIEMRKSINQILLENPNIDNIDSIFHYAFAQITKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCSYVSANLVLDSLSRYRKSIGLPSTCTNWGAIKSAGFVSRNELVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKNSNLIVSKFNYDSIKKLSSETSTFQRLDFILNSIKEKDNDSNGGENSVSESIQTKILNKISELLSIEQSKINTDIRLSDYGADSLTSVQLKNFIDKDIKSNVITLQQLQNNTIDMNIQTILEQIKKLDSNETKGKSKNIIKKDSAPTLDYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKIKVIVGNLASPLLGLSKLDFDYISNQINLIINSGADINLASNYEESKVVNIGGFIELIKLSTTGDYQKPIVGFSSVSVFFNASNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLLREVAKRGIPSMLIRPPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPKIDKNILTSPIGWISLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSAMNPSFSFLEKQYGCEMVEYEQWKNIINQSKILSCVKLKTFHSLDDLYNIYNLGNGFGVSKKTKELLQSMNSYEGGMVNEKMIQNHINYIFKN", "length": 2779 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G149-1", "protein_name": "Transmembrane protein 184F", "gene_name": "tmem184F", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLSHINIIYIIWILLFFFTCLISFFLVNRHLVNYSSPNVQKNVVRIVMFLPLNSGLSILSSIFPGIAIFNSLVRNCYMAFTAHCFFSMMTNSIGEKNMLDLFESQGKMKFLCCKVMKLNRKLFNTLRFGSIQFFIVKIFCSIATITCISISEEVHSILNVQSFAPYEFLISLVASIFCTISLSIFLAISKEKLSQYWPMTKYRIMIFIFFIEQFEYLFFALIFLRGPFFLGFKNSFDQTIFILHFTVVVTMFLFSIVYLFIYSYKNYRNKASNEPLVGRNFKDSFGLLNYLDVLNPKDLFIDFASIFKTNNNKFKELVEENGDKKPKKNIEDQNQENSNDQPLSIQMA", "length": 348 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0G188-1", "protein_name": "GATA zinc finger domain-containing protein 16", "gene_name": "gtaP", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSYQIQNQPYQQIQNTHPSFQQVQPMQVPHLQQQQQHQTMIAQQQHTPPQQHTPPQMNMIQQHTQPMLSQPQISLQMQPPSPILASQQQQQHMQSSPILASSNLTNSNNASQTTLPIITSKLLLKKEPIDQEVVNSTHKTTTTNNKPPKQSKRKEKERLEEEKQTVAQQQQYQPPFIPLASNESNSDNPFKGSHAYGVSTTPYGNSQFNNNNNNNNNNNNNNNNSNNNSNNNNGNNNINNNNNNSNNNNNNNSNNNNNNSNNNNGNNNNNNNNNNNNNNNNHNTNNNNSNSNNNNNNGYQQDKKDDYSMMIWSEVGRKINILIRTTSKATKGTPISTQEIAEAIGASNGVTADLVELIKSINDPTYVRKLPPSSISNTPTMGSQSGGMVYNSSPMLSPSTMSPILQHGNYQMGGDMYFGGNNQFSGDKQSALNNVKNSKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVTNTPEWRRGPNGAKTLCNACGLAWAKSVKSEKQKELLANSTGVNITEPKKAQKRKKESSDNNNNNNNSSDSNKVLKSDDGSNNTNLTNDDDNGYPSSPNSSNSTSPSSHNINNNNNNNNNNNNNNNNNNNNNNNNNNNNIGNNNNNNINNNNTTNSITTPTTTPFPTTIPAMQIVSQLPVMVPQTQQQPHMSGNIISFQALHQNSGYQHYK", "length": 695 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "B0R191-1", "protein_name": "C-X-C motif chemokine 11-6", "gene_name": "cxcl11.6", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MKTLAAFLLLSCLIAGEVNGQDRSSRARCFCVDKGLNMVLLKNLDKVEIFPPSPSCNKHEIVVTLKNGAGQKCLNPDSKFTKNVVLKAIGKRMQQSVPHSTTTGTVKSSMTSSTSAPTAFK", "length": 121 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "B1AV09-1", "protein_name": "Leucine zipper protein 4", "gene_name": "Luzp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANHEDEIRQLRYLEAANSEEEYNEENDIQSESSRGQAFFPGHPRGRGHRRDSRGRNGHFFRQRFSANHPLLHLTRQVNLESLTRRNGNQSEERQLQQERIQLFFRSLHGLSQSHDHHIGRSHGHYSRRSRNRFRRAPVHSERSHVYSGRTNNYTDRPHHDLSDRPHNQLSVRPHPDLSGRPLHDYSGRPHQNHAVRLQHGHSDRYHLTHTERVLPNNSGIDHPGHTERDNQVQRGRAHDNQSGLAHHNHDGRSHHDHSGRAYHGHARRAHNNQSWRSDNNQSWRDLNQSWRGQNNQSQRGHDNQSQRGHDNQSRRGHDNQSQRGHDNQSQRGHNDQSWRAHNIRSRRDRYHTSLRSSSIQSWMLHERERYHGPRGRNGPRDASPPGSEPEIDRSSAIRERTDYLWVQEHRRNETVELNVGLEDGYSSAEESDESLDRLTCRSMLDTLY", "length": 449 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AY40-1", "protein_name": "SSX member B8", "gene_name": "Ssxb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "METVSFCEKVPMEVLYEPKNICKAFQDISTYFSDEEWGKLTQWQKSAYVYMKRNYIRMTDLGVTVNQPVFMSGKEQDKQSLVEGIEVHDSEDECFEGSFGVTPIKQMKLTPVTISIHNVEGSLASGENNSNLAETSGIQVNVWSHRLRERKYRVIYEEISDPEEEEDDDY", "length": 170 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AYI3-1", "protein_name": "Predicted gene 13272", "gene_name": "Gm13287", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPVHLFLVGGVMLSCSPASSLDSGKSGSLHLERSETARFLAELRSVPGHQCLRDRTDFPCPWKEGTNITPMTLGETTSCYSQTLRQVLHLFDTEASRAAWHERALDQLLSSLWRELQVLKRPREQGQSCPLPFALAIRTYFRGFFRYLKAKAHSACSWEIVRVQLQVDLPAFPLSARRGPR", "length": 182 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1AZM5-1", "protein_name": "Predicted gene 12886", "gene_name": "Gm12886", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLPCSLWLLSVCLLSWCCDAKLPVALDPESESVPKPPVLKTATEIAAIVVFMKTSNETPKSGTYGQSLQDGKNKIKDVEKEVLDACSQLCQSLAQDPNLHHGYILRAYFKEHQFLCCF", "length": 119 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B1B0R2-1", "protein_name": "Spindlin family, member 2D", "gene_name": "Spin2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESSKLTKKRAGRKRQRSRSPALPKRNIVGCRISHKWKEGDEHITQWNGTVLDQVPVNPSLYLVKYDGIDSVHALELYKDKRVLSLKVISKRVVSSGVTDSSFADAIVGKEVNHLFEGEHGSKEEWRGMVLSQAPILDNSFYITYERDPILYTYQLLDDFKEGDLQIMEGFSDPPSLDIDLELVDGLIGKHVEYTNDDGSKRDGLIIYQIETKPRVYLVKYEDDVHIHVTHLEKEL", "length": 236 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "B4F7F0-1", "protein_name": "Claudin", "gene_name": "Cldn6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASTGLQILGIVLTLLGWVNALVSCALPMWKVTAFIGNSIVVAQMVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVITLLIVLLGLLLYLAGAKCTTCVEDKNSKSRLVLISGVIFVISGVLTLIPICWTAHAIIQDFYNPLVADAQKRELGASLYLGWAASGLLLIGGGLLCCACSSGGTQGPSHYVARYSSPVPHSRGPSEYPSKNYV", "length": 219 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B7ZW38-1", "protein_name": "Heterogeneous nuclear ribonucleoprotein C-like 3", "gene_name": "HNRNPCL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFVQYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMYGSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSKSGKRGSSKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKSEEEQTSSSSKKDKTHVKMESEGGADDSVEEGDLLCDDDNEDQGDNQLELIKDDEKGAEEGEDDRDRANGQDDS", "length": 293 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "B8JKF6-1", "protein_name": "BTB domain containing 35, family member 13", "gene_name": "Btbd35f13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRFLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGAINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYVLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD1-1", "protein_name": "Spermatogenesis-associated protein 31F1B", "gene_name": "Spata31f1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD2-1", "protein_name": "Spermatogenesis-associated protein 31F1C", "gene_name": "Spata31f1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HKD3-1", "protein_name": "Spermatogenesis-associated protein 31F1D", "gene_name": "Spata31f1d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSTMCFLWDTECPLYVYFCFFIIVLIVWQVRQNYQGLKCENRRSCCRRHQKVRQRAKDAASRARRLSREEDEKPCELLSIMKSQSWVPKQGNVRQLLCLDPSCQICEATTLEIRQLLQSKKSQISPALLGLPQRAACLEMPISSESFEWNQDFYSRYSTNSPVVPGNQTLTQLTEELTESTNADGVLLCWTDPLQIGQEFHLADMPMASETLVSPGLEEPVVLMNEEDTVHSNLNYIQQLQDHEALNSQIPFQTLTPQLTVTHPMAVSIVTDAPQPFLSPEVLRLLEIHVKKLMHFQRWGLPRRVEESLKQFMPNPPVYLPPEHNQPVSFILNTSSQDCVHRFEGISPETWYSYMDGQPIQTFWVSEWSSGDQGQRLSCKPIPSPVEKPLLTPDYELLHDLCLSPEGQVDGSQSNLQKKFTQLFCGLPSMHSESLGSTFLCTQGVSKNTLKPPYKEPHFLKVSPPIPLPEAAPPPSSTSPNESLDEPQRAQIGGVPFLTLSECKTLEWHLLQRQLQLQWGLPAVIARPPRVQSHTQYKHKPWNKAKPRETLKFFGPGKPFSALTRELFFIPQHARRLLEFHLQKRLIHLRWGLPQRIQRSINMLLSSTDLQSLPCGGSRLPNVSISQPGKPEAYGSGDTFLPTAGKGTTPMPHLFAKAQEMLKSHDTKCEQIREGKVPACVQSAWKGRIPGDLAAGTLFPNIPQGQPLELQAENNPDLHQEAVSWKPMDLDQEAQAFSGVFIEHCRRPQALSEETIKKLETTLRHKYLAFLSGLQALYCMAPTKATSPTVDQSVITTMPWSVKSPQKPLSQKSPLEALCLSGLEPCTQDDKETSANIAEEFQHGAQGHGRTEKVPPERQPLLNRPYSLDTEIMERVSFYLKRKALDIKLGISLKESVFQEPTATDLESESVQEPLGSPRESTLLQGPPTLCHVPVAPDPDKVCLKQPATAVQVVFQEQNQPSSRAVPHRSARQGSQVHRNMMEAQVHYVQMGTGGEMLNLGEPFSTESQSPGKSKSGYVPTVAGKRKIPGKPKVVGDLGEGDAGLGFSLVSLKTRQDGEQEKRLLHRQLQGSSLQAQTFHLEGACPHSPQESPELQFADPPPEVFMETDSEQDMEDSQSKESIVPEPARTAKAPQPMLSRASQGLPFPRSPTQRKPSQGQPGPGHVPPGHATPASPYTRPSRLPEAGLKNKMKLFFHSIKLKMKSKAHTEPSTVSTPGKVAKTSKENIDRGLPQAKSPTKKTKPEDFRGPKAQFSVVGPCLTPSYILDSKFWPRPRRVGSVSVLGHSYHCPRHCPRLAYANQQRNPP", "length": 1308 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "C0HLM6-1", "protein_name": "Small integral membrane protein 20", "gene_name": "Smim20", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAAARNLRTALIFGGFISMVGAAFYPIYFRPLLRLEEYQKEQAVNRAGIVQEDVQPPGLKVWSDPFGRK", "length": 69 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "C7G009-1", "protein_name": "Thioredoxin fold domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLILNGNWLVKFGAGWSGHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEYESICIKYNIIGYPSLVFFDEGEIKHYRGPRLFENFKEAIDKHLNKEFVAFSQNQPSKIIVITNENLDLLLTGNWLVKFGAAWSLHCKKLQPVLENLAQHYNSDNENSKVKVAQVHCEEDNSICKKYNITGYPSLVFFNEGQIKHYTGPRQFENFKEAIDKHFKYGVKWSGHCKKFQPVLENLAQHYNSDIENSKIKVAQVHCEGDDSICKKYNITGYPSLVFFDEGETKPYRGLREFDKIKEATDKHFK", "length": 303 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G010-1", "protein_name": "Calcineurin-like phosphoesterase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLKIKFSIISLFILKLVISKPILKFNNNNQFKIIQFTDLHYGSEPVDDIDTIFSQVNILDYEKPDLVILSGDMVTGYEEQFEDDDRNYWKYWNVFTRPFVERNIPWAITFGNHDGEGALSTNEILKIDQTFNLSLSQSNPVEMHGIANYVLKISSSNSLKSEPASLVYIFDSSTKGCSKLDWGCVHQDQVDWFKNTSKSFNKTDSIAFVHIPPVEIIDLWNNYPVYGNYSETSCCFDNDYGDFVSSLVESGDVHGLYFGHDHENDFHGDYKGVDLGYGRKSGAGSYSSKKPLGARVFQLTESPFTLSTWIREEDGNIVSQVIHPPSEFDRKPLQCKMKDKYSKKELIAIKVIGGFLIFLGIVVVGLIGFFGFKHYKKFKKQTLEMQNLV", "length": 390 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C7G064-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKDEKQFQQFPNKGRTVQANTDLPKGSTVFRCAPFASSIEDSDKLATEKYCGFCLQRIPKSDSKECLCKNCKLYSVCKSCRSINESAVEPFQIIIKSTFHLGSDTRDMRLLLRIIANIANGKQGMQTPIDDYQDFMGLTSTLDKVDKEHMTKFKRGVTSISSLISSVRGVGYLKNTITIHEILECFSSVLTNAHQFSYATSKEIGRGVCPTGYFNHSCMPNTTWSLDDQGMLLFSTSSNVKKGDELSLGYLANEYPLKNRRRELLDGYYFFCQCPLCEFQSNLSGYLCEKCKEPLLNDSIVYHEPSLTNPLDTGIGLIKHLRKMIDFRQQSVEFKKMFSSEQLSNILQKGVPKHIQSVFNCDASDNEELQQIVEISERSIKSLPLINGEPIDFYPLSDRNYYEYFKQLKNSKISSPEELQRIKDKILSLINPTIYNSFKDKIDKRLLI", "length": 449 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "C9JPN9-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 12", "gene_name": "USP17L12", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLKLSSTTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3YTW8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r258", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSIHQFVILVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAESRATQTILIVVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNL", "length": 314 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTX5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r259", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY1-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r107", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLDFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YTY2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r138", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YXI8-1", "protein_name": "Predicted gene 10377", "gene_name": "Gm10376", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQAGSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQNNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKILCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAVMSNPCA", "length": 184 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYI9-1", "protein_name": "Predicted gene 7347", "gene_name": "Gm7347", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3YYY1-1", "protein_name": "Secretoglobin, family 2B, member 7", "gene_name": "Scgb2b7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACFPFFEAYASVLSGSRVWLYQELQAFDATAEEKVALEKIQDCYSEESIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z236-1", "protein_name": "Predicted gene 3676", "gene_name": "Gm3676", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGSQTVSFRKASPQTPNIDENEKRIKRLEKLKRDLQNIKNERDILQGILAKYKDLNDRTNFETFMLEMQHNQMMTDLKRMSQDISEALYKCQHLTKENQLYCCRNCHLLIESNLIQHKVRMLWKENRQLLRKQIALEECNIKTKTLCKEGSQKIKDEYSRQAAGKQIIVVPGSKEEAAMSNPCA", "length": 184 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "D3Z8D1-1", "protein_name": "SIGLEC family like 1", "gene_name": "Siglecl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLWGLRSLLLLHLGFLSPVLVDTKKTAVEDGLCSTVPCVIEFSKAPLRKPMIVSYRLNENISFHAGTSQPRGPVADLSTEEVEYCILLTHNMLGRKNMTYSLYVGLGAQKDLTQKQELHIPGSSMAGEPVSLTCTIHSTCQESKALFLSWKGPIMSSSTTVPINPSSALAIDPKPEDQDTTLRCHLKLSLDNLSSSKVVKLQLVSPARLLNYSCLLKRTLTCSCSFHGIPTPSVQWWVGRTPVSVNSIDAILHMTSTTLESWTNSTIHLMWEPEIIKSLRCEGKNQYGVHASGIFLIPDKSSVSSVFLRGLIQGIVYGAIASALFFFFLVVLGMKILNWWEENQTCKNEEAPTLKKPVWGGAKPAEVGS", "length": 369 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z8T0-1", "protein_name": "High mobility group nucleosomal binding domain 2, pseudo 3", "gene_name": "AABR07053402.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKRKAERDAQGDEAKAKDEPQRRSARLSAKPAPSKPKKAPAKKREKIPKRKERKADAGKDANNPAENRDAKTGQAQKAEGAGVAK", "length": 86 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3Z9U8-1", "protein_name": "S100 calcium binding protein A7 like 2", "gene_name": "S100a7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSSEQEVMKLFDLFQNYHVRRTDKLDVQETKRVLREFFPNFMKALNASGIKILNDLEKEITLDEIWDMIGRMAMAYNKKNSNALKD", "length": 91 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZAM9-1", "protein_name": "Olfactory receptor", "gene_name": "Or4f60b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKVNYSVTSEFVFLGFTNSWDIQLLLFLVSSMFYVACIMGNCLIIFTVASDTHLHSPMYFLLANLSFIDVGISSATSPKMISDLLKKHKVISFRGCVIQIFFNQAIGGAEMVLLIAMAFDRYVAICKPLHYLTMMSPQMCLFFLITAWVVGLMHSVIQLIFIVNLPLCGPNILDSFFCDLPQFIKLACMNTYRLELLVSISSGFMSLVSFFLLSISYIVIILTVLKHSSSGAYKALSTLSAHVTVVVLFFGPAIFFYIWPSSTHLDKFLVLFDAVVTPFLNPVIYTLRNKEMKRAMRRVFRHLMGYRQIS", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZC26-1", "protein_name": "Ferritin", "gene_name": "Fthl17fl", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEDAINNHIRLLLQASYSYLSMAFYFDRDDVALGNFKRFFLSKSHNCKASAEMFVFMQNKRGGHVFLPSIAKPDRESWHGGLRAMECAFRMEMTINQSLLNMHELAKGKDDAHLCDFLGQHCLDQQVHVLKKMGGYLTNLRQMGAPEQGLAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCM9-1", "protein_name": "Dynein axonemal assembly factor 3", "gene_name": "Dnaaf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTTPAGSGNGFGTVSWWGLSPALDLQAESPPVDPDSQSKTEHKIPELDALLLGSVDGRHMLRTLARAMLWPLRRFNFYVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLELWGNALLRPSVAAFLRAQASHLSNLVPEPDRLEELLPWLSLRPLKFRERDALEAVFRFWSGGEKGPEVFPMSRLWDSRLRHYLGSRYDARRGVADWDLRMKLHDRGAQVIHFHEFRRWRDTGVAFELRDLSAYHVPNRTMASGRLLSHRGERVAARGYWGDIATGPFVAFGIEADDKSLLRTSNGQPVKTASEITQHNVTELFRDVAAWRGPRAIKGNVEETKSPEPDAPAQEPFTIHFLPLDSSQTLHHKTCYRGRFQLLYVSCGMIHLLSPELGACVAPGGNLVVELARYLVDLRPKELKAFSDRVVEIAQAAGFAPHTGTKPSETFARFYKLGDSTRGGGDSAVESGPVPSKVLAPTPESINPPQADQAPSLEVMSPPKVDQTPPLEAMSPPEADQAPPLEAMSPPRADQIPPLEAMSPLQAEVVLPLEAISPPQADLAPPPEVISPVQEALAMSSAIAPLKHVT", "length": 583 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZCW3-1", "protein_name": "SPATA31 subfamily E, member 1", "gene_name": "Spata31e1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "METFLLLMNSISDFWMSSSSMSTVMDMIFAILCGVGFFFLLIPFLKEYPGSPPPGSKKNISEVVKRRQSKDRKKSVTVDGCRDSQKNSLDIQHDLQTMESPIQHLLLDSSPHPFWNSKEKLNQLSLPQLFSYLKVLEALIQQKFNQLLLGLSSVLSESVVATAWVSREPSSGERKTVRFSDSLGFDQALPLAKGPPQRCLDQPLPHQLVTPSLVGMTEIQEQENLPNSISYQTPSIFQSRARGTAYPTTATGIQVPLPTTNEPCHPGLNWKDIPSCKVQNCQGASSQPTESLARCTLPTKNTRSASIPPEHYLMVHHHEQPQHEEKAINLGEQQRTHARFLPSKEPAQLQGDSPPNSNGYGKNWPELNQPAQPSTLNSKTYKWNQMMGPVPTGMLLKKVIAKYGIPNTIKKDLKLRVKDLLCTSSSTPGESLETKNLTLRTDEHSMNTTENLSFLDPKTTMMKSNIMQLPMKHRQLPCDSKAEPYTKAAFILENLHHQDPGGIRVETASSARLRSPLFEQSPPEVQKTQSSPPPIDSHGHSRSHPDQWQRYQSVQPHALCSQAQPQQSRSIQGTGRSILQPNISVWMSKHERWMRSEDVASGHTSWSSRTVGYRDRVSPSVAKQTNILKIKEESPHVWRANLGSGEITNEQALNNSNEDFEPIEAKRSQGHLQMPTQQNTGYLHLKTEEYSNNDLKVNKQPQAWSVSHHADGSNTVHHAMVKLPSQHSLPSLQNGWQDPKTSQGLGDLLMNRDQSVETQFRVHKDKTEATNDSVFHPSEKRPSNLKYGGISQGERLGRVKSSISSFTQLKDSAKTESKSSPNIGGKREAPSKSSLKFIWNGAQYENLSTKLKGQRDSLKKDIPPPVTEQTQEVVHRINVIYSTAVELQSLMDSLVHKLVKTVGEPSELTRKHMTKVQEYKMESLPFQLGSSSQPSKGLHDPNKSRSVRRMSDDHTSPKEPNNHTFTYRGNRDKMQAGVDVQRVCYQHLDKVKIGFGQHSTPMRNGNPCFHKKAGDKQESSLADQSTGDADQTKPKNEIVGSPHRIPERHNQSSRYREIRDNQEPSVDHKAIDPHQNTKKGMGYSQLMSPKENHPVKISGTAAQGASDPEEIRTKSGKECSPHRSPKMHDHSLRHREVRDKPQPGINTQRAYDQHLNSPKKRMTSENLLTPKGTNHPCWHRVTGDKQQSSLSDQRACDPEQMRRSGMSSYPQRSPKVYHLSCSSEKIGEKLLPLVNDQRTHDKHPNSVKTRGCDNLPTPKGSNHPQGYRVIEDKQQLGLAYRRTCDPGQIKKSGMGKGPCKDTEECNLLYRYKIIGNKQQPGIVHRACDRHQSSKEGMGQGQPMNPKVCHSAKHRRTGGQDQSGVAAQGASNPR", "length": 1373 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDD6-1", "protein_name": "Synaptonemal complex central element protein 3", "gene_name": "Syce3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADSDPGERSYDNMLKMLSDLNKDLERLLEEMEKISVQATWMAYDMVVMRTNPTLAESMRRLEDAFLNCKEEMEKNWQELLTETKRKQ", "length": 88 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDJ1-1", "protein_name": "Olfactory receptor", "gene_name": "Or13c3f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDDMDKNNQTFVSEFLLLGLSGYPKTEILYFVIVLVMYLVILTGNGVLIIASIFDSHLHTPMYFFLGNLSFLDICYTTSSVPSTLVSLISKKRNISFSGCTVQMFVGFAMGSTECLLLGMMAFDRYVAICNPLRYSVIMSKEVYVSMASASWFSGGINSVVQTSLAMRLPFCGNNVINHFTCEVLAVLKLACADISLNIVTMVISNMAFLVLPLLLIFFSYVFILYTILRMNSASGRRKAFSTCSAHLTVVVIFYGTIFSMYAKPKSQDLTGKDKFQTSDKIISLFYGVVTPMLNPIIYSLRNKDVKAAVKYILKQKYIP", "length": 320 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZDT4-1", "protein_name": "Transmembrane protein 92-like", "gene_name": "LOC100364194", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQEAWVLDALTVIFGLLFSLQGVSSNKTIYKCEDIHCPKGFRCCDNECCLERKIWNTDNEPFRILFIILLVMLPLLCICGLVRRFCPKCRELQHEVRTADHQSPPDPPSIAPLESIWVTSLDPPPPYSQVVQKSTPTEPPPPYSLRPEDSTCPMRETSHETL", "length": 162 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFJ9-1", "protein_name": "Family with sequence similarity 24 member B", "gene_name": "Fam24b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSSFDLRTIIMIVIGSGILAAMFLLTGVVLCLYSKIARALNPSGTGKELDDQLCSDPCKTTQDQIIRVNSLNADTCRPFHGSTIGLENCQPLQCFSACGTYEGANSLTPCLCNTKEGL", "length": 119 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZFW5-1", "protein_name": "Transmembrane protein 107", "gene_name": "Tmem107", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRISGLVPSRFLTLLAHLVIVITLFWSRESNIQACLPLKFTPEEYEKQDNQLVAALCLTLGLFAVELAGFLSGVSMFNSTQSLLSIAAHCSASVALSFFIFERWECTTYWYIFAFCSAFPAVTETALFIAVFGLKKKPF", "length": 140 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZG05-1", "protein_name": "40S ribosomal protein S12", "gene_name": "LOC120100003", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEEGIAAGGVMDINTALQEVPKTALIHDGLARGICEAAKALDKRQGHLCVLASNYDEPMYVKLVAALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFEYKK", "length": 132 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGM7-1", "protein_name": "Peptidase inhibitor 16", "gene_name": "Pi16", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRNCRVSWMPQHSSAAVSGICPPQEGPWSSYSLWPEPPLLREKEAVAKDSRGVDSTLVQTQGTQPSWRHCVSWAGPPDTAPAAPPQPGWCLCGKDFKSSRQTPDRERQRGLATMHSSCSPWVMLPQLPLLLLLLLLLLTATGPATALTEDEKQTMVELHNHYRAQVSPPASDMLQMRWDDELAAFAKAYAQKCVWGHNKERGRRGENLFAITDEGMDVPLAVGNWHEEHEYYNLSTATCDPGQMCGHYTQVVWSKTERIGCGSHFCETLQGVEEANIHLLVCNYEPPGNVKGRKPYQEGTPCSQCPLGYSCVNSLCEPERKPEKAQDSPPRVTEVPGSRETGIPSLATSESLHFSSVTKVSDSLATEPSPAVETKAPPSLATEGPSSMATEAQSFLTEVPSVSATHIQPSLDEGPVNFLTSTHIPVPKSTDKEASSKSRAASVSPEKSLYPKMSPTETGESPPQIQEEAEPKAELPEREDELPEAEVELPEAEAELPEAKAELPVSSEALVPVLPAQERGGPKASLEHSSYPVPTYLPNFPSASGNATGGRTLALQSSRTGAEDPEKASWDSKNSAPVWGPFPGLLLPLLLLAGIF", "length": 596 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZGX2-1", "protein_name": "C-type lectin domain family 2, member M", "gene_name": "Clec2m", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQTESSLRLSQSSHHRLTFDLKKVVTLWILVIGVIAVLLWGFFSFPKKFTVTRQTKNEVCSDGVKICLHGWNKLNRNCFTHFSHANSWFTAKETCKFHDATLAVFNDQTELDIVMKQMEDIQTFWIGLYKKDFRGPWVWTNGSKYNNWYEVQDYGHCAFLHKSGIDSTNCNDLKEYICTQEGHCP", "length": 185 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZIZ8-1", "protein_name": "Ferritin", "gene_name": "RGD1560203", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAEASSQVRQNYDRCCEEAVNTHIRLLLQASYSYLSMAFYFDRDDVALENFKRFFLSKSHDCKASVEMFVFMQNKRGGHVFLPSIAKPDRKSWQGGFRAMECAFRMEMTINQSLLNLHELAKGKGDAHLCNFLGQHCLDQQVHVLKKIGGYLTNLRQMGAPEQALAEYLFDKLSLS", "length": 176 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKK4-1", "protein_name": "Zinc finger protein 869", "gene_name": "Zfp869", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDTPIVGLSSPDQGLVSFEDLVVHFTQDEWDLLEASQKSLYGDVMLETFRNLTAVGYEWEDEAIEDHCEEPEVNLRDIVSHSEYTHEYEHKEYEEKPPDANFLTSVEGCVETKTSSGPSVCEVCLKTFGLYHLTYNGHHNYDYKELRGSQTEENDCEGNSCDKTSGSLQKEDKIHTGKKLYVCQECGKAFRYPSALQLHERIHTGEKPYECKDCGKAFRGLSALHLHERIHTGEKPYECKQCGRAFTYLSALQLHERIHTEERPCECKQCGKTFRYSRALKLHERIHTGEKPYECKQCGKFFRSHRTLKLHKRIHTGEKPYECKECGKAFRWLTSLKLHEKIHTGEKPYECQECGKAFRCQASYHRHKITHGGETLYECKECGKSFIYPSLLQVHERTHTGEKPFECKLCGKAFRCQSSLRLHERTHTGEKPYECKHCGKAFSSYNYLRFHERSHTGEKPYECKECGKTFTHRSYLRSHERRHTGEKPYQCIQCGRSFSRHSSFKRHQSVHGESPYEQYLIPLSPFSSKE", "length": 530 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZKM3-1", "protein_name": "Protein GPR15LG", "gene_name": "Gpr15lg", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLLTLSGLFFMLFLCLCVLSSEGRKRPAKFPKLRPCCHLSPRSKPITWKGNHTRPCRPCRKLESNSWVVPGALPQI", "length": 77 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZL22-1", "protein_name": "Olfactory receptor", "gene_name": "Or1x2b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSKWGENETGVIEFLLLGITNDPQQQRILFWAFLCMYLVTVAGNTLIFLAISSDPHLHTPMYFFLANLSFDDVCFTTNIIPRLLAGHVSGTETISYAYCLTQMYFLISFGNVDTFLLAAMALDRFVAICYPLQYHTIITPRLCVGLASVVWISSGLIALVHTLLMSRLTFCSSIPEISHFYCDAYLLMKLACSDTRINQLVFLGAVVFFVAPCILIVFSYVRIAMAVFQIPSAKGRHKAFSTCSSHLTVVILFYGTVLGIYIRPPDSFSTQDTVATIMFTVVTPMLNPFIYSLRNKDMKETVTRLLHRGSKSS", "length": 313 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZLG9-1", "protein_name": "N-terminal Ras-GEF domain-containing protein", "gene_name": "AABR07047293.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFSCCVWTTEGSGLKKDKNEGQGGTWKFMLLSCLQCLWPFAQKEIDLTRDNQAQDHEDQGEHEYAPQVVTEPCRESRISADMVENLVNRLVSSLQGGDPFFIPAFLYGYRQFTTTQHVLDRLLKRFAYFYLGCEEDEQIKSSLCCFLDTWIDQYPEEFSQTILKKLKTYLTVNMPSSDLNLRVHMLLKELRQESNESEGKDDDSVSLPVTLLYKTASAADLSSSVEVGSHTSGDLDIEVWFPSQKVQPEPAYPHETETPQSTIKVISWD", "length": 269 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZMT2-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3", "gene_name": "Ndufa3-ps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGRSSDFFKNAQAKEPVLVVSFSVWGLAVILPMISPYIKYAGVISKATPYNCPVPVRDNGNVPGVPSQPQERLSPSLERLKNL", "length": 84 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNA3-1", "protein_name": "60S ribosomal protein L7a", "gene_name": "AABR07049918.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQETKNVVNPLFEKRSKNFGIGQDIQPKRDLTRFVKWPHYIRLQWQRAILYKQVKVPPAINQFLQALVRQTVTQLLKLAHKYRPETKQEKKQRLLAHAEKKAAGKGDVPTERPPVLRAGVNTVTTLVENKKAQLVVTAHDVDPIELVVFLPALCRKMGVPYCIIRGKARLGRLVHRKTCTTVAFTQVNSKDKGALAKLVEAIRTNYDDRYDEIRCHWGGNVLGPKSVARIAKLEKVKAKEFATKLG", "length": 266 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNR1-1", "protein_name": "Elongin-B", "gene_name": "Elobl9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVFLMIRRKKTTIFIEAQELTTVLELKRIVQGILKRPPEEQLLFKDDQLLDESKTLRDCGFTSRVAKAQDPATVGLVFREDASEGLQIHPYSTPLLPSVMKTGTDSLE", "length": 109 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZNU6-1", "protein_name": "Olfactory receptor", "gene_name": "Or5p66b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSWLENGNHTTVAEFLLLGLTDDPVLRVILFTIILCIYLVTVSGNLSTILLIRVSSQLHHPMYFFLSHLASVDIGYSSSVTPNMLVNFLVERNIISYLGCGIQLSLVAFFGAAECFLLAAMAYDRFMAICNPLLYSTKMSTQVCILLVVASYIGGFLNASFAMVSFCSFLFCGPNIINHFFCDFAPLIELSCSDVSVYVIATSFSAGSVTMITALVIAISYSYILITILKMHSTEGRQKAFSTCTSHLTAVTLFYGTVTFIYVMPKSSFSIDQNKIVSVFYLLVIPMLNPLIYSLRNNEIKSALKKQIWRKTVS", "length": 314 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZPU6-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC134485591", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKGKRRSTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAEGIIVNKQVKGKILTKRINVRIEHIKHSKSRDSFLKRVKENDQKEKEAKEKGTWVPLKRQPAPPREAHFVRTNGKEPERLEPSPYGFMA", "length": 160 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQ96-1", "protein_name": "Large ribosomal subunit protein eL21", "gene_name": "LOC102550668", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTNTKVKRRGTRYVFSRPFRKHGVVPLVTYMRLYKKGDIVDIKGMGAAQKGMTHKCYHGKTVRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSRDSFLKQVKENDQKKEEAKEKGTWVQLSLQPAPPREAHFVRTNGKEPELLEPVP", "length": 155 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQD9-1", "protein_name": "Developmental pluripotency-associated protein 3-like", "gene_name": "LOC120096627", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDKSSEKVDPVVNPETQMNDGSQREDEEDSPDDSEILQPETLVKVMKKLTLNPSAKPPKYHRHQRVRLRIKSQPVGNRSERIMREVQSAFPKTRVRTLLSVLKDPIARMRRFVRIEQRQRQLEGNERRDEPFRCLCTFCHYQRWDPSENAKIGQNQKN", "length": 158 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZQT0-1", "protein_name": "Glyceraldehyde-3-phosphate dehydrogenase", "gene_name": "AABR07071101.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MILCIKPSSTTKYCLNQCYLISCINKPNLLDGVNGIPLDIVAINDPFIDLNYVVYMFQYDSTHGKFNGTVKAENGKLVINGKPTTIFQERDLANIKWGDADAKYVMESTGIFTTMEKAGAHLKGGTKMVIISAPLADAPILKYDNSLKIVSNASYTTNCLAPLTKVIHDNFGIVEGLMTTVHTITATQKIVDGPSGKLWRGGHGAAQNINPETTGVAKAVGKVIPELNGKLTGIAFHVLTPNVSVVDLTCHLKKPAKYDDIKKVVKQASKGPLKGILGYTEDQVVSCDFNSNSHSSTFDARTGIALNDNFVKLISWCDNEYGYSNRVVDLMAYMASKE", "length": 338 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZTK7-1", "protein_name": "Uncharacterized protein", "gene_name": "AABR07012426.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSGDLEAKISGYTHISVQRFCYKWTISNFSFCMDGIRENITSPVFSLEGNEEVQWCLRIFPNGVDEESKDYLSVSLGLHSCPKSPVLAKVQFWIINAQGEKHQIKEIPNILSFSPKHQWGLRKFILREFLLSRRHGLLPEDQLILCCKVSVVGPSFSTPGHNMTPANKDPRQMLADDVGELWENSLFTDCSLVVAGQEFRAHKAILAARSPVFRAMFEHEMLESLTNRIEIHDIHLQVFKEMMAFIYTGKAPHLHSHSMATELLAAADMYDLQDLKVMCEDSLCRNLSVKTAVPTLMADLHSTELLKTRVMDFIILHASEVSETLEWKSMVESHPHLVEEAFGSLASMHYFFLEPSLKR", "length": 359 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZV50-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MLVARSWVCHKTYVTPRRPFEKSRLDQELKLIGEYGLRNKHEVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIVVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLRLAKSIHHAHVLIRQRHIRVRKQVVNIPSFIVCLDSHKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEKKEK", "length": 195 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3ZWL0-1", "protein_name": "Ribosomal protein L32 like 1", "gene_name": "Rpl32l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAALQPLVKLKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILKPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNLNARLRSAENE", "length": 135 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A176-1", "protein_name": "Golgi associated RAB2 interactor 5A", "gene_name": "Garin5a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPRLRTSARSPAPAVRMAISPSGPLGFTSPVTQPRREASPGVPTTQGRGVAMKGGRDLKPASGRADRPLAQAYAPCRPGRLQRHLLSGEFDQLRDFPIFESNFVQVTRFGEVANKVTMGVAASSPALELPDLLLLAGPDKENGHLQLLGLFPLQFVQLFVHDVSRQQLKVKFRTGRAFYLQLRAPPETRDCEFGRWVRLLYRLRFHSPTCAVPFTHEDTVPEESEDEDEVEEGQLQPPEVRAGPRAQGCWARKDGKGPVSCHRGQTRPAGLRTLGALIQPRSFQITKGPEIKPAQLRAREMDF", "length": 303 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4A9N2-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a77d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQNNSVSEFILLGLTEDPAGQKTLFVVFLLIYIGTMVGNLLIVWTVIASPSLDSPMYFFLAYLSLIDALYSSTILPKLLIDLLCDKKTISLTACLVQLFVEHLFGGVEIFLLVFMAYDRYVAICKPLYYLTIMNQRVCVCLVVVSWIGAFAHALVQVFSVYKLPFCGPNIIDHFACDMYPLLGLACTDTYFLGLTVVGNNGAISVVVFMLLLLSYGIILNSLKTHSQEGRRKALSTCSSHIMVIVLFFVPCIFMYVRPVSNFPLDKFITVFYTVFTPMLNPLIYTLRNLEIKKSMEKLCRKIFTSDRIRISSCYS", "length": 316 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAM5-1", "protein_name": "Preferentially expressed antigen in melanoma-like", "gene_name": "Pramel", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVKTPNKLLELAIHSLLNEESAAIQALEEIPRELFVPLFIAAFEGGHKNVLSAMVKVWPYYCLHIGSLSIQEPQHELLKAMIENLPVYPAPSSSSRGPKLRILDLRQDTDCRITCPEVSTKTPSCFYSCAYSDRSITKIERQLCCVNAECKTLLPRPVELLVDLSLDGSLMEKEFLVLLMYKIEESLGSLHVCCRDLQIDKLCKCKCTLKFLDLKCIDQLSVDRGSLSDITSILCRMIHLESLSLSNVTFRSLSGKVFKIFLSHLQRMEHLKELSLSSFCLKNHLDRVLRILPPGLDFLYLPFCDLSYRDFKFMSQSPQVTHLKLLNLSNNPMYWGDFEPFHTVLINLSGTLQHLEINHCLISDSAMSALIPALIRCTRLRVLGFASNPISMPMLVNIMHNLTPMKELKYVIYPIPVHCYERWHFQGSLDRQKLAIVQLQLKAMLELAHREDMNWITYCE", "length": 461 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AAN9-1", "protein_name": "Similar to human chromosome 6 open reading frame 52", "gene_name": "C17h6orf52", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVETQSPGKECAVLPLWVLTVTSCPLPSAIREQLRVHHSLRCHRDNHYELLHSFYWLSCYSRGSTLSGNGLGPLCVTENPELLAGPWAIPEETTDPAENQEEDFLRDPNLHLNIEESDKEFMAVREELYDSLMNRRWHCLDTVLSNVPDELPQCEVF", "length": 157 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ABB6-1", "protein_name": "Olfactory receptor", "gene_name": "Or13a27c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VNCIWHSKMVSPNQTVVTEFVLQGFSEHPSLRLFLTGCFMSLYTIALMGNIVIIALVTSSTGLHSPMYFFLCNLATMDIICTSSVLPKALVGLLSEENTISFKGCMTQLFFLVWSGSSELLLLTVMAYDRYVAICAPLHYSSRMSPQLCGALAMGVWSICAANASMHTGLMARLSFCGPKVITHFFCEIPPLLLLSCSPTYVNSIMTLIADAIYGGINFVLTLLSYGCIIASILRMRSAEGKRKAFSTCSSHLIVVAMYYSSVFFAYISPGSSYNPERSKFTSVLYSVLSPTLNPLIYTLRNKDVKLALGRILASFSH", "length": 318 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4ADX2-1", "protein_name": "Olfactory receptor family 4 subfamily A member 80", "gene_name": "Or4a80", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGQSKIVTEFVLLGFTQDPAGQKALFVMFSLMYIATMVGNLLIVGTVIVSPSLGSPMYFFLASLSLMDAVYSTAISPKLIVDLLREKKTISFRACISQLFIEHLFGGVDIVILVAMAYDCYVAICKPLHYLIIMNRRVCILFLVMAWAGGFAHALFQVLAVYNLPFCGPNIIDHFGCDIYPLLLLACTDTYLIGLTIIANGGAMCIVIFILLLLSYAIILRSLQNHSQEGRHKALSTCSSHITVFFLFFVPCILMYVRPVSSFPIDKSITVIYTVVTPVLNPLIYTLRNSEMKNSMEKLLQKILSPNRLRLLCCLYY", "length": 317 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D4AEJ6-1", "protein_name": "Peroxisomal biogenesis factor 11 gamma", "gene_name": "Pex11g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLNGLASALESYRGRDRLVRGSVGPWRDRSDLEFGQDSEMRKTGQRGGPKGTDIGRLVSYMRTSYLSLPNCWPYKCVLALQIRTLGYGCQLIGGVLVEQCPSRSEVGRRLLVVSAQLSHCRTVLRLFDDLAMFVYTKQYGLGAEEEDVFIRWLSVLSNMADQLYYPCEHVAWAADAKVLQVDSARWWTLSTAFWSLSLLLGAVKSLWTMLKLRQKLRSPTGHFASQLPRSKWRAVEARIWSEALTLLSNLADLANAVHWLPPGVLWAGCFPPWLVGLMGTISSILSVYQAARAGKQAEVDSP", "length": 304 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D6R901-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 21", "gene_name": "USP17L21", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSNRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKMLTLLTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "E0CXP6-1", "protein_name": "UMAP1-MVP12 associated (UMA) domain containing 1", "gene_name": "Umad1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFHFFRKPAESKKPSGPEPEADGFVLLGATANEVRCKTSEAEGSQALETGKEDTSSVTVSGPETENQTGQTLQNNSLTAELLSDVPFTLAPHVLAAQGTISDLPDHVLSYDVGDNLSRFWYDFTLENSVLCDL", "length": 133 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E0CZF1-1", "protein_name": "PRAME like 34", "gene_name": "Pramel34", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGQTPPTHTLLTHEALIMSSLEELPTVVFPALFKEAFAGRHTNLLKAMVAAWPFPCLPVGPLMKKPNLETLQALLDGIDMRLTREFHPRRAKLQVLDMRNMYHAFWNIRADANDSDCKSKTLDEKQLVKVLPRYARRQRLKVIVNLSISSHFNKSKAYFLNWAKQRIGSLYFCCIKMRIWDPPDQVIRDIFNVFDPEHITELELNTDWTLLQLAHFASYFGHMKNLQKVFLAPLHKNTSPIINITNATEAKCVHKIISQFSQFNCLQHIFMKHVHFLRDYMNQVLGCLMTPLETLSITQCLISQRDFDLFSCSQNLFKLKHLEIRGMILYALDLMPLRVLLEKVADTLEILDFQWCRMKDSQINALLPALSQCTQLNQINFYNNDFSMCTLKALFQHTANWSKMNVEQYPAPLQCYSELGHVSVERFVQLCQELMYTLRAIRQPKSISFATDNCQKCGKPCVYDQGPILCSCFQ", "length": 475 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E1B8K9-1", "protein_name": "40S ribosomal protein S6", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLNISFPATGCQKVIEVDDERKLRTFYEKRMATEVAADTLGEEWKGHVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKCKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPHRLGPKRASRIRKLFNLSKEDDVRQYVVRNSLNKDGKKPRTKAPKIQRLMTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK", "length": 249 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BBD9-1", "protein_name": "RNA polymerase II subunit A C-terminal domain phosphatase SSU72", "gene_name": "LOC112445820", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPFLPLRLAVVCSSNQNRSMEAHNILSKRGFSILSFGTGTNMKLPGPARDRPNVYDFRAMYDDVYKDLLRKDKERYMQNGVLRMLERNMEKEMPRPERFQECKDLFDLILTCEERVYDQVVEDMNSGEQETCQPVHVINVNILDTNKEATLGAFLICDLCQCVQLMGDMEDRIGELLQAFEEKSGRSFLHTVCFY", "length": 195 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1BLY1-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIIRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLSSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E7F638-1", "protein_name": "Moesin b", "gene_name": "msnb", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSINVRVTTMDAELEFAIQSSTTGKQLFDQVVKTIGLREIWYFGLQYQDSKGFSTWLKLNKRVTAQDVRKENPLLIKFRAKFYPEDVAEELIQEATQRLFFLQVKEAILNDDIYCPPETAVLLASYAVQMKHSDYNSEHHIPGYLCRDKLLPQRVLEQHKLTKEQWEQRIQVWHEQHKSMSREDAMIEYLKISQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYERSDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKSPDFVFYAPRLRINKRILALCMGNHDLYMRRRKPDTIEVQQMKAQAREEKNKRQQERALLENEKKRRENAEKETEKIARETMELMERLRQIEEQTKKAQEELEEQTKRALELERERKFAQEEAEKLEKDRRIAEDVKTALLQQSENQTKNKDNLATELAELTSKINLLEDAKKKKEDEARKWQRRAIMVEVDLEKTKEELKSKLIGVHIQATSQTENDHDENDESSAEASAELTSTGSFRDRSEEQRITETEKNEPLQKRLQALSSELADARDDSKKTANDLIHAENVRLGRDKYKTLRQIRQGNTKQRIDEFESM", "length": 577 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FA22-1", "protein_name": "Protein tyrosine phosphatase type IVA 3", "gene_name": "ptp4a3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MAWLNGLYPVEVCYNSMRFVITHNPTNQTLDTFIEDLKRYDAKTVVRVCESTYDKTPLEKHGITVMDWPFDDGAPPPTKIVDDWISLLKKSFSEDPGCCVAVHCVAGLGRAPVLVAVALIEGGMKYEEAIHLIRLKRHGAFNSKQLTYLEKYRSKKRLRFKDPFKHRSKCWLM", "length": 173 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FE27-1", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase", "gene_name": "b4galnt4b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRMRFPLKKIRKQFKLLLLLVLLMFAIGFTYLHINQGKAIKLHFNYGKDMERQAEGIGSSPKKHLSSSINPFEHGDAADSQEDGWGGEELNESAQESRANAEMHTLLAQKFLGLPWKPEYKGQANLHVFEDWCGSSVSQLRKNLHFPLYPHTRTTVKKIAVAPKWKNYGLRVFGFIHPYKDGDFQFAIASDDNSELWLSSDESPLNARLLVYVGQHGSEWTAPGEFSKFRSQTSKPVRLMSSRRYYFEVLHKQDDRGSDHVEVGWRPFLPGQKFDVIDSAYISLYTDESSLKMNSVHHIPQTLASHSLALQIYHRTETHTADMLKPDPRDTFYKIPMIDQSRLENVLPSCVYSPTYVVKDFPIARYQGLQFVYLSYVYPNDFTRLTHMEKTNKCFYRESPVYLEKFGFYKYMKMDEEEDDQPVFFPKPDDFLEEEEGVDPEEAINSSNRPVKRSGPSYQTSRITAATASSKPDRLDGGSKSSVFQQEKQYVQFKEQERSKKRTKGERFYRHSQVVDDEMTEIRQVKGSTGVLESQSGSLNEQTGPSEENGDSQTLSLVQRGRSLAWVLPDPALQSESKLIETASPTVKERSPFKLPHLYVLANRILGNAGKPVVEKESNSNKIYITRPRPPVSRPKPPVEVFPGVFLYQSRKSKRLVDLSSKWRSLKTQAAASAPWANFPLMDHKTSTQSALLKQSHLSSPTEPGPHNKGDPTASISDPDSVPPSSSEKRDHPGLNSSSQPPEEEPTKISEMAEGLDVAPQSRGLEEGEMSEYSYEEAEVRPHLAEEAINWQRTFSVNPVDFELLRSDWNDLRCNVSGNLQLAENEVIDVISQFMERLNERNRGIYTLARIVNVEKRRDSARGNRYLVELLLMEGGKRLVRLSEYIYLLLHRSRFEEGIESREGTVPSSHRTPSKIPLPSGSSAQTHTTTPWSTSWAKPLLCQPIMLQWRHDVMVHFVVPVKNQARWVQQFISDMELLHRETKDENFSVIIVDFQSDDMDVEQALKESTVPRYEYLKREGNFERSSGLQMGVDTIEDSHSIVFLCDLHIHFPHNILESIRKHCVEGRLAFAPIVMRLDCGSSPLEPDGFWEVNGFGLFGIYKSDFDKIGGMNTEEFKDHWGGEDWELLDRVLQNGLEVERLRLRNFYHYFHSKRGMWNVPVKRASQG", "length": 1167 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E7FFR8-1", "protein_name": "Ubiquinol-cytochrome c reductase complex assembly factor 5", "gene_name": "uqcc5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MLRKSQNLKYMLSLVPGKKRFGVYRFLPVFFCIGGVMEWIMINVRIGRETFYDVYRRKQSERAYQQKTEEGLIMLTDSQAK", "length": 81 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9PUW9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r143", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PUZ0-1", "protein_name": "Apolipoprotein L 11b", "gene_name": "Apol11b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWNEISEDIRKVECRTFEKVIDNATEDLITDLRSLITEDGAWNGFVEAVELSSEEGEALRDALKERLAQDPTDENDRPQREQQKERFLREFPQLKKKLEDHIRKLRDLADKFDQVHKDCTISNVVSTSASAASGVLALLGLVLSTVTAGASLALSASSVALGATSSVSSFTTTVVEDSMTLSYESEARNLIGASMNVLEEILSIMPKITCKFYNTVADLVKAFKTLKGQIQTIRRARSISRRGAQARNLTSTGRSSGQGVSQMTRGARIRAGVFTSVFLGWDVYDLVTKQRICMMGEKQSQVEHCGTWLASWRRTFRNLSRSTMLCSQTCLSDALP", "length": 337 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PV04-1", "protein_name": "Eukaryotic initiation factor 4A-III", "gene_name": "Eif4a3l1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRAIKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI", "length": 411 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVP9-1", "protein_name": "Predicted gene 4884", "gene_name": "Gm4884", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENLQSSPFFGTESTLHPSLPLLSNSKQPAGTVCNFSRVSTPDVSSAWLLPSASSTSLQPLMVVQMETSLGLPPSGQTYCQLQSPELCNTCVQVSQIRPPAVNGDKALTAPIHSPSQFLALPPAPSLEQPENKTMPEIKEGTKENQDTPVLTLEHPDLQQPLHCTDTESLRQKPDSDNAHLGCICMGPKELVGLENEIGSSFDFKDITRFGADIQLPQLLNTLTDIDQDQSCENWRVTSGLFDQVRENKHKSFELLEGAPQAKFQHWDLVEGEGAVGVAGASDRAIDNMAKHPEGKAPKGPPSKNRRARKQEQERPSGPENKSKKTQELKQSRNRVKAEKEPSIPKTKRKRNPPELSQNSFKKPRTNLAMHMLESVQVFHPLGKKSEKKTGISSFRGLRTFTSNKDSGPGSVTTTVLNMPCESQGPPKSPGKVQSAESSVGKDCLSPSQYELPPAGKVKLVPLPFPTLDKPQSRPASRKPLSLALRRPTAVYPVQHHSHSVQPTTLRPAQPPPASSSLIASAKPAPPISSSATGPNVTNPNQSSAVPQLATSRPVPYRASSHTSFQRELVSAARNKVPSPPRPVPYRASSNTSFQRELVSAARNKVPSPPKPQTQYLLHDFSRQPIPWKKVDILGPVVSQPITKEQRPEREAMKRRSQQERENAVKNPSTGKLQIFLQRERDMEISQYYGYAM", "length": 694 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVW0-1", "protein_name": "Major urinary protein 8", "gene_name": "Mup8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCVGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIRVLENSLVLKVHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNAMDLVPEHVLVLTRQIAASRPENEEWPEPPVLSGDFSPGLHHHPFLSIQHPQYKFCDLHSILSH", "length": 235 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PVZ7-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKYFCLPRFSIISMLTGNGSFVTEFVLAGLTDRPELQLPLFYLFLIIYTVTVVGNLGLIILIGLNPHLYTPMYYFLFNLSFIDLCYSSVSSPKMLMNFVFEKNSISYEGCMTQLFFFLFFVISECYMLTSMAYDRYVAICNPLLYKVTMSPQVCSMLSFASYGMAFAGASAHTGCMLRLIFCNANVINFYLCDILPLLQLSCTSTYVNEVVVLIVVGINITVPSFTILISYVFILANILNIKSTQGRSKAFSTCSSHIMAISLFFGSGAFMYLNHSGSMNQGKISSVFYTNVVPMFNPLIYSLRNKDVKIALKKVMMRVHSRFIS", "length": 325 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW18-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r257", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPLSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PW59-1", "protein_name": "Olfactory receptor", "gene_name": "Or8b50", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALANGSFVTEFILLGLTDQPDLQMPLFLIFLIIYLITAFGNLTLIILIVLNSHLHTPMYFFLFNLSFIDLCYSSLITPKMLMNFVLEKNIISYMGCMTQFYFFGFFAISECYVLTAMAYDRYVAICNPLLYSVAMSPKMCSYFILGSYFMGFSGAMIHTGCVMRLTFCDGNTINHYFCDLLPLLQLSCTSTYVNEIELFIVTGKDIIVPTVIIFASYGFILSNILKIRSTSGRSKAFSTCSSHIIAVSMFFGSSAFMYLKPSSAVSMNEAKFSSIFYSIVVPMMNPLIYSLRNKDVKVGLKKTLSRMFSHNLISL", "length": 316 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXC3-1", "protein_name": "Cytochrome P450, family 2, subfamily c, polypeptide 69", "gene_name": "Cyp2c69", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDPFVVLVLCLSFMLLLSLWRQRSARRNLPPGPTPLPIIGNYHLIDMKDIGQCLTNFSKTYGPVFTLYFGSQPIVVLHGYEAIKEALIDHGEVFSGRGSFPFFDKVSKGKGIGFSHGNVWKATRVFTVNTLRNLAMGKRTIENKVQEEAQWLMKELKKTNGSPCDPQFIIGCAPCNVICSIVFQNRFDYKDKDFLSLIGKVNECTEILSSPGCQIFNAVPILIDYCPGRHNKFFKNHTWIKSYLLEKIKEHEESLDVTNPRDFIDYFLIQRRQDKGIEHMEYTIEHLATLVTDLVFGGTETLSSTMRFALLLLMKHTHITAKVQEEIDNVIGRHRSPCMQDRKHMPYTNAMVHEVQRYVDLGPTSLVHEVTCDTKFRNYFIPKGTQVMTSLSSVLHDSTEFPNPEVFDPGHFLDDNGNFKKSDYFVPFSAGKRICVGESLARMELFLFLTTILQNFKLKPLVDPKDIDTTPKYSGFSKIPPKFQMCFIPVE", "length": 491 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9PXM9-1", "protein_name": "F-box and WD-40 domain protein 24", "gene_name": "Fbxw24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLSSFPMMEIFSYLDAYSLLQVAQVNKNWNALASNDFLWRKLCQERWLFCDMVTLQLLGKETWKQFFVYRTWQEHVKSRAIPEDFTYKEIPLECGVRGYAGYISGCALTRNGQGKSVVCMVSSKNKISTWDISESVITWVSPVQPASIKLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLAGDILGNLYIFRIPDLHLISTVNVFPCGFDKIDCSPQKKWVLLSQNHPCIYPKVFYMSSLLRTSEFSDPVSTVLEFSLCKRAFWTPRREDRITLMSRRGRPIVTRFETFDMKLEENGNKTIVKGDLVASFSLQDYNENPKWMGVSDKSVIVCSTGSSLLLFSMKGLHLQTFQYSPEMIVRLWVDPVHVIITCNDGSIDVYMWEERSLLLKMCYRLQNGRHLPPFGFIKNLLCDDVSIVQLMIDRQGPCFLMAYTLNICS", "length": 466 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q069-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r157", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCHFEVGTVANVFLFVHNFSPVLTGYKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q0V3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r68", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGVAIIKENQTQSKMDFWNMGIKILFLSQTTTGILGNFSLIIYYVVNYIVHTLKPTDLILMHLMTSNALMVLSTGVLHTMAAFGLAHLLNDLGCRLILYIQRVGRSTSIGTICLLSIFQAITISHRVSCYKGQKIKSSKYIGYSISLLWVLHMFLNFILFVDIFIKRNRNNMTSDRDFKYYSIVERNEFSDSLYVALVVCPEIFSSVLITCSSGSMIGILYRHKQRVQHIRSFHVSSRNSPEWRATQNILVLVSTFLAFYTLSSVLQGCIALLNNPNWWLVNITRLTSLCFPTFAPCVLMSHYSFMPRFSLVWTWNKTS", "length": 319 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1C7-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A2", "gene_name": "Speer4a2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWMGETREGRKDADLPSKSNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHNLEMENMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIHQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 252 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q1N7-1", "protein_name": "Predicted gene 8126", "gene_name": "Gm8126", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNRNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKITQSINDTIEKYKEFIEDKDSYSFMHTYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEENRFCHESSKNIHPKY", "length": 198 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q328-1", "protein_name": "RIKEN cDNA 5430401F13 gene", "gene_name": "5430401F13Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSRILLVLLSIALLALTSAQRVNEDDGSALQEEDALEIGDSNQQHDDIHERLNEIKNHFQDQISQHGKEAIKSKKGKNGPRSRRSSDDDNLEVQDHQSGNEQAGGGQGGRGRSELKGQNGKGSQKGKKGKGGQQEQKGKGGQQKQKGKGGQKTKRGKGGQRSQQDNVQEVYQE", "length": 175 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q346-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r160", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSKLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q366-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4f2", "gene_name": "Speer4f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTMCVRLRRLFQRANVDGRETREGSMDAGLPCERNEGRRRWTWRMWMAHRQTSSPVPVTSNQFEKEEEELMEEIQLISQEKNGLRDYLNLTLGSKITRLNQSYEELKLKQKELMTLQHDLEMATMEAREENEELKKEINFYSNLHSRALMENNLIKKKLMTLQQESKEVQAEWASIQQHLDVNLSGKDEQENNSILDTQEHQVSETARELGLATDQEDSILQDELPPQEAPAEELSPQEAPAEELPPQEAPAEQLPPQEGPAEELPPQESPAEHHLQHPQSFSDESSYITYPEWE", "length": 295 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q3G0-1", "protein_name": "Zinc finger and SCAN domain containing 4B", "gene_name": "Zscan4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPIPDNAQMPVDTTQDRLLATGQENSENECNTSCNATEVNVGESCSGNEKDSLLITQKEQNHEHEEGNVVCQFPRGARRASQDTSSHHVDFPSALTPADVPMEEQPMDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKTDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQPISDPVLGKNHEANLPCESHQKRFHRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCITCQKIFKRVSDLRTHEIIHMSEKPFKCSTCEKSFSHKTNLKYHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 505 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q4E0-1", "protein_name": "RIKEN cDNA 5031410I06 gene", "gene_name": "5031410I06Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTFLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPSSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q501-1", "protein_name": "Predicted gene 2237", "gene_name": "Gm2237", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENVDEGETRPTEKEEGILSHEKGRRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSPAESRTWH", "length": 211 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q5G7-1", "protein_name": "Oogenesin-1", "gene_name": "Oog1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGYIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSAGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFSLGDSEKLDEETIFSLISQLPTLHCLQKLYVNDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPYCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELDSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPLECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVELL", "length": 496 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q6D7-1", "protein_name": "RIKEN cDNA 1700024B05 gene", "gene_name": "1700024B05Rik", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESHDNPVSAGRTSSQNCNITNHMKNMNKLDDMKFYIRKINAELEELFRILDIDMNTDLNYRMNTEFTIIKSQHEKTMLDMEKMKQSISDSIDKYKEFIEDNDSYSIRHTHLLKECNQLKEKVRMLLNENRKLLVEQADQEASFGEEKSSVMRPARTYIPSAKQQQL", "length": 167 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q7M8-1", "protein_name": "Predicted gene 5796", "gene_name": "Gm5796", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQSGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8A4-1", "protein_name": "F-box and WD-40 domain protein 28", "gene_name": "Fbxw28", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSVPMMEILSYLDAYSLLQAAQVNKNWNELASSDVLWRKLCQKRWLYCYMFTLPLHGLETWKQFFFDKTWQEHAKTRAKPEDFTYKEFPVEFEFRAHPWYISRHGLTRNGQEKSAVCMTSMNRISTWDIHEGAMTWESPKQPSYIVWMTTLPEMQIAVTIDMQSTIKLWDCHNKEVLASKTGLFFGCKLLQSEFTKDGPIVLVGDACGNLYIFRIPDLHLISKVNVFPYSIDELYFSPQKKWVFLIGHRLNDLTKVFYMSSLLRPSEFSAPVSTVLKVPVIRKVFWTPRREDRITLMSLILPKNITKFDTFDMKLEGIGNKVTIQGYLTASFSLAEDEGRPDYFGVSDKDVIVCSTRFSLLLFDINGLRLQTFHYCPEEIWRLWVDPVHVIVTCDAGSLDIYAWEKRSLLLRKCYRLRNRNYQQMSGYIIKTLCDDMSIISVANNSPKPCCLMAYTLSVCS", "length": 466 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8I6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r55", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDLVPKNPPTDLKCKLAHFFHMVARGTNMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVRYSCYSCWLFSVLNNAYIPMNVRGPKKSHNDSDSQGKRMCSISVVNVDMNYLQFSYDIIFIGIMVWTSVSMVIHLNRHHQRMHYIHNPNQSNRGHAETRAAHTILMLVVTFVSLYILNCICVLFHVSFVESRRWLRNVIEFLALSFPTISPLLLIFRDPRGPCSLYFNVGLEIHVTGKVITEEQ", "length": 310 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8L6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r132", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFFSVLSNIHIPIKVTGPQIIDNNTYDKSNLFCSTSGFIVGIVFLQISHDATFMSIMVWTSVSMVLLLLTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPNDPCSVLFKC", "length": 297 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8T0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQTGLGVLANTVLLFFYVFIILGHRPKPTDLISCQLSFVHIMVVLIGGDILLADIFESLNIGNDFKCKTTFYLFRVMRGLSICITCLLSVFQAVTISPNTSVLAKFKQKVKKYMTHVFLCIWFFNLSFSTNQIFYVGGFTNVSETNQMQVTKSCSLLPMNYIIRGLIFTISISRDVFLVGVMLTTSVYMVIFLFRHQRQCKHLHSFSHPRESPEKRATQTIMLLVSFFVVLYWMDFIISFTSEMLRMYDPVILTLQKFMMYAYPTITPLVQISSDNRIIIMLKNIQSKCHPSFSLKDFFFFI", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q8V7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r173", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSALNKALKTTEEVALQIILLCQVGIAAVANILLLVHNLSPNFAGPQLRPKHVILAHITVGNLLIILLTGFPSNIIVFVPRNPLNDLNCKLEYFIRLVARSANMCTTCVLSTYQFIVLVPGKWSRMILRGNTSTFVHYSCNSCWIISVLNNVYIPIKISGPWNTDNDTDLNSKWVCSMSGFELVMVFLRFVHDTMFISIMVWTSVSMMLLLYRHHQSLKHIHRSNGSLGLQPEARAAYTILMLVVTFVCFYLLDCMCIFFHISFVHFRVWLRHVNEILAASFPTLSPLMLIFRGPKKISAKGINTENAFINSH", "length": 313 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9Q9N3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r152", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFASKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFGSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHRQQMQHILTPNQDARGQAETRATHTILMLVVTFVRFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QAN3-1", "protein_name": "Predicted gene 1979", "gene_name": "Gm1979", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRETREGRKDADLPPESNEGRRRWTWRMWMAHRQKTSPVPVTSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHELEMKNMEARENKQELKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "E9QD93-1", "protein_name": "Granzyme K", "gene_name": "gzma", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDICRNLIVFHFLVFTFFKVTVCSDVSIVGGKDVKKALSWMVSIQVNQNHKCGGILIHKEWVLTAAHCKEDSYSSVTVLIGSLSLSKGSQRIAIHNYEIPETFNKKTKKDDIMLIRLSKKVKAKPYKIPKKEKDVQPGTKCVVRGWGTTDYKGKQASDKLQMLEVLVVDRVQCNRYYNRNPVITKDMLCAGNTQQHRGTCLGDSGGPLECEKNLVGVLSGSHGCGDPKKPTVYTLLSKRHITWINKILKQQFNSTRF", "length": 257 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "E9QLQ1-1", "protein_name": "Defensin, alpha, 35", "gene_name": "Defa35", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHDELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1LPT0-1", "protein_name": "Gap junction protein", "gene_name": "Gjc3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MCCSFLRQLLARESQHSTPVGRFLLPVLVGFRLLILVSSGPGVFGNDENEFMCHLGQPGCKTICYDVFRPLSPLRFWAFQVILMAVPSAIYVAFTLYHVIGYWEVPGRNKEQEAQICKGGRCKDVSGAMSLKLLWAYVAHLGVRLVLEGAALGVQYHLYGFKMPSTFICREDPCIGSTTCFQSHPSEKTILLNTMFGISGACLLFIFLELVLLGLGRVWKTYRHKLPLFKNLSTSERSVRHKDTTDDLSVVETKEPF", "length": 257 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LT33-1", "protein_name": "Cytochrome P450", "gene_name": "Cyp2b14", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVFLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFIDTYLLHMEKEKSNHHTEFHHQNLVISVLSLFFAGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVISSHRLPTLDDRIKMPYTDAVIHEIQRFADLAPIGLPHRVTKDTMFRGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDANGTLKKSEAFLPFSTGKRTCLGEGIARNELFIFFTALLQNFSLASPVAPEDIDLTPINSGAGKIPSPYQINFLSRCVG", "length": 495 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1LYQ4-1", "protein_name": "Alpha-1-B glycoprotein like 1", "gene_name": "A1bgl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLLVLLEPLASLTLTCKVCEPSKDLHRILHLSSMETACTLSLALPPTLPSASLIFSASGVHTLILLRVRLNHSLILLSLIHTGPLPRPWLSANPVPWITPGLRTFLLCQGTVRDVVFMLRREGDDGNKEKEQGIFQVHEPGNYSCNYYTNTEYTPSKPSGTVTIKEYVIPPPPMLTSLESSTVDEPEMTQMSLLCVAPLSDVEFQLRQGEREMKVLIVSTSPERASFYLKLSDMGDHSPFTCRYRLNRMTAWSEDSKPVQLMWSDETLPEPVLTVEPSPHQSFEPGSTVQFRCTAPKAGLRSEAGLRFGLHLEDLYDHRLLQTQKSSGNETVFQLRNVSATDSASYSCIYTELTPPYSGSAPSDFVILRVNGPPPPPKLQALWTGKVFAGHDVVLRCQSDVTGVIVELLRDGKFVPYRILRVLNNYSDLGLHSVGPQHTGNYTCRYTSWLPEPVQSEPSNPVELLVEGMASGVVVVGFCLLIFPGLCILVNCAI", "length": 495 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M6N1-1", "protein_name": "Zinc finger protein 945 like 1", "gene_name": "Zfp945l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTASLVNVSKCLLTFRDVAVEFSMEEWECLNYSQKTLYRDVMMENYNNLLFVENHCKYKKVLDQDPNSIVHNVNIYEKAYECNELVKMTHESSQGTPFKTKHKDASLQISTLNRQKIGNTRDEPCKFKDCINFLNVFVIRQNQRIYIGEKEPTTIEYENHYNSKHEVMLKQSNSTGNKPHIFRKYGQCFKIYSSFSRYQNDHTSEKFYKCIKCRKSFLHLSQLKVHYKIHYRKYPCKCTACSKCFYHTFGFKRHYSIHPEVNTYKSSDCDKSFIYYSSLRKHQKIFGGERHYECNEGLRSLYTVFQPVYYYIPHIGEKAYKCSECEKCFTRKYHLTVHQRIHTGEKPYKCGECDKCFTRKYHLTDHQRIHTGEKPYKCSECKKCFTRKYHLTDHQRIHTVEKPYKCSECGMSFMKKYHLRSHQSIHTGEKPYNCSECDKGFTYKGHLRRHQKIHTGEKPYKCSECAKCFTENSKLRRHQRIHTGENLYKCSECDRCFIENNKLRSHQKVHIGEKPYKYSEYDKCLTQKGSLRSHQLIHTGEKPY", "length": 544 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M7A9-1", "protein_name": "Large ribosomal subunit protein uL6", "gene_name": "AABR07026048.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MANRLAHRPIQWRNFLSQDSLDQDTMRKKTILSNQTVDIPENVDITLKGRTAIVEGPRGTLRRDFNHINVELSLLGKKEKRLRVDKWWGNGKELATVRTICSHVQNVIKGVTLGFCYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVWMRTNVACSVSQAQKDELILEGNDIELVSNSAALIQQGTTVKNKDISKFLDGIYVSEKGTVQQADE", "length": 219 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1M9J5-1", "protein_name": "Uncharacterized protein", "gene_name": "Esp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "ITFLPVTLFLIILLWPSMITEGRVLTQNQKELSISADHNKNHKSDLDKIEFQGQPNIQKAVEMTICASDKDQTLLEDQANANQDKQLYKDSHLLCGRSLDHIVK", "length": 104 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1QDL3-1", "protein_name": "Novel nacht domain containing protein", "gene_name": "LOC560232", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEDKHTPGDLDLSTGCSSVHQNRAEAEPSCVSMKSDVSMDPPTNFKSGNTGPAVSSRKRKRAEAEPSCVSMKSDASMDPPLKFKSKNTQPAVSVDRDDQSGDLLQDSLQPEHDELQRVKEQHKTTMKNKHERLFEGINHGETQTLLNRIYTQLYIIEGESEGVNEEHEVIQMEKRARTKPSQHTPVYCNDIFKASAGAGHEVKIKKEKAQIKTVLTKGIAGIGKTVSVQKFILDWAEGKANQDVDFMFVLPFRELNLIRDHQYSLHRLLLDFHPELEDLEPKIYEQCRVVFIFDGLDESRITLNFSDEEKVCAVTESSSVAVLMWSLLKGDLLPSALIWITSRPAAAHQIPSRYIKRLTEIQGFTEPQKEEYFRKRISDEHQASRIISHIRRARSLQIMCHIPVFCWISSTVLQKLLEEDVSAEIPQTLTEMYIHFLLIQINMRKQKYEERDPEKLLQSNRGVILKLAEVAFRQLMKGNVMFYEEDLIESGIDVTDALVYSGICTEIFKEESVIQQRKVYSFIHLSFQEFLAAFFVFYCHLTKKRELLELILGYSYDQYLQSSSEKSLYDLLSSAVDEAVRSSNGHLDLFLRFLLGVSLESNQRLFQDLLTHTEESSESIRRITQYIKDQIKSDDYFKRAAERFINLFLCLLEVKDQTLAREIQEFVKSDKHSEEELSPAHCSTISYMIEMSEEPLDEFELQKFNTSAEGRLRLTTAVRNCRRAL", "length": 725 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QGM0-1", "protein_name": "Galectin", "gene_name": "lgals1l1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPTVLIQNMAFKVGQTLTLTGVPKPESPEFTIDIGNSSEDIALHINPRFDAHGDQCIIVCNTFQNDCWCEEHRDENFPFVQGEEFQIKITFTNEEFLVTLPDGSEINFPNRQGSEKYKYMNFTGQARIQGIEIK", "length": 134 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1QMQ9-1", "protein_name": "Uncharacterized protein LOC541480", "gene_name": "si:ch1073-398c20.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MADIKQESDDIRIAEVFTLKQEDPEEQTDLLPLRKEFQGLDNVKEEEALVEEHQDITPAEKRITCSETENTTQKASEKTGSRSSFTCEQCGRDFAKQGTLNNHMRIHTGEKSFTCQQCGKGFTQKRTLRNHIRFHIEAESLSCQQCGESFTQKQDLTDHMRVHTGEKSFVCDQCGKVFLRKDGLEKHLKNHHKEKPHVCPCGKSFTDKTKLEEHTKTHTGEKPHTCDKCDECFSGKYDLIRHMRFHSAETPYICQQCGKSFALKRVLMTHVKIHTRDRPFLCKQCGKCFYRKDNFNRHVRVHTGEKPYACSECGKSFSERFQFNEHSRTHSGVKRFSCEQCGRGFNRKTELKRHMRVHTGEKPYMCPQCGKTYAFKTGFDIHMLHHNAEMPYICPQCGERFSVKQRFDVHMKIHAGNSDK", "length": 420 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1R1Q6-1", "protein_name": "Uncharacterized protein LOC641576", "gene_name": "zgc:152710", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MVLIWTQFGVKHKNVKCKVRVIHGEEGSWSSEEVREEPEVSSPPPSPECVDYYSVLGVSNDSNEEEIRKAYKRLALRYHPDKNSDADAEDKFKQIAQAYDVLTDPEKRNIYDQQGLTKGGVAPTCNKTDPSHNSKADAHSWHMFFNFDLDSDDDLFNPFTRNPLPHLSRHHGNKGGLKPAGDAEVHDLSVSLEDILMGVTKRVKLTRLRQTDKHTLKPEERVFDVEVKKGWKEGTRITFPNEGHQMLGHAPNDLAFVIKEKKHAHFRRDGSHIVYTCTITLREALCGCTVNVPTLDGQMKPLPCSDVIKPSSVRRLIGEGLPRAKNPAQRGDLLVEFQVVFPDRIPPSSKEIIKHSLGQC", "length": 360 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RA39-5", "protein_name": "[F-actin]-monooxygenase mical2b", "gene_name": "mical2b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MGETEEERTSQAGQLFENFIQATTCKGTLQAFSVLCRQLELNPSDHRGFYSSLKTAVTFWKAKGLWGKLDKRAGHKEYSKGRACADTRCLIIGGGPCGFRTAIELALLGAKVVVIEKRDTFSRNNVLHLWPYTIHDLRNLGAKKFYGKFCAGSIDHISIRQLQLMLLKIALIVGVEVHVNVEFVKLLEPPEDQSTDGQGWRAEIRPADNPVSDYEFDVIIGADGRRSTLDGFRRKEFRGKLAIAITANFVNRNTTAEAKVEEISGVAFIFNQKFFLELKEETGIDLENIVYYKDNTHYFVMTAKKQSLLDKGVIINDYIETERLLAFDNVNQEALLSYAREAADFGTNYQLPSLDYAINHYGQPDVAMFDFTCMYASENAALVREKSHRQLLVALVGDSLLEPFWPMGTGCARGFLAAFDTAWMIKGWAQGKEPLDLLSERESIYRLLPQTTAENISKNFEQYTIDPATRYPNLNSSCVRPHQVRHLFISGEQDLSSLERSGQTRRSVSISRRESEVRPGRLLLWCQNQTQDYRGVNVTDLNTSWRSGLALCALIHRQRPELIDFDSLNEADCAKNNQLAFDVAEREFGIQPVTTGKEMDAERGPDKLIMVLYLSKFYEMFHKSTQSVTGLPKEIDANNGDCSSKTANSLYNSINHARKRIPKLDKKLEESDVNRKRKKASSHHEELMSCQTAPPAGEREEQKENKVRSMATQLLARFEENAPSCALRRQSDSESDSDADRPVSLDLTENPRFARPKIEPTHPSTTPDKAKWQPSPYLRLLESNTRSETLHTEHYVESQSSHRLTEIQSECQYSSVSSAYKSSERRPRSPLIPFTPTLSPMMHCLQQLEEQVIQQRKREPLNRKSIKERAQKLSSLFTGNPAQPQTDESSPAVSPSSPPQTIPESSTLSCLLSPAPSLTHKQCSEASETHLKADKHTEIRRVERLDPSKQRTVGKVSSAIGVKAATLAILYETDHRPNNPITLSLTEARRCAESGLVSVRKEFSASLGGSDTCVFCQKRVYIMERLSAEGFFFHRECFRCHICGCSLRLGAHTFDSQQGTFYCKMHFSQRKTSTRHRRGEIQDGGIRSSSITISNHTSTDGTRGQPSGGEFDSSTQQDLQTLPDSKEIISVSEVKDSSKKADPADSAPACPDSPLQKVKRSTAKGEITNKNILWKKKIRSTLPLVLMKKFHRGKPEDKTEVLAEEDGNSDFEEIHESLSSKKPSNPSTDSNCLPTKDNSSTPLDEIPKIPLYRTHVLPEYPKPSSSSPEPIVTSISSDPISFSPKKKLTLSLSEKEKLLNWDLTNPGKSGAEEQQQQHVKPSISLQHDHPEPTHPQPEPAPPLFGFQQWANNLRKSFSKGSNPVVLRRNRPMKARPLSEGSFNVGAVFQDEERCGSLVDEGEARPRTESEIASLLEQVALGSKTSRGTKDDMASLPPRKLNFFSSLRIKRVEGAEQSRGEGQKDILSILSRFRNKASAQQQQQQKSNSSSEDEQEPKLTHSGALQKKKEKIAIRQTKSDELKRLHRAQVIQRQLEEVEEKQRSLEEKGVALEKVLRGENGDDGSTDEAALLQTWFKLVLEKNKLSRYESELMIFAQELELEDTQSRLQQDLRRRMATEDCEKSASELVEEQNILVEIMKVVEKRDKLVSLLEEQRLKEKAEDRDLESLILSRGYQFHWT", "length": 1679 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "F1RXL1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152495", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFTICNDSHSDFILLGFSDKPYLEKILFWVVLIFYCLTIIGNLVIILVSLKDPKLHIPMYYFLSNLSLLDLCFTSSCVPQMLVNFGGPEKTISYIGCAIQLYVFLWLGATECVLLVVMAVDRYVAVCHPLQYTTIMHPKLCLELAILAWGTGLIQSLTQSPATLQLPFCSNRRLYDIVCEVPALIQVSSADTIYNEIQMSIASIILLVVPLVIILSSYGAITKALLRVKSTEGQKKAFGTCTSHLLVVFLFYGTVTAVYLQPKSHYAHEQGKFLTLFYTVITPTLNPLIYTLRNKEVKGALIRLGKKTWDDLCWTIA", "length": 317 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD0-1", "protein_name": "Transcription elongation factor A like 3", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRQVKHLRSGSLPTPGLSVTSPSPTARPATPRTACLFPALCKTRKGEGTCPESLQDKKRRKNLNMEKLCKENEGKPESEGKPEDEVEPDNEGKSDEEEKPEVEGKSAHEGKLQNEGQPEDEGKPEDEGKQEKQGKSEDEGKPPGEGTMESQAKPESEPRAAEKRPAEDYVPRKAKRKTDRVTDDSPKDYEEDLQERHLGSEEMMREGGDLSRAQEELRKRQKMGGFHWMQRDVQDPFTPRGPRGVRGMRGGGRSQRGLHDIPYL", "length": 264 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1RYD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110258723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "LLVVVLVTYLLTLVGNTVIILIASIDPNLKTPMYFFLTHLSLVDICLTTSIVPQLLWNLRGPAKTITTLGCAVQLYVSLALGSTECVLLAVMAFDRHAAICKPLHYAAVMNPRLCQALAGVAWLSGVGNALIQSTVTLWLPRCGHRRLHHFFCEVPSMIKLACVDIHTNEVQLFIASLVLLLLPLALILTSYGHIVKAVTRIKSVQAWRKALGTCGSHVMVVSLFYGTITAVYIQPNSSYAHTSGKFISLIYTVLTPTLNPLIYTLRNKDVKGAMRRLFRRDLGS", "length": 285 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S4M2-1", "protein_name": "Small ribosomal subunit protein uS13", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSLVILEKFQHILRVLNTTIDGWQKIAFATTAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVEHVITIMQNPGQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLHEDVERLKKIRAHRGLRHFWGLRVGGQHTKTTGRRGHTVGVSKKK", "length": 152 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S6C0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGNCLTPHTSEDLLVPASATHLGGRRRRARSRERRPRDQVPGWAPAAPLVQEEQVRVPQRISQIQCLPKGVYKRDGSQEKMEQEECAICTLDFVCGDPIRSLPCKHFYHLGCIDEWLTRSFTCPYCRGPADGPQPSSRDTP", "length": 141 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7I2-1", "protein_name": "Beta-defensin", "gene_name": "DEFB125", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNLLLTFMICGLLTLVTKAGWNVERCWSYNIGHCRRRCLHLERYKHLCMNKRACCIPLSSDDPYTQWPLPPEDQTVGMKTPYFRPVSPGSELDDQITITITVDQESTGTEQDIEGTAISFQASTPIPENIEDTKFSDKANTLNLHKL", "length": 147 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1S7N4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100152708", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDQTNSSVVTEFVLVGLTQSLGMQFLLFLLFSTFYVGIILGNLFIVFTVISDSHLHSPMYILLANLSLIDLGLSSTTVPRMISDLFSDCKTISFHNCMIQMFFIHVTGGVEMVLLIAIAYDRYTAICKPLHYLTIMNPQMCMLLVVAAWITGVTHAVFQFAFVINLPFCGPNNVGSFYCDFPRVIKLACIDNYGLEFVVTANSGFLSTGTFFLLVVSYIFILVTVRQHSSKDLSKAFFTLSTHITVVFLFFLPCMFLYVWPFPTKSLDTFLAIVDFAVTPVLNPAIYTLRNRDMKVEMRRLSRQVISSREMT", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBB9-1", "protein_name": "DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MHALPAFESFLLFKDEKITIHKDTKAPNACLFTIDKEDHTLGNVIKSQLLKDPQVLFAGCQVPHPWEHKIIVPVQTTPDYTPQEALLNVITDLISKLSLLEERLRVAIKDKQEGIECWTGRGPAWPGPALTLALLQAPCG", "length": 140 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SBV4-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100154723", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MESENITVVTEFIFVGLTQSRNIQLLVFVLVFIFYLIILPGNFLIILTIRSDPGLTAPLYFFLGNLAFLDASYSFIVAPRMLVDFLSEKKVISYRGCITQLFFLHFLGGGEMLLLVVMALDRYIAICRPLHYSTVMNPRACYALSLAQWLGGFVHSIIQVALILHLPFCGPNRLDNFFCDVPQVIKLACTDTFVVELLMVFNSGLLTLICFLGLLASYAVILCRVRGSSSEGKTKAMSTCTTHIIVIFLMFGPGIFIYTRPFRAFPADKVVSLFHTVIFPLLNPVIYTLRNQEVKTSLKKLLINN", "length": 305 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SJ79-1", "protein_name": "Olfactory receptor", "gene_name": "LOC110259717", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEQNNGTKGTEFILLGFAGQHKSWPVLFIVFLVTYVVTLVGNIGMILLIKIEASLHTPMYFFLQNLEEKVDLCYATAITPKMLQNFVWTEHSISFIGCMVQLLTYGAFATSDCYILAAMAVDRYVAICNPLRYPTVMSQRVCIQLVIGSYFMGFLNASVNTSFTFQLNFCKSNKINHFFCDAPPILALSCSSIYFSIMLLAAFVGFNLTCTVSVVIFSYVFILAAILKISSAAGRKKAFSTCASHLTAVTLFYGTLSYMYLHHRTLESQEQEKLASVFYGIVIPMFNPLIYSLRNQDVREALKGVGKQCF", "length": 310 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SLL7-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRENQSSISKFLLLGLPIQPEHQGMFFVLFLVMYLTTVLGNLLIILLIRLDPRLHTPMYFFLSHLALTDVSFSSVTVPKMLMNMQTQDQSIPYAGCVTQTYFFIFLACIDNLLLAVMAYDRYVAICHPLHYAIIMREELCLCLLVLSWLLSCAYALTHTLLLAQLSFCADIIPHFFCDLDALLKLSCSDTSLSELVTFTAGAAVVIFPFIGILVSYGHIGLSILRVPSTKGICKALSTCGSHLSVVSLFYRTSMAVYLSSSGQFHDKDIIVSVMYTVVTPMLNPFIYSLRNRDMTLALGILFRNINIFSK", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SMZ6-1", "protein_name": "10 kDa heat shock protein, mitochondrial", "gene_name": "HSPE1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTRVVLDDKDYFLFRDGDILGKYVD", "length": 102 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SRB7-1", "protein_name": "Large ribosomal subunit protein eL31", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVVQKSGEKKRGRSAINEVVTREHTTSIHKRIHGVGSKKRAPRALKEIRKFAMTEMGTPDVRNDTRLNKAVWAKGIRNVPRRICAPLSRKRNEDEDSPNKLYPLVTCVPVTTFKNLQTVNEDEN", "length": 125 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F1SUB9-1", "protein_name": "Multifunctional fusion protein", "gene_name": "IL1B", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MATVPEPAKEVMANNGDNNNDLLFEADGPKEMKCRTQNLDLSPLGDGSIQLQISHQLCNESSRPMVSVIVAKEKPMNPSSQVVCDDDPKSIFSSVFEEEPIVLEKHANGFLCDATPVQSVDCKLQDKDEKALVLAGPHELKALHLLTGDLKREVVFCMSFVQGDDSDDKIPVTLGIKGKNLYLSCVMKDDTPTLQLEDVDPKSYPKRDMEKRFVFYKTEIKNRVEFESALYPNWYISTSQAEQKPVFLGNSKGRQDITDFTMEVLSP", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "F4IWB9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 28", "gene_name": "CYP705A28", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIMGRSCSEKNGEAERVRGLVIESLALSPKIFLGMIFHKPLKKLGISLFQKDIKSVSPKFDELLEKFLVEHEEKMEEDHYKANDMMDLLLEAMEMRMQNVNLCIKRVSNTKARKPPILFRYGKYSNNSLLLQELLVAGTDTSALATQWTMAELINNPTILERLREEIESVVGNTRLIQETDLSNLPYLQSVVKEGLRLHPPASISVRMSQERCELGGFYIPEKTLLVVNTYAIMRDPNFWEDPEEFKPERFITSSRSEQEDEMREEVLKYIPFSAGRRGCPGSNLAYVSLGIAIGVMVQCFDWRIKGEKVNMSETAGTIMLAMAQPLKCTPVPRTLNLLPSSLHIPSS", "length": 348 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4J311-1", "protein_name": "Zinc finger (C2H2 type) family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLDGVELLLDLREMVSQSGFEKSTTCSGVIALRSNLQSKSSHKCKICGKSFECYQALGGHQRIHRPIKEKLSKQEFSEVYPRKSKLQKRPESSSSCYECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEKFLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREISGKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISCSKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQRMHSGNHNRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSFMAEIEKHEVIEAALNLVMLCQGVYDFASISNLPLGDGFMDLELKPCPLRRKLQKKSRSSYKCSICEKSFVCSQALGSHQRLHRWKLVPKPEYIEDDSSLLDSSEAKKIVSKPSSFEHAQEEKILQCVEPKLEFHEQLAHSGFDKFDTCSKIRFSALPSPPEAKKIVSQPPSFEVSVDEKILYRAEPKLNFSEPLAHSCFDNSSSYRSIICGKSFVCSQALGGHQTLHRSIKGQLAGTEDGNSLSVTDSEASKIVAQPSSYKSQGI", "length": 650 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4JLV4-1", "protein_name": "Protease inhibitor/seed storage/lipid transfer protein (LTP) family protein", "gene_name": "DHYPRP1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASTTIILFLSFSIIPLLTIVRADNHSVYCPPPPPCICICNPGPPPPQPDPQPPTPPTFQPAPPANDQPPPPPQSTSPPPVATTPPALPPKPLPPPLSPPQTTPPPPPAITPPPPPAITPPLSPPPPAITPPPPLATTPPALPPKPLPPPLSPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIIRNVSDLDAVTCFCKSVGAPRFSLSPNFGIFFKVCGRRIPQGFSCPGPSPTISPPPLPPQTLKPPPPQTTPPPPPAITPPLSPPLVGICSKNDTELKICAGILAISDGLLTTGRAEPCCSIVRNVSDLDAVTCFCKSVGARRFSLSPNFGIFFKVCGRRIPQGFSCP", "length": 375 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F4K5R6-1", "protein_name": "Cell division cycle 20.6, cofactor of APC complex", "gene_name": "CDC20-6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MMKSIALALCLTHHSPMVLSIVDYGDSQEKTIDSLWKKPHGSDLTWSGFSRVGVTEAYFAVPVDHFLTNPPSLRLSQTIYCRRGSSYVETEKVEEEDRDDFLKQVWFLTDNLVFFFVDIEEYIVIEQLGDTVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTLRGGHESRVGSLAWNNHILTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVGDGKINFWNTHTGACLNSVETGSQVCSLLWSKSERELLSAHGFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTEPFAHVNHIR", "length": 428 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "F5H284-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase A-like 4D", "gene_name": "PPIAL4D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVNSVVFFEITRDGKPLGRISIKLFADKIPKTAENFRALSTGEKGFRYKGSCFHRIIPGFMCQGGDFTRPNGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICAAKTEWLDGKHVAFGKVKERVNIVEATEHFGYRNSKTSKKITIADCGQF", "length": 164 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F6R3J9-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1G", "gene_name": "Speer1g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNKKNKEVEIDWALIEKYLVDLNLNGQTGADQQP", "length": 157 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6X687-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1A", "gene_name": "Speer1a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWRARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKQSSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMPVTQNQKNKEVEIDWALIEKYLVDLNLNGRTGADQQP", "length": 157 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F6YNI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRCRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILVGLQDYQDNKADVILKYNLDEARSLKAYGELQEHAKINETDTFGPGDDDEIVFDDTGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7AMQ8-1", "protein_name": "Exocrine gland secreted peptide 8", "gene_name": "Esp8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKVSAMTSFPVMLFLIILLLPSICSEERTQADPTISADNKKNFKTVVDLTDCQCERNFIESLESTLPASNQDQTLFENMTNQHKLNLSKMLSVLSKCCTQKQQVDTVHFRRMPHRIQSTKQNNYKKQVLYPMQEFMNLTRDVLVSRYV", "length": 149 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7C9P2-1", "protein_name": "F-box and WD-40 domain protein 25", "gene_name": "Fbxw25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEIHLPSLPMLKILSYLDAYNLLQAAQVNKNWNALASSDVLWRKLCQRRWHYCDMVTLQLQGKETWKQFFIYRIWQEHAKTRAKPEDFTYKEIPVECGFYGYACYISGHGLTRNGQGKSVICMVSSKNTISTWDIHKSVITWVSPVQPASINLLTTLPDMHIAVTVDIQSTIKLWDCHNREALATNNLESPCKSLKAVISKDGPIVLVGDTLGNLYIFRIPDLHLISTVNVFPYGFDEIDCSPQKKWVLLSKNYPHILPKVFYMSSLLRTSEFSAPVSTILEFSLCQGAFWTPRREDRITLMSRSGFPQITKFETFDMKLEGIGNKVAVQGKLIASFFLPYYEESPNWIGVSDKDVIVCSTHFFLLLFTINGLHLQTFQYCPETIVRLCVDPVHVIVTCNNGSLDVYAWEERSLLLRKCYRLQNKRPLPLYGFINNLLCDDVSIVQLMRDGHGPYSLIAYALNICS", "length": 466 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F7ELE5-1", "protein_name": "NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial", "gene_name": "Ndufs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "RRTVVYTARARSQEKSGSEPLSLWFRFPLVSIWALDQNRNSLEDGPQRLSEGRGQDGGAGGSWLALCTDPGSAHRHSGSAAQSPPECGSHWEPEQSAVSKAGAGAVVPKPSHLPRSRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR", "length": 271 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7F947-1", "protein_name": "Beta-defensin-like domain-containing protein", "gene_name": "Spag11b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDLSQRPPNVFRHVVDFLKKNQTHITQACSGNSGGRKASSSDLCGCALCLEAPSPHSQLSYKRACSSCPPTRGSSVPAVPSTAMKQRLLPSFVNLLLAALLLPGKAETWLRSWTQALSAVVTLGSSSASSINHLVTEPPSSPQDEFPAQGGNGSGLLHHRVKRFPPRTPPYHEPGPNYQIVNCKKNEGFCQKYCNFMETQVGYCSKKKEACCLHPF", "length": 216 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F7FNC4-1", "protein_name": "Interleukin 36, gamma", "gene_name": "Il36g", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSKYPHSPCTASGKETPDLGQVSDVDQQVWIFRDQALVTVPRSHTVTPVTVTVLPCKYPESLEQGKGTPIYLGIQNPDKCLFCKEVNGHPTLLLKEEKILNLYHHPEPMKPFLFYHTLTGATSTFESVVFPGSFIASSKIGKPIFLTSKKGEHYNIHFSLDII", "length": 164 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VPX6-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 4A1", "gene_name": "Speer4a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVNGRETREGRKDANLPPESNEGRRRWTWRMWMAHRQTTSSVPVTSKKQFEKEEKELIKKIQLTTKETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHNLEMENMEARENKQEFKKEKNFYRNLHTRILLEENLIKKKLAILQQESKEIHADWAIIQERLVELNLSCKDEQEKTSNLETQENQVSEAARELGLATAEEDSILQNELPCQEAPAEHHTQNPPSSSDESSSDESSYSTCPAWE", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F8VQM2-1", "protein_name": "C-C motif chemokine ligand 26", "gene_name": "Ccl26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQFCVQPGAKWVQRFISLVNTRNHL", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3GSG1-1", "protein_name": "Ferritin", "gene_name": "LOC100767129", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGFLRKSHRRQRHRCPLRVSRATVAYPLVFMTPPIISPPSQVRQNYHFDCKTAVNNHVQLQLHNSSVYLAMAFYFDSEDVAQKNLASFFLNKSHECTAQAEMFLELQNQRGGRISLGSIREADRNNWLGGLQAMECALQLELSTNQSLVALHQLASSKSDAHLCSFLKNHFLTKQVEVLKEISGYVTKLRQMGSPDDGIAEYLFGKLTLDDNKGK", "length": 215 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3GWA3-1", "protein_name": "60S ribosomal protein L18a", "gene_name": "LOC100764432", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKASGTLREYKVVGRCLLTPKCHTPPLYLMRIFALNHVVAKSRFWSQLKKMKSSGEIVHCGEVRPEVPLQVKNFAIWLHYDSRNGTYNMCREYWDLTVTQCYRDMGAQHCARTHCIHIMKVEEIASGKCQRPAVKQFHDSKIKFLLPHRVLRCQHKPHFTTKRLNTFF", "length": 168 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H156-1", "protein_name": "Prefoldin subunit 4", "gene_name": "LOC100773780", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MVATMKKAAAEDVNVTFEDQQKINKFARDTSRITEQKEIEVKKNHLQNLEDTFNDIMLADGDCFMTQYLIRDVLISHSQEEAQEMLEEAKKTLQEEIDALESRVGAIQWVLANLKVQLYTKFGSNINLGVDES", "length": 133 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H2T6-1", "protein_name": "Histone H4", "gene_name": "LOC100757199", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3H8X2-1", "protein_name": "1-acyl-sn-glycerol-3-phosphate acyltransferase gamma", "gene_name": "Agpat3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MGLLAYLKTQFVVHLLIGFVFVVSGLVINFTQLCTLALWPISKQLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDIVKEGLQCLSDYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKGFTTTVQCLRGTVAAIYDVTLNFRGSKNPSLLGILYGKKYEADMCVRRFPLEDIPADENDAAQWLHKLYQEKDALQEMYKQKGVFPGEPIKPARRPWTLLNFLCWATILLSPLISFVLGVFASGSPLLILTFLGFVGAASFGVRRLIGVTEIEKGSSYGNQELKKKE", "length": 376 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HAB3-1", "protein_name": "40S ribosomal protein S15", "gene_name": "LOC100759804", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAEVEQKKKRTFRKFTYCGVDLDQLLDMSCEQLMQLCSTRQRLLLNCSLWRKQHSLLKSLRKAKKKVPPMEKPEVGKTHLRDMIILPEMAGSMVDVYNGKTFNQVEIKPKMIGHYLGEFSITYKPVKHGGPGVGATHSSRFIPLK", "length": 145 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDI6-1", "protein_name": "Lipid transferase CIDEB", "gene_name": "Cideb", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEYLSALNPNGLLRSVSTMGSELGRRVWNSGPPPQRPFRVCDHKRTVRKGLTAATRQELLDKVLETLLLSGVLTLVLEEDGTAVESEDFFQMLEDDTCLMALERGQSWSPRSGMLSYGLGREKPKHSQDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKKVLRELLRWTSSLLQGLGHMLLGISSTLRHVVEGAERWQWHKQNHLRS", "length": 219 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HDS5-1", "protein_name": "Histone H3", "gene_name": "LOC100773314", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HGI3-1", "protein_name": "PHD finger protein 6", "gene_name": "Phf6", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSSSIEQKKGSTRQRKCGFCKSNRDKECGQLLVSENQKVAAHHKCMLFSSALVSSHSDNESLGGFSIEDVQKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRKHKKTAHNSEADLEETFNEHELEPSSPKTKKKSRKGRPRKTNFKGLTEDSRSTSSHGTDEMESSSYRDRSPHRSSPNDTRPKCGFCHVGEEETEARGKLHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFGDFDIKTVLQEIKRGKRMKCTLCSQPGATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEEDEERESKSRGRLAIDQQLTQQQLNGN", "length": 364 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HJW3-1", "protein_name": "Calcium homeostasis modulator protein 6-like", "gene_name": "LOC100774768", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEKFKAVLDLQSKHRSALGYGLVTLLTAGGEKIFSEVVFQCPCSATWNLPYGLVFLLVPALALFLLGYALRTRTWRLLTGCCSWSASAQSSSGLQRVFVCAQISAAAALPPLTWVAVALLGGSFYQCAVSGSEAMARHLCKGRDPSCAAKLPQVPCKKQEAEMQDILSQLKAQSQVLGWILIAAIIILLLVVKSVTRCLSPVSYLQLKFWEIYLEKERQILQGEAMEHATQLAKENVRCFFDCTNPKDCSTPSSKAWQQISALYTFNPKNHFYSMLHKYVNRKDMSGSLRSVEGDAVVPVLGFVDASGMATTHGV", "length": 315 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQ40-1", "protein_name": "Eukaryotic peptide chain release factor GTP-binding subunit ERF3B", "gene_name": "LOC100767578", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MDLGSSSDSAPDCWDQVDMEVPGSAPSGDGFTSASTAAAEAAEAEAQRQHLSMAFSSQLNIHAKPFVPRVSAAEFVQSFLPGSAQPPAPTTSSSDETCTGAGDPQGKRLGWGAPVEPSKDGPLMSWEGSNSAVTMELSEPVVENGEVEMALEESWELKEVSEAKPGGSLGDSGPPEESGKEMMEEKEVIRKSKSMAIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVPFLKKVGFSPKKDIHFMPCSGLTGANIKEQSDFCPWYTGLPFIPYLDSLPNFNRSIDGPIRLPIVDKYKDMGTVVLGKLESGSIFKGQQLVMMPNKHNVEVLGIVSDDAETDFVAPGENLKIRLKGIEEEEILPGFILCEPSNLCHSGRTFDVQIVIIEHKSIICPGYNAVLHIHTCIEEVEITALISLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDEGKTIAIGKVLKLVPEKD", "length": 631 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HQN5-1", "protein_name": "Transcription factor 19 isoform X1", "gene_name": "Tcf19", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MLPCFQLLRIGGGRGGDLYTFHPPSRSGCTYRLGCRADLCDVALRPQQEPGLISGVHALLHAELQGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGQAGTSSSEFYFMFQQVRVKPQDFAAITVPRSRGEAGTGFQPMVPSQGAPQRPLSTLSSAPKATLILNSIGSLSKLQPQPLTFSRGGGRPQSLAVPTQPGEVGASPPAPPTRNRRKSVHRVLAELDDENETSLSPLSVLMEPRKKLRLEKAALVSSGRD", "length": 266 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3HWQ5-1", "protein_name": "Zinc finger protein 219", "gene_name": "Znf219", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MEGSRPRILVGHLEPSPPAFDGELDLQHYSNGPGVSTGSPGMGAVGWSETRAGERRFPCPVCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLLLELEERALLREAQLGRARSSGGMQATPATEGLARPQVPSSSAFPCPFCKGKFRTSAERERHLHILHRPWKCSLCSFGSSQEEELLHHSLTAHGASERPLAATSTPEPQPPPQPEPRSALEPEPEPEPRPEPEHEANPAPTPAPPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHTSKLGPLRAPGPGSTPARAPQPPDMSLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSVRAGEVRPNGEGADPGAGRSYGGGFRPLPSALPNRARRHRTEEPEEEEEVVEAEEESWARGRSLGTLTSLHPHPGEGSGQSAPAVGAQARPTGTQEENGLLVGGARSEAGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGSLKYHLQRHHREQRSSAGPGPPPEPPPPSPRGAASLQPQSGAKPTQASATWVEGTASTRPSSSGTGAGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGSGGALHRCLFCPFATGAPELMALHLQVHHSRRARGRRQPRADTSPPYVRAPSGETPPSPPLEEEGSPGLSRSGEAGLGGQER", "length": 725 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I071-1", "protein_name": "Large ribosomal subunit protein uL29", "gene_name": "LOC100753244", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKIKARDLRGKKEELLKQLDDLKVELSQLRVAKVTGSAASKLSKIRVVQKSIVRVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMHRQLTKHEEKLKTKKQQRKERLYPLRKYAFKA", "length": 122 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3I1Z3-1", "protein_name": "DNA damage-inducible transcript 4 protein", "gene_name": "Ddit4", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MPSLWDRFSSSSSSSSSSSSGTPATDRPPRSAWGSAAREEGLDRCASLESSDCESLDSSNSGFGPEEDSSYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLSQARLGSRRPARLLMPSQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVAQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLLSSANSSLVPGYSQSLTLSTGFRVIKKKLYSSEQLLIEEC", "length": 231 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IAH8-1", "protein_name": "Guanine nucleotide-binding protein subunit gamma", "gene_name": "LOC100755128", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASNNTASIAQARKLVEQLKMEANIDRIKLSKAAADLMACCAAHAKEDPLLTPVPASENPFREKSFCTIL", "length": 70 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IG76-1", "protein_name": "Olfactory receptor 7E24 isoform X2", "gene_name": "LOC100765597", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MYILALFGNLLIILTVSSDSHLHTPMYFFLSNLSMIDIGYISTTVPRVIVDIQTHCPVISYVGCLTQMSLIIIFACMDDMLLSVMAYDRFVAICHPLYYQVIMNPSSCGVLLLGSFLLSLVNLLLHYVAVLSFSNCEDIFEISNFFCGPSELFKLACFDTFTTNIVRYCAGALFGLLPISGIIFSYFKIVSSIMRSSSSSNGKWKTFSTCGSHLSIVCLFYGTALGMYFSSSLSLSPKTNAVASVMYTVVTPMLNPFIYSLRNKDIKTALRKILSRTF", "length": 278 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3IGD7-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100770882", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGANSSSLTPEFFVLNGIPGLEDAHVWISLPFCFMYMIAVVGNCGLMYLIGHEEALHRPMYYFLTLLSFTDITLCTTTVPNTLCIFWFNLKKIGFKACLAQMFFVHTFTATESGMLMLMALDRYVAICYPLRYGTILTNPVIAKASLATFLRSVAFILPFTFLTKRLPYCRGNTIPHAYCDHMSVAKISCGNVKVNAIYGLLVALVVCAFDIFCITVSYTMILRAVMNLSSADARHKAFSTCTSHICAIVITYVPAFFNFFTHRFGGHTIPHHIHIIVANLYLLLPATMNPIVYGVKTKQIRESVIKFFSGDKSGITEIKGLQNK", "length": 326 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3INQ1-1", "protein_name": "Olfactory receptor", "gene_name": "LOC100763177", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFCNTSTPGHSTFLLTGFPGLEASHHWVSIPINLICVVSILGNSIILFLIRTDPALHEPMYIFLSMLAASDLGLCASTFPTMVRLFWLGIRELPFDLCAAQMFFIHAFTYVESGVLLAMAFDRFIAIRDPLHYATILPHSAVAKVGAAVLIRAILLNLPGPILLRRLLFPQVSVLSHCYCLHCDLVGLACSDTRINSLVGLVSILLSLGLDSSLIMLSYVLILRTVLSIASPGERLKALNTCVSHLCIVLIFYLPKLGLSVLHRVEKHSYPALAVLMANLHFLVPPFMNPVVYCIKSKQIRQGFLKRFQQKRVDVS", "length": 316 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "G3MYE2-1", "protein_name": "Large ribosomal subunit protein uL18", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MGFVKVVKNKAYFKRYQVKFRRRQEGKTDYYARKRLVIQDKNKYNTPKYRMIICVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAVAYCTGLLLACRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGALTCYLDAGLARTTTGNKFFGALKGAVDGGLSIPHSTKQFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLTEDEDAYKKQFSQYIKNNVTPDMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLGQENDRVAQKKASFLRAQERAAES", "length": 295 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3MZM9-1", "protein_name": "Uncharacterized protein", "gene_name": "LOC107131211", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTRAEFKQTKLQELRRRLLIIVIGTLITGYMVTCTCLLHYRCDSKEAHKAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKLVSQVSPSYPEKAIKPTWPPSLQCRVKPTKTPLPYPKNQSFPEHSSADKLTKRQRYLKLKCPASAGRAEILSRPQPVKFCRCYKEKCLVCRAVSEPFITHVSEANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSPNN", "length": 361 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3UW31-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r176", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVTLQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQFVTLAPGTWGRVMLPGRAPNFLRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDSNSKSKWVCSTSGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFVDSRVWLRRVKEILSVSFPTFSPLLLIFRDPKDPCSLLFGC", "length": 304 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3UY92-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQLLLLCQFGVGTVAKVFLFVRNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVARSTNLCSTCVLSFHQFVTLVPLNRGKGKLVLRASVTNMASYSSYSCWFFSVLSNIHIPIKVSGPQIKDNNTDSNRKLFCSTSGFSVGTVLLQFAYDATFMSIMVWASVSMVLLLHRHRQRMQHILTPNQDARGQAESRATRTILMLVVTFVSFYLLNFICIMLHALFMHSHFFVRLVSEILTAVFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G3V9M0-1", "protein_name": "Cystatin S like 1", "gene_name": "Cyssl1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MACLLYTQLFLLNTFILFLNLSLNPVLGQILAGIEKSIIEEEGALEALNFAVSEYNENNSDLYLSRVVEVKTVKTVQQQIEAGKTLLFDVILGKTACLKTQDDLSDCPLNEPTDLQEREFCSFEVHLPDWANAINLLSSICNRI", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3X693-1", "protein_name": "Ig-like domain-containing protein", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "RVFLPLLLLGVILPGGDNEDGPTSFHLIQISTFVNNTWAQNQGSGWLDDLQIHGWESDSGTAIFLKPWSKGNFSDDEVTELVDLFRAYFIGFTREVQDRVNEFQLEYPFVIQVTAGCELHSGEAIESSLRGALGGLDFVSIQNHSCVPAPDGSSRGQKFCALTTQYQGISDIIERLLSETCPRYLLGVLDAGKAELQRQVKPEAWLSSGPTPGPGRLLLVCHVSGFYPKPVRVMWMRGEQEQPGTQQGDLMPIGEAAGLNCRVKHSSLGDQDIILYWGHPTSIGLILVAIIVPSLILLICLAFGVLRFMGSHRIGHD", "length": 317 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "G3X9Q9-1", "protein_name": "Predicted gene 6526", "gene_name": "Gm6526", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGDQGETRPRQKESAIPSCKKRRMKSFWGRHMSAGKKSSQNCNITNHMKNMNKLEDMKFYIRKINAKRLELFPILDIDMNTDLNYRMNIEFTIIKSQHEKTMLDMEKMTQSISDTIETYKEFIEDKDSYSFTHSYLLKECNQLKEKVRMLLNENRKLLVEQADQEASYGEEKRFCDESSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "G5E8X8-1", "protein_name": "Oocyte maturation, alpha", "gene_name": "Omt2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTLVFTKVHLESWVYKGLRGQHDSILELLKENLHHYLCIEFDEGLNDTVVYIIGFKFFAMFAMFVIVSLACNLRTKRNRARAWARGLQSPVWWNRRYFI", "length": 100 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ46-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLSFMSSLLENILYFQAGLGVLANIFLLVFYIFIILGHRPKPMDLISCQLTFVHIMMFLAGENFWLANIFESLNVENDFKCKATFYTKRVMRGLSICITCLLSVFQAVMISHRNSLLAKFKHKLKIYMINALFYIWTFNLSLSSNLIFYVGGFTNMSQTKQLKVTKSCSLIPMNYIIRGLILTVISSRDMFLVGVMLTTSTYMVIILCRHQRQCKHLHSTSHLRASPEKRATQTILLLVVFFVIMYWVDFIISSTSILLWMYDPVIMIVQKFVVNAYPAITPFVQISSDTRVIRVVKNWHS", "length": 303 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BJ88-1", "protein_name": "Vomeronasal 2, receptor 3", "gene_name": "Vmn2r3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMAIRKKCLILELTVFLCVELYAQYEDQNMTCRLMRKFNLTGYVEAENHHFVIGGQFPVHYRTIPTSDSDEEPESPMCEGFNFRGFRWMKTMIHTIKEINERKDILPEHTLGYQIFDNCFSTTKAMESSMVFLTGQDEYKPKWRNSTGKYLIGIIGAGGSTMSLAGARILLLNDVVQVGYASSSSILTEYLNVYRTIPSDKFQTEAIVNLIRHFGWVWIGAIASDDDYGKHGVKSFRKILETNNLCIAFSETIPKVYSNEKMQIAIDAVKSSTAKVIVLYATDFDLSPFVLEVIHHNIAHRTWIATEAWITSALIAKPEYFPYFGGTIGFAIPRSVIPGLKEFLYDVHPSKDPNDVLTIEFWQTAFNCTWPNSSVPYNVDHRVNMTGKEDRLYDMSDHLCTGKEKLKDLKNTYLDTSQLRITNNVRQAVYLMAYGLDRLIRVLIKEYREYLLHPKILAFMSYKLFEYIRKVKFTTHDGRKIELNVHGDIENGYYDILNWQMDNTGDIAIVKVGEYKFTRSKYELVLPKNSTLFWNTESSRLPDSVCTKVCPPGTRKGFITGQPVCCFDCIPCEDGYVSEKPGQRLCNPCSEDDWSNAEKNKCVPKHVEFLAYEEALGFTLVILSIFGALVVLAVTVVYVIHRHTPLVKANDRELSFLIQISLVITVLSTMLFIGKPCNWSCMARQVTLALGFCLCLSSILGKTISLFFAYRISISKTQLISMHPSFRKLIVLLCVFGEIGVCASYLVLKPPSMFKNIERQNVKIIFECNEGSVEFLCSIFGFDVLLALLCFVTTFMARQLPDNYYEGKCITFGMLFFFIVWISFVPAYLSTKGKFKVAVEIFAILASSYGLLGCLFLPKCFIILLRPKRNTDETVGGRVPTVDRSIQLTSASVSSELNSTMVSTVLDE", "length": 909 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BKT1-1", "protein_name": "piRNA-mediated silencing protein C19orf84 homolog", "gene_name": "Gm52993", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDELEDGALSNGDNLSLPSAGTESWPTSATPGLPPSLLSTLDPTHLGLPEQLASVTVPIRLDTLSYLLHSALLGTYNLQQSLPPCSCTAQPSHIWPDTVRRPPRRSGQARGGWEVRRRPSRGWGRGRGRGRVWAQSQRGPERAEERERNMAGEPGAGPSTPPVTPPSQDGQKEAGGLSEDWEADY", "length": 185 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "H3BLP0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNIENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSHLLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCKHLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQISSDKRVINVLKNLQSKCQQIF", "length": 302 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "I3ITL1-1", "protein_name": "Gap junction protein", "gene_name": "gjc4a.2", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSWDFLTHLLDEISNHSTFVGKIWLTLLIVFRIVLTVVGGETIYDDEQSEFVCNTLQPGCKNVCYDAFAPLSHVRFWVFQIIMISTPSVMYLGFAMHKIARMADNEYQPRKHKMLSTVHQRMNRDYDMVDEMTEEVPMIPEEIEPSEKDNKSAASTKTTAASDAAVKHDGRRRIKRDGLMKVYVLQLISRVAFEIAFLFGQCILYGFEVSPSYICTRSPCPHTVDCFVSRPTEKTIFLLIMYVVSVLCLALTVLEILHLGIGGLRDSFRSRANRRLPVHRPSTSTICHRLSSAPPGYQAVQKKYSSGKLKAEFLSDSGRESLADDNTTRDLDRLRRHLKIAQQHLDQAYHTEEVGASHNSGPDSKSIAAEQNRLNQAQGGFGSTEEKVFKEAHA", "length": 394 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "I3L8A5-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "FPSRQERTMRRENQSSISEFLLLGLPIPPEQQGVFFALFLGMYLTTMLGNLLIILLIRLDPRLHTPMYFFLSHLALTDISFSSVTVPKMLMNMQTQDQSIPYAGCVTQMYFFMFFACLDNFLLTSMAYDRYVAICHPLRYTSIMRGGLCTLLVTVSWILSCANALCHTLLLAQLSICAENTIPNFFCDLGALLKLSCSDTSFNDLAIFIAGVATIMLPLLCILVSYGHIGATILKIPSTKGICKALSTCGSHLSVVFLYYGTIIGLYLVPSSSTSSHKDIVASVMYTVVTPLLNPFIYTLRNRDMKGALEKLFHKAPVLS", "length": 320 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3L8Z8-1", "protein_name": "LRRC37A/B like protein 1 C-terminal domain-containing protein", "gene_name": "LOC100514982", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MMTLELEKLILPSHMACCLCQFKSNIEVVCKTVKLHCDRCLKNSTRCDKETSLGDVEGSFMKVLQARKKNTSTELMIEPERPSSDKSGVSLSSFMNEQLDFSDESDVISALNYILPYFSEGNLEDVESTLLPFIQLLFSNVAEADIPPGHLKTHTGNPPVNPESGTSGYTNKLRQLRFLENLLDAEIQEKIDEVMKKEKTAMLIYSNILSPKLRRQILRKKLETARTQAESLEEIESVDKRPLKVNRVLKGPRGIKKRHFRAMRRQSIRRKETAQPFVETTTKGSKLGGPSARELEQLWVVQRPRKRVADSLQKEPSFGREHKAEVSSFLKQYSRGRPAASIHPKAPATVKKTSEDLSDTLFVLVDANARVKNRKASETISYPRKIDSFHPSHSPVLHRTPEPQNRQAFRDKGSSYRLLLALRPLSSAVRSLINSPSQEASSPSGELTLQEQPSPESFSPSEPSTEHIISEKDTPQVVFEELPTSGTTTLSGPIPGPTAQGTLPTEYSATTADNVMPTGQHTSAIQWEHHNVGTDVASTPTSFISPGVSSPGSQFEAQLNQQLQSLIPNNDVRRLISHVIRTLKMDCSEPQVQLACAKLISRTGLLMKLLSEQQEAKASKAEWDTDQWKTENYINENTEAQGEQKESSELTKDVPGYGYNNKLILAISVAVVLMLLIVILCLIEVYSRRRTLREGKVGRRRGFFGFLLRKRRSGESESEGFFWRRRPLWLRDTYRPLSATRKKNMAEKLHDKESSDEEEIFHKGAGEVSEAPADVILTIESDVEDLGEETDTAPEGPPE", "length": 799 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LBH4-1", "protein_name": "Large ribosomal subunit protein uL11", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPPKFNPNEIKAMYLRCTSGEISAKSALAPKIGPLGLSPKEVGDDIAKAAGDWKGLRITVKPTIQNRQAQMEVVPSASALIIKAPKELPRDRKKQKNIKHSGNITFDEIVNIARQMRRCSLARELSGTIKEILGTAQSVGCNVNGRRPHDIIDDISSGAVECQAS", "length": 165 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LC12-1", "protein_name": "Olfactory receptor", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MFGANLTIFHPTVFILLGMPGLEIYHTWLSIPFCLMSIVAVLGIGALILVVLSESTLHEPMHVFLSMLAGTDNLLSTTTVPKALAIFWFHAGEIAFDACITQMFFIHVAFVAELGILLAMAFDRYVAICALLRYTAVLTPSTIVKLTLAIWGWGIGTIFPIIFLLKRLPYCRTNIIPHSYCEHIGVARLACADITVNIWYGFSVPMASVLVDVAFIAVSYTLILQAVFRLPSQDAQHKALNTCGSHIGVILLFFIPSFFTFLTHRFGKNIPHHIHILLANLYVLIPPMLNPIIYGAKTKQIRDSLAHMLSRVGMS", "length": 315 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "I3LEQ2-1", "protein_name": "All-trans retinoic acid induced differentiation factor", "gene_name": "ATRAID", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARPGFRSPSSLVPRAAALLLVLSVPRALALPEICIQCPGDVQNLSEVALYCKQTPELMLQGRCCLNGKGTILGLDLQNCSLKDPGPDFAQAHTAVIIDLQANPFEGDWANTFRGFTQLQTLILPQGVNCPGGINAWDVVTFYITNQTCQGQRTFATALGTQKRVLRMDLVLLMVLVSCSVFVLMASMATSVCARAHSHCSCSSVFWDPQHYPFPSCFGGLNAEKPRLHEPQRSSY", "length": 236 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "J3QM75-1", "protein_name": "Secretoglobin, family 2B, member 19", "gene_name": "Scgb2b19", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLITGELSFQTTEACVPFFEGYASVVSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLNNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMG8-1", "protein_name": "T cell receptor alpha variable 13N-3", "gene_name": "Trav13n-3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKRLLCSLLGLLCTQVCWVKGQQVQQSPPASLVLQEGENAELQCTYSTTLNSMQWFYQRPGGRLVSLLYSPSWAEQRGGRLTSSAASNESRSSLHISSSQITDSGTYLCAME", "length": 112 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QML3-1", "protein_name": "BTB domain containing 35, family member 29", "gene_name": "Btbd35f29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHQGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKKVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDALTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMQ9-1", "protein_name": "Predicted gene, 20873", "gene_name": "Gm20873", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRESSSNTLRNIVGRRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYLVKYDGIDSIYGLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFEGKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPGLYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANLSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMS5-1", "protein_name": "BTB domain containing 35, family member 2", "gene_name": "Btbd35f2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEDIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKKVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW5-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADIILKYSPDEARSLKAYGELPEHAKINEMDTFGAGDDDEIMFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QMW9-1", "protein_name": "BTB domain containing 35, family member 6", "gene_name": "Btbd35f6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLSCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYRDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLQTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QN64-1", "protein_name": "BTB domain containing 35, family member 22", "gene_name": "Btbd35f22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDMKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYIDNISFLESEEGLIFQPVFKKLRFQHIIWDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYNEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QNQ5-1", "protein_name": "BTB domain containing 35, family member 24", "gene_name": "Btbd35f24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEGIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKDTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIIYDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP08-1", "protein_name": "Histone H2A", "gene_name": "H2al1k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKKMQRRRRQKRTRSQRGELPLSLVDRFLREEFHSSRLSSSALSFLTSVLEYLTSNILELAGEVAHTTGRKRIAPEDVRLVVQNNEQLRQLFKPGGTSVNEDDN", "length": 105 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP87-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLEAMCFDGVRRLCNIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNQDEARSLKAYGELPEHAKINETDTFGAGDDDEIVFDDIGDEDEDIDDI", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QP96-1", "protein_name": "PRAME like 3C", "gene_name": "Pramel3b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMDTKDPPTLLDLATQSLLSNEHAAIQALEEIPRELFVPLFTAAFTGRHKNILTAIVKAWPFACLHIGALSVQEPERELLKALIESLQFLPALNSATRSPKLRILDLRQDAGCKTVCPDISTNSTICFRSCAHSEHSIFKIEGQESLSSSKSEAQPSRLPMELIVDISLDGTLRERNFFALLQNKVEQSLGSLHLCCRDLQINNLCECRHALSHLDLKCVDHLAVDESPLTEVTKLLSHTIQLDSLSLSKIACRSLNGRTFRNFITQLSRMNHLKELSLSSFCLTDHLETVLRVLSADLEFLYLPFCGLSYSDFKFLSECSQVSHLKLLNVNNNPIYWEDCEPFYYLLQNVSSTLQHLKICYCFLTDSTISVLIPALTRCSQLRVLHFYSNQITMGMLMRILELLTPLKELKHVIYPIPVHCYGRWHFQGSLDRQKVEDVQRQLNLMLQEAERSDMNWITYSD", "length": 463 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QPI8-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGWLEAMCFDGVRRLCHIRGKLTKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGAGDDDQIVFDDIGEDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "J3QQ02-1", "protein_name": "Eukaryotic translation initiation factor 4C", "gene_name": "Eif1ad11", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPKNKGKGGKNRRRGKNENESEKRELVFKEYGQEYAQVTKMLGCGRLESMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNPDEARSLKAYGELPEHAKINEMDTFGPGDDDEIVFDDIGDDDEDIDDI", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7GP63-1", "protein_name": "Large ribosomal subunit protein eL39", "gene_name": "RPL39", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL", "length": 51 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "K7N5V5-1", "protein_name": "Predicted gene 5862", "gene_name": "Gm5862", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLEENLIKKKLVILQQESKEVHADWATIHQSLVELNLSGKDEQEKTSNLETQEHQVSEAARELGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPEWE", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N660-1", "protein_name": "Predicted gene 10220", "gene_name": "Gm10220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRVNVDGRETREGRKDADLPSERNEGRRRWTWRMCMAHRQTTSPVPVKSKKQFEKEEKELIKKIQLTTEETNELRDRLIYVTEGSMNKRPYHRQTRHYKELKLKEKEIMTYLHDLEMKNMEARENNQELKKEKNFYRNLHTRILLGENLIKKKLAILQQESKEIHADWAIIQQRLVELNLSGKDEQEKTSNLEAQENQVSEAARKLGLATAEEDSILQNELPCQEAPAEHHPQHPPSSSDESSSDESSYSTCPSWE", "length": 267 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r168", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSQNGAMKTTEEVALQIVLLCQFGIGTMANILLFVHNFSPLLTGCQLRPKEVICANMAVSSILILFMTVFPNNVFVAQRNLLNDLQCKLEYFVYMVARSTNLCSTCVLSTYQFVTLVPGNFSELMVRGRSPKVISYSCCSCWLFGILYNVYIPMKVSGPQNRHNKTSTKSKWVCFTSGFSVGIVFLSFAHDAIFISIMVWASVSMVRLLYRHYQRLQYIFPPHQGNRGYAEIRAAHSIVLLVVTFVSFYLLHCICFILHIVFVDSNLWLRHIGEVLTSSFPTISPLLLIFRDPSYPCSLIFNYKKPVI", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6B7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Gm10670", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRGKSLKTTEEVALQIILLCQFGVGTMANDFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTVFPNNMMAFAPRNPPTELKCKLKFFSHLVTRSTNLCSTCVLSMHQFVTLVPISRGKLLLRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSKFFCSTSGFTVRIVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATNTILMLVVTFVSFYLLNFICIIFHTFFIHYNLFIRLLGEILAAGFPTISPLLLIFRDPKNPCLELFHCFKPESLQNLKHRRQLH", "length": 321 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6G6-1", "protein_name": "Predicted gene 16440", "gene_name": "Gm16440", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLCQKENGDEGEIRTTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKITKQRSKINELEELKLDMRKISNDMEEMGGILELYIYEDLNYRMNTEFNIIKSQHEKTMLDMNEMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLSEKVRILLNENRKLLVEQAGTQLSHEEEKRFCEEASKNICASSAKEQQCVNSSRNRNMAQTTT", "length": 218 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6J5-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r127", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLTAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6P1-1", "protein_name": "Reproductive homeobox 2H", "gene_name": "Rhox2h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKRSINYLLDVGPEEDEENANGVKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGPAAPVAGLMDNSNQEDLSATGCAQEKETQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPKFRHLWRHNFNVLQLQELESIFQCNHYISTTEENRLARSMGVSEATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6T9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r175", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGFGTAVNIFLIVHNLSPILNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCFLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVNGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSTNQKLRVHAETRASHTILLLVVTFVTCYLLDCICTVCNISFLDSRVWLRRVKQILDVSFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6U2-1", "protein_name": "Predicted gene 3542", "gene_name": "Gm3542", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCQKENGDEGETRPKKKEEGILSHEKGRRKSFWRRHRSARNTSTQNSNITNQISNINKVEELKLHIRKTSNERKEMCGILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRKLLVEQAGTQVSCEEERGSLRRPARTSVPQVQRNSSFPKCETVQQKLEHGTDHDMISLKEKCWWKRTGCAQEIHHCCLSSLITMAVMGCMLLLYFGFLGMNRP", "length": 270 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W5-1", "protein_name": "Predicted gene 17019", "gene_name": "Gm17019", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MALFARLCRLFQRANVDGRDTREGRKDADLPSERNEGRRRWTWRMWMALRQTSSPVPVISKKQFEKEEKKLIKEIQLTTEETNELRDRLIYVTEGSMNKRPYHRQNPLYEKLKLKEKEIMTFLHNLEMENMEAQENKQELKKETHFYRNLHSRLLMEENLIKKKSMTLQQESKEVQADWAIIHQRLVELNLSVKDEQENSNLETPEYQVSEAARELGLATAEEDSILQNELPGQEAPAEHHLQHPQSSSDESSSI", "length": 255 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6W9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r170", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLQNKSVKTTEEVALQVLLLCQVGVGTAVNIFLIVHNLSPNLNGSQQRPIKVILANLAVGNTLILLFAFPNNMTLFVPKDPPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLRGRAPKFVRYICYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKNKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHHRLQHIQSTNQKLRVHAESRASHTILMLVVTFVTCYHLDCICTFCNISFLDSQLWLRRVKQILDASFPTFSPLLLIFRDPKDPCSLLFCC", "length": 304 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r94", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVIFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6X7-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r103", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Y3-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFSPVLTGSKQRPRQVILSHMAMANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPKFVSYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSIILLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFYIHSRLFIRLVSEVLAAVFPSICLHNGVLLSY", "length": 295 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N6Z0-1", "protein_name": "Predicted gene 17026", "gene_name": "Gm17026", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "XRSSWVPKQACCPCSSGYFRERIEYTQTPDQGRRRPAAHHGGKGQETTGHGEGSAGAASPQAPTINDQEKRHERLEKLKRELQNIKNARDELQGILANYTNKDLNDRINFETFMLQMQHDQVMTDLKRMPQDISEALYKCKQLTKENQFYCFRNCHLLIESNLIQHKVRMLRKENRQLLREQIALEECNIETKILCKEGSQKIKDHYTKQQQI", "length": 213 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N701-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r159", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQLLLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVLVNRGKLILRASVPNLVSYSCYGCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNTRGQAESKATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAAVFPSISPFLLIFRDPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N708-1", "protein_name": "Predicted gene 10128", "gene_name": "Gm10340", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLHENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNTSVI", "length": 205 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N731-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r57", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALNILLLCHVVVGTVGNILLFVHNFSPNLTDSRLRPIQVILINLAVANAFMLLFSTYSYDLIDFVPRKPPTDLKCKLAYFFHMVARGTIMCSTCVLSTYQFVTLVPGNWARVMFREISPKVVSYSCFSCWLFSVLNNAYIPMNVSGPQKSHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFLGIMAWTSVSMVIHLNRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCIIILFHITFVESRLSLRHVTKLLSLSFPTISPLLLIFREPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N744-1", "protein_name": "Predicted gene 8104", "gene_name": "Gm8104", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLRRLFHRENGNQGETRPRQKESAIPSCKNRRMKSFWGRHMSAGKTSSQNCNITNHMKNMNKLDDMKFYIRKINAERLELFRILDIDMNTDLNYRMNIDFTIIKSQHEKTMLDMEKMTQSISDTIEKYKEFIEDKDSYSFTHTYLLKECNQLKEKVRMLLNENRKLLVEQADQETSYGEEKRFCDETSKNIHPKC", "length": 198 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N751-1", "protein_name": "Predicted gene 3696", "gene_name": "Gm3696", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPKKKEEGILSHEKGRRKWLWRRHRSARNTSTQNSKMTKKRSKRNELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPQEHLCPKCQGTAV", "length": 203 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K7N757-1", "protein_name": "Predicted gene 3667", "gene_name": "Gm3667", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKGRRKSFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNEKVRILLNENRRLLVEQAGHKCPVGKKRGSLRKPARTSVSQVPRNSSVK", "length": 205 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7F4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r260", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPTELKCKLESFSHLVVRSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASYSSCSCWFFSVLSNIHIPIKFSGPQITDNNTDSKRKLFCSTSGFSVGIVFLQFAYDATFMSIMVWTSVSMVLLLRRHRQRMQHILTPNQNPRGQAESKATHTILMLVFTFVSFYLLNCICIIVHALFMHSHFFVRLVSEILTAIFPSISPLLLIFRDPKDPCSVLFNC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r163", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVMTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLKFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPNICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7G4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r242", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSIHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9J7H2-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r256", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILGHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSLLVARSTNLCSTCVLSIHQFFTLFPVSRGKGKLILRASVQNLASYSFYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDDTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAESRATHTILMLVFTFVSFYLLNCICIIFHAFSIHSCLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 306 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "K9JA28-1", "protein_name": "Interferon lambda receptor 1", "gene_name": "IFNLR1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSAWRIRVLATLCFLWQPRVHGQLPPPQNVTLLSKDFDMILTWTPGEGSPPDVLYTVRYESKTRMDKWIKVPHCRNIHSVSCNLTCVIPNFFIKFRAQVKATSGRFHSPWVKSQFKEYHLDVELAPPLLNVNVKENVIHVNATFPMAICVESLPWMYDFNLWEAGSEDKKQYKSIFRKKAVTIDTTALRGNYCFNARSSIQSIDFKHSKFSQPVCMQLNYEGEWKFPFSATIPVFVLLILLTSASIIWLLKQDAKHKKMPQTLDLSNCKIAGPTFCCELRENEFLTDCLICTDKPMSQGKKNKTLAQNNQMWMASFLPSSSSEEEEEEEEEDSSSFIPYTEMLQFPRKHFNFQTPRTADAETILDSTSGVLSVVGGSTLDLSALGFSFFPIRKNEMDTSGSQGNEKASHSHSSSLGRISLTDVRFPGPREHGQHGTDSNDCLEVSLLHTLMNSSCTRLPADEHCLYKKDHDFTICYQKPTLDQPVQVSENPLLNEDPSMEKFIYLQTLQVAEDEGFASDCDSGNFTEGTPPASTVLSDELRISDMEKRYDKKFKFKGYQHSHYMRRS", "length": 567 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "L7MU37-1", "protein_name": "Reproductive homeobox 3H", "gene_name": "Rhox3h", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL", "length": 215 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU51-1", "protein_name": "Olfactory receptor", "gene_name": "Or4a76", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQSNNVTEFVLLGFTQDPAGQKALSVMFSLIYIVTMVGNLLIVGTVIASPSLGSPMYFFLASLSLMDAIYSTAITPKLIVDLLCEKKTISFRACISQLFIDHLFGGVDIVILLAMAYDRYVAICKPLHYLIIMNRRVCILFLVMAWAGGLAHALFQVLAVYNFPFCGPNIIDHFGCDIYPLLLLACTDTYFLGLSIIGNNGAMCIVIFTLLLLSYGIILRFLKNHSQEGRRKALSTCGSHITVVFLFFVPCIFMYVRPVSSFPIDKFITVIYTIVTPMLNPLIYTLRNSEMKNSMEKLLQKTLSPSRIRLSSCCLCY", "length": 318 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU81-1", "protein_name": "BTB domain containing 35, family member 17", "gene_name": "Btbd35f17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANTWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MU83-1", "protein_name": "BTB domain containing 35, family member 18", "gene_name": "Btbd35f18", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGKTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDQVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7MUB9-1", "protein_name": "Reproductive homeobox 2G", "gene_name": "Rhox2g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MERQSINYKLDVGPEEDEENANGIKTLMVLLAGEGRNEGESGRGLPGSGVSAAEGYRAGELSAGGLAAPVADLMDNNNQEDLGATGCAQEKEKQPEEPVPDSMGDLENVKPMSGPWSTVNPVRVLVPEFLHGWQQSFNVLQLQELESIFQCNHYISTTEAKCLARSMGVSKATVQEWFLKRREKYRSYKRL", "length": 191 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X6-1", "protein_name": "F-box/WD repeat-containing protein 15", "gene_name": "Fbxw15", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAIHLPCLPMMKILSYLDAYSLLQAAQVNKDWNELASSDVLWRKLCQKRWLYCDMDTLQLQGKETWKQFFIDRIWQERAKFRAKAKDFTYKEIPLMCGLFGYACYISGCGLTRKGQDKSVVCMVNSKNTISTWDVHKSVITWKSPEQPASIKLLTTLPEMHIAVTVDIQSTIKLWDCHNREALATNNLKSPCKSLKAVFTKDGPIVLIGDTLGNIHIFRIPDLYLISTVNVLPYGFDGIYCSPQKKWVLLSKKHPHILPKVFYMSSFLRTSEFSAPVSTVLKLSLYERVFWTPRREDRITLMSRSGFPQVKMFETYDIKLEEFGNKRIVKGKLIASFELQCHKVNPQRFGVSDKNVIVCSTESSLLLFDINGLRLKTFQYCPEMIVKLSVDPLHVIVICNTGSMDVYAWEERSLLLRKCYRLHIERPLPLYGFIYKAACDDVSIIQLITDELSLSSLTSYALNICS", "length": 466 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1X9-1", "protein_name": "Demilune cell and parotid protein 1", "gene_name": "Dcpp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSAPEGKNITSIRVFLKGRLIVGIQLNYDDNKDGQVYGSTAGKEMVARLSKEEHIIAAQGTYTPSALTQIIFTTNQPRQLMVGYYVGNSEYSSFPNDPSHVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 171 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y3-1", "protein_name": "PRAME like 51", "gene_name": "Pramel51", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIHSKERKYRLGLLEPGVTAFPCPNMVICLHCPDQDDSLEEVTEECYSPPTLQNLAIQSLLRDEALAISALTDLPQSLFPVIFEEAFTDGHIGILKAMIPVWPFPYLSLGKQINNCNLETLKAMLEGLDILLAQKVQTSRCKLRVINWREDDLKIWAGSHEGEGLPDFRTEKQPIENSPGCEVKKELKVTTEVLRMKGRLDESTTYLLQWAQQRKDSIHLFCRKLLIEGLTKASVIEIFKTVHADCIQELILRCICIEELAFLNPYLKLMKSLFTLTLDHIIGTFTLGDSEKLDEETIFSLISQLPTLHCLQKLYINDVPFIKGNLKEYLRCLKKPLETLCISNCDLSQSDLDCLPFCLNICELKHLHISDIYLCDLLLEPLGFLLERVGDTLKTLELVSCCIVDFQFSALLPALSQCSHLREVTFYDNDVSLPFLKQLLHHTALLSQLIYECYPAPIECYDDSGVILTHRLESFCPELLDILRAKRQLHSVSFQTTKCSKCGGCYIYDRHTQCCRFVEL", "length": 520 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N1Y5-1", "protein_name": "Olfactory receptor", "gene_name": "Or11g25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLSSPSNSSTITGFILLGFAYPREGQILLFVIFFIVYILILMGNASIICAVYCDQRLHTPMYLLLANFSFMEIGYVTSTVPNMLANFLSDTKVISFSGCFLQFYFFFSFGSTECFFLAVMAFDRYLAICRPLHYSSLMTGRLRNTLVTSCWVLGFLWFPVPIIIISQMSFCGSRIIDHFLCDPGPLLALACSRVPLIEVFWSIIMSMLLVIPFLFIMGTYILVLRAVFRLPSREGQKKAFSTCGSHLTVVSLFYCSVMIMYLSPTSEHEAGMQKLVTLFYSVGTPLLNPMIYSLRNKDMKNALQKILRT", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N227-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r125", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSMKTTEEVALQIILLCQFGIGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMSAFARKTPPTELKCKLEFFSHMVARSTNLCSTCVLSVHQFVTLVPVNRGKGKLILRASVPNFANYSCYSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N255-1", "protein_name": "Predicted gene 3099", "gene_name": "Gm3099", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSRLLRLCLKGNGDEGETRPKKKEEGILSHEKGRRKLFWRRHRSARNTSTQNSNITNQISNINEVEELKLHIRKISNERKEMCEILNVYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMTQFIIGSMQYSMELIEDNYSYSIKEDHLLRECTQLNKKVRILLNENRKLLVEQAGTQVSCGEEKRFCEEASKNICASSAKEQQLP", "length": 205 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N259-1", "protein_name": "Demilune cell and parotid protein 3", "gene_name": "Dcpp3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFQLEAMLALLILAFLGTPTVLTQDYHGPEVGKHSCTSTPEEKNITSIRVFLQARSIVGIQFNYDDKDGQVYGSTAGKEMVARLSKEEHITGVEGSYSPSALTQIVFTTTQPRQLMVGYHVGIYQYSSYPDDPSFVLKGACVSWRAGGIKSILFLWGSENSSCVKYGHSG", "length": 170 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N270-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSLKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILIHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIHQFVTLVPVNRGKGKLILRASIPNLWNYSCYNCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFAYDATFMIIMVWTSVSMVLLLHRHRQRMQHILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNFICIIFHAFSIHSHLFIRLVSVVLAAVFPSICPLLLIFRDPKDPCSVIFKC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N273-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r118", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVHDKSVKTTEEVALQLLLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMMAFAPKTPPNELKCKLESFSRLVARSTNLCSTCVLSVHQFVTLFPVSRGKGKLILRASVQNLASYSCYSCWFFSVLSNIHIPIRVTGPQITDNNTDSKSNLFCSTSGFIVGIVLQFAHDATFMSIMIWTSVSMILLLHRHCQRMQDILTPNQNPRGQAETRATRTILMLVVTFVSFYLLNCICIIFHAFFIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSLLFKC", "length": 306 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N275-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r169", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKSVKTTVEVALQILLLCQVGVGTVVNIFLFVHNLSPFLNGSQQRPIKVILANLALGNTLILLFAFPNNIRVFIPREFPTDLKCKLGYFIWLVARSTNMCSTCSLSTYQLVTLAPGTWGRVMLHGRAPKFVRYTCYSCWLFSVLNNAHIPMKVSGPQKTHNDTNTKSKWVCSTTGFSIGMRILSFAHDAVFISIIIWSSVSMVILLNRHHQRLQHIQSPNQKLRFHAETRAAHTILMLVVTFVTCYLLDCICTSLHISFVDSRVWLRRVKEILAVSFPTFSPLLLIFRDPKDPCSLPFSC", "length": 304 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N288-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r151", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMAVANALTLFLTIFPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILRASVPNFVSYSCYSCWFFSVLSNIHISIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVSLQFAYDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQYRRGQAETRATRTILMLVVTFVSFYLLNFICIIFHTLLMHSHLFIRLVSEVLAAVFPSISPLLLIFRGPKDPCSVLFNC", "length": 305 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2A6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r116", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVFLSHMAVANALTLFLTIFPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLAAVFPSICPLLLIFRDPKDPCSVLFKC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2B4-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r128", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKKRPRQVILSHMAVANALTLFLTIFPNNMSAFAPKTPPTELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNYSCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMTIMVWTSVSMVLLLHRHHQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVLGAVFPNICPLLLIFRDPKDPFSVLFKC", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N2C2-1", "protein_name": "Predicted gene 2974", "gene_name": "Gm2974", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSWLLRLFQKENGDEGETRPTEKEEGILSHEKERRKWFWRRHRSARNTSTQNSKMTKKRSKINELEELKLDMRKISNDMEEMCGILNLYMYEDLNYRMNTEFNIIKSQHEKTMLDMNKMIQSIIGSMQYSKELIEDNYSYSIKEDHLLRECTQLNENVRILLNENRRLLVEQAGHKCPVGKKRGSLRRPARTSVSQVPRNSSVI", "length": 205 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "L7N474-1", "protein_name": "Spermatogenesis associated glutamate (E)-rich protein 1E", "gene_name": "Speer1e", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "ARRHTSSTAPDLSKKEFKKEKERLTTELHLLIQLRNEQRDHLIDFKESSNYNRTKPTQKKNPFYEQLRSTKNQVLSSVHKLEMGIIEAQENIQELNKWIDYFTNLHSQLLMEKNLKMSITQNQKNKEVEIDWALIEKYLVDVNLNGRTGADQQP", "length": 154 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0QWR4-1", "protein_name": "Aly/REF export factor family member 14", "gene_name": "Alyreffm17", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRPKQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYDRCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGMTRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQKQQQQLSAEELDAQLDAYQEMMDTS", "length": 261 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "M0R3T3-1", "protein_name": "Peptidase S1 domain-containing protein", "gene_name": "ENSRNOG00000067174", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFLVLCLILSLGDYGAFPLIQSRIHRGCKGERHSQPWQVAMYHYDKAVGWGWHPSPTTMSTSPSHNKVRLGQHSLDADGDTGQDVPVRHSIPHPLYNRSLQMPTFLSPDADNSHNLMLRQLREPANTTEAVRVTEEPTEEAKLGSRCLASGWGSTRPDKCMPGMLQCVDLTLMSSDVCTYAYSQRVTESMLCAGHQEGSRDTCMGDSGTTLICDRMLQGITSWGGNPCA", "length": 230 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R777-1", "protein_name": "non-specific serine/threonine protein kinase", "gene_name": "Smokwl5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASKSKEKTLGSHYKILSYLGQGSFGTVNLAWHLKTQALVAIKMLEISKETISSILSERAILETLHHPNIIRLFQVLITSSHVNFVLEYAPGGSLFELIKEGGPLQEEVAKKIFGQTVSAVKYCHNLDIVHRDIKPQNILTDAEGNGKLTDFGLATKFRPGTLLKELCGTKEFYAPELVLREPYNGKKTDVWSLGVLLYFISTGYCPFRGVTTKDMEKKIATGTYTIPTYFSGQLENLIHQILTVSPEMRPSIEDIEKHPWVRKCEVNIPTITCPDYKIVEMLCGMGYNANKILESLQKKKYDEPMAAYLILKDKVRQEIEHGTTTSDMPVDQGPLPPQSPAHHSVSGLPLKRRASEPNFGLLHIWPPGEQVARHNVARSVSMPPIALYGTKKQNSTSTSALHSRPVASPCVCNTILEIEIPLPTKQDFDMKTSSPPQRIGYFQRLCQRIRDCLSRLCCFLWAPKVHSPRKWLP", "length": 474 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9M1-1", "protein_name": "Olfactory receptor family 52 subfamily N member 1B", "gene_name": "Or52n1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLLNVSSLTPASLILNGIPGLEEVNLCIFFPLFTMYSIALTGNFGLIYLIYSEEVLHRPMYIFLALLSFTDVLMCTSTIPNTLFISWFNFKKIDFKACLAQMFFVHTFTGMESGVLVLMVLDLYIAMCYPLRYATILTNVVIAKAGMLTFLRGVALVIPFIFLTKRFPYCKGNVIPHTYCDHISVAKISCGNVQINAIYGLMVVLLIGDFDIPCITVSYTMILWAAVSLSSADARQKAFSTCTAHICAIVITYVPAFFTFFTHRFGWHTIPSHIHIIMANLYLLMPPTMNPIVYGVKTKQIQKRVIRFFFKGRENSSHKF", "length": 321 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0R9X6-1", "protein_name": "Paired immunoglobin-like type 2 receptor beta 1 like 2", "gene_name": "Pilrb2l4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAWILLLLLLAACLHTGNSAGYQKTQDYGVNQPEQLTGIQGGSIEIPFSFYFPWELAKDPQMSIAWRWKVFFGEVIYNSTLLFLHEHFKGRLIMNWTQGQTSGVLRILNLKANDQSTYFSRIFLQATEGMKLWQSRAGTKLIIHALSTTMASPSIIPSAVPTAGLENTRGQRNPSLLNLGAMVGMVMAKVVVIIPLYGWVIFLWWKQRLPTARISHQVSLHHTPCIPQSSMSSLWESELVAAGFSCESHSWITPTSAMGARIPSPWNQGPPVCLWA", "length": 289 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RAD6-1", "protein_name": "Olfactory receptor", "gene_name": "Or1f19f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRSTNQSSVSEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILVISTDSHLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILSSQAISFSGCLTQLYFLCVSVNMDNFLLAVMAYDRFVAICHPLYYTTKMTHQLCVLMVSGSWVTASLNALLHTLLMARLSFCGDNIIHHFFCDVTPLLKLSCTATNLNELMILTEGAVIMVTPFVCILISYIYITNAVLRVSSFRGGWKAFSTCGSHLAVVCLFYGTIIAVYFNPVSSHSSEKDTAATVLYTVVTPMLNPFIYSLRNNDLKGALRKVVHRKI", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RBH5-1", "protein_name": "Surfactant associated 2", "gene_name": "Sfta2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPSMCLFLLLTLLCSSLAGPTKVTLQVKLTEASQAKTSQDSGFLDMLQKICLLLHLSPGTNVTLHHKGPPHHLTCRA", "length": 78 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCJ6-1", "protein_name": "EF-hand domain-containing protein", "gene_name": "AABR07013776.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MADQLTEEQIAEFKEAFPLFDRDGDQTVTTKELGMVMGSLGQNPTEAELQDMISEVDADGNGTINFPEFLTMMARKMKGTDVEEEIREAFRVFDKDGYTSAAEFRHVMTTLGEKLTDEEVDGMIREADMDGDGQVIYEEFVQMVTAK", "length": 147 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCP1-1", "protein_name": "Leukocyte immunoglobulin like receptor B3", "gene_name": "Lilrb3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVSTLTALAYLGLILGSENPVLSGAFTKPTIKMVPSNVVTTGKQVTIFCEGSSHAKEYRLHKEGSPDYLTPTTFLETENKAKFSISPIQWNNAGQYWCSYRSLTNKLRQSDIMELVVTGVILGEVTLSALPSYVVTSGRNVTLQCASQVVYDRFILMKEDEKFSTAMPSWKIYPVLWGAIFTLGPVTSNQRWRFTCYGYYLSSSLIWSKPSNHLELLVSGTLHKPILWAHPGSMVTSGSPVTIWCEGDQETQTYVLYRQGSLESWNRQTQKDYNNKAEFTIPSVTYLNAGHYFCYSYTSAGWSEHSDTLELVVTGVYKKPIFLALKNPIVNLGVTVTISCTSNQSFNCFLLMDDDQKIYRFFDLQYSYSGESLARFQVGPITSRQRWRFRCYGYYTDNPQVWSEASDPLDFLVSGNLQKPTLWAEPGSVIESGNSVTIWCEGTMETQIYFLYKEGSPSSWLRQTPKEPGNKAMFFIAFMEKHNAGQYRCYCYNFGGWSQHSDTLELVMTGVHHGKPTLSAFPSPMVTSGGNVTLYCASSTIYDWYIVTGQDLKFSRFQRAQFIPTEMSQALFSEISVASRKKGPFRCYGFNESTPHLWSEASNPLEIHVSGVSRKPSLLNQQGPVLAPGENLTLRCSSELSYDRFSLSKEGRSDLPQLSVSQSQTGEYYANFFLYSVDFSIAGQYRCYGASRFSSEWSAPSVPQDILVTGHPPITPSLSVNPGTIVSSGENVTLLCQSSIPMDTFFLFKKGDAYPYMHQRLKFQGPQCKAEFSLSAVTPNIGGIFTCFGSQSSSPYLLSHPSVPVEIKVSGLAKYQKSLIWVSVVFFLLFFVLTLFFFLRLWHQNKHRKGVQTKIDLQHPEGAVEPKSIVGHLQKSSRPAPAIQEEILCEKRWPGREITEVSASDATVKVTRSADNVELGILSQHQDDPSIHLYAQVKPARLRRAQTTSSSLFPKELQHSKHRQKNRDQVIDQQADTSQDSHAVIYAQLHIMTPRQGRQTSLFPGRIC", "length": 1008 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCQ2-1", "protein_name": "G-protein coupled receptors family 1 profile domain-containing protein", "gene_name": "LOC100361204", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQSSIP", "length": 328 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCW7-1", "protein_name": "Uncharacterized protein", "gene_name": "Pilrb1l3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALLVSLPEQNLAMAQLLLLLLSAACLHTGNSAGYPKKNVFSVDQPAVLSGVQGGSIEISFSFYFPWELAKVPQMSIAWRWKNYHGEYIYNSTQPFIHEHFKGRLIVNWSQGQTSGVLRILNLKENDKATYFSRVFLPTTEGMKSWQSVAGTQLIIIHAPSTTVVSPSIIPSVVPIAGLEDTRGKRTPSLLNLGAMVRMVVSKVVVIIALYGWVIFLWWKQRSAWSLLSFLTTWKSEEQMQMNTAPAPKEFK", "length": 252 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RCY4-1", "protein_name": "Retinoic acid early-inducible protein 1 domain-containing protein", "gene_name": "AABR07000137.1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSAPLGSLGRKSKNQSLGLDMLGTVLSTDSLSCTFTVKYRSSPGQCSVNGKPLLLFNDERQNSPVGKPEKKGNATKVCAELNQSLKDIFQKMMNLESWLFESKGNHTLQVTVQSQYNQGIFMDGCWVFTIDRQYPFYFYPKIMTWRESHPDASRTVSQWQNNRQVAQSLRTCSMGDFSQCLRKLLTDSREVPRSTITTLDPTQPSSAIQIPPTVDSASSVFTTWSQYIFVLILCLAILIINALIP", "length": 246 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RD07-1", "protein_name": "Uncharacterized protein", "gene_name": "ENSRNOG00000064269", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRMMAMQMMTNSISDAMERYKELIQVNSSYNIRQSQLLREQAQLKNNIQILLNEKRELLVEETELPASSVEAKRLCEEAGMNICDPRAKQQQV", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M0RDP5-1", "protein_name": "Zinc finger protein 353", "gene_name": "Zfp353", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDVAETPGASQTVPCNTQPSPVESSQLVSGQSSEMPTWKKTVMASACCNPQETACTQNSTAHPGKASDFYFGEPSETASFIQQVVSAEQKSSPAGSCLMNLSSTTKSCLSHPLKTEVLDTRKTLCNEGHWGRTLNSDKTLLIQITTMYESQWRTLGNHPVAPSGYHEGQAPNMDHLVDSVSNQTFIGDLEMEPSCNHVLYTDQFITSFSEQNPFGDQQRSPVADNRFYADQKILPNGYQTFYEPQMSTNYQITCVCGQNVCRCQEILLSGEHLLSEYQTSGYRYDQDLIVNLQVTSPIGGEPLHDSQIPNSNFDTTSCGTKRTTSSEEDNLAWHPETSLSSEETFLDQMRTSVDQNVYPSHNGTLKIEESLEPQVTSLSNQAPYVGESSDTSNSPLIQIQPQEISSASGLDQGQHPEIKLDLKTQSPVSLKNPHNSKRYCCTYQGCKKSYKKSQHLKDHMKKHTGVKPYMCNKPGCDWKFFRLVDLNRHKQKHSGERPYPCPMCNKNYSRFYYLKQHLRSHIQASPTTAT", "length": 530 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "M9MSI7-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG42818", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFIHQREQLPFKHNEQDPNYLAPVIQKRKPMDKDPRNPLKRLKFLQEFPTQSSKGDLDDLKYPTQLEGRHDSPKYDKTFHTEIHANNETDSQELENIILEKNLQDSKTEFQENRASQPKNMHSFQIPEAIESHFNNKELQNENDLHKGLKQQYRSGSEQDKSGPENVREIASKLILQWAENQRSLLDSFVKAITDVLKVHDSKLNMKINISPRDIMILKDMLKQLLESIMQLREGSTSTRARIVLNKWIETQKSLIDSFSQAIQNTNQNVDNIANVYEVMENLNKNLRELVILLSDKESFPTTESSSSQQTTSIYATTTFYLTSSTFGSTHPIVDENINRVNIMGNLIKGLRNIMVQMDETNKTSSSTSYTTTESTYIQPSTSTYLNAEVTTSHPTTSTYEVTNIITDESKIKDMFNLIKGIEDLISQYNGKHKFTSTTSLTGKSNSREPTMTTYSSAGGITSHSFTTTSPKTVTTSSSHSTTESSPSHPTTSNYEVTVFDQDSHKFKVMKNLIKELKGLIEHFSDTKNITSTTYSTGDSKSFQPTATTPDSTDRSSSQPITFPESTTSTTNLQSTITNHLSTESTSSQLNTTLSITGTTTPNLTTSTHDFKDQINDDDSKSLKHLIKILSDLVYSLNDKNNIKSTSQLTTESTFNSSINITNSTTVASSTFSTTESMAIHSTPYLSTREITVFQFNDVENINPIISNNSTTVTTNIHSSTYTTSTTDNTTSYPNLSTTESSPTFDSTISHSNTSSQTRSLGSYKDKIKNIVELLKKLRKIQKTLADKSKGQLSPMLISRIKAVLKQIVAGNIDSVNGDSTELEILLSTTVNPNEDTTDLTMEKLLKLFDDFERMYNVLLDDSIQSTTQSTTQNNTIFSTTYSTIFSTTQSISTTSPTQYALTSSTPNTSTTSHSSTPSSINNLRSDESNNHQPIVDAIQQLKMALYHDFYAFKKSQEERMEKILQLLNGKPIDRRTKTIAKPRTIRKKVSREIQKRNSDVKEDKIHHYKADKFIKNPKNGNQDSHIPKPILNSARSKIKDVPLKLSAIKVNGGLKHLPSKRKANEEVSAMHEIFPEPVSILPHK", "length": 1085 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "O08640-1", "protein_name": "Keratin-associated protein 14", "gene_name": "Krtap14", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCNSCSGTFSQSFGGQLQYPISSCGSSYPNNVFYSTDLQTPITHQLGSSLHSGCQETFCEPTNCQTAYVVSRPCQRPFYSQRIRGPCRPCQSTFSGSLGFGSRGFQSFGCGYPSQGFGSHGFQSVGCGTPTFSSLNCGSSFYRPTCFSTKSCQSVSYQPTCGTGFF", "length": 167 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O21032-1", "protein_name": "Large ribosomal subunit protein uL16m", "gene_name": "mrpl16", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIPNRQKFTKNHKRNLITKETRKTGLVLGNYGIKATETGYLKMKQMERIKGDLVKKLKDNMDIYFNFYPLFGLTNKGTARMGAGKGEVSEWYVLVKKGSIVVEFIKSRMTAGAMQKVIRYSANKWPIKVRMTQIKQGLYEKKI", "length": 144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21042-1", "protein_name": "Cytochrome c oxidase subunit 1+2", "gene_name": "2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKILEIYDKQIAEKEGNIFIFISKWIISVDHKNIGTMYTNFSILAGIVGTLLSLVIRMELSTGNMLDGDGQQYNVIVTAHGLIMIFFVVMPAMLGGFANWFIPIMVGSPDVAFPRLNNISLWLIIVSFFLLLTSSCVGIGVGTGWTVYPPLSTMEYHPGHAVDVGILSLHIAGASSLLGAINFLTTVFNMKIAGLSWSKVSLFVWSILITAVLLVLSLPVLAGGLTMLITDRNFETTFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGLVSIILSKYSNKGIFGVKGMISAMSAIGFLGFLVWAHHMYTVGLDVDTRAYFTAATMIIAIPTGIKIFSWLATLWGGVIKITTPMLFVIGFLVLFTIGGLTGVVLANGGLDISLHDTYYVVAHFHYVLSMGAIFAIFAGYYYYYSIMNSTRLFGVVRYNEQLGRIHFWTMFIGVNVTFFPMHFLGLAGMPRRIGDYPDAYIGWNLIASYGSLITAFGLLFFVVNIFTPYIRRSVNIKNGAIILMGLDFARDWQIGFQDPATPIMEGIIDLHNYIFFYLIVVAVFIGWVMGRILWRFSYKWSYPTIGDIEIFKNFTAYNQIIHGTVIEIVWTLIPTVILYLIAIPSFTLLYAMDEIINPTVTIKIIGHQWYWSYEYGDNASNLIEFDSYMVYERDLAEGQLRLLEVDNAMVVPVKTHIRLIITSGDVLHSWAIPSFGIKVDAVPGRLNQIGLYVKREGTFYGQCSELCGVDHGFMPIKVQAVKLGEYFSKLNEK", "length": 764 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O21049-1", "protein_name": "Cytochrome c oxidase subunit 3", "gene_name": "cox3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKGFFENLFRQNVRSVINTGKKVGARAAAREIINQEWGYPLANHEVLFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVLNYFGVISSKLGLLIALSSFIGGLVIWTISIIFDSLYDQQHTYEVKRGLVMGMMMFIISEVMFFFSFFWSYFYISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHEKNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAGVKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIYLKKRNKVIKTRLYFTLLCAVVFLACQGYEYFFAPFSMNDGIYGSLFFLLTGFHGFHVLVGSILIGIITIRFIVGNFNLLNVGTNFQIYKNKSTGFACTLFYWHFVDIVWIFLYIVIYWWGSR", "length": 435 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O23373-1", "protein_name": "Formin-like protein 3", "gene_name": "FH3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MGRLRLAFLAISLVVFVCVSEEIFSRGGLNLLRFSVYGEDVAEQTWIHQNPRRKLISYPKKFSVSAPNLAFGPAPSFAPGPGPSFAPGPAPNPRSYDWLAPASSPNEPPAETPDESSPSPSEETPSVVAPSQSVPGPPRPPPQREKKDDILMKLIIAVASTAVLTFVFVALMFLCCFKRNCNNAVGSRDGPRDEGPLLRLSTGSTENSPTVASTSRKMFSVASSKKRSFLSRVSLKRNGHEFSTAESSSAAGLPPLKLPPGRSAPPPPPAAAPPPQPPPPPPPKPQPPPPPKIARPPPAPPKGAAPKRQGNTSSGDASDVDSETGAPKTKLKPFFWDKMANPDQKMVWHEISAGSFQFNEEAMESLFGYNDGNKNKNGQKSTDSSLRESPLQYIQIIDTRKAQNLSILLRALNVTTEEVVDAIKEGNELPVELLQTLLKMAPTSEEELKLRLYSGDLHLLGPAERFLKILVDIPFAFKRIESLLFMISLQEEVSGLKEALGTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFRGDAQAFKLDTLLKLSDVKGTDGKTTLLHFVVLEIIRSEGVRALRLQSRSFSSVKTDDSNADSSPQSVERYRSTGLQVVTGLTTELEDVKRAAIIDADGLAATLANISGSLTNAREFLKTMDEESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDFLIMLEKVCREVKETTKTTNHSGKKESEMTTSDSNQPSPDFRQRLFPAIAERRMDSSDDSDDEEDSSPS", "length": 785 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O35698-1", "protein_name": "RNA-binding motif protein, Y chromosome", "gene_name": "Rbmy", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQARRPSSLESGSKKRPPSFSRTRGASRILKCGRGGRSRARSGPSCEGNLGGDRYTPNFNVSSSGRHFAVKRNPSSKRDDPPSKRSATSAQTRSNTGLRGREPHRREISRNMPRGEPASSRRDEYPLPRDYGQSSNDRKYESTSRGYCDYGNYHSREESASKVFSDHAGYLGGRDRDFSEYLSGNSYRDTYRSYGRFHEAPSARGGNNRYDDYSNSQDGYGGRGEPYISNRSNIYSSDYERSGRQEVLPPPIDREYFDREGRQERGHSPKDGLYSASRESYSSNTKIWGIPWRSWRKQI", "length": 380 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "O60309-1", "protein_name": "Leucine-rich repeat-containing protein 37A3", "gene_name": "LRRC37A3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAQCPALACVMSPLRFWGPWPLLMWQLLWLLVKEAQPLEWVKDPLQLTSNPLGPPEPWSSHSSHFPRESPHAPTLPADPWDFDHLGPSASSEMPAPPQESTENLVPFLDTWDSAGELPLEPEQFLASQQDLKDKLSPQERLPVSPKKLKKDPAQRWSLAEIIGIIHQLSTPQSQKQTLQNEYSSTDTPYPGSLPPELRVKSDEPPGPSEQVGPSQFHLEPETQNPETLEDIQSSSLQQEAPAQLPQLLEEEPSSMQQEAPALPPESSMESLTLPNHEVSVQPPGEDQAYYHLPNITVKPADVEVTITSEPTNETESSQAQQETPIQFPEEVEPSATQQEAPIEPPVPPMEHELSISEQQQPVQPSESSREVESSPTQQETPGQPPEHHEVTVSPPGHHQTHHLASPSVSVKPPDVQLTIAAEPSAEVGTSLVHQEATTRLSGSGNDVEPPAIQHGGPPLLPESSEEAGPLAVQQETSFQSPEPINNENPSPTQQEAAAEHPQTAEEGESSLTHQEAPAQTPEFPNVVVAQPPEHSHLTQATVQPLDLGFTITPESMTEVELSPTMKETPTQPPKKVVPQLRVYQGVTNPTPGQDQAQHPVSPSVTVQLLDLGLTITPEPTTEVGHSTPPKRTIVSPKHPEVTLPHPDQVQTQHSHLTRATVQPLDLGFTITPKSMTEVEPSTALMTTAPPPGHPEVTLPPSDKGQAQHSHLTQATVQPLDLELTITTKPTTEVKPSPTTEETSTQLPDLGLAIIPEPTTETGHSTALEKTTAPRPDRVQTLHRSLTEVTGPPTELEPAQDSLVQSESYTQNKALTAPEEHKASTSTNICELCTCGDEMLSCIDLNPEQRLRQVPVPEPNTHNGTFTILNFQGNYISYIDGNVWKAYSWTEKLILRENNLTELHKDSFEGLLSLQYLDLSCNKIQSIERHTFEPLPFLKFINLSCNVITELSFGTFQAWHGMQFLHKLILNHNPLTTVEDPYLFKLPALKYLDMGTTLVPLTTLKNILMMTVELEKLIVPSHMACCLCQFKNSIEAVCKTVKLHCNSACLTNTTHCPEEASVGNPEGAFMKVLQARKNYTSTELIIEPEEPSDSSGINLSGFGSEQLDTNDESDVTSTLSYILPYFSAVNLDVKSLLLPFIKLPTTGNSLAKIQTVGKNRQRLNRVLMGPRSIQKRHFKEVGRQSIRREQGAQASVENTAEEKRLGSPAPRELKQPHTQQGPEKLAGNAVYTKPSFTQEHKAAVSVLKPFSKGAPSTSSPAKALPQVRDRWKDLTHAISILESAKARVTNMKTSKPIVHSRKKYRFHKTRSRMTHRTPKVKKSPKVRKKSYLSRLMLSNRLPFSAAKSLINSPSQGAFSSLRDLSPQENPFLEVSAPSEHFIENNNTKDTTARNAFEENVFMENTNMPEGTISENTNYNHPPEADSAGTAFNLGPTVKQTETKWEYNNVGTDLSPEPKSFNYPLLSSPGDQFEIQLTQQLQSVIPNNNVRRLIAHVIRTLKMDCSGAHVQVTCAKLVSRTGHLMKLLSGQQEVKASKIEWDTDQWKTENYINESTEAQSEQKEKSLEFTKELPGYGYTKKLILALIVTGILTILIILLCLIEICCHRRSLQEDEEGFSRDSEAPTEEESEALP", "length": 1634 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "O80489-1", "protein_name": "small monomeric GTPase", "gene_name": "SARA1A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MFLFDWFYGILASLGLCKKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKINFKAFDLGGHQIARRVWKDCYAKVDAVVYLVDAYDRDRFVESKRELDALLSDEALANVPCLILGNKIDIPYASSEDELRYYLGLTNFTTGKGIVNLEDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYIK", "length": 193 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O80614-1", "protein_name": "RING-type E3 ubiquitin transferase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSDMRDERFFYHRYLSVTNRTTPTTATNLPTSTSNMRSTSLMTPRVAHTSMSSGGDFPDDRFFHARHQSATDRAASNRSRAIMPISTTNVPSSTSNSPRVLQTSMSRRGTSPMSSSTRRSVQASMSARETVPSSTSTRSMQTSTSTPEIMPTSSRNVITSSEEVANTFTQTSYIQFGSLWETNTTPSTRSWPTVPSSNSPRVLQTSMSRRGTSPMSSSTRRNVQSSMSGRETVSSSTSTSSMQTSMSTPEIMPTSSRNVITRSEEVANTFSTQTPYIQFGRLWETNTTSSTRSRTTVPTSTTNVPSSNSSRVLQTSMSTRGTFPMSSSTRMSVQASMLAPGTVSSSMSTVEIMPTSARNMITMSEEVANSFTQTSYIQFGSLWETFKTVTKLSRVAMVENGECVICLEEWRKETYVTSSTSNMRTSSLMTLTRFIDEQISLRATVSSTRTTARLLTNESPATIRAVAMLPRVAMVEKGECVICFEEWSKSDMETELPCKHKYHLECVEKWLKIHTSCPQCRYKLSCVYKSFLML", "length": 535 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "O81153-1", "protein_name": "Proteasome subunit beta type-3-B", "gene_name": "PBC2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSIFEYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD", "length": 204 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P00757-1", "protein_name": "Kallikrein 1-related peptidase-like b4", "gene_name": "Klk1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANNP", "length": 256 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P01241-1", "protein_name": "Somatotropin", "gene_name": "GH1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MATGSRTSLLLAFGLLCLPWLQEGSAFPTIPLSRLFDNAMLRAHRLHQLAFDTYQEFEEAYIPKEQKYSFLQNPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLEDGSPRTGQIFKQTYSKFDTNSHNDDALLKNYGLLYCFRKDMDKVETFLRIVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P02762-1", "protein_name": "Major urinary protein 6", "gene_name": "Mup6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04071-1", "protein_name": "Kallikrein 1-related peptidase b16", "gene_name": "Klk1b16", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MWFLILFLALSLGGIDAAPPVQSRIVGGFKCEKNSQPWQVAVYYHKEHICGGVLLDRNWVLTAAHCYVDECEVWLGKNQLFQEEPSAQNRLVSKSFPHPGFNMTLLTFEKLPPGADFSNDLMLLRLSKPADITDVVKPIDLPTKEPKLDSTCLVSGWGSITPTKWQKPDDLQCMFTKLLPNENCAKAYLLKVTDVMLCTIEMGEDKGPCVGDSGGPLICDGVLQGTVSIGPDPCGIPGVSAIYTNLVKFNSWIKDTMMKNA", "length": 261 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P04644-1", "protein_name": "Small ribosomal subunit protein eS17", "gene_name": "Rps17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPRGAV", "length": 135 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P05817-1", "protein_name": "Prestalk D11 protein", "gene_name": "ampA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKLILLLILSSCLVLSVKSEVNVDCSLVRCAQPICKPHYRLNMTDSCCGRCEPCTDVACTLQVKYCQDGEVPTGCCPCTLPPTKPDCSLVKCARPVCKPYYRLNMTDSCCGRCEPCTGVACTLQIKYCKDGEVPTGCCPCTPQPTKKPDCSKVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQPTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPFGCCPCRENLTQ", "length": 284 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P06325-1", "protein_name": "T-cell receptor gamma chain V region 5/10-13", "gene_name": "Tcrg-V1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLLLRWPTFCCLWVFGLGQLEQTELSVTRATDESAQISCIVSLPYFSNTAIHWYRQKAKKFEYLIYVSTNYNQRPLGGKNKKIEASKDFQTSTSTLKINYLKKEDEATYYCAVCRSGTSWVKIFAKGTKLVVIPP", "length": 135 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P06349-1", "protein_name": "Histone H1t", "gene_name": "H1-6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSETAPAASSTLVPAPVEKPATKRRGKKPGMATARKPRGFSVSKLIPEALSMSQERAGMSLAALKKALAAAGYDVEKNNSRIKLALKRLVNKGVLVQTKGTGASGSFKLSKKAASGNDKGKGKKSASAKAKKLGLSRASRSPKSSKTKVVKKPKATPTKGSGSRRKTKGAKGLQQRKSPAKARATNSNSGKSKMVMQKTDLRKAAGRK", "length": 208 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P07628-1", "protein_name": "Kallikrein 1-related peptidase b8", "gene_name": "Klk1b8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRFLILFLALSLGGIDAAPPLQSRVVGGFNCEKNSQPWQVAVYDNKEHICGGVLLERNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMSLLTLKEIPPGADFSNDLMLLRLSKPADITDAVKPITLPTKESKLGSTCLASGWGSITPTKWQKPDDLQCVFLKLLPIKNCIENHNVKVTDVMLCAGEMSGGKNICKGDSGGPLICDSVLQGITSTGPIPCGKPGVPAMYTNLIKFNSWIKDTMTKNS", "length": 261 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P07647-1", "protein_name": "Submandibular glandular kallikrein-9", "gene_name": "Klk9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWFLILFLALSLGQIDAAPPGQSRVVGGYNCETNSQPWQVAVIGTTFCGGVLIDPSWVITAAHCYSKNYRVLLGRNNLVKDEPFAQRRLVSQSFQHPDYIPVFMRNHTRQRAYDHNNDLMLLHLSKPADITGGVKVIDLPTEEPKVGSICLASGWGMTNPSEMKLSHDLQCVNIHLLSNEKCIETYKNIETDVTLCAGEMDGGKDTCTGDSGGPLICDGVLQGLTSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKENP", "length": 259 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P08932-1", "protein_name": "T-kininogen 2", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLITILLLCSRLLPSLAQEEGAQEMDCNDETVFQAVDTALKKYNAELESGNQFLLYRVTEGTKKDGAETLYSFKYQIKEGNCSVQSGLTWQDCDFKDAEEAATGECTTTLGKKENKFSVATQICNITPGKGPKKTEEDLCVGCFQPIPMDSSDLKPVLKHAVEHFNNNTKHTHLFALTEVKSAHSQVVAGMNYKIIYSIVQTNCSKEDFPFLREDCVPLPYGDHGECRGHTYVDIHNTIAGFSQSCDLYPGDDLFSLLPKKCFGCPKNIPVDSPELKEALGHSIAQLNAQHNHLFYFKIDTVKKATSQVVAGTKYVIEFIARETNCSKQTNTELTADCETKHLGQSLNCNANVYMRPWENKVVPTVRCQALDMMISRPPGFSPFRLVQVQETKEGTTRLLNSCEYKGRLSKAGAGPAPDHQAEASTVTP", "length": 430 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C0S7-1", "protein_name": "Histone H2A.Z", "gene_name": "H2az1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTV", "length": 128 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C2B7-1", "protein_name": "Large ribosomal subunit protein mL52", "gene_name": "MRPL52", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAALGMLLSTGVRRLHCGSAARAGSQWRLRQGLAANPSGYGPLTELPDWSYADGRPAPPMKGQLRRKAQREKFARRVVLLSQEMDAGLQAWQLRQQEKLQEEKRKQQNALKPKGVLLQNPGPSQ", "length": 124 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P0C644-1", "protein_name": "Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1", "gene_name": "Ppip5k1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MWSLTANEDEDESATAHFFLGAGDEGLGTCGIGMRTGESDSELLEDEEDEVPPEPQIIVGICAMTKKSKSKPMTQILERLCRFDYLTVVILGEDVILNEPVENWPPCHCLISFHSKGFPLDKAVAYSKLRNPFLINDLTMQYYIQDRREVYRILQEEGIDLPRYAVLNRDPACPEECNLIEGEDQVEVNGAVFPKPFVEKPVSAEDHNVYIYYPSSAGGGSQRLFRKIGSRSSVYSPESSVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVERDSEGKEVRYPVMLTAMEKLVARKVCVAFKQTVCGFDLLRANGHSFVCDVNGFSFVKNSMKYYDDCAKILGNTIMRELAPQFQIPWSIPTEAEDIPIVPTTSGTMMELRCVIAIIRHGDRTPKQKMKMEVTHPRFFALFEKHGGYKTGKLKLKRPEQLQEVLDITRLLLAELEKEPGAEIEEKTGKLEQLKSVLEMYGHFSGINRKVQLTYYPHGVKASSEGQDLQREPPAPSLLLVLKWGGELTPDGRVQAEELGRAFRCMYPGGQGDYAGFPGCGLLRLHSTFRHDLKIYASDEGRVQMTAAAFAKGLLALEGELTPILVQMVKSANMNGLLDSDSDSLSSCQHRVKARLHHILQQDAPFGPEDYDQLAPTGSTSLLNSMSVIQNPVKVCDQVFALIENLTHQIRERMQDPSSVDLQLYHSETLELMLQRWSKLERDFRQKSGRYDISKIPDIYDCVKYDVQHNGSLGLQGTAELLRLSKALADVVIPQEYGISREEKVEIAVGFCLPLLRKILLDLQRTHEDESVNKLHPLYSRGVLSPGRHVRTRLYFTSESHVHSLLSVFRYGGLLDETKDAQWQRALAYLSAISELNYMTQIVIMLYEDNTRDPLSEERFHVELHFSPGVKGVEEGSAPAGCGFRPASSENEEMKTDPGSIENLCPAKPSDEPDRALQTSPQPVEGTGLPRRSPLIRNRKAGSMEVLSETSSSRPGGYRLFSSSRPPTEMKQSGLGSQCTGLFSTTVLGGSSSAPNLQDYARTHGKKLPPAGLKHRDELLFVPAVKRFSVSFAKHPTNGFEGCSMVPTIYPLETLHNALSLRQVSEFLTKVCQRHTDAHAQASAALFDSMHNHQASDNPFSPPRTLHSPPLQLRHRSEKPPWYSSGPSSTVSSAGPSSPTTVDGNSHFGFSDQSSVNTQMIEEKQGLGLLQETPGDGTPEFHIELAESTQSPQEPPVEISPPGSQDDTEVNQTCQEVPDTIQPCHDILEEIGQPNQEVPDISQLLLKNHDTATNTCQPCQASQLSKKVYEEICQLCQDNPEESNQLCQEVSVELGRMVHRFPVSIGSTTQETLMEIGRPTQEIPEEPCQEFSEKVGMLTQKASAISELSQDILETDNPSQELSEETDLQAQEVSEEIDQEPEVVDELSNEDIS", "length": 1434 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P0C7H9-1", "protein_name": "Inactive ubiquitin carboxyl-terminal hydrolase 17-like protein 7", "gene_name": "USP17L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLGGDWQFNHFSKLTSSRLDAAFAEIQRTSLSEKSPLSSETRFDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQKIGNTFYVNVSLQCLTYTLPLSNYMLSREDSQTCHLHKCCMFCTMQAHITWALHSPGHVIQPSQVLAAGFHRGEQEDAHEFLMFTVDAMKKACLPGHKQLDHHSKDTTLIHQIFGAYWRSQIKYLHCHGVSDTFDPYLDIALDIQAAQSVKQALEQLVKPKELNGENAYHCGLCLQKAPASKTLTLPTSAKVLILVLKRFSDVTGNKLAKNVQYPKCRDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASGITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRPATQGELKRDHPCLQVPELDEHLVERATQESTLDHWKFPQEQNKTKPEFNVRKVEGTLPPNVLVIHQSKYKCGMKNHHPEQQSSLLNLSSTKPTDQESMNTGTLASLQGSTRRSKGNNKHSKRSLLVCQ", "length": 530 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0CW02-1", "protein_name": "Lymphocyte antigen 6C1", "gene_name": "Ly6c1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL", "length": 131 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DKL4-1", "protein_name": "Spliceosome-associated protein 130 A", "gene_name": "SAP130A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DKL6-1", "protein_name": "Spliceosome-associated protein 130 B", "gene_name": "SAP130B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGAIRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYVAVDPKGRAVMIGACEKQKLVYVLNRDTTARLTISSPLEAHKSHTICYSLCGVDCGFDNPIFAAIELDYSEADQDPTGQAASEAQKHLTFYELDLGLNHVSRKWSNPVDNGANMLVTVPGGADGPSGVLVCAENFVIYMNQGHPDVRAVIPRRTDLPAERGVLVVSAAVHKQKTMFFFLIQTEYGDVFKVTLDHNGDHVSELKVKYFDTIPVASSICVLKLGFLFSASEFGNHGLYQFQAIGEEPDVESSSSNLMETEEGFQPVFFQPRRLKNLVRIDQVESLMPLMDMKVLNIFEEETPQIFSLCGRGPRSSLRILRPGLAITEMAVSQLPGQPSAVWTVKKNVSDEFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEMSGDVACLDIAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGGDDGADHPANLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVRGRSAMLCLSSRPWLGYIHRGHFHLTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCTVNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDDVDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPAEILKKLEDARNKII", "length": 1214 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DML3-1", "protein_name": "Chorionic somatomammotropin hormone 2", "gene_name": "CSH2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAGSRTSLLLAFALLCLPWLQEAGAVQTVPLSRLFDHAMLQAHRAHQLAIDTYQEFEETYIPKDQKYSFLHDSQTSFCFSDSIPTPSNMEETQQKSNLELLRISLLLIESWLEPVRFLRSMFANNLVYDTSDSDDYHLLKDLEEGIQTLMGRLEDGSRRTGQILKQTYSKFDTNSHNHDALLKNYGLLYCFRKDMDKVETFLRMVQCRSVEGSCGF", "length": 217 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DMV2-1", "protein_name": "Cancer/testis antigen family 45 member A9", "gene_name": "CT45A9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DOV1-1", "protein_name": "Interferon-activable protein 211", "gene_name": "Ifi211", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLRGLECINKHYFSLFKSLLARDLNLERDNQEQYTTIQIANMMEEKFPADSGLGKLIEFCEEVPALRKRAEILKKERSEVTGETSLEKNGQEAGPATPTSTTSHMLASERGETSATQEETSTAQAGTSTAQAGTSTAQAGTSTAQKRKSMREEETGVKKSKAAKEPDQPPCCEEPTAMCQSPILHSSSSASSNILSAKNQKSQPQNQNIPRGAVLHSEPLTVMVLTATDPFEYESPEHEVKNMFHATVATVSQYFHVKVFNIDLKEKFTKNNFITISNYFESKGILEINETSSVLEAAPKQMIEVPNCITRNANASPKICDIQKGTSGTVFYGVFTLHKKKVKTQNTSYEIKDGSGSIEVVGSGQWHNINCKEGDKLHLFCFHLKRERGQPKLVCGDHSFVKVTKAGKKKEASTVQ", "length": 425 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P0DTA3-1", "protein_name": "Speedy protein E11", "gene_name": "SPDYE11", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVSGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD3-1", "protein_name": "Speedy protein E14", "gene_name": "SPDYE14", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DUD4-1", "protein_name": "Speedy protein E15", "gene_name": "SPDYE15", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGQILGKIMMSHQPQPQEERSPQRSTSGYPLQEVVDDEVLGPSAPGVDPSPPRRSLGWKRKRECLDESDDEPEKELAPEPEETWVAETLCGLKMKAKRRRVSLVLPEYYEAFNRLLEDPVIKRLLAWDKDLRVSDKYLLAMVIAYFSRAGLPSWQYQRIHFFLALYLANDMEEDDEAPKQNIFYFLYEETRSHIPLLSELWFQLCRYMNPRARKNCSQIALFRKYRFHFFCSMRCRAWVSLEELEEIQAYDPEHWVWARDRAHLS", "length": 265 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW11-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 6", "gene_name": "TAF11L6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW12-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 7", "gene_name": "TAF11L7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW13-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 8", "gene_name": "TAF11L8", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P0DW14-1", "protein_name": "TATA-box-binding protein-associated factor 11-like protein 10", "gene_name": "TAF11L10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "METGRQTGVSAEMLAMPRGLKGSKKDGIPEDLDGNLEAPRDQEGELRSEDVMDLTEGDSEASASAPPAAKRRKTHTKGKKESKPTVDAEEAQRMTTLLSAMSEEQLSRYEVCRRSAFPRARVAGLMRAITGSSVSENAAIAMAGIAKLFVGEVVEEALDVCEMWGETPPLQPKHLREAVRRLKPKGLFPNSNCKRIMF", "length": 198 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P11588-1", "protein_name": "Major urinary protein 1", "gene_name": "Mup1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLENSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAQLCEKHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P11589-1", "protein_name": "Major urinary protein 2", "gene_name": "Mup2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKMLLLLCLGLTLVCVHAEEASSTGRNFNVEKINGEWHTIILASDKREKIEDNGNFRLFLEQIHVLEKSLVLKFHTVRDEECSELSMVADKTEKAGEYSVTYDGFNTFTIPKTDYDNFLMAHLINEKDGETFQLMGLYGREPDLSSDIKERFAKLCEEHGILRENIIDLSNANRCLQARE", "length": 180 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P13255-1", "protein_name": "Glycine N-methyltransferase", "gene_name": "Gnmt", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVDSVYRTRSLGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLASFTELVQEAFGGRCQHSVLGDFKPYRPGQAYVPCYFIHVLKKTG", "length": 293 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P13675-1", "protein_name": "Y-linked testis-specific protein 1", "gene_name": "Ssty1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSLMKKRRRKSSSNTLRNIVSCRISHSWKEGNEPVTQWKAIVLDQLPTNPSLYFVKYDGIDSIYVLELYSDDRILNLKVLPPIVVFPQVRDAHLARALVGRAVQHKFERKDGSEVNWRGVVLAQVPIMKDLFYITYKKDPALYAYQLLDDYKEGNLHMIPDTPPAEERSGDDSDVLIGNWVEYTRKDGSKKFGKVVYQVLANPSVYFIKFHGDIHIYVYTMVPKILEVEKS", "length": 232 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15515-1", "protein_name": "Histatin-1", "gene_name": "HTN1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKFFVFALVLALMISMISADSHEKRHHGYRRKFHEKHHSHREFPFYGDYGSNYLYDN", "length": 57 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P16374-1", "protein_name": "Zinc finger protein 60", "gene_name": "Zfp60", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MANSSSQHMVCGSVTFRDVAVDFSQEEWACLDATQKVLYRNIMLETYSNLVAVVGRCIPKPDLIVLLEPEKEPWMAVKKETGRPSQGLETGFEAENRSPKNHVYNKKLPKQTIQQLSKTSDVQGVSVSNGPGYSVIKEPQNYQEGDANRNITNKKEMSTYTSKTLAHNKEKPYKCKDCGKCFGCKSNLHQHESIHTGEKPYECKDCGKTFRLPQMLSRHQKSHSDERPFECNICGKSFHLPTLLQYHKNIHTGLKPFECEECGKSFKSFNRISTLFQHRTIHAGMKPYKCNVCGKAFNRRSNLLQHQKIHSEDRPFHCKVCGKAFTVLAQLTRHENIHTEDKSFECKQCGKIFSNGSYLLRHYDTHTNEKPFECNICGKAFRLHLYLSEHQKTHTDEKPFKCKLCESAFRRKYQLSEHQRIHTDGKPYQCKDCWEFFRRRSNFIEHQSIHTGKKPFECKDCGKVFRLNIHLIRHQRFHSDEKPFECKECGKAFHFSSQLNNHKTSHTGQTPFECKECGKSFKRVSSLVEHRIIHSGVKPYKCNACGRAFNRRSNLMQHEKIHSDERPFECKDCGKAFTVLAQLTRHQTIHNGKKSYECEQCGSAFRLPYQLTQHQRIHYDVKPFQCKECGRAFVRSTGLRIHERIHTGEKPFQCKECGEAFQYHYQFLGHFRIHTGKNPYECSECGKYFTYGRDLKVHQSIHNLEKP", "length": 707 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P20816-1", "protein_name": "Cytochrome P450 4A2", "gene_name": "Cyp4a2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGFSVFSPTRSLDGVSGFFQGAFLLSLFLVLFKAVQFYLRRQWLLKALEKFPSTPSHWLWGHNLKDREFQQVLTWVEKFPGACLQWLSGSTARVLLYDPDYVKVVLGRSDPKPYQSLAPWIGYGLLLLNGKKWFQHRRMLTPAFHYDILKPYVKIMADSVSIMLDKWEKLDDQDHPLEIFHYVSLMTLDTVMKCAFSHQGSVQLDVNSRSYTKAVEDLNNLIFFRVRSAFYGNSIIYNMSSDGRLSRRACQIAHEHTDGVIKTRKAQLQNEEELQKARKKRHLDFLDILLFAKMEDGKSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQMPYTTMCIKEALRLYSPVPSVSRELSSPVTFPDGRSIPKGIRVTILIYGLHHNPSYWPNPKVFDPSRFSPDSPRHSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVPMPRLVLKSKNGIHLRLKKLR", "length": 504 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P21571-1", "protein_name": "ATP synthase peripheral stalk subunit F6, mitochondrial", "gene_name": "Atp5pf", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVQRIFRLSSVLRSAVSVHLRRNIGVTAVAFNKELDPVQKLFLDKIREYKAKRLASGGPVDTGPEYQQEVDRELFKLKQMYGKGEMDKFPTFNFEDPKFEVLDKPQS", "length": 108 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P22237-1", "protein_name": "NADH-ubiquinone oxidoreductase subunit 9", "gene_name": "nad9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKDYKNELKVKINLGEHLRLSIPGLVKKIMYKTHYLEIQVEKEKMLTVLKYLKEASKYQCNMLLDIVCVDCLNIEEIKIGRFKLIYVLNSIYNNTRVHLSTYVENNGIIETTSGLFESSVWLEREIWDMFGIYFEKHPDLRRILTDYGFVGYPLKKDFPITGYLEVYYDVNDKKIIYKPIELMQEYRNYNFGAVWGDYERKVYLENIIK", "length": 209 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "P22283-1", "protein_name": "Cystatin-related protein 2", "gene_name": "Crp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYKTLCGTQLLLAIFVLFLNFSHATAKGTRGPMEIFKKNFMEKNKLNDVYDIFKFLYNKFSHDTYLSNIKNQSFTMNTWGFGEIEVVKTKCRKIDSDFYKCSFQWEFCNIKRTPGVTIYYITLPGSVRCRKLLSKLVNCPFEEQTEQLKREICYFQLYPDYIEQNIRSVRFNCYTK", "length": 176 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P23266-1", "protein_name": "Olfactory receptor 1f45", "gene_name": "Or1f45", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSSTNQSSVTEFLLLGLSRQPQQQQLLFLLFLIMYLATVLGNLLIILAIGTDSRLHTPMYFFLSNLSFVDVCFSSTTVPKVLANHILGSQAISFSGCLTQLYFLAVFGNMDNFLLAVMSYDRFVAICHPLHYTTKMTRQLCVLLVVGSWVVANMNCLLHILLMARLSFCADNMIPHFFCDGTPLLKLSCSDTHLNELMILTEGAVVMVTPFVCILISYIHITCAVLRVSSPRGGWKSFSTCGSHLAVVCLFYGTVIAVYFNPSSSHLAGRDMAAAVMYAVVTPMLNPFIYSLRNSDMKAALRKVLAMRFPSKQ", "length": 313 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24049-1", "protein_name": "Large ribosomal subunit protein uL22", "gene_name": "Rpl17", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE", "length": 184 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P24868-1", "protein_name": "G2/mitotic-specific cyclin-1", "gene_name": "CLB1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSRSLLVENSRTINSNEEKGVNESQYILQKRNVPRTILGNVTNNANILQEISMNRKIGMKNFSKLNNFFPLKDDVSRADDFTSSFNDSRQGVKQEVLNNKENIPEYGYSEQEKQQCSNDDSFHTNSTALSCNRLIYSENKSISTQMEWQKKIMREDSKKKRPISTLVEQDDQKKFKLHELTTEEEVLEEYEWDDLDEEDCDDPLMVSEEVNDIFDYLHHLEIITLPNKANLYKHKNIKQNRDILVNWIIKIHNKFGLLPETLYLAINIMDRFLCEEVVQLNRLQLVGTSCLFIASKYEEIYSPSIKHFAYETDGACSVEDIKEGERFILEKLDFQISFANPMNFLRRISKADDYDIQSRTLAKFLMEISIVDFKFIGILPSLCASAAMFLSRKMLGKGTWDGNLIHYSGGYTKAKLYPVCQLLMDYLVGSTIHDEFLKKYQSRRFLKASIISIEWALKVRKNGYDIMTLHE", "length": 471 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P25389-1", "protein_name": "Probable serine/threonine-protein kinase KCC4", "gene_name": "KCC4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTVANTETHSAAKPSSTIGPWKLGETLGFGSTGKVQLAQHERTGHRTAVKVISKSIFNNNGNHSNDDSVLPYNIEREIVIMKLLSHPNVLSLYDVWETNNNLYLILEYAEKGELFNLLVDHGPLPEREAINCFRQIIIGISYCHALGIVHRDLKPENLLLDSFYNIKIADFGMAALQTDADLLETSCGSPHYAAPEIVSGLPYEGFASDVWSCGVILFALLTGRLPFDEENGNVRDLLLKVQKGQFEMPNDTEISRDAQDLIGKILVVDPRQRIKIRDILSHPLLKKYQTIKDSKSIKDLPRENTYLYPLADSNNHTSASIDDSILQNLVVLWHGRHADDIVSKLKENGTNKEKILYALLYRFKLDSVRGSNKKNRNKIKKTKKNKRSSTLSSSSSLLLNNRSIQSTPRRRTSKRHSREFSSSRKRSSFLLSSNPTDSSPIPLRSSKRITHINVASANTQATPSGVPNPHKRNSKKRSSKRLSYMPNTKRSSLTSKSLSNFTNLIDDDDWEYIEKDAKRTSSNFATLIDEIFEPEKFELAKREKAELQRKVQEAKRQSVNAQKINEDEFGSEVSDGMKELKKINDKVSSPLINYEFSQQELLQDIDTLLTNRYQLSSYTRPISRLDPGLTPVTETLPNNLKEKTALLQDTEKKIIETIRRSKFLGSLLNVRGGLSPGKSELAPIEESPIVSTTPLIYNDRMEPRRISDVEVPHFTRKSKHFTTANNRRSVLSLYAKDSIKDLNEFLIKEDPDLPPQGSTDNESRSEDPEIAESITDSRNIQYDEDDSKDGDNVNNDNILSDFPQGVGISQEYDMKDKNPNQSPISKSAEPTLVVKLPSLSSFQGKNASGLGLYQREPSKVTLPSLTSNNSSVGENIEDGAEKGTESEKIAASLSDDDLKEDNDKKDNDTVNAPTTVKKPPNSVLLKKFSKGKILELEIHAKIPEKRLYEGLHKLLEGWKQYGLKNLVFNITNMIITGKLVNDSILFLRSTLFEIMVLPNGDGRSLIKFNKKTGSTKTLTKLATEIQIILQKEGVLDK", "length": 1037 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P28312-1", "protein_name": "Alpha-defensin 5", "gene_name": "Defa5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTFVLLSALVLLAFQVQADPIHKTDEETNTEEQPGEEDQAVSISFGGQEGSALHEELSKKLICYCRIRGCKRRERVFGTCRNLFLTFVFCCS", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P28742-1", "protein_name": "Kinesin-like protein KIP1", "gene_name": "KIP1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARSSLPNRRTAQFEANKRRTIAHAPSPSLSNGMHTLTPPTCNNGAATSDSNIHVYVRCRSRNKREIEEKSSVVISTLGPQGKEIILSNGSHQSYSSSKKTYQFDQVFGAESDQETVFNATAKNYIKEMLHGYNCTIFAYGQTGTGKTYTMSGDINILGDVQSTDNLLLGEHAGIIPRVLVDLFKELSSLNKEYSVKISFLELYNENLKDLLSDSEDDDPAVNDPKRQIRIFDNNNNNSSIMVKGMQEIFINSAHEGLNLLMQGSLKRKVAATKCNDLSSRSHTVFTITTNIVEQDSKDHGQNKNFVKIGKLNLVDLAGSENINRSGAENKRAQEAGLINKSLLTLGRVINALVDHSNHIPYRESKLTRLLQDSLGGMTKTCIIATISPAKISMEETASTLEYATRAKSIKNTPQVNQSLSKDTCLKDYIQEIEKLRNDLKNSRNKQGIFITQDQLDLYESNSILIDEQNLKIHNLREQIKKFKENYLNQLDINNLLQSEKEKLIAIIQNFNVDFSNFYSEIQKIHHTNLELMNEVIQQRDFSLENSQKQYNTNQNMQLKISQQVLQTLNTLQGSLNNYNSKCSEVIKGVTEELTRNVNTHKAKHDSTLKSLLNITTNLLMNQMNELVRSISTSLEIFQSDSTSHYRKDLNEIYQSHQQFLKNLQNDIKSCLDSIGSSILTSINEISQNCTTNLNSMNVLIENQQSGSSKLIKEQDLEIKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDNLKDKQSKLDQDIWQKTASIFNETDIVVNKIHSDSIASLAHNAENTLKTVSQNNESFTNDLISLSRGMNMDISSKLRSLPINEFLNKISQTICETCGDDNTIASNPVLTSIKKFQNIICSDIALTNEKIMSLIDEIQSQIETISNENNINLIAINENFNSLCNFILTDYDENIMQISKTQDEVLSEHCEKLQSLKILGMDIFTAHSIEKPLHEHTRPEASVIKALPLLDYPKQFQIYRDAENKSKDDTSNSRTCIPNLSTNENFPLSQFSPKTPVPVPDQPLPKVLIPKSINSAKSNRSKTLPNTEGTGRESQNNLKRRFTTEPILKGEETENNDILQNKKLHQ", "length": 1111 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P29314-1", "protein_name": "Small ribosomal subunit protein uS4", "gene_name": "Rps9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED", "length": 194 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P33579-1", "protein_name": "Prolactin-8A5", "gene_name": "Prl8a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELALSQPSFFGTLLMLVVSNLLLWEKAASIPACMVEDGGCWDPLREAFNSATQRAETLRNLSDQLYVEFFQNQFSSRQFADLSSQLIRKDETVLKAGTYCHSNRAKPKSRGVNIDIEEYLKMSINFCGFMDQPLFHLVIELSAMEGVPETILSKAKDLEENNRQLLDDLRWILTKVFPTAEIKEEFPSWDYLSFLKSSNKNHKFLAIFNLSSCLDYDTQVHYTLSQILNCLITGKDC", "length": 238 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P36006-1", "protein_name": "Myosin-3", "gene_name": "MYO3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAVIKKGARRKDVKEPKKRSAKIKKATFDANKKKEVGISDLTLLSKISDESINENLKKRFKNGIIYTYIGHVLISVNPFRDLGIYTNAVLESYKGKNRLEVPPHVFAIAESMYYNLKSYNENQCVIISGESGAGKTEAAKRIMQYIAAASNSHSESIGKIKDMVLATNPLLESFGCAKTLRNNNSSRHGKYLEIKFNSQFEPCAGNITNYLLEKQRVVGQIKNERNFHIFYQFTKGASDTYKQMFGVQMPEQYIYTAAAGCTTADTIDDVKDYEGTLEAMRTIGLVQEEQDQIFRMLAAILWIGNISFIENEEGNAQVGDTSVTDFVAYLLQVDASLLVKCLVERIMQTSHGMKRGSVYHVPLNPVQATAVRDALAKAIYNNLFDWIVDRVNVSLQAFPGADKSIGILDIYGFEIFEHNSFEQICINYVNEKLQQIFIQLTLKAEQETYEREKIKWTPIKYFDNKVVCDLIEAKNPPGILAAMNDSIATAHADSNAADQAFAQRLNLFNSNPYFELRANKFVIKHYAGDVTYDINGITDKNKDQLQKDLIELIGTTTNTFLSTIFPDDVDKDSKRRPPTAGDKIIKSANELVETLSKAEPSYIRTIKPNQTKSPNDYDDHQVLHQVKYLGLQENVRIRRAGFAYRQTFEKFVERFYLLSPDCSYAGDYTWDGDTLEAVKLILRDAMIPEKEFQLGVTSVFIKTPESLFALEDMRDKYWYNMAARIQRAWRRFLQRRIDAAIKIQRTIREKKGGNKYVKLRDYGTKLLAGKKERRSMSLLGYRAFMGDYLSCNESKTKGSYIRRQVGIKDKVVFSIKGECLHSKFGRSAQRLKKVFILTKKTFYIIGQTREQNAMKYTQDYKIDVGKIKQVSLTNLQDDWMGVILVNSTQSDPLINTPFKTELMTRLKKLNEKIMIKVGPTIEYHKQPNKLHTVRSKISDSAPKYGDIYKSSTIYVRRGHPANSKSNKKPKNPGGLSGKPIKSKKSKHKSTHKHTHSHRSHRDAAKKQPLPSQKPVNPLSLAATAAQAAYNPKPDKTVPIKSSAIPAAKVSSKHSSKPSSKEKVAVKKASSSHKSSSAKQNQVSMPPSKGVEKNKEPLKETTATATANIPIPPPPPPMGQPKDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVPVAATGAVNDVTNQKSSQIDNTISSAQEGVQFGSATVGPTSDNQSNPVGTFSDGLASALAARANKMRAESADDDDNDDGDDDDDW", "length": 1272 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P36046-1", "protein_name": "Mitochondrial intermembrane space import and assembly protein 40", "gene_name": "MIA40", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MLRNLVVRNACRNRPSIQVARGLCRHQTRRLMASSPQFGRNSNQEKTAGFIMGILSMAGALYFIAPNRKPLFASRKVESDKTAEEELSSGGEQSPENEDDNNSKSDENGDDNDSKNDETEAGPQLGGDKIGASKVAEDGELVVLAEEDNKSSEDKDTDESKVSTKDDEQSNEDNATANNQKDENISSENSEENTSDKTLDNNAGSSEKKDPEHSDDEKSQQGQSDDKTTTEDNNGEEESSKKTVSDSENSAKQSESSDEEKEELRKQEEKQMGPTEEEVQHEGAYNPDTGEINWDCPCLGGMAHGPCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKYPEHYAEQLKETSDDEEPQDKVKVNTIESAPNVSSAKENAAKKAEQSDVKKEPLNEESKP", "length": 403 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P37106-1", "protein_name": "Signal recognition particle subunit SRP54 1", "gene_name": "SRP-54A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDLAAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGYKAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRHKQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQGNFTLRSMYDQFQCSLRIPLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDSPNPKIFNESRIMRIARGSGRLVREVMEMLEEYKRIAKTMKGIKIPKNGDMSKVIPPQMLKQMGGMSGLQSLMKQMGSAKDMMGMFGGGGK", "length": 479 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P38150-1", "protein_name": "Inactive deaminase YBR284W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MVQNNESVFFVECDSYKESPSTSPIRLDDLDGNDAVSDQGLAFDGDVGITSQARVRNPRAQIFEDSNTDVVLHLDDLDMVPLNTKFDMQMEMGSPMAMPAETPPPVEPLKTKDLAYSSLAHLPSYFFEQTHFRIDRKCLLEMSKLRRNYLTISKQDALSCPQLHSRVAGGYLKPVKEKLFGIRHFLDLEESNTVNLLQDGNYMTELFNSQINIPTFKEFREDFEWCLKIIRDRSLSRFSEKRLQYLVNKFPVFQHLHSKEEMRQSKKVPHKDFYNCRKIDLNLLLSGCFSQWQLTEFIWTKLRKEPDRVIHQAFNGSHITLSQLFKVNFEETGQFFNGLKIIDDSFLEWYKVIYLAKYHLVNDEMEIHTGSHGKQLRYYLIAKTFLEFDNYINGEYLAELLKTFLIKPQEESKYQLCQLSVDFQFYLHYDNSDVDNWWMVFANWLNHYNIFSNNIRWNIRISRIYPELYHTGKVKNFQEYLNLIFKPLFNAENYLHKSLGPILLKFLSQVSSIDLCIQDTDNYIWKNFTAVSCLPKDWTSGGDNPTISQYMYYVYVNLTKLNHIRQALHQNTFTLRSSCSPTSMNRTSQFSNTLNFTEHTEAILNNFLLACGGFLNAENLWNAPPSLVYLFYLSQIPMVVAPLNSIVDSKPTMLQEQAPTGLVLEPSKPYKKNPFMKFFEMGFKISLSSESILYNNSYTKEPIIEEYSVAASIYRLHSADLCELLRNSVITSGFSSTLKNKWLGVSLASHDYFVENTGFVDKWYDCKPNTSLEHNVPIIRRQYRSSTLAGEWRLIIA", "length": 797 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P40002-1", "protein_name": "Transcriptional regulator MIT1", "gene_name": "MIT1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDIEPTFKGYIEDEDDALLILQATLDGKLKHIPRRPYEIERPYLIVSGSIFVFIEEISGIKRWTDGVSWSPSRISGKFLIYKELDKENAGSNANATSSGSTDSAVITDGTSGARNNPSSSKIKLPPLKNHQFDLPPTMGHSSFESEQDTSISPSNRSNLPLKYTGLVKKTISVKLKRPPFNSIENLHIVSYYSVKDIKQNCLVTPKASPFLKDVRPSQELIVAMGNTTLGNVKNNSTTTGNGPNNINNKSNSSTPLNTVISTNNNSANINAAGSNQFTSANKNYYYKNDESSGYPITQFAPALPSTTLMYTANPPYITQSPDNTNATGMNTHVNNNNNNSNNSSNSNNSNNNNNNNNNNNNNNNNNINNINNVNTNAGNGNNPNRFHNASFAYNTTGDFINPQQQGQISYPFYYTTIPINNPNYYTTQPPNPVTNASTNENQGYSTSSTQHPYYGHPTESQSASAAAGATGTPGTAENVLPVSSMQPLLHQANNNSASSATSTAPYPVYSMNVNVPYYNSSASAYKRAQENTTSNTNAEPSGATSTNSGTMLSNPAYANSQYTPSQVYYQGFPQYAMASAQNPSMYQHQHQHPLPTVYPIATPQQNIMSSGHTLSTIGSDPQHHHYQQEPNDHKNFAMGHANNNILNITNNDTMNNLNTNTSTTTQ", "length": 666 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P42222-1", "protein_name": "Enolase-related protein 3", "gene_name": "ERR3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSITKVHARTVYDSRGNPTVEVEITTENGLFRAIVPSGASTGIHEAVELRDGNKSEWMGKGVTKAVSNVNSIIGPALIKSDLCVTNQKGIDELMISLDGTSNKSRLGANAILGVSLCVARAAAAQKGITLYKYIAELADARQDPFVIPVPFFNVLNGGAHAGGSLAMQEFKIAPVGAQSFAEAMRMGSEVYHHLKILAKEQYGPSAGNVGDEGGVAPDIDTAEDALDMIVKAINICGYEGRVKVGIDSAPSVFYKDGKYDLNFKEPNSDPSHWLSPAQLAEYYHSLLKKYPIISLEDPYAEDDWSSWSAFLKTVNVQIIADDLTCTNKTRIARAIEEKCANTLLLKLNQIGTLTESIEAANQAFDAGWGVMISHRSGETEDPFIADLVVGLRCGQIKSGALSRSERLAKYNELLRIEEELGDDCIYAGHRFHDGNKL", "length": 437 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P43356-1", "protein_name": "Melanoma-associated antigen 2", "gene_name": "MAGEA2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQQTASSSSTLVEVTLGEVPAADSPSPPHSPQGASSFSTTINYTLWRQSDEGSSNQEEEGPRMFPDLESEFQAAISRKMVELVHFLLLKYRAREPVTKAEMLESVLRNCQDFFPVIFSKASEYLQLVFGIEVVEVVPISHLYILVTCLGLSYDGLLGDNQVMPKTGLLIIVLAIIAIEGDCAPEEKIWEELSMLEVFEGREDSVFAHPRKLLMQDLVQENYLEYRQVPGSDPACYEFLWGPRALIETSYVKVLHHTLKIGGEPHISYPPLHERALREGEE", "length": 314 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43357-1", "protein_name": "Melanoma-associated antigen 3", "gene_name": "MAGEA3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLEQRSQHCKPEEGLEARGEALGLVGAQAPATEEQEAASSSSTLVEVTLGEVPAAESPDPPQSPQGASSLPTTMNYPLWSQSYEDSSNQEEEGPSTFPDLESEFQAALSRKVAELVHFLLLKYRAREPVTKAEMLGSVVGNWQYFFPVIFSKASSSLQLVFGIELMEVDPIGHLYIFATCLGLSYDGLLGDNQIMPKAGLLIIVLAIIAREGDCAPEEKIWEELSVLEVFEGREDSILGDPKKLLTQHFVQENYLEYRQVPGSDPACYEFLWGPRALVETSYVKVLHHMVKISGGPHISYPPLHEWVLREGEE", "length": 314 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P43537-1", "protein_name": "Uncharacterized membrane protein YFL067W", "gene_name": "", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MESIILSIAIFIGVLLGTSVGAGSGSSISPDVDAGSGSRTSPDVDAGSGSRISAGVGTFSGSSTSPDVDAGSGSSTSPDVGAGSGSSISAGVGSRIGTGIGSRIGTGIGTGIGSRISTSIGSRISPDVGTSSGNRISTGVSTGISTTMNARVAVLITAAILSAPVTAIALLEARR", "length": 175 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P46162-1", "protein_name": "Beta-defensin 4", "gene_name": "DEFB4", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLAVLFLVLSAGSGFTQRVRNPQSCRWNMGVCIPFLCRVGMRQIGTCFGPRVPCCRR", "length": 63 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P46169-1", "protein_name": "Beta-defensin 11", "gene_name": "DEFB11", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRLHHLLLALLFLVLSAGSGISGPLSCRRNGGVCIPIRCPGPMRQIGTCFGRPVKCCRSW", "length": 60 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P47102-1", "protein_name": "ARF guanine-nucleotide exchange factor 1", "gene_name": "GEA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MHDVPMETVLAVNPATMIVKECINLCSAMNKQSRDKSQTSVAALLGGGSDIFLSQSDSFVDSFHNLPTSSYHDPLISGLVQLRLKINDLKGLDSLNALELLKPFLEIVSASSVSGYTTSLALDSLQKVFTLKIINKTFNDIQIAVRETVVALTHCRFEASKQISDDSVLLKVVTLLRDIITSSFGDYLSDTIIYDVLQTTLSLACNTQRSEVLRKTAEVTIAGITVKLFTKLKLLDPPTKTEKYINDESYTDNNLKDDIIGTTTSDNDLSSTDDDSAVADDNKNEKPVQQVIREQENDEETAEKAENVEPNYGITVIKDYLGLLLSLVMPENRMKHTTSAMKLSLQLINAAIEISGDKFPLYPRLFSLISDPIFKSVLFIIQSSTQYSLLQATLQLFTSLVVILGDYLPMQIELTLRRIFEILEDTTISGDVSKQKPPAIRELIIEQLSILWIHSPAFFLQLFVNFDCNLDRSDLSIDFIKELTKFSLPAAAVNTSNNIPPICLEGVLSLIENIYNDLQRFDRAEFVKNQKEIDILKQRDRKTEFILCVETFNEKAKKGIQMLIEKGFIDSDSNRDIASFLFLNNGRLNKKTIGLLLCDPKKTSLLKEFIDLFDFKGLRVDEAIRILLTKFRLPGESQQIERIVEAFSSKYSADQSNDKVELEDKKAGKNGSESMTEDDIIHVQPDADSVFVLSYSIIMLNTDSHNPQVKDHMTFDDYSNNLRGCYNGKDFPRWYLHKIYTSIKVKEIVMPEEHHGNERWFEDAWNNLISSTSVMTEMQRDFTNPISKLAQIDILQYEKAIFSNVRDIILKTLFKIFTVASSDQISLRILDAISKCTFINYYFSFDQSYNDTVLHLGEMTTLAQSSAKAVELDVDSIPLVEIFVEDTGSKISVSNQSIRLGQNFKAQLCTVLYFQIIKEISDPSIVSTRLWNQIVQLILKLFENLLMEPNLPFFTNFHSLLKLPELPLPDPDISIRKAKMSRSLLSTFASYLKGDEEPSEEDIDFSIKAFECVKASHPLSSVFENNQLVSPKMIETLLSSLVIEKTSENSPYFEQELLFLLEISIILISEASYGQEFGALIADHMINISNLDGLSKEAIARLASYKMFLVSRFDNPRDILSDLIEHDFLVKNEIFNTKYYESEWGKQVINDLFTHLNDVKYNERALKNVKFWNFLRILISAKDRQFAVYTFLEKYIQNGDIFVDDGNFMNILSLLDEMSCAGAVGTKWEQNYENSVEDGCEAPESNPYRSIIDLSSRSINITADLLSTVGRSNSALNKNEIIAAIQGLAHQCLNPCDELGMQALQALENILLSRASQLRTEKVAVDNLLETGLLPIFELDEIQDVKMKRITSILSVLSKIFLGQLVEGVTSNETFLRVLNVFNKYVDDPTVERQLQELIISKREIEKE", "length": 1408 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P53563-1", "protein_name": "Bcl-2-like protein 1", "gene_name": "Bcl2l1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEETEPERETPSAINGNPSWHLADSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIASWMATYLNDHLEPWIQENGGWDTFVDLYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK", "length": 233 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P56840-1", "protein_name": "Protein TCL1B1", "gene_name": "Tcl1b1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAAFDPLGPLPVYLVSVRLGIYEDEHHRVWIVANVETSHSSHGNRRRTHVTVHLWKLIPQQVIPFNPLNYDFLPTTWKLESRNIYWATDGTHWRLLDHSQLGDTEQLILMLVLG", "length": 116 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56841-1", "protein_name": "Protein TCL1B2", "gene_name": "Tcl1b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAAGFYPPRLLPQVLISTGPGFYEDEHHRLWMVAKLETCSHSPYCNKIETCVTVHLWQMTRYPQEPAPYNPMNYNFLPMTWRLASMNTYRGTDAMHWRLLNHSQVGDTVQLILMLE", "length": 117 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56842-1", "protein_name": "Protein TCL1B3", "gene_name": "Tcl1b3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVHFPWMPFPPRFLVCTRDDIYEDENGRQWVVAKVETSRSPYGSRIETCITVHLQHMTTIPQEPTPQQPINNNSLPTMWRLESMNTYTGTDGTYWRLLDHSQMGDTLQLILDIVICEVD", "length": 122 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P56844-1", "protein_name": "Protein TCL1B4", "gene_name": "Tcl1b4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADSVRFPCMPFPPCFLVCTRDDIYEDEHGRQWVAAKVETSSHSPYCSKIETCVTVHLWQMTTLFQEPSPDSLKTFNFLPRTWRLESRNTYRGADAMHWRLVNHSQFYGTEELVLMLDSR", "length": 120 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P59528-1", "protein_name": "Taste receptor type 2 member 123", "gene_name": "Tas2r123", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MFSQKINYSHLFTFSITLYVEIVTGILGHGFIALVNIMDWVKRRRISSVDQILTALALTRFIYVLSMLICILLFMLCPHLPRRSEMLSAMGIFWVVNSHFSIWLTTCLGVFYFLKIANFSNSFFLYLKWRVKKVILIIILASLIFLTLHILSLGIYDQFSIAAYVGNMSYSLTDLTQFSSTFLFSNSSNVFLITNSSHVFLPINSLFMLIPFTVSLVAFLMLIFSLWKHHKKMQVNAKQPRDVSTMAHIKALQTVFSFLLLYAIYLLFLIIGILNLGLMEKIVILIFDHISGAVFPISHSFVLILGNSKLRQASLSVLPCLRCQSKDMDTMGL", "length": 333 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P61314-1", "protein_name": "Large ribosomal subunit protein eL15", "gene_name": "Rpl15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR", "length": 204 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62246-1", "protein_name": "Small ribosomal subunit protein uS8", "gene_name": "Rps15a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF", "length": 130 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62425-1", "protein_name": "Large ribosomal subunit protein eL8", "gene_name": "Rpl7a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKLG", "length": 266 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62802-1", "protein_name": "Histone H4", "gene_name": "", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG", "length": 103 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P62963-1", "protein_name": "Profilin-1", "gene_name": "Pfn1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAGWNAYIDSLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVSITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFNVTVTMTAKTLVLLMGKEGVHGGLINKKCYEMASHLRRSQY", "length": 140 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P62982-1", "protein_name": "Ubiquitin-ribosomal protein eS31 fusion protein", "gene_name": "Rps27a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNKPEDK", "length": 156 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P70709-1", "protein_name": "Eosinophil cationic protein", "gene_name": "Rnase3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGLKLLESRLCLLLSLGLVLMLASCQPPTPSQWFEIQHIYNRAYPRCNDAMRHRNRFTGHCKDINTFLHTSFASVVGVCGNRNIPCGNRTYRNCHNSRYRVSITFCNLTTPARIYTQCRYQTTRSRKFYTVGCDPRTPRDSPMYPVVPVHLDRIF", "length": 155 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81278-1", "protein_name": "Prolactin-releasing peptide", "gene_name": "Prlh", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALKTWLLCLLLLSLVLPGASSRAHQHSMETRTPDINPAWYTGRGIRPVGRFGRRRATPRDVTGLGQLSCLPLDGRTKFSQRG", "length": 83 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83883-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "Rpl36a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P83884-1", "protein_name": "Large ribosomal subunit protein eL42", "gene_name": "RPL36A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF", "length": 106 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "P97876-1", "protein_name": "Basic leucine zipper transcriptional factor ATF-like 3", "gene_name": "Batf3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSQGPPAGGVLQSSVAAPGNQPQSPKDDDRKVRRREKNRVAAQRSRKKQTQKSDKLHEEHESLEQENSVLRREIAKLKEELRHLTEALKEHEKMCPLLLCPMNFVQLRPDPVASWSAHDAPDHPSFIWLGTLV", "length": 133 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q00729-1", "protein_name": "Histone H2B type 1-A", "gene_name": "H2bc1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPEVSAKGTTISKKGFKKAVTKTQKKEGRKRKRCRKESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "length": 127 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q01534-1", "protein_name": "Testis-specific Y-encoded protein 1", "gene_name": "TSPY1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS", "length": 308 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q03764-1", "protein_name": "Ethanolamine kinase", "gene_name": "EKI1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MYTNYSLTSSDAMPRTYLVGTASPEMSKKKRQSANCDKPTRRVIHIIDTNEHSEVDLKNELPITCTNEDGEMTSSSWTSQTANDFLKLAYVNAKLDPSLPSQYFKQDIINVLQSLEIPGWSVPGSKESSLNKNLLTLTQIKGALTNVIYKIHYPNLPPLLMRIFGDSIDSVIDREYELKVIARLSFYDLGPKLEGFFENGRFEKYIEGSRTSTQADFIDRDTSIKIAKKLKELHCTVPLTHKEITDQPSCWTTFDQWIKLIDSHKEWVSNNVNISENLRCSSWNFFLKSFKNYKRWLYNDSAFTSKLLREDDKDSMINSGLKMVFCHNDLQHGNLLFKSKGKDDISVGDLTIIDFEYAGPNPVVFDLSNHLNEWMQDYNDVQSFKSHIDKYPKEEDILVFAQSYINHMNENHVKIASQEVRILYNLIIEWRPCTQLFWCLWALLQSGRLPQRPLIEGEKLMSEKAGLGDETHLMEHKNKENGKYDCSEDDSFNYLGFCKEKMSVFWGDLITLGVIDKDCPDIGKTDYLDTKLIF", "length": 534 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q04902-1", "protein_name": "Probable glutathione-independent glyoxalase SNO4", "gene_name": "SNO4", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MTPKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKIFFASAGHGALFDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRKLTTVERVANKNRAKYLAPIHPWDDYSITDGKLVTGVNANSSYSTTIRAINALYS", "length": 237 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q0D2J5-1", "protein_name": "Zinc finger protein 763", "gene_name": "ZNF763", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDPVACEDVAVNFTQEEWALLDISQRKLYREVMLETFRNLTSIGKKWKDQNIEYEYQNPRRNFRSLIEGNVNEIKEDSHCGETFTQVPDDRLNFQEKKASPEAKSCDNFVCGEVGIGNSSFNMNIRGDIGHKAYEYQDYAPKPYKCQQPKKAFRYHPSFRTQERNHTGEKPYACKECGKTFISHSGIRRRMVMHSGDGPYKCKFCGKAVHCLRLYLIHERTHTGEKPYECKQCVKSFSYSATHRIHERTHTGEKPYECQQCGKAFHSSSSFQAHKRTHTGGKPYECKQCGKSFSWCHSFQIHERTHTGEKPCECSKCNKAFRSYRSYLRHKRSHTGEKPYQCKECRKAFTYPSSLRRHERTHSAKKPYECKQCGKALSYKFSNTPKNALWRKTL", "length": 394 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q0WX57-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 24", "gene_name": "USP17L30", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDDSLYLRGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSCETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYVNASLQCLTYTPPLANYMLSREHSQTCHRHKGCMLCTMQAHITRALHNPGHVIQPSQALAAGFHRGKQEDAHEFLMFTVDAMKKACLPGHKQVDHHSKDTTLIHQIFGGYWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVQQALEQLVKPEELNGENAYHCGVCLQRAPASKTLTLHTSAKVLILVLKRFSDVTGNKIAKNVQYPECLDMQPYMSQPNTGPLVYVLYAVLVHAGWSCHNGHYFSYVKAQEGQWYKMDDAEVTASSITSVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRATQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVRKVEGTLPPDVLVIHQSKYKCGMKNHHPEQQSSLLNLSSSTPTHQESMNTGTLASLRGRARRSKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q1LYG5-1", "protein_name": "Elongation factor 2a.1", "gene_name": "eef2a.1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MENFNVDQIRATMDKKSNIRNMSVIGAFDHGKSTLTDWLVSEAGIVSSARAGETRFMDTRRDEQERCITIKSTAISIFYELAEKDLAFIKECKDGSGFLLNLIDSPGHVDFSSEVTAALRITDGALLVVDCVSGVCLQTETVLRQAIGERIKPVLMINKMDRALLELQLVPEELYQIFQRIVEKVNVTISTYAEDEKGPMGNVMIDPVIGNLAFGSGLHGWAFTLKQFAELYVKKFAGKAQLGPEEYIKKVEDMIKRLWGDSYFDSTTGKFSESATSPDGKKLPRTFVHLVLDPIFKVFDAIMNFKKEETVKLIEKMGIKLDVEDKEKEGKILLKAVMRCWLPAGEALLQMITIHLPSPVTAQIYRCELLYEGPGDDEAAMGIKNCDPKAPLMMYISKMIPTSDKGCFYAFGRVFSGCVSTGLNVRIMGPNFTPGKKDDLYLKPIQRTVLMMGRYVEPIEDVPCGNIVGLLGVDQFLVKTGTITTFTKAYNMRVMKFSVSPVVRVSVEVMDPADLPKLVEGLKHLAKSDPMLQCIIEDTGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPFASYRETVSDGSKQLCLAKTPNKHSRLFMKACPLADGLAEDIDKGRVTASQEMNARAQYLAENYKWEVTEARKIWCFGPEGTGPNILVDLTKRVQYLNEIKDSVIAGFQWATREGVLCAENMRGIRFDIHDATLTSTAIHRGPGQIIVATRRVLYGCQLTAEPRLSEPIYLVEMQCPESVIGNVYGELVRRRGVVFSESQVMGTPVYLLKAYLPVSESFGFTADLCANTSGQAFSQCVFDHWQILPGDPMDPTSKVAHIMADIRKSKGLDEAIPALHCYLD", "length": 854 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q1PEY5-1", "protein_name": "Probable 3-hydroxyisobutyryl-CoA hydrolase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASHSQVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAGGDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHFVPSISLTALEAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREVTQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKDFVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERVEDEEGWEDLKFPPRNNLPALAIAAKL", "length": 378 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q1ZXA5-1", "protein_name": "ADP-ribosylation factor-like protein DDB_G0292332", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDFIISFIKNLFGFLTIKKVMILGVENVGKTTLLYNIYKFYSENITTTTLSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDLKQQTIEIDEILKTYFDKSSINETILMSQNNNDDLIKCINWIFSN", "length": 186 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q1ZXJ4-1", "protein_name": "Acetyl-coenzyme A transporter 1", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLFTLLKRHFGNELNNIVWLVLLYLIQGIPIGLSFGTIPFLLHKHATYTQIGIFTISTYPYSLKLLWSPIVDSYFVQSFGRRKSWIVPIQILAGIVFITISFFIETLLEHAETKIIYITIVFFLLIFLMATQDIAVDAWALTILSKPYLHYASTCQTIGLNTGYFLSYTIFLTLSSPKFANKFLRSVPSEEGIITLPGYLQFWGILFIILSIYLAFFKDEESTTITTTTTRHDNYNNNNNDDKNKQVKSKIENESIESKSMRSSPSSLSPSLLSSPVKKQNKKNKQHISIDKKDITIIKENNENNEIIDNNNSNNNYDNGKKSIVQETYGMDISESDLTPKQVYYLLWKIITLPHIKILSILFIISKIVFQPNESALNLKLLEKGLRKEDIASFSLIQFPSIIIFSIISSKWVKNKPLTIWSNAYLVGVFFILVNMCSVFYFPNLNGGEISWSHFFLLLMISLFSSFSYNLMSVSQGSFFLKISDKSIGGTYVTLLNTIANFAGTYPKLFILMLIDKLTTSECIVNISNDNSSSSSSSSSLISTSSNNLTTTTTIIQEQQQQVIIHDNISKELCAEQNGKYRIERDGYYLVATGAIIYGVFIYFVLKRYLTPIEKLKL", "length": 618 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q23888-1", "protein_name": "Large ribosomal subunit protein uL2m", "gene_name": "mrpl2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVLNWRGVKSRLYSGKRRIDGRNKGLIAIRSRGGALKRKYRYIEHYKQKWMDKWLFVMRIEYDPNRSAHIALCSILKEGIYFYVISIAKLEVGSLIITSALKLGTLQVGNTTKIKNIPEGLLINNIELIENSGSKISRAAGTSSLIIKKYNKKYSLVKLSSKECRLISNECYATIGTVSNIERKLKQNKKASYSRKRGIRPIVRGLAMNPVDHPHGGRTKGGVHWKSFSGKLAYNVSSRKKTKMTSRYIIIGHRKQKIMDKQIKNG", "length": 266 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q24113-1", "protein_name": "Protein no-on-transient A", "gene_name": "nonA-l", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MEGAVKKNSLNSSPLPQRQQRGNSTNKNLGKPTPPKLNAASDGNPAEKKARLGGNTQNGGGVAGGGGTGGGGGGGGATGGVEFSRNRNRGGNQNENRQGFQVANNSHQKQINESPKPAAGNVPAKNNELSAGGGGQNQPNHSNKGQGNQGDQGEQGNQGPNFRGRGGGPNQPNQNANQEQSNGYPGNQGDNKGGQGQRGAGGGKHQRGNRSRRSGGSGIMNSSMGGGGQRGEDFFIAQRLLDISGPTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKNFTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFAPNAIVRVTNLNQFVSNELLHQSFEIFGPIERAVICVDDRGKHTGEGIVEFAKKSSASACLRLCNEKCFFLTASLRPCLVEPMEVNNDNDGLPDKTLNKKSLEFRHERSVGPRFACLNSFEHEYGSRWKQLHDLFKSKQDSLKRELKMEEDKLEAQMEYARYEQETELLRQELKKRELDNERMKLEWEMREKQAEEIRKREEEYMHRYQNQLLRHEEDMRARQQENDLLMQAKKLNMILDQQEGFGGSNSGFEHFDSPFEVFGNNSNNSTMAGPGGPDNSDGNQHGHIDSWGHRRF", "length": 630 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q2PRK7-1", "protein_name": "Odorant receptor 106-10", "gene_name": "or80a10", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MANETFVKNVDSFIITGFDHLQNQKLLGSLILISYMFILLGNGINLCIISTDRHLHKPMYILICNLAVVDIMYSSTCSTTMISVLLAEIKTVSYYSCISRTYFFNLGDLTECMALTLMAIDRLIAINLPLRYHSFVTNSRILWLIFLTWIFSFAVIGFLTYVADTLPYCQPIIKYVFCSYSSLVRAACVDPEPYFAISTVYSMVTLCGLFPFILCTYAVLAYSVTKLANSSRKQMINTCLSHIIVLFSFYLPKIVYILLTRIGLVLTLTERNAVLIVSCFVSLLVNPTVYCIRTKGIRKRITDIFLYTQKITK", "length": 313 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q2YDJ5-1", "protein_name": "Uncharacterized protein CXorf66 homolog", "gene_name": "", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLFIYVLLLSIWTSSCLDRNESNGSATAVTTHAEFKQTKLQELRRRLLIIVIGTLITGYMVSCTCLLHYSCDSEEAHTAAKDKKEDITIKASRSSKISFTDSKSPTAGLGDPERQSVVSRIDKSSGPSSPRKVPSSAEKLVRPSSQKKPSKPSAPKKVLGSPPQEKLHRTRSPKKAHRQAHAHKPVSQVSPSYPEKAIKSTWPPSLQCRAKPTKTPLPYPKNQSFPEQSSVDKLTKRQRYLKLKCPASAGRAEILSRPHPVKFCRCYKEKCLVCRAVSEPFITHVSDANKKHVPVPLFSRELKHFYKSYKKKQPKYNTLYGNMSDSDITTYNSDGESDREVIIMCNIKCKEDIYKNSRNN", "length": 361 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q3L180-1", "protein_name": "Alpha-defensin 26", "gene_name": "Defa26", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALFLLAFQVQADPIQNTDEETNTEVQPQEEDQAVSVSFGNPEGSDLQEESLRDLGCYCRKRGCTRRERINGTCRKGHLMYTLCCL", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3TR54-1", "protein_name": "Gasdermin-C4", "gene_name": "Gsdmc4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGYSFDRASKDVVKKLQGRDLRPVECLSDATKFRLFHILQETPRSGWETEDIPVGFTLLDLLEPNFPVPEPEVSAPKPFIHVQSTDLEANLNVADIARGGVGYVGYGGYNIEVQSTSIPNPKLEILQNRKLLDKLPTFMKFCRMERKNLYVVTEAYEVSKDTMLTGLSSVNLLVKGFFKQLFKVRGKAGRSEKYSIPIPKGSVLAYKKQQLVIENNTCVILPSATKKKMTFPDRPLKLYDLPVTLRYQEEVIETGSWIDDIDPIGTIEEPANLNFMCLQHEVSEQTQLLAELSKDVQEVVFSSFLHMLSDRDVLYDLMKMLELNQLGHMDGPGGKILDELRKDSSTPHDVLKDLNLYLLQALLVLSDTQLCLLAQSVKMGLLPHQVELVKSILQTNFKYSSNTPFTLQPQLLAPLQGEGLAITYELLEECGLKMELNNPRSTWDLEAKMPLSALYGSLSFLQQLQKANSSSKPSLSPGYI", "length": 480 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3U0I6-1", "protein_name": "Endoregulin", "gene_name": "Erln", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGQMVPPRSIQNEDFWKNPWDVGGLTVIGLFTSTFLLFVLFAVVFGYVEKAVFEEE", "length": 56 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3URS2-1", "protein_name": "Zinc finger and SCAN domain containing protein 4F", "gene_name": "Zscan4f", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIMQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSEKDPREVPGLQSRQEQLISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3ZCQ0-1", "protein_name": "Required for drug-induced death protein 1", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTVGARLRSKASSLVGRGPLGRLRRAGDEETDAIVEHLEGEDEDPESQDCEREEDGRRAGTPSARRVHLAALPERYDSLEEPAPGDKPKKRYRRKLKKYGKNVGKAISKGCRYIVIGLQGFAAAYSAPFGVATSVVSFVR", "length": 140 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI3-1", "protein_name": "Defensin alpha 3", "gene_name": "Defa3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGTLTLLTTLLLLALHTQAESPQGCTEDQKLLIMEDQDISISFTGDKGTALQDADVKSGVICNCRPRGCSFKERVYGECGYNGHILRLCCQPLNTMNKKSPSVI", "length": 104 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4JEI6-1", "protein_name": "Defensin alpha 8", "gene_name": "Defa8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKTLVLLSALVLLAFQVQADHIQEAEEETKTEEQPADEDQDMSVSFEGPEASALQNLEIGWPLKQCHCRKFCRPYEKAEGSCRPGLFIKRKICCIQQWTPGRT", "length": 103 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q4KL71-1", "protein_name": "Small proline-rich protein 2A3", "gene_name": "Sprr2a3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q504N7-1", "protein_name": "Pyrin and HIN domain-containing protein 1-like", "gene_name": "Ifi214", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNEYKRIVLLTGLMGINDHDFRMVKSLLSKELKLNKMQDEYDRVKIADLMEDKFPKDAGVVQLIKLYKQIPGLGDIANKLKNEKAKAKRKGKGKRKTAAKRQRQEEPSTSQPMSTTNEDAEPESGRSTPDTQVAQLSLPTASRRNQAIQISPTIASSSGQTSSRSSETLQSIIQSPETPTRSSSRILDPPVSLGTAYSSAQALGVLLATPAKRQRLKNVPKEPSEENGYQQGSKKVMVLKVTEPFAYDMKGEKMFHATVATETEFFRVKVFDIVLKEKFIPNKVLTISNYVGCNGFINIYSASSVSEVNDGEPMNIPLSLRKSANRTPKINYLCSKRRGIFVNGVFTVCKKEERGYYICYEIGDDTGMMEVEVYGRLTNIACNPGDKLRLML", "length": 393 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q54B59-1", "protein_name": "O-methyltransferase 12", "gene_name": "omt12", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDWDKTMDLLFGFVTGHIHSRMFETILKFSICDLLEDGPKHYSEISKIIGFKNESYCYRLMRYFVPYKLFNESVVQVGLFSKTPSSTQFSKNGTLKNLGRFHCQDHHYRIFESLPKTLEMGKNQGPSSIGLSSFWEHFETDESYKQLFHNAMKDYTSLIIDRLISKISLSPNFKTVVDIGGSHGFLIGKLLESNPNIHGINFDLENIINSSTSKNENFQHPRLKHVSGDFFNSVPEADCYILKYILHDWSDEKCITILNNIHKSLKPNGKLFINDLVLDPSNYTKEAVFKDILMMQYFDAKERSINEWHQLFEKCGFKIDSVDTSISPQLMIVSKINSSNINLNDCTNFNSEIVEEKLKNSLPQFVNC", "length": 369 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B60-1", "protein_name": "Probable inactive O-methyltransferase 11", "gene_name": "omt11", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MECSESLELVDKFACGHILSRMFNVVMKHSICDLLEDGPKHYSEISKIIGFKDDSYCYRLMRYFVPRKLFKESVVQVGVFSKTPFSTEFSNNGTLKKLAKFHCNSFHYKLSQVLPETLEIGENQGPSSIGLSDYWEQIEKNEIYKNEFNDGMIGYTTHILKFLKGKIDLSKFETVVDIGGSHGYLIGSLLDRYPNVNGINFDTDMVINSSNEKYQHPRLKHVAGDFFKSVPEADCYLMKLILRCFSDEKCCELLKIISKSMKSNAKIIILDIILDSSKYLNFDTYLDILMMETLDGKQRSLSEWIKLFEMSGFKIDKYESGSPNYLIISKE", "length": 331 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54B86-1", "protein_name": "Hly-III related family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPRLDHKKNKEEKDNEPLMMVNNYNIGIQTDNNQEDIQNDYHHFNDLSINIKNNKNNNNNNNKCNSLHHKHYHNRFIINGGNNNNDNNNNNNGDDCCANIELFVDLMLSENEYILSGFRLHTKNSYMECTKSIFKLHNDTLNIWSHLLGALFYLVLFFTSIIKIIKLNNNDGGGGGGIGNNFILNSDEIKLLETIDLPSNFNYLFFQLSCFICFLSSTIYHTYRSHSIVVFKTTLMLDVASIALLILSSVCLIIDSELSCWPYFKRIYLFSFLILILISFLSLPKIMREKRYGLRTFLFAILALQGLVGHLFKIYLQGYFDKDPNQFYNLIGAYTLFGLALSIRRFKVPESFKPGHFDVWVNITFNIVYNII", "length": 372 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54BG8-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGKIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54C66-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKTKKYKNPFPTNSYKEPENDSDNEYILHNEEDNEDYGSNNNNINNDGFSYEDNIENSDTEDEREDYGYINYNTNNEEDDEPIDLSTPIKKKKANNKSFKPPYKNTTTTTTTTTTTPPTPPPSKSNNNNNNNNNNNNNNNNNKNKENINKESEYELNKFLDLYNDFKSESDNKVKPTATTTTTTTTTTSTSTSKLNKDKKGVIVIESDEEKEDNTIKINKRNGKRKEGEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQGNEDNLKSENFNKFKKLKSFSNQPTPLPPMLSNPFLNNSGNSHNNNNNRILFNSQFTNASNLNNNINNNINNNINNNINNNINNNINNRNNNTNNYTNNNNNNNNNNNNTNNNNSNNNINNNNYNNNNNNSFSFLPIRSNTLPTIVTRRTGIQSSSSDNGNSNSNHSSSMNKRNTSKSNNKKSTTTTKTVLPPPLSSRTQEEEDYALALSISEGLNGGSGGGSGSGSGSSDNSTKTKRSKSENDLPNEETRHQVEMDRRFAEQLHREQHENINQIQQLQRRLHLNQQRTNNINRNHHGDEDEEDIEMLNLRAYQQIQQQFNQHFNQQLNQLANHPLANLFSHASRGRGRGARRIPHHPHHHHHPHQAQYLTGLSQEQLNLMTRDFSSNDYELLLQLDENINNKGATTSDIENLPVHTLNKPTATTTSTTTTTNSSTSDDNKKNEPTTDVTCCICLCEMEPGDAVRTLPCKHFFHVSCIDQWLKVNKVCPIDKKAIDEK", "length": 766 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54CY8-1", "protein_name": "Obg-like ATPase homolog", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKGIKLFNNFTNTKQILFFRSFSTAAKGDRLKASHYVKTRGSCKSISIVGLPNIGKSTFFNALTSSNAAMAANFPFCTIDPNIGKVFVPDERLDYISDLLKTKSKIGVQLEFVDVAGLIKGAADGEGLGNKFLGNIRQTSLICHLVRCFEDKGITHVSDEIDPIRDIETIETELILADLQSLEKMLTEGKKKQSNPELQMKFDLVKRISEYLHKGLPARDVEITDMEWPVFHSLHLLTSKPTIYTCNVAEGDAATGNKYTDLVKEYSKSKGLEIEPVVISAKIESELANMEGNDETKKEFLQLYGLENNGLSKVINGAYKLLGLQSYYTASSNECHAWTFKAGWTAPKAAGVIHSDFEKGFIKCDTISYNDFIECKGDEKIAKEKGKQRSEGKAYIVNDGDILFFKFN", "length": 409 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54D44-1", "protein_name": "Probable polyketide synthase 42", "gene_name": "pks42", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIESQREFNCIGGDNQNGVAVIGVGFKIPLDLENCLSSPSELYSALFNEFDSVTKNTSSRWSDNYFKNGDIVSLSAGLLPLREIKSFDPTFFGINPSDADLIDPQQRLLLKCVWNALEDGGIDPISIRSSDTSVYIGCSTIDYFLLNRNPVDPHNHGIQTASYSIPNRISYCFDFRGESLFVDTACSSSLNAVHLGYNSIINLKSKLSIVGGSNLILDPQNSIFFSKQQVNGPSGKCNSFSEEADGFVRSETVGVVVLKNLKDAIKDGDRIYCVIQGSNSNVDGNYEKLNYISPSKLSQAENITKALKSTNGAVNASDIDYFECHGTGTPTGDPIELEGISIALNRTQQSTTLSNPLLIGSIKSNIGHGEASSGIASLIKCCVMFKYRQFLPNINFKTPNPLIKFKEWNLKVVTEPVPFNNNKQTIMAINNFGVSGSNCCIILSEYKSNNNNNNDFKATTHLKSKKFIIPFSSNSSTSLDNYKSLLSNETNNFQDFVIKQINNKSTSLIQRSVIIASNWSEFNESSNEIQSNIKKSIISNITIKKKNAVTVFVFCGQGSQYNKMALSLYENEHIFKSTMDKLDKELSKHYGYSILEKLRSITDEDLVTIHQPILAIPVNVMVQVSLYELYKHWGIKSDIMVGHSFGEIACSYCSGMVDFKTLCYLTYHRSVAQNKTIGSGKMLSINIGAKEYLDSYSTKYPSVEIACYNSETSIVIAGNEELLNEISKDLKSKDIFTAMLPSLSAFHTTHQSVIKDDICSLNFKSTLSKITVFSTVTSNQFGINNNNNNNNNQLNSNYLFQNVIQPVKFSETISNIYKYIESNDMGNEITFIEIAPHPTLQYYLNQMKSQQSEYFNNGEKISIYSACNKKKNDYNEFLKTISTLFVNGYNNINFKSQIINNNNNDNNNNFNLPLYQWDDNEYYKIHPTWKKANKNGPSINHLGNLNDSSIKSFKTYINTRKPQFQWLKGHSLKGKVVFPGMGYISNLLSVYNMNQDITINEIQFKSAFILVDGVNNCLETSIVPLTKNEFNIKFHFKDLKTNKWVLCANANYSLFKHNDNNDKLDIEKLKSNCNYTIISKDELYNNIRAKSGLIYKGLFQGVKEAFIGNRCSLTVLSLNEIENQQEFKHLLENRNFNSLFNTAILDSCLHGSLHSKEQSQIYFDKCEGFKYYSNNINLATSKRNEYKEINVYIETNPVINSTVIVSLKIMLPDGTLLIEIQKVVCKSSIPIIDSTSVIQPSPKDLHTPYYQPKNSLIKPPQSFKHLHCMKEFASIESDNREMVYMSIYHLIFKAINARSPTKINLESLENLTLDQFKELIKDSAANIQRSNQFIYECLKLYHTNHSNYKKNQIKDFIKECEDFNGYNQIIFKTIKIYAKSLFPLPDDDPFTDTIQSLFEDDQLENVYIHLKHLYPVNNLLSEIVFQSIKPIINQTSTFRILEIGAGYGTISQLIFDKLEQLLADNFTSSRIDIEYTFTDISNTFLPRAKERYSKYKRFNIIYKLLDLELPLTEGIQDFRPLYYDIVVMSNVLHVVKDINFSTNEIYKVLKQNGQLIFVEPTYKNLYLDTIFGIFPQWWSFNDDIRTDRCCLEPSKWFEFLETINFKDTIILGQDNKEILKNVENSIILVQTRKPSQLELSINNSPSTNQFKSFENIILYTDDNQQPNDCSEIIDLLKSLELPIKIINNIDQFNQIIKTQYNNNNNNNNNNNNNNNNNNNNTNNNLIIFLKSVNQLNTNNYKDITFEYVQINQILVKLELEENYKLLLITNNSQSSNYLSNSLIGTSRYLFADIVSSKLDIITIDFDTVSIKNHQNVISVINHLLDSKDNSEREYYIINNEINIERYKNESNIKHQLKSKTFQENKDELMVQLDSNLEYRLKSKSKQELKSTHVEIQVKAIGINYKDYATYSGLIDSIIEIDKDKEKDENYDQNYPSIGNDFSGVITRIGSDVRKFKVGDEVCGLAPKTSASHIITEEGYLCKKPSNISHSEAASSVTVYTTSFQSIYSIGDLKKNETILIHSGSGGIGLSALEILKWKNHQGYIFATVGSEDKVKYLTDTYGSFITGIYSSRDKDYQDQIKEKLKSLGCDIDHQGVDLILNTLSVEYMDSNFKCLNQKGRCIDLSITHLTPFDYMDYNKFKFNVSYGNIELVVLPSKIIKDHLKKMLKAFSLGSLRFIPIVEFSNLNIRNAVEYINQRKHIGKIVVKNDVDFINKLFIEQQQQQNSVENNEILMKDKYDISNLELGKNILLTGQTGIILTILKWLYKHSNNSIENIIIISKSKLKWELELFINESTNNRIKIHYKQADVGNNNELNQCFEELRLRHSIEDINSIFHFAFINDIGQFEDVNMNRMDIAHHAKAIGSLNLHNQSIERKWNIKQFVLASSALSVFGGDNQCCYISACSVLDSLSKYRKSIGLPSLSINFGGVTSTGFVSRSGAVEANLESSIINLITPQSLISSLDLFIQNSQTFSNYTHFNFIYDNIESYSLNRMLFKFDYLINQHSSLVSNKRLGGINENNNIGDLLVSKIGELLSIEPSKLNLDFRLVDYGLDSLVIVQLKNFIDKQFQPHLISILQLQNNKISTTIEIIIKGYNNNQNKKIKNEQSNDIPSVVQKETIKDNNENKDDIKIDMDDKKENLKGKKENIDDKKENNN", "length": 2655 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54E06-1", "protein_name": "Transmembrane protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTIINNDNISLATSAKLSQFIVSGDYKGPFTIIGLKTKILSFSLVIEFILLKIELIKERKDGLKINFDDSISGSCNYELNYTKQDTLFQRFQSKFKIEHTINPENGETINTGITLKKLFIISIPMSILFVALNWIWMLAISMTEVSISTALYLKILKTISVIIFMGGIVGIAITTVGTSKGEYPHAIKGEILMIISAAMWGLYEVLTSKFIGDANRTIVHTYMGLIAFVNLILGIPVIVILNVTNFEPFSVPSISVFGMLLLNAFVGFSVNYLINWGLSVTSPLFVRSGELMVIVATLLFDIIIKHMKLPLLALPGYSLIVIGFILSVYIESRDIKQQQEKEKEKQKNNNGETESLLNY", "length": 359 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EC9-1", "protein_name": "DUF781 family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLNKIILIFFLINNIFSIVVSSTKLNPWVFEERIKLYDILINSTKVEIFGDDNLNNCFQGFKIQLEWQKTTGRSMIIDNSNISVNSWWGSMNYYESIIPFISAMNLGIIQPPIELVNIGDDRFCTDYSECDKELMEPWDLYFQFLIKIKDEKYSYSIQQQILKYNWDGHMKSLSIGLKLFNDKLNYLSKNEIKFSTGFVHFVDIISLINFNTNYSQILPIFDSLPPRMLTNSDHPPFFKGFTRTQNFYTVSVLSINELHENQILWNYFLNLLKTKTENEKCRDFINQEIINFTKYPESTLVKLLLKLLLNNC", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED6-1", "protein_name": "Probable polyketide synthase 41", "gene_name": "pks41", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDSKNLVDENCNKVAIIGIGFRFPNLKGDITPNELWSKLLNRYDGIVKNDRWNESFFKSGDISTNYAGFIPFEELKSFDPLFFGINPSEGIHMCPQQRLLLKCTWEALEDSGIDPIEIRGSNTSVFIGCSGADYQNLNKNDNKVQQEIFSSSTHSISNRVSYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNISKSYSRLNILSKDGKCKSFDAGADGYVRSDAAGIAILKNLNDAIKDDNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGQVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSDNPLLIGSFKPNIGHTESASGISSLIKCCLILKNQCFVPNLNFNKPNPLIKFDQWNLKVVTDPIDFSTLNYINKRVSIAINNFGVTGSNCCLIVSSFKGNQIRNNINNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVVIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNVTMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLNEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKKDGVFCAILGSPTSFHTSSQLSVKDEILKISFKSKQPTIPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEVIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSDHNNTNNQTRVNLPLYQWEDQEYWKLDNLHQYHLSNGPSINHLGISNSNHTPIKSYQTHINIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGESKTDTNPNKELPDILISFIEFKTPLIFMDGISQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGPNLNEDDEQSLFMYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVDKCYLGYNCSLSEISIIQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEELTYYSSKVPKTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDPLAMEYPTNEIYSCNLQSKDSLIPSLSSFDHIFKRKIPNEYVDQINIYESFIPKLLFSNINKRCPEITIDEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRFNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIIGDGIFGVFDQWWSFQDTEIRKDRCCMKQKTWYKLLKSVNFNDDIRMTPELTCFVIQAQKPSISNLSFSKSETTNYDSIIVFGNKYASNLSNHFIKSIDNGNLQFISTIEELNKIGKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNCKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITRISTGSKEFKVGDHVYGIGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITHYSIEKVKESIEFINERVHMGKIIINHENQDSIINELIEKQKSINKFDQSIFKQNYKLEPSLLGRNILLTGQSGIVLEILKWILRNSENNSIGNIIILSKSSIKWEMEYLINKVKLINKLGNFFNNIKFHFKSVDISDSGLIDESINKLLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKLKNFIMSSSVSSKTSTANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIESTGFVSRNESVAALLSGEGFIPISANLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISEILSTDILKLNKDIILVDYGIDSLVIIQLKNWVDKEFSIPNELTIQKIQNSTINSFIQLVKNSMDKNKK", "length": 2542 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ED7-1", "protein_name": "Probable polyketide synthase 40", "gene_name": "pks40", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDYKNKYQSNENCNKVAIIGIGFRFPNLKGDLTPNGLWSQLLNKYDGIVKNDRWNESFYKTGDIPTKYAGLIPFEELKSFDPLFFGINPSEVIHMCPQQRILLKCTWEALEDSGIDPIEIRDSNTSVFLGCSNFDYQNLNKNNNKIQQNIFASSSHSVSNRISYCFDLHGESMTIDTACSSSSNAIRRGYKSIIDGSSNISVVGGINILLDPNTSKSYSQLNMLGKDGKCKTFDADADGYVRSESAGIAILKNLNDAIKDGNNIYCVIDGSASNVDGNGFSDKSNFYSPSKSSQVECIRLALESTNGGVNENDIVYFEAHGTGTPTGDPIELESVSIALKTSENRSSNNPLLIGSFKPNIGHSECASGISSLIKCCLILKNQCFVPNINYNKPNPNIKFNQWNLKVVTDPIDFSTLKLSNKPISIAINNFGVTGSNCCLIVSSFKGNQTNNNNNKSKSPKQYLIPFSTNSIKSLDLYKSRIDNNVEFKEFAENQIKSKSKKLIQRSVAIASNWDEFNLKSNTINTSNDKLTSNMLVSSNKKNATMVFVFCGQGAQYSTMAKNLYDNEPIFKKSMDKIDSKLSEYYGFSILEKLRSFNENDLKGIQYSIIAQPSTCMVQISLFELYCHWGIKPSIIVGHSLGEISSSYCSGMIDLDTFCYLIYHRSMVQSKTNGLGRMLSISIGENEYNSKYSSRYPELEIACYNSPSSIVIAGKELILNEIIKELKQDGVFCTILGSPTSFHTSSQIPVKDEILKISFKSKQSTYPIFSTVTTNLYDEMNPFDTKYVYDNIINPVRFTNTISNIYKHIELNYSVNNNSNEIIFIEIAPHPTLSFYLKQMVPEDKKQSVSIFSPLSKKKSNDLFEIQKLISELYCLGYNGIGFNIQLSNLNENDNIQTSLSLPLYQWEEQEYWKLDSLYQHHLSNGPSINHLGISNSNHTPYIKSYQTHIDIQKKPFQWLKGHQIKGKYYFPGCGYIDNILKIFGDNSESTTNPNKELPDILISFIEFKTPLIFMDGVNQCLQTNIHSTGKKEYKALFHFKDEKSSSDWVQTSTANFQLFSRGQGLNEDDEESLFKYNINDLISNQCNLTKLSKQELYSHIKTKCGLNYSGDFQRVEKCYFGNNCSLSELSLSQGVNENRSTFFDSSIIDCCLHGSIGLIDENCQLVFEKLEGLTYYSSKVPTTTSQHSKIYVYSKLKPRIGDSYSASIIVMLENGTVLFEMENASFKSTTKIKDSLAMEYPTNEIYSCYLQSKDSLIPSLSSFDHIFKRKITDEYVDQIKIYESFIPKLLFSNINKRCPEITIAEIQSSEIEQLLLKYYKIKEDNDNKWLSRLFTFAFESIKQWYHNEDYDFENVLSPHNFKIFSKSTKIISKLLFPLENDNDEDSPQSLFEGGLLDKFYSSGFSAQNELVGEIIQESIKPILNEKLVFRILEFGGGVGSLSLLVLEKINSLLIQYPNYQIDIEYTWSDISPSFITEAKAKFEKFNDRVNIIYKALNLEQPLIGEKQGLKPQYFDYIIMFNVLHVIKDVKYGVEQIYQLLVPNGHLLFIEPIYKSIVGDGIFGVFDQWWSFQDTEIRKDRCCMNQQTWYKLLKSVNFNDDIKMTPELTCFVIQAQKPSISNLSFSKSETTNYNNIIVFGNKDDSNLSNNFIKSIDNGNLQFISTIEEFNKMTKYISNESIIYFIKSIDELSVDNFVNITHEYTQINQKLMELNSKCKHVLITNDSTTTNYLSSSLIGAARYYHECPLELFILNFDTPSIIENQNLFKTIEPLINSSINIQREFIINNHKVYYERIKNETKLKSIFKNSSSFESLEQVDNFMISLTPNLEYKVKVKPTSILKENEVEIKVMSTGLNYKDYLIYAGLVESVEPIFGIEFSGIITNIGSGNKEFKVGDSVYGTGKSTTSSHIITDIDVISHKPSNISHSEASSIPVVYLTSYHSLYNIGALKNNETILIHSATGGVGLSTLEILKWKGHSGLIFVTVGSNEKEEYLRENYGDMISGIYSTRNKNFVKQIKSKISKLNPFGKSGVDFILNTLSSSDYMDSNFKCLNMSGRIVDLSITHLNSNEFTDNKKFKYNYGYHNIELQYVDKKIIKSTLSIISNAVSSNDLQLIPITEYSIENVKDSIEFINERVHMGKIVVDHENQDSIINELIEKQKSIDKFDQSIFKQNYKLEPSLLGKNILITGQSGIVLEILKWILRNSENNSIDNIIILSKSSIKWEMELLINKTKLLNSNSINSMGNYLNKIKFHFKSVDISDSGLTDKGIHELLIENPDINNIDSIFHFAYTQATCNSDEVDLHHLTQSHSAKSMGAINLHNQSIKRNWKIINFIMSSSITSKTSSANQCGYISSNNVLDALSKYRISIGLPTICTNYGLIQSTGFVSRNESVAALLSGEGLLPISTNLILGTLDLQLQNQAQSSNLILSNFNFTSLNGLPQKSLISKFDYQININEENEKSKSLLKDDNVELTVDQLITFKISELLSTDILKLNKDIILVDYGVDSLVIIQLKNWVDKEFSIPNALTIQQVQNSTINSFIQLVKNSIDKKNKK", "length": 2552 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54EN3-1", "protein_name": "Alkyl transferase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNCSNNSENCNINDNKKKEENVKNQNSNKNSNNNNNKSNIESIILNKKSKFSSEKELDEKENKDLKDLSNNKPINIDEYEGLPRFENEQNARSKSSLWSKLCDWMYDQNFKIASSTLKNGPIPKHIGVIMDGNRRFAERNHLETKEGHKKGFNTMLDLCQWGLTLGVKIISVYAFSIENFKRSKSEVQDLMELANNKFTEMISKSHKLQQLGVRIRVVGDHSHIPEKTKSILAKAVKSTENNTKALLNICLSYTSHEEILHSMKILSKGVNQEKKIEIEDIDQDLFENCLYIKEDLDILIRTSGEYRLSDFMLWQSCFTNLALVNTLWPDFSFFHFIYIIFLYQFNSKTLKNEIQNQYKFNNNNNNNTDNNNNLKENIKNLKSDQRVKEFINHLKISEEKLFDEFISKYNEEEEEEEEI", "length": 420 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54F52-1", "protein_name": "Saposin B domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLIFIVCLLLIFNYFIGISFGNKQINSNQQQQIINTDKNYNHNKNNKIIVSHNKNNNNNNNYNEIETENLGCTFCKYLTEKVEEYLQANSTEKEIISYLDEECELLNSPNLVLTCQNLVQQYTPIVIELIDNNESPSVICENVNICPTSSSSSSSSSIEEEIIKKLNIDDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEEEEVNTCEICNLVSNLIEKYIKINNEVDEIRELIENECELLSNSKVSSCYSLVDQYFEHFYVTIENNYSANEICQLFQFCPIESSSSSSSSDIINNIPLQDSGCTVCTVLANYAYKVQANESIPEIIGSMDEICNKIGAWRDICNSIMRSGGQQLVEDIVNKGEGVYTACSNIGYCQSSSSATGTSGFSSGGSGTSTGGGYSTGDFYYKPLK", "length": 416 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54GT5-1", "protein_name": "Endoplasmic reticulum junction formation protein lunapark", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLFSKKNGFEKQLLDMETKILNLEDKLSNSRIFHQKVLHKIVLYSFAIEFFIILFTYVKSRSLESIPEKLFCCIYLVLFPIFILILTKVYGFVYKYLIKKNEVRLDSLKTGLQKKLDERKRETDYENTQKLLDRYEKNPPSPTNKPLGPPNLNNNNNNNNNNNNNNNNNNNNNNNNTLGNSMRNRNQPFNISSQQNQQQQRMIQPQQLSPQQLQLLQQQQRLSQQIVPSQQQQSQSQPQQQQPILNQPYNINNNNNNNKPPPPIQLPPQQSSQYIGNQQRLPPQQYQNEQKSKWWLDKLVDYLISDGPTHGSPLICSNCHSHNGYVPVEELSNIQFRCRVCKTFNQRDSVNNSTTNDDRNNSQNTGSNQQQSQSLQDQQPSIEEIDKNFSVTEQKNETNNENYSDSEKQLEENNNNNNIDNDSGSSSSQNTPNKKKGKGKGKGTPTKKTN", "length": 452 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H60-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MLDFFHLKDVDEFFRLLEKKNLQNLDNQIDGPGNLNWRTTYTEKDFSKVPKFRGIIHIVQIRDLGTKIHRDLLYEIMFEKLLDIARLNNESKLLKNEIQDLKTKLDEYHNNNSTTNTDLIINSFINVIDTTTTTTTTKTTMGATSIDKKQSEGDSIDKSIELDFFKIKSDQSQQSSPSHKLEEKQNQVNNITNEIPQESIKTVKQQTQTETNQQTFSSTSPSHQNEEKQDKQEEVKQEEVKQKEGIQKEDKKEEDKKEEGKQKYGEIFIIEIPQEEEKQKEEGKQQDGENFIIEIPQEEDKQKEDKKEEDKKEDKQEEDKQKEEKLEDKQKNGEEFIIEIPQNETLEIKVDTHPRSSNDDVSTAEMEVEALKTPLFAETTFVTKQQVITNKKLLVYKQSDFFPNMTTLLQSRLKDVTVQEVKDLTKIGLNDNSYSVGDFENVFVLYAVSCMGARTDSERDAFKIKSIRSIIGDKVPIIYGVFMIGKNGPTRIKVEHTQTSISITHSMSDIGRNLQNNENLKQLQSFLQQ", "length": 529 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54H72-1", "protein_name": "Tudor domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNIDFEDYEFYDDSDFEINTVDESVMTYSSVFDFLRFGKIPKFDTQTKMKHFKDNISKYRIESKDILHTNVDSKILRRLSEIPRVEKIFPDPNTLQLEVFKPNHELRNSNGELLSKHRPLQETLKLIEKQYYWECKFIHTSMEVDITKLYSFCDLCSQSSVSRDMDIDSNDEDKILEQMDIVEKSFSNDRNNNNNNDDNNKSIDEKDKMNICGIGIDLEAIKEGKLFEDELAEALGFPEYNSSVDNSFNSSVNNSNLNNSSLNNSLNNSKNNNNNDDDNNNNNNNNNDDNNNNNNNNNNNNNIISNIDNNNNNNNNNNNISNIDNSNNNNNNNNNNNNPVNDDFSFIIPKDYQSKNHLNDNENKDDEKDDDKDDDKDDDKDDKDDDKDDDKDDDKDDSKDNGYIKTNVSLSSSSSSDNERDDGDSHSDKSVDNDENNNNNINNIISDCNNNNNNNNNNNKINGRTFTSRRTRSDSNTSNSSVGSYISNSSKSSANSYDFSSSDQDYKSPNSPTVKKTRGASLVNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNSILKPKLKSKRASASTAINSFISQFITPKHPPKSSSRLKRANRSNDSSDSGDSSSNNSSRSSSDSSDNENNNSYYLPIQSRRSTSKQILKDHLKSPTKKPRRIIEEDFYHVEEKKSPTSKISTPISRSASYNFGRSSPGSSPGSSPSLSPYSSPPQSPPHVYNHNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNYNNNNNNNNNIRSILKSPQSPSISPIKTPRRSPQQQQQLQLQLQNYIPMPTKTKTPTKAPYVPNYALAPIEPKPTQKTPVHVFGGNQLSVKKRQTIEDMITEVLKMNVDTAALKLPLPKVGQHVEGKSNMEDYKDAWFKGVVKEVLPNDFFLISYIDGGEEELSYTRLKPNLTSELEPLKLEEIVVGGEYLGSYRNFYYNVYVLEILRHSIRVYFADLEMAKTIKYSQLYLLSSFVKR", "length": 998 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54HE0-1", "protein_name": "Conserved oligomeric Golgi complex subunit 5", "gene_name": "cog5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNNNNNNNEGVSSSSSSSSSPLPNISSPNLISNSNIENDIEIKKKSNNNNNNIFEGDNSHIYNQFLGEDFNVVHYTSNALKVSSISLSLNTLTSCTRELGQELTENITTNYDDLFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQLKRVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGINIIDSQVVWIKTCSDQIITISSTLLYQGMENQNQTDVANSLQVFHNMTILNEKVYSIVNLTTEKVIKNIKALLNVNKLIADLPKTTITNNINNNNSNNNITTNNNNNNYNNNNNNNNNNNIISTSTDKSIWLKFESLIDTLYSSLIQILHLQRVLLKIKDPLTHKSLMEVLLIKQHQLQQQQQQQQQQQQQQQQQQQQQQQQQQQVGTTSNNTQPILIEMISTLFWKSILKVLENNLLVAAKSSNIIENTFIREYPKVSKFFLDFIKKLQNYIDIHQMDIQQQFMIVLSNINQIIGNNNSNNSNSNSNNSIESSLSTSSSSSSSSSSSSSTTTTATTSLILLSADDYKLSLFKSIGLFEKAYLEYSQSKMSTIVNGLFPQSTWSSRSTLPVIPNGKQLVDLSKTIWSEIEWLVGNNDRQLLGKLMLVVSKVIDLFSSKIESMVQPPGLIVLNSNIGSSSSTGGVNNNSNSNNNNEIITINENSKPTPSQTVNTLLFNVSIQLNSSIQSLLTSQPLERESIIVIEKSLNSLITICTNIITPLMNSFFTHIEQIFSTIHNEDWYNEKTTKMLINKSNQTCSSYMESFKTLVNYFQNQYLMRFTPCQLLNNQIKSMISKIFIVYLKYCSLLKQPFSENGKLKMVNDLTHLEFAVTPLLVSGGIKEIGESYNLIRNYKQSIFN", "length": 898 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54IX3-1", "protein_name": "Probable polyketide synthase 26", "gene_name": "pks26", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METNNNKNIQEDIAIIGFRIPGCQDNTPSELWNNLMNKFSGVGKTTERWSDNYHLSGDINNGNSGLLPLKEWKKFDPAFFGINPTMVSTIDPQQRILLKCTWEALEDAGIDPIKLRGSNTSIFIGCSTGDYLDMVKSNNEIQTNLFGSVNHSLSNRISYCFDFHGASMTIDSACSSSLNTVLLGCQSINQGKSNLCIAGGVNFILDTTIPTAFSFLNILSKNGKCMTYDEGADGFVRGEGAGLVVLKSLKDAIKDGNNIYCIIKGGNTNVDGNGNADKANFFQPSKQSQSDNIKLALESIKKKSMLDIDIDYVETHGTGTPTGDPIEVEGISKVFKENHSPENPLLIGSLKSNIGHMEAASGVTSLIKCCLMFKNKSFAPNVNFQKINPKIKLDEWNIKVVTEAIPFKKNKITSMVVNSFGVTGSNCCLVLTESINNNNNSNVDKITKNEKEYLIPFSANSNQSLKNYIEEVSKIDESLQFEDFVYKQLSNKSTSLFQRFVVTSKDWKELKYKLSQPLPLKEISSSISVKKPNPITVFVFCGQGSQFNKMGLELYNNDKNFRNYIDRFDKKLLEYYGYSVISKLRSIDDNDLITIHDPIIAQPATAILQISLFELYKHWGINPSFIVGHSLGELPMAFCSGMIDFDTVCYLLYHRSLAQSKTNGCGKMLSCNISSEEFVKNYSPRYPFLEIACYNSPNSIVVAGKESILLELSKEFKNSGIFCAMLGSLSSFHTSSQLEVKDHIYSLKFESKEPVIPTFSTVTTHLFNSNKLYDNDYIFQNIMKPVLFNETISNLYKHVENNQLGSEMIFIELAPHQTLSFYLKQLIPKDSNYFSNSNSITILSPLHKKKNDYLEIQQTISTCYCKGYDVNFKSQILIESKTNISNKSLPLYQWDDKEFWKDLEKQKRILQGPPMDTLGFSNEKSPILKSFETKIDIKKKPFQYLKGHIVKGKIYFPGVGYIENLLKMYPSQDIDIDSMEFEAPLILIEGIVTCLQSNVYKIGKNEFKVQFHFQDQKTKQWIQSSFANYHLSHRDDFDPTTNKLNIQNLISNNCNLTKLSKNQFYNFIKAKAGLSYNGEFQGVEKCYLGDNCSLVEIPFDTSNQDVETNINMIPILDSCLHGVHILYVEQCQMVLEKIEGLKYYSSTLILSKQKEQQKLYVFTRIENKDLINNSISASIIVMISDGTVFFEIESVSLKSLIPLKDPISIENPTDELFSSYLQSIDSLISEPSSYKSIYKRNEFISSGMSDLSRSDYQQFISTLLYTNLIKRNQSIESDLRNQIEFEEIKAKYCKNSKFERLFTFVIETIKQYDGINGNLNSWNEGNIDIYKILIKSTRIISKLLFPLQGEDTTIDTPQSLFENNLLDDFYNINGNTVIQNQLVGEIITQSIKPLINEKMVFRILEFGGGVGSLSIVTLNKINQLLEQHPNFQIDIEYTWTDISPSFIPDAKKLLSNIKGVTIIYRSLDLEESLIEKQLLKPSYYDFVIMSNVLHVIKEIKFGIDEIYKVLSPNGQLLFIETPYRMLICDSIFGVFDQWWGFTDTGIRVDRCCMKQKTWFKLLSESNYQDIIMSDDIKDCCFVIQAKKPSISSLEYKLKIDSQENDKIIVFGENDTFMKYLENKSTKQIIKIKTCQQFSDLITSNSKEINNQSIIYFIKTLNQLLIENFKEITLEYIQINQLLLSSGLSCKHILLLNQSTSENYLGSSISGAARYFDEFPPLKLYSFDFDKYSLNNESINIIDDIIEPIIKSMNNSNIRKELLVRNNKIFFERYKQEKRIKENYKSTSFENDKSLFVHLNANLEYELKSKQVKLKQNEIEVNVKATGINYKDYLVYTAMTPSELINHKGESNPEFGHDFSGIITRIGDDDGDNDNEFKVGDQVYGIWFNTTASHIIVDKEFLCHKPSKLSHTIASSIPVVYITSLYSLYNIGNIQNDESILIHSASGGIGLSALNILKWKNHKSHIFVTVGSKEKEKYIHDTYGDFITGIYSSRNKDYLKLIKRKLTELGSNKKGVDIILNTLSSSEHMVSNFKCLNHRGRIIDLSITHLNHNEYTCNNNFKYNYGYHNVEVLFVKGDIISKLLKNITSAIENGSLSTGIPIIEFNDSDCFNAIEFINKRQHIGKIVVNHNKENLIQELIKKTNLPIIKSNYQINSDHLGKNILVTGQSGIILEILKWIVKYSTNVENIIILSRSSLKWELELLVNKNKNKLNFIYKSVDVGNSLEIEKVIDEILMENPQINNVDSIFHYAFTQISCKEHEIDQVHLNVSHQAKTMGAINLHNQSIKRNWKLINFIMASSAAGLIGSTDQCSYVCSSNVLDTFSKYRKHVLGLPSICINYGLIESTGFVSRNQSVAVMLDGQGIRPMQTNQILGSLDLFIQNPSKSTNIILTSFNFNEFATGNLQQSNVHKFDFQFNCCLSQKSKLMANNQASENPVKDLLINNICELLSIDESKLNIDIRLIDYGSDSLTIVQIKNLIDKNLLIPNLISIQMLQNNSISDNIKILTDSYNKKKQNEQNELKNIKVGSFTKK", "length": 2531 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K45-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKILYLIIYLTLTIVKGAPLYNCKKLNCSSMNTNCKVFGCSPMFGCFETSKCPQSNVDICHTNHCDENTGSCYQIADTCNDGNNNTIDSCGPYGCVNTPVNPPEPTQSCEQKCNDNNPCTVDFCDFRGDCYHYETRCSDYDACTLDTCGEKGCEYRPMNCDDNNPCTADFCSMLYGCYHEPIECSVKVPCRTDSQCNRNNFCETYSCDLSSNICDYYTRDCGGNPCINNECRTGTITN", "length": 239 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K50-1", "protein_name": "Phospholipase D Y", "gene_name": "pldY", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIINRLFIIIVLFFVNVNSKIISESTLNSCQGGTIQIAESIPLGLDISTNLSTHDAWMDLITNAQESIDLGFFYFTLLGGSDLDPVYGGQLGIDIFNAIVEAHSRGINVRIVQNEPSESFPDTETQTLAKLGIQVRSIDWVSLVGSGVLHTKLIIIDESSAYVGSANADWSSLAQVKELGIVLKNCPTMVADTEIAFQQYWNAADFTSLPINDWGSNYQALFNNTNMASLSLNNNNNNNNKNKNNDNDGSGTNQMYEMFLAVSPPQFQSTYRTGDIDALMDAINNADQSICITVMDYTPTTLYNDPNTYWPLIDNALRAAAFNRNVQVRMLISHWNYTSPIIPQWLHSLNQVDNIQVRWFVVPDFSTNPQIPYTRVNHAKFMVTEKQSYVGTSNWSQDYFTVTGGLSYNVFNNDFTNQLQSIFNRDWNSPYTQPIQNF", "length": 438 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54K65-1", "protein_name": "Band 7 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNSIKKLSTTAIKFTKQTQRFNKRGFFKILNQYERGVVFNFGKFHTVKEAGFHIVIPFIQKCDIVDIRTFTYTLDKQKIISKDNINLTVDALVVFRIHDPKLAVTKANDCILLVNEMAQIKVCEILSHNTLDQVLHNRDKISNQIHDELKEALNKYGVTIEYLKLKDIHFDETIAKAIAKKVEAANLRDIKN", "length": 192 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KF5-1", "protein_name": "Protein LEG1 homolog", "gene_name": "leg1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSNKTIFLILLFLINFNSIYSFNFKKEIKISNDKINLPTYNPWIFQDRFNLYSILINSTNIPVFGEDNSNNCLHGLQLQFEWQNRSGRLEINQGHVNTKSWWGDMNYYLSIIPYLSAMKMGLVPVVEIVSINDQRFCSTYEDCDQEVLNNWDNFFQQIINIRNNGSEGDDQQLLKFMWTAHIGSIDKATKLFTDSLLLLPKNELRFGNGWAHFVDVIATVNFNTNYSTVYHLGQQLPPIMLNSNDTHPSSIESFTKEQRNVVLTMYEINDLSSNNLVWNSFMYLLKKMTKNEICRNLINNEINIFLNSPVPTIIEILFDILTNNC", "length": 326 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KK9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTEVPNQKHNDGGVGVTVGNFVKDNETNVNNNNNINGKGENDNNNNNNNNTIIDEPKLLNNNNNNILVIPLTTNIIDNELNQQKQHTLPLPLPPPPLPTQPQQITPPLPTQTQLPNNMLPSPRPIQQPKIRQQTQQQQAQMQQLQLQIQQEIQLQLQQQQQQQLQLQQKQNESEINGLFSPNFSSSSSSSLSTTPNMHSPLFNNNNNNNTTTTTTTTTTTTNSSTNNTNSSTQTKNASTNKISQDVIGVFDDTDTESEGEEYHSGRSIDFWNKDYKDIAWRCNWIDLQIRDLQYQSMVCDQLYHKVRRSKQKIIPDNKSLSSSIDNNNNNNLKSIPIETIDHSNNAITSSNIPYSNNEEEQQEQQQHPSQSIRTTSVVKLRKPRKLIRRPTVKLSAKQMTTDLEAHPLFTFHKGYFKFENAIKTNIINEMEIKYQEKEKPPKLLTLSEERLKQYINSNEDVDVVNLFATNESKRLSEKRRGRIPSDKKEKVSSHRLKSGDEIDGTSSSTATATTATTTTTTTTTTTTTNKKSRRSRREKKKEKEREKQEKEKHIKTKDEQKDREKKEKAREKELEKERKREKERIKEKERQEKERLKKEKELEKNKKKEKKLLKEKEKEIKEKKVKLKNQENIIEKDLTINNTTTKTTKSKKSSSKVKKSEQEGVKLENVEIEDEEVEEEEEEEEEVEDEEEEEEEEEEEEEEEEEEIEEVEDNEEEKRKEERRRRRRKRRILRRRKKLRRKQRKRQLFLQKQQQQQLLQQQQQQQQQKLLQQLKKRDESNGLSYKEIITPEWRDISSFANNDPSLPSPLLLSNPLLAQDIKNITTTTTTITTSEPISKFSTITEEELLIRQTTNGIDGTPMNGIGEDSESSGSEIELDEDAMKIIHARNEIEEKRRFFNTIKQIQMENPVPSYKRKKESLPVEFVAPTVEELLPSYHFNKKSIKLLGKSWNGDFEYYSSSDEDDYDDSDDYDSDDDNDDEDDDDSDSDDEDESDSDDYDSEYDSDLSDSDDSESESSDNELDGLYSSESEINHNSSGDEDEMDVELNNHHIPSKNSKNSKKQPVNNNVNNSNNLNGSSGGGKINSKPSKQQPRNSKANPPSKQQPTPLKQQPTPLKQQPTPLKQTTTPSKATPSPKQQSQQQQQQQQQQQQQPQQPQQPQQQQQQSPKPTPPLVSTTPPLSSVPLSPPTKTIRSTRGVSSLSNSTSSLPKQTNTPPISILSRKRNQSQSSVTDAPLSPTTTATTTTSPKPTTRRKGKLQETIPVEETKIIEETKPFEETVPIKENSTTTPLKRTRRQTKQQLVNGETTTPLTNGDNHVEKTDSNSTDVKVDPTSWWGDKQYKIQPVMEATVIRFKRVKNDDGDDDDQIQNNQKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNINNTEDLESKIKETKSINIPMEISTNGNDFQMKEKEGE", "length": 1472 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU3-1", "protein_name": "Probable polyketide synthase 25", "gene_name": "pks25", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDNSYLNNPQFDINNGNKEVTDDDNNKNNQDNLVAIVGVGFRLPSGENERNNTPQALWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGITPNEAQTIDPHQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGSSTNDYLTLNRNEVKSNVFGSMAHSIANRVSYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDPYPYKAFSILNMLSKSNGRCKSFDASADGFVRGECIGVVILKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPNGDPVETEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNENKNTSMIINNFGVTGSNCCLVLSQFNNTNKQKQQMKTKINNYLIPFSANSVESLKKYQSLIINSKENELKYSFEEFVKNQVFIKPTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKRSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGLGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGAGYIDNLLKLYPNQDLTINSIEFKTPLILSDDNGQFLQTNVYQTGKSDYRAQFHFKDNRTNVWVQTCTANFQLYNNGKVDKLNLEEIKSTKCNLSSIPWDKFYPHIKNRTGLNYKDKFQNTIECYLGDNCSLTEISLELPENFHDQESFFNTPILDICFHGSIVLIKDNCKLVLDKIDGFKLYTSNIPKNRFDHLSIFVYTTMKSTKSNSYNSTYTVMLEDGTVILEVENLICTSLTPVKDPLLIEIPTDMYYTPYLQSKDSQIQSPLEFKSIYQNNQDNDSLLIPNVVLETIKPLINEQMEFRILEFGGNNLSNSTLLLNSINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIKYSLNQIYQILTPNGNLIINEQQPNNENNENNEDSLKNLLVNCNFNSDIMMKSSSVSDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCNQDEQFQQQQQLINKFESHYNNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSITFEYVQINQKLYEFKSKCTHVLITYDSQSSNYLSSSILGAARYFDEIPTLQLFTFDFDKDSLINLDISVIDHLIDPKQNTLIEFFIKKNGKVYFERFKKGLKKNSFKSESYHQITNEQEILISKLDENLDYQLKSKDSILKPYDIEVEIKATGLNYKDYLVYSGLIKLKGDSVDFGLDFSGRVSRVGIKSSKEFKVGDEVYGIGQSTSSSHIIIDSMHACHKPSKITHVQAASIPAVYATSIHSLYNIGNLREGESILIHSGSGGVGLSALEILKSNNHSSPIFVTVGSEEKKQYLINTYGNLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDSNFKCLNPEGRIVDLTITHLNPNEFIDNNKFKYNFGYHNIELYYCEKPTIKKLLQSISKSIENNTLNYLIPITEFSNSNIKKAIEYINERKHVGKIVISHDTDITNKLIENQPKIDYSLLKSNYKIKNLGKNVLVTGQTGLILDIINWIMKYNSTVENIIILSKSSMKWEMEFLINNNKTKIKFYYKRCDIGGDSDSINKTFDKLFTENPTITNIDSIFHFAVVQITRKVKDIDMKSLNISHDAKTIGAINLHNQSIKRDWKLSNFILASSILSKVGSLDQCGYVSACCVLDSFSKYRLSIGLPALSINIGAMGGSGMVARSELVETVLNGQGYNLTSTNQLLGTIDLLIQNPGQESNNLMVGNFNFPVFNNFKQKIHQKFDFIFNALDSNSENGDGSNIKNSTNIKDKFLNKVSEFLSIDSSKINNDIKLMNYGADSLITVQLKNWVDKEWSPNLITIHQIQSNSIGMVCQIINDNFEKKK", "length": 2380 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54KU5-1", "protein_name": "Probable polyketide synthase 24", "gene_name": "pks24", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQNKINKAEILQVDDKHVEENLVAIVGVGFRLPSGSIENERNNTPQTLWNNLINGFDGVVKTSERFNDNFFKNHEIANNYSGLLPLDEVKSFDPLFFGINPNEAPTIDPIQRLLLKCTWEALEDSLIDPISIKGTDTSVFIGCTESDYHNINKNEVKSNVFSSLNHAISNRISYCYDLHGNSITLDTACSSSLNAIALGYDSIKNKKSKMSIVGGVNILLDSYFFKAYSSLNILSKSNGRCKSFDASADGYVRSECIGVVVLKNLKDAIKDGNRIYCTINGASANVDGIGYSDKSNFYSPSSISQSENLKNAIQSTNGTVKPSDIDYVEAHGTGTPTGDPIEVEGISKVFKDTRSTDTPLLIGSFKSNIGHCEAASGIASLIKCCLMYKNKCFAPNIHFKTPNPAIKFKEWNLKVVTEPIPFNKFKNTSMVVNNFGATGSNCCLVLSQFNYNTINNNINNHNNNHNHNHNHNNIKINNYLIPFSANSVESLKKYQSLIIENKEYESQYSFEEFVKNQIYNKSTSLYQRSVIVAKDWNDFNNVENQVKYQTSSSTSSNITITNKNNNPITVFVFCGQGSQYNTMALELYKNEKVFRNSMDMLDNKMKNYFGYSILEKLRAIQDSDKCSVHEQTMAQPSTVIIQVSLYELYKHWGIKASFMLGHSLGEVTTAYCSGMIDIDQLCYLIYHRSTLQIRTNGSGKMLSINISSDEYKTNYMSRYPTIEIACYNSPSSIVIAGNEQILNEISKELKEKEIFSAMLGSLSSFHTSSQNIIKDDILNLNIQSSQPVIPTFSTVTSNLFNESTIFDSEYFFDNISKPVSFTQTISNLYKHIEDNQIGSNIVFIEIAPHPTLSFYLKQMIPKQSQYFRNGESISVYSTLHKKKNDVEEFQKSISQLFCDDAYDINFKCQFNNINSNIEAISNFNLPLYQWDDQHYWLNKSIEHKNNLIGPPISILGNSMQDSNPFIKSYQTIIDTGKDAFKYLKGHNVSDKCYFPGTGYIDNIFKLYPNQDLTINSIEFKVPFVLTDGIGQCLQTNVYQTGKSEYRAQFHLKDEMNNQWINTSNSNFHLNSNDNYHEEKQKLDIQDIKQTKCNLSSIPWDEFYSLMKTQLGANFYGIFSKVVECYIGDNCSLTEISLELPENFHDEQSFFNCPLIDACFHGTVILYIQKNCKIVTDKVEGLRYYASNIPKNRDEHSSIFIYSTLKSSPSDDLLSSSIVVMLEDGTVIIEVDNLVVKSLTPVKDPLLIETPSDFIYTPYLQSKDSQIQSPLEFKSIYQNNQVDDGLLIPNVVIETIKPLINRKMEFRILEFGGNNLSKSTLLLNEINSLLEENPHYEIDIEYTWSDNNSSILKDAKLELSKVDKGYLSILYRSLGLDVDNSLLEKQKLNPSYYDLIIVSNISNLTKDIEYSLNQIYQILTPNGYLIINEQQQQQQQQQQQQQQQQQQQQQLLNNENNKESLKNLLVNCNFNSDIMIKSSSISDSDIKSIIIQAQKPSLKLQPKTINTFDQVILYCYQDEQLQQQQLINKFENHYNNCKIIKVSTIEEFYKLSTTITNNSIIYFIKSIEQLTLENFKSVTFEYVQINQKLYELKSKCTHVLITCDSQSSNYLSSSVLGAARYFDEIPTLQLFTLDFDKDSLTNDLDLFKTIDYLINPKNNIQREFYIKNSGTVYFEMYKKELKNLKNSYKSESYHDLSKQQDQLVSKLDEHFEYQLNSKQIDLEPYEIEVKVKATGINYKDYLKYNEMIKVNEAGIGFDFSGVVSRVGIKSSKEFKVGDQVYGIAYETSSSHIIIDSLLACHKPSKITHVQAASIPAVYSTSLYCLYDVGNLRDEESVLIHSGSGGVGLSGLEILKSNNHSSPIFVTVGSEEKKQYLINTYGDLITGIYSTRDTNYQKQIKNKLIELGYETHGVDLIINTLSSEFMDTNFKCLNPKGRIVDLTTTHLNPNEFIDNSRYRYNIGYNSIEILKVGKSTIKKLLQSISKSIENETLNALIPITEFSNSNIKKSIESIKERKHVGKIVISHDTDIIDKLIEKESMIDYSILKSDYKIKNLGKNVLVTGQTGLILEVLKWITKYNSTVENIIILSKSSLKWELEFLMNYNNNNNNNNNNNKIKYHFKKCDISNWNLINKTIDQVLKDNPTITNIDSIFHFAALQINKKLKDIDMNSLNVSHSAKTFGAVNLHNLSIKRDWKIINFILASSVVSVLGSFDQCSYVSACCVVDSLSQYRKSIGLPSFTINIGGVSDRGYLSRHKLVEAVLGGQGVELISPNQLLGTLDLQIQNPNMPTNAFVNNFNWPLFKSFKQKLHQKFDFILNPINVDNSISMENDTNQSSSSTNVKNKFLNKVSELLSIDPSKINTNIKMINYGADSLITVQLKNWVDKEWSPHLITIQQIQSNSIGMVYQIINDSLDKKKKEMDEKLLPITAKTTTTTKNDPNDKTEYKYIAGGDCCREFSIKFHYSSVVNFII", "length": 2471 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LI2-1", "protein_name": "DNA replication licensing factor MCM2", "gene_name": "mcm2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSQNNNNNNNNNNNNNNNNNNKRKTKTPSSVNHNNTKINEDKDLYNFIDKIRDKTDKSHLEDEYDEDDNTKDGKFNKVEDEIKNDIDSEEDDDDIIEDNEHLYDGDEDSENLSSEGEGDDLLDEDLQDQDEEEVLGDEDNHYEMEGLDNETYEDIDKDKKTEVDSILTKRDREEQKTRQATNRHQYRISSFLLDENDENMVDEDTENNKLLEKRKANLIKKRRETIRQQNDNIKKDYDGSVPSFKDGFVNSERYFEDGDGDDDDDDDDFDIGDNGQVVNLEEPDKDKCLREYVCMSGPRNEISKQFAKFLLEFKEKDGFNPIYQESIQKMCAANKESLMINFTHLCASTVFGVWVAEIPTEMIEIFDEVALKVVLRIYPNYRNIVKSIHVRITHLPICESLRDIRQSNLNKLTKVGGVITRRSNVYPQLKHVKYDCVKCKTTLGPFSLDGTFNDSKPPIGLCPQCQSKGPFVMNSEQTVYRDFQKVTLQESPGTVPPGRLPRTKDIILMDDLIDTVRPGEEVEITGIYKHNFDLKLNYSQGFPVFSTIIEANHINKKEDLLSSFILTDEDEREIRKLSKDSNIAQKIIQSIAPSIYGHEDIKTGLALALFGGTPKDVNNKHRIRGDINVLLIGDPGVAKSQFLKYVEKTAHRAVYTTGQGASAVGLTAAVRMDPLTREWTLEGGALVLADRGVCMIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTTLTARCSVIAAANPKRGKYDSGLNLLQNVELTEPILSRFDIICVVKDTIDSFKDRELARFVVASHINSHPDNQNNPENDYLNRATKQSPISQELLRKYIIYAKRIKPRITDIDKNKISQLYTDLRRESRAGGFAMTVRHVESIVRMAEAHAKMHLRDYVTDFDVNTSIRVMLDSFINAQKNSMYKNLRTKFAPYVIFQKDINQLLTQLLQTLARDFSNYHFARSGDIPDQINIPYDDFDTKARELGISDITSFFRSNEFTSNNQFTLKKDKSTIIYYRNK", "length": 1008 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54LX5-1", "protein_name": "U1-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKITESNNNNNNNKKDNNKHWCKYCKIFIQDNISVKNHEEGWRHKNNVTRFVSTQNRDKKYQERDQKEAEREINRIKNTGARSFREKDLSRVLDEKKHQQQPQQQPQQPQQQQRIFNNNSNNNNNNNNNNNNNNNNNNNNNNNSNNNNNYHQPQYPTTTTTTTTTNTTASNKNCDNADSKFKEIQEQQRQLLSNNDYYNYYQDRQQLIYDYYQNEGNQPIPEPPLNTSLYGYTESPLLKSRLDSSTDTLSSSSSSTIISPSHQKKRKQDDTNSPIPAKISKDECVNNENKDKSNEKENELNNNNNNNKSGEGEEGEESDDNDDDEEESGSGSESESESSEVDQSESIIGQWQTVDPIESAFGSTRKDSDDEKDKKDKKNKKDNDENKRDEKDYSDVSDADSEEESVNITKRAMANHKKPITLTNVISPTIPSTSKNFESVLSFNKSGVFSLNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNEPPQPTPQITLKFNKPLKQRNTRKTNIEDKQS", "length": 514 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54M95-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLISILFFLFGILFFLKNVESASDVVCSFGYQACGNNCYSPSSGQKCYPGGVVCSFGYEACGNNCYSPSSGQKCNPGGVICSFGYQACGNSCYSPSSGQKCYPGGIICSFGYEACGRSCYSPSSGQKCYPGGVICSFGYQACGNTCYNPSAGQRCFN", "length": 158 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54N59-1", "protein_name": "G domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDLDYAIIVLRHHLESNGRFFEISKDDVKNRVTIKNKLTQEERYIDFGEIQNFIQYDEFEYNLLANGFQENLSILKNSILPLTKAPDSCSSNRGKTIGNSSLLINKVNGLIDDDKDTIYLLLIGITGVGKSTFVNMVVNYIEYSNLKDALENATLEQIYTIASKIEIQDENKTHKFSLGDVEDYKIGSSVTQYSRQYRIKLPDGKTLCLIDAPGVGDPQGTLQDNKHFENILHEISSLKKLNAICILMRPDETRATVLFKYCLNQLLLHLHSSAKDNIFFCFTHTRGTMYKPGPTRAILEDHLKKMKDQSDIEINANEKTFCFDNESFNYLAVKKYNATAGIETNFSEDDEFDFGRSWDRSSKEFKRLLEEISKVQPHDVANTICINNARTMISNLAQPMSTCISNINTNIKLMEQQSEKLRNNSIGDESLLYIPVSVVIAEKLENSLLVCTKNGCSSNTDNPCNIDVVSPKWYSSLYWCDNINKMGTCKKCSNTGVLPCLWFDHQVVTIKETPQLNQLPGTDKKTIGQRTKSEIFNERELLVTKMGERKIQFQEEYDTIKTAIVDFSVFLWHHSLIKFNRYYEDYINMQIKQLENSENSQELIQKLNEHLSEYKASVEEIKHNVQNNKASVKTQKEIFATFDKLLTLPNVGYIIQNQIKLKQSSHYKSEAVEIDLFSKMKNKTKQIIK", "length": 689 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ND5-1", "protein_name": "Multiple inositol polyphosphate phosphatase 1", "gene_name": "mipp1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MMVKIKNIIILFCIFGLLSNVSSLSSSSSSSQSSDNNGNLSPIQDYDLEFLSKHLTTKTPYWILTKNGDSNSQGDGSSGNSNSNSNSNSNSNSNSDSSNEPPEQCKLISIDFIARHGSRMPVLNSIEKLKEMTTSILEYKEQVNQGFNWIFNYSVPYPSDIAGNLILQGQYEHYNISKRLLKKYPLFFEPMKYKPQSYSITSTAISRTGISASAFSYGLLQGTGSLGVDGFQPVFIETASLDQDILLRFFATCNQYVDQLKNGTLINKDEQTKWNQMVFPNISNEISERLGLSDIWLPTSNVISDIFEACAYEISINNISDHWCSLLSKQNILDWEYSQDLSNYWLKSYGHEINYQIATPLLNDILSGFDIYINNNNNGSSSSSSSSSSNNGDNSGSNGSSGSGSSTSTSSNDNGSTNNNDNKVEPTSILRFGHAETIIPFISLLGLYKDEQKLFANSSTEQIENRKFRTSVVSPYASNIAMFLFDCGSAADGFKILVQHNELPVLVPGCDEIYCDYQQFKSIFKQGIDNFKWNSYCNINDDDSGSSGGDSGNGNGNDSHSKKSSYFLAIFIPITFLVGGTIGGIFTYFSYEKIMQVKNRKKLTQYGNDEFISSPKSKSFSFKPTKFDSRSPLIQ", "length": 635 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54NT2-1", "protein_name": "SH3 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKITTQFARTRQMLFTKTGHSEETIDVQYHYEKERTFSTEERLVKIQKNSKKLIELYKDLNKITTDIAQDACDLYDTQDPMWTPGSKLRDVATNNDKHLLDYTEQMAEPYTKPLSDYISQYKEARKRTEELTTRKVDMDRYKNEVGKLREKGAGSSSKAKLAPTEEKLRICKEGYDSLHEELLNDLPRLNEDKLIFIDYLVASLIKYQSEFHKKVSYEWSPLPSLTKHVDEYSGRDHQPVITSVERSAASINLRSDPVFKSNASIKMKPGAQDQQQYSTVDKDIHQSPNPSNLNLQKSTPNPYGGASAPPPLYGGGGSSTATALYDFTGVDSSELSFRAGDIITIHKSEGEWWEGELNGIYGFAPGSYLRMN", "length": 374 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54PW0-1", "protein_name": "Annexin I", "gene_name": "nxnB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEYKEKEINTSSPSSPSKTQISNIENDSISEKAQEPISEKVQDPISEKAQESISEKEHIESNNVSEIIDLIKSGDQHLNNNNNNNNNNNNNNNNNNNEEENQEINYNDNQLSNEEIVEDVKNSNINNNNTIEKGNSSQNNNKNNNNNYHTEKCDYCLICKCYDYGEITHNIVEDSEILKQSIRYSYVDDTSINSILAHRNYAEKEAIMKKFNDKYNKSLETELASHTHQKYRRTLISILTEPSIYDTLNIENSIKTKNSNTLLEILLTRTNEQKELIKRIYLVKYGKNIEHDIIAKFSNGANVNGNMMKQLLISMLNNDRDSNSNQSLDMNLINTDSNRLYQAGEHKKGTDHEVFIEILSKRSFSHLSELDRVYENSNPKGHSLRKAIELEFGVSKSIKQVKISLLDILLFSKEPSKYWAEQFNRALTSGSWGINEIDLTRLTITQQHQASKIKQAYISHYDNSLINEVSSKTSFRYKKIILSMLTV", "length": 487 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QB4-1", "protein_name": "Kinetochore protein Ndc80", "gene_name": "ndc80", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MHNNNLTYQQYQQQQLLIQQQQQQLLYQQQLLQQQQQQQQQQQQQKQYSHGRPSTLGLPSRKPPPMQPQPQPQIQAPIQLTFQQQQQLLQQQQYQFNNNLNTINNNNNNNITNRHSMVTPSTNLGGRSSLGPPSAMLTNNNNNNSNIRNTTFISNSGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNNNNNIHTQVQPKKSIAPSKSNTISSNTTTTTTAASSSSSSNPSITLRQETRPVNDSKFQSQCLLRLQQFLSQSEKGYPRAITKDNLMSEINGLMKFLCLHIDPHFKLPTEKPEEEIISFFKMMGYRSAGFTKRVFSQVGNAHTRGHLLGAIIWMVELIEYDQIIRQMDSHIEREILNGNTIDENGNLTTTTSATNTNEDGNFNLTTQIFSKHVFKSYEAFLKGDDGNHVDQFLEEKFNEVNELIVKECEESMERQKKIKQEIVNLTQYITNDDIDQLNFKLEQTNQEIIATHDLINDNELEDQKLDQEIDQNQTHFQELEIQQKEHQKKKQEFESRIQIQQSNSVDAKRINQETFELKEELDKVQREQSRHDQLKQEKSKEIKQSINEIEKLIQSYKEICCKASLVTNDNLIIEKYRIIFTHTLNNNNNNNNTNNSSILNISNNIINNNNNNNNNNNNNYEEGIISISDLKLVIKNLQELNLEISQNISKIKQDLLKTSNLNDIQKESISDKELELARIKQKHDKQKNILKQEKQDQTFDITQREENIEQLKSSNKKLIDDGVRELEKTIQLLESQREEHSRLKIDLKQSSEQMKLQYLKRIERFISHRQLIGSQIFDTLRQMEELSLTQKILFPPPPPPPQLSQQHQQLMQQQHQNNTIDIDE", "length": 855 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54QD2-1", "protein_name": "Probable cytochrome P450 517A1", "gene_name": "cyp517A1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIINVFLFLIILFLVKDFVKKNKKIHTKSPSGPIAFPILGNVVQIRFWELFKIQEHELFGGYSKKYNGVVRAWFGERLFFFVSNYDVVKYFQKDENFHNRPSVLVPGWRYASSNGLGVMSSSDDKWKRAKSSVSQSLRVRTTKKLMEEKAIEFIDSLEKISNNNEIFYPKGHIQGYACSMLFKYMFNQDLSVESGMSRTIGNAVEHVFGNLSKLTAFDCFEIFSPLYDWFFTRRLKGCDIVRQIISSQNENHLKSIDPSKPRDLMDDLLIEYGLNEITKEDTMQINQICFDIFGPAVGTVTITMNWVILQLCNRPELQEIAYQEIKKAVKDDEYVNLNHKQNAPYIVAFIKETMRLCSNGFGLPRTAKNDQICGDFFIPKDAIIFINYLEISQNEEIFKNAKEFNPTRYLDESLPVPNIHFGVGQRACPGRFVAIDKMFLGISNLLLKYKLKTQNGEKIDDSIQFSVSLKAKDYGIKLEKRI", "length": 483 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RM4-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKVILIYFIVIYLINISFSLKPYQQQQQLHNFNIIENNNNNNRNEKVIIAHPKIPPYWLIENEISNPNDLISFKILLKQNNLNKLNYLFEEISDPKSKIYGEFLSINEINELVKSSESDFNVVLEYLKSFNIGNIENGSEIKVFSDYILVETTIEKVSSMFNSKFSNYKNKNNGNTRNRLNGPAYLPKQLLNSIDFVTGLSEFFENNFKIENYLNNNNKNNGDSDSDSGSGSGSGSSNSYNGGLDDILITPKVLKSYYNVPNELIGKFENNSIGVIAFNDYFSMGALELFDEKFNITTTKDNLKIIGNDCLGKGCDQYESDLDIQYIRSMGENISTDFISFNDAQWILDYLHSVLLMEKPPLVQSISYGWAELLQCDVSNGCSTFGYDSKQYVDRTNSEFQKLALLGISVLVSSGDDGAPSMGGSSGNCPIDGTVYCPTGGCNHTKTMCPEFTIYNLNGGSDSGGSSDSYCFFPMGIASSGCTNILGDPSVLDSGMKIFSEKNKQCNLAIEYDRTNLPHVYSECECKDLVNVTFRNYHFTQYQFNENNGALFVAEYPSSSPFVTSVGATQFLSRDEKITTEVGCTILQGAKITTGGGFSSFQSQPKYQQYAISQFFNTSFNSLPPSFSYCPTNRGVPDISMVGHNYKIYSSDGNNKDFNQCPCKSLPVDGTSCSSPTLAGLIGLINDQLLLNGKTQLGFLNPLLYQMAIDEPRIFNDITGDSSNRCSRSYCCLYGWSTSSNTWDPVTGLGSIDFNLFLSYVLKLKGI", "length": 767 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54RX1-1", "protein_name": "Translationally-controlled tumor protein homolog 2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLYKDLIGNSHDDLLTDRYEIKVGDVTFEVKTKMITKDLNVVVNNNSLGGSISTTVDNNNSITLSTNLEDEFENVEAAGTFQINNLVEQLRLVETSFDKKSYLAYMKLYIKDLINHIKQQPSNSDNEKIEHIQKGIQSFVKTMMDGENFKKYSFFTGSSMDANGLVALMYYKDDDPTTPTFVFIKYGLLQVDV", "length": 194 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S19-1", "protein_name": "PHD zinc finger-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKNCIVCSKVGQYPLNLVKCYECKSYYHKFCLQSTKIPRGEWYCSSCEIERKNKKNKKRKLDGAGKKNKKNNKDDDDDNDDDDDEGENDEDDEDHQDEDSGEEEDEEEDEEEEDDDDEEEEEGNEKNKIKKRKRIPINQSPSIKKRTKDIDSEEEEEEEEEEEENDSEEERRIQKRKNKIKQQQQLKMKEKKQREKLRKRRRRTRSSRKDDNDQDDDDDDDDNNSNNSDDNDQDENKNKQKRKRRKDKKKDDDDDDDQEEEEEEEEEIVTGKRKRRSLNKVQPNQHLNNENEEDNEEEEEEEEEEEEEEETDSSEEFLENLVCSSCNTGKDEDKILLCDTDNCSRGYHMYCLRYPITSVPKGDWICDFCRFGDISADLHSADDDEDGAINSQKEIEKQKQKQKEKEKEREREREREKEKEKERERERERREKEKKDALRSSFSNIPIPKINNINGSNGSNSNNNNNSNNNGSGVNRQSPPKVISKKSPQQSPKPLKSPTSSSSSTTSSPPPLHQQSKVTSKISPNSQQSIPTINSNINKSPPSQSKNSPPLKPLTPDLKKQIPITNITTSSTTTTATTTTTTTTTANTSNVATTTTLLKPSSQKKPTILSDKKQLNTSGTNLPMNGKKKEDLESSASHSILDMIPPNNKLFNNSIQSAPISWDLSGSQHKLSTSSSSLPNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIKLQQQLQQQQQQLHQQLQQQQLQQQQQQLHQQLQQQKLKQKQIEEEQEKEREQKRLENEQKLLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQEFIDQKELEDKLLSQFDNQNLKSPLSLTSTTSSTLSHLPQSTFESSTILSNKTIKQKWKSRILFETDQICQCEIIQIYGMDFKVNPFQNNITSKTLELSFNQVSFDNLPKPIRDEFITKSSTPSTCLDIGAIDLPNSALLIFLPEIPNQSSLYHLIIHFIENRVAGFIDLSNDLSLYIYPYQTSIISLDLIGILIDKKSLSPPSLILNQQQKQQKQQQQEQEQQNQSFDIKNICYIGINHISMNKILTSQGKNYFSFSNFNELTLSSDIKNFDLVVVDNKMVNNQTINKEINNLMQLQPTTNNNNNNNDINNNHDTLLLVIKDVEFSKWLVSQKKFPNSLEIQKIFQQQILFKQSRCIFLLDNSIIIENESSYFVEFISSFGKFKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNDWTIKISSTIFDELLPFGHQSNVKKKIDEIKRGINQQLIVSYDFSPMVPKQSSDFLLLALRIAHSKKYKQVFLITSNKIIQNQSKRYSNLNLNCLSLEGGIDYIKNINNKFSLKI", "length": 1361 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54S56-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDLFSHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVGECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54SW0-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "NQAKSSTIQQPTQTQQSNINNNTAKPRAAPPLKLVITNSNPSLKQKPQSQQTIPQQSVPQQSIPQQTIQQSVPQQQPNQSQQVNVNRTINPQQQQQQQQQQQQQQQQQNINRTAPLPQQSNYKPQPGVIYQQQQQTQYRVGTPLTINRSPMVGMVSKQPMSSSQQQSQSQQNIQRVPCQGKCCAGLAVKPLVPINSITAKPPPYSTMGPRGPISGGFVRTSPTGAIIGPSPQQQTMSRAMVNSMPIQPQIQIKPKPSPLNNGGIPITTTTTTTTNPLNKSSPSTLTQSSNTLASSNNNITTSNSLSSSTSSLPTTSTTPTTKPKSKPRSKSNSNSQTSSSTTSSSSTPSTPTTNSTKNKENTTPNKGDDSGTDNEKSSLSNSSKLLPTAYTMDQVLPFNPNQMFLGPEDKYIKSATRTYHKIPTNPSVMSNNRGAEIPSSLEYILDIPIIHDEPSSKNNPTWGRLILDALRRLVANKKTTRITERLKLDNMYKDMDSRSNQDKLDWKNGLVNEAQLNYLLSFLSNTIPFPDTPEKNKNKYLSSSDSQIINSNDQSNSLNSNNSSNNSTTNNNNSSTTTNSTNNIINNNNNNNTSSVPNSTNNSNNSSPEQQDVIDMELKLEPDNSMNFPIEINMDSLGSYIDDSFTFDNSSYDDTATISSDDKNLPITTVMPPTTSTTSTPQTITNTIPTTTPTIISPPTITTTTTTTKTTSPPTITTTTSPPTITTTTSPPTITTTTTTINSITPTTSTSSTINSNTTPMLDIVIDPVISLELLDENHQQQQNKEVKEENVHSKQQPPQQQQQQQQQQQQQQQQQQQQQQQQQQQQEDFMIQVQTSDLETQTQIQQDKEEIQVKPIVDSKKSGNSPTQIQQQQQHQQQQHHHQHNTLTQGFEFGMMMDIMNSPSSTSSMKRKRDDVDQPINQINNSSMVVQQNNDFFSDFNTIEAPFSSSHHSSQLSFQTPFSPDIVIDSDFQNKKRIVS", "length": 981 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54T36-1", "protein_name": "Probable polyketide synthase 19", "gene_name": "pks19", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFGNKEIAIVGIGFRIPQGKESINNGSVSHLWNNLKNGFSGIVETSERWSDNINLLGEVNNKFGGLLPLKEWSDFDPVHFAINPSEVPLMDPQTRLLLKCTWEALEDAFIDPIDIRGSNTSCFIGCSTLDYSTTNRDFNETSENYFASNVLHTISNRLSFSYDIRGPSMTIDTACSSSLNSITMGFQSIQNGTSNLSIVGGASLLLDPYVSKSFSFLNMLSKKGKCKPFDSEADGYIRAESCGIVILKPLSDAIRDGNNIYCVINSFSSNVDGGGLNDKSNFYSPSKQSQSDNIKLALKSANMKASDISFVECHGTGTPTGDPIEVEGVSMALNSSTTSTPSKPLLIGSLKSNIGHCEAASGVASLIKCCLMFKNKHYAPNVNFDQPNPKINFKDWNIKVVTEAIPFTNINEKPVSMVINNFGVTGSNCCLILSQFIEHSISLNGNNPSYPIESQQQIFLIPFSANSVKSLKNYEDLIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNITIKRNQPLIVIVFGGQGSQWNKMAQQLYECEPIFRSSMDKFNKELSKYYGYSVLDKLRSIKDDDIISIHQPIIAQPSILMLQISLFELYKHWGINVSFIVGHSLGEIATSYCSGMVDFQTVCKLIYHRSISQNNTNGCGKMLSVNISHSEFIELYSNKYPTIEVACYNSPTSIVIAGNENILKEISLDLKENNIFCAFLGSLSSFHTSSQNSTKNEILPLEIPSRQSTIPTFSTVTTNLFNHETTPFNSSYVYENIIQPVRFSQTISNLYQHIENNKLGNELIFIEVSPHPSLSFYLKQMIPKSSSYFNSVSVLTSTNKKNSNDLDEIHSTISQIYCLGYDINFKCQFNHNDDDVNSIRNNSTIILPNYQFDEQYYWKVDINFEQYRLNGPNVFNNLGKSMINYSSNNKSYESIIDINRNPFKYLKDHIVKGKYYFPGIGYADNIMKLYPNKDIVINNLEFLAPFVLKENVKHILQTNVYQLGNTDYRVTFNIKDNKANQWVQTCTGNFQLISLKDNNNNNNNNHSSKYNINQLLSECNFTTLSKQEVYKYSKLRSGITHLGTFQGIEEFHFGNDLTIARIQINYENFDINGKPVYQTFDKSFFNIALLDNCIQAITGFITNSSQFVFERLEGLKVYSENIPTDKLKYKNIYCQAKFISLEADSYKSSVLVLLEDGTKLLEIEHISFRSTLPLIDELLLNNPTNELFTNNLQCKDSLVNILSIDNNETSSSSGSSNTVTEIIKQTIKPIINEKIVFRILQSFSDSELSKQIIEALNQIFDNSLQEIDIEFTIIDNSNDKLPTLHDSSLIFKNDITQLKPSYYDIIINNNNDETIIKPIFNILSSNGLLLLIIEDDIGIRFNINNLIGVGFNENKIQKSNKVIQSQKSTILSNELTVVPNNKNDNIIIYCEKHSKYTNEFKKLISNNHTNRKQTTISNINEFNQLLPSITNDSIIYFIKSMEQLEMNNFKQITMEYIEINQQLLKHSLTCKHVLITIDSQIKNYLSSSIIGASRYFNEFPSLNLYSIDFDNQLSISSLLNKIINQLIENSNNHIQREYIIRNNSIYYEILKNEKNIKSNFNSNSFEDNDFMTLLDSTNLEYKLASKPKKLKKNEIEVKVLATGINYKDYLIYRGLVVIDENVSISKNPLGLEFSGIITRISDENKNCEFKVGDNVFGVSHDATASHVITDVLYVSHKPNNISHIEAASLPIIFSTCLHGMFNIGNFNIDDDEVILIHSATGGIGLATLEILKWKGHKSPIFVTVGSKDKEQYLIDNYGSFITGIYSSRNKNYVNEIKSKLNQLYGTTGKFNGVDLIINTLPNEFTHSNFLCLKERGKIIDLSITHLNNNEFLNFNNFKFNKSYHNIEFMHINKRVVSRLLKSISNALNENKVKLIPITTFQIENVKEAIEYINQRKHIGKIVLDHSCSNGSIGSDGLLNQLIESDNNEKNHTILKYDFKIDTKNIIGKNIIITGQSGIILEILKWLIKYSPPTESFENIIILSKSSLKWELELLINKTISRKDNNTKFHFKIVDVGDSIEMRKSINQILLENPNIDNIDSIFHYAFTQVTKEVEEIDIESLDISHNAKTMGAINLHEISIEKSWKLKQFVMASSIASLFGSFNQCTYVSANLVLDSLSRYRKSIGLPSTCTNWGTIKSSGFVSRNDSVSKMLDDQGFIPIPTNIILGSLDLQLQNSNKYSNLIVSKFNYDSIKKFASETSTFQRLDFILNSIKEKDNDNNGGENISISESIQMKFLNKISELLSIEQSKINTDIRLGEYGADSLTSVQLKNFIDKENKSNVITLQQLQNNTIGVNIQIILEQIKKLDSNETKGKSKKIIKKDSAPSLEYWRNEMKLDESIQAIKMNPIDFRNDSKVFLTGATGFLGVHLLSNLIKSPNCSVVYCLIRNKKSEPNPINAIINNLKHHKLYHFHNEFELSKVKVIVGNLASPLLGLSKLDFGFVSNQINLIINSGADINLASNYEESKVVNIGGLIELIKLSTTGDYQKPIVGFSSISVFFESPNCKEFDEETVIPTIENINNLPGGYMKSKVVVENLFREAAKRGIPSMLIRLPIIFSHEETGIGHDSDFFQLIIQSCYAVKKYPNIDKNILTSPIGWIGLNTIKMIGNEKCWNKSSSNQLNIYSLNSEVSSIKSSFSFLEKQYGCEMVEYEQWKNIINQSKILSCIKFKTFHSLDRLNGVYNLGHGFGVSKKTKELLQSMNSYEGGMVNEKIIQNHINYIFKN", "length": 2778 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TD0-1", "protein_name": "Peptidase S8 and S53 domain-containing protein", "gene_name": "V4-7", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISKTSLLLLLLSIVALASAISVQRVPIADVTSAPAHFVQNKLAKSYELVQFKILLKQRNLDILEEKFWDVSSPKSENYGKFLSKEEIDSIVAPSPKDVKVVVNWLIDNGLSKNEMIVHSDFIQVRTNVGKASTLFETSFAHYSSSRTALKRIRVVGQASMPMHVLAKVDLVLGLSDFIEDNKMSESMRATKKQVQGSTVSITPAVIKQYYGIPTGQIGVESENFQSIAAFSDFYSSGALQFFDQKFGIDSSTVRVKNVGQNCIAQNCDQMESDLDVQYMTAIGNNITTLFLSSGNGEWIIDWATAIQQYNPIPKIASISYGWAEVEQCEITNSCSTLGIDSVVYVARSNVELQKVGLRGVSVFVSSGDDGAPSFGAASGNCPIDGTKQYCPLGGCNHKSSQCPMITIMESNGTQCFFPMGSESNTCQSMLQNQNIVNGINEFVSSNSKCQVALEQDTQQNYHIYSSCTCDKLKPYSDSDAGFKIVGYSYDQDAGTLFQPDYPASSPFITSVGATQITDVTKPEIVCSVATGAIITGGGGVAITQAQPSYQADAVATYIKSGTLPPSYSYNATNRFYPDLTLVGHAYEIAVPNTLTSNTCPCALESVDGTSCSSPTLAGMISLINDKLIGAGKPTLGFLNPLLYQAAKEQPNVFNDITTGANNCNRAYCCQYGYTATTGYDAASGLGSINFKNFEQYVLSLN", "length": 702 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54TX3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLIYAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYFKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKAHTSTLNDMCRHWGVFRVKFYQNHPKINELPDCIRNDNDEPLKLKEIYELMIKDRHPTPRRTEWQKLWAVRYNTAIPKVFININSISHQKGRNTLFRFFSRSLPGINHERDTRCKICGHLFRDPYSHLFTLCQDILDIEKTIISTVNKLSFIKIHRWSMDTLDISKYNRTERIFPNLIGIIAHQLWKIICHKLFNTDESKPEPKFEQKVIETELLNLIETEKFITLKKIKHDEAILKNTNQDLHKYKFNKAWQTPAAPNPLPI", "length": 1097 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54U20-1", "protein_name": "Peptidase S54 rhomboid domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIYGDTREFRNIHFHLNNIRIVGAIFGQDGFIHKKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLSIYHIVYNMITFLDLAKLERLTFGTLKYFYLLFLFGIITNLICLFIYFIGRNNVCHLGFSGVLFALIYIESNSSGRDVFLFNAVKIPSKLYPWAMLILAHVFVPRSSFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRRSYNTDRKSLDGLFFELKNLFNPQQQQQRQQQRQQQQPQSPQPQQPQQPQQQPQQQPQQQPQQHQRDNFRNDNNDNSNNYDEYDFSK", "length": 343 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VC1-1", "protein_name": "ABC transporter C family member 15", "gene_name": "abcC15", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKKIKNIINKIINFFSTIYILCKIYLYYNIKNRYEAYNILSVYGDDDFFNKPCPEDSSNWKDKLTFKWVERIIFVGFFRAPLNLNDISDLPSSLKVENTAPLLKDIIFNDSTIPLIKHIYSKFLPRNYIATGLFVFVSVFSFITPLILKNFLSYVEKIDEQKHIYIGIIQCFLLFLSSFINMASQQYSYWFGFKTSLEVKGALETIIFEKMTKLSNLSKKNYNIGSMLNLMSVDTDFFQYFFCHYYIEIFLFPIQILSLLGFLIYVIGIAGFVGFLVMLITIPLSSFLGTQISKNLSTSMGYADTRISLTGELINGIKFLKQYAWEKMFCERIEEQRKLQLKYLYIRIIYWVLVQIVTQASSGLVLVSTFTTYTLLGYEVSLEIAFTSITILQNLRRPIESLPDCLHKFISLIASAKRIETFLQSSELQNQPFIHNQSGLNDILIRNINFNWNEHNLKLKNNKNNQNNNQNKRSIILSSGEQFEITNDFTFDGIDIQDDNYDYEKEYKINYNNNEEEENFMTDCLLKIKPLIKDRRLQQQQADYQDLLSINLPPPPSENVDFKAPKGLLTIISGGVRSGKTSLASGLLGEICKAVDKSSPDSVNSILSTIQQPFLQSTSFRENILFGKPMNMERYIKVIEACCLAPDLLAMGEGKDLTEIGERGINLSNGLKHRIQLARALYADSDCYILDEILSSVDPEIANYIFQHCIKGMMKGKTVILVTHQIQFISSADHVVVVDNGVLIQGTYLELLRMGIDFEMILKEKENRIEKQIVQLQEDEDYYEEVEILDFTMNNNNNNNNNNNNNNSNFNGNNKLKRSSISLPKGISIESIISKDFDQTTIEKAKLFVQEDRNKGDPGWIIYKKYIRMGSSISFFIFTCIIYLTSQIILLLSDYWLQSWASHDRLNVSEPTDVHYLLIYLAYIGGFVFTLGVRYLLIAKITFGSAETLHRSLLKSIIRAPLTFFEQNPVGRILNRFGKDISDIDILLLDCFSDVLYCGACLVTSIGIIIYISPYIAIPFVILIAINYIFQLFYNYSVLELKRIQSISRSPVYSLLSEVYNGLTTIRSFGQQERFFNMMKDNININLRVFFYNFAVSRWIGIRVEFLSAIVVLMSALFSIFNDNPGLSALGVTTALGITFNLNWFMRQFGELESRINSVERVQSYISIPKEKETNEDEFIQTGFIWPSRGEIEFKNVEIRYRPNSIATLRNFSMKINAQERIGIIGRSGSGKSTIGMSLFRMIECSSGSILIDGDDISQIDLKRLRSSIGIVPQDPFIFSGSIRLNLDPFDQFTDNEIWEALSKVKLKKMVSTMPMKLESLVQGGDGLTIGNKQLLCLCRAILRNSKIVLFDEATNSIDFQTTRLIKQTIEENFKDCTILTIAHNIDTILDSDKIAIIDEGELIEFDTPLNLIKDSTSRFSKLIKLNNNQKNKLN", "length": 1436 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54VG9-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKSIIILSFILSIISFSNGTIVKCTSASCSSLNNNCVNHYCNPRAGCYGIDKCVRIDACHIVSCDLNNGSCINTKANCDDGDPCTDDFCHNGYGCFSLPNNKHPSVICQKNCNDNNPCTDDFCDFTNTCQHTLKNCEDNDFCTIDSCGPNGCVHTNISCDDNDPCTSDFCSIMYGCYHEQIECSIKVPCSTDIECNRYNLCETYTCDLISNICKYSTKFCNGFPCINNECMTGVIYN", "length": 237 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WA9-1", "protein_name": "Short-chain dehydrogenase/reductase family protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKKNIFFITGCSGIGFGGLMVKKLLSRGDYVAATSRNKNKLIQDIGSNENDQFLPIEMNLADESNVKEAIEKCIEKFGRIDILISNAAMGILAPLEETTDKDARTLFDINFFGPLNLIRNSLPYLRNNQFLKNNNDNNNSKLNGPRIIIIDSICGYSSLFNGCSIYCSSKFALHAISETMSIELKPFNIHCCNIAPGYFQTSFLSSCLIPDTRIAEYKDTHSFLDEIVKLNGSRFLGDLSKAVDVIIEISLSYSPPNHVLVGSDAFELFDLKYKKLTNDILINKEICSNTDKN", "length": 295 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WC3-1", "protein_name": "Cln5-like protein 2", "gene_name": "cln5lb", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNKLIFIIICLGIVDKTISSDFKSYNDGIYSFTYDNICSFKNSIRDQDVYELYYVQAPLLYATYGNLLEKINAYHSGIVLYNKNNGPNITIDYYAIPSFEATLFPKSIIKDSQGNYNITWDTHGLIEVTNYINETYWNKRQLIMYDLSGIQIKQYLSWAPIYNKTHTFYNLFNIESDLSISNSSKIYKNSSTCDDFVWASFDVLYKLGGTIASVQSDPQRDDIKLFISSGEPKIVDYNDSIKRNQIASFFNELKDFANLGKNKTALEIFNELITFFNGYFYCYIDGEYYEMKLSKQNPISFTYLPSPIPIGKRNFNEIKKLGFCK", "length": 325 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WW7-1", "protein_name": "Probable serine/threonine-protein kinase DDB_G0279405", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGCIFTKPSPEQQKFDGEDYECENKKNLNLISYIRNLLFGNNSHQQLYNEIIPTTTSTTSTTTNSVYQNIGLDGYNNNNNNNNNNNNNNNIMNNYGYDDYGYSYEEDEDYYDEMPIPTIVAQPQPQPQPQPQPQPQPQQPIRIVSQNQQIPTTPPQQISQFNITGNKSPSSIGSRHRSKPKETLRAHKKRHKDGHKMVNEYVFVRKLGKGTFGKVKLAYHHDTHHLYAIKIFNKIRLKKQTMGIGRPNAFDDVLKEIAIMKKMNHINVVKLYEVINDPQEEYIYIVMEYIEGGSIMSANETSEDLARKYFRDIVFGLEYLHEQKVIHKDLKPENLLVNSEGVVKITDFGVSHIFDDDDVVRCSRGSPAFLAPELCRNESQPISGKGVDVWALGVSLYCLIFARTPFISKTNSLLDIYDQIVNHEPTYPREISNDLMDLFKRLLDKNPLTRIQIAEIKSHKWTTISGTWPMNELDHLILSVTDQEMIDAISTDHTIKPSDNTTTDEDDSDLSSSSGGESSGIIGSSNESKSMYNNVNSKQKIQNQNQNQNQNQNQNQNQNQNQNHNQNQNQNQNQNNNNNSLIEKSNISIPASSSSISNNDSCYENRNVYIKDEEMNMICNDSVIMDPIKELNKIDGLNYGCDFQIGKEYSDFQYNSGHFIYDLVDENESQISRESANDYYLPFKTNKYLNNKSIV", "length": 695 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54WX7-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MARTDNVQLPLENTSIEFEEEIIDSQNDISQQKNYQDFLKNIPTDLNERKEYISSLKKLIKLEKRNHQQIQGEQPNQQEGLNSDRPPPNHHGDHHHSLPPPNHHGDHHHHSQPPPNHHGDHHHHSPPPPHHHGGHHHCPPPHHGGHHHCPPPPPHHHGGHHHHCPPPPHHHGGHHHHCPPPPPPHHHSHHHHCPPPPPPHHHGGHHHHTPPHPPPHHHGGHHHHCPPSPHHHGGHHHHSPPPPPPHHHGGHHHHCPPPPHDGNEYLPQSQTNIEQCICRLNRKKELLIAKIQSIDSIIYNLECLNKQNYQNNYLPSIQLQPTQQPQQPQQTSIKPQQMCQQFFIPQTPNFPQMNNSAPLMYVSQIPVQQSFNNN", "length": 374 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54Y59-1", "protein_name": "Small GTPase", "gene_name": "rsmH", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNIFLSKSKDVYRVTSHKKEVKICVLGDANVGKTNFINQFTKSSFNEEYTPTIESRQNKLYKFNRKQFQIQIYDTAGSKELNLFVSDSISQCEGFIIVFSLNDRNSILKIQHYKTLIKNIFKDVEMPIVLVGTKMDLKKEITISKNECKITSVNNNIPNLFYTSAKNKESIIPVFKKLVDLIISKEKKVKKETESNNIKINNQNKIKKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHVFKTRSNSTLRMKKYLKLF", "length": 272 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YJ4-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKKVYQDEEFSFFEIGGKKIADLYVRDIITEIRKRGKEITGLGLKSKYELLCILVNRMKEENPSLNIPPKKRVLDFGSLSSTTSNGILQDSNKFFKKDNTHQHQQQQQQQQQQQQQQQQQQQQQQQQHSNNSDDDDDTHNYNDDSDESDDEYIITEEEEIELHKNLNLGDDENLLTLEIKLLESQLENKKFRKSLLLKDKKIKHLENIIQQQQQQLLEQQHQQQQQQQQQQQQQQQQQQRQEEEQQKEQQQKEEQEQEQSSLKNNLKFKDGANLFSIESISNLYNKILNEFNFKKIITEFGDSSLKIHEEFVKFIILKSINLNHNNNKNNNKNNNNNNNNNNNNNNNNNNNNNNNNNNNSSNNLPNGDVNKNNNNNGEIIELVPPPKIDEFWKLMVLDTVGYQQFSNILGAKVNYDTDINPTRKGYQRLKDMKNLYFPPPPSTTELTTDEIWPNHYLLPIQPSPQKQHIQKQQLPSSSSSSSSSSSSSSSSQQHQQHQPQHKQQHQLQQIQEQQPQQQQHQQQQHQQPLQQQIQQQQQQQQQHQPQQQHQPQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQKKQQQQHQQQKNKENNKENNKENNKQNNKENNKLNDNNLNIEVHEDEGNRIINFLISPDTPLRNLFVAYAKEIGENFNSFKFYFGNELLCQNETPSQLLMRNGTKIQAFYLNKKEIKK", "length": 702 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54YV1-1", "protein_name": "Rho GTPase-activating protein gacII", "gene_name": "gacII", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MVRKLFNTSHKKELILDVDTTIVKIGTPKNVVLLTKWLDANGAIKEEGVFRVNGNTTTMEQIKKNFSQGKDDLTKYTSADIHSMAGCLKFILRELPEPIFTWDFYPIFIKIQCLQDESRKLFFLKMLIHGLPYTSRTLVFQLFGFLSKFSVHQDQNKMTPKNLATVFAPNVLRPKKEEDNFQLMNNQDSIGVIETLIEEFQYISNIQKNTLNSQEIKVKSVLPFDETTNAITQQSLVEDYLIAKANTPQESSSFKKNLPFKKGDIIKLLYIKNDGNFIGEINGITGNLSQTYVDIIDISELAEAFTLTPPPIPTLPIASTILHTPPTSSSSSSSSSSSSILLTDNQPKLCSSTPRINNSPSSFSPSLSSTTPQLLVQQSPRQSPRQIPSISLIVEPNNTNQPSFGHGTLQRTSTGYFSSKPLSISQPINMSKPTNMSPPTHHAMSMHNLPPSNTTRENHLPPLPTKPPPLTIPSSSSLPTTPIKQQPQQPIQQPLTPQNHHHHHHHNNLSSSVNTANTGNCANILSPNSDRYLSSRSQSSVHLSGSSSSSSSSSSSSSSSSSSSSSTSNRKFDFSLKSKSSKNSPSKNLPPQPTTTSTLTPPPPPTITTTTTTTTTTTTTTIATTPPPPSKPLPNIPVKDQQFNTLKRSTIEIPPPTITSTNINNNNNTINPRTLNYSFSSFSITYNNSQLGGQLSQEEPPGGVKSQSSYLDNNNLPSRNTNIPNLPPRPPPLNIPQQQQQYKPLPSPPQLQSPQSSLNQSLQIPLQQQQQVQQQKLTTHYILPPQNTNLSGKNLQRSSTSMLLNKLPPPPFSFNKN", "length": 817 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA1-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNLNITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSGSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZA6-1", "protein_name": "Alpha/beta hydrolase fold-1 domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKINQTPKKHKIIEPNRKGYSIVGKNTGKPNKIYFETFGNGPKKILFITGFLSSSKGWCKQIDYFTNKKDQYEICVFDNRGIGKSNIDSKYSYNFSTKSMAMDAIDLLEDTLKWDKVHICGLSMGGMASIHLSSIIPEKVQSLVIACVPNGYFLPFFSMGVFNYIRAFFFTFNEKKKARIFQSLMYSDNYLDEKTNGSDETRSEQMFKKNSTGFKDDGPSFLTILGHQIGYITNRFSKKSLEVIKKYSIPTIVINSKKDSLVTIDITKKQIVNPLKPLNFHVIEGGHLSQLENPTFFNKLVENHVDKHSNWDHSTFFQVEKQQFQRQSFMTQNILYSKNYLSSNTLSSSFLNCNTLRSFFNKIKV", "length": 366 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q54ZT3-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551H6-1", "protein_name": "t-SNARE coiled-coil homology domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MATRDITSSYILSRTECKNRAKIINSAININIKKSGSGYKRLEEENYQDIDIDNNNNNNNINNNNINNNDNDNDTTNNIKNSNNNNDIQLNILDTEINIEQLNSLPPWILKLNDIDENIKKIISLIEKFKKYLKEDIDKILAEDIEMESRIDCERSIELLTMETIRLFHKTFDMIKYLNKSNNSSQGENKMKKNTQRMKSAKLKALLITFKHIQRSYLALLKKVSSLQRSLSSSFLYRSGEYDVNNDNEDYGENSSISNSHYLQHHHNNNHHHEDDHDHEEDHEEIMDELNEMATTLIERQRVSQLIKETSHLIQDVGSMCVKKDSIFDRIDYNLAEGEELEFNGTILICDGITNGYERPENEKRKKLLLIFAVLIIVILFIFILKYVIEI", "length": 391 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q551V5-1", "protein_name": "EGF-like domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKYLFRFFIFLFCITRINSQTGCFFRETGADYNIDSVFSVFYVDNLFNIFGMTFYMKTCTYVTCDPWRQTMICGNYNSTTFQLGPYQSQKVTLNKNGISIEYLSDKTPPNHPCPTITTTVKFICDKSVLSVPKSDYDYVGTCGVQIKLFAIDYCQTCSKCIASHGSCNSTSGWCTCDSYTMGLNCDQLKASISSVVAPTIDGGSVIISGDFSSIYSLGPSLVITIGSLVCSQVSFAASTTQISCTIGAGQGYQNLTISDGSGSTLQYKQFYYHYPCQEDCTPYGTCNDVIGKCTCNYKYSIGADCKTLNLQLTSVKPTLLDGGQAYLVGDFSNVTGLTLSVKIGIKECTDVNFNETTLQCTIGSGEGIKDIIITSDLLTYSKIGAYEYQYYTCPLGCLHGTCNKYNGLCVCNNGTYGDQCQYIECPLDCSTPNGVCDKDTGICDCDDKYSGEGCDFIKCPLDCSTPNGVCDGKTGICNCDEKHSGDSCQFLQCPLNCSNPNGICNRNTGICSCDSKYSGEGCDFIKCPTDCSTPNGTCDGKTGTCKCNNPYTGENCDEIAKCKQECSLKHGTCDSHTLDCICDTQTKGLSCEESRLLIESADPTSLDGGTTTITGYFGTTTSLLSIKIGDSQCTNIKVESDTKLKCDIGPGEGTHNVTVTDDDLSFTGVGMFQYVGQINKISKISGGAIAGIAAGCVVGVSVLGAGGYYQYRKNKKIELFMS", "length": 722 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q554Y8-1", "protein_name": "ADP-ribosylation factor-related", "gene_name": "arrB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGMGFSFIEKKDFKRFLILGIDNSGKKKIMYRLKFNKDIPTRPEKGFFVETFERRFKYNNEDVCGQNMIRPLWPNYYTDETNGLIFVVDSSDQERIEEVRLEIKKLDENIKIFKNHPFLIFANKQDLKNSLSIEQLIDKLELNKLSLNRKWHIQSSNAITGDGLEFGLNWLFSSSHNFT", "length": 179 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555E8-1", "protein_name": "Putative fatty acid elongase DDB_G0274669", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METVQSIITEWTDPKSWEKLVQHSFKDSNWKELIDPVNYKFNFGVTPFSQFQIIPIVLVIYLVTIFSIKFLMKNRKPFSLKFISILHNAILCIWSLIMCVGVLYEIIKRVSNEGPLFTVCEDPNGGFDKGVTYYWSYIFYISKFYELLDTVIIVLKKKPLIFLHVYHHCKTVWWKKYITMIQILQFVCLGIAGVLHVYTINTIGCFTHYPAFAAAYSINFSFLFLFSKFFVKSYTPKNSNSNTNIKSKKID", "length": 251 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q555Q5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MRSIRIKKINFHIKQGEEQLKQELNNYCEETSLKYISARIKKRHNDFTINAVKDAQGRTINKQELIEEEYVKYYSNLYDYKEDDAPSHYEMLENWTVTRDSTWDNLENEFTTQEILEVIKQLNPHKSPGPDGIPNLFYITHKEKLAPILASAFNDTLRNPHLISKNYKEGLIITIPKKGDPELIKNRRPITLANCIYKIHSKLINNRIIPILTKVINHNQKGFVPGRFIIDNIISMNELINYCNDKRINGIITLYDFEKAFDSISHGSILRSLQHINIPTNIINLIMNLLTKSEARIEINGRTTIPFEIKRGVKQGDPLSPTLFVLVIEALARKILQDDRITGLPLNNSDHREKFQSFADDSASMVPDSQQLELVLQHFNSFCKATSSKLNIDKSSSILIGNPDNTNQRIPISTNPERYLGYFFTGKGITRKIPEILNTIRSSLVLWKTTDSTIKTKTNILKAFALSKLTYYSYVENFKEEELNQINKLVEWFLSAPNTKMLVDFKITPKLSPTAKKDQEVNADYANHRFHKEYFEWNYKAIDYDLTRSFAYRNLMALILHNIWIWICNQIYSEDPLTDESLSYSSLLKKWHKLATLEYIKKAKDLKNLSAKDHNNFKDPKILLTSTIKLRKTTANYYCIPESSLPNIISFDQFI", "length": 655 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556H5-1", "protein_name": "Cofilin-3", "gene_name": "cofD-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTTPKPTIAKISPECQTHFQDIKFRNKYQGILLKVNEESNMVVDKTLVAEGEFSELAQSLPTDQCRIIIYRYKSGEGSKLFFIYWGPDSAPQQDKLIYGNAKVTLAITLKGIDHKISASNLKEISEQVFIDRITPKTA", "length": 138 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556J5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWNHNLCHAINLDRQFDHINNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNKNNNNNSYDYSFSVHSSQQYSRHYPNSCNNEQTKPKDYYDHASRSQHDYHANGSNNGNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNNNNCDSNYNSNNNNSNNISIANIKYQQDQHYQHSDTYTSHQYNSFNDNNNNNNNNNNNNNNNNNINNDNDNNGYNQYDESEEDEEEQDDYDEFDIQDSASSYNDNCGVLNSNTYIYDYQSPQQPLYSNEYQNNNHQPQQTDSYNYNNTNNDNNSYNINNNNNNNSYNNNNNYNNSNNNNNIGNIDSNTNNNNYNYNYSNNGDVYNGYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNMNNMNNMNNNIITSNREQFYSNNNHNNINQYQYQSQQQQTQQQQQQTQQQQQQTQQQQQTQQQQTQQQQQYLTQYYQQELYSQSYKCRPYYQNSFVISKC", "length": 480 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556P1-1", "protein_name": "CWH43-like N-terminal domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MISSSLKPSVLLWILAILIPSTLITTYTLTVLLFHGIRRTVPYISDTIDFSPESCIGTFFISISAFLVFIVVFVKHFLLQNNINQNFNIDIILNENENEKKKNRAKMLNRISTFLGLICGVCIHGVSSFQYHNTGLVHSIFAASFFFTGFIYIFTQTYLDHKFSKLPKRILILRRVISLTTSVFIGYIILQFFIDNLAPILKIISALSIFFYLISFFYEFSKITINFQINTISQIEHQKEYNENSALLISQ", "length": 251 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556R5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFNFERIDHGSGKGTGIAIENRDTRKGHISINFKDDDGRILSIKYNSFNSINILLINAPATISERNTFIINSKSLFKKYNSINHQIIAGDFNNNHDCNSFFGTELRKIIDQDMLLDTGIEENTPTFPRSMKRLDRIYCHPTLLNQNSKLVVHNTVFNKSDHFPITITIQTNRETTTTTTTTKLERLPWTLCKEILNNKHIHDGLSELISKNKDKIKSVEEWTKFKNNVIRDYLKKEQNKIKKEKNKRKYVIHKLLGNSDIIPKMRKELNEEISRILEEERKVKAWDIKLKLHLHQETPSKYLTSILKSRAKDKSIFQIKDKDNKTISDKENIAKRFVEFYQDQYEEKEDNEETHKKLLEKWEVDVDLIKKLEIDRPIRIHEVTKAIKTSSIHKSPGLDGINALFYKYHINSIARILTIAFNDLLTNKKEIPTKFKEGVITTIFKKGDELNISNRRPITLLNTDYKILSKILNSRLLDITSKIINKFQNGFVPNRFIQDNIQIMKEVIEISNKRKNNTLITFYDFNKAFDSISHKSITRTLEHIGIPPKFTAILLNLLKDTKNKIKINDFLVNGITIRTGTKQGDPISPTIFALVLEPLLIDIINDNTIKGFTLPNSKSLKLTAFADDIATFTNSTEELMKINTKIQKYCSATSSSLNKEKTVMIAIGDKPHDLPFQESTVPERYLGLNFTKTGLNSKYNTLIQEMKNNLIKWKSQAITMKAKMTILKTYVLSKLTYHQYMDNLNEEQIEEINNMTRWFLFSSVKNTYTEERKYKTMMKIDRAYADWKEGGIKLWDIELRHIAFKIWYMNRLLHNNYNNNNNTLQEWYMEQLSRKKPTLQPSTICADTGVYSESNFTKTIQR", "length": 861 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q556X2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557C9-1", "protein_name": "Homeobox protein 5", "gene_name": "hbx5-2", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "METIVNNQNNGQQNTVPTQSFSSSVYMNYDFFDSQQLQQPQHQPQHYQQQDSFVSPNLDNNNPQIHVQSNNYNQNGFVGYNNSNNNNNNNQHMNNQYSNSFHNNNSSGFMAFQNNSSNFNNQNNNNSNNNNNNNNINSYDYNNSNNNNYNNNNNTHSNNSNNNNNNNNSNYWNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPNDMKFNGQHNPFNGNQMVMDNNNNNNNNNNSNVFNSNSNSNVFNSNSGSFLQINNNNGSFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQSYDSTLGNNRFSSMMGQPIQQQQSPPQQQQQQSFIQSSPQAIPASNCNGNGSTSSSTSPLSPTLIGSAPGTPTSMLATTLFGFNLSSSPTSSPSSPVKKGKSQSALALSSSGGSGGSSGRKKPQKHDSMSSITNTNLKSTQASTLKESKRSNSSPNLKKQMQLQQLQQQQKLNENGTLIPPLPFASISENITNNNNNNNNNNNNNNNNNNNNNITNNPLSGSMEFPNSNNINQSSDSINGEFNIGQPESPKMYNSSPSPPPNATSTTKGGKKSKKSLHISTTQQSPSLNGSTGGSMLTPTMSGLSLSGGGSGGGFSPLISPTGTTSNKDLQSSPSPSPLLKSMSMGKLDLQDSIDSMSSPLSPNSSLSSSNGLLPPPPNSNNMNSSGGIPTPSTPTSPPPLTHHINIFSNLEFVKQLKDHLLPNDFKPEEHALERNLLRFQQFVKTLAEPLQRDVVTSMFELSVDAQLQYGSNLDNDNLSALMLFRRKILNFNLFRMMMLNDPNSFIPLPSPFPIQTTTISSNGTIVNPTNVNNNNINNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTSANTVQSGTTSNSNLVFQQTSNSNTLSPSQQQQQQTQQQQSINGSSTGSLSDAQYQDLGIHLDTSSANSGCGINVSIGSSIGGGGGGSSLNGSNLNGSSSISGSISGGSSNGGGQFIMSPQFSLDGAYQQQQPSSYNINNEMELAEKDEDEIFNNNNKDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSSSINSNINNVNNCNINNNSNSNNGSINSPRPSTPTTLNSSGKRSKKIYRGDSFGAGNDISTGLMASSDQIIPPPQQQQHQQLVNNNNNNMNNSENNILLADSNKGLSVSLGSLPTNTPSSMEIEQQQQQQQQQQQQQQQQHLNQQQILHQQLHHHLSSSLGGAQFTNIQQQQQQQSGNIFYNSPYNSSQVYMNPYGTSITNTSLAGPSTTSSAMQHMITNMTSSNIIVNNQNNNNNDQNNNNNNNNNNNSTTNSNVNNNNNTTNTPSSPPQPNNCTPTQTSIITSNGVVVPSLQMRGTITNPPPVLPTPDTLVLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQETPHTPTSNSISSPRSSPVHQQSPSNTNTTTTSTTTIRHSAVTQLSFAGLHNQQVSPISPRSPRSPHGTSGDYNDGSQSPSSRRKNRFTDFQIKRMNDCFENLDKNNNGKFTSEEICQIATELGLTDQQVRVFFQNKRARSRPSPRGQPTNPLTSSTNNGNNSNLALQHLQQQHLQQVQQQQQQLLQLQQQQQQQQQQLHQQSANTTPQLNSMNPNSINYNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIINNNITTINE", "length": 1723 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q557D0-1", "protein_name": "RING-type domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTGSNNLNSLNNNNNNKISLQETIQDIIKCSICLNSPKNPRFCPRCSALFCLECIDRWIISNPTCPACRDTLTSDNLNSNLIVSNILNELVKSEQEEYTSSDICNYHGYERLYYCSTCQEPICSDCALFKHKDHKIEKLSINFNKNLEILKIEEEALKKRQEELIELNSFLELDAETLLKNKSQIEKEISKVVITMKARLKYDFERRYNTILESQEKINNELTHLDFIYNDLLNHYKKSPSSFVLTSQQFIGVLQSVHKNSIMDIYTPINTDLTSELIPPFENRLLKFENFTTGDCLFSSRIAFYGMTWEIKCGIEEDNCFLNLKVLECNSDGKYFYMFTIVNQKTNVNKLIEFDLPFQAGETFYIPNFSSKQTLIDEGFILPENDILLLQFSFRPQNYFCYSNDLKRYIDILEYRHRGYFGEEDEDDGTIETTVTKLPNDKSTILGSDNYNDNYNDDGIGDLDEDEEEEEDDEDDDDNLDDHLQYDNDDDEDEEEDDEEQNEEDNDEEGTNIPTSEYEDLDTSSASVISNINRRDRFKNNNINNNNQFVNSNNNNNKYNTTNSNNSIVGSSRYINNNNNNNNNNNNNNNNNNNNNNNNNNNNNYILNRSYSTNKIYNFYQDEEEEEEDDDSNIDDQDEDEEEEDSEEESSLSSSDLQDLDSSGDQSSLEFSFSKYTNNYYSNNNNNYNSGGGGGVGGAGDNNKIECIRRDFNNLLKRINFTNSQLTNLKPGVPKDGDLLNDDENDKKCNIPLNEDEEEDEDEEDDVNKNKTTSTTTTTTTATTTNEVVTINPNTISNNSQDEEEVKSDIVKLLENGIANMLNNSNSSNRSSNNLKQQQQQQQQLQKDDQKQKDEQQNKSNTGCDIDQLNILSKLSIKESCDSIKNNDNDSLGNSTNNNNNNNLNNNNNNNNNNNNNNNNNNNNNNSNNNNLQSFLQSNENTENETDFNDNNTNPETNTETENEYLTSSNMNLDGGESEFDSNKSYEGSSTDENFNSDEDYQDEDNFNQDATGSESANNDDYLDDNEREGSDSIENYDEDIEKVLTSHNIITTPSIPPSQQPQPQLQTQPQTQPQSQPQSQPQLQPQSQPQPQTQPQLQPQLQPQLQPQLQPQLQPQLQPQLQPQTQPQQQKKYDDLSENQIQTENRNKKIKEEINNKTNNDNNNELGKSSKSNTSSSSSSSSSSSSSYSESESSESDSNNEYDNEDEDDIVNQVSNFNFNFNDASNFKNFSFRPKFPSDENDNDDNDDDYEINIDLKNIQKISPILRAIENGESNINHYQSPVSLSSSSSVSSFSGSGNSVPITATTTTTTTTTTTTTTTTDDDSGINMPISPLSASPPSPPPQNEPQINNETNDNDVKLPQI", "length": 1364 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559A9-1", "protein_name": "Probable polyketide synthase 13", "gene_name": "pks13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENFKYRNNENDVAIIGIGFRLPGCKNFTPNELWNNLKNGFNGVVELSNRWSDNFYTMGKVSSAYAGLLPFDELKSFDPLFFGINPTEVPTIDPQQRILLKCTWEAFEDAGIDPIKIRGSNTSVFIGTSTNDYQRIIREKDQTITNAFGTSLHATSNRISYCFDFRGPSMTLDTACSSSLNCVKLGYQSIRDGTSNLSIAGGVNLIIDPYFTASISDLNILSKTGSCKTFDASADGFARAEGSGIIVMKNLKQAMIDGDKIYCVIKGASSNVDGGGLQDKSNFYAPSSLSQCNNIKMALKSTNGTVEPKDISYFECHGTGTPTGDPIETRGISMVFNDESRSKENPLLIGSIKSNIGHLEAGSGIASLIKCCLMFKNKCFAPNINFKVPNPKIKFEEWNLKVVTEPIQFTKSNTCIGLSNFGVTGSNCCLILSQFNNNNNDNQIVGNNNNIKSNKEYLIPFSSNSVKSLENYQQLLIKNGENEFKFLEFIKHQIFTKPTSLYQRSVVIASSWDQFNNAKIMKTSNSKSSNISIERNNPITVFVFCGQGSQYDRMGLELYNNDFIFKESMDLLDNKLSKYYGYSVLEKLRNCDSKSIQHPMIAQPVMCMFNISLFELYKHWGIEVSFIIGHSLGEIPAAYCSGMINIDTLCYLIYHRSIAQTKTHTNGRMLSINISADEYFSQYSKQYPDIEIACFNSPTSIVIAGNEQKLNEISEILKEKGIFSAMLASLSSFHTSSQNKVKEDIVNKQFDSKQSEIPIFSTVTTNLFDSVTSPFNSSYVFNNIVSPVKFSQTISNLYKHIESNQLGNDIVFIELAPHPTLQFYLKQMIPKPTNDDNSIEFKVSVYSALNKKNNDIEEIQRTISQLYCDNGYNVNFKCQFQHDDTHGSINSNINQLSNISLPHYQWDDEKYWKEDPSISKLIVNGPQTDNLGYLNENSPNSKSYETFIDIKRPPFQYLKGHMVKGKYYFPGCGYIDNLLKIYKSQDLTINQMGFKSPLIFIEGVNQALQTNIFKKSTSNTTTNNNDEFRVEYHFNDQKTNRWILSSFGDFQLSNHSSNSDNLEKINIKQLIQNQCNLTKLSRDELYSHIKSKTGLTYNGVFQGVNKCYLGENCSLSEVSLELKREPSSFFNTAVLDTCLHGMLCLLEEQSQLVFDRIEGFKYHSSNVPTSEEEMKIHSNIYVYSTINPSRIGDSYSASIVIMMEDGTVLIEIENAVCTSLTPIKESISVKYPTNQLFSMYLQSKDSPIPSPLNFKSLYNQNQQQLKIDKQFTDWMQKCEKFISNQFFKNIEKRNPEINLEILNSKTIIELKSKYCQNLKNERLFQFVFETIKQLGVNAYDDDDDLTIDSSEDRKSIYEILIKSTKVIPKLLFPLEDEDLTIDSPQSLFENGLLDRFYNNPNLMTNQCQLIAQIIKESLKPLLNKKMVFRILEMGGGTCSLSVVVLNLINQLLLENPSFEIDIEYTWSDISPSFISAAKEKLSHIDKRINILYRSIDIEQPFIEKQDLSPSYYDFVIMSNVLHVVKKLSPSLDEIHKILTPNGHLLFVEIPYKELISDSIFGAFNQWWAFEDTDIRKDRCSIPPNQWIQVLSNHNYKDTIVSDNKECTWCCFVIHSQKPSLLELSKKIECNQYDNIIVFGNENSQDNFTKSIKLSYNNNIIKWVSNIVEIKKFIKLNIITNNSIIYFTKGIEELTIDNFKLINFQYIQINQLLLKYESKCKNVLVTRDCDGSNYLASSLIGAARYFDEYRQLELFTLDFDNDTIQSCDECSSSSCSNLIKLIEPLIDPKINIQREFLIRNNRVYFERAKLETNLKKSFKSESFENSNKLISTLNFNLDYQLQSKPFKQLLQNEIEVEIKATGINYRDYLVFTGSLPIEKTNHNGISNQPEFGVDFSGIVTKVGGGGGNGEFKVGDRVYGIGHNTTSSHITIDSRYASLIPNSLDYIEASSITSSYILSLYGIFDIGNLDIQDNESILIHSGTGGIGLSALNSLRWKGHKSHLFVTVSSKEKEQYLRDNYGSFITGIYSNKDKNYPKLIKEKLNQLGSNKQGVDLILSSLPNGDDNLNFKCLAKNGRIIDLSNNIDLFNISKSKIKKLLNTINDGFESGELQVIPIIEFSNSNIRDAIEFINERQHIGKIVISHDDSNLLIDLINKHSNQPNYSILKSDYQISQSNLGKNILITGQSGIVLEILKWIIKFSNSIENVIILSKSLMKWELELLIGKTMKKANNKIKFHFKSVDVSDSIQVENSINQILNDNPNIVNIDSIFHFAFTQITKKVEEIDMESLNVSHNAKTIGAINLHNQSINRNWRLNNFVMASSATSIIGSTDQCSYVCANTVLDSLSKYRKSIGLPSICTNYGAIESAGFVSKNESVAAMFNGIGIISISTDLILGTLDLQIQNQQSSTNLMLSDFNFLNFVNNNLQLSLISKFDFQTNLAKNQVNEKLQNQTQNQNLQIQSPSSTTDCQTIIKDSFLHKISEVLSIDISKLNLDLKLLDYGADSLAIVQIKNWIDMEVSPNLIVIQQLQTFTITSSIQYTINSFLKKKVQSQE", "length": 2551 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559I8-1", "protein_name": "Uncharacterized protein DDB_G0272530", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKIKLILVLIVFLTIVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCESNNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDVCTANNQCKFNNYCKSGKCVPLEKEGSSCDKDSSCSLTNACVGGKCVTKYQKPLGAVCNSSNECQVFSGHVCGANGKCSVYNQLLSKCKENSDCGPNGMCMCKSETENVCVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYPIFMCYQYSCFYMNQFIRSTQNYYKSFCS", "length": 301 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q559Z2-1", "protein_name": "E2F/DP family winged-helix DNA-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNISLLLNNRNRNRNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNGNANESASLNNGSEEIRSNPSSNFSSPIQSSLSSSSSSLSSNQATTPKKRSHAHKNSLKCQSPQMSPQMSPQMSPQMSPPLQYFPQHQMQHLSQYQLDHLQQQQQLIQQEQQEKQQQQQQHQHQQQQQEQQKQQQKQQQRLSPQPRSSQPRSSPPRSSPQRSPQLNQQEGHINSVQTYSGNNINDKNQNNTNNNNNNMSNNNNFHDDNNCNVNYNNIRNNSNNNNNNNTNNNNNNNNNNNNNNNNNNNNINNNNNNNNNSNNNNWNNNYCNNSFADETNKNNTYGMEYINISEENQYNNNNNNNNSNNNNNYNNYNNYNNNNNNNNNNNNSNNSNSNNNNNNNNNNNNNNNNNRNNIINSNINNSNNNNYNDNGYNNNSNINSNDSYNNNNNNNNNFNNNNFNNNNNNNNNNNNNNNNNNNNNKNNNNSNSYNNNNNNYNNNNNNFHNNNNNSAHNNNNNNYNNNNNNNYYNSNNNNNFHNNNNNNNNNGNNFNNNNNNNGNNGNMFTNVNSIDNVNRNNYNNYNGNNNYNGNNSNNNNNSNNEVSQITTTSLPVKKTKVFKAPREKKFKRGPDQDIREIKPATALLKQYFIGNSITEFNAERVGSILKINHEKLKDILDIMECASLVINNHSNNYVWLGLDNPGFLKLVFNVFHCSSNLVTKEPEFACLKCKENAYRCPTSVDLPKDTRLGSTVCQFMKLLLSKRIRTNPVNDFLTIYQVCFNFNFCSEGRCPEEDFKYLRNTAKVKRCYDVANVFNGLNILEKVGKSKIHSYQWCGDFTIQDCENGCPFGHPLLTPGTAYTTNPSPNPFNQFSNAYISSSAQSSLSNSPFIQGGFHGNNNNSNNNNINGNNINGNNNYGYNNNNNYNNYNSNNSNGFNNGNSFFQQQQPLVNSGVSMVRNNNYSYSP", "length": 964 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55A39-1", "protein_name": "Transcription initiation factor TFIID subunit", "gene_name": "taf9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSNETLPNSEQENNSKTDTKNDNKNIGDENKIIDTDKDMKDNDTINGKENGNININSNNNNNNNIDTDKEMKETSSIEEDDNNNNKNQNNNNNNNIKEENDNLTELKNNNNKENKENKEETIKEDKEKENNKEPVKNKEETNNINNNNNKNNNSDNINNNNNNNSKETLNKISSMSKVSLTSESSEINGQVNTGVVNNNTNIDITQTNLDEPRDSRVIKSILKTMGIQAHEPRVVNQLLEFMYKYVFEVLQDAMIYGEHSGKTDIDVSDVRLSIQSRVNYQISTPPPRELLLSIAEEKNKTPLPPIPNRYGVFLPPDEYCLTNPNYQANPTKPVFQPVQPLVGNTSRGNYNKKQSDKQVSIKFNSMSNNSTTTTTTTPPTIGSQNGTTIVSPPNLGSLGTTTTTTTTTITPPPPILPLSSNIKPPTLSIPSSITSPPTVTTKNTSTPIIGLGSTTVAPPKTSSSSSTIAPPVLSLPTSITSPPTVTASSTTTTTTAPTTTSPTIPSLSSPTTAATTITVKKEDVKMDDFDDFDGQMKDDITPSSTPQQPSQPTESETTTTATATTTPAVTTTTIPPTTTSTTPPTTATTSTTPPPSTTTTSTPPTTSTTPPPQIKEEK", "length": 619 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55B17-1", "protein_name": "Amine oxidase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MYKKILLIFALFILVNINFASSEFKKNETESANLKSLYASYLMKNNNNTKYNNNDNSNNTNIYNDSVTKNKSKNKNELTVGIIGGGIAGLYAGMLFIKSMIFDDLGIDYTILEANKERVGGRVYTHKFDDHKYSYTDLGAMRIPLTPLMDRIVSNQNYSLFSKLAKGGYQIPTVPFLISVNNEISYYNGIRVLKGSPVLNPSDPFNYSDSNNGGPGKGIPDEYANRTVDSLILPVFYQFINNLTVDFYNGFKQMLKYDSYSARDYLKTFHNYPNSVIEYIENLSTISGRLDQTSITELLMSVFDFSGEKFVCVEGGTGLIVKSMSQIIKKKVEMGSFVTKISKSFDKKNNEIDGLNVEVVRDSNFGGSDTEILKFKHVISTTTLPALQRIDTSDLKLPLKLKVAIRSLKYTGAIKLAINFKYRWWEDSEFMSGKPIRGGSSNTDLLLRQVVYPSYGINNGTKGVSGVLLASYSGGLESIRISSMIGKKDKERKLLNIVLRDLAEIHNVDLKKLKNLYKDHFFQSWDNDEFSSGAFALFSTSQYTELFPSTGQSHVDGRFHLSGELTSVHHAWMIGGLNSAYRSVDLILKNEGFEDLRIKLRNNWGTIEQAEYPSLDWYKYDSDINHYKLY", "length": 630 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55BT6-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKLLYIVVFLLFAIKLCCSEYCGETYCVENRNCYSFIGCRNSTCLYETIDLDDEVDCTVDTCSDRYGVKNTPNNSLCPPENLCDMFLCDTQSGCVAIPKVNCPAPNPCQIPLGCNRETGICEYDEIDCHDDNECTNDYCDPILGECVHFSNDTICSNKASNFSTCVLSGVCGEFGCKYVEDNCNDGNPCTDDYCDFKNGCVSQKNDWNCDSLSACSEGICTDNGCVQQEVDCDDDNPCSEDFCHPLFGCGSILNDTICTNGNKCVNSTCTEDGCSLPVPIVCQDGNPCSDDTCNPSTGCQFTLNNSNCNDGKKCTIDQCGLNGCTHTNITCPPKRVVDIILIGLICRNHYCDQSTGNCVPDMNSVSLLCI", "length": 370 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55C69-1", "protein_name": "Chromo domain-containing protein", "gene_name": "hcpC", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGKTNKKKIEEESEEEEAGDVFEVEKILDKRVQHGRIQYNIRWKGFSADYDTWEDEANVVGCPELVREFESSRIKEKKKNRKRKNVIIDEDPTEEISSSLSSILSSPQPQPPPPLQLTNHSPASSELAITTNTFLISNCTSTSNKTKISIENEEIIKNDHARYGVPYVEGIGFENGDCVDEIVGCKPFGENNLLYFFIRWRGKEKLSWVSNESIKQKEPLQLIEFYESRLKFGYKGEEN", "length": 239 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH5-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKHEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEGYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKNNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CH7-1", "protein_name": "SsDNA-binding transcriptional regulator", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIFKITRTKRRWTKNQKKILVMKVVEKKVVVKKSKTPNTSPSSSSSSSSSSSSSSSSSSTNDKSFNLSDKRKISYSNFKGLERIDIREFFEDKSGELKPSSKGISLTREQLVVILENGDTIKDWIKESK", "length": 129 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CJ7-1", "protein_name": "diaminopimelate epimerase", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEPSIDNKPSFRINFTKMHGAGNDFVVFEKNKVERLNGDKSTVTFEEIVGFTTKIAHRKLGIGFDQLIVIDDNPIDKNAAYGMDVINCDGNIEVMCGNGVRCFSKYIVDNKVLSKNLKEQLNFDGDDDIEQIIETKSGIVKTYPLLKHHLNNKDNDVIMVKVNMGTPKVSRFINEIDRHIPKVLTNQSPIESYMYTIDIGLPYCSKLECVYVTVGGNQCVVFIDRNIELGYLDSSYGDHTKFSTIDFKEISDIIQSNVNGFDDIPNVEFVIQSPQDKLENKVISRVVERGNGETLACGTGACGVAISSILKGYCNENTEITVEMPGGKLLIQWNPNNEIFKTGPATSVFKSQILI", "length": 355 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55CV8-1", "protein_name": "Lipocalin/cytosolic fatty-acid binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MELLVGGTILGALTYAYSSLKRTIPEGAHACSPFYPEKYVGKWYEIARLDFYYERDMNNVSAEYTLNKDGTISVINSGYNYVEKKRESVNGKALFVHGSDEAMLKVSFFGPFYAGYNVIAIDPDYKYALVAGRSLDYLWILSRETSIPDHIKKQYLELAESIGYNTSKLIWTEHDNINNKKD", "length": 182 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D49-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIKIMTWNCQGCSTIKSMNQTKNTINLIKPDISILTETNLKKDQNLAQIKNHYSTGGKGKEARGKGVMAINHLEQIEIKNLEEKEGRILKFTAILNNMEINIICIYAPASYDRRKGWFSNNISLEDLEQADIVTGDFNINKYAKIKFKDGSSDKRKFTENETIEFLMMEVGLTEILPNSTTKTTFKDKLIDRTFLSTKMHQLNHSYKIIDKINKSDHNIVVMDFKIPNFTKIYKSPLWKMNSIIIKEDKTIKKIEKIIDHYQETKRKNINITEYWIKFKKKIKKQCITTEKKRILERKKTLSNLANEHTKTKNKYEKETISNEITILQEEERIDRMIKSSINYINNKEIASNLLTSILKKRDSSSQIHRIKNPSNGEIETEQKEITDCFRKYYETLFKEKECDQETHTELLSTWNPPIDKKKLTEMEDRIEEYEVKLAIEKIAEGKSPGEDGITSSFYKIHQHKLIPILTELFNFFLNNEIPTEFKNGILTSIYKGKGDVLEISNRRPITLLNVDYKIYSKIINNRILKILPNIISKYQNGFIPGRLLHNNIIALDLAMEKSDRNTIITFYDFEKAFDSISHKALIRTLNHLKFPRKITNTILSMLTNTNIRVMVNGQLSESFRAGRGTKQGDPISPTLFAIVCECLSTSIRKDNTIIGIKLNQNNSMKIGQYADDTVTLASNIDDADKMDMKVIKFCQATAAKINDNKCVCITKNPKIKTKYKTIGAKEEERYLGFFFNRKGVISKVDDTVNKLENLTKCYSSVSSTLKGRITILKSYLLSQLTFQLYINEINDIKKLENVNANMLFKGDRWAISKERSRRDYEIGGLELWNMATRSNAQKAWIYEQYLREKDDQNCPPHMEVWKSEKENSLSRIHIKCWKAWKLLHHPRERITLKLNQVKPKYENKQKLKVIYRNMMDIKYKGWNKHQPTTGQKLIQKNINHPILPFREARSITTIKGRDLAWRYLLKALPKHHGENCHSCKEEESSMHIFFECKSIKQNIDSIYQKVCKDSNNTYHGPWSEKVLGKLLTPFSSNLIGAIMESIWYRRNQIKFNDNTTIITENQIIHKIKKARDAEWDRTRKIVEKQLRQELRCTDNRESINRTASIKRRLEKFSHNWNSKLMTINIPEHFIPYCSYNTNYS", "length": 1144 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55D57-1", "protein_name": "J domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIQVKNKIKIISILITLFILTINQVVECKSSLYYSILNDYEKGIDYYKILNVTKDSTYSEIKKSFRKLSLKHHPDRNVEKSSHSLYILLNQAHSVLTTDETRKEYDELLVNGIPWHENYYGKYAYRYTGISHDLRHVLLGLIIVITIGKFVYQYNKHHSMIKRAKQTDQYKKRLAQLDGDEDEIQLVIQGADKPTISSLFIIQLFFIFPFKILKSIYTFIFINKFKFIQKTDEEKEEEYRLKMGYTKEDWEYHKKKSIERMEKLKQSGKYKKYLRSKNK", "length": 279 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E25-1", "protein_name": "DRBM domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSNKSHTSEKVQLNEFLQKKKQPIPIYHTESKGSEHNKDFKSIVVVNGKQIESDWKKSKKESEKDCAKNILEFIETLDGYPIYFTPFSKDPPQNNKKIYDEKLQAVYNSVSSGIEGLNNNSFFTKIENNNNNSSSNNNNNLDHNHSNDSSHTSTDNNDNNSNNHNNNNNNQINIDLTMENVNISQSKTITNEGTLNNDNDNNNNSIQQQQHQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCFDKDKTNLKKKKKIPFSYNTDLIEHIDLFKRQDFPQTYPSRTTYTDTGHTQQLQKQVFLLTEKIGLMELFYKKQIRVILKSHHNLETELSALKSFVEDCSVTPIEGLELYSIPVPLNPNAKPSAGTTPVLSKSETQNEIIQPTKPPTKPPASCLIKKKIPNVNMKATNKTTTTTSTSTSNSSTTIKTTDSFKNTTNNQHPNTLKPMVSKINQQTSDFIFPLPKPIIRRNPIGNGNLEKKIEKKNSKPNTIVLGVDTQSQSKTKITPSPTTPPPETTPTTPTTTATPTTPTTPTTPTTTATPPPTTTATPPPTTTATPPPTATTPPPTTATTTPPPPPIIATTKTTATATATTIPIDLNEIQIPIRSPQDLTVNQSMISTAMMIASAAQRNPKLTMKLKRKLEESPTLMSKLQKIQFEKEEEILCSQDLHSPIMSPQSPTHQPKTLEPLSPTKKSTQKSPPPTSPSPIVTRARASSNLLPIQNLISKK", "length": 733 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E47-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKSGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55E48-1", "protein_name": "thioredoxin-dependent peroxiredoxin", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTKLKVGNIAPDFEAKNYLGQIVTLKEFKEKSQPIVLYFYPKDNSPECQKSCEFRDKYQKSIEAGAEVIGVSSDGEDSHKSFVSKYSLPFTLLTDKHSKLAKLYGVNGILLPGRKTFIIDKHGFMAVFMMVYSVQLLMSMNL", "length": 142 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55ED8-1", "protein_name": "Decapping nuclease", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MKQTLNVIGLINFIKKQRSFNKSPITITKPLEITRFSYEGNQLFPAKLKKFKNPTIDSDLLVGFQGPDSIESDSQTPLSLVLNKLIETKHDVSKSNFISFRNSFRKLFESMYDSEKWNIQVQRINSTIHLGMDNPTQDFHQLKNFHLKSMYSGNYFEKISTIDNNNNPNDNKHKYCSIIQSKLFNNNFILACEIDCWKKSIQNNNNNQNNNNNENNNNDDDDENYNIDDYVELKTSRDIEDSKANYQFRSKKLIRIWFQAYIAGVSKIFLGIRNDDFFLKKCLNFNTHDLPNQAINWNKDEMLIYGNEILEFIKNNTCSGKSYTLSFNYPIISLVESDSINIINDQYLQYYLNIPKNFENNYNQNNNQNNNNNNNNENNSDDTKNNNIQNNNENNNIQNNNENNNQNNNEKNQKRNFGEEKEIKGDENEERLSKKQKKLE", "length": 440 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55EZ2-1", "protein_name": "Reverse transcriptase domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MIAKTQIKCTTIYAPAKSNERHEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGITFPRNKSTIDRVFVSKKILHLNPIVTTKEIKLKSDHNMVIIELKIPEYEQQKKGERLWRQNLETLKMNSTSLKINKTIKYYNKKFEENTSKWYKLNICEQWLKLKDEIKKLSINIEIRESNKTKNKLKELAEKLETAKDSRAIFLKEEINNILKEQVRIKQANQTNTHINNKETPSKYLTRRLKVQRKTNEIPQILDPSNNCLVTKNEDILEVARRYYENLYQKRECNEDTHHELLKTFNKRIDQKILDEINQPIEEYEIRLGIEKIQEGKAPGKDGLLPTFYKNHINEILPIISKLYNHFWNTTIPKDFKQGILITIYKNKGDPNNLDNYRPITLLNVDYKIYSKIINNRILKFLNKIISPFQTGFVPRRLLHDNIITLNSTIEIIKREINTKEDMEPIITFYDFEKAFDSISHNAILRTLAHLKLPLKMVLTIMNLLNESETSVYINNSLSKSFTSKRGTKQGDPISPTIFALVVECMATTIINDRCINGVTKETIKILQFADDTATIAYNFMDHFLMNEWIKKFCQATSAKINQTKCSCITFKWNTRTLYTVIKSNERYLGFDFNNKGIKSKINTISDNIRAKLVTWNSTSSTYMGRLIMAKTYALSQLTFHTYINTTPQHNSIENNIVKFVFNTKSKNSLSLQRRQNNYINGGLNLWNLKTRELAQKAWLFERYLHQRVSNTPSSYIKLWEEELKNNNNNKTTTKQNQLQLHWQCKQAWTQLKTPQNKQTHYEHLPKLKKIYEDMMTTQSPEHNKFIPTPGQKEIMTKINSKHLPFKEIKKIINMKGRDLLWRYTLKALPKIYNMPCQQCGEDETSEHIFFNCKAHIKNTQEIFNYTLTKCGHTTHTWNVKILNHLQIALVANLIAIIFDKIWHKRNKLIHDEKEIIIHRQQVIRELIKTQRAAWDRTQAVINKTLRIKSKQRPEEQNKLDSLISLKLLQFSRQWNSPLHAIELPKHLKKYNNSLSTFYK", "length": 1047 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55F94-1", "protein_name": "Dynamin-like protein A", "gene_name": "dlpA", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVFKKKDKSDDKKKKHDEETPQGTFQPASQSTSNTNLNSLASSVNNGASVGSTNGSTPNNSNGSTPTYNHNNSAEELEKQKKEEDEKRKKSELEAAAAVVAKKKEDEEKQRKEQVELERKRRDEEIRRTNAAAANAANKELNEQVEISSLEQMGKLDPSSTIHDMFSFFPNEVYNSYEKLQYFSRDLNTAVSHPEIVFVGPRSSGKSSLIEAFIGRALNIVGGGNIVGVGGSNANGCSKRVLYLQFTNNIDFEVPKVTIKKDNTIKEFDHDIIVSIEQLNENLAKRNQLTNDYIEEPIYVSIESRTTLNLTLIDSPGLLFDQSQAESNKIESIVSSLLRPSHRLIIAVESCSQDWKSMSMGQYLKKIDPELSRSTFVFTKFHHTVRGFSSTRDINKYLSGTVPDIKGFFVTLPNHQVRASYSEANRFQEKIYQAHKRDMHALEQLQYDKRYERTIGVAPLRRYILNIVWKSYQDTIPRILKHLRSKRQTAEATLNELQKQSSSLDSTKLRSIASNYTVTFLQITEKLLSGTSEGNPSANGQTLDEEKSQQGDCGEWVDAYKEAIYIDPEEWNIPYWSSKLYGGQQLERLMAEFKAVCDNSKISEVKMDDIATASGINKLNNIPNYAWAASDLTSLISRDTFVPLIEQLCERAMYIMKRLTDIADKVIDSRRKSRCIGSSPFGGNGLNNINSGGNNGININDRLSNTDMDSLDQYPFFTHHVKNLYYDFVHRAAKGCKEKCMDEFYSSRTIYWELTEHPDSSLPSIRNDHHETKTAVCQLATKLFDSIRQRITKNVLLKLYNFFLVPMQTDLWNEIQAQITCLSNEQLEQLFEVQATREQLKQEEKKQQQILEKYSQIDEQFLKAASLFCRPLSNPTPSA", "length": 880 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55FX4-1", "protein_name": "SET domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDINSNHIKKINDFKDKGNKEFNKEKNKDKLNKRAITYFQLGIKYFNDEKHKIEINDQINKLISILYSNLSLMYLKGDEIILSLEASNKSIEFNNQNSKAFYYQSICKSYLCDYKGSMESIDKAISISKQDEKVVQQRNRLIEITNNKVKEDVYFENVLKNQKLENVAYENSIEKGRYLISKRLIKRGEEILRIAPFSFSLNGKYVSKFCGVCYQKKSIDNLLKCKDCDDFAICKECKAPNEPLSKYHPNDLCVLYKLNNEYYKMNNFEIANEDNKERGLTDERRLYINTIYNIFKNKTNNKAVVEVDNAISSSVIDVLNLSKKLLNHTNESQRAYSDSTKMKTDILELIFKSFYGANTLKKDEISNIIRIVDCNSHGYSDVISQKKKASGLYPFSCYTNHSCIPNSDYFIDKHGVMVLYASSDIQESEAITISYIYFLNRVEKRRKDLLNGHNFFCTCDQCSFQSSLTEEVCDKCNEIIPSTIGNSNLVYKEPKSLKETGFNYICPKGHTKSSLVYDIDNDQLYPTIAENYSKCKDLRNFRKINIFKEMLENRDFVKKLTPREFEVTPLAKYIANPKKSNSMLFEELINLVRGSVECGLTKSIEESNYSTYLVYDYYDLYKSLLLESKPQILKLNSIRDIIIKLLTPMVYNQNKPRIDKKLNKHLSNKINLKKNK", "length": 676 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55G93-1", "protein_name": "Tubulin-specific chaperone D", "gene_name": "tbcd", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MENSEDISLNSSEKSIESSVVNLEDQQQSQQQTQQQTCQKTFVQEAPELTILIDKLIQLKHSNKDELISNTTRIIYIIDQYLEQPTLLDIHLNDIIQPLINFIKSNYINNSNNNNTTTTTTTIMTETEIVIKKLSIKNSFRIIYVLSKVRGFKTIVKLFQHEAIDLLPVLDQLEISYHQWVNINKQRDRLNEISVSYSSGINLKNYIKPEEESEQEVVDENNNNINNNHNIDDEYNENIISWEEVYVLALWVSLLVIIPFKFSSLDSASSGTASAAGDGGDGDGDGQLKSISSRILKLGKLALSDVSKIRDSFSELLSKLLNRPDMKFEQKQFIKWCTNSIQLISNNNNNNNQNNSSNNNILLIIGIYSTLATMFKKGNRLDFLPIDMNLYEKIMEANKYLSLSGSERITKKIFLKLLQRIAIIMLPPVSASWRYQKIIKPLLLKGELIKQINNNNNNNNNENNNEEGEEEEEEIPEEIDEILEEIMKSLKDKDTIIRWTSAKAIGRIVNLLPKDMGDQVIGLVIDQMFEKNEFIDADPSAWHGGCLALAELARRGLLLPERLDVVVPLVIRALFFDIIKGTYSIGSHVRDSACYLCWALARTYHNSILSPYLLPICRNLVVVSLYDREINCRKSASAAFQEMVGRHQGLVPNGIEIVTSADFFTVGNKNNSFTSLTTFIGKFQIDYYPIVIKHLATIKIYNWDLEIRQLASKSIHLLTNINPNDIVSNYLPLIIPNTQSDLVHVKHGASLAISEILISLFENNNINLLSDNLKMMILMTIKNTKNEKLFKGKGGVLIRIGMCKIIYSICLVEFSLDKNLSEIKKPTESTSTNGNEDRAAALKLKIAMLKAKTASQINKPIITPPSSKSTTNNNNNNNNNNLNDNEIAFNIILGYLNENLNHPNEEVQKEASKAFELLFSKYISSNEKISLLLELIDSHCKTLKFDINRSARRGSSLLLGSLPFNSANLSYDLLSKVVNELILSIFQDDPKFKDIETRVNSISSLYKIGIYILNLIFKNQENEQKEEEDFKKSKNYNLFIKIWNCLGLATNDYSIDKRGDIGSWVRELSCKVLFDFIKFIITNQNSSTTTTTASTTDLSIENLINEKMITEFICKLFQLSGEKLDKIRDVACKIIHELLWIENPSSINNIPHKEELKKIIVKDQDVHFNWFRTEESLPLICKVLKFNCYLYPLLFGLFSSLGGTSKYLINDSIQSIKQYFSSFDNDEKERFEKIISFSKAILEITNNTTQRMIQPTFRSIYNLLSTHIFDFLIINNLNEQSIFETILFNCYQIIESNQDDIYLLLNSIELFSYFFIQFENNNNEYIKDYSLKALLLLLSNLKYPKVRKLASDQLKKSTRLFINNNGDDETPSLIKSLIFNTKWDDSVDLIIEPLKSLLLLLNQKHLLELLSENPTKKPIPLAPPITSIEELKDKIQNPHKQSDDNNNNNNGELINNNTENNNNNNFDDNLPEDSQDLMEI", "length": 1480 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GP8-1", "protein_name": "Rho GTPase-activating protein gacO", "gene_name": "gacO", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKLPPPPVQSSPQGFQLPSLHSVQLKPVRPPPQPTQQQLASNTSPREVGTSLSPQSPSNNINPSSSSSSPSSSIRQSPSSSPNVARKVPPTPTNNNGGPPTTTTTTTTTMPPPPAFIKKLSPSSSPILPKRIVSSPPLNGNTAPPPPPIVHLPPPPPTNLPPPPTLSPSSSTTTSPSSSSLNLSGGVPLPPRILRNSDGSANNNNNSNNNSNNNINSLNLSTSGGIPPPPSFFNNNNNNNNNSGSFVNSASSNGSPSLQSQNSVGYFKPPPPPVPTRSASLDPKQMGQFIKPQQNQNNSNNINNINNNNNNIILPPPPNININNNNFVPYIPSNNNQQQSTTPPPIVSISPLKRNSIDNSVVNKRLSQDLNTMLVNRLQHGLSPPVATPFFDDKILGSASKSAELKEKRDQEERERRERERIKKEKEDSEKKEKKEKKGKEEQEKKDKKKKEEQEKKDKKKKEEEEKKSKSSSSSSSSSKKSSSDNTIVNQNIFNNTLSQIMENQRDAQSLSPSSLPYPLILKLLTESIMSLNGPYTEGIFRITGSGTEVNRLKKQINEHDFSLDTQDPHVLAGLLKLWLRELVHPIIPSELYNDAIKSRSKEEVSRIISLIPDQNKEVLNFLIPFLKNVSQPHYAQYSKMDIDNVAMVFSPGLLRSTVLTTDLLLNSQYEKDFVKCLIEMSP", "length": 684 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q55GR8-1", "protein_name": "Thiamin pyrophosphokinase thiamin-binding domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEKQEEEVQQQQQQQQQQQQPDKNNKETITWDVAEYGGYLFDKKLKAHNPLNHQMPLQYHHSQSTPHIPSSLSTSSTTSIKKPSSSLSDDESGGSSSSTPHSSNTPRKQFSFDDHCALILANQKLPKKLVDYFWDKCSVRICADGGANRLYSLGTKINQSSRWIPDYIKGDLDSLHEGVSDFFSKKGSSIVLDSSQDTSDLQKCFELIIDLEKGSGIKYRKIFILGGLGGSFSHEFANVNTLFDHPGRKIILASKDNLAWLLSSTYNHNIICRSETKCSLIPLSSKASQVTTSGLKWNLVKQSLNFGELISTSNVSLDNKVCVETSNPLIFIVDINP", "length": 337 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q561S0-1", "protein_name": "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial", "gene_name": "Ndufa10", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MALRLLRLVPASASARGLAAGAQRVGRIHTSVHCKLRYGLLASILGDKTTKKLHEYSRVITVDGNICSGKNKLARDIAEQLGMKHYPEAGIQYSSSTTGDGRPLDIEFSGSCSLEKFYDNPKSNDGNSYRLQSWLYASRLLQYSDALEHLLSTGQGVVLERSIYSDFVFLEAMYNQGFIRKQCVDHYNEIKRLTLPEYLPPHAVIYIDVPVSEIQSRIQKKGDPHEMKVTSAYLQDIEDAYKKTFLPKMSEICEVLVYSSWEAEDSTKVVEDIEYLNYNKGPWLKQDDRTFHNLRMLVQDKREVLNYTTVPVYLPEITIGAHQGSRIYDSFRELPGRKYAPGYNADVGDKWIWLK", "length": 355 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q568T5-1", "protein_name": "Chondrolectin", "gene_name": "chodl", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MRATLRILCALTFLVSCSRGARVVSGQTVCQGNPEHPCYKIAYFKDVSSRVAFWEALQACEMDGGSLLSIENTAEQKHIEHLLRELSVSSSTGPASITDGDFWIGLTREEGDNAQEPGAFASCPNLYRWTDGSVSLFRNWYADEPSCGGEACVVMYHQPTALAGPGGPYLYQWNDDRCNMKHNFICKYEPESHLVKVQSDRPGGHDVDLSTEDKEDRRTPPTDEDESPRLIIAGPSSMLLIYVIIPTIPLLLLILVASGTCCFQMLSKSKPRTKTSVNQSTLWISKTPKIDSGMEV", "length": 296 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5HYN5-1", "protein_name": "Cancer/testis antigen family 45 member A1", "gene_name": "CT45A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGSAMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTSSFSGDDLECRETASSPKSQREINADIKRKLVKELRCVGQKYEKIFEMLEGVQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI", "length": 189 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5I0J8-1", "protein_name": "PHD finger protein 11-like", "gene_name": "Phf11l", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEPSSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGATVGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASFLKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKFEEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGDSL", "length": 293 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKDLAIGVIFILQCSMGILRHFILLSYYLMLHYNKHSLKPIDLILMNMFIANFLIIFPKSMLQTVEAFGIKLLFSVFVCKFLLYIERVGRSVSIATVCLLSVFQAITISPRNSCLYGLKVKVPKYISLSIFLCWALYFVVNMILPVYAYIKWSSNNMTYKRTLKYCFSVGHDEFTGSFFTILFVFPEVFLAILIVWSGSSMVVILYRHKQQVQHIYCNYASTRTSPESRATKSIVVLVSVFICFYSISSILYGCIALFCDNSWSLINIANIISLCFPVLGSFVVSHNPDFPRFSLSWIRNTRRV", "length": 306 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3E9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vom1r15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MVNDRMESKDLAVGVIFILQCSMGILRHFTLLSYYLMLHYNKHTLKPIDLILMNMFIANFLLIFSKSVLQTVEIFGMELFFNVFVCKFLLYIERVGRSVSVATVCLLSVFQAITISPRNSCLNGLKVKVPKYINLSIFFCWPLYFVINMILPVYGCIKWNSNNMTYKRSVKYCFSIGHDELTSSIFTILFVFPEVFLAILIVLSGSSMVVTLYRHKQQVQHIYCNYACTRTSPESRATKSIVVLVSVFICFYSVSSILYGCIALFCDDSWWLINIAHIISLCFPIFGSFLVSHNPALSRFSLSWIKNTRRV", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5J3F0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "LOC100911184", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDFWNLAIRIIFLSQIIIGILGNVSLLFYYLVLYYREFTLKSTELILMHLMVANIIIIFSAGVPQTMTIWGMKQFLNDFGCKLLLYIHAVGRSVSICTTCLLSVFQAMTIRPQKFCGNDHKVTMERYLGCFISFLWVLYFLVNFIFLVYTYIKKNSNNETRKRDFGYCSTVGSDKISDSLYATLVMCPEVFFSVLIAWSSGSMIVILYRHKQKVKYIYSTHVSRRDYPESRATQNILAQMFTFLAFYTLSSTLRGSIALLSNHSWWLMNINHFTSLCFPSFGPFVLMSHYSIVSRFILFWLRKNCSNFLL", "length": 310 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5JQC4-1", "protein_name": "Cancer/testis antigen 47A", "gene_name": "CT47A1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSATGDRHPTQGDQEAPVSQEGAQAEAAGAGNQEGGDSGPDSSDVVPAAEVVGVAGPVEGLGEEEGEQAAGLAAVPRGGSAEEDSDIGPATEEEEEEEGNEAANFDLAVVARRYPASGIHFVLLDMVHSLLHRLSHNDHILIENRQLSRLMVGPHAAARNLWGNLPPLLLPQRLGAGAAARAGEGLGLIQEAASVPEPAVPADLAEMAREPAEEAAEEKLSEEATEEPDAEEPATEEPTAQEATAPEEVTKSQPEKWDEEAQDAAGEEEKEQEKEKDAENKVKNSKGT", "length": 288 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q5QNN9-1", "protein_name": "Trace amine associated receptor 12e", "gene_name": "taar12e", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMSLNETQTENILLCYPLLSNSCPKLHRLAVVQVGLYVFLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGLLVMPYSMVRSVEGCWYLGDVVCKVHSSLDMTFCISSLLHLGLISVDRYWAICDPLRYRLRVTNITVTVFIVFIWLFSFVYSFYVVFSGVNTVGLETFIMQVYCVGSCVLYFNKQWGLICPILVFFLPGAIMSSLYMKIFHVARKHAKVMSERVTGGLKSQSSAQRERKAAKILAIVMGVFLFCWLPFFTVNALDPFFNFFTPADIFDAVIWFAYLNSTCNPLIYGFFYPCFQKAFKILIFTYICGVRNLDTFA", "length": 337 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5QNP0-1", "protein_name": "Trace amine associated receptor 12g", "gene_name": "taar12g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTSNESENIQLCYPLLSNSCPKLHRLAVVQVGLYICLLLMILTTVFGNLLIIISISHFKHLQSPTHLIVRSLAACDCLLGSLVMPNSMVRSVEGCWYLGDVVCKVHSSLDMTLCISSLLHLGLISVDRYLAICDPLRYRIRVTNTTVTVFTVFIWLFSVVYSFYVKFSGITAVGLEMLILQTYCVGRCVVFFNKQWGLICPVLAFFLPGAIMSSLYMKIFHVARKQAKVISERVTGGLKSQSSAQRERKAAKTLAIVMGVFLFCWMPFFTLTALDPFFNFLSSADVFDALFWFAYLNSACNPLIYGFFYPCFQKAFKILIFTYICGVKKANTLTFE", "length": 336 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q5R1F6-1", "protein_name": "T cell receptor alpha variable 5N-4", "gene_name": "Trav5d-4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTYAPTLFMFLWLQLDGMSQGEQVEQLPSILRVQEGSSASINCTYENSASNYFPWYKQEPGENPKLIIDIRSNMERKQTQGLIVLLDKKAKRFSLHITDTQPGDSAMYFCAAS", "length": 114 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q5RKI7-1", "protein_name": "Solute carrier family 7 member 13", "gene_name": "Slc7a13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAMDIEKKIYLKRQLGYFWGTNFLIINIIGAGIFVSPKGVLQYSSMNVGVSLCVWVFCAVLSMTSTLCAAEIGITFPYTVAHYYFLKRCFGPFVAFLRLWTSLFTGPGVLASQALLLAEYGIQPFYPSCSAPAVPKKCLALAMLWIVGILNSRGVKELSWLQTVSMVLKMGILSFISLSGLFLLVTGRKENVRRLQNAFDAEFPEVSRLIEAIFQGYFAFSGGGSFTYVAGELKEPSKTIPRCIFTALPLVTVVYLLANLSYLTVLSPQELLSSDAVALTWTDRVIPQLTWSVPFAISASLFSNLVTSVFETSRTSYIASRNGQLPLLCSTLNVHSSPFIAVLLDVSMGSIAIVLTNLIELINYLFFVFSIWTVLSVIGILKLRYQEPNLHRPYKVFSPFLFITAAISLSMVLIPLIKSPKMQYIYVFLFFLGGLLFYVPLIHFKLKLIWFQKLTCYLQLLFNICIPDVSDEHVAEEES", "length": 479 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5XHX8-1", "protein_name": "Sperm microtubule associated protein 2", "gene_name": "Spmap2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGELGEHRSRSSLLSIPVLDTKTSGGSEYRESDGSLDLQSTLFEDHWLQSSQATTERNTDDPEEEIPPEEMVGEELPEVSNLEDSLRRDLEVEVVGMSHLSINERTTPTTSSAKCRKKKNHRLLELAKPKFNWQCLKDRTGRCCKGHVWISPRKTNLQFCLYWPSVYWTERFIEDTTLTITVPEVSRRVEELSRPKRFYQEYYNNNRTTPIWPIPRSTLEYQASNRLKRLATPKIRNNIWSINMSEVSQVSRAAQMAVPTPRTLRLAKPRAPATLLEEWDPMPKPKPYVSDYNRLLQLATPKALSEKCVPDRSPQWEVLNVTKNAVASSRIISLAQPKIRKDLNEGYNPYYISPASLVAQASPRIYELAVPKHITKKV", "length": 378 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q63550-1", "protein_name": "BPI fold containing family A, member 2F", "gene_name": "Bpifa2f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFQLGSLVVLCGLLIGTSGSLFDIFQNPELDVESVWSEINYRIRYALETMDLDMLADYLSKRGIELKIKDLRILNLNHEVSPNGDEVTLKMPMALNASLSLPARDLTTDVSISMEAITSFAIEKDPKTGRRVLNMQRCSLNTDNTSISLLNRKSNFVNLALDSALYLIKRGLTLPVRRQLCPVLQLIISNTFHPDEISNPQTAIST", "length": 206 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q64583-1", "protein_name": "Cytochrome P450 2B15", "gene_name": "Cyp2b15", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGVLLLLTFTVGFLLLLASQNRPKTHGHLPPGPRPLPFLGNLLQMNRRGLLRSFMQLQEKYGDVFTVHLGPRPVVILCGTDTIREALVDQAEAFSGRGTVAVLHPVVQGYGVIFANGERWKILRRFSLVTMRNFGMGKRSVEERIKEEAQCLVEELKKYKGALLNPTSIFQSIAANIICSIVFGERFDYKDHQFLRLLDLIYQTFSLMGSLSSQVFELFSGFLKYFPGVHKQISKNLQEILNYIDHSVEKHRATLDPNTPRDFINTYLLRMEKEKSNHHTEFHHQNLVISVLSLFFTGTETTSTTLRYSFLIMLKYPHVAEKVQKEIDQVIGSHRLPTLDDRTKMPYTDAVIHEIQRFADLIPIGLPHRVTNDTMFLGYLLPKNTEVYPILSSALHDPRYFDHPDTFNPEHFLDVNGTLKKSEAFLPFSTGKRICLGEGIAQNELFIFFTAILQNFSLASPVAPEDIDLSPINSGISKIPSPYQIHFLSRCVG", "length": 495 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q66X01-1", "protein_name": "NACHT, LRR and PYD domains-containing protein 9C", "gene_name": "Nlrp9c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVDSSSYGLLQYFQKLSDEEFQRFKELLQKEQEKFKLKPLSWTKIKNTSKEDLVTQLYTHYPRQVWDMVLNLFLQVNRKDLSTMAQIERRDKQNKYKEFMKNLFQYIWTSETNTYMPDRSYNTIIDRQYKALLDIFDSESDPATAVVLGTRGKGKTVFLRKAMLDWASGVLLQNRFQYVFFFSVFSLNNTTELSLAELISSKLPECSETLDDILSNPKRILFVLDGFDYLKFDLELRTNLCNDWRKRLPTQNVLSSLLQKIMLPECSLLLELGESSCSKIIPLLQNPREIIMSGLSEQSIYFYCVSFFKIQLGVEVFKDLKKNEPLFTLCSNPSMLWMICSSLMWGHYSREEVISSSESTSAIHTIFIMSAFKSIFGLGSSKYKRFKLKTLCTLAVEGMWKQVYVFDSEDLRRNKISESDKTVWLKMKFLQIQGNNIMFYHSTLQWYFATLFYFLKQDKDTYHPVIGSLPQLLGEIYAHKQNQWTHAQTFFFGIATKHVITLLKPCFGNISFKTIRQEIIRYLKSLSQPECNEKLVHPKKLFFCLIENQEERFVSQVMNLFEEITVDISDSDDLGAAEYSLLRASKLKNLHLHIQKKVFSEIHDPEYGSLENFKLDQKFSAINWTMLSILFCNLHVLDLGSCHFNKKVIEVLCNSLSPTPNMPLTVFKLQRLLCSFMTNFGDGSLFCTFLQIPQLKYLNLYGTDLSNDVVEMLCSALKCSTCRVEELLLGKCDISSEACGIMATFLINSKVKHLSLVENPLKNKGVMFLCKMLKDPSCVLESLMLSYCCLTFIACGHLYEALLSNKHLSLLDLGSNFLEDIGVNLLCEALKYPNCTLKELWLPGCYLTSECCEEISAVLTCNKNLKTLKLGNNNIQDTGVKRLCEALCHPKCKVQCLGLDMCELSNDCCEDLALALITCNTLKSLNLDWNALHHSGLVMLCEALNHKKCKLNMLGLDKSSFSEESQTFLQAVEKKNNNLNVLHFPWVEDELKKRGVRLVWNSKN", "length": 1004 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q675C0-1", "protein_name": "Taste receptor type 2 member 102", "gene_name": "Tas2r102", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPVIYSFATLLIHVEFIFGNLSNGFIVLSNFWDWVIKRKLSTIDKILLTLAISRITLIWEIYTWFTSVYGPSSFAIGMKLQILYFTWILSSHFSLWFATALSIFYLLRIANCSWKIFLYLKWRLKQVIVGMLLASLVFLPGILTQRTLEERPYRYGGNTSEDSMETDFARFTELILFNLTIFSVIPFSLASISFLLLIFSLWKHLRKMQLSSRGHGDPSTKAHTNALRIMVSFLLLYSIYFLSLLLSWIAQKHHSKLVDIIGIITGLMYPSAHSFILILGNSKLMQTSLWILSHLRCRLKGENILNPSGNQVTSCYIFCIANKSVS", "length": 327 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q68FP3-1", "protein_name": "C-C motif chemokine 6", "gene_name": "Ccl6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRHSKTAISFFILVAVLGSQAGLIQDTVKEDRPFNPTIIHQGFQDSSDCCFSYASQIPCSRFIYYFPTSGGCTKPGIIFVTRKRKRVCANPSDQRVQTCISTLKLGPRSGNSAIA", "length": 115 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6EKJ0-1", "protein_name": "General transcription factor II-I repeat domain-containing protein 2B", "gene_name": "GTF2IRD2B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAQVAVSTLPVEEESSSETRMVVTFLVSALESMCKELAKSKAEVACIAVYETDVFVVGTERGCAFVNARTDFQKDFAKYCVAEGLCEVKPPCPVNGMQVHSGETEILRKAVEDYFCFCYGKALGTTVMVPVPYEKMLRDQSAVVVQGLPEGVAFQHPENYDLATLKWILENKAGISFIINRPFLGPESQLGGPGMVTDAERSIVSPSESCGPINVKTEPMEDSGISLKAEAVSVKKESEDPNYYQYNMQGSHPSSTSNEVIEMELPMEDSTPLVPSEEPNEDPEAEVKIEGNTNSSSVTNSAAGVEDLNIVQVTVPDNEKERLSSIEKIKQLREQVNDLFSRKFGEAIGVDFPVKVPYRKITFNPGCVVIDGMPPGVVFKAPGYLEISSMRRILEAAEFIKFTVIRPLPGLELSNVGKRKIDQEGRVFQEKWERAYFFVEVQNIPTCLICKQSMSVSKEYNLRRHYQTNHSKHYDQYTERMRDEKLHELKKGLRKYLLGSSDTECPEQKQVFANPSPTQKSPVQPVEDLAGNLWEKLREKIRSFVAYSIAIDEITDINNTTQLAIFIRGVDENFDVSEELLDTVPMTGTKSGNEIFLRVEKSLKKFCINWSRLVSVASTGTPAMVDANNGLVTKLKSRVATFCKGAELKSICCIIHPESLCAQKLKMDHVMDVVVKSVNWICSRGLNHSEFTTLLYELDSQYGSLLYYTEIKWLSRGLVLKRFFESLEEIDSFMSSRGKPLPQLSSIDWIRDLAFLVDMTMHLNALNISLQGHSQIVTQMYDLIRAFLAKLCLWETHLTRNNLAHFPTLKLVSRNESDGLNYIPKIAELKTEFQKRLSDFKLYESELTLFSSPFSTKIDSVHEELQMEVIDLQCNTVLKTKYDKVGIPEFYKYLWGSYPKYKHHCAKILSMFGSTYICEQLFSIMKLSKTKYCSQLKDSQWDSVLHIAT", "length": 949 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6NXT2-1", "protein_name": "Histone H3.3C", "gene_name": "H3-5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSTPSTCGVKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFNTDLRFQSAAVGALQEASEAYLVGLLEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 135 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6P3W6-1", "protein_name": "NBPF family member NBPF10", "gene_name": "NBPF10", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVVSAGPWSSEKAEMNILEINETLRPQLAEKKQQFRSLKEKCFLTQLAGFLANRQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHSQERELTQLREKLREGRDASRSLYEHLQALLTPDEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDEDEDEDVQVEEAEKVLESSAPREVQKAEESKVPEDSLEECAITCSNSHGPCDSNQPHKNIKITFEEDEVNSTLVVDRESSHDECQDALNILPVPGPTSSATNVSMVVSAGPLSSEKAEMNILEINEKLRPQLAEKKQQFRNLKEKCFLTQLSGFLANQQKKYKYEECKDLIKFMLRNERQFKEEKLAEQLKQAEELRQYKVLVHAQERELTQLKEKLREGRDASRSLNEHLQALLTPYEPDKSQGQDLQEQLAEGCRLAQHLVQKLSPENDNDDDEDVQVEVAEKVQKSSAPREMQKAEEKEVPEDSLEECAITYSNSHGSYDSNQPHRKTKITFEEDKVDSTLIGSSSHVEWEDAVHIIPENESDDEEEEEKGPVSPRNLQESEEEEVPQESWDEGYSTLSIPPEMLASYQSYSSTFHSLEEQQVCMAVDIGRHRWDQVKKEDQEATGPRLSRELLDEKGPEVLQDSQDRCYSTPSGCLELTDSCQPYRSAFYILEQQRVGLAIDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAFDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEENHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLEEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQRVGFAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDEEEEEDQDPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGYLELTDSCQPYRSAFYVLEQQHVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDRIKKDQEEEEDQGPPCPRLSRELLEVVEPEVLQDSLDRCYSTPSSCLEQPDSCQPYGSSFYALEEKHVGFSLDVGEIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLSRELLDEKGPEVLQDSLDRCYSTPSGCLELCDSCQPYRSAFYVLEQQRVGLAVDMDEIEKYQEVEEDQDPSCPRLSRELLDEKEPEVLQDSLDRCYSTPSGYLELPDLGQPYSSAVYSLEEQYLGLALDVDKIEKKGKGKKRRGRRSKKERRRGRKEGEEDQNPPCPRLNGVLMEVEEREVLQDSLDRCYSTPSMYFELPDSFQHYRSVFYSFEEQHISFALYVDNRFFTLTVTSLHLVFQMGVIFPQ", "length": 3795 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6UGQ3-1", "protein_name": "Secretoglobin family 2B member 2", "gene_name": "Scgb2b2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLALLVTGELGFQRTEACIPFFGVYLGILSGNRIGLHTELAPFDPTVEEKEAFEKIQDCYEEEGLKAKTEDMKLMTTILFSSECRSYYTKEVLKNILVKFSKKLTHGS", "length": 114 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6YCH2-1", "protein_name": "TD and POZ domain-containing protein 4", "gene_name": "Tdpoz4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGELEAKSRGDTQSHEQKLCYRWTISNFSFFVEETEEYITSLVFSLEDNDKMTWCLRVYPTGVDEKNKDYVSLYLILLSCEKGSVWAKFEVCILNAKGEKCNTERIPSFSRIQPHQPFGFEKFITRDSFLSPAQVLTPDDKFTLLCKVSVLQDSFSISGQNPRPAIKVTRCTLENDVGELWENPLFTDCSLLVAGHEFRAHKAILAARSPVFRAMFEHEMEERLTNCVEIHDLDPQVFKEMMGFIYTGKVPHLHSHSMACDLLAAADRYGLEDLMVMCEDALCRSLSVENAAHTLIVADLHSTEHLKTQALDFIIVYASEVSKTSGWMSMVESHPRLVAEAFHSLASAQRVFWALPFKQLKWSLRPTQL", "length": 370 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q6ZMA2-1", "protein_name": "Olfactory receptor", "gene_name": "Or1o1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MNCTQSPGFILLGLSSDPEKWQLFFSIFLALYLLGFLGNLLLLLAIGADVHLHTPMYFFLSQLSLVDLCFITTTAPKMLEALWTGDGSISFSGCLTQMCLFGVFADMDNLLLAVMAIDRYAAICQPLLYPLLMTPCRCGVLACGSWGIAHCASLVYTLLLSQLSFHSNQEIPHFFCDSRPLLWLSCSDTHLNEFLMMVLSALLGISALLCIVSSYGCIFCAVARVPSAKGRRKALATCSSHLSVVLLFYSTVFATYLKPPSTSHSSGEVVAAVMYTLITPTLNPFIYSLRNKDVKNSLKKLLNMEKPLD", "length": 309 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q70YC5-1", "protein_name": "Protein ZNF365", "gene_name": "ZNF365", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MQQKAFEESRYPWQESFENVAVCLPLRCPRCGDHTRFRSLSSLRAHLEFSHSYEERTLLTKCSLFPSLKDTDLVTSSELLKPGKLQSSGNVVKQKPSYVNLYSISHEHSKDRKPFEVVAERPVSYVQTYTAMDLHADSLDGTRSGPGLPTSDTKASFEAHVREKFNRMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFVQLTQKKQEVQRRERALNRQVDVAVEMIAVLRQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAEKQLEYYQSQQASGFVRDLSGHVLTDISSNRKPKCLSRGHPHSVCNHPDLKAHFHPKGRNHLKKAKDDRASMQPAKAIHEQAESSRDLCRPPKKGELLGFGRKGNIRPKMAKKKPTAIVNII", "length": 407 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q71LE2-1", "protein_name": "Histone H3.3", "gene_name": "H3-3A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA", "length": 136 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q7KR10-1", "protein_name": "Probable cytochrome P450 12d1 distal, mitochondrial", "gene_name": "Cyp12d1-d", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MNTLSSARSVAIYVGPVRSSRSASVLAHEQAKSSITEEHKTYDEIPRPNKFKFMRAFMPGGEFQNASITEYTSAMRKRYGDIYVMPGMFGRKDWVTTFNTKDIEMVFRNEGIWPRRDGLDSIVYFREHVRPDVYGEVQGLVASQNEAWGKLRSAINPIFMQPRGLRMYYEPLSNINNEFIERIKEIRDPKTLEVPEDFTDEISRLVFESLGLVAFDRQMGLIRKNRDNSDALTLFQTSRDIFRLTFKLDIQPSMWKIISTPTYRKMKRTLNDSLNVSQKMLKENQDALEKRRQAGEKINSNSMLERLMEIDPKVAVIMSLDILFAGVDATATLLSAVLLCLSKHPDKQAKLREELLSIMPTKDSLLNEENMKDMPYLRAVIKETLRYYPNGFGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWLRDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNFHVEFNRDASRPFKTMFLMEPAITFPFKFTDIEQ", "length": 521 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q7M715-1", "protein_name": "Taste receptor type 2 member 117", "gene_name": "Tas2r117", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKHFWKILSVISQSTLSVILIVELVIGIIGNGFMVLVHCMDWVKKKKMSLVNQILTALSISRIFQLCLLFISLVINFSYTDLTTSSRMIQVMYNAWILANHFSIWIATCLTVLYFLKIANFSNSFFLYLKWRVEKVVSVTLLVSLLLLILNILLTNLETDMWTNEYQRNISCSFSSHYYAKCHRQVLRLHIIFLSVPVVLSLSTFLLLIFSLWTHHKRMQQHVQGGRDARTTAHFKALQTVIAFFLLYSIFILSVLIQIWKYELLKKNLFVVFCEVVYIAFPTFHSYILIVGDMKLRQACLPLCIIAAEIQTTLCRNFRSLKYFRLCCIF", "length": 330 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7M719-1", "protein_name": "Taste receptor type 2", "gene_name": "Tas2r115", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MCAVLRSILTIIFILEFFIGNLGNGFIALVQCMDLRKRRTFPSADHFLTALAISRLALIWVLFLDSFLFIQSPLLMTRNTLRLIQTAWNISNHFSIWFATSLSIFYLFKIAIFSNYLFFYLKRRVKRVVLVILLLSMILLFFNIFLEIKHIDVWIYGTKRNITNGLSSNSFSEFSRLILIPSLMFTLVPFGVSLIAFLLLIFSLMKHVRKMQYYTKGCKDVRTMAHTTALQTVVAFLLLYTTFFLSLVVEVSTLEMDESLMLLFAKVTIMIFPSIHSCIFILKHNKLRQDLLSVLKWLQYWCKREKTLDS", "length": 310 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7RTZ2-1", "protein_name": "Ubiquitin carboxyl-terminal hydrolase 17-like protein 1", "gene_name": "USP17L1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGDDSLYLGGEWQFNHFSKLTSSRPDAAFAEIQRTSLPEKSPLSSETRVDLCDDLAPVARQLAPREKLPLSSRRPAAVGAGLQNMGNTCYENASLQCLTYTLPLANYMLSREHSQTCQRPKCCMLCTMQAHITWALHSPGHVIQPSQALAAGFHRGKQEDVHEFLMFTVDAMKKACLPGHKQVDHHCKDTTLIHQIFGGCWRSQIKCLHCHGISDTFDPYLDIALDIQAAQSVKQALEQLVKPEELNGENAYHCGLCLQRAPASNTLTLHTSAKVLILVLKRFSDVAGNKLAKNVQYPECLDMQPYMSQQNTGPLVYVLYAVLVHAGWSCHDGHYFSYVKAQEVQWYKMDDAEVTVCSIISVLSQQAYVLFYIQKSEWERHSESVSRGREPRALGAEDTDRRAKQGELKRDHPCLQAPELDEHLVERATQESTLDHWKFLQEQNKTKPEFNVGKVEGTLPPNALVIHQSKYKCGMKNHHPEQQSSLLNLSSTTRTDQESMNTGTLASLQGRTRRAKGKNKHSKRALLVCQ", "length": 530 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TMR7-1", "protein_name": "Monocarboxylate transporter 7", "gene_name": "Slc16a6", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTQKNSKLCSRANVYTQVPDGGWGWVVAASFFFIEVFTYGVIKSFGVFFNDLMDSFDESNSKISWIISICVFIMTFTAPLSTILTNRFGHRLVVMGGGLLISVGMIAASFSQRVYQMYISIGIVSGLGYCFSFLPTVTILSQYFDKRRSMVTAVASTGECFAMFAFAPAITALKEHIGWRYSLLFVGLLQLNVMVCGALLRPIIIKGPGSPKAIPLEPRREVQYMLENEKTRTSIDSIDSGVELTTSPKNVPSEAKREQEVRVEQQQTLVVGPKHSQKRAPLLDFSILKDRSFICYTLFGLFATLGFFAPSLYIIPLGISLGIHPDRAAFLLSTMAIAEVFGRIGMGLVLNREPIRKIYIELICVILLTVSLFAFTFATEFWGLMLCSVFFGSMVGTIGGTHIPLLAEDDVVGIEKMSSAAGVYVFIQSISGLAGPPLAGLLVDQSKIYSRAFYSCAAGMALAAVCLALVRPCKKGLCQNPHSGENQTDGHRGKALQDIPEDFLEMDLGKCEPRAHMKMDPV", "length": 522 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TN50-1", "protein_name": "Mas-related G protein-coupled receptor member B8", "gene_name": "Mrgprb8", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSSIPDPEADLIQLNGSYHTETSPCVIESRVMILLSIIIAFFGLAGNAMVLWLLAFRMRRNVFSVYILNLAGANFLFLCTHTAFSLEKIIVLFHSVHIHIPLLFYTLSTLAYLAGVSMVTAISAEYWLSGIWPYWYQGQRLKHTTTVICTGLWGLALLLSLLEGKSCGFLGSTYNQDVCWKLDFIIVAWLLVLFAVLSRSIQVLLVRIFCGSQRTPVTKLHVTIVLTALVLVICGFPFGIIFYLLYWTTEVYYIMPCNSFHETILLLSYINSCANPIICLLVGSIRHCRFQCGTLRLLLHRAMQDIPEEEGEELEEVVGERVQNSIP", "length": 328 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7TPX8-1", "protein_name": "Oogenesin-2", "gene_name": "Oog2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNFYSPPTLMELARQCLLRDEYLAISALKDLPNMMFPVMFKEAFIDGHTKILTAMIPVWPFPYLSVGTMLKNLNLDTLKAVLEEIDILISKPVFSSRCKLREITLSHDLVVVWAGSHEVEGLPEFMEQEKPVENSPGYGTKNKLKVTTELQFMEGHLDECSTYLLQWAYQREDSIHLHCRKLKIYGLTKAAVIEMFKIVHAEYIEDLELSCLCLEYLDFLNPYLKQMSNLLSLTLDEIIYTLNIDDYRNLNEEKVITVISHLPTFHHLQELYVHGVIFIECLRCLKKPLEVLSFTDCDLSQSDLDYLPYCLNIFELRSLHLTDVRLSNLLLEPLGFLLERVRHTLKSLQLMSCEMGETHFNALLPALSQCYQLTVVNFYGNELSLLFLKKLLHHTAKLSQLADELYPAPQECYDNRDVVLSHRLENFCSELLDILRAIREPKKVTFGTIKCSKCGGSYVYDLETQCCFFEKNPPWA", "length": 476 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TQY5-1", "protein_name": "Olfactory receptor", "gene_name": "Or4k38", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDSNRTVSSEFIFQGLCSSRQLEIFLLLPFSILYLMAVVGNLFVVILIIIDHHLHSPMYFLLANLSFIDFCLSSVTTPKLTIDLLKENKTISFVGYMRQIVCVHFFAGGEMVLLVTMAYDRYVAICRPLHYSSIMDRQKCIWLVVISWIVGFVHAISQMLLILDLPFCGPRVIDSFFCDIPLVMKLACMNTDTLEILINADSGILATTCFILLLISYTYILLTVQHRSKDGSSKALSTCTSHIIVVLLFFGPIIFIYLWPVSITWVDKFLAVFYSVITPLLNPAIYTLRNKDIKNAIKKLISHK", "length": 305 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TR72-1", "protein_name": "Olfactory receptor", "gene_name": "Or8k25", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEKYNLTIVTEFILVGITNHHEFQVPLFGLYLIIYLTSLVDNLGMIILTIVDSRLQTPMYFFLRHLATTDLGYSTAVGPKMLRNFLVDQNIISFYACAIQSSFFGMFIVCEFFILSAMSYDRYVAICKPLLYTVIMSQKACWILVTIPYLYSIIVSLLVNIKIFTLSFCGYNVISHFYCDALPLLTLACSNTHEIEAIILIFSAFNLLSSLLIVIGSYLLILMAILRINSAEGKWKAFSTCGSHLTVVIVFYGTLIFMYLQPTFTHSIDTGKVISIFYTQVIPMLNPLTYSLRNKDVKDVLKKPMEKVHNLFS", "length": 313 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q7TSF0-1", "protein_name": "Desmoglein-1-gamma", "gene_name": "Dsg1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDWHSFRIAALLLTSLVVLEVNSEFQIQVRDHNAKNGTIKWHSIRRQKREWIKFAAACREGEDNSKRNPIAKIHSDCAANQPVTYRISGVGIDQPPYGIFIINQKTGEINITSIVDREVTPFFIIYCRALNAQGQDLENPLELRVRVMDINDNPPVFSMTTFLGQIEENSNANTLVMKLNATDADEPNNLNSMIAFKIIRQEPSDSPMFTINRKTGEIRTMNNFLDREQYSQYSLVVRGSDRDGGADGMSAESECSITILDVNDNIPYLEQSSYDITIEENTLHSQLLQIRVIDLDEEFSDNWKAIIFFISGNEGNWFEIEMNERTNVGTLKVVKPLDYEAVKNLQLCIGVRNVAEFHQSIISQYRLTVTLITVTVLNVVKGCVFQPGSKTFIVDSRMEANHTVGEFLATDCETGQATNKFKNVRYRYVMGNNPENLLVVDSGIITLRNRVTMEQYERLNKRYEGTVLSIHDSLQRTCTGTIIMVLCGFWTTTEHPTTSTEKPVTLSITPNVDNVHFGPAGIGLLIMGFLVLGLVPFLLISCDCGGAPGGGAGFEPVPECSDGAIHTWAVEGPQPGGITTICVPQMPPGNANVIEYIDNSGVYTNEYCGREMQDLGGGERTTGFELMDGVKTSAAPEICQEYSGTLRRNSMRECRDGGLNMNFMESYFCQKAYAYADEDEGRPSNDCLLIYDIEGVGSPAGSVGCCSFIEDLDESFLDTLGPKFKKLADISLGKEIDSYPDPDPSWPPQSTEPICPQHMEQLASGHPSISPHFGKTTVISENAYPSGPGVQHPMLIPDPLGYGNITVRESYTTSGTLKPSVHFHDNQQASNVVVTERVVGPISGADLHGMLEIPALRDGTNVIVTERVIAPGSSLPNSLTIPNPRETSNVVVTERVIQPTSGMIGNLSIPP", "length": 911 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q803M0-1", "protein_name": "Protein phosphatase 1 regulatory subunit 3B", "gene_name": "ppp1r3b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MPIELAMSLYLSSDEFLNPRASKYSRPLQPCLNQCKSSKLSFSSLKEQSEFNGVSRALMIPGRAKKHVSFADHKGLALTVVKIFSEFDDPIDIPDNIDNFFTSSLTVSEGKDKLTLDFDQPSADYLKFRQRIENDHVCLEHCMLKEKSIMGTVKVKNISFEKSVKLRITFNTWKNHTDVECQYVKDTYTGSNRDTFSFEASLPEQVPSHERIEFAICYEVNGDTLWDNNQGKNYRIIQSALRKSSNESNGGHQQYSQSDWDIHFDRYGSPRCSRGIFPHWPSYVGYEDIGPYY", "length": 293 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q80SW5-1", "protein_name": "Embryonic testis differentiation protein", "gene_name": "Etd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDEKNPEAVPRPPEQNTELVPPKKSKSKKPANILIYLIDRHLGRPRNDMDLFEWVWTLK", "length": 59 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VJ6-1", "protein_name": "Zinc finger and SCAN domain containing protein 4C", "gene_name": "Zscan4c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASQQAPAKDLQTNNLEFTPTDSSGVQWAEDISNSPSAQLNFSPSNNGCWATQELQSLWKMFNSWLQPEKQTKEQMISQLVLEQFLLTGHCKDKYALTEKWKASGSDMRRFMESLTDECLKPPVMVHVSMQGQEALFSENMPLKEVIKLLKQQQSATRPTPDNEQMPVDTTQDRLLATGQENSENECNNSCNATEANVGESCSGNEMDSLLIIQKEQHPEHEEGNVVCQFPHGARRASQGTPSHHVDFPSAPTTADVPMEEQPKDLSRENISEDKNNCYNTSRNAATQVYSGDNIPRNKSDSLFINKRIYHPEPEVGDIPYGVPQDSTRASQGTSTCLQESLGECFSENDPREVPGLQSRQEQPISDPVLLGKNHEANLPCESHQKRFCRDAKLYKCEECSRMFKHARSLSSHQRTHLNKKSELLCVTCQKMFKRVSDRRTHEIIHMPEKPFKCSTCEKSFSHKTNLKSHEMIHTGEMPYVCSLCSRRFRQSSTYHRHLRNYHRSD", "length": 506 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q80VT8-1", "protein_name": "S100 calcium-binding protein, ventral prostate", "gene_name": "S100vp", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAQNLTSTEQEIMELLMILQEFSVKKIDKLDVQEVKRLFREELPNFLKAMDEATKNKILNDKGKEMPFDEIWDMIGRMALEYRKKNSNALKD", "length": 92 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q80XZ1-1", "protein_name": "Polypyrimidine tract-binding protein", "gene_name": "Smptb", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRNSPPAAEGNGSKRFKGDSWGTRDPSRLVHILRLPSCVTEGEILCLALPFGEVSNLLFLRAKNQAFVEMSTEESANTMINYYTWMPPVLRGQPVHIQFAHYRELKVSSSPSQEISLSQAGDSREATASSLVAVPGQAAASGQTAVPSQLGAQPCLPPEDSYQAGTVALAPPASAVDTELVVAWQSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKLFLDGQNIYDACCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPSPVQVQNMASALPAPAMSSASPYASIALPHTFAIPQAAGLANPEVFKTLHPQAIQEVAMASSSSSSSTAAAAVGAAEIAAAAVPGAEGSMVTSGSPGVGSPVLLVANLNQEKVTPRSLFILFGAYGDVHRVKILFNRKENALVQMADGSQAELALRHLNGHKLYGKALCILLSKHQSVKLPREGKEDQGLTKDYANSPLHRFKKPGSKNFQNIFPPSATLHLSNLPSLVSEEELKNLFSSNGYAVKAFRFFPKNHKMALIRMGSTEEAIQALVDLHGHLLGQNHHMRVSFSRMTI", "length": 588 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q810J1-1", "protein_name": "Pregnancy-specific glycoprotein 22", "gene_name": "Psg22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVSSELLSNGWTSWQRVLLTASLLTCWLLPITAGVTIESVPPKLVEGENVLLRVDNLPENLRVFVWYRGVTDMSLGIALYSLDYSTSVTGPKHSGRETLYRNGSLWIQNVTREDTGYYTLQTISKNGKVVSNTSIFLQVNSSLFICGRPSPPALLTIESVPASVAEGGSVLLLVHSLPDNLQSLLWYKGLTVFNKVEIARHRTVKNSSEMGPAYSGREIVYSNGSLLLQNVTWEDTGFYTLQIVNRYWKMELAHIYLQVDTSLSSCCDDFNSVQLRINPVPPHAAEGERVLLQVHNLPEDVQTFLWYKGVYSTQSFKITEYSIVTESLINGYAHSGREILFINGSLLLQDVTEKDSGFYTLVTIDSNVKVETAHVQVNVNKLVTQPVMRVTDSTVRIQGSVVFTCFSDNTGVSIRWLFNNQNLQLTERMTLSPSKCQLRIHTVRKEDAGEYQCEAFNPVSSKTSLPVRLTVMNE", "length": 475 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q863C3-1", "protein_name": "Gastrin-releasing peptide", "gene_name": "GRP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRGREVPLVLLALVLCLAPRGWAAPVTAGRGGALAKMYTRGNHWAVGHLMGKKSVAESPQLHEEESLKEQLREYAQWEEATRNLLSLLQAKGARGHQMPPWEPLSIHQPAWDSEDVSNFKDTGPQHEGRNPQLN", "length": 134 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q869X2-1", "protein_name": "Probable polyketide synthase 17", "gene_name": "pks17", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MTFNNIKDENNDDIAIIGMGFRFPGGGNNPYQFWNQLSNKMDGISKIPTEKWSRSFYEQKYINNEYGGVLKDEEWKNFDPLFFGISPKEAPIIDPQQRLLMTTLWEAFEDANIKPSTFRGSDTAVFIGMMNTDYQRCQFRDISYVNPYITPGTAGSFISNRLSFSFDLRGPSMTLDTACSSSLNAVYLGCQAIANGDSKMAIVGGVNGIFDPCFSMTFSGLNMLGHKGQCRSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNIIQPSMKAQGENIEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRVVTDEIQFPINKLINMGINCFGLSGSNCHMILSEAPINYDELLKTTNNNSTSSSSNDDKKEYLIPFSANCNISLDKYIEKLISNQSIYKDTILFKDFVKHQTISKSNLIKRKVITASDWDDFLNKRNETTSTSSLTSTISAPASSTPVIYVFTGQGPQWRDMGKALYETESVFKDAIDHCDKLLANYFGYSILQKLLSLESEDSPEIHHPILAQPSIFLIQVGLVALYKSFGISPSIVVGHSFGEIPSALFSDVISLETAVKIVYYRGLAQNLTMGTGRLLSIGIGADAYLEKCALLYPEIEIACYNDPNSIVITGSEQDLLGAKSTLSAEGVFCAFLGTPCSFHSSKQEMIKEKIFKDLSDLPESNVPCVPFFSTITGSQLSHKGFYNVQYIYDNLRMPVEFTKAISNIFNFIEENESYKNAIFLEIGPHPTLGFYIPKCKPSNSTITSKPIIVSPLHKKKEELTQFKLAISTLYCNGVEIDFASGQQLLPTSSSSGGGDISSFKESTNKLPRYQWDFEEYWDEPNQSKMVKRGPSNNLLGHDQFAGNTLMELFIDIDKSAHQYLKGHKIKGKYLFPGSGYIDNILRQFNGQDITIFNLEFSNPFFLKDGVQHHLQTSITPTTKGEFKVEFFIKDNRNSTKWTKTSNGRIGLFKHNPKNNKLDIEKLKSQCSFTTLTKSEVYNKLLLLSLPYGPTFQRVESCSIGDGCSFFKLSMSPCSEFDKDFLNPSIIDCAFHGLLVLSEGPQEIVFDRLQDMKFYSSNVPSTRPQFIYAFAKFDKIEGNSTHGSLNIILEDGTLLISIKNVKCTSLIRLKKQSIKYPSQNVYSHHWQSKDSPLTLIENQLIEEKSSESKINFEKLLNDKLFNYYLIRLLNQSIKSEFIEFDYKTSTVDTLDIGSKNAKLLEKIQSILNPIDSLDQSIDITSLKQAIIVKSSFKNEIKLVEKSIKRIVSLLKGGESEHFSPSNPSSPNDTPRNNSNNCSSKNNAASSDDADDDTNNEETINQLNNEPFNFSNSQFISNQNQLISKTIVNSFDRLINSIEIGEKKLIKIIDLSSIYQNYQLSKLLLLQLNQLLINLSNNNNIEIEYTIPSNTKNIDSITEETKSISNVLNIKYRSFDLQDDLESNGYLNSNYDLIITSLLLVSTNSIDSNEVLSKLYKLLLPKGQLILMEPPKGVLSFNLLFANDFKQSLEIKSEQEIKSLIIYCGFTKIETNLNTKDDEEQQQPPPPSILIVQAEKRDIESMSLTFSSDPKSLNSSYSNCIFIVSKEQKENPTSYIQEYFDITEFFCQNATIIEADDSELLTKTIESGVGKNDIIFFLVSLEELTIENYKQVTMQYTLVNQILLRNNLSTRFALLTYDSQNGGKNYLGSSLIGTFRYFLEFRSLNIFSIDVDKDSIDNLTLFLRLVDLSTIGDRETIVRNNKIFVQKIFKEPKLLSPSNNYEKNTNNLFLYSNSNLDFSFQSKEKLLHGCVEIKVMSTGINYKDSLFYRGLLPQEVFSKGDIYSPPFGLECAGYITRVAPSGVTRFKVGDQVVGFASHSLSSHVTTHQNKIVLKPENISFNEAAAVCVVYATSYYSIFHIGAFIADKESILVHSATGGVGLASLNLLKWKRNQLKKHGNSEISNDASIYATVGSKEKIDYLQEKYGDLITAIYNSRDTEYCDEIKQQSAQGGVDLILNTLSGDYLSSNFRSLSQVGRIMDLSVTQLVENDSLDFSNFKYHVGYNTIDLDRATKYNSKIIRDILTEVFDAISDGSLENIPVKVFPAIQVKTAIEYINERVHIGKIVVDFENFEQDILKPALQEKENPIQLNKVKKLEHTCDTLNNTILITGQTGIAVHILKWIISGSVLNSNKSQQQVTDFIILSRSSLKWELENLINQTKHKYGDRFRFHYKSVNIADLNSTRTAIDQVYSSCKNVSPIKSVLHFATVYEYILPENITQTVIDNTHNPKAVGAINLHNLSIEKDWKLENFILFSSIGAIIGGSKQCAYSSANLVLDSLSNYRKSIGLASTSINWGGLDAGGVAATDKSVASFLEGQGILLVSLSKILGCLDSVFQPSNSHLSNFMLSSFNIDNLLSSAPQMKRKMDHHLTNYKTSSASSDDSLGDSGSTQAKVISTISELLSIHPSKLNLDTRLKDYGIDSLLTVQLKNWIDKEFTKNLFTHLQLSSSSINSIIQRISSKSTSTSTPNPTNTSKQTATKKT", "length": 2604 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q869Z5-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSHLTPKPNVLNVYGAGTPNFVKVQILLEEKNIPHVYHKIDFSKNEQFDPEFLKFSPNNKIPAIVDNTVEPNGISVFESAAILMYLSEKHQFTDLYADFKTDPALHAKHLEFLFFQMSGVGPMTGQLGWFLRQPEPKNTQAIERYSEEVKRLYRVLDKILSTNTWVAGEQYSIADISLLGWALYFLKGYYDDHITREQFPNVYRWLDLAAKRPAIIKVLETIQPKQK", "length": 227 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AE3-1", "protein_name": "Probable polyketide synthase 9/36", "gene_name": "pks9", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGNLKNINLKEKGVAIVGIGFRIPSGNNENSISSPDDLFNNLKNGFDGVSSTSERWSDNFHKLGEISSPNAGLLPFKEWKSFDPLFFGINPSEAPLIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHTNKHQDSVLKNAIAQSTSAISNRISYCFDFNGPSLSIDTACSSSLNAVSQGYHSILNGTSNMSIVGGVNLILDVDIIKAYSILSMLSKTHGKCKTFDESGDGFTRGECVGVVVLKNLQDAVKDGNRIYCVINGSSSNVDGNGNMDKVNFYSPSKQSQFNNINSAFKSTNDKLSINDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVASLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNKRNNEKPVSMMINNFGVTGSNCCLLISEFKNNNNFKENINLESQSVNDRVLIPFSANSSNSLNQYQSKFKNIINNQFNFIDFTANQIYSKSNFLYQRSVVIASNSNELFENISNKKQIQTKNSIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGFSVWEKVKTIKDDDLTSIHDPIFAQPALCMISVSLFELYYHWGVNPSFILGHSLGEISASYCSGMIDLDTFCYTVYQRSIAQSKTNGCGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTTMLGSLSSFHTSSQQCTKDSILQLNIESNQPKVPIFSTVTTNLFNESNRFNSQYVYDNIIKPVKFTQTISNIYKHIESNQLNNEIVFIEIAPHPTLLFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQSINLPLYQWDEELYFTQAQTLEQHRKEGPPIDHLGTSNSYNSPFNNSYRTSIDIKNKPFLYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQYLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHGNDIPPKYNIKEIIENKCNLSKLTKNELYTHIKSKTGLNYTGVFQGVTECYIGGDCTLSVVSLESQTNSFLNIPILDTCLHGMIGLSNDQCQIVFDKAIGFKYYSSNIPANLKDYKDSVYVYSHLKSKSVDSFFGSIIVMLSDGSVLYEIEEVVCKSLIPIKDSLKIEYPNDELYKVHLQSKDSPIPTPSSFKSIIYENDFFHSALNIPEDLFKYISTLFYKDIIKRCPEININKINSHSVNEIISSFSKISKHERLFRFVFETIKENGILNSLEENDDAYFEFNEVIIKSSRIISKLLFPLESDNDNEDLPQSLFQNGLMDKIYKCRYLRKKNQMISHVIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIIALLQENPNYQVEIEYTWSDISPAFIADAKNKINKIINDAAITNGFNVIYRPLKIDESLIETQSINPSYYDFVIMSNVLHVVKNIKQAVEQMYQLLTPNGQLLFLEPPYKSVLNDSIVGSFEQWWSFTDTDIRKDRCSMSQQSWCQLLKTCNFKDIAMSKECIFVGIVIHAQKPPISLLNSQPKRDNIIIYGGGNPIFVENIKLYSNSKSLIQIETIQEFNQLLSQSTITNDSIIYFIKTLETLSLDNFKQITLEYIEINRKLLQINSLCKHVLIVSDSRKTNYLASSVVGAARYFDEFQQLKLNTLDFDYDSTQNYINSNNKDMVQFINILTDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFENQNNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINYKDYLNFSGSNSNGDDNTGLPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSHIVTNYKKIQIKPSNLSHNEASSIPIDYLTSFMSLFNIGSLNIEDNESILIHLGSDGFGLSTFEILKWKGFNSNLFVTVNSYETKRYLQDNYGDFITGIYSNTDKSYVTEINKKLIKLGSKKKGVDLILNTLPSDFMDSNFKLLAKYGRIIDLTSNHLNQSEFLKNINFKYNHGYHNFELSLIQKNKIHKCLYEISNAFENGELKTIPIKEFTNLNIKDAIKYITNNKIEKITVSHDHEIYSDIIYRSLDEKEFSILKSNYQINSNNLGKNILVTGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINETKLSNNNIKFHFKSVDIGDSEQVDNAINEILNENQQITNIDSIYHFAFQQITCKVQEINMKHLDISHGAKSMGAINLHNQSIKRNWKLINFVMASSAISLIGSTDLCTYVCANALLDSFSKYRESLGLPSTCICLGAIESTGFVSKNESVSVFLDGGGFHPTPINQVLGLLDLQIQNAGKFTNSMLSNFKPSKFKNNQQTSLFLKFDYLMNLKNNSEETKIENTGNKNIDELFIEKVSELFSMDESKINKNLRLIDYGADSLIIVQLKNWIDKEIGINLITIQQLQNNTISTSMKMILNSLMKNNQNIDDNNKDLPSNRIDYWKNEMKFEESIKPISNEIQSRNNSEKIILLTGTTGFLGGFLLFNMVRLDSCKLIYCLIRNKSKSNNPLDEIINNLKYHQLYEKLNQSQISKIIPIIGDLSMNKLGLSNDDYETISKNVNLIINPGADINQKSSYQDCKLVNVNGVKEIIKLSLSSLKQRIPIVNFSSFSVFFNQSLDKNFDESVLPSIDNIDNLPTEYMKSKVVGEYILLEASKKYNIPSILIRPPSIFLNPETGIGHISDFSLLSIQSCYELGYYPNQFENDFILINTITWLSNNITNIIMNDNCWTDSKMNIYNVHGKQIQSSLIIKPLEKHFNCKHINTNDWIDMVNNSNKKSCIKLKSFHSLDIILKSENNRYKPNENQSISLSTKSLLESMGSYNTDLEITDKMIISHINQIFNLNETI", "length": 2931 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86AF8-1", "protein_name": "Uncharacterized protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MFSKFSIKENKPKKVKSNSSKGFNNNEINSTNNNNNNNNNNNNNNNDSDNFINNNDSNNNNNFNNNNNNNSNNINNKTEDSNDISLLINQFIGSSPAPSTCSGSDKFSIKPKKIVTPSKRKNSTSGSDIIDFNNCNNNNNSKSNSDSNNNKYNNSNSNNNSCNNTNNGNERKMKGYDYGNNNSNNNYSSSSRDYNSNNNSSPRDYNNNNNNNNNNNNNNNNNSNNNSPRDYNNSRDYNNNNTNNNSSPRDSNSNNNRNSSSRDFSNNNSSPRDYNNSRNSNNSFLNNNNNNNNNSNNSNDNSPRDYNYSSSNSSPRDYNNNNDTFSKKRNNVGNSILEIKSNPTSPRIKPIMVWPRSSPRIVNKLPPVQSLVDLTEIEMIDDNNNNNNNNNNNNNNNNNNNNNNNSNNNNNKSGSNNNFSDSDSDKDNYNNNNNTNNNSFNSDSDNYNNSNNNNSNSNSNSNSNSNSNSNNNNNNNNNSNNNNNNNNNNNSNNSNKSNNNFSNIKILEKRRKSINEISDNLTTRNIEEIDSKMAHEFEHPFLEKLIFAGQRPPFVECDDYFLKRYKNQFQYYLDISMKSIINTRDIGEGDDDDEINSVPFKCTLCSYEYDEENNNENTNGFIDEADKIYNRSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNSNNNNNNNFYDKKYFKNNYFQHLLSKHLNQIKAKGIQDTNVYNDEANIPLGSKKCDHLECSEIILKNEFTKHIKKLHHHHKDEDIDICPRCKILKKSIQKRIVKFSKKKQEKDDDNNSKPVSNKVATISHNPSPNNIDKDINNNNNNKNNKNNTNNLENDNNDNSSNNNYLENEEEPEIVFQDIKPNNNNNNNNNNNNNDDNNNDNNDNNDNENNNDNNNDNENSNNNNNNS", "length": 901 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86BK9-1", "protein_name": "Mediator of RNA polymerase II transcription subunit 22", "gene_name": "Dmel\\CG32971", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDSKDEALLKSFKTQLKDNVLSMLLNFEELLKLVSPRTPGQITNDTEQELNAFEMQVRAGNFVRAGEALIKLVHDVKEYQIIYDYSNIEEEMDRQSEAMHAKVTEYDQTLIKMVKDLEEELSELEYEYYEKSGGPDLDSKDLLV", "length": 145 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q86IJ5-1", "protein_name": "Uncharacterized protein DDB_G0272718", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MPPHGHHHHHHGHHGHHEHITITPVYAPPQVVQPIYAPPPVVQPVYVQPPVVYPQATIVLETGHHHGHHHHHGHHGHHDHHHHGHHGHH", "length": 89 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86IV6-1", "protein_name": "DNA replication ATP-dependent helicase/nuclease DNA2", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNFFEKKNNNNNNSSNNNNNNNNNKNNNNKNLDKNNSSDRNNNNNGDKNNLKPTQKSLIDLWFQVDDEDEEYELSSLSNDGGSSFNSFKVNNRDTSIGSDIYSKTITPSSLALSTSSLISSTLTPPTQSPPFSKKNEKTSSFLNSPSSQKSKSNNSNVKEKLSPQYSSSSQLSDFFKKKKRPLLDNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTISSLNTNSNNNSSGSSNGSSSSSSGGGNKSSNNKKQKVSQSTSSTSLKEKQSQQSILSYLNPTPSLPTPIFDKPIERSDSNLATSSFSKLNFDDIPLDDEELSQKINTPSPKLILKNTFSSTPTQKSPSLSSTPPNKIKITDKKLPNSSSSSSSPPPSSAKSKLSHRSQSSPLSPLITNLNQNKSNEFDDINFNFNIPSPLKEINNKPNIKSNSKETLTPLTQIFHSSSPPPSIIIESSPSVCFSPTPTKNQSPTLSNLSPTFSFLSDTSPVKSPSQLFEFTFDDPLSPKLISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNTFISKNNLINLFNEQSNQENVSTTTTTTTTTTTSTSTNNNNNNRYERVLIINVFYEVTQIFNNSNDKIHKKTLSGFSESIGESREIQLLDEWIYTPVRPGDIVNVIGEFDDNGEIIINNIQNLLILHPDILITGTELGGSLTCTRRSVLKEQIRVGNSNSSTVPIFGSIVHEIFQECLKNNRFHLDDINTFKQEIIGKSTFQLGLSSLGETQDTALNHLENWLPTIDKFAKTFILPSSSSSSASSLKKNLIEINSEKWHLSISKILEIEENIWSLMYGLKGKIDSSLEIKLVKQQQDEKQSKQSKQSKKKKQQTTSPNNNNNNNNNNNNNNNNNNNNNNNNNNGPTTCYLNVPFEIKTGKPYQIPYISHSSQVLIYTLLMNDRYDQDIEMGILYYLKSQEFKSVGLNYGLLHPILFERNQIRSLIVSRNLLAYFLNLNSQPLLKPNPILPEMLRDYHSCTKCYSIDPCVLYHKAIENGDQFTSSLGDLFLEKTNHLSSIHINYLKNWNKIISLEYSIKNNKRKLIWNKSRKFGEKNNSCIGELILISEEYSEITETFSYRFRVNPDKLLNSSISEGDYLLISVEDKYYGMGSGQLSNIINDIITITCREKLSEPPSLLSDYTTPNCNNNDPSYFGNYRNKPLIYIEYEDADQQQQQQQQQQQQQQQQQQQQQQQSQKQQKQKQPNFTQLRGLNNYVNNSKLTPFKWRVDIDEQLSGLSIVKSNLFNLFLKENQKLRSLIVDLEAPIFDKLEQENYWKSIDFQNDYPLLNIDQRNAIIKTLSAKDYSLIHGMPGTGKTTLVISLIHILWRLGKKVLITSFTHTSLDHLLLKFNKQYPNIEMLRVASSLNQIDPSLHRFTLEKQSFGNITQSKQYLERQQLVATSCLGINHQCLLKMQFDYCIIDEASILSQPISMGPILKCKSFVLVGDHHQLPPIVNNKEAGKLGLDISLFKQLSTSHPSSVSNLYHQYRMCNSIMSLSNHLIYNNRLVCGNQSISNLSLQTNYYHNNNNTTHIDLLDHINNWPQIICNPNSSVIFVNTDQLNNSTESSNGDLFYNQTEANIVAILTNCLINKLNINQSQIGIITPIRFQLNFIKKSILKYLSIENNNNNNNNNNNSNNNNNNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNQNNNQNYLKKIENLDILTIDKFQGKDKDCIIISFVRSNEKKEIGELIKDWKRMNVAFTRAKKKLIFVGSKSSLSKFPFFLDFFEFLDSKNWIYNLNNKIQF", "length": 1838 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86JI5-1", "protein_name": "Probable polyketide synthase 5", "gene_name": "pks5", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDMKLNDIENENFINQMKGVAIVGIGFRIPSGNSENSISSPDDLFNNLKNGFDGVSSTSERWSDNYHKLGEISSPNAGLLPLNEWKSFDPLFFGINPSDAHHIDPQQRLLLKCTWEALEDASIDPISIRGTNTSVFIGSSTIDYLHANKHPDLILKNAIGFSPSTLSNRISYCFDIHGPSLSIDTACSSSMNAVTQGYHSILNGTSNMSIVGGVNFVIDVETIKGFSYLNMLSKTHGKCKAFDESGDGFTRGECAGVVVLKKLDDAIRDGNRIYCIINGISSNIDGNGIADKANFYSPSKQSQFNNINLAFKSTNGKISVNDIQYIEAHGTGTKTGDPIETEAISMAFKNRDKSTPILIGSIKSNIGHCEAGSGVVSLIKCCLMFKYQCFLPNIHFKNPNPLIKFNEWNLKVVTSPIPFNRNNEKSVSMMINNFGVTGSNCCLLISEFKKQDYESYENNIGSINKNILVPFSANSPKSLDQYQSKIKNIINNQFNFIDFANNQIYSKSNYLYQRSVVIANNSNDLVNKILNKKHIQTKNPIISNMSFKGKNPITIFVFSGQGSQYPKMALELYNNEVIFKKSIDLIDSKLSKYYGYSVLEKLRSIGDDDTTSIHDPTIAQPAMCMFSVSLFELYKHWGVNPSFILGHSLGEIPTSYCSGMIDLDTFCYTVYQRSIAQTKTHGNGRMLSINISDEEFKSMYSQKYPQIEIACYNSPQSIVVAGNESILNEISKELKEKEIFTAMLGSLSSFHTSSQQCTKDSILQLNIESKKSKVPTFSTVTTNLFNESDPFNSQYVYDNIINPVKFTQTISNIYKHIESNQLDNDIVFIEIAPHPTLSFYIKQMVPSSLNESVSVYSALHKKKNDVEEFQQTISNLYCQNGYNINFKCQFNNKKSNQKINLPLYQWDDELYFAQTQVLEQHRKEGPPIDHLGLSNSYYSPFKNSYRTFIDIKNKPFQYLKGHMVKGKYYFPGCGYIDNIIQLYKNQDIFISFIEFKTPLILIEGINQCLQTNIQQTGKSEYRAQFHFKDQKSNEWIQSSNANFQLLDHTIEMPPKYNIEEIIKNKCTLARLTKNEIYTHIKSKTGLNYTAMFQGATECYIGVDCTLSVVSIESQTNSFLNIPILDSVFHGNISLINDQCQIVFDKVHGLKYYSSNIPNDYKDKSVYVYAKLKSKTSDSYSASFTVLLSDGTVVYEIDEAFSKSLIPIKELLKIEYPNDELFSINLQPKDSPIPAPSTFKSLIYENDRFNAEPPMVENLFQYISTIFYKNIINRCPEINIDIIKSLSIDEIISNFSKISKHERLFKYVFETIKENGILNSLEEKDDTYFVFNEVLIKSSRVISKLLFPLENDNDNEDTPQLLFQNGLMDKVYKCRYLKNKNQMIAHIIKHSIKEIINNNIIIRILEFGGGTASLSVEVIEEIVTLLQENPNYQVEIEYTWSDISPAFIVDTKNKINKIIKGAGITNGLNVIYHPLTIDESLVELQSIKPSYYDFVIMSNVLHVVKDIKQAVEQMYQLLIPNGQLLFVEPPYKSIICDSLFGSFEQWWAFTDTDIRKDHCCLSQDGWYKLLKWSNFESIEMSTESKFMGSVIQAQKPSFTSLINQQPKYDNIIIFGNNCPNFIDNIKPFSNFNEFIQIETIQEFDQLINKSTITNDSIIYFIKSINQLSLDNYKQATLEYIEINQKLLQINSLCKHVLIVNDSRKTNYLASSIVGAARYFDEFQQLKLHTLDFDYDSTQNYLISKNNKMVQFINNLIDSKTNVHKEMIIINNKVYYEIVQKEKNLKLKYNSESFEQQDNLMCSLSPNLEYQLQSKQIKLRDNQVEVKTIATGINNKDYLVYSGLEGSVNSNTPQFGYEFSGIITRVGNNVKDYKVGDNVFGLSNSCTSSNIIVNHERIQIKPSNISHIEAASIPIDYLTSFMSLFNVGCLNIEDNESILIHLGSDSFGLSTFEILKWKGFKSNLFVTVNSDEIKQYLLNNYGDLITAIYSNTDKGYVSQIKNKLIEQGSNDNGVDLILNTLPSDFMDSNFQLLAINGRIIDLSNDHLNQSEYMKNVNFTLNRGYHNFDLMSQRNSRINRSLLTISKAIENGELKLIPIKEFSNSDINDAIEFIIEENRIDKIVVSHDHEVYQELYAKFSNENDFSILKSNYQINSNNLGKNILITGQSGIILEILKWIIKYSNINTIENVIILSRSSLKWELELLINQTKLSNNNIKFHFKSVDVGDSEQVDNAINEILNENQEIINIHSIFHFAFTQIACKVQEINMKHLDISHGAKTMGAINLHNQSIKRNWKLINFVISSSIASLVGSTDQCSYVCANALLDSFSKYRVSLGLPSTSINLGAIESTGFVSKNESISVFLDGSGIIPTPINQVLGLLDLQIQNPGKFTNSMVAKFNPLNFSNNEQINLLLKMDYIFNLHSNGYTKVKESAGSKNVDELFIKKISDLFSIDESKINKDIRLIDYGADSLVIVQLKNWVDQEIGFNLITIQQLQNNTINVSIKIILNFLKKINK", "length": 2512 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KS1-1", "protein_name": "DNA cross-link repair 1 protein", "gene_name": "dclre1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSDDEDDINLYITRSKNNENKKTNKNRLIDNNIQKTKTTTAVLTTRTTTTTTTTTASTQLKWDYGDEDDDDYSAPKDIDEEQSSKQFNYQNNQIVVKQDHDDYSAPKDMDEEQSSRQFNYQNDQTLVKQDDDHDDYNEPKDIDSQSLIDEDCDFEFDNSDFFFDDGTTNNNDNNNKNNKNNNNNNNNNNNNNNYNNNNNKNYKRKYYQSYNNSNNINNNNNNNNDKFEKRLSDLKKTGKEEAKKRGYQVRKTPTKEKKIPPSFKVIDGTNFLVDGFQYKSEDFTHYFLTHFHSDHYVGITKTWSFGNIYCTEETGKLVSHKLGVDQRYIVKCEWNKLIEIQGVKVAFLDSNHCPGSALILFIIPLRNKDGEIIGEESILHTGDFRYNQSMNNYPLLKGRTISKLYLDNTYCDPQYVFPPQPEIIKQVASIVRKENDGETLFLFGTYVIGKERILLEIAKQEGKPVHVSNEKYAILCCLSTCLDINKFTTNELITPFRAVTMSMLSYHNMLSLLDSSNNKYKRVIGFRPTGWTQAKKSITYLNRGPTTFYSVAYSEHSSFNELRDCIDHFRPTQIIPTVDCDSPIKVKNILAHFSDLYEKKKQLTIASFFSAQPVTNFFQSFFKSKSEPIIDEDNKKLIPITTTTTTNINTLTATDTTTTKIKTSNTLIKDEFTDDLIWDCSDDLISDRKLLTQSDNSSALCKIEKEENFNDLSENNNNSNNNNNNNNNNNNNNNNNNNNNNNNNKLIIENDIKEEIIDFDDPVFISQQKWIEKQIYNNNNNSNNNNFTTPTKTNGNLSNNAKLNLTPTQTQTQTPTQNNKKQKTTNVSPTSYNSNNSSQQSGLKRSKSDPNVKKNQLQTSQPPSQSLITSFFQKCASPTSLFSATPPTPSITTTSNQSTKNKNSTTTTSTSTSNNKPFKN", "length": 920 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q86KX6-1", "protein_name": "TNF receptor-associated factor family protein DDB_G0272348", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEFELEDITIEQSSFTNNNSNNNNNNNNNSNSNNNNNNNNNNINNNNNHNNNNKNNSNNKNEINNQLDIPISNLVVDKENISKKYFCTICSDLLVNSFHADKFKAVQCKNGHYTTCLNCWEKHLEKKKNCIQCGVDVESIESLSSNLLVTQKFTTFKIHCPNSFFDTIDFIKDEVNGCKEIIQINELEEHLKECQYGFISCKNCEEFSKLPFQEFTQCPDFRKNTKEQHDLICPYVKISCEYCGDIINKINKESHNANWCQEITIKCLDCHLPFKKKEINQHQKSFCPETIIQCRYSKGGCNAMIRRSKLSQHLTEGDNHHQFISNILNQQDLKINELELKNTEFCLLLNGQNKKITELEILFKELNDSILIQKQQQKQQQQQQQQQQQQQQQQQQQQQSQQQQSQQQQQSQQQQQSQQSQQNNNSNSHFINNNNNNINNVQMSDSPNGGSLPQAVYKNKWVISNYSEQEQQGISKDYIKSPLFKIGNSTFFLKWFPFGKKKLNYCSIFLYKTQDDKSIIVNYYIHLVNNQISDEVYEKRGCQKYDSENGSAGYGSSQFIKRADLLNDANGFLINDSITIEIEIFATEEILPLQS", "length": 595 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8BI41-1", "protein_name": "Syncytin-B", "gene_name": "Synb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTGFWVLCFVLFPSSLSYPESWMPLVNLTHHILRDTNSSLFSNCWVCLSTQTQRSLAVPAPLSIWTDTPMKLHLTYSVRPFSGSFSISDIERRLRLFRPLTASYSFHNPDRRAIAFLQLVSSTGIFRIITRITSVIYPHKDRFFESAQRPLWGPLFTETVLRSQAPLCISRFFKVSAYATFVGNLSASLCNYTMHISPSTSHENLDLSTTHTFKQAMKRPDAKWKNPLRFSGPPSLIFSKPAYYPCPTDIKHCHTSPATPWMHCPQAPFGTCYNLTLFEPDNSTHPVTMSVNPTHFKVKLQGHRDPYPLSHYQPLTGAALSGQYSVWENEITVQENWDITSNIFSHLLSFSYAFCLNSSGVFFLCGTSTYICLPANWSGVCTLVFQYPDIELLPNNQTVPVPLFASVLSSDSVLRPKRSPHLFPFLAGLGISSALGTGIAGLATSTLYFQQLSKVLSETLEEIAASITTLQNQIDSLAGVVLQNRRALDLITAEKGGTCLFLQEECCFYVNQSGIVRDAARKLQERASELGQHSDSWGQWPDLGRWLPWLTPFLGPLLFLFFLLTFGSCLLNCLTRFVSQRLGSFVQDTAKRHVDSILQNFQYKKLPQDSPDEDTIPT", "length": 618 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8BYG0-1", "protein_name": "Tetratricopeptide repeat protein 24", "gene_name": "Ttc24", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSSRQYGLSDVLRALEESRKLADADRSTDQGLLGPFYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPSEQATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWEQGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQEKIAQARFLPSAPGKLQTSRKAKTSARVQSSAEDAQESQWEGEASEGGHEKKEMEGLVNTATVLGPQRQNRATTHLPSGGPSPSGEEYPFIIAPKKLRVSRSSTWAKEALGRNFQRTRIQSGLCSIM", "length": 334 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1N8-1", "protein_name": "Alpha-defensin 22", "gene_name": "Defa22", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKKLVLLSALVLLAYQVQTDPIQNTDEETNTEEQPGEEDQAVSVSFGGQEGSALHEKLSRDLICLCRKRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C1P2-1", "protein_name": "Alpha-defensin 21", "gene_name": "Defa21", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKTLVLLSALILLAYQVQTDPIQNTDEETNTEEQPGEDDQAVSVSFGGQEGSALHEKLSRDLICLCRNRRCNRGELFYGTCAGPFLRCCRRRR", "length": 93 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8C5Y2-1", "protein_name": "Mitochondrial sheath formation-associated protein", "gene_name": "Misfa", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVLGWMLFVGLATYMGTFPEAMPPTLKWKERLPGQENKARRRIQALEEELLL", "length": 53 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CDW1-1", "protein_name": "Protein FAM228A", "gene_name": "Fam228a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MADTKTSKCDEHFSVEKLKEWPEPESVSLMELLAREDIDEAVHAVLFRENYVVKRLDTYLQHLAVFKERRKEMLHKKWVENVVQPLQQRITDKITSYRRPGKNQVKYEHCLKQTNKPTKVSSSCLFQKQQEFREAKGTSYQHGRGKTHDTQKEAKETEKGLSFTPFSLRPHCSSPRERQRASARLMQSKPGGRNRYKGASSEKPVFTLKSHLPKEEKTVSRSQLVFERQFRASRLSQDIKEAEKKGLVVGTGPQRPRSWAAADSVPRPSLVGRRVMTAEILGEHLVSLHQAARSGLQWP", "length": 299 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8CEK3-1", "protein_name": "Serine protease inhibitor kazal-like protein, minor form", "gene_name": "Spinkl", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSTWIKFLFILTLVLLPYSVFSVNIFAGPENVIKEPNCTMYKSKSECSNIAENPVCADDRNTYYNECYFCIEKVVEKLKYRYHGICIYK", "length": 90 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8IZP1-1", "protein_name": "TBC1 domain family member 3", "gene_name": "TBC1D3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDVVEVAGSWWAQEREDIIMKYEKGHRAGLPEDKGPKPFRSYNNNVDHLGIVHETELPPLTAREAKQIRREISRKSKWVDMLGDWEKYKSSRKLIDRAYKGMPMNIRGPMWSVLLNTEEMKLKNPGRYQIMKEKGKRSSEHIQRIDRDVSGTLRKHIFFRDRYGTKQRELLHILLAYEEYNPEVGYCRDLSHIAALFLLYLPEEDAFWALVQLLASERHSLQGFHSPNGGTVQGLQDQQEHVVATSQPKTMGHQDKKDLCGQCSPLGCLIRILIDGISLGLTLRLWDVYLVEGEQALMPITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDEDTVLKHLRASMKKLTRKKGDLPPPAKPEQGSSASRPVPASRGGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPCPGGAVREDTYPVGTQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFRQSCWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQCAPTSGPCLCGLHLESSQFPPGF", "length": 549 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8K072-1", "protein_name": "Receptor expression-enhancing protein 4", "gene_name": "Reep4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVSWMICRLVVLIFGMLYPAYASYKAVKSKNIREYVRWMMYWIVFAIFMAAETFTDIFISWFPFYYEFKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDACIVQAKERSYETMLSFGKRSLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSIPDTPVPTYQDPLYLEDQVPRRRPPIGYRPGGLQGSDTEDECWSDNEIVPQPPVRPREKPLGRSQSLRVVKRKPLTREGTSRSLKVRTRKKAMPSDMDS", "length": 257 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8MP30-1", "protein_name": "Uncharacterized histidine-rich protein DDB_G0274557", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEIKYFLVLLVGFLLVLPSIVNPYRKGVTITNQQPKINIYQLDVNNPHNPNNNPHNPHNPNNNPHHPHHLHHHHHHHHHHHHHHHHHHHHHHHHHHPHHPHHHPHHHHHPHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHPHHHPHPHPHPHPHPHLHPNPHPHPHPHPHPHPHPHHHPNPNPHPHPHPHPHHHHHHQEASECLSYQGNRNRLFIKRDY", "length": 233 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8NG83-1", "protein_name": "Olfactory receptor 2M3", "gene_name": "OR2M3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARENSTFNSDFILLGIFNHSPTHTFLFFLVLAIFSVAFMGNSVMVLLIYLDTQLHTPMYLLLSQLSLMDLMLICTTVPKMAFNYLSGSKSISMAGCATQIFFYTSLLGSECFLLAVMAYDRYTAICHPLRYTNLMSPKICGLMTAFSWILGSTDGIIDVVATFSFSYCGSREIAHFFCDFPSLLILSCSDTSIFEKILFICCIVMIVFPVAIIIASYARVILAVIHMGSGEGRRKAFTTCSSHLLVVGMYYGAALFMYIRPTSDRSPTQDKMVSVFYTILTPMLNPLIYSLRNKEVTRAFMKILGKGKSGE", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8NGV6-1", "protein_name": "Olfactory receptor 5H6", "gene_name": "OR5H6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MFLYLCFIFQRTCSEEMEEENATLLTEFVLTGFLHQPDCKIPLFLAFLVIYLITIMGNLGLIVLIWKDPHLHIPMYLFLGSLAFVDASLSSTVTPKMLINFLAKSKMISLSECMVQFFSLVTTVTTECFLLATMAYDRYVAICKALLYPVIMTNELCIQLLVLSFIGGLLHALIHEAFSFRLTFCNSNIIQHFYCDIIPLLKISCTDSSINFLMVFIFAGSVQVFTIGTILISYTIILFTILEKKSIKGIRKAVSTCGAHLLSVSLYYGPLTFKYLGSASPQADDQDMMESLFYTVIVPLLNPMIYSLRNKQVIASFTKMFKSNV", "length": 325 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8R264-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r215", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNWNNIIHTIIFLSLTGPGIVGNMLIFIRHIYMPALGTEKKPVDLIVIHLAFSNMITICTTGIKDIATVFYFRNFLGDIGCKAVVFLARMARGLSICTTCLLSVVQAITISPRTSLWTKLKPQTACQIIPFILVFWIFNGLISSNLLSYIKGGSSLNRSVAATFIGHCYMLQSRHTIKWIFLSLMTLRDVIFQSLMGWSSGSMALNLYKHHKRVLYLYSSRFANNSPPEIRATWSVLILMTCFLLFYWADFILSFYHGFTVTHESILLNIKVFLELGYVSFSPYVLISRYIHPPNVFHAH", "length": 300 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R272-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r220", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVLQFIKKTIFLFMTMVGILGNMSVSVHYMFSWWGSPEKKPIHLILTHLTFTNIILLLAKGLQKTIIVFGLRNFLDDIGCKIIVYLERVARGLSICTSSVLTVVQAIIISPRASGWRRLRPKSAWHILPFFSFFWILNAFISVNLIHSIRSKGMNTSQHKNSDDYCYLTPESQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLLMLCFLFFYWTDCALSLFLSLSLGDSSLMINIQGFLTLGYAIFSPFVLIQRDGLIPVCWHAQ", "length": 298 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R278-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r213", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLALRNYIQINTPWCMCLFVTPLTPCLPEYWDPDSLRVEGPTESSLRHNTASCTLKNTIMQNVQFRSMSSITDAFFKMYLHTRKEEMILKILKEITFLIMTVLGILGNMSVSVNYMFSWWGSPEKKPIHLILIHLIFTNIIILLVKGLPKTIAAFGLRNFLDDIGCKIIVYMERLARGLSICTSSLLTVVQAIIISPRASGWRRLRLKSAWHILLFFLFFWILNALISVNLIHSTTNTRLNVSQLKSDDNYCYFMLPIQKIKWIVLPLMVVRDAVFQGAMGGASGYVAFLLHKHHQHVLYFQNSKLLYRTPPELRAAQSVLLLMLCFVFFYWTDCAFSLFLTLSSEVNILMVNTRDFLTLGYATFSPFVLIHRDGLLVECRHVQ", "length": 384 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2A9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r229", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDFGNLAMGIVLSLQSALGILGNFSLLFYYLVLYNKERTLKIIDIILIHVFTSNSLIIFSKGLPEVLAVFGWNDLFDDVGCKLIMYVRRVSRSMSISMTCLLSVFQAITISTRNSCWKEFKEQTAKFMGLFISLCWILFMLVNMLFPVYTSTNRNSKNKTQKKDIEFCHSVGRDKMVDIMYTAFCVFPEVLFSLLIVSSSTTMIVILYGHKKRVQHILHTHASPRTSAENRATQTILILVCTFLAFYTLSSVLQGYVALSHDPSWWVMNITTIISMGFPAIGPFVMSRDFTVSRFCFTCIGNLKLP", "length": 306 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B6-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r178", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSAHDKSLKTTDDMTLQILLLCQFVVGTVANVFLFLHNISPVLTGSKQRPRQLILSHMSVANALILFLTSFPDMMAFAPRNSPTHLKCKLEYFSRLVARSTNMCSTCVLSIHQFVTLVPVNRGKAILRASVPNLTSYSCYSCWFFSVLSNIYIAIKVTGPQITDNNTDSKSKLFCFTSGFSVGIFFLRIFHDGTFMSIMVWTSVSMVLLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNFICIIFYTFSIDSRLFMSHFSKVFAAGFPTISPLLLIFRDPKYPCSVLFNC", "length": 304 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r64", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLSQNKTLKTMEVLALQILLLCQVVVGTVGNIFLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLFAYSYDLIDFVPRKPPTDLKCKLAYFFNMVAQGTIMCSTCLLSTYQFVTLVPGNWARVMFREISPKVVSYCCYSCWLFSVLNNAYMPMYVSGPQKTHNDSDSKDNWICSISGVSVDMNFLRFSHDIIFIGIMAWTSVSMVIHLNRHHHRMHYLHNPNQINRGHAETKAAHTIMMLVVTFVSLYILDCICSLFHISFVESRLWLIDVIELLHLSFPTVSPFLLICRDPMGPCSLLFIVGLEIHVTVGAITEEQ", "length": 320 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2B9-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r59", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEMLALQILLLCQVVVGTVGNILLFVHNFSPVLTDSRLRPIQVILINLAVANAFMLLLLTYSHDMIDFVPRKPPTDLKCKLAYFFHMVAQGTIMCSTCVLSTYQFVTVVPGTWARVMFREISPKVVSYSCFSCWLFSVLHNAYIPMNVSGPQKTHNDSDSKGNSICSISGVNVDMHFLRFSHDIIFLGIMAWTSVSMMIHLNRHHQRMNRIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFHISFVESRLWSRHVIKVLALSFPTISPLLLIFRDPRGHCSLLFSVGLEIHVTGGVITEEQ", "length": 310 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R2C0-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r62", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEVLALQILLLCHVVVGTVGNILLFVHNFSPILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVPRKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLNNAYMLMNVSGPQKSHNDSDSKSNSICSISGVSVDMNILRFSHDIIFLSIMAWTSVSMVIHLHRHHQRMNHIHKVNQNNRGHAETRAAHTILMLVVTFVSLYILNCISILFYISFVESRLWLRYVTKLLALSFPTISPLLLIFRDSKGHCSLHIMSVWKST", "length": 300 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8R4R9-1", "protein_name": "Protein phosphatase 1 regulatory subunit 14C", "gene_name": "Ppp1r14c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVVTGGGEAAGGTSGGGARVFFQSPRGGTGGSRESSSHSGSSREDSAPVATVAAAGQVQQQQRRHQQGKVTVKYDRKELRKRLVLEEWIVEQLGQLYGCEEEEMPDVEIDIDDLLDADSEEERASKLQEALVDCYKPTEEFIRELLSRIRGMRKLSPPQKKSV", "length": 164 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8R4V1-1", "protein_name": "NFAT activation molecule 1", "gene_name": "Nfam1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESWLLRRGARVRCLHPPSWLPAWCFLCLLPVPQTLQLTGLVSLTHTSLPIMVSLANTDVFFSCRIEDFTRLQRDLPVKLFHTDIHGRRRWEKQINCQHRPGMENHTRDCMVKLSQANTSATGIYYFIVEGEETYQSDGVVILVRDTVYQPPAFKVQEALMLGFTSLMSVLGVLGTALLLWKKKQISVLGKHTAKTCSGLKSTVGTTKPPAESVYTSLQRRETEVYACMKEETGSPVFSQSPATKEKLNRFEDDNEFNLVYENL", "length": 264 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8T277-1", "protein_name": "5'-AMP-activated protein kinase subunit gamma", "gene_name": "prkag", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MWYPGDEDEEFTSIIENIEKKETQEIKIKTEKLRQASLNQLPIEQSEGVGGGELSEYNNNTTNNNTPTNTTTTTNTNTTTMNNSNNNNERILSTSNGFDIRLPPNSIEQPSPSFISSSQDGVLTVDPLAVDGEKGNKESQSPPNGDNQILNNNNMFFKDITSLPSTDNKSSTNTNNNNNENPLKQTISSSPSKSTTTTTTSTSTTTTPSLSSLSSNNNNNSNSNNNYINHSSISTVSEGLENLNLKSGIKKIDSETEKYIEEGKQVFVNFLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDFIDILLYYYKKPKSNNIFQDMGIHRIETFWREISVERPSSLISTEPETNLYDAASLLLCYKIHRLPVVDKKDTNSILHILTHSRILAFMMKSFPQLPEKLLSIPIGSLGIGTFATVVTVMTHTPLVEVLELLSEKKISAVPIIDSETSKIVDVYSKSDVTLMSKQGILSPSDLNLPVHQVLSTFTKLWQRPEQIYTCTRFDKLGDVIERCIKKRVHRLVCIDSSKKVEGILSLSDILNYLLNDVKSINH", "length": 577 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q8VEU4-1", "protein_name": "Olfactory receptor", "gene_name": "Or14j2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIVENITTMRGFLLMGFSDNHELQILQALLFLVTYLLGSAGNVIIITITTLDPQLQSPMYYFLKHLSILDLSSLSVTVPQYVDICLTQSGYISYAQCMLQIFFFTGFAWGEVAILTVMSYDRYVAVCLPLHYEVIMGPSKCRWAVTAVWLSSVIPGTLYIASIFSIRFCGDRIIHQFFCDVPQVLKFSCSDDYLVTVGVADFLSAVAFACFIGIVNSYVHIFSTVLRMPSAESRSKVFSTCLPHLFVVLLFLSTGIFAYLNPTSDSPTALQFLVSIFYTVLPPTLNPVIYSLRNETIKSVIRKLLLSSKFTG", "length": 312 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VFX0-1", "protein_name": "Olfactory receptor", "gene_name": "Or5b101", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENRTEVRCFILVGLTNDPSLQLPLSITFLLIYIITLIGNLGLILMILLDSRLHTPMYIFLGNLSLVDFCYSSTVTPKVIAGFLTGDKIMSYNACASQMFFFANFGDVENYLLASMAYDRYVAVCKPLHYATTMTTHMCASLVIGCYICGFLSASIYTMDALSLSFCESNVIHHFFCDVLAVMIVSCSDSHVNELILIYVVSFNMFFALIIILISYMFIFTNILKIHSSAGYHKAVSTCASHFTAVSIFYGTIIFMYLQPSSSHTMDTDKIASVFYTMVICMLNPLVYSLRSKDVKSAFTKIVLRSK", "length": 307 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8VY69-1", "protein_name": "Vesicle-associated membrane protein 723", "gene_name": "VAMP723", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNCGK", "length": 217 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q8VZ67-1", "protein_name": "Uncharacterized zinc finger CCHC domain-containing protein At4g19190", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGEGEGSGIRLSKRFAGGKVTGGSLEVDYKTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQAALISKKEREKIETMKAVSFMYVRPPGYDPESAKAAEYKDEKHKGQGSSTQDPVADDNVGSRPEESQGGGERTQERKKPRPKDVFGRALPTEEEFEVLKNAPRMETGIPGRVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNEELRLKRDDPLTAIIAHTDPSEPLKWELKQKPGLSPPRGGFDPDDPNQQIVAEDIFDEYGGFLEGSIPIEILKSMSSDKKRKSKKNKRHKKHSSRTVEETDESSTGSEDSREKRGSKKRKKLKKKSKKQYDSDSLSFEGSGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKHQKRKEIVDRPSASSDDSDYYRSNSSRKKRSEDDYKSHHRERKQVHSNDPVSEKSQKQHYSESGKIQRVEKEHRYDERRHRYVDMESENRNRSEKKPRYDDRDSEKHHRSVKGKEKHVYEASDDPEEFSDRYRSTKKTESDSESNRRSRKKKHELSSEEEEGESRKHRYSTNRRRN", "length": 595 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q91V82-1", "protein_name": "Beta-defensin 8", "gene_name": "Defb8", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRIHYLLFTFLLVLLSPLAAFSQKINEPVSCIRNGGICQYRCIGLRHKIGTCGSPFKCCK", "length": 60 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q923B3-1", "protein_name": "Neurotrophin receptor-interacting factor 1", "gene_name": "Nrif1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTLPTTWPHESVKFEDVSLTFTEEEWAQLDFQQKCLYREIMMENYSNMISVEHHFSKPNVISQLEKAEDCWPMQREIPQDTLPECSWPSPDPGMNSFPSKSPLMKIEVVEVLTLNKDVAGPRNALIQSLYPEDLNPGNLKPAQQPSKRLTDTEASRQKFRHFQYEESAGPQKAMSQLRKLCHQWLQPNTRSKKQILELLVLEQFLNALPEKFRVWVESQHPEDCKAVVALLENMTSVSKDDASLACSSEATDQLKEKRKGVATLPVTFAAEVPAEEPVTFQDVAVDFNEEEWRLLGPTQKTEYHDVMLETLGNLVSVGWEPTLGNRELTPDSPIPVVKPIHDPNTNDLSRNGTQSTVFESILEDGVKEMHSIESNQVGNLQEKGHPQKKFSESSKSQDQTSRHKSQGSLNEVLPRKYVKVKQKGTGKRKGRTNTISMTRGLRIRKQQKDSVEWQGRSGSTPVTHGSSIKKQQQGSEQGKPGTSRDPITLTVPAKVYQKATGSEESIFMDSSDAMVPDVPPKIHQKGPEWHKVGESNNSMLQGSSVQNHQMESGAGRASDNSLLTHALPVKSHQKGYKEGNVQGNRNSWKHIKPHQKGSKGERVEELSTSEKHVPYVKNHLKTSERGKDREINASIKCDPYIKTYYRGSDVGRLRRANNCRKAFSLHAQQISFIKIHKGSQVCRCSECGKLFRNARYFSVHKKIHTGERPYMCMACGKAFVQSSSLTQHLRIHSGERPFECSECGRTFNDRSAISQHLRTHTGAKPYHCERCGKAFRQSSHLTRHERTHTGERPYVCIKCGKAFTQSSHLIGHQKTHGIKFKKQPKL", "length": 828 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q924S2-1", "protein_name": "Inactive 2'-5' oligoadenylate synthetase 1C", "gene_name": "Oas1c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MENGLCSIQARELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTALKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGDFSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSNKNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDPADPTRNVAGSDLQAWDLLAKEAQTWMQSSCFRNCDMSFVPTWDLSPERQECAFQ", "length": 362 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q925U0-1", "protein_name": "Oocyte-secreted protein 1", "gene_name": "Oosp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKPFVGLLGLLLLLSFMKTCADDWTAISLQCADHWFHLRIRPTIFHNIFMEPDEVFLGIGCPVTTTWPNDTYEFIYRTYSCGIANKVLCDVTLLKTQLTYISKNASLQAEMSLSCVMHNQSPHFCEAESRGDFTGDPPGWTEDMRARRDEQTVPMVQPNLSTSSEDHHVSTEPWASETSRSEAAEVPSFMDQNFSVFHFSRM", "length": 202 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q94490-1", "protein_name": "Ubiquitin conjugating enzyme E2 B", "gene_name": "ubcB", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MAAHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFSTWSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYAK", "length": 148 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q945S5-1", "protein_name": "Vacuolar cation/proton exchanger 4", "gene_name": "CAX4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSISTESSSNLSLLENGGGGSDKPTAETSRRVRRTVSASSLIRKRSDLKLISRVRWEFMRRILTNLQEVLLGTKLFILFPAVPLAVVAHRYDCPRAWVFALSLLGLTPLAERISFLTEQIAFHTGPTVGGLMNATCGNATEMIIAILAVGQRKMRIVKLSLLGSILSNLLFVLGTSLFLGGISNLRKHQSFDPRQGDMNSMLLYLALLCQTLPMIMRFTMEAEEYDGSDVVVLSRASSFVMLIAYLAFLIFHLFSSHLSPPPPPLPQREDVHDDDVSDKEEEGAVIGMWSAIFWLIIMTLLVALLSDYLVSTIQDAADSWGLSVGFIGIILLPIVGNAAEHAGAVIFAFRNKLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSPSSKLLF", "length": 446 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q96AK3-1", "protein_name": "DNA dC->dU-editing enzyme APOBEC-3D", "gene_name": "APOBEC3D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVLPKRQSNHRQEVYFRFENHAEMCFLSWFCGNRLPANRRFQITWFVSWNPCLPCVVKVTKFLAEHPNVTLTISAARLYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVFRKRGVFRNQVDPETHCHAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARHSNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPWKGLQTNFRLLKRRLREILQ", "length": 386 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q99N64-1", "protein_name": "Germ cell-less protein-like 2", "gene_name": "Gmcl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGLLVSRVLRCRDSSLLEPQPEAIAGASYIPGSRKRKRNSLEELATSSNVHGPQNQGMYPHQVLNYIYWKRVKISSNDAYQNLFLDGHDSDIKIRALGRTWCLHKVFLCQSGYFANILKGTWRESHHGVINLIIKNEDIDTRSLHFVFGALYTDADLSITPLEVPQVLAAACLLRVDRVIQQCEGIMKETINRNTVCSYYLAAETYRLKAVKTRCFEWLLCNLMVHPSVALYKEVDLKLMYLLALSSDLLVMQKEIDVYTTLKIWMFLYLNPCWNGTMKQLLQHANNWLSTHMAYVDNISFLESEEGLIFQPVFKKLRFQHIICDLTSTTILEQDRLIPMAWLSPIYKQQWLTLLRTQEYGVIGPQVINEQELEECTMRCGTMIPKDGRYTWKWSVGRLGFPLRVTFTRQCVILRQRCQRCDGSACHNHIRNVIFRITLVCFDSNKRVTFRKTTGYKILTFEYKEEQIVMKLDSDVLTFPMCIFCNFLFVNLGNAENK", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9C7P4-1", "protein_name": "Putative zinc finger CCCH domain-containing protein 9", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MADAGDNQQEAERRSDETESRSIKEPKEKEDEDENPQDQIQSKERMRQSSPYPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQRPQELPVRICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSGARPEKRSKIVPDFQMRDPRHHDTEWRFERERMERIERQRREAEENLQEQRQRDSIERQRREAEENLQEQRQRDSIERQRREAQENLQQQRQRDSIERQRREAQENLQQQRLQDMPENHNVDDQQNLQEQRRISIEKERTEARLRLEQIRPTVSFPINEFIRAVVLLRELIENWDDKAWKK", "length": 321 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9C8M4-1", "protein_name": "DNA-directed RNA polymerase subunit 12-like protein", "gene_name": "NRPB12L", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDLQQSETDDKQPEQLVIYVCGDCGQENILKRGDVFQCRDCGFRILYKKRILDKKETRIGV", "length": 61 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9CQK8-1", "protein_name": "Small proline-rich protein 2A1", "gene_name": "Sprr2a1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSYYQQQCNQPCRPPPVCPPPKCPEPCPPQVWPGPCRPVMCFEPCLPSVWPGPCRPVVCYEQCPPQPWQSTCPPVQFPPCQQK", "length": 83 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9CWP4-1", "protein_name": "Lymphocyte antigen 6K", "gene_name": "Ly6k", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAFLVALLVVLGLQLVQSNALTCHVCEAQNSYACSNPSQCPGEKKFCLLAVTRIFERFFYVSKQCTRRCPTPVVSPPSTNPPSEPKEFLIEKPMPFLFYKCCQWDSCNGEGPPTDQLLKEQPGKASGRRHRYIELLLTGFMVLTANGLSALCLL", "length": 154 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D541-1", "protein_name": "Coiled-coil domain-containing protein 7A", "gene_name": "Ccdc7a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCAKHPSTISMKLTSVPELPYKKGLLNSSPKPKEKHNAKSKYGKNESMVLRSPPTGESIVRFALPIPLSKTKDKISADEMVRRITTNLKMVVSNLEDTYGACYDNGEKAAEKSEAEGLSIGDDVSSFLLCCSQFTSQLEEAVKEECGALESLYKWFQQQVNQMEEISKDQSNLEELQSDGKTASLNIVQIAKLARKFEDFKSRLKTRKEVMQTKNEDKEIMAETLKHYGLMEKQIEEFITSHSALESQTETESQSGTPSVTTRMARMIKIFENQSTMLEKALNDQQTIESKYKQLETDFQMLIMEKTLLEAEIRRLREIERVKSAAKEEQTKKSGKSEKKKFKEKEKNLSPNREFKSIEELLQIQKEAELLKTEKKTLQGQLKWALEEAERNKTQLEFVLHQKMEMFKEESKTKVGQSQNKSKVKIEDSKDSLPKKSDTQLGGQRKDQISSDQSKRPKKKQLADIDPSAVEDFPPETFKSFTVMPLIEEHRESISSQPKEEMAKASEQSEAEDIEGPLEIPSESSNEDDDLLPEDESPMMEQVTDVGRYKSIYISAEPIDTMSLISRTQSEMETLEAINYDNVLNEGEEQDKKIGKDSDTGRKSKRKRSSKIRKLSTHEEESDIVHYEEATKAKVPSKKRASDPYGDEAYESRGSVSKAQTYTKKQGTHQRGRGSASDAYGDEAYESRGSISKAQTYTRKQGTHQRGRGSVQEEESDTVHYEEVTRAKVPSKKQASDPYGDEAYESQGSVSKAHTHTKKQGTHQRGRGSVHEEESDTMNYEVPRKSKISSRRKGFALPITHQVEMHSSESQGSISKSNTETKKQGTHKRGRDSDADGARTPVSQGSDSKADTERKKHRSKEESTISKDSIPVLDEVQDKTFEHQESGLRLEVQAKKLTFSSQNIHNEESATDIKVEYQNVPSSSQVQLKKQKPLGGEIFTTHFVVPAESHAQLYQTHTPETQIERGTTSGTARLTTIPVEHPKKEASPDNLFPEKKLYITRAPTQTKKQYPPWDAKAETQKKTVKEVQGISEPQTKLNPTMSGIILHLDMDRVVETDLENLEETIVPHVLRSELEIGTDAKNMPETPTSREAVRTEAKGNQDVTISIAKGMKLIGKLKDQHGLSSFASKDTISPGKSLIKSSRDNQDDSLLETKPQENTSDKYHPSKTFPTKVINMLPFSEKSLGSTSANVDVAPKPVYRASRGRSRISKALQQLLKTSEHLKPTSTKNQNADLEKHLYISVRSANKHTQKDKKHGQSNNQKLKKQGALSSTKKQKHKEQPKTETIVENNDKFDDNLMMTTSSPNIKIIKELSKTLNLDGGDIELSDFVFKTASAAKKLENKGPSKTKNLNKESSRDIHILHLTTSAIRTLLLDEEAKIRSLEKKLMKQSTILQKSVSSMKKFMFEEPSRETKMKRKKREKRKIVVKSPHILPITTTQKHTIKEKSEISNLEKPIVRGTDILKKSTSARKKRVLKGKSKSATLPKKCDNFPFDLVRSSSDSSKQEVEEQPKPGNVDKKVSDDSYSPDISTTPTKKHTLKGQSKSRTIYEKGVDLPNNLVLSKSASSIQEFEEQPQPGNVDKKVSDDSYSPDISTSPTKKHTLKGQPKSENSDEKGIKRPNNLHMSASVARKRLLKALSTIP", "length": 1642 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9D5R2-1", "protein_name": "WD repeat-containing protein 20", "gene_name": "Wdr20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MATEGRGKETNEIKTHFTTREGLYRLLPHSEYSRPNRVPFNSQGSNPVRVSFVNLNDQTGNGNRLCFSVGRELYVYIYKGVRKAADLSKPIDKRIYKGTQPTCHDFNHLTATAESVSLLVGFSAGQVQLIDPIKKETSKLFNEERLIDKSRVTCVKWVPGSDSLFLVAHSSGNMYSYNVEHTYGTTAPHYQLLKQGESFAVHNCKSKSTRDLKWTVGEGALNEFAFSPDGKFLACVSQDGFLRVFNFDSAELHGTMKSYFGGLLCLCWSPDGKYIVTGGEDDLVTVWSFLDCRVIARGRGHKSWVSVVAFDPYTTSVEESDPMEFSDSDKNFQDLLHFGRDRANSTQSRLSKQNSTDSRPVSVTYRFGSVGQDTQLCLWDLTEDILFPHQPLSRARAHANVMNATGLPAGSNGSAVTTPGNSVPPPLPRSNSLPHSAVSNAASKGSVMDGAITSGVSKFALLSLHDRKERHHEKDRKRNHSMGHISSKSSDKLNLVNKAKTDPAKTLGTSLCPRMEDVPLLEPLICKKIAHERLTVLVFLEDCIVTACQEGFICTWARPGKVSKFQP", "length": 567 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9DAF8-1", "protein_name": "Uncharacterized protein C4orf51 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTHFLYLTPEILLPFSPLTSTEFELIRRKAQQLWQDETRWSASSMTTYSGSYREKQLDEATCNRLAQRVGQPQFEYKPTPLPGSSAYNTLPGHAGSQEAADGKGRLPDIASPSRDSPLNIKHKVAHQIWGSEVPCPTFLAYRGLRMSPCMQPKKPGFELLMSYRNRGKALLKRLQRQWDYESKLGSSEDSGTDRFSSNTSGSSGRKFK", "length": 208 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPV9-1", "protein_name": "Beta-defensin 5", "gene_name": "Defb5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKIHYLLFAFLLVLLSPLAGVFSKTINNPVSCCMIGGICRYLCKGNILQNGSCGVTSLNCCKRK", "length": 64 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPX4-1", "protein_name": "P2Y purinoceptor 12", "gene_name": "P2ry12", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEVPGANATSANTTSIPGTSTLCSRDYKITQVLFPLLYTVLFFAGLITNSLAMRIFFQIRSKSNFIIFLKNTVISDLLMILTFPFKILSDAKLGAGHLRTLVCQVTSVTFYFTMYISISFLGLITIDRYLKTTRPFKTSSPSNLLGAKILSVAIWAFMFLLSLPNMILTNRRPKDKDITKCSFLKSEFGLVWHEIVNYICQVIFWINFLIVIVCYSLITKELYRSYVRTRGSAKAPKKRVNIKVFIIIAVFFICFVPFHFARIPYTLSQTRAVFDCNAENTLFYVKESTLWLTSLNACLDPFIYFFLCKSFRNSLMSMLRCSTSGANKKKGQEGGDPSEETPM", "length": 343 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9ER80-1", "protein_name": "Receptor-transporting protein 4", "gene_name": "Rtp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLFPDDFSTWEQTFQELMQEEKPGAKWSLHLDKNIVPDGAALGWRQHQQTVLGRFQCSRCCRSWTSAQVMILCHMYPDTLKSQGQARMRIFGQKCQKCFGCQFETPKFSTEIIKRILNNLVNYILQRYYGHRKIALTSNASLGEKVTLDGPHDTRNCEACSLNSHGRCALAHKVKPPRSPSPLPKSSSPSKSCPPPPQTRNTDFGNKTFQDFGNRTFQGCREPPQREIEPPLFLFLSIAAFALFSLFTR", "length": 249 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9FFP9-1", "protein_name": "Serine/threonine-protein kinase SRK2H", "gene_name": "SRK2H", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDKYEVVKDLGAGNFGVARLLRHKETKELVAMKYIERGRKIDENVAREIINHRSLRHPNIIRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEAEARYFFQQLICGVDYCHSLQICHRDLKLENTLLDGSPAPLLKICDFGYSKSSLLHSRPKSTVGTPAYIAPEVLSRREYDGKHADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIQRIMAVQYKIPDYVHISQECRHLLSRIFVTNSAKRITLKEIKKHPWYLKNLPKELTEPAQAAYYKRETPSFSLQSVEDIMKIVGEARNPAPSSNAVKGFDDDEEDVEDEVEEEEEEEEEEEEEEEEEEDEYEKHVKEAHSCQEPPKA", "length": 360 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FLZ3-1", "protein_name": "SNF1-related protein kinase catalytic subunit alpha KIN12", "gene_name": "KIN12", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDGSSEKTTNKLVSILPNYRIGKTLGHGSFAKVKLALHVATGHKVAIKILNRSKIKNMGIEIKVQREIKILRFLMHPHIIRQYEVIETPNDIYVVMEYVKSGELFDYIVEKGKLQEDEARHLFQQIISGVEYCHRNMIVHRDLKPENVLLDSQCNIKIVDFGLSNVMHDGHFLKTSCGSPNYAAPEVISGKPYGPDVDIWSCGVILYALLCGTLPFDDENIPNVFEKIKRGMYTLPNHLSHFARDLIPRMLMVDPTMRISITEIRQHPWFNNHLPLYLSIPPLDTIDQAKKIEEEIIQNVVNIGFDRNHVVDSLANRIQNEATVAYHLILDNRNQNSVPNDPFQSKFKEISDGIFNSTLPVQNITSHVGHSFSALYGLKSNVKDDKTWTLGLQSQGSPYDIMTEIFKALQNLKICWKKIGLYNIKCRWVRSFAYYKNHTIEDECAIILPTVIKFEIQLYKVREGKYLLDILRIDGPQFIFFDLCVAFLRELGVL", "length": 494 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9FVV4-1", "protein_name": "DEAD-box ATP-dependent RNA helicase 55", "gene_name": "RH55", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKVARAVRLDFAKCREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNPYLKCEADQKSSQLVHLLIENKNKKLVVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDVAARGLDIPGIVYIRSLAIKDREVLEKGLKAFVSFVRAYKEHQCSYIFSWKGLEIGKLAMGYGILSFPYISEVKQDRIGIVGFTPVQGITFEDIKFKNKSREKQRQQNLLARKDKLQQEKRGKRKKSSKEAVDDSNKASRKRKLTGRQRQTIQTAQDEEEMNLRL", "length": 465 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9JI02-1", "protein_name": "Secretoglobin family 2B member 20", "gene_name": "Scgb2b20", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGTLLLLGLLVTGELSFQTTEACLPFFEGYASVLSGSRVWLYQELQAFNATAEEKVALEKIQDCFSEERIRNILLEPKIMEAMVASPECLSYYGLDNIRSILDYISKLLGE", "length": 112 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JJQ7-1", "protein_name": "X-linked lymphocyte-regulated 4B", "gene_name": "Xlr4b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASKIKGRPPKQPKVTPALPSNDSQQLHENNPGNNLALETCGESSSSHGTGGPKPGPSKKTLNERKRKYGVSVNKTVQNIEWNVDHFLKVQHERRQELYKDYSHQFLTLVMMWNIDVDQIKKQAGKLSDILDEQQKLFQQFQSIHMQKIEEFKELCDRHLKNLQAIKCCRRKAIIEEARKLMDYLEKRVTEETVHVNKQEAKDGVQSSLLSLLIS", "length": 215 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9JLV9-1", "protein_name": "Prolactin-2C5", "gene_name": "Prl2c5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLPSLIQPCSWILLLLLVNSSLLWKNVASLPMCAMRNDRCFMFFEDTFELAGSLSHNISIEVSELFTEFEKHYSNVPGLRDKSPMRCHTSFLPTPENKEQARHIRYEALLKSGDMILDAWENPLDYLVSELSTIKNVPDIIISKATDIKKKINAVQNGVNALMSTMNGDEENKNPAWFLQSDNEDARIRSSYGMISCLDNDFKKVDIYLNILKCYMLKIDNC", "length": 222 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9LJY9-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 18", "gene_name": "CYP705A18", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATLISVDFQHCFMYIILLCLFSLLCYSLFFRKPKGTRVGCDLPPSPPSLPIIGHLHHLLSSLTHKSLQKLSSKYGPFLHLRIFSVPIILVSSASVAYEIFKAHDVNVSSRGAAAIDESLLFGSSSFIYAPYGDYWKFMKKIFATKLLRPQVLENSRGVRAEELKRFYRRILDKARKNENIEISKESAMLMNNILCRMSMGRSFSEENGEAERVRGLVGESYALVKKIFFAATLRRLLEKLRIPLFRKEIMGVSDRFDELLERIIVEHKDKLEKEHQVMDMMDVLLAAYRDKNAEYKITRNHIKSFFVDLFVGGTDTSVQTTQWTMAEIINNPNILQTLRKEIDSVVGKSRLIHETDIPNLPYLQAVVKEGLRLHPPGPLLIRTFQERCEMKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLSYSRSGQEDEKEQTLKYLSFGGGRRGCPGVNLGYIFVGTAIGMMVQCFDWKIEGDKVNMEETYGGMNLTMVNPLKCTPVPRTQPFSFTSNLEILSS", "length": 524 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LSY1-1", "protein_name": "SKP1-like protein 8", "gene_name": "ASK8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSTKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKHHVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE", "length": 152 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LTG5-1", "protein_name": "Callose synthase 4", "gene_name": "CALS4", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MNQPNRGQILQTVFSHFFPVASPDSELVPSSLHEDITPILRVAKDVEDTNPRSLFLQDLDIKSVDDSINILSGHSHALDKANELDPTSSGRDVRQFKNTILQWLEKNNESTLKARQKSSDAHEMQSFYQQYGDEGINDLLNAGAGSSSSQRTKIYQTAVVLYDVLDAVHRKANIKVAAKILESHAEVEAKNKIYVPYNILPLDPDSKNHAMMRDPKIVAVLKAIRYTSDLTWQIGHKINDDEDVLDWLKTMFRFQKDNVSNQREHLILLLANVQMRQTQRQPNLLDDRALDTVMEKLLGNYNKWCNHVGLESSLRFPKDKQQKVVQQRKLLYTGLYLLIWGEAANLRFMPECLCYIYHHMAFELFEMLESKGSKKKYKPKNPTYSGKDEDFLTKVVTPVYKTIAEEAKKSGEGKHSEWRNYDDLNEYFWSKQYLDKLGWPMKANADFFCKTSQQLGLNKSEKKPDLGDGCVGKVNFVEIRTFWHLFRSFDRMWSFYILSLQAMIIIAWNETSESGGAVFHKVLSVFITAAKLNLFQAFLDIALSWKARHSMSTHVRQRYIFKAVAAAVWVLLMPLTYAYSHTSIFIVAILIYLSPNMLPEMLLLIPSIRRTLEKSDFRPVKLIMWWSQPELYIGRGMHESAWSIYKYMMFWIVLLTSKLAFSYYVEQIKPLMGPTKEIMSVPMPGYWLPEFFPHVKNNRGVVITLWSPVILVYFMDTQIWYAIVSTLVGGLYGAFRHIGEIQTLGMLRSRFQSLPGAFNACLIPNENTKEKGIKLAFSRKCHKIPNTNGKEAKQFSQMWNTIINSFREEDLISNRELELLLMSCWAYPDLDFIRWPIFLLASKIPIAVDIAKKRNGKHRELKNILAEDNCMSCAVRECYASIKKLLNTLVTGNSDLMLITTVFTIIDTHIEKDTLLTELNLSVLPDLHGHFVKLTEYVLQNKDKDKIQIVNVLLKILEMVTKDILKEEIKRLHLLLTVKESAMDVPSNLEARRRLTFFSNSLFMEMPGAPKIQNMLSFSALTPYYSEDVLFSTFDLEKENDGVSILFYLQKIFPDEWKNFLERVKCGTEEELDAIDYLKEEIRLWASYRGQTLTKTVRGMMYYQKALELQAFFDLANERELMKGYKSAEASSSGSSLWAECQALADIKFTYVVACQQYSIHKRSGDQRAKDILTLMTTYPSLRVAYIDEVEQTHIYSKGTSENFYYSALVKAAPQTYSTDSSDSGHMLDQVIYQIKLPGPPIIGEGKPENQNNAIIFTRGEALQTIDMNQDYYIEEAFKMRNLLQEFLEKNGGVRYPTILGLREHIFTRSVSCLAWFMSNQEHSFVTIGQRVLANPLKVRFHYGHPDVFDRVFHLTRGGVSKASKVINLSEDIFAGFNSTLREGTVSHHEYIQVGKGRDVGLNQISMFEAKIANGSGEQTLSRDLYRLGHQFDFFRMLSCYFTTVGFYFCSMLTVLTVYVFLYGRLYLVLSGVEKELGNKPMMMEIILASQSFVQIVFLMAMPMIMEIGLERGFYDALFDFVLMQLQLASVFFTFQLGTKFHYYCKTLLHGGAEYRGTGRGFVVFHAKFAENYRFYSRSHFVKATELGILLLVYHIFGPTYIGLFTISIWFMVGTWLFAPFLFNPSGFEWHEIVEDWADWKKWIEYDNGGIGVPPEKSWESWWEKDIEHLQHSGKWGIVVEIFFALRFFIFQYGLVYQLSAFKNKYSSLWVFGASWLLILILLLTVTVLDYARRRLGTEFQLLFRIIKVSLFLAFMAIFITLMTCRLILPQDVFLCMLALIPTGWGLLLIAQSCKPLIQQPGIWSWVMTLAWVYDLVMGSLLFIPIAFMAWFPFISEFQTRMLFNQAFSRGLHISRILSGQRKHRSSKNKD", "length": 1871 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LU95-1", "protein_name": "Pyruvate kinase", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEMLLGGQATNGALRSKTKIVCTLGPASRSVEMIEKLLKAGMNVARFNFSHGSHSYHQETLDNLRTAMDNTGILCAVMLDTKSPVIRTGFLKEGKPIQLKQGQEITISIDYKIQGDSNTISMSYKKLAEDLKPGDVILCSDGTISLNVLSCDKYLGLVRCRCENSALLGERKNVNLPGIVVDLPTLTEKDKEDIMQWGVPNKIDIIALSFVRKGSDLIQVRKLLGEHSKSIMLMSKVENQEGVMNFDKILENSDAFMVARGDLGMEIPIEKMFLAQKTMINKANAHGKPVVTATQMLESMTVSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAHPETAVLTMSRICKEAEDFIDYDILHKKTLGMVSLPLSPIESLAASAVSTARSVFASAIVVLTRGGYTAELVAKYRPSVPILSVIMPEIAECSDSVAHVARRGLIYRGIIPVVGCSARDSTEEMIRLAIGFAKTKGICKTGDSIVALHKIDGSSIVRIVSVE", "length": 497 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LX08-1", "protein_name": "Annexin D6", "gene_name": "ANN6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MASLKIPANIPLPEEDSEQLHKAFKGWGTNEGMIISILAHRNATQRSFIRAVYAANYNKDLLKELDGELSGDFERVVMLWTLDPTERDAYLANESTKLFTKNIWVLVEIACTRPSLEFFKTKQAYHVRYKTSLEEDVAYHTSGNIRKLLVPLVSTFRYDGNADEVNVKLARSEAKTLHKKITEKAYTDEDLIRILTTRSKAQINATLNHFKDKFGSSINKFLKEDSNDDYVQLLKTAIKCLTYPEKYFEKVLRRAINRMGTDEWALTRVVTTRAEVDLERIKEEYLRRNSVPLDRAIANDTSGDYKDMLLALLGHDHA", "length": 318 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LXS7-1", "protein_name": "Citrate synthase 1, peroxisomal", "gene_name": "CSY1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEISERARARLAVLNAHLTVSEPNQVLPAIEPWCTSAHITAAPHGSLKGNLKIVDERTGNEYQVPVSEHGTVKTVDLKKITTGKDDKGLNLYDPGYLNTAPVRSSISYIDGDEGILRYRGYPVEELAEKSTYTEVTYLLIYGNLPSQRQLADWEFAISQNSAVPQGVLDMIQSMPNDVHPVGALVTAMSALSIFYPDANPSLMGLGVYKSKQVRDKQIVRVLGQAPTIAAAAYLRKAGKPPVQPLSNLSYSENFLYMVESMGDRSYKPNPRLARVLDILFILQAEHEMNCSTAAARHLSSSGGDVYTAVSGGVGAIYGPLHGGAVEATINMLSEIGTVENIPEFIESVKNKKRRLSGFGHRIYKNYDPRGKVVKKLADEVFSILGRDPLVEVGDALEKAALSDEYFVKRKLYPNVDFYSGLINRAMGIPSSFTAVSRIAGYLSHWRESLDDPDTKIMRPQQVYTGAGIRHYETVRERTKL", "length": 480 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9LY06-1", "protein_name": "Glycine/proline-rich protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MITCILKISISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRFYCRFDTGFDVRFAAGFAADLTIGFTIGFDSGFATFLDVGLDDGFATGLDISFAGGFVTGFATDFDVGFDTGFTIGFDTGFDVGLPAVFSIGFDTGFAVGFAISFTVGFDAGFPTGFFVSLDVGFVADFVIGFATGIGVGFEVDFATDFDTCFATGFAVSFDVGFAGGFSIGFAADFANGFTVGFDGGFDASFFVGLDVGFVVGFVTSFAAGLDVGFAIDFATGFDTGFAFGLAFGFDVGFAAGFAVGFATGFTVVFDVGFASDFFVGLDVGFLTGFATDFDIGFVVDFDIGFATGFVVGFDDGSIVGLVVGLPASLDDGLAIDFVVGLDIGFVTGLFVGLVDGLTTDLDVGLVDGLDDGLDDGLDVDLVVVGFVVDGLAVDLDVGLGVGLTVGFVDGLDVGFDDGLDADTVDGLDVGLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDGLDVDLDDGLDVDLVDGLDIGLDDGLDVGLDDGLDFGLVDDGLVVGLFDVFVGTGLSWEIPPPGKLPPDASPLGIGSFGVGPPGASPFIASPSGEGPLSEGLLGIRSFGISPLSIRPLGISPLGISPPNIEPSKADASDADPSNAGPLGISPLSIDPPVAGASDEGPLGKLPPDLSPPGKGSSGEGPLVESPPSEGPLGVDPLGAGSLGISPLGKSPLRIRPLGISPFGKIPSNIDPSSALASDGGPPDEPASAEGSPDVGIFGISPPIIDPPVEGASDGDPPEKLSLDISPLGKGPSGVSLLGAGPPGVGPVIASPPGEGPRDAGPLGAGSLGISPLNIRRLGISPSGISPPNIDLPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGESESDGDPAGKLPLDISPLSKGPSCVSPLGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLSISPFGISPSSIDSPVAGTSIGGPPDEGASDGGPPDVGPFGISPPIIDPPGEDASDGDPPGKFPLDISPLGKCPSGVSPLGVGPPGVGPVIASPPGEGPLDAGPLGAGSLGISPLNIRRLGISPFGISPPNIDLPVAGTSIGGPLDEGASDGGPPDVGPFGISPSIIDPPGEGAFDGDPPGKLPLDISPVGKGPSGVSPPGAGPPGDGPVIASPPGESPLDAGPLGAGSLGISPFGISPPNIDWPVAGTSFGGPPGEGASNGGPLVVGPFDMPVVGASDGDALEKLPLDISLPGKGPSDVGPPGAGLPGAAPPGVDLSNVGASDRGASGEGASDGCPPDVGPFDICLLSIDPPVVGASDGGPPDEGASNGGPPDTDSFGGDPLCASPLGIDPPIVDASDGDPFGAGSPDEDPSNENASGEGASGESPPCSDVSCKGPSSAGASIGCSLDNGASTPSSPDTFLSNVFPSDKSSPDAFSPDVAALVTLPSGKDPFDISPPIVALLDVSPLGKTSSDAYSSGISPGIFEKSFPLVKLQTIEYM", "length": 1504 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9M2S0-1", "protein_name": "Probable mannose-1-phosphate guanylyltransferase 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKALILVGGFGTRLRPLTLSLPKPLVDFANKPMILHQIEALKAIGVDEVVLAINYEPEQLLVMSKFSNDVEATLGIKITCSQETEPLGTAGPLALARDKLVDGSGQPFFVLNSDVISDYPLEEMIAFHNAHGGEASIMVTKVDEPSKYGVVVMEEATGRVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEIFPQIAEAEKLYAMLLPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHILGNVLVDETAEIGEGCLIGPNVAIGPGCVVESGVRLSHCTVMRGVHVKRYACISSSIIGWHSTVGQWARVENMSILGKNVYVCDEIYCNGGVVLHNKEIKSDILKPDIVM", "length": 364 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9NR96-1", "protein_name": "Toll-like receptor 9", "gene_name": "TLR9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGFCRSALHPLSLLVQAIMLAMTLALGTLPAFLPCELQPHGLVNCNWLFLKSVPHFSMAAPRGNVTSLSLSSNRIHHLHDSDFAHLPSLRHLNLKWNCPPVGLSPMHFPCHMTIEPSTFLAVPTLEELNLSYNNIMTVPALPKSLISLSLSHTNILMLDSASLAGLHALRFLFMDGNCYYKNPCRQALEVAPGALLGLGNLTHLSLKYNNLTVVPRNLPSSLEYLLLSYNRIVKLAPEDLANLTALRVLDVGGNCRRCDHAPNPCMECPRHFPQLHPDTFSHLSRLEGLVLKDSSLSWLNASWFRGLGNLRVLDLSENFLYKCITKTKAFQGLTQLRKLNLSFNYQKRVSFAHLSLAPSFGSLVALKELDMHGIFFRSLDETTLRPLARLPMLQTLRLQMNFINQAQLGIFRAFPGLRYVDLSDNRISGASELTATMGEADGGEKVWLQPGDLAPAPVDTPSSEDFRPNCSTLNFTLDLSRNNLVTVQPEMFAQLSHLQCLRLSHNCISQAVNGSQFLPLTGLQVLDLSHNKLDLYHEHSFTELPRLEALDLSYNSQPFGMQGVGHNFSFVAHLRTLRHLSLAHNNIHSQVSQQLCSTSLRALDFSGNALGHMWAEGDLYLHFFQGLSGLIWLDLSQNRLHTLLPQTLRNLPKSLQVLRLRDNYLAFFKWWSLHFLPKLEVLDLAGNQLKALTNGSLPAGTRLRRLDVSCNSISFVAPGFFSKAKELRELNLSANALKTVDHSWFGPLASALQILDVSANPLHCACGAAFMDFLLEVQAAVPGLPSRVKCGSPGQLQGLSIFAQDLRLCLDEALSWDCFALSLLAVALGLGVPMLHHLCGWDLWYCFHLCLAWLPWRGRQSGRDEDALPYDAFVVFDKTQSAVADWVYNELRGQLEECRGRWALRLCLEERDWLPGKTLFENLWASVYGSRKTLFVLAHTDRVSGLLRASFLLAQQRLLEDRKDVVVLVILSPDGRRSRYVRLRQRLCRQSVLLWPHQPSGQRSFWAQLGMALTRDNHHFYNRNFCQGPTAE", "length": 1032 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9QUG3-1", "protein_name": "Prion-like protein doppel", "gene_name": "Prnd", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNRLGTWWVAILCMLLASHLSTVKARGIKHRFKWNRKVLPSSGGQITEARVAENRPGAFIKQGRKLDIDFGAEGNRYYAANYWQFPDGIYYEGCSEANVTKEMLVTSCVNATQAANQAEFSREKQDSKLHQRVLWRLIKEICSAKHCDFWLERGAALRVAVDQPAMVCLLGFVWFIVK", "length": 179 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9SAC9-1", "protein_name": "AP-1 complex subunit mu-1", "gene_name": "AP1M1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAGAASALFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSNIYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQFTEARILSEFIKTDAYRMEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM", "length": 428 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SCN2-1", "protein_name": "Cytochrome P450 71B31", "gene_name": "CYP71B31", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSMFLGLLFLFPLFFILFKNLLPPRKKLPPGPTGLPLIGNLHQLGRLLHSSLHKLSLEHGPVMLVRWGVVPMAVFSSNEAAKEVLKTHDLETCNRPKLVANGLFTHGYKDIGFTQYGEEWREMKKFVGLELFSPKKHKSFRYIREEEGDLLVKKISNYAQTQTLVDLRKSLFSYTASIIFREAFGQNFRECDYINMDKLEELVQETETNVCSLAFTDFFPRGLGWLVDRISGQHSRMNIAFSKLTTFFEDVIDELLKTKQLDDHSDLVTAMLDVINRPRKFGSLKITYDHLIAMMSDVVLAGVNAGTVTMIWTMTELTRHPRVMKKLQEEIRATLGPNKERITEEDLEKVEYLNLVIKESFRLHPPAPLLLPRETMSDIEIQGYHIPKNAHVKINTYAIGRDPKRWTNPEEFNPERFLNTSINYKGQHYELLPFGAGRRNCPGMTLGITILELGLLNILYYFDWSLPSGMTIKDIDMEEDGALNIAKKVPLQLVPTLP", "length": 498 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SJ39-1", "protein_name": "Cytochrome P450, family 705, subfamily A, polypeptide 6", "gene_name": "CYP705A6", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MAAILSVDFQNCFIFIVLCLFSLFCYSLFFKKPKHPRGCDLPPSPPSLPIIGHLHLLFSPLTHKSLQKLSSKYGHLLHLRIFNVPVILVSSASVAYEIFRAHDVNVSSRGVAAIDESLLFGSSGIITAPYGDYWKFMKKLIATKLLRPQSLESSRGIRGEELTRFYNSLLDKARMTESVEISTEAMKLVNNTLCRMSMGRSFSEENGEAEKIRGLVGESYALTKKMFLASLLRKPLKKLRISLFEKEIMGVSDRLDELLERILVEHEEKLHEEHQGTDMMDVLLAASGDENAEYNITRNHIKSFFVEIFIGATDTSVQTTQWTMAEILNHPNVLERLRKDIDSVVGKTRLIHETDLPNLPYLQAVVKEGLRLHPPGPLLVRTFQERCKIKGFYIPEKTTLVINAYAVMRDPDSWEDPDEFKPERFLRAPPMGGSLDKFIEFS", "length": 442 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SMT4-1", "protein_name": "Large ribosomal subunit protein eL13y", "gene_name": "RPL13C", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK", "length": 206 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SSB4-1", "protein_name": "26S proteasome regulatory subunit 7 homolog B", "gene_name": "RPT1B", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MIIRDIMEDPENEGPHNMRSDFEPLLSVLRLRDYETGDIIEFDSTEASEEALSDITEFGSTEASEAHFEEPYSARIKKVEKEINELAEKICNLGIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVKGYQKFSATPKYMAYYI", "length": 464 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SVM4-1", "protein_name": "Serine hydroxymethyltransferase 5", "gene_name": "SHM5", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEPVYSWGNTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRYYGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLDLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICGGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAPSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELCYITLNRNAVFGDTSFLAPGGVRIGTPAMTSRGLVEKDFEKIGEFLHRAVTITLDIQEQYGKVMKDFNKGLVNNKEIDEIKADVEEFTYDFDMPGFFISESRND", "length": 470 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SWH4-1", "protein_name": "Syntaxin-42", "gene_name": "SYP42", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATRNRTTVYRKHRDACKSARAPLSLSASDSFGGPVIEMVSGSFSRSNHSSYAPLNSYDPGPSSSDAFTIGMPPAWVDDSEEITFNIQKVRDKMNELAKAHSKALMPTFGDNKGIHREVEMLTHEITDLLRKSEKRLQMLSTRGPSEESNLRKNVQRSLATDLQNLSMELRRKQSTYLKRLQQQKEGQDEVDLEFNVNGKMSRLDEEDELGGMGFDEHQTIKLKEGQHVSAEREREIQQVLGSVNDLAQIMKDLSALVIDQGTIVDRIDYNVQNVSTSVEEGYKQLQKAERTQREGAMVKCATILLVLCLIMIVLLILKNILF", "length": 323 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SYN6-1", "protein_name": "SOUL heme-binding family protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEAALSIFKLSFLLTLLSGGSDLIDSLPPNCNRAECPSYEVVHAGNGYEIHRYNTTVWISTEPIQDISLNEASGNGWNQLSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSRYVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPFQWSQRVNEIWFPFEMEDEETVSIVTQ", "length": 225 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9SZB4-1", "protein_name": "Putative DEAD-box ATP-dependent RNA helicase 43", "gene_name": "RH43", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVDDGYVEYVPVEERLAQMKRKVVEEPGKGMMEHLSDKKKLMSVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPMEETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV", "length": 542 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0E0-1", "protein_name": "Putative ATPase, plasma membrane-like", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MATGDSLEDIKIEIDDDLEKIPIEEVFKKLRCSREGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLLEGDTLKVDQSALTGEFGPITKGPGEEVFSGTTCKQGEMEAVVIATGVHTFSGTTAHLVDNRTNKVGHFRKVVTEIENLCVISIAIGISIEVIVMYWIQRRNFSDVINNLLVLVIGGIPLAMPTVLYVIMVTGSLRLYRTGTITQRITAIEDMAAIDVLCSDKTGTLTLNKLSVDKNLIKVYSKDVEKEQVLLLAARASRIENRDGIDAAMVGSLADPKEARAGIREVHFNLVDKRTALTYIDGNGDWHRVSKGTPEQILDLCNARDDLRKSVHSAIRNYAERGLKSFAISWFRNTNCNTVFFFPYQLCSEHKYHIVNKLQERHICGLIGDGVDDVPSLKKADVGIAVANATEAARAASDIVLTEPGLSVIIDAVLASRAILQQMKHYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLAIALLNEETTKAITMDNVTNPSPTPDSLKLKEIFATGVVYGSYMALITVVFFWAAYRTDIFPRTFHVRDLRGNEAEMMCALYLQVSIMSQALFFVIQSRSWFFVERPGELLFLSFVTVQTIATTLAVYASWETARIEGIGWSWAGVIWLYNIIFFFPLDIMKFGIRYILTGKAQSLFDNMVHLVLNSYAKLSNGIYNHTQADHTYSLLEVSTPPSQDLRGVGWV", "length": 813 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9T0H7-1", "protein_name": "Histone H2A.8", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MVCNTNILKDVSTKISAFENVRMIMVEGEMFQVARIHKQLKNRVSAHSSVGATDVVYMTSILEYLTTEVLQLAENTSKDLKVKRITPRHLQLAIRGDEELDTLIKGTIIGGSVIPHIH", "length": 118 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VXF6-1", "protein_name": "Calnexin 14D", "gene_name": "Cnx14D", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAWKMLFAILLLLSAAKTGYLAPESENSVEDVQIEPGAIYGDEKFAYKSPVIDAEKFYFADHFDDVEASRKRWVLSQAKKNDIADEIAKYDGIWNWESPQRIFWANDLGLVLKSKAKHAAIAAPFRQPFDFKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNLKMHFIFRHVNPLNGNITEKHCKKPNARLGVPFTDKLPHLYQLVVRPDNSFEIRLDHKIIKEGSLLTDFVPPVNPPAEIDDPNDHKPESWDERKKIPDPNAHKPEDWDEDAPPHLPDTDAVMPNGWLEDEPDMIFDPTAIEPEDWNSEIDGEWEAPLVENPVCKKAPGCGKWKAPLIPNPNYKGKWSAPMIENPNNQGKWAPRKIANPDFFEDLKPFQMTPINAVGLELWSMSSDILFDNLIITDDVELARDFAANSFDIKRLYIDRESFGNKVVELARANRAIWGIVIVAIAVPVAITIFCKFGLGPSRVAAAKKAAAAAAKKTDDPQPDDDLGAEEEEKLEKGKKEEEKKEEEEEEEKEENKEEKKEEEKDDEKEMKDCEEEEDDEEKDDEEKTDERAAGDTNKESTPLSASPKKNQKSYLDNNEDEEDTLKNKEPTPKKRKRKALKE", "length": 639 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W240-1", "protein_name": "K Homology domain-containing protein", "gene_name": "cg3927", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "METPSELTEKQNQDQPTYQPRLNEVAQKFLADLDAERKRLSAEFPLCALLIDESVDRVYSTGRIPGKEPFADVYQQKPMKIIQKVFVPVNKFPKFNFTGKILGPKGNSLRRLQEETHCKIVIKGRNSMRDRNKEEELRSSGDPRYAHLHKDLFLEVSAVAPPAECYARIAYALAEIRKYLIPDDNDDVWHEQQRELMEMNPKSAKKSNGLNMAPYRSNFDKAIGAIRNRAPKYNNQIRRVTENPREVAYMEEVEYDYDEHLMFCSPVVRL", "length": 270 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W4G6-1", "protein_name": "Uncharacterized protein", "gene_name": "Dmel\\CG2861", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDYEIIEFVRRHISHIDISAETRMRYPDPISNNNFDWNSIGLGEQEDAIGQDQQSQALNENANNVSPDVPPSTIAEPTLEPSTIEGNQGQNPRIISSMPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNTESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESDTNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCDVETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKIRKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQNFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIGKIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGGTNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQSSESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPNGEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIPNSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQTAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPKAPRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAPRVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLETPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSNMPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMKSDGRIKQGRVSKPSLRFSPSSSSLRPVVRSLSSSSSSSSSWSSCTTCSTCSSCSTCSSSSDSSQSSRSRNRKRRSPKVPIPHKLFESNGEINFQLGQPTRLESPSPPPPVPMQACGTFEEHLTDLTLVRVHAISPLRSPTYDFDFDLPEPMLSEESSSSSSESNDESNVNCQMAPNSQNVSMHFLKVMVFYNCYVLFQQLEKKHQSLFEESSSSSSSESNDETNVNCQMTPNSQNQKKLQSAPIREPSPDQPPEAASRSSNGGTIGPCNLKAFRRDFMISNAENTGFTNPSELNLKKCATKVCTPMERNSGSQLPIQNRFILPNSNKEEGKMNVEPVMPKHKPSRIPIRTKTPIALNLMKEPEDNARKPKNILKPFFSNADVNPCSSTDYEPNFKPCESPLPAKQNDFKLINKDKKSWVSHYQEQESQELKENSFFYAKFNLPNIPKKSFKDSKANAERRCTKTFEDVRKEAQQSRYTKAINKRQNKKAMLESALGNAITEDPTVNCNLADNPNDQVEMPRNPDIVEPTVKPVKFKAFVSASIKPKSSKKRKLMNSASNSKLFKFKIFESEVNKDENEEEDVIPDNLIIPVKRKQNISELLDMQPSTSKAAATITSQPKIAQLKRMPSKLLNEKMKSYAKKRSNDDENKDTKNTGMHMHRYKIPKLSANKPQNTSTTQSPTRGFSRLPGMYQEPNFQNAQHPFSTRGYYPYQRAYPLHRPTSQYHMNQPQPLRLHHSMYVDAEPSFESVFPAPRYQPYNINPSMRHHYSYPGEPSPSTYPMGGIPFQNNNTLYPPMRNDLCYPRGRLNYPVRNLPPMNSQGTYPPNYPQNFLPNYPPSRQFLLSMQRLADINKQIASGSIESVGGFIQMAYAGRKYRTLKDLRERTMLSKDSLRKIFKCMCKIKRPKWRISKFYLYAYWCEISGIPQSSEFGKPLELNAAYRKVISSYAENKFLRMESLMEKTGFGKSKLKRVLKMIGRKRSTKWRLLNYRKPLIHLHRSQDM", "length": 1893 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9W6A5-1", "protein_name": "Green-sensitive opsin-1", "gene_name": "opn1mw1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MNGTEGSNFYIPMSNRTGLVRSPYDYTQYYLAEPWKFKALAFYMFLLIIFGFPINVLTLVVTAQHKKLRQPLNYILVNLAFAGTIMVIFGFTVSFYCSLVGYMALGPLGCVMEGFFATLGGQVALWSLVVLAIERYIVVCKPMGSFKFSANHAMAGIAFTWFMACSCAVPPLFGWSRYLPEGMQTSCGPDYYTLNPEYNNESYVMYMFSCHFCIPVTTIFFTYGSLVCTVKAAAAQQQESESTQKAEREVTRMVILMVLGFLFAWVPYASFAAWIFFNRGAAFSAQAMAVPAFFSKTSAVFNPIIYVLLNKQFRSCMLNTLFCGKSPLGDDESSSVSTSKTEVSSVSPA", "length": 349 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q9XK79-1", "protein_name": "NADH-ubiquinone oxidoreductase chain 4L", "gene_name": "nad4L", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MNLIDLILIAIYVIGISGLIFNKNNIINILIISELNLGTLGMLFVLASVELNDILGELSGLYILTFTAAESAIGLAIVVILYSKTGIINIRHLNKLKG", "length": 98 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9Y2B0-1", "protein_name": "Protein canopy homolog 2", "gene_name": "CNPY2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKGWGWLALLLGALLGTAWARRSQDLHCGACRALVDELEWEIAQVDPKKTIQMGSFRINPDGSQSVVEVPYARSEAHLTELLEEICDRMKEYGEQIDPSTHRKNYVRVVGRNGESSELDLQGIRIDSDISGTLKFACESIVEEYEDELIEFFSREADNVKDKLCSKRTDLCDHALHISHDEL", "length": 182 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1X0-1", "protein_name": "C-C motif chemokine 27", "gene_name": "Ccl27", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MMEGLSPASSLPLLLLLLSPAPEAALPLPSSTSCCTQLYRQPLPSRLLRRIVHMELQEADGDCHLQAVVLHLARRSVCVHPQNRSLARWLERQGKRLQGTVPSLNLVLQKKMYSHPQQQN", "length": 120 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "S4R2L0-1", "protein_name": "Secretoglobin, family 2B, member 12", "gene_name": "Scgb2b12", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKGILLLLGLLITGELSFQTTEACVPFFEVYASVLSGSRVWLYHELQSFDATAEEKVALEKIQGCYREERLRNILLEPKIMEAMVASPECRSYYSLDNFRSILDFISNLLGE", "length": 112 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "W4VSP8-1", "protein_name": "Vomeronasal type-1 receptor", "gene_name": "Vmn1r10", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSFKNVLYFQAGLGVLANMVLLLFYIFIILGHRPKPTDLISCQLTFVHIIMVLTGGDILLTDLFELLNIENDLKCKTIFYISRVMRGLSICTTCLLSVFQAVTISPNTSLMAKFKQKLKKYMACVFLCIWSFNLAFSTNRIFYVGGFTNVSETNQMQVTKSCSLLPMNIIIRGFIFTISTSRDVFLVGVMLTTSVYMVITMFRYHRQCKYLYSISHLRESPEKRATQTIVLLVSFFVVMYWVDFIISFTSDMIWMYDPLILTVQKFMMYAYPTITPLVQISSDNRIIIMLKNLQSKHQQRFFNKDIFFSL", "length": 311 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X1WF74-1", "protein_name": "Uncharacterized protein LOC100334758 precursor", "gene_name": "si:dkey-52p2.5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MARTSENMIGKVLFVLFLLSGPTSVLTDFHSLQILGTYIKGDTLFPQISFTFMLDDLTVGLYITERDEFIPRDNTTNEDETVSDMLDKIKNELQPLLKGTLIFQNSTESPQLFQIAWHCELLDNNKTGQMILKIAFSGSTTDEVSFYGNNFTCQCQNNMATVPLEYFQMQFKSIYYPVCMTTLGGYLVKRQVQVNRKVQPKVRLIKKVHPKSGGFRLSCLASEFYPYFINLTLLRDGQPVSDHEVTGGDLLPNGDGTYQMRKSLEIRADEREKHKYTCSAKHLDKNLDVDFEFDPSYPVKIVIPVVVLLSLVLVLTAVLIHKCMNKQAASPPEQQEPIEMGGRLRK", "length": 346 }, "evidence": [ { "id": "F2Z5L2", "url": "https://omabrowser.org/oma/group/F2Z5L2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ], "pmid": "" }, { "name": "structural constituent of chromatin", "id": "GO:0030527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030527", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ], "pmid": "" }, { "name": "nucleosome", "id": "GO:0000786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000786", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "heterochromatin formation", "id": "GO:0031507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031507", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L2", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5L2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" }, { "id": "PF00125", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00125" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Core Histone H2A/H2B/H3", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 89, "start_aa": "Gln", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z5L2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5L2" }, { "id": "PF16211", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Histone H2A C-terminal", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 126, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5L5-1", "uniprot_ac": "F2Z5L5", "uniprot_id": "F2Z5L5_PIG", "mass": { "chemical_mass": 13988.0, "monoisotopic_mass": 13988.0 }, "refseq": {}, "gene_names": [ { "name": "H2AC20", "type": "recommended", "evidence": [ { "id": "F2Z5L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ] } ], "protein_names": [ { "name": "Histone H2A", "type": "recommended", "evidence": [ { "id": "F2Z5L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "H2AC20", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5", "locus": { "chromosome": "4", "start_pos": 99168806, "end_pos": 99169195, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000034598", "url": "https://www.ensembl.org/id/ENSSSCG00000034598" } ] } } ], "crossref": [ { "id": "ENSSSCG00000034598", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034598", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00074", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00074", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "106510170", "url": "https://www.ncbi.nlm.nih.gov/gene/106510170", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002119", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002119", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007125", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007125", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032454", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032454", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032458", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032458", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:106510170", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106510170", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YWARRTA", "url": "https://omabrowser.org/oma/group/YWARRTA/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5L5", "url": "https://www.orthodb.org/?gene=F2Z5L5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00125", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00125", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16211", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16211", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-110330", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110330", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-110331", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110331", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-171306", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171306", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-201722", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-212300", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212300", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2299718", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2299718", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559580", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559582", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559582", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-2559586", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559586", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3214858", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214858", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-427359", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-427359", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5250924", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5578749", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578749", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5625886", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625886", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689603", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689880", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5689901", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689901", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-606279", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-68616", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68616", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73728", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73728", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-73772", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8936459", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8936459", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9018519", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9670095", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9670095", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9764725", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9841922", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9841922", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843940", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9843970", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843970", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9909649", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909649", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9940951", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9943411", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9943962", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943962", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9970672", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9970672", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5L5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK", "length": 129, "header": "tr|F2Z5L5-1|F2Z5L5_PIG Isoform 1 of Histone H2A OS=Sus scrofa OX=9823 GN=H2AC20 PE=1 SV=1 CANONICAL=F2Z5L5-1" }, "isoforms": [ { "isoform_ac": "F2Z5L5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5/entry#F2Z5L5-1", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK", "length": 129, "header": "tr|F2Z5L5-1|F2Z5L5_PIG Isoform 1 of Histone H2A OS=Sus scrofa OX=9823 GN=H2AC20 PE=1 SV=1 CANONICAL=F2Z5L5-1" }, "locus": { "chromosome": "4", "start_pos": 99169195, "end_pos": 99168809, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000007307.3", "url": "https://www.ensembl.org/id/ENSSSCT00000007307.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000007112.1", "url": "https://www.ensembl.org/id/ENSSSCP00000007112.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:106510170", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:106510170", "resource": "KEGG Pathway" }, { "id": "R-SSC-110330", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110330", "resource": "Reactome", "description": "Recognition and association of DNA glycosylase with site containing an affected purine" }, { "id": "R-SSC-110331", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-110331", "resource": "Reactome", "description": "Cleavage of the damaged purine" }, { "id": "R-SSC-171306", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-171306", "resource": "Reactome", "description": "Packaging Of Telomere Ends" }, { "id": "R-SSC-201722", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-201722", "resource": "Reactome", "description": "Formation of the beta-catenin:TCF transactivating complex" }, { "id": "R-SSC-212300", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-212300", "resource": "Reactome", "description": "PRC2 methylates histones and DNA" }, { "id": "R-SSC-2299718", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2299718", "resource": "Reactome", "description": "Condensation of Prophase Chromosomes" }, { "id": "R-SSC-2559580", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559580", "resource": "Reactome", "description": "Oxidative Stress Induced Senescence" }, { "id": "R-SSC-2559582", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559582", "resource": "Reactome", "description": "Senescence-Associated Secretory Phenotype (SASP)" }, { "id": "R-SSC-2559586", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2559586", "resource": "Reactome", "description": "DNA Damage/Telomere Stress Induced Senescence" }, { "id": "R-SSC-3214858", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3214858", "resource": "Reactome", "description": "RMTs methylate histone arginines" }, { "id": "R-SSC-427359", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-427359", "resource": "Reactome", "description": "SIRT1 negatively regulates rRNA expression" }, { "id": "R-SSC-5250924", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5250924", "resource": "Reactome", "description": "B-WICH complex positively regulates rRNA expression" }, { "id": "R-SSC-5578749", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5578749", "resource": "Reactome", "description": "Transcriptional regulation by small RNAs" }, { "id": "R-SSC-5625886", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5625886", "resource": "Reactome", "description": "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3" }, { "id": "R-SSC-5689603", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689603", "resource": "Reactome", "description": "UCH proteinases" }, { "id": "R-SSC-5689880", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689880", "resource": "Reactome", "description": "Ub-specific processing proteases" }, { "id": "R-SSC-5689901", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5689901", "resource": "Reactome", "description": "Metalloprotease DUBs" }, { "id": "R-SSC-606279", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-606279", "resource": "Reactome", "description": "Deposition of new CENPA-containing nucleosomes at the centromere" }, { "id": "R-SSC-68616", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-68616", "resource": "Reactome", "description": "Assembly of the ORC complex at the origin of replication" }, { "id": "R-SSC-73728", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73728", "resource": "Reactome", "description": "RNA Polymerase I Promoter Opening" }, { "id": "R-SSC-73772", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-73772", "resource": "Reactome", "description": "RNA Polymerase I Promoter Escape" }, { "id": "R-SSC-8936459", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8936459", "resource": "Reactome", "description": "RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function" }, { "id": "R-SSC-9018519", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9018519", "resource": "Reactome", "description": "Estrogen-dependent gene expression" }, { "id": "R-SSC-9670095", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9670095", "resource": "Reactome", "description": "Inhibition of DNA recombination at telomere" }, { "id": "R-SSC-9764725", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9764725", "resource": "Reactome", "description": "Negative Regulation of CDH1 Gene Transcription" }, { "id": "R-SSC-9841922", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9841922", "resource": "Reactome", "description": "MLL4 and MLL3 complexes regulate expression of PPARG target genes in adipogenesis and hepatic steatosis" }, { "id": "R-SSC-9843940", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843940", "resource": "Reactome", "description": "Regulation of endogenous retroelements by KRAB-ZFP proteins" }, { "id": "R-SSC-9843970", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9843970", "resource": "Reactome", "description": "Regulation of endogenous retroelements by the Human Silencing Hub (HUSH) complex" }, { "id": "R-SSC-9909649", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9909649", "resource": "Reactome", "description": "Regulation of PD-L1(CD274) transcription" }, { "id": "R-SSC-9940951", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9940951", "resource": "Reactome", "description": "Interaction of NuRD complexes with transcription factors" }, { "id": "R-SSC-9943411", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943411", "resource": "Reactome", "description": "CHD1 and CHD2 subfamily" }, { "id": "R-SSC-9943962", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9943962", "resource": "Reactome", "description": "CHD6, CHD7, CHD8, CHD9 subfamily" }, { "id": "R-SSC-9970672", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9970672", "resource": "Reactome", "description": "FXIIa activates plasma kallikrein-kinin system" } ], "orthologs": [ { "uniprot_canonical_ac": "G3HDU4-1", "protein_name": "Histone H2A", "gene_name": "LOC100760601", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F2Z5L5", "url": "https://omabrowser.org/oma/group/F2Z5L5/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P04911-1", "protein_name": "Histone H2A.1", "gene_name": "HTA1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSGGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKATKASQEL", "length": 132 }, "evidence": [ { "id": "F2Z5L5", "url": "https://omabrowser.org/oma/group/F2Z5L5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q6GSS7-1", "protein_name": "Histone H2A type 2-A", "gene_name": "Hist2h2aa1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F2Z5L5", "url": "https://omabrowser.org/oma/group/F2Z5L5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q93077-1", "protein_name": "Histone H2A type 1-C", "gene_name": "H2AC6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK", "length": 130 }, "evidence": [ { "id": "F2Z5L5", "url": "https://omabrowser.org/oma/group/F2Z5L5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9S9K7-1", "protein_name": "Probable histone H2AXb", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSSGAGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF", "length": 142 }, "evidence": [ { "id": "F2Z5L5", "url": "https://omabrowser.org/oma/group/F2Z5L5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ], "pmid": "" }, { "name": "protein heterodimerization activity", "id": "GO:0046982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046982", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ], "pmid": "" }, { "name": "structural constituent of chromatin", "id": "GO:0030527", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030527", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ], "pmid": "" }, { "name": "nucleosome", "id": "GO:0000786", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000786", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "heterochromatin formation", "id": "GO:0031507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031507", "evidence": [ { "database": "UniProtKB", "id": "F2Z5L5", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" }, { "id": "PF00125", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00125" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Core Histone H2A/H2B/H3", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 89, "start_aa": "Gln", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "F2Z5L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5L5" }, { "id": "PF16211", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16211" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Histone H2A C-terminal", "eco_id": "ECO_0000259", "start_pos": 92, "end_pos": 125, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5N5-1", "uniprot_ac": "F2Z5N5", "uniprot_id": "F2Z5N5_PIG", "mass": { "chemical_mass": 17256.0, "monoisotopic_mass": 17256.0 }, "refseq": {}, "gene_names": [ { "name": "RPL26L1", "type": "recommended", "evidence": [ { "id": "F2Z5N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" } ] } ], "protein_names": [ { "name": "Ribosomal protein L26 like 1", "type": "synonym", "evidence": [ { "id": "F2Z5N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5N5", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "RPL26L1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5", "locus": { "chromosome": "16", "start_pos": 51267479, "end_pos": 51276696, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016989", "url": "https://www.ensembl.org/id/ENSSSCG00000016989" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016989", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016989", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06089", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06089", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR005756", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005756", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005825", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005825", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008991", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008991", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014722", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014722", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041988", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041988", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "RRDYKIC", "url": "https://omabrowser.org/oma/group/RRDYKIC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR11143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00467", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00467", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16906", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16906", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-156827", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1799339", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6791226", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72689", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-72706", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975956", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975957", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954709", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954714", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9954716", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F2Z5N5", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5N5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELIEKMQE", "length": 145, "header": "tr|F2Z5N5-1|F2Z5N5_PIG Isoform 1 of Ribosomal protein L26 like 1 OS=Sus scrofa OX=9823 GN=RPL26L1 PE=1 SV=1 CANONICAL=F2Z5N5-1" }, "isoforms": [ { "isoform_ac": "F2Z5N5-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5/entry#F2Z5N5-1", "sequence": { "sequence": "MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEELIEKMQE", "length": 145, "header": "tr|F2Z5N5-1|F2Z5N5_PIG Isoform 1 of Ribosomal protein L26 like 1 OS=Sus scrofa OX=9823 GN=RPL26L1 PE=1 SV=1 CANONICAL=F2Z5N5-1" }, "locus": { "chromosome": "16", "start_pos": 51276261, "end_pos": 51267677, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000018499.5", "url": "https://www.ensembl.org/id/ENSSSCT00000018499.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017999.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017999.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N5", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-156827", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-156827", "resource": "Reactome", "description": "L13a-mediated translational silencing of Ceruloplasmin expression" }, { "id": "R-SSC-1799339", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1799339", "resource": "Reactome", "description": "SRP-dependent cotranslational protein targeting to membrane" }, { "id": "R-SSC-6791226", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6791226", "resource": "Reactome", "description": "Major pathway of rRNA processing in the nucleolus and cytosol" }, { "id": "R-SSC-72689", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72689", "resource": "Reactome", "description": "Formation of a pool of free 40S subunits" }, { "id": "R-SSC-72706", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72706", "resource": "Reactome", "description": "GTP hydrolysis and joining of the 60S ribosomal subunit" }, { "id": "R-SSC-975956", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975956", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)" }, { "id": "R-SSC-975957", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975957", "resource": "Reactome", "description": "Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)" }, { "id": "R-SSC-9954709", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954709", "resource": "Reactome", "description": "Ribosome Quality Control (RQC) complex extracts and degrades nascent peptide" }, { "id": "R-SSC-9954714", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954714", "resource": "Reactome", "description": "PELO:HBS1L and ABCE1 dissociate a ribosome on a non-stop mRNA" }, { "id": "R-SSC-9954716", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9954716", "resource": "Reactome", "description": "ZNF598 and the Ribosome-associated Quality Trigger (RQT) complex dissociate a ribosome stalled on a no-go mRNA" } ], "orthologs": [ { "uniprot_canonical_ac": "P05743-1", "protein_name": "Large ribosomal subunit protein uL24A", "gene_name": "RPL26A", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MAKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE", "length": 127 }, "evidence": [ { "id": "F2Z5N5", "url": "https://omabrowser.org/oma/group/F2Z5N5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P12749-1", "protein_name": "Large ribosomal subunit protein uL24", "gene_name": "Rpl26", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE", "length": 145 }, "evidence": [ { "id": "F2Z5N5", "url": "https://omabrowser.org/oma/group/F2Z5N5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P51414-1", "protein_name": "Large ribosomal subunit protein uL24z", "gene_name": "RPL26A", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQNVD", "length": 146 }, "evidence": [ { "id": "F2Z5N5", "url": "https://omabrowser.org/oma/group/F2Z5N5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N5", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N5", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "ribosomal large subunit biogenesis", "id": "GO:0042273", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042273", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N5", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" } ], "pmid": "" }, { "name": "cytoplasmic translation", "id": "GO:0002181", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002181", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N5", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "organelle membrane", "id": "GO:0031090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031090", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N5", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" } ], "pmid": "" }, { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "F2Z5N5", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 91, "end_pos": 93, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5N5" }, { "id": "SM00739", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00739" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KOW", "eco_id": "ECO_0000259", "start_pos": 48, "end_pos": 76, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 91, "end_pos": 93 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5R6-1", "uniprot_ac": "F2Z5R6", "uniprot_id": "F2Z5R6_PIG", "mass": { "chemical_mass": 136245.0, "monoisotopic_mass": 136245.0 }, "refseq": {}, "gene_names": [ { "name": "CAND1", "type": "recommended", "evidence": [ { "id": "F2Z5R6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ] } ], "protein_names": [ { "name": "Cullin associated and neddylation dissociated 1", "type": "synonym", "evidence": [ { "id": "F2Z5R6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CAND1", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6", "locus": { "chromosome": "5", "start_pos": 31700163, "end_pos": 31657501, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028869", "url": "https://www.ensembl.org/id/ENSSSCG00000028869" } ] } } ], "crossref": [ { "id": "F2Z5R6", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5R6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028869", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028869", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013932", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013932", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039852", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039852", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "XQGGLLV", "url": "https://omabrowser.org/oma/group/XQGGLLV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12696", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12696", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08623", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08623", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13513", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13513", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8951664", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5R6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKNLKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKDSSSTNLESMDTS", "length": 1229, "header": "tr|F2Z5R6-1|F2Z5R6_PIG Isoform 1 of Cullin associated and neddylation dissociated 1 OS=Sus scrofa OX=9823 GN=CAND1 PE=3 SV=3 CANONICAL=F2Z5R6-1" }, "isoforms": [ { "isoform_ac": "F2Z5R6-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6/entry#F2Z5R6-1", "sequence": { "sequence": "MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKNLKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISSNPELAAIFESIQKDSSSTNLESMDTS", "length": 1229, "header": "tr|F2Z5R6-1|F2Z5R6_PIG Isoform 1 of Cullin associated and neddylation dissociated 1 OS=Sus scrofa OX=9823 GN=CAND1 PE=3 SV=3 CANONICAL=F2Z5R6-1" }, "locus": { "chromosome": "5", "start_pos": 31695072, "end_pos": 31657933, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000083158.3", "url": "https://www.ensembl.org/id/ENSSSCT00000083158.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000071085.3", "url": "https://www.ensembl.org/id/ENSSSCP00000071085.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" }, { "id": "R-SSC-8951664", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8951664", "resource": "Reactome", "description": "Neddylation" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ], "pmid": "" }, { "name": "cullin-RING ubiquitin ligase complex", "id": "GO:0031461", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031461", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ], "pmid": "" }, { "name": "SCF complex assembly", "id": "GO:0010265", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010265", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R6", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1053, "end_pos": 1055, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 506, "end_pos": 508, "annotation": "n_glycosylation_sequon" }, { "start_pos": 679, "end_pos": 681, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5R6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1229, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5R6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5R6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5R6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5R6" }, { "id": "PF08623", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08623" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TATA-binding protein interacting (TIP20)", "eco_id": "ECO_0000259", "start_pos": 1039, "end_pos": 1201, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1053, "end_pos": 1055 }, { "start_pos": 224, "end_pos": 226 }, { "start_pos": 506, "end_pos": 508 }, { "start_pos": 679, "end_pos": 681 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5R9-1", "uniprot_ac": "F2Z5R9", "uniprot_id": "F2Z5R9_PIG", "mass": { "chemical_mass": 18124.0, "monoisotopic_mass": 18124.0 }, "refseq": { "ac": "XP_003133824", "name": "twist-related protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133824" }, "gene_names": [ { "name": "TWIST2", "type": "recommended", "evidence": [ { "id": "F2Z5R9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ] }, { "name": "TWIST2", "type": "synonym", "evidence": [ { "id": "XP_003133824", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133824" } ] } ], "protein_names": [ { "name": "Twist family bHLH transcription factor 2", "type": "synonym", "evidence": [ { "id": "F2Z5R9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9/entry#names_and_taxonomy" } ] }, { "name": "twist-related protein 2", "type": "synonym", "evidence": [ { "id": "XP_003133824", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133824" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TWIST2", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9", "locus": { "chromosome": "15", "start_pos": 138229289, "end_pos": 138228807, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016343", "url": "https://www.ensembl.org/id/ENSSSCG00000016343" } ] } } ], "crossref": [ { "id": "cd19700", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19700", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100519927", "url": "https://www.ncbi.nlm.nih.gov/gene/100519927", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036638", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036638", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047094", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047094", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050283", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050283", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100519927", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519927", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MPHTASI", "url": "https://omabrowser.org/oma/group/MPHTASI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5R9", "url": "https://www.orthodb.org/?gene=F2Z5R9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23349", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23349:SF70", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23349:SF70", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003133824", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003133824", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5R9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH", "length": 160, "header": "tr|F2Z5R9-1|F2Z5R9_PIG Isoform 1 of Twist family bHLH transcription factor 2 OS=Sus scrofa OX=9823 GN=TWIST2 PE=4 SV=1 CANONICAL=F2Z5R9-1" }, "isoforms": [ { "isoform_ac": "F2Z5R9-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9/entry#F2Z5R9-1", "sequence": { "sequence": "MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH", "length": 160, "header": "tr|F2Z5R9-1|F2Z5R9_PIG Isoform 1 of Twist family bHLH transcription factor 2 OS=Sus scrofa OX=9823 GN=TWIST2 PE=4 SV=1 CANONICAL=F2Z5R9-1" }, "locus": { "chromosome": "15", "start_pos": 138229286, "end_pos": 138228807, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017798.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017798.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000076608.1", "url": "https://www.ensembl.org/id/ENSSSCP00000076608.1" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 46, "start_aa": "Thr", "end_pos": 46, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr46", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100519927", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100519927", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P97831-1", "protein_name": "Twist-related protein 2", "gene_name": "Twist2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH", "length": 160 }, "evidence": [ { "id": "F2Z5R9", "url": "https://omabrowser.org/oma/group/F2Z5R9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8WVJ9-1", "protein_name": "Twist-related protein 2", "gene_name": "TWIST2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH", "length": 160 }, "evidence": [ { "id": "F2Z5R9", "url": "https://omabrowser.org/oma/group/F2Z5R9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" }, { "name": "positive regulation of cell migration", "id": "GO:0030335", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030335", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" }, { "name": "developmental process", "id": "GO:0032502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032502", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" }, { "name": "negative regulation of osteoblast differentiation", "id": "GO:0045668", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045668", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein dimerization activity", "id": "GO:0046983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046983", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "F2Z5R9", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5R9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5R9" }, { "id": "PS50888", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50888" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BHLH", "eco_id": "ECO_0000259", "start_pos": 66, "end_pos": 117, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 46 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5T7-1", "uniprot_ac": "F2Z5T7", "uniprot_id": "F2Z5T7_PIG", "mass": { "chemical_mass": 18155.0, "monoisotopic_mass": 18155.0 }, "refseq": { "ac": "XP_001925960", "name": "peptidyl-prolyl cis-trans isomerase-like 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925960" }, "gene_names": [ { "name": "PPIL3", "type": "recommended", "evidence": [ { "id": "F2Z5T7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7" } ] }, { "name": "PPIL3", "type": "synonym", "evidence": [ { "id": "XP_001925960", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925960" } ] } ], "protein_names": [ { "name": "Peptidyl-prolyl cis-trans isomerase", "type": "recommended", "evidence": [ { "id": "F2Z5T7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7/entry#names_and_taxonomy" } ] }, { "name": "5.2.1.8", "type": "synonym", "evidence": [ { "id": "F2Z5T7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7/entry#names_and_taxonomy" } ] }, { "name": "PPIase", "type": "synonym", "evidence": [ { "id": "F2Z5T7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7/entry#names_and_taxonomy" } ] }, { "name": "peptidyl-prolyl cis-trans isomerase-like 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_001925960", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925960" } ] } ], "function": [ { "annotation": "PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved in pre-mRNA splicing.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T7", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7#function" }, { "database": "UniProtKB", "id": "ARBA00058414", "url": "https://www.uniprot.org/uniprotkb/ARBA00058414#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5T7", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "PPIL3", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7", "locus": { "chromosome": "15", "start_pos": 104569147, "end_pos": 104583683, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000016096", "url": "https://www.ensembl.org/id/ENSSSCG00000016096" } ] } } ], "crossref": [ { "id": "ENSSSCG00000016096", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000016096", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd01928", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01928", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100156964", "url": "https://www.ncbi.nlm.nih.gov/gene/100156964", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044666", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044666", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100156964", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156964", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VPFHRVM", "url": "https://omabrowser.org/oma/group/VPFHRVM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5T7", "url": "https://www.orthodb.org/?gene=F2Z5T7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45625", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45625", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45625:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45625:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00160", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00160", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-72163", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_001925960", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_001925960", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "16237", "url": "https://www.rhea-db.org/rhea/16237", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "F2Z5T7", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5T7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ", "length": 161, "header": "tr|F2Z5T7-1|F2Z5T7_PIG Isoform 1 of Peptidyl-prolyl cis-trans isomerase OS=Sus scrofa OX=9823 GN=PPIL3 PE=1 SV=1 CANONICAL=F2Z5T7-1" }, "isoforms": [ { "isoform_ac": "F2Z5T7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7/entry#F2Z5T7-1", "sequence": { "sequence": "MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ", "length": 161, "header": "tr|F2Z5T7-1|F2Z5T7_PIG Isoform 1 of Peptidyl-prolyl cis-trans isomerase OS=Sus scrofa OX=9823 GN=PPIL3 PE=1 SV=1 CANONICAL=F2Z5T7-1" }, "locus": { "chromosome": "15", "start_pos": 104582695, "end_pos": 104569389, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000017525.5", "url": "https://www.ensembl.org/id/ENSSSCT00000017525.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000017053.2", "url": "https://www.ensembl.org/id/ENSSSCP00000017053.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T7", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100156964", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100156964", "resource": "KEGG Pathway" }, { "id": "R-SSC-72163", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-72163", "resource": "Reactome", "description": "mRNA Splicing - Major Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7FBJ9-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase", "gene_name": "Ppil3", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MKLGGSGPVRFASDSRDLHEVARTAAGFLEPSRGRMSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ", "length": 196 }, "evidence": [ { "id": "F2Z5T7", "url": "https://omabrowser.org/oma/group/F2Z5T7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "E1B9G4-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase", "gene_name": "PPIL3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ", "length": 161 }, "evidence": [ { "id": "F2Z5T7", "url": "https://omabrowser.org/oma/group/F2Z5T7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54E95-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "ppil3", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSVTLHTSLGDIKVEIFCDSVPLASENFLALCASNYYNNTIFHRNIKGFMIQGGDPTNTGRGGESIWKKQFKDEFPSHLKHNTRGILSMANSGPDTNGSQFFITYGKHRSLNKVYTVFGKIIAGIEVLDLMEKVPVDDKDLPLNEIILKSVTIHANPIANQ", "length": 161 }, "evidence": [ { "id": "F2Z5T7", "url": "https://omabrowser.org/oma/group/F2Z5T7/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q5ZLV2-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAVTLHTDVGDIKIELFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPLGTGKGGTSIWGKKFEDEFSEYLKHSVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAL", "length": 161 }, "evidence": [ { "id": "F2Z5T7", "url": "https://omabrowser.org/oma/group/F2Z5T7/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q812D3-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "Ppil3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ", "length": 161 }, "evidence": [ { "id": "F2Z5T7", "url": "https://omabrowser.org/oma/group/F2Z5T7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D6L8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "Ppil3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCVFHRNIKGFMVQTGDPTGTGRGGSSIWAKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ", "length": 161 }, "evidence": [ { "id": "F2Z5T7", "url": "https://omabrowser.org/oma/group/F2Z5T7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H2H8-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase-like 3", "gene_name": "PPIL3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPFAQ", "length": 161 }, "evidence": [ { "id": "F2Z5T7", "url": "https://omabrowser.org/oma/group/F2Z5T7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9LPC7-1", "protein_name": "Peptidyl-prolyl cis-trans isomerase CYP18-1", "gene_name": "CYP18-1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MSVTLHTNLGDIKCEIFCDEVPKSAENFLALCASGYYDGTIFHRNIKGFMIQGGDPKGTGKGGTSIWGKKFNDEIRDSLKHNARGMLSMANSGPNTNGSQFFITYAKQPHLNGLYTIFGKVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG", "length": 160 }, "evidence": [ { "id": "F2Z5T7", "url": "https://omabrowser.org/oma/group/F2Z5T7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein folding", "id": "GO:0006457", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006457", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T7", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "catalytic step 2 spliceosome", "id": "GO:0071013", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071013", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T7", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "peptidyl-prolyl cis-trans isomerase activity", "id": "GO:0003755", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003755", "evidence": [ { "database": "UniProtKB", "id": "F2Z5T7", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "16237", "name": "", "equation": "[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "16237", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/16237" } ] }, { "id": "R-SSC-9770141", "name": "Formation of the Spliceosomal C* complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-5688092", "R-SSC-5688093", "R-SSC-72073", "R-SSC-9769591", "R-SSC-9769593", "R-SSC-9769594", "R-SSC-9769596", "R-SSC-9769598", "R-SSC-9769599", "R-SSC-9769601" ], "output_participant_list": [ "R-SSC-72060", "R-SSC-8867898", "R-SSC-9770419", "R-SSC-9770425", "R-SSC-9770427", "R-SSC-9770428", "R-SSC-9770430" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9770141", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770141" } ] }, { "id": "R-SSC-9770236", "name": "Formation of the Spliceosomal P complex and exon ligation", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-9769588", "R-SSC-9769590", "R-SSC-9769602" ], "output_participant_list": [ "R-SSC-6791189", "R-SSC-8849139", "R-SSC-8952113", "R-SSC-9769562" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9770236", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770236" } ] }, { "id": "R-SSC-9770847", "name": "Spliceosomal P complex dissociates yielding the intron-containing complex (ILS) and the spliced mRNP (new)", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [ "R-SSC-5688097", "R-SSC-8869310", "R-SSC-8869311", "R-SSC-9770846" ], "output_participant_list": [ "R-SSC-3900136", "R-SSC-6814858", "R-SSC-8865888", "R-SSC-8865956", "R-SSC-8952110", "R-SSC-9769561", "R-SSC-8867893", "R-SSC-9769592" ], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9770847", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9770847" } ] }, { "id": "R-SSC-9794542", "name": "Formation of the Spliceosomal C complex containing intron lariat", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "nucleoplasm", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-9794542", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9794542" } ] } ], "reaction_participants": [ { "participant_id": "R-SSC-3900136", "participant_name": "DDX5 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000043632", "database": "ENSEMBL", "url": "" }, { "id": "87226", "database": "VGNC", "url": "" }, { "id": "A0A287AHW6", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000032092", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000038465", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-5688092", "participant_name": "DHX8 [nucleoplasm]", "crossref": [ { "id": "F1S1H3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000017378", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000018412", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000018917", "database": "ENSEMBL", "url": "" }, { "id": "87298", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-5688093", "participant_name": "PRPF18 [nucleoplasm]", "crossref": [ { "id": "A0A4X1VY37", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000026354", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000027625", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000024330", "database": "ENSEMBL", "url": "" }, { "id": "NP_001231788.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-5688097", "participant_name": "DHX15 [nucleoplasm]", "crossref": [ { "id": "F1S5A8", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000008756", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000009333", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000009580", "database": "ENSEMBL", "url": "" }, { "id": "87286", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-6791189", "participant_name": "MTREX [nucleoplasm]", "crossref": [ { "id": "F1SLL6", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000017920", "database": "ENSEMBL", "url": "" }, { "id": "90470", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000018417", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000016911", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-6814858", "participant_name": "SRRT [nucleoplasm]", "crossref": [ { "id": "I3LI05", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000023704", "database": "ENSEMBL", "url": "" }, { "id": "93471", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000024767", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000024789", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-72060", "participant_name": "DHX38 [nucleoplasm]", "crossref": [ { "id": "F1S3A8", "database": "UniProt", "url": "" }, { "id": "XP_020949516.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000002966", "database": "ENSEMBL", "url": "" }, { "id": "87294", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000003045", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000002748", "database": "ENSEMBL", "url": "" }, { "id": "XP_020949515.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-72073", "participant_name": "SLU7 [nucleoplasm]", "crossref": [ { "id": "F1RR54", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000017033", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000018045", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000018545", "database": "ENSEMBL", "url": "" }, { "id": "XP_003134141.1", "database": "RefSeq", "url": "" }, { "id": "93214", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-8849139", "participant_name": "DDX39B [nucleoplasm]", "crossref": [ { "id": "XP_005665850.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000001487", "database": "ENSEMBL", "url": "" }, { "id": "NP_001005157.1", "database": "RefSeq", "url": "" }, { "id": "Q29024", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000001529", "database": "ENSEMBL", "url": "" }, { "id": "XP_005665851.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCG00000001400", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-8865888", "participant_name": "SRRM2 [nucleoplasm]", "crossref": [ { "id": "ENSSSCG00000023304", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000051053", "database": "ENSEMBL", "url": "" }, { "id": "93468", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000041895", "database": "ENSEMBL", "url": "" }, { "id": "A0A287ADD0", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-8865956", "participant_name": "CWC22 [nucleoplasm]", "crossref": [ { "id": "XP_003133562.2", "database": "RefSeq", "url": "" }, { "id": "XP_013839769.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000016961", "database": "ENSEMBL", "url": "" }, { "id": "A0A4X1TWU8", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000016008", "database": "ENSEMBL", "url": "" }, { "id": "XP_005672046.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000017430", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-8867893", "participant_name": "PPWD1 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000017953", "database": "ENSEMBL", "url": "" }, { "id": "NP_001231350.1", "database": "RefSeq", "url": "" }, { "id": "F1SKT8", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000016945", "database": "ENSEMBL", "url": "" }, { "id": "91766", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000018453", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-8867898", "participant_name": "CWC25 [nucleoplasm]", "crossref": [ { "id": "ENSSSCT00000053706", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000021478", "database": "ENSEMBL", "url": "" }, { "id": "87096", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000032040", "database": "ENSEMBL", "url": "" }, { "id": "A0A286ZKR9", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-8869310", "participant_name": "TFIP11 [nucleoplasm]", "crossref": [ { "id": "Q06AK6", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000009962", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000010632", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000010917", "database": "ENSEMBL", "url": "" }, { "id": "XP_020927865.1", "database": "RefSeq", "url": "" }, { "id": "XP_020927864.1", "database": "RefSeq", "url": "" }, { "id": "NP_001070682.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-8869311", "participant_name": "GCFC2 [nucleoplasm]", "crossref": [ { "id": "I3LDF5", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000021287", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000022086", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000031635", "database": "ENSEMBL", "url": "" }, { "id": "XP_020942970.1", "database": "RefSeq", "url": "" }, { "id": "88382", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-8952110", "participant_name": "PPIL3 [nucleoplasm]", "crossref": [ { "id": "XP_013839835.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000017525", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000016096", "database": "ENSEMBL", "url": "" }, { "id": "XP_001926016.1", "database": "RefSeq", "url": "" }, { "id": "XP_005672124.1", "database": "RefSeq", "url": "" }, { "id": "103073", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000017053", "database": "ENSEMBL", "url": "" }, { "id": "XP_001925960.1", "database": "RefSeq", "url": "" }, { "id": "F2Z5T7", "database": "UniProt", "url": "" }, { "id": "XP_005672126.1", "database": "RefSeq", "url": "" }, { "id": "XP_005672125.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-8952113", "participant_name": "PPIL4 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000023314", "database": "ENSEMBL", "url": "" }, { "id": "91699", "database": "VGNC", "url": "" }, { "id": "I3LGX0", "database": "UniProt", "url": "" }, { "id": "ENSSSCT00000024741", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000028867", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769561", "participant_name": "CCDC12 [nucleoplasm]", "crossref": [ { "id": "A0A8W4FDT6", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000077421", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000093297", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000011329", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769562", "participant_name": "PPIL2 [nucleoplasm]", "crossref": [ { "id": "ENSSSCG00000010083", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000056926", "database": "ENSEMBL", "url": "" }, { "id": "91698", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000040807", "database": "ENSEMBL", "url": "" }, { "id": "A0A287AAH2", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-9769588", "participant_name": "C1H9orf78 [nucleoplasm]", "crossref": [ { "id": "F1RQE0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000030426", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000022510", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000024953", "database": "ENSEMBL", "url": "" }, { "id": "85975", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769590", "participant_name": "LENG1 [nucleoplasm]", "crossref": [ { "id": "F1RNH2", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000003265", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000003541", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000003626", "database": "ENSEMBL", "url": "" }, { "id": "XP_003127463.2", "database": "RefSeq", "url": "" }, { "id": "89680", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769591", "participant_name": "CACTIN [nucleoplasm]", "crossref": [ { "id": "A0A287BJU2", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000032085", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000056347", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000037250", "database": "ENSEMBL", "url": "" }, { "id": "86131", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769592", "participant_name": "PPIG [nucleoplasm]", "crossref": [ { "id": "XP_005671972.1", "database": "RefSeq", "url": "" }, { "id": "XP_020931930.1", "database": "RefSeq", "url": "" }, { "id": "XP_005671971.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCP00000047092", "database": "ENSEMBL", "url": "" }, { "id": "XP_020931929.1", "database": "RefSeq", "url": "" }, { "id": "A0A4X1VJX6", "database": "UniProt", "url": "" }, { "id": "XP_020931927.1", "database": "RefSeq", "url": "" }, { "id": "XP_005671973.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCG00000031123", "database": "ENSEMBL", "url": "" }, { "id": "XP_001926896.1", "database": "RefSeq", "url": "" }, { "id": "XP_020931928.1", "database": "RefSeq", "url": "" }, { "id": "ENSSSCT00000066047", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769593", "participant_name": "SDE2 [nucleoplasm]", "crossref": [ { "id": "A0A8W4FFC9", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000010858", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000078134", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000092221", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9769594", "participant_name": "PRKRIP1 [nucleoplasm]", "crossref": [ { "id": "A0A5G2QNT3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000042324", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000065720", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000069793", "database": "ENSEMBL", "url": "" }, { "id": "XP_005661993.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9769596", "participant_name": "STEEP1 [nucleoplasm]", "crossref": [ { "id": "F2Z566", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000012622", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000013420", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000013801", "database": "ENSEMBL", "url": "" }, { "id": "87113", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769598", "participant_name": "FAM32A [nucleoplasm]", "crossref": [ { "id": "A0A4X1UYF2", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000013855", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000014729", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000015134", "database": "ENSEMBL", "url": "" }, { "id": "NP_001230816.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9769599", "participant_name": "FAM50A [nucleoplasm]", "crossref": [ { "id": "A0A5G2QKU3", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000025303", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000064609", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000089389", "database": "ENSEMBL", "url": "" }, { "id": "87972", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769601", "participant_name": "DDX41 [nucleoplasm]", "crossref": [ { "id": "A0A287AWY6", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000032642", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000048662", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000059325", "database": "ENSEMBL", "url": "" }, { "id": "87221", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9769602", "participant_name": "NKAP [nucleoplasm]", "crossref": [ { "id": "A0A5G2RJX5", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000012613", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000072270", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000085170", "database": "ENSEMBL", "url": "" }, { "id": "90756", "database": "VGNC", "url": "" } ] }, { "participant_id": "R-SSC-9770419", "participant_name": "GPATCH1 [nucleoplasm]", "crossref": [ { "id": "ENSSSCP00000003085", "database": "ENSEMBL", "url": "" }, { "id": "XP_020949947.1", "database": "RefSeq", "url": "" }, { "id": "F1RNW7", "database": "UniProt", "url": "" }, { "id": "88573", "database": "VGNC", "url": "" }, { "id": "ENSSSCT00000003166", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000002865", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9770425", "participant_name": "WDR70 [nucleoplasm]", "crossref": [ { "id": "ENSSSCT00000018344", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000016846", "database": "ENSEMBL", "url": "" }, { "id": "94937", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000017848", "database": "ENSEMBL", "url": "" }, { "id": "F1SN94", "database": "UniProt", "url": "" }, { "id": "XP_020932620.1", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9770427", "participant_name": "DHX35 [nucleoplasm]", "crossref": [ { "id": "95678", "database": "VGNC", "url": "" }, { "id": "ENSSSCG00000007352", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000063112", "database": "ENSEMBL", "url": "" }, { "id": "A0A287B5Q0", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000051779", "database": "ENSEMBL", "url": "" }, { "id": "XP_001929057.3", "database": "RefSeq", "url": "" } ] }, { "participant_id": "R-SSC-9770428", "participant_name": "NSRP1 [nucleoplasm]", "crossref": [ { "id": "A0A8D1TUT0", "database": "UniProt", "url": "" }, { "id": "ENSSSCP00000018853", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000019367", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCG00000017795", "database": "ENSEMBL", "url": "" } ] }, { "participant_id": "R-SSC-9770430", "participant_name": "YJU2 [nucleoplasm]", "crossref": [ { "id": "ENSSSCG00000013499", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000072636", "database": "ENSEMBL", "url": "" }, { "id": "95033", "database": "VGNC", "url": "" }, { "id": "ENSSSCP00000068755", "database": "ENSEMBL", "url": "" }, { "id": "A0A5G2QX80", "database": "UniProt", "url": "" } ] }, { "participant_id": "R-SSC-9770846", "participant_name": "CWF19L2 [nucleoplasm]", "crossref": [ { "id": "A0A5K1V0N0", "database": "UniProt", "url": "" }, { "id": "ENSSSCG00000028201", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCP00000028057", "database": "ENSEMBL", "url": "" }, { "id": "ENSSSCT00000026318", "database": "ENSEMBL", "url": "" }, { "id": "96726", "database": "VGNC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5T7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5T7" }, { "id": "PS50072", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50072" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PPIase cyclophilin-type", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 154, "start_aa": "His", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5U0-1", "uniprot_ac": "F2Z5U0", "uniprot_id": "F2Z5U0_PIG", "mass": { "chemical_mass": 15015.0, "monoisotopic_mass": 15015.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Ubiquitin-ribosomal protein eS31 fusion protein", "type": "recommended", "evidence": [ { "id": "F2Z5U0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of the 40S subunit of the ribosome. Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U0", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0#function" }, { "database": "UniProtKB", "id": "ARBA00045528", "url": "https://www.uniprot.org/uniprotkb/ARBA00045528#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5U0", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0", "locus": {} } ], "crossref": [ { "id": "F2Z5U0", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5U0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000022357", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000022357", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "3J7P", "url": "https://www.ncbi.nlm.nih.gov/Structure/icn3d/?mmdbid=3J7P&bu=0", "database": "iCn3D", "categories": [ "3D Structure" ] }, { "id": "IPR000626", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000626", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038582", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038582", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10666", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10666", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "pdb_00003j7p", "url": "https://www.rcsb.org/structure/pdb_00003j7p", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "3J7P", "url": "https://www.rcsb.org/structure/3J7P", "database": "PDB", "categories": [ "3D Structure" ] }, { "id": "PF01599", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01599", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F2Z5U0", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5U0-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "SQVEPSDAIEKETTKTQEKAGIPPERQRPIFAGKQPEDGHTKESTLHLVVRRREKEEVFHHSQKEQQRRKKVKLAVLKYDMGDENGKISPLPWQRPSGECGAGVFPASHFDRHYCGTYYLTYCFNKSEDK", "length": 130, "header": "tr|F2Z5U0-1|F2Z5U0_PIG Isoform 1 of Ubiquitin-ribosomal protein eS31 fusion protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=F2Z5U0-1" }, "isoforms": [ { "isoform_ac": "F2Z5U0-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0/entry#F2Z5U0-1", "sequence": { "sequence": "SQVEPSDAIEKETTKTQEKAGIPPERQRPIFAGKQPEDGHTKESTLHLVVRRREKEEVFHHSQKEQQRRKKVKLAVLKYDMGDENGKISPLPWQRPSGECGAGVFPASHFDRHYCGTYYLTYCFNKSEDK", "length": 130, "header": "tr|F2Z5U0-1|F2Z5U0_PIG Isoform 1 of Ubiquitin-ribosomal protein eS31 fusion protein OS=Sus scrofa OX=9823 GN= PE=1 SV=2 CANONICAL=F2Z5U0-1" }, "locus": { "chromosome": "3", "start_pos": 112563494, "end_pos": 112562785, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000026044.2", "url": "https://www.ensembl.org/id/ENSSSCT00000026044.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000028049.2", "url": "https://www.ensembl.org/id/ENSSSCP00000028049.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "Structure of the mammalian ribosome-Sec61 complex to 3.4 A resolution.", "journal": "Cell", "date": "2014", "authors": "Voorhees Rebecca M, Fern\u00e1ndez Israel S, Scheres Sjors H W, Hegde Ramanujan S", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U0", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0" } ], "reference": [ { "type": "PubMed", "id": "24930395", "url": "https://glygen.org/publication/PubMed/24930395" } ] }, { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U0", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U0", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "ribosome", "id": "GO:0005840", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005840", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U0", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0" } ], "pmid": "" }, { "name": "ribonucleoprotein complex", "id": "GO:1990904", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990904", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U0", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U0", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 125, "end_pos": 127, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5U0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 130, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5U0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5U0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5U0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5U0" }, { "id": "PS50053", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50053" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ubiquitin-like", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 41, "start_aa": "Ser", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 125, "end_pos": 127 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5U3-1", "uniprot_ac": "F2Z5U3", "uniprot_id": "F2Z5U3_PIG", "mass": { "chemical_mass": 34957.0, "monoisotopic_mass": 34957.0 }, "refseq": {}, "gene_names": [ { "name": "WDR82", "type": "recommended", "evidence": [ { "id": "F2Z5U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 82", "type": "recommended", "evidence": [ { "id": "F2Z5U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "WDR82", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3", "locus": { "chromosome": "13", "start_pos": 34387808, "end_pos": 34412140, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011433", "url": "https://www.ensembl.org/id/ENSSSCG00000011433" } ] } } ], "crossref": [ { "id": "F2Z5U3", "url": "https://alphafold.ebi.ac.uk/entry/F2Z5U3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011433", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011433", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056551", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056551", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19861", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19861", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19861:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19861:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23098", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23098", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-9772755", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9772755", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-9930044", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5U3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMDHLCAPGRS", "length": 313, "header": "tr|F2Z5U3-1|F2Z5U3_PIG Isoform 1 of WD repeat-containing protein 82 OS=Sus scrofa OX=9823 GN=WDR82 PE=1 SV=2 CANONICAL=F2Z5U3-1" }, "isoforms": [ { "isoform_ac": "F2Z5U3-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3/entry#F2Z5U3-1", "sequence": { "sequence": "MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMIGSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMDHLCAPGRS", "length": 313, "header": "tr|F2Z5U3-1|F2Z5U3_PIG Isoform 1 of WD repeat-containing protein 82 OS=Sus scrofa OX=9823 GN=WDR82 PE=1 SV=2 CANONICAL=F2Z5U3-1" }, "locus": { "chromosome": "13", "start_pos": 34411867, "end_pos": 34391666, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000012513.5", "url": "https://www.ensembl.org/id/ENSSSCT00000012513.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012185.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012185.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-9772755", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9772755", "resource": "Reactome", "description": "Formation of WDR5-containing histone-modifying complexes" }, { "id": "R-SSC-9930044", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-9930044", "resource": "Reactome", "description": "Nuclear RNA decay" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "negative regulation of DNA-templated transcription, elongation", "id": "GO:0032785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032785", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "DNA-templated transcription termination", "id": "GO:0006353", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006353", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "RNA polymerase II promoter clearance", "id": "GO:0001111", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001111", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "positive regulation of transcription elongation by RNA polymerase II", "id": "GO:0032968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032968", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "nuclear RNA surveillance", "id": "GO:0071027", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071027", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "lncRNA catabolic process", "id": "GO:0110064", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0110064", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "negative regulation of lncRNA transcription", "id": "GO:0140744", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140744", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chromatin binding", "id": "GO:0003682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003682", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "lncRNA binding", "id": "GO:0106222", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0106222", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "Set1C/COMPASS complex", "id": "GO:0048188", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048188", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "PTW/PP1 phosphatase complex", "id": "GO:0072357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072357", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" }, { "name": "chromosome, telomeric region", "id": "GO:0000781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000781", "evidence": [ { "database": "UniProtKB", "id": "F2Z5U3", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F2Z5U3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 313, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F2Z5U3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F2Z5U3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5U3" }, { "id": "PF23098", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23098" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleolar protein 10-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 265, "start_aa": "Lys", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 214, "end_pos": 216 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F2Z5V7-1", "uniprot_ac": "F2Z5V7", "uniprot_id": "F2Z5V7_PIG", "mass": { "chemical_mass": 12699.0, "monoisotopic_mass": 12699.0 }, "refseq": { "ac": "XP_003129897", "name": "mitochondrial import inner membrane translocase subunit Tim8 B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129897" }, "gene_names": [ { "name": "TIMM8B", "type": "recommended", "evidence": [ { "id": "F2Z5V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7" } ] }, { "name": "TIMM8B", "type": "synonym", "evidence": [ { "id": "XP_003129897", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129897" } ] } ], "protein_names": [ { "name": "Mitochondrial import inner membrane translocase subunit", "type": "recommended", "evidence": [ { "id": "F2Z5V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7/entry#names_and_taxonomy" } ] }, { "name": "mitochondrial import inner membrane translocase subunit Tim8 B", "type": "synonym", "evidence": [ { "id": "XP_003129897", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129897" } ] } ], "function": [ { "annotation": "Mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V7", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7#function" }, { "database": "UniProtKB", "id": "RU367043", "url": "https://www.uniprot.org/uniprotkb/RU367043#function" } ] }, { "annotation": "Probable mitochondrial intermembrane chaperone that participates in the import and insertion of some multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V7", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7#function" }, { "database": "UniProtKB", "id": "ARBA00058391", "url": "https://www.uniprot.org/uniprotkb/ARBA00058391#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F2Z5V7", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TIMM8B", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7", "locus": { "chromosome": "9", "start_pos": 39787405, "end_pos": 39790718, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000023599", "url": "https://www.ensembl.org/id/ENSSSCG00000023599" } ] } } ], "crossref": [ { "id": "ENSSSCG00000023599", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000023599", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100516748", "url": "https://www.ncbi.nlm.nih.gov/gene/100516748", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004217", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004217", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100516748", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516748", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "NEICWDK", "url": "https://omabrowser.org/oma/group/NEICWDK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F2Z5V7", "url": "https://www.orthodb.org/?gene=F2Z5V7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF02953", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02953", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003129897", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003129897", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F2Z5V7", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F2Z5V7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRKSGVGTRPLHRRTQIRRKVARLTRKMAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKGGQ", "length": 111, "header": "tr|F2Z5V7-1|F2Z5V7_PIG Isoform 1 of Mitochondrial import inner membrane translocase subunit OS=Sus scrofa OX=9823 GN=TIMM8B PE=1 SV=2 CANONICAL=F2Z5V7-1" }, "isoforms": [ { "isoform_ac": "F2Z5V7-1", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7/entry#F2Z5V7-1", "sequence": { "sequence": "MNRKSGVGTRPLHRRTQIRRKVARLTRKMAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKGGQ", "length": 111, "header": "tr|F2Z5V7-1|F2Z5V7_PIG Isoform 1 of Mitochondrial import inner membrane translocase subunit OS=Sus scrofa OX=9823 GN=TIMM8B PE=1 SV=2 CANONICAL=F2Z5V7-1" }, "locus": { "chromosome": "9", "start_pos": 39790548, "end_pos": 39788395, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023357.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023357.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000026898.2", "url": "https://www.ensembl.org/id/ENSSSCP00000026898.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V7", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100516748", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100516748", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3H2H8-1", "protein_name": "Mitochondrial import inner membrane translocase subunit", "gene_name": "Timm8b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQKGGQ", "length": 83 }, "evidence": [ { "id": "F2Z5V7", "url": "https://omabrowser.org/oma/group/F2Z5V7/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "P57744-1", "protein_name": "Mitochondrial import inner membrane translocase subunit TIM8", "gene_name": "TIM8", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MSSLSTSDLASLDDTSKKEIATFLEGENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNTR", "length": 87 }, "evidence": [ { "id": "F2Z5V7", "url": "https://omabrowser.org/oma/group/F2Z5V7/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P62077-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim8 B", "gene_name": "Timm8b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQKGGQ", "length": 83 }, "evidence": [ { "id": "F2Z5V7", "url": "https://omabrowser.org/oma/group/F2Z5V7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P62078-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim8 B", "gene_name": "Timm8b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAITGRFAQIVQKGGQ", "length": 83 }, "evidence": [ { "id": "F2Z5V7", "url": "https://omabrowser.org/oma/group/F2Z5V7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q3SZ93-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim8 B", "gene_name": "TIMM8B", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQRGGQ", "length": 83 }, "evidence": [ { "id": "F2Z5V7", "url": "https://omabrowser.org/oma/group/F2Z5V7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9XGY4-1", "protein_name": "Mitochondrial import inner membrane translocase subunit TIM8", "gene_name": "TIM8", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDPSMANNPELLQFLAQEKERAMVNEMVSKMTSVCWDKCITSAPGSKFSSSESSCLTHCAQRYMDMSMIIMKRFNSQ", "length": 77 }, "evidence": [ { "id": "F2Z5V7", "url": "https://omabrowser.org/oma/group/F2Z5V7/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9Y1A3-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim8", "gene_name": "Tim8", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSDFENLSGNDKELQEFLLIEKQKAQVNAQIHEFNEICWEKCIGKPSTKLDHATETCLSNCVDRFIDTSLLITQRFAQMLQKRGGGDL", "length": 88 }, "evidence": [ { "id": "F2Z5V7", "url": "https://omabrowser.org/oma/group/F2Z5V7/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Y5J9-1", "protein_name": "Mitochondrial import inner membrane translocase subunit Tim8 B", "gene_name": "TIMM8B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAELGEADEAELQRLVAAEQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIVQKGGQ", "length": 83 }, "evidence": [ { "id": "F2Z5V7", "url": "https://omabrowser.org/oma/group/F2Z5V7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial inner membrane", "id": "GO:0005743", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005743", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V7", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein transport", "id": "GO:0015031", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015031", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V7", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "F2Z5V7", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F2Z5V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F2Z5V7" }, { "id": "PF02953", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02953" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tim10-like", "eco_id": "ECO_0000259", "start_pos": 44, "end_pos": 104, "start_aa": "Val", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PSF6-1", "uniprot_ac": "F6PSF6", "uniprot_id": "F6PSF6_PIG", "mass": { "chemical_mass": 22824.0, "monoisotopic_mass": 22824.0 }, "refseq": { "ac": "XP_020941279", "name": "claudin-9 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941279" }, "gene_names": [ { "name": "CLDN9", "type": "recommended", "evidence": [ { "id": "F6PSF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ] }, { "name": "CLDN9", "type": "synonym", "evidence": [ { "id": "XP_020941279", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941279" } ] } ], "protein_names": [ { "name": "Claudin", "type": "recommended", "evidence": [ { "id": "F6PSF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PSF6/entry#names_and_taxonomy" } ] }, { "name": "claudin-9 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_020941279", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941279" } ] } ], "function": [ { "annotation": "Claudins function as major constituents of the tight junction complexes that regulate the permeability of epithelia.", "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6#function" }, { "database": "UniProtKB", "id": "RU060637", "url": "https://www.uniprot.org/uniprotkb/RU060637#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CLDN9", "url": "https://www.uniprot.org/uniprotkb/F6PSF6", "locus": { "chromosome": "3", "start_pos": 39172853, "end_pos": 39174354, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021536", "url": "https://www.ensembl.org/id/ENSSSCG00000021536" } ] } } ], "crossref": [ { "id": "F6PSF6", "url": "https://alphafold.ebi.ac.uk/entry/F6PSF6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021536", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021536", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100302022", "url": "https://www.ncbi.nlm.nih.gov/gene/100302022", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003553", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003553", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017974", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017974", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "DRYNGAK", "url": "https://omabrowser.org/oma/group/DRYNGAK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F6PSF6", "url": "https://www.orthodb.org/?gene=F6PSF6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020941279", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020941279", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PSF6-1", "url": "https://www.uniprot.org/uniprotkb/F6PSF6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASAGLELLGMSLAVLGWLGTLVCCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVVLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAASALLMLGGGLLCCTCPPPQIDRPRGPRLGYSIPSRSGASGLDKRDYV", "length": 217, "header": "tr|F6PSF6-1|F6PSF6_PIG Isoform 1 of Claudin OS=Sus scrofa OX=9823 GN=CLDN9 PE=3 SV=1 CANONICAL=F6PSF6-1" }, "isoforms": [ { "isoform_ac": "F6PSF6-1", "url": "https://www.uniprot.org/uniprotkb/F6PSF6/entry#F6PSF6-1", "sequence": { "sequence": "MASAGLELLGMSLAVLGWLGTLVCCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVVLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAASALLMLGGGLLCCTCPPPQIDRPRGPRLGYSIPSRSGASGLDKRDYV", "length": 217, "header": "tr|F6PSF6-1|F6PSF6_PIG Isoform 1 of Claudin OS=Sus scrofa OX=9823 GN=CLDN9 PE=3 SV=1 CANONICAL=F6PSF6-1" }, "locus": { "chromosome": "3", "start_pos": 39173954, "end_pos": 39173304, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000008461.3", "url": "https://www.ensembl.org/id/ENSSSCT00000008461.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000008242.2", "url": "https://www.ensembl.org/id/ENSSSCP00000008242.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "G3I025-1", "protein_name": "Claudin", "gene_name": "Cldn9", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVLLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGLLCCTCPPSHFERPRGPRLGYSIPSRSGASGLDKRDYV", "length": 217 }, "evidence": [ { "id": "F6PSF6", "url": "https://omabrowser.org/oma/group/F6PSF6/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O95484-1", "protein_name": "Claudin-9", "gene_name": "CLDN9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVILLLAGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGLLCCTCPPPQVERPRGPRLGYSIPSRSGASGLDKRDYV", "length": 217 }, "evidence": [ { "id": "F6PSF6", "url": "https://omabrowser.org/oma/group/F6PSF6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z0S7-1", "protein_name": "Claudin-9", "gene_name": "Cldn9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASTGLELLGMTLAVLGWLGTLVSCALPLWKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVVALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVLLLLSGILVLIPVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGLLCCTCPPSHFERPRGPRLGYSIPSRSGASGLDKRDYV", "length": 217 }, "evidence": [ { "id": "F6PSF6", "url": "https://omabrowser.org/oma/group/F6PSF6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ], "pmid": "" }, { "name": "bicellular tight junction", "id": "GO:0005923", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005923", "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ], "pmid": "" }, { "name": "bicellular tight junction assembly", "id": "GO:0070830", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070830", "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "structural molecule activity", "id": "GO:0005198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005198", "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ], "pmid": "" }, { "name": "virus receptor activity", "id": "GO:0001618", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001618", "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ], "pmid": "" }, { "name": "cell-cell adhesion mediator activity", "id": "GO:0098632", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098632", "evidence": [ { "database": "UniProtKB", "id": "F6PSF6", "url": "https://www.uniprot.org/uniprotkb/F6PSF6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6PSF6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 217, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6PSF6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6PSF6" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6PSJ3-1", "uniprot_ac": "F6PSJ3", "uniprot_id": "F6PSJ3_PIG", "mass": { "chemical_mass": 14918.0, "monoisotopic_mass": 14918.0 }, "refseq": {}, "gene_names": [ { "name": "APOC2", "type": "recommended", "evidence": [ { "id": "F6PSJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ] } ], "protein_names": [ { "name": "Apolipoprotein C-II", "type": "recommended", "evidence": [ { "id": "F6PSJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3/entry#names_and_taxonomy" } ] }, { "name": "Apo-CII", "type": "synonym", "evidence": [ { "id": "F6PSJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3/entry#names_and_taxonomy" } ] }, { "name": "ApoC-II", "type": "synonym", "evidence": [ { "id": "F6PSJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3/entry#names_and_taxonomy" } ] }, { "name": "Apolipoprotein C2", "type": "synonym", "evidence": [ { "id": "F6PSJ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Component of chylomicrons, very low-density lipoproteins (VLDL), low-density lipoproteins (LDL), and high-density lipoproteins (HDL) in plasma. Plays an important role in lipoprotein metabolism as an activator of lipoprotein lipase.", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3#function" }, { "database": "UniProtKB", "id": "RU368054", "url": "https://www.uniprot.org/uniprotkb/RU368054#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "APOC2", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3", "locus": {} } ], "crossref": [ { "id": "F6PSJ3", "url": "https://alphafold.ebi.ac.uk/entry/F6PSJ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003086", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003086", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR008019", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008019", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR16566", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16566", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16566:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16566:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05355", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05355", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8963888", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8963888", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8963901", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8963901", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-8964058", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964058", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-975634", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975634", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6PSJ3-1", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAYADPHLGQTSTSTLQLPHLQDVPGDTCSRSPDAMGARSFLALFLILLLLASEAQGAHVPPQDEPDSPALLTKVQESLYGYWDTAKATAQDLYRKTYLPTVDEKIRDMYSKSTAAVTIYAGIFTDQVLSLLTGDH", "length": 137, "header": "tr|F6PSJ3-1|F6PSJ3_PIG Isoform 1 of Apolipoprotein C-II OS=Sus scrofa OX=9823 GN=APOC2 PE=1 SV=1 CANONICAL=F6PSJ3-1" }, "isoforms": [ { "isoform_ac": "F6PSJ3-1", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3/entry#F6PSJ3-1", "sequence": { "sequence": "MSAYADPHLGQTSTSTLQLPHLQDVPGDTCSRSPDAMGARSFLALFLILLLLASEAQGAHVPPQDEPDSPALLTKVQESLYGYWDTAKATAQDLYRKTYLPTVDEKIRDMYSKSTAAVTIYAGIFTDQVLSLLTGDH", "length": 137, "header": "tr|F6PSJ3-1|F6PSJ3_PIG Isoform 1 of Apolipoprotein C-II OS=Sus scrofa OX=9823 GN=APOC2 PE=1 SV=1 CANONICAL=F6PSJ3-1" }, "locus": { "chromosome": "6", "start_pos": 51406158, "end_pos": 51404563, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000003424.5", "url": "https://www.ensembl.org/id/ENSSSCT00000003424.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003341.3", "url": "https://www.ensembl.org/id/ENSSSCP00000003341.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8963888", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8963888", "resource": "Reactome", "description": "Chylomicron assembly" }, { "id": "R-SSC-8963901", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8963901", "resource": "Reactome", "description": "Chylomicron remodeling" }, { "id": "R-SSC-8964058", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8964058", "resource": "Reactome", "description": "HDL remodeling" }, { "id": "R-SSC-975634", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-975634", "resource": "Reactome", "description": "Retinoid metabolism and transport" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "lipid transport", "id": "GO:0006869", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006869", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" }, { "name": "lipid catabolic process", "id": "GO:0016042", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016042", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" }, { "name": "high-density lipoprotein particle clearance", "id": "GO:0034384", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034384", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" }, { "name": "chylomicron remnant clearance", "id": "GO:0034382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034382", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" }, { "name": "lipoprotein catabolic process", "id": "GO:0042159", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042159", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "intermediate-density lipoprotein particle", "id": "GO:0034363", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034363", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" }, { "name": "very-low-density lipoprotein particle", "id": "GO:0034361", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034361", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" }, { "name": "spherical high-density lipoprotein particle", "id": "GO:0034366", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034366", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" }, { "name": "chylomicron", "id": "GO:0042627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042627", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" }, { "name": "low-density lipoprotein particle", "id": "GO:0034362", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034362", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "phospholipase activator activity", "id": "GO:0016004", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016004", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" }, { "name": "phospholipase binding", "id": "GO:0043274", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043274", "evidence": [ { "database": "UniProtKB", "id": "F6PSJ3", "url": "https://www.uniprot.org/uniprotkb/F6PSJ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6PSJ3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 137, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6PSJ3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6PSJ3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6Q194-1", "uniprot_ac": "F6Q194", "uniprot_id": "F6Q194_PIG", "mass": { "chemical_mass": 56249.0, "monoisotopic_mass": 56249.0 }, "refseq": {}, "gene_names": [ { "name": "FGL2", "type": "recommended", "evidence": [ { "id": "F6Q194", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q194" } ] } ], "protein_names": [ { "name": "Fibroleukin", "type": "recommended", "evidence": [ { "id": "F6Q194", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q194/entry#names_and_taxonomy" } ] }, { "name": "Fibrinogen-like protein 2", "type": "synonym", "evidence": [ { "id": "F6Q194", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q194/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6Q194", "url": "https://www.uniprot.org/uniprotkb/F6Q194" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "FGL2", "url": "https://www.uniprot.org/uniprotkb/F6Q194", "locus": { "chromosome": "9", "start_pos": 102875576, "end_pos": 102868802, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000015413", "url": "https://www.ensembl.org/id/ENSSSCG00000015413" } ] } } ], "crossref": [ { "id": "ENSSSCG00000015413", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000015413", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00087", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00087", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR002181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014716", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014716", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020837", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020837", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036056", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036056", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "MQRDCAD", "url": "https://omabrowser.org/oma/group/MQRDCAD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR19143", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19143", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19143:SF189", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19143:SF189", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00147", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00147", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6798695", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F6Q194", "url": "https://www.uniprot.org/uniprotkb/F6Q194", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q194-1", "url": "https://www.uniprot.org/uniprotkb/F6Q194-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRTVSFSSAFVNLVMKVLPPFSENRKPDSGRQLLLLKQLEPAASPAGVSATAEMKLKLSNWCWLSSAVLAAYGFLVVANNETEEIKDEAAKDACPVRLESRGKCEEVGGCPYQVNLPPLTLQLPKQFGRIEEVFKEVQNLKEIVNSLKKTCQDCRLQADDNRDPGRNGLLSPGTGAPGEADDSRVRELENEVNKLSSDLKNAKEEIDGLQGRLEKLSLVNMNNIENYVDNKVANLTFAVNSLDGKCSSRCPSQEQIQSRPVQHLIYKDCSEYYTIGKRSSEIYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWRDYKVGFGNLRREFWLGNDKIHLLTKSKDMILRIDLEDFNGIKLYALYDHFYVANEFLKYRLHIGNYNGTAGDALRFSKHYNHDMKYFTTPDRDNDRYPSGNCGLYYSSGWWFDACLSANLNGKYYNQKYRGVRNGIFWGTWPGISEAQPGGYRSSFKEAKMMIRPKYFKP", "length": 495, "header": "tr|F6Q194-1|F6Q194_PIG Isoform 1 of Fibroleukin OS=Sus scrofa OX=9823 GN=FGL2 PE=1 SV=1 CANONICAL=F6Q194-1" }, "isoforms": [ { "isoform_ac": "F6Q194-1", "url": "https://www.uniprot.org/uniprotkb/F6Q194/entry#F6Q194-1", "sequence": { "sequence": "MRTVSFSSAFVNLVMKVLPPFSENRKPDSGRQLLLLKQLEPAASPAGVSATAEMKLKLSNWCWLSSAVLAAYGFLVVANNETEEIKDEAAKDACPVRLESRGKCEEVGGCPYQVNLPPLTLQLPKQFGRIEEVFKEVQNLKEIVNSLKKTCQDCRLQADDNRDPGRNGLLSPGTGAPGEADDSRVRELENEVNKLSSDLKNAKEEIDGLQGRLEKLSLVNMNNIENYVDNKVANLTFAVNSLDGKCSSRCPSQEQIQSRPVQHLIYKDCSEYYTIGKRSSEIYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWRDYKVGFGNLRREFWLGNDKIHLLTKSKDMILRIDLEDFNGIKLYALYDHFYVANEFLKYRLHIGNYNGTAGDALRFSKHYNHDMKYFTTPDRDNDRYPSGNCGLYYSSGWWFDACLSANLNGKYYNQKYRGVRNGIFWGTWPGISEAQPGGYRSSFKEAKMMIRPKYFKP", "length": 495, "header": "tr|F6Q194-1|F6Q194_PIG Isoform 1 of Fibroleukin OS=Sus scrofa OX=9823 GN=FGL2 PE=1 SV=1 CANONICAL=F6Q194-1" }, "locus": { "chromosome": "9", "start_pos": 102872649, "end_pos": 102868909, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000016788.5", "url": "https://www.ensembl.org/id/ENSSSCT00000016788.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000016340.3", "url": "https://www.ensembl.org/id/ENSSSCP00000016340.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F6Q194", "url": "https://www.uniprot.org/uniprotkb/F6Q194" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6798695", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6798695", "resource": "Reactome", "description": "Neutrophil degranulation" } ], "orthologs": [ { "uniprot_canonical_ac": "G3V7P2-1", "protein_name": "Fibrinogen-like 2", "gene_name": "Fgl2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLPGWLWLSSAVLAACRAAEKHNLTEGLEDASAQAACPARLEGSGRCEGSQCPFQLTLPTLTLQLPQQFGSMEEVLKEVRTLQEAVDSLKKSCQDCKLQADEHPDPGGNGAETAEDNRVQELESQVNKLSSELKNAKEEIQGLQGRLESLQLVNMNNIENYVDNKVANLTSVVNSLDSKCFKCPSQEHNQPNPVQHLIYKDCSDYYVLGKRSSGTYRVTPDHRNSSFEVYCDMETTGGGWTVLQARLDGSTNFTRGWKDYKAGFGNLEREFWLGNDKIHLLTKSKEMILRIDLEDFNGLTLYAVYDQFYVANEFLKYRLHLGNYNGTAGDALRFSRHYNHDLRFFTTPDRDNDRYPSGNCGLYYSSGWWFDACLSANLNGKYYHQRYKGVRNGIFWGTWPGVSQAHPGGYKFSFKKAKMMIRPKSFKP", "length": 429 }, "evidence": [ { "id": "F6Q194", "url": "https://omabrowser.org/oma/group/F6Q194/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P12804-1", "protein_name": "Fibroleukin", "gene_name": "Fgl2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRLPGWLWLSSAVLAACRAVEEHNLTEGLEDASAQAACPARLEGSGRCEGSQCPFQLTLPTLTIQLPRQLGSMEEVLKEVRTLKEAVDSLKKSCQDCKLQADDHRDPGGNGGNGAETAEDSRVQELESQVNKLSSELKNAKDQIQGLQGRLETLHLVNMNNIENYVDNKVANLTVVVNSLDGKCSKCPSQEHMQSQPVQHLIYKDCSDHYVLGRRSSGAYRVTPDHRNSSFEVYCDMETMGGGWTVLQARLDGSTNFTREWKDYKAGFGNLEREFWLGNDKIHLLTKSKEMILRIDLEDFNGLTLYALYDQFYVANEFLKYRLHIGNYNGTAGDALRFSRHYNHDLRFFTTPDRDNDRYPSGNCGLYYSSGWWFDSCLSANLNGKYYHQKYKGVRNGIFWGTWPGINQAQPGGYKSSFKQAKMMIRPKNFKP", "length": 432 }, "evidence": [ { "id": "F6Q194", "url": "https://omabrowser.org/oma/group/F6Q194/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q14314-1", "protein_name": "Fibroleukin", "gene_name": "FGL2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKLANWYWLSSAVLATYGFLVVANNETEEIKDERAKDVCPVRLESRGKCEEAGECPYQVSLPPLTIQLPKQFSRIEEVFKEVQNLKEIVNSLKKSCQDCKLQADDNGDPGRNGLLLPSTGAPGEVGDNRVRELESEVNKLSSELKNAKEEINVLHGRLEKLNLVNMNNIENYVDSKVANLTFVVNSLDGKCSKCPSQEQIQSRPVQHLIYKDCSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWQDYKAGFGNLRREFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAGDALRFNKHYNHDLKFFTTPDKDNDRYPSGNCGLYYSSGWWFDACLSANLNGKYYHQKYRGVRNGIFWGTWPGVSEAHPGGYKSSFKEAKMMIRPKHFKP", "length": 439 }, "evidence": [ { "id": "F6Q194", "url": "https://omabrowser.org/oma/group/F6Q194/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q29RY7-1", "protein_name": "Fibroleukin", "gene_name": "FGL2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKLANWCWLSSTVLATYGFLVVANNETEEIKDEAAQNACRVRLESRGRCEEEGECPYQVNLPPLTIQLPKQFSRIEEVFKEVQNLKEIVNSLKKTCQDCKLQADDSRDPGRNGLLLPGTGAPGETGDNRVRELEGEVNKLSSDLKNAKEEIDVLQGRLEKLNLVNMNNIEQYVDSKVANLTFVVNSLDGKCSSKCPRQEQIQSLPVQQHLIYKDCSEYYTIGKRSSELYRVTPEPRNSSFEVFCDMETMAGGWTVLQARVDGSTNFTRTWQDYKVGFGNLRREFWLGNDKIHLLTKSKDMILRIDLEDFNGIKLYALYDHFYVANEFLKYRLHIGNYNGTAGDALRFSKHYNHDLKFFTTPDRDNDRYPSGNCGLYYSSGWWFDACLSANLNGKYYHQKYRGVRNGIFWGTWPGISEAQPGGYKSSFKEVKMMIRPKHFKP", "length": 441 }, "evidence": [ { "id": "F6Q194", "url": "https://omabrowser.org/oma/group/F6Q194/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "F6Q194", "url": "https://www.uniprot.org/uniprotkb/F6Q194" } ], "pmid": "" }, { "name": "extracellular matrix", "id": "GO:0031012", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031012", "evidence": [ { "database": "UniProtKB", "id": "F6Q194", "url": "https://www.uniprot.org/uniprotkb/F6Q194" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 291, "end_pos": 293, "annotation": "n_glycosylation_sequon" }, { "start_pos": 319, "end_pos": 321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 392, "end_pos": 394, "annotation": "n_glycosylation_sequon" }, { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F6Q194", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q194" }, { "id": "PS51406", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51406" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrinogen C-terminal", "eco_id": "ECO_0000259", "start_pos": 260, "end_pos": 492, "start_aa": "Pro", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 234, "end_pos": 236 }, { "start_pos": 291, "end_pos": 293 }, { "start_pos": 319, "end_pos": 321 }, { "start_pos": 392, "end_pos": 394 }, { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6Q553-1", "uniprot_ac": "F6Q553", "uniprot_id": "F6Q553_PIG", "mass": { "chemical_mass": 69355.0, "monoisotopic_mass": 69355.0 }, "refseq": {}, "gene_names": [ { "name": "SOCS7", "type": "recommended", "evidence": [ { "id": "F6Q553", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ] } ], "protein_names": [ { "name": "Suppressor of cytokine signaling 7", "type": "recommended", "evidence": [ { "id": "F6Q553", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q553/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Substrate-recognition component of a cullin-5-RING E3 ubiquitin-protein ligase complex (ECS complex, also named CRL5 complex), which mediates the ubiquitination and subsequent proteasomal degradation of target proteins, such as DAB1 and IRS1. Specifically recognizes and binds phosphorylated proteins via its SH2 domain, promoting their ubiquitination. The ECS(SOCS7) complex acts as a key regulator of reelin signaling by mediating ubiquitination and degradation of phosphorylated DAB1 in the cortical plate of the developing cerebral cortex, thereby regulating neuron positioning during cortex development. Functions in insulin signaling and glucose homeostasis through IRS1 ubiquitination and subsequent proteasomal degradation. Also inhibits prolactin, growth hormone and leptin signaling by preventing STAT3 and STAT5 activation, sequestering them in the cytoplasm and reducing their binding to DNA.", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553#function" }, { "database": "UniProtKB", "id": "ARBA00059017", "url": "https://www.uniprot.org/uniprotkb/ARBA00059017#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SOCS7", "url": "https://www.uniprot.org/uniprotkb/F6Q553", "locus": { "chromosome": "12", "start_pos": 23688722, "end_pos": 23723363, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000018057", "url": "https://www.ensembl.org/id/ENSSSCG00000018057" } ] } } ], "crossref": [ { "id": "F6Q553", "url": "https://alphafold.ebi.ac.uk/entry/F6Q553", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000018057", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000018057", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03741", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03741", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10388", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10388", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035866", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035866", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037346", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037346", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "SHTHIHH", "url": "https://omabrowser.org/oma/group/SHTHIHH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR10155", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10155", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10155:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10155:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q553-1", "url": "https://www.uniprot.org/uniprotkb/F6Q553-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQGAELRDGEAAAAAASYRVLSRLLGYGEAAPEPGPPPPPPGHGPAPPPFLARPGPRGSRPPQLMVFRNVGRPPEEEDAEAAPDPGPSELLCPRHRCALDPKALPPGLALERTWGPAAGLEAQLAALGLGQSAGPGVKTVSGGCCPCPCPPQPPPPQPQPPAAAPQAGEDPTETSDALLVLEGLESEAESLETNSCSEEELSSPGRGGGGGGRLLLQPPGPELPPVPFPMQDLVLPGRLSRGEQQQQQQQPPPPPPPPGPLRPLAGPSRKGSLKIRLSRLFRTKSCNGGSGGGDGAGKRPSGELAASAGSLTDMGGSAGRELDTGRKPRLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAPDAFPRIAPTRAAESLHSQPPQHLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEIKLKGKPDGSFLVRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRSRVPGLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPDLPLPKPLISYIRKFYYYDPQEEVYLSLKEAQLISKQKQEVLEPST", "length": 645, "header": "tr|F6Q553-1|F6Q553_PIG Isoform 1 of Suppressor of cytokine signaling 7 OS=Sus scrofa OX=9823 GN=SOCS7 PE=4 SV=1 CANONICAL=F6Q553-1" }, "isoforms": [ { "isoform_ac": "F6Q553-1", "url": "https://www.uniprot.org/uniprotkb/F6Q553/entry#F6Q553-1", "sequence": { "sequence": "MQGAELRDGEAAAAAASYRVLSRLLGYGEAAPEPGPPPPPPGHGPAPPPFLARPGPRGSRPPQLMVFRNVGRPPEEEDAEAAPDPGPSELLCPRHRCALDPKALPPGLALERTWGPAAGLEAQLAALGLGQSAGPGVKTVSGGCCPCPCPPQPPPPQPQPPAAAPQAGEDPTETSDALLVLEGLESEAESLETNSCSEEELSSPGRGGGGGGRLLLQPPGPELPPVPFPMQDLVLPGRLSRGEQQQQQQQPPPPPPPPGPLRPLAGPSRKGSLKIRLSRLFRTKSCNGGSGGGDGAGKRPSGELAASAGSLTDMGGSAGRELDTGRKPRLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAPDAFPRIAPTRAAESLHSQPPQHLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEIKLKGKPDGSFLVRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRSRVPGLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPDLPLPKPLISYIRKFYYYDPQEEVYLSLKEAQLISKQKQEVLEPST", "length": 645, "header": "tr|F6Q553-1|F6Q553_PIG Isoform 1 of Suppressor of cytokine signaling 7 OS=Sus scrofa OX=9823 GN=SOCS7 PE=4 SV=1 CANONICAL=F6Q553-1" }, "locus": { "chromosome": "12", "start_pos": 23723237, "end_pos": 23696831, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019652.5", "url": "https://www.ensembl.org/id/ENSSSCT00000019652.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019132.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019132.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 370, "start_aa": "Thr", "end_pos": 370, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr370", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 564, "start_aa": "Thr", "end_pos": 564, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr564", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K9S1-1", "protein_name": "Suppressor of cytokine signaling 7", "gene_name": "Socs7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MQGAELRDGEAAAAAASYRVLSRLLGYGEAAPEPGPPPPPPGHGPPPPPFLARPGSRGARPPQLMVFRNVGRPPEEEDAEAAPEPGPSELLCPRHRCALDPKALPPGLALERTWGPVAGLEAQLAALGLGQPAGPGIKTAGGGCCPCPCPPQPPPPQPPPPAAAPQAGEDPTETSDALLVLEGLESEAESLETNSCSEEELSSPGRGGGVGGRLLLQPPGPELPPVPFPLQDLVPPGRLSRGEQQQQQPPPPPPPPGPLRPLAGPSRKGSFKIRLSRLFRTKSCNGGSGGGDGTGKRPSGDLAASAASLTDMGGSAVRELDAGRKPRLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAPDAFPRIAPIRASESLHSQPPQHLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEMKLKGKPDGSFLVRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRSRVPGLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPDLPLPKPLISYIRKFYYYDPQEEVYLSLKEAQLISKQKQEVEPST", "length": 642 }, "evidence": [ { "id": "F6Q553", "url": "https://omabrowser.org/oma/group/F6Q553/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0ZQS3-1", "protein_name": "Suppressor of cytokine signaling 7", "gene_name": "SOCS7", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MQRAELRDGEAAAAASYRVLSRLLGYGAGPEAGAAGGPGSGAAVAGPPGPGGARLPLPVPAPGGAPRPPPQLMVFRNAAEGRPGEEEAAAGGGEGPAGGPELLCPRHRCALEPKAAAGGGWGPPGGLELQLAALGLRPPALGAKGPAACPCLGPPAAEETSDALLVLEALEPDEAESCSEEEPGSPGPADPQEPPRGAAAAAARRAVPGPGAAGGRKGSLRVRLSRLFRTKSCSGGSAPGDGGGGSRRGAELTASAHSLSDGGGARGRGQEEGRKHRLTRTQSAFSPVVFSPLFTGETVSLVDVDISQRGLSSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVGPMGSSLQSFPLPPPPPPHAPDAFPRVVPLRPTEPAPIQPAPHLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEMKLKGKPDGSFLVRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRSRVPGLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPELPLPKPLISYIRKFYYYDPQEEVYLSLKEAQLISRQKQDAESST", "length": 592 }, "evidence": [ { "id": "F6Q553", "url": "https://omabrowser.org/oma/group/F6Q553/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BIS1-1", "protein_name": "Suppressor of cytokine signaling 7", "gene_name": "SOCS7", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MQGAELRDGEAAAAAASYRVLSRLLGYGEAAPEPGPPPPPPGHGPAPPPFLARPGPRGSRPPQLMVFRNVGRPPEEEDAEAAQEPGPSELLCPRHRCALDPKALPPGLALERTWGPAAGLEAQLAALGLGQPAGPGVKTVGGGCCPCPCPPQPPPPQPQPPAAAPQAGEDPTETSDALLVLEGLESEAESLETNSCSEEELSSPGRGGGGGGRLLLQTPGPELPPVPFPMQDLVPPGRLSRGEQPQQPPPPPPPPGPLRPLAGLSRKGSLKIRLSRLFRTKSCNGGSGGGDGAGKRPSGELVASAASLTDMGGSAGRELDAGRKPRLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAPDAFPRIAPIRAAESLHSQPPQHLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEMKLKGKPDGSFLVRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRSRVPGLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPDLPLPKPLISYIRKFYYYDPQEEVYLSLKEAQLISKQKQEVLEPST", "length": 642 }, "evidence": [ { "id": "F6Q553", "url": "https://omabrowser.org/oma/group/F6Q553/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O14512-1", "protein_name": "Suppressor of cytokine signaling 7", "gene_name": "SOCS7", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MVFRNVGRPPEEEDVEAAPEPGPSELLCPRHRCALDPKALPPGLALERTWGPAAGLEAQLAALGLGQPAGPGVKTVGGGCCPCPCPPQPPPPQPQPPAAAPQAGEDPTETSDALLVLEGLESEAESLETNSCSEEELSSPGRGGGGGGRLLLQPPGPELPPVPFPLQDLVPLGRLSRGEQQQQQQQQPPPPPPPPGPLRPLAGPSRKGSFKIRLSRLFRTKSCNGGSGGGDGTGKRPSGELAASAASLTDMGGSAGRELDAGRKPKLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAPDAFPRIAPIRAAESLHSQPPQHLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEMKLKGKPDGSFLVRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRSRVPGLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPDLPLPKPLISYIRKFYYYDPQEEVYLSLKEAQLISKQKQEVEPST", "length": 581 }, "evidence": [ { "id": "F6Q553", "url": "https://omabrowser.org/oma/group/F6Q553/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VHQ2-1", "protein_name": "Suppressor of cytokine signaling 7", "gene_name": "Socs7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVFRNVGRPPEEEDAEAAREPGPSELLCPRHRCALDPKALPPGLALERTWGPVAGLEAQLAALGLGQPAGPGIKTAGGGCCPCPCPPQPPPPQPPPPAAAPQAGEDPTETSDALLVLEGLESEAESLETNSCSEEELSSPGRGGGGVGGRLLLQPPGPELPPVPFPLQDLVPPGRLSRGEQQQQQPPPPPPPPGPLRPLAGPSRKGSFKIRLSRLFRTKSCNGGSGGGDGTGKRPSGDLAASAASLTDMGGSAVRELDTGRKPRLTRTQSAFSPVSFSPLFTGETVSLVDVDISQRGLTSPHPPTPPPPPRRSLSLLDDISGTLPTSVLVAPMGSSLQSFPLPPPPPPHAPDAFPRIAPIRASESLHSQPPQHLQCPLYRPDSSSFAASLRELEKCGWYWGPMNWEDAEMKLKGKPDGSFLVRDSSDPRYILSLSFRSQGITHHTRMEHYRGTFSLWCHPKFEDRCQSVVEFIKRAIMHSKNGKFLYFLRSRVPGLPPTPVQLLYPVSRFSNVKSLQHLCRFRIRQLVRIDHIPDLPLPKPLISYIRKFYYYDPQEEVYLSLKEAQLISKQKQEVEPST", "length": 579 }, "evidence": [ { "id": "F6Q553", "url": "https://omabrowser.org/oma/group/F6Q553/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "pmid": "" }, { "name": "insulin receptor signaling pathway", "id": "GO:0008286", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008286", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "pmid": "" }, { "name": "negative regulation of signal transduction", "id": "GO:0009968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009968", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "signaling adaptor activity", "id": "GO:0035591", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035591", "evidence": [ { "database": "UniProtKB", "id": "F6Q553", "url": "https://www.uniprot.org/uniprotkb/F6Q553" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6Q553-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 645, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6Q553-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6Q553" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F6Q553", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q553" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 463, "end_pos": 572, "start_aa": "Trp", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "F6Q553", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q553" }, { "id": "PS50225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOCS box", "eco_id": "ECO_0000259", "start_pos": 567, "end_pos": 617, "start_aa": "Gln", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 370, 564 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6Q635-1", "uniprot_ac": "F6Q635", "uniprot_id": "F6Q635_PIG", "mass": { "chemical_mass": 26734.0, "monoisotopic_mass": 26734.0 }, "refseq": {}, "gene_names": [ { "name": "MPDU1", "type": "recommended", "evidence": [ { "id": "F6Q635", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q635" } ] } ], "protein_names": [ { "name": "Mannose-P-dolichol utilization defect 1 protein", "type": "recommended", "evidence": [ { "id": "F6Q635", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q635/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Required for normal utilization of mannose-dolichol phosphate (Dol-P-Man) in the synthesis of N-linked and O-linked oligosaccharides and GPI anchors.", "evidence": [ { "database": "UniProtKB", "id": "F6Q635", "url": "https://www.uniprot.org/uniprotkb/F6Q635#function" }, { "database": "UniProtKB", "id": "PIRNR023381", "url": "https://www.uniprot.org/uniprotkb/PIRNR023381#function" }, { "database": "UniProtKB", "id": "ARBA00054724", "url": "https://www.uniprot.org/uniprotkb/ARBA00054724#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6Q635", "url": "https://www.uniprot.org/uniprotkb/F6Q635" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "MPDU1", "url": "https://www.uniprot.org/uniprotkb/F6Q635", "locus": { "chromosome": "12", "start_pos": 52882863, "end_pos": 52878764, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000017955", "url": "https://www.ensembl.org/id/ENSSSCG00000017955" } ] } } ], "crossref": [ { "id": "ENSSSCG00000017955", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000017955", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR006603", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006603", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016817", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016817", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "LQVLYYW", "url": "https://omabrowser.org/oma/group/LQVLYYW/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR12226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12226:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12226:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04193", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04193", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-446193", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446193", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "F6Q635", "url": "https://www.uniprot.org/uniprotkb/F6Q635", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q635-1", "url": "https://www.uniprot.org/uniprotkb/F6Q635-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLVLHYRGQTVRGVAFLACHAVLLLMLLSPLTPLALVTLLQASNVPAVVVGRLIQAATNYRNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNAKPPHKKKKEH", "length": 247, "header": "tr|F6Q635-1|F6Q635_PIG Isoform 1 of Mannose-P-dolichol utilization defect 1 protein OS=Sus scrofa OX=9823 GN=MPDU1 PE=1 SV=1 CANONICAL=F6Q635-1" }, "isoforms": [ { "isoform_ac": "F6Q635-1", "url": "https://www.uniprot.org/uniprotkb/F6Q635/entry#F6Q635-1", "sequence": { "sequence": "MAAEVDGPLKRVLVPILLPEKCYDQIFVQWDLLHVPCLKILLSKCLGLGIVAGSLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTVTIAFLVLHYRGQTVRGVAFLACHAVLLLMLLSPLTPLALVTLLQASNVPAVVVGRLIQAATNYRNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLLAGTFVVSSLCNGLIAAQLLFYWNAKPPHKKKKEH", "length": 247, "header": "tr|F6Q635-1|F6Q635_PIG Isoform 1 of Mannose-P-dolichol utilization defect 1 protein OS=Sus scrofa OX=9823 GN=MPDU1 PE=1 SV=1 CANONICAL=F6Q635-1" }, "locus": { "chromosome": "12", "start_pos": 52882292, "end_pos": 52878935, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000019539.3", "url": "https://www.ensembl.org/id/ENSSSCT00000019539.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019021.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019021.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F6Q635", "url": "https://www.uniprot.org/uniprotkb/F6Q635" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-446193", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-446193", "resource": "Reactome", "description": "Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein" } ], "orthologs": [ { "uniprot_canonical_ac": "B0G0Z6-1", "protein_name": "Mannose-P-dolichol utilization defect 1 protein homolog", "gene_name": "mpdu1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MESVIGQVNQVIKTTLGPEWDLSLLISKALGYGIIAGSLLLKVPQILKVASSKSAESLSASSIAMENIGFTISLLAGYKLLNPFSTYGESAFILVQNFFLLILVLKYTQKLNAVFFTGLALYAGAVFAALNYVDNDGFNLLLKLNIPLFIISKFPQIITIIKNKSVGQLSFITCFLNLAGSLARVFTTIKEVNNPVILLSYGIGSFLNSIILILFFVYGTKKVPARKQVGTKKTN", "length": 235 }, "evidence": [ { "id": "F6Q635", "url": "https://omabrowser.org/oma/group/F6Q635/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "O75352-1", "protein_name": "Mannose-P-dolichol utilization defect 1 protein", "gene_name": "MPDU1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAEADGPLKRLLVPILLPEKCYDQLFVQWDLLHVPCLKILLSKGLGLGIVAGSLLVKLPQVFKILGAKSAEGLSLQSVMLELVALTGTMVYSITNNFPFSSWGEALFLMLQTITICFLVMHYRGQTVKGVAFLACYGLVLLVLLSPLTPLTVVTLLQASNVPAVVVGRLLQAATNYHNGHTGQLSAITVFLLFGGSLARIFTSIQETGDPLMAGTFVVSSLCNGLIAAQLLFYWNAKPPHKQKKAQ", "length": 247 }, "evidence": [ { "id": "F6Q635", "url": "https://omabrowser.org/oma/group/F6Q635/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8VY63-1", "protein_name": "Mannose-P-dolichol utilization defect 1 protein homolog 2", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDYLGIDMSCAIGSLRNGDFPEKDCLLPLISKLLGYCLVAASITVKLPQIMKIVQHKSVRGLSVVAFELEVVGYTISLAYCLHKGLPFSAFGEMAFLLIQALILVACIYYYSQPVPVTTWIRPLLYCAVAPTVLAGQINPTLFEALYASQHAIFLFARLPQIWKNFKNKSTGELSFLTFFMNFAGSIVRVFTSLQEKAPISILTGFALGVVTNGSILTQILLYSKPAAAKEKKAN", "length": 235 }, "evidence": [ { "id": "F6Q635", "url": "https://omabrowser.org/oma/group/F6Q635/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "Q9VMW8-1", "protein_name": "Mannose-P-dolichol utilization defect 1 protein homolog", "gene_name": "", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTDLIRQGALFLMSEKCYDNYFLYHNFLDVPCFKALLSKGLGLAIIAGSVLVKVPQVLKILNSKSGEGINIVGVVLDLLAISFHLSYNFMHGYPFSAWGDSTFLAIQTVTIAVLVLFFNGRKAQSGLFLVGYVVLMYVLNSGLTPMSVLFTIQSCNIPILLVGKLSQAYTNYQAGSTGQLSAATVIMMFAGSVARIFTSIQETGDFMIILTFIASTFANSVILGQLIYYWNKPAGVKVKDSKAKKPKTKKDD", "length": 252 }, "evidence": [ { "id": "F6Q635", "url": "https://omabrowser.org/oma/group/F6Q635/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "F6Q635", "url": "https://www.uniprot.org/uniprotkb/F6Q635" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "dolichol-linked oligosaccharide biosynthetic process", "id": "GO:0006488", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006488", "evidence": [ { "database": "UniProtKB", "id": "F6Q635", "url": "https://www.uniprot.org/uniprotkb/F6Q635" } ], "pmid": "" }, { "name": "oligosaccharide biosynthetic process", "id": "GO:0009312", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009312", "evidence": [ { "database": "UniProtKB", "id": "F6Q635", "url": "https://www.uniprot.org/uniprotkb/F6Q635" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6Q8K1-1", "uniprot_ac": "F6Q8K1", "uniprot_id": "F6Q8K1_PIG", "mass": { "chemical_mass": 29672.0, "monoisotopic_mass": 29672.0 }, "refseq": {}, "gene_names": [ { "name": "UPK1B", "type": "recommended", "evidence": [ { "id": "F6Q8K1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1" } ] } ], "protein_names": [ { "name": "Uroplakin-1b", "type": "recommended", "evidence": [ { "id": "F6Q8K1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1/entry#names_and_taxonomy" } ] }, { "name": "Uroplakin Ib", "type": "synonym", "evidence": [ { "id": "F6Q8K1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6Q8K1", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UPK1B", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1", "locus": { "chromosome": "13", "start_pos": 141013103, "end_pos": 141038902, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000011904", "url": "https://www.ensembl.org/id/ENSSSCG00000011904" } ] } } ], "crossref": [ { "id": "F6Q8K1", "url": "https://alphafold.ebi.ac.uk/entry/F6Q8K1", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000011904", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000011904", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03156", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03156", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR008952", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008952", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "EKCCGVN", "url": "https://omabrowser.org/oma/group/EKCCGVN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR47110", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47110", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47110:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47110:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00335", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00335", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F6Q8K1", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6Q8K1-1", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKDDSTVRCFQSLLVFGNVIIGMCGIALTAECIFFVSDQYSLYPLLEATDNDDIYGAAWIGIFVGICLFCLSVLGIVGIMKSNRKILLVYFILMFIVYGFEVASCITAATQRDFFTPNLFLKQMLERYQNNSPPSNDDKWKNNGVTKTWDRLMLQDYCCGVNGPSDWQKYTSAFRTENNDADPWPRQCCVMNKLKEPLNLEACKLGVPGYYHNQGCYELISGPMNRHAWGVAWFGFAILCWTFWVLLGTMFYWSRIEY", "length": 259, "header": "tr|F6Q8K1-1|F6Q8K1_PIG Isoform 1 of Uroplakin-1b OS=Sus scrofa OX=9823 GN=UPK1B PE=3 SV=1 CANONICAL=F6Q8K1-1" }, "isoforms": [ { "isoform_ac": "F6Q8K1-1", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1/entry#F6Q8K1-1", "sequence": { "sequence": "MAKDDSTVRCFQSLLVFGNVIIGMCGIALTAECIFFVSDQYSLYPLLEATDNDDIYGAAWIGIFVGICLFCLSVLGIVGIMKSNRKILLVYFILMFIVYGFEVASCITAATQRDFFTPNLFLKQMLERYQNNSPPSNDDKWKNNGVTKTWDRLMLQDYCCGVNGPSDWQKYTSAFRTENNDADPWPRQCCVMNKLKEPLNLEACKLGVPGYYHNQGCYELISGPMNRHAWGVAWFGFAILCWTFWVLLGTMFYWSRIEY", "length": 259, "header": "tr|F6Q8K1-1|F6Q8K1_PIG Isoform 1 of Uroplakin-1b OS=Sus scrofa OX=9823 GN=UPK1B PE=3 SV=1 CANONICAL=F6Q8K1-1" }, "locus": { "chromosome": "13", "start_pos": 141026368, "end_pos": 141013956, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000013027.5", "url": "https://www.ensembl.org/id/ENSSSCT00000013027.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000012685.3", "url": "https://www.ensembl.org/id/ENSSSCP00000012685.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F6Q8K1", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8C2MSW7-1", "protein_name": "Uroplakin-1b", "gene_name": "Upk1b", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MAKDDSTVRCFQGLLIFGHVIVGMCGIALTAECIFFVSDQHSLYPLLEATNNDDIYGAAWIGMFVGICLFCLSVLAIVGILKSNRKILLAYFIMMFIVYGFEVASCITAATQRDFFTANLFLKQMLVRYQNNSPPTNDDEWKNNGVTKTWDRLMLQEHCCGVNGPSDWQKYTSAFRVENNDADYPWPRQCCVMNKLKEPLNLDACKLGVPGYYHNQGCYELISAPMDRHAWGVAWFGFAILCWTFWVLLGTMFYWSRIEY", "length": 260 }, "evidence": [ { "id": "F6Q8K1", "url": "https://omabrowser.org/oma/group/F6Q8K1/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "O75841-1", "protein_name": "Uroplakin-1b", "gene_name": "UPK1B", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAKDNSTVRCFQGLLIFGNVIIGCCGIALTAECIFFVSDQHSLYPLLEATDNDDIYGAAWIGIFVGICLFCLSVLGIVGIMKSSRKILLAYFILMFIVYAFEVASCITAATQQDFFTPNLFLKQMLERYQNNSPPNNDDQWKNNGVTKTWDRLMLQDNCCGVNGPSDWQKYTSAFRTENNDADYPWPRQCCVMNNLKEPLNLEACKLGVPGFYHNQGCYELISGPMNRHAWGVAWFGFAILCWTFWVLLGTMFYWSRIEY", "length": 260 }, "evidence": [ { "id": "F6Q8K1", "url": "https://omabrowser.org/oma/group/F6Q8K1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q566D0-1", "protein_name": "Uroplakin-1b", "gene_name": "Upk1b", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAKDDSTVRCFQGLLIFGHVIVGMCGIALTAECIFFVSDQHSLYPLLEATNNDDIFGAAWIGMFVGICLFCLSVLAIVGIMKSNRKILLAYFIMMFIVYGFEVASCITAATQRDFFTTNLFLKQMLMRYQNNSPPTNDDKWKNSYVTKTWDRLMLQDHCCGVNGPSDWQKYTSAFRVENSDADYPWPRQCCVMDKLQEPLNLDACKLGVPGYYHSQGCYELISGPMDRHAWGVAWFGFAILCWTFWVLLGTMFYWSRIEY", "length": 260 }, "evidence": [ { "id": "F6Q8K1", "url": "https://omabrowser.org/oma/group/F6Q8K1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9Z2C6-1", "protein_name": "Uroplakin-1b", "gene_name": "Upk1b", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAKDDSTVRCFQGLLIFGHVIVGMCGIALTAECIFFVSDQHSLYPLLEATNNDDIFGAAWIGMFVGICLFCLSVLAIVGIMKSNRKILLAYFIMMFIVYGFEVASCITAATQRDFFTTNLFLKQMLMRYQNNSPPTNDDEWKNNGVTKTWDRLMLQDHCCGVNGPSDWQKYTSAFRVENNDADYPWPRQCCVMDKLKEPLNLDACKLGVPGYYHSQGCYELISGPMDRHAWGVAWFGFAILCWTFWVLLGTMFYWSRIEY", "length": 260 }, "evidence": [ { "id": "F6Q8K1", "url": "https://omabrowser.org/oma/group/F6Q8K1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "apical plasma membrane urothelial plaque", "id": "GO:0120001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120001", "evidence": [ { "database": "UniProtKB", "id": "F6Q8K1", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "F6Q8K1", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "epithelial cell differentiation", "id": "GO:0030855", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030855", "evidence": [ { "database": "UniProtKB", "id": "F6Q8K1", "url": "https://www.uniprot.org/uniprotkb/F6Q8K1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6Q8K1-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 259, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6Q8K1-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6Q8K1" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 131, "end_pos": 133 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F6QAR4-1", "uniprot_ac": "F6QAR4", "uniprot_id": "F6QAR4_PIG", "mass": { "chemical_mass": 25821.0, "monoisotopic_mass": 25821.0 }, "refseq": {}, "gene_names": [ { "name": "AKIRIN1", "type": "recommended", "evidence": [ { "id": "F6QAR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ] } ], "protein_names": [ { "name": "Akirin 1", "type": "synonym", "evidence": [ { "id": "F6QAR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F6QAR4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "AKIRIN1", "url": "https://www.uniprot.org/uniprotkb/F6QAR4", "locus": { "chromosome": "6", "start_pos": 94905662, "end_pos": 94891363, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000003652", "url": "https://www.ensembl.org/id/ENSSSCG00000003652" } ] } } ], "crossref": [ { "id": "F6QAR4", "url": "https://alphafold.ebi.ac.uk/entry/F6QAR4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000003652", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000003652", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR024132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR13293", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13293", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13293:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13293:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F6QAR4-1", "url": "https://www.uniprot.org/uniprotkb/F6QAR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "RHWSRLGLQAPLRSRRLGRSYSRVRSRFLVPPRHGVRGDVEAAHGVRSGAAEPRLPEASALRPSPRPHSGPQAPDAEPPPPLLQTQTPLPTLQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEACTSESQPHSSALTAPSSPGSSWMKKDQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS", "length": 226, "header": "tr|F6QAR4-1|F6QAR4_PIG Isoform 1 of Akirin 1 OS=Sus scrofa OX=9823 GN=AKIRIN1 PE=3 SV=2 CANONICAL=F6QAR4-1" }, "isoforms": [ { "isoform_ac": "F6QAR4-1", "url": "https://www.uniprot.org/uniprotkb/F6QAR4/entry#F6QAR4-1", "sequence": { "sequence": "RHWSRLGLQAPLRSRRLGRSYSRVRSRFLVPPRHGVRGDVEAAHGVRSGAAEPRLPEASALRPSPRPHSGPQAPDAEPPPPLLQTQTPLPTLQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEACTSESQPHSSALTAPSSPGSSWMKKDQPTFTLRQVGIICERLLKDYEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS", "length": 226, "header": "tr|F6QAR4-1|F6QAR4_PIG Isoform 1 of Akirin 1 OS=Sus scrofa OX=9823 GN=AKIRIN1 PE=3 SV=2 CANONICAL=F6QAR4-1" }, "locus": { "chromosome": "6", "start_pos": 94902460, "end_pos": 94891364, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000004048.5", "url": "https://www.ensembl.org/id/ENSSSCT00000004048.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000003957.4", "url": "https://www.ensembl.org/id/ENSSSCP00000003957.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" }, { "name": "myoblast migration involved in skeletal muscle regeneration", "id": "GO:0014839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014839", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" }, { "name": "positive regulation of lamellipodium assembly", "id": "GO:0010592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010592", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" }, { "name": "positive regulation of myoblast differentiation", "id": "GO:0045663", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045663", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" }, { "name": "positive regulation of macrophage chemotaxis", "id": "GO:0010759", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010759", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" }, { "name": "negative regulation of skeletal muscle satellite cell proliferation", "id": "GO:1902723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902723", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" }, { "name": "negative regulation of satellite cell differentiation", "id": "GO:1902725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902725", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "F6QAR4", "url": "https://www.uniprot.org/uniprotkb/F6QAR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-F6QAR4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 226, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-F6QAR4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/F6QAR4" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F8R6K7-1", "uniprot_ac": "F8R6K7", "uniprot_id": "F8R6K7_PIG", "mass": { "chemical_mass": 13910.0, "monoisotopic_mass": 13910.0 }, "refseq": { "ac": "XP_020943352", "name": "urocortin", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943352" }, "gene_names": [ { "name": "UCN", "type": "recommended", "evidence": [ { "id": "F8R6K7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ] }, { "name": "UCN", "type": "synonym", "evidence": [ { "id": "XP_020943352", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943352" } ] } ], "protein_names": [ { "name": "Urocortin", "type": "synonym", "evidence": [ { "id": "F8R6K7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F8R6K7/entry#names_and_taxonomy" } ] }, { "name": "urocortin", "type": "synonym", "evidence": [ { "id": "XP_020943352", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943352" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "UCN", "url": "https://www.uniprot.org/uniprotkb/F8R6K7", "locus": { "chromosome": "3", "start_pos": 111835508, "end_pos": 111835125, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000063152", "url": "https://www.ensembl.org/id/ENSSSCG00000063152" } ] } } ], "crossref": [ { "id": "ENSSSCG00000037201", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000037201", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "110260045", "url": "https://www.ncbi.nlm.nih.gov/gene/110260045", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018446", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018446", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:110260045", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260045", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QNRIVFD", "url": "https://omabrowser.org/oma/group/QNRIVFD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "F8R6K7", "url": "https://www.orthodb.org/?gene=F8R6K7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15035", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15035", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15035:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15035:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00473", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00473", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-373080", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373080", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020943352", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020943352", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F8R6K7-1", "url": "https://www.uniprot.org/uniprotkb/F8R6K7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRPAGLAALLAALLLLAQLRPGSSQWSPEAAVAGVQDPSLRWSPRTQKHGGSGARALLLLLAERFPRRAGQGRWGSGAASERPRRDDPPLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK", "length": 127, "header": "tr|F8R6K7-1|F8R6K7_PIG Isoform 1 of Urocortin OS=Sus scrofa OX=9823 GN=UCN PE=3 SV=1 CANONICAL=F8R6K7-1" }, "isoforms": [ { "isoform_ac": "F8R6K7-1", "url": "https://www.uniprot.org/uniprotkb/F8R6K7/entry#F8R6K7-1", "sequence": { "sequence": "MRPAGLAALLAALLLLAQLRPGSSQWSPEAAVAGVQDPSLRWSPRTQKHGGSGARALLLLLAERFPRRAGQGRWGSGAASERPRRDDPPLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK", "length": 127, "header": "tr|F8R6K7-1|F8R6K7_PIG Isoform 1 of Urocortin OS=Sus scrofa OX=9823 GN=UCN PE=3 SV=1 CANONICAL=F8R6K7-1" }, "locus": { "chromosome": "3", "start_pos": 111835505, "end_pos": 111835125, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000071655.2", "url": "https://www.ensembl.org/id/ENSSSCT00000071655.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000064569.2", "url": "https://www.ensembl.org/id/ENSSSCP00000064569.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:110260045", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:110260045", "resource": "KEGG Pathway" }, { "id": "R-SSC-373080", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-373080", "resource": "Reactome", "description": "Class B/2 (Secretin family receptors)" } ], "orthologs": [ { "uniprot_canonical_ac": "P55089-1", "protein_name": "Urocortin", "gene_name": "UCN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRQAGRAALLAALLLLVQLCPGSSQRSPEAAGVQDPSLRWSPGARNQGGGARALLLLLAERFPRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK", "length": 124 }, "evidence": [ { "id": "F8R6K7", "url": "https://omabrowser.org/oma/group/F8R6K7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P55090-1", "protein_name": "Urocortin", "gene_name": "Ucn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRQRGRATLLVALLLLVQLRPESSQWSPAAAAANVVQDPNLRWNPGVRNQGGGVRALLLLLAERFPRRAGSEPAGERQRRDDPPLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK", "length": 122 }, "evidence": [ { "id": "F8R6K7", "url": "https://omabrowser.org/oma/group/F8R6K7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "P81615-1", "protein_name": "Urocortin", "gene_name": "Ucn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MIQRGRATLLVALLLLAQLRPESSQWSPAAAAATGVQDPNLRWSPGVRNQGGGVRALLLLLAERFPRRAGSEPAGERQRRDDPPLSIDLTFHLLRTLLELARTQSQRERAEQNRIIFDSVGK", "length": 122 }, "evidence": [ { "id": "F8R6K7", "url": "https://omabrowser.org/oma/group/F8R6K7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "startle response", "id": "GO:0001964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001964", "evidence": [ { "database": "UniProtKB", "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ], "pmid": "" }, { "name": "negative regulation of feeding behavior", "id": "GO:2000252", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:2000252", "evidence": [ { "database": "UniProtKB", "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ], "pmid": "" }, { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ], "pmid": "" }, { "name": "response to auditory stimulus", "id": "GO:0010996", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010996", "evidence": [ { "database": "UniProtKB", "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ], "pmid": "" }, { "name": "positive regulation of corticotropin secretion", "id": "GO:0051461", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051461", "evidence": [ { "database": "UniProtKB", "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "hormone activity", "id": "GO:0005179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005179", "evidence": [ { "database": "UniProtKB", "id": "F8R6K7", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F8R6K7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F8R6K7" }, { "id": "SM00039", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00039" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Corticotropin-releasing factor", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 124, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "F8S321-1", "uniprot_ac": "F8S321", "uniprot_id": "F8S321_PIG", "mass": { "chemical_mass": 127757.0, "monoisotopic_mass": 127757.0 }, "refseq": {}, "gene_names": [], "protein_names": [ { "name": "Uncharacterized protein", "type": "synonym", "evidence": [ { "id": "F8S321", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F8S321/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "F8S321", "url": "https://www.uniprot.org/uniprotkb/F8S321" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "", "url": "https://www.uniprot.org/uniprotkb/F8S321", "locus": {} } ], "crossref": [ { "id": "ENSSSCG00000034853", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034853", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd03715", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03715", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09273", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000477", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000477", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001995", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001995", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015416", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015416", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021109", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021109", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043502", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043502", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ITIWIDI", "url": "https://omabrowser.org/oma/group/ITIWIDI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR33064", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33064", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33064:SF38", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33064:SF38", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00075", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00075", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00077", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00077", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00078", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00078", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF09337", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09337", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17919", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17919", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "F8S321", "url": "https://www.uniprot.org/uniprotkb/F8S321", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "F8S321-1", "url": "https://www.uniprot.org/uniprotkb/F8S321-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGATGQQQYPWTTRRTVDLGVGRVTHSFLVIPECPAPLLGRDLLTKMGAQISFEQGKPEVSANNKPITVLTLQLDDEYRLYSPLVKPDQNIQFWLEQFPQAWAETAGMGLAKQVPPQVIQLKASAAPVSVRQYPLSKEAREGIRPHVQRLIQQGILVPVQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVQDIHPTVPNPYNLLCALPPQRSWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGAGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDLLLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRREVTYLGYSLRGGQRWLTEARKRTVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGEFSWAPEHQKAFDAIKKALLSAPALALPDVTKPFTLYVDERKGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPVCLKAIAAVAILVKDADKLTLGQNITVIAPHALENIVRQPPDRWMTNARMTHYQSLLLTERVTFAPPAALNPATLLPEETDEPVTHDCHQLLIEETGVRKDLTDIPLTGEVLTWFTDGSSYVVEGKRMAGAAVVDGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSINIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQKAKDPISRGNQMADRVAKQAAQGVNLLPMIETPKAPEPGRQYTLEDWQEIKKIDQFSETPEGTCYTSDGKEILPHKEGLEYVQQIHRLTHLGTKHLQQLVRTSPYHVLRLPGVADSVVKHCVPCQLVNANPSRIPPGKRLRGSHPGAHWEVDFTEVKPAKYGNKYLLVFVDTFSGWVEAYPTKKETSTVVAKKILEEIFPRFGIPKVIGSDNGPAFVAQVSQGLAKILGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTTETGINDWMALLPFVLFRVRNTPGQFGLTPYELLYGGPPPLAEIAFAHSADVLLSQPLFSRLKALEWVRQRAWKQLREAYSGGDLQVPHRFQVGDSVYVRRHRAGNLETRWKGPYLVLLTTPTAVKVEGIPTWIHASHVKPAPPPDSGWKAEKTENPLKLRLHRVVPYSVNNSSS", "length": 1144, "header": "tr|F8S321-1|F8S321_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F8S321-1" }, "isoforms": [ { "isoform_ac": "F8S321-1", "url": "https://www.uniprot.org/uniprotkb/F8S321/entry#F8S321-1", "sequence": { "sequence": "MGATGQQQYPWTTRRTVDLGVGRVTHSFLVIPECPAPLLGRDLLTKMGAQISFEQGKPEVSANNKPITVLTLQLDDEYRLYSPLVKPDQNIQFWLEQFPQAWAETAGMGLAKQVPPQVIQLKASAAPVSVRQYPLSKEAREGIRPHVQRLIQQGILVPVQSPWNTPLLPVRKPGTNDYRPVQDLREVNKRVQDIHPTVPNPYNLLCALPPQRSWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDPGAGRTGQLTWTRLPQGFKNSPTIFDEALHRDLANFRIQHPQVTLLQYVDDLLLAGATKQDCLEGTKALLLELSDLGYRASAKKAQICRREVTYLGYSLRGGQRWLTEARKRTVVQIPAPTTAKQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKGEFSWAPEHQKAFDAIKKALLSAPALALPDVTKPFTLYVDERKGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPVCLKAIAAVAILVKDADKLTLGQNITVIAPHALENIVRQPPDRWMTNARMTHYQSLLLTERVTFAPPAALNPATLLPEETDEPVTHDCHQLLIEETGVRKDLTDIPLTGEVLTWFTDGSSYVVEGKRMAGAAVVDGTRTIWASSLPEGTSAQKAELMALTQALRLAEGKSINIYTDSRYAFATAHVHGAIYKQRGLLTSAGREIKNKEEILSLLEALHLPKRLAIIHCPGHQKAKDPISRGNQMADRVAKQAAQGVNLLPMIETPKAPEPGRQYTLEDWQEIKKIDQFSETPEGTCYTSDGKEILPHKEGLEYVQQIHRLTHLGTKHLQQLVRTSPYHVLRLPGVADSVVKHCVPCQLVNANPSRIPPGKRLRGSHPGAHWEVDFTEVKPAKYGNKYLLVFVDTFSGWVEAYPTKKETSTVVAKKILEEIFPRFGIPKVIGSDNGPAFVAQVSQGLAKILGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTTETGINDWMALLPFVLFRVRNTPGQFGLTPYELLYGGPPPLAEIAFAHSADVLLSQPLFSRLKALEWVRQRAWKQLREAYSGGDLQVPHRFQVGDSVYVRRHRAGNLETRWKGPYLVLLTTPTAVKVEGIPTWIHASHVKPAPPPDSGWKAEKTENPLKLRLHRVVPYSVNNSSS", "length": 1144, "header": "tr|F8S321-1|F8S321_PIG Isoform 1 of Uncharacterized protein OS=Sus scrofa OX=9823 GN= PE=3 SV=1 CANONICAL=F8S321-1" }, "locus": { "chromosome": "Y", "start_pos": 25251911, "end_pos": 25248480, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000059897.3", "url": "https://www.ensembl.org/id/ENSSSCT00000059897.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000035982.1", "url": "https://www.ensembl.org/id/ENSSSCP00000035982.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "F8S321", "url": "https://www.uniprot.org/uniprotkb/F8S321" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "F8S321", "url": "https://www.uniprot.org/uniprotkb/F8S321" } ], "pmid": "" }, { "name": "RNA-DNA hybrid ribonuclease activity", "id": "GO:0004523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004523", "evidence": [ { "database": "UniProtKB", "id": "F8S321", "url": "https://www.uniprot.org/uniprotkb/F8S321" } ], "pmid": "" }, { "name": "aspartic-type endopeptidase activity", "id": "GO:0004190", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004190", "evidence": [ { "database": "UniProtKB", "id": "F8S321", "url": "https://www.uniprot.org/uniprotkb/F8S321" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA recombination", "id": "GO:0006310", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006310", "evidence": [ { "database": "UniProtKB", "id": "F8S321", "url": "https://www.uniprot.org/uniprotkb/F8S321" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "F8S321", "url": "https://www.uniprot.org/uniprotkb/F8S321" } ], "pmid": "" }, { "name": "DNA integration", "id": "GO:0015074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015074", "evidence": [ { "database": "UniProtKB", "id": "F8S321", "url": "https://www.uniprot.org/uniprotkb/F8S321" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1140, "end_pos": 1142, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1141, "end_pos": 1143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 500, "end_pos": 502, "annotation": "n_glycosylation_sequon" }, { "start_pos": 958, "end_pos": 960, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "F8S321", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F8S321" }, { "id": "PS50994", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrase catalytic", "eco_id": "ECO_0000259", "start_pos": 849, "end_pos": 1007, "start_aa": "Arg", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "F8S321", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F8S321" }, { "id": "PS50175", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50175" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase A2", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 43, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "F8S321", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F8S321" }, { "id": "PS50879", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50879" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase H type-1", "eco_id": "ECO_0000259", "start_pos": 584, "end_pos": 730, "start_aa": "Thr", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "F8S321", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/F8S321" }, { "id": "PS50878", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50878" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Reverse transcriptase", "eco_id": "ECO_0000259", "start_pos": 151, "end_pos": 342, "start_aa": "Ile", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1140, "end_pos": 1142 }, { "start_pos": 1141, "end_pos": 1143 }, { "start_pos": 500, "end_pos": 502 }, { "start_pos": 958, "end_pos": 960 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "H6UWK6-1", "uniprot_ac": "H6UWK6", "uniprot_id": "H6UWK6_PIG", "mass": { "chemical_mass": 45926.0, "monoisotopic_mass": 45926.0 }, "refseq": { "ac": "XP_005655478", "name": "olfactomedin-like protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655478" }, "gene_names": [ { "name": "OLFML3", "type": "recommended", "evidence": [ { "id": "H6UWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/H6UWK6" } ] }, { "name": "OLFML3", "type": "synonym", "evidence": [ { "id": "XP_005655478", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655478" } ] } ], "protein_names": [ { "name": "Olfactomedin like 3", "type": "synonym", "evidence": [ { "id": "H6UWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/H6UWK6/entry#names_and_taxonomy" } ] }, { "name": "olfactomedin-like protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_005655478", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655478" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "H6UWK6", "url": "https://www.uniprot.org/uniprotkb/H6UWK6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "OLFML3", "url": "https://www.uniprot.org/uniprotkb/H6UWK6", "locus": { "chromosome": "4", "start_pos": 106563450, "end_pos": 106569771, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000045712", "url": "https://www.ensembl.org/id/ENSSSCG00000045712" } ] } } ], "crossref": [ { "id": "ENSSSCG00000045712", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000045712", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100158055", "url": "https://www.ncbi.nlm.nih.gov/gene/100158055", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100158055", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158055", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "H6UWK6", "url": "https://www.orthodb.org/?gene=H6UWK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23192", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23192", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23192:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23192:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02191", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02191", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_005655478", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_005655478", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "H6UWK6", "url": "https://www.uniprot.org/uniprotkb/H6UWK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "H6UWK6-1", "url": "https://www.uniprot.org/uniprotkb/H6UWK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPRTPVLILVLLSWSGPIQGQQQHLVEYMERRLAALEERLAQCQDQSSRHAAELRDFKNKMLPLLEVAEKEREALRTEADTIAGRVDRLEREVDYLETQNPASPCVEVDEKVTGGPGTKGKGRRRNEKYDMVTDCGYTISQVRSMKILKRFGGPAGLWTKDPLGPTEKIFVLDGTQNDTAFVFPRLRDFTLAMAARKASRIRVPFPWVGTGQLVYGGFLYYARRPPGGPGGGGDLENTLQLIKFHLANRTVVDSSVFPAEGLIPPYGLTADTYIDLAADEEGLWAVYATREDDRHLCLAKLDPQTLDTEQQWDTPCPRENAEAAFVICGTLYVVYNTRPASRARIQCSFDASGTLTPERAALPYFPRRYGAHASLRYNPRERQLYAWDDGYQIVYKLEMRKKEEEV", "length": 407, "header": "tr|H6UWK6-1|H6UWK6_PIG Isoform 1 of Olfactomedin like 3 OS=Sus scrofa OX=9823 GN=OLFML3 PE=1 SV=1 CANONICAL=H6UWK6-1" }, "isoforms": [ { "isoform_ac": "H6UWK6-1", "url": "https://www.uniprot.org/uniprotkb/H6UWK6/entry#H6UWK6-1", "sequence": { "sequence": "MGPRTPVLILVLLSWSGPIQGQQQHLVEYMERRLAALEERLAQCQDQSSRHAAELRDFKNKMLPLLEVAEKEREALRTEADTIAGRVDRLEREVDYLETQNPASPCVEVDEKVTGGPGTKGKGRRRNEKYDMVTDCGYTISQVRSMKILKRFGGPAGLWTKDPLGPTEKIFVLDGTQNDTAFVFPRLRDFTLAMAARKASRIRVPFPWVGTGQLVYGGFLYYARRPPGGPGGGGDLENTLQLIKFHLANRTVVDSSVFPAEGLIPPYGLTADTYIDLAADEEGLWAVYATREDDRHLCLAKLDPQTLDTEQQWDTPCPRENAEAAFVICGTLYVVYNTRPASRARIQCSFDASGTLTPERAALPYFPRRYGAHASLRYNPRERQLYAWDDGYQIVYKLEMRKKEEEV", "length": 407, "header": "tr|H6UWK6-1|H6UWK6_PIG Isoform 1 of Olfactomedin like 3 OS=Sus scrofa OX=9823 GN=OLFML3 PE=1 SV=1 CANONICAL=H6UWK6-1" }, "locus": { "chromosome": "4", "start_pos": 106569713, "end_pos": 106567465, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000069023.1", "url": "https://www.ensembl.org/id/ENSSSCT00000069023.1" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000074485.1", "url": "https://www.ensembl.org/id/ENSSSCP00000074485.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "H6UWK6", "url": "https://www.uniprot.org/uniprotkb/H6UWK6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100158055", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100158055", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "H6UWK6", "url": "https://www.uniprot.org/uniprotkb/H6UWK6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "H6UWK6", "url": "https://www.uniprot.org/uniprotkb/H6UWK6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "pyruvate synthase activity", "id": "GO:0019164", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019164", "evidence": [ { "database": "UniProtKB", "id": "H6UWK6", "url": "https://www.uniprot.org/uniprotkb/H6UWK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "H6UWK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/H6UWK6" }, { "id": "PS51132", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51132" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Olfactomedin-like", "eco_id": "ECO_0000259", "start_pos": 135, "end_pos": 402, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 }, { "start_pos": 249, "end_pos": 251 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L555-1", "uniprot_ac": "I3L555", "uniprot_id": "I3L555_PIG", "mass": { "chemical_mass": 46272.0, "monoisotopic_mass": 46272.0 }, "refseq": {}, "gene_names": [ { "name": "ACP4", "type": "recommended", "evidence": [ { "id": "I3L555", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ] } ], "protein_names": [ { "name": "acid phosphatase", "type": "recommended", "evidence": [ { "id": "I3L555", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L555/entry#names_and_taxonomy" } ] }, { "name": "3.1.3.2", "type": "synonym", "evidence": [ { "id": "I3L555", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L555/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ACP4", "url": "https://www.uniprot.org/uniprotkb/I3L555", "locus": { "chromosome": "6", "start_pos": 55541968, "end_pos": 55536904, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000024736", "url": "https://www.ensembl.org/id/ENSSSCG00000024736" } ] } } ], "crossref": [ { "id": "I3L555", "url": "https://alphafold.ebi.ac.uk/entry/I3L555", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000024736", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000024736", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd07061", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07061", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100620403", "url": "https://www.ncbi.nlm.nih.gov/gene/100620403", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000560", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000560", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029033", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029033", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033379", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033379", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100620403", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620403", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VPCHGSR", "url": "https://omabrowser.org/oma/group/VPCHGSR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L555", "url": "https://www.orthodb.org/?gene=I3L555", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11567", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11567", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11567:SF145", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11567:SF145", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00328", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00328", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "15017", "url": "https://www.rhea-db.org/rhea/15017", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L555-1", "url": "https://www.uniprot.org/uniprotkb/I3L555-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGPGFRGHPAGPLLLLLLLLLRQALTEGPLVFVAVVFRHGDRAPLASYPTDPHKENIATLWPRGLGQLTREGVHQQLELGRFLRSRYESFLSPQYRREEVYIRSTDFDRTLESAQANLAGLFPEASPGRSEATWQPIPVHTVPVTEDKLLRFPTRSCPRYRELLREATEAAEYKAALEGWTDFLTRLENFTGLSLVGEPLRKAWKVLDTLICQQAHGLPLPSWASPDVLQTLAQISALDIGAHVGPPRAAEKAQLTGGILLDAILANFSRVQHLGLPLKMVMYSAHDSTLLALQGALGLYDGHTPPYAACLGFEFRRHLGDLDDNRGNVTISLFYRNDSTGLPLTLKLPGCPAPCSLGRFRQLTAPARPSVQGIPCHGSHEPATPAATVVPLLSGAVAVLAVLSMGLGLMAWRPGCLRAWGGPV", "length": 425, "header": "tr|I3L555-1|I3L555_PIG Isoform 1 of acid phosphatase OS=Sus scrofa OX=9823 GN=ACP4 PE=3 SV=2 CANONICAL=I3L555-1" }, "isoforms": [ { "isoform_ac": "I3L555-1", "url": "https://www.uniprot.org/uniprotkb/I3L555/entry#I3L555-1", "sequence": { "sequence": "MAGPGFRGHPAGPLLLLLLLLLRQALTEGPLVFVAVVFRHGDRAPLASYPTDPHKENIATLWPRGLGQLTREGVHQQLELGRFLRSRYESFLSPQYRREEVYIRSTDFDRTLESAQANLAGLFPEASPGRSEATWQPIPVHTVPVTEDKLLRFPTRSCPRYRELLREATEAAEYKAALEGWTDFLTRLENFTGLSLVGEPLRKAWKVLDTLICQQAHGLPLPSWASPDVLQTLAQISALDIGAHVGPPRAAEKAQLTGGILLDAILANFSRVQHLGLPLKMVMYSAHDSTLLALQGALGLYDGHTPPYAACLGFEFRRHLGDLDDNRGNVTISLFYRNDSTGLPLTLKLPGCPAPCSLGRFRQLTAPARPSVQGIPCHGSHEPATPAATVVPLLSGAVAVLAVLSMGLGLMAWRPGCLRAWGGPV", "length": 425, "header": "tr|I3L555-1|I3L555_PIG Isoform 1 of acid phosphatase OS=Sus scrofa OX=9823 GN=ACP4 PE=3 SV=2 CANONICAL=I3L555-1" }, "locus": { "chromosome": "6", "start_pos": 55541859, "end_pos": 55537663, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032085.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032085.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019154.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019154.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100620403", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100620403", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GH32-1", "protein_name": "acid phosphatase", "gene_name": "Acp4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MHHWRSPVLCSVLRLETQGTYMVFRHGDRAPLASYPTDPHKEAASTLWPRGLGQLTKEGIRQQLELGRFLRRRYKAFLSPEYRREEVYIRSTDFDRTLESAQANLAGLFPEAAPGSPEADWKPIPVHTVPVSEDKLLRFPMRSCPRYHELLRESTEAADYQEALEGWTDFLTRLGNFTGLSLVGEPLRRAWKVLDTLICQRAHGLALPSWASPDVLRTLSQISALDIRAHVGPPRAAEKAQLTGGILLDAILSNFSRAQRLGLPLKMVMYSAHDSTLLALQGALGLYDGNTPPYAACMAFEFRGSSREPEEEDGENVTVSLIYRNDTSRPPLPLRVPGCPAPCPLGRFQQLTAPARPPAHGAPCHGSYEPASPPDRWSILWKQAKGGQVRLCLTCPGPSSSPRFYPRRDRIKQHTPQRAMIQPFNRNSRRQKFQGCPPHPSTKSRSTLARGHLCSQGDQTQLEGASRGKGMVKRKWGQGPQSKVFTKGGSPPHKKVSHKLKIKYKVKMLH", "length": 510 }, "evidence": [ { "id": "I3L555", "url": "https://omabrowser.org/oma/group/I3L555/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "D3YTS9-1", "protein_name": "Testicular acid phosphatase", "gene_name": "Acp4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAEPGSQGHTVGPLLLLLLLLLPRALPEGPLLFVALVFRHGDRAPLASYPTDPHKEAASTLWPRGLGQLTKEGIRQQLELGRFLRRRYKAFLSPEYKREEVYIRSTDFDRTLESAQANLAGLFPEAAPGSPETDWKPIPVHTVPVSEDKLLRFPMRSCPRYHELLRESTEAADYQEALEGWTDFLTRLGNFTGLSLVGEPLRRAWKVLDTLICQRAHGLDLPSWASPDVLRTLSQISALDIRAHVGPPRAAEKAQLTGGILLDAILSNFSRTQRLGLPLKMVMYSAHDSTLLALQGALGLYDGNTPPYAACMAFEFRGSSREPEEEDGENVTVSLIYRNDTSRPPLPLRVPGCPAPCPLGRFQQLTAPARPPAHGAPCHGSYEPASPPATVPLLAGAVAVLAVLSLGLGLLAWRPRCLRALGGTV", "length": 425 }, "evidence": [ { "id": "I3L555", "url": "https://omabrowser.org/oma/group/I3L555/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8I0P9-1", "protein_name": "acid phosphatase", "gene_name": "Acph-1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MFSRSRCGSLVTSVARKMWNHPSQRWLILICVICLLSFALANSLHGYANAEGHPVEISATLPGQLKFVHVIYRHGDRTPVDPYPTDPWGDRKFWPTGWGDLTNLGKQEHYDLGKWLRNRYSNLLPPIYSNENIYVQSTDVDRTLMSAQSNLAGLYEPQGEDIWNTDINWQPIPIHTSPEREDPILAAKAPCPAYDYELASLESSPEFKALTEKHRNLFAYLSEKGGRPVKTFIDAQYLNNTLFIENLYNMTLPKWTKMVYGREELTYVSNFAFAISSYTRKLARLKAGPLLKDIFQRFKEKSSGSLKPDRSMWVYSAHDTTVASVLNALKLFELHSPPYTACIMMELRVDETNTPLVSIFYKNTTAEPLPLDIPGCGPSCPLTKLMNIYEDVLPVDWERECKLSTMMMTYEEANLGTATGILILIVIALLFASYGLMIYYRRRNYKLYSSYSQMA", "length": 455 }, "evidence": [ { "id": "I3L555", "url": "https://omabrowser.org/oma/group/I3L555/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9BZG2-1", "protein_name": "Testicular acid phosphatase", "gene_name": "ACP4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAGLGFWGHPAGPLLLLLLLVLPPRALPEGPLVFVALVFRHGDRAPLASYPMDPHKEVASTLWPRGLGQLTTEGVRQQLELGRFLRSRYEAFLSPEYRREEVYIRSTDFDRTLESAQANLAGLFPEAAPGSPEARWRPIPVHTVPVAEDKLLRFPMRSCPRYHELLREATEAAEYQEALEGWTGFLSRLENFTGLSLVGEPLRRAWKVLDTLMCQQAHGLPLPAWASPDVLRTLAQISALDIGAHVGPPRAAEKAQLTGGILLNAILANFSRVQRLGLPLKMVMYSAHDSTLLALQGALGLYDGHTPPYAACLGFEFRKHLGNPAKDGGNVTVSLFYRNDSAHLPLPLSLPGCPAPCPLGRFYQLTAPARPPAHGVSCHGPYEAAIPPAPVVPLLAGAVAVLVALSLGLGLLAWRPGCLRALGGPV", "length": 426 }, "evidence": [ { "id": "I3L555", "url": "https://omabrowser.org/oma/group/I3L555/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "negative regulation of neuron projection development", "id": "GO:0010977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010977", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "pmid": "" }, { "name": "odontogenesis", "id": "GO:0042476", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042476", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "pmid": "" }, { "name": "regulation of neuronal synaptic plasticity", "id": "GO:0048168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048168", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "pmid": "" }, { "name": "negative regulation of protein processing", "id": "GO:0010955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010955", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "pmid": "" }, { "name": "negative regulation of ERBB4 signaling pathway", "id": "GO:0120154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120154", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "acid phosphatase activity", "id": "GO:0003993", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003993", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "pmid": "" }, { "name": "receptor tyrosine kinase binding", "id": "GO:0030971", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030971", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "pmid": "" }, { "name": "protein tyrosine phosphatase activity", "id": "GO:0004725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004725", "evidence": [ { "database": "UniProtKB", "id": "I3L555", "url": "https://www.uniprot.org/uniprotkb/I3L555" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 190, "end_pos": 192, "annotation": "n_glycosylation_sequon" }, { "start_pos": 268, "end_pos": 270, "annotation": "n_glycosylation_sequon" }, { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" }, { "start_pos": 338, "end_pos": 340, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "15017", "name": "", "equation": "a phosphate monoester + H2O = an alcohol + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "15017", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15017" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L555-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 425, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L555-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L555" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 190, "end_pos": 192 }, { "start_pos": 268, "end_pos": 270 }, { "start_pos": 329, "end_pos": 331 }, { "start_pos": 338, "end_pos": 340 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L560-1", "uniprot_ac": "I3L560", "uniprot_id": "I3L560_PIG", "mass": { "chemical_mass": 120609.0, "monoisotopic_mass": 120609.0 }, "refseq": {}, "gene_names": [ { "name": "KLB", "type": "recommended", "evidence": [ { "id": "I3L560", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L560" } ] } ], "protein_names": [ { "name": "Klotho beta", "type": "synonym", "evidence": [ { "id": "I3L560", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L560/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L560", "url": "https://www.uniprot.org/uniprotkb/I3L560" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KLB", "url": "https://www.uniprot.org/uniprotkb/I3L560", "locus": { "chromosome": "8", "start_pos": 30691349, "end_pos": 30653572, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000026297", "url": "https://www.ensembl.org/id/ENSSSCG00000026297" } ] } } ], "crossref": [ { "id": "I3L560", "url": "https://alphafold.ebi.ac.uk/entry/I3L560", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000026297", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000026297", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001360", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001360", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10353", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10353", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10353:SF68", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10353:SF68", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00232", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00232", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-109704", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-109704", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1257604", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1257604", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-1307965", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1307965", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654228", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654228", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654712", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654712", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654719", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654719", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654720", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654720", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5654733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-5673001", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6811558", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811558", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L560", "url": "https://www.uniprot.org/uniprotkb/I3L560", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L560-1", "url": "https://www.uniprot.org/uniprotkb/I3L560-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPGCAASPGNEWIFFSTDERNIHYRKTMSSGGLQRSVILSAFILLRAVTGFSGDGRAIWSKNPNFSPVNESQLFLYDTFPKNFFWGVGTGAFQVEGNWKTDGKGPSIWDYFIHTHLKNVNSMNSSSDSYIFLEKDLSALDFIGVSFYQFSISWPRLFPDGIVSVANAKGLQYYNTLLNALVLRNIEPIVTLYHWDLPLALQEKYGGWKNETVIDIFNDYATYCFQTFGDRVKYWITIHNPYLVAWHGYGTGIHAPGEKGNLAAVYTVGHNLIKAHSKVWHNYNRNFRPHQKGWLSITLGSHWIEPNRSENTMDILKCQQSMVSVLGWFASPIHGDGDYPEVMKKKLLSVLPQFSDAEKNEVRGTADFFAFSFGPNNFKPHNTMAKMGQNVSLNLREVLNWIKLEYGNPRILITENGWFTDSHVKTEDTTAIYMMKNFLNQVLQAIKFDEIQVFGYTAWSLLDGFEWQDVYTTRRGLFYVDFNSKHKERKPKSSARYYKQIIQENGFTLKESTPDVQGQFPCDFSWGVTESVLKPESVASSPQYSDPHLYVWNVTGNRLLHRVEGVRLKTRPAQCTDLVGVKRQLEMLAKMKVTHYRFALDWPSILPTGNLSMVNRQALRYYRCVVSEGLKLNISSMVTLYYPTHAHLGLPEPLLHSGGWLNRSTAKAFQDYADLCFRELGDLVKLWITINEPNRLSDIYERSSNDTYWAAHHLLIAHALAWHLYDRQYRPAQRGALSLSLHSDWAEPANPYADSHWKAAERFLQFEIAWFAEPVFKSGDYPLAMREYIAFKNRQGLSSSTLPQFTEEERRLVKGTADFYALNHFTTRFVMHERQNGSSYGTDRDIQFLQDITCLSSPTRLAVVPWGERKVLRWIRRNYGDVDVYITASGIDDQSLENDELRKYYLEKYIQEALKAHLLDKVKIKGYYIFKLTEEKSRPRFGFFTSDFKAKSSIQFYNKLISNNGFPSENGSPQCSQTHRNTECIVCLFLVQKKPLIFFGCCFFSTLLLFLSITIFHKRKRRKFWKAKNLQHIPLKKGHKRVIS", "length": 1044, "header": "tr|I3L560-1|I3L560_PIG Isoform 1 of Klotho beta OS=Sus scrofa OX=9823 GN=KLB PE=3 SV=3 CANONICAL=I3L560-1" }, "isoforms": [ { "isoform_ac": "I3L560-1", "url": "https://www.uniprot.org/uniprotkb/I3L560/entry#I3L560-1", "sequence": { "sequence": "MKPGCAASPGNEWIFFSTDERNIHYRKTMSSGGLQRSVILSAFILLRAVTGFSGDGRAIWSKNPNFSPVNESQLFLYDTFPKNFFWGVGTGAFQVEGNWKTDGKGPSIWDYFIHTHLKNVNSMNSSSDSYIFLEKDLSALDFIGVSFYQFSISWPRLFPDGIVSVANAKGLQYYNTLLNALVLRNIEPIVTLYHWDLPLALQEKYGGWKNETVIDIFNDYATYCFQTFGDRVKYWITIHNPYLVAWHGYGTGIHAPGEKGNLAAVYTVGHNLIKAHSKVWHNYNRNFRPHQKGWLSITLGSHWIEPNRSENTMDILKCQQSMVSVLGWFASPIHGDGDYPEVMKKKLLSVLPQFSDAEKNEVRGTADFFAFSFGPNNFKPHNTMAKMGQNVSLNLREVLNWIKLEYGNPRILITENGWFTDSHVKTEDTTAIYMMKNFLNQVLQAIKFDEIQVFGYTAWSLLDGFEWQDVYTTRRGLFYVDFNSKHKERKPKSSARYYKQIIQENGFTLKESTPDVQGQFPCDFSWGVTESVLKPESVASSPQYSDPHLYVWNVTGNRLLHRVEGVRLKTRPAQCTDLVGVKRQLEMLAKMKVTHYRFALDWPSILPTGNLSMVNRQALRYYRCVVSEGLKLNISSMVTLYYPTHAHLGLPEPLLHSGGWLNRSTAKAFQDYADLCFRELGDLVKLWITINEPNRLSDIYERSSNDTYWAAHHLLIAHALAWHLYDRQYRPAQRGALSLSLHSDWAEPANPYADSHWKAAERFLQFEIAWFAEPVFKSGDYPLAMREYIAFKNRQGLSSSTLPQFTEEERRLVKGTADFYALNHFTTRFVMHERQNGSSYGTDRDIQFLQDITCLSSPTRLAVVPWGERKVLRWIRRNYGDVDVYITASGIDDQSLENDELRKYYLEKYIQEALKAHLLDKVKIKGYYIFKLTEEKSRPRFGFFTSDFKAKSSIQFYNKLISNNGFPSENGSPQCSQTHRNTECIVCLFLVQKKPLIFFGCCFFSTLLLFLSITIFHKRKRRKFWKAKNLQHIPLKKGHKRVIS", "length": 1044, "header": "tr|I3L560-1|I3L560_PIG Isoform 1 of Klotho beta OS=Sus scrofa OX=9823 GN=KLB PE=3 SV=3 CANONICAL=I3L560-1" }, "locus": { "chromosome": "8", "start_pos": 30688413, "end_pos": 30653572, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028090.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028090.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019159.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019159.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L560", "url": "https://www.uniprot.org/uniprotkb/I3L560" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-109704", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-109704", "resource": "Reactome", "description": "PI3K Cascade" }, { "id": "R-SSC-1257604", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1257604", "resource": "Reactome", "description": "PIP3 activates AKT signaling" }, { "id": "R-SSC-1307965", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1307965", "resource": "Reactome", "description": "betaKlotho-mediated ligand binding" }, { "id": "R-SSC-5654228", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654228", "resource": "Reactome", "description": "Phospholipase C-mediated cascade; FGFR4" }, { "id": "R-SSC-5654712", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654712", "resource": "Reactome", "description": "FRS-mediated FGFR4 signaling" }, { "id": "R-SSC-5654719", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654719", "resource": "Reactome", "description": "SHC-mediated cascade:FGFR4" }, { "id": "R-SSC-5654720", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654720", "resource": "Reactome", "description": "PI-3K cascade:FGFR4" }, { "id": "R-SSC-5654733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5654733", "resource": "Reactome", "description": "Negative regulation of FGFR4 signaling" }, { "id": "R-SSC-5673001", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-5673001", "resource": "Reactome", "description": "RAF/MAP kinase cascade" }, { "id": "R-SSC-6811558", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6811558", "resource": "Reactome", "description": "PI5P, PP2A and IER3 Regulate PI3K/AKT Signaling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity, hydrolyzing O-glycosyl compounds", "id": "GO:0004553", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004553", "evidence": [ { "database": "UniProtKB", "id": "I3L560", "url": "https://www.uniprot.org/uniprotkb/I3L560" } ], "pmid": "" }, { "name": "fibroblast growth factor binding", "id": "GO:0017134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017134", "evidence": [ { "database": "UniProtKB", "id": "I3L560", "url": "https://www.uniprot.org/uniprotkb/I3L560" } ], "pmid": "" }, { "name": "fibroblast growth factor receptor binding", "id": "GO:0005104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005104", "evidence": [ { "database": "UniProtKB", "id": "I3L560", "url": "https://www.uniprot.org/uniprotkb/I3L560" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L560", "url": "https://www.uniprot.org/uniprotkb/I3L560" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "I3L560", "url": "https://www.uniprot.org/uniprotkb/I3L560" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 307, "end_pos": 309, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" }, { "start_pos": 553, "end_pos": 555, "annotation": "n_glycosylation_sequon" }, { "start_pos": 610, "end_pos": 612, "annotation": "n_glycosylation_sequon" }, { "start_pos": 633, "end_pos": 635, "annotation": "n_glycosylation_sequon" }, { "start_pos": 65, "end_pos": 67, "annotation": "n_glycosylation_sequon" }, { "start_pos": 662, "end_pos": 664, "annotation": "n_glycosylation_sequon" }, { "start_pos": 705, "end_pos": 707, "annotation": "n_glycosylation_sequon" }, { "start_pos": 70, "end_pos": 72, "annotation": "n_glycosylation_sequon" }, { "start_pos": 836, "end_pos": 838, "annotation": "n_glycosylation_sequon" }, { "start_pos": 970, "end_pos": 972, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L560-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1044, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L560-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L560" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 }, { "start_pos": 210, "end_pos": 212 }, { "start_pos": 307, "end_pos": 309 }, { "start_pos": 390, "end_pos": 392 }, { "start_pos": 553, "end_pos": 555 }, { "start_pos": 610, "end_pos": 612 }, { "start_pos": 633, "end_pos": 635 }, { "start_pos": 65, "end_pos": 67 }, { "start_pos": 662, "end_pos": 664 }, { "start_pos": 705, "end_pos": 707 }, { "start_pos": 70, "end_pos": 72 }, { "start_pos": 836, "end_pos": 838 }, { "start_pos": 970, "end_pos": 972 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L565-1", "uniprot_ac": "I3L565", "uniprot_id": "I3L565_PIG", "mass": { "chemical_mass": 36177.0, "monoisotopic_mass": 36177.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100156296", "type": "recommended", "evidence": [ { "id": "I3L565", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L565" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "I3L565", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L565/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "I3L565", "url": "https://www.uniprot.org/uniprotkb/I3L565#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L565", "url": "https://www.uniprot.org/uniprotkb/I3L565" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100156296", "url": "https://www.uniprot.org/uniprotkb/I3L565", "locus": {} } ], "crossref": [ { "id": "I3L565", "url": "https://alphafold.ebi.ac.uk/entry/I3L565", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034235", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034235", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd15912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047132", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047132", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "KTIDHFM", "url": "https://omabrowser.org/oma/group/KTIDHFM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR26454:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26454:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "I3L565", "url": "https://www.uniprot.org/uniprotkb/I3L565", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L565-1", "url": "https://www.uniprot.org/uniprotkb/I3L565-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENQSMEIEFILLGLTDDPQLQIVIFLFLFVNYTLSLMGNVIIILLTLLDPRLKTPMYFFLRNFSFLEIIFTTVCIPRFLVTIVTKEKTISYNNCAAQLFFILLLGVTEFYLLAAMSYDRYVAICKPLHYPILMNSKVCYQLVFSSWVTGFLIIFPPLVMGLKLDFCASRVIDHFMCETSPILQISCTDTRVLELMSFILAVVTLVVTLILVILSYIYIIRNILKFPSTQQRTKAFSTCTSHMIVVSLTYGSCIFMYMKPSARERVTVSKGVALLYTSVAPLLNPFIYTLRNQQVKEVFWDMLQKVVCFPKKQL", "length": 314, "header": "tr|I3L565-1|I3L565_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100156296 PE=3 SV=2 CANONICAL=I3L565-1" }, "isoforms": [ { "isoform_ac": "I3L565-1", "url": "https://www.uniprot.org/uniprotkb/I3L565/entry#I3L565-1", "sequence": { "sequence": "MENQSMEIEFILLGLTDDPQLQIVIFLFLFVNYTLSLMGNVIIILLTLLDPRLKTPMYFFLRNFSFLEIIFTTVCIPRFLVTIVTKEKTISYNNCAAQLFFILLLGVTEFYLLAAMSYDRYVAICKPLHYPILMNSKVCYQLVFSSWVTGFLIIFPPLVMGLKLDFCASRVIDHFMCETSPILQISCTDTRVLELMSFILAVVTLVVTLILVILSYIYIIRNILKFPSTQQRTKAFSTCTSHMIVVSLTYGSCIFMYMKPSARERVTVSKGVALLYTSVAPLLNPFIYTLRNQQVKEVFWDMLQKVVCFPKKQL", "length": 314, "header": "tr|I3L565-1|I3L565_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100156296 PE=3 SV=2 CANONICAL=I3L565-1" }, "locus": { "chromosome": "AEMK02000577.1", "start_pos": 90160, "end_pos": 89219, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022877.3", "url": "https://www.ensembl.org/id/ENSSSCT00000022877.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019164.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019164.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L565", "url": "https://www.uniprot.org/uniprotkb/I3L565" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6AU47-1", "protein_name": "Olfactory receptor", "gene_name": "Or6c6f", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKNQSMELDFILLGLTDDPGLQIVVFLFLFLNYITGLLGNLIIVLLTLLDPRLKTPMYFFLRNFSFLEIMFTTVCIPRFLTTIVTGDKTISYNSCASQLFFYLLLGVTEFYLLAAMSYDRYVAICRPLHYPIIMNSRVCRQLVLSSWVTGFLIIFPPVAMGLKLDFCDSRVIDHFMCETSPILQISCTDTHILEMMSFALAVVTLIVTLVLVSLSYSFIIKTIMNFPSAQQRTKAFSTCTSHMIVVSTTYGSCIFMYIKPSARERVAMSKGVALLYTSIAPLLNPFIYTLRNHQVKEVFWDVLQKTMGSLKNNF", "length": 314 }, "evidence": [ { "id": "I3L565", "url": "https://omabrowser.org/oma/group/I3L565/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6NF89-1", "protein_name": "Olfactory receptor 6C6", "gene_name": "OR6C6", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKNKSMEIEFILLGLTDDPQLQIVIFLFLFLNYTLSLMGNLIIIILTLLDPRLKTPMYFFLRNFSFLEVIFTTVCIPRFLITIVTRDKTISYNNCATQLFFILLPGVTEFYLLAAMSYDRYVAICKPLHYPIIMSSKVCYQLVLSSWVTGFLIIFPPLVMGLKLDFCASKTIDHFMCETSPILQISCTDTHVLELMSFTLAVVTLVVTLVLVILSYTCIIKTILKFSSAQQRNKAFSTCTSHMIVVSMTYGSCIFMYIKPSAKERVTVSKGVALLYTSIAPLLNPFIYTLRNQQVKEVFWDVLQKNLCFSKRPF", "length": 314 }, "evidence": [ { "id": "I3L565", "url": "https://omabrowser.org/oma/group/I3L565/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q7TRI2-1", "protein_name": "Olfactory receptor", "gene_name": "Or6c6", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKNKSMELDFILLGLTDDPQLQIVVFLFLFLNYVMSLVGNLIIVLLTLLDPRLKTPMYFFLRNFSFLEIMFTTVCIPRFLTTIVTGDKTITYNNCAAQLFFILLLGVTEFYLLAAMSYDRYVAICRPLHYPIIMNSKVCHQLVLSSWVTGFLIIFPPLAMGLKLDFCDSRIIDHFMCETSPILQISCTDTHVLEMMSFVLAVVTLVVTLVLVSLSYSFIIKTIMSFPSAQQRTKAFSTCTSHMIVVSITYGSCIFMYTKPSARERVSVSKGVALLYTSIAPLLNPFIYTLRNQQVKEVFWDVLQKTLGFSKHKV", "length": 314 }, "evidence": [ { "id": "I3L565", "url": "https://omabrowser.org/oma/group/I3L565/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "I3L565", "url": "https://www.uniprot.org/uniprotkb/I3L565" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "I3L565", "url": "https://www.uniprot.org/uniprotkb/I3L565" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L565", "url": "https://www.uniprot.org/uniprotkb/I3L565" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 32, "end_pos": 34, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L565-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 314, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L565-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L565" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L565", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L565" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 288, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 32, "end_pos": 34 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L578-1", "uniprot_ac": "I3L578", "uniprot_id": "I3L578_PIG", "mass": { "chemical_mass": 60220.0, "monoisotopic_mass": 60220.0 }, "refseq": { "ac": "XP_020934529", "name": "acid-sensing ion channel 3 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934529" }, "gene_names": [ { "name": "ASIC3", "type": "recommended", "evidence": [ { "id": "I3L578", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L578" } ] }, { "name": "ASIC3", "type": "synonym", "evidence": [ { "id": "XP_020934529", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934529" } ] } ], "protein_names": [ { "name": "Acid sensing ion channel subunit 3", "type": "synonym", "evidence": [ { "id": "I3L578", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L578/entry#names_and_taxonomy" } ] }, { "name": "acid-sensing ion channel 3 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_020934529", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934529" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L578", "url": "https://www.uniprot.org/uniprotkb/I3L578" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ASIC3", "url": "https://www.uniprot.org/uniprotkb/I3L578", "locus": { "chromosome": "18", "start_pos": 6172471, "end_pos": 6180440, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027024", "url": "https://www.ensembl.org/id/ENSSSCG00000027024" } ] } } ], "crossref": [ { "id": "I3L578", "url": "https://alphafold.ebi.ac.uk/entry/I3L578", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027024", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027024", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100625143", "url": "https://www.ncbi.nlm.nih.gov/gene/100625143", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004724", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004724", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "I3L578", "url": "https://www.orthodb.org/?gene=I3L578", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11690:SF228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11690:SF228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00858", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00858", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-2672351", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_020934529", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020934529", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "34963", "url": "https://www.rhea-db.org/rhea/34963", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L578", "url": "https://www.uniprot.org/uniprotkb/I3L578", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L578-1", "url": "https://www.uniprot.org/uniprotkb/I3L578-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKPPSGPEEAQRPASDIRVFASNCSMHGLGHIFGPGGLTPRRGLWAAAVLLSLATFLYQVAGRVRYYGEFHHETALEERESHRLTFPAVTLCNINALRRSRLTPNDLHWAGPGLLGLEPAEHAAYLRALGRPPAPPGFMPSPSYDVARLYARAGHALEDMLLDCRYRGWPCGPENFTTIFTKMGQCYTFNSGANGAELLTTPKGGMGSGLEVMLDVQQDEYLPVWRDVEETPFEVGIRVQIHSQEEPPLIDQLGFGVAPGYQTFVSCQKQQLSFLPPPWGDCSSVPLDPDFEPEPSDPLGPSSPSPVPSPPYTLMGCRLACQTRFVTRKCGCRMMHMPGGAPVCSPQQYKDCAHPALDAMLRQDVCTCPNPCATTRYAKELSMVRIPSRASARYLARKHNRSEAYIEENVLVLDIFFEALNYETVEQKKAYEVSELLGDIGGQMGLFIGASLLTILEILDFLCEVFRDRVLGYFWKRKRSQRHSSTNLLQEGLGSHGTQAPHLSLGLSAVVCVSPGLPLPSPRRSLPPTARATWSPSSRLSVLRAAP", "length": 547, "header": "tr|I3L578-1|I3L578_PIG Isoform 1 of Acid sensing ion channel subunit 3 OS=Sus scrofa OX=9823 GN=ASIC3 PE=4 SV=4 CANONICAL=I3L578-1" }, "isoforms": [ { "isoform_ac": "I3L578-1", "url": "https://www.uniprot.org/uniprotkb/I3L578/entry#I3L578-1", "sequence": { "sequence": "MKPPSGPEEAQRPASDIRVFASNCSMHGLGHIFGPGGLTPRRGLWAAAVLLSLATFLYQVAGRVRYYGEFHHETALEERESHRLTFPAVTLCNINALRRSRLTPNDLHWAGPGLLGLEPAEHAAYLRALGRPPAPPGFMPSPSYDVARLYARAGHALEDMLLDCRYRGWPCGPENFTTIFTKMGQCYTFNSGANGAELLTTPKGGMGSGLEVMLDVQQDEYLPVWRDVEETPFEVGIRVQIHSQEEPPLIDQLGFGVAPGYQTFVSCQKQQLSFLPPPWGDCSSVPLDPDFEPEPSDPLGPSSPSPVPSPPYTLMGCRLACQTRFVTRKCGCRMMHMPGGAPVCSPQQYKDCAHPALDAMLRQDVCTCPNPCATTRYAKELSMVRIPSRASARYLARKHNRSEAYIEENVLVLDIFFEALNYETVEQKKAYEVSELLGDIGGQMGLFIGASLLTILEILDFLCEVFRDRVLGYFWKRKRSQRHSSTNLLQEGLGSHGTQAPHLSLGLSAVVCVSPGLPLPSPRRSLPPTARATWSPSSRLSVLRAAP", "length": 547, "header": "tr|I3L578-1|I3L578_PIG Isoform 1 of Acid sensing ion channel subunit 3 OS=Sus scrofa OX=9823 GN=ASIC3 PE=4 SV=4 CANONICAL=I3L578-1" }, "locus": { "chromosome": "18", "start_pos": 6176305, "end_pos": 6172474, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027326.4", "url": "https://www.ensembl.org/id/ENSSSCT00000027326.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019177.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019177.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L578", "url": "https://www.uniprot.org/uniprotkb/I3L578" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-2672351", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-2672351", "resource": "Reactome", "description": "Stimuli-sensing channels" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L578", "url": "https://www.uniprot.org/uniprotkb/I3L578" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "membrane depolarization", "id": "GO:0051899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051899", "evidence": [ { "database": "UniProtKB", "id": "I3L578", "url": "https://www.uniprot.org/uniprotkb/I3L578" } ], "pmid": "" }, { "name": "sodium ion transmembrane transport", "id": "GO:0035725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035725", "evidence": [ { "database": "UniProtKB", "id": "I3L578", "url": "https://www.uniprot.org/uniprotkb/I3L578" } ], "pmid": "" }, { "name": "sensory perception of sour taste", "id": "GO:0050915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050915", "evidence": [ { "database": "UniProtKB", "id": "I3L578", "url": "https://www.uniprot.org/uniprotkb/I3L578" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "monoatomic ion-gated channel activity", "id": "GO:0022839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022839", "evidence": [ { "database": "UniProtKB", "id": "I3L578", "url": "https://www.uniprot.org/uniprotkb/I3L578" } ], "pmid": "" }, { "name": "pH-gated sodium channel activity", "id": "GO:0160125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0160125", "evidence": [ { "database": "UniProtKB", "id": "I3L578", "url": "https://www.uniprot.org/uniprotkb/I3L578" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 175, "end_pos": 177, "annotation": "n_glycosylation_sequon" }, { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "34963", "name": "", "equation": "Na(+)(in) = Na(+)(out)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "34963", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/34963" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L578-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 547, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L578-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L578" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 175, "end_pos": 177 }, { "start_pos": 23, "end_pos": 25 }, { "start_pos": 400, "end_pos": 402 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L598-1", "uniprot_ac": "I3L598", "uniprot_id": "I3L598_PIG", "mass": { "chemical_mass": 116911.0, "monoisotopic_mass": 116911.0 }, "refseq": { "ac": "XP_020932637", "name": "zinc finger RNA-binding protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932637" }, "gene_names": [ { "name": "ZFR", "type": "recommended", "evidence": [ { "id": "I3L598", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L598" } ] }, { "name": "ZFR", "type": "synonym", "evidence": [ { "id": "XP_020932637", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932637" } ] } ], "protein_names": [ { "name": "Zinc finger RNA-binding protein", "type": "recommended", "evidence": [ { "id": "I3L598", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L598/entry#names_and_taxonomy" } ] }, { "name": "zinc finger RNA-binding protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_020932637", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932637" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L598", "url": "https://www.uniprot.org/uniprotkb/I3L598" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZFR", "url": "https://www.uniprot.org/uniprotkb/I3L598", "locus": { "chromosome": "16", "start_pos": 18560280, "end_pos": 18656294, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027681", "url": "https://www.ensembl.org/id/ENSSSCG00000027681" } ] } } ], "crossref": [ { "id": "I3L598", "url": "https://alphafold.ebi.ac.uk/entry/I3L598", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027681", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027681", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100624470", "url": "https://www.ncbi.nlm.nih.gov/gene/100624470", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003604", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003604", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043519", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043519", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049401", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049401", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049402", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049402", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR45762", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45762", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45762:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45762:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07528", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07528", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20965", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20965", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_020932637", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_020932637", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "I3L598", "url": "https://www.uniprot.org/uniprotkb/I3L598", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L598-1", "url": "https://www.uniprot.org/uniprotkb/I3L598-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCI4", "url": "https://www.uniprot.org/uniprotkb/I3LCI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LCI4-1", "url": "https://www.uniprot.org/uniprotkb/I3LCI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSQQPASGVAYSHPTTVASYTVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQDSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQTAPKAGYSQGATQYTQAQQTRQVTAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTTAVTYSGTSYSGYEAAVYSAASSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKAPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAASNCTVNTSSIATSSVKGLTTTGNSSLNSTANTKISAVPTNMAAKKTSTPKINFVGGNKLQSTGNKTEDLKGTECVKSTPVTSVQIQEVKPDTVSEPVTPASLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKSKNKEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAETLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQMSQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF", "length": 1073, "header": "tr|I3L598-1|I3L598_PIG Isoform 1 of Zinc finger RNA-binding protein OS=Sus scrofa OX=9823 GN=ZFR PE=1 SV=2 CANONICAL=I3L598-1" }, "isoforms": [ { "isoform_ac": "I3L598-1", "url": "https://www.uniprot.org/uniprotkb/I3L598/entry#I3L598-1", "sequence": { "sequence": "MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSQQPASGVAYSHPTTVASYTVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQDSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQTAPKAGYSQGATQYTQAQQTRQVTAIKPATPSPATTTFSIYPVSSTVQPVAAAATVVPSYTQSATYSTTAVTYSGTSYSGYEAAVYSAASSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKAPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAASNCTVNTSSIATSSVKGLTTTGNSSLNSTANTKISAVPTNMAAKKTSTPKINFVGGNKLQSTGNKTEDLKGTECVKSTPVTSVQIQEVKPDTVSEPVTPASLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKSKNKEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAETLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQMSQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF", "length": 1073, "header": "tr|I3L598-1|I3L598_PIG Isoform 1 of Zinc finger RNA-binding protein OS=Sus scrofa OX=9823 GN=ZFR PE=1 SV=2 CANONICAL=I3L598-1" }, "locus": { "chromosome": "16", "start_pos": 18656224, "end_pos": 18563250, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029135.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029135.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019197.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019197.2" } ] } }, { "isoform_ac": "I3LCI4-1", "url": "https://www.uniprot.org/uniprotkb/I3L598/entry#I3LCI4-1", "sequence": { "sequence": "MIPICPVVSFTYVPSRLGEDAKMATGNYFGFTHSGAAAAAAAAQYSQQPASGVAYSHPTTVASYTVHQAPVAAHTVTAAYAPAAATVAVARPAPVAVAAAATAAAYGGYPTAHTATDYGYTQRQQEAPPPPPPATTQNYQDSYSYVRSTAPAVAYDSKQYYQQPTATAAAVAAAAQPQPSVAETYYQTGTSYSGYEAAVYSAASSYYQQQQQQQKQAAAAAAAAAATAAWTGTTFTKKAPFQNKQLKPKQPPKPPQIHYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVSCTGADAYAAHIRGAKHQKVVKLHTKLGKPIPSTEPNVVSQATSSTAVSASKPTASPSSIAASNCTVNTSSIATSSVKGLTTTGNSSLNSTANTKISAVPTNMAAKKTSTPKINFVGGNKLQSTGNKTEDLKGTECVKSTPVTSVQIQEVKPDTVSEPVTPASLAALQSDVQPVGHDYVEEVRNDEGKVIRFHCKLCECSFNDPNAKEMHLKGRRHRLQYKKKVNPDLQVEVKPSIRARKIQEEKMRKQMQKEEYWRRREEEERWRMEMRRYEEDMYWRRMEEEQHHWDDRRRMPDGGYPHGPPGPLGLLGVRPGMPPQPQGPAPLRRPDSSDDRYVMTKHATIYPTEEELQAVQKIVSITERALKLVSDSLSEHEKSKNKEGDDKKEGGKDRALKGVLRVGVLAKGLLLRGDRNVNLVLLCSEKPSKTLLSRIAETLPKQLAVISPEKYDIKCAVSEAAIILNSCVEPKMQVTITLTSPIIREENMREGDVTSGMVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFECISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMDPLPQMSQRFNIHNNRKRRRDSDGVDGFEAEGKKDKKDYDNF", "length": 1000, "header": "tr|I3LCI4-1|I3L598_PIG Computationally mapped isoform of Zinc finger RNA-binding protein OS=Sus scrofa OX=9823 GN=ZFR PE=1 SV=2 CANONICAL=I3L598-1" }, "locus": { "chromosome": "16", "start_pos": 18656224, "end_pos": 18563250, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000025090.4", "url": "https://www.ensembl.org/id/ENSSSCT00000025090.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021759.2", "url": "https://www.ensembl.org/id/ENSSSCP00000021759.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 549, "start_aa": "Thr", "end_pos": 549, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr549", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LCI4", "url": "https://www.uniprot.org/uniprotkb/I3LCI4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "I3L598", "url": "https://www.uniprot.org/uniprotkb/I3L598" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "I3L598", "url": "https://www.uniprot.org/uniprotkb/I3L598" } ], "pmid": "" }, { "name": "double-stranded RNA binding", "id": "GO:0003725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003725", "evidence": [ { "database": "UniProtKB", "id": "I3L598", "url": "https://www.uniprot.org/uniprotkb/I3L598" } ], "pmid": "" }, { "name": "single-stranded RNA binding", "id": "GO:0003727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003727", "evidence": [ { "database": "UniProtKB", "id": "I3L598", "url": "https://www.uniprot.org/uniprotkb/I3L598" } ], "pmid": "" }, { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "I3L598", "url": "https://www.uniprot.org/uniprotkb/I3L598" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L598", "url": "https://www.uniprot.org/uniprotkb/I3L598" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 367, "end_pos": 369, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 373, "end_pos": 375, "annotation": "n_glycosylation_sequon" }, { "start_pos": 453, "end_pos": 455, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 474, "end_pos": 476, "annotation": "n_glycosylation_sequon" }, { "start_pos": 478, "end_pos": 480, "annotation": "n_glycosylation_sequon" }, { "start_pos": 515, "end_pos": 517, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L598-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1073, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L598-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L598" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L598", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L598" }, { "id": "PS51703", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51703" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DZF", "eco_id": "ECO_0000259", "start_pos": 702, "end_pos": 1072, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 549 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 367, "end_pos": 369 }, { "start_pos": 372, "end_pos": 374 }, { "start_pos": 373, "end_pos": 375 }, { "start_pos": 453, "end_pos": 455 }, { "start_pos": 457, "end_pos": 459 }, { "start_pos": 474, "end_pos": 476 }, { "start_pos": 478, "end_pos": 480 }, { "start_pos": 515, "end_pos": 517 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5A3-1", "uniprot_ac": "I3L5A3", "uniprot_id": "I3L5A3_PIG", "mass": { "chemical_mass": 15393.0, "monoisotopic_mass": 15393.0 }, "refseq": {}, "gene_names": [ { "name": "IL9", "type": "recommended", "evidence": [ { "id": "I3L5A3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5A3" } ] } ], "protein_names": [ { "name": "Interleukin 9", "type": "synonym", "evidence": [ { "id": "I3L5A3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5A3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5A3", "url": "https://www.uniprot.org/uniprotkb/I3L5A3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "IL9", "url": "https://www.uniprot.org/uniprotkb/I3L5A3", "locus": { "chromosome": "2", "start_pos": 138048943, "end_pos": 138052588, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000025818", "url": "https://www.ensembl.org/id/ENSSSCG00000025818" } ] } } ], "crossref": [ { "id": "I3L5A3", "url": "https://alphafold.ebi.ac.uk/entry/I3L5A3", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000025818", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000025818", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR020447", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020447", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPSDNCP", "url": "https://omabrowser.org/oma/group/IPSDNCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR16926", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16926", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16926:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16926:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27789", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27789", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-8985947", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8985947", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L5A3", "url": "https://www.uniprot.org/uniprotkb/I3L5A3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5A3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5A3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFPAVVLASALFLCSSASQGCMTLTGIKNVEHLINNLQKHPPAKCSCSPNVTDCLCLPIPSDDCTTACFQEGLSKMSNTTAKPELSLIFSKVKKTVEALKNNKCGDFSCEQPCNRTTVGNTLIFLRSLLESFQKERMRGRV", "length": 141, "header": "tr|I3L5A3-1|I3L5A3_PIG Isoform 1 of Interleukin 9 OS=Sus scrofa OX=9823 GN=IL9 PE=4 SV=1 CANONICAL=I3L5A3-1" }, "isoforms": [ { "isoform_ac": "I3L5A3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5A3/entry#I3L5A3-1", "sequence": { "sequence": "MFPAVVLASALFLCSSASQGCMTLTGIKNVEHLINNLQKHPPAKCSCSPNVTDCLCLPIPSDDCTTACFQEGLSKMSNTTAKPELSLIFSKVKKTVEALKNNKCGDFSCEQPCNRTTVGNTLIFLRSLLESFQKERMRGRV", "length": 141, "header": "tr|I3L5A3-1|I3L5A3_PIG Isoform 1 of Interleukin 9 OS=Sus scrofa OX=9823 GN=IL9 PE=4 SV=1 CANONICAL=I3L5A3-1" }, "locus": { "chromosome": "2", "start_pos": 138052551, "end_pos": 138049042, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000027552.2", "url": "https://www.ensembl.org/id/ENSSSCT00000027552.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019202.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019202.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5A3", "url": "https://www.uniprot.org/uniprotkb/I3L5A3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-8985947", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-8985947", "resource": "Reactome", "description": "Interleukin-9 signaling" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A9J7JLG8-1", "protein_name": "Interleukin-9", "gene_name": "Il9", "tax_id": 10029, "organism": "Cricetulus griseus", "sequence": { "sequence": "MFVASILASALLFSSVGSVLNWKCNTELVIRVTSSLMDNLQGDPSSKCSCSTNVTSCLCLPIPSDDCTTPCFQEGLSQLTNATQKTRFSVSFLQVKRTVEGLKNNKCPFFSCEKPCNQTTAGNTLSFLKSLQETSQKARAKVPKRRTSR", "length": 149 }, "evidence": [ { "id": "I3L5A3", "url": "https://omabrowser.org/oma/group/I3L5A3/", "database": "OMA" } ], "glygen_name": "Hamster", "common_name": "Chinese hamster" }, { "uniprot_canonical_ac": "D4A8I9-1", "protein_name": "Interleukin 9", "gene_name": "Il9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MFVTYVLASALLFGSVLGQRCSTSWGIQHTSYLIENLKDDPSSKCSCSANVTSCLCLPIPSDDCTTPCFQEGMSQVTNATQQSKFSPFFFRVKRIVETLKSNKCQFFSCEKPCNQTTAGNTVSFLKSLLKTFQKTEVQVQRSRA", "length": 144 }, "evidence": [ { "id": "I3L5A3", "url": "https://omabrowser.org/oma/group/I3L5A3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BF10-1", "protein_name": "Interleukin 9", "gene_name": "IL9", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MLLAVVLASALFLCSSASQGCFTLTGIRNAVYLIDNLQKDTSSKCSCSTNATDCLCLPISSGDCSTACFQEGLSQMSSSTVSTRFHLIVNQLKKIVVTLKSNKCGSFACEQPCNRTTTGNTLTFLKALLESFQNDRMRGKA", "length": 141 }, "evidence": [ { "id": "I3L5A3", "url": "https://omabrowser.org/oma/group/I3L5A3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P15247-1", "protein_name": "Interleukin-9", "gene_name": "Il9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MLVTYILASVLLFSSVLGQRCSTTWGIRDTNYLIENLKDDPPSKCSCSGNVTSCLCLSVPTDDCTTPCYREGLLQLTNATQKSRLLPVFHRVKRIVEVLKNITCPSFSCEKPCNQTMAGNTLSFLKSLLGTFQKTEMQRQKSRP", "length": 144 }, "evidence": [ { "id": "I3L5A3", "url": "https://omabrowser.org/oma/group/I3L5A3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "P15248-1", "protein_name": "Interleukin-9", "gene_name": "IL9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MLLAMVLTSALLLCSVAGQGCPTLAGILDINFLINKMQEDPASKCHCSANVTSCLCLGIPSDNCTRPCFSERLSQMTNTTMQTRYPLIFSRVKKSVEVLKNNKCPYFSCEQPCNQTTAGNALTFLKSLLEIFQKEKMRGMRGKI", "length": 144 }, "evidence": [ { "id": "I3L5A3", "url": "https://omabrowser.org/oma/group/I3L5A3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "interleukin-9 receptor binding", "id": "GO:0005140", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005140", "evidence": [ { "database": "UniProtKB", "id": "I3L5A3", "url": "https://www.uniprot.org/uniprotkb/I3L5A3" } ], "pmid": "" }, { "name": "cytokine activity", "id": "GO:0005125", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005125", "evidence": [ { "database": "UniProtKB", "id": "I3L5A3", "url": "https://www.uniprot.org/uniprotkb/I3L5A3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of interleukin-5 production", "id": "GO:0032754", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032754", "evidence": [ { "database": "UniProtKB", "id": "I3L5A3", "url": "https://www.uniprot.org/uniprotkb/I3L5A3" } ], "pmid": "" }, { "name": "interleukin-9-mediated signaling pathway", "id": "GO:0038113", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0038113", "evidence": [ { "database": "UniProtKB", "id": "I3L5A3", "url": "https://www.uniprot.org/uniprotkb/I3L5A3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "I3L5A3", "url": "https://www.uniprot.org/uniprotkb/I3L5A3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 50, "end_pos": 52, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5A3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 141, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5A3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5A3" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 50, "end_pos": 52 }, { "start_pos": 78, "end_pos": 80 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5C4-1", "uniprot_ac": "I3L5C4", "uniprot_id": "I3L5C4_PIG", "mass": { "chemical_mass": 57813.0, "monoisotopic_mass": 57813.0 }, "refseq": {}, "gene_names": [ { "name": "KRT74", "type": "recommended", "evidence": [ { "id": "I3L5C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" } ] } ], "protein_names": [ { "name": "Keratin 74", "type": "synonym", "evidence": [ { "id": "I3L5C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5C4/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5C4", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "KRT74", "url": "https://www.uniprot.org/uniprotkb/I3L5C4", "locus": { "chromosome": "5", "start_pos": 17914912, "end_pos": 17924004, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000028334", "url": "https://www.ensembl.org/id/ENSSSCG00000028334" } ] } } ], "crossref": [ { "id": "I3L5C4", "url": "https://alphafold.ebi.ac.uk/entry/I3L5C4", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000028334", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000028334", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR003054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032444", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032444", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IQRIRCD", "url": "https://omabrowser.org/oma/group/IQRIRCD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16208", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16208", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L5C4", "url": "https://www.uniprot.org/uniprotkb/I3L5C4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5C4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5C4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRQLNIKSGGDKGGFSGHSAAVLRKALGSAASYRAAGKGAGAGFGSRSLHTLGRNQCVCFNAASSGVWTGGHSFGLGSGYAGGRASGFAGSMFGSMALGPMYPSMCPPGGIHQVTVNKSLLAPLNVELDPEIQKVRTQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWQLLQQLDLDNCKKNLEPILEGYISTLQKQLEALSGDRMRLDSELKIMQDLVEDYKKRYEVEINRRTAAENEFVVLKKDADAAYTVKVELQAKVDSLDKDIKFLKCLYDAEIAQVQTHASETSVILSMDNNRDLDLDSIIAEVRAQYEDIALKSKAEAEALYQSKIQELQLAAGQHGDDLKHTRNEISELNRLIQRIRCEIANVKKQCSNLETAIADAEQRGENALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLEGEECRMSGENPSSVSISVISSSASGYGYHPGSLASSDPGASTVASSSGSTRSGQTRAKVTQAGDPKDPQSKSAPVSGPARKATR", "length": 531, "header": "tr|I3L5C4-1|I3L5C4_PIG Isoform 1 of Keratin 74 OS=Sus scrofa OX=9823 GN=KRT74 PE=3 SV=1 CANONICAL=I3L5C4-1" }, "isoforms": [ { "isoform_ac": "I3L5C4-1", "url": "https://www.uniprot.org/uniprotkb/I3L5C4/entry#I3L5C4-1", "sequence": { "sequence": "MSRQLNIKSGGDKGGFSGHSAAVLRKALGSAASYRAAGKGAGAGFGSRSLHTLGRNQCVCFNAASSGVWTGGHSFGLGSGYAGGRASGFAGSMFGSMALGPMYPSMCPPGGIHQVTVNKSLLAPLNVELDPEIQKVRTQEREQIKALNNKFASFIDKVRFLEQQNQVLETKWQLLQQLDLDNCKKNLEPILEGYISTLQKQLEALSGDRMRLDSELKIMQDLVEDYKKRYEVEINRRTAAENEFVVLKKDADAAYTVKVELQAKVDSLDKDIKFLKCLYDAEIAQVQTHASETSVILSMDNNRDLDLDSIIAEVRAQYEDIALKSKAEAEALYQSKIQELQLAAGQHGDDLKHTRNEISELNRLIQRIRCEIANVKKQCSNLETAIADAEQRGENALKDARAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLEGEECRMSGENPSSVSISVISSSASGYGYHPGSLASSDPGASTVASSSGSTRSGQTRAKVTQAGDPKDPQSKSAPVSGPARKATR", "length": 531, "header": "tr|I3L5C4-1|I3L5C4_PIG Isoform 1 of Keratin 74 OS=Sus scrofa OX=9823 GN=KRT74 PE=3 SV=1 CANONICAL=I3L5C4-1" }, "locus": { "chromosome": "5", "start_pos": 17923942, "end_pos": 17915902, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000024415.2", "url": "https://www.ensembl.org/id/ENSSSCT00000024415.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019223.1", "url": "https://www.ensembl.org/id/ENSSSCP00000019223.1" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5C4", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [ { "uniprot_canonical_ac": "A3KN27-1", "protein_name": "Keratin, type II cytoskeletal 74", "gene_name": "KRT74", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRQLNIKSGGDKGGFSGHSAVVLRKVGGSAASYRAPSKGAGAAFGSRSLYSLCRGDLCVPLKVAGSSVRTGGYNFRLGSGYGGVRASSFAGSMFGSVVLGPVCPSMCPPGGIHQVTVNKSLLAPLNVELDPEIQKVRAQEREQIMALNNKFASFIDKVRFLEQQNQVLGTKWELLQQMDLNNCRKNLEPILEGYIGNLRKQLEMLSGDRLRLDSELKGMRDLVEDYKKRYEVEINQRTAAENDFVVLKKDADAAYTVKVELQAKVDSLDKDIKFLKCLYDAEVAQIQTHTSETSVILSMDNNRYLDLDSIIAEVRAQYEDIALKSKAEAEALYQSKIQELQLAAGRHGDDLKHTKNEMSELNRLIQRIRCEIANVKKQAFSVCSKPAPCPLQCANLETAIADAEQRGDSALKDARAKLDELEAAMHQAKEELARMLREYQELMSLKLALDMEIATYSKLLEGEECWMSGENPSSVSISVISSSASSFGYHPGSSASTDLGASTMASTGTSSSSSTQSGQTRAKGARVGDPKDSQDKSTPVSSRARKAAR", "length": 550 }, "evidence": [ { "id": "I3L5C4", "url": "https://omabrowser.org/oma/group/I3L5C4/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q7RTS7-1", "protein_name": "Keratin, type II cytoskeletal 74", "gene_name": "KRT74", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRQLNIKSSGDKGNFSVHSAVVPRKAVGSLASYCAAGRGAGAGFGSRSLYSLGGNRRISFNVAGGGVRAGGYGFRPGSGYGGGRASGFAGSMFGSVALGPACLSVCPPGGIHQVTVNKSLLAPLNVELDPEIQKVRAQEREQIKVLNDKFASFIDKVRFLEQQNQVLETKWELLQQLDLNNCKKNLEPILEGYISNLRKQLETLSGDRVRLDSELRSMRDLVEDYKKRYEVEINRRTTAENEFVVLKKDADAAYAVKVELQAKVDSLDKEIKFLKCLYDAEIAQIQTHASETSVILSMDNNRDLDLDSIIAEVRMHYEEIALKSKAEAEALYQTKIQELQLAASRHGDDLKHTRSEMVELNRLIQRIRCEIGNVKKQRASLETAIADAEQRGDNALKDAQAKLDELEGALHQAKEELARMLREYQELMSLKLALDMEIATYRKLLEGEECRMSGENPSSVSISVISSSSYSYHHPSSAGVDLGASAVAGSSGSTQSGQTKTTEARGGDLKDTQGKSTPASIPARKATR", "length": 529 }, "evidence": [ { "id": "I3L5C4", "url": "https://omabrowser.org/oma/group/I3L5C4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "keratin filament binding", "id": "GO:1990254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990254", "evidence": [ { "database": "UniProtKB", "id": "I3L5C4", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" } ], "pmid": "" }, { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "I3L5C4", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L5C4", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "I3L5C4", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "keratinization", "id": "GO:0031424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031424", "evidence": [ { "database": "UniProtKB", "id": "I3L5C4", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "I3L5C4", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 118, "end_pos": 120, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5C4-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 531, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5C4-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5C4" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5C4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5C4" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 140, "end_pos": 453, "start_aa": "Glu", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 118, "end_pos": 120 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5E9-1", "uniprot_ac": "I3L5E9", "uniprot_id": "I3L5E9_PIG", "mass": { "chemical_mass": 45200.0, "monoisotopic_mass": 45200.0 }, "refseq": {}, "gene_names": [ { "name": "SELENOI", "type": "recommended", "evidence": [ { "id": "I3L5E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5E9" } ] } ], "protein_names": [ { "name": "Ethanolaminephosphotransferase 1", "type": "recommended", "evidence": [ { "id": "I3L5E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5E9/entry#names_and_taxonomy" } ] }, { "name": "2.7.8.1", "type": "synonym", "evidence": [ { "id": "I3L5E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5E9/entry#names_and_taxonomy" } ] }, { "name": "Selenoprotein I", "type": "synonym", "evidence": [ { "id": "I3L5E9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5E9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Ethanolaminephosphotransferase that catalyzes the transfer of phosphoethanolamine (PE) from CDP-ethanolamine to lipid acceptors, the final step in the synthesis of PE via the 'Kennedy' pathway. PE is the second most abundant phospholipid of membranes in mammals and is involved in various membrane-related cellular processes. The enzyme is critical for the synthesis of several PE species and also catalyzes the synthesis of plasmanyl-PE, a lipid required for proper myelination and neurodevelopment, from 1-alkyl-2-acylglycerol.", "evidence": [ { "database": "UniProtKB", "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9#function" }, { "database": "UniProtKB", "id": "ARBA00059224", "url": "https://www.uniprot.org/uniprotkb/ARBA00059224#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "SELENOI", "url": "https://www.uniprot.org/uniprotkb/I3L5E9", "locus": { "chromosome": "3", "start_pos": 112628744, "end_pos": 112671078, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030643", "url": "https://www.ensembl.org/id/ENSSSCG00000030643" } ] } } ], "crossref": [ { "id": "I3L5E9", "url": "https://alphafold.ebi.ac.uk/entry/I3L5E9", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000030643", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030643", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR000462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR10414", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10414", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10414:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10414:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01066", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01066", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-1483213", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483213", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "32943", "url": "https://www.rhea-db.org/rhea/32943", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "36187", "url": "https://www.rhea-db.org/rhea/36187", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5E9-1", "url": "https://www.uniprot.org/uniprotkb/I3L5E9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTVVKIFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFIAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSSGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDVSQVTISIVYIVTAVVGVEAWYEPFLFNFLYRDLFTTMIIGCALCVTLPMSLLNFFRSYKNNTLKHNSVYEAMVPFFSPCLLFVLSTAWILQSPSDILELHPRVFYFMVGTAFANITCQLIVCQMSSTRCPTLNWLLAPLFLVVMVVNVGVTSYVESIFLFTLTTAFTLAHIHYGVRVVKQLSSHFQIYPFSLRKPNSDCLGMEEKNIGL", "length": 397, "header": "tr|I3L5E9-1|I3L5E9_PIG Isoform 1 of Ethanolaminephosphotransferase 1 OS=Sus scrofa OX=9823 GN=SELENOI PE=1 SV=6 CANONICAL=I3L5E9-1" }, "isoforms": [ { "isoform_ac": "I3L5E9-1", "url": "https://www.uniprot.org/uniprotkb/I3L5E9/entry#I3L5E9-1", "sequence": { "sequence": "MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTVVKIFPTWLAPNLITFSGFLLVVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFIAYTLDGVDGKQARRTNSSTPLGELFDHGLDSWSCVYFVVTVYSIFGRGSSGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDVSQVTISIVYIVTAVVGVEAWYEPFLFNFLYRDLFTTMIIGCALCVTLPMSLLNFFRSYKNNTLKHNSVYEAMVPFFSPCLLFVLSTAWILQSPSDILELHPRVFYFMVGTAFANITCQLIVCQMSSTRCPTLNWLLAPLFLVVMVVNVGVTSYVESIFLFTLTTAFTLAHIHYGVRVVKQLSSHFQIYPFSLRKPNSDCLGMEEKNIGL", "length": 397, "header": "tr|I3L5E9-1|I3L5E9_PIG Isoform 1 of Ethanolaminephosphotransferase 1 OS=Sus scrofa OX=9823 GN=SELENOI PE=1 SV=6 CANONICAL=I3L5E9-1" }, "locus": { "chromosome": "3", "start_pos": 112670998, "end_pos": 112632988, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000023702.4", "url": "https://www.ensembl.org/id/ENSSSCT00000023702.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019248.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019248.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-1483213", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1483213", "resource": "Reactome", "description": "Synthesis of PE" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9" } ], "pmid": "" }, { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "ether lipid biosynthetic process", "id": "GO:0008611", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008611", "evidence": [ { "database": "UniProtKB", "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9" } ], "pmid": "" }, { "name": "myelination", "id": "GO:0042552", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042552", "evidence": [ { "database": "UniProtKB", "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9" } ], "pmid": "" }, { "name": "phosphatidylethanolamine biosynthetic process", "id": "GO:0006646", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006646", "evidence": [ { "database": "UniProtKB", "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ethanolaminephosphotransferase activity", "id": "GO:0004307", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004307", "evidence": [ { "database": "UniProtKB", "id": "I3L5E9", "url": "https://www.uniprot.org/uniprotkb/I3L5E9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 248, "end_pos": 250, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "32943", "name": "", "equation": "CDP-ethanolamine + a 1,2-diacyl-sn-glycerol = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "32943", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/32943" } ] }, { "id": "36187", "name": "", "equation": "1-O-alkyl-2-acyl-sn-glycerol + CDP-ethanolamine = a 1-O-alkyl-2-acyl-sn-glycero-3-phosphoethanolamine + CMP + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "36187", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/36187" } ] }, { "id": "R-SSC-1482962", "name": "CDP-ETA and DAG are converted to PE by CEPT1/EPT1", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol, endoplasmic reticulum membrane", "input_participant_list": [ "R-ALL-1500603" ], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-1482962", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-1482962" } ] } ], "reaction_participants": [ { "participant_id": "R-ALL-1500603", "participant_name": "CDP-ETA [cytosol]", "crossref": [ { "id": "57876", "database": "ChEBI", "url": "" }, { "id": "ZINC000008216134", "database": "ZINC", "url": "" } ] } ], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5E9-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 397, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5E9-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5E9" } ], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 115, "end_pos": 117 }, { "start_pos": 248, "end_pos": 250 }, { "start_pos": 302, "end_pos": 304 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5H5-1", "uniprot_ac": "I3L5H5", "uniprot_id": "I3L5H5_PIG", "mass": { "chemical_mass": 30644.0, "monoisotopic_mass": 30644.0 }, "refseq": { "ac": "XP_003360417", "name": "homeobox protein CDX-4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360417" }, "gene_names": [ { "name": "CDX4", "type": "recommended", "evidence": [ { "id": "I3L5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ] }, { "name": "CDX4", "type": "synonym", "evidence": [ { "id": "XP_003360417", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360417" } ] } ], "protein_names": [ { "name": "Caudal type homeobox 4", "type": "synonym", "evidence": [ { "id": "I3L5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5H5/entry#names_and_taxonomy" } ] }, { "name": "homeobox protein CDX-4", "type": "synonym", "evidence": [ { "id": "XP_003360417", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360417" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CDX4", "url": "https://www.uniprot.org/uniprotkb/I3L5H5", "locus": { "chromosome": "X", "start_pos": 59100431, "end_pos": 59091946, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021225", "url": "https://www.ensembl.org/id/ENSSSCG00000021225" } ] } } ], "crossref": [ { "id": "I3L5H5", "url": "https://alphafold.ebi.ac.uk/entry/I3L5H5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000021225", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000021225", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100623433", "url": "https://www.ncbi.nlm.nih.gov/gene/100623433", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006820", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006820", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020479", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020479", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623433", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623433", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YPHMPGM", "url": "https://omabrowser.org/oma/group/YPHMPGM/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L5H5", "url": "https://www.orthodb.org/?gene=I3L5H5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24332", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24332", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24332:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24332:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04731", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04731", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003360417", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003360417", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5H5-1", "url": "https://www.uniprot.org/uniprotkb/I3L5H5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYRSCLLEKEAAMYSGTLRSPAGGGTAEAGGTGSCGSPLQASNFATAPAYAHYMGYPHMPATDLHGPSLGAWGSPYSPPREDWNVYPGPSSTMGTVPMNDMTSSPAAFGSPEYSNPAPAGGGNSCSGLTGPAGGSLFPVDACTADASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSGSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE", "length": 284, "header": "tr|I3L5H5-1|I3L5H5_PIG Isoform 1 of Caudal type homeobox 4 OS=Sus scrofa OX=9823 GN=CDX4 PE=3 SV=2 CANONICAL=I3L5H5-1" }, "isoforms": [ { "isoform_ac": "I3L5H5-1", "url": "https://www.uniprot.org/uniprotkb/I3L5H5/entry#I3L5H5-1", "sequence": { "sequence": "MYRSCLLEKEAAMYSGTLRSPAGGGTAEAGGTGSCGSPLQASNFATAPAYAHYMGYPHMPATDLHGPSLGAWGSPYSPPREDWNVYPGPSSTMGTVPMNDMTSSPAAFGSPEYSNPAPAGGGNSCSGLTGPAGGSLFPVDACTADASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSGSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE", "length": 284, "header": "tr|I3L5H5-1|I3L5H5_PIG Isoform 1 of Caudal type homeobox 4 OS=Sus scrofa OX=9823 GN=CDX4 PE=3 SV=2 CANONICAL=I3L5H5-1" }, "locus": { "chromosome": "X", "start_pos": 59099862, "end_pos": 59091946, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030959.4", "url": "https://www.ensembl.org/id/ENSSSCT00000030959.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019274.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019274.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623433", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623433", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZF67-1", "protein_name": "Caudal type homeo box 4", "gene_name": "Cdx4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MYGSCLLEKEAGMYPGTLRNPGGGSTAGVGTSGGSGSPLPASNFTAAPVYPHYMGYPHMSNMDPHGPSLGAWSSPYSPPREDWSTYPGPSSTMGTVPMNDMTSSSPAFGSPDYSTLGPTGGAGGASNGGSLPDAASESLVSIDSGTSGGATSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSGSISPGELPNAFFTTPSAVRGFQPIEIQQVIISE", "length": 288 }, "evidence": [ { "id": "I3L5H5", "url": "https://omabrowser.org/oma/group/I3L5H5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "O14627-1", "protein_name": "Homeobox protein CDX-4", "gene_name": "CDX4", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MYGSCLLEKEAGMYPGTLMSPGGDGTAGTGGTGGGGSPMPASNFAAAPAFSHYMGYPHMPSMDPHWPSLGVWGSPYSPPREDWSVYPGPSSTMGTVPVNDVTSSPAAFCSTDYSNLGPVGGGTSGSSLPGQAGGSLVPTDAGAAKASSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIQRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENSGGSVQSDSDSISPGELPNTFFTTPSAVRGFQPIEIQQVIVSE", "length": 284 }, "evidence": [ { "id": "I3L5H5", "url": "https://omabrowser.org/oma/group/I3L5H5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q07424-1", "protein_name": "Homeobox protein CDX-4", "gene_name": "Cdx4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MYGSCLLEKEAGMYPGTLRSPGGSSTAGVGTSGGSGSPLPASNFTAAPVYPHYVGYPHMSNMDPHGPSLGAWSSPYSPPREDWSTYPGPPSTMGTVPMNDMTSPVFGSPDYSTLGPTSGASNGGSLPDAASESLVSLDSGTSGATSPSRSRHSPYAWMRKTVQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERKMIKKKISQFENTGGSVQSDSGSISPGELPNAFFTTPSAVRGFQPIEIQQVIVSE", "length": 282 }, "evidence": [ { "id": "I3L5H5", "url": "https://omabrowser.org/oma/group/I3L5H5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" }, { "name": "digestive tract development", "id": "GO:0048565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048565", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" }, { "name": "anterior/posterior axis specification", "id": "GO:0009948", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009948", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" }, { "name": "embryonic pattern specification", "id": "GO:0009880", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009880", "evidence": [ { "database": "UniProtKB", "id": "I3L5H5", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5H5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 284, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5H5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5H5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5H5" }, { "id": "PS50071", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50071" }, { "id": "PRU00108", "database": "PROSITE", "url": "https://prosite.expasy.org/PRU00108" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Homeobox", "eco_id": "ECO_0000259", "start_pos": 171, "end_pos": 231, "start_aa": "Arg", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5L0-1", "uniprot_ac": "I3L5L0", "uniprot_id": "I3L5L0_PIG", "mass": { "chemical_mass": 48287.0, "monoisotopic_mass": 48287.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100737977", "type": "recommended", "evidence": [ { "id": "I3L5L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ] } ], "protein_names": [ { "name": "Tumor necrosis factor receptor superfamily member 10A", "type": "recommended", "evidence": [ { "id": "I3L5L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5L0/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100737977", "url": "https://www.uniprot.org/uniprotkb/I3L5L0", "locus": {} } ], "crossref": [ { "id": "I3L5L0", "url": "https://alphafold.ebi.ac.uk/entry/I3L5L0", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000009633", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000009633", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd08315", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08315", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10580", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10580", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000488", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000488", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001368", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001368", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052491", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052491", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR46330", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46330", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46330:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46330:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00020", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00020", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00531", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00531", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-202733", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-3371378", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371378", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-69416", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69416", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-75158", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75158", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5L0-1", "url": "https://www.uniprot.org/uniprotkb/I3L5L0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALPAVCPHRDRTRNWGPSAPTASGAPAGRAASPQPSRQDLRAPIVVVLVLSVTAASGMPTGQGRFHQQMAAPEAGSLGRWKCPPGFHVEDASGECVRCTDGVDYTSHPNTLFSCLRCTVCKSGEEEKTPCTATADTGCECKPGTFREENSPEFCQKCHTRCPDGMVMATPCTPSSDLKCVHQESGTRASGEALDPGEPVTTNLQPPTASSPSSSNSQLVAKIAASCLVVLFLVVSACLIYKYKVQGCGLHRKFMDKVLFWRSHPSRRPEALDNARNNTLSNRDGLSSPVSDQEVEDPEQVEPTGVQSSGEAEHLLEPAAAEGSRVRRRLLVPADGGDPTECLRQFFDDFSNIVPCDCWDKLMRKMDLTQNDILQSRDRARNTGDALYEMLETWVRRKGREASVNDLLDALEALGQRYAKEKIEDTLVGSRKFVFKEGEAGAAVS", "length": 445, "header": "tr|I3L5L0-1|I3L5L0_PIG Isoform 1 of Tumor necrosis factor receptor superfamily member 10A OS=Sus scrofa OX=9823 GN=LOC100737977 PE=4 SV=2 CANONICAL=I3L5L0-1" }, "isoforms": [ { "isoform_ac": "I3L5L0-1", "url": "https://www.uniprot.org/uniprotkb/I3L5L0/entry#I3L5L0-1", "sequence": { "sequence": "MALPAVCPHRDRTRNWGPSAPTASGAPAGRAASPQPSRQDLRAPIVVVLVLSVTAASGMPTGQGRFHQQMAAPEAGSLGRWKCPPGFHVEDASGECVRCTDGVDYTSHPNTLFSCLRCTVCKSGEEEKTPCTATADTGCECKPGTFREENSPEFCQKCHTRCPDGMVMATPCTPSSDLKCVHQESGTRASGEALDPGEPVTTNLQPPTASSPSSSNSQLVAKIAASCLVVLFLVVSACLIYKYKVQGCGLHRKFMDKVLFWRSHPSRRPEALDNARNNTLSNRDGLSSPVSDQEVEDPEQVEPTGVQSSGEAEHLLEPAAAEGSRVRRRLLVPADGGDPTECLRQFFDDFSNIVPCDCWDKLMRKMDLTQNDILQSRDRARNTGDALYEMLETWVRRKGREASVNDLLDALEALGQRYAKEKIEDTLVGSRKFVFKEGEAGAAVS", "length": 445, "header": "tr|I3L5L0-1|I3L5L0_PIG Isoform 1 of Tumor necrosis factor receptor superfamily member 10A OS=Sus scrofa OX=9823 GN=LOC100737977 PE=4 SV=2 CANONICAL=I3L5L0-1" }, "locus": { "chromosome": "14", "start_pos": 7358614, "end_pos": 7346642, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000029798.4", "url": "https://www.ensembl.org/id/ENSSSCT00000029798.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019309.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019309.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-202733", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-202733", "resource": "Reactome", "description": "Cell surface interactions at the vascular wall" }, { "id": "R-SSC-3371378", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-3371378", "resource": "Reactome", "description": "Regulation by c-FLIP" }, { "id": "R-SSC-69416", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-69416", "resource": "Reactome", "description": "Dimerization of procaspase-8" }, { "id": "R-SSC-75158", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-75158", "resource": "Reactome", "description": "TRAIL signaling" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ], "pmid": "" }, { "name": "cell surface", "id": "GO:0009986", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009986", "evidence": [ { "database": "UniProtKB", "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ], "pmid": "" }, { "name": "cellular response to mechanical stimulus", "id": "GO:0071260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071260", "evidence": [ { "database": "UniProtKB", "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ], "pmid": "" }, { "name": "TRAIL-activated apoptotic signaling pathway", "id": "GO:0036462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036462", "evidence": [ { "database": "UniProtKB", "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "TRAIL binding", "id": "GO:0045569", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045569", "evidence": [ { "database": "UniProtKB", "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ], "pmid": "" }, { "name": "death receptor activity", "id": "GO:0005035", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005035", "evidence": [ { "database": "UniProtKB", "id": "I3L5L0", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 277, "end_pos": 279, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5L0-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 445, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5L0-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5L0" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" }, { "id": "PS50017", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50017" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Death", "eco_id": "ECO_0000259", "start_pos": 359, "end_pos": 427, "start_aa": "Trp", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L5L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5L0" }, { "id": "PS50050", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50050" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TNFR-Cys", "eco_id": "ECO_0000259", "start_pos": 98, "end_pos": 139, "start_aa": "Arg", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 277, "end_pos": 279 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5M3-1", "uniprot_ac": "I3L5M3", "uniprot_id": "I3L5M3_PIG", "mass": { "chemical_mass": 38278.0, "monoisotopic_mass": 38278.0 }, "refseq": {}, "gene_names": [ { "name": "LOC100153494", "type": "recommended", "evidence": [ { "id": "I3L5M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5M3" } ] } ], "protein_names": [ { "name": "Olfactory receptor", "type": "recommended", "evidence": [ { "id": "I3L5M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5M3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "Putative odorant or sperm cell receptor.", "evidence": [ { "database": "UniProtKB", "id": "I3L5M3", "url": "https://www.uniprot.org/uniprotkb/I3L5M3#function" }, { "database": "UniProtKB", "id": "ARBA00003929", "url": "https://www.uniprot.org/uniprotkb/ARBA00003929#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5M3", "url": "https://www.uniprot.org/uniprotkb/I3L5M3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LOC100153494", "url": "https://www.uniprot.org/uniprotkb/I3L5M3", "locus": {} } ], "crossref": [ { "id": "I3L5M3", "url": "https://alphafold.ebi.ac.uk/entry/I3L5M3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15913", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15913", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050939", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR24242", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24242", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24242:SF364", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24242:SF364", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "I3L5M3", "url": "https://www.uniprot.org/uniprotkb/I3L5M3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5M3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5M3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VVSQEGLNTTLGPHMPVHTHLTFADPFTAPRHMNISNTPRNSSTITGFILLGFPCSRHGQILLFLLFAGVYLLTLMGNGSIICAVRWDQRLHTPMYILLTNFSFLEISYVTSTVPNMLANLLSDNKVISFSGCFLQFYFFFSLGSTECFFLAIMAFDRYLAICRPLRYPTLMTARLCTNLVVSCWVLGFLWFLIPIIIVSQMSFCGSRIIDHFLCDPSPLLALTCKKAPVIGLVFSTLSPVPMVILFILIMVSYALVLRVVLKVPSAAGRRKAFSTCGSHLAVASLFYGSVLVMYGSPNPEHDAQTQKIVTLFYSVVTPLLNPVIYSLRNKDMKKALQKFIKL", "length": 343, "header": "tr|I3L5M3-1|I3L5M3_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100153494 PE=3 SV=3 CANONICAL=I3L5M3-1" }, "isoforms": [ { "isoform_ac": "I3L5M3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5M3/entry#I3L5M3-1", "sequence": { "sequence": "VVSQEGLNTTLGPHMPVHTHLTFADPFTAPRHMNISNTPRNSSTITGFILLGFPCSRHGQILLFLLFAGVYLLTLMGNGSIICAVRWDQRLHTPMYILLTNFSFLEISYVTSTVPNMLANLLSDNKVISFSGCFLQFYFFFSLGSTECFFLAIMAFDRYLAICRPLRYPTLMTARLCTNLVVSCWVLGFLWFLIPIIIVSQMSFCGSRIIDHFLCDPSPLLALTCKKAPVIGLVFSTLSPVPMVILFILIMVSYALVLRVVLKVPSAAGRRKAFSTCGSHLAVASLFYGSVLVMYGSPNPEHDAQTQKIVTLFYSVVTPLLNPVIYSLRNKDMKKALQKFIKL", "length": 343, "header": "tr|I3L5M3-1|I3L5M3_PIG Isoform 1 of Olfactory receptor OS=Sus scrofa OX=9823 GN=LOC100153494 PE=3 SV=3 CANONICAL=I3L5M3-1" }, "locus": { "chromosome": "AEMK02000661.1", "start_pos": 462061, "end_pos": 461033, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032485.5", "url": "https://www.ensembl.org/id/ENSSSCT00000032485.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019322.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019322.3" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5M3", "url": "https://www.uniprot.org/uniprotkb/I3L5M3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "I3L5M3", "url": "https://www.uniprot.org/uniprotkb/I3L5M3" } ], "pmid": "" }, { "name": "olfactory receptor activity", "id": "GO:0004984", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004984", "evidence": [ { "database": "UniProtKB", "id": "I3L5M3", "url": "https://www.uniprot.org/uniprotkb/I3L5M3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L5M3", "url": "https://www.uniprot.org/uniprotkb/I3L5M3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" }, { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" }, { "start_pos": 8, "end_pos": 10, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5M3-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 343, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5M3-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5M3" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5M3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5M3" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 77, "end_pos": 326, "start_aa": "Gly", "end_aa": "Tyr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 34, "end_pos": 36 }, { "start_pos": 41, "end_pos": 43 }, { "start_pos": 78, "end_pos": 80 }, { "start_pos": 8, "end_pos": 10 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5M6-1", "uniprot_ac": "I3L5M6", "uniprot_id": "I3L5M6_PIG", "mass": { "chemical_mass": 40498.0, "monoisotopic_mass": 40498.0 }, "refseq": {}, "gene_names": [ { "name": "TRIM63", "type": "recommended", "evidence": [ { "id": "I3L5M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ] } ], "protein_names": [ { "name": "RING-type E3 ubiquitin transferase", "type": "recommended", "evidence": [ { "id": "I3L5M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5M6/entry#names_and_taxonomy" } ] }, { "name": "2.3.2.27", "type": "synonym", "evidence": [ { "id": "I3L5M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5M6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "TRIM63", "url": "https://www.uniprot.org/uniprotkb/I3L5M6", "locus": { "chromosome": "6", "start_pos": 83492633, "end_pos": 83507502, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000027684", "url": "https://www.ensembl.org/id/ENSSSCG00000027684" } ] } } ], "crossref": [ { "id": "I3L5M6", "url": "https://alphafold.ebi.ac.uk/entry/I3L5M6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000027684", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000027684", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd16759", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16759", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd19831", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd19831", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000315", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000315", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003649", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003649", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042667", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042667", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050617", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050617", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "NQLEESC", "url": "https://omabrowser.org/oma/group/NQLEESC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24099:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24099:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00643", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00643", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-983168", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5M6-1", "url": "https://www.uniprot.org/uniprotkb/I3L5M6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDYKSSLIQDGNPMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTSRSGSVSMSGGRFRCPSCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGAHKACEVAPLQSVFQGQKTELSNCISMLVAGNDRMQTIITQLEDSCRVTKDNSHQVKEELSQKFDVLYAILDEKKSELLQRITREQEEKLSFLEGLIQQYREQLDKSTKLVETAIQSLDEPGGAIFLLSAKQLIRSIVEASKGCQLGKTEQGFENMDYFTLNLEHIADTLRAIDFGTDEEEEEFIEEEEEDQEEEEATEGKEEAHQ", "length": 355, "header": "tr|I3L5M6-1|I3L5M6_PIG Isoform 1 of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=TRIM63 PE=4 SV=4 CANONICAL=I3L5M6-1" }, "isoforms": [ { "isoform_ac": "I3L5M6-1", "url": "https://www.uniprot.org/uniprotkb/I3L5M6/entry#I3L5M6-1", "sequence": { "sequence": "MDYKSSLIQDGNPMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTSRSGSVSMSGGRFRCPSCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGAHKACEVAPLQSVFQGQKTELSNCISMLVAGNDRMQTIITQLEDSCRVTKDNSHQVKEELSQKFDVLYAILDEKKSELLQRITREQEEKLSFLEGLIQQYREQLDKSTKLVETAIQSLDEPGGAIFLLSAKQLIRSIVEASKGCQLGKTEQGFENMDYFTLNLEHIADTLRAIDFGTDEEEEEFIEEEEEDQEEEEATEGKEEAHQ", "length": 355, "header": "tr|I3L5M6-1|I3L5M6_PIG Isoform 1 of RING-type E3 ubiquitin transferase OS=Sus scrofa OX=9823 GN=TRIM63 PE=4 SV=4 CANONICAL=I3L5M6-1" }, "locus": { "chromosome": "6", "start_pos": 83507373, "end_pos": 83493208, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028044.4", "url": "https://www.ensembl.org/id/ENSSSCT00000028044.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019325.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019325.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "R-SSC-983168", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983168", "resource": "Reactome", "description": "Antigen processing: Ubiquitination & Proteasome degradation" } ], "orthologs": [ { "uniprot_canonical_ac": "F6R269-1", "protein_name": "Tripartite motif containing 63", "gene_name": "TRIM63", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDYKSSLIQDGNPMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTGRVGSAAMSGGRFRCPSCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGAHKACEVAPLQSVFQGQKTELSNCISMLVAGNDRVQTIITQLEDSCRVTKENSHQVKEELSQKFDTLYAILDEKKSELLQRITREQEEKLGFLEALIQQYREQLDKSTKLVETAIQSLDEPGGAIFLLSAKQLIRSIVEASKGCQLGKIEQGFENMDYFTLDLEHVADTLRTIDFGTDEEEEEFIQEEEDHEEEESTEGKEEGHQ", "length": 354 }, "evidence": [ { "id": "I3L5M6", "url": "https://omabrowser.org/oma/group/I3L5M6/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q38HM4-1", "protein_name": "E3 ubiquitin-protein ligase TRIM63", "gene_name": "Trim63", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDYKSGLIPDGNAMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFRCPSCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYCLTCEVPTCSLCKVFGAHQACEVAPLQSIFQGQKTELSNCISMLVAGNDRVQTIISQLVDSCRVTKENSHQVKEELSQKFDTLYAILDEKKSELLQRITQEQEEKLGFIEALILQYREQLEKSTKLVETAIQSLDEPGGATFLSSAKQLIKSNVEASKGCQLGKTEQGFENMDYFTLDLEHIAEALRAIDFGTDEEEEEFTEEEADEEEGVTTEGHQ", "length": 350 }, "evidence": [ { "id": "I3L5M6", "url": "https://omabrowser.org/oma/group/I3L5M6/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q91Z63-1", "protein_name": "E3 ubiquitin-protein ligase TRIM63", "gene_name": "Trim63", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDYKSGLIPDGNAMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTNRGGSVSMSGGRFRCPSCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYCLTCEVPTCSLCKVFGAHQACEVAPLQSIFQGQKTELSNCISMLVAGNDRVQTIISQLEDSCRVTKENSHQVKEELSHKFDALYAILDEKKSELLQRITQEQEEKLDFIEALILQYREQLEKSTKLVETAIQSLDEPGGATFLLSAKPLIKSIVEASKGCQLGKTEQGFENMDYFTLNLEHIAEALRAIDFGTDEEEEFTEEEEEEDQEEGVSTEGHQ", "length": 351 }, "evidence": [ { "id": "I3L5M6", "url": "https://omabrowser.org/oma/group/I3L5M6/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q969Q1-1", "protein_name": "E3 ubiquitin-protein ligase TRIM63", "gene_name": "TRIM63", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDYKSSLIQDGNPMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWTSRGSSVSMSGGRFRCPTCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQKTELNNCISMLVAGNDRVQTIITQLEDSRRVTKENSHQVKEELSQKFDTLYAILDEKKSELLQRITQEQEKKLSFIEALIQQYQEQLDKSTKLVETAIQSLDEPGGATFLLTAKQLIKSIVEASKGCQLGKTEQGFENMDFFTLDLEHIADALRAIDFGTDEEEEEFIEEEDQEEEESTEGKEEGHQ", "length": 353 }, "evidence": [ { "id": "I3L5M6", "url": "https://omabrowser.org/oma/group/I3L5M6/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "pmid": "" }, { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "pmid": "" }, { "name": "M band", "id": "GO:0031430", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031430", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "pmid": "" }, { "name": "titin binding", "id": "GO:0031432", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031432", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "pmid": "" }, { "name": "negative regulation of glycolytic process", "id": "GO:0045820", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045820", "evidence": [ { "database": "UniProtKB", "id": "I3L5M6", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "R-SSC-983140", "name": "Transfer of Ub from E2 to substrate and release of E2", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983140", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983140" } ] }, { "id": "R-SSC-983147", "name": "Release of E3 from polyubiquitinated substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983147", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983147" } ] }, { "id": "R-SSC-983156", "name": "Polyubiquitination of substrate", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983156", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983156" } ] }, { "id": "R-SSC-983157", "name": "Interaction of E3 with substrate and E2-Ub complex", "equation": "", "summary": "This event has been computationally inferred from an event that has been demonstrated in another species.

The inference is based on the homology mapping from PANTHER. Briefly, reactions for which all involved PhysicalEntities (in input, output and catalyst) have a mapped orthologue/paralogue (for complexes at least 75% of components must have a mapping) are inferred to the other species. High level events are also inferred for these events to allow for easier navigation.

More details and caveats of the event inference in Reactome. For details on PANTHER see also: http://www.pantherdb.org/about.jsp", "cellular_location": "cytosol", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [], "evidence": [ { "id": "R-SSC-983157", "database": "Reactome", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-983157" } ] } ], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5M6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 355, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5M6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5M6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" }, { "id": "PS50119", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50119" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B box-type", "eco_id": "ECO_0000259", "start_pos": 117, "end_pos": 159, "start_aa": "Gly", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L5M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" }, { "id": "PS51262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "COS", "eco_id": "ECO_0000259", "start_pos": 267, "end_pos": 325, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L5M6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5M6" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 79, "start_aa": "Cys", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5R5-1", "uniprot_ac": "I3L5R5", "uniprot_id": "I3L5R5_PIG", "mass": { "chemical_mass": 113890.0, "monoisotopic_mass": 113890.0 }, "refseq": { "ac": "XP_003356443", "name": "desmoglein-4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356443" }, "gene_names": [ { "name": "DSG4", "type": "recommended", "evidence": [ { "id": "I3L5R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5R5" } ] }, { "name": "DSG4", "type": "synonym", "evidence": [ { "id": "XP_003356443", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356443" } ] } ], "protein_names": [ { "name": "Desmoglein 4", "type": "synonym", "evidence": [ { "id": "I3L5R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5R5/entry#names_and_taxonomy" } ] }, { "name": "desmoglein-4", "type": "synonym", "evidence": [ { "id": "XP_003356443", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356443" } ] } ], "function": [ { "annotation": "A component of desmosome cell-cell junctions which are required for positive regulation of cellular adhesion. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.", "evidence": [ { "database": "UniProtKB", "id": "I3L5R5", "url": "https://www.uniprot.org/uniprotkb/I3L5R5#function" }, { "database": "UniProtKB", "id": "RU004358", "url": "https://www.uniprot.org/uniprotkb/RU004358#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5R5", "url": "https://www.uniprot.org/uniprotkb/I3L5R5" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "DSG4", "url": "https://www.uniprot.org/uniprotkb/I3L5R5", "locus": { "chromosome": "6", "start_pos": 115325854, "end_pos": 115289859, "strand": "-", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000020740", "url": "https://www.ensembl.org/id/ENSSSCG00000020740" } ] } } ], "crossref": [ { "id": "I3L5R5", "url": "https://alphafold.ebi.ac.uk/entry/I3L5R5", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000020740", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000020740", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100626137", "url": "https://www.ncbi.nlm.nih.gov/gene/100626137", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000233", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000233", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050971", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050971", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100626137", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626137", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "I3L5R5", "url": "https://www.orthodb.org/?gene=I3L5R5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24025", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24025", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24025:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24025:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01049", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01049", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "R-SSC-6805567", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "R-SSC-6809371", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "database": "Reactome", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_003356443", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003356443", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "I3L5R5", "url": "https://www.uniprot.org/uniprotkb/I3L5R5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5R5-1", "url": "https://www.uniprot.org/uniprotkb/I3L5R5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDWLLFRNICLLIILMVVLEVNSEFIVEVKELDMENGTTKWQTVRRQKREWIKFAAACREGEDNSKRNPIAKIRSDCEVSQKITYRISGAGIDRPPYGVFTINPRTGEINITSVVDREITPLFLIYCRAVNSRGEDLERPLELRVKVMDINDNPPVFTQNVYAASIEENSEANTLVVKLSATDADEENHLNSKIAYKIISQEPAGAPMFILNRYTGEVRTMSSFLDREQHSTYNLLVRGSDRDGATDGLSSECDCRIKVLDVNDNFPILEKTFYSASIEENCLSSELIRFQAIDLDEEGTDNWLAKYVILSGNDGNWFDIQTDPRTNEGILKVVKVLDYEQVPNIHLSIGVKNQAEFHHSVASQFRMHSTPVKIQVVNVREGPAFHPNSMTFSVREGMRGNSLLNYVLGTYTAIDLDTGNPATNVRYIIGHDAGNWLKVDSRTGEIQFSREFDKKSKYITNGIYTAEILAIDDGTGKTATGTICIEVPDVNDYCPVIVAERETICITSPSILISATGVTDHSYGAPFTFCVVDQPPGTADSWDIRSINATSAILTAEQVLYPLDYEIPILVKDSFNRACELPQIVALKACDCDSNHVCLYLGTTGIHTGDGSSVTSVSVTDDQTGTSNVGLGPTGMGMIALGLLLLLLSPLLLLMCCCKRKQPEGLGTRFAPVPEGGEGVIQSWRIEGAHPEDRDMSNIRAPVTVTASNTQDRIDSSEIYTNTYAGGGTVEGGVSGVELNTGLGTAAGLVAGGAVSTARKRSSTLGTQRDYADNSLNLAFLDSYFSEKAYAYADEDEGRPANDCLLIYDHEGAGSPVGSIGCCSWIVDDLDESYMETLDPKFRTLAEICLNTEIEPFPSQLACIPINTDLPLLGPNYFVNESSGMNLSEAEFQAEMAAPEPTIHGDVAVTETYTTADPCVQPTAIVFDPQLAPNIVVTETVLAPVYDVQGNICVPAELANTHNVIYAERVLSSPGMTDISNSSMTDGCVGPTMSGGILVGPEIQVMQMVSPDIHLNQTIGSTSPMTSRHRVTQYSNIHYSQQ", "length": 1042, "header": "tr|I3L5R5-1|I3L5R5_PIG Isoform 1 of Desmoglein 4 OS=Sus scrofa OX=9823 GN=DSG4 PE=4 SV=3 CANONICAL=I3L5R5-1" }, "isoforms": [ { "isoform_ac": "I3L5R5-1", "url": "https://www.uniprot.org/uniprotkb/I3L5R5/entry#I3L5R5-1", "sequence": { "sequence": "MDWLLFRNICLLIILMVVLEVNSEFIVEVKELDMENGTTKWQTVRRQKREWIKFAAACREGEDNSKRNPIAKIRSDCEVSQKITYRISGAGIDRPPYGVFTINPRTGEINITSVVDREITPLFLIYCRAVNSRGEDLERPLELRVKVMDINDNPPVFTQNVYAASIEENSEANTLVVKLSATDADEENHLNSKIAYKIISQEPAGAPMFILNRYTGEVRTMSSFLDREQHSTYNLLVRGSDRDGATDGLSSECDCRIKVLDVNDNFPILEKTFYSASIEENCLSSELIRFQAIDLDEEGTDNWLAKYVILSGNDGNWFDIQTDPRTNEGILKVVKVLDYEQVPNIHLSIGVKNQAEFHHSVASQFRMHSTPVKIQVVNVREGPAFHPNSMTFSVREGMRGNSLLNYVLGTYTAIDLDTGNPATNVRYIIGHDAGNWLKVDSRTGEIQFSREFDKKSKYITNGIYTAEILAIDDGTGKTATGTICIEVPDVNDYCPVIVAERETICITSPSILISATGVTDHSYGAPFTFCVVDQPPGTADSWDIRSINATSAILTAEQVLYPLDYEIPILVKDSFNRACELPQIVALKACDCDSNHVCLYLGTTGIHTGDGSSVTSVSVTDDQTGTSNVGLGPTGMGMIALGLLLLLLSPLLLLMCCCKRKQPEGLGTRFAPVPEGGEGVIQSWRIEGAHPEDRDMSNIRAPVTVTASNTQDRIDSSEIYTNTYAGGGTVEGGVSGVELNTGLGTAAGLVAGGAVSTARKRSSTLGTQRDYADNSLNLAFLDSYFSEKAYAYADEDEGRPANDCLLIYDHEGAGSPVGSIGCCSWIVDDLDESYMETLDPKFRTLAEICLNTEIEPFPSQLACIPINTDLPLLGPNYFVNESSGMNLSEAEFQAEMAAPEPTIHGDVAVTETYTTADPCVQPTAIVFDPQLAPNIVVTETVLAPVYDVQGNICVPAELANTHNVIYAERVLSSPGMTDISNSSMTDGCVGPTMSGGILVGPEIQVMQMVSPDIHLNQTIGSTSPMTSRHRVTQYSNIHYSQQ", "length": 1042, "header": "tr|I3L5R5-1|I3L5R5_PIG Isoform 1 of Desmoglein 4 OS=Sus scrofa OX=9823 GN=DSG4 PE=4 SV=3 CANONICAL=I3L5R5-1" }, "locus": { "chromosome": "6", "start_pos": 115324850, "end_pos": 115290154, "strand": "-", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032052.4", "url": "https://www.ensembl.org/id/ENSSSCT00000032052.4" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019365.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019365.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 992, "start_aa": "Thr", "end_pos": 992, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr992", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5R5", "url": "https://www.uniprot.org/uniprotkb/I3L5R5" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100626137", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100626137", "resource": "KEGG Pathway" }, { "id": "R-SSC-6805567", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6805567", "resource": "Reactome", "description": "Keratinization" }, { "id": "R-SSC-6809371", "name": "", "url": "https://www.reactome.org/PathwayBrowser/#R-SSC-6809371", "resource": "Reactome", "description": "Formation of the cornified envelope" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L5R5", "url": "https://www.uniprot.org/uniprotkb/I3L5R5" } ], "pmid": "" }, { "name": "desmosome", "id": "GO:0030057", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030057", "evidence": [ { "database": "UniProtKB", "id": "I3L5R5", "url": "https://www.uniprot.org/uniprotkb/I3L5R5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "I3L5R5", "url": "https://www.uniprot.org/uniprotkb/I3L5R5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cell-cell adhesion", "id": "GO:0098609", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098609", "evidence": [ { "database": "UniProtKB", "id": "I3L5R5", "url": "https://www.uniprot.org/uniprotkb/I3L5R5" } ], "pmid": "" }, { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "I3L5R5", "url": "https://www.uniprot.org/uniprotkb/I3L5R5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1016, "end_pos": 1018, "annotation": "n_glycosylation_sequon" }, { "start_pos": 110, "end_pos": 112, "annotation": "n_glycosylation_sequon" }, { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 548, "end_pos": 550, "annotation": "n_glycosylation_sequon" }, { "start_pos": 880, "end_pos": 882, "annotation": "n_glycosylation_sequon" }, { "start_pos": 886, "end_pos": 888, "annotation": "n_glycosylation_sequon" }, { "start_pos": 981, "end_pos": 983, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5R5-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 1042, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5R5-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5R5" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5R5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5R5" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 157, "start_aa": "Asp", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 992 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1016, "end_pos": 1018 }, { "start_pos": 110, "end_pos": 112 }, { "start_pos": 36, "end_pos": 38 }, { "start_pos": 548, "end_pos": 550 }, { "start_pos": 880, "end_pos": 882 }, { "start_pos": 886, "end_pos": 888 }, { "start_pos": 981, "end_pos": 983 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5S6-1", "uniprot_ac": "I3L5S6", "uniprot_id": "I3L5S6_PIG", "mass": { "chemical_mass": 86349.0, "monoisotopic_mass": 86349.0 }, "refseq": {}, "gene_names": [ { "name": "CD163L1", "type": "recommended", "evidence": [ { "id": "I3L5S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5S6" } ] } ], "protein_names": [ { "name": "CD163 molecule-like 1", "type": "synonym", "evidence": [ { "id": "I3L5S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5S6/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5S6", "url": "https://www.uniprot.org/uniprotkb/I3L5S6" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "CD163L1", "url": "https://www.uniprot.org/uniprotkb/I3L5S6", "locus": {} } ], "crossref": [ { "id": "I3L5S6", "url": "https://alphafold.ebi.ac.uk/entry/I3L5S6", "database": "AlphaFoldDB", "categories": [] }, { "id": "ENSSSCG00000034914", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000034914", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "IPR001190", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001190", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR19331", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19331", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19331:SF468", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19331:SF468", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00530", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00530", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "I3L5S6", "url": "https://www.uniprot.org/uniprotkb/I3L5S6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5S6-1", "url": "https://www.uniprot.org/uniprotkb/I3L5S6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALDRHLSLQGLCFLLLIVVGGQALELRLKDGRHRCEGRVELKHQGKWGTVNYAYWGLPGATVVCRQLECGTAVDAPKASYFGRGDGPIWLYALCEGTESTLTDCRHPNITDYRTKGASHDWDAGAVCSGYVRLVVGDRPCSGRVEVHSGEDWMPVSDGNFTFSTAHVICAELGCGKAVSVLGQRPLREPGNQVWAEEFRCKGDEHELSSCPRVPCPGGTCHHSGAVQVVCSAYSEVRLMRNGTSQCAGRVEMNISGGWRTLCASHWTMANANVVCRQLGCGVALSTPKGAEGGDQMWKARFHCSGAESFLWNCPVTALGVPDCAHGNTASVICSGNQTQVLPQCNDSLSEPGGSTASEESTTNCSESLALRMVSEDQECAGWLEVFYNGTWGGVCRSPMEDITLSMICRQLGCGDSGTLNSSVSLREGSRPRWVDGIQCGKTDTSFWQCPSDPWKNSSCSLTEEAYVSCAGRRPKSCPTAAPCTDKEKLRLRGGDSVCSGRVEVWHSGSWGTVCDDSWSLAEAEVVCQQLGCGHALEALRDAAFGPGSGSIWLDEVQCRGRESSLWDCAAGPWGQSDCKHEEDAGVRCSGQRTTSPPTIAGARPGSNPIPGIFSLPEILCLILGALLFLVLIILVTQLLRWRAERRALSGLEGALAEAVYEEIDYLVTPKEDLLGSPGFLSDDSVTKLPYYTGEGEENRDSKSAPDEPPTQGIDAPSEGYDDAEEVPVPGAPAASLMSKREVPPEEESGMRASQTGSSLNFPRGEAEPEKGEAIRWLHQGEIFDPGYDDVEISAPGTFTVAFP", "length": 804, "header": "tr|I3L5S6-1|I3L5S6_PIG Isoform 1 of CD163 molecule-like 1 OS=Sus scrofa OX=9823 GN=CD163L1 PE=4 SV=2 CANONICAL=I3L5S6-1" }, "isoforms": [ { "isoform_ac": "I3L5S6-1", "url": "https://www.uniprot.org/uniprotkb/I3L5S6/entry#I3L5S6-1", "sequence": { "sequence": "MALDRHLSLQGLCFLLLIVVGGQALELRLKDGRHRCEGRVELKHQGKWGTVNYAYWGLPGATVVCRQLECGTAVDAPKASYFGRGDGPIWLYALCEGTESTLTDCRHPNITDYRTKGASHDWDAGAVCSGYVRLVVGDRPCSGRVEVHSGEDWMPVSDGNFTFSTAHVICAELGCGKAVSVLGQRPLREPGNQVWAEEFRCKGDEHELSSCPRVPCPGGTCHHSGAVQVVCSAYSEVRLMRNGTSQCAGRVEMNISGGWRTLCASHWTMANANVVCRQLGCGVALSTPKGAEGGDQMWKARFHCSGAESFLWNCPVTALGVPDCAHGNTASVICSGNQTQVLPQCNDSLSEPGGSTASEESTTNCSESLALRMVSEDQECAGWLEVFYNGTWGGVCRSPMEDITLSMICRQLGCGDSGTLNSSVSLREGSRPRWVDGIQCGKTDTSFWQCPSDPWKNSSCSLTEEAYVSCAGRRPKSCPTAAPCTDKEKLRLRGGDSVCSGRVEVWHSGSWGTVCDDSWSLAEAEVVCQQLGCGHALEALRDAAFGPGSGSIWLDEVQCRGRESSLWDCAAGPWGQSDCKHEEDAGVRCSGQRTTSPPTIAGARPGSNPIPGIFSLPEILCLILGALLFLVLIILVTQLLRWRAERRALSGLEGALAEAVYEEIDYLVTPKEDLLGSPGFLSDDSVTKLPYYTGEGEENRDSKSAPDEPPTQGIDAPSEGYDDAEEVPVPGAPAASLMSKREVPPEEESGMRASQTGSSLNFPRGEAEPEKGEAIRWLHQGEIFDPGYDDVEISAPGTFTVAFP", "length": 804, "header": "tr|I3L5S6-1|I3L5S6_PIG Isoform 1 of CD163 molecule-like 1 OS=Sus scrofa OX=9823 GN=CD163L1 PE=4 SV=2 CANONICAL=I3L5S6-1" }, "locus": { "chromosome": "5", "start_pos": 63514478, "end_pos": 63488821, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000028566.3", "url": "https://www.ensembl.org/id/ENSSSCT00000028566.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019376.2", "url": "https://www.ensembl.org/id/ENSSSCP00000019376.2" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5S6", "url": "https://www.uniprot.org/uniprotkb/I3L5S6" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "I3L5S6", "url": "https://www.uniprot.org/uniprotkb/I3L5S6" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "I3L5S6", "url": "https://www.uniprot.org/uniprotkb/I3L5S6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 109, "end_pos": 111, "annotation": "n_glycosylation_sequon" }, { "start_pos": 160, "end_pos": 162, "annotation": "n_glycosylation_sequon" }, { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 254, "end_pos": 256, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 346, "end_pos": 348, "annotation": "n_glycosylation_sequon" }, { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" }, { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" }, { "start_pos": 421, "end_pos": 423, "annotation": "n_glycosylation_sequon" }, { "start_pos": 457, "end_pos": 459, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [ { "pdb_id": "AF-I3L5S6-F1", "pdb_chain": "global", "start_pos": 1, "end_pos": 804, "overlap": "1.0", "method": "AlphaFold", "type": "alphafold", "resolution": -1.0, "url": "https://data.glygen.org/ln2downloads/pdb/current/AF-I3L5S6-F1.pdb", "url_external": "https://alphafold.ebi.ac.uk/entry/I3L5S6" } ], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5S6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5S6" }, { "id": "PS50287", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50287" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SRCR", "eco_id": "ECO_0000259", "start_pos": 27, "end_pos": 129, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 109, "end_pos": 111 }, { "start_pos": 160, "end_pos": 162 }, { "start_pos": 242, "end_pos": 244 }, { "start_pos": 254, "end_pos": 256 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 346, "end_pos": 348 }, { "start_pos": 364, "end_pos": 366 }, { "start_pos": 389, "end_pos": 391 }, { "start_pos": 421, "end_pos": 423 }, { "start_pos": 457, "end_pos": 459 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L769-1", "uniprot_ac": "I3L769", "uniprot_id": "I3L769_PIG", "mass": { "chemical_mass": 60772.0, "monoisotopic_mass": 60772.0 }, "refseq": { "ac": "XP_003354320", "name": "prolyl 4-hydroxylase subunit alpha-2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354320" }, "gene_names": [ { "name": "P4HA2", "type": "recommended", "evidence": [ { "id": "I3L769", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L769" } ] }, { "name": "P4HA2", "type": "synonym", "evidence": [ { "id": "XP_003354320", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354320" } ] } ], "protein_names": [ { "name": "procollagen-proline 4-dioxygenase", "type": "recommended", "evidence": [ { "id": "I3L769", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L769/entry#names_and_taxonomy" } ] }, { "name": "1.14.11.2", "type": "synonym", "evidence": [ { "id": "I3L769", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L769/entry#names_and_taxonomy" } ] }, { "name": "prolyl 4-hydroxylase subunit alpha-2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003354320", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354320" } ] } ], "function": [ { "annotation": "Catalyzes the post-translational formation of 4-hydroxyproline in -Xaa-Pro-Gly- sequences in collagens and other proteins.", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y0", "url": "https://www.uniprot.org/uniprotkb/I3L5Y0#function" }, { "database": "UniProtKB", "id": "ARBA00002035", "url": "https://www.uniprot.org/uniprotkb/ARBA00002035#function" }, { "database": "UniProtKB", "id": "I3L769", "url": "https://www.uniprot.org/uniprotkb/I3L769#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L769", "url": "https://www.uniprot.org/uniprotkb/I3L769" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "P4HA2", "url": "https://www.uniprot.org/uniprotkb/I3L769", "locus": { "chromosome": "2", "start_pos": 134502212, "end_pos": 134595430, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000020915", "url": "https://www.ensembl.org/id/ENSSSCG00000020915" } ] } } ], "crossref": [ { "id": "ENSSSCG00000020915", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000020915", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "100623801", "url": "https://www.ncbi.nlm.nih.gov/gene/100623801", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005123", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005123", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006620", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006620", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013547", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013547", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044862", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044862", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "ssc:100623801", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623801", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MLLMAWF", "url": "https://omabrowser.org/oma/group/MLLMAWF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L5Y0", "url": "https://www.orthodb.org/?gene=I3L5Y0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "I3L769", "url": "https://www.orthodb.org/?gene=I3L769", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10869", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10869", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10869:SF244", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10869:SF244", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08336", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08336", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23558", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23558", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003354320", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003354320", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "I3L5Y0", "url": "https://www.uniprot.org/uniprotkb/I3L5Y0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5Y0-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L769", "url": "https://www.uniprot.org/uniprotkb/I3L769", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L769-1", "url": "https://www.uniprot.org/uniprotkb/I3L769-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLQVSMLLVAWFGVLNCVQAEFFTSIGHMTDLIYAEKDLVQSLKEYILVEEAKLSKIKSWASKMEALTSQSAADPEGYLAHPVNAYKLVKRLNTDWPVLEDLVLQDSAAGFIANLSVQRQFFPTDEDEAGAAKALMRLQDTYKLDPDTISRGDLPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTSKAQVLDYLSYAVFQLGDLHRALELTRRLLSLDPGHERAGGNLRYFERLLEEEREKMLSNHTEAGPSTPGGIYERPVDYLPERDVYESLCRGEGVKLTPRRQKRLFCRYHHGNRTPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRKDEQDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPCGSTEVD", "length": 535, "header": "tr|I3L769-1|I3L769_PIG Isoform 1 of procollagen-proline 4-dioxygenase OS=Sus scrofa OX=9823 GN=P4HA2 PE=3 SV=2 CANONICAL=I3L769-1" }, "isoforms": [ { "isoform_ac": "I3L5Y0-1", "url": "https://www.uniprot.org/uniprotkb/I3L769/entry#I3L5Y0-1", "sequence": { "sequence": "MKLQVSMLLVAWFGVLNCVQAEFFTSIGHMTDLIYAEKDLVQSLKEYILVEEAKLSKIKSWASKMEALTSQSAADPEGYLAHPVNAYKLVKRLNTDWPVLEDLVLQDSAAGFIANLSVQRQFFPTDEDEAGAAKALMRLQDTYKLDPDTISRGDLPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTSKAQVLDYLSYAVFQLGDLHRALELTRRLLSLDPGHERAGGNLRYFERLLEEEREKMLSNHTEAGPSTPGGIYERPVDYLPERDVYESLCRGEGVKLTPRRQKRLFCRYHHGNRTPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSGLKTEGNRLATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPCGSTEVD", "length": 533, "header": "tr|I3L5Y0-1|I3L769_PIG Computationally mapped isoform of procollagen-proline 4-dioxygenase OS=Sus scrofa OX=9823 GN=P4HA2 PE=3 SV=2 CANONICAL=I3L769-1" }, "locus": { "chromosome": "2", "start_pos": 134524212, "end_pos": 134502613, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000043347.3", "url": "https://www.ensembl.org/id/ENSSSCT00000043347.3" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000051977.3", "url": "https://www.ensembl.org/id/ENSSSCP00000051977.3" } ] } }, { "isoform_ac": "I3L769-1", "url": "https://www.uniprot.org/uniprotkb/I3L769/entry#I3L769-1", "sequence": { "sequence": "MKLQVSMLLVAWFGVLNCVQAEFFTSIGHMTDLIYAEKDLVQSLKEYILVEEAKLSKIKSWASKMEALTSQSAADPEGYLAHPVNAYKLVKRLNTDWPVLEDLVLQDSAAGFIANLSVQRQFFPTDEDEAGAAKALMRLQDTYKLDPDTISRGDLPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTSKAQVLDYLSYAVFQLGDLHRALELTRRLLSLDPGHERAGGNLRYFERLLEEEREKMLSNHTEAGPSTPGGIYERPVDYLPERDVYESLCRGEGVKLTPRRQKRLFCRYHHGNRTPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRKDEQDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPCGSTEVD", "length": 535, "header": "tr|I3L769-1|I3L769_PIG Isoform 1 of procollagen-proline 4-dioxygenase OS=Sus scrofa OX=9823 GN=P4HA2 PE=3 SV=2 CANONICAL=I3L769-1" }, "locus": { "chromosome": "2", "start_pos": 134524212, "end_pos": 134502613, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000047498.2", "url": "https://www.ensembl.org/id/ENSSSCT00000047498.2" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000044447.2", "url": "https://www.ensembl.org/id/ENSSSCP00000044447.2" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 272, "start_aa": "Thr", "end_pos": 272, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr272", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y0", "url": "https://www.uniprot.org/uniprotkb/I3L5Y0" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [ { "id": "ssc:100623801", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?ssc:100623801", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6ASK1-1", "protein_name": "procollagen-proline 4-dioxygenase", "gene_name": "P4ha2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKLQVLVLLMSWFGVLSWVQAEFFTSIGHMTDLIYAEKDLVQSLKEYILAEEAKLSKIKSWASKMEALTSKSAADPEGYLAHPVNAYKLVKRLNTDWPALGDLVLQDAAAGFVANLSVQRQFFPTDEDESGAARALMRLQDTYKLDPDMISRGELPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATVTKSLVLDYLSYAVFQLGDLHRAVELTRRLLSLDPSHERAGGNLRYFERLLEEERGKSLSNQTDAGLASQENLYERPVDYLPERDVYESLCRGEGIKMTPRRQKRLFCRYHHGNRVPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDERDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPCGTTEVD", "length": 535 }, "evidence": [ { "id": "I3L769", "url": "https://omabrowser.org/oma/group/I3L769/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "G3N2F2-1", "protein_name": "procollagen-proline 4-dioxygenase", "gene_name": "P4HA2", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKPWESTLLVAWFGVLSCVQAEFFTSIGHMTDLIYAEKDLVQSLKEYILVEEAKLSKIKSWADKMEALTSKSAADPEGYLAHPVNAYKLVKRLNTDWPALEDLVLQNSAADFIANLSVQRQFFPTDEDETGAAKALMRLQDTYKLDPDTISKGELPGTKYQAMLSVDDCFGMGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATTSKAQVLDYLSYAVFQLGDLHRAVELTRRLLSLDPSHERAGGNLHYFERLLEEEREKMLSNHTEAELASQQGIYERPVDYLPERDVYESLCRGEGVKLTPRRQKRLFCRYHHGNRVPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNLRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRKDEQDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPCGSTEVD", "length": 535 }, "evidence": [ { "id": "I3L769", "url": "https://omabrowser.org/oma/group/I3L769/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q60716-1", "protein_name": "Prolyl 4-hydroxylase subunit alpha-2", "gene_name": "P4ha2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKLQVLVLVLLMSWFGVLSWVQAEFFTSIGHMTDLIYAEKDLVQSLKEYILVEEAKLAKIKSWASKMEALTSRSAADPEGYLAHPVNAYKLVKRLNTDWPALGDLVLQDASAGFVANLSVQRQFFPTDEDESGAARALMRLQDTYKLDPDTISRGELPGTKYQAMLSVDDCFGLGRSAYNEGDYYHTVLWMEQVLKQLDAGEEATVTKSLVLDYLSYAVFQLGDLHRAVELTRRLLSLDPSHERAGGNLRYFERLLEEERGKSLSNQTDAGLATQENLYERPTDYLPERDVYESLCRGEGVKLTPRRQKKLFCRYHHGNRVPQLLIAPFKEEDEWDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFLNYMSDVEAGGATVFPDLGAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKWFHERGQEFLRPCGTTEVD", "length": 537 }, "evidence": [ { "id": "I3L769", "url": "https://omabrowser.org/oma/group/I3L769/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "iron ion binding", "id": "GO:0005506", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005506", "evidence": [ { "database": "UniProtKB", "id": "I3L769", "url": "https://www.uniprot.org/uniprotkb/I3L769" } ], "pmid": "" }, { "name": "L-ascorbic acid binding", "id": "GO:0031418", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031418", "evidence": [ { "database": "UniProtKB", "id": "I3L769", "url": "https://www.uniprot.org/uniprotkb/I3L769" } ], "pmid": "" }, { "name": "procollagen-proline 4-dioxygenase activity", "id": "GO:0004656", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004656", "evidence": [ { "database": "UniProtKB", "id": "I3L769", "url": "https://www.uniprot.org/uniprotkb/I3L769" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum lumen", "id": "GO:0005788", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005788", "evidence": [ { "database": "UniProtKB", "id": "I3L769", "url": "https://www.uniprot.org/uniprotkb/I3L769" } ], "pmid": "" }, { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "I3L769", "url": "https://www.uniprot.org/uniprotkb/I3L769" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L769", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L769" }, { "id": "PS51471", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51471" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fe2OG dioxygenase", "eco_id": "ECO_0000259", "start_pos": 412, "end_pos": 520, "start_aa": "Thr", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 272 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 115, "end_pos": 117 }, { "start_pos": 264, "end_pos": 266 }, { "start_pos": 317, "end_pos": 319 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5Y3-1", "uniprot_ac": "I3L5Y3", "uniprot_id": "I3L5Y3_PIG", "mass": { "chemical_mass": 191126.0, "monoisotopic_mass": 191126.0 }, "refseq": {}, "gene_names": [ { "name": "LY75", "type": "recommended", "evidence": [ { "id": "I3L5Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" } ] } ], "protein_names": [ { "name": "Lymphocyte antigen 75", "type": "recommended", "evidence": [ { "id": "I3L5Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3/entry#names_and_taxonomy" } ] }, { "name": "DEC-205", "type": "synonym", "evidence": [ { "id": "I3L5Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3/entry#names_and_taxonomy" } ] } ], "function": [], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5Y3", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "LY75", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3", "locus": { "chromosome": "15", "start_pos": 66740071, "end_pos": 66847605, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000021956", "url": "https://www.ensembl.org/id/ENSSSCG00000021956" } ] } } ], "crossref": [ { "id": "cd00037", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00037", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00062", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00062", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000562", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000562", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR22803", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22803", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00040", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00040", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "I3L5Y3", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5Y3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATRRATPRRVAELLVLLLACFALGEPSGHADKDSFTIVNENTGKCITPLNDWIVAKDCDKTKDMFWKWVSQHRLFHLQSQKCLGLDITKPTDSLRMFSCDSDAMLWWKCEDHSLYGAAQYRLALKGGHAIASTNSSDVWKKGGSEESLCAQPYHEIYTRDGNSNGRPCEFPFLVNGTWHHECMRDGDHNGLWCATTFNYEYEGKWGICLQPENGCEDNWEKNEQTGGCYQFNSQAALSWKEAYISCQNQGADLLSISTAAELTYLKEKEGIAKVFWIGLNQLYSARGWEWSDHKPLNFLNWDPDVSSAPTIGGSSCAKMDAYSGLWQSFSCEARLPYVCKKLLNNTVELTDVWTYSDTRCDAADWLPNDGFCYLLVNESDSWDKAHMKCKTFSSDLISIHSLADVELGQWKVQSCEEKLKYVCKKKGEKLNDTRSDKMCPPDEGWKRHGETCYKIYEDEVPFGTNCNLTITSRFEQEYLNDMMKKYTKSSEKYFWTGLRDKDASREYRWASVGGVKWAITFSNWNYLEPAFAGGCVAMATGKSLGKWEVKDCRSFRALSICKKISGPPEPEKSSPKPGDPCPEGWHSFSSGLSCYKLFHVERIVRKRNWEEAERFCQALGGHLPSFSHVDEIKEFLHFLMDQFSDQRWLWIGLNKRSPDLQGSWQWSDHTPVSTVIMANEFQQDYDIRDCAAVKVTHRPWRRSWYFYDEREFIYLRPFACDTKLEWICQIPKGRTPKMPDWYNPERAGIHGPPVIIEGSEYWFVAEPHLNYEEAVLYCASNHSSLAALTSFAGLKAIKNKIANISGDEQKWWLRTTGLPVDRRFRYSRYSLYHFPIMFGEECLSLSAKTWLNDLNKPVDCSTKLPFICEKYNVSSLEKYSPDSGAKIQCSGDWIAFQNKCFLKLKPQSLTFSEASDVCHTYGGTLPSVLSQREQDFITHLLPDTEDTLWIGLRWTAYEKINKWMDNRELIYSNFHPLLVGRRLRIPTKIFDEESSYHCALLLNLQKSPFTGTWNFTSCGEHHTLSLCQKYSEVESGQTLHNTSETMKYRNNLYKIILKTLTWSDALRECQKENMHLVSITDPHQQAFLTVQAVLRNSSLWIGLSSHDDELNFGWSDGKRLHFSRWAENNEQLEDCVVLDTDGFWKTFDCDDKQPGAICYYPGNDTEREVRPVDSVQCPSPVLNTPWIPFQNSCYNFMITKNRYVVTTQEEVHSKCQTLNPKSHILSIRDEKENNFVLEELLRYNYMASWVMLGITYENNSLMWSDKTTLSYTHWRAGRPVVKNDKFFAGLNTDGFWDIQTFNTVEDILYLHQHSIVACKIEMVDHKEEYNTTLPQSIPYEDGVYNVIQKKVTWYEALNTCSQSGGHLASVHDQSDQLFLEDIVKRDGFPLWVGLSSHDGSESSFEWSDGSAFDYIPWKDKKSAGNCVVLDPKGIWKHEKCNSVKDGAICYKPTKSKEMSSYTYSSRCPAVKGSKSQWIQYRGYCYISDQALHSFSEARQLCSEFDPSATIVTIKDEDENKFVSKLMRENNNITMRVWLGLSQLSADRSWNWLDGSKAIFVKWANKIKSGSGQCSILLASNETWIKVECSDGRGRVVCKVPVGPDYRGIGITFAVLSVLAFISGLIWFLFQRNRLHWMRFSSVRYQQGANEDEIMLPSFHD", "length": 1661, "header": "tr|I3L5Y3-1|I3L5Y3_PIG Isoform 1 of Lymphocyte antigen 75 OS=Sus scrofa OX=9823 GN=LY75 PE=1 SV=4 CANONICAL=I3L5Y3-1" }, "isoforms": [ { "isoform_ac": "I3L5Y3-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3/entry#I3L5Y3-1", "sequence": { "sequence": "MATRRATPRRVAELLVLLLACFALGEPSGHADKDSFTIVNENTGKCITPLNDWIVAKDCDKTKDMFWKWVSQHRLFHLQSQKCLGLDITKPTDSLRMFSCDSDAMLWWKCEDHSLYGAAQYRLALKGGHAIASTNSSDVWKKGGSEESLCAQPYHEIYTRDGNSNGRPCEFPFLVNGTWHHECMRDGDHNGLWCATTFNYEYEGKWGICLQPENGCEDNWEKNEQTGGCYQFNSQAALSWKEAYISCQNQGADLLSISTAAELTYLKEKEGIAKVFWIGLNQLYSARGWEWSDHKPLNFLNWDPDVSSAPTIGGSSCAKMDAYSGLWQSFSCEARLPYVCKKLLNNTVELTDVWTYSDTRCDAADWLPNDGFCYLLVNESDSWDKAHMKCKTFSSDLISIHSLADVELGQWKVQSCEEKLKYVCKKKGEKLNDTRSDKMCPPDEGWKRHGETCYKIYEDEVPFGTNCNLTITSRFEQEYLNDMMKKYTKSSEKYFWTGLRDKDASREYRWASVGGVKWAITFSNWNYLEPAFAGGCVAMATGKSLGKWEVKDCRSFRALSICKKISGPPEPEKSSPKPGDPCPEGWHSFSSGLSCYKLFHVERIVRKRNWEEAERFCQALGGHLPSFSHVDEIKEFLHFLMDQFSDQRWLWIGLNKRSPDLQGSWQWSDHTPVSTVIMANEFQQDYDIRDCAAVKVTHRPWRRSWYFYDEREFIYLRPFACDTKLEWICQIPKGRTPKMPDWYNPERAGIHGPPVIIEGSEYWFVAEPHLNYEEAVLYCASNHSSLAALTSFAGLKAIKNKIANISGDEQKWWLRTTGLPVDRRFRYSRYSLYHFPIMFGEECLSLSAKTWLNDLNKPVDCSTKLPFICEKYNVSSLEKYSPDSGAKIQCSGDWIAFQNKCFLKLKPQSLTFSEASDVCHTYGGTLPSVLSQREQDFITHLLPDTEDTLWIGLRWTAYEKINKWMDNRELIYSNFHPLLVGRRLRIPTKIFDEESSYHCALLLNLQKSPFTGTWNFTSCGEHHTLSLCQKYSEVESGQTLHNTSETMKYRNNLYKIILKTLTWSDALRECQKENMHLVSITDPHQQAFLTVQAVLRNSSLWIGLSSHDDELNFGWSDGKRLHFSRWAENNEQLEDCVVLDTDGFWKTFDCDDKQPGAICYYPGNDTEREVRPVDSVQCPSPVLNTPWIPFQNSCYNFMITKNRYVVTTQEEVHSKCQTLNPKSHILSIRDEKENNFVLEELLRYNYMASWVMLGITYENNSLMWSDKTTLSYTHWRAGRPVVKNDKFFAGLNTDGFWDIQTFNTVEDILYLHQHSIVACKIEMVDHKEEYNTTLPQSIPYEDGVYNVIQKKVTWYEALNTCSQSGGHLASVHDQSDQLFLEDIVKRDGFPLWVGLSSHDGSESSFEWSDGSAFDYIPWKDKKSAGNCVVLDPKGIWKHEKCNSVKDGAICYKPTKSKEMSSYTYSSRCPAVKGSKSQWIQYRGYCYISDQALHSFSEARQLCSEFDPSATIVTIKDEDENKFVSKLMRENNNITMRVWLGLSQLSADRSWNWLDGSKAIFVKWANKIKSGSGQCSILLASNETWIKVECSDGRGRVVCKVPVGPDYRGIGITFAVLSVLAFISGLIWFLFQRNRLHWMRFSSVRYQQGANEDEIMLPSFHD", "length": 1661, "header": "tr|I3L5Y3-1|I3L5Y3_PIG Isoform 1 of Lymphocyte antigen 75 OS=Sus scrofa OX=9823 GN=LY75 PE=1 SV=4 CANONICAL=I3L5Y3-1" }, "locus": { "chromosome": "15", "start_pos": 66847527, "end_pos": 66741626, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000032142.5", "url": "https://www.ensembl.org/id/ENSSSCT00000032142.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019434.4", "url": "https://www.ensembl.org/id/ENSSSCP00000019434.4" } ] } } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y3", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transmembrane signaling receptor activity", "id": "GO:0004888", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004888", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y3", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" } ], "pmid": "" }, { "name": "carbohydrate binding", "id": "GO:0030246", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030246", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y3", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y3", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y3", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "receptor-mediated endocytosis", "id": "GO:0006898", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006898", "evidence": [ { "database": "UniProtKB", "id": "I3L5Y3", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1015, "end_pos": 1017, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1042, "end_pos": 1044, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1097, "end_pos": 1099, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1164, "end_pos": 1166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1259, "end_pos": 1261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1331, "end_pos": 1333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 135, "end_pos": 137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1532, "end_pos": 1534, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1581, "end_pos": 1583, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 345, "end_pos": 347, "annotation": "n_glycosylation_sequon" }, { "start_pos": 378, "end_pos": 380, "annotation": "n_glycosylation_sequon" }, { "start_pos": 432, "end_pos": 434, "annotation": "n_glycosylation_sequon" }, { "start_pos": 468, "end_pos": 470, "annotation": "n_glycosylation_sequon" }, { "start_pos": 782, "end_pos": 784, "annotation": "n_glycosylation_sequon" }, { "start_pos": 804, "end_pos": 806, "annotation": "n_glycosylation_sequon" }, { "start_pos": 873, "end_pos": 875, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 225, "end_pos": 341, "start_aa": "Gln", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "I3L5Y3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Y3" }, { "id": "PS51092", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51092" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibronectin type-II", "eco_id": "ECO_0000259", "start_pos": 164, "end_pos": 211, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1015, "end_pos": 1017 }, { "start_pos": 1042, "end_pos": 1044 }, { "start_pos": 1097, "end_pos": 1099 }, { "start_pos": 1164, "end_pos": 1166 }, { "start_pos": 1259, "end_pos": 1261 }, { "start_pos": 1331, "end_pos": 1333 }, { "start_pos": 135, "end_pos": 137 }, { "start_pos": 1532, "end_pos": 1534 }, { "start_pos": 1581, "end_pos": 1583 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 345, "end_pos": 347 }, { "start_pos": 378, "end_pos": 380 }, { "start_pos": 432, "end_pos": 434 }, { "start_pos": 468, "end_pos": 470 }, { "start_pos": 782, "end_pos": 784 }, { "start_pos": 804, "end_pos": 806 }, { "start_pos": 873, "end_pos": 875 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } }, { "uniprot_canonical_ac": "I3L5Z9-1", "uniprot_ac": "I3L5Z9", "uniprot_id": "I3L5Z9_PIG", "mass": { "chemical_mass": 219950.0, "monoisotopic_mass": 219950.0 }, "refseq": {}, "gene_names": [ { "name": "ZNFX1", "type": "recommended", "evidence": [ { "id": "I3L5Z9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ] } ], "protein_names": [ { "name": "NFX1-type zinc finger-containing protein 1", "type": "recommended", "evidence": [ { "id": "I3L5Z9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "RNA-binding protein that initiates the antiviral response and is required to restrict the replication of RNA viruses. Acts as a double-stranded RNA (dsRNA) sensor that recognizes viral RNA and then interacts with MAVS to initiate the type I interferon response. Also required for immunity against some bacteria, such as mycobacteria.", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9#function" }, { "database": "UniProtKB", "id": "ARBA00053597", "url": "https://www.uniprot.org/uniprotkb/ARBA00053597#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Sus scrofa", "taxid": 9823, "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "common_name": "Pig", "glygen_name": "Pig", "reference_species": "Sus scrofa [9823]" } ], "gene": [ { "name": "ZNFX1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9", "locus": { "chromosome": "17", "start_pos": 50925789, "end_pos": 50958705, "strand": "+", "evidence": [ { "database": "Ensembl Gene", "id": "ENSSSCG00000030108", "url": "https://www.ensembl.org/id/ENSSSCG00000030108" } ] } } ], "crossref": [ { "id": "ENSSSCG00000030108", "url": "https://bgee.org/?page=gene&gene_id=ENSSSCG00000030108", "database": "Bgee", "categories": [ "Gene Expression" ] }, { "id": "cd06008", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06008", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17936", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17936", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18808", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18808", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "IPR000967", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000967", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041679", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041679", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046439", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046439", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057373", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057373", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PVCQVPI", "url": "https://omabrowser.org/oma/group/PVCQVPI/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "I3L5Z9", "url": "https://www.orthodb.org/?gene=I3L5Z9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10887", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10887", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10887:SF341", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10887:SF341", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13086", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13086", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13087", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13087", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20173", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20173", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25396", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25396", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3L5Z9-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LBR7", "url": "https://www.uniprot.org/uniprotkb/I3LBR7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "I3LBR7-1", "url": "https://www.uniprot.org/uniprotkb/I3LBR7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENRRPCLEARPRNPRINHRGPVDGELPPRARNQASNPPINALSGGANQHGRNPRANNHPVPHRQREERFGAMGRNPYQGRRNQEGHANEEPRGQRHGQENDTRRRNCNQEGRNCRPPRSDENFQQWRTPHQNPVEQPQQVKKLGYKFLESLLQKDPSEVVITLATSLGLRELLSHSSMKSNFLELICQVLRKACSSKMDRHSILHVLGILKNSQFLKVCLPAYVVGMITEPIPDVRNHYPEHISNIISLLQDLVSVFPASSVQETSMLISLLPASLNALRASGVDIEEETEKNLEKVQTIIEHLQEKRREGTLRVDTYTLVQPEVEDHVESYRNIPIYPTYNEVHLDERPFLRPNIISGKYDNTAVYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPVCSSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRGIVQLSFNEQSQQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEIQEEDVPFQRNIVECDSHVKEPRYLLMGGRYDFIPLIKDPSATGESLRNAKALRCSRVNVLDPSQWPSKEALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNEPVWQISLQKFPILVVCYTNHALDQFLEGIYKCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRRAYMSIMTQMKESEQELHEGAQTLECTMRGVLREQHLEKYISPQHWKSLMNGPVQDSEWVCFQGWKHSMMLEWLGLGVGSFTQNVTPPGPESTAQAEGEEEEEEGEEESSLIEIAEEADLIQADRVIEEEEVVRPRRRKKEENGAIQELAQELLAMRLDNLGPRTSAGQKQAAGEWETQRSQKKKMKKKVKVELRKLNTMTEAEASEIQDVWQLDLNSRWQLYRLWLQRYQADTRQKILGYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTITTLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEARFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCVGNMQMLAKVPLWSRIIHTLRENNQIGSALRLCCQNHPDTHTLVSKASDFQTVPEGGCSLPCEFRLGCGHVCTRACHPYDSLHKEFQCMKPCQKVVCQDGHRCPLVCFQECQPCQVKVPKIILRCGHEQMVPCSMPESDFCCQEPCPKVLKCGHQCSNPCGEDCVRFCSEMVTVNLKCGHRQQVKCSSVDGLKYDMPVKCTTKCDTILDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSPCIEPCVWRCQHYQCTQLCSEPCDRPPCYVPCTKLLACGHPCIGLCGEPCPKKCRVCNQEEVTQIFFGSEDEPDARFVQLEDCSHIFEVQALDRYMNEQDNEVAIRLKVCPICQVPIRKNLRYGASIKQRLEEIEVVKKKIQGSAGEIAISQERLKALLEKKNLLCQLLPEDFLMLKEKLDQKNLSVKDLGLVENYISFYDHLASLWDSLKKVHVLEQERVSTRLNQIHDWLTKKRLSFTNQELDDLQSEIQRLTYLVDLLARCKTAGENVKGSVAGEVNSVRKILERTCKFTQEDEQLVQKKMEALKAILPRSGLGISEEERVQIVKAMGYPQGHWFKCPNGHIYAISDCGGAMQRARCPDCREVIGGVNHTLESSNQLASEMDGARHPAWSDTANNMLNFEEIRRLM", "length": 1917, "header": "tr|I3L5Z9-1|I3L5Z9_PIG Isoform 1 of NFX1-type zinc finger-containing protein 1 OS=Sus scrofa OX=9823 GN=ZNFX1 PE=1 SV=3 CANONICAL=I3L5Z9-1" }, "isoforms": [ { "isoform_ac": "I3L5Z9-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9/entry#I3L5Z9-1", "sequence": { "sequence": "MENRRPCLEARPRNPRINHRGPVDGELPPRARNQASNPPINALSGGANQHGRNPRANNHPVPHRQREERFGAMGRNPYQGRRNQEGHANEEPRGQRHGQENDTRRRNCNQEGRNCRPPRSDENFQQWRTPHQNPVEQPQQVKKLGYKFLESLLQKDPSEVVITLATSLGLRELLSHSSMKSNFLELICQVLRKACSSKMDRHSILHVLGILKNSQFLKVCLPAYVVGMITEPIPDVRNHYPEHISNIISLLQDLVSVFPASSVQETSMLISLLPASLNALRASGVDIEEETEKNLEKVQTIIEHLQEKRREGTLRVDTYTLVQPEVEDHVESYRNIPIYPTYNEVHLDERPFLRPNIISGKYDNTAVYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPVCSSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRGIVQLSFNEQSQQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEIQEEDVPFQRNIVECDSHVKEPRYLLMGGRYDFIPLIKDPSATGESLRNAKALRCSRVNVLDPSQWPSKEALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNEPVWQISLQKFPILVVCYTNHALDQFLEGIYKCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRRAYMSIMTQMKESEQELHEGAQTLECTMRGVLREQHLEKYISPQHWKSLMNGPVQDSEWVCFQGWKHSMMLEWLGLGVGSFTQNVTPPGPESTAQAEGEEEEEEGEEESSLIEIAEEADLIQADRVIEEEEVVRPRRRKKEENGAIQELAQELLAMRLDNLGPRTSAGQKQAAGEWETQRSQKKKMKKKVKVELRKLNTMTEAEASEIQDVWQLDLNSRWQLYRLWLQRYQADTRQKILGYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTITTLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEARFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCVGNMQMLAKVPLWSRIIHTLRENNQIGSALRLCCQNHPDTHTLVSKASDFQTVPEGGCSLPCEFRLGCGHVCTRACHPYDSLHKEFQCMKPCQKVVCQDGHRCPLVCFQECQPCQVKVPKIILRCGHEQMVPCSMPESDFCCQEPCPKVLKCGHQCSNPCGEDCVRFCSEMVTVNLKCGHRQQVKCSSVDGLKYDMPVKCTTKCDTILDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSPCIEPCVWRCQHYQCTQLCSEPCDRPPCYVPCTKLLACGHPCIGLCGEPCPKKCRVCNQEEVTQIFFGSEDEPDARFVQLEDCSHIFEVQALDRYMNEQDNEVAIRLKVCPICQVPIRKNLRYGASIKQRLEEIEVVKKKIQGSAGEIAISQERLKALLEKKNLLCQLLPEDFLMLKEKLDQKNLSVKDLGLVENYISFYDHLASLWDSLKKVHVLEQERVSTRLNQIHDWLTKKRLSFTNQELDDLQSEIQRLTYLVDLLARCKTAGENVKGSVAGEVNSVRKILERTCKFTQEDEQLVQKKMEALKAILPRSGLGISEEERVQIVKAMGYPQGHWFKCPNGHIYAISDCGGAMQRARCPDCREVIGGVNHTLESSNQLASEMDGARHPAWSDTANNMLNFEEIRRLM", "length": 1917, "header": "tr|I3L5Z9-1|I3L5Z9_PIG Isoform 1 of NFX1-type zinc finger-containing protein 1 OS=Sus scrofa OX=9823 GN=ZNFX1 PE=1 SV=3 CANONICAL=I3L5Z9-1" }, "locus": { "chromosome": "17", "start_pos": 50956166, "end_pos": 50926839, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000030602.5", "url": "https://www.ensembl.org/id/ENSSSCT00000030602.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000019450.3", "url": "https://www.ensembl.org/id/ENSSSCP00000019450.3" } ] } }, { "isoform_ac": "I3LBR7-1", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9/entry#I3LBR7-1", "sequence": { "sequence": "MENRRPCLEARPRNPRINHRGPVDGELPPRARNQASNPPINALSGGANQHGRNPRANNHPVPHRQREERFGAMGRNPYQGRRNQEGHANEEPRGQRHGQENDTRRRNCNQEGRNCRPPRSDENFQQWRTPHQNPVEQPQQVKKLGYKFLESLLQKDPSEVVITLATSLGLRELLSHSSMKSNFLELICQVLRKACSSKMDRHSILHVLGILKNSQFLKVCLPAYVVGMITEPIPDVRNHYPEHISNIISLLQDLVSVFPASSVQETSMLISLLPASLNALRASGVDIEEETEKNLEKVQTIIEHLQEKRREGTLRVDTYTLVQPEVEDHVESYRNIPIYPTYNEVHLDERPFLRPNIISGKYDNTAVYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPVCSSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRGIVQLSFNEQSQQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEIQEEDVPFQRNIVECDSHVKEPRYLLMGGRYDFIPLIKDPSATGESLRNAKALRCSRVNVLDPSQWPSKEALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNEPVWQISLQKFPILVVCYTNHALDQFLEGIYKCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRRAYMSIMTQMKESEQELHEGAQTLECTMRGVLREQHLEKYISPQHWKSLMNGPVQDSEWVCFQGWKHSMMLEWLGLGVGSFTQNVTPPGPESTAQAEGEEEEEEGEEESSLIEIAEEADLIQADRVIEEEEVVRPRRRKKEENGAIQELAQELLAMRLDNLGPRTSAGQKQAAGEWETQRSQKKKMKKKVKVELRKLNTMTEAEASEIQDVWQLDLNSRWQLYRLWLQRYQADTRQKILGYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTITTLSKACQHLILIGDHQQHRMRPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEARFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCVGNMQMLAKVPLWSRIIHTLRENNQIGSALRLCCQNHPDTHTLVSKASDFQTVPEGGCSLPCEFRLGCGHVCTRACHPYDSLHKEFQCMKPCQKVVCQDGHRCPLVCFQECQPCQVKVPKIILRCGHEQMVPCSMPESDFCCQEPCPKVLKCGHQCSNPCGEDCVRFCSEMVTVNLKCGHRQQVKCSSVDGLKYDMPVKCTTKCDTILDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSPCIEPCVWRCQHYQCTQLCSEPCDRPPCYVPCTKLLACGHPCIGLCGEPCPKKCRVCNQEEVTQIFFGSEDEPDARFVQLEDCSHIFEVQALDRYMNEQDNEVAIRLKVCPICQVPIRKNLRYGASIKQRLEEIEVVKKKIQGSAGEIAISQERLKALLEKKNLLCQLLPEDFLMLKEKLDQKNLSVKDLGLVENYISFYDHLASLWDSLKKVHVLEQERVSTRLNQIHDWLTKKRLSFTNQELDDLQSEIQRLTYLVDLLARCKTAGENVKGSVAGEVNSVRKILERTCKFTQEDEQLVQKKMEALKAILPRSGLGISEEERVQIVKAMGYPQGHWFKCPNGHIYAISDCGGAMQRARCPDCREVIGGVNHTLESSNQLASEMDGARHPAWSDTANNMLNFEEIRRLM", "length": 1880, "header": "tr|I3LBR7-1|I3L5Z9_PIG Computationally mapped isoform of NFX1-type zinc finger-containing protein 1 OS=Sus scrofa OX=9823 GN=ZNFX1 PE=1 SV=3 CANONICAL=I3L5Z9-1" }, "locus": { "chromosome": "17", "start_pos": 50956166, "end_pos": 50926839, "strand": "+", "evidence": [ { "database": "Ensembl Transcript", "id": "ENSSSCT00000022577.5", "url": "https://www.ensembl.org/id/ENSSSCT00000022577.5" }, { "database": "Ensembl Peptide", "id": "ENSSSCP00000021488.3", "url": "https://www.ensembl.org/id/ENSSSCP00000021488.3" } ] } } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "other", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 798, "start_aa": "Thr", "end_pos": 798, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr798", "evidence": [ { "id": "GLY_001152", "database": "GlyGen", "url": "https://data.glygen.org/GLY_001152" } ], "filter_code": "00000000000000001000.00000000001000.0.01000" } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "An improved pig reference genome sequence to enable pig genetics and genomics research.", "journal": "Gigascience", "date": "2020", "authors": "Flicek P., Griffin D.K., Hall R., Howe K., Kim K., Liu H., Hume D.A., Watson M., Sargent C.A., Affara N., Koren S., Tseng E., Chow W., O'Connor R.E., Tuggle C.K., Archibald A.L., Hannum G., Rund L.A., Nonneman D.J., Rohrer G.A., Finlayson H.A., Schook L.B., Smith T.P.L., Aken B., Billis K., Hourlier T., Phillippy A.M., Beiki H., Bickhart D.M., Eory L., Giron C.G., Izuogu O., Manchanda N., Martin F.J., Rosen B.D., Schroeder S.G., Schwartz A.S., Skinner B.M., Talbot R., Warr A.", "evidence": [ { "database": "UniProtKB", "id": "I3LBR7", "url": "https://www.uniprot.org/uniprotkb/I3LBR7" } ], "reference": [ { "type": "PubMed", "id": "32543654", "url": "https://glygen.org/publication/PubMed/32543654" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "E1BN24-1", "protein_name": "NFX1-type zinc finger-containing protein 1", "gene_name": "ZNFX1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEDRRPCPEVGPRNPHINHRGPMDGELPPRARNQANNPPANALRGGASQPRRHPRANSHPFPHRQREERFGAMGGNPHQGRRNQEGHANDEPRGQRHGQENDTRRRNGNQEGRNRRPPPRSDENFQQWRTPHQKPAEQPQQVKKLGYKFLESLLQKDSSEVVITLATCSGLQELLSHSFMKSDFLELICQVLRKACSSKMDRHSVLHILGILKNSKFLKVCLPAYVVGMITEPLPEVRNQYPKHISNIISLLQDLVSVFPASSVQETSMLISLLPASLNALRASGVNIEEETEKNLEKVQTIIEHLQEKRREGTLKVDTYTLVQPKAEDHVESYRTMPIYPTYNEVHLDEKPFLRPNIISGKYESTAVYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPVCSSTGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRGIVQLSFNEQSQQLLADVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVECDSDVREPRYLLMGGRYDFTPLIKNPSATGEPLRNDEGLRHPRVNVLDPCQWPSKEALRLDDSQMEALRFALTRELAIIQGPPGTGKTYVGLKIVQALLTNEPVWQISVQKFPILVVCYTNHALDQFLEGIYKCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPLHLRRAYMSIMTQMKESEQELHEGAQTLECTMRGVLQEQHLEKFISPQHWKSLMNGPNQDSEWVCFRGRKHSVMLEFLGLGVGSFTQSVAPAVPENTAQAEREEEEEEGEEDGSLIEIAEEADLIQADRMIEEEELARPRRRRKEENGAIQELAEVLLAMRLDNHGPGTAAGQEQATGEWETQRSQKKRMKKKVKVELRKLNTMTEAEANKIQDVWQLDLNSRWQLYRLWLQMYQADTRRKILNYERQYRTSAERMAELRLQEDLHILKDAQIVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHTFPEQEIQEGRSHQNQHEARFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENDQIGCALRLCCQNHPDTHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSSHKEFQCMKPCQKVICQDGHRCPLVCFQECQPCQVKVPKTILRCGHKQMVPCSVPESDFCCQEPCPKVLKCGHTCSHPCGEDCVWLCSEMVTVKLKCGHRQQMKCGNVEDLKHGLPVQCTTKCGSILDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCTGECPPCQRICQNRCVHSQCKKKCGELCTPCMEPCIWRCRHYQCTRLCSEPCDRPPCYVPCTKLLACGHPCIGLCGEPCPKKCRVCHQEEVTQIFFGSEDEPDARFVQLEDCSHIFEVQALDRYMNEQGDEVAIRLKVCPICQVPIRKNLRYGTSLKQRLEEIEVVKEKILGSAGEIAVSQERLTALLEGKNLLCQELPEDFLKLEEKLAQKNLSVKDLGLVENYISFYDHLAGLYDSLKKVHVLEQEKVRTRLDQVHEWLAKKRLSFSSQELDDLQSEIQRLRYLVNLLTRCKMAEGKVRGSVAEEISTVRNILERTCKFTQKDAELVQRKMEALKAALPCSGLGISEEERVQIVKAMGYRRGHWFKCPNGHIYVIGDCGGAMQRAKCPECQEVIGGENHTLERSNRLASEMDGAQHPAWSDTANNMMNYEELQRMM", "length": 1918 }, "evidence": [ { "id": "I3L5Z9", "url": "https://omabrowser.org/oma/group/I3L5Z9/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q8R151-1", "protein_name": "NFX1-type zinc finger-containing protein 1", "gene_name": "Znfx1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDRRPHLEARPRNPPANHRGPMDGELPPRARNQTNNPAATNHAGRHLRASNHPAPFRQREERFRAMGRNPHQGRRNQEGHTSDEARDQRQSQNDTRRRNDDQEGRSHRPPWSSDTFQQWHTPPQKPGEQPQQTKRLGYKFLESLLQKEPSEVAITLATSLGLKELLSHSSMKPSFLQLICQVLRKACSSRIDRQSILHVLGILNNSKFLRVCLPAYVVGMITEPSPDIRNQYPEHISNIISLLQDLVSVFPASSMQETSMLISLLPTSLNALRASGVDIEEETEKNLEKVQAIIKYLQEKRRQGSLRVDTYTLVQAEAEGEVESYRAMPIYPTYNEVHLDEKPFLRPNIISGKYESTAVYLDTHFRLLREDFVRPLREGILKLLQSFEDQCLRKRKFDDIRIYFDARIITPMCSASGIVYKVQFDTKPLKLVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREHEDLCQGIVQLCFNEQSQQLLADVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVQCDSYVRNPRYLLMGGRYDFTPLMENPSAMRKSLRGAEALRHPRINVFDFGQWPSKEALKLDDSQMEALQFALTKELAIIQGPPGTGKTYVGLKIVQALLTNKSVWQINTQTFPILVVCYTNHALDQFLEGIYGCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRTLPMHLRRAYMSIVTEMKESEQKLQEGAQTLECTMHGVLREQHLEKYISAQHWESLMSGPVQDADWVCVQPSKHSMILEWLGLGVGSFTQSASPAGPENTAQAEGEEEEEGEEEGSLIEIAEEADLIQADRVIEEEEVVRPRRRKKEENGTDQELAKMLLAMRLDQEVPGTTAGPEQATEEWETQRGQKKKMKRRVKVELRKLNTMTKAEANGIQDVWQLDLSSRWQLYRLWLQMYQADTRRRILSYERQYRTWAERMAELRLQEDLHILKDAEVVGMTTTGAAKYRQILQQVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYEQIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYLLCQEYLPSQITILTTYTGQLFCLRKLMPVKTFAGIKVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQMLAKVPLWSRIIHTLRENNQIGPSLRLCCQNHPETHTLVSKASDFQKVPEGGCSRPCEFRLACGHVCTRACHPYDSSHKEFQCMKPCQKVLCQDGHRCPNVCFQECQPCQVKVPKIILKCGHKQMVPCSMSESEFCCQEPCSKILRCGHRCSHLCGEDCVRLCSERVTVELKCGHSQLVKCGNVEDIKYGLPVKCTTKCDTTLDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCTGECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCVWRCQHYQCTKLCSEPCNRPPCYVPCTKLLACGHPCIGLCGEPCPKKCRVCQPDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRFMNEQKDDEVAIKLKVCPICQVPIRKNLRYGTSIKQRLEEIEIVKEKIQGSAGEISTSQEQLKALLKSKTLFHQLRPEEFLILQEKLAQKNLSVKDLGLVENSIRFYDHLANLEGSLEKVHCGEQQSVRTRLEQVHEWLAKKRLSFSSQELSDLQSEIQRLTYLVNLLMRCKMAEKVKGSIAEEVSSIRNILEKTSKFTQEDEQLVQKKMDALKTTLPCSGLGISDEERVQIVTAMGVPRGHWFKCPNGHIYVITECGGAMQRSTCPECQEVIGGENHTLERSNHLASEMDGAQHPAWSNTANNFMNFEEIHRMM", "length": 1909 }, "evidence": [ { "id": "I3L5Z9", "url": "https://omabrowser.org/oma/group/I3L5Z9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9P2E3-1", "protein_name": "NFX1-type zinc finger-containing protein 1", "gene_name": "ZNFX1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEERRPHLDARPRNSHTNHRGPVDGELPPRARNQANNPPANALRGGASHPGRHPRANNHPAAYWQREERFRAMGRNPHQGRRNQEGHASDEARDQRHDQENDTRWRNGNQDCRNRRPPWSNDNFQQWRTPHQKPTEQPQQAKKLGYKFLESLLQKDPSEVVITLATSLGLKELLSHSSMKSNFLELICQVLRKACSSKMDRQSVLHVLGILKNSKFLKVCLPAYVVGMITEPIPDIRNQYPEHISNIISLLQDLVSVFPASSVQETSMLVSLLPTSLNALRASGVDIEEETEKNLEKVQTIIEHLQEKRREGTLRVDTYTLVQPEAEDHVESYRTMPIYPTYNEVHLDERPFLRPNIISGKYDSTAIYLDTHFRLLREDFVRPLREGILELLQSFEDQGLRKRKFDDIRIYFDTRIITPMCSSSGIVYKVQFDTKPLKFVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREQEDLCRGIVQLCFNEQSQQLLAEVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVECNSHVKEPRYLLMGGRYDFTPLIENPSATGEFLRNVEGLRHPRINVLDPGQWPSKEALKLDDSQMEALQFALTRELAIIQGPPGTGKTYVGLKIVQALLTNESVWQISLQKFPILVVCYTNHALDQFLEGIYNCQKTSIVRVGGRSNSEILKQFTLRELRNKREFRRNLPMHLRRAYMSIMTQMKESEQELHEGAKTLECTMRGVLREQYLQKYISPQHWESLMNGPVQDSEWICFQHWKHSMMLEWLGLGVGSFTQSVSPAGPENTAQAEGDEEEEGEEESSLIEIAEEADLIQADRVIEEEEVVRPQRRKKEESGADQELAKMLLAMRLDHCGTGTAAGQEQATGEWQTQRNQKKKMKKRVKDELRKLNTMTAAEANEIEDVWQLDLSSRWQLYRLWLQLYQADTRRKILSYERQYRTSAERMAELRLQEDLHILKDAQVVGMTTTGAAKYRQILQKVEPRIVIVEEAAEVLEAHTIATLSKACQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYFLCQEYLPSQITILTTYTGQLFCLRKLMPAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCIGNMQMLAKVPLWSKIIHTLRENNQIGPMLRLCCQNHPETHTLVSKASDFQKVPEGGCSLPCEFRLGCGHVCTRACHPYDSSHKEFQCMKPCQKVICQEGHRCPLVCFQECQPCQVKVPKTIPRCGHEQMVPCSVPESDFCCQEPCSKSLRCGHRCSHPCGEDCVQLCSEMVTIKLKCGHSQPVKCGHVEGLLYGGLLVKCTTKCGTILDCGHPCPGSCHSCFEGRFHERCQQPCKRLLICSHKCQEPCIGECPPCQRTCQNRCVHSQCKKKCGELCSPCVEPCVWRCQHYQCTKLCSEPCNRPPCYVPCTKLLVCGHPCIGLCGEPCPKKCRICHMDEVTQIFFGFEDEPDARFVQLEDCSHIFEVQALDRYMNEQKDDEVAIRLKVCPICQVPIRKNLRYGTSIKQRLEEIEIIKEKIQGSAGEIATSQERLKALLERKSLLHQLLPEDFLMLKEKLAQKNLSVKDLGLVENYISFYDHLASLWDSLKKMHVLEEKRVRTRLEQVHEWLAKKRLSFTSQELSDLRSEIQRLTYLVNLLTRYKIAEKKVKDSIAVEVYSVQNILEKTCKFTQEDEQLVQEKMEALKATLPCSGLGISEEERVQIVSAIGYPRGHWFKCRNGHIYVIGDCGGAMERGTCPDCKEVIGGTNHTLERSNQLASEMDGAQHAAWSDTANNLMNFEEIQGMM", "length": 1918 }, "evidence": [ { "id": "I3L5Z9", "url": "https://omabrowser.org/oma/group/I3L5Z9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "helicase activity", "id": "GO:0004386", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004386", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "nuclear RNA-directed RNA polymerase complex", "id": "GO:0031380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031380", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 7, "go_terms": [ { "name": "innate immune response", "id": "GO:0045087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045087", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "defense response to virus", "id": "GO:0051607", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051607", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "negative regulation of viral genome replication", "id": "GO:0045071", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045071", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "defense response to bacterium", "id": "GO:0042742", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042742", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "activation of innate immune response", "id": "GO:0002218", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002218", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "regulatory ncRNA-mediated heterochromatin formation", "id": "GO:0031048", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031048", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" }, { "name": "immune system process", "id": "GO:0002376", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002376", "evidence": [ { "database": "UniProtKB", "id": "I3L5Z9", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 101, "end_pos": 103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1692, "end_pos": 1694, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1879, "end_pos": 1881, "annotation": "n_glycosylation_sequon" }, { "start_pos": 796, "end_pos": 798, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "I3L5Z9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/I3L5Z9" }, { "id": "PS51981", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51981" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RZ-type", "eco_id": "ECO_0000259", "start_pos": 1826, "end_pos": 1895, "start_aa": "Ile", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 798 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 101, "end_pos": 103 }, { "start_pos": 1692, "end_pos": 1694 }, { "start_pos": 1879, "end_pos": 1881 }, { "start_pos": 796, "end_pos": 798 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 1 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ], "tool_support": { "graph_view": "yes" } } ]